Genomic Epidemiology Ontology
type: Ontology
version IRI: genepio.owl
description: The Genomic Epidemiology Ontology aims to provide a comprehensive controlled vocabulary for infectious disease surveillance and outbreak investigations. It is an application ontology that draws on many other ontologies including anatomy, taxonomy, disease, symptoms, environment and food types for foodborn pathogen metadata.
license: http://creativecommons.org/licenses/by/3.0/
default-namespace: GENEPIO
versionInfo: 2024-12-18

metadata section
type: AnnotationProperty

term as in existing standard
type: AnnotationProperty

term source
type: AnnotationProperty

user interface label
type: AnnotationProperty
definition: The user interface label is the label that should be placed on a datum when presented on a form or report
definition editor: Damion Dooley

user interface definition
type: AnnotationProperty

obsolete: user interface help
type: AnnotationProperty
definition: A user interface help annotation is a textual phrase to display with an entity on a form or report that provides some detail about what the entity is or how it is being used.
definition editor: Damion Dooley
deprecated: true

obsolete: user interface hidden
type: AnnotationProperty
definition editor: Damion Dooley
has obsolescence reason: IAO_0000103
deprecated: true

user interface feature
type: AnnotationProperty
definition: A user interface feature is a pre-set list of features and their acceptable values that a user interface rendering system should use to display an entity on a form or report
definition editor: Damion Dooley

obsolete: user interface value specification
type: AnnotationProperty
definition: This annotation can be used to select the value specification that a referenced entity or specification component has for data entry. Can be scalar value specification / categorical tree specification etc.
definition editor: Damion Dooley
deprecated: true

user interface regular epression normalize
type: AnnotationProperty
user interface label: UI regex normalize
has curation status: IAO_0000428
definition editor: Damion Dooley

user interface regular expression validate
type: AnnotationProperty
user interface label: UI regex validate
has curation status: IAO_0000428
definition editor: Damion Dooley

user interface regular expression display format
type: AnnotationProperty
user interface label: UI regex format
has curation status: IAO_0000428
definition editor: Damion Dooley

editor preferred label
type: AnnotationProperty
editor preferred label: editor preferred label
editor preferred label: editor preferred term
editor preferred label: editor preferred term~editor preferred label
has curation status: IAO_0000122
definition: The concise, meaningful, and human-friendly name for a class or property preferred by the ontology developers. (US-English)
definition editor: PERSON:Daniel Schober
definition source: GROUP:OBI:<http://purl.obolibrary.org/obo/obi>
label: editor preferred term
label: editor preferred term~editor preferred label

example of usage
type: AnnotationProperty
editor preferred label: example of usage
has curation status: IAO_0000122
definition: A phrase describing how a term should be used and/or a citation to a work which uses it. May also include other kinds of examples that facilitate immediate understanding, such as widely know prototypes or instances of a class, or cases where a relation is said to hold.
definition editor: PERSON:Daniel Schober
definition source: GROUP:OBI:<http://purl.obolibrary.org/obo/obi&gt>

has curation status
type: AnnotationProperty
editor preferred label: has curation status
definition editor: PERSON:Alan Ruttenberg
definition editor: PERSON:Bill Bug
definition editor: PERSON:Melanie Courtot
definition source: OBI_0000281

definition
type: AnnotationProperty
editor preferred label: definition
editor preferred label: textual definition
has curation status: IAO_0000122
definition: A property representing the English language definitions of what NCI means by the concept. They may also include information about the definition's source and attribution in a form that can easily be interpreted by software.
definition: English language definitions of what NCI means by the concept. These are limited to 1024 characters. They may also include information about the definition's source and attribution in a form that can easily be interpreted by software.
definition: The official OBI definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions.
definition: The official definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions.
definition: The official definition.
editor note: 2012-04-05: Barry Smith The official OBI definition, explaining the meaning of a class or property: 'Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions' is terrible. Can you fix to something like: A statement of necessary and sufficient conditions explaining the meaning of an expression referring to a class or property. Alan Ruttenberg Your proposed definition is a reasonable candidate, except that it is very common that necessary and sufficient conditions are not given. Mostly they are necessary, occasionally they are necessary and sufficient or just sufficient. Often they use terms that are not themselves defined and so they effectively can't be evaluated by those criteria. On the specifics of the proposed definition: We don't have definitions of 'meaning' or 'expression' or 'property'. For 'reference' in the intended sense I think we use the term 'denotation'. For 'expression', I think we you mean symbol, or identifier. For 'meaning' it differs for class and property. For class we want documentation that let's the intended reader determine whether an entity is instance of the class, or not. For property we want documentation that let's the intended reader determine, given a pair of potential relata, whether the assertion that the relation holds is true. The 'intended reader' part suggests that we also specify who, we expect, would be able to understand the definition, and also generalizes over human and computer reader to include textual and logical definition. Personally, I am more comfortable weakening definition to documentation, with instructions as to what is desirable. We also have the outstanding issue of how to aim different definitions to different audiences. A clinical audience reading chebi wants a different sort of definition documentation/definition from a chemistry trained audience, and similarly there is a need for a definition that is adequate for an ontologist to work with.
definition editor: PERSON:Daniel Schober
definition source: GROUP:OBI:<http://purl.obolibrary.org/obo/obi>
has exact synonym: DEFINITION
comment: Allyson Lister 8.10.2019: Although the IAO definition has been included here, we have made a curation decision to allow non-Aristotelian definitions.
label: textual definition

editor note
type: AnnotationProperty
editor preferred label: editor note
has curation status: IAO_0000122
definition: An administrative note intended for its editor. It may not be included in the publication version of the ontology, so it should contain nothing necessary for end users to understand the ontology.
definition editor: PERSON:Daniel Schober
definition source: GROUP:OBI:<http://purl.obofoundry.org/obo/obi&gt>
definition source: GROUP:OBI:<http://purl.obofoundry.org/obo/obi>

definition editor
type: AnnotationProperty
editor preferred label: definition editor
editor preferred label: term editor
has curation status: IAO_0000122
definition: Name of editor entering the definition in the file. The definition editor is a point of contact for information regarding the term. The definition editor may be, but is not always, the author of the definition, which may have been worked upon by several people
definition: Name of editor entering the term in the file. The term editor is a point of contact for information regarding the term. The term editor may be, but is not always, the author of the definition, which may have been worked upon by several people
editor note: 20110707, MC: label update to term editor and definition modified accordingly. See https://github.com/information-artifact-ontology/IAO/issues/115.
definition editor: PERSON:Daniel Schober
definition source: GROUP:OBI:<http://purl.obolibrary.org/obo/obi&gt>
definition source: GROUP:OBI:<http://purl.obolibrary.org/obo/obi>
label: term editor

alternative term
type: AnnotationProperty
editor preferred label: alternative label
editor preferred label: alternative term
has curation status: IAO_0000125
definition: A label for a class or property that can be used to refer to the class or property instead of the preferred rdfs:label. Alternative labels should be used to indicate community- or context-specific labels, abbreviations, shorthand forms and the like.
definition: An alternative name for a class or property which means the same thing as the preferred name (semantically equivalent)
definition editor: OBO Operations committee
definition editor: PERSON:Daniel Schober
definition source: GROUP:OBI:<http://purl.obolibrary.org/obo/obi&gt>
definition source: GROUP:OBI:<http://purl.obolibrary.org/obo/obi>
comment: Consider re-defing to: An alternative name for a class or property which can mean the same thing as the preferred name (semantically equivalent, narrow, broad or related).
label: alternative label
label: alternative_term

definition source
type: AnnotationProperty
editor preferred label: definition source
has curation status: IAO_0000122
definition: Formal citation, e.g. identifier in external database to indicate / attribute source(s) for the definition. Free text indicate / attribute source(s) for the definition. EXAMPLE: Author Name, URI, MeSH Term C04, PUBMED ID, Wiki uri on 31.01.2007
definition: formal citation, e.g. identifier in external database to indicate / attribute source(s) for the definition. Free text indicate / attribute source(s) for the definition. EXAMPLE: Author Name, URI, MeSH Term C04, PUBMED ID, Wiki uri on 31.01.2007
definition editor: PERSON:Daniel Schober
definition source: Discussion on obo-discuss mailing-list, see http://bit.ly/hgm99w
definition source: GROUP:OBI:<http://purl.obolibrary.org/obo/obi>
label: definition_source

has obsolescence reason
type: AnnotationProperty
editor preferred label: has obsolescence reason
definition: Relates an annotation property to an obsolescence reason. The values of obsolescence reasons come from a list of predefined terms, instances of the class obsolescence reason specification.
definition editor: PERSON:Alan Ruttenberg
definition editor: PERSON:Melanie Courtot

curator note
type: AnnotationProperty
editor preferred label: curator note
has curation status: IAO_0000122
definition: An administrative note of use for a curator but of no use for a user
definition editor: PERSON:Alan Ruttenberg

term tracker item
type: AnnotationProperty
editor preferred label: term tracker item
has curation status: IAO_0000125
definition: An IRI or similar locator for a request or discussion of an ontology term.
definition editor: Person: Jie Zheng, Chris Stoeckert, Alan Ruttenberg
definition source: Person: Jie Zheng, Chris Stoeckert, Alan Ruttenberg
comment: The 'tracker item' can associate a tracker with a specific ontology term.

imported from
type: AnnotationProperty

has ID digit count
type: AnnotationProperty
editor preferred label: has ID digit count
definition: Relates an ontology used to record id policy to the number of digits in the URI. The URI is: the 'has ID prefix' annotation property value concatenated with an integer in the id range (left padded with '0's to make this many digits)
definition editor: Person:Alan Ruttenberg

has ID range allocated
type: AnnotationProperty
editor preferred label: has ID range allocated
definition: Relates a datatype that encodes a range of integers to the name of the person or organization who can use those ids constructed in that range to define new terms
definition editor: Person:Alan Ruttenberg

has ID policy for
type: AnnotationProperty
editor preferred label: has ID policy for
definition: Relating an ontology used to record id policy to the ontology namespace whose policy it manages
definition editor: Person:Alan Ruttenberg

term replaced by
type: AnnotationProperty
editor preferred label: term replaced by
has curation status: IAO_0000125
definition: Add as annotation triples in the granting ontology
definition: Use on obsolete terms, relating the term to another term that can be used as a substitute
definition editor: Person:Alan Ruttenberg
definition source: Person:Alan Ruttenberg

NIAID GSCID-BRC alternative term
type: AnnotationProperty
editor preferred label: NIAID GSCID-BRC alternative term
has curation status: IAO_0000122
definition: An alternative term used by the National Institute of Allergy and Infectious Diseases (NIAID) Genomic Sequencing Centers for Infectious Diseases (GSCID) and Bioinformatics Resource Centers (BRC).
definition editor: PERSON: Chris Stoeckert, Jie Zheng
definition source: NIAID GSCID-BRC metadata working group
sub property of: alternative term

temporal interpretation
type: AnnotationProperty
editor preferred label: temporal interpretation
definition: An assertion that holds between an OWL Object Property and a temporal interpretation that elucidates how OWL Class Axioms that use this property are to be interpreted in a temporal context.

is direct form of
type: AnnotationProperty
definition: relation p is the direct form of relation q iff p is a subPropertyOf q, p does not have the Transitive characteristic, q does have the Transitive characteristic, and for all x, y: x q y -> exists z1, z2, ..., zn such that x p z1 ... z2n y
editor note: The general property hierarchy is: "directly P" SubPropertyOf "P" Transitive(P) Where we have an annotation assertion "directly P" "is direct form of" "P"

namespace
type: AnnotationProperty

contributor
type: AnnotationProperty

creator
type: AnnotationProperty

created_by
type: AnnotationProperty

creation_date
type: AnnotationProperty

has_alternative_id
type: AnnotationProperty

has_broad_synonym
type: AnnotationProperty
definition: An alternative label for a class or property which has a more general meaning than the preferred name/primary label.
definition editor: http://orcid.org/0000-0001-5208-3432
term tracker item: https://github.com/information-artifact-ontology/ontology-metadata/issues/18
label: has broad synonym
sub property of: alternative term

database_cross_reference
type: AnnotationProperty
definition: An annotation property that links an ontology entity or a statement to a prefixed identifier or URI.
definition: Reference database or publication source.
label: has cross-reference
label: has database cross reference
label: hasDbXref

has exact synonym
type: AnnotationProperty
definition: A property representing a fully qualified synonym, contains the string, term type, source, and an optional source code if appropriate. Each subfield is deliniated to facilitate interpretation by software.
definition: An alternative label for a class or property which has the exact same meaning than the preferred name/primary label.
definition: An alternative label for a given entity such as a commonly used abbreviation or synonym.
definition editor: http://orcid.org/0000-0001-5208-3432
term tracker item: https://github.com/information-artifact-ontology/ontology-metadata/issues/20
has exact synonym: FULL_SYN
has exact synonym: Synonym with Source Data
label: has_exact_synonym
sub property of: alternative term

has_narrow_synonym
type: AnnotationProperty
definition: An alternative label for a class or property which has a more specific meaning than the preferred name/primary label.
definition editor: http://orcid.org/0000-0001-5208-3432
term tracker item: https://github.com/information-artifact-ontology/ontology-metadata/issues/19
label: has narrow synonym
sub property of: alternative term

has related synonym
type: AnnotationProperty
definition: An alternative label for a class or property that has been used synonymously with the primary term name, but the usage is not strictly correct.
definition editor: http://orcid.org/0000-0001-5208-3432
term tracker item: https://github.com/information-artifact-ontology/ontology-metadata/issues/21
sub property of: alternative term

has synonym
type: AnnotationProperty

in_subset
type: AnnotationProperty
definition: In subset.

comment
type: AnnotationProperty
definition: Comment.

is defined by
type: AnnotationProperty

label
type: AnnotationProperty
editor preferred label: label
definition: A human readable name for this class.
comment: A human-readable name for the subject.

see also
type: AnnotationProperty

backward compatible with
type: AnnotationProperty

deprecated
type: AnnotationProperty

incompatible with
type: AnnotationProperty

prior version
type: AnnotationProperty

versionInfo
type: AnnotationProperty

part of
type: ObjectProperty

has part
type: ObjectProperty
type: TransitiveProperty
editor preferred label: has part
definition: a core relation that holds between a whole and its part
editor note: Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part.
editor note: Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/
editor note: Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.) A continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'.
alternative term: has_part
imported from: iao.owl
comment: Damion comments: In GenEpiO, If an entity has more than one value specification (in a conjunction), then it means the entitiy is a complex entity that can have a value for each specification. Minimum data requirements can be spelled out using some, min 1, max 10 etc. restrictions.

realized in
type: ObjectProperty

occurs in
type: ObjectProperty
editor preferred label: occurs in
definition: b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t
alternative term: occurs_in
alternative term: unfolds in
alternative term: unfolds_in
imported from: iao.owl
comment: Paraphrase of definition: a relation between a process and an independent continuant, in which the process takes place entirely within the independent continuant

contains process
type: ObjectProperty
editor preferred label: site of
definition: [copied from inverse property 'occurs in'] b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t
imported from: iao.owl
comment: Paraphrase of definition: a relation between an independent continuant and a process, in which the process takes place entirely within the independent continuant

obsolete has string specification of
type: ObjectProperty
deprecated: true

after
type: ObjectProperty
inverse of: before
has curation status: IAO_0000428
definition: T1 after t2 iff:= t2 before_or_simulataneous_with t1 and not (t1 simultaeous_with t2)
definition editor: Damion Dooley
comment: Damion Dooley's note: Intention is to have it be the inverse of "before". This allows axioms like "B after A" to be placed in class B, rather than having to phrase them as "A before B" in class A. I believe time dependency relations (conditions) don't imply existence by themselves. If B after A, and B exists, this doesn't necessarily mean that A exists, only that if A does exist, it must be before B. To add that extra existence implication probably requires the "causally downstream of" and "immediately causally downstream of" RO relations, in a closed system where B cannot exist any other way.

obsolete: has string value specification
type: ObjectProperty
sub property of: has value specification
range: GENEPIO_0002468
deprecated: true

obsolete: has categorical specification of
type: ObjectProperty
deprecated: true

obsolete: has categorical value specification
type: ObjectProperty
sub property of: has value specification
range: OBI_0001930
deprecated: true

hasCountryOfOrigin
type: ObjectProperty
imported from: hancestro.owl

has measurement unit label
type: ObjectProperty
sub property of: has part
type: FunctionalProperty
user interface label: has unit
imported from: iao.owl

is about
type: ObjectProperty
domain: IAO_0000030
has curation status: IAO_0000125
definition: A (currently) primitive relation that relates an information artifact to an entity.
editor note: 7/6/2009 Alan Ruttenberg. Following discussion with Jonathan Rees, and introduction of "mentions" relation. Weaken the is_about relationship to be primitive. We will try to build it back up by elaborating the various subproperties that are more precisely defined. Some currently missing phenomena that should be considered "about" are predications - "The only person who knows the answer is sitting beside me" , Allegory, Satire, and other literary forms that can be topical without explicitly mentioning the topic.
definition editor: person:Alan Ruttenberg
definition source: Smith, Ceusters, Ruttenberg, 2000 years of philosophy
imported from: iao.owl

mentions
type: ObjectProperty
sub property of: is about
has curation status: IAO_0000125
definition: An information artifact IA mentions an entity E exactly when it has a component/part that denotes E
editor note: 7/6/2009 Alan Ruttenberg. P4 RC1 munges our GCI so remove it for now: mentions some entity equivalentTo has_part some ('generically denotes' some entity)
editor note: 7/6/2009 Alan Ruttenberg: Add this relation following conversation with Jonathan Rees that N&S GCI for is_about was too strong. Really it was simply sufficient. To effect this change we introduce this relation, which is subproperty of is_about, and have previous GCI use this relation "mentions" in it's (logical) definition
definition editor: PERSON: Jonathan Rees
definition editor: Person: Alan Ruttenberg
imported from: iao.owl

denotes
type: ObjectProperty
sub property of: is about
definition: A primitive, instance-level, relation obtaining between an information content entity and some portion of reality. Denotation is what happens when someone creates an information content entity E in order to specifically refer to something. The only relation between E and the thing is that E can be used to 'pick out' the thing. This relation connects those two together. Freedictionary.com sense 3: To signify directly; refer to specifically
editor note: 2009-11-10 Alan Ruttenberg. Old definition said the following to emphasize the generic nature of this relation. We no longer have 'specifically denotes', which would have been primitive, so make this relation primitive. g denotes r =def r is a portion of reality there is some c that is a concretization of g every c that is a concretization of g specifically denotes r
definition editor: person:Alan Ruttenberg
definition source: Conversations with Barry Smith, Werner Ceusters, Bjoern Peters, Michel Dumontier, Melanie Courtot, James Malone, Bill Hogan
imported from: iao.owl

has measurement datum
type: ObjectProperty
sub property of: has part
has curation status: IAO_0000123
definition: relates a time stamped measurement datum to the measurement datum that was measured
definition editor: Alan Ruttenberg
imported from: iao.owl

has_specified_input
type: ObjectProperty
sub property of: has participant
inverse of: is_specified_input_of
domain: OBI_0000011
editor preferred label: has_specified_input
example of usage: see is_input_of example_of_usage
has curation status: IAO_0000122
definition: The inverse property of is_specified_input_of
editor note: 8/17/09: specified inputs of one process are not necessarily specified inputs of a larger process that it is part of. This is in contrast to how 'has participant' works.
definition editor: PERSON: Alan Ruttenberg
definition editor: PERSON: Bjoern Peters
definition editor: PERSON: Larry Hunter
definition editor: PERSON: Melanie Coutot

is_specified_input_of
type: ObjectProperty
range: OBI_0000011
editor preferred label: is_specified_input_of
example of usage: some Autologous EBV(Epstein-Barr virus)-transformed B-LCL (B lymphocyte cell line) is_input_for instance of Chromum Release Assay described at https://wiki.cbil.upenn.edu/obiwiki/index.php/Chromium_Release_assay
has curation status: IAO_0000122
definition: A relation between a planned process and a continuant participating in that process that is not created during the process. The presence of the continuant during the process is explicitly specified in the plan specification which the process realizes the concretization of.
definition editor: Alan Ruttenberg
definition editor: PERSON:Bjoern Peters

has_specified_output
type: ObjectProperty
sub property of: has participant
inverse of: is_specified_output_of
domain: OBI_0000011
editor preferred label: has_specified_output
has curation status: IAO_0000122
definition: The inverse property of is_specified_output_of
definition editor: PERSON: Alan Ruttenberg
definition editor: PERSON: Bjoern Peters
definition editor: PERSON: Larry Hunter
definition editor: PERSON: Melanie Courtot

is_manufactured_by
type: ObjectProperty
domain: material entity
editor preferred label: is_manufactured_by
example of usage: http://www.affymetrix.com/products/arrays/specific/hgu133.affx is_manufactered_by http://www.affymetrix.com/ (if we decide to use these URIs for the actual entities)
has curation status: IAO_0000123
definition: c is_manufactured_by o means that there was a process p in which c was built in which a person, or set of people or machines did the work(bore the "Manufacturer Role", and those people/and or machines were members or of directed by the organization to do this.
definition editor: Alan Ruttenberg
definition editor: Liju Fan
alternative term: has_make
alternative term: has_manufacturer

is_specified_output_of
type: ObjectProperty
range: OBI_0000011
editor preferred label: is_specified_output_of
has curation status: IAO_0000122
definition: A relation between a planned process and a continuant participating in that process. The presence of the continuant at the end of the process is explicitly specified in the objective specification which the process realizes the concretization of.
definition editor: Alan Ruttenberg
definition editor: PERSON:Bjoern Peters

has category label
type: ObjectProperty
sub property of: has part
domain: OBI_0000938
range: OBI_0000963
editor preferred label: has category label
has curation status: IAO_0000123
definition: A relation between a categorical measurement data item and the categorical label that indicates the value of that data item on the categorical scale.

specifies value of
type: ObjectProperty
sub property of: is about
domain: OBI_0001933
user interface label: specifies
editor preferred label: specifies value of
has curation status: IAO_0000123
definition: A relation between a value specification and an entity which the specification is about.

has value specification
type: ObjectProperty
sub property of: has part
domain: IAO_0000030
range: OBI_0001933
editor preferred label: has value specification
has curation status: IAO_0000120
definition: A relation between an information content entity and a value specification that specifies its value.
definition editor: PERSON: James A. Overton
definition source: OBI

characteristic of
type: ObjectProperty
type: FunctionalProperty
editor preferred label: inheres in
example of usage: this fragility is a characteristic of this vase
example of usage: this red color is a characteristic of this apple
definition: a relation between a specifically dependent continuant (the characteristic) and any other entity (the bearer), in which the characteristic depends on the bearer for its existence.
alternative term: inheres_in
temporal interpretation: RO_0001901
comment: Note that this relation was previously called "inheres in", but was changed to be called "characteristic of" because BFO2 uses "inheres in" in a more restricted fashion. This relation differs from BFO2:inheres_in in two respects: (1) it does not impose a range constraint, and thus it allows qualities of processes, as well as of information entities, whereas BFO2 restricts inheres_in to only apply to independent continuants (2) it is declared functional, i.e. something can only be a characteristic of one thing.
label: inheres in

has participant
type: ObjectProperty
property chain axiom: has part
editor preferred label: has participant
example of usage: this blood coagulation has participant this blood clot
example of usage: this investigation has participant this investigator
example of usage: this process has participant this input material (or this output material)
definition: a relation between a process and a continuant, in which the continuant is somehow involved in the process
editor note: Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time.
alternative term: has_participant
source: http://www.obofoundry.org/ro/#OBO_REL:has_participant

has quality
type: ObjectProperty
range: quality
example of usage: this apple has quality this red color
definition: a relation between an independent continuant (the bearer) and a quality, in which the quality specifically depends on the bearer for its existence
editor note: A bearer can have many qualities, and its qualities can exist for different periods of time, but none of its qualities can exist when the bearer does not exist.
alternative term: has_quality

has role
type: ObjectProperty
range: role
example of usage: this person has role this investigator role (more colloquially: this person has this role of investigator)
definition: a relation between an independent continuant (the bearer) and a role, in which the role specifically depends on the bearer for its existence
editor note: A bearer can have many roles, and its roles can exist for different periods of time, but none of its roles can exist when the bearer does not exist. A role need not be realized at all the times that the role exists.
alternative term: has_role

derives from
type: ObjectProperty
inverse of: derives into
example of usage: this cell derives from this parent cell (cell division)
example of usage: this nucleus derives from this parent nucleus (nuclear division)
has curation status: IAO_0000125
definition: a relation between two distinct material entities, the new entity and the old entity, in which the new entity begins to exist when the old entity ceases to exist, and the new entity inherits the significant portion of the matter of the old entity
editor note: This is a very general relation. More specific relations are preferred when applicable, such as 'directly develops from'.
alternative term: derives_from
curator note: This relation is taken from the RO2005 version of RO. It may be obsoleted and replaced by relations with different definitions. See also the 'develops from' family of relations.
in_subset: ro-eco

derives into
type: ObjectProperty
example of usage: this parent cell derives into this cell (cell division)
example of usage: this parent nucleus derives into this nucleus (nuclear division)
has curation status: IAO_0000125
definition: a relation between two distinct material entities, the old entity and the new entity, in which the new entity begins to exist when the old entity ceases to exist, and the new entity inherits the significant portion of the matter of the old entity
editor note: This is a very general relation. More specific relations are preferred when applicable, such as 'directly develops into'. To avoid making statements about a future that may not come to pass, it is often better to use the backward-looking 'derives from' rather than the forward-looking 'derives into'.
alternative term: derives_into
in_subset: ro-eco

location of
type: ObjectProperty
inverse of: located in
type: TransitiveProperty
editor preferred label: is location of
example of usage: my head is the location of my brain
example of usage: this cage is the location of this rat
definition: a relation between two independent continuants, the location and the target, in which the target is entirely within the location
editor note: Most location relations will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/
alternative term: location_of
temporal interpretation: RO_0001901

located in
type: ObjectProperty
type: TransitiveProperty
property chain axiom: part of
editor preferred label: located in
example of usage: my brain is located in my head
example of usage: this rat is located in this cage
definition: a relation between two independent continuants, the target and the location, in which the target is entirely within the location
editor note: Location as a relation between instances: The primitive instance-level relation c located_in r at t reflects the fact that each continuant is at any given time associated with exactly one spatial region, namely its exact location. Following we can use this relation to define a further instance-level location relation - not between a continuant and the region which it exactly occupies, but rather between one continuant and another. c is located in c1, in this sense, whenever the spatial region occupied by c is part_of the spatial region occupied by c1. Note that this relation comprehends both the relation of exact location between one continuant and another which obtains when r and r1 are identical (for example, when a portion of fluid exactly fills a cavity), as well as those sorts of inexact location relations which obtain, for example, between brain and head or between ovum and uterus
editor note: Most location relations will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/
alternative term: located_in
imported from: gaz.owl
temporal interpretation: RO_0001901
source: http://www.obofoundry.org/ro/#OBO_REL:located_in
in_subset: valid for go gp2term
label: located_in
label: located_in (type level)

aligned with
type: ObjectProperty
type: TransitiveProperty
has curation status: IAO_0000125
editor note: May be obsoleted, see https://github.com/oborel/obo-relations/issues/260
definition editor: https://orcid.org/0000-0002-7073-9172
temporal interpretation: RO_0001901

before or simultaneous with
type: ObjectProperty
definition editor: David Osumi-Sutherland
alternative term: <=
in_subset: ro-eco
comment: Primitive instance level timing relation between events

simultaneous with
type: ObjectProperty
sub property of: before or simultaneous with
type: SymmetricProperty
type: TransitiveProperty
definition: x simultaneous with y iff ω(x) = ω(y) and ω(α ) = ω(α), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point and '=' indicates the same instance in time.
definition editor: https://orcid.org/0000-0002-7073-9172
definition editor: David Osumi-Sutherland
in_subset: ro-eco
comment: t1 simultaneous_with t2 iff:= t1 before_or_simultaneous_with t2 and not (t1 before t2)

before
type: ObjectProperty
sub property of: before or simultaneous with
type: TransitiveProperty
definition: T1 before t2 iff:= t1 before_or_simulataneous_with t2 and not (t1 simultaeous_with t2)
definition editor: David Osumi-Sutherland
in_subset: ro-eco
comment: t1 before t2 iff:= t1 before_or_simulataneous_with t2 and not (t1 simultaeous_with t2)

immediately preceded by
type: ObjectProperty
sub property of: BFO_0000062
inverse of: immediately precedes
property chain axiom: starts with
property chain axiom: ends with
definition editor: David Osumi-Sutherland
alternative term: starts_at_end_of
comment: X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y)

immediately precedes
type: ObjectProperty
sub property of: BFO_0000063
property chain axiom: ends with
property chain axiom: starts with
definition editor: https://orcid.org/0000-0002-7073-9172
definition editor: David Osumi-Sutherland
alternative term: ends_at_start_of
alternative term: meets
is direct form of: BFO_0000063
in_subset: ro-eco
comment: X immediately_precedes_Y iff: end(X) simultaneous_with start(Y)

starts during
type: ObjectProperty
definition editor: David Osumi-Sutherland
alternative term: io
in_subset: ro-eco
comment: X starts_during Y iff: (start(Y) before_or_simultaneous_with start(X)) AND (start(X) before_or_simultaneous_with end(Y))

happens during
type: ObjectProperty
sub property of: starts during
type: TransitiveProperty
definition editor: David Osumi-Sutherland
alternative term: d
alternative term: during
in_subset: valid for go annotation extension
in_subset: valid for go ontology
in_subset: valid for gocam
in_subset: ro-eco
comment: X happens_during Y iff: (start(Y) before_or_simultaneous_with start(X)) AND (end(X) before_or_simultaneous_with end(Y))

has component
type: ObjectProperty
sub property of: has part
type: AsymmetricProperty
type: IrreflexiveProperty
has curation status: IAO_0000125
definition: w 'has component' p if w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type.
editor note: The definition of 'has component' is still under discussion. The challenge is in providing a definition that does not imply transitivity.
curator note: For use in recording has_part with a cardinality constraint, because OWL does not permit cardinality constraints to be used in combination with transitive object properties. In situations where you would want to say something like 'has part exactly 5 digit, you would instead use has_component exactly 5 digit.
temporal interpretation: RO_0001901
in_subset: ro-eco

adjacent to
type: ObjectProperty
type: SymmetricProperty
example of usage: A caterpillar walking on the surface of a leaf is adjacent_to the leaf, if one of the caterpillar appendages is touching the leaf. In contrast, a butterfly flying close to a flower is not considered adjacent, unless there are any touching parts.
example of usage: The epidermis layer of a vertebrate is adjacent to the dermis.
example of usage: The plasma membrane of a cell is adjacent to the cytoplasm, and also to the cell lumen which the cytoplasm occupies.
example of usage: The skin of the forelimb is adjacent to the skin of the torso if these are considered anatomical subdivisions with a defined border. Otherwise a relation such as continuous_with would be used.
has curation status: IAO_0000125
definition: x adjacent to y if and only if x and y share a boundary.
editor note: This relation acts as a join point with BSPO
definition editor: https://orcid.org/0000-0002-6601-2165
temporal interpretation: RO_0001901
in_subset: valid for go annotation extension
in_subset: valid for go ontology
in_subset: valid for gocam

Axiom
annotated source: adjacent to
annotated property: example of usage
annotated target: A caterpillar walking on the surface of a leaf is adjacent_to the leaf, if one of the caterpillar appendages is touching the leaf. In contrast, a butterfly flying close to a flower is not considered adjacent, unless there are any touching parts.

starts with
type: ObjectProperty
sub property of: has part
type: TransitiveProperty
example of usage: Every insulin receptor signaling pathway starts with the binding of a ligand to the insulin receptor
has curation status: IAO_0000125
definition: x starts with y if and only if x has part y and the time point at which x starts is equivalent to the time point at which y starts. Formally: α(y) = α(x) ∧ ω(y) < ω(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.
definition editor: https://orcid.org/0000-0002-6601-2165
definition editor: Chris Mungall
alternative term: started by
in_subset: ro-eco

ends with
type: ObjectProperty
sub property of: has part
type: TransitiveProperty
has curation status: IAO_0000125
definition: x ends with y if and only if x has part y and the time point at which x ends is equivalent to the time point at which y ends. Formally: α(y) > α(x) ∧ ω(y) = ω(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.
definition editor: https://orcid.org/0000-0002-6601-2165
definition editor: Chris Mungall
alternative term: finished by
in_subset: ro-eco

has input
type: ObjectProperty
sub property of: has participant
inverse of: input of
domain: process
property chain axiom: starts with
has curation status: IAO_0000125
definition: p has input c iff: p is a process, c is a material entity, c is a participant in p, c is present at the start of p, and the state of c is modified during p.
definition editor: https://orcid.org/0000-0002-6601-2165
alternative term: consumes
in_subset: valid for go annotation extension
in_subset: valid for go ontology
in_subset: valid for gocam
in_subset: ro-eco

has output
type: ObjectProperty
sub property of: has participant
inverse of: output of
property chain axiom: ends with
has curation status: IAO_0000125
definition: p has output c iff c is a participant in p, c is present at the end of p, and c is not present in the same state at the beginning of p.
definition editor: https://orcid.org/0000-0002-6601-2165
alternative term: produces
in_subset: valid for go annotation extension
in_subset: valid for go ontology
in_subset: valid for gocam
in_subset: ro-eco

member of
type: ObjectProperty
sub property of: part of
inverse of: has member
type: AsymmetricProperty
type: IrreflexiveProperty
example of usage: An organism that is a member of a population of organisms
definition: is member of is a mereological relation between a item and a collection.
alternative term: is member of
alternative term: member part of
definition source: SIO
temporal interpretation: RO_0001901

has member
type: ObjectProperty
sub property of: has part
type: IrreflexiveProperty
definition: has member is a mereological relation between a collection and an item.
definition source: SIO
temporal interpretation: RO_0001901

input of
type: ObjectProperty
definition: inverse of has input
definition editor: https://orcid.org/0000-0002-6601-2165
in_subset: RO_0002259
in_subset: ro-eco

output of
type: ObjectProperty
definition: inverse of has output
definition editor: https://orcid.org/0000-0002-6601-2165
in_subset: RO_0002259
in_subset: ro-eco

causally downstream of
type: ObjectProperty
sub property of: BFO_0000062
inverse of: causally upstream of
has curation status: IAO_0000428
definition: inverse of upstream of
definition editor: https://orcid.org/0000-0002-6601-2165

causally upstream of
type: ObjectProperty
sub property of: BFO_0000063
type: TransitiveProperty
definition: p is causally upstream of q iff p is causally related to q, the end of p precedes the end of q, and p is not an occurrent part of q.
definition editor: https://orcid.org/0000-0002-6601-2165
in_subset: valid for go annotation extension
in_subset: valid for gocam

transmitted by
type: ObjectProperty
example of usage: all dengue disease transmitted by some mosquito
definition: A relationship that holds between a disease and organism
editor note: Add domain and range constraints
definition editor: https://orcid.org/0000-0002-6601-2165

produced by
type: ObjectProperty
domain: material entity
range: material entity
has curation status: IAO_0000125
definition: a produced_by b iff some process that occurs_in b has_output a.
definition editor: https://orcid.org/0000-0001-9114-8737
in_subset: ro-eco

has numerator
type: ObjectProperty
type: AsymmetricProperty
definition: the relationship between a fraction and the number above the line
definition editor: Alejandra Gonzalez-Beltran
definition editor: Orlaith Burke
definition editor: Philippe Rocca-Serra
definition source: AGB
imported from: stato.owl

has denominator
type: ObjectProperty
definition: the relationship between a fraction and the number below the line (or divisor)
definition editor: Alejandra Gonzalez-Beltran
definition editor: Orlaith Burke
definition editor: Philippe Rocca-Serra
definition source: AGB
imported from: stato.owl

exactMatch
type: ObjectProperty
has curation status: IAO_0000122
definition: link two concepts, indicating a high degree of confidence that the concepts can be used interchangeably across a wide range of information retrieval applications. skos:exactMatch is a transitive property, and is a sub-property of skos:closeMatch.
definition source: skos:exactMatch

local names
type: ObjectProperty
definition: An object relation between a LinkML SlotDefinition to a LocalName.

obsolete: has primitive data type
type: DatatypeProperty
definition editor: Damion Dooley
term replaced by: type uri
deprecated: true

has specified value
type: DatatypeProperty
sub property of: topDataProperty
domain: OBI_0001933
editor preferred label: has specified value
has curation status: IAO_0000123
definition: A relation between a value specification and a literal.
editor note: This is not an RDF/OWL object property. It is intended to link a value found in e.g. a database column of 'M' (the literal) to an instance of a value specification class, which can then be linked to indicate that this is about the biological gender of a human subject.
definition source: OBI

abstract
type: DatatypeProperty
sub property of: topDataProperty
range: boolean
definition: An abstract class is a high level class or slot that is typically used to group common slots together and cannot be directly instantiated.

comments
type: DatatypeProperty
sub property of: topDataProperty
definition: Notes and comments about an element intended for external consumption.

created on
type: DatatypeProperty
sub property of: topDataProperty
range: Datatype
  union of: date
  union of: dateTime
  union of: dateTimeStamp
definition: Date/time at which the element was created.

data collection state
type: DatatypeProperty
sub property of: topDataProperty
example of usage: Not Applicable; Missing; Not Collected; Not Provided; Restricted Access
definition: A value (string or URI) indicating the data collection state an instance of a slot has.

description
type: DatatypeProperty
sub property of: topDataProperty
definition: A description of the element's purpose and use

exact mappings
type: DatatypeProperty
sub property of: topDataProperty
definition: A list of terms from different schemas or terminology systems that have identical meaning.

from schema
type: DatatypeProperty
range: anyURI
definition: Id of the schema that defined the element.

imported from
type: DatatypeProperty
sub property of: topDataProperty
range: string
definition: The imports entry that this element was derived from. Empty means primary source

local_name_source
type: DatatypeProperty
sub property of: topDataProperty
domain: LocalName
range: NCName
definition: The ncname of the source of the name.
definition editor: http://orcid.org/0000-0002-8844-9165
date: 2021-04-26T22:15:07Z

local name value
type: DatatypeProperty
sub property of: topDataProperty
domain: LocalName
range: string
definition: A name assigned to an element in a given ontology.

maximum value
type: DatatypeProperty
sub property of: topDataProperty
range: int
definition: For slots with ranges of type number, the value must be equal to or lowe than this

minimum value
type: DatatypeProperty
sub property of: topDataProperty
range: int
definition: For slots with ranges of type number, the value must be equal to or higher than this

multivalued
type: DatatypeProperty
sub property of: topDataProperty
range: boolean
definition: true means that slot can have more than one value

name
type: DatatypeProperty
sub property of: topDataProperty
range: string
definition: The unique name of the element within the context of the schema. Name is combined with the default prefix to form the globally unique subject of the target class.

pattern
type: DatatypeProperty
sub property of: topDataProperty
range: string
definition: The string value of the slot must conform to this regular expression

permissible values
type: DatatypeProperty
sub property of: topDataProperty
definition: A list of possible values for a slot range.

recommended
type: DatatypeProperty
sub property of: topDataProperty
range: boolean
definition: true if this slot is not required, but is recommended.

required
type: DatatypeProperty
sub property of: topDataProperty
range: boolean
definition: true means that the slot must be present in the loaded definition.

see also
type: DatatypeProperty
sub property of: topDataProperty
range: anyURI
definition: A reference.

status
type: DatatypeProperty
sub property of: topDataProperty
range: anyURI
example of usage: IAO:0000122 ('ready for release')
definition: status of the element.

type uri
type: DatatypeProperty
sub property of: topDataProperty
definition: The uri that defines the possible values for the type definition
comment: URI is typically drawn from the set of URI's defined in OWL (https://www.w3.org/TR/2012/REC-owl2-syntax-20121211/#Datatype_Maps)

value description
type: DatatypeProperty
sub property of: topDataProperty
domain: Example
range: string
definition: Description of what the value is doing.

values from
type: DatatypeProperty
sub property of: topDataProperty
range: anyURI
definition: The identifier of a "value set" -- a set of identifiers that form the possible values for the range of a slot

sequence accession
type: Class
subclass of: sequence identifier
definition: A persistent, unique identifier of a molecular sequence database entry.
definition editor: Damion Dooley
imported from: EDAM

database field name
type: Class
subclass of: IAO_0000577
definition: The name of a field in a database.

animal - laboratory
type: Class
subclass of: animal specimen
definition: no definition at source
imported from: MESH

animal - wild
type: Class
subclass of: animal specimen
definition: Animals considered to be wild or feral or not adapted for domestic use. It does not include wild animals in zoos for which ANIMALS, ZOO is available.
imported from: MESH

base composition
type: Class
subclass of: assembly quality control datum
has curation status: IAO_0000428
definition: the relative amounts of the purines and pyrimidines in a nucleic acid.
imported from: MESH
has exact synonym: base composition base compositions base ratio base ratios gc composition gc compositions gc content gc contents gc g+c composition g+c compositions g+c content g+c contents guanine + cytosine composition guanine + cytosine content

animal - pet
type: Class
subclass of: animal specimen
definition: Animals kept by humans for companionship and enjoyment, as opposed to DOMESTIC ANIMALS such as livestock or farm animals, which are kept for economic reasons.
imported from: MESH

livestock
type: Class
subclass of: animal specimen
definition: Domesticated farm animals raised for home use or profit but excluding POULTRY. Typically livestock includes CATTLE; SHEEP; HORSES; SWINE; GOATS; and others.
imported from: MESH

purely intentional entity
type: Class
subclass of: generically dependent continuant
definition: A generically dependent continuant which derives its existence and its entire endowment from an intending experience of consciousness (an "act") that is laden with determinate, uniformily structured content.
imported from: apollo sv.owl
comment: MB: Right now we represent 'purely intentional entities' as siblings to 'information content entities'. Given their nature I am not entirly sure that this is correct. It seems that both 'information content entity' and 'simulation' are subclass to 'purely intentional entity'.

infectious period duration
type: Class
subclass of: duration
subclass of: EFO_0000433
definition: A duration of the parts of an infection during which the host bears an infectious disposition in a population of hosts.
definition editor: Mathias Brochhausen
imported from: apollo sv.owl
comment: MB: In order to get the temporal occupation relations I added properties that I renamed with BFO2 URIs.

latent period duration
type: Class
subclass of: duration
subclass of: EFO_0000433
definition: A duration of the time interval between the host acquiring an infection and the host bearing a contagiousness disposition during the same disease course within a population of hosts.
definition editor: Mathias Brochhausen
imported from: apollo sv.owl
comment: MB: In order to get the temporal occupation relations I added properties that I renamed with BFO2 URIs
comment: The duration of the period between when an organism becomes infected and when it becomes infectious.

count of simulated exposed population
type: Class
subclass of: population count
subclass of: STATO_0000047
definition editor: Mathias Brochhausen
imported from: apollo sv.owl

count of simulated contagious population
type: Class
subclass of: population count
subclass of: STATO_0000047
definition editor: Mathias Brochhausen
imported from: apollo sv.owl

count of simulated resistant population
type: Class
subclass of: population count
subclass of: STATO_0000047
definition editor: Mathias Brochhausen
imported from: apollo sv.owl

count of simulated population
type: Class
subclass of: STATO_0000047
definition: The count of (simulated organisms) in a simulated population.
definition editor: Mathias Brochhausen
imported from: apollo sv.owl
comment: MW: I know this causes problems with our set-theoretic definition. Unfortunately the compartmental models produce fractional counts at each of their time steps, including the final step. Any ideas? I’ve considered and rejected allowing individual organisms to be fractional. Perhaps if we just replace the term “cardinality” in the definition with ‘computed size’

simulated population
type: Class
subclass of: simulation
subclass of: IAO_0000027
definition: A simulation of a population or populations of organisms of a particular biological taxon that simulates a particular type of event or types of event that occur in a specified time interval.
definition editor: Mathias Brochhausen
imported from: apollo sv.owl

count
type: Class
subclass of: IAO_0000109
definition: A measurement datum that is the output of counting.
definition editor: Mathias Brochhausen
imported from: apollo sv.owl

counting
type: Class
subclass of: OBI_0000011
definition: The planned process of finding the number of elements in a finite set of objects.
definition editor: Mathias Brochhausen
definition source: http://en.wikipedia.org/wiki/Counting
imported from: apollo sv.owl

hospital patient population census
type: Class
subclass of: population census
definition editor: Mathias Brochhausen
imported from: apollo sv.owl
comment: Motivating use case is to cover Synthia data, and possibly configuration/output of the MRSA simulator in the MIDAS community (CA-MRSA Repast).

simulation
type: Class
subclass of: purely intentional entity
definition: A purely intentional entity that simulates an entity and its properties.
imported from: apollo sv.owl

count of contagious population
type: Class
subclass of: population count
subclass of: STATO_0000047
definition: The count of individuals in a contagious population (empirical or virtual).
imported from: apollo sv.owl

count of resistant population
type: Class
subclass of: population count
subclass of: STATO_0000047
definition: The count of individuals in a resistant population (empirical or virtual).
imported from: apollo sv.owl

infection acquisition
type: Class
subclass of: GO_0044409
definition: The biological process of pathogen organism(s) of a particular biological taxon entering (the tissues of the body of) a host organism of another taxon from a contagious host or a contaminated thing and reproducing using host resources
definition editor: Mathias Brochhausen
imported from: apollo sv.owl
comment: Apollo-SV defines infection acquisition rather than infection transmission, which is the direction of movement of a pathogen in current use. The Apollo-SV conceptualization is simpler when accounting for infections acquired from contaminated things. The likelihood of acquisition is expressed by parameters such as the basic reproduction rate and transmission coefficient. An infection is acquired from an infectious organism or a contaminated thing.
comment: Cannot acquire from colonized host directly - contamination results from colonized or contaminated thing and new host picks it up from contaminated thing

population census
type: Class
subclass of: census
subclass of: Restriction
  on property: is about
  some values from: GENEPIO_0001925
subclass of: Restriction
  on property: is about
  some values from: OBI_0000181
subclass of: Restriction
  on property: has component
  qualified cardinality: 1
  on class: Class
    intersection of: GENEPIO_0002144
    intersection of: Restriction
      on property: specifies value of
      some values from: STATO_0000047
subclass of: Restriction
  on property: has component
  qualified cardinality: 1
  on class: Class
    intersection of: GENEPIO_0002148
    intersection of: Restriction
      on property: specifies value of
      some values from: census reference date
has curation status: IAO_0000428
definition: A census that is the outcome of a population survey.
definition editor: Damion Dooley
imported from: apollo sv.owl

nursery school student population census
type: Class
subclass of: school student population census
imported from: apollo sv.owl
comment: Motivating use case is Synthia synthetic population data.

primary school student population census
type: Class
subclass of: school student population census
imported from: apollo sv.owl
comment: Motivating use case is Synthia synthetic population data.

secondary school student population census
type: Class
subclass of: school student population census
imported from: apollo sv.owl
comment: Motivating use case is Synthia synthetic population data.

census
type: Class
subclass of: IAO_0000100
subclass of: Restriction
  on property: has part
  some values from: census reference date
definition: A data set of a specific entity in a specified region at a specified time.
definition editor: Mathias Brochhausen
imported from: apollo sv.owl

school student population census
type: Class
subclass of: population census
definition editor: Mathias Brochhausen
imported from: apollo sv.owl
comment: Motivating use case is Synthia synthetic population data.

transmission probability
type: Class
subclass of: probability
definition: The probability of the occurence of an infection acquisition from one infected organism to another when in contact.
imported from: apollo sv.owl

asymptomatic host
type: Class
subclass of: host organism
subclass of: IDO_0000531
imported from: apollo sv.owl

host organism
type: Class
subclass of: OBI_0100026
definition: An organism of a particular biological taxon that is the site of reproduction of an organism of a different taxon.
imported from: apollo sv.owl

census reference date
type: Class
subclass of: OBI_0001508
definition: A information content entity that specifies the date of a census.
definition editor: Mathias Brochhausen
imported from: apollo sv.owl

duration
type: Class
subclass of: IAO_0000416
definition: A measurement datum that quantifies a temporal region that is occupied by a processual entity.
definition editor: Mathias Brochhausen
imported from: apollo sv.owl

delay from symptoms to treatment
type: Class
subclass of: duration
subclass of: EFO_0000433
definition: The duration between the appearance of symptoms of a disease and the start of a treatment.
definition editor: Mathias Brochhausen
imported from: apollo sv.owl

infection acquisition from infectious host
type: Class
subclass of: infection acquisition
definition: An infection acquisition whereby a susceptible host acquires an infection from an infectious host.
definition editor: William R. Hogan
imported from: apollo sv.owl

time delay to case detection
type: Class
subclass of: duration
subclass of: EFO_0000433
definition: The duration from the time an organism satisfies a case definition until a process or system detects the organism as satisfying that case definition
definition editor: Mathias Brochhausen
imported from: apollo sv.owl

duration of treatment course
type: Class
subclass of: duration
subclass of: EFO_0000433
definition: A duration that measures the temporal interval occupied by a treatment course.
definition editor: Mathias Brochhausen
imported from: apollo sv.owl

number of doses in a treatment course
type: Class
subclass of: count
subclass of: STATO_0000047
definition: The count of the number of doses that are part of a treatment course.
definition editor: Mathias Brochhausen
imported from: apollo sv.owl

time delay of treatment detection
type: Class
subclass of: duration
subclass of: EFO_0000433
definition: The duration from the time an individual receives a treatment until the time a system designed to detect that the treatment occurred detects it in a population
definition editor: William R. Hogan
imported from: apollo sv.owl

probability
type: Class
subclass of: IAO_0000027
definition: A data item that is about a proposition and has a numeric value between 0 and 1, inclusive, that is the output of some process of inference, such that 1) logical falsehoods and logical truths are assigned a value of 0 and 1, respectively, while contingent propositions are assigned some intermediate value; and 2) the process of inference conforms with rules for the calculation of probabilities, and that any interpretation of probability must specify the extent to which probabilities might be used to constrain the degrees of belief of rational agents.
definition editor: Matthew Diller
definition editor: William R. Hogan
imported from: apollo sv.owl
comment: The first criterion is derived from Kolmogorov's Probability Calculus, while the second is derived from Salmon's Admissibility and Applicability Criteria of Adequacy. Salmon's ascertainability criterion is subsumed by the definition for 'data item'.

count of disease cases
type: Class
subclass of: population count
definition: A count of individuals in a population who meet the criteria of some case definition during some time interval.
definition editor: Matthew Diller
definition editor: William R. Hogan
imported from: apollo sv.owl

count of cases in an epidemic
type: Class
subclass of: count of disease cases
definition: A count of disease cases in an infected population that meet the case definition criteria within a particular epidemic interval.
definition editor: Matthew Diller
definition editor: William R. Hogan
imported from: apollo sv.owl

population colonization census
type: Class
subclass of: population census
definition: A population census about the organisms specific to that population that were the host in some colonization acquisition.
definition editor: Matthew Diller
definition editor: William R. Hogan
imported from: apollo sv.owl

infection acquisition through sexual activity with infectious host
type: Class
subclass of: infection acquisition from infectious host
subclass of: exposure by human contact
definition: An infection acquistion from infectious host that is causally downstream of some potentially infectious sexual contacting
definition editor: Matthew Diller
imported from: apollo sv.owl
comment: Note that infections that are acquired in this manner do not fall within the class of sexually transmitted infections (STI's), ipso facto. This type of transmission can also occur with non-STI pathogens--such as meningitis and Zika.

population count
type: Class
subclass of: count
definition: A count of simulated or physical individuals in a population.
definition editor: Matthew Diller
imported from: apollo sv.owl

antimicrobial phenotype
type: Class
subclass of: quality
subclass of: IAO_0000030
subclass of: Restriction
  on property: is about
  some values from: IDO_0000581
definition: Qualitative description of a microbial response to antimicrobial agents and the expected clinical outcome. Bacteria may be susceptible or resistant to a broad range of antibiotic drugs or drug classes, with several intermediate states or phases.
imported from: aro.owl

intermediate antimicrobial phenotype
type: Class
subclass of: CLSI antimicrobial phenotype
user interface label: intermediate
definition: Intermediate sensitivity of a bacterial strain to a given antibiotic occurs when it is inhibited by a concentration of the drug that is associated with uncertain therapeutic effect. The elimination of intermediate phenotype bacteria may depend on the site of infection and/or the concentration of the administered drug. Definition from https://clsi.org.
imported from: aro.owl
has_alternative_id: I

resistant antimicrobial phenotype
type: Class
subclass of: CLSI antimicrobial phenotype
user interface label: resistant
definition: A bacterial strain is said to be resistant to a given antibiotic when it is inhibited in vitro by a concentration of this drug that is associated with a high likelihood of therapeutic failure.
imported from: aro.owl
has_alternative_id: R

susceptible antimicrobial phenotype
type: Class
subclass of: CLSI antimicrobial phenotype
user interface label: susceptible
definition: A bacterial strain is said to be susceptible to a given antibiotic when it is inhibited in vitro by a concentration of a drug that is associated with a high likelihood of therapeutic success.
imported from: aro.owl
has_alternative_id: S
has exact synonym: sensitive

nonsusceptible antimicrobial phenotype
type: Class
subclass of: CLSI antimicrobial phenotype
user interface label: nonsusceptible
definition: A bacterial strain is said to be nonsusceptible to a given antibiotic drug if it demonstrates either an intermediate or resistant phenotype when exposed to a concentration of a drug that is associated with a high likelihood of therapeutic failure, i.e. if the bacterial strain is not susceptible to the antibiotic drug but not necessarily totally resistant under all conditions. Definition from https://clsi.org.
imported from: aro.owl
has_alternative_id: NS
has exact synonym: nonsensitive
has exact synonym: nonsensitive antimicrobial phenotype

susceptible dose dependent antimicrobial phenotype
type: Class
subclass of: CLSI antimicrobial phenotype
user interface label: susceptible - dose dependent
definition: A bacterial strain is said to be susceptible-dose dependent (SDD) to a given antibiotic when growth is inhibited with a high likelihood of therapeutic success, but when multiple approved dosing options exist. When a higher or more frequent dose is used, the predicted therapeutic result is the same as for susceptible individuals.
imported from: aro.owl
has_alternative_id: SSD
has exact synonym: SDD
has exact synonym: Sensitive dose dependent antimicrobial phenotype
has exact synonym: sensitive - dose dependent

multidrug resistance antimicrobial phenotype
type: Class
subclass of: antimicrobial phenotype
definition: Multidrug-resistant organisms are defined as bacterial strains that have become resistant to multiple classes of antibacterial drugs or other agents. The phenotype of these organisms is defined by the spectrum of antibiotic drug classes to which that organism is resistant. Often, these organisms are susceptible to a narrow range of available drugs, making treatment difficult and urgent.
imported from: aro.owl
has exact synonym: MDRO

antimicrobial resistance testing reference standard
type: Class
subclass of: IAO_0000033
definition: Uses breakpoints to create standards for interpreting the clinical outcome of an MIC value for a particular microbial species and antimicrobial agent.
imported from: aro.owl

British Society for Antimicrobial Chemotherapy (BSAC)
type: Class
subclass of: antimicrobial resistance testing reference standard
definition: BSAC is a British inter-professional organisation involved in antibiotic education, research and leadership. Baquero F. found that the BSAC system recommends lower breakpoints than the consensus standard of all systems for antimicrobial susceptibility testing used in Europe (BSAC, DIN, SFM, SIR, NCCLS and WRG).
imported from: aro.owl
has_alternative_id: BSAC

Clinical and Laboratory Standards Institute (CLSI)
type: Class
subclass of: antimicrobial resistance testing reference standard
definition: The Clinical and Laboratory Standards Institute develops and implements clinical laboratory testing standards.
imported from: aro.owl
has_alternative_id: CLSI
has exact synonym: NCCLS
has exact synonym: National Committee on Clinical Laboratory Standards (NCCLS)
comment: On January 1, 2005 the National Committee on Clinical Laboratory Standards (NCCLS) changed its name to CLSI

Deutsches Institut für Normung (DIN)
type: Class
subclass of: antimicrobial resistance testing reference standard
definition: DIN is recognized by the Federal Government of Germany as the competent standards organization for Germany and as the national standards body representing Germany in non-governmental international standards organizations. Baquero F. found that the DIN system recommends lower breakpoints than the consensus standard of all systems for antimicrobial susceptibility testing used in Europe (BSAC, DIN, SFM, SIR, NCCLS and WRG).
imported from: aro.owl
has_alternative_id: DIN

European Committee on Antimicrobial Susceptibility Testing (EUCAST)
type: Class
subclass of: antimicrobial resistance testing reference standard
definition: EUCAST is a standing committee jointly organized by ESCMID, ECDC and European national breakpoint committees; it deals with breakpoints and technical aspects of phenotypic in-vitro antimicrobial susceptibility testing.
imported from: aro.owl
has_alternative_id: EUCAST

Société Française de Microbiologie (SFM)
type: Class
subclass of: antimicrobial resistance testing reference standard
definition: The French Society of Microbiology (SFM) is a non-profit association which aims to bring together microbiologists from French-speaking countries, working in the domains of bacteria, viruses, Fungi and parasites, and related medical, industrial and environmental microbiology, physiology, genetics, taxonomy, hygiene, and antimicrobial agents. Baquero F. found that the SFM system recommends higher breakpoints than the consensus standard of all systems for antimicrobial susceptibility testing used in Europe (BSAC, DIN, SFM, SIR, NCCLS and WRG).
imported from: aro.owl
has_alternative_id: SFM

MIC value
type: Class
subclass of: IAO_0000109
definition: The measured or quantified MIC.
imported from: aro.owl

MIC unit
type: Class
subclass of: IAO_0000109
definition: Unit for measurement of minimum inhibitory concentration (MIC).
imported from: aro.owl

in-vitro microbial susceptibility test
type: Class
subclass of: OBI_0000070
definition: An experimental test conducted outside of a living organism, usually in a tube or plate.
imported from: aro.owl

antimicrobial resistance test platform
type: Class
subclass of: OBI_0000968
definition: System of analysis for determining antimicrobial susceptibility.
imported from: aro.owl

diffusion method
type: Class
subclass of: in-vitro microbial susceptibility test
subclass of: NCIT C85540
definition: Microbial species are inoculated in a growth medium onto which antimicrobial agents are transferred by diffusion.
imported from: aro.owl

thin-layer chromatography (TLC)-bioautography
type: Class
subclass of: in-vitro microbial susceptibility test
definition: Components of complex mixtures such as plant extracts are separated across a TLC plate and tested for anti-microbial activity.
imported from: aro.owl

time-kill test
type: Class
subclass of: in-vitro microbial susceptibility test
definition: Allows for time-dependent or concentration-dependent analysis of antimicrobial effects. Several tubes of broth culture medium containing a suspension of the test microbe are treated with varying concentrations of the antimicrobial agent and the percentage of dead cells determined at various time points.
imported from: aro.owl
has exact synonym: time kill curve

ATP bioluminescence assay
type: Class
subclass of: in-vitro microbial susceptibility test
definition: Relies on the indirect measurement of microbe populations by quantifying microbial ATP production.
imported from: aro.owl

flow cytofluorometric method
type: Class
subclass of: in-vitro microbial susceptibility test
definition: Microbes exposed to antimicrobial agents are then stained with the intercalating agent propidium iodide. Damaged cells emit a positive signal that is detected by flow cytometry analysis. Flow cytometry can also be used to discriminate between dead, damaged and live cells.
imported from: aro.owl

mechanism-specific test
type: Class
subclass of: in-vitro microbial susceptibility test
definition: Test that directly detect the presence of a particular resistance mechanism.
imported from: aro.owl

broth dilution method
type: Class
subclass of: in-vitro microbial susceptibility test
subclass of: NCIT C85540
definition: The microbial species are inoculated in liquid growth medium containing incremental dilutions (usually 2-fold) of the antimicrobial agent.
imported from: aro.owl

automated testing platform
type: Class
subclass of: antimicrobial resistance test platform
definition: Automated system of analysis for determining antimicrobial susceptibility.
imported from: aro.owl

manual testing platform
type: Class
subclass of: antimicrobial resistance test platform
definition: Non-automated system of analysis for determining antimicrobial susceptibility.
imported from: aro.owl
has exact synonym: noncommercial testing platform

MicroScan
type: Class
subclass of: automated testing platform
definition: Specific automated system of analysis for determining antimicrobial susceptibility developed by Omron.
imported from: aro.owl

Phoenix
type: Class
subclass of: automated testing platform
definition: Specific automated system of analysis for determining antimicrobial susceptibility developed by Becton Dickinson.
imported from: aro.owl

Sensitire
type: Class
subclass of: automated testing platform
definition: Specific automated system of analysis for determining antimicrobial susceptibility developed by Trek, Thermo Fisher Scientific.
imported from: aro.owl

Vitek System
type: Class
subclass of: automated testing platform
definition: Specific automated system of analysis for determining antimicrobial susceptibility developed by bioMérieux.
imported from: aro.owl

automated testing platform vendor
type: Class
subclass of: NCIT C25392
definition: Vendor of automated system of analysis for determining antimicrobial susceptibility.
imported from: aro.owl

Becton Dickinson
type: Class
subclass of: automated testing platform vendor
definition: Specific vendor of automated system of analysis for determining antimicrobial susceptibility headquartered in New Jersey, USA. Becton Dickinson is the developer of the Phoenix automated testing platform.
imported from: aro.owl

bioMérieux
type: Class
subclass of: automated testing platform vendor
definition: Specific vendor of automated system of analysis for determining antimicrobial susceptibility headquartered in France. bioMérieux is the developer of the Vitek automated testing platform.
imported from: aro.owl

Siemens
type: Class
subclass of: automated testing platform vendor
definition: Specific vendor of automated system of analysis for determining antimicrobial susceptibility headquartered in Berlin and Munich.
imported from: aro.owl

Omron
type: Class
subclass of: automated testing platform vendor
definition: Specific vendor of automated system of analysis for determining antimicrobial susceptibility based in Japan. Omron is the developer of the MicroScan automated testing platform.
imported from: aro.owl

Trek
type: Class
subclass of: automated testing platform vendor
definition: Specific vendor of automated system of analysis for determining antimicrobial susceptibility that was acquired by Thermo Fisher Scientific Inc. Thermo Fisher Scienfiic Inc. is headquartered in Massachusetts, USA. Trek is the developer of the Sensitire automated testing platform.
imported from: aro.owl
has exact synonym: Thermo Fisher Scientific

micro broth dilution method
type: Class
subclass of: broth dilution method
definition: Broth dilution conducted on 96-well microtiter plates (≤200 µL per well).
imported from: aro.owl

agar well diffusion method
type: Class
subclass of: diffusion method
definition: This test is a common method of evaluating the antimicrobial activity of plants or microbial extracts. In this method, bacteria are inoculated onto agar plates and the antimicrobial agent is injected into the plate and allowed to diffuse.
imported from: aro.owl

agar plug diffusion method
type: Class
subclass of: diffusion method
definition: This method is commonly used to study the antagonism between microorganisms. The first bacterial strain is inoculated onto agar plates in tight streaks. The bacteria will secrete molecules that diffuse in the agar medium; this medium is cut and placed on another agar plate inoculated with another microorganism.
imported from: aro.owl

cross streak method
type: Class
subclass of: diffusion method
definition: This method is commonly used to study the antagonism between microorganisms. The microbial strain of interest is seeded by a single streak in the center of the agar plate. After incubation, the plate is seeded with the second microorganism by single streak perpendicular to the central streak.
imported from: aro.owl

agar diffusion bioautography
type: Class
subclass of: thin-layer chromatography (TLC)-bioautography
definition: The antimicrobial agent is transferred from a chromatogram to an agar plate previously inoculated with the test microorganism.
imported from: aro.owl

direct bioautography
type: Class
subclass of: thin-layer chromatography (TLC)-bioautography
definition: A developed TLC plate is dipped into or sprayed with a microbial suspension and then incubated. Live microbial cells are visualized using tetrazolium salts.
imported from: aro.owl

agar overlay bioautography
type: Class
subclass of: thin-layer chromatography (TLC)-bioautography
definition: The TLC plate is covered with a molten agar medium seeded with the test microbe and the antimicrobial compounds are allowed to diffuse onto the agar medium. Tetrazolium dye staining allows for visualization.
imported from: aro.owl
has exact synonym: agar overlay bioassay

chromogenic cephalosporinase test
type: Class
subclass of: mechanism-specific test
definition: Assay for beta lactamase detection.
imported from: aro.owl

chloramphenicol acetyltransferase assay (CAT)
type: Class
subclass of: mechanism-specific test
definition: Commercial colorimetric assay for detection of chloramphenicol modifying enzyme chloramphenicol acetyltransferase.
imported from: aro.owl

antimicrobial resistance tissue specificity
type: Class
subclass of: awaiting ontology review
user interface feature: depth:1
definition: The tissue type used to select breakpoints from a particular standard, for the interpretation of MIC results.
imported from: aro.owl

EUCAST antimicrobial phenotype
type: Class
subclass of: antimicrobial phenotype
definition: Qualitative description of a microbial response to antimicrobial agents as described by EUCAST using breakpoints determined through in-vitro testing. These breakpoints are determined irrespective of tissue specificity of infection.
imported from: aro.owl

wild-type
type: Class
subclass of: EUCAST antimicrobial phenotype
definition: A microbe whose susceptibility to antibiotics is comparable to that of a reference susceptible microbe, meaning that the microbe is sensitive to the particular antibiotic.
imported from: aro.owl

non wild-type
type: Class
subclass of: EUCAST antimicrobial phenotype
definition: A microbe whose susceptibility to antibiotics differs from that of a reference susceptible microbe, meaning that the microbe is resistant to the particular antibiotic.
imported from: aro.owl

CLSI antimicrobial phenotype
type: Class
subclass of: antimicrobial phenotype
user interface feature: order: ARO:3004303 # nonsensitive ARO:3004300 # intermediate ARO:3004302 # sensitive ARO:3004304 # sensitive - dose dependant ARO:3004301 # resistant
definition: Qualitative description of a microbial response to antimicrobial agents as described by CLSI using breakpoints that take into consideration tissue specificity of infection.
imported from: aro.owl

gradient plate method
type: Class
subclass of: in-vitro microbial susceptibility test
definition: A method to determine microbial susceptibility to antibiotics in which test bacteria is inoculated onto an agar plate that contains a concentration gradient of antibiotic. The minimum inhibitory concentration of antibiotic is assessed.
imported from: aro.owl

National Committee for Clinical Laboratory Standards (NCCLS)
type: Class
subclass of: antimicrobial resistance testing reference standard
definition: The National Committee for Clinical Laboratory Standards is an American organization responsible for developing accredited consensus clinical laboratory standards.
imported from: aro.owl

Swedish Reference Group for Antibiotics (SIR)
type: Class
subclass of: antimicrobial resistance testing reference standard
definition: SIR is a revised system for antibiotic sensitivity testing in Sweden that was proposed in 1977. The SIR system included two main changes: three sensitivity groups instead of the previous four and new breakpoints for the sensitivity groups.
imported from: aro.owl

Werkgroep Richtlijnen Gevoeligheidsbepalingen (WRG)
type: Class
subclass of: antimicrobial resistance testing reference standard
definition: The WRG is a standardized antimicrobial susceptibility testing methodology created by the Dutch Commissie Richtlijnen Gevoeligheidsbepalingen in 1981.
imported from: aro.owl
has exact synonym: Commissie Richtlijnen Gevoeligheidsbepalingen (CRG)
has exact synonym: Committee Guidelines Susceptibility Testing
has exact synonym: Working Group Guidelines Susceptibility Testing

BIOMIC Microbiology System
type: Class
subclass of: automated testing platform
definition: Specific automated system of analysis for determining antimicrobial susceptibility developed by Giles Scientific.
imported from: aro.owl

Maasai
type: Class
subclass of: Nilotic Eastern
definition: A Nilotic Eastern population with a population size of 0.9 millions
imported from: hancestro.owl

Samburu
type: Class
subclass of: Nilotic Eastern
definition: A Nilotic Eastern population with a population size of 0.1 millions
imported from: hancestro.owl

Tiv
type: Class
subclass of: Bantu Western
definition: A Bantu Western population with a population size of 3.8 millions
imported from: hancestro.owl

Nama
type: Class
subclass of: Khoisan South
definition: A Khoisan South population with a population size of 0.13 millions
imported from: hancestro.owl

Susu
type: Class
subclass of: Mande Western
definition: A Mande Western population with a population size of 2.2 millions
imported from: hancestro.owl

Taveta
type: Class
subclass of: Bantu Eastern
definition: A Bantu Eastern population with a population size of 0.026 millions
imported from: hancestro.owl

Bassa
type: Class
subclass of: Bantu Western
definition: A Bantu Western population with a population size of 0.8 million
imported from: hancestro.owl

Zulu
type: Class
subclass of: Nguni
definition: A Nguni population with a population size of 12 millions
imported from: hancestro.owl

Dinka
type: Class
subclass of: Nilotic Eastern
definition: A Nilotic Eastern population with a population size of 5 millions
imported from: hancestro.owl

Bambara
type: Class
subclass of: Mande Western
definition: A Mande Western population with a population size of 14 millions
imported from: hancestro.owl

Sebei
type: Class
subclass of: Kalenjin
definition: A Kalenjin population with a population size of 0.3 million
imported from: hancestro.owl

Masalit
type: Class
subclass of: Eastern African
subclass of: Nilotic Central
imported from: hancestro.owl

Bulu
type: Class
subclass of: Beti-Pahuin
imported from: hancestro.owl

Taita
type: Class
subclass of: Bantu Eastern
definition: A Bantu Eastern population with a population size of 0.34 millions
imported from: hancestro.owl

Igbo
type: Class
subclass of: Western African
definition: A Western African population with a population size of >34 millions
imported from: hancestro.owl

Kikuyu
type: Class
subclass of: Bantu Eastern
definition: A Bantu Eastern population with a population size of 5.3 millions
imported from: hancestro.owl

Terik
type: Class
subclass of: Kalenjin
imported from: hancestro.owl

Anuak
type: Class
subclass of: Luo
imported from: hancestro.owl

Nandi
type: Class
subclass of: Kalenjin
definition: A Kalenjin population with a population size of 937,884
imported from: hancestro.owl

Lunda
type: Class
subclass of: Bantu Central
imported from: hancestro.owl

Tsonga
type: Class
subclass of: Bantu Southern
definition: A Bantu Southern population with a population size of 6 millions
imported from: hancestro.owl

Fulani
type: Class
subclass of: Eastern African
subclass of: Central African
subclass of: Northern African
subclass of: Western African
definition: A Northern African, Central African, Western African, Eastern African population with a population size of 25 millions
imported from: hancestro.owl

Yoruba
type: Class
subclass of: Western African
definition: A Western African population with a population size of 45 millions
imported from: hancestro.owl

Zaghawa
type: Class
subclass of: Nilotic Central
subclass of: Northern African
subclass of: Nilotic Eastern
definition: A Nilotic Central, Nilotic Eastern, Northern African population with a population size of 0.4 million
imported from: hancestro.owl

Tugen
type: Class
subclass of: Kalenjin
definition: A Kalenjin population with a population size of 197556
imported from: hancestro.owl

Meru
type: Class
subclass of: Bantu Eastern
definition: A Bantu Eastern population with a population size of 2.7 Millions
imported from: hancestro.owl

Oromo
type: Class
subclass of: Cushitic Eastern
definition: A Cushitic Eastern population with a population size of 40 millions
imported from: hancestro.owl

Fur
type: Class
subclass of: Nilotic Eastern
definition: A Nilotic Eastern population with a population size of 1 million
imported from: hancestro.owl

Xhosa
type: Class
subclass of: Nguni
definition: A Nguni population with a population size of 7.9 millions
imported from: hancestro.owl

Minianka
type: Class
subclass of: Senufo
definition: A Senufo population with a population size of 0.74 million
imported from: hancestro.owl

Herero
type: Class
subclass of: Bantu Southern
imported from: hancestro.owl

Hausa
type: Class
subclass of: Eastern African
subclass of: Western African
definition: A Western African, Eastern African population with a population size of 90 millions
imported from: hancestro.owl

Nuer
type: Class
subclass of: Nilotic Eastern
definition: The Nuer are a Nilotic Eastern population with a population size of 3 million.
imported from: hancestro.owl

Mijikenda
type: Class
subclass of: Bantu Eastern
definition: A Bantu Eastern population with a population size of 2.488 Millions
imported from: hancestro.owl

Fang
type: Class
subclass of: Bantu Central
definition: A Bantu Central population with a population size of 1 million
imported from: hancestro.owl

Mossi
type: Class
subclass of: Gurma
definition: A Gurma population with a population size of 7.6 millions
imported from: hancestro.owl
has exact synonym: Moore
has exact synonym: Mooré
has exact synonym: More
has exact synonym: Moré
has exact synonym: Moshi
has exact synonym: Mòoré
has exact synonym: Mõõré

Bemba
type: Class
subclass of: Bantu Southern
definition: A Bantu Southern population with a population size of 5 millions
imported from: hancestro.owl

Kamba
type: Class
subclass of: Bantu Eastern
definition: A Bantu Eastern population with a population size of 4.663 millions
imported from: hancestro.owl

Rendille
type: Class
subclass of: Cushitic Eastern
imported from: hancestro.owl

Ga-Adangbe
type: Class
subclass of: Western African
definition: The Ga-Adangbe are a Western African population with a population size of 2 million.
imported from: hancestro.owl

Bulsa
type: Class
subclass of: Western African
imported from: hancestro.owl

Chewa
type: Class
subclass of: Bantu Eastern
definition: A Bantu Eastern population with a population size of 9 millions
imported from: hancestro.owl

Soninke
type: Class
subclass of: Mande Western
definition: The Soninke are a Mande Western population with a population size of 2 million.
imported from: hancestro.owl

Tswana
type: Class
subclass of: Bantu Southern
definition: A Bantu Southern population with a population size of 15 millions
imported from: hancestro.owl

Tuareg
type: Class
subclass of: Berber Western
subclass of: Berber Northern
definition: A Berber Northern, Berber Western population with a population size of 2.5 millions
imported from: hancestro.owl

Dagomba
type: Class
subclass of: Western African
definition: A Western African population with a population size of 0.93 millions
imported from: hancestro.owl

Kusasi
type: Class
subclass of: Gurunsi
imported from: hancestro.owl

Frafra
type: Class
subclass of: Gurunsi
definition: A Gurunsi population with a population size of 0.3 millions
imported from: hancestro.owl

Gurunsi
type: Class
subclass of: Gurma
definition: A Gurma population with a population size of 0.8 millions
imported from: hancestro.owl

Gurma
type: Class
subclass of: Western African
definition: A Western African population with a population size of 3.3 millions
imported from: hancestro.owl

Dagaaba
type: Class
subclass of: Western African
definition: The Dagaaba are a Western African population with a population size of 1 million.
imported from: hancestro.owl

Dyula
type: Class
subclass of: Mande Western
definition: A Mande Western population with a population size of 6.8 millions
imported from: hancestro.owl

Bihari Mauritian
type: Class
subclass of: Eastern African
definition: A Eastern African population with a population size of 1.2 millions
imported from: hancestro.owl

Mauritian Creole
type: Class
subclass of: Eastern African
imported from: hancestro.owl

Tamil
type: Class
subclass of: Eastern African
definition: A Eastern African population with a population size of 0.055 millions
imported from: hancestro.owl

Nankani
type: Class
subclass of: Frafra
imported from: hancestro.owl

Seychellois
type: Class
subclass of: Eastern African
imported from: hancestro.owl

Khoisan Eastern
type: Class
subclass of: Eastern African
definition: A Eastern African population with a population size of 0.4 million
imported from: hancestro.owl

Semitic Eastern
type: Class
subclass of: Eastern African
imported from: hancestro.owl

Semite Northern
type: Class
subclass of: Northern African
imported from: hancestro.owl

Semite Central
type: Class
subclass of: Central African
imported from: hancestro.owl

Pygmy Eastern
type: Class
subclass of: Eastern African
imported from: hancestro.owl

Eastern African
type: Class
subclass of: HANCESTRO_0011
definition: People living in: Burundi OR Comoros OR Djibouti OR Eritrea OR Ethiopia OR Kenya OR Madagascar OR Malawi OR Mauritius OR Mayotte OR Mozambique OR Rwanda OR Réunion OR Seychelles OR Somalia OR South Sudan OR Sudan OR Uganda OR United Republic of Tanzania OR Zimbabwe
imported from: hancestro.owl

Berber Western
type: Class
subclass of: Western African
imported from: hancestro.owl

Nubian Eastern
type: Class
subclass of: Nilotic Eastern
definition: 'The Nubians are known as people of the Nile and are located between Egypt and northern Sudan.' taken from: Culture and Customs of Sudan. Written by De Kwame Essien, Toyin Falola Ph.D.
imported from: hancestro.owl

Mattokki
type: Class
subclass of: Nubian Northern
definition: A Nubian Northern population with a population size of 0.050 million
imported from: hancestro.owl

Banda
type: Class
subclass of: Ubangi Central
definition: A Ubangi Central population with a population size of 1.5 millions
imported from: hancestro.owl

Mahas
type: Class
subclass of: Nubian Eastern
imported from: hancestro.owl

Luo
type: Class
subclass of: Nilotic Eastern
definition: A Nilotic Eastern population with a population size of Nilo-Saharan, Luo, River-Lake
imported from: hancestro.owl

Kalenjin
type: Class
subclass of: Nilotic Eastern
definition: The Kalenjin are a Nilotic Eastern population with a population size of 3 million.
imported from: hancestro.owl

Pygmy Southern
type: Class
subclass of: Southern African
imported from: hancestro.owl

Senufo
type: Class
subclass of: Western African
definition: The Senufo are a Western African population with a population size of 2 million.
imported from: hancestro.owl

Akan
type: Class
subclass of: Western African
definition: A Western African population with a population size of 20 millions
imported from: hancestro.owl

Daza
type: Class
subclass of: Toubou
definition: A Toubou population with a population size of Nilo-Saharan
imported from: hancestro.owl

Jola
type: Class
subclass of: Western African
definition: A Western African population with a population size of 0.5 millions
imported from: hancestro.owl

Songhai
type: Class
subclass of: Nilotic Western
definition: A Nilotic Western population with a population size of 5 millions
imported from: hancestro.owl

Banyarwanda
type: Class
subclass of: Bantu Eastern
definition: A Bantu Eastern population with a population size of 15.109 millions
imported from: hancestro.owl

Ari
type: Class
subclass of: Eastern African
definition: A Eastern African population with a population size of 0.462 million
imported from: hancestro.owl

Gaaliin
type: Class
subclass of: Eastern African
definition: A Eastern African population with a population size of 4 millions
imported from: hancestro.owl

Shaigiya
type: Class
subclass of: Sudanese Arab
imported from: hancestro.owl

Messiria
type: Class
subclass of: Baggara
imported from: hancestro.owl

Hadendoa
type: Class
subclass of: Beja
imported from: hancestro.owl

Halfawieen
type: Class
subclass of: Nubian Eastern
imported from: hancestro.owl

Nuba
type: Class
subclass of: Eastern African
definition: 'The Nuba trace their geographical roots to the area around the Nuba mountains, the uppermost regions around the Ingessana hills and communities close to the Red Sea.' taken from: Culture and Customs of Sudan. Written by De Kwame Essien, Toyin Falola Ph.D.
imported from: hancestro.owl

Sahrawi
type: Class
subclass of: Berber Northern
definition: A Berber Northern population with a population size of 0.57 million
imported from: hancestro.owl

Jarawa
type: Class
subclass of: Bantu Western
definition: A Bantu Western population with a population size of 0.250 million
imported from: hancestro.owl

Hadza
type: Class
subclass of: Eastern African
definition: A Eastern African population with a population size of 1300 persons
imported from: hancestro.owl

Serer
type: Class
subclass of: Western African
definition: A Western African population with a population size of 1.9 millions
imported from: hancestro.owl

Manjak
type: Class
subclass of: Western African
definition: A Western African population with a population size of 0.285 million
imported from: hancestro.owl

Balanta
type: Class
subclass of: Western African
definition: A Western African population with a population size of 0.324 million
imported from: hancestro.owl

Mozabite
type: Class
subclass of: Berber Northern
definition: A Berber Northern population with a population size of 0.150 million
imported from: hancestro.owl

Ngoni
type: Class
subclass of: Bantu Southern
subclass of: Bantu Eastern
definition: A Bantu Eastern, Bantu Southern population with a population size of 0.758 million
imported from: hancestro.owl

Lomwe
type: Class
subclass of: Bantu Southern
imported from: hancestro.owl

Yao
type: Class
subclass of: Bantu Eastern
definition: A Bantu Eastern population with a population size of > 2 millions
imported from: hancestro.owl

Mang'anja
type: Class
subclass of: Chewa
definition: A Chewa population with a population size of 2.486 millions, known as the people of the lake
imported from: hancestro.owl

Sena
type: Class
subclass of: Bantu Eastern
definition: The Sena are a Bantu Eastern population with a population size of 2 million.
imported from: hancestro.owl

Bongo
type: Class
subclass of: Sudanic
definition: A Sudanic population with a population size of Nilo-Saharan|Satellite-Core|Satellites|Central Sudanic|West|Bongo-Bagirmi|Bongo-Baka|Bongo|Kacipo-Balesi|Tennet|Luo|Lango-Acholi
imported from: hancestro.owl

Chipeta
type: Class
subclass of: Bantu Eastern
imported from: hancestro.owl

Nyakyusa
type: Class
subclass of: Bantu Eastern
definition: A Bantu Eastern population with a population size of 1.050 millions
imported from: hancestro.owl

Burunge
type: Class
subclass of: Cushitic Eastern
definition: A Cushitic Eastern population with a population size of 0.030 million
imported from: hancestro.owl

Antankarana
type: Class
subclass of: Malagasy
definition: A Malagasy population with a population size of 0.05 million
imported from: hancestro.owl

Tsimihety
type: Class
subclass of: Malagasy
definition: The Tsimihety are a Malagasy population with a population size of 1.2 million.
imported from: hancestro.owl

Sakalava
type: Class
subclass of: Malagasy
definition: The Sakalava are a Malagasy population with a population size of 1.2 million.
imported from: hancestro.owl

Betsimisaraka
type: Class
subclass of: Malagasy
definition: A Malagasy population with a population size of 1.5 millions
imported from: hancestro.owl

Antemoro
type: Class
subclass of: Malagasy
definition: A Malagasy population with a population size of 0.5 million
imported from: hancestro.owl

Betsileo
type: Class
subclass of: Malagasy
definition: A Malagasy population with a population size of 4.359 millions
imported from: hancestro.owl

Zafimaniry
type: Class
subclass of: Betsileo
definition: A Betsileo population with a population size of 0.015 million
imported from: hancestro.owl

Merina
type: Class
subclass of: Malagasy
definition: A Malagasy population with a population size of > 5 millions
imported from: hancestro.owl

Bara
type: Class
subclass of: Malagasy
definition: A Malagasy population with a population size of 0.52 million
imported from: hancestro.owl

Vezo
type: Class
subclass of: Malagasy
definition: A Malagasy population with a population size of 0.0012 million
imported from: hancestro.owl

Antandroy
type: Class
subclass of: Malagasy
definition: A Malagasy population with a population size of 0.6 million
imported from: hancestro.owl

Mahafaly
type: Class
subclass of: Malagasy
definition: A Malagasy population with a population size of 0.15 million
imported from: hancestro.owl

Cafre
type: Class
subclass of: Eastern African
imported from: hancestro.owl

Malbar
type: Class
subclass of: Eastern African
definition: A Eastern African population with a population size of 0.18 million
imported from: hancestro.owl

Zarabe
type: Class
subclass of: Eastern African
imported from: hancestro.owl

Zoreille
type: Class
subclass of: Eastern African
definition: French people who were born in Metropolitan France.
imported from: hancestro.owl

Sinwa
type: Class
subclass of: Eastern African
definition: A Eastern African population with a population size of 0.025 million
imported from: hancestro.owl

!Kung
type: Class
subclass of: San
imported from: hancestro.owl

Ubangi Central
type: Class
subclass of: Central African
imported from: hancestro.owl

Nilotic Central
type: Class
subclass of: Central African
imported from: hancestro.owl

Bangba
type: Class
subclass of: Ubangi Central
definition: A Ubangi Central population with a population size of 0.011 million
imported from: hancestro.owl

Mayogo
type: Class
subclass of: Ubangi Central
imported from: hancestro.owl

Cushitic Eastern
type: Class
subclass of: Eastern African
imported from: hancestro.owl

Nilotic Western
type: Class
subclass of: Western African
imported from: hancestro.owl

Sudanic
type: Class
subclass of: Eastern African
imported from: hancestro.owl

Bantu Central
type: Class
subclass of: Central African
imported from: hancestro.owl

Central African
type: Class
subclass of: HANCESTRO_0011
definition: People living in: Angola OR Cameroon OR Central African Republic OR Chad OR Congo OR Democratic Republic of the Congo OR Gabon OR Zambia
imported from: hancestro.owl

Northern African
type: Class
subclass of: HANCESTRO_0010
definition: People living in: Algeria OR Egypt OR Libya OR Mauritania OR Morocco OR Tunisia OR Western Sahara
imported from: hancestro.owl

Southern African
type: Class
subclass of: HANCESTRO_0011
definition: People living in: Botswana OR Eswatini OR Lesotho OR Namibia OR South Africa
imported from: hancestro.owl

Western African
type: Class
subclass of: HANCESTRO_0011
definition: People living in: Benin OR Burkina Faso OR Cabo Verde OR Cote d'Ivoire OR Equatorial Guinea OR Gambia OR Ghana OR Guinea OR Guinea-Bissau OR Liberia OR Mali OR Niger OR Nigeria OR Saint Helena OR Sao Tome and Principe OR Senegal OR Sierra Leone OR Togo
imported from: hancestro.owl

Kanuri
type: Class
subclass of: Nilotic Central
subclass of: Nilotic Western
definition: A Nilotic Central, Nilotic Western population with a population size of >10 millions
imported from: hancestro.owl

Kotoko
type: Class
subclass of: Central African
definition: A Central African population with a population size of < 1 million
imported from: hancestro.owl

Masa
type: Class
subclass of: Central African
definition: A Central African population with a population size of 0.45 millions
imported from: hancestro.owl

Pygmy Central
type: Class
subclass of: Central African
imported from: hancestro.owl

Aka
type: Class
subclass of: Pygmy Central
imported from: hancestro.owl

Baka_Cameroon
type: Class
subclass of: Pygmy Central
definition: A Pygmy Central population with a population size of 0.03 milion
imported from: hancestro.owl

Mbuti
type: Class
subclass of: Pygmy Central
definition: A Pygmy Central population with a population size of 0.01 milion
imported from: hancestro.owl

Efé
type: Class
subclass of: Pygmy Central
definition: A Pygmy Central population with a population size of 0.07 million
imported from: hancestro.owl

Sua
type: Class
subclass of: Western African
subclass of: Pygmy Central
imported from: hancestro.owl

Twa
type: Class
subclass of: Pygmy Eastern
subclass of: Pygmy Southern
subclass of: Banyarwanda
subclass of: Pygmy Central
definition: A Pygmy Eastern, Pygmy Southern, Banyarwanda, Pygmy Central population with a population size of 0.04 million
imported from: hancestro.owl

Kwatay
type: Class
subclass of: Western African
imported from: hancestro.owl

Kanembu
type: Class
subclass of: Kanuri
definition: A Kanuri population with a population size of 0.655 millions
imported from: hancestro.owl

Beti-Pahuin
type: Class
subclass of: Bantu Central
subclass of: Bantu Western
definition: A Bantu Western, Bantu Central population with a population size of 3.3 millions with a group of 20 sub-ethnicities
imported from: hancestro.owl

Chokwe
type: Class
subclass of: Bantu Central
definition: A Bantu Central population with a population size of 1.1 million
imported from: hancestro.owl

Kongo
type: Class
subclass of: Bantu Central
definition: A Bantu Central population with a population size of 17 millions
imported from: hancestro.owl

Luba
type: Class
subclass of: Bantu Central
definition: The Luba are a Bantu Central population with a population size of >15 million.
imported from: hancestro.owl

Mbundu
type: Class
subclass of: Bantu Central
definition: A Bantu Central population with a population size of 6.4 millions
imported from: hancestro.owl

Moghamo
type: Class
subclass of: Bantu Central
definition: A Bantu Central population with a population size of 0.018 million
imported from: hancestro.owl

Mongo
type: Class
subclass of: Bantu Central
definition: The Mongo are a Bantu Central population with a population size of >15 million.
imported from: hancestro.owl

Ngala
type: Class
subclass of: Bantu Central
definition: A Bantu Central population with a population size of 25 millions
imported from: hancestro.owl

Ngamambo
type: Class
subclass of: Bantu Central
definition: A Bantu Central population with a population size of 0.08 million
imported from: hancestro.owl

Tikar
type: Class
subclass of: Bantu Central
definition: A Bantu Central population with a population size of 0.025 million
imported from: hancestro.owl

Ovimbundu
type: Class
subclass of: Bantu Central
definition: A Bantu Central population with a population size of 4.6 milions
imported from: hancestro.owl

Mbunda
type: Class
subclass of: Kongo
definition: A Kongo population with a population size of 0.5 million
imported from: hancestro.owl

Gbaya
type: Class
subclass of: Ubangi Central
definition: A Ubangi Central population with a population size of 1.5 million
imported from: hancestro.owl

Ngbandi
type: Class
subclass of: Ubangi Central
definition: A Ubangi Central population with a population size of 0.122 million
imported from: hancestro.owl

Zande
type: Class
subclass of: Eastern African
subclass of: Ubangi Central
definition: A Ubangi Central, Eastern African population with a population size of 1-4 millions
imported from: hancestro.owl

Baggara
type: Class
subclass of: Semitic Eastern
subclass of: Semite Central
definition: A Semite Central, Semitic Eastern population with a population size of 6 million
imported from: hancestro.owl

Sara
type: Class
subclass of: Nilotic Central
subclass of: Western African
definition: A Western African, Nilotic Central population with a population size of 3.5 millions
imported from: hancestro.owl

Toubou
type: Class
subclass of: Nilotic Central
subclass of: Nilotic Western
subclass of: Northern African
subclass of: Nilotic Eastern
definition: A Nilotic Eastern, Nilotic Western, Northern African, Nilotic Central population with a population size of 2.25 millions
imported from: hancestro.owl
has exact synonym: Tabu
has exact synonym: Tebou
has exact synonym: Tebu
has exact synonym: Tibbu
has exact synonym: Tibu
has exact synonym: Toda
has exact synonym: Todaga
has exact synonym: Todga
has exact synonym: Tubu
has exact synonym: Tuda
has exact synonym: Tudaga
has exact synonym: Umbararo

Afrikaner
type: Class
subclass of: Southern African
definition: A Southern African population with a population size of 2.8–3.5 million
imported from: hancestro.owl

Bantu Southern
type: Class
subclass of: Southern African
imported from: hancestro.owl

British diaspora
type: Class
subclass of: Eastern African
subclass of: Southern African
definition: A Southern African, Eastern African population with a population size of 2.5 millions
imported from: hancestro.owl

Coloured
type: Class
subclass of: Southern African
definition: A Southern African population with a population size of 4.7 millions
imported from: hancestro.owl

Goffel
type: Class
subclass of: Southern African
definition: A Southern African population with a population size of 0.03 millions. People of mixed race claiming both European and African descent.
imported from: hancestro.owl

French diaspora
type: Class
subclass of: Eastern African
subclass of: Southern African
imported from: hancestro.owl

Khoekhoe
type: Class
subclass of: Southern African
imported from: hancestro.owl

San
type: Class
subclass of: Southern African
definition: A Southern African population with a population size of 0.1 million
imported from: hancestro.owl

Khoisan South
type: Class
subclass of: Khoekhoe
subclass of: San
definition: A Khoekhoe, San population with a population size of 0.4 millions
imported from: hancestro.owl

Taa
type: Class
subclass of: San
imported from: hancestro.owl

Banareng
type: Class
subclass of: Bantu Southern
definition: People of the place of the buffalo
imported from: hancestro.owl

Himba
type: Class
subclass of: Bantu Southern
definition: The Himba are a Bantu Southern population with a population size of 0.05 million.
imported from: hancestro.owl

Kwangali
type: Class
subclass of: Bantu Southern
imported from: hancestro.owl

Lemba
type: Class
subclass of: Bantu Southern
definition: The Lemba are a Bantu Southern population with a population size of 0.05 million
imported from: hancestro.owl

Makua
type: Class
subclass of: Bantu Southern
definition: A Bantu Southern population with a population size of 4.037 Millions
imported from: hancestro.owl

Nguni
type: Class
subclass of: Bantu Southern
definition: A Bantu Southern population with a population size of > 28 millions
imported from: hancestro.owl

Ovambo
type: Class
subclass of: Bantu Southern
definition: A Bantu Southern population with a population size of 1.6 million
imported from: hancestro.owl

Shona
type: Class
subclass of: Bantu Southern
subclass of: Bantu Eastern
definition: A Bantu Southern, Bantu Eastern population with a population size of 10.6 millions
imported from: hancestro.owl

Sotho
type: Class
subclass of: Bantu Southern
definition: A Bantu Southern population with a population size of 7.130 millions
imported from: hancestro.owl

Tonga
type: Class
subclass of: Bantu Southern
subclass of: Bantu Eastern
definition: A Bantu Southern, Bantu Eastern population with a population size of 2 millions
imported from: hancestro.owl

Venda
type: Class
subclass of: Bantu Southern
definition: A Bantu Southern population with a population size of 1 million
imported from: hancestro.owl

Yeyi
type: Class
subclass of: Bantu Southern
definition: A Bantu Southern population with a population size of 0.3 million
imported from: hancestro.owl

Pedi
type: Class
subclass of: Sotho
definition: A Sotho population with a population size of 4.7 millions
imported from: hancestro.owl

Kalanga
type: Class
subclass of: Shona
definition: A Shona population with a population size of 0.75 million
imported from: hancestro.owl

Nambya
type: Class
subclass of: Shona
definition: A Shona population with a population size of 0.1 million
imported from: hancestro.owl

Ndebele
type: Class
subclass of: Nguni
imported from: hancestro.owl

Swazi
type: Class
subclass of: Nguni
definition: A Nguni population with a population size of 2.3 millions
imported from: hancestro.owl

North Ndebele
type: Class
subclass of: Ndebele
definition: A Ndebele population with a population size of 1.5 million
imported from: hancestro.owl

South Ndebele
type: Class
subclass of: Ndebele
definition: A Ndebele population with a population size of 0.7 million
imported from: hancestro.owl

Kgatla
type: Class
subclass of: Tswana
imported from: hancestro.owl

Andalusian
type: Class
subclass of: Northern African
definition: Descendants of Andalusians people
imported from: hancestro.owl

Berber Northern
type: Class
subclass of: Northern African
definition: A Northern African population with a population size of 38 millions
imported from: hancestro.owl

Copt
type: Class
subclass of: Eastern African
subclass of: Northern African
definition: A Eastern African, Northern African population with a population size of 20 millions
imported from: hancestro.owl

Nubian Northern
type: Class
subclass of: Northern African
definition: A Northern African population with a population size of 1.7 million
imported from: hancestro.owl

Algerian Berber
type: Class
subclass of: Berber Northern
imported from: hancestro.owl

Lybian Berber
type: Class
subclass of: Berber Northern
imported from: hancestro.owl

Moroccan Berber
type: Class
subclass of: Berber Northern
imported from: hancestro.owl

Shilha
type: Class
subclass of: Berber Northern
definition: A Berber Northern population with a population size of Afro-Asiatic|Berber|Northern|Atlas
imported from: hancestro.owl

Tunisian Andalusian
type: Class
subclass of: Andalusian
imported from: hancestro.owl

Tunisian Berber
type: Class
subclass of: Berber Northern
imported from: hancestro.owl

Egyptian
type: Class
subclass of: Semite Northern
definition: A Semite Northern population with a population size of 85 millions
imported from: hancestro.owl

Haratin
type: Class
subclass of: Semite Northern
definition: A Semite Northern population with a population size of 2 millions
imported from: hancestro.owl

Maghrebi
type: Class
subclass of: Semite Northern
definition: A Semite Northern population with a population size of >72 millions
imported from: hancestro.owl

Gumuz
type: Class
subclass of: Nilotic Eastern
definition: A Nilotic Eastern population with a population size of 0.2 million
imported from: hancestro.owl

Moor
type: Class
subclass of: Semitic Eastern
subclass of: Semite Northern
definition: A Semite Northern, Semitic Eastern population with a population size of 2 millions
imported from: hancestro.owl

Bantu Eastern
type: Class
subclass of: Eastern African
imported from: hancestro.owl

Malagasy
type: Class
subclass of: Eastern African
definition: A Eastern African population with a population size of 25 millions
imported from: hancestro.owl

Nilotic Eastern
type: Class
subclass of: Eastern African
definition: A Eastern African population with a population size of >22 millions
imported from: hancestro.owl

Wolaita
type: Class
subclass of: Eastern African
definition: A Eastern African population with a population size of 2 millions
imported from: hancestro.owl

Bari
type: Class
subclass of: Nilotic Eastern
definition: A Nilotic Eastern population with a population size of 0.475 millon
imported from: hancestro.owl

Acholi
type: Class
subclass of: Luo
definition: A Luo population with a population size of 2 Millions
imported from: hancestro.owl

Kwama
type: Class
subclass of: Nilotic Eastern
imported from: hancestro.owl

Turkana
type: Class
subclass of: Nilotic Eastern
definition: A Nilotic Eastern population with a population size of 1,016 millions
imported from: hancestro.owl

Alur
type: Class
subclass of: Luo
definition: A Luo population with a population size of 1.7 million
imported from: hancestro.owl

Lango
type: Class
subclass of: Luo
definition: A Luo population with a population size of 2.2 millions
imported from: hancestro.owl

Shilluk
type: Class
subclass of: Luo
definition: A Luo population with a population size of 1.5 million
imported from: hancestro.owl

Birged
type: Class
subclass of: Nubian Eastern
definition: 'The Birked live north and east of Dago and Bayko, between Gebel Harayz and Rizaykat and are much larger tribe then either.' from a: A History of the Arabs in the Sudan. Written by De H. A. MacMichael.
imported from: hancestro.owl

Dongolese
type: Class
subclass of: Nubian Eastern
imported from: hancestro.owl

Hill Nubian
type: Class
subclass of: Nubian Eastern
definition: A Nubian Eastern population with a population size of 0.063 million
imported from: hancestro.owl

Afar
type: Class
subclass of: Cushitic Eastern
definition: A Cushitic Eastern population with a population size of 6.3 million
imported from: hancestro.owl

Agaw
type: Class
subclass of: Cushitic Eastern
definition: A Cushitic Eastern population with a population size of 1 million
imported from: hancestro.owl

Beja
type: Class
subclass of: Cushitic Eastern
definition: A Cushitic Eastern population with a population size of 2.8 millions
imported from: hancestro.owl

Bilen
type: Class
subclass of: Cushitic Eastern
definition: The Bilen are a Cushitic Eastern population with a population size of 0.2 million.
imported from: hancestro.owl

Saho
type: Class
subclass of: Cushitic Eastern
definition: The Saho are a Cushitic Eastern population with a population size of 0.2 million.
imported from: hancestro.owl

Sidama
type: Class
subclass of: Cushitic Eastern
definition: A Cushitic Eastern population with a population size of >3 millions
imported from: hancestro.owl

Somali
type: Class
subclass of: Cushitic Eastern
definition: A Cushitic Eastern population with a population size of >20 millions
imported from: hancestro.owl

Lugbara
type: Class
subclass of: Sudanic
definition: A Sudanic population with a population size of 11 millions
imported from: hancestro.owl

Amhara
type: Class
subclass of: Semitic Eastern
definition: A Semitic Eastern population with a population size of 24 millions
imported from: hancestro.owl

Gurage
type: Class
subclass of: Semitic Eastern
definition: A Semitic Eastern population with a population size of 1.9 millions. Subdivided into three groups: East, North, West.
imported from: hancestro.owl

Habesha
type: Class
subclass of: Semitic Eastern
imported from: hancestro.owl

Rashaida
type: Class
subclass of: Semitic Eastern
definition: A Semitic Eastern population with a population size of 0.2 millions
imported from: hancestro.owl

Sudanese Arab
type: Class
subclass of: Semitic Eastern
definition: A Semitic Eastern population with a population size of 28 millions
imported from: hancestro.owl

Tigrinya
type: Class
subclass of: Semitic Eastern
definition: A Semitic Eastern population with a population size of 10.3 millions
imported from: hancestro.owl

Tigré
type: Class
subclass of: Semitic Eastern
definition: A Semitic Eastern population with a population size of 1.5 millions
imported from: hancestro.owl

Baka_South_Sudan
type: Class
subclass of: Pygmy Eastern
definition: A Pygmy Eastern population with a population size of 0.25 million
imported from: hancestro.owl

Sandawe
type: Class
subclass of: Khoisan Eastern
definition: A Khoisan Eastern population with a population size of 0.06 million
imported from: hancestro.owl

Basoga
type: Class
subclass of: Bantu Eastern
definition: A Bantu Eastern population with a population size of 2.9
imported from: hancestro.owl

Chaga
type: Class
subclass of: Bantu Eastern
definition: The Chaga are a Bantu Eastern population with a population size of 2 million.
imported from: hancestro.owl

Embu
type: Class
subclass of: Bantu Eastern
definition: A Bantu Eastern population with a population size of >0.4 million
imported from: hancestro.owl

Ganda
type: Class
subclass of: Bantu Eastern
definition: A Bantu Eastern population with a population size of 6.7 millions
imported from: hancestro.owl

Kisii
type: Class
subclass of: Bantu Eastern
definition: A Bantu Eastern population with a population size of 2.2 millions
imported from: hancestro.owl

Luhya
type: Class
subclass of: Bantu Eastern
definition: A Bantu Eastern population with a population size of 5.4 millions
imported from: hancestro.owl

Makonde
type: Class
subclass of: Bantu Eastern
definition: A Bantu Eastern population with a population size of 1.3 millions
imported from: hancestro.owl

Nyoro
type: Class
subclass of: Bantu Eastern
definition: A Bantu Eastern population with a population size of 1.4 million
imported from: hancestro.owl

Swahili
type: Class
subclass of: Bantu Eastern
definition: A Bantu Eastern population with a population size of >0.1 millons
imported from: hancestro.owl

Tumbuka
type: Class
subclass of: Bantu Eastern
definition: A Bantu Eastern population with a population size of 1.546 millions
imported from: hancestro.owl

Adele
type: Class
subclass of: Western African
definition: A Western African population with a population size of 0.05 million
imported from: hancestro.owl

Aku
type: Class
subclass of: Western African
definition: A Western African population with a population size of 0.01 million
imported from: hancestro.owl

Bantu Western
type: Class
subclass of: Western African
imported from: hancestro.owl

Biafada
type: Class
subclass of: Western African
definition: A Western African population with a population size of 0.04
imported from: hancestro.owl

Bubi
type: Class
subclass of: Western African
definition: A Western African population with a population size of 0.1 million
imported from: hancestro.owl
comment: The Bubi are an amalgamation of first nation clans with various ancient mainland origins that later integrated with Krio, Efik, Igbo, Emancipado and Fernandino settlers.

Buduma
type: Class
subclass of: Western African
definition: A Western African population with a population size of 0.128 millions
imported from: hancestro.owl

Dogon
type: Class
subclass of: Western African
definition: A Western African population with a population size of 1.591 millions
imported from: hancestro.owl

Edo
type: Class
subclass of: Western African
definition: A Western African population with a population size of 1.6 millions
imported from: hancestro.owl

Efik
type: Class
subclass of: Western African
definition: A Western African population with a population size of 0.9 millions
imported from: hancestro.owl

Eket
type: Class
subclass of: Western African
definition: A Western African population with a population size of 0.3 millions
imported from: hancestro.owl
has exact synonym: Ekid

Esan
type: Class
subclass of: Western African
definition: A Western African population with a population size of 1.5 millions
imported from: hancestro.owl

Ewe
type: Class
subclass of: Western African
definition: A Western African population with a population size of 6 millions
imported from: hancestro.owl

Fon
type: Class
subclass of: Western African
definition: The Fon are a Western African population with a population size of 4 million.
imported from: hancestro.owl

Ibibio
type: Class
subclass of: Western African
definition: A Western African population with a population size of 9.6 millions
imported from: hancestro.owl

Ijaw
type: Class
subclass of: Western African
definition: A Western African population with a population size of >14 millions
imported from: hancestro.owl

Mande Western
type: Class
subclass of: Western African
definition: A Western African population with a population size of >30 millions
imported from: hancestro.owl

Mole-Dagbani
type: Class
subclass of: Gurma
definition: A Gurma population with a population size of 8.6 millions
imported from: hancestro.owl

Urhobo
type: Class
subclass of: Western African
definition: The Urhobo are a Western African population with a population size of 2 million.
imported from: hancestro.owl

Wolof
type: Class
subclass of: Western African
definition: The Wolof are a Western African population with a population size of 4 million.
imported from: hancestro.owl

Bissa
type: Class
subclass of: Mande Western
definition: A Mande Western population with a population size of 1.7 millions
imported from: hancestro.owl

Mandinka
type: Class
subclass of: Mande Western
definition: A Mande Western population with a population size of 13 millions
imported from: hancestro.owl

Marka
type: Class
subclass of: Mande Western
definition: A Mande Western population with a population size of 0.4 millions
imported from: hancestro.owl

Mende
type: Class
subclass of: Mande Western
definition: The Mende are a Mande Western population with a population size of 2 million.
imported from: hancestro.owl

Kassena
type: Class
subclass of: Gurunsi
definition: A Gurunsi population with a population size of 0.161 millions
imported from: hancestro.owl

Zarma
type: Class
subclass of: Songhai
definition: A Songhai population with a population size of >5 millions
imported from: hancestro.owl

Dendi
type: Class
subclass of: Songhai
definition: A Songhai population with a population size of 0.2 million
imported from: hancestro.owl

Okiek
type: Class
subclass of: Kalenjin
imported from: hancestro.owl

Hutu
type: Class
subclass of: Banyarwanda
definition: A Banyarwanda population with a population size of 16 millions
imported from: hancestro.owl

Tutsi
type: Class
subclass of: Banyarwanda
subclass of: Southern African
definition: A Banyarwanda, Southern African population with a population size of 3 millions
imported from: hancestro.owl

Bamileke
type: Class
subclass of: Central African
imported from: hancestro.owl

Isoko
type: Class
subclass of: Western African
imported from: hancestro.owl

Kru
type: Class
subclass of: Western African
subclass of: Pygmy Central
definition: A Pygmy Central, Western African population with a population size of 6.8 millions
imported from: hancestro.owl

Duala
type: Class
subclass of: Bantu Central
definition: A Bantu Central population with a population size of 260000
imported from: hancestro.owl

Eshira
type: Class
subclass of: Bantu Central
definition: A Bantu Central population with a population size of 74000
imported from: hancestro.owl

Hema
type: Class
subclass of: Bantu Central
definition: A Bantu Central population with a population size of 215000
imported from: hancestro.owl

Kota
type: Class
subclass of: Bantu Central
definition: A Bantu Central population with a population size of 81500
imported from: hancestro.owl

Makaa
type: Class
subclass of: Bantu Central
definition: A Bantu Central population with a population size of 89500
imported from: hancestro.owl

Myene
type: Class
subclass of: Bantu Central
definition: A Bantu Central population with a population size of 117030
imported from: hancestro.owl

Nande
type: Class
subclass of: Bantu Central
definition: A Bantu Central population with a population size of 2.355 millions
imported from: hancestro.owl

Ngumba
type: Class
subclass of: Bantu Central
imported from: hancestro.owl

Obamba
type: Class
subclass of: Bantu Central
imported from: hancestro.owl

Pende
type: Class
subclass of: Bantu Central
definition: A Bantu Central population with a population size of 250000
imported from: hancestro.owl

Punu
type: Class
subclass of: Bantu Central
definition: A Bantu Central population with a population size of 317000
imported from: hancestro.owl

Teke
type: Class
subclass of: Bantu Central
imported from: hancestro.owl

Vili
type: Class
subclass of: Bantu Central
definition: A Bantu Central population with a population size of 100000
imported from: hancestro.owl

Mandar
type: Class
subclass of: Central African
definition: A Central African population with a population size of 90500
imported from: hancestro.owl

Mangbetu
type: Class
subclass of: Central African
definition: A Central African population with a population size of 1.8 millions
imported from: hancestro.owl

Manja
type: Class
subclass of: Central African
definition: A Central African population with a population size of 346000
imported from: hancestro.owl

Marba
type: Class
subclass of: Central African
definition: A Central African population with a population size of 228000
imported from: hancestro.owl

Mbum
type: Class
subclass of: Central African
definition: A Central African population with a population size of 165000
imported from: hancestro.owl

Nzebi
type: Class
subclass of: Central African
definition: A Central African population with a population size of 347614
imported from: hancestro.owl

Podoko
type: Class
subclass of: Central African
definition: A Central African population with a population size of 65000
imported from: hancestro.owl

Gyele
type: Class
subclass of: Pygmy Central
definition: A Pygmy Central population with a population size of 5500
imported from: hancestro.owl

Yaka
type: Class
subclass of: Pygmy Central
imported from: hancestro.owl

Tupuri
type: Class
subclass of: Central African
imported from: hancestro.owl

Wuzlam
type: Class
subclass of: Central African
imported from: hancestro.owl

Yakoma
type: Class
subclass of: Central African
definition: A Central African population with a population size of 177000
imported from: hancestro.owl

Chopi
type: Class
subclass of: Bantu Eastern
definition: A Bantu Eastern population with a population size of 760000
imported from: hancestro.owl

Mbeere
type: Class
subclass of: Embu
definition: A Embu population with a population size of 195250
imported from: hancestro.owl

Kiga
type: Class
subclass of: Bantu Eastern
definition: A Bantu Eastern population with a population size of 3,420 Millions
imported from: hancestro.owl

Lambya
type: Class
subclass of: Bantu Eastern
definition: A Bantu Eastern population with a population size of 89900
imported from: hancestro.owl

Masaba
type: Class
subclass of: Bantu Eastern
definition: A Bantu Eastern population with a population size of 2.233 millions
imported from: hancestro.owl

Segeju
type: Class
subclass of: Mijikenda
definition: A Mijikenda population with a population size of <25,000
imported from: hancestro.owl

Nkole
type: Class
subclass of: Bantu Eastern
definition: A Bantu Eastern population with a population size of 4,436 Millions
imported from: hancestro.owl

Nyamwezi
type: Class
subclass of: Bantu Eastern
definition: A Bantu Eastern population with a population size of 4 Millions
imported from: hancestro.owl

Pokomo
type: Class
subclass of: Bantu Eastern
definition: A Bantu Eastern population with a population size of 112075
imported from: hancestro.owl

Ndau
type: Class
subclass of: Shona
imported from: hancestro.owl

Sukuma
type: Class
subclass of: Bantu Eastern
definition: A Bantu Eastern population with a population size of 10 Millions
imported from: hancestro.owl

Tharaka
type: Class
subclass of: Bantu Eastern
definition: A Bantu Eastern population with a population size of 175905
imported from: hancestro.owl

Aweer
type: Class
subclass of: Cushitic Eastern
definition: A Cushitic Eastern population with a population size of 20103
imported from: hancestro.owl

Elmolo
type: Class
subclass of: Cushitic Eastern
definition: A Cushitic Eastern population with a population size of 1104
imported from: hancestro.owl

Hadiya
type: Class
subclass of: Cushitic Eastern
definition: A Cushitic Eastern population with a population size of 2 million
imported from: hancestro.owl

Borana
type: Class
subclass of: Oromo
definition: A Oromo population with a population size of 1025000
imported from: hancestro.owl

Gabra
type: Class
subclass of: Oromo
definition: A Oromo population with a population size of 700000
imported from: hancestro.owl

Antambahoaka
type: Class
subclass of: Malagasy
definition: A Malagasy population with a population size of 50000
imported from: hancestro.owl

Antanosy
type: Class
subclass of: Malagasy
definition: A Malagasy population with a population size of 772000
imported from: hancestro.owl

Bezanozano
type: Class
subclass of: Malagasy
definition: A Malagasy population with a population size of 100000
imported from: hancestro.owl

Mikea
type: Class
subclass of: Malagasy
definition: A Malagasy population with a population size of 1500
imported from: hancestro.owl

Sihanaka
type: Class
subclass of: Malagasy
definition: A Malagasy population with a population size of 200000
imported from: hancestro.owl

Tanala
type: Class
subclass of: Malagasy
definition: A Malagasy population with a population size of 400000
imported from: hancestro.owl

Marakwet
type: Class
subclass of: Kalenjin
definition: A Kalenjin population with a population size of 180000
imported from: hancestro.owl

Pokot
type: Class
subclass of: Kalenjin
definition: A Kalenjin population with a population size of 969000
imported from: hancestro.owl

Kunama
type: Class
subclass of: Nilotic Eastern
definition: A Nilotic Eastern population with a population size of 260000
imported from: hancestro.owl

Nara
type: Class
subclass of: Nilotic Eastern
definition: A Nilotic Eastern population with a population size of 108000
imported from: hancestro.owl

Teso
type: Class
subclass of: Nilotic Eastern
definition: A Nilotic Eastern population with a population size of 2,873 Millions
imported from: hancestro.owl

Jeberti
type: Class
subclass of: Semitic Eastern
imported from: hancestro.owl

Aushi
type: Class
subclass of: Bemba
definition: A Bemba population with a population size of 433000
imported from: hancestro.owl

Okavango
type: Class
subclass of: Bantu Southern
imported from: hancestro.owl

Lozi
type: Class
subclass of: Sotho
definition: A Sotho population with a population size of 3,575 Millions
imported from: hancestro.owl

Damara
type: Class
subclass of: Khoisan South
definition: A Khoisan South population with a population size of 146000
imported from: hancestro.owl

Aghem
type: Class
subclass of: Western African
definition: A Western African population with a population size of 61500
imported from: hancestro.owl

Aja
type: Class
subclass of: Western African
definition: A Western African population with a population size of 810000
imported from: hancestro.owl

Fante
type: Class
subclass of: Akan
definition: A Akan population with a population size of 2 millions
imported from: hancestro.owl

Anaang
type: Class
subclass of: Western African
definition: A Western African population with a population size of 2.6 million
imported from: hancestro.owl

Baule
type: Class
subclass of: Akan
definition: A Akan population with a population size of 5 millions
imported from: hancestro.owl

Bamum
type: Class
subclass of: Western African
definition: A Western African population with a population size of 659000
imported from: hancestro.owl

Kombe
type: Class
subclass of: Bantu Western
imported from: hancestro.owl

Luvale
type: Class
subclass of: Bantu Central
imported from: hancestro.owl

Bedik
type: Class
subclass of: Western African
definition: A Western African population with a population size of 2500
imported from: hancestro.owl

Bassari
type: Class
subclass of: Western African
definition: A Western African population with a population size of 40800
imported from: hancestro.owl

Diffa Arabs
type: Class
subclass of: Western African
definition: A Western African population with a population size of 150000
imported from: hancestro.owl

Ditammari
type: Class
subclass of: Western African
imported from: hancestro.owl

Ekoi
type: Class
subclass of: Western African
imported from: hancestro.owl

Gola
type: Class
subclass of: Western African
definition: A Western African population with a population size of 304000
imported from: hancestro.owl

Guan
type: Class
subclass of: Western African
definition: The Guan are a Western African population with a population size of 1 million.
imported from: hancestro.owl

Bariba
type: Class
subclass of: Gurma
definition: A Gurma population with a population size of 1.4 million
imported from: hancestro.owl

Konkomba
type: Class
subclass of: Gurma
definition: A Gurma population with a population size of 950000
imported from: hancestro.owl

Lilse
type: Class
subclass of: Gurma
imported from: hancestro.owl

Lobi
type: Class
subclass of: Gurma
imported from: hancestro.owl

Pana
type: Class
subclass of: Gurma
definition: A Gurma population with a population size of 19700
imported from: hancestro.owl

Samoya
type: Class
subclass of: Gurma
definition: A Gurma population with a population size of 30900
imported from: hancestro.owl

Itsekiri
type: Class
subclass of: Western African
definition: A Western African population with a population size of 2.7 Million
imported from: hancestro.owl

Bandial
type: Class
subclass of: Jola
definition: A Jola population with a population size of 10125
imported from: hancestro.owl

Dan
type: Class
subclass of: Mande Western
definition: A Mande Western population with a population size of 700000
imported from: hancestro.owl

Kabye
type: Class
subclass of: Gurma
definition: A Gurma population with a population size of 1.22 millions
imported from: hancestro.owl

Krio
type: Class
subclass of: Western African
definition: A Western African population with a population size of 104311
imported from: hancestro.owl

Krahn
type: Class
subclass of: Kru
definition: A Kru population with a population size of 214000
imported from: hancestro.owl

Grebo
type: Class
subclass of: Kru
definition: A Kru population with a population size of 387000
imported from: hancestro.owl

Kulango
type: Class
subclass of: Western African
definition: A Western African population with a population size of 311500
imported from: hancestro.owl

Limba
type: Class
subclass of: Western African
definition: A Western African population with a population size of 792190
imported from: hancestro.owl

Jakhanke
type: Class
subclass of: Mande Western
definition: A Mande Western population with a population size of 115200
imported from: hancestro.owl

Kono
type: Class
subclass of: Mande Western
definition: A Mande Western population with a population size of 363000
imported from: hancestro.owl

Kpelle
type: Class
subclass of: Mande Western
definition: The Kpelle are a Mande Western population with a population size of 2 million.
imported from: hancestro.owl

Kuranko
type: Class
subclass of: Mande Western
definition: A Mande Western population with a population size of > 2 millions
imported from: hancestro.owl

Loko
type: Class
subclass of: Mande Western
definition: A Mande Western population with a population size of 165692
imported from: hancestro.owl

Mano
type: Class
subclass of: Mande Western
definition: A Mande Western population with a population size of 498000
imported from: hancestro.owl

Vai
type: Class
subclass of: Mande Western
definition: A Mande Western population with a population size of 240000
imported from: hancestro.owl

Yalunka
type: Class
subclass of: Mande Western
definition: A Mande Western population with a population size of 206000
imported from: hancestro.owl

Mankanya
type: Class
subclass of: Western African
definition: A Western African population with a population size of 106900
imported from: hancestro.owl

Oron
type: Class
subclass of: Western African
definition: A Western African population with a population size of 1.407 million
imported from: hancestro.owl

Papel
type: Class
subclass of: Western African
definition: A Western African population with a population size of 140000
imported from: hancestro.owl

Sherbro
type: Class
subclass of: Western African
definition: A Western African population with a population size of 134606
imported from: hancestro.owl

Temne
type: Class
subclass of: Western African
definition: A Western African population with a population size of 2,225 Millions
imported from: hancestro.owl

Lebu
type: Class
subclass of: Wolof
definition: A Wolof population with a population size of 210000
imported from: hancestro.owl

Nuna
type: Class
subclass of: Gurunsi
imported from: hancestro.owl

Kango
type: Class
subclass of: Pygmy Central
definition: A Pygmy Central population with a population size of 12500
imported from: hancestro.owl

Ewondo
type: Class
subclass of: Beti-Pahuin
definition: A Beti-Pahuin population with a population size of 2500000
imported from: hancestro.owl

Birwa
type: Class
subclass of: Southern African
definition: A Southern African population with a population size of 35500
imported from: hancestro.owl

Kissi
type: Class
subclass of: Western African
definition: A Western African population with a population size of 1,224,545
imported from: hancestro.owl

Ngazidja
type: Class
subclass of: Swahili
definition: A Swahili population with a population size of 416,200
imported from: hancestro.owl

Maore
type: Class
subclass of: Swahili
definition: A Swahili population with a population size of 217,400
imported from: hancestro.owl

Mwali
type: Class
subclass of: Swahili
definition: A Swahili population with a population size of 45,000
imported from: hancestro.owl

Ndzwani
type: Class
subclass of: Swahili
definition: A Swahili population with a population size of 365,900
imported from: hancestro.owl

Kuria
type: Class
subclass of: Bantu Eastern
definition: A Bantu Eastern population with a population size of 1 million
imported from: hancestro.owl

Karonica
type: Class
subclass of: Jola
definition: A Jola population with a population size of 117000
imported from: hancestro.owl

entity
type: Class
subclass of: Thing
definition: An entity is anything that exists or has existed or will exist.
imported from: apollo sv.owl
imported from: gsso.owl
imported from: oba.owl
imported from: ogms.owl
imported from: pco.owl
imported from: uberon.owl
database_cross_reference: https://www.wikidata.org/wiki/Q35120

continuant
type: Class
subclass of: entity
definition: An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts.
imported from: apollo sv.owl
imported from: oba.owl
imported from: pco.owl
imported from: uberon.owl

occurrent
type: Class
subclass of: entity
definition: An entity that has temporal parts and that happens, unfolds or develops through time.
imported from: ogms.owl
imported from: pco.owl

independent continuant
type: Class
subclass of: continuant
definition: A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything.
definition: b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])
imported from: pco.owl
imported from: uberon.owl

process
type: Class
subclass of: occurrent
definition: A process is an entity that exists in time by occurring or happening, has temporal parts and always involves and depends on some entity during the time it occurs.
definition: An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t.
definition: p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])
definition editor: James Malone
imported from: apollo sv.owl
imported from: chmo.owl
imported from: ecto.owl
imported from: envo.owl
imported from: foodon.owl
imported from: ido.owl
imported from: mondo.owl
imported from: nbo.owl
imported from: ogms.owl
imported from: pato.owl
imported from: pco.owl
imported from: efo.owl
has_alternative_id: http://www.ifomis.org/bfo/1.1/span#ProcessualEntity
database_cross_reference: NCIt:C29862
database_cross_reference: SNOMEDCT:415178003
comment: An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t.

disposition
type: Class
subclass of: realizable entity
definition: A disposition is an entity that causes a specific process or transformation in an entity in which it inheres, under specific circumstances and in conjunction with the laws of nature. For example, the disposition of vegetables to decay when not refrigerated, the disposition of blood to coagulate, the disposition of a patient with a weakened immune system to contract disease.
definition editor: James Malone modified from original
imported from: ido.owl
imported from: mondo.owl
imported from: ogms.owl
imported from: efo.owl
has_alternative_id: http://www.ifomis.org/bfo/1.1/snap#Disposition
database_cross_reference: NCIt:C41205

realizable entity
type: Class
subclass of: material property
imported from: mondo.owl
imported from: ogms.owl

quality
type: Class
subclass of: material property
subclass of: SIO_000614
definition: A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities.
definition: A quality is a specifically dependent continuant that, in contrast to roles and dispositions, does not require any further process in order to be realized.
definition: A quality is an attribute that is intrinsically associated with its bearer (or its parts), but whose presence/absence and observed/measured value may vary.
imported from: gsso.owl
imported from: omit.owl
database_cross_reference: https://en.wikipedia.org/wiki/Quality_(philosophy)
database_cross_reference: http://purl.obolibrary.org/obo/PATO_0000001
database_cross_reference: https://www.wikidata.org/wiki/Q1207505
comment: The etymology of "quality" is fairly well elucidated coming from Middle English, from Old French qualité, from Latin qualitatem, accusative of qualitas, from qualis (“of what kind”), from Proto-Indo-European *kʷo- (“who, how”). Cicero coined qualitas as a calque to translate the Ancient Greek word ποιότης (poiótēs, “quality”), coined by Plato from ποῖος (poîos, “of what nature, of what kind”).

material property
type: Class
subclass of: continuant
definition: A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same.
definition: An experimental factor which is a property or characteristic of some other entity. For example, the mouse has the colour white.
definition: b is a relational specifically dependent continuant = Def. b is a specifically dependent continuant and there are n > 1 independent continuants c1, … cn which are not spatial regions are such that for all 1 i < j n, ci and cj share no common parts, are such that for each 1 i n, b s-depends_on ci at every time t during the course of b’s existence (axiom label in BFO2 Reference: [131-004])
definition: b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence.
definition: b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003])
definition editor: James Malone
definition editor: Sirarat Sarntivijai
imported from: foodon.owl
imported from: gsso.owl
imported from: mondo.owl
imported from: oba.owl
imported from: ogms.owl
imported from: pato.owl
imported from: efo.owl
has_alternative_id: http://www.ifomis.org/bfo/1.1/snap#SpecificallyDependentContinuant
database_cross_reference: BFO:0000020
has exact synonym: SpecificallyDependentContinuant
has exact synonym: specifically dependent continuant
label: characteristic
label: specifically dependent continuant

role
type: Class
subclass of: material property
definition: A realizable entity the manifestation of which brings about some result or end that is not essential to a continuant in virtue of the kind of thing that it is but that can be served or participated in by that kind of continuant in some kinds of natural, social or institutional contexts.
definition: A role is an entity which is borne in a material entity in some kinds of natural, social or institutional contexts, but which is not essential to the fundamental definition of that material entity (i.e. the material entity exists with or without the role). For example, the role of a person as a surgeon, the role of an artificial heart in pumping blood, the role of a chemical compound in an experiment, the role of a drug in the treatment of a disease.
definition editor: James Malone
imported from: ido.owl
imported from: omrse.owl
imported from: efo.owl
has_alternative_id: http://www.ifomis.org/bfo/1.1/snap#Role
database_cross_reference: MeSH:D012380
database_cross_reference: NCIt:C48835
database_cross_reference: http://purl.obolibrary.org/obo/CHEBI_50906

fiat object
type: Class
subclass of: material entity
imported from: envo.owl
label: fiat object part

object aggregate
type: Class
subclass of: material entity
definition source: ISBN:978-3-938793-98-5pp124-158#Thomas Bittner and Barry Smith, 'A Theory of Granular Partitions', in K. Munn and B. Smith (eds.), Applied Ontology: An Introduction, Frankfurt/Lancaster: ontos, 2008, 125-158.
imported from: foodon.owl
imported from: ido.owl

object
type: Class
subclass of: material entity
imported from: envo.owl

generically dependent continuant
type: Class
subclass of: continuant
definition: A continuant that is dependent on one or other independent continuant bearers. For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time.
definition: b is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities. (axiom label in BFO2 Reference: [074-001])
imported from: apollo sv.owl
comment: A continuant that is dependent on one or other independent continuant bearers. For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time.

material entity
type: Class
subclass of: independent continuant
editor preferred label: material entity
definition: A material entity is an entity that exists in full during the length of time of its existence, persists through this time while maintaining its identity and has no temporal parts. For example a heart, a human, a fly, a microarray.
definition: An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time.
definition editor: James Malone
imported from: apollo sv.owl
imported from: chmo.owl
imported from: clo.owl
imported from: envo.owl
imported from: foodon.owl
imported from: ido.owl
imported from: mondo.owl
imported from: pato.owl
imported from: pco.owl
imported from: rbo.owl
imported from: uberon.owl
imported from: brucellosis.owl
imported from: efo.owl
has_alternative_id: http://www.ifomis.org/bfo/1.1/snap#MaterialEntity
has exact synonym: material type

immaterial entity
type: Class
subclass of: independent continuant
imported from: foodon.owl
imported from: mondo.owl
imported from: pato.owl
imported from: uberon.owl

intestinal cell line
type: Class
subclass of: cell line
imported from: bto.owl

kidney cell line
type: Class
subclass of: cell line
imported from: bto.owl

adenocarcinoma cell line
type: Class
subclass of: carcinoma cell line
imported from: bto.owl

colonic cell line
type: Class
subclass of: intestinal cell line
imported from: bto.owl

CACO-2 cell
type: Class
subclass of: colonic adenocarcinoma cell line
definition: Human colon adenocarcinoma cell line, established from the primary colon tumor (adenocarcinoma) of a 72-year-old Caucasian man in 1974.
imported from: bto.owl

carcinoma cell line
type: Class
subclass of: epithelial cell line
imported from: bto.owl

lung cell line
type: Class
subclass of: cell line
imported from: bto.owl

hepatoma cell line
type: Class
subclass of: cell line
definition: Hepatoma is a cancer originating in the liver, in liver cells. More often called hepatocarcinoma or hepatocellular carcinoma.
imported from: bto.owl

glioma cell line
type: Class
subclass of: cell line
definition: A glioma is a type of tumor that starts in the glial cells of the brain or the spine. Gliomas comprise about 30 per cent of all brain tumors and central nervous system tumors, and 80 per cent of all malignant brain tumors.
imported from: bto.owl

lung cancer cell line
type: Class
subclass of: carcinoma cell line
subclass of: lung cell line
imported from: bto.owl

colonic cancer cell line
type: Class
subclass of: colonic cell line
imported from: bto.owl

MDBK cell
type: Class
subclass of: kidney cell line
definition: The MDBK cell line was derived from a kidney of an apparently normal adult steer, February 18, 1957, by S.H. Madin and N.B. Darby.
imported from: bto.owl

epithelial cell line
type: Class
subclass of: cell line
imported from: bto.owl

Vero cell
type: Class
subclass of: kidney cell line
definition: The Vero cell line was initiated from the kidney of a normal adult African green monkey on March 27, 1962, by Y. Yasumura and Y. Kawakita at the Chiba University in Chiba, Japan.
imported from: bto.owl

PK-15 cell
type: Class
subclass of: kidney cell line
definition: Pig kidney cell line. Original line: PK-2a; contains type C viruses. Morphology: epithelial-like.
imported from: bto.owl

lung adenocarcinoma cell line
type: Class
subclass of: adenocarcinoma cell line
subclass of: lung cancer cell line
imported from: bto.owl

colonic adenocarcinoma cell line
type: Class
subclass of: colonic cancer cell line
imported from: bto.owl

HuH-7 cell
type: Class
subclass of: hepatoma cell line
definition: Human hepatoma cell line.
imported from: bto.owl

bronchial epithelial cell line
type: Class
subclass of: lung cell line
subclass of: respiratory epithelium cell line
imported from: bto.owl

U-251MG cell
type: Class
subclass of: glioma cell line
definition: Human glioma cell line. Morphology: glial; Species: human; Tumor: glioma.
imported from: bto.owl

HEK-293T cell
type: Class
subclass of: cell line
definition: A highly transformed human renal epithelial line expressing two viral oncogenes, adenovirus E1a and SV40 large T antigen.
imported from: bto.owl

respiratory epithelium cell line
type: Class
subclass of: cell line
imported from: bto.owl

Calu-3 cell
type: Class
subclass of: lung adenocarcinoma cell line
definition: Human lung adenocarcinoma cell line; established from a 25-year-old caucasian male.
imported from: bto.owl

renal epithelium cell line
type: Class
subclass of: cell line
imported from: bto.owl

RK-13 cell
type: Class
subclass of: renal epithelium cell line
definition: Rabbit renal epithelium cell line.
imported from: bto.owl

NHBE cell
type: Class
subclass of: bronchial epithelial cell line
definition: Normal human bronchial epithelial cell line.
imported from: bto.owl

VERO C1008 cell
type: Class
subclass of: cell line
definition: This line is a clone of VERO 76.
imported from: bto.owl

nalidixic acid
type: Class
subclass of: monocarboxylic acid
subclass of: 1,8-naphthyridine derivative
subclass of: quinolone antibiotic
definition: A monocarboxylic acid comprising 1,8-naphthyridin-4-one substituted by carboxylic acid, ethyl and methyl groups at positions 3, 1, and 7, respectively. An orally administered antibacterial, it is used in the treatment of lower urinary-tract infections due to Gram-negative bacteria, including the majority of E. coli, Enterobacter, Klebsiella, and Proteus species.
imported from: chebi.owl
has_alternative_id: CHEBI:7456

ciprofloxacin
type: Class
subclass of: quinolone
subclass of: quinolinemonocarboxylic acid
subclass of: aminoquinoline
subclass of: N-arylpiperazine
subclass of: cyclopropanes
subclass of: quinolone antibiotic
subclass of: fluoroquinolone antibiotic
definition: A quinolone that is quinolin-4(1H)-one bearing cyclopropyl, carboxylic acid, fluoro and piperazin-1-yl substituents at positions 1, 3, 6 and 7, respectively.
imported from: chebi.owl
has_alternative_id: CHEBI:102718
has_alternative_id: CHEBI:3717
has_alternative_id: CHEBI:41638

norfloxacin
type: Class
subclass of: quinolone
subclass of: quinolinemonocarboxylic acid
subclass of: N-arylpiperazine
subclass of: quinolone antibiotic
subclass of: fluoroquinolone antibiotic
definition: A quinolinemonocarboxylic acid with broad-spectrum antibacterial activity against most gram-negative and gram-positive bacteria. Norfloxacin is bactericidal and its mode of action depends on blocking of bacterial DNA replication by binding itself to an enzyme called DNA gyrase.
imported from: chebi.owl
has_alternative_id: CHEBI:7629

sulfamethazine
type: Class
subclass of: pyrimidines
subclass of: sulfonamide antibiotic
definition: A sulfonamide consisting of pyrimidine with methyl substituents at the 4- and 6-positions and a 4-aminobenzenesulfonamido group at the 2-position.
imported from: chebi.owl

sulfisoxazole
type: Class
subclass of: isoxazoles
subclass of: sulfonamide antibiotic
definition: A sulfonamide antibacterial with an oxazole substituent. It has antibiotic activity against a wide range of gram-negative and gram-positive organisms.
imported from: chebi.owl
has_alternative_id: CHEBI:9343

lomefloxacin
type: Class
subclass of: quinolone
subclass of: quinolinemonocarboxylic acid
subclass of: N-arylpiperazine
subclass of: quinolone antibiotic
subclass of: fluoroquinolone antibiotic
definition: A fluoroquinolone antibiotic, used (generally as the hydrochloride salt) to treat bacterial infections including bronchitis and urinary tract infections. It is also used to prevent urinary tract infections prior to surgery.
imported from: chebi.owl
has_alternative_id: CHEBI:6517

cefalotin
type: Class
subclass of: cephalosporin
subclass of: thiophenes
subclass of: carboxylic acid
subclass of: azabicycloalkene
subclass of: semisynthetic derivative
subclass of: beta-lactam antibiotic allergen
definition: A semisynthetic, first-generation cephalosporin antibiotic with acetoxymethyl and (2-thienylacetyl)nitrilo moieties at positions 3 and 7, respectively, of the core structure. Administered parenterally during surgery and to treat a wide spectrum of blood infections.
imported from: chebi.owl
has_alternative_id: CHEBI:41547
has_alternative_id: CHEBI:50895

dicarboxylic acids and O-substituted derivatives
type: Class
subclass of: carbonyl compound
definition: A class of carbonyl compound encompassing dicarboxylic acids and any derivatives obtained by substitution of either one or both of the carboxy hydrogens.
imported from: chebi.owl

anilide
type: Class
subclass of: benzenes
subclass of: aromatic amide
definition: Any aromatic amide obtained by acylation of aniline.
imported from: chebi.owl

delamanid
type: Class
subclass of: piperidines
subclass of: second line or reserve tuberculosis drug
imported from: chebi.owl

thioacetazone
type: Class
subclass of: anilide
subclass of: acetamides
subclass of: second line or reserve tuberculosis drug
imported from: chebi.owl

terizidone
type: Class
subclass of: organonitrogen compound
subclass of: organooxygen compound
subclass of: second line or reserve tuberculosis drug
alternative term: Trd
imported from: chebi.owl

gas molecular entity
type: Class
subclass of: main group molecular entity
definition: Any main group molecular entity that is gaseous at standard temperature and pressure (STP; 0degreeC and 100 kPa).
imported from: chebi.owl

alpha-hydroxy ketone
type: Class
subclass of: alcohol
subclass of: alpha-oxyketone
definition: An alpha-oxyketone that has a hydroxy group as the alpha-oxy moiety.
imported from: chebi.owl

tertiary alpha-hydroxy ketone
type: Class
subclass of: alpha-hydroxy ketone
subclass of: tertiary alcohol
definition: An alpha-hydroxy ketone in which the carbonyl group and the hydroxy group are linked by a carbon bearing two organyl groups.
imported from: chebi.owl

secondary carboxamide
type: Class
subclass of: carboxamide
definition: A carboxamide resulting from the formal condensation of a carboxylic acid with a primary amine; formula RC(=O)NHR(1).
imported from: chebi.owl

tertiary carboxamide
type: Class
subclass of: carboxamide
definition: A carboxamide resulting from the formal condensation of a carboxylic acid with a secondary amine; formula RC(=O)NHR(1)R(2).
imported from: chebi.owl

organometalloidal compound
type: Class
subclass of: organic molecular entity
definition: A compound having bonds between one or more metalloid atoms and one or more carbon atoms of an organyl group.
imported from: chebi.owl

pyranobenzodioxin
type: Class
subclass of: organic heterotricyclic compound
subclass of: oxacycle
definition: Any organic heterotricyclic compound whose core skeleton consists of a benzodioxin ring that is ortho-fused to a pyran ring.
imported from: chebi.owl

actinomycin
type: Class
subclass of: chromopeptide
definition: A large group of antibiotics isolated from various species of Streptomyces and characterised by having a substituted phenoxazine ring linked to two cyclic heterodetic peptides.
imported from: chebi.owl
has_alternative_id: CHEBI:13723
has_alternative_id: CHEBI:22220
has_alternative_id: CHEBI:2445

dioxygen
type: Class
subclass of: gas molecular entity
subclass of: elemental molecule
subclass of: diatomic oxygen
imported from: chebi.owl
has_alternative_id: CHEBI:10745
has_alternative_id: CHEBI:13416
has_alternative_id: CHEBI:23833
has_alternative_id: CHEBI:25366
has_alternative_id: CHEBI:30491
has_alternative_id: CHEBI:44742
has_alternative_id: CHEBI:7860

enoxacin
type: Class
subclass of: monocarboxylic acid
subclass of: amino acid
subclass of: N-arylpiperazine
subclass of: 1,8-naphthyridine derivative
subclass of: quinolone antibiotic
subclass of: fluoroquinolone antibiotic
definition: A 1,8-naphthyridine derivative that is 1,4-dihydro-1,8-naphthyridine with an ethyl group at the 1 position, a carboxy group at the 3-position, an oxo sustituent at the 4-position, a fluoro substituent at the 5-position and a piperazin-1-yl group at the 7 position. An antibacterial, it is used in the treatment of urinary-tract infections and gonorrhoea.
imported from: chebi.owl
has_alternative_id: CHEBI:4796

primary alcohol
type: Class
subclass of: alcohol
definition: A primary alcohol is a compound in which a hydroxy group, -OH, is attached to a saturated carbon atom which has either three hydrogen atoms attached to it or only one other carbon atom and two hydrogen atoms attached to it.
imported from: chebi.owl
has_alternative_id: CHEBI:13676
has_alternative_id: CHEBI:14887
has_alternative_id: CHEBI:26262
has_alternative_id: CHEBI:57489
has_alternative_id: CHEBI:8406

viomycin
type: Class
subclass of: heterodetic cyclic peptide
subclass of: peptide antibiotic
definition: A cyclic peptide antibiotic produced by the actinomycete Streptomyces puniceus, used in the treatment of tuberculosis.
imported from: chebi.owl
has_alternative_id: CHEBI:15312
has_alternative_id: CHEBI:27296
has_alternative_id: CHEBI:579539
has_alternative_id: CHEBI:9995

polypeptide
type: Class
subclass of: peptide
subclass of: macromolecule
definition: A peptide containing ten or more amino acid residues.
imported from: chebi.owl
has_alternative_id: CHEBI:14860
has_alternative_id: CHEBI:8314

polynucleotide
type: Class
subclass of: information biomacromolecule
subclass of: nucleobase-containing molecular entity
definition: A nucleobase-containing molecular entity with a polymeric structure comprised of a linear sequence of 13 or more nucleotide residues.
imported from: chebi.owl
has_alternative_id: CHEBI:13672
has_alternative_id: CHEBI:14859
has_alternative_id: CHEBI:8312

aztreonam
type: Class
subclass of: monobactam
subclass of: beta-lactam antibiotic allergen
definition: A synthetic monocyclic beta-lactam antibiotic (monobactam), used primarily to treat infections caused by Gram-negative bacteria. It inhibits mucopeptide synthesis in the bacterial cell wall, thereby blocking peptidoglycan crosslinking.
imported from: chebi.owl
has_alternative_id: CHEBI:2960
has_alternative_id: CHEBI:41008

phospholipid
type: Class
subclass of: lipid
subclass of: organic phosphate
subclass of: phosphoric ester
definition: A lipid containing phosphoric acid as a mono- or di-ester. The term encompasses phosphatidic acids and phosphoglycerides.
imported from: chebi.owl
has_alternative_id: CHEBI:14816
has_alternative_id: CHEBI:26063
has_alternative_id: CHEBI:8150

nitrite
type: Class
subclass of: nitrogen oxoanion
subclass of: reactive nitrogen species
subclass of: monovalent inorganic anion
definition: The nitrogen oxoanion formed by loss of a proton from nitrous acid.
imported from: chebi.owl
has_alternative_id: CHEBI:14658
has_alternative_id: CHEBI:44396
has_alternative_id: CHEBI:7585

organic sulfide
type: Class
subclass of: sulfide
subclass of: organosulfur compound
definition: Compounds having the structure RSR (R =/= H). Such compounds were once called thioethers.
imported from: chebi.owl
has_alternative_id: CHEBI:13694
has_alternative_id: CHEBI:26960
has_alternative_id: CHEBI:9340

triclosan
type: Class
subclass of: dichlorobenzene
subclass of: phenols
subclass of: aromatic ether
subclass of: monochlorobenzenes
definition: An aromatic ether that is phenol which is substituted at C-5 by a chloro group and at C-2 by a 2,4-dichlorophenoxy group. It is widely used as a preservative and antimicrobial agent in personal care products such as soaps, skin creams, toothpaste and deodorants as well as in household items such as plastic chopping boards, sports equipment and shoes.
imported from: chebi.owl
has_alternative_id: CHEBI:29697
has_alternative_id: CHEBI:47700

alanine
type: Class
subclass of: alpha-amino acid
definition: An alpha-amino acid that consists of propionic acid bearing an amino substituent at position 2.
imported from: chebi.owl
has_alternative_id: CHEBI:13748
has_alternative_id: CHEBI:22277
has_alternative_id: CHEBI:2539

protein polypeptide chain
type: Class
subclass of: polypeptide
definition: A naturally occurring polypeptide synthesized at the ribosome.
imported from: chebi.owl
has_alternative_id: CHEBI:8526

peptide
type: Class
subclass of: carboxamide
subclass of: organic amino compound
definition: Amide derived from two or more amino carboxylic acid molecules (the same or different) by formation of a covalent bond from the carbonyl carbon of one to the nitrogen atom of another with formal loss of water. The term is usually applied to structures formed from alpha-amino acids, but it includes those derived from any amino carboxylic acid. X = OH, OR, NH2, NHR, etc.
imported from: chebi.owl
has_alternative_id: CHEBI:14753
has_alternative_id: CHEBI:25906
has_alternative_id: CHEBI:7990

glycan
type: Class
subclass of: carbohydrates and carbohydrate derivatives
definition: Any oligosaccharide, polysaccharide or their derivatives consisting of monosaccharides or monosaccharide derivatives linked by glycosidic bonds. See also http://www.ontobee.org/ontology/GNO?iri=http://purl.obolibrary.org/obo/GNO_00000001.
imported from: chebi.owl

oleandomycin
type: Class
subclass of: oleandomycins
imported from: chebi.owl
has_alternative_id: CHEBI:14682
has_alternative_id: CHEBI:25659
has_alternative_id: CHEBI:7737

deoxyribonucleic acid
type: Class
subclass of: nucleic acid
definition: High molecular weight, linear polymers, composed of nucleotides containing deoxyribose and linked by phosphodiester bonds; DNA contain the genetic information of organisms.
imported from: chebi.owl
has_alternative_id: CHEBI:13302
has_alternative_id: CHEBI:21123
has_alternative_id: CHEBI:33698
has_alternative_id: CHEBI:4291

streptomycin
type: Class
subclass of: streptomycins
subclass of: antibiotic antifungal drug
subclass of: antibiotic fungicide
subclass of: second line or reserve tuberculosis drug
subclass of: GENEPIO_0002071
definition: A amino cyclitol glycoside that consists of streptidine having a disaccharyl moiety attached at the 4-position. The parent of the streptomycin class
alternative term: STR
alternative term: Sm
alternative term: Stm
imported from: chebi.owl
has_alternative_id: CHEBI:15119
has_alternative_id: CHEBI:26784
has_alternative_id: CHEBI:45745
has_alternative_id: CHEBI:9284

ketone
type: Class
subclass of: carbonyl compound
definition: A compound in which a carbonyl group is bonded to two carbon atoms: R2C=O (neither R may be H).
imported from: chebi.owl
has_alternative_id: CHEBI:13427
has_alternative_id: CHEBI:13646
has_alternative_id: CHEBI:24974
has_alternative_id: CHEBI:6127
has_alternative_id: CHEBI:8742

nicotinamide
type: Class
subclass of: vitamin B3
subclass of: pyridinecarboxamide
subclass of: pyridine alkaloid
subclass of: antimicrobial resistance test drug
definition: A pyridinecarboxamide that is pyridine in which the hydrogen at position 3 is replaced by a carboxamide group.
imported from: chebi.owl
has_alternative_id: CHEBI:14645
has_alternative_id: CHEBI:25521
has_alternative_id: CHEBI:44258
has_alternative_id: CHEBI:7556

penicillin
type: Class
subclass of: penicillanic acids
definition: Any member of the group of substituted penams containing two methyl substituents at position 2, a carboxylate substituent at position 3 and a carboxamido group at position 6.
imported from: chebi.owl
has_alternative_id: CHEBI:14742
has_alternative_id: CHEBI:25869
has_alternative_id: CHEBI:7961

aldehyde
type: Class
subclass of: carbonyl compound
definition: A compound RC(=O)H, in which a carbonyl group is bonded to one hydrogen atom and to one R group.
imported from: chebi.owl
has_alternative_id: CHEBI:13432
has_alternative_id: CHEBI:13753
has_alternative_id: CHEBI:13805
has_alternative_id: CHEBI:13806
has_alternative_id: CHEBI:22291
has_alternative_id: CHEBI:2554
has_alternative_id: CHEBI:8750

kanamycin A
type: Class
subclass of: kanamycins
imported from: chebi.owl
has_alternative_id: CHEBI:14487
has_alternative_id: CHEBI:24945
has_alternative_id: CHEBI:24947
has_alternative_id: CHEBI:43482
has_alternative_id: CHEBI:6106

nitrate
type: Class
subclass of: nitrogen oxoanion
subclass of: reactive nitrogen species
subclass of: monovalent inorganic anion
definition: A nitrogen oxoanion formed by loss of a proton from nitric acid. Principal species present at pH 7.3.
imported from: chebi.owl
has_alternative_id: CHEBI:14654
has_alternative_id: CHEBI:44487
has_alternative_id: CHEBI:71263

tylosin
type: Class
subclass of: aldehyde
subclass of: leucomycin
subclass of: macrolide antibiotic
subclass of: enone
subclass of: disaccharide derivative
subclass of: monosaccharide derivative
definition: A macrolide antibiotic that is tylonolide having mono- and diglycosyl moieties attached to two of its hydroxy groups. It is found naturally as a fermentation product of Streptomyces fradiae.
imported from: chebi.owl
has_alternative_id: CHEBI:15275
has_alternative_id: CHEBI:27172
has_alternative_id: CHEBI:46150
has_alternative_id: CHEBI:9787

vitamin B3
type: Class
subclass of: B vitamin
definition: Any member of a group of vitamers that belong to the chemical structural class called pyridines that exhibit biological activity against vitamin B3 deficiency. Vitamin B3 deficiency causes a condition known as pellagra whose symptoms include depression, dermatitis and diarrhea. The vitamers include nicotinic acid and nicotinamide (and their ionized and salt forms).
imported from: chebi.owl

chloramphenicol
type: Class
subclass of: diol
subclass of: C-nitro compound
subclass of: organochlorine compound
subclass of: carboxamide
definition: An organochlorine compound that is dichloro-substituted acetamide containing a nitrobenzene ring, an amide bond and two alcohol functions.
imported from: chebi.owl
has_alternative_id: CHEBI:13965
has_alternative_id: CHEBI:23106
has_alternative_id: CHEBI:23108
has_alternative_id: CHEBI:3603
has_alternative_id: CHEBI:47327

organohalogen compound
type: Class
subclass of: heteroorganic entity
subclass of: halide
definition: A compound containing at least one carbon-halogen bond (where X is a halogen atom).
imported from: chebi.owl
has_alternative_id: CHEBI:13444
has_alternative_id: CHEBI:36684
has_alternative_id: CHEBI:8767

puromycin
type: Class
subclass of: puromycins
subclass of: antimicrobial resistance test drug
definition: An aminonucleoside antibiotic, derived from the Streptomyces alboniger bacterium, that causes premature chain termination during translation taking place in the ribosome.
imported from: chebi.owl
has_alternative_id: CHEBI:14970
has_alternative_id: CHEBI:26402
has_alternative_id: CHEBI:45182
has_alternative_id: CHEBI:8641

lipid
type: Class
subclass of: organic molecular entity
definition: 'Lipids' is a loosely defined term for substances of biological origin that are soluble in nonpolar solvents. They consist of saponifiable lipids, such as glycerides (fats and oils) and phospholipids, as well as nonsaponifiable lipids, principally steroids.
imported from: chebi.owl
has_alternative_id: CHEBI:14517
has_alternative_id: CHEBI:25054
has_alternative_id: CHEBI:6486

ribosomal RNA
type: Class
subclass of: ribonucleic acid
definition: RNA molecules which are essential structural and functional components of ribosomes, the subcellular units responsible for protein synthesis.
imported from: chebi.owl
has_alternative_id: CHEBI:10636
has_alternative_id: CHEBI:15010

isopenicillin N
type: Class
subclass of: penicillin
imported from: chebi.owl
has_alternative_id: CHEBI:14472
has_alternative_id: CHEBI:43447
has_alternative_id: CHEBI:6036

penicillin N
type: Class
subclass of: penicillin
imported from: chebi.owl
has_alternative_id: CHEBI:14744
has_alternative_id: CHEBI:25867
has_alternative_id: CHEBI:7964

benzylpenicillin
type: Class
subclass of: penicillin allergen
definition: A penicillin in which the substituent at position 6 of the penam ring is a phenylacetamido group.
imported from: chebi.owl
has_alternative_id: CHEBI:14743
has_alternative_id: CHEBI:25866
has_alternative_id: CHEBI:45073
has_alternative_id: CHEBI:7962

ribonucleoside
type: Class
subclass of: nucleoside
subclass of: dihydroxytetrahydrofuran
definition: Any nucleoside where the sugar component is D-ribose.
imported from: chebi.owl
has_alternative_id: CHEBI:13014
has_alternative_id: CHEBI:13015
has_alternative_id: CHEBI:13685
has_alternative_id: CHEBI:21085
has_alternative_id: CHEBI:26560
has_alternative_id: CHEBI:4240
has_alternative_id: CHEBI:8844

11alpha-hydroxy steroid
type: Class
subclass of: 11-hydroxy steroid
imported from: chebi.owl

9-fluoro-3-methyl-10-(4-methylpiperazin-1-yl)-7-oxo-2,3-dihydro-7H-[1,4]oxazino[2,3,4-ij]quinoline-6-carboxylic acid
type: Class
subclass of: organofluorine compound
subclass of: N-arylpiperazine
subclass of: N-methylpiperazine
subclass of: 3-oxo monocarboxylic acid
subclass of: oxazinoquinoline
definition: An oxazinoquinoline that is 2,3-dihydro-7H-[1,4]oxazino[2,3,4-ij]quinolin-7-one substituted by methyl, carboxy, fluoro, and 4-methylpiperazin-1-yl groups at positions 3, 6, 9, and 10, respectively.
imported from: chebi.owl

cefotaxime
type: Class
subclass of: cephalosporin
subclass of: oxime O-ether
subclass of: 1,3-thiazoles
definition: A cephalosporin compound having acetoxymethyl and [2-(2-amino-1,3-thiazol-4-yl)-2-(methoxyimino)acetyl]amino side groups.
imported from: chebi.owl
has_alternative_id: CHEBI:112504
has_alternative_id: CHEBI:3497
has_alternative_id: CHEBI:41475

cefoxitin
type: Class
subclass of: cephalosporin
subclass of: cephamycin
subclass of: semisynthetic derivative
subclass of: beta-lactam antibiotic allergen
definition: A semisynthetic cephamycin antibiotic which, in addition to the methoxy group at the 7alpha position, has 2-thienylacetamido and carbamoyloxymethyl side-groups. It is resistant to beta-lactamase.
imported from: chebi.owl
has_alternative_id: CHEBI:3500
has_alternative_id: CHEBI:41436
has_alternative_id: CHEBI:471714
has_alternative_id: CHEBI:658070

N-glycosyl compound
type: Class
subclass of: organonitrogen compound
subclass of: glycosyl compound
definition: A glycosyl compound arising formally from the elimination of water from a glycosidic hydroxy group and an H atom bound to a nitrogen atom, thus creating a C-N bond.
imported from: chebi.owl

acetamides
type: Class
subclass of: carboxamide
definition: Compounds with the general formula RNHC(=O)CH3.
imported from: chebi.owl

acridines
type: Class
subclass of: dibenzopyridine
imported from: chebi.owl

adenosines
type: Class
subclass of: purine ribonucleoside
definition: Any purine ribonucleoside that is a derivative of adenosine.
imported from: chebi.owl

alkaloid
type: Class
subclass of: organonitrogen compound
definition: Any of the naturally occurring, basic nitrogen compounds (mostly heterocyclic) occurring mostly in the plant kingdom, but also found in bacteria, fungi, and animals. By extension, certain neutral compounds biogenetically related to basic alkaloids are also classed as alkaloids. Amino acids, peptides, proteins, nucleotides, nucleic acids, amino sugars and antibiotics are not normally regarded as alkaloids. Compounds in which the nitrogen is exocyclic (dopamine, mescaline, serotonin, etc.) are usually classed as amines rather than alkaloids.
imported from: chebi.owl

alpha-D-glucoside
type: Class
subclass of: D-glucoside
subclass of: alpha-glucoside
imported from: chebi.owl

amino alcohol
type: Class
subclass of: alcohol
subclass of: organic amino compound
definition: An alcohol containing an amino functional group in addition to the alcohol-defining hydroxy group.
imported from: chebi.owl

amino cyclitol glycoside
type: Class
subclass of: cyclitol
subclass of: glycoside
imported from: chebi.owl

aminobenzoic acid
type: Class
subclass of: benzoic acids
subclass of: aromatic amino acid
imported from: chebi.owl

aminoglycoside antibiotic
type: Class
subclass of: carbohydrate-containing antibiotic
subclass of: aminoglycoside
imported from: chebi.owl

anilines
type: Class
subclass of: benzenes
subclass of: aromatic amine
definition: Any aromatic amine that is benzene carrying at least one amino substituent and its substituted derivatives.
imported from: chebi.owl

anion
type: Class
subclass of: ion
definition: A monoatomic or polyatomic species having one or more elementary charges of the electron.
imported from: chebi.owl

ansamycin
type: Class
subclass of: lactam
subclass of: polyketide
subclass of: macrocycle
definition: A class of macrocyclic lactams that consist of an aromatic (phenyl or naphthyl) or quinonoid (benzoquinone or naphthoquinone) moiety that is bridged by an aliphatic chain.
imported from: chebi.owl

obsolete: antibiotic
type: Class
imported from: chebi.owl
term replaced by: antimicrobial agent
deprecated: true

arsenic molecular entity
type: Class
subclass of: pnictogen molecular entity
imported from: chebi.owl

benzenes
type: Class
subclass of: benzenoid aromatic compound
definition: Any benzenoid aromatic compound consisting of the benzene skeleton and its substituted derivatives.
imported from: chebi.owl

benzoic acids
type: Class
subclass of: benzenes
subclass of: aromatic carboxylic acid
definition: Any aromatic carboxylic acid that consists of benzene in which at least a single hydrogen has been substituted by a carboxy group.
imported from: chebi.owl

benzopyran
type: Class
subclass of: oxacycle
subclass of: organic heteropolycyclic compound
imported from: chebi.owl

bleomycin
type: Class
subclass of: chelate-forming peptide
subclass of: glycopeptide
definition: A glycopeptide produced by the bacterium Streptomyces verticillus. The term, 'bleomycin' refers to a family of structurally related compounds. When used as an anti-cancer agent, the chemotherapeutical forms are primarily bleomycin A2 and B2.
imported from: chebi.owl
has_alternative_id: CHEBI:584977

bromine molecular entity
type: Class
subclass of: halogen molecular entity
imported from: chebi.owl

calcium molecular entity
type: Class
subclass of: alkaline earth molecular entity
imported from: chebi.owl

carbamate ester
type: Class
subclass of: carboxylic ester
definition: Any ester of carbamic acid or its N-substituted derivatives.
imported from: chebi.owl

carbohydrate-containing antibiotic
type: Class
subclass of: carbohydrate derivative
definition: Any carbohydrate derivative that exhibits antibiotic activity.
imported from: chebi.owl

cephalosporin
type: Class
subclass of: cephem
definition: A class of beta-lactam antibiotics differing from the penicillins in having a 6-membered, rather than a 5-membered, side ring. Although cephalosporins are among the most commonly used antibiotics in the treatment of routine infections, and their use is increasing over time, they can cause a range of hypersensitivity reactions, from mild, delayed-onset cutaneous reactions to life-threatening anaphylaxis in patients with immunoglobulin E (IgE)-mediated allergy.
imported from: chebi.owl
has_alternative_id: CHEBI:3538

chelate-forming peptide
type: Class
subclass of: peptide antibiotic
imported from: chebi.owl

chloride salt
type: Class
subclass of: chlorine molecular entity
subclass of: halide salt
imported from: chebi.owl

chlorine molecular entity
type: Class
subclass of: halogen molecular entity
definition: A halogen molecular entity containing one or more atoms of chlorine.
imported from: chebi.owl

chlorobenzenes
type: Class
subclass of: benzenes
subclass of: organochlorine compound
definition: Any organochlorine compound containing a benzene ring which is substituted by one or more chlorines.
imported from: chebi.owl

chromenes
type: Class
subclass of: 1-benzopyran
imported from: chebi.owl

chromopeptide
type: Class
subclass of: peptide antibiotic
imported from: chebi.owl

molecular entity
type: Class
subclass of: chemical entity
definition: Any constitutionally or isotopically distinct atom, molecule, ion, ion pair, radical, radical ion, complex, conformer etc., identifiable as a separately distinguishable entity.
imported from: chebi.owl
imported from: ido.owl

coumarins
type: Class
subclass of: phenylpropanoid
subclass of: chromenone
imported from: chebi.owl

cyclic amide
type: Class
subclass of: amide
imported from: chebi.owl
has_alternative_id: CHEBI:3990

cyclic peptide
type: Class
subclass of: peptide
imported from: chebi.owl

cyclitol
type: Class
subclass of: polyol
definition: A polyol consisting of a cycloalkane containing at least three hydroxy groups, each attached to a different ring carbon atom.
imported from: chebi.owl

4-amino-1,2-oxazolidin-3-one
type: Class
subclass of: serine derivative
subclass of: oxazolidines
subclass of: primary amino compound
subclass of: hydroxamic acid ester
definition: A member of the class of oxazolidines that is isoxazoldin-3-one which is substituted at position 4 by an amino group.
imported from: chebi.owl

depsipeptide
type: Class
subclass of: peptide
definition: A natural or synthetic compound having a sequence of amino and hydroxy carboxylic acid residues (usually alpha-amino and alpha-hydroxy acids), commonly but not necessarily regularly alternating.
imported from: chebi.owl

diazole
type: Class
subclass of: azole
definition: An azole that is either one of a pair of heterocyclic organic compounds comprising three carbon atoms and two nitrogen atoms arranged in a ring.
imported from: chebi.owl

dichlorobenzene
type: Class
subclass of: chlorobenzenes
definition: Any member of the class of chlorobenzenes carrying two chloro groups at unspecified positions.
imported from: chebi.owl

pyrroline
type: Class
subclass of: organic heteromonocyclic compound
subclass of: organonitrogen heterocyclic compound
definition: Any organic heteromonocyclic compound with a structure based on a dihydropyrrole.
imported from: chebi.owl

quinolone
type: Class
subclass of: quinolines
imported from: chebi.owl

diol
type: Class
subclass of: polyol
definition: A compound that contains two hydroxy groups, generally assumed to be, but not necessarily, alcoholic. Aliphatic diols are also called glycols.
imported from: chebi.owl

erythromycins
type: Class
subclass of: macrolide antibiotic
imported from: chebi.owl

ethanolamines
type: Class
subclass of: amino alcohol
imported from: chebi.owl

fluorine molecular entity
type: Class
subclass of: halogen molecular entity
imported from: chebi.owl

furans
type: Class
subclass of: organic heteromonocyclic compound
subclass of: oxacycle
definition: Compounds containing at least one furan ring.
imported from: chebi.owl

glucoside
type: Class
subclass of: hexoside
imported from: chebi.owl

glycopeptide
type: Class
subclass of: peptide
subclass of: carbohydrate derivative
definition: Any carbohydrate derivative that consists of glycan moieties covalently attached to the side chains of the amino acid residues that constitute the peptide.
imported from: chebi.owl
has_alternative_id: CHEBI:24395
has_alternative_id: CHEBI:5478

glycophospholipid
type: Class
subclass of: phospholipid
subclass of: glycolipid
definition: Any phospholipid that contain both phosphate and carbohydrate as integral structural components.
imported from: chebi.owl

glycoside
type: Class
subclass of: glycosyl compound
definition: A glycosyl compound resulting from the attachment of a glycosyl group to a non-acyl group RO-, RS-, RSe-, etc. The bond between the glycosyl group and the non-acyl group is called a glycosidic bond. By extension, the terms N-glycosides and C-glycosides are used as class names for glycosylamines and for compounds having a glycosyl group attached to a hydrocarbyl group respectively. These terms are misnomers and should not be used. The preferred terms are glycosylamines and C-glycosyl compounds, respectively.
imported from: chebi.owl

chemical entity
type: Class
subclass of: material entity
definition: A chemical entity is a physical entity of interest in chemistry including molecular entities, parts thereof, and chemical substances.
imported from: chebi.owl

biological role
type: Class
subclass of: role
definition: A role played by the molecular entity or part thereof within a biological context.
imported from: chebi.owl

halogen molecular entity
type: Class
subclass of: p-block molecular entity
imported from: chebi.owl

heterocyclic antibiotic
type: Class
subclass of: organic heterocyclic compound
subclass of: antimicrobial resistance test drug
imported from: chebi.owl

organic heterocyclic compound
type: Class
subclass of: heteroorganic entity
subclass of: organic cyclic compound
subclass of: heterocyclic compound
definition: A cyclic compound having as ring members atoms of carbon and at least of one other element.
imported from: chebi.owl

heterodetic cyclic peptide
type: Class
subclass of: cyclic peptide
definition: A heterodetic cyclic peptide is a peptide consisting only of amino-acid residues, but in which the linkages forming the ring are not solely peptide bonds; one or more is an isopeptide, disulfide, ester, or other bond.
imported from: chebi.owl

homodetic cyclic peptide
type: Class
subclass of: cyclic peptide
definition: A homodetic cyclic peptide is a cyclic peptide in which the ring consists solely of amino-acid residues in peptide linkages.
imported from: chebi.owl

imidazolidine-2,4-dione
type: Class
subclass of: imidazolidinone
definition: An imidazolidinone with oxo groups at position 2 and 4.
imported from: chebi.owl

hydroxamic acid
type: Class
subclass of: carboxamide
definition: A compound, RkE(=O)lNHOH, derived from an oxoacid RkE(=O)l(OH) (l =/= 0) by replacing -OH with -NHOH, and derivatives thereof. Specific examples of hydroxamic acids are preferably named as N-hydroxy amides.
imported from: chebi.owl

hydroxides
type: Class
subclass of: oxygen molecular entity
subclass of: hydrogen molecular entity
subclass of: heteroatomic molecular entity
definition: Hydroxides are chemical compounds containing a hydroxy group or salts containing hydroxide (OH(-)).
imported from: chebi.owl

hydroxybenzoic acid
type: Class
subclass of: benzoic acids
subclass of: phenols
definition: Any benzoic acid carrying one or more phenolic hydroxy groups on the benzene ring.
imported from: chebi.owl
has_alternative_id: CHEBI:50778

imidazoles
type: Class
subclass of: diazole
definition: A five-membered organic heterocycle containing two nitrogen atoms at positions 1 and 3, or any of its derivatives; compounds containing an imidazole skeleton.
imported from: chebi.owl

imide
type: Class
subclass of: secondary amide
imported from: chebi.owl

oxoacid
type: Class
subclass of: hydroxides
definition: A compound which contains oxygen, at least one other element, and at least one hydrogen bound to oxygen, and which produces a conjugate base by loss of positive hydrogen ion(s) (hydrons).
imported from: chebi.owl

inorganic anion
type: Class
subclass of: anion
subclass of: inorganic ion
imported from: chebi.owl

inorganic molecular entity
type: Class
subclass of: molecular entity
definition: A molecular entity that contains no carbon.
imported from: chebi.owl

salt
type: Class
subclass of: heteroatomic molecular entity
definition: A salt is an assembly of cations and anions.
imported from: chebi.owl

organic salt
type: Class
subclass of: salt
imported from: chebi.owl

ion
type: Class
subclass of: molecular entity
definition: A molecular entity having a net electric charge.
imported from: chebi.owl

kanamycins
type: Class
subclass of: amino cyclitol glycoside
subclass of: aminoglycoside antibiotic
imported from: chebi.owl

ketoxime
type: Class
subclass of: oxime
definition: Oximes of ketones R2C=NOH (where R =/= H).
imported from: chebi.owl

lactam
type: Class
subclass of: cyclic amide
subclass of: carboxamide
subclass of: organonitrogen heterocyclic compound
definition: Cyclic amides of amino carboxylic acids, having a 1-azacycloalkan-2-one structure, or analogues having unsaturation or heteroatoms replacing one or more carbon atoms of the ring.
imported from: chebi.owl

lactone
type: Class
subclass of: carboxylic ester
subclass of: oxacycle
definition: Any cyclic carboxylic ester containing a 1-oxacycloalkan-2-one structure, or an analogue having unsaturation or heteroatoms replacing one or more carbon atoms of the ring.
imported from: chebi.owl

leucomycin
type: Class
subclass of: macrolide
imported from: chebi.owl

lipopeptide antibiotic
type: Class
subclass of: peptide antibiotic
subclass of: lipopeptide
imported from: chebi.owl

macrolide antibiotic
type: Class
subclass of: macrolide
definition: A macrocyclic lactone with a ring of twelve or more members which exhibits antibiotic activity.
imported from: chebi.owl

macrolide
type: Class
subclass of: polyketide
subclass of: macrocyclic lactone
definition: A macrocyclic lactone with a ring of twelve or more members derived from a polyketide.
imported from: chebi.owl

elemental molecule
type: Class
subclass of: molecule
subclass of: elemental molecular entity
definition: A molecule all atoms of which have the same atomic number.
imported from: chebi.owl

molecule
type: Class
subclass of: polyatomic entity
definition: Any polyatomic entity that is an electrically neutral entity consisting of more than one atom.
imported from: chebi.owl

monocarboxylic acid
type: Class
subclass of: carboxylic acid
definition: An oxoacid containing a single carboxy group.
imported from: chebi.owl

monohydroxybenzoic acid
type: Class
subclass of: hydroxybenzoic acid
definition: Any hydroxybenzoic acid having a single phenolic hydroxy substituent on the benzene ring.
imported from: chebi.owl

naphthalenes
type: Class
subclass of: benzenoid aromatic compound
subclass of: carbobicyclic compound
definition: Any benzenoid aromatic compound having a skeleton composed of two ortho-fused benzene rings.
imported from: chebi.owl

pyridinecarboxamide
type: Class
subclass of: pyridines
subclass of: carboxamide
definition: A member of the class of pyridines that is a substituted pyridine in which at least one of the substituents is a carboxamide or N-substituted caraboxamide group.
imported from: chebi.owl

organonitrogen heterocyclic antibiotic
type: Class
subclass of: heterocyclic antibiotic
subclass of: organonitrogen heterocyclic compound
imported from: chebi.owl

nonmetal atom
type: Class
subclass of: atom
imported from: chebi.owl

oleandomycins
type: Class
subclass of: macrolide
imported from: chebi.owl

organic heteromonocyclic compound
type: Class
subclass of: organic heterocyclic compound
subclass of: heteromonocyclic compound
imported from: chebi.owl

organic anion
type: Class
subclass of: anion
subclass of: organic ion
definition: Any organic ion with a net negative charge.
imported from: chebi.owl

ether
type: Class
subclass of: organooxygen compound
definition: An organooxygen compound with formula ROR, where R is not hydrogen.
imported from: chebi.owl

organic ion
type: Class
subclass of: ion
subclass of: organic molecular entity
imported from: chebi.owl

organic phosphate
type: Class
subclass of: organophosphorus compound
subclass of: phosphate
imported from: chebi.owl

organophosphorus compound
type: Class
subclass of: phosphorus molecular entity
subclass of: heteroorganic entity
definition: An organophosphorus compound is formally a compound containing at least one carbon-phosphorus bond, but the term is often extended to include esters and thioesters.
imported from: chebi.owl

oxide
type: Class
subclass of: oxygen molecular entity
subclass of: heteroatomic molecular entity
definition: An oxide is a chemical compound of oxygen with other chemical elements.
imported from: chebi.owl

oxime
type: Class
subclass of: organic molecular entity
subclass of: nitrogen molecular entity
definition: Compounds of structure R2C=NOH derived from condensation of aldehydes or ketones with hydroxylamine. Oximes from aldehydes may be called aldoximes; those from ketones may be called ketoximes.
imported from: chebi.owl

oxo carboxylic acid
type: Class
subclass of: carboxylic acid
definition: Any compound that has an aldehydic or ketonic group as well as a carboxylic acid group in the same molecule.
imported from: chebi.owl

oxygen molecular entity
type: Class
subclass of: chalcogen molecular entity
imported from: chebi.owl

organooxygen heterocyclic antibiotic
type: Class
subclass of: heterocyclic antibiotic
imported from: chebi.owl

penicillanic acids
type: Class
subclass of: carboxylic acid
subclass of: penams
imported from: chebi.owl

peptide antibiotic
type: Class
subclass of: peptide
definition: A chemically diverse class of peptides that exhibit antimicrobial properties.
imported from: chebi.owl

phenylpropanoid
type: Class
subclass of: organic aromatic compound
definition: Any organic aromatic compound with a structure based on a phenylpropane skeleton. The class includes naturally occurring phenylpropanoid esters, flavonoids, anthocyanins, coumarins and many small phenolic molecules as well as their semi-synthetic and synthetic analogues. Phenylpropanoids are also precursors of lignin.
imported from: chebi.owl

phosphate
type: Class
subclass of: phosphoric acid derivative
definition: Salts and esters of phosphoric and oligophosphoric acids and their chalcogen analogues. In inorganic chemistry, the term is also used to describe anionic coordination entities with phosphorus as central atom.
imported from: chebi.owl

phosphonic acids
type: Class
subclass of: phosphorus oxoacids and derivatives
definition: HP(=O)(OH)2 (phosphonic acid) and its P-substituted derivatives.
imported from: chebi.owl

phosphoric acid derivative
type: Class
subclass of: phosphorus oxoacid derivative
imported from: chebi.owl

phosphorus molecular entity
type: Class
subclass of: pnictogen molecular entity
imported from: chebi.owl

piperazines
type: Class
subclass of: organic heteromonocyclic compound
subclass of: organonitrogen heterocyclic compound
subclass of: antimicrobial resistance test drug
imported from: chebi.owl

piperidines
type: Class
subclass of: organic heteromonocyclic compound
subclass of: organonitrogen heterocyclic compound
imported from: chebi.owl

polyketide
type: Class
subclass of: organooxygen compound
definition: Natural and synthetic compounds containing alternating carbonyl and methylene groups ('beta-polyketones'), biogenetically derived from repeated condensation of acetyl coenzyme A (via malonyl coenzyme A), and usually the compounds derived from them by further condensations, etc. Considered by many to be synonymous with the less frequently used terms acetogenins and ketides.
imported from: chebi.owl

polyol
type: Class
subclass of: organic hydroxy compound
definition: A compound that contains two or more hydroxy groups.
imported from: chebi.owl

polyphenol
type: Class
subclass of: phenols
definition: Members of the class of phenols that contain 2 or more benzene rings each of which is substituted by at least one hydroxy group.
imported from: chebi.owl

proline derivative
type: Class
subclass of: amino acid derivative
definition: An amino acid derivative resulting from reaction of proline at the amino group or the carboxy group, or from the replacement of any hydrogen of proline by a heteroatom. The definition normally excludes peptides containing proline residues.
imported from: chebi.owl

amikacin
type: Class
subclass of: alpha-D-glucoside
subclass of: amino cyclitol glycoside
subclass of: carboxamide
subclass of: aminoglycoside
subclass of: second line or reserve tuberculosis drug
definition: An amino cyclitol glycoside that is kanamycin A acylated at the N-1 position by a 4-amino-2-hydroxybutyryl group.
alternative term: Am
alternative term: Amk
imported from: chebi.owl

purine nucleoside
type: Class
subclass of: purines
subclass of: nucleoside
imported from: chebi.owl

purine ribonucleoside
type: Class
subclass of: ribonucleoside
subclass of: purine nucleoside
definition: A ribonucleoside that has a purine moiety as the nucleobase (the R group in the illustration).
imported from: chebi.owl

purines
type: Class
subclass of: imidazopyrimidine
definition: A class of imidazopyrimidines that consists of purine and its substituted derivatives.
imported from: chebi.owl
has_alternative_id: CHEBI:13678

puromycins
type: Class
subclass of: adenosines
imported from: chebi.owl

pyridine alkaloid
type: Class
subclass of: alkaloid
subclass of: pyridines
imported from: chebi.owl

pyridines
type: Class
subclass of: organic heteromonocyclic compound
subclass of: organonitrogen heterocyclic compound
definition: Any organonitrogen heterocyclic compound based on a pyridine skeleton and its substituted derivatives.
imported from: chebi.owl

pyrroles
type: Class
subclass of: azole
definition: An azole that includes only one N atom and no other heteroatom as a part of the aromatic skeleton.
imported from: chebi.owl

quaternary nitrogen compound
type: Class
subclass of: organonitrogen compound
definition: A nitrogen molecular entity that is electronically neutral but which contains a quaternary nitrogen.
imported from: chebi.owl

quinolinemonocarboxylic acid
type: Class
subclass of: quinolines
subclass of: aromatic carboxylic acid
definition: Any aromatic carboxylic acid that contains a quinoline moiety that is substituted by one carboxy substituent.
imported from: chebi.owl

quinolines
type: Class
subclass of: organic aromatic compound
subclass of: organonitrogen heterocyclic compound
subclass of: antimicrobial resistance test drug
definition: A class of aromatic heterocyclic compounds each of which contains a benzene ring ortho fused to carbons 2 and 3 of a pyridine ring.
imported from: chebi.owl

rifamycins
type: Class
subclass of: ansamycin
subclass of: naphthofuran
imported from: chebi.owl

serine derivative
type: Class
subclass of: amino acid derivative
definition: An amino acid derivative resulting from reaction of serine at the amino group or the carboxy group, or from the replacement of any hydrogen of serine by a heteroatom. The definition normally excludes peptides containing serine residues.
imported from: chebi.owl

balsalazide
type: Class
subclass of: monohydroxybenzoic acid
definition: A monohydroxybenzoic acid consisting of 5-aminosalicylic acid (mesalazine) linked to 4-aminobenzoyl-beta-alanine via an azo bond.
imported from: chebi.owl

amoxicillin
type: Class
subclass of: penicillin allergen
subclass of: second line or reserve tuberculosis drug
definition: A penicillin in which the substituent at position 6 of the penam ring is a 2-amino-2-(4-hydroxyphenyl)acetamido group.
alternative term: Amx
imported from: chebi.owl
has_alternative_id: CHEBI:133770

steroid antibiotic
type: Class
subclass of: steroid
subclass of: carbocyclic antibiotic
imported from: chebi.owl

streptomycins
type: Class
subclass of: amino cyclitol glycoside
subclass of: aminoglycoside antibiotic
imported from: chebi.owl

sulfide
type: Class
subclass of: sulfur molecular entity
definition: Any sulfur molecular entity that involves either covalently bonded or anionic sulfur.
imported from: chebi.owl

sulfur molecular entity
type: Class
subclass of: chalcogen molecular entity
imported from: chebi.owl

tertiary alcohol
type: Class
subclass of: alcohol
definition: A tertiary alcohol is a compound in which a hydroxy group, -OH, is attached to a saturated carbon atom which has three other carbon atoms attached to it.
imported from: chebi.owl

tetracyclines
type: Class
subclass of: polyketide
definition: A subclass of polyketides having an octahydrotetracene-2-carboxamide skeleton, substituted with many hydroxy and other groups.
imported from: chebi.owl

oxolanes
type: Class
subclass of: organic heteromonocyclic compound
subclass of: oxacycle
definition: Any oxacycle having an oxolane (tetrahydrofuran) skeleton.
imported from: chebi.owl

thiophenes
type: Class
subclass of: organosulfur heterocyclic compound
definition: Compounds containing at least one thiophene ring.
imported from: chebi.owl

organic heterotricyclic compound
type: Class
subclass of: heterotricyclic compound
subclass of: organic heteropolycyclic compound
subclass of: organic tricyclic compound
definition: An organic tricyclic compound in which at least one of the rings of the tricyclic skeleton contains one or more heteroatoms.
imported from: chebi.owl

triol
type: Class
subclass of: polyol
definition: A chemical compound containing three hydroxy groups.
imported from: chebi.owl

organic heterobicyclic compound
type: Class
subclass of: heterobicyclic compound
subclass of: organic heteropolycyclic compound
imported from: chebi.owl

zwitterion
type: Class
subclass of: dipolar compound
definition: A neutral compound having formal unit electrical charges of opposite sign on non-adjacent atoms. Sometimes referred to as inner salts, dipolar ions (a misnomer).
imported from: chebi.owl

4-aminosalicylic acid
type: Class
subclass of: aminobenzoic acid
subclass of: phenols
subclass of: second line or reserve tuberculosis drug
definition: An aminobenzoic acid that is salicylic acid substituted by an amino group at position 4.
alternative term: PAS
imported from: chebi.owl
has_alternative_id: CHEBI:1789
has_alternative_id: CHEBI:20320
has_alternative_id: CHEBI:41152

chlortetracycline
type: Class
subclass of: tertiary alpha-hydroxy ketone
subclass of: tetracyclines
subclass of: monocarboxylic acid amide
subclass of: tertiary amino compound
subclass of: monochlorobenzenes
definition: A member of the class of tetracyclines with formula C22H23ClN2O8 isolated from Streptomyces aureofaciens.
imported from: chebi.owl
has_alternative_id: CHEBI:23164
has_alternative_id: CHEBI:3653

actinomycin D
type: Class
subclass of: actinomycin
imported from: chebi.owl
has_alternative_id: CHEBI:22218
has_alternative_id: CHEBI:2446

apramycin
type: Class
subclass of: organic heterobicyclic compound
subclass of: aminoglycoside
subclass of: 2-deoxystreptamine derivative
subclass of: antimicrobial resistance test drug
definition: An aminoglycoside that is 2-deoxystreptamine that is substituted on the oxygen at position 4 by an (8R)-2-amino-8-O-(4-amino-4-deoxy-alpha-D-glucopyranosyl)-2,3,7-trideoxy-7-(methylamino)-D-glycero-alpha-D-allo-octodialdo-1,5:8,4-dipyranos-1-yl) group.
imported from: chebi.owl
has_alternative_id: CHEBI:40708

beta-lactam antibiotic
type: Class
subclass of: organonitrogen heterocyclic antibiotic
subclass of: beta-lactam
definition: An organonitrogen heterocyclic antibiotic that contains a beta-lactam ring.
imported from: chebi.owl
has_alternative_id: CHEBI:10427
has_alternative_id: CHEBI:22844

vancomycin
type: Class
subclass of: glycopeptide
definition: A complex glycopeptide from Streptomyces orientalis. It inhibits a specific step in the synthesis of the peptidoglycan layer in the Gram-positive bacteria Staphylococcus aureus and Clostridium difficile.
imported from: chebi.owl
has_alternative_id: CHEBI:27276
has_alternative_id: CHEBI:49941
has_alternative_id: CHEBI:9931

rifampicin
type: Class
subclass of: rifamycins
subclass of: hydrazone
subclass of: N-iminopiperazine
subclass of: N-methylpiperazine
subclass of: cyclic ketal
subclass of: semisynthetic derivative
subclass of: GENEPIO_0002071
definition: A member of the class of rifamycins that is a a semisynthetic antibiotic derived from Amycolatopsis rifamycinica (previously known as Amycolatopsis mediterranei and Streptomyces mediterranei).
alternative term: Rif
imported from: chebi.owl
has_alternative_id: CHEBI:26577
has_alternative_id: CHEBI:45308
has_alternative_id: CHEBI:8858

loracarbef anion
type: Class
subclass of: carbacephem
definition: The conjugate base of loracarbef.
imported from: chebi.owl

novobiocin
type: Class
subclass of: carbamate ester
subclass of: ether
subclass of: monocarboxylic acid amide
subclass of: phenols
subclass of: hexoside
subclass of: hydroxycoumarin
subclass of: monosaccharide derivative
subclass of: antimicrobial resistance test drug
definition: A coumarin-derived antibiotic obtained from Streptomyces niveus.
imported from: chebi.owl
has_alternative_id: CHEBI:25597
has_alternative_id: CHEBI:44505
has_alternative_id: CHEBI:7644

phosphorus atom
type: Class
subclass of: nonmetal atom
subclass of: pnictogen
imported from: chebi.owl
has_alternative_id: CHEBI:26080
has_alternative_id: CHEBI:8168

tobramycin
type: Class
subclass of: amino cyclitol glycoside
definition: A amino cyclitol glycoside that is kanamycin B lacking the 3-hydroxy substituent from the 2,6-diaminoglucose ring.
imported from: chebi.owl
has_alternative_id: CHEBI:19849
has_alternative_id: CHEBI:45933
has_alternative_id: CHEBI:9610

bambermycin
type: Class
subclass of: glycophospholipid
definition: A glycophospholipid antibiotic compound with the lipid portion conjugated to a pentasaccharide fraction via a phosphate linkage.
imported from: chebi.owl
has_alternative_id: CHEBI:25360
has_alternative_id: CHEBI:5075

fosfomycin
type: Class
subclass of: phosphonic acids
subclass of: epoxide
definition: A phosphonic acid having an (R,S)-1,2-epoxypropyl group attached to phosphorus.
imported from: chebi.owl
has_alternative_id: CHEBI:24100
has_alternative_id: CHEBI:42503
has_alternative_id: CHEBI:8159

amino sugar
type: Class
subclass of: carbohydrate derivative
definition: Any sugar having one or more alcoholic hydroxy groups replaced by substituted or unsubstituted amino groups.
imported from: chebi.owl
has_alternative_id: CHEBI:22481
has_alternative_id: CHEBI:22530
has_alternative_id: CHEBI:2662

ampicillin
type: Class
subclass of: penicillin allergen
definition: A penicillin in which the substituent at position 6 of the penam ring is a 2-amino-2-phenylacetamido group.
imported from: chebi.owl
has_alternative_id: CHEBI:22536
has_alternative_id: CHEBI:2683
has_alternative_id: CHEBI:40648
has_alternative_id: CHEBI:45042

ceftriaxone
type: Class
subclass of: cephalosporin
subclass of: oxime O-ether
subclass of: 1,3-thiazoles
subclass of: 1,2,4-triazines
definition: A third-generation cephalosporin compound having 2-(2-amino-1,3-thiazol-4-yl)-2-(methoxyimino)acetylamino and [(2-methyl-5,6-dioxo-1,2,5,6-tetrahydro-1,2,4-triazin-3-yl)sulfanyl]methyl side-groups.
imported from: chebi.owl
has_alternative_id: CHEBI:23059
has_alternative_id: CHEBI:3513
has_alternative_id: CHEBI:446214

fusidic acid
type: Class
subclass of: 11alpha-hydroxy steroid
subclass of: steroid antibiotic
subclass of: sterol ester
subclass of: 3alpha-hydroxy steroid
subclass of: steroid acid
subclass of: alpha,beta-unsaturated monocarboxylic acid
definition: A steroid antibiotic that is isolated from the fermentation broth of Fusidium coccineum.
imported from: chebi.owl
has_alternative_id: CHEBI:24133
has_alternative_id: CHEBI:42742
has_alternative_id: CHEBI:5201

carboxylic acid anion
type: Class
subclass of: organic anion
subclass of: oxoanion
definition: The conjugate base formed when the carboxy group of a carboxylic acid is deprotonated.
imported from: chebi.owl
has_alternative_id: CHEBI:13626
has_alternative_id: CHEBI:13945
has_alternative_id: CHEBI:23026
has_alternative_id: CHEBI:58657

monocarboxylic acid amide
type: Class
subclass of: carboxamide
definition: A carboxamide derived from a monocarboxylic acid.
imported from: chebi.owl
has_alternative_id: CHEBI:13211
has_alternative_id: CHEBI:22207
has_alternative_id: CHEBI:25383
has_alternative_id: CHEBI:6977

azithromycin
type: Class
subclass of: macrolide antibiotic
definition: A macrolide antibiotic useful for the treatment of bacterial infections.
imported from: chebi.owl
has_alternative_id: CHEBI:46596

chloroeremomycin
type: Class
subclass of: glycopeptide
subclass of: disaccharide derivative
definition: A complex glycopeptide antibiotic that is isolated from Amycolatopsis orientalis.
imported from: chebi.owl

azlocillin
type: Class
subclass of: semisynthetic derivative
subclass of: penicillin allergen
definition: A semisynthetic penicillin having a 6beta-{(2R)-2-[(2-oxoimidazolidine-1-carbonyl)amino]-2-phenylacetyl}amino side-group. It is an antibiotic used in treating infections caused by Pseudomonas aeruginosa, Escherichia coli and Haemophilus influenzae.
imported from: chebi.owl
has_alternative_id: CHEBI:63225

GE2270A
type: Class
subclass of: lactam
subclass of: azamacrocycle
imported from: chebi.owl
has_alternative_id: CHEBI:42746

methymycin
type: Class
subclass of: macrolide antibiotic
subclass of: enone
subclass of: monosaccharide derivative
definition: A twelve-membered macrolide antibiotic that is biosynthesised by Streptomyces venezuelae.
imported from: chebi.owl

narbomycin
type: Class
subclass of: macrolide antibiotic
subclass of: enone
subclass of: monosaccharide derivative
definition: A macrolide antibiotic that is narbonolide having a 3,4,6-trideoxy-3-(dimethylamino)-beta-D-xylo-hexopyranosyl residue attached at position 6. It is biosynthesised by Streptomyces venezuelae.
imported from: chebi.owl
has_alternative_id: CHEBI:44624

pikromycin
type: Class
subclass of: macrolide antibiotic
subclass of: enone
subclass of: monosaccharide derivative
definition: A macrolide antibiotic that is biosynthesised by Streptomyces venezuelae.
imported from: chebi.owl

Pulvomycin
type: Class
subclass of: macrolide
imported from: chebi.owl

rifamycin SV
type: Class
subclass of: polyphenol
subclass of: rifamycins
subclass of: organic heterotetracyclic compound
subclass of: acetate ester
subclass of: cyclic ketal
subclass of: antimicrobial resistance test drug
definition: A member of the class of rifamycins that exhibits antibiotic and antitubercular properties.
imported from: chebi.owl

telithromycin
type: Class
subclass of: amino sugar
imported from: chebi.owl
has_alternative_id: CHEBI:46029

thiostrepton
type: Class
subclass of: heterodetic cyclic peptide
definition: A heterodetic cyclic peptide, in which the cyclisation step involves a formal lactonisation between the carboxy group of a quinaldic acid-based residue and a secondary alcohol. An antibiotic that inhibits bacterial protein synthesis. Also acts as an antitumor agent.
imported from: chebi.owl

Valnemulin
type: Class
subclass of: carboxylic ester
subclass of: carbotricyclic compound
subclass of: cyclic ketone
imported from: chebi.owl

alcohol
type: Class
subclass of: organic hydroxy compound
definition: A compound in which a hydroxy group, -OH, is attached to a saturated carbon atom.
imported from: chebi.owl
has_alternative_id: CHEBI:13804
has_alternative_id: CHEBI:22288
has_alternative_id: CHEBI:2553

bleomycin A2
type: Class
subclass of: bleomycin
imported from: chebi.owl
has_alternative_id: CHEBI:165316
has_alternative_id: CHEBI:357107
has_alternative_id: CHEBI:41102
has_alternative_id: CHEBI:653800

ethylenediamine derivative
type: Class
subclass of: organic amino compound
definition: Any organic amino compound that is a derivative of ethylenediamine.
imported from: chebi.owl

josamycin
type: Class
subclass of: aldehyde
subclass of: glycoside
subclass of: macrolide antibiotic
subclass of: tertiary alcohol
subclass of: acetate ester
subclass of: tertiary amino compound
subclass of: disaccharide derivative
definition: A macrolide antibiotic produced by certain strains of Streptomyces narbonensis var. josamyceticus.
imported from: chebi.owl

leucomycin V
type: Class
subclass of: leucomycin
subclass of: macrolide antibiotic
definition: A macrolide antibiotic produced by Streptomyces kitasatoensis, showing activity against a wide spectrum of pathogens.
imported from: chebi.owl

fleroxacin
type: Class
subclass of: monocarboxylic acid
subclass of: quinolines
subclass of: difluorobenzene
subclass of: N-alkylpiperazine
subclass of: fluoroquinolone antibiotic
definition: A fluoroquinolone antibiotic that is 4-oxo-1,4-dihydroquinoline which is substituted at positions 1, 3, 6, 7 and 8 by 2-fluoroethyl, carboxy, fluoro, 4-methylpiperazin-1-yl and fluoro groups, respectively. It is active against many Gram-positive and Gram-negative bacteria.
imported from: chebi.owl

Prothionamide
type: Class
subclass of: pyridines
subclass of: second line or reserve tuberculosis drug
alternative term: Pto
imported from: chebi.owl
has_alternative_id: CHEBI:93717

thiamphenicol
type: Class
subclass of: monocarboxylic acid amide
subclass of: sulfone
imported from: chebi.owl

calcium sulfate dihydrate
type: Class
subclass of: calcium salt
subclass of: hydrate
imported from: chebi.owl

epoxide
type: Class
subclass of: cyclic ether
definition: Any cyclic ether in which the oxygen atom forms part of a 3-membered ring.
imported from: chebi.owl
has_alternative_id: CHEBI:13828
has_alternative_id: CHEBI:23930
has_alternative_id: CHEBI:4812

amide
type: Class
subclass of: nitrogen molecular entity
definition: An amide is a derivative of an oxoacid RkE(=O)l(OH)m (l =/= 0) in which an acidic hydroxy group has been replaced by an amino or substituted amino group.
imported from: chebi.owl
has_alternative_id: CHEBI:22473
has_alternative_id: CHEBI:2633

oxoacid derivative
type: Class
subclass of: heteroatomic molecular entity
imported from: chebi.owl

organic fundamental parent
type: Class
subclass of: organic hydride
subclass of: organic molecular entity
definition: An organic fundamental parent is a structure used as a basis for substitutive names in organic nomenclature, containing, in addition to one or more hydrogen atoms, a single atom of an element, a number of atoms (alike or different) linked together to form an unbranched chain, a monocyclic or polycyclic ring system, or a ring assembly or ring/chain system.
imported from: chebi.owl

atom
type: Class
subclass of: chemical entity
definition: A chemical entity constituting the smallest component of an element having the chemical properties of the element.
imported from: chebi.owl
has_alternative_id: CHEBI:22671
has_alternative_id: CHEBI:23907

primary amide
type: Class
subclass of: amide
definition: A derivative of an oxoacid RkE(=O)l(OH)m (l =/= 0) in which an acidic hydroxy group has been replaced by an amino or substituted amino group.
imported from: chebi.owl

secondary amide
type: Class
subclass of: amide
definition: A derivative of two oxoacids RkE(=O)l(OH)m (l =/= 0) in which two acyl groups are attached to the amino or substituted amino group.
imported from: chebi.owl

elemental molecular entity
type: Class
subclass of: molecular entity
definition: A molecular entity all atoms of which have the same atomic number.
imported from: chebi.owl

organosulfur compound
type: Class
subclass of: sulfur molecular entity
subclass of: organochalcogen compound
definition: An organosulfur compound is a compound containing at least one carbon-sulfur bond.
imported from: chebi.owl
has_alternative_id: CHEBI:23010
has_alternative_id: CHEBI:25714

elemental oxygen
type: Class
subclass of: inorganic molecular entity
subclass of: oxygen molecular entity
subclass of: elemental molecular entity
imported from: chebi.owl

diatomic oxygen
type: Class
subclass of: elemental oxygen
imported from: chebi.owl

polyatomic anion
type: Class
subclass of: anion
subclass of: polyatomic ion
definition: An anion consisting of more than one atom.
imported from: chebi.owl

antimicrobial agent
type: Class
subclass of: biological role
definition: A substance that kills or slows the growth of microorganisms, including bacteria, viruses, fungi and protozoans.
imported from: chebi.owl
has_alternative_id: CHEBI:22582

heteroorganic entity
type: Class
subclass of: organic molecular entity
definition: A heteroorganic entity is an organic molecular entity in which carbon atoms or organic groups are bonded directly to one or more heteroatoms.
imported from: chebi.owl

food
type: Class
subclass of: physiological role
user interface label: food role
definition: A physiological role played by any substance of either plant, animal or artificial origin which contains essential body nutrients that can be ingested by an organism to provide energy, promote growth, and maintain the processes of life.
imported from: chebi.owl

alkaline earth molecular entity
type: Class
subclass of: s-block molecular entity
definition: An alkaline earth molecular entity is a molecular entity containing one or more atoms of an alkaline earth metal.
imported from: chebi.owl

pnictogen
type: Class
subclass of: p-block element atom
definition: Any p-block element atom that is in group 15 of the periodic table: nitrogen, phosphorus, arsenic, antimony and bismuth.
imported from: chebi.owl

pnictogen molecular entity
type: Class
subclass of: p-block molecular entity
definition: A p-block molecular entity containing any pnictogen.
imported from: chebi.owl

chalcogen molecular entity
type: Class
subclass of: p-block molecular entity
definition: Any p-block molecular entity containing a chalcogen.
imported from: chebi.owl

carboxylic ester
type: Class
subclass of: ester
subclass of: carbonyl compound
definition: An ester of a carboxylic acid, R(1)C(=O)OR(2), where R(1) = H or organyl and R(2) = organyl.
imported from: chebi.owl
has_alternative_id: CHEBI:13204
has_alternative_id: CHEBI:23028
has_alternative_id: CHEBI:3408

main group element atom
type: Class
subclass of: atom
definition: An atom belonging to one of the main groups (found in the s- and p- blocks) of the periodic table.
imported from: chebi.owl

organoarsenic compound
type: Class
subclass of: organometalloidal compound
subclass of: arsenic molecular entity
imported from: chebi.owl

sulfur oxoacid derivative
type: Class
subclass of: sulfur molecular entity
subclass of: oxoacid derivative
imported from: chebi.owl

nitrogen oxoanion
type: Class
subclass of: pnictogen oxoanion
subclass of: nitrogen molecular entity
imported from: chebi.owl

pnictogen oxoanion
type: Class
subclass of: pnictogen molecular entity
subclass of: oxoanion
imported from: chebi.owl

sulfonic acid derivative
type: Class
subclass of: sulfur oxoacid derivative
imported from: chebi.owl

p-block element atom
type: Class
subclass of: main group element atom
definition: Any main group element atom belonging to the p-block of the periodic table.
imported from: chebi.owl

glycolipid
type: Class
subclass of: liposaccharide
definition: Any member of class of 1,2-di-O-acylglycerols joined at oxygen 3 by a glycosidic linkage to a carbohydrate part (usually a mono-, di- or tri-saccharide). Some substances classified as bacterial glycolipids have the sugar part acylated by one or more fatty acids and the glycerol part may be absent.
imported from: chebi.owl
has_alternative_id: CHEBI:24393
has_alternative_id: CHEBI:5476

carboxylic acid
type: Class
subclass of: carbon oxoacid
subclass of: carbonyl compound
subclass of: organic acid
definition: A carbon oxoacid acid carrying at least one -C(=O)OH group and having the structure RC(=O)OH, where R is any any monovalent functional group. Carboxylic acids are the most common type of organic acid.
imported from: chebi.owl
has_alternative_id: CHEBI:13428
has_alternative_id: CHEBI:13627
has_alternative_id: CHEBI:23027

main group molecular entity
type: Class
subclass of: molecular entity
definition: A molecular entity containing one or more atoms from any of groups 1, 2, 13, 14, 15, 16, 17, and 18 of the periodic table.
imported from: chebi.owl

carbon group molecular entity
type: Class
subclass of: p-block molecular entity
imported from: chebi.owl

cyclic compound
type: Class
subclass of: molecule
definition: Any molecule that consists of a series of atoms joined together to form a ring.
imported from: chebi.owl

homocyclic compound
type: Class
subclass of: cyclic compound
definition: A cyclic compound having as ring members atoms of the same element only.
imported from: chebi.owl

carbocyclic compound
type: Class
subclass of: homocyclic compound
subclass of: organic cyclic compound
definition: A homocyclic compound in which all of the ring members are carbon atoms.
imported from: chebi.owl

hydrogen molecular entity
type: Class
subclass of: s-block molecular entity
imported from: chebi.owl

polycyclic compound
type: Class
subclass of: cyclic compound
imported from: chebi.owl

bicyclic compound
type: Class
subclass of: cyclic compound
definition: A molecule that features two fused rings.
imported from: chebi.owl

aromatic compound
type: Class
subclass of: cyclic compound
definition: A cyclically conjugated molecular entity with a stability (due to delocalization) significantly greater than that of a hypothetical localized structure (e.g. Kekule structure) is said to possess aromatic character.
imported from: chebi.owl

organic aromatic compound
type: Class
subclass of: aromatic compound
subclass of: organic cyclic compound
imported from: chebi.owl

monocyclic compound
type: Class
subclass of: cyclic compound
imported from: chebi.owl

heteromonocyclic compound
type: Class
subclass of: monocyclic compound
subclass of: heterocyclic compound
imported from: chebi.owl

heteropolycyclic compound
type: Class
subclass of: polycyclic compound
subclass of: heterocyclic compound
definition: A polycyclic compound in which at least one of the rings contains at least one non-carbon atom.
imported from: chebi.owl

heterobicyclic compound
type: Class
subclass of: bicyclic compound
subclass of: heterocyclic compound
definition: A bicyclic compound in which at least one of the rings contains at least one skeletal heteroatom.
imported from: chebi.owl

s-block molecular entity
type: Class
subclass of: main group molecular entity
definition: An s-block molecular entity is a molecular entity containing one or more atoms of an s-block element.
imported from: chebi.owl

p-block molecular entity
type: Class
subclass of: main group molecular entity
definition: A main group molecular entity that contains one or more atoms of a p-block element.
imported from: chebi.owl

hydrides
type: Class
subclass of: hydrogen molecular entity
subclass of: heteroatomic molecular entity
definition: Hydrides are chemical compounds of hydrogen with other chemical elements.
imported from: chebi.owl

biomacromolecule
type: Class
subclass of: macromolecule
subclass of: organic molecular entity
definition: A macromolecule formed by a living organism.
imported from: chebi.owl

information biomacromolecule
type: Class
subclass of: biomacromolecule
imported from: chebi.owl

nucleic acid
type: Class
subclass of: polynucleotide
definition: A macromolecule made up of nucleotide units and hydrolysable into certain pyrimidine or purine bases (usually adenine, cytosine, guanine, thymine, uracil), D-ribose or 2-deoxy-D-ribose and phosphoric acid.
imported from: chebi.owl

ribonucleic acid
type: Class
subclass of: nucleic acid
definition: High molecular weight, linear polymers, composed of nucleotides containing ribose and linked by phosphodiester bonds; RNA is central to the synthesis of proteins.
imported from: chebi.owl

alpha-amino acid
type: Class
subclass of: amino acid
definition: An amino acid in which the amino group is located on the carbon atom at the position alpha to the carboxy group.
imported from: chebi.owl
has_alternative_id: CHEBI:10208
has_alternative_id: CHEBI:13779
has_alternative_id: CHEBI:22442
has_alternative_id: CHEBI:2642

amino acid
type: Class
subclass of: carboxylic acid
subclass of: organic amino compound
definition: A carboxylic acid containing one or more amino groups.
imported from: chebi.owl
has_alternative_id: CHEBI:13815
has_alternative_id: CHEBI:22477

capreomycin
type: Class
subclass of: peptide antibiotic
subclass of: second line or reserve tuberculosis drug
alternative term: CAP
alternative term: Cm
imported from: chebi.owl

organic hydroxy compound
type: Class
subclass of: hydroxides
subclass of: organic molecular entity
definition: An organic compound having at least one hydroxy group attached to a carbon atom.
imported from: chebi.owl
has_alternative_id: CHEBI:64710

organic cyclic compound
type: Class
subclass of: cyclic compound
subclass of: organic molecule
definition: Any organic molecule that consists of atoms connected in the form of a ring.
imported from: chebi.owl

heteroarene
type: Class
subclass of: organic heterocyclic compound
subclass of: organic aromatic compound
definition: A heterocyclic compound formally derived from an arene by replacement of one or more methine (-C=) and/or vinylene (-CH=CH-) groups by trivalent or divalent heteroatoms, respectively, in such a way as to maintain the continuous pi-electron system characteristic of aromatic systems and a number of out-of-plane pi-electrons corresponding to the Hueckel rule (4n+2).
imported from: chebi.owl

benzenoid aromatic compound
type: Class
subclass of: carbocyclic compound
subclass of: organic aromatic compound
imported from: chebi.owl

nucleoside
type: Class
subclass of: N-glycosyl compound
subclass of: oxolanes
subclass of: nucleobase-containing molecular entity
definition: An N-glycosyl compound that has both a nucleobase, normally adenine, guanine, xanthine, thymine, cytosine or uracil, and either a ribose or deoxyribose as functional parents.
imported from: chebi.owl
has_alternative_id: CHEBI:13661
has_alternative_id: CHEBI:25611
has_alternative_id: CHEBI:7647

macromolecule
type: Class
subclass of: polyatomic entity
definition: A macromolecule is a molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass.
imported from: chebi.owl

phenols
type: Class
subclass of: organic aromatic compound
subclass of: organic hydroxy compound
definition: Organic aromatic compounds having one or more hydroxy groups attached to a benzene or other arene ring.
imported from: chebi.owl
has_alternative_id: CHEBI:13664
has_alternative_id: CHEBI:13825
has_alternative_id: CHEBI:25969
has_alternative_id: CHEBI:2857

aromatic amino acid
type: Class
subclass of: organic aromatic compound
subclass of: amino acid
definition: An amino acid whose structure includes an aromatic ring.
imported from: chebi.owl
has_alternative_id: CHEBI:13820
has_alternative_id: CHEBI:22623
has_alternative_id: CHEBI:2835

aromatic carboxylic acid
type: Class
subclass of: carboxylic acid
subclass of: organic aromatic compound
definition: Any carboxylic acid in which the carboxy group is directly bonded to an aromatic ring.
imported from: chebi.owl
has_alternative_id: CHEBI:13817
has_alternative_id: CHEBI:13821
has_alternative_id: CHEBI:2830

aromatic amine
type: Class
subclass of: organic aromatic compound
subclass of: organic amino compound
definition: An amino compound in which the amino group is linked directly to an aromatic system.
imported from: chebi.owl
has_alternative_id: CHEBI:13827
has_alternative_id: CHEBI:22622
has_alternative_id: CHEBI:22646
has_alternative_id: CHEBI:2834
has_alternative_id: CHEBI:2863

carbenicillin
type: Class
subclass of: penicillin allergen
definition: A penicillin antibiotic having a 6beta-2-carboxy-2-phenylacetamido side-chain.
imported from: chebi.owl

halide salt
type: Class
subclass of: salt
subclass of: halide
imported from: chebi.owl

cefaclor
type: Class
subclass of: cephalosporin
definition: A cephalosporin bearing chloro and (R)-2-amino-2-phenylacetamido groups at positions 3 and 7, respectively, of the cephem skeleton.
imported from: chebi.owl
has_alternative_id: CHEBI:472656

cefadroxil
type: Class
subclass of: cephalosporin
definition: A cephalosporin bearing methyl and (2R)-2-amino-2-(4-hydroxyphenyl)acetamido groups at positions 3 and 7, respectively, of the cephem skeleton.
imported from: chebi.owl

cefamandole
type: Class
subclass of: cephalosporin
subclass of: semisynthetic derivative
definition: A cephalosporin compound having (R)-mandelamido and N-methylthiotetrazole side-groups.
imported from: chebi.owl

cefdinir
type: Class
subclass of: cephalosporin
subclass of: ketoxime
definition: A cephalosporin compound having 7beta-2-(2-amino-thiazol-4-yl)-2-[(Z)-hydroxyimino]-acetylamino- and 3-vinyl side groups.
imported from: chebi.owl
has_alternative_id: CHEBI:184624

cefmetazole
type: Class
subclass of: cephalosporin
definition: A second-generation cephalosporin antibiotic having N(1)-methyltetrazol-5-ylthiomethyl, {[(cyanomethyl)sulfanyl]acetyl}amino and methoxy side-groups at positions 3, 7beta and 7alpha respectively of the parent cephem bicyclic structure.
imported from: chebi.owl

cefonicid
type: Class
subclass of: cephalosporin
definition: A cephalosporin bearing {[1-(sulfomethyl)-1H-tetrazol-5-yl]sulfanyl}methyl and (R)-2-hydroxy-2-phenylacetamido groups at positions 3 and 7, respectively, of the cephem skeleton.
imported from: chebi.owl

cefoperazone
type: Class
subclass of: cephalosporin
definition: A semi-synthetic parenteral cephalosporin with a tetrazolyl moiety that confers beta-lactamase resistance.
imported from: chebi.owl
has_alternative_id: CHEBI:258120

teicoplanin A2
type: Class
subclass of: acetamides
subclass of: glycopeptide
subclass of: polyphenol
subclass of: aromatic ether
subclass of: macrocycle
subclass of: monochlorobenzenes
definition: Any of the glycopeptides whose structure consists of teicoplanin A3-1 in which the hydroxy group of the di(aryloxy)-substituted phenol moiety has been converted to the corresponding 2-acylamino-2-deoxy-beta-D-glucoside. Members of the class differ only in the nature of the acyl group.
imported from: chebi.owl

teicoplanin A2-3
type: Class
subclass of: teicoplanin A2
definition: A teicoplanin A2 that has decanoyl as the variable N-acyl group.
imported from: chebi.owl

cefpodoxime
type: Class
subclass of: cephalosporin
subclass of: carboxylic acid
definition: A third-generation cephalosporin antibiotic with methoxymethyl and (2Z)-2-(2-amino-1,3-thiazol-4-yl)-2-(methoxyimino)acetamino substituents at positions 3 and 7, respectively, of the cephem skeleton. Given by mouth as its proxetil ester prodrug, it is used to treat acute otitis media, pharyngitis, and sinusitis.
imported from: chebi.owl
has_alternative_id: CHEBI:606443

cefprozil
type: Class
subclass of: cephalosporin
subclass of: semisynthetic derivative
definition: A semisynthetic, second-generation cephalosporin, with prop-1-enyl and (R)-2-amino-2-(4-hydroxyphenyl)acetamido groups at positions 3 and 7, respectively, of the cephem skeleton. It is used to treat bronchitis as well as ear, skin and other bacterial infections.
imported from: chebi.owl

ceftazidime
type: Class
subclass of: cephalosporin
subclass of: oxime O-ether
definition: A third-generation cephalosporin antibiotic bearing pyridinium-1-ylmethyl and {[(2Z)-2-(2-amino-1,3-thiazol-4-yl)-2-{[(2-carboxypropan-2-yl)oxy]imino}acetamido groups at positions 3 and 7, respectively, of the cephem skeleton.
imported from: chebi.owl

ceftibuten
type: Class
subclass of: cephalosporin
subclass of: dicarboxylic acid
definition: A third-generation cephalosporin antibiotic with a [(2Z)-2-(2-amino-1,3-thiazol-4-yl)-4-carboxybut-2-enoyl]amino substituent at the 7 position of the cephem skeleton. An orally-administered agent, ceftibuten is used as the dihydrate to treat urinary-tract and respiratory-tract infections.
imported from: chebi.owl
has_alternative_id: CHEBI:554578

calcium salt
type: Class
subclass of: calcium molecular entity
subclass of: alkaline earth salt
imported from: chebi.owl

cyclodepsipeptide
type: Class
subclass of: depsipeptide
subclass of: lactone
definition: A depsipeptide in which the amino and hydroxy carboxylic acid residues are connected in a ring.
imported from: chebi.owl

S-glycosyl compound
type: Class
subclass of: monothioacetal
subclass of: glycosyl compound
subclass of: thiosugar
definition: A glycosyl compound arising formally from the elimination of water from a glycosidic hydroxy group and a S atom bound to a carbon atom, thus creating a C-S bond.
imported from: chebi.owl
has_alternative_id: CHEBI:22048
has_alternative_id: CHEBI:33577

onium betaine
type: Class
subclass of: zwitterion
definition: Neutral molecules having charge-separated forms with an onium atom which bears no hydrogen atoms and that is not adjacent to the anionic atom.
imported from: chebi.owl

iminium betaine
type: Class
subclass of: quaternary nitrogen compound
subclass of: onium betaine
imported from: chebi.owl

carbopolycyclic compound
type: Class
subclass of: carbocyclic compound
subclass of: homopolycyclic compound
definition: A polyclic compound in which all of the ring members are carbon atoms.
imported from: chebi.owl

homopolycyclic compound
type: Class
subclass of: homocyclic compound
subclass of: polycyclic compound
imported from: chebi.owl

hexoside
type: Class
subclass of: glycoside
imported from: chebi.owl

cephalexin
type: Class
subclass of: cephalosporin
subclass of: semisynthetic derivative
subclass of: beta-lactam antibiotic allergen
definition: A semisynthetic first-generation cephalosporin antibiotic having methyl and beta-(2R)-2-amino-2-phenylacetamido groups at the 3- and 7- of the cephem skeleton, respectively. It is effective against both Gram-negative and Gram-positive organisms, and is used for treatment of infections of the skin, respiratory tract and urinary tract.
imported from: chebi.owl

steroid
type: Class
subclass of: lipid
subclass of: organic polycyclic compound
definition: Any of naturally occurring compounds and synthetic analogues, based on the cyclopenta[a]phenanthrene carbon skeleton, partially or completely hydrogenated; there are usually methyl groups at C-10 and C-13, and often an alkyl group at C-17. By extension, one or more bond scissions, ring expansions and/or ring contractions of the skeleton may have occurred. Natural steroids are derived biogenetically from squalene which is a triterpene.
imported from: chebi.owl
has_alternative_id: CHEBI:13687
has_alternative_id: CHEBI:26768
has_alternative_id: CHEBI:9263

hydroxy steroid
type: Class
subclass of: organic hydroxy compound
subclass of: steroid
imported from: chebi.owl
has_alternative_id: CHEBI:24748
has_alternative_id: CHEBI:5814

organonitrogen compound
type: Class
subclass of: heteroorganic entity
subclass of: nitrogen molecular entity
definition: Any heteroorganic entity containing at least one carbon-nitrogen bond.
imported from: chebi.owl

sulfonamide
type: Class
subclass of: primary amide
subclass of: organosulfur compound
subclass of: sulfonic acid derivative
definition: An amide of a sulfonic acid RS(=O)2NR'2.
imported from: chebi.owl

hydrazide
type: Class
subclass of: nitrogen molecular entity
definition: Compounds derived from oxoacids RkE(=O)l(OH)m (l =/= 0) by replacing -OH by -NRNR2 (R groups are commonly H). (IUPAC).
imported from: chebi.owl

carbohydrazide
type: Class
subclass of: organonitrogen compound
subclass of: hydrazide
definition: A hydrazide consisting of hydrazine carrying one or more carboacyl groups.
imported from: chebi.owl

oxoanion
type: Class
subclass of: oxide
subclass of: polyatomic anion
definition: An oxoanion is an anion derived from an oxoacid by loss of hydron(s) bound to oxygen.
imported from: chebi.owl
has_alternative_id: CHEBI:33274
has_alternative_id: CHEBI:33436

D-glucoside
type: Class
subclass of: glucoside
definition: Any glucoside in which the glycoside group is derived from D-glucose.
imported from: chebi.owl
has_alternative_id: CHEBI:21009
has_alternative_id: CHEBI:4173

cephradine
type: Class
subclass of: cephalosporin
subclass of: beta-lactam antibiotic allergen
definition: A first-generation cephalosporin antibiotic with a methyl substituent at position 3, and a (2R)-2-amino-2-cyclohexa-1,4-dien-1-ylacetamido substituent at position 7, of the cephem skeleton.
imported from: chebi.owl

fluorobenzenes
type: Class
subclass of: benzenes
subclass of: organofluorine compound
definition: Any fluoroarene that is a benzene or a substituted benzene carrying at least one fluoro group.
imported from: chebi.owl

addition compound
type: Class
subclass of: heteroatomic molecular entity
definition: An addition compound contains two or more simpler compounds that can be packed in a definite ratio into a crystal. The term covers donor-acceptor complexes (adducts) and a variety of lattice compounds.
imported from: chebi.owl

hydrate
type: Class
subclass of: addition compound
definition: An addition compound that contains water in weak chemical combination with another compound.
imported from: chebi.owl

natural product fundamental parent
type: Class
subclass of: organic fundamental parent
imported from: chebi.owl

cefotiam
type: Class
subclass of: cephalosporin
subclass of: semisynthetic derivative
subclass of: beta-lactam antibiotic allergen
definition: A cephalosporin with ({1-[2-(dimethylamino)ethyl]-1H-tetrazol-5-yl}sulfanyl)methyl and (2-amino-1,3-thiazol-4-yl)acetamido substituents at positions 3 and 7, respectively, of the cephem skeleton. A third generation beta-lactam cephalosporin antibiotic, it is active against a broad spectrum of both Gram positive and Gram negative bacteria.
imported from: chebi.owl

heterocyclic organic fundamental parent
type: Class
subclass of: organic fundamental parent
imported from: chebi.owl

mancude ring
type: Class
subclass of: molecular entity
definition: Any molecular entity that consists of a ring having (formally) the maximum number of noncumulative double bonds.
imported from: chebi.owl

mancude organic heterocyclic parent
type: Class
subclass of: heterocyclic organic fundamental parent
subclass of: organic mancude parent
imported from: chebi.owl

organic mancude parent
type: Class
subclass of: organic fundamental parent
subclass of: mancude ring
imported from: chebi.owl

carbon oxoacid
type: Class
subclass of: oxoacid
subclass of: organooxygen compound
imported from: chebi.owl

aromatic ether
type: Class
subclass of: ether
subclass of: organic aromatic compound
definition: Any ether in which the oxygen is attached to at least one aryl substituent.
imported from: chebi.owl

beta-lactam
type: Class
subclass of: lactam
definition: A lactam in which the amide bond is contained within a four-membered ring, which includes the amide nitrogen and the carbonyl carbon.
imported from: chebi.owl
has_alternative_id: CHEBI:10426
has_alternative_id: CHEBI:13203
has_alternative_id: CHEBI:22845

secondary alcohol
type: Class
subclass of: alcohol
definition: A secondary alcohol is a compound in which a hydroxy group, -OH, is attached to a saturated carbon atom which has two other carbon atoms attached to it.
imported from: chebi.owl
has_alternative_id: CHEBI:13425
has_alternative_id: CHEBI:13686
has_alternative_id: CHEBI:26617
has_alternative_id: CHEBI:58662
has_alternative_id: CHEBI:8741
has_alternative_id: CHEBI:9077

tetrazoles
type: Class
subclass of: azole
definition: An azole in which the five-membered heterocyclic aromatic skeleton contains four N atoms and one C atom.
imported from: chebi.owl

dicarboxylic acid
type: Class
subclass of: dicarboxylic acids and O-substituted derivatives
subclass of: carboxylic acid
definition: Any carboxylic acid containing two carboxy groups.
imported from: chebi.owl
has_alternative_id: CHEBI:23692
has_alternative_id: CHEBI:36172
has_alternative_id: CHEBI:4501

ester
type: Class
subclass of: organooxygen compound
definition: A compound formally derived from an oxoacid RkE(=O)l(OH)m (l > 0) and an alcohol, phenol, heteroarenol, or enol by linking with formal loss of water from an acidic hydroxy group of the former and a hydroxy group of the latter.
imported from: chebi.owl
has_alternative_id: CHEBI:23960
has_alternative_id: CHEBI:4859

nitro compound
type: Class
subclass of: nitrogen molecular entity
definition: A compound having a nitro group, -NO2 (free valence on nitrogen), which may be attached to carbon, nitrogen (as in nitramines), or oxygen (as in nitrates), among other elements (in the absence of specification, C-nitro compounds are usually implied).
imported from: chebi.owl

C-nitro compound
type: Class
subclass of: nitro compound
subclass of: organic molecule
definition: A nitro compound having the nitro group (-NO2) attached to a carbon atom.
imported from: chebi.owl

triazoles
type: Class
subclass of: azole
definition: An azole in which the five-membered heterocyclic aromatic skeleton contains three N atoms and two C atoms.
imported from: chebi.owl

liposaccharide
type: Class
subclass of: lipid
subclass of: carbohydrate derivative
imported from: chebi.owl

monocarboxylic acid anion
type: Class
subclass of: carboxylic acid anion
definition: A carboxylic acid anion formed when the carboxy group of a monocarboxylic acid is deprotonated.
imported from: chebi.owl
has_alternative_id: CHEBI:13657
has_alternative_id: CHEBI:25382
has_alternative_id: CHEBI:3407

oxazole
type: Class
subclass of: oxacycle
subclass of: azole
definition: An azole based on a five-membered heterocyclic aromatic skeleton containing one N and one O atom.
imported from: chebi.owl

sulfone
type: Class
subclass of: organosulfur compound
definition: An organosulfur compound having the structure RS(=O)2R (R =/= H).
imported from: chebi.owl

oxo monocarboxylic acid
type: Class
subclass of: monocarboxylic acid
subclass of: oxo carboxylic acid
definition: Any monocarboxylic acid having at least one additional oxo functional group.
imported from: chebi.owl

imidazopyrimidine
type: Class
subclass of: organic heterobicyclic compound
subclass of: heteroarene
subclass of: organonitrogen heterocyclic compound
imported from: chebi.owl

sterol ester
type: Class
subclass of: carboxylic ester
subclass of: steroid ester
definition: A steroid ester obtained by formal condensation of the carboxy group of any carboxylic acid with the 3-hydroxy group of a sterol.
imported from: chebi.owl
has_alternative_id: CHEBI:13220
has_alternative_id: CHEBI:15115
has_alternative_id: CHEBI:26770
has_alternative_id: CHEBI:26772
has_alternative_id: CHEBI:9268
has_alternative_id: CHEBI:9269

bridged compound
type: Class
subclass of: polycyclic compound
definition: A polycyclic compound in which two rings have two or more atoms in common.
imported from: chebi.owl

penam
type: Class
subclass of: natural product fundamental parent
subclass of: penams
definition: Compound comprising a beta-lactam ring fused to a saturated 5-membered ring containing one sulfur atom.
imported from: chebi.owl

penams
type: Class
subclass of: organic heterobicyclic compound
subclass of: beta-lactam antibiotic
subclass of: organosulfur heterocyclic compound
definition: Natural and synthetic antibiotics containing the 4-thia-1-azabicyclo[3.2.0]heptan-7-one structure, generally assumed to have the 5R configuration unless otherwise specified.
imported from: chebi.owl

protein
type: Class
subclass of: information biomacromolecule
definition: A biological macromolecule minimally consisting of one polypeptide chain synthesized at the ribosome.
imported from: chebi.owl
has_alternative_id: CHEBI:13677
has_alternative_id: CHEBI:14911

organic chloride salt
type: Class
subclass of: chloride salt
subclass of: organic halide salt
imported from: chebi.owl

polyatomic entity
type: Class
subclass of: molecular entity
definition: Any molecular entity consisting of more than one atom.
imported from: chebi.owl

polyatomic ion
type: Class
subclass of: ion
subclass of: polyatomic entity
definition: An ion consisting of more than one atom.
imported from: chebi.owl

phosphorus oxoacid derivative
type: Class
subclass of: oxoacid derivative
subclass of: phosphorus oxoacids and derivatives
imported from: chebi.owl

phosphorus oxoacids and derivatives
type: Class
subclass of: phosphorus molecular entity
imported from: chebi.owl

alkaline earth salt
type: Class
subclass of: salt
subclass of: alkaline earth molecular entity
imported from: chebi.owl

mancude organic heterotricyclic parent
type: Class
subclass of: organic heterotricyclic compound
subclass of: mancude organic heterocyclic parent
imported from: chebi.owl

acridine
type: Class
subclass of: acridines
subclass of: mancude organic heterotricyclic parent
subclass of: polycyclic heteroarene
subclass of: antimicrobial resistance test drug
definition: A polycyclic heteroarene that is anthracene in which one of the central CH groups is replaced by a nitrogen atom.
imported from: chebi.owl

carbonyl compound
type: Class
subclass of: organic oxo compound
subclass of: organooxygen compound
definition: Any compound containing the carbonyl group, C=O. The term is commonly used in the restricted sense of aldehydes and ketones, although it actually includes carboxylic acids and derivatives.
imported from: chebi.owl

organic oxo compound
type: Class
subclass of: organic molecule
definition: Organic compounds containing an oxygen atom, =O, doubly bonded to carbon or another element.
imported from: chebi.owl

organochlorine compound
type: Class
subclass of: organohalogen compound
subclass of: chlorine molecular entity
definition: An organochlorine compound is a compound containing at least one carbon-chlorine bond.
imported from: chebi.owl

heterotricyclic compound
type: Class
subclass of: heteropolycyclic compound
imported from: chebi.owl

aminoquinoline
type: Class
subclass of: quinolines
subclass of: aromatic amine
definition: Any member of the class of quinolines in which the quinoline skeleton is substituted by one or more amino or substituted-amino groups.
imported from: chebi.owl

carbobicyclic compound
type: Class
subclass of: bicyclic compound
subclass of: carbopolycyclic compound
definition: A bicyclic compound in which all the ring atoms are carbon.
imported from: chebi.owl

hydrochloride
type: Class
subclass of: organic chloride salt
definition: A salt formally resulting from the reaction of hydrochloric acid with an organic base.
imported from: chebi.owl

oxime O-ether
type: Class
subclass of: ether
subclass of: organonitrogen compound
definition: O-organyl oximes R2C=NOR' (R' =/= H).
imported from: chebi.owl

3-hydroxy steroid
type: Class
subclass of: hydroxy steroid
definition: Any hydroxy steroid carrying a hydroxy group at position 3.
imported from: chebi.owl

3alpha-hydroxy steroid
type: Class
subclass of: secondary alcohol
subclass of: 3-hydroxy steroid
definition: A 3-hydroxy steroid in which the 3-hydroxy substituent is in the alpha-position.
imported from: chebi.owl
has_alternative_id: CHEBI:71194

11-hydroxy steroid
type: Class
subclass of: hydroxy steroid
imported from: chebi.owl

inorganic ion
type: Class
subclass of: inorganic molecular entity
subclass of: ion
imported from: chebi.owl

organochalcogen compound
type: Class
subclass of: heteroorganic entity
subclass of: chalcogen molecular entity
definition: An organochalcogen compound is a compound containing at least one carbon-chalcogen bond.
imported from: chebi.owl

organooxygen compound
type: Class
subclass of: oxygen molecular entity
subclass of: organochalcogen compound
definition: An organochalcogen compound containing at least one carbon-oxygen bond.
imported from: chebi.owl

organobromine compound
type: Class
subclass of: organohalogen compound
subclass of: bromine molecular entity
definition: A compound containing at least one carbon-bromine bond.
imported from: chebi.owl

organofluorine compound
type: Class
subclass of: organohalogen compound
subclass of: fluorine molecular entity
definition: An organofluorine compound is a compound containing at least one carbon-fluorine bond.
imported from: chebi.owl

cinoxacin
type: Class
subclass of: oxo carboxylic acid
subclass of: oxacycle
subclass of: cinnolines
subclass of: antimicrobial resistance test drug
definition: A member of the class of cinnolines that is 6,7-methylenedioxycinnolin-4(1H)-one bearing an ethyl group at position 1 and a carboxylic acid group at position 3. An analogue of oxolinic acid, it has similar antibacterial actions. It was formerly used for the treatment of urinary tract infections.
imported from: chebi.owl
has_alternative_id: CHEBI:314701

organic hydride
type: Class
subclass of: hydrides
imported from: chebi.owl

clarithromycin
type: Class
subclass of: macrolide antibiotic
subclass of: second line or reserve tuberculosis drug
definition: The 6-O-methyl ether of erythromycin A, clarithromycin is a macrolide antibiotic used in the treatment of respiratory-tract, skin and soft-tissue infections. It is also used to eradicate Helicobacter pylori in the treatment of peptic ulcer disease. It prevents bacteria from growing by interfering with their protein synthesis.
alternative term: Clr
imported from: chebi.owl
has_alternative_id: CHEBI:41676
has_alternative_id: CHEBI:442148
has_alternative_id: CHEBI:670147

cyclic ether
type: Class
subclass of: ether
subclass of: oxacycle
definition: Any ether in which the oxygen atom forms part of a ring.
imported from: chebi.owl
has_alternative_id: CHEBI:37406

clindamycin
type: Class
subclass of: carbohydrate-containing antibiotic
subclass of: S-glycosyl compound
subclass of: organochlorine compound
subclass of: pyrrolidinecarboxamide
subclass of: semisynthetic derivative
definition: A carbohydrate-containing antibiotic that is the semisynthetic derivative of lincomycin, a natural antibiotic.
imported from: chebi.owl
has_alternative_id: CHEBI:47331

clofazimine
type: Class
subclass of: phenazines
subclass of: monochlorobenzenes
subclass of: second line or reserve tuberculosis drug
definition: 3-Isopropylimino-3,5-dihydro-phenazine in which the hydrogen at position 5 is substituted substituted by a 4-chlorophenyl group, and that at position 2 is substituted by a (4-chlorophenyl)amino group. A dark red crystalline solid, clofazimine is an antimycobacterial and is one of the main drugs used for the treatment of multi-bacillary leprosy. However, it can cause red/brown discolouration of the skin, so other treatments are often preferred in light-skinned patients.
alternative term: Cfz
imported from: chebi.owl
has_alternative_id: CHEBI:355347

heteroatomic molecular entity
type: Class
subclass of: polyatomic entity
definition: A molecular entity consisting of two or more chemical elements.
imported from: chebi.owl

halide
type: Class
subclass of: halogen molecular entity
subclass of: heteroatomic molecular entity
definition: Any heteroatomic molecular entity that is a chemical compound of halogen with other chemical elements.
imported from: chebi.owl

carboxamide
type: Class
subclass of: primary amide
subclass of: organonitrogen compound
subclass of: organooxygen compound
definition: An amide of a carboxylic acid, having the structure RC(=O)NR2. The term is used as a suffix in systematic name formation to denote the -C(=O)NH2 group including its carbon atom.
imported from: chebi.owl
has_alternative_id: CHEBI:35354
has_alternative_id: CHEBI:35355

mixed diacylamine
type: Class
subclass of: imide
definition: Any imide in which the acyl substituents are any two from carboacyl, sulfonyl and phosphoryl
imported from: chebi.owl

phosphoric ester
type: Class
subclass of: phosphoric acid derivative
subclass of: ester
imported from: chebi.owl
has_alternative_id: CHEBI:26019

organic phosphoramidate
type: Class
subclass of: organic phosphate
imported from: chebi.owl

hydroxycoumarin
type: Class
subclass of: coumarins
definition: Any coumarin carrying at least one hydroxy substituent.
imported from: chebi.owl
has_alternative_id: CHEBI:24691
has_alternative_id: CHEBI:24692

arbekacin
type: Class
subclass of: kanamycins
definition: A kanamycin that is kanamycin B bearing an N-(2S)-4-amino-2-hydroxybutyryl group on the aminocyclitol ring.
imported from: chebi.owl

astromicin
type: Class
subclass of: amino cyclitol glycoside
subclass of: aminoglycoside antibiotic
subclass of: diol
subclass of: monocarboxylic acid amide
subclass of: primary amino compound
definition: An amino cyclitol glycoside that is L-chiro-inositol in which the hydroxy groups at positions 1, 4, and 6 are replaced by aminoacetyl)methylamino, amino, and methoxy groups, respectively, and in which the hydroxy group at position 3 is converted to the corresponding 2,6-diamino-2,3,4,6,7-pentadeoxy-beta-L-lyxo-heptopyranoside. The major component of fortimicin, obtained from Micromonospora olivasterospora. It is administered (as the sulfate salt) by intramuscular injection or intravenous infusion for the treatment of severe systemic infections due to sensitive Gram-negative organisms.
imported from: chebi.owl

dibekacin
type: Class
subclass of: kanamycins
definition: A kanamycin that is kanamycin B lacking the 3- and 4-hydroxy groups on the 2,6-diaminosugar ring.
imported from: chebi.owl

carbotricyclic compound
type: Class
subclass of: carbopolycyclic compound
subclass of: organic tricyclic compound
definition: A carbopolyclic compound comprising of three carbocyclic rings.
imported from: chebi.owl

heteroarenecarboxylate ester
type: Class
subclass of: carboxylic ester
subclass of: aromatic ester
imported from: chebi.owl

thiadiazoles
type: Class
subclass of: organic heteromonocyclic compound
imported from: chebi.owl

organonitrogen heterocyclic compound
type: Class
subclass of: organic heterocyclic compound
subclass of: organonitrogen compound
definition: Any organonitrogen compound containing a cyclic component with nitrogen and at least one other element as ring member atoms.
imported from: chebi.owl

triazines
type: Class
subclass of: organic heteromonocyclic compound
subclass of: azaarene
definition: Compounds based on a triazine skeleton.
imported from: chebi.owl

oxacycle
type: Class
subclass of: organic heterocyclic compound
subclass of: organooxygen compound
definition: Any organic heterocyclic compound containing at least one ring oxygen atom.
imported from: chebi.owl

organosulfur heterocyclic compound
type: Class
subclass of: organic heterocyclic compound
subclass of: organosulfur compound
imported from: chebi.owl

lactol
type: Class
subclass of: hemiacetal
definition: Cyclic hemiacetals formed by intramolecular addition of a hydroxy group to an aldehydic or ketonic carbonyl group. They are thus 1-oxacycloalkan-2-ols or unsaturated analogues.
imported from: chebi.owl

organic heterotetracyclic compound
type: Class
subclass of: organic heteropolycyclic compound
imported from: chebi.owl

organic heteropolycyclic compound
type: Class
subclass of: organic heterocyclic compound
subclass of: heteropolycyclic compound
imported from: chebi.owl
has_alternative_id: CHEBI:25429
has_alternative_id: CHEBI:38075

monocyclic heteroarene
type: Class
subclass of: heteroarene
imported from: chebi.owl

polycyclic heteroarene
type: Class
subclass of: heteroarene
imported from: chebi.owl

pyrrolidines
type: Class
subclass of: organic heteromonocyclic compound
subclass of: organonitrogen heterocyclic compound
definition: Any of a class of heterocyclic amines having a saturated five-membered ring.
imported from: chebi.owl
has_alternative_id: CHEBI:26922
has_alternative_id: CHEBI:38191

imidazolidines
type: Class
subclass of: diazolidine
imported from: chebi.owl

azabicycloalkane
type: Class
subclass of: organic heterobicyclic compound
subclass of: organonitrogen heterocyclic compound
imported from: chebi.owl

diazolidine
type: Class
subclass of: organic heteromonocyclic compound
subclass of: organonitrogen heterocyclic compound
imported from: chebi.owl

cephem
type: Class
subclass of: organic heterobicyclic compound
subclass of: beta-lactam antibiotic
subclass of: organosulfur heterocyclic compound
imported from: chebi.owl

diazines
type: Class
subclass of: organic heteromonocyclic compound
subclass of: organonitrogen heterocyclic compound
definition: Any organic heterocyclic compound containing a benzene ring in which two of the C-H fragments have been replaced by isolobal nitrogens (the diazine parent structure).
imported from: chebi.owl

pyrazines
type: Class
subclass of: diazines
imported from: chebi.owl

oxazolidines
type: Class
subclass of: organic heteromonocyclic compound
subclass of: organonitrogen heterocyclic compound
subclass of: oxacycle
imported from: chebi.owl

3,6-diamino-10-methylacridinium chloride
type: Class
subclass of: organic chloride salt
definition: The 10-methochloride salt of 3,6-diaminoacridine. Note that a mixture of this compound with 3,6-diaminoacridine (proflavine) is known as acriflavine or neutral acriflavine.
imported from: chebi.owl

1,3-thiazoles
type: Class
subclass of: thiazoles
imported from: chebi.owl
has_alternative_id: CHEBI:26949
has_alternative_id: CHEBI:38417

1-benzopyran
type: Class
subclass of: benzopyran
imported from: chebi.owl

chromenone
type: Class
subclass of: chromenes
imported from: chebi.owl

hydrazone
type: Class
subclass of: organonitrogen compound
definition: Compounds having the structure R2C=NNR2, formally derived from aldehydes or ketones by replacing =O by =NNH2 (or substituted analogues).
imported from: chebi.owl

difluorobenzene
type: Class
subclass of: fluorobenzenes
definition: Any member of the class of fluorobenzenes containing a mono- or poly-substituted benzene ring carrying two fluorine atoms.
imported from: chebi.owl

cinnolines
type: Class
subclass of: organonitrogen heterocyclic compound
subclass of: organic heteropolycyclic compound
definition: Any organic heteropolycyclic compound based on the 1,2-diaza analogue of naphthalene and its substituted derivatives.
imported from: chebi.owl

morpholines
type: Class
subclass of: oxazinane
definition: Any compound containing morpholine as part of its structure.
imported from: chebi.owl

coumermycin A1
type: Class
subclass of: coumarins
subclass of: glycoside
subclass of: pyrroles
subclass of: heteroarenecarboxylate ester
subclass of: aromatic amide
definition: A hydroxycoumarin antibiotic that is obtained from Streptomyces rishiriensis and exhibits potent antibacterial and anticancer activity.
imported from: chebi.owl

phenazines
type: Class
subclass of: organic heterotricyclic compound
subclass of: organonitrogen heterocyclic compound
definition: Any organonitrogen heterocyclic compound based on a phenazine skeleton and derivatives.
imported from: chebi.owl

dibenzopyridine
type: Class
subclass of: organic heterotricyclic compound
subclass of: organonitrogen heterocyclic compound
imported from: chebi.owl

naphthofuran
type: Class
subclass of: organic heterotricyclic compound
subclass of: oxacycle
imported from: chebi.owl

1,2,4-triazines
type: Class
subclass of: triazines
definition: Any compound with a 1,2,4-triazine skeleton, in which nitrogen atoms replace carbon at positions 1, 2 and 4 of the core benzene ring structure.
imported from: chebi.owl

pyrimidines
type: Class
subclass of: diazines
subclass of: antimicrobial resistance test drug
definition: Any compound having a pyrimidine as part of its structure.
imported from: chebi.owl
has_alternative_id: CHEBI:13681
has_alternative_id: CHEBI:26448

cyclic ketone
type: Class
subclass of: ketone
imported from: chebi.owl

D-cycloserine
type: Class
subclass of: 4-amino-1,2-oxazolidin-3-one
subclass of: organonitrogen heterocyclic antibiotic
subclass of: organooxygen heterocyclic antibiotic
subclass of: second line or reserve tuberculosis drug
definition: A 4-amino-1,2-oxazolidin-3-one that has R configuration. It is an antibiotic produced by Streptomyces garyphalus or S. orchidaceus and is used as part of a multi-drug regimen for the treatment of tuberculosis when resistance to, or toxicity from, primary drugs has developed. An analogue of D-alanine, it interferes with bacterial cell wall synthesis in the cytoplasm by competitive inhibition of L-alanine racemase (which forms D-alanine from L-alanine) and D-alanine--D-alanine ligase (which incorporates D-alanine into the pentapeptide required for peptidoglycan formation and bacterial cell wall synthesis).
alternative term: CYC
alternative term: Cs
imported from: chebi.owl
has_alternative_id: CHEBI:4030

ertapenem
type: Class
subclass of: carbapenemcarboxylic acid
subclass of: pyrrolidinecarboxamide
definition: Meropenem in which the one of the two methyl groups attached to the amide nitrogen is replaced by hydrogen while the other is replaced by a 3-carboxyphenyl group. The sodium salt is used for the treatment of moderate to severe susceptible infections including intra-abdominal and acute gynaecological infections, pneumonia, and infections of the skin and of the urinary tract.
imported from: chebi.owl
has_alternative_id: CHEBI:471574

dalfopristin
type: Class
subclass of: secondary carboxamide
subclass of: tertiary carboxamide
subclass of: macrolide antibiotic
subclass of: secondary alcohol
subclass of: sulfone
subclass of: cyclic ketone
subclass of: 1,3-oxazoles
subclass of: tertiary amino compound
subclass of: enamide
definition: A macrolide that is pristinamycin IIA in which the double bond between positions 26 and 26a of the pyrroline ring has been reduced and position 26R carries a [2-(diethylamino)ethyl]sulfonyl group. It is a semi-synthetic streptogramin antibiotic and often used as a mixture with quinupristin for the treatment of vancomycin-resistant Enterococcus faecium.
imported from: chebi.owl
has_alternative_id: CHEBI:42127

meropenem
type: Class
subclass of: organic sulfide
subclass of: carbapenemcarboxylic acid
subclass of: pyrrolidinecarboxamide
subclass of: alpha,beta-unsaturated monocarboxylic acid
definition: A carbapenemcarboxylic acid in which the azetidine and pyrroline rings carry 1-hydroxymethyl and in which the azetidine and pyrroline rings carry 1-hydroxymethyl and 5-(dimethylcarbamoyl)pyrrolidin-3-ylthio substituents respectively.
imported from: chebi.owl

fosmidomycin
type: Class
subclass of: hydroxamic acid
subclass of: phosphonic acids
definition: Propylphosphonic acid in which one of the hydrogens at position 3 is substituted by a formyl(hydroxy)amino group. An antibiotic obtained from Streptomyces lavendulae, it specifically inhibits DXP reductoisomerase (EC 1.1.1.267), a key enzyme in the non-mevalonate pathway of isoprenoid biosynthesis.
imported from: chebi.owl
has_alternative_id: CHEBI:42526

Destomysin
type: Class
subclass of: amino cyclitol
imported from: chebi.owl

dicloxacillin
type: Class
subclass of: penicillin
subclass of: dichlorobenzene
definition: A penicillin that is 6-aminopenicillanic acid in which one of the amino hydrogens is replaced by a 3-(2,6-dichlorophenyl)-5-methyl-1,2-oxazol-4-yl]formyl group.
imported from: chebi.owl

ribostamycin
type: Class
subclass of: amino cyclitol glycoside
subclass of: aminoglycoside antibiotic
definition: An amino cyclitol glycoside that is 4,6-diaminocyclohexane-1,2,3-triol having a 2,6-diamino-2,6-dideoxy-alpha-D-glucosyl residue attached at position 1 and a beta-D-ribosyl residue attached at position 2. It is an antibiotic produced by Streptomyces ribosidificus (formerly S. thermoflavus).
imported from: chebi.owl

pyrazinecarboxamide
type: Class
subclass of: monocarboxylic acid amide
subclass of: pyrazines
subclass of: N-acylammonia
subclass of: GENEPIO_0002071
user interface label: pyrazinamide
definition: A monocarboxylic acid amide resulting from the formal condensation of the carboxy group of pyrazinoic acid (pyrazine-2-carboxylic acid) with ammonia. A prodrug for pyrazinoic acid, pyrazinecarboxamide is used as part of multidrug regimens for the treatment of tuberculosis.
alternative term: Pza
imported from: chebi.owl
has_alternative_id: CHEBI:45281
has_alternative_id: CHEBI:8656

rifabutin
type: Class
subclass of: rifamycins
subclass of: second line or reserve tuberculosis drug
imported from: chebi.owl
has_alternative_id: CHEBI:45364
has_alternative_id: CHEBI:8857

carbapenems
type: Class
subclass of: organic heterobicyclic compound
subclass of: beta-lactam antibiotic
definition: The class of beta-lactam antibiotics that whose members have a carbapenem skeleton which is variously substituted at positions 3, 4, and 6.
imported from: chebi.owl

carbapenemcarboxylic acid
type: Class
subclass of: monocarboxylic acid
subclass of: carbapenems
imported from: chebi.owl

pyrrolidinecarboxamide
type: Class
subclass of: monocarboxylic acid amide
subclass of: pyrrolidines
subclass of: antimicrobial resistance test drug
imported from: chebi.owl

1,3-oxazoles
type: Class
subclass of: oxazole
imported from: chebi.owl

N-alkylpiperazine
type: Class
subclass of: piperazines
subclass of: tertiary amino compound
imported from: chebi.owl

N-iminopiperazine
type: Class
subclass of: piperazines
imported from: chebi.owl

N-arylpiperazine
type: Class
subclass of: piperazines
subclass of: aromatic amine
subclass of: tertiary amino compound
imported from: chebi.owl

lipopeptide
type: Class
subclass of: peptide
subclass of: lipid
definition: A compound consisting of a peptide with attached lipid.
imported from: chebi.owl

N-methylpiperazine
type: Class
subclass of: N-alkylpiperazine
imported from: chebi.owl

oxanes
type: Class
subclass of: organic heteromonocyclic compound
subclass of: oxacycle
definition: Any organic heteromonocyclic compoundthat is oxane or its substituted derivatives.
imported from: chebi.owl

oxazinane
type: Class
subclass of: organic heteromonocyclic compound
subclass of: organonitrogen heterocyclic compound
subclass of: oxacycle
imported from: chebi.owl

tetrahydrofuranol
type: Class
subclass of: oxolanes
imported from: chebi.owl

dihydroxytetrahydrofuran
type: Class
subclass of: tetrahydrofuranol
imported from: chebi.owl

double-stranded DNA
type: Class
subclass of: deoxyribonucleic acid
imported from: chebi.owl

imipenem
type: Class
subclass of: carbapenems
subclass of: beta-lactam antibiotic allergen
subclass of: second line or reserve tuberculosis drug
definition: A broad-spectrum, intravenous beta-lactam antibiotic of the carbapenem subgroup.
imported from: chebi.owl
has_alternative_id: CHEBI:5879

cefixime
type: Class
subclass of: cephalosporin
definition: A third-generation cephalosporin antibiotic bearing vinyl and (2Z)-2-(2-amino-1,3-thiazol-4-yl)-2-[(carboxymethoxy)imino]acetamido groups at positions 3 and 7, respectively, of the cephem skeleton. It is used in the treatment of gonorrhoea, tonsilitis, pharyngitis, bronchitis, and urinary tract infections.
imported from: chebi.owl
has_alternative_id: CHEBI:3487

dirithromycin
type: Class
subclass of: macrolide antibiotic
definition: The hemi-aminal resulting from the condensation of the erythromycin derivative (9S)-erythromycyclamine with 2-(2-methoxyethoxy)acetaldehyde. As the oxazine ring containing the hemi-aminal group is unstable under both acidic and alkaline conditions, dirithromycin functions as a more lipid-soluble prodrug for (9S)-erythromycyclamine. Administered as enteric coated tablets to protect it from acid catalysed hydrolysis in the stomach, it is used to treat respiratory tract, skin, and soft tissue infections caused by susceptible organisms.
imported from: chebi.owl

cefazolin
type: Class
subclass of: cephalosporin
subclass of: tetrazoles
subclass of: thiadiazoles
subclass of: beta-lactam antibiotic allergen
definition: A first-generation cephalosporin compound having [(5-methyl-1,3,4-thiadiazol-2-yl)sulfanyl]methyl and (1H-tetrazol-1-ylacetyl)amino side-groups at positions 3 and 7 respectively.
imported from: chebi.owl
has_alternative_id: CHEBI:3482

acetate ester
type: Class
subclass of: carboxylic ester
definition: Any carboxylic ester where the carboxylic acid component is acetic acid.
imported from: chebi.owl
has_alternative_id: CHEBI:13244
has_alternative_id: CHEBI:13799
has_alternative_id: CHEBI:22189
has_alternative_id: CHEBI:2406

aminoglycoside
type: Class
subclass of: glycoside
imported from: chebi.owl

cefepime
type: Class
subclass of: cephalosporin
subclass of: oxime O-ether
definition: A cephalosporin bearing (1-methylpyrrolidinium-1-yl)methyl and (2Z)-2-(2-amino-1,3-thiazol-4-yl)-2-(methoxyimino)acetamido groups at positions 3 and 7, respectively, of the cephem skeleton.
imported from: chebi.owl
has_alternative_id: CHEBI:3486
has_alternative_id: CHEBI:473919

steroid ester
type: Class
subclass of: steroid
subclass of: ester
imported from: chebi.owl
has_alternative_id: CHEBI:26762

3-oxo monocarboxylic acid
type: Class
subclass of: oxo monocarboxylic acid
imported from: chebi.owl
has_alternative_id: CHEBI:13600
has_alternative_id: CHEBI:1619
has_alternative_id: CHEBI:35949

steroid acid
type: Class
subclass of: steroid
subclass of: organic acid
definition: Any steroid substituted by at least one carboxy group.
imported from: chebi.owl

thiocarboxamide
type: Class
subclass of: primary amide
definition: Any primary amide having its amide oxygen replaced by sulfur.
imported from: chebi.owl

ethambutol
type: Class
subclass of: ethanolamines
subclass of: ethylenediamine derivative
subclass of: GENEPIO_0002071
definition: An ethylenediamine derivative that is ethane-1,2-diamine in which one hydrogen attached to each of the nitrogens is sutstituted by a 1-hydroxybutan-2-yl group (S,S-configuration). It is a bacteriostatic antimycobacterial drug, effective against Mycobacterium tuberculosis and some other mycobacteria. It is used (as the dihydrochloride salt) in combination with other antituberculous drugs in the treatment of pulmonary and extrapulmonary tuberculosis; resistant strains of M. tuberculosis are readily produced if ethambutol is used alone.
alternative term: E
alternative term: ETB
alternative term: Emb
imported from: chebi.owl
has_alternative_id: CHEBI:133410
has_alternative_id: CHEBI:659237
has_alternative_id: CHEBI:678172

clavulanate
type: Class
subclass of: monocarboxylic acid anion
subclass of: second line or reserve tuberculosis drug
definition: The conjugate base of clavulanic acid.
imported from: chebi.owl

gypsum
type: Class
subclass of: calcium sulfate dihydrate
imported from: chebi.owl

roxithromycin
type: Class
subclass of: erythromycin derivative
subclass of: semisynthetic derivative
definition: Semisynthetic derivative of erythromycin A.
imported from: chebi.owl

ethionamide
type: Class
subclass of: pyridines
subclass of: thiocarboxamide
subclass of: second line or reserve tuberculosis drug
subclass of: antimicrobial resistance test drug
definition: A thiocarboxamide that is pyridine-4-carbothioamide substituted by an ethyl group at position 2. A prodrug that undergoes metabolic activation by conversion to the corresponding S-oxide.
alternative term: ETH
alternative term: Eto
imported from: chebi.owl

thiazoles
type: Class
subclass of: organosulfur heterocyclic compound
subclass of: azole
definition: An azole in which the five-membered heterocyclic aromatic skeleton contains a N atom and one S atom.
imported from: chebi.owl

erythromycin derivative
type: Class
subclass of: erythromycins
imported from: chebi.owl

clavulanic acid
type: Class
subclass of: oxapenam
definition: Antibiotic isolated from Streptomyces clavuligerus. It acts as a suicide inhibitor of bacterial beta-lactamase enzymes.
imported from: chebi.owl
has_alternative_id: CHEBI:3736
has_alternative_id: CHEBI:43442

substituted aniline
type: Class
subclass of: anilines
imported from: chebi.owl

carbocyclic antibiotic
type: Class
subclass of: carbocyclic compound
imported from: chebi.owl

cloxacillin
type: Class
subclass of: semisynthetic derivative
subclass of: penicillin allergen
definition: A semisynthetic penicillin antibiotic carrying a 3-(2-chlorophenyl)-5-methylisoxazole-4-carboxamido group at position 6.
imported from: chebi.owl
has_alternative_id: CHEBI:3765
has_alternative_id: CHEBI:49565

organic amino compound
type: Class
subclass of: organonitrogen compound
definition: A compound formally derived from ammonia by replacing one, two or three hydrogen atoms by organyl groups.
imported from: chebi.owl

pefloxacin
type: Class
subclass of: quinolone
subclass of: monocarboxylic acid
subclass of: N-alkylpiperazine
subclass of: N-arylpiperazine
subclass of: quinolone antibiotic
subclass of: fluoroquinolone antibiotic
definition: A quinolone that is 4-oxo-1,4-dihydroquinoline which is substituted at positions 1, 3, 6 and 7 by ethyl, carboxy, fluorine, and 4-methylpiperazin-1-yl groups, respectively.
imported from: chebi.owl

monobactam
type: Class
subclass of: beta-lactam antibiotic
definition: Monocyclic, bacterially produced or semisynthetic beta-lactam antibiotic. It lacks the double ring construction of the traditional beta-lactam antibiotics and can be easily synthesized.
imported from: chebi.owl

organic molecular entity
type: Class
subclass of: carbon group molecular entity
definition: Any molecular entity that contains carbon.
imported from: chebi.owl
has_alternative_id: CHEBI:25700
has_alternative_id: CHEBI:33244

azaarene
type: Class
subclass of: heteroarene
subclass of: organonitrogen heterocyclic compound
imported from: chebi.owl

azabicycloalkene
type: Class
subclass of: organonitrogen heterocyclic compound
imported from: chebi.owl

diarsenes
type: Class
subclass of: arsenic molecular entity
definition: Compounds with structure RAs=AsR.
imported from: chebi.owl

flucloxacillin
type: Class
subclass of: penicillin allergen
definition: A penicillin compound having a 6beta-[3-(2-chloro-6-fluorophenyl)-5-methyl-1,2-oxazole-4-carboxamido] side-chain.
imported from: chebi.owl

primary amino compound
type: Class
subclass of: organic amino compound
definition: A compound formally derived from ammonia by replacing one hydrogen atom by an organyl group.
imported from: chebi.owl

secondary amino compound
type: Class
subclass of: organic amino compound
definition: A compound formally derived from ammonia by replacing two hydrogen atoms by organyl groups.
imported from: chebi.owl

tertiary amino compound
type: Class
subclass of: organic amino compound
definition: A compound formally derived from ammonia by replacing three hydrogen atoms by organyl groups.
imported from: chebi.owl

macrocycle
type: Class
subclass of: cyclic compound
definition: A cyclic compound containing nine or more atoms as part of the cyclic system.
imported from: chebi.owl

organic halide salt
type: Class
subclass of: organic salt
imported from: chebi.owl

nitrogen molecular entity
type: Class
subclass of: pnictogen molecular entity
imported from: chebi.owl
has_alternative_id: CHEBI:25556
has_alternative_id: CHEBI:7594

dipolar compound
type: Class
subclass of: organic molecule
definition: An organic molecule that is electrically neutral carrying a positive and a negative charge in one of its major canonical descriptions. In most dipolar compounds the charges are delocalized; however the term is also applied to species where this is not the case.
imported from: chebi.owl

cyclopropanes
type: Class
subclass of: carbocyclic compound
definition: Cyclopropane and its derivatives formed by substitution.
imported from: chebi.owl

enone
type: Class
subclass of: alpha,beta-unsaturated ketone
subclass of: olefinic compound
definition: An alpha,beta-unsaturated ketone of general formula R(1)R(2)C=CR(3)-C(=O)R(4) (R(4) =/= H) in which the C=O function is conjugated to a C=C double bond at the alpha,beta position.
imported from: chebi.owl

alpha,beta-unsaturated ketone
type: Class
subclass of: ketone
definition: A ketone of general formula R(1)R(2)C=CR(3)-C(=O)R(4) (R(4) =/= H) or R(1)C#C-C(=O)R(2) (R(2) =/= H) in which the ketonic C=O function is conjugated to an unsaturated C-C bond at the alpha,beta position.
imported from: chebi.owl

alpha,beta-unsaturated carboxylic ester
type: Class
subclass of: carboxylic ester
definition: A carboxylic ester of general formula R(1)R(2)C=CR(3)-C(=O)OR(4) (R(4) =/= H) or R(1)C#C-C(=O)OR(2) (R(2) =/= H) in which the ester C=O function is conjugated to an unsaturated C-C bond at the alpha,beta position.
imported from: chebi.owl

alpha,beta-unsaturated carboxylic acid amide
type: Class
subclass of: carboxamide
definition: A monocarboxylic amide of general formula R(1)R(2)C=CR(3)-C(=O)NR(4)R(5) or R(1)C#C-C(=O)NR(2)R(3) in which the amide C=O function is conjugated to an unsaturated C-C bond at the alpha,beta position.
imported from: chebi.owl

enamide
type: Class
subclass of: alpha,beta-unsaturated carboxylic acid amide
subclass of: olefinic compound
definition: An alpha,beta-unsaturated carboxylic acid amide of general formula R(1)R(2)C=CR(3)-C(=O)NR(4)R(5) in which the amide C=O function is conjugated to a C=C double bond at the alpha,beta position.
imported from: chebi.owl

organic heterohexacyclic compound
type: Class
subclass of: organic heteropolycyclic compound
imported from: chebi.owl

furazolidone
type: Class
subclass of: oxazolidines
subclass of: nitrofuran antibiotic
definition: A member of the class of oxazolidines that is 1,3-oxazolidin-2-one in which the hydrogen attached to the nitrogen is replaced by an N-{[(5-nitro-2-furyl)methylene]amino} group. It has antibacterial and antiprotozoal properties, and is used in the treatment of giardiasis and cholera.
imported from: chebi.owl

organic polycyclic compound
type: Class
subclass of: polycyclic compound
subclass of: organic cyclic compound
imported from: chebi.owl

organic tricyclic compound
type: Class
subclass of: organic polycyclic compound
imported from: chebi.owl

physiological role
type: Class
subclass of: biological role
imported from: chebi.owl

oxyketone
type: Class
subclass of: ketone
definition: A compound with the general formula R2C=O (R=/=H) where one or more of the R groups contains an oxy (-O-) group.
imported from: chebi.owl

alpha-oxyketone
type: Class
subclass of: oxyketone
definition: An oxyketone with the general formula R2C(=O) (R=/=H) where one or more of the R groups contains an oxy (-O-) group and the oxy and carbonyl groups are bonded to the same carbon atom.
imported from: chebi.owl

propicillin
type: Class
subclass of: penicillin
imported from: chebi.owl

gatifloxacin
type: Class
subclass of: quinolone
subclass of: quinolinemonocarboxylic acid
subclass of: organofluorine compound
subclass of: N-arylpiperazine
subclass of: quinolone antibiotic
subclass of: second line or reserve tuberculosis drug
definition: A monocarboxylic acid that is 4-oxo-1,4-dihydroquinoline-3-carboxylic acid which is substituted on the nitrogen by a cyclopropyl group and at positions 6, 7, and 8 by fluoro, 3-methylpiperazin-1-yl, and methoxy groups, respectively. Gatifloxacin is an antibiotic of the fourth-generation fluoroquinolone family, that like other members of that family, inhibits the bacterial topoisomerase type-II enzymes.
imported from: chebi.owl
has_alternative_id: CHEBI:101712

azamacrocycle
type: Class
subclass of: macrocycle
definition: A cyclic macromolecule containing one or more nitrogen atoms in place of carbon either as the divalent group NH for the group CH2 or a single trivalent nitrogen atom for the group CH.
imported from: chebi.owl

oxazinoquinoline
type: Class
subclass of: organic heterotricyclic compound
definition: Any organic heterotricyclic compound based on a skeleton comprised of an oxazine ring fused onto a quinoline system.
imported from: chebi.owl

gramicidin S
type: Class
subclass of: homodetic cyclic peptide
imported from: chebi.owl

ceftizoxime
type: Class
subclass of: cephalosporin
definition: A parenteral third-generation cephalosporin, bearing a 2-(2-amino-1,3-thiazol-4-yl)-2-(methoxyimino)acetyl]amino group at the 7beta-position.
imported from: chebi.owl
has_alternative_id: CHEBI:112105
has_alternative_id: CHEBI:3511

imidazolidinone
type: Class
subclass of: imidazolidines
definition: An imidazolidine containing one or more oxo groups.
imported from: chebi.owl

isoxazoles
type: Class
subclass of: oxazole
definition: Oxazoles in which the N and O atoms are adjacent.
imported from: chebi.owl
has_alternative_id: CHEBI:46813

oxazolidinone
type: Class
subclass of: oxazolidines
definition: An oxazolidine containing one or more oxo groups.
imported from: chebi.owl

cephamycin
type: Class
subclass of: cephem
definition: Any member of the cephamycin sub-group of cephem antibiotics, differing from cephalosporins in possessing a methoxy group at the 7alpha-position of the cephem nucleus, and in being resistant to beta-lactamase.
imported from: chebi.owl

Grepafloxacin
type: Class
subclass of: quinolines
subclass of: quinolone antibiotic
subclass of: fluoroquinolone antibiotic
imported from: chebi.owl

cephapirin
type: Class
subclass of: cephalosporin
definition: A cephalosporin with acetoxymethyl and 2(pyridin-4-ylsulfanyl)acetamido substituents at positions 3 and 7, respectively, of the cephem skeleton. It is used (as its sodium salt) as an antibiotic, being effective against gram-negative and gram-positive organisms.
imported from: chebi.owl
has_alternative_id: CHEBI:3544

carbacephem
type: Class
subclass of: organic heterobicyclic compound
subclass of: beta-lactam antibiotic
definition: Any member of a group of synthetic antibiotics, similar to cephems but with carbon substituted for the sulfur; all possessing an acylated amine functionality at C-6 and (S,R) stereochemistry at C-6 and C-7.
imported from: chebi.owl

oxacephem
type: Class
subclass of: organic heterobicyclic compound
subclass of: beta-lactam antibiotic
definition: Any member of the oxacephem sub-group of cephem antibiotics, in which the thiaazabicyclo moiety of the cephalosporins is replaced by an oxaazabicyclo moiety, and where R3 is -H or -OCH3.
imported from: chebi.owl

hemiacetal
type: Class
subclass of: alcohol
definition: A compound having the general formula RR'C(OH)OR'' (R'' =/= H).
imported from: chebi.owl

heterocyclic compound
type: Class
subclass of: cyclic compound
definition: A cyclic compound having as ring members atoms of at least two different elements.
imported from: chebi.owl

Imipenem-cilastatin
type: Class
subclass of: organic molecular entity
imported from: chebi.owl

polymyxin
type: Class
subclass of: heterodetic cyclic peptide
subclass of: lipopeptide
definition: Polymyxins are antibiotics with a general structure consisting of a cyclic peptide with a long hydrophobic tail. They disrupt the structure of the bacterial cell membrane by interacting with its phospholipids. Polymyxins are produced by the Gram-positive bacterium Bacillus polymyxa and are selectively toxic for Gram-negative bacteria.
imported from: chebi.owl

polymyxin B2
type: Class
subclass of: polymyxin
definition: A polymyxin having a 6-methylheptanoyl group at the amino terminus.
imported from: chebi.owl

colistin A
type: Class
subclass of: peptide antibiotic
subclass of: polymyxin
definition: A polymyxin having a (6R)-6-methyloctanoyl group at the amino terminus.
imported from: chebi.owl

antigen
type: Class
subclass of: biological role
definition: Any substance that stimulates an immune response in the body, such as through antibody production or by presentation to a T-cell receptor after binding to a major histocompability complex (MHC).
editor note: Currently "K antigen" is a CHEBI_73772 chemical entity rather than a role.
imported from: chebi.owl
see also: K antigen

cefditoren
type: Class
subclass of: cephalosporin
subclass of: carboxylic acid
definition: A broad spectrum, third-generation cephalosporin antibiotic with (Z)-2-(4-methyl-1,3-thiazol-5-yl)ethenyl and (2Z)-2-(2-amino-1,3-thiazol-4-yl)-2-(methoxyimino)acetamido groups at positions 3 and 7, respectively, of the cephem skeleton. Generally administered as its orally absorbed pivaloyloxymethyl ester prodrug, it is used for the treatment of mild to moderate infections caused by susceptible strains of microorganisms in acute bacterial exacerbation of chronic bronchitis, community-acquired pneumonia, pharyngitis/tonsillitis, and uncomplicated skin and skin-structure infections.
imported from: chebi.owl

colistin B
type: Class
subclass of: peptide antibiotic
subclass of: polymyxin
definition: A polymyxin having a 6-methylheptanoyl group at the amino terminus.
imported from: chebi.owl

acetal
type: Class
subclass of: organooxygen compound
definition: An organooxygen compound having the structure RR'C(OR'')(OR''') (R'', R''' =/= H). Mixed acetals have R'' and R''' groups which differ.
imported from: chebi.owl

cyclic acetal
type: Class
subclass of: organic heterocyclic compound
subclass of: acetal
definition: An acetal in the molecule of which the acetal carbon and one or both oxygen atoms thereon are members of a ring.
imported from: chebi.owl

hemiketal
type: Class
subclass of: hemiacetal
definition: A hemiacetal having the structure RR(1)C(OH)OR(2) (R, R(1), R(2) =/= H), derived from a ketone by formal addition of an alcohol to the carbonyl group.
imported from: chebi.owl

ketal
type: Class
subclass of: acetal
definition: An acetal of formula R2C(OR)2 (R =/= H) derived from a ketone by replacement of the oxo group by two hydrocarbyloxy groups. The class name 'ketals', once abandoned by IUPAC, has been reinstated as a subclass of acetals.
imported from: chebi.owl

cyclic ketal
type: Class
subclass of: oxacycle
subclass of: ketal
definition: A ketal in the molecule of which the ketal carbon and one or both oxygen atoms thereon are members of a ring.
imported from: chebi.owl

cyclic hemiketal
type: Class
subclass of: lactol
subclass of: hemiketal
definition: A hemiacetal having the structure R2C(OH)OR (R =/= H), derived from a ketone by formal addition of an alcohol to the carbonyl group. The term 'cyclic hemiketals', once abandoned by IUPAC, has been reinstated as a subclass of hemiacetals.
imported from: chebi.owl

thioacetal
type: Class
subclass of: organosulfur compound
definition: The sulfur analogue of 'acetal'. The term includes monothioacetals having the structure R2C(OR')(SR') (subclass monothioketals, R =/= H); and dithioacetals having the structure R2C(SR')2 (subclass dithioketals, R =/= H, R' =/= H).
imported from: chebi.owl

monothioacetal
type: Class
subclass of: thioacetal
definition: A thioacetal having the structure R2C(OR')(SR'). The term includes monothioketals, R =/= H, as a subclass.
imported from: chebi.owl

moxalactam
type: Class
subclass of: cephalosporin
subclass of: oxacephem
definition: A broad-spectrum oxacephem antibiotic in which the oxazine ring is substituted with a tetrazolylthiomethyl group and the azetidinone ring carries methoxy and 2-carboxy-2-(4-hydroxyphenyl)acetamido substituents.
imported from: chebi.owl
has_alternative_id: CHEBI:214506
has_alternative_id: CHEBI:44113
has_alternative_id: CHEBI:7006

chemical substance
type: Class
subclass of: chemical entity
definition: A chemical substance is a portion of matter of constant composition, composed of molecular entities of the same type or of different types.
imported from: chebi.owl

mixture
type: Class
subclass of: chemical substance
definition: A mixture is a chemical substance composed of multiple molecules, at least two of which are of a different kind.
imported from: chebi.owl

daptomycin
type: Class
subclass of: heterodetic cyclic peptide
subclass of: lipopeptide antibiotic
subclass of: macrolide
definition: A polypeptide comprising N-decanoyltryptophan, asparagine, aspartic acid, threonine, glycine, ornithine, aspartic acid, D-alanine, aspartic acid, glycine, D-serine, threo-3-methylglutamic acid and 3-anthraniloylalanine (also known as kynurinine) coupled in sequence and lactonised by condensation of the carboxylic acid group of the 3-anthraniloylalanine with the alcohol group of the threonine residue.
imported from: chebi.owl
has_alternative_id: CHEBI:29570
has_alternative_id: CHEBI:321017
has_alternative_id: CHEBI:478132
has_alternative_id: CHEBI:478255

isoniazide
type: Class
subclass of: carbohydrazide
subclass of: GENEPIO_0002071
definition: A carbohydrazide obtained by formal condensation between pyridine-4-carboxylic acid and hydrazine.
alternative term: Inh
alternative term: isoniazid
imported from: chebi.owl

bicozamycin
type: Class
subclass of: bridged compound
subclass of: azabicycloalkane
subclass of: antimicrobial resistance test drug
definition: A commercially important azabicyclic antibiotic obtained from Streptomyces sapporonensis. It inhibits the Rho protein of E. coli.
imported from: chebi.owl
has_alternative_id: CHEBI:3091

racemate
type: Class
subclass of: mixture
definition: A racemate is an equimolar mixture of a pair of enantiomers.
imported from: chebi.owl

alpha-glucoside
type: Class
subclass of: glucoside
definition: A glucoside in which the anomeric carbon of the glycosidic bond is in an alpha configuration
imported from: chebi.owl

kanamycin
type: Class
subclass of: kanamycins
subclass of: second line or reserve tuberculosis drug
definition: Kanamycin is a naturally occurring antibiotic complex from Streptomyces kanamyceticus that consists of several components: kanamycin A, the major component (also usually designated as kanamycin), and kanamycins B, C, D and X the minor components.
alternative term: Kan
imported from: chebi.owl

nucleobase-containing molecular entity
type: Class
subclass of: heteroarene
subclass of: nitrogen molecular entity
definition: Any compound that has a nucleobase as a part.
imported from: chebi.owl

amino cyclitol
type: Class
subclass of: cyclitol
definition: Any cyclitol having one or more alcoholic hydroxy groups replaced by substituted or unsubstituted amino groups.
imported from: chebi.owl

2-deoxystreptamine derivative
type: Class
subclass of: amino cyclitol
definition: Any derivative of 2-deoxystreptamine.
imported from: chebi.owl

aromatic ester
type: Class
subclass of: organic aromatic compound
subclass of: ester
definition: An ester where the ester linkage is bonded directly to an aromatic system.
imported from: chebi.owl

aromatic amide
type: Class
subclass of: amide
subclass of: organic aromatic compound
definition: An amide in which the amide linkage is bonded directly to an aromatic system.
imported from: chebi.owl

reactive nitrogen species
type: Class
subclass of: nitrogen molecular entity
definition: A family of nitrogen molecular entities which are highly reactive and derived from nitric oxide (.NO) and superoxide (O2.(-)) produced via the enzymatic activity of inducible nitric oxide synthase 2 (NOS2) and NADPH oxidase respectively.
imported from: chebi.owl

glycosyl compound
type: Class
subclass of: carbohydrate derivative
definition: A carbohydrate derivative arising formally from the elimination of water from a glycosidic hydroxy group and an H atom bound to an oxygen, carbon, nitrogen or sulfur atom of a separate entity.
imported from: chebi.owl

mycinamicin
type: Class
subclass of: macrolide antibiotic
definition: Name for a family of macrolide antibiotics with more than twenty members produced by the rare actinomycete Micromonospora griseorubida.
imported from: chebi.owl

mycinamicin IV
type: Class
subclass of: mycinamicin
definition: A mycinamicin composed of a 16-membered ring macrolactone core, an N,N-dimethylated deoxysugar desosamine and a 2,3-di-O-methylated 6-deoxysugar mycinose.
imported from: chebi.owl

carbohydrate derivative
type: Class
subclass of: carbohydrates and carbohydrate derivatives
definition: Any organooxygen compound derived from a carbohydrate by replacement of one or more hydroxy group(s) by an amino group, a thiol group or similar heteroatomic groups. The term also includes derivatives of these compounds.
imported from: chebi.owl

disaccharide derivative
type: Class
subclass of: carbohydrate derivative
definition: A carbohydrate derivative that is formally obtained from a disaccharide.
imported from: chebi.owl

monosaccharide derivative
type: Class
subclass of: carbohydrate derivative
definition: A carbohydrate derivative that is formally obtained from a monosaccharide.
imported from: chebi.owl

oligosaccharide derivative
type: Class
subclass of: glycan
subclass of: carbohydrate derivative
definition: A carbohydrate derivative that is formally obtained from an oligosaccharide.
imported from: chebi.owl

tetrasaccharide derivative
type: Class
subclass of: oligosaccharide derivative
definition: An oligosaccharide derivative that is formally obtained from a tetrasaccharide.
imported from: chebi.owl

levofloxacin
type: Class
subclass of: 9-fluoro-3-methyl-10-(4-methylpiperazin-1-yl)-7-oxo-2,3-dihydro-7H-[1,4]oxazino[2,3,4-ij]quinoline-6-carboxylic acid
subclass of: quinolone antibiotic
subclass of: fluoroquinolone antibiotic
subclass of: second line or reserve tuberculosis drug
definition: An optically active form of ofloxacin having (S)-configuration; an inhibitor of bacterial topoisomerase IV and DNA gyrase.
alternative term: Lfx
imported from: chebi.owl
has_alternative_id: CHEBI:6440

linezolid
type: Class
subclass of: acetamides
subclass of: organofluorine compound
subclass of: morpholines
subclass of: oxazolidinone
subclass of: second line or reserve tuberculosis drug
subclass of: antimicrobial resistance test drug
definition: An organofluorine compound that consists of 1,3-oxazolidin-2-one bearing an N-3-fluoro-4-(morpholin-4-yl)phenyl group as well as an acetamidomethyl group at position 5. A synthetic antibacterial agent that inhibits bacterial protein synthesis by binding to a site on 23S ribosomal RNA of the 50S subunit and prevents further formation of a functional 70S initiation complex.
alternative term: Lzd
imported from: chebi.owl
has_alternative_id: CHEBI:6477

moxifloxacin
type: Class
subclass of: quinolone
subclass of: quinolinemonocarboxylic acid
subclass of: aromatic ether
subclass of: cyclopropanes
subclass of: pyrrolidinopiperidine
subclass of: quinolone antibiotic
subclass of: fluoroquinolone antibiotic
subclass of: second line or reserve tuberculosis drug
definition: A quinolone that consists of 4-oxo-1,4-dihydroquinoline-3-carboxylic acid bearing a cyclopropyl substituent at position 1, a fluoro substitiuent at position 6, a (4aS,7aS)-octahydro-6H-pyrrolo[3,4-b]pyridin-6-yl group at position 7 and a methoxy substituent at position 8. A member of the fluoroquinolone class of antibacterial agents.
alternative term: MXF
alternative term: Mfx
imported from: chebi.owl
has_alternative_id: CHEBI:7007

Axiom
annotated source: moxifloxacin
annotated property: alternative term
annotated target: Mfx
term source: https://www.ncbi.nlm.nih.gov/books/NBK247415/bin/part3-m17.pdf

tinidazole
type: Class
subclass of: imidazoles
definition: 1H-imidazole substituted at C-1 by a (2-ethylsulfonyl)ethyl group, at C-2 by a methyl group and at C-5 by a nitro group. It is used as an antiprotozoal, antibacterial agent.
imported from: chebi.owl
has_alternative_id: CHEBI:32227

pyrrolidinopiperidine
type: Class
subclass of: organic heterobicyclic compound
subclass of: organonitrogen heterocyclic compound
definition: Any organic heterobicyclic compound containing ortho-fused pyrrolidine and piperidine rings.
imported from: chebi.owl

sulfacetamide
type: Class
subclass of: substituted aniline
subclass of: N-sulfonylcarboxamide
subclass of: antimicrobial resistance test drug
definition: A sulfonamide that is sulfanilamide acylated on the sulfonamide nitrogen.
imported from: chebi.owl

macrocyclic lactone
type: Class
subclass of: lactone
subclass of: macrocycle
definition: Any lactone in which the cyclic carboxylic ester group forms a part of a cyclic macromolecule.
imported from: chebi.owl
has_alternative_id: CHEBI:50333

oxapenam
type: Class
subclass of: beta-lactam
definition: A fused-ring beta-lactam system where the beta-lactam ring is fused to a 1,3-oxazolidine ring.
imported from: chebi.owl

organic acid
type: Class
subclass of: organic molecular entity
definition: Any organic molecular entity that is acidic and contains carbon in covalent linkage.
imported from: chebi.owl

lincomycin
type: Class
subclass of: carbohydrate-containing antibiotic
subclass of: S-glycosyl compound
subclass of: pyrrolidinecarboxamide
subclass of: L-proline derivative
definition: A carbohydrate-containing antibiotic produced by the actinomyces Streptomyces lincolnensis.
imported from: chebi.owl

polysaccharide derivative
type: Class
subclass of: glycan
subclass of: biomacromolecule
subclass of: carbohydrate derivative
definition: A carbohydrate derivative that is any derivative of a polysaccharide.
imported from: chebi.owl

Mafenide
type: Class
subclass of: aromatic amine
imported from: chebi.owl

methicillin
type: Class
subclass of: penicillin allergen
definition: A penicillin that is 6-aminopenicillanic acid in which one of the amino hydrogens is replaced by a 2,6-dimethoxybenzoyl group.
imported from: chebi.owl

azole
type: Class
subclass of: organonitrogen heterocyclic compound
subclass of: monocyclic heteroarene
subclass of: antimicrobial resistance test drug
definition: Any monocyclic heteroarene consisting of a five-membered ring containing nitrogen. Azoles can also contain one or more other non-carbon atoms, such as nitrogen, sulfur or oxygen.
imported from: chebi.owl

fidaxomicin
type: Class
subclass of: glycoside
subclass of: macrolide antibiotic
subclass of: phenols
subclass of: organochlorine compound
definition: An 18-membered macrolide that is a fermentation product obtained from the Actinomycete Dactylosporangium aurantiacum. A narrow spectrum antibiotic used for treatment of Clostridium difficile-related infections.
imported from: chebi.owl

metronidazole
type: Class
subclass of: primary alcohol
subclass of: imidazoles
subclass of: C-nitro compound
definition: A member of the class of imidazoles substituted at C-1, -2 and -5 with 2-hydroxyethyl, nitro and methyl groups respectively. It has activity against anaerobic bacteria and protozoa, and has a radiosensitising effect on hypoxic tumour cells. It may be given by mouth in tablets, or as the benzoate in an oral suspension. The hydrochloride salt can be used in intravenous infusions. Metronidazole is a prodrug and is selective for anaerobic bacteria due to their ability to intracellularly reduce the nitro group of metronidazole to give nitroso-containing intermediates. These can covalently bind to DNA, disrupting its helical structure, inducing DNA strand breaks and inhibiting bacterial nucleic acid synthesis, ultimately resulting in bacterial cell death.
imported from: chebi.owl
has_alternative_id: CHEBI:39845
has_alternative_id: CHEBI:63636

mezlocillin
type: Class
subclass of: penicillin allergen
definition: A penicillin in which the substituent at position 6 of the penam ring is a (2R)-2-[3-(methanesulfonyl)-2-oxoimidazolidine-1-carboxamido]-2-phenylacetamido group.
imported from: chebi.owl

mupirocin
type: Class
subclass of: monocarboxylic acid
subclass of: triol
subclass of: epoxide
subclass of: secondary alcohol
subclass of: oxanes
subclass of: alpha,beta-unsaturated carboxylic ester
subclass of: antimicrobial resistance test drug
definition: An alpha,beta-unsaturated ester resulting from the formal condensation of the alcoholic hydroxy group of 9-hydroxynonanoic acid with the carboxy group of (2E)-4-[(2S)-tetrahydro-2H-pyran-2-yl]-3-methylbut-2-enoic acid in which the tetrahydropyranyl ring is substituted at positions 3 and 4 by hydroxy groups and at position 5 by a {(2S,3S)-3-[(2S,3S)-3-hydroxybutan-2-yl]oxiran-2-yl}methyl group. Originally isolated from the Gram-negative bacterium Pseudomonas fluorescens, it is used as a topical antibiotic for the treatment of Gram-positive bacterial infections.
imported from: chebi.owl
has_alternative_id: CHEBI:44038

ceftaroline fosamil
type: Class
subclass of: cephalosporin
subclass of: iminium betaine
subclass of: oxime O-ether
subclass of: organic phosphoramidate
subclass of: thiadiazoles
subclass of: 1,3-thiazoles
definition: A cephalosporin having [4-(1-methylpyridinium-4-yl)-1,3-thiazol-2-yl]sulfanyl and {(2Z)-2-(ethoxyimino)-2-[5-(phosphonoamino)-1,2,4-thiadiazol-3-yl]acetyl}amino side groups located at positions 3 and 7 respectively. The N-phospho prodrug of ceftaroline, a broad-spectrum antibiotic active against methicillin-resistant Staphylococcus aureus (MRSA). It is used for the treatment of adults with acute bacterial skin and skin structure infections.
imported from: chebi.owl

telavancin
type: Class
subclass of: glycopeptide
definition: A glycopeptide that is vancomycin substituted at position N-3'' by a 2-(decylamino)ethyl group and at position C-29 by a (phosphonomethyl)aminomethyl group. Used as its hydrochloride salt for treatment of adults with complicated skin and skin structure infections caused by bacteria.
imported from: chebi.owl

nitrofurantoin
type: Class
subclass of: imidazolidine-2,4-dione
subclass of: nitrofuran antibiotic
definition: An imidazolidine-2,4-dione that is hydantoin substituted at position 1 by a [(5-nitro-2-furyl)methylene]amino group. An antibiotic that damages bacterial DNA.
imported from: chebi.owl
has_alternative_id: CHEBI:7591

lividomycins
type: Class
subclass of: amino cyclitol glycoside
subclass of: aminoglycoside antibiotic
definition: Any member of a family of aminoglycosidic antibiotics produced by the bacterium Streptomyces lividus. Note that one member of this class, lividomycin A, is also known as lividomycin.
imported from: chebi.owl

lividomycin A
type: Class
subclass of: lividomycins
definition: A member of the class of lividomycins that is lividomycin B in which position 4 of the diamino-L-idopyranosyl moiety has been converted into its alpha-D-mannopyranoside.
imported from: chebi.owl

lividomycin B
type: Class
subclass of: lividomycins
definition: A member of the class of lividomycins that is paromomycin in which the 2-amino-2-deoxyglucopyranosyl moiety is lacking the hydroxy group at position 3.
imported from: chebi.owl

bedaquiline
type: Class
subclass of: naphthalenes
subclass of: quinolines
subclass of: tertiary alcohol
subclass of: aromatic ether
subclass of: organobromine compound
subclass of: tertiary amino compound
subclass of: second line or reserve tuberculosis drug
definition: A quinoline-based antimycobacterial drug used (as its fumarate salt) for the treatment of pulmonary multi-drug resistant tuberculosis by inhibition of ATP synthase, an enzyme essential for the replication of the mycobacteria.
alternative term: Bdq
imported from: chebi.owl

semisynthetic derivative
type: Class
subclass of: organic molecular entity
definition: Any organic molecular entity derived from a natural product by partial chemical synthesis.
imported from: chebi.owl

organic molecule
type: Class
subclass of: molecule
subclass of: organic molecular entity
definition: Any molecule that consists of at least one carbon atom as part of the electrically neutral entity.
imported from: chebi.owl

1,8-naphthyridine derivative
type: Class
subclass of: naphthyridine derivative
definition: Any naphthyridine derivative that is a derivative of 1,8-naphthyridine.
imported from: chebi.owl

naphthyridine derivative
type: Class
subclass of: organic heterobicyclic compound
subclass of: organonitrogen heterocyclic compound
definition: Any organonitrogen heterocyclic compound that is a derivative of a naphthyridine.
imported from: chebi.owl

thiosugar
type: Class
subclass of: organosulfur compound
subclass of: carbohydrate derivative
definition: A carbohydrate derivative in which one or more of the oxygens or hydroxy groups of the parent carbohydrate is replaced by sulfur or -SR, where R can be hydrogen or any group.
imported from: chebi.owl

K antigen
type: Class
subclass of: polysaccharide derivative
subclass of: Restriction
  on property: has role
  some values from: antigen
definition: Any capsular polysaccharide derivative which is carried on the surface of a bacterial capsule or formed on the outer portion of a cell wall and masks somatic O antigens.
editor note: Damion Dooley's note: 'K antigen' can't be a subclass of antigen as chemical entity is disjoint from role.
imported from: chebi.owl
database_cross_reference: Snomed: Concept 260824002

D-cycloserine zwitterion
type: Class
subclass of: zwitterion
definition: A zwitterion resulting from the transfer of a proton from the ring nitrogen to the primary amino group of D-cycloserine. The major species at pH 7.3.
imported from: chebi.owl

nafcillin
type: Class
subclass of: penicillin allergen
definition: A penicillin in which the substituent at position 6 of the penam ring is a (2-ethoxy-1-naphthoyl)amino group.
imported from: chebi.owl
has_alternative_id: CHEBI:44256

framycetin
type: Class
subclass of: aminoglycoside
definition: A tetracyclic antibacterial agent derived from neomycin, being a glycoside ester of neamine and neobiosamine B.
imported from: chebi.owl
has_alternative_id: CHEBI:44577

rifaximin
type: Class
subclass of: rifamycins
subclass of: acetate ester
subclass of: organic heterohexacyclic compound
subclass of: cyclic ketal
subclass of: semisynthetic derivative
subclass of: antimicrobial resistance test drug
definition: A semisynthetic member of the class of rifamycins and non-systemic gastrointestinal site-specific broad spectrum antibiotic. Used in the treatment of traveller's diarrhoea, hepatic encephalopathy and irritable bowel syndrome.
imported from: chebi.owl

hydroxamic acid ester
type: Class
subclass of: carboxamide
definition: A carboxamide that is a hydroxamic acid in which the hydrogen of the hydroxy group is replaced by an organyl group.
imported from: chebi.owl

B vitamin
type: Class
subclass of: organonitrogen compound
subclass of: organooxygen compound
definition: Any member of the group of eight water-soluble vitamins originally thought to be a single compound (vitamin B) that play important roles in cell metabolism. The group comprises of vitamin B1, B2, B3, B5, B6, B7, B9, and B12 (Around 20 other compounds were once thought to be B vitamins but are no longer classified as such).
imported from: chebi.owl

A47934(2-)
type: Class
subclass of: organic anion
definition: An organic anion obtained by deprotonation of the carboxy, sulfo and one of the hydroxy groups as well as protonation of the amino group of A47934; major species at pH 7.3.
imported from: chebi.owl

ofloxacin
type: Class
subclass of: racemate
subclass of: quinolone antibiotic
subclass of: fluoroquinolone antibiotic
subclass of: second line or reserve tuberculosis drug
definition: A racemate comprising equimolar amounts of levofloxacin and dextrofloxacin. It is a synthetic fluoroquinolone antibacterial agent which inhibits the supercoiling activity of bacterial DNA gyrase, halting DNA replication.
alternative term: Ofx
imported from: chebi.owl
has_alternative_id: CHEBI:100146

carbohydrates and carbohydrate derivatives
type: Class
subclass of: organooxygen compound
definition: Any organooxygen compound that is a polyhydroxy-aldehyde or -ketone, or a compound derived from one. Carbohydrates contain only carbon, hydrogen and oxygen and usually have an empirical formula Cm(H2O)n; carbohydrate derivatives may contain other elements by substitution or condensation.
imported from: chebi.owl

olefinic compound
type: Class
subclass of: organic molecular entity
definition: Any organic molecular entity that contains at least one C=C bond.
imported from: chebi.owl

alpha,beta-unsaturated monocarboxylic acid
type: Class
subclass of: monocarboxylic acid
definition: A monocarboxylic acid in which the carbon of the carboxy group is directly attached to a C=C or C#C bond.
imported from: chebi.owl

paromomycin
type: Class
subclass of: amino cyclitol glycoside
subclass of: aminoglycoside antibiotic
definition: An amino cyclitol glycoside that is the 1-O-(2-amino-2-deoxy-alpha-D-glucopyranoside) and the 3-O-(2,6-diamino-2,6-dideoxy-beta-L-idopyranosyl)-beta-D-ribofuranoside of 4,6-diamino-2,3-dihydroxycyclohexane (the 1R,2R,3S,4R,6S diastereoisomer). It is obtained from various Streptomyces species. A broad-spectrum antibiotic, it is used (generally as the sulfate salt) for the treatment of acute and chronic intestinal protozoal infections, but is not effective for extraintestinal protozoal infections. It is also used as a therapeutic against visceral leishmaniasis.
imported from: chebi.owl
has_alternative_id: CHEBI:44703

monovalent inorganic anion
type: Class
subclass of: inorganic anion
definition: Any inorganic anion with a valency of one.
imported from: chebi.owl

Chalcomycin
type: Class
subclass of: macrolide
imported from: chebi.owl

piperacillin
type: Class
subclass of: penicillin allergen
definition: A penicillin in which the substituent at position 6 of the penam ring is a 2-[(4-ethyl-2,3-dioxopiperazin-1-yl)carboxamido]-2-phenylacetamido group.
imported from: chebi.owl
has_alternative_id: CHEBI:472443
has_alternative_id: CHEBI:475140
has_alternative_id: CHEBI:505944

Pleuromutilin
type: Class
subclass of: carboxylic ester
subclass of: carbotricyclic compound
subclass of: cyclic ketone
imported from: chebi.owl

oritavancin
type: Class
subclass of: glycopeptide
subclass of: disaccharide derivative
subclass of: semisynthetic derivative
definition: A semisynthetic glycopeptide used (as its bisphosphate salt) for the treatment of acute bacterial skin and skin structure infections caused or suspected to be caused by susceptible isolates of designated Gram-positive microorganisms including MRSA.
imported from: chebi.owl
has_alternative_id: CHEBI:29553

polymyxin B1
type: Class
subclass of: polymyxin
definition: A polymyxin having a (6R)-6-methyloctanoyl group at the amino terminus.
imported from: chebi.owl

monochlorobenzenes
type: Class
subclass of: chlorobenzenes
definition: Any member of the class of chlorobenzenes containing a mono- or poly-substituted benzene ring in which only one substituent is chlorine.
imported from: chebi.owl

N-acylammonia
type: Class
subclass of: carboxamide
definition: A carboxamide obtained by the formal condensation of the carboxy group of any carboxylic acid with ammonia.
imported from: chebi.owl

proteinogenic amino acid derivative
type: Class
subclass of: amino acid derivative
definition: Any derivative of a proteinogenic amino acid resulting from reaction at an amino group, carboxy group, or a side-chain functional group, or from the replacement of any hydrogen by a heteroatom.
imported from: chebi.owl

amino acid derivative
type: Class
subclass of: organonitrogen compound
definition: Any derivative of an amino acid resulting from reaction at an amino group, carboxy group, side-chain functional group, or from the replacement of any hydrogen by a heteroatom. The definition normally excludes peptides containing amino acid residues.
imported from: chebi.owl
has_alternative_id: CHEBI:25359

Pristinamycin IB
type: Class
subclass of: cyclodepsipeptide
imported from: chebi.owl

L-proline derivative
type: Class
subclass of: proline derivative
subclass of: proteinogenic amino acid derivative
definition: A proteinogenic amino acid derivative resulting from reaction of L-proline at the amino group or the carboxy group, or from the replacement of any hydrogen of L-proline by a heteroatom.
imported from: chebi.owl

pristinamycin IC
type: Class
subclass of: cyclodepsipeptide
imported from: chebi.owl

ristocetin
type: Class
subclass of: glycopeptide
subclass of: heterodetic cyclic peptide
subclass of: macrocycle
subclass of: tetrasaccharide derivative
definition: A heterodetic cyclic peptide that is produced by species of Amycolatopsis and Nocardia.
imported from: chebi.owl

spiramycin I
type: Class
subclass of: aldehyde
subclass of: macrolide
subclass of: ether
subclass of: tertiary amino compound
subclass of: disaccharide derivative
definition: A macrolide antibiotic produced by various Streptomyces species that is used to treat toxoplasmosis and various other infections of soft tissues.
imported from: chebi.owl
has_alternative_id: CHEBI:45589
has_alternative_id: CHEBI:9236

quinolone antibiotic
type: Class
subclass of: organonitrogen heterocyclic antibiotic
definition: An organonitrogen heterocyclic antibiotic whose structure contains a quinolone or quinolone-related skeleton.
imported from: chebi.owl

antibiotic antifungal agent
type: Class
subclass of: heteroorganic entity
subclass of: antimicrobial resistance test drug
definition: Heteroorganic entities that are microbial metabolites (or compounds derived from them) which have significant antifungal properties.
imported from: chebi.owl

antibiotic antifungal drug
type: Class
subclass of: antibiotic antifungal agent
definition: Any antibiotic antifungal agent used to treat fungal infections in humans or animals.
imported from: chebi.owl

antibiotic fungicide
type: Class
subclass of: antibiotic antifungal agent
definition: Any antibiotic antifungal agent that has been used as a fungicide.
imported from: chebi.owl

fluoroquinolone antibiotic
type: Class
subclass of: organonitrogen heterocyclic antibiotic
subclass of: organofluorine compound
definition: An organonitrogen heterocyclic antibiotic containing a quinolone (or quinolone-like) moiety and which have a fluorine atom attached to the central ring system.
imported from: chebi.owl

sulfonamide antibiotic
type: Class
subclass of: sulfonamide
subclass of: antimicrobial resistance test drug
definition: A class of sulfonamides whose members generally have bacteriostatic antibiotic properties.
imported from: chebi.owl

nitrofuran antibiotic
type: Class
subclass of: furans
subclass of: organonitrogen heterocyclic antibiotic
subclass of: organooxygen heterocyclic antibiotic
subclass of: C-nitro compound
definition: A member of the class of furans in which the furan ring is substituted by a nitro group and which also has significant antibiotic properties.
imported from: chebi.owl

Quinupristin
type: Class
subclass of: cyclodepsipeptide
imported from: chebi.owl

Quinupristin-dalfopristin
type: Class
subclass of: organic molecular entity
imported from: chebi.owl

penicillin allergen
type: Class
subclass of: penicillin
definition: Any penicillin which causes the onset of an allergic reaction.
imported from: chebi.owl

beta-lactam antibiotic allergen
type: Class
subclass of: beta-lactam antibiotic
definition: Any beta-lactam antibiotic which causes the onset of an allergic reaction.
imported from: chebi.owl

arsphenamine
type: Class
subclass of: organoarsenic compound
subclass of: hydrochloride
subclass of: diarsenes
imported from: chebi.owl

N-sulfonylcarboxamide
type: Class
subclass of: mixed diacylamine
definition: A mixed diacylamine resulting from the formal condensation of the nitrogen of a carboxamide with a sulphonic acid.
imported from: chebi.owl

sparfloxacin
type: Class
subclass of: quinolone
subclass of: quinolinemonocarboxylic acid
subclass of: N-arylpiperazine
subclass of: quinolone antibiotic
subclass of: fluoroquinolone antibiotic
imported from: chebi.owl

spectinomycin
type: Class
subclass of: pyranobenzodioxin
subclass of: secondary alcohol
subclass of: cyclic ketone
subclass of: secondary amino compound
subclass of: cyclic acetal
subclass of: cyclic hemiketal
subclass of: antimicrobial resistance test drug
definition: A pyranobenzodioxin and antibiotic that is active against gram-negative bacteria and used (as its dihydrochloride pentahydrate) to treat gonorrhea. It is produced by the bacterium Streptomyces spectabilis.
imported from: chebi.owl
has_alternative_id: CHEBI:45551

sulbactam
type: Class
subclass of: penicillanic acids
imported from: chebi.owl

sulfadiazine
type: Class
subclass of: pyrimidines
subclass of: substituted aniline
subclass of: sulfonamide antibiotic
definition: A sulfonamide consisting of pyrimidine with a 4-aminobenzenesulfonamido group at the 2-position.
imported from: chebi.owl

sulfadoxine
type: Class
subclass of: sulfonamide
subclass of: pyrimidines
definition: A sulfonamide consisting of pyrimidine having methoxy substituents at the 5- and 6-positions and a 4-aminobenzenesulfonamido group at the 4-position. In combination with the antiprotozoal pyrimethamine (CHEBI:8673) it is used as an antimalarial.
imported from: chebi.owl

sulfamethizole
type: Class
subclass of: thiadiazoles
subclass of: sulfonamide antibiotic
definition: A sulfonamide consisting of a 1,3,4-thiadiazole nucleus with a methyl substituent at C-5 and a 4-aminobenzenesulfonamido group at C-2.
imported from: chebi.owl

sulfamethoxazole
type: Class
subclass of: substituted aniline
subclass of: isoxazoles
subclass of: sulfonamide antibiotic
definition: An isoxazole (1,2-oxazole) compound having a methyl substituent at the 5-position and a 4-aminobenzenesulfonamido group at the 3-position.
imported from: chebi.owl
has_alternative_id: CHEBI:102247

tazobactam
type: Class
subclass of: penicillanic acids
subclass of: triazoles
definition: A member of the class of penicillanic acids that is sulbactam in which one of the exocyclic methyl hydrogens is replaced by a 1,2,3-triazol-1-yl group; used (in the form of its sodium salt) in combination with ceftolozane sulfate for treatment of complicated intra-abdominal infections and complicated urinary tract infections.
imported from: chebi.owl
has_alternative_id: CHEBI:45973

ticarcillin
type: Class
subclass of: penicillin allergen
definition: A penicillin compound having a 6beta-[(2R)-2-carboxy-2-thiophen-3-ylacetyl]amino side-group.
imported from: chebi.owl

pristinamycin IIA
type: Class
subclass of: secondary carboxamide
subclass of: tertiary carboxamide
subclass of: pyrroline
subclass of: lactam
subclass of: macrolide antibiotic
subclass of: secondary alcohol
subclass of: cyclic ketone
subclass of: 1,3-oxazoles
subclass of: enamide
definition: A macrolide that is (together with pristinamycin IA) a component of pristinamycin, an oral streptogramin antibiotic produced by Streptomyces pristinaespiralis. Pristinamycin exhibits bactericidal activity against Gram positive organisms including methicillin-resistant Staphylococcus aureus.
imported from: chebi.owl
has_alternative_id: CHEBI:46395

portion of material
type: Class
subclass of: material entity
definition: An independent material continuant that is self-connected and retains its identity over time.
imported from: chmo.owl

separation method
type: Class
subclass of: OBI_0000094
definition: A method that results in the separation of two or more components according to some property.
imported from: chmo.owl
has_alternative_id: FIX:0000002
has exact synonym: partition

electrophoresis
type: Class
subclass of: separation method
definition: A separation method where colloidal particles move at different speeds according to their electrophoretic mobilities in a separation medium, across which an electric field is applied.
imported from: chmo.owl
has_alternative_id: FIX:0000097
database_cross_reference: sep:00140
has exact synonym: cataphoresis
has exact synonym: electrophoretic analysis

gel electrophoresis
type: Class
subclass of: sieving electrophoresis
definition: A separation method where colloidal particles move at different speeds according to their electrophoretic mobilities in a separation medium consisting of gel, across which an electric field is applied.
imported from: chmo.owl
database_cross_reference: sep:00150

sieving electrophoresis
type: Class
subclass of: electrophoresis
definition: An electrophoresis method where the separation medium contains a reticulated system, for example an entangled polymer network, that further separates the analytes according to their size and shape.
imported from: chmo.owl

pulsed-field electrophoresis
type: Class
subclass of: electrophoresis
definition: A separation method where colloidal particles move at different speeds according to their electrophoretic mobilities in a separation medium, across which a pulsed electric field is applied (a field in which the voltage changes direction).
imported from: chmo.owl

pulsed-field gel electrophoresis
type: Class
subclass of: gel electrophoresis
subclass of: pulsed-field electrophoresis
definition: A separation method where colloidal particles move at different speeds according to their electrophoretic mobilities in a separation medium consisting of gel, across which a pulsed electric field is applied (one in which the voltage direction is periodically switched among three directions; one that runs through the central axis of the gel and two that run at an angle of 120° either side).
imported from: chmo.owl
has exact synonym: PFGE
has exact synonym: pulsed field gel electrophoresis

matrix
type: Class
subclass of: portion of material
user interface label: specimen extraction matrix
definition: Those components of a sample that are not measured by an experiment.
imported from: chmo.owl
comment: "This observable is important where process of capturing sample can affect dna extraction."

COVID-19 RT-PCR assay
type: Class
subclass of: OBI_0000070
definition editor: A COVID-19 nucleic acid diagnostic assay that uses RT-PCR
definition editor: Oliver He, Asiyah Yu Lin
alternative term: SARS COV-2 RT-PCR
definition source: https://www.fda.gov/medical-devices/emergency-situations-medical-devices/emergency-use-authorizations#covid19ivd
definition source: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7170415/
imported from: cido.owl

COVID-19 diagnostic process by viral genome sequencing
type: Class
subclass of: OGMS_0000104
definition: A COVID-19 diagnostic process by viral genome sequencing and identification of the SARS-CoV-2 based on the genome sequence.
definition editor: Oliver He, Asiyah Yu Lin, Hong Yu
definition source: https://www.ncbi.nlm.nih.gov/pubmed/32245835
imported from: cido.owl

cell line cell
type: Class
subclass of: OBI_0001866
editor preferred label: cell line cell
definition: A cultured cell that is part of a cell line - a stable and homogeneous population of cells with a common biological origin and propagation history in culture
definition editor: Yongqun He, Matthew Brush, Sirarat Sarntivijai, Alexander Diehl, Jie Zheng, Yu Lin, Bjoern Peters
imported from: clo.owl
comment: A 'cell line cell' is a part of a cell line established through the passaging/selection of a primary cultured cells or the experimental modification of an existing cell line. New types of cell line cells are established after sufficient passaging of a primary culture to establish a stable and homogenous population that qualifies as a line (typically 1-20 passages), or following some spontaneous or experimental modification that confers novel characteristics to an existing line. A cell line cell typically has mutations of five or more genes compared to the original cell that derives the cell line cell. Some gene mutations may turn on some oncogenes. Cell line cells can be in active culture, stored in a quiescent state for future use (e.g. frozen in liquid nitrogen), or applied in experimental procedures.

immortal cell line cell
type: Class
subclass of: cell line cell
editor preferred label: immortal cell line cell
definition: A cell line cell that is expected to be capable of an unlimited number of divisions, and is thus able to support indefinite propagation in vitro as part of an immortal cell line.
definition editor: Yongqun He, Matthew Brush, Allen Xiang, Asiyah Yu Lin, Sirarat Sarntivijai, James Malone, Jie Zheng, Tomasz Adamusiak
alternative term: continuous cell line cell
alternative term: permanent cell line cell
imported from: clo.owl

cell line
type: Class
subclass of: OBI_0001905
editor preferred label: cell line
definition: A cultured cell population that represents a genetically stable and homogenous population of cultured cells that shares a common propagation history (i.e. has been successively passaged together in culture).
definition editor: MB, SS, JZ, MAH, BP, CS, YH
imported from: clo.owl
comment: The term 'line' is used when a culture has undergone an intentional experimental process to establish a more uniform and stable population of cells (see 'establishing cell line'). This will require one or more passages, but may involve additional selection processes. Through such passaging and/or selection processes, the resulting 'line' attains some level of genetic stability and compositional homogeneity which is typically absent in primary cultures. Because of their relative homogeneity, ‘lines’ are capable of being characterized and stably propagated over a period of time. A new *type* of cell line can be established not only through the passaging/selection of a primary culture, but also through experimental modifications of existing lines (e.g. immortalization, stable genetic modifications, drug selection for a resistant subset, etc.). The definition provided here establishes the 'scale' of cell populations that qualify as cell lines - specifically those with a shared propagation history in culture. In this way, the 'cell line' class demarcates populations that represent what researchers actually use in the practice of science - e.g. as inputs to culturing, experimentation, and sharing. The definition is such that cell lines will exhibit important attributes. For example, they will have a relatively homogenous cell type composition as they have experienced similar selective pressures due to their continuous co-propagation. In addition, these populations can also be characterized by a passage number, again owing to their common passaging history. As defined here, 'cell line' can refer to a population of cells in active culture, applied experimentally, or stored in a quiescent state for future use.

immortal kidney-derived cell line cell
type: Class
subclass of: immortal cell line cell
definition: An immortal cell line cell that derives from kidney.
definition editor: Yue Liu, Yongqun He
imported from: clo.owl

immortal rhesus macaque kidney-derived cell line cell
type: Class
subclass of: immortal kidney-derived cell line cell
definition: An immortal kidney-derived cell line cell that derives from rhesus macaque.
definition editor: Yue Liu, Yongqun He
imported from: clo.owl

LLC-MK subscript(2) cell
type: Class
subclass of: immortal rhesus macaque kidney-derived cell line cell
alternative term: LLC-MK subscript(2)
imported from: clo.owl

cell
type: Class
subclass of: material entity
editor preferred label: cell
definition: A material entity of anatomical origin (part of or deriving from an organism) that has as its parts a maximally connected cell compartment surrounded by a plasma membrane.
imported from: clo.owl
database_cross_reference: CALOHA:TS-2035
database_cross_reference: FMA:68646
database_cross_reference: GO:0005623
database_cross_reference: KUPO:0000002
database_cross_reference: VHOG:0001533
database_cross_reference: WBbt:0004017
database_cross_reference: XAO:0003012
in_subset: upper level
comment: The definition of cell is intended to represent all cells, and thus a cell is defined as a material entity and not an anatomical structure, which implies that it is part of an organism (or the entirety of one).
label: cell type

cultured cell
type: Class
subclass of: experimentally modified cell in vitro
editor preferred label: cultured cell
definition: A cell in vitro that is or has been maintained or propagated as part of a cell culture.
imported from: clo.owl
comment: Note that this class was re-labeled to 'cultured cell' instead of 'cell line cell', as it intent was clarified to cover any cultured cells of multicellular and unicellular organisms. This includes cells actively being cultured, or cells that have been cultured but are stored in a quiescent state for future use. In having been cultured, cells must establish homeostasis and often replicate in a foreign environment. Accomodation of this stress initiates a selection of cells fit for such challenges, wherein necessary adaptive biochemical and.or genetic changes can occur. These changes can set them apart from the in vivo cells from which they derive, and such changes will typically accumulate and change over increasing time in culture.

experimentally modified cell in vitro
type: Class
subclass of: cell in vitro
subclass of: OBI_0000047
editor preferred label: experimentally modified cell in vitro
definition: A cell in vitro that has undergone physical changes as a consequence of a deliberate and specific experimental procedure.
imported from: clo.owl
comment: This class has been re-labeled to imply reference only to in vitro experimentally modified cells, similarly, the definition has been slightly updated to reflect this. 'experimentally modified cell' refers only to cells in vitro, and not modified in vivo/in environment cells. There is currently no class representing unmodified in vitro cells (other than the parent 'cell in vitro'), or a class representing modified native cells. More granular subclassing of experimentally modified cell can be found in ReO. MHB 1.12.12

cell in vitro
type: Class
subclass of: cell
definition: A cell that is maintained or propagated in a controlled artificial environment for use in an investigation.
imported from: clo.owl
comment: 'In vitro', translating literally to 'in glass', typically refers to a controlled, often sterile, laboratory setting where cells or other specimens are placed by some agent for the purpose of studying or manipulating them as part of some research investigation. 'In vitro' is intended to contrast with 'native',which refers to cells or other biological entities that are found in a natural setting. It describes unicellular organisms removed from a natural environement and multicellular organism cells removed from an organism, or cells derived in culture from such displaced cells.

congenital disease
type: Class
subclass of: GENEPIO_0001843
definition: A disease existing at birth, or developping during the first month after birth.
imported from: cvdo.owl

shrimp allergy
type: Class
subclass of: crustacean allergy
definition: A crustacean allergy that has_allergic_trigger shrimp.
imported from: doid.owl

Chlamydia pneumonia
type: Class
subclass of: bacterial pneumonia
definition: A bacterial pneumonia has_material_basis_in Chlamydia pneumoniae.
imported from: doid.owl

Streptococcus pneumonia
type: Class
subclass of: bacterial pneumonia
definition: A bacterial pneumonia has_material_basis_in Streptococcus pneumoniae.
imported from: doid.owl

bacterial sepsis
type: Class
subclass of: bacterial infectious disease
definition: A bacterial infectious disease has_material_basis_in Bacteria.
imported from: doid.owl

seminal vesicle acute gonorrhea
type: Class
subclass of: gonococcal seminal vesiculitis
definition: A gonococcal seminal vesiculitis that is characterized by back pain, perineal pain, pain with ejaculation, hematospermia and voiding symptoms resulting from inflammation located_in the seminal vesicles caused by Neisseria gonorrhoeae infection.
imported from: doid.owl

human granulocytic anaplasmosis
type: Class
subclass of: ehrlichiosis
definition: An ehrlichiosis that results in infection located in granular leukocyte, has_material_basis_in Anaplasma phagocytophilum, which is transmitted by lone star tick (Amblyomma americanum). The infection has symptom headache, has symptom muscle aches, has symptom fatigue, has symptom fever and has symptom rash.
imported from: doid.owl

human monocytic ehrlichiosis
type: Class
subclass of: ehrlichiosis
definition: An ehrlichiosis that results in infection located in monocyte or located in macrophage, has_material_basis_in Ehrlichia chaffeensis, which is transmitted by black-legged tick (Ixodes scapularis), transmitted by western black-legged tick (Ixodes pacificus) or transmitted by castor bean tick (Ixodes ricinus). The infection has symptom headache, has symptom muscle aches, has symptom fatigue, has symptom fever and has symptom rash.
imported from: doid.owl

African tick-bite fever
type: Class
subclass of: spotted fever
definition: A spotted fever that has_material_basis_in Rickettsia africae, which is transmitted_by ticks (Amblyomma hebraeum and Amblyomma variegatum). The infection has_symptom fever, has_symptom eschar and has_symptom maculopapular rash.
imported from: doid.owl

Astrakhan spotted fever
type: Class
subclass of: spotted fever
definition: A spotted fever that has_material_basis_in Rickettsia conorii subsp caspia, which is transmitted_by ticks (Rhipicephalus pumilio and Rhipicephalus sanguineus). The infection has_symptom fever, has_symptom eschar (usually single), has_symptom regional adenopathy, has_symptom maculopapular rash on extremities.
imported from: doid.owl

Indian tick typhus
type: Class
subclass of: spotted fever
definition: A spotted fever that has_material_basis_in Rickettsia conorii subsp indica, which is transmitted_by ticks (Rhipicephalus sanguineus). The infection has_symptom fever, has_symptom eschar, has_symptom regional adenopathy, and has_symptom maculopapular rash on extremities.
imported from: doid.owl

Israeli tick typhus
type: Class
subclass of: spotted fever
definition: A spotted fever that has_material_basis_in Rickettsia conorii subsp israelensis, which is transmitted_by ticks (Rhipicephalus sanguineus). The infection has_symptom fever, has_symptom eschar, has_symptom regional adenopathy, and has_symptom maculopapular rash on extremities.
imported from: doid.owl

Far Eastern spotted fever
type: Class
subclass of: spotted fever
definition: A spotted fever that has_material_basis_in Rickettsia heilongjiangensis, which is transmitted_by ticks (Haemaphysalis concinna). The infection has_symptom fever, has_symptom eschar, has_symptom maculopapular rash, and has_symptom regional adenopathy.
imported from: doid.owl

Flinders Island spotted fever
type: Class
subclass of: spotted fever
definition: A spotted fever that has_material_basis_in Rickettsia honei, which is transmitted_by cayenne ticks (Amblyomma cajennense). The infection has_symptom mild spotted fever, has_symptom eschar and has_symptom adenopathy.
imported from: doid.owl

Japanese spotted fever
type: Class
subclass of: spotted fever
definition: A spotted fever that has_material_basis_in Rickettsia japonica, which is transmitted_by ticks (Dermacentor taiwanensis and Haemaphysalis flava). The infection has_symptom fever, has_symptom eschars, has_symptom regional adenopathy, and has_symptom rash on extremities.
imported from: doid.owl

Rickettsia parkeri spotted fever
type: Class
subclass of: spotted fever
definition: A spotted fever that has_material_basis_in Rickettsia parkeri, which is transmitted_by Gulf Coast tick (Amblyomma maculatum). The infection has_symptom fever, has_symptom headache, has_symptom eschar, and has_symptom rash.
imported from: doid.owl

Rocky Mountain spotted fever
type: Class
subclass of: spotted fever
definition: A spotted fever that has_material_basis_in Rickettsia rickettsii, which is transmitted_by ticks (Dermacentor variabilis and Dermacentor andersoni). The infection has_symptom fever, has_symptom headache, has_symptom abdominal pain, and has_symptom maculopapular rash progressing into papular or petechial rash.
imported from: doid.owl

oropharyngeal anthrax
type: Class
subclass of: gastrointestinal anthrax
definition: A gastrointestinal anthrax that results in infection located in mucosa of oropharynx, has_material_basis_in Bacillus anthracis, which is transmitted by ingestion of anthrax-infected meat. The infection has symptom lesions, has symptom vomiting of blood, has symptom severe diarrhea, has symptom loss of appetite.
imported from: doid.owl

erysipeloid
type: Class
subclass of: primary bacterial infectious disease
definition: A primary bacterial infectious disease that results_in infection located_in skin, has_material_basis_in Erysipelothrix rhusiopathiae, which is transmitted_by contact with infected animals. The infection has_symptom redness of skin, has_symptom tenderness of skin and has_symptom warmth of skin.
imported from: doid.owl

disease by infectious agent
type: Class
subclass of: disease
definition: A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.
imported from: doid.owl

intestinal botulism
type: Class
subclass of: botulism
definition: A botulism that involves intoxication caused by botulinum neurotoxins (BoNTA, B, E and F) in adults, has_material_basis_in Clostridium botulinum A, has_material_basis_in Clostridium botulinum B, has_material_basis_in Clostridium botulinum E and has_material_basis_in Clostridium botulinum F, which are transmitted by ingestion of bacterial spores, which then grow in the intestine and release toxins.
imported from: doid.owl

Pontiac fever
type: Class
subclass of: legionellosis
definition: A legionellosis that involves a milder respiratory illness without pneumonia. Symptoms include fever, headache and muscle aches which last for 2 to 5 days.
imported from: doid.owl

aspiration pneumonia
type: Class
subclass of: bacterial pneumonia
definition: A bacterial pneumonia which is an acute pulmonary inflammatory response that develops after the inhalation of colonized oropharyngeal material containing bacteria. It is seen in individuals with dysphagia and gastric dysmotility. The disease has_symptom tachypnea and has_symptom cough.
imported from: doid.owl

sensory system disease
type: Class
subclass of: nervous system disease
definition: A nervous system disease which is located in a part of the nervous system responsible for processing sensory information that consists of sensory receptors, neural pathways, and parts of the brain involved in sensory perception. Commonly recognized sensory systems are those for vision, hearing, somatic sensation (touch), taste and olfaction (smell).
imported from: doid.owl

inhalation anthrax
type: Class
subclass of: anthrax disease
definition: An anthrax disease that results in infection located in lung lymph nodes brought on by breathing in the spores of the bacteria Bacillus anthracis. The first symptoms of inhalation anthrax are like cold or flu symptoms and can include a sore throat, mild fever and muscle aches. Later symptoms include cough, chest discomfort, shortness of breath, tiredness and muscle aches.
imported from: doid.owl

lower respiratory tract disease
type: Class
subclass of: respiratory system disease
definition: A respiratory system disease which involves the lower respiratory tract.
imported from: doid.owl

tuberculous salpingitis
type: Class
subclass of: fallopian tube disease
subclass of: urogenital tuberculosis
definition: An urogenital tuberculosis that results_in formation of granulomas located_in fallopian tube.
imported from: doid.owl

primary bacterial infectious disease
type: Class
subclass of: bacterial infectious disease
definition: A bacterial infectious disease that results_in infection by bacteria as a result of their presence or activity within the normal, healthy host, and their intrinsic virulence is, in part, a necessary consequence of their need to reproduce and spread.
imported from: doid.owl

commensal bacterial infectious disease
type: Class
subclass of: bacterial infectious disease
definition: A bacterial infectious disease that results_in infection by bacteria which are part of the normal human flora when one or more of the defense mechanisms designed to restrict them from the usually sterile internal tissues are breached by accident, by intent (surgery), or by an underlying metabolic or an infectious disorder.
imported from: doid.owl

opportunistic bacterial infectious disease
type: Class
subclass of: bacterial infectious disease
definition: A bacterial infectious disease that results_in infection by bacteria in individuals whose host defense mechanisms have been compromised.
imported from: doid.owl

foodborne botulism
type: Class
subclass of: botulism
definition: A botulism that involves intoxication caused by botulinum neurotoxins (BoNTA, B, E and F), which are transmitted by ingestion of food contaminated with preformed toxins, has_material_basis_in Clostridium botulinum A, has_material_basis_in Clostridium botulinum B, has_material_basis_in Clostridium botulinum E and has_material_basis_in Clostridium botulinum F. The infection has symptom blurred vision, has symptom diplopia, has symptom dysarthria, has symptom dysphonia, has symptom dysphagia and has symptom descending muscle paralysis.
imported from: doid.owl

wound botulism
type: Class
subclass of: botulism
definition: A botulism that involves intoxication caused by botulinum neurotoxins (BoNTA, B, E and F), has_material_basis_in Clostridium botulinum A, has_material_basis_in Clostridium botulinum B, has_material_basis_in Clostridium botulinum E and has_material_basis_in Clostridium botulinum F, which are transmitted by contact of spores with the open wounds, which then reproduce in an anaerobic environment to produce toxins.
imported from: doid.owl

infant botulism
type: Class
subclass of: botulism
definition: A botulism that involves intoxication caused by botulinum neurotoxins (BoNTA or B) in infants, has_material_basis_in Clostridium botulinum A or has_material_basis_in Clostridium botulinum B, which are transmitted_by ingestion of bacterial spores, which then grow in the intestine and release toxins. The infection has_symptom constipation, has_symptom lethargy, has_symptom difficulty feeding, has_symptom swallowing, has_symptom ptosis, has_symptom loss of head control, and has_symptom muscle weakness.
imported from: doid.owl

glandular tularemia
type: Class
subclass of: tularemia
definition: A tularemia that results_in swelling of regional lymph glands.
imported from: doid.owl

typhoidal tularemia
type: Class
subclass of: tularemia
definition: A tularemia that results_in bacteremia and has_symptom fever, has_symptom chills, has_symptom myalgia, has_symptom malaise, and has_symptom weight loss.
imported from: doid.owl

Carrion's disease
type: Class
subclass of: bartonellosis
definition: A bartonellosis that results_in infection located_in endothelial cells or located_in red blood cells, has_material_basis_in Bartonella bacilliformis, which is transmitted_by sandflies of genus Lutzomyia. The infection has acute and chronic phases. The acute phase is characterized by severe hemolytic anemia and transient immunosuppression. The chronic phase is characterized by verruga peruana lesions which may ulcerate and bleed.
imported from: doid.owl

Buruli ulcer disease
type: Class
subclass of: primary bacterial infectious disease
definition: A primary bacterial infectious disease that results_in infection located_in skin or located_in subcutaneous tissue, has_material_basis_in Mycobacterium ulcerans, which could be transmitted_by insects. The bacterium produces a toxin, named mycolactone, which causes subcutaneous fat necrosis and inhibits an immune response. The infection has_symptom nodule, which is a painless, mobile swelling in the skin.
imported from: doid.owl

epidemic typhus
type: Class
subclass of: typhus
definition: A typhus that has_material_basis_in Rickettsia prowazekii, which is transmitted by human body louse (Pediculus humanus corporis). The infection has_symptom high fever, has_symptom cough, has_symptom rash, has_symptom severe muscle pain, has_symptom chills, has_symptom falling blood pressure, has_symptom stupor, has_symptom sensitivity to light, and has_symptom delirium.
imported from: doid.owl

endemic typhus
type: Class
subclass of: typhus
definition: A typhus that has_material_basis_in Rickettsia typhi or has_material_basis_in Rickettsia felis, which are transmitted by fleas (Xenopsylla cheopis). The infection has symptom headache, has symptom fever, has symptom chills, has symptom myalgia, has symptom nausea, has symptom vomiting, has symptom cough and has symptom rash.
imported from: doid.owl

aneruptive fever
type: Class
subclass of: spotted fever
definition: A spotted fever that has_material_basis_in Rickettsia helvetica, which is transmitted_by ticks (Ixodes sp). The infection has_symptom fever, has_symptom headache, has_symptom myalgia.
imported from: doid.owl

sennetsu fever
type: Class
subclass of: primary bacterial infectious disease
definition: A primary bacterial infectious disease that results_in infection, has_material_basis_in Neorickettsia sennetsu, which is transmitted_by ingestion of raw or under-cooked gray mullet fish infected with the trematodes. The infection has_symptom fever, has_symptom malaise, has_symptom anorexia, has_symptom lymphadenopathy, has_symptom hepatosplenomegaly, has_symptom fatigue, has_symptom chills, has_symptom headache, has_symptom backache and has_symptom myalgia.
imported from: doid.owl

exanthem
type: Class
subclass of: skin disease
definition: A skin disease that is characterized by a rash that results from a variety of causes including bacteria, viruses, toxins, drugs and autoimmune disorders.
imported from: doid.owl

bacterial exanthem
type: Class
subclass of: exanthem
subclass of: bacterial infectious disease
definition: An exanthem that is characterized by a diffuse, reddened, blanchable, finely papular, sandpaper like rash due to infection by group A streptococcus and the production of an erythrogenic toxin.
imported from: doid.owl

early congenital syphilis
type: Class
subclass of: congenital syphilis
definition: A congenital syphilis that is manifested during the first 3 months of life. The infection has_symptom skin lesions, has_symptom lymphadenopathy, has_symptom hepatosplenomegaly, has_symptom failure to thrive, has_symptom blood-stained nasal discharge, has_symptom perioral fissures, has_symptom meningitis, has_symptom choroiditis, has_symptom hydrocephalus, has_symptom seizures, has_symptom intellectual disability, has_symptom osteochondritis, and has_symptom pseudoparalysis.
imported from: doid.owl

parenchymatous neurosyphilis
type: Class
subclass of: tertiary neurosyphilis
definition: A tertiary neurosyphilis that results when chronic meningoencephalitis causes destruction of cortical parenchyma. The infection has_symptom irritability, has_symptom difficulty concentrating, has_symptom deterioration of memory, has_symptom defective judgment, has_symptom headaches, has_symptom insomnia, has_symptom fatigue, and has_symptom lethargy.
imported from: doid.owl

meningovascular neurosyphilis
type: Class
subclass of: tertiary neurosyphilis
definition: A tertiary neurosyphilis that results in inflammation located_in arteries of the brain or located_in arteries of spinal cord. The infection has_symptom headache, has_symptom neck stiffness, has_symptom dizziness, has_symptom behavioral abnormalities, has _symptom poor concentration, has_symptom memory loss, has _symptom lassitude, has_symptom insomnia, has_symptom blurred vision, has_symptom weakness and wasting of shoulder-girdle and arm muscles, has_symptom slowly progressive leg weakness with urinary or fecal incontinence or both, and has_symptom paralysis of the legs due to thrombosis of spinal arteries.
imported from: doid.owl

gummatous syphilis
type: Class
subclass of: tertiary syphilis
definition: A tertiary syphilis that is characterized by granulomatous lesions, called gummas, which are characterized by a center of necrotic tissue with a rubbery texture. They form in the liver, bones, and testes but may affect any organ.
imported from: doid.owl

inflammatory bowel disease
type: Class
subclass of: intestinal disease
definition: An intestinal disease characterized by inflammation located in all parts of digestive tract.
imported from: doid.owl

extrapulmonary tuberculosis
type: Class
subclass of: tuberculosis
definition: A tuberculosis that occurs at body sites other than the lung.
imported from: doid.owl

abdominal tuberculosis
type: Class
subclass of: extrapulmonary tuberculosis
definition: An extrapulmonary tuberculosis that is located_in gastrointestinal tract, located_in peritoneum, located_in omentum, located_in mesentery, located_in liver, located_in spleen or located_in pancreas.
imported from: doid.owl

organ system cancer
type: Class
subclass of: cancer
definition: A cancer that is classified based on the organ it starts in.
imported from: doid.owl

cardiomyopathy
type: Class
subclass of: heart disease
definition: A heart disease and a myopathy that is characterized by deterioration of the function of the heart muscle.
imported from: doid.owl

endocardium disease
type: Class
subclass of: heart disease
definition: A heart disease that is located_in the innermost layer of tissue that lines the chambers of the heart.
imported from: doid.owl

pericardium disease
type: Class
subclass of: thoracic disease
subclass of: cardiovascular system disease
definition: A cardiovascular system disease that is located_in the fibrous sac surrounding the heart.
imported from: doid.owl

infective endocarditis
type: Class
subclass of: endocarditis
subclass of: bacterial infectious disease
subclass of: fungal infectious disease
definition: An endocarditis that is characterized by inflammation of the endocardium caused by infectious agents.
imported from: doid.owl

autoimmune disease of gastrointestinal tract
type: Class
subclass of: autoimmune disease
subclass of: gastrointestinal system disease
definition: An autoimmune disease that is the abnormal functioning of the immune system that causes your immune system to produce antibodies or T cells against cells and/or tissues in the gastrointestinal tract.
imported from: doid.owl

gluten allergy
type: Class
subclass of: food allergy
definition: A food allergy that develops from an immune reaction to eating gluten, a protein found in wheat, barley, rye and triticale and that is characterized by stomach cramping, diarrhea and gastrointestinal upset and is unrelated to the gluten intolerance.
imported from: doid.owl

thoracic disease
type: Class
subclass of: disease of anatomical entity
definition: A disease of anatomical entity that is located_in the thoracic cavity.
imported from: doid.owl

colitis
type: Class
subclass of: inflammatory bowel disease
definition: An inflammatory bowel disease that involves inflammation located_in colon.
imported from: doid.owl

bacillary angiomatosis
type: Class
subclass of: bartonellosis
definition: A bartonellosis that has_material_basis_in Bartonella henselae or has_material_basis_in Bartonella quintana. The disease is characterized by the proliferation of blood vessels, resulting in them forming tumour-like masses in the skin and other organs.
imported from: doid.owl

chicken egg allergy
type: Class
subclass of: egg allergy
definition: An egg allergy triggered by Gallus gallus eggs.
imported from: doid.owl

shellfish allergy
type: Class
subclass of: food allergy
definition: A food allergy triggered by Crustacea or Mollusca.
imported from: doid.owl

gastrointestinal allergy
type: Class
subclass of: allergic disease
definition: An allergic disease that is located_in the gastrointestinal tract.
imported from: doid.owl

fruit allergy
type: Class
subclass of: food allergy
definition: A food allergy triggered by a plant fruit product.
imported from: doid.owl

apple allergy
type: Class
subclass of: fruit allergy
definition: A fruit allergy triggered by Malus domestica plant fruit food product.
imported from: doid.owl

apricot allergy
type: Class
subclass of: fruit allergy
definition: A fruit allergy triggered by Prunus armeniaca plant fruit food product.
imported from: doid.owl

cherry allergy
type: Class
subclass of: fruit allergy
definition: A fruit allergy triggered by Prunus avium plant fruit food product.
imported from: doid.owl

Indian plum allergy
type: Class
subclass of: fruit allergy
definition: A fruit allergy triggered by Ziziphus mauritiana plant fruit food product.
imported from: doid.owl

orange allergy
type: Class
subclass of: fruit allergy
definition: A fruit allergy triggered by Citrus sinensis plant fruit food product.
imported from: doid.owl

melon allergy
type: Class
subclass of: fruit allergy
definition: A fruit allergy triggered by Cucumis melo plant fruit food product.
imported from: doid.owl

peach allergy
type: Class
subclass of: fruit allergy
definition: A fruit allergy triggered by Prunus persica plant fruit food product.
imported from: doid.owl

plum allergy
type: Class
subclass of: fruit allergy
definition: A fruit allergy triggered by Prunus domestica plant fruit food product.
imported from: doid.owl

tomato allergy
type: Class
subclass of: fruit allergy
definition: A fruit allergy triggered by Solanum lycopersicum plant fruit food product.
imported from: doid.owl

fish allergy
type: Class
subclass of: food allergy
definition: A food allergy triggered by fish.
imported from: doid.owl

Atlantic cod allergy
type: Class
subclass of: fish allergy
definition: A fish allergy triggered by Gadus morhua.
imported from: doid.owl

Atlantic salmon allergy
type: Class
subclass of: fish allergy
definition: A fish allergy triggered by Salmo salar.
imported from: doid.owl

carp allergy
type: Class
subclass of: fish allergy
definition: A fish allergy triggered by Cyprinus carpio.
imported from: doid.owl

zebrafish allergy
type: Class
subclass of: fish allergy
definition: A fish allergy triggered by Danio rerio.
imported from: doid.owl

rainbow trout allergy
type: Class
subclass of: fish allergy
definition: A fish allergy triggered by Oncorhynchus mykiss.
imported from: doid.owl

cow milk allergy
type: Class
subclass of: milk allergy
definition: A milk allergy triggered by Bos taurus milk.
imported from: doid.owl

goat milk allergy
type: Class
subclass of: milk allergy
definition: A milk allergy triggered by Capra hircus milk.
imported from: doid.owl

mollusc allergy
type: Class
subclass of: shellfish allergy
definition: A shellfish allergy triggered by Mollusca.
imported from: doid.owl

crustacean allergy
type: Class
subclass of: shellfish allergy
definition: A shellfish allergy triggered by Crustacea.
imported from: doid.owl

brown shrimp allergy
type: Class
subclass of: shrimp allergy
definition: A crustacean allergy triggered by Farfantepenaeus aztecus.
imported from: doid.owl

crab allergy
type: Class
subclass of: crustacean allergy
definition: A crustacean allergy triggered by Scylla paramamosain.
imported from: doid.owl

Indian prawn allergy
type: Class
subclass of: shrimp allergy
definition: A crustacean allergy triggered by Fenneropenaeus indicus.
imported from: doid.owl

tiger prawn allergy
type: Class
subclass of: shrimp allergy
definition: A crustacean allergy triggered by Penaeus monodon.
imported from: doid.owl

white shrimp allergy
type: Class
subclass of: shrimp allergy
definition: A crustacean allergy triggered by Litopenaeus vannamei.
imported from: doid.owl

snail allergy
type: Class
subclass of: mollusc allergy
definition: A mollusc allergy triggered by snails.
imported from: doid.owl

horned turban snail allergy
type: Class
subclass of: snail allergy
definition: A snail allergy triggered by the horned turban snail.
imported from: doid.owl

spinal disease
type: Class
subclass of: bone disease
definition: A bone disease that is located_in the spine.
imported from: doid.owl

cardiac tuberculosis
type: Class
subclass of: heart disease
subclass of: tuberculosis
definition: A tuberculosis located in the heart.
imported from: doid.owl

chronic recurrent multifocal osteomyelitis
type: Class
subclass of: spinal disease
subclass of: osteomyelitis
definition: An osteomyelitis characterized by multiple foci of painful swelling of bones, mainly in the metaphyses of the long bones, in addition to the pelvis, the shoulder girdle and the spine.
imported from: doid.owl

salmonellosis
type: Class
subclass of: primary bacterial infectious disease
definition: A primary bacterial infectious disease caused by the bacteria of the genus Salmonella. It has symptoms diarrhea, fever, vomiting, and abdominal cramps 12 to 72 hours after infection. In most cases, the illness lasts four to seven days, and most people recover without treatment.
imported from: doid.owl

legume allergy
type: Class
subclass of: fruit allergy
definition: A fruit allergy triggered by Fabaceae (legume) plant fruit or seed food product.
imported from: doid.owl

vegetable allergy
type: Class
subclass of: food allergy
definition: A food allergy triggered by a vegetable food product.
imported from: doid.owl

celery allergy
type: Class
subclass of: vegetable allergy
definition: A vegetable allergy triggered by celery (Apium graveolens).
imported from: doid.owl

ocular tuberculosis
type: Class
subclass of: tuberculosis
subclass of: eye disease
definition: A tuberculosis that is located_in some eye, has_material_basis_in Mycobacterium tuberculosis, and has_symptom inflamed eyes.
imported from: doid.owl

Borrelia miyamotoi disease
type: Class
subclass of: primary bacterial infectious disease
definition: A primary bacterial infectious disease that has_material_basis_in Borrelia miyamotoi, which is transmitted_by the blacklegged tick (Ixodes scapularis), the western blacklegged tick (Ixodes pacificus), the taiga tick (Ixodes persulcatus), or the castor bean tick (Ixodes ricinus). The infection has_symptom fever, headache, chills, muscle pain, joint pain, asthenia, fatigue and nausea, and rarely relapses.
imported from: doid.owl

cepacia syndrome
type: Class
subclass of: opportunistic bacterial infectious disease
definition: An opportunistic bacterial infectious disease characterized by necrotizing pneumonia, acute respiratory distress syndrome, and bacteremia that has_material_basis_in Burkholderia cepacia complex, which is transmitted_by contact transmission, droplet spread transmission, vehicle-borne fomite transmission, and vehicle-borne ingestion transmission.
imported from: doid.owl

muscular disease
type: Class
subclass of: musculoskeletal system disease
definition: A musculoskeletal system disease that affects the muscles.
imported from: doid.owl

bone disease
type: Class
subclass of: connective tissue disease
definition: A connective tissue disease that affects the structure or development of bone or causes an impairment of normal bone function.
imported from: doid.owl

physical disorder
type: Class
subclass of: disease
definition: A disease that has_material_basis_in a genetic abnormality, error with embryonic development, infection or compromised intrauterine environment.
imported from: doid.owl

meningococcal meningitis
type: Class
subclass of: bacterial meningitis
definition: A bacterial meningitis that has_material_basis_in Neisseria meningitidis infection.
imported from: doid.owl

haemophilus meningitis
type: Class
subclass of: bacterial meningitis
definition: A bacterial meningitis that has_material_basis_in Haemophilus influenzae infection.
imported from: doid.owl

epididymis disease
type: Class
subclass of: male reproductive system disease
definition: A male reproductive system disease that is located_in the epididymis.
imported from: doid.owl

Coronavirus infectious disease
type: Class
subclass of: viral infectious disease
definition: A viral infectious disease that has_material_basis_in Coronavirus.
imported from: doid.owl

urinary tract infection
type: Class
subclass of: bacterial infectious disease
subclass of: urinary system disease
definition: An urinary system disease that is characterized by an infection in any part of the urinary system, including the kidneys, ureters, bladder or urethra.
imported from: doid.owl

tuberculous encephalopathy
type: Class
subclass of: tuberculosis
definition: A tuberculosis that is characterized by cerebral edema sometimes with features similar to acute disseminated encephalomyelitis (ADEM) and may manifest with a variety of symptoms ranging from focal neurological deficits to convulsions and decreased conscious state.
imported from: doid.owl

parsley allergy
type: Class
subclass of: vegetable allergy
definition: A vegetable allergy triggered by parsley (Petroselinum).
imported from: doid.owl

dill allergy
type: Class
subclass of: vegetable allergy
definition: A food allergy triggered by dill (Anethum graveolens).
imported from: doid.owl

injection anthrax
type: Class
subclass of: anthrax disease
definition: An anthrax disease that is characterized by infection at the injection site or deep under the skin or in the muscle where the drug was injected and is caused by heroin contaminated with anthrax spores.
imported from: doid.owl

tabes dorsalis
type: Class
subclass of: tertiary neurosyphilis
definition: A tertiary neurosyphilis that results in slow degeneration of the nerve cells and nerve fibers that carry sensory information to the brain. The infection has symptom intense, stabbing pain in the back and legs that recurs irregularly, has symptom gait ataxia, has symptom hyperesthesia, has symptom paresthesia, has symptom loss of bladder sensation leading to urine retention, has symptom erectile dysfunction.
imported from: doid.owl

pelvic inflammatory disease
type: Class
subclass of: bacterial infectious disease
subclass of: female reproductive system disease
definition: A female reproductive system disease that is characterized by an infection of the female reproductive organs.
imported from: doid.owl

asymptomatic neurosyphilis
type: Class
subclass of: tertiary neurosyphilis
definition: A tertiary neurosyphilis that results_in mild meningitis.
imported from: doid.owl

late congenital syphilis
type: Class
subclass of: congenital syphilis
definition: A congenital syphilis that occurs in children at or greater than two years of age who acquired the infection trans-placentally. The infection has_symptom gummatous ulcers, has_symptom periosteal lesions, has_symptom paresis, has_symptom tabes, has_symptom optic atrophy, has_symptom interstitial keratitis, has_symptom sensorineural deafness, and has_symptom dental deformities.
imported from: doid.owl

syphilitic meningitis
type: Class
subclass of: bacterial meningitis
definition: A bacterial meningitis that is characterized by inflammation of the tissues covering the brain and spinal cord.
imported from: doid.owl

osteomyelitis
type: Class
subclass of: bacterial infectious disease
subclass of: fungal infectious disease
subclass of: bone inflammation disease
definition: A bone inflammation disease that has_material_basis_in infection located_in bone or located_in bone marrow.
imported from: doid.owl

pinta disease
type: Class
subclass of: primary bacterial infectious disease
definition: A primary bacterial infectious disease that results_in infection located_in skin, has_material_basis_in Treponema carateum, which is transmitted_by contact with skin and mucous membrane of an infected person. The infection has_symptom pruritic plaque, which slowly enlarges and becomes pigmented and hyperkeratotic.
imported from: doid.owl

borderline leprosy
type: Class
subclass of: leprosy
definition: A leprosy that results in small numerous red irregularly shaped plaques.
imported from: doid.owl

leprosy
type: Class
subclass of: primary bacterial infectious disease
definition: A primary bacterial infectious disease that results_in infection located_in superficial peripheral nerves, located_in skin, located_in mucous membranes of the upper respiratory tract, located_in anterior chamber of the eyes, or located_in testes, has_material_basis_in Mycobacterium leprae, which is transmitted_by aerosol spread from infected nasal secretions to exposed nasal and oral mucosa. The infection has_symptom skin lesions, has_symptom sensory loss, has_symptom motor loss and has_symptom eye damage.
imported from: doid.owl

ehrlichiosis
type: Class
subclass of: primary bacterial infectious disease
definition: A primary bacterial infectious disease that results in infection located_in leukocyte, has_material_basis_in Ehrlichia chaffeensis or Anaplasma phagocytophilum, which are transmitted_by lone star tick and transmitted_by black-legged tick respectively. The infection has_symptom headache, has_symptom muscle aches, has_symptom fatigue and has_symptom rash.
imported from: doid.owl

tuberculoid leprosy
type: Class
subclass of: leprosy
definition: A leprosy that results in one erythematous large plaque with well-defined borders that are elevated and that slope down into an atrophic center.
imported from: doid.owl

endocarditis
type: Class
subclass of: endocardium disease
definition: A endocardium disease characterized by inflammation of the endocardium of the heart chambers and valves.
imported from: doid.owl

yaws
type: Class
subclass of: primary bacterial infectious disease
definition: A primary bacterial infectious disease that results in infection located in skin, located in joint or located in bone, has_material_basis_in Treponema pallidum subsp pertenue, which is transmitted by direct skin contact with an infected person. The infection has symptom skin lesions.
imported from: doid.owl

pneumonic plague
type: Class
subclass of: plague
subclass of: lung disease
definition: A plague that results_in infection located_in lung, which results from direct inhalation of the bacillus and has_symptom fever, has_symptom chills, has_symptom cough and has_symptom difficulty breathing.
imported from: doid.owl

seminal vesicle chronic gonorrhea
type: Class
subclass of: gonococcal seminal vesiculitis
imported from: doid.owl

bacterial infectious disease
type: Class
subclass of: disease by infectious agent
definition: A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
imported from: doid.owl

gonococcal seminal vesiculitis
type: Class
subclass of: gonorrhea
subclass of: vesiculitis
imported from: doid.owl

Legionnaires' disease
type: Class
subclass of: legionellosis
definition: A legionellosis that is characterized by severe form of infection producing pneumonia. Symptoms include fever, chills, and cough.
imported from: doid.owl

legionellosis
type: Class
subclass of: primary bacterial infectious disease
definition: A primary bacterial infectious disease that results_in infection located_in respiratory tract, has_material_basis_in Legionella pneumophila, which is transmitted_by inhalation of droplets containing bacteria. The symptoms include dry cough, fever, headache and diarrhea.
imported from: doid.owl

late yaws
type: Class
subclass of: yaws
definition: A yaws that appears after five years of the initial infection and is characterized by disabling consequences of the nose, bones and palmar/plantar hyperkeratosis.
imported from: doid.owl

early yaws
type: Class
subclass of: yaws
definition: A yaws that results in initial papule at the site of entry of bacteria. Without treatment, this is followed by disseminated skin lesions over the body. Bone pain and bone lesions may also occur.
imported from: doid.owl

pleural tuberculosis
type: Class
subclass of: extrapulmonary tuberculosis
subclass of: allergic disease
subclass of: pleural disease
definition: An extrapulmonary tuberculosis that results_in lymphocyte-predominant exudative pleural effusion, located_in pleura. This results from an allergic response to tuberculoprotein causing the permeabiltity of the pleural vasculature to alter leading to a sub-pleural caseous focus rupture into the pleural sac.
imported from: doid.owl

mastitis
type: Class
subclass of: antimicrobial resistance tissue specificity
subclass of: breast disease
definition: A breast disease characterized by painful infection of the breast tissue.
imported from: doid.owl

petrositis
type: Class
subclass of: osteomyelitis
definition: An osteomyelitis that has_material_basis_in infection located_in petrous part of temporal bone.
imported from: doid.owl

bubonic plague
type: Class
subclass of: plague
subclass of: lymph node disease
definition: A plague that results_in infection located_in lymph node producing a bubo, which is an inflamed, necrotic, and hemorrhagic lymphoid tissue. The infection has_symptom enlarged, tender lymph nodes, has_symptom fever, has_symptom chills and has_symptom prostration.
imported from: doid.owl

Queensland tick typhus
type: Class
subclass of: spotted fever
definition: A spotted fever that has_material_basis_in Rickettsia australis, which is transmitted_by ticks (Ixodes holocyclus). The infection has_symptom fever, has_symptom headache, has_symptom myalgia, has_symptom maculopapular rash, and has_symptom lymphadenopathy.
imported from: doid.owl

lepromatous leprosy
type: Class
subclass of: leprosy
definition: A leprosy that results in early cutaneous lesions which consist of pale macules that are small, diffuse, and symmetric. This form of leprosy is characterized by hypoesthesia over extensor surfaces of the distal extremities, alopecia affecting lateral aspects of the eyebrows, saddle-nose deformity and oral lepromas.
imported from: doid.owl

Siberian tick typhus
type: Class
subclass of: spotted fever
definition: A spotted fever that has_material_basis_in Rickettsia sibirica, which is transmitted_by ticks (Dermacentor nuttalli, Dermacentor marginatus and Haemaphysalis concinna). The infection has_symptom fever, has_symptom eschar, has_symptom regional adenopathy, and has_symptom maculopapular rash.
imported from: doid.owl

ovarian disease
type: Class
subclass of: gonadal disease
subclass of: female reproductive system disease
definition: A female reproductive system disease that is located_in the ovary.
imported from: doid.owl

pasteurellosis
type: Class
subclass of: primary bacterial infectious disease
definition: A primary bacterial infectious disease that results_in systemic infection, has_material_basis_in Pasteurella multocida, which is transmitted_by animal bite, scratch, or lick. The infection has_symptom joint pain has_symptom fever, has_symptom rigors, has_symptom pneumonia, has_symptom meningeal irritation, and has_symptom tachycardia.
imported from: doid.owl

Brucella suis brucellosis
type: Class
subclass of: brucellosis
definition: A brucellosis that involves an infection caused by Brucella suis [NCBITaxon:29461] in swine and humans. The disease has_symptom fever, has_symptom chills, has_symptom malaise, has_symptom diaphoresis, has_symptom arthralgia, has_symptom myalgia, has_symptom headache, has_symptom anorexia, and has_symptom fatigue.
imported from: doid.owl

brucellosis
type: Class
subclass of: primary bacterial infectious disease
definition: A primary bacterial infectious disease that is caused by the bacteria of the genus Brucella, when humans come in contact with contaminated animals or animal products or ingestion of infected food products. The disease has_symptom fever, has_symptom sweat, has_symptom headache, has_symptom back pain, has_symptom physical weakness, has_symptom joint pain and has_symptom fatigue.
imported from: doid.owl

Q fever
type: Class
subclass of: primary bacterial infectious disease
definition: A primary bacterial infectious disease that is a zoonotic infectious disease affecting multiple organs, has_material_basis_in Coxiella burnetii, which is transmitted_by inhalation of air contaminated by barnyard dust containing dried placental material, birth fluids, or excreta of infected herd animals, transmitted_by ingestion of contaminated milk, transmitted_by tick bites and transmitted_by contact with infected person. The infection has_symptom fever, has_symptom headache, has_symptom cough, has_symptom pleuritic chest pain, has_symptom myalgia and has_symptom arthralgia.
imported from: doid.owl

trench fever
type: Class
subclass of: bartonellosis
definition: A primary bacterial infectious disease that results in systemic infection, has_material_basis_in Bartonella quintana, which is transmitted by body lice (Pediculus humanus corporis). The infection has symptom relapsing fever, has symptom headache, has symptom shin pain, and has symptom soreness of the muscles of the legs and back.
imported from: doid.owl

bartonellosis
type: Class
subclass of: primary bacterial infectious disease
definition: A primary bacterial infectious disease that is caused by the bacteria of the genus Bartonella.
imported from: doid.owl

rickettsialpox
type: Class
subclass of: spotted fever
definition: A spotted fever that has_material_basis_in Rickettsia akari, which is transmitted_by house mouse mite (Liponyssoides sanguineus) found on mice and other rodents. The infection has_symptom fever, has_symptom chills, has_symptom headache, has_symptom myalgia, and has_symptom papulovesicular rash.
imported from: doid.owl

spotted fever
type: Class
subclass of: primary bacterial infectious disease
definition: A primary bacterial infectious disease that results in infection, located in endothelial cell of artery or located in endothelial cell of vein, has_material_basis_in Rickettsia, which is transmitted by ticks and mites. The infection has symptom fever, has symptom headache, has symptom fatigue, has symptom muscle aches, and has symptom maculopapular or petechial rash. A distinctive eschar (blackened or crusted skin) may develop at the site of a tick bite.
imported from: doid.owl

pertussis
type: Class
subclass of: commensal bacterial infectious disease
definition: A commensal bacterial infectious disease that results_in inflammation located_in respiratory tract, has_material_basis_in Bordetella pertussis, or has_material_basis_in Bordetella parapertussis, which produce toxins that paralyze the cilia of the respiratory epithelial cells. The infection is characterized by a prolonged, high-pitched, deeply indrawn breath (whoop).
imported from: doid.owl

respiratory failure
type: Class
subclass of: lung disease
definition: A lung disease characterized by inadequate gas exchange by the respiratory system.
imported from: doid.owl

disseminated intravascular coagulation
type: Class
subclass of: thrombophilia
imported from: doid.owl

Brill-Zinsser disease
type: Class
subclass of: epidemic typhus
definition: An epidemic typhus that is a mild form of the disease, which recurs in someone after a long period of latency due to immunosuppression, malnutrition or other illnesses.
imported from: doid.owl

typhus
type: Class
subclass of: primary bacterial infectious disease
definition: A primary bacterial infectious disease that refers to a group of diseases, located in endothelial cells of the small venous, arterial, and capillary vessels, has_material_basis_in Rickettsia bacteria, which are transmitted by lice, transmitted by fleas, and transmitted by mites.
imported from: doid.owl

cat-scratch disease
type: Class
subclass of: bartonellosis
subclass of: lymph node disease
definition: A bartonellosis that results_in infection located_in lymph node, has_material_basis_in Bartonella henselae or has_material_basis_in Bartonella clarridgeiae, which are transmitted_by scratch or bite of a kitten, or transmitted_by contact of animal's saliva with an eye or through broken skin. The infection has_symptom regional lymphadenopathy, has_symptom headache, has_symptom chills, has_symptom backache, and has_symptom abdominal pain.
imported from: doid.owl

ornithosis
type: Class
subclass of: primary bacterial infectious disease
definition: A primary bacterial infectious disease that results_in systemic infection, has_material_basis_in Chlamydia psittaci, which is transmitted_by inhaling aerosolized dried droppings or transmitted_by contact with infected birds. The infection has_symptom fever, has_symptom headache, has_symptom rash, has_symptom chills, and has_symptom pneumonia.
imported from: doid.owl

chlamydia
type: Class
subclass of: commensal bacterial infectious disease
definition: A commensal bacterial infectious disease that is caused by Chlamydia trachomatis.
imported from: doid.owl

trachoma
type: Class
subclass of: commensal bacterial infectious disease
subclass of: eye disease
definition: A commensal bacterial infectious disease that results_in infection located_in eye, has_material_basis_in Chlamydia trachomatis (A, B, Ba and C serovars), which is transmitted_by contact with eye discharge from the infected person and transmitted_by congenital method. The infection causes eyelid to turn inward which makes eyelashes to scratch the cornea.
imported from: doid.owl

rhinoscleroma
type: Class
subclass of: primary bacterial infectious disease
definition: A primary bacterial infectious disease that involves the inflammation of mucosa lining the nasal cavity, pharynx, larynx, trachea and bronchi that is characterized by the formation of granulomas, dense induration of the tissues and nodular deformity caused by Klebsiella rhinoscleromatis.
imported from: doid.owl

Lemierre's syndrome
type: Class
subclass of: commensal bacterial infectious disease
definition: A commensal bacterial infectious disease that is characterized by systemic sepsis, ulcerative or necrotic lesions and multisystem abscesses caused by Fusobacterium necrophorum. The disease often first presents as a severe tonsillitis or pharyngitis with high-grade fever and chills together with leukocytosis, cervical pain and neck swelling.
imported from: doid.owl

tetanus
type: Class
subclass of: primary bacterial infectious disease
definition: A primary bacterial infectious disease that results in prolonged contraction of skeletal muscle fibers, has_material_basis_in Clostridium tetani, which produces tetanospasmin, a neurotoxin, which is carried to the brain and spinal cord, where it binds irreversibly to receptors inhibiting neurotransmission. Damaged upper motor neurons cannot control reflex responses to afferent sensory stimuli.
imported from: doid.owl

adult respiratory distress syndrome
type: Class
subclass of: respiratory failure
definition: A respiratory failure that results from diffuse injury to the endothelium of the lung (as in sepsis, chest trauma, massive blood transfusion, aspiration of the gastric contents, or pneumonia) and is characterized by pulmonary edema with an abnormally high amount of protein in the edematous fluid and by difficult rapid breathing and hypoxemia.
imported from: doid.owl

heart disease
type: Class
subclass of: thoracic disease
subclass of: cardiovascular system disease
definition: A cardiovascular system disease that involves the heart.
imported from: doid.owl

diphtheria
type: Class
subclass of: primary bacterial infectious disease
definition: A primary bacterial infectious disease that is characterized by sore throat, low fever, and an adherent membrane (a pseudomembrane) on the tonsils, pharynx, and/or nasal cavity. A milder form of diphtheria can be restricted to the skin. It is caused by Corynebacterium diphtheriae, an aerobic Gram-positive bacterium. Diphtheria toxin spreads through the bloodstream and can lead to potentially life-threatening complications that affect other organs of the body, such as the heart and kidneys.
imported from: doid.owl

Listeria meningitis
type: Class
subclass of: bacterial meningitis
definition: A bacterial meningitis that has_material_basis_in Listeria monocytogenes infection.
imported from: doid.owl

listeriosis
type: Class
subclass of: primary bacterial infectious disease
definition: A primary bacterial infectious disease that results_in infection, has_material_basis_in Listeria monocytogenes, which is transmitted_by ingestion of contaminated food or raw milk or transmitted_by congenital method. Ingestion of Listeria by pregnant women has_symptom nausea, has_symptom vomiting, has_symptom diarrhea, has_symptom fever, has_symptom malaise, has_symptom back pain, and has_symptom headache. Maternal infection with Listeria can result in chorioamnionitis, premature labor, spontaneous abortion, or stillbirth.
imported from: doid.owl

streptococcal meningitis
type: Class
subclass of: bacterial meningitis
definition: A bacterial meningitis that has_material_basis_in streptococcal bacteria.
imported from: doid.owl

Lyme disease
type: Class
subclass of: primary bacterial infectious disease
definition: A primary bacterial infectious disease that results_in infection, has_material_basis_in Borrelia burgdorferi, which is transmitted_by blacklegged tick (Ixodes scapularis) or transmitted_by western blacklegged tick (Ixodes pacificus). The infection has_symptom fever, has_symptom headache, has_symptom fatigue, and has_symptom skin rash called erythema migrans. If left untreated, infection can spread to joints, the heart, and the nervous system.
imported from: doid.owl

Bordetella parapertussis whooping cough
type: Class
subclass of: pertussis
definition: A pertussis that is a milder disease caused by the bacterium Bordetella parapertussis. The disease has_symptom coughing, has_symptom sneezing, or has_symptom runny nose.
imported from: doid.owl

indeterminate leprosy
type: Class
subclass of: leprosy
definition: A leprosy that is an early form of the disease which causes one to a few hypopigmented or erythematous macules.
imported from: doid.owl

esophagitis
type: Class
subclass of: esophageal disease
imported from: doid.owl

botulism
type: Class
subclass of: primary bacterial infectious disease
definition: A primary bacterial infectious disease that involves intoxication caused by botulinum neurotoxins (BoNTA, B, E and F) located in neuromuscular junction resulting in descending muscle paralysis, has_material_basis_in Clostridium botulinum A, has_material_basis_in Clostridium botulinum B, has_material_basis_in Clostridium botulinum E and has_material_basis_in Clostridium botulinum F.
imported from: doid.owl

ulceroglandular tularemia
type: Class
subclass of: tularemia
definition: A tularemia that results_in painful regional lymphadenopathy and an ulcerated skin lesion.
imported from: doid.owl

allergic disease
type: Class
subclass of: immune system disease
definition: An immune system disease that is an exaggerated immune response to allergens, such as insect venom, dust mites, pollen, pet dander, drugs or some foods.
imported from: doid.owl

sodoku disease
type: Class
subclass of: primary bacterial infectious disease
definition: A primary bacterial infectious disease that results_in infection, has_material_basis_in Spirillum minus, which is transmitted_by contact with urine or secretions from the mouth, eye, or nose of an infected animal or transmitted_by bite of an infected animal, especially rat. The infection has_symptom chills, has_symptom relapsing fever, has_symptom rash and has_symptom joint pain.
imported from: doid.owl

vaginal disease
type: Class
subclass of: female reproductive system disease
definition: A female reproductive system disease that is located_in the vagina.
imported from: doid.owl

shigellosis
type: Class
subclass of: primary bacterial infectious disease
subclass of: colonic disease
definition: A primary bacterial infectious disease that results_in infection located_in epithelium of colon, has_material_basis_in Shigella boydii, has_material_basis_in Shigella dysenteriae, has_material_basis_in Shigella flexneri, or has_material_basis_in Shigella sonnei, which produce toxins that can attack the lining of the large intestine, causing swelling, ulcers on the intestinal wall, and bloody diarrhea. The bacteria are transmitted_by ingestion of food and water contaminated with feces.
imported from: doid.owl

blood coagulation disease
type: Class
subclass of: hematopoietic system disease
definition: A hematopoietic system disease that is characterized by abnormal blood clotting or bleeding.
imported from: doid.owl

tuberculous epididymitis
type: Class
subclass of: epididymis disease
subclass of: urogenital tuberculosis
definition: An urogenital tuberculosis that is located_in epididymis, has_symptom pain and has_symptom scrotal swelling.
imported from: doid.owl

hemolytic-uremic syndrome
type: Class
subclass of: kidney disease
definition: A kidney disease that is characterized by hemolytic anemia, thrombocytopenia, and renal failure caused by platelet thrombi in the microcirculation of the kidney and other organs.
imported from: doid.owl

parametritis
type: Class
subclass of: pelvic inflammatory disease
imported from: doid.owl

newborn respiratory distress syndrome
type: Class
subclass of: respiratory failure
definition: A respiratory failure that is characterized by deficiency of the surfactant coating the inner surface of the lungs, by failure of the lungs to expand and contract properly during breathing with resulting collapse, and by the accumulation of a protein-containing film lining the alveoli and their ducts.
imported from: doid.owl

cardiovascular system disease
type: Class
subclass of: disease of anatomical entity
definition: A disease of anatomical entity which occurs in the blood, heart, blood vessels or the lymphatic system that passes nutrients (such as amino acids and electrolytes), gases, hormones, blood cells or lymph to and from cells in the body to help fight diseases and help stabilize body temperature and pH to maintain homeostasis.
imported from: doid.owl

relapsing fever
type: Class
subclass of: primary bacterial infectious disease
definition: A primary bacterial infectious disease that results_in infection, has_material_basis_in Borrelia, which is transmitted_by tick or transmitted_by body louse.
imported from: doid.owl

louse-borne relapsing fever
type: Class
subclass of: relapsing fever
definition: A relapsing fever that is characterized by relapsing or recurring episodes of fever, has_material_basis_in Borrelia recurrentis, which is transmitted_by body louse (Pediculus humanus). The infection has_symptom tachypnea, has_symptom tachycardia, has_symptom hepatosplenomegaly and has_symptom lymphadenopathy.
imported from: doid.owl

tick-borne relapsing fever
type: Class
subclass of: relapsing fever
definition: A relapsing fever that is characterized by relapsing or recurring episodes of fever, has_material_basis_in Borrelia hermsii, has_material_basis_in Borrelia parkeri or has_material_basis_in Borrelia duttoni, which are transmitted_by soft ticks (Ornithodoros parkeri and Ornithodoros hermsii). The infection has_symptom tachypnea, has_symptom tachycardia, has_symptom hepatosplenomegaly and has_symptom lymphadenopathy.
imported from: doid.owl

acute cystitis
type: Class
subclass of: antimicrobial resistance tissue specificity
subclass of: cystitis
definition: A cystitis characterized by a sudden onset or severe symptoms.
imported from: doid.owl

oculoglandular tularemia
type: Class
subclass of: tularemia
definition: A tularemia that results_in inflammation of eye and swelling of lymph glands in front of the ear.
imported from: doid.owl

Haverhill fever
type: Class
subclass of: primary bacterial infectious disease
definition: A primary bacterial infectious disease that results_in infection, has_material_basis_in Streptobacillus moniliformis, which is transmitted_by contact with urine or secretions from the mouth, eye, or nose of an infected animal or transmitted_by bite of an infected animal, especially rat. The infection has_symptom chills, has_symptom fever, has_symptom rash and has_symptom joint pain.
imported from: doid.owl

typhoid fever
type: Class
subclass of: primary bacterial infectious disease
definition: A primary bacterial infectious disease that is a communicable systemic illness, has_material_basis_in Salmonella enterica subsp enterica serovar Typhi, which is transmitted_by ingestion of food or water contaminated with the feces of an infected person. The infection has_symptom fever, has_symptom diarrhea, has_symptom prostration, has_symptom headache, has_symptom splenomegaly, has_symptom liver enlargement, has_symptom eruption of rose-colored spots, and has_symptom leukopenia.
imported from: doid.owl

Klebsiella pneumonia
type: Class
subclass of: bacterial pneumonia
definition: A bacterial pneumonia involving Klebsiella pneumoniae infection. Patients with Klebsiella pneumonia tend to cough up a characteristic sputum that is said to resemble red-currant jelly. Klebsiella pneumonia tends to affect people with underlying diseases, such as alcoholism, diabetes and chronic lung disease. The symptoms include high fever, rigors and pleuritic pain, and hemoptysis.
imported from: doid.owl

Mycoplasma pneumoniae pneumonia
type: Class
subclass of: bacterial pneumonia
definition: A bacterial pneumonia that is caused by the bacterial species Mycoplasma pneumoniae. The symptoms include chest pain, chills, dry cough which is not bloody, excessive sweating, fever, headache and sore throat.
imported from: doid.owl

intestinal tuberculosis
type: Class
subclass of: gastrointestinal tuberculosis
subclass of: intestinal disease
definition: A gastrointestinal tuberculosis that involves diffuse mucosal fold thickening, formation of ulcers and fistulae located_in intestine. The infection has_symptom abdominal pain, has_symptom gastrointestinal bleeding, has_symptom nausea and has_symptom vomiting.
imported from: doid.owl

scrub typhus
type: Class
subclass of: typhus
definition: A typhus that has_material_basis_in Orientia tsutsugamushi, which is transmitted by trombiculid mites (Leptotrombidium deliense). The infection has symptom fever, has symptom headache, has symptom muscle pain, has symptom cough, has symptom maculopapular rash, has symptom eschar, has symptom splenomegaly and has symptom lymphadenopathy.
imported from: doid.owl

gastrointestinal anthrax
type: Class
subclass of: anthrax disease
subclass of: gastrointestinal system disease
definition: An anthrax disease that results in infection located in mucosa of gastrointestinal tract, has_material_basis_in Bacillus anthracis, which is transmitted by ingestion of anthrax-infected meat. The infection has symptom lesions, has symptom vomiting of blood, has symptom severe diarrhea, has symptom loss of appetite.
imported from: doid.owl

bejel
type: Class
subclass of: primary bacterial infectious disease
definition: A primary bacterial infectious disease that results in infection located in mucosa of mouth, located in skin or located in bone, has_material_basis_in Treponema pallidum subsp endemicum, which is transmitted by contact or transmitted by sharing of domestic utensils. The infection has symptom moist patches in the mouth, has symptom lumps in long bones, tissues around the mouth, nose, and roof of the mouth. These lumps destroy tissue, causing bones to be deformed and disfiguring the face.
imported from: doid.owl

glanders
type: Class
subclass of: primary bacterial infectious disease
definition: A primary bacterial infectious disease that results in septicemic infection, has_material_basis_in Burkholderia mallei, which is transmitted by contact with tissues or body fluids of infected animals, or through mucosal surfaces such as the eyes and nose. The infection has symptom fever, has symptom chills, has symptom sweating, has symptom muscle aches, has symptom chest pain, has symptom muscle tightness, has symptom headache, has symptom mucopurulent nasal discharge, and has symptom nodular lesions in the lungs.
imported from: doid.owl

tetanus neonatorum
type: Class
subclass of: tetanus
definition: A tetanus that occurs in newborn babies when the birth cord stump gets dirty through cutting it with an unclean blade or applying substances containing bacteria to it. The infection has symptom stiff body, has symptom muscle spasms, has symptom difficulty in breathing, and has symptom exhaustion.
imported from: doid.owl

campylobacteriosis
type: Class
subclass of: bacterial infectious disease
subclass of: gastroenteritis
definition: A primary bacterial infectious disease that results_in infection located_in intestine, has_material_basis_in Campylobacter jejuni, which is transmitted_by ingestion of contaminated food or water or transmitted_by contact with infected people or animals. The infection has_symptom diarrhea or has_symptom dysentery, has_symptom abdominal cramps and pain, and has_symptom fever.
imported from: doid.owl

chancroid
type: Class
subclass of: primary bacterial infectious disease
subclass of: skin disease
definition: A primary bacterial infectious disease that is a sexually transmitted infection located in skin of the genitals, has_material_basis_in Haemophilus ducreyi, which is transmitted by sexual contact. The infection has symptom painful and soft ulcers.
imported from: doid.owl

inclusion conjunctivitis
type: Class
subclass of: commensal bacterial infectious disease
subclass of: conjunctival disease
definition: A commensal bacterial infectious disease that results_in inflammation, located_in conjunctiva of the eye, has_material_basis_in Chlamydia trachomatis, which is transmitted_by sexual contact. The infection has_symptom swollen conjunctiva and eyelids and has_symptom discharge of pus and mucus.
imported from: doid.owl

lymphogranuloma venereum
type: Class
subclass of: Ritter's disease
subclass of: granuloma inguinale
definition: A commensal bacterial infectious disease that results_in infection located_in lymph nodes, has_material_basis_in Chlamydia trachomatis, which is transmitted_by sexual contact, and transmitted_by fomites. The infection has_symptom inguinal lymphadenitis, has_symptom abscesses in the groin area, and has_symptom lymphangitis.
imported from: doid.owl

bacterial esophagitis
type: Class
subclass of: bacterial infectious disease
subclass of: esophagitis
imported from: doid.owl

Brucella canis brucellosis
type: Class
subclass of: brucellosis
definition: A brucellosis involving an infection caused by Brucella canis [NCBITaxon:36855] in dogs and humans. The disease has_symptom fever, has_symptom sweats, has_symptom weakness, has_symptom weight loss, has_symptom headache, has_symptom lymphadenopathy and has_symptom splenomegaly.
imported from: doid.owl

boutonneuse fever
type: Class
subclass of: spotted fever
definition: A spotted fever that has_material_basis_in Rickettsia conorii subsp conorii, which is transmitted_by dog tick (Rhipicephalus sanguineus). The infection has_symptom fever, has_symptom eschar (usually single), has_symptom regional adenopathy, has_symptom maculopapular rash on extremities.
imported from: doid.owl

toxic shock syndrome
type: Class
subclass of: commensal bacterial infectious disease
definition: A commensal bacterial infectious disease that results_in infection, has_material_basis_in Streptococcus pyogenes or has_material_basis_in Staphylococcus aureus, which produce toxins that are absorbed systemically and produce the systemic manifestations. The infection has_symptom fever, has_symptom rash, has_symptom hypotension, has_symptom multiorgan failure, has_symptom desquamation, has_symptom vomiting, has_symptom diarrhea, has_symptom headache, and has_symptom nonfocal neurologic abnormalities.
imported from: doid.owl

gastrointestinal tularemia
type: Class
subclass of: tularemia
subclass of: gastrointestinal system disease
definition: A tularemia that results in formation of ulcerative lesions located in gastrointestinal tract. The infection has symptom fever, has symptom chills, has symptom malaise, has symptom muscle aches, and has symptom vomiting.
imported from: doid.owl

ureteral disease
type: Class
subclass of: urinary system disease
definition: A urinary system disease that is located_in the ureter.
imported from: doid.owl

Brucella melitensis brucellosis
type: Class
subclass of: brucellosis
definition: A brucellosis that involves an infection caused by Brucella melitensis [NCBITaxon:29459] in cattle, goats, sheep and humans. The disease has_symptom fever, has_symptom malaise, has_symptom anorexia, has_symptom limb pain and has_symptom back pain.
imported from: doid.owl

Brucella abortus brucellosis
type: Class
subclass of: brucellosis
definition: A brucellosis that involves an infection caused by Brucella abortus [NCBITaxon:235] in cattle and humans. The disease has_symptom fever, has_symptom chills, has_symptom sweats, has_symptom weight loss, has_symptom malaise, has_symptom headaches, has_symptom myalgia, and has_symptom arthralgia.
imported from: doid.owl

anaerobic meningitis
type: Class
subclass of: bacterial meningitis
imported from: doid.owl

disease of cellular proliferation
type: Class
subclass of: disease
definition: A disease that is characterized by abnormally rapid cell division.
imported from: doid.owl

cholera
type: Class
subclass of: primary bacterial infectious disease
definition: A primary bacterial infectious disease that is described as an acute, diarrheal illness caused by infection of the intestine with the bacterium Vibrio cholerae, which is characterized by profuse watery diarrhea, vomiting, leg cramps, circulatory collapse and shock.
imported from: doid.owl

reproductive system disease
type: Class
subclass of: disease of anatomical entity
definition: A disease of anatomical entity that is located_in reproductive system organs.
imported from: doid.owl

pleural disease
type: Class
subclass of: lower respiratory tract disease
definition: A thoracic disease which may involve inflammation of pleura, collection of air within the pleural cavity, abnormal collection of pleural fluid, abnormal growths on the pleura (pleural tumor) and pleural plaques. The main causes of pleural diseases including pleural effusions are congestive heart failure, malignancy, parapneumonic infections and pulmonary embolism.
imported from: doid.owl

fungal infectious disease
type: Class
subclass of: disease by infectious agent
definition: A disease by infectious agent that results_in infection, has_material_basis_in Fungi, which pass the resistance barriers of the human or animal body.
imported from: doid.owl

respiratory system disease
type: Class
subclass of: antimicrobial resistance tissue specificity
subclass of: disease of anatomical entity
definition: A disease of anatomical entity that located_in the respiratory system which extends from the nasal sinuses to the diaphragm.
imported from: doid.owl

rheumatic fever
type: Class
subclass of: bacterial infectious disease
definition: A connective tissue disease that develops from an antecedent Group A Streptococcal pharyngeal infection and has_symptom carditis, has_symptom polyarthritis, has_symptom chorea, has_symptom erythema marginatum, has_symptom subcutaneous nodules, has_symptom arthralgia, has_symptom prolonged PR interval, and/or has_symptom fever.
imported from: doid.owl

integumentary system disease
type: Class
subclass of: disease of anatomical entity
definition: A disease of anatomical entity that is located_in the integumentary system comprising the skin and its appendages.
imported from: doid.owl

cancer
type: Class
subclass of: disease of cellular proliferation
definition: A disease of cellular proliferation that is malignant and primary, characterized by uncontrolled cellular proliferation, local cell invasion and metastasis.
imported from: doid.owl

central nervous system tuberculosis
type: Class
subclass of: extrapulmonary tuberculosis
subclass of: central nervous system disease
definition: An extrapulmonary tuberculosis that results in formation of tuberculomas located_in brain or located_in spinal cord.
imported from: doid.owl

skeletal tuberculosis
type: Class
subclass of: extrapulmonary tuberculosis
subclass of: bone disease
definition: An extrapulmonary tuberculosis that results in formation of lesions located in bone.
imported from: doid.owl

cystitis
type: Class
subclass of: bladder disease
definition: A bladder disease that is characterized by inflammation of the bladder.
imported from: doid.owl

musculoskeletal system disease
type: Class
subclass of: disease of anatomical entity
definition: A disease of anatomical entity that occurs in the muscular and/or skeletal system.
imported from: doid.owl

urinary system disease
type: Class
subclass of: disease of anatomical entity
definition: A disease of anatomical entity that is located_in kidney, ureter, bladder and urethra.
imported from: doid.owl

fallopian tube disease
type: Class
subclass of: female reproductive system disease
definition: A female reproductive system disease that is located_in the fallopian tube.
imported from: doid.owl

pneumonic tularemia
type: Class
subclass of: tularemia
subclass of: lung disease
definition: A tularemia that is located_in lungs. The bacteria are transmitted_by breathing dusts or aerosols containing the organisms. The infection has_symptom cough, has_symptom chest has_symptom pain, and has_symptom difficulty breathing.
imported from: doid.owl

tularemia
type: Class
subclass of: primary bacterial infectious disease
definition: A primary bacterial infectious disease that has_material_basis_in Francisella tularensis, which is transmitted by dog tick bite (Dermacentor variabilis), transmitted by deer flies (Chrysops sp) or transmitted by contact with infected animal tissues.
imported from: doid.owl

tuberculous oophoritis
type: Class
subclass of: ovarian disease
subclass of: urogenital tuberculosis
definition: An urogenital tuberculosis that results_in inflammtion located_in ovary.
imported from: doid.owl

urogenital tuberculosis
type: Class
subclass of: extrapulmonary tuberculosis
definition: An extrapulmonary tuberculosis that is located_in urogenital system.
imported from: doid.owl

vaginitis
type: Class
subclass of: vaginal disease
definition: A vaginal disease that is characterized by inflammation of the vagina.
imported from: doid.owl

gonadal disease
type: Class
subclass of: endocrine system disease
definition: An endocrine system disease that is located_in the gonads.
imported from: doid.owl

female reproductive system disease
type: Class
subclass of: reproductive system disease
definition: A reproductive system disease that impairs the ability to reproduce and is located in the uterus, vagina, cervix, ovaries or fallopian tubes.
imported from: doid.owl

leptospirosis
type: Class
subclass of: primary bacterial infectious disease
definition: A primary bacterial infectious disease that involves systemic infection, has_material_basis_in Leptospira, which is transmitted by contact with water, food, or soil containing urine from the infected animals. The infection has symptom jaundice, has symptom chills, has symptom fever, has symptom muscle pain, and has symptom hepatomegaly.
imported from: doid.owl

nocardiosis
type: Class
subclass of: opportunistic bacterial infectious disease
definition: An opportunistic bacterial infectious disease that results_in disseminated infection in immunocompromised hosts, has_material_basis_in Nocardia asteroides. The infection has_symptom pneumonia, has_symptom cellulitis, has_symptom lesions in the brain or meninges, and has_symptom ascending regional lymphadenopathy.
imported from: doid.owl

gastroenteritis
type: Class
subclass of: gastrointestinal system disease
definition: A gastrointestinal system infectious disease that involves inflammation of the lining of the stomach and small and large intestines, which is caused by viruses, bacteria, or parasites. Chemicals and drugs also cause gastroenteritis. The symptoms include diarrhea, loss of appetite, nausea, vomiting, cramps, and discomfort in the abdomen.
imported from: doid.owl

thrombophilia
type: Class
subclass of: blood coagulation disease
definition: A blood coagulation disease that is characterized by an increased tendency to form clots.
imported from: doid.owl

splenic disease
type: Class
subclass of: lymphatic system disease
imported from: doid.owl

hematologic cancer
type: Class
subclass of: organ system cancer
subclass of: hematopoietic system disease
definition: An organ system cancer located in the hematological system that is characterized by uncontrolled cellular proliferation in blood, bone marrow and lymph nodes.
imported from: doid.owl

Mycobacterium avium complex disease
type: Class
subclass of: primary bacterial infectious disease
definition: A primary bacterial infectious disease that results_in infection, has_material_basis_in Mycobacterium avium complex (MAC), which is transmitted_by inhalation or transmitted_by ingestion of via the respiratory or gastrointestinal tract respectively. The bacteria cause disseminated infection in HIV infected people, while pulmonary disease in immunocompetent persons.
imported from: doid.owl

endocrine system disease
type: Class
subclass of: disease of anatomical entity
definition: A disease of anatomical entity that is located_in endocrine glands which secretes a type of hormone directly into the bloodstream to regulate the body.
imported from: doid.owl

immune system disease
type: Class
subclass of: disease of anatomical entity
definition: A disease of anatomical entity that is located_in the immune system.
imported from: doid.owl

severe acute respiratory syndrome
type: Class
subclass of: Coronavirus infectious disease
definition: A Coronavirus infectious disease that results_in infection located_in respiratory tract, has_material_basis_in SARS coronavirus (SARS-CoV), which is transmitted_by droplet spread of respiratory secretions, transmitted_by ingestion of contaminated food, or transmitted_by fomites. The infection has_symptom fever, has_symptom headache, has_symptom body aches, has_symptom dry cough, and has_symptom hypoxia.
imported from: doid.owl

pulmonary tuberculosis
type: Class
subclass of: tuberculosis
subclass of: lung disease
definition: A tuberculosis that is a contagious disease located_in lungs. The infection has_symptom fever, has_symptom cough, has_symptom difficulty in breathing, has_symptom inflammatory infiltrations, has_symptom formation of tubercles, has_symptom caseation, has_symptom pleural effusion, and has_symptom fibrosis.
imported from: doid.owl

food allergy
type: Class
subclass of: gastrointestinal allergy
subclass of: dietary restriction
subclass of: OBI_1110049
definition: A hypersensitivity reaction type I disease that is an abnormal response to a food, triggered by the body's immune system.
imported from: doid.owl

paratyphoid fever
type: Class
subclass of: primary bacterial infectious disease
definition: A primary bacterial infectious disease that results_in infection located_in intestine, has_material_basis_in Salmonella enterica subsp enterica serovar Paratyphi A, B or C, which are transmitted_by ingestion of contaminated food. The infection has_symptom fever, has_symptom headache, has_symptom abdominal pain, has_symptom malaise, has_symptom anorexia, has_symptom constipation, has_symptom rosy spots on the central body, has_symptom non productive cough (in early stage of illness), has_symptom bradycardia, and has_symptom hepatosplenomegaly.
imported from: doid.owl

Acinetobacter infectious disease
type: Class
subclass of: opportunistic bacterial infectious disease
definition: An opportunistic bacterial infectious disease that has_material_basis_in Acinetobacter.
imported from: doid.owl

hepatobiliary disease
type: Class
subclass of: gastrointestinal system disease
definition: A gastrointestinal system disease that is located_in the liver and/or biliary tract.
imported from: doid.owl

spinal cord disease
type: Class
subclass of: central nervous system disease
imported from: doid.owl

central nervous system disease
type: Class
subclass of: nervous system disease
definition: A nervous system disease that affects either the spinal cord (myelopathy) or brain (encephalopathy) of the central nervous system.
imported from: doid.owl

bone inflammation disease
type: Class
subclass of: bone disease
definition: A bone disease that results_in inflammation of the located_in bone.
imported from: doid.owl

bacterial vaginosis
type: Class
subclass of: bacterial infectious disease
subclass of: vaginitis
definition: A vaginitis that is characterized by a grayish vaginal discharge usually of foul odor and the presence of Gardnerella vaginalis.
imported from: doid.owl

breast disease
type: Class
subclass of: disease of anatomical entity
definition: A disease of anatomical entity that is located_in the breast.
imported from: doid.owl

septicemic plague
type: Class
subclass of: cardiovascular system disease
subclass of: plague
definition: A plague that results_in infection located_in vasculature where bacterial endotoxins cause coagulation, which leads to formation of tiny clots throughout the body. The infection has_symptom fever, has_symptom chills, has_symptom prostration, has_symptom abdominal pain, has_symptom shock and has_symptom bleeding into skin and other organs.
imported from: doid.owl

plague
type: Class
subclass of: primary bacterial infectious disease
definition: A primary bacterial infectious disease that results_in infection, located_in lymph node, located_in vasculature or located_in lungs, has_material_basis_in Yersinia pestis, which is transmitted_by oriental rat flea (Xenopsylla cheopis) infected by feeding on rodents and other mammals, transmitted_by air, transmitted_by direct contact or transmitted_by ingestion of contaminated undercooked food.
imported from: doid.owl

bladder disease
type: Class
subclass of: urinary system disease
definition: A urinary system disease that is located_in the bladder.
imported from: doid.owl

wheat allergy
type: Class
subclass of: food allergy
definition: A food allergy that develops_from exposure to and particularly consumption of wheat, and has_symptom that are both gastrointestinal and nongastrointestinal in nature, such as diarrhea, mouth and throat irritation, headache, hives, skin rashes, and anaphylaxis.
imported from: doid.owl

skin disease
type: Class
subclass of: antimicrobial resistance tissue specificity
subclass of: integumentary system disease
definition: An integumentary system disease that is located_in skin.
imported from: doid.owl

extrinsic cardiomyopathy
type: Class
subclass of: cardiomyopathy
definition: A cardiomyopathy that is characterized by the pathology occurring outside of the myocardium.
imported from: doid.owl

tuberculosis
type: Class
subclass of: primary bacterial infectious disease
definition: A primary bacterial infectious disease that is located_in lungs, located_in lymph nodes, located_in pericardium, located_in brain, located_in pleura or located_in gastrointestinal tract, has_material_basis_in Mycobacterium tuberculosis, which is transmitted_by droplets released into the air when an infected person coughs or sneezes.
imported from: doid.owl

disease
type: Class
subclass of: disposition
definition: A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.
imported from: doid.owl
database_cross_reference: http://purl.obolibrary.org/obo/OGMS_0000031

multidrug-resistant tuberculosis
type: Class
subclass of: tuberculosis
definition: A tuberculosis that is resistant to isoniazid and rifampicin, the two most powerful first-line anti-TB drugs.
imported from: doid.owl

oral tuberculosis
type: Class
subclass of: mouth disease
subclass of: gastrointestinal tuberculosis
definition: A gastrointestinal tuberculosis that involves formation of painful ulcerative mucosal lesions located in tongue, located in palate, located in maxilla or located in mandible.
imported from: doid.owl

gastritis
type: Class
subclass of: stomach disease
definition: A stomach disease that is an inflammation of the lining of the stomach.
imported from: doid.owl

mouth disease
type: Class
subclass of: gastrointestinal system disease
definition: A gastrointestinal system disease that is located_in the mouth.
imported from: doid.owl

bacterial gastritis
type: Class
subclass of: bacterial infectious disease
subclass of: gastritis
definition: A gastritis that involves inflammation of the stomach lining caused by bacteria. The disease has_symptom abdominal pain, has_symptom indigestion, has_symptom ulcer formation, has_symptom abdominal bloating, has_symptom nausea and has_symptom vomiting.
imported from: doid.owl

gastrointestinal tuberculosis
type: Class
subclass of: abdominal tuberculosis
definition: An abdominal tuberculosis that results_in infection located_in gastrointestinal tract. The infection has_symptom abdominal pain, has_symptom weight loss, has_symptom fever, has_symptom anorexia, has_symptom constipation, has_symptom nausea, and has_symptom vomiting.
imported from: doid.owl

hepatic tuberculosis
type: Class
subclass of: gastrointestinal tuberculosis
subclass of: liver disease
definition: A gastrointestinal tuberculosis that involves infection located_in liver, which results in the formation of tuberculous granulomas. The infection has_symptom fever, has_symptom anorexia, has_symptom weight loss, has_symptom abdominal pain and has_symptom jaundice.
imported from: doid.owl

liver disease
type: Class
subclass of: hepatobiliary disease
imported from: doid.owl

primary syphilis
type: Class
subclass of: syphilis
definition: A syphilis that is the first stage of syphilis, marked by the development of a chancre, which is characterized by mononuclear leukocytic infiltration, macrophages, and lymphocytes.
imported from: doid.owl

secondary syphilis
type: Class
subclass of: syphilis
definition: A syphilis that is characterized as the second stage of syphilis which appears from 2 to 6 months after primary infection, and is marked by lesions especially in the skin but also in organs and tissues, and that lasts from 3 to 12 weeks.
imported from: doid.owl

syphilis
type: Class
subclass of: primary bacterial infectious disease
definition: A primary bacterial infectious disease that is a sexually transmitted systemic disease, has_material_basis_in Treponema pallidum subsp pallidum, which is transmitted_by sexual contact, transmitted_by blood product transfusion, transmitted_by congenital method from mother to fetus or transmitted_by contact with infectious lesions. If left untreated, produces chancres, rashes, and systemic lesions in a clinical course with three stages continued over many years.
imported from: doid.owl

autoimmune disease
type: Class
subclass of: primary immunodeficiency disease
definition: An immune system disease that is an overactive immune response of the body against substances and tissues normally present in the body resulting from an abnormal functioning of the immune system that results in the production of antibodies or T cell directed against the host tissues.
imported from: doid.owl

conjunctival disease
type: Class
subclass of: eye disease
definition: An eye disease affecting the conjunctiva, which is the mucous membrane surrounding the eye and interior of the eyelids.
imported from: doid.owl

milk allergy
type: Class
subclass of: food allergy
definition: A food allergy that results in adverse immune reaction to one or more of the proteins in cow's milk and/or the milk of other animals, which are normally harmless to the non-allergic individual.
imported from: doid.owl

egg allergy
type: Class
subclass of: food allergy
definition: A food allergy that is an allergy or hypersensitivity to dietary substances from the yolk or whites of eggs, causing an overreaction of the immune system which may lead to severe physical symptoms.
imported from: doid.owl

peanut allergy
type: Class
subclass of: legume allergy
definition: A legume allergy that is an allergy or hypersensitivity to dietary substances from peanuts causing an overreaction of the immune system which in a small percentage of people may lead to severe physical symptoms.
imported from: doid.owl

nut allergy
type: Class
subclass of: food allergy
definition: A food allergy that develops_from exposure to and particularly consumption of nuts, and has_symptom asthma, skin rashes, throat and eye irritation, and anaphylaxis.
imported from: doid.owl

subacute bacterial endocarditis
type: Class
subclass of: infective endocarditis
imported from: doid.owl

male reproductive system disease
type: Class
subclass of: reproductive system disease
definition: A reproductive system disease that affects male reproductive organs.
imported from: doid.owl

lymph node tuberculosis
type: Class
subclass of: extrapulmonary tuberculosis
subclass of: lymph node disease
definition: An extrapulmonary tuberculosis that is located_in lymph node, and has_symptom lymphadenopathy, has_symptom fever, has_symptom weight loss, has_symptom fatigue, has_symptom night sweats and has_symptom cough.
imported from: doid.owl

pericardial tuberculosis
type: Class
subclass of: extrapulmonary tuberculosis
subclass of: pericardium disease
definition: An extrapulmonary tuberculosis that is located_in pericardium resulting in acute pericarditis, chronic pericardial effusion, cardiac tamponade or pericardial constriction.
imported from: doid.owl

actinobacillosis
type: Class
subclass of: commensal bacterial infectious disease
subclass of: respiratory system disease
definition: A commensal bacterial infectious disease that results_in infection, has_material_basis_in Actinobacillus ureae, which is a commensal of the human respiratory tract. The pathogen causes meningitis, endocarditis, bacteremia, atrophic rhinitis, bronchitis, pneumonia, conjunctivitis, peritonitis, and otitis media.
imported from: doid.owl

melioidosis
type: Class
subclass of: primary bacterial infectious disease
definition: A primary bacterial infectious disease that results_in infection, has_material_basis_in Burkholderia pseudomallei, which is transmitted_by contact with the contaminated water or soil. The infection has_symptom fever, has_symptom respiratory distress, has_symptom chest pain, and has_symptom stomach pain.
imported from: doid.owl

intestinal disease
type: Class
subclass of: gastrointestinal system disease
definition: A gastrointestinal system disease that is located_in the intestine.
imported from: doid.owl

eyelid disease
type: Class
subclass of: skin disease
definition: An adnexa disease that is located_in the eyelid.
imported from: doid.owl

colonic disease
type: Class
subclass of: intestinal disease
definition: A intestinal disease located in the colon.
imported from: doid.owl

pneumonia
type: Class
subclass of: lung disease
definition: A lung disease that involves lung parenchyma or alveolar inflammation and abnormal alveolar filling with fluid (consolidation and exudation). It results from a variety of causes including infection with bacteria, viruses, fungi or parasites, and chemical or physical injury to the lungs. It is accompanied by fever, chills, cough, and difficulty in breathing.
imported from: doid.owl

kidney disease
type: Class
subclass of: urinary system disease
definition: A urinary system disease that is located_in the kidney.
imported from: doid.owl

eye disease
type: Class
subclass of: sensory system disease
definition: An eye and adnexa disease that is located_in the eye.
imported from: doid.owl

esophageal disease
type: Class
subclass of: gastrointestinal system disease
definition: A gastrointestinal system disease that is located_in the esophagus.
imported from: doid.owl

primary immunodeficiency disease
type: Class
subclass of: immune system disease
definition: An immune system disease that results when one or more essential parts of the immune system is missing or not working properly at birth due to a genetic mutation.
imported from: doid.owl

conjunctivitis
type: Class
subclass of: conjunctival disease
definition: A conjunctival disease characterized by an inflammation of the conjunctiva, the outermost layer of the eye and the inner surface of the eyelids.
imported from: doid.owl

connective tissue disease
type: Class
subclass of: musculoskeletal system disease
definition: A musculoskeletal system disease that affects tissues such as skin, tendons, and cartilage.
imported from: doid.owl

disease of anatomical entity
type: Class
subclass of: disease
definition: A disease that manifests in a defined anatomical structure.
imported from: doid.owl

esophageal tuberculosis
type: Class
subclass of: gastrointestinal tuberculosis
subclass of: esophageal disease
definition: A gastrointestinal tuberculosis that involves formation of tuberculous ulcers located_in esophagus. The infection has_symptom dysphagia, has_symptom cough, has_symptom chest pain, has_symptom fever and has_symptom weight loss.
imported from: doid.owl

hematopoietic system disease
type: Class
subclass of: disease of anatomical entity
definition: A disease of anatomical entity that has_material_basis_in hematopoietic cells.
imported from: doid.owl

cutaneous anthrax
type: Class
subclass of: skin disease
subclass of: anthrax disease
definition: An anthrax disease that results_in infection located_in skin, has_material_basis_in Bacillus anthracis, which is transmitted_by contact with infected animals or animal products. The infection has_symptom skin lesion that eventually forms an ulcer with a black center.
imported from: doid.owl

anthrax disease
type: Class
subclass of: primary bacterial infectious disease
definition: A primary bacterial infectious disease that results_in infection located_in skin, located_in lung lymph nodes or located_in gastrointestinal tract, has_material_basis_in Bacillus anthracis, transmitted_by contact with infected animals or animal products, transmitted_by airborne spores or transmitted_by ingestion of undercooked meat from infected animals and has_symptom skin ulcer, has_symptom nausea, has_symptom poor appetite, has_symptom bloody diarrhea, has_symptom fever or has_symptom shortness of breath.
imported from: doid.owl

lymphatic system disease
type: Class
subclass of: immune system disease
definition: An immune system disease that is located_in the lymphatic system.
imported from: doid.owl

bladder tuberculosis
type: Class
subclass of: urogenital tuberculosis
subclass of: bladder disease
definition: An urogenital tuberculosis that is located_in urinary bladder, which results in fibrosis of bladder wall muscles.
imported from: doid.owl

gonorrhea
type: Class
subclass of: primary bacterial infectious disease
subclass of: fallopian tube disease
definition: A primary bacterial infectious disease that is a sexually transmitted infection, located_in uterus, located_in fallopian tube, located_in urethra, located_in mouth, located_in throat, located_in eye or located_in anus, has_material_basis_in Neisseria gonorrhoeae, which is transmitted_by contact with the penis, vagina, mouth, or anus or transmitted_by congenitally from mother to baby during delivery. The infection has_symptom burning sensation during urination, has_symptom discharge from the penis, has_symptom increased vaginal discharge, or has_symptom vaginal bleeding between periods.
imported from: doid.owl

stomach disease
type: Class
subclass of: gastrointestinal system disease
definition: A gastrointestinal system disease that is located_in the stomach.
imported from: doid.owl

gastrointestinal system disease
type: Class
subclass of: disease of anatomical entity
definition: A disease of anatomical entity that is located_in the gastrointestinal tract.
imported from: doid.owl

myocarditis
type: Class
subclass of: extrinsic cardiomyopathy
definition: An extrinsic cardiomyopathy that is characterized as an inflammation of the heart muscle.
imported from: doid.owl

tertiary syphilis
type: Class
subclass of: syphilis
definition: A syphilis that is characterized as the third stage of syphilis that develops after the disappearance of the secondary symptoms and is marked by ulcers and gummas under the skin and commonly by involvement of the skeletal, cardiovascular, and nervous systems.
imported from: doid.owl

ureter tuberculosis
type: Class
subclass of: ureteral disease
subclass of: urogenital tuberculosis
definition: An urogenital tuberculosis that is located_in ureter resulting in ureteral strictures.
imported from: doid.owl

peritonitis
type: Class
subclass of: gastrointestinal system disease
definition: A gastrointestinal system disease that involves inflammation of the peritoneum resulting from perforation of the gastrointestinal tract, which produces immediate chemical inflammation followed shortly by infection from intestinal organisms. Peritonitis can also result from appendicitis, diverticulitis, strangulating intestinal obstruction, pancreatitis, pelvic inflammatory disease, mesenteric ischemia, intraperitoneal blood, barium, or peritoneo-systemic shunts, drains, and dialysis catheters in the peritoneal cavity. The symptoms include abdominal pain and tenderness, fever, fluid in the abdomen, nausea, vomiting and low urine output.
imported from: doid.owl

actinomycosis
type: Class
subclass of: commensal bacterial infectious disease
subclass of: respiratory system disease
definition: A commensal bacterial infectious disease that results in infection, which is characterized by contiguous spread, suppurative and granulomatous inflammation, and formation of multiple abscesses and sinus tracts that may discharge sulfur granules, has_material_basis_in Actinomyces israelii, has_material_basis_in Actinomyces gerencseriae, has_material_basis_in Actinomyces naeslundii, has_material_basis_in Actinomyces odontolyticus, has_material_basis_in Actinomyces viscosus, has_material_basis_in Actinomyces meyeri, has_material_basis_in Propionibacterium propionicum, which require a break in the integrity of the mucous membranes and the presence of devitalized tissue to invade deeper body structures.
imported from: doid.owl

rheumatic myocarditis
type: Class
subclass of: bacterial infectious disease
subclass of: myocarditis
imported from: doid.owl

lung disease
type: Class
subclass of: lower respiratory tract disease
definition: A lower respiratory tract disease in which the function of the lungs is adversely affected by narrowing or blockage of the airways resulting in poor air flow, a loss of elasticity in the lungs that produces a decrease in the total volume of air that the lungs are able to hold, and clotting, scarring, or inflammation of the blood vessels that affect the ability of the lungs to take up oxygen and to release carbon dioxide.
imported from: doid.owl

ulcerative colitis
type: Class
subclass of: autoimmune disease of gastrointestinal tract
subclass of: colitis
definition: A colitis that is predominantly confined to the mucosa located_in colon and includes characteristic ulcers, or open sores.
imported from: doid.owl

scarlet fever
type: Class
subclass of: bacterial infectious disease
subclass of: upper respiratory tract disease
definition: An upper respiratory tract disease described as an acute contagious disease caused by Group A bacteria of the genus Streptococcus (especially various strains of S. pyogenes) and characterized by inflammation of the nose, throat, and mouth, generalized toxemia, and a red rash.
imported from: doid.owl

nervous system disease
type: Class
subclass of: disease of anatomical entity
definition: A disease of anatomical entity that is located_in the central nervous system or located_in the peripheral nervous system.
imported from: doid.owl

anaerobic pneumonia
type: Class
subclass of: aspiration pneumonia
definition: An aspiration pneumonia caused by anaerobic bacteria like Bacteroides fragilis, Peptostreptococcus, anaerobic streptococci, Fusobacterium species (Fusobacterium nucleatum and Fusobacterium necrophoram). Lung abscess and empyema are diagnosed in this disease.
imported from: doid.owl

bacterial pneumonia
type: Class
subclass of: bacterial infectious disease
subclass of: pneumonia
definition: A pneumonia involving inflammation of the lungs caused by bacteria.
imported from: doid.owl

Ritter's disease
type: Class
subclass of: commensal bacterial infectious disease
subclass of: skin disease
definition: A commensal bacterial infectious disease that is characterized by widespread erythema, peeling, and necrosis of the skin, that is caused by a toxin produced by a bacterium of the genus Staphylococcus (S. aureus). The infection has_symptom redness of skin, has_symptom fluid-filled blister formation, has_symptom fever and has_symptom irritability.
imported from: doid.owl

granuloma inguinale
type: Class
subclass of: primary bacterial infectious disease
definition: A primary bacterial infectious disease that results_in infection located_in skin or located_in mucosa of genital tract, has_material_basis_in Klebsiella granulomatis, transmitted by sexual contact or transmitted_by contact with the open sores. The infection has_symptom painless genital ulcers.
imported from: doid.owl

gas gangrene
type: Class
subclass of: commensal bacterial infectious disease
subclass of: muscular disease
definition: A commensal bacterial infectious disease that results in infection, located in muscle tissue, has_material_basis_in Clostridium perfringens, which produce gas that becomes trapped in the infected tissue. Gas gangrene usually develops after injuries or surgery. The infection has symptom large blisters, has symptom pain in the infected area, has symptom myonecrosis, has symptom gas production, and has symptom sepsis.
imported from: doid.owl

splenic tuberculosis
type: Class
subclass of: abdominal tuberculosis
subclass of: splenic disease
definition: An abdominal tuberculosis that results_in formation of granulomas or abscesses located_in spleen.
imported from: doid.owl

viral infectious disease
type: Class
subclass of: disease by infectious agent
definition: A disease by infectious agent that results in infection, has_material_basis_in Viruses.
imported from: doid.owl

brain disease
type: Class
subclass of: central nervous system disease
definition: A central nervous system disease that is located_in the brain.
imported from: doid.owl

vesiculitis
type: Class
subclass of: male reproductive system disease
imported from: doid.owl

bacterial meningitis
type: Class
subclass of: bacterial infectious disease
subclass of: meningitis
definition: A meningitis that has_material_basis_in a bacterial infection.
imported from: doid.owl

meningitis
type: Class
subclass of: central nervous system disease
subclass of: host illness associated with
definition: A central nervous system disease that is characterized by an inflammation of the pia-arachnoid meninges. It can be caused by growth of bacteria, fungi, or parasites within the subarachnoid space or by the growth of bacteria or viruses within the meningeal or ependymal cells.
imported from: doid.owl
database_cross_reference: IAO_0000120

latent syphilis
type: Class
subclass of: syphilis
definition: A syphilis that is characterized as having serologic proof of infection without signs or symptoms of disease.
imported from: doid.owl

encephalitis
type: Class
subclass of: brain disease
definition: A brain disease that is characterized as an acute inflammation of the brain with flu-like symptoms.
imported from: doid.owl

staphyloenterotoxemia
type: Class
subclass of: primary bacterial infectious disease
definition: A primary bacterial infectious disease that results_in infection located_in intestine caused by eating food contaminated with enterotoxins produced by bacteria, has_material_basis_in Staphylococcus aureus. The infection has_symptom diarrhea, has_symptom vomiting, has_symptom nausea, has_symptom cramps, and has_symptom weakness.
imported from: doid.owl

ophthalmia neonatorum
type: Class
subclass of: bacterial conjunctivitis
definition: A bacterial conjuctivitis that is characterized by pain and tenderness in the eyeball and conjuctival discharge.
imported from: doid.owl

bacterial conjunctivitis
type: Class
subclass of: bacterial infectious disease
subclass of: conjunctivitis
imported from: doid.owl

renal tuberculosis
type: Class
subclass of: urogenital tuberculosis
subclass of: kidney disease
definition: An urogenital tuberculosis that results_in formation of granulomas located_in kidney.
imported from: doid.owl

upper respiratory tract disease
type: Class
subclass of: respiratory system disease
definition: A respiratory system disease which involves the upper respiratory tract.
imported from: doid.owl

tuberculous peritonitis
type: Class
subclass of: gastrointestinal tuberculosis
definition: A gastrointestinal tuberculosis that results_in inflammation located_in peritoneum, which results in formation of tubercles. The infection has_symptom abdominal discomfort, has_symptom pain, has_symptom distention from gas or fluid, has_symptom digestive disturbances and has_symptom emaciation.
imported from: doid.owl

congenital syphilis
type: Class
subclass of: physical disorder
subclass of: syphilis
definition: A syphilis that results_in a multisystem infection in the fetus via the placenta.
imported from: doid.owl

miliary tuberculosis
type: Class
subclass of: extrapulmonary tuberculosis
definition: An extrapulmonary tuberculosis that results in formation of tiny lesions in all the organs.
imported from: doid.owl

cardiovascular syphilis
type: Class
subclass of: tertiary syphilis
definition: A tertiary syphilis that is manifested as aneurysm formation in the ascending aorta, caused by chronic inflammatory destruction of the vasa vasorum, insufficiency of the aortic valve, or narrowing of the coronary arteries.
imported from: doid.owl

internal hordeolum
type: Class
subclass of: hordeolum
imported from: doid.owl

hordeolum
type: Class
subclass of: bacterial infectious disease
subclass of: eyelid disease
definition: An eyelid disease that is characterized by an infection of the sebaceous glands at the base of the eyelashes. Styes are generally caused by a Staphylococcus aureus bacterial infection.
imported from: doid.owl

lymph node disease
type: Class
subclass of: lymphatic system disease
imported from: doid.owl

acute female pelvic peritonitis
type: Class
subclass of: pelvic inflammatory disease
imported from: doid.owl

tertiary neurosyphilis
type: Class
subclass of: spinal cord disease
subclass of: tertiary syphilis
subclass of: brain disease
definition: A tertiary syphilis that results in infection located in brain or located in spinal cord.
imported from: doid.owl

exposure to environmental system
type: Class
subclass of: exposure event
subclass of: RO_0002310
definition: A exposure event involving the interaction of an exposure receptor to environmental system.
imported from: ecto.owl
has exact synonym: environmental system exposure

exposure to construction
type: Class
subclass of: exposure event
subclass of: RO_0002310
definition: A exposure event involving the interaction of an exposure receptor to construction.
imported from: ecto.owl
has exact synonym: construction exposure

exposure to abattoir
type: Class
subclass of: exposure to construction
definition: A exposure event involving the interaction of an exposure receptor to abattoir.
imported from: ecto.owl
has exact synonym: abattoir exposure

exposure to farm
type: Class
subclass of: exposure to environmental system
definition: A exposure event involving the interaction of an exposure receptor to farm.
imported from: ecto.owl
has exact synonym: farm exposure

exposure to hospital
type: Class
subclass of: exposure to construction
definition: A exposure event involving the interaction of an exposure receptor to hospital.
imported from: ecto.owl
has exact synonym: hospital exposure

exposure to laboratory
type: Class
subclass of: exposure to construction
definition: A exposure event involving the interaction of an exposure receptor to laboratory facility.
imported from: ecto.owl
has exact synonym: laboratory facility exposure

exposure to office
type: Class
subclass of: exposure to construction
definition: A exposure event involving the interaction of an exposure receptor to office.
imported from: ecto.owl
has exact synonym: office exposure

exposure to restaurant
type: Class
subclass of: exposure to construction
definition: A exposure event involving the interaction of an exposure receptor to restaurant.
imported from: ecto.owl
has exact synonym: restaurant exposure

exposure to retail shop
type: Class
subclass of: exposure to construction
definition: A exposure event involving the interaction of an exposure receptor to shop.
imported from: ecto.owl
has exact synonym: shop exposure

exposure to organism
type: Class
subclass of: exposure event
subclass of: RO_0002310
definition: A history of exposure to root.
imported from: ecto.owl
has exact synonym: root exposure

exposure to humans
type: Class
subclass of: exposure to organism
definition: A history of exposure to Homo sapiens.
imported from: ecto.owl
has exact synonym: Homo sapiens exposure

exposure to geographic feature
type: Class
subclass of: exposure event
subclass of: RO_0002310
definition: A exposure event involving the interaction of an exposure receptor to geographic feature.
imported from: ecto.owl
has exact synonym: geographic feature exposure

exposure to petting zoo
type: Class
subclass of: exposure to geographic feature
definition: A exposure event involving the interaction of an exposure receptor to petting zoo.
imported from: ecto.owl
has exact synonym: petting zoo exposure

exposure to campground
type: Class
subclass of: exposure to geographic feature
definition: A exposure event involving the interaction of an exposure receptor to campground.
imported from: ecto.owl
has exact synonym: campground exposure

exposure to behavior
type: Class
subclass of: exposure event
subclass of: RO_0002310
definition: An exposure event involving Activity
imported from: ecto.owl
has exact synonym: Activity exposure

exposure to violence
type: Class
subclass of: exposure to behavior
definition: An exposure event involving Violence
imported from: ecto.owl
has exact synonym: Violence exposure

exposure to hunting
type: Class
subclass of: exposure event
subclass of: RO_0002310
definition: An exposure event involving hunting behavior
imported from: ecto.owl
has exact synonym: hunting behavior exposure

geographic feature
type: Class
subclass of: astronomical body part
definition: An astrononmical body part which delimited by physical discontinuities with its surroundings.
imported from: envo.owl
database_cross_reference: https://en.wikipedia.org/wiki/Geographic_feature
has exact synonym: macroscopic spatial feature
in_subset: envoPolar
comment: This class is being depopulated and will be filled only with inferred subclasses. Please do not use this for direct annotation, favouring instead a more descriptive subclass.

anthropogenic geographic feature
type: Class
subclass of: geographic feature
user interface label: constructed feature
definition: An anthropogenic geographic feature is a geographic feature resulting from the influence of human beings on nature.
imported from: envo.owl
database_cross_reference: FTT:78
database_cross_reference: TGN:50001

administrative region
type: Class
subclass of: material entity
imported from: envo.owl
database_cross_reference: FTT:1242
database_cross_reference: FTT:1252
database_cross_reference: FTT:15
database_cross_reference: FTT:16
database_cross_reference: FTT:18
database_cross_reference: FTT:19
database_cross_reference: FTT:21
database_cross_reference: FTT:22
database_cross_reference: FTT:23
database_cross_reference: FTT:24
database_cross_reference: FTT:25
database_cross_reference: FTT:26
database_cross_reference: FTT:27
database_cross_reference: FTT:28
database_cross_reference: FTT:29
database_cross_reference: FTT:37
database_cross_reference: SWEETRealm:AdministrativeRegion
database_cross_reference: TGN:80001
database_cross_reference: TGN:81099
database_cross_reference: TGN:81123
database_cross_reference: https://en.wikipedia.org/wiki/Administrative_region
has exact synonym: administrative area

first-order administrative region
type: Class
subclass of: administrative region
user interface label: state / province / territory / region
user interface feature: lookup:http://purl.obolibrary.org/obo/GAZ_00000448
definition: A primary administrative division of a country, such as a state in the United States.
imported from: envo.owl
database_cross_reference: FTT:414
database_cross_reference: FTT:569
database_cross_reference: Geonames:A.ADM1
database_cross_reference: TGN:81100

national geopolitical entity
type: Class
subclass of: political entity
definition: A political association with effective dominion over a geographic area.
imported from: envo.owl
database_cross_reference: FTT:424
database_cross_reference: FTT:566
database_cross_reference: FTT:567
database_cross_reference: FTT:571
database_cross_reference: SWEETRealm:Country
database_cross_reference: SWEETRealm:State
database_cross_reference: TGN:80006
database_cross_reference: TGN:81010
database_cross_reference: TGN:81011
database_cross_reference: TGN:81102
database_cross_reference: https://en.wikipedia.org/wiki/Nation
has exact synonym: http://purl.obolibrary.org/obo/NCIT_C25464
has exact synonym: nation
has_narrow_synonym: independent nation
has_narrow_synonym: independent political entity
has_narrow_synonym: independent sovereign nation

transport feature
type: Class
subclass of: human construction
definition: A construction which enables the movement of humans, their animals or their vehicles.
imported from: envo.owl
database_cross_reference: FTT:83

garden
type: Class
subclass of: anthropogenic geographic feature
definition: An enclosure for displaying selected plant or animal life.
imported from: envo.owl
database_cross_reference: FTT:31
database_cross_reference: FTT:743
database_cross_reference: Geonames:S.GDN
database_cross_reference: TGN:53010
database_cross_reference: https://en.wikipedia.org/wiki/Garden

hydrographic feature
type: Class
subclass of: geographic feature
subclass of: RO_0002577
definition: A geographical feature associated with water.
imported from: envo.owl
database_cross_reference: FTT:131
database_cross_reference: FTT:280
database_cross_reference: FTT:711
database_cross_reference: FTT:761
database_cross_reference: FTT:824
database_cross_reference: FTT:825
database_cross_reference: FTT:826
database_cross_reference: FTT:827
database_cross_reference: FTT:828
database_cross_reference: FTT:829
database_cross_reference: Geonames:H.OVF
in_subset: envoPolar

canal
type: Class
subclass of: watercourse
subclass of: artificial channel
definition: Artificial watercourse with no flow or a controlled flow used for navigation, drainage or irrigation.
imported from: envo.owl
database_cross_reference: EcoLexicon:canal
database_cross_reference: FTT:129
database_cross_reference: FTT:395
database_cross_reference: FTT:407
database_cross_reference: FTT:408
database_cross_reference: Geonames:H.CNL
database_cross_reference: SWEETRealm:Canal
database_cross_reference: TGN:51252
database_cross_reference: https://en.wikipedia.org/wiki/Canal
comment: This class refers to the water contained in a canal channel, and not the channel itself.

ocean
type: Class
subclass of: marine water body
subclass of: saline water body
subclass of: untreated water
definition: A marine water body which is constitutes the majority of an astronomical body's hydrosphere.
imported from: envo.owl
database_cross_reference: EcoLexicon:ocean
database_cross_reference: FTT:1019
database_cross_reference: FTT:943
database_cross_reference: Geonames:H.OCN
database_cross_reference: LTER:695
database_cross_reference: SWEETRealm:Ocean
database_cross_reference: TGN:21102
database_cross_reference: https://en.wikipedia.org/wiki/Ocean
in_subset: envoMarine
in_subset: envoPolar

sea
type: Class
subclass of: marine water body
subclass of: saline water body
definition: A large expanse of saline water usually connected with an ocean.
imported from: envo.owl
database_cross_reference: EcoLexicon:sea
database_cross_reference: FTT:233
database_cross_reference: FTT:830
database_cross_reference: Geonames:H.SEA
database_cross_reference: TGN:21103
database_cross_reference: https://en.wikipedia.org/wiki/Sea
has_narrow_synonym: channel
has_narrow_synonym: closed sea
has_narrow_synonym: marginal sea
has_narrow_synonym: open sea
has_narrow_synonym: open sound
has_narrow_synonym: open water
in_subset: envoMarine
in_subset: envoPolar

lake
type: Class
subclass of: lentic water body
subclass of: untreated water
definition: A body of water or other liquid of considerable size contained in a depression on a landmass.
imported from: envo.owl
database_cross_reference: EcoLexicon:lake
database_cross_reference: FTT:221
database_cross_reference: FTT:704
database_cross_reference: FTT:909
database_cross_reference: Geonames:H.LK
database_cross_reference: Geonames:H.LKS
database_cross_reference: LTER:278
database_cross_reference: SPIRE:Lake_or_pond
database_cross_reference: SWEETRealm:Lake
database_cross_reference: TGN:21114
database_cross_reference: TGN:21115
has_narrow_synonym: catch basin
has_narrow_synonym: open water
has_narrow_synonym: tarn
in_subset: envoPolar

river
type: Class
subclass of: stream
definition: A stream which, through permanent or seasonal flow processes, moves from elevated land towards lower elevations through a definite channel and empties either into a sea, lake, or another river or ends on land as bed seepage and evapotranspiration exceed water supply.
imported from: envo.owl
database_cross_reference: EcoLexicon:river
database_cross_reference: FTT:1179
database_cross_reference: FTT:251
database_cross_reference: LTER:474
database_cross_reference: SPIRE:River
database_cross_reference: SWEETRealm:River
database_cross_reference: TGN:21105
has exact synonym: rio
has_narrow_synonym: braided river
comment: "There are no official definitions for the generic term river as applied to geographic features, although in some countries or communities a stream is defined by its size. Many names for small rivers are specific to geographic location; examples are "run" in some parts of the United States, "burn" in Scotland and northeast England, and "beck" in northern England. Sometimes a river is defined as being larger than a creek, but not always: the language is vague."

stream
type: Class
subclass of: watercourse
subclass of: untreated water
definition: A watercourse which is linear and flows across the solid portion of a planetary surface.
imported from: envo.owl
has_broad_synonym: watercourse
database_cross_reference: EcoLexicon:stream
database_cross_reference: FTT:105
database_cross_reference: FTT:1221
database_cross_reference: FTT:1225
database_cross_reference: FTT:1261
database_cross_reference: FTT:303
database_cross_reference: FTT:371
database_cross_reference: FTT:593
database_cross_reference: FTT:721
database_cross_reference: Geonames:H.STM
database_cross_reference: Geonames:H.STMS
database_cross_reference: LTER:562
database_cross_reference: SWEETRealm:Stream
database_cross_reference: TGN:21106
database_cross_reference: TGN:21107
database_cross_reference: TGN:21108
database_cross_reference: TGN:21109
database_cross_reference: https://en.wikipedia.org/wiki/Stream
has exact synonym: streams
has_narrow_synonym: braided stream
has_narrow_synonym: fork (hydrographic
has_narrow_synonym: lode
has_narrow_synonym: millstream
has_narrow_synonym: stream bend
has_narrow_synonym: streamlet

reservoir
type: Class
subclass of: artificial lake
definition: An artificial body of water, often contained by a dam, constructed for the purpose of water storage.
imported from: envo.owl
has_broad_synonym: lake
database_cross_reference: EcoLexicon:reservoir
database_cross_reference: FTT:587
database_cross_reference: FTT:588
database_cross_reference: FTT:882
database_cross_reference: Geonames:H.RSV
database_cross_reference: SWEETRealm:Reservoir
database_cross_reference: TGN:51259
database_cross_reference: https://en.wikipedia.org/wiki/Reservoir
has_narrow_synonym: covered reservoir

well
type: Class
subclass of: anthropogenic geographic feature
definition: A cylindrical hole, pit, or tunnel drilled or dug down to a depth from which water, oil, or gas can be pumped or brought to the surface.
imported from: envo.owl
database_cross_reference: EcoLexicon:well
database_cross_reference: FTT:1032
database_cross_reference: FTT:1237
database_cross_reference: FTT:833
database_cross_reference: Geonames:H.WLL
database_cross_reference: Geonames:H.WLLS
database_cross_reference: SWEETRealm:Well
database_cross_reference: TGN:51255
database_cross_reference: https://en.wikipedia.org/wiki/Well

spring
type: Class
subclass of: surface landform
subclass of: untreated water
definition: A surface landform which provides an egress for groundwater or steam to flow out of the ground.
imported from: envo.owl
database_cross_reference: EcoLexicon:spring
database_cross_reference: FTT:982
database_cross_reference: Geonames:H.SPNG
database_cross_reference: SWEETRealm:Spring
database_cross_reference: TGN:21126
comment: Springs are typically where an aquifer surface meets the ground surface or where there is a fissure.

watercourse
type: Class
subclass of: lotic water body
definition: A flowing body of water.
imported from: envo.owl
database_cross_reference: EcoLexicon:brook
database_cross_reference: EcoLexicon:course
database_cross_reference: EcoLexicon:culvert
database_cross_reference: EcoLexicon:gully
database_cross_reference: EcoLexicon:ravine
database_cross_reference: EcoLexicon:spillway
database_cross_reference: EcoLexicon:waterway
database_cross_reference: FTT:105
database_cross_reference: Geonames:H.NRWS
database_cross_reference: Geonames:H.RCH
database_cross_reference: Geonames:H.WTRC
database_cross_reference: Geonames:S.SPLY
database_cross_reference: TGN:21110
database_cross_reference: TGN:21131
database_cross_reference: TGN:21133
database_cross_reference: TGN:21137
database_cross_reference: TGN:21163
database_cross_reference: TGN:21499
database_cross_reference: https://en.wikipedia.org/wiki/Watercourse
has_narrow_synonym: culvert
has_narrow_synonym: dredged channel
has_narrow_synonym: fork
has_narrow_synonym: gulch
has_narrow_synonym: gully
has_narrow_synonym: gut
has_narrow_synonym: gutter
has_narrow_synonym: kill
has_narrow_synonym: lode
has_narrow_synonym: narrows
has_narrow_synonym: overflow channel
has_narrow_synonym: passage
has_narrow_synonym: pup
has_narrow_synonym: race
has_narrow_synonym: ravine
has_narrow_synonym: reach
has_narrow_synonym: rill
has_narrow_synonym: rivulet
has_narrow_synonym: run
has_narrow_synonym: runnel
has_narrow_synonym: seachannel
has_narrow_synonym: seaway
has_narrow_synonym: spillway
has_narrow_synonym: stream
has_narrow_synonym: tideway
has_narrow_synonym: wash
has_narrow_synonym: water gap

bay
type: Class
subclass of: coastal inlet
definition: An area of water bordered by land on three sides.
imported from: envo.owl
database_cross_reference: EcoLexicon:bay
database_cross_reference: FTT:190
database_cross_reference: FTT:232
database_cross_reference: FTT:235
database_cross_reference: Geonames:H.BAY
database_cross_reference: Geonames:H.BAYS
database_cross_reference: Geonames:H.BGHT
database_cross_reference: SWEETRealm:Bay
database_cross_reference: TGN:21121
database_cross_reference: TGN:21123
database_cross_reference: TGN:21127

pond
type: Class
subclass of: lentic water body
definition: A body of water, usually of smaller size than a lake.
imported from: envo.owl
has_broad_synonym: lake
database_cross_reference: EcoLexicon:pond
database_cross_reference: FTT:221
database_cross_reference: FTT:902
database_cross_reference: FTT:904
database_cross_reference: FTT:905
database_cross_reference: Geonames:H.PND
database_cross_reference: Geonames:H.PNDS
database_cross_reference: Geonames:H.POOL
database_cross_reference: LTER:975
database_cross_reference: SPIRE:Lake_or_pond
database_cross_reference: SWEETRealm:Pond
database_cross_reference: TGN:21104
database_cross_reference: TGN:21119
database_cross_reference: https://en.wikipedia.org/wiki/Pond
has exact synonym: Pond
has_narrow_synonym: pool (water body)

ditch
type: Class
subclass of: artificial channel
definition: A small, human-made channel which has been dug for draining or irrigating the land.
imported from: envo.owl
database_cross_reference: EcoLexicon:drain
database_cross_reference: FTT:129
database_cross_reference: FTT:400
database_cross_reference: FTT:403
database_cross_reference: Geonames:DTCH
database_cross_reference: SWEETRealm:Drain
database_cross_reference: TGN:51256
database_cross_reference: https://en.wikipedia.org/wiki/Ditch

drainage canal
type: Class
subclass of: canal
definition: Artificial watercourse with no flow or a controlled flow used drainage.
imported from: envo.owl
has_broad_synonym: canal
database_cross_reference: FTT:129
database_cross_reference: FTT:401
database_cross_reference: Geonames:H.CNLD

wetland area
type: Class
subclass of: vegetated area
definition: An vegetated area which overlaps a wetland ecosystem.
imported from: envo.owl

populated place
type: Class
subclass of: environmental zone
definition: Place or area with clustered or scattered buildings and a permanent human population.
imported from: envo.owl
has_broad_synonym: place
database_cross_reference: FTT:1097
database_cross_reference: FTT:33
database_cross_reference: Geonames:P.PPL
database_cross_reference: Geonames:P.PPLS
database_cross_reference: TGN:22201
database_cross_reference: TGN:83002
database_cross_reference: https://en.wikipedia.org/wiki/Populated_place
has exact synonym: populated places
has exact synonym: settlement

water body
type: Class
subclass of: water mass
definition: An accumulation of water of varying size.
imported from: envo.owl
has_broad_synonym: hydrographic feature
database_cross_reference: EcoLexicon:waterbody
database_cross_reference: FTT:131
database_cross_reference: FTT:280
database_cross_reference: FTT:827
database_cross_reference: SWEETRealm:BodyOfWater
database_cross_reference: TGN:21100
database_cross_reference: TGN:21101
database_cross_reference: https://en.wikipedia.org/wiki/Water_body
has exact synonym: aquatic feature
has exact synonym: bodies of water
has exact synonym: body of water
has exact synonym: waterbody
comment: The term body of water most often refers to large accumulations of water, such as oceans, seas, and lakes, but it includes smaller pools of water such as ponds, wetlands, or more rarely, puddles. A body of water does not have to be still or contained; Rivers, streams, canals, and other geographical features where water moves from one place to another are also considered bodies of water.

cave
type: Class
subclass of: surface landform
definition: Naturally formed, subterranean open area or chamber.
imported from: envo.owl
database_cross_reference: FTT:1071
database_cross_reference: FTT:443
database_cross_reference: FTT:445
database_cross_reference: FTT:446
database_cross_reference: FTT:447
database_cross_reference: Geonames:S.CAVE
database_cross_reference: SWEETRealm:Cave
database_cross_reference: TGN:21485
database_cross_reference: TGN:21486
database_cross_reference: https://en.wikipedia.org/wiki/Cave

tunnel
type: Class
subclass of: channel
definition: An underground or underwater passage.
imported from: envo.owl
database_cross_reference: FTT:445
database_cross_reference: FTT:448
database_cross_reference: Geonames:R.TNLN
database_cross_reference: SWEETRealm:Tunnel
database_cross_reference: TGN:21447
database_cross_reference: https://en.wikipedia.org/wiki/Tunnel
has exact synonym: TUNNEL

human construction
type: Class
subclass of: astronomical body part
subclass of: construction
definition: A construction that has been assembled by deliberate human effort.
imported from: envo.owl
has exact synonym: constructed feature

building
type: Class
subclass of: human construction
definition: A permanent walled and roofed construction.
imported from: envo.owl
database_cross_reference: FTT:42
database_cross_reference: Geonames:S.BLDG
database_cross_reference: LTER:76
database_cross_reference: TGN:51011
database_cross_reference: https://en.wikipedia.org/wiki/Building

dam
type: Class
subclass of: constructed barrier
definition: A barrier constructed across a watercourse to control the flow or raise the level of water.
imported from: envo.owl
database_cross_reference: EcoLexicon:dam
database_cross_reference: FTT:599
database_cross_reference: FTT:600
database_cross_reference: Geonames:S.DAM
database_cross_reference: SWEETRealm:Dam
database_cross_reference: TGN:51253
database_cross_reference: https://en.wikipedia.org/wiki/Dam

mine
type: Class
subclass of: human construction
definition: An excavation in the Earth for the purpose of extracting earth materials.
imported from: envo.owl
database_cross_reference: EcoLexicon:mine
database_cross_reference: FTT:14
database_cross_reference: FTT:968
database_cross_reference: Geonames:L.MNA
database_cross_reference: Geonames:S.MN
database_cross_reference: TGN:54211
database_cross_reference: TGN:54212

agricultural ecosystem
type: Class
subclass of: anthropised ecosystem
imported from: envo.owl
database_cross_reference: FTT:1246
database_cross_reference: FTT:1247
database_cross_reference: FTT:44
database_cross_reference: FTT:45
database_cross_reference: FTT:46
database_cross_reference: FTT:48
database_cross_reference: FTT:50
database_cross_reference: FTT:51
database_cross_reference: FTT:52
database_cross_reference: FTT:57
database_cross_reference: FTT:60
database_cross_reference: FTT:62
database_cross_reference: FTT:63
database_cross_reference: FTT:64
database_cross_reference: FTT:72
database_cross_reference: FTT:74
database_cross_reference: Geonames:L.AGRC
database_cross_reference: Geonames:L.RESA
database_cross_reference: Geonames:S.NSY
database_cross_reference: TGN:55001
has_narrow_synonym: barn
has_narrow_synonym: cattle dipping tank
has_narrow_synonym: corral
has_narrow_synonym: dairy
has_narrow_synonym: feedlot
has_narrow_synonym: grange
has_narrow_synonym: grazing allotment
has_narrow_synonym: irrigated field
has_narrow_synonym: nursery
has_narrow_synonym: pastoral site
has_narrow_synonym: sheepfold
has_narrow_synonym: stockyard
comment: As with other classes that are "features", the subclasses of this class are being moved to more informative locations. Their relation to agriculture will be modelled by something more akin to a quality or relation to an agricultural process.

farm
type: Class
subclass of: agricultural ecosystem
subclass of: outbreak animal exposure event location
definition: An area of land which is used for the cultivation of crops or grazing of livestock, including any agricultural constructions therein.
imported from: envo.owl
has_broad_synonym: agricultural site
database_cross_reference: FTT:45
database_cross_reference: FTT:58
database_cross_reference: FTT:59
database_cross_reference: FTT:69
database_cross_reference: Geonames:S.FRM
database_cross_reference: Geonames:S.FRMS
database_cross_reference: Geonames:S.RNCH
database_cross_reference: TGN:54011
database_cross_reference: https://en.wikipedia.org/wiki/Farm
has exact synonym: FARM

mountain range
type: Class
subclass of: range of mounts
definition: A range of mounts which is dominated by mountains.
imported from: envo.owl
database_cross_reference: EcoLexicon:mountain_range
database_cross_reference: FTT:548
database_cross_reference: FTT:995
database_cross_reference: FTT:997
database_cross_reference: Geonames:MTS
database_cross_reference: SWEETRealm:MountainRange
database_cross_reference: TGN:21431
database_cross_reference: TGN:21432
database_cross_reference: https://en.wikipedia.org/wiki/Mountain_range
in_subset: envoPolar

plain
type: Class
subclass of: surface landform
definition: A region of general uniform slope, comparatively level, and of considerable extent.
imported from: envo.owl
database_cross_reference: EcoLexicon:plain
database_cross_reference: FTT:707
database_cross_reference: FTT:874
database_cross_reference: FTT:926
database_cross_reference: Geonames:T.PLN
database_cross_reference: SWEETRealm:Plain
database_cross_reference: TGN:21461
database_cross_reference: https://en.wikipedia.org/wiki/Plain

beach
type: Class
subclass of: surface landform
definition: A landform consisting of loose rock particles such as sand, gravel, shingle, pebbles, cobble, or even shell fragments along the shoreline of a body of water.
imported from: envo.owl
database_cross_reference: EcoLexicon:beach
database_cross_reference: EcoLexicon:to_beach
database_cross_reference: FTT:237
database_cross_reference: FTT:239
database_cross_reference: Geonames:T.BCH
database_cross_reference: Geonames:T.BCHS
database_cross_reference: SWEETRealm:Beach
database_cross_reference: TGN:21482
database_cross_reference: https://en.wikipedia.org/wiki/Beach
has exact synonym: Beach
has_narrow_synonym: beach berm
has_narrow_synonym: lagoon beach

desert area
type: Class
subclass of: area of barren land
definition: A region rendered barren or partially barren by environmental extremes, especially by low rainfall.
imported from: envo.owl
database_cross_reference: EcoLexicon:desert
database_cross_reference: FTT:1
database_cross_reference: FTT:188
database_cross_reference: Geonames:T.DSRT
database_cross_reference: LTER:147
database_cross_reference: SWEETRealm:Desert
database_cross_reference: TGN:21201
database_cross_reference: https://en.wikipedia.org/wiki/Desert
in_subset: envoPolar

island
type: Class
subclass of: planetary landmass
definition: Area of dry or relatively dry land surrounded by water or low wetland.
imported from: envo.owl
database_cross_reference: EcoLexicon:island
database_cross_reference: FTT:147
database_cross_reference: FTT:450
database_cross_reference: FTT:886
database_cross_reference: FTT:887
database_cross_reference: FTT:888
database_cross_reference: FTT:889
database_cross_reference: Geonames:T.ISL
database_cross_reference: Geonames:T.ISLS
database_cross_reference: SWEETRealm:Island
database_cross_reference: TGN:21468
database_cross_reference: TGN:21469
database_cross_reference: TGN:21471
database_cross_reference: TGN:21475
database_cross_reference: https://en.wikipedia.org/wiki/Island
in_subset: envoPolar

undersea feature
type: Class
subclass of: hydrographic feature
definition: A hydrographic feature which is located below the surface of a marine water body.
imported from: envo.owl
database_cross_reference: EcoLexicon:fan
database_cross_reference: EcoLexicon:platform
database_cross_reference: EcoLexicon:ravine
database_cross_reference: FTT:1020
database_cross_reference: FTT:1137
database_cross_reference: FTT:1176
database_cross_reference: FTT:1193
database_cross_reference: FTT:1194
database_cross_reference: FTT:1195
database_cross_reference: FTT:1196
database_cross_reference: FTT:5
database_cross_reference: FTT:810
database_cross_reference: FTT:984
database_cross_reference: Geonames:FRKU
database_cross_reference: Geonames:FRSU
database_cross_reference: Geonames:MDVU
database_cross_reference: Geonames:PLFU
database_cross_reference: Geonames:RAVU
database_cross_reference: Geonames:RMPU
database_cross_reference: Geonames:U.BSNU
database_cross_reference: Geonames:U.EDGU
database_cross_reference: Geonames:U.ESCU
database_cross_reference: Geonames:U.FANU
database_cross_reference: Geonames:U.FLTU
database_cross_reference: Geonames:U.FURU
database_cross_reference: Geonames:U.GAPU
database_cross_reference: Geonames:U.GLYU
database_cross_reference: Geonames:U.HOLU
database_cross_reference: Geonames:U.LDGU
database_cross_reference: Geonames:U.LEVU
database_cross_reference: Geonames:U.PLNU
database_cross_reference: Geonames:U.PLTU
database_cross_reference: Geonames:U.PNLU
database_cross_reference: Geonames:U.PRVU
database_cross_reference: Geonames:U.RDGU
database_cross_reference: Geonames:U.RDSU
database_cross_reference: Geonames:U.RISU
database_cross_reference: Geonames:U.SDLU
database_cross_reference: Geonames:U.SHVU
database_cross_reference: Geonames:U.SILU
database_cross_reference: Geonames:U.SPRU
database_cross_reference: Geonames:U.TERU
database_cross_reference: Geonames:U.VALU
database_cross_reference: Geonames:U.VLSU
database_cross_reference: TGN:23001
database_cross_reference: TGN:23116
database_cross_reference: TGN:23117
database_cross_reference: TGN:23118
database_cross_reference: TGN:23135
database_cross_reference: TGN:23162
database_cross_reference: TGN:23181
database_cross_reference: TGN:23182
database_cross_reference: TGN:23183
database_cross_reference: TGN:23184
database_cross_reference: TGN:23188
database_cross_reference: TGN:23192
database_cross_reference: TGN:23193
database_cross_reference: TGN:23194
database_cross_reference: TGN:23195
database_cross_reference: TGN:23196
database_cross_reference: TGN:23211
database_cross_reference: TGN:23212
database_cross_reference: TGN:23301
database_cross_reference: TGN:23411
database_cross_reference: TGN:23412
database_cross_reference: TGN:23413
database_cross_reference: TGN:23415
database_cross_reference: TGN:23421
database_cross_reference: TGN:23423
database_cross_reference: TGN:23424
database_cross_reference: TGN:23431
database_cross_reference: TGN:23453
database_cross_reference: TGN:23461
database_cross_reference: TGN:23463
database_cross_reference: TGN:23467
database_cross_reference: TGN:23550

grassland area
type: Class
subclass of: vegetated area
definition: An area in which grasses (Graminae) are a significant component of the vegetation.
imported from: envo.owl

woodland area
type: Class
subclass of: vegetated area
definition: Land having a cover of trees, shrubs, or both.
imported from: envo.owl
database_cross_reference: FTT:1083
database_cross_reference: FTT:505
database_cross_reference: FTT:506
database_cross_reference: FTT:719
database_cross_reference: FTT:774
database_cross_reference: Geonames:V.GRVPN
database_cross_reference: LTER:503
database_cross_reference: SWEETRealm:Break
database_cross_reference: SWEETRealm:Scrub
database_cross_reference: TGN:21631
database_cross_reference: TGN:21632
database_cross_reference: TGN:21641
database_cross_reference: https://en.wikipedia.org/wiki/Woodland
has_narrow_synonym: brigalow
has_narrow_synonym: pine grove

forested area
type: Class
subclass of: woodland area
definition: An area with a high density of trees. A small forest may be called a wood.
imported from: envo.owl
database_cross_reference: EcoLexicon:forest
database_cross_reference: FTT:258
database_cross_reference: FTT:506
database_cross_reference: FTT:715
database_cross_reference: FTT:717
database_cross_reference: Geonames:V.FRST
database_cross_reference: LTER:2
database_cross_reference: SWEETRealm:Forest
database_cross_reference: TGN:21641
database_cross_reference: TGN:21642
database_cross_reference: TGN:21645
database_cross_reference: https://en.wikipedia.org/wiki/Forest
comment: The definitions of forest can vary greatly, and different classes will be needed to support the major categories. Tree cover alone is not enough to distinguish between forests and plantations. The international definition proposed by the 2010 FAO Forestry Resource Assessment: "land spanning more than 0.5 ha with trees higher than 5 metres and canopy cover of more than 10 percent, or trees able to reach these thresholds in situ . It does not include land that is predominantly under agricultural or urban land use." - FAO. 2010. Global forest resources assessment 2010, Main report, FAO Forestry Paper 163. Rome.

area of tundra
type: Class
subclass of: vegetated area
definition: A vegetated area which is part of a tundra ecosystem.
imported from: envo.owl
database_cross_reference: Tundra
database_cross_reference: http://www.eionet.europa.eu/gemet/concept/8704
database_cross_reference: EcoLexicon:tundra
database_cross_reference: FTT:151
database_cross_reference: FTT:152
database_cross_reference: Geonames:V.TUND
database_cross_reference: LTER:605
database_cross_reference: TGN:21611
in_subset: envoPolar

agricultural field
type: Class
subclass of: field
definition: A field which is located on land and used for agricultural purposes, such as the grazing of livestock or the cultivation of crops.
imported from: envo.owl
has_broad_synonym: agricultural site
database_cross_reference: EcoLexicon:field
database_cross_reference: FTT:45
database_cross_reference: FTT:61
database_cross_reference: Geonames:L.FLD
database_cross_reference: SWEETRealm:Field
database_cross_reference: TGN:21456

plantation
type: Class
subclass of: farm
subclass of: astronomical body part
definition: An intentional planting of a crop, on a large scale, usually for uses other than cereal production or pasture. The term is currently most often used for plantings of trees and shrubs. The term tends also to be used for plantings maintained on economic bases other than that of subsistence farming.
imported from: envo.owl
database_cross_reference: FTT:45
database_cross_reference: FTT:68
database_cross_reference: TGN:54041
database_cross_reference: https://en.wikipedia.org/wiki/Plantation

artificial channel
type: Class
subclass of: human construction
subclass of: channel of a watercourse
definition: A channel of a watercource which has been constructed by humans or their technologies.
imported from: envo.owl
database_cross_reference: EcoLexicon:artificial_channel

political entity
type: Class
subclass of: fiat object
definition: A geographical region whose affairs and population are administered by an authority.
imported from: envo.owl
database_cross_reference: FTT:1093
database_cross_reference: Geonames:A.PCL
database_cross_reference: TGN:80002

badland
type: Class
subclass of: surface landform
definition: An arid terrain with clay-rich soil that has been extensively eroded by wind and water.
imported from: envo.owl
has_broad_synonym: barren land
database_cross_reference: FTT:186
database_cross_reference: FTT:187
database_cross_reference: Geonames:T.BDLD
database_cross_reference: TGN:21205
database_cross_reference: https://en.wikipedia.org/wiki/Badlands
has exact synonym: badlands

rocky reef
type: Class
subclass of: reef
definition: A ridge of rocks, lying near the surface of the sea, which may be visible at low tide, but is usually covered by water.
imported from: envo.owl
database_cross_reference: EcoLexicon:reef
database_cross_reference: FTT:202
database_cross_reference: FTT:203
database_cross_reference: FTT:729
database_cross_reference: Geonames:H.RF
database_cross_reference: Geonames:U.RFSU
database_cross_reference: Geonames:U.RFU
database_cross_reference: SPIRE:Reef
database_cross_reference: TGN:21479
database_cross_reference: https://en.wikipedia.org/wiki/Reef
has exact synonym: REEF
has_narrow_synonym: atoll reef
has_narrow_synonym: bank reef
has_narrow_synonym: barrier reef
has_narrow_synonym: fringing reef
has_narrow_synonym: shore reef
has_narrow_synonym: submerged reef

coastal inlet
type: Class
subclass of: inlet
definition: An opening of the sea into the land.
imported from: envo.owl
database_cross_reference: FTT:463
database_cross_reference: TGN:21128
in_subset: envoPolar

irrigation ditch
type: Class
subclass of: ditch
definition: A ditch that supplies water to surrounding land.
imported from: envo.owl
has_broad_synonym: canal
database_cross_reference: FTT:129
database_cross_reference: FTT:406
database_cross_reference: Geonames:H.DTCHI

drainage ditch
type: Class
subclass of: ditch
definition: A ditch that collects water from the surrounding land.
imported from: envo.owl
database_cross_reference: EcoLexicon:drainage_ditch
database_cross_reference: FTT:129
database_cross_reference: FTT:402
database_cross_reference: Geonames:H.DTCHD

solid astronomical body part
type: Class
subclass of: compound astronomical body part
definition: A part of an astronomical body which is primarily composed of solid material.
imported from: envo.owl
database_cross_reference: EcoLexicon:landform
database_cross_reference: EcoLexicon:landforms
database_cross_reference: FTT:754
database_cross_reference: FTT:96
database_cross_reference: SWEETRealm:Landform
database_cross_reference: TGN:21400
database_cross_reference: TGN:21401

oceanic island
type: Class
subclass of: island
definition: An island that does not sit on a continental shelf, and is of volcanic origin.
imported from: envo.owl
database_cross_reference: EcoLexicon:oceanic_island
database_cross_reference: https://en.wikipedia.org/wiki/Oceanic_island

pasture
type: Class
subclass of: agricultural ecosystem
subclass of: grassland ecosystem
definition: A grassland ecosystem which is used for grazing of ungulate livestock as part of a farm or ranch.
imported from: envo.owl
database_cross_reference: FTT:45
database_cross_reference: FTT:67
database_cross_reference: Geonames:L.GRAZ

watershed
type: Class
subclass of: solid astronomical body part
definition: The separation between neighbouring drainage basins (catchments). In hilly country, the divide lies along topographical peaks and ridges, but in flat country or on a high plateau (especially where the ground is marshy) the divide may be invisible - just a more or less notional line on the ground on either side of which falling raindrops will start a journey to different rivers, and even to different sides of a country or continent.
imported from: envo.owl
database_cross_reference: FTT:220
database_cross_reference: FTT:645
database_cross_reference: Geonames:T.DVD
database_cross_reference: LTER:626
database_cross_reference: SWEETRealm:Watershed
database_cross_reference: TGN:21440
database_cross_reference: https://en.wikipedia.org/wiki/Watershed
has exact synonym: divide
has exact synonym: water divide

fish farm
type: Class
subclass of: agricultural ecosystem
definition: A facility in which fish are raised commercially in tanks or enclosures, usually for food.
imported from: envo.owl
database_cross_reference: FTT:123
database_cross_reference: FTT:694
database_cross_reference: https://en.wikipedia.org/wiki/Fish_farm

fish hatchery
type: Class
subclass of: hatchery
definition: A hatchery in which the eggs of fish are hatched under artificial conditions.
imported from: envo.owl
database_cross_reference: FTT:695
database_cross_reference: https://en.wikipedia.org/wiki/Fish_hatchery

paddy field
type: Class
subclass of: agricultural field
definition: A flooded parcel of arable land used for growing rice and other semiaquatic crops.
imported from: envo.owl
database_cross_reference: https://en.wikipedia.org/wiki/Paddy_field

scrubland area
type: Class
subclass of: vegetated area
definition: Area covered with low-growing or stunted perennial vegetation and usually not mixed with trees.
imported from: envo.owl
database_cross_reference: FTT:1191
database_cross_reference: FTT:262
database_cross_reference: FTT:374
database_cross_reference: FTT:473
database_cross_reference: FTT:792
database_cross_reference: FTT:991
database_cross_reference: Geonames:V.SCRB
database_cross_reference: SWEETRealm:Scrub
database_cross_reference: TGN:21644
database_cross_reference: TGN:21652
database_cross_reference: https://en.wikipedia.org/wiki/Scrubland
has exact synonym: scrubland

depressed landform
type: Class
subclass of: landform
definition: A landform sunken or depressed below the surrounding area.
imported from: envo.owl
has_broad_synonym: depression
database_cross_reference: EcoLexicon:depression
database_cross_reference: FTT:175
database_cross_reference: FTT:215
database_cross_reference: FTT:216
database_cross_reference: Geonames:T.DPR
database_cross_reference: Geonames:T.PAN
database_cross_reference: Geonames:T.PANS
database_cross_reference: SWEETRealm:Depression
database_cross_reference: TGN:21454
database_cross_reference: TGN:21497
database_cross_reference: TGN:21521

artificial lake
type: Class
subclass of: lake
subclass of: human construction
definition: A lake purposefully constructed.
imported from: envo.owl
database_cross_reference: https://en.wikipedia.org/wiki/Artificial_lake

channel of a watercourse
type: Class
subclass of: depressed landform
definition: A depressed landform which physically confines a river, slough or ocean strait, and which consists of a bed and banks.
imported from: envo.owl
database_cross_reference: EcoLexicon:channel
database_cross_reference: EcoLexicon:sea_channel
database_cross_reference: FTT:1192
database_cross_reference: FTT:233
database_cross_reference: FTT:461
database_cross_reference: FTT:462
database_cross_reference: FTT:463
database_cross_reference: FTT:464
database_cross_reference: FTT:465
database_cross_reference: FTT:466
database_cross_reference: FTT:468
database_cross_reference: FTT:469
database_cross_reference: FTT:470
database_cross_reference: Geonames:H.CHN
database_cross_reference: Geonames:U.SCNU
database_cross_reference: Geonames:U.SCSU
database_cross_reference: SWEETRealm:Channel
database_cross_reference: TGN:21137
database_cross_reference: TGN:23451

biome
type: Class
subclass of: astronomical body part
subclass of: ecosystem
definition: A biome is an ecosystem which is undergoing climactic ecological succession.
imported from: envo.owl
database_cross_reference: EcoLexicon:biome
database_cross_reference: LTER:809
has exact synonym: major habitat type
comment: In this definition, there is an assumption that no major perturbations are occurring or have occurred in a time frame affects the successional dynamics of the ecosystem. A "major" perturbation is one which disrupts the community's ability to restore its (near) equilibrium. Usually, pioneer or early secondary successional processes would be in effect in such scenarios.

woodland clearing
type: Class
subclass of: field
definition: A tract of land which has few or no trees and is surrounded by more heavily wooded areas.
imported from: envo.owl
database_cross_reference: FTT:259
database_cross_reference: FTT:488
database_cross_reference: Geonames:L.CLG
database_cross_reference: LTER:79
database_cross_reference: TGN:21651
has exact synonym: CLEARING
has exact synonym: clearing
has_narrow_synonym: forest clearing
comment: There should be a better superclass than "field" which should indicate that there are no woody plants in growth form "tree" around.

terrestrial biome
type: Class
subclass of: biome
subclass of: terrestrial ecosystem
definition: A biome which is primarily or completely situated on a landmass.
imported from: envo.owl
database_cross_reference: LTER:798
database_cross_reference: SPIRE:Terrestrial

marine biome
type: Class
subclass of: aquatic biome
subclass of: marine ecosystem
definition: An aquatic biome which is determined by a marine water body.
imported from: envo.owl
database_cross_reference: SPIRE:Marine
in_subset: envoPolar
comment: This biome includes open-ocean and unprotected coastal ecosystems, characterized by exposure to wave action, tidal fluctuation, and ocean currents as well as systems that largely resemble these. Water in the marine biome is generally within the salinity range of seawater: 30 to 38 ppt.

irrigation reservoir
type: Class
subclass of: reservoir
definition: A reservoir constructed for the purpose of providing water for irrigation.
imported from: envo.owl
has exact synonym: irrigation pond

research facility
type: Class
subclass of: human construction
definition: A facility, permanent or temporary, on land, in air, space or water, where scientific research or measurements can be undertaken.
imported from: envo.owl

inlet
type: Class
subclass of: hydrographic feature
definition: An opening of the sea into the land, or of a lake into its shore.
imported from: envo.owl
database_cross_reference: EcoLexicon:inlet
database_cross_reference: FTT:233
database_cross_reference: FTT:463
database_cross_reference: Geonames:H.GULF
database_cross_reference: Geonames:H.INLT
database_cross_reference: SWEETRealm:Inlet
database_cross_reference: TGN:21128
in_subset: envoPolar

range of mounts
type: Class
subclass of: field
definition: A field which includes at least two mounts connected by high ground and arranged in an approximately linear fashion.
imported from: envo.owl
database_cross_reference: FTT:996
in_subset: envoPolar

terrace
type: Class
subclass of: surface landform
definition: A step-like feature between higher and lower ground: a relatively flat or gently inclined shelf of earth, backed and fronted by steep slopes or manmade detaining walls.
imported from: envo.owl
database_cross_reference: EcoLexicon:terrace
database_cross_reference: FTT:247
database_cross_reference: FTT:248
database_cross_reference: Geonames:T.BNCH
database_cross_reference: Geonames:T.TRR
database_cross_reference: TGN:21498
database_cross_reference: TGN:21513
database_cross_reference: https://en.wikipedia.org/wiki/Terrace
has exact synonym: TERRACE
has_narrow_synonym: bench
has_narrow_synonym: ledge
has_narrow_synonym: rock terrace
has_narrow_synonym: terrace

agricultural terrace
type: Class
subclass of: agricultural ecosystem
subclass of: terrace
definition: A terrace which is used for agricultural activities.
imported from: envo.owl

lake sediment
type: Class
subclass of: sediment
definition: Lake sediment is sediment which covers the bottom of a lake. Lake sediments are comprised mainly of clastic material (sediment of clay, silt, and sand sizes), organic debris, chemical precipitates, or combinations of these.
imported from: envo.owl

gravel field
type: Class
subclass of: solid astronomical body part
subclass of: field
definition: A field which is composed primarily of gravel.
imported from: envo.owl
database_cross_reference: Geonames:L.GVL
database_cross_reference: TGN:21502

park
type: Class
subclass of: anthropogenic geographic feature
definition: A bounded area of land, or water, usually in its natural or semi-natural (landscaped) state and set aside for some purpose, usually to do with recreation or conservation.
imported from: envo.owl

pier
type: Class
subclass of: transport feature
definition: A raised walkway over water, supported by piles or pillars.
imported from: envo.owl
database_cross_reference: EcoLexicon:pier

sports facility
type: Class
subclass of: human construction
definition: A building or region where sports activities can be carried out.
imported from: envo.owl

city
type: Class
subclass of: dense settlement
definition: Incorporated populated place.
imported from: envo.owl
imported from: gaz.owl
has_broad_synonym: urban area
database_cross_reference: EcoLexicon:city
database_cross_reference: FTT:430
database_cross_reference: FTT:483
database_cross_reference: FTT:484
database_cross_reference: FTT:485
database_cross_reference: SWEETRealm:City
database_cross_reference: TGN:83020
database_cross_reference: TGN:83040
database_cross_reference: TGN:83043
database_cross_reference: https://en.wikipedia.org/wiki/City
has exact synonym: http://purl.obolibrary.org/obo/NCIT_C80234

freshwater biome
type: Class
subclass of: aquatic biome
subclass of: freshwater ecosystem
definition: An aquatic biome which is determined by a body of freshwater.
imported from: envo.owl
database_cross_reference: SPIRE:Freshwater
in_subset: envoPolar

rock
type: Class
subclass of: solid environmental material
definition: A rock is a naturally occurring solid aggregate of one or more minerals or mineraloids.
imported from: envo.owl
database_cross_reference: EcoLexicon:rock
database_cross_reference: FTT:1010
database_cross_reference: FTT:145
database_cross_reference: Geonames:T.RK
database_cross_reference: Geonames:T.RKS
database_cross_reference: SWEETRealm:Rock
database_cross_reference: TGN:21444
database_cross_reference: https://en.wikipedia.org/wiki/Rock
comment: From https://en.wikipedia.org/wiki/ [A mineral] is different from a rock, which can be an aggregate of minerals or non-minerals and does not have a specific chemical composition. The exact definition of a mineral is under debate, especially with respect to the requirement a valid species be abiogenic, and to a lesser extent with regards to it having an ordered atomic structure.

soil
type: Class
subclass of: environmental material
subclass of: astronomical body part
definition: An environmental material which is primarily composed of minerals, varying proportions of sand, silt, and clay, organic material such as humus, interstitial gases, liquids, and a broad range of resident micro- and macroorganisms.
imported from: envo.owl
has_broad_synonym: regolith
database_cross_reference: LTER:535
database_cross_reference: SPIRE:Soil
database_cross_reference: SWEETRealm:Soil
database_cross_reference: https://en.wikipedia.org/wiki/Soil
in_subset: EnvO-Lite-GSC
comment: 'In engineering terms, soil is referred to as regolith, or loose rock material that lies above the 'solid geology'. Soil is commonly referred to as "earth" or "dirt"; technically, the term "dirt" should be restricted to displaced soil.' https://en.wikipedia.org/wiki/Soil " The upper limit of soil is the boundary between soil and air, shallow water, live plants, or plant materials that have not begun to decompose. Areas are not considered to have soil if the surface is permanently covered by water too deep (typically more than 2.5 meters) for the growth of rooted plants. The lower boundary that separates soil from the nonsoil underneath is most difficult to define. Soil consists of horizons near the Earth's surface that, in contrast to the underlying parent material, have been altered by the interactions of climate, relief, and living organisms over time. Commonly, soil grades at its lower boundary to hard rock or to earthy materials virtually devoid of animals, roots, or other marks of biological activity. For purposes of classification, the lower boundary of soil is arbitrarily set at 200 cm." Soil taxonomy, 2nd Ed., quoted in http://www.nrcs.usda.gov/wps/portal/nrcs/detail/soils/edu/?cid=nrcs142p2_054280

marine water body
type: Class
subclass of: lentic water body
definition: A lentic water body which is composed primarily of marine water.
imported from: envo.owl
has exact synonym: body of marine water
has exact synonym: marine waterbody

slope
type: Class
subclass of: landform
definition: A solid astronomical body part which is part of the planetary surface between the peak of an elevation or the bottom of a depression and relatively flat surrounding land.
imported from: envo.owl
database_cross_reference: EcoLexicon:slope
database_cross_reference: SWEETRealm:Slope
database_cross_reference: https://en.wikipedia.org/wiki/Slope

waste water
type: Class
subclass of: contaminated water
subclass of: waste material
definition: Water that has been adversely affected in quality by anthropogenic influence.
imported from: envo.owl
database_cross_reference: EcoLexicon:waste_water
database_cross_reference: SWEETRealm:Wastewater
database_cross_reference: https://en.wikipedia.org/wiki/Waste_water
in_subset: EnvO-Lite-GSC

fecal material
type: Class
subclass of: excreta material
definition: An excreta material which is composed primarily of feces, an excreta consisting of waste products expelled from an animal's digestive tract through the anus (or cloaca) during defecation.
imported from: envo.owl
database_cross_reference: EcoLexicon:drop
database_cross_reference: SPIRE:Dung
database_cross_reference: SWEETRealm:Drop
has exact synonym: faeces material
has exact synonym: feces material
has exact synonym: stool
comment: ENVO bodily fluid classes differ from UBERON's treatment of bodily fluids. UBERON refers to the substance itself ("S"). We assert that UBERON's classes are the primary compositional component of the terms in ENVO ("S material"). Use of the ENVO terms is typically recommended when you wish to indicate that there may be other materials intermixed with S.
comment: This is distinct from classes such as http://purl.obolibrary.org/obo/UBERON_0001988 in that it refers to the environmental material composed primarily of feces rather than 'just' feces.

air
type: Class
subclass of: gaseous environmental material
definition: The mixture of gases (roughly (by molar content/volume: 78% nitrogen, 20.95% oxygen, 0.93% argon, 0.038% carbon dioxide, trace amounts of other gases, and a variable amount (average around 1%) of water vapor) that surrounds the planet Earth.
imported from: envo.owl
database_cross_reference: EcoLexicon:air
database_cross_reference: LTER:18
database_cross_reference: SWEETRealm:Air
database_cross_reference: https://en.wikipedia.org/wiki/Air
in_subset: EnvO-Lite-GSC
in_subset: envoPolar

liquid water
type: Class
subclass of: liquid environmental material
definition: An environmental material primarily composed of dihydrogen oxide in its liquid form.
imported from: envo.owl
has_broad_synonym: water
database_cross_reference: EcoLexicon:water
database_cross_reference: LTER:617
database_cross_reference: https://en.wikipedia.org/wiki/Water

sediment
type: Class
subclass of: particulate environmental material
definition: Particulate environmental material which is formed as a result of the transport and deposition of particles by flowing liquid.
imported from: envo.owl
database_cross_reference: EcoLexicon:sediment
database_cross_reference: EcoLexicon:sedimentation
database_cross_reference: LTER:492
database_cross_reference: LTER:493
database_cross_reference: SWEETRealm:Sediment
database_cross_reference: https://en.wikipedia.org/wiki/Sediment
in_subset: EnvO-Lite-GSC
in_subset: envoPolar
comment: Sediment is typically deposited on the bed or bottom of a body of water or other liquid.

dust
type: Class
subclass of: particulate environmental material
subclass of: solid environmental material
definition: Particulate environmental material with diameters less than 500 micrometers.
imported from: envo.owl
database_cross_reference: EcoLexicon:dust
database_cross_reference: SWEETRealm:Dust
database_cross_reference: https://en.wikipedia.org/wiki/Dust
in_subset: envoPolar
comment: Dust occurs in and may be deposited from the atmosphere.

fresh water
type: Class
subclass of: liquid water
definition: Water which has a low concentration of dissolved solutes, particularly that of sodium chloride.
imported from: envo.owl
database_cross_reference: EcoLexicon:fresh_water
database_cross_reference: LTER:216
database_cross_reference: SWEETRealm:FreshWater
database_cross_reference: https://en.wikipedia.org/wiki/Fresh_water
has exact synonym: freshwater
in_subset: envoEmpo
in_subset: envoPolar
comment: The lower bound of solute concentration required for water to be considered freshwater is variable, but is always less than that of seawater, and often cited as less than 1 gram of solutes per 1 litre of water.

sewage
type: Class
subclass of: waste water
definition: Wastewater that is contaminated with feces or urine,
imported from: envo.owl
database_cross_reference: SWEETRealm:Sewage
database_cross_reference: https://en.wikipedia.org/wiki/Sewage

aquatic biome
type: Class
subclass of: biome
subclass of: aquatic ecosystem
definition: A biome which is determined by a water body and which has ecological climax communities adapted to life in or on water.
imported from: envo.owl
database_cross_reference: LTER:41

deep marine sediment
type: Class
subclass of: marine sediment
definition: Sediment that accumulates in the flat or very gently sloping areas of the deep ocean basin floor. The three main types of deep marine sediment, also known as pelagic sediment, are siliceous oozes, calcareous oozes, and red clays.
imported from: envo.owl
database_cross_reference: EcoLexicon:marine_sediment
database_cross_reference: EcoLexicon:marine_sedimentation
database_cross_reference: SWEETRealm:MarineSediment
database_cross_reference: https://en.wikipedia.org/wiki/Marine_sediment
has exact synonym: deep marine sediments
in_subset: envoPolar

stream sediment
type: Class
subclass of: sediment
imported from: envo.owl
comment: Revise adjacent to. Consider sampled stream sediment. Dry stream sediment.

compost
type: Class
subclass of: manure
subclass of: GENEPIO_0002016
definition: Manure which has been derived from the aerobically decomposed remnants of organic materials.
imported from: envo.owl
database_cross_reference: https://en.wikipedia.org/wiki/Compost

hospital
type: Class
subclass of: healthcare facility
subclass of: outbreak human exposure event location
definition: A hospital is a building in which health care services are provided by specialized staff and equipment.
imported from: envo.owl
database_cross_reference: https://en.wikipedia.org/wiki/Hospital

contaminated water
type: Class
subclass of: liquid water
imported from: envo.owl
database_cross_reference: EcoLexicon:water_pollution
database_cross_reference: https://en.wikipedia.org/wiki/Contaminated_water
has exact synonym: polluted water

animal litter
type: Class
subclass of: environmental material
definition: Straw or other material strewn in an animal's enclosure (e.g. a stable) for it to sleep on and to absorb its faeces and urine.
imported from: envo.owl
has_narrow_synonym: straw bedding

shop
type: Class
subclass of: commercial building
definition: A building in which a business presents a selection of goods and offers to trade or sell them to customers for money or other goods.
imported from: envo.owl
database_cross_reference: https://en.wikipedia.org/wiki/Shopping
has exact synonym: retail shop
has exact synonym: retail store
has exact synonym: retailer

food shop
type: Class
subclass of: shop
subclass of: outbreak human exposure event location
definition: A shop in which a business offers food products for sale or trade.
imported from: envo.owl
comment: Whether food is the primary product offered by the business or simply one of the products it offers is not specified in this class.

loam
type: Class
subclass of: soil
definition: A soil which is composed of approximately equal proportions of sand and silt, with a smaller proportion of clay.
imported from: envo.owl
database_cross_reference: EcoLexicon:loam
database_cross_reference: SWEETRealm:Loam
comment: Some authorities consider loam to be any soil material that contains 7 to 27% clay, 28 to 50% silt, and less than 52% sand.

agricultural soil
type: Class
subclass of: soil
definition: Soil which is part of an ecosystem used for agricultural activities.
imported from: envo.owl

garden soil
type: Class
subclass of: soil
definition: A portion of soil which is found in a garden.
imported from: envo.owl

waste material
type: Class
subclass of: environmental material
definition: A material which is not the desired output of a process and which is typically the input of a process which removes it from its producer (e.g. a disposal process).
imported from: envo.owl
database_cross_reference: EcoLexicon:waste
database_cross_reference: SWEETRealm:Waste
database_cross_reference: https://en.wikipedia.org/wiki/Waste

waste treatment plant
type: Class
subclass of: industrial building
imported from: envo.owl
has exact synonym: WWTP

animal manure
type: Class
subclass of: manure
definition: Manure which is derived from the waste products of animals.
imported from: envo.owl
comment: This is interesting in that the "role" aspect of "waste" is (or can be) replaced by another role "fertilizer". Thus, the positioning of "manure" under waste may not be totally correct.

fresh animal manure
type: Class
subclass of: animal manure
imported from: envo.owl

animal house
type: Class
subclass of: house
definition: A house used for sheltering non-human animals.
imported from: envo.owl
comment: While humans are animals, this class does not refer to human houses.

piggery
type: Class
subclass of: animal house
definition: An animal house which is used to house pigs.
imported from: envo.owl
database_cross_reference: https://en.wikipedia.org/wiki/Piggery

sewage plant
type: Class
subclass of: waste treatment plant
definition: A waste treatment plant which equipped to treat sewage such that its potential for environmental contamination is reduced.
imported from: envo.owl
has exact synonym: sewage treatment plant

drinking water
type: Class
subclass of: fresh water
definition: Drinking water is water which may be consumed by humans with no adverse effects on their health.
imported from: envo.owl
database_cross_reference: EcoLexicon:drinking_water
database_cross_reference: SWEETRealm:DrinkingWater
database_cross_reference: https://en.wikipedia.org/wiki/Drinking_water
has exact synonym: potable water

manufactured product
type: Class
subclass of: material entity
definition: A material entity that has been processed by humans or their technology in any way, including intermediate products as well as final products.
imported from: envo.owl
has exact synonym: manufactured good

tap water
type: Class
subclass of: fresh water
subclass of: treated water - ambient temperature
imported from: envo.owl
database_cross_reference: https://en.wikipedia.org/wiki/Tap_water

horse manure
type: Class
subclass of: animal manure
imported from: envo.owl
database_cross_reference: https://en.wikipedia.org/wiki/Horse_manure

pig manure
type: Class
subclass of: animal manure
definition: Manure which is primarily composed of pig feces.
imported from: envo.owl

industrial building
type: Class
subclass of: building
definition: An industrial building is a building within which goods are produced and, optionally, stored or within which services are rendered.
imported from: envo.owl
comment: It's possible that this will become an inferred class in the future. The United Nations' International Standard Industrial Classification should be referred to when expanding this branch. ISIC can also be used to identify processes. See http://unstats.un.org/unsd/cr/registry/regcst.asp?Cl=27&Lg=1.

dairy
type: Class
subclass of: industrial building
definition: A dairy is a building in which animal milk is harvested and, optionally, processed for human consumption.
imported from: envo.owl
database_cross_reference: https://en.wikipedia.org/wiki/Dairy
comment: 'Terminology differs between countries. For example, in the United States, the entire dairy farm is commonly called a "dairy." The building or farm area where milk is harvested from the cow is often called a "milking parlor" or "parlor." The farm area where milk is stored in bulk tanks is known as the farm's "milk house." Milk is then hauled (usually by truck) to a "dairy plant," also referred to as a "dairy", where raw milk is further processed and prepared for commercial sale of dairy products. In New Zealand, farm areas for milk harvesting are also called "milking parlours", and are historically known as "milking sheds."' https://en.wikipedia.org/wiki/Dairy

food processing building
type: Class
subclass of: industrial building
definition: A food processing building is a building in which materials that contain or consist of essential body nutrients - such as carbohydrates, fats, proteins, vitamins, or minerals - and may be ingested and assimilated by an organism to produce energy, stimulate growth, and maintain life are converted alternative forms.
imported from: envo.owl
comment: The semantics of food are being handled by FOODON http://purl.obolibrary.org/obo/foodon.owl

bakery
type: Class
subclass of: industrial building
subclass of: outbreak human exposure event location
definition: A bakery is a building in which raw flour-based food is baked in an oven to produce food products such as bread, cakes, pastries, and pies. These products are often sold from the bakery itself.
imported from: envo.owl
database_cross_reference: https://en.wikipedia.org/wiki/Bakery
comment: A bakery is a food processing building and a 'food shop' at the same time. This needs to be resolved.

farmyard manure
type: Class
subclass of: animal manure
imported from: envo.owl

brewery
type: Class
subclass of: industrial building
definition: A brewery is a building in which alcoholic beverages are produced by brewing, that is, steeping a starch source (commonly cereal grains) in water and fermenting the resulting sweet liquid with yeast. At times, the products are also sold from the brewery.
imported from: envo.owl

paper product
type: Class
subclass of: manufactured product
definition: A product which is composed primarily of paper.
imported from: envo.owl

currency note
type: Class
subclass of: paper product
definition: A paper product which is used as legal tender in economic or other monetary trasactions.
imported from: envo.owl
has exact synonym: bank note

stable manure
type: Class
subclass of: animal manure
imported from: envo.owl

air filter
type: Class
subclass of: manufactured product
definition: An air filter is a device that removes some substance from air.
imported from: envo.owl
database_cross_reference: https://en.wikipedia.org/wiki/Air_filter
comment: This is a general definition derived from the definitions for particulate, chemical, and other air filters. Subclasses should be created if needed.

sawmill
type: Class
subclass of: industrial building
definition: A building within which logs are cut into lumber products.
imported from: envo.owl

compost soil
type: Class
subclass of: soil
definition: Soil which is derived from compost.
imported from: envo.owl

farm soil
type: Class
subclass of: soil
definition: A portion of soil which is part of a cropland or a rangeland biome.
imported from: envo.owl

environmental material
type: Class
subclass of: specimen source substance
definition: A material entity which other material entities in an environmental system are primarily or partially composed of.
imported from: envo.owl
has exact synonym: portion of environmental material
comment: Everything under this parent must be a mass noun (i.e. not countable). All subclasses are to be understood as being composed primarily of the named entity, rather than restricted to that entity. For example, "ENVO:water" is to be understood as "environmental material composed primarly of some CHEBI:water".
comment: Instances of this class are portions of environmental materials, such as seawater in bucket, a water parcel in the photic zone of a lake, or the concrete that composes a building part. Instances of these portions may have fiat or non-fiat boundaries. For example, a water parcel has not physical boundaries, while the seawater in a bucket is bounded by the internal surfaces of the bucket.

surface layer
type: Class
subclass of: interface layer
definition: A layer of some material entity which is adjacent to one or more of its external boundaries and directly interacts with its immediate surroundings.
imported from: envo.owl
database_cross_reference: EcoLexicon:surface
database_cross_reference: http://sweetontology.net/reprSpaceGeometry/Surface
database_cross_reference: https://en.wikipedia.org/wiki/Surface
comment: This class is distinct from a geometric surface, which is two-dimensional. The idea of "uppermost" may be problematic. Further, the definition of layer (the superclass of surface in rev 133) references surface. This may be another issue. Perhaps this can be made into an inferred class using 'bounding layer of' some material entity, note that 'bounding layer' implies containment, which may not be valid here.

zoological garden
type: Class
subclass of: garden
definition: A facility in which animals are confined within enclosures and displayed to the public, and in which they may also be bred.
imported from: envo.owl
has exact synonym: zoo
has exact synonym: zoological park

anthropogenic environmental material
type: Class
subclass of: environmental material
definition: Anthropogenic material in or on which organisms may live.
imported from: envo.owl

mud
type: Class
subclass of: environmental material
definition: An environmental material which is a liquid or semi-liquid mixture of water and some combination of soil, silt, and clay particles.
imported from: envo.owl
database_cross_reference: EcoLexicon:mud
database_cross_reference: LTER:356
database_cross_reference: SWEETRealm:Mud
database_cross_reference: https://en.wikipedia.org/wiki/Mud

water well
type: Class
subclass of: well
definition: A well which provides access to groundwater held in an aquifer.
imported from: envo.owl
database_cross_reference: https://en.wikipedia.org/wiki/Water_well

sand
type: Class
subclass of: particulate environmental material
definition: Particulate environmental material which is composed primarily of particles of sand with only minor proportions of other substances.
imported from: envo.owl
database_cross_reference: EcoLexicon:sand
database_cross_reference: LTER:484
database_cross_reference: SWEETRealm:Sand
database_cross_reference: https://en.wikipedia.org/wiki/Sand
comment: This definition is intentionally ambiguous to support the multiple thresholds set by different authorities. Some authorities consider as sands soil material that contains 85% or more sand; the percentage of silt plus 1.5 times the percentage of clay does not exceed 15. coarse sand (sable grossier) 25% or more very coarse and coarse sand, and less than 50% any other one grade of sand.

gravel
type: Class
subclass of: solid environmental material
definition: An environmental material which is composed primarily of pieces of gravel.
imported from: envo.owl
database_cross_reference: EcoLexicon:gravel
database_cross_reference: SWEETRealm:Gravel
comment: As with all size-based classifications, there is considerable variation in what is considered gravel.

ocean biome
type: Class
subclass of: marine biome
definition: A marine biome which is determined by an ocean.
imported from: envo.owl
in_subset: envoPolar
comment: Ocean biomes are determined by major bodies of saline water, principal components of the hydrosphere. Approximately 71% of the Earth's surface is covered by ocean, a continuous body of water that is customarily divided into several principal oceans and smaller seas. More than half of this area is over 3,000 metres (9,800 ft) deep. Average oceanic salinity is around 35 parts per thousand (ppt) (3.5%), and nearly all seawater has a salinity in the range of 30 to 38 ppt.

particulate environmental material
type: Class
subclass of: environmental material
definition: An environmental material which is composed primarily of particles.
imported from: envo.owl
has_broad_synonym: particulate matter
in_subset: envoAtmo
in_subset: envoPolar

organic material
type: Class
subclass of: environmental material
definition: Environmental material derived from living organisms and composed primarily of one or more biomacromolecules.
imported from: envo.owl
database_cross_reference: EcoLexicon:organic_material
has exact synonym: biomass

forest biome
type: Class
subclass of: terrestrial biome
subclass of: forest ecosystem
definition: A forest ecosystem which is undergoing climactic ecological succession.
imported from: envo.owl
database_cross_reference: LTER:212
database_cross_reference: SPIRE:Forest

woodland biome
type: Class
subclass of: terrestrial biome
definition: A woodland biome is a terrestrial biome which includes, across its entire spatial extent, woody plants spaced sufficiently far apart to allow light penetration to support communities of herbaceous plants or shrubs living closer to the woodland floor.
imported from: envo.owl
comment: Preliminary definition.

shrubland biome
type: Class
subclass of: terrestrial biome
definition: A shrubland biome is a terrestrial biome which includes, across its entire spatial extent, dense groups of shrubs.
imported from: envo.owl
comment: Preliminary definition.

grassland biome
type: Class
subclass of: terrestrial biome
subclass of: grassland ecosystem
definition: A grassland ecosystem in which dominant ecological communities have reached their climax successional state.
imported from: envo.owl
database_cross_reference: SPIRE:Savannah_or_grassland

desert biome
type: Class
subclass of: biome
subclass of: desert ecosystem
definition: A desert ecosystem which is undergoing climactic ecological succession.
imported from: envo.owl
database_cross_reference: SPIRE:Desert_or_dune
in_subset: wwfBiome

tundra biome
type: Class
subclass of: terrestrial biome
subclass of: tundra ecosystem
definition: A tundra ecosystem which is undergoing climactic ecological succession.
imported from: envo.owl
database_cross_reference: SPIRE:Tundra
in_subset: envoPolar
in_subset: wwfBiome

mangrove biome
type: Class
subclass of: terrestrial biome
definition: A mangrove biome is a terrestrial biome which includes, across its spatial extent, mangrove plants (Rhizophoraceae). Mangrove plants are able to withstand high levels of salinity as well as regions of anoxia and frequent tidal inundation. Mangrove biomes often occur near tropical and sub-tropical estuaries and depositional marine coastal environments where fine sediments (often with high organic content) collect in areas protected from high energy wave action.
imported from: envo.owl
database_cross_reference: LTER:322
in_subset: wwfBiome
comment: Preliminary definition. Depending on whether mangrove trees or shrubs are present, this class could be a child of shrubland biome or woodland biome. Consider creating the appropriate classes.

anthropogenic terrestrial biome
type: Class
subclass of: terrestrial biome
subclass of: anthropised ecosystem
definition: An anthropogenic terrestrial biome is a terrestrial biome which has community structures determined by human activity.
imported from: envo.owl
has exact synonym: anthrome
has exact synonym: human biome
comment: Preliminary definition.

cropland biome
type: Class
subclass of: anthropogenic terrestrial biome
subclass of: cropland ecosystem
definition: A cropland ecosystem which is undergoing climactic ecological succession.
imported from: envo.owl

village biome
type: Class
subclass of: biome
subclass of: village
definition: A village biome is an anthropogenic terrestrial biome which contains settlements such as villages, towns, and/or small cities and which is primarily used for agricultural activity.
imported from: envo.owl
comment: Villages are also described as agricultural settlements with greater than 100 persons per square kilometre; however, no upper limit is defined.

rangeland biome
type: Class
subclass of: anthropogenic terrestrial biome
definition: A rangeland biome is an anthropogenic terrestrial biome which is primarily used for the rearing and grazing of livestock.
imported from: envo.owl

dense settlement biome
type: Class
subclass of: biome
subclass of: dense settlement
definition: A dense settlement biome is an anthropogenic terrestrial biome which is primarily used for human habitation, recreation, and industry within built structures with little other land use.
imported from: envo.owl

freshwater lake biome
type: Class
subclass of: freshwater biome
definition: A biome which is determined by a freshwater lake.
imported from: envo.owl

freshwater river biome
type: Class
subclass of: freshwater biome
definition: A freshwater biome which is determined by a freshwater river.
imported from: envo.owl

environmental system
type: Class
subclass of: RO_0002577
definition: A system which has the disposition to environ one or more material entities.
imported from: envo.owl
imported from: rbo.owl
database_cross_reference: EcoLexicon:environment
has exact synonym: environment
comment: In ENVO's alignment with the Basic Formal Ontology, this class is being considered as a subclass of a proposed BFO class "system". The relation "environed_by" is also under development. Roughly, a system which includes a material entity (at least partially) within its site and causally influences that entity may be considered to environ it. Following the completion of this alignment, this class' definition and the definitions of its subclasses will be revised.

layer
type: Class
subclass of: material entity
definition: A material entity which 1) is spatially continuous, 2) is composed of material of comparable thickness, composition, and physical properties, and 3) is physically distinct from adjacent portions of environmental material.
imported from: envo.owl
in_subset: envoPolar

anthropogenic environment
type: Class
subclass of: environmental system
definition: An anthropogenic environment is an environmental system which is the product of human activity.
imported from: envo.owl
comment: Unsatisfactory definition here. Must consider the threshold that makes an environmental system anthropogenic.

marine environment
type: Class
subclass of: environmental system
subclass of: astronomical body part
definition: A marine environment and enviroment which is determined by a marine water body.
imported from: envo.owl
in_subset: envoPolar

planetary surface
type: Class
subclass of: surface of an astronomical body
definition: A planetary surface is a surface layer where the solid or liquid material of a planet comes into contact with an atmosphere or outer space.
imported from: envo.owl
comment: a useful class: this can be used to define sub-terrestrial and sub-marine entities

maize field
type: Class
subclass of: agricultural field
definition: A field used for the cultivation of corn or related crop plants.
imported from: envo.owl
comment: Requested in Issue 112 as part of the curation of metagenome submissions in the European Nucleotide Archive.

field
type: Class
subclass of: astronomical body part
definition: An unbroken expanse (as of ice)
imported from: envo.owl
in_subset: envoPolar
comment: This class was created to accommodate "fields" from agricultural fields to marine mesoscale eddy fields. Thus, it has a very broad definition which makes it less than informative when annotating. Please consider using or requesting an appropriate subclass.

environmental zone
type: Class
subclass of: fiat object
definition: A site which has its extent determined by the presence or influence of one or more components of an environmental system or the processes occurring therein.
imported from: envo.owl
in_subset: envoPolar
comment: Formerly, this class was an experimental class and a subclass of "environmental feature". It is now aligned to BFO. The class was not obsoleted as the core semantics maintained their stability through its transition.

house
type: Class
subclass of: building
definition: A house is a building that provides a dwelling-place for a living entity.
imported from: envo.owl
comment: The provisioning of a dwelling-place can perhaps be modelled as a role.

human house
type: Class
subclass of: house
subclass of: domestic building
imported from: envo.owl
comment: A human house is a house which provides a dwelling-place for humans.

building part
type: Class
subclass of: human construction
definition: A building part is a construction which is part of a building.
imported from: envo.owl
comment: Not recommended for annotation. This class is likely to be made into an inferred class as its subclasses are distributed among more meaningful superclasses (i.e. ceiling is_a surface layer). See for example, "building floor". The boundaries between building parts may be bona fide or fiat.

bathroom
type: Class
subclass of: room
definition: A bathroom is a room which contains a washbasin or other fixture, such as a shower or bath, used for bathing by humans.
imported from: envo.owl
has exact synonym: bathing room

room
type: Class
subclass of: building part
definition: A building part which is separated from other building parts by one or more interior walls and, optionally, outdoor areas by one or more exterior walls.
imported from: envo.owl

constructed barrier
type: Class
subclass of: human construction
definition: A constructed barrier is a freestanding wall, berm, or fence built to limit movement of entities across a boundary.
imported from: envo.owl
has_broad_synonym: barrier

glass
type: Class
subclass of: solid environmental material
definition: Glass is an amorphous (non-crystalline) solid which is often transparent.
imported from: envo.owl
comment: This class refers to all forms of glass. For the familiar form present in window panes and drinking glasses, consider silica-based glass.

silica-based glass
type: Class
subclass of: glass
definition: Silica-based glass is a glass composed primarily of silicon dioxide, the primary constituent of sand.
imported from: envo.owl
has_broad_synonym: glass
comment: Silica-based glasses are the most common manufactured variety of glass.

building floor
type: Class
subclass of: human construction
subclass of: solid astronomical body part
subclass of: solid surface layer
subclass of: surface of an astronomical body
definition: A building floor is a surface layer which is part of a building and used for walking.
imported from: envo.owl
comment: To be more precise, a subfloor and a floor covering may be specified. Please request these classes and propose definitions if they are needed.

pole
type: Class
subclass of: object
definition: A solid, cylindrical object or column with its length greater than its diameter.
imported from: envo.owl
comment: This was created in response to a user request, but it is an odd class in that it specifies a shape rather than a particular material entity. It may, therefore, be deprecated when more meaningful or sensible alternatives become apparent.

factory
type: Class
subclass of: industrial building
definition: A factory (previously manufactory) or manufacturing plant is an industrial site, usually consisting of buildings and machinery, or more commonly a complex having several buildings, where workers manufacture goods or operate machines processing one product into another.
imported from: envo.owl
has exact synonym: manufactory
has exact synonym: manufacturing plant

table
type: Class
subclass of: piece of furniture
definition: A table is a form of furniture with a flat horizontal upper surface used to support objects, for storage, show, and/or manipulation.
imported from: envo.owl

desk
type: Class
subclass of: table
definition: A desk is a table which is intended for information-manipulation tasks, including writing and use of interactive electronics.
imported from: envo.owl
comment: The intentional nature of this definition is problematic, but the restricted range of activities visited upon a desk is of interest.

piece of furniture
type: Class
subclass of: manufactured product
definition: A piece of furniture is a movable object intended to support various human activities such as seating (e.g., chairs, stools and sofas) and sleeping (e.g., beds).
imported from: envo.owl
comment: The assumption is that furniture is manufactured, which is arguable. Further, according to Black's Law Dictionary (http://thelawdictionary.org/furniture/) many classes can be subclasses of 'piece of furntiure': "This term includes that which furnishes, or with which anything is furnished or supplied; whatever must be supplied to a house, a room, or the like, to make it habitable, convenient, or agreeable; goods, vessels, utensils, and other appendages necessary or convenient for housekeeping; whatever is added to the interior of a house or apartment, for use or convenience. Bell v. Holding, 27 Ind. 173.The term “furniture” embraces everything about the house that has been usually enjoyed there, including plate, linen, china, and pictures. 1 Endicott v. Endicott, 41N. J. Eq. 96, 3 Atl. 157.The word “furniture” made use of in the disposition of the law. or in the conventions or acts of persons, comprehends only such furniture as is intended for use and ornament of apartments, but not libraries which happen to be there, nor plate. Civ.Code La. art. 477." However, this would eventually be absurd and limit other groupings. Perhaps some sort of 'furnishing' BFO:function would be a better way to handle this.

motor vehicle
type: Class
subclass of: vehicle
definition: A motor vehicle is a vehicle which is propelled by an engine or motor and that does not operate on rails.
imported from: envo.owl
comment: Subclasses will be added by inference.

truck
type: Class
subclass of: motor vehicle
definition: A truck is a motor vehicle which, as its primary funcion, transports cargo rather than human passangers.
imported from: envo.owl
has exact synonym: lorry

vehicle
type: Class
subclass of: manufactured product
definition: A vehicle is a mobile machine which transports people or cargo.
imported from: envo.owl

lentic water body
type: Class
subclass of: water body
definition: A lentic water body is a water body in which the accumulated water, in its totality, has very little to no directed flow.
imported from: envo.owl

lotic water body
type: Class
subclass of: water body
definition: A lotic water body is a water body in which the accumulated water, in its totality, is flowing.
imported from: envo.owl

manufactured cage
type: Class
subclass of: manufactured product
definition: A manufactured structure made of interspaced structural elements such as metal or wooden bars or wires held together such that they may be used to confine, contain, or protect something.
imported from: envo.owl
has_broad_synonym: cage

drylot
type: Class
subclass of: feedlot
definition: A drylot is an enclosure of limited size usually bare of vegetation and used for fattening livestock.
imported from: envo.owl

feedlot
type: Class
subclass of: agricultural ecosystem
definition: A feedlot is a plot of land on which livestock are fattened for market
imported from: envo.owl

planetary landmass
type: Class
subclass of: planetary surface
subclass of: landmass
definition: A landmass which is part of a planet.
imported from: envo.owl
has_broad_synonym: land

dense settlement
type: Class
subclass of: human settlement
definition: A settlement with a high density of buildings and inhabitants.
imported from: envo.owl
comment: The thresholds for what makes a settlment "dense" can be determined as needed. If there is a specific threshold that should be added to ENVO, please make a new class request.

water mass
type: Class
subclass of: body of liquid
definition: A mass of water.
imported from: envo.owl

hydrological precipitation process
type: Class
subclass of: precipitation process
definition: Hydrological precipitation is a process during which any product of the condensation of atmospheric water vapour is pulled to the planetary surface by gravity.
imported from: envo.owl
has_broad_synonym: precipitation
comment: "process" is included in the label to make it clear that we are not referring to the precipitated material (e.g. snow, rain, sleet)

area of barren land
type: Class
subclass of: terrestrial environmental zone
definition: An area of a planet's surface which is primarily composed of bedrock, desert pavement, scarp rock, talus, material exposed by slides, volcanic material, glacial debris, sand, material exposed during strip mining, gravel, and other accumulations of earthen material in contact with an atmospheric column extending from the planetary boundary layer to the planet's exosphere with little to no physical obstruction.
alternative term: Barren Land (Rock/Sand/Clay)
imported from: envo.owl
database_cross_reference: NLCD:31
in_subset: envoPolar
in_subset: nlcd2011
comment: According to the NLCD 2011, areas of barren land generally have less than 15% cover of vegetation. A specific threshold is not asserted in this definition.

obsolete air temperature
type: Class
definition: A temperature that inheres in some portion of air.
imported from: envo.owl
deprecated: true

village
type: Class
subclass of: human settlement
definition: A village is a clustered human settlement or community, larger than a hamlet but smaller than a town, with a population ranging from a few hundred to a few thousand. Though often located in rural areas, the term urban village is also applied to certain urban neighbourhoods. Villages are normally permanent, with fixed dwellings; however, transient villages can occur. Further, the dwellings of a village are fairly close to one another, not scattered broadly over the landscape, as a dispersed settlement.
imported from: envo.owl

gaseous environmental material
type: Class
subclass of: fluid environmental material
definition: A material entity which is composed of one or more chemical entities and has neither independent shape nor volume but tends to expand indefinitely.
imported from: envo.owl
has_narrow_synonym: gas

astronomical body part
type: Class
subclass of: material entity
definition: A material part of an astronomical body.
imported from: envo.owl
in_subset: envoAstro
in_subset: envoPolar
comment: Material parts of astronomical bodies generally have boundaries formed by discontinuities in qualities, composition, or other physical characterisitcs. These boundaries are sometimes sharp, and sometimes diffuse, with different classification systems and communities declaring varying thresholds (e.g. for where a shoreline, forest, or other entity begins and ends). However, some boundaries are declared by fiat - that is, by arbitrary human convention or decree - particularly by regulatory or other authorities and communities of practice. The classes in this hierarchy attempt to offer generalisable definitions that allow multiple classfiication systems to map to and interoperate through. If desired, we can create classes that declare thresholds used by a given authority or community under the more generic ones, annotated with source information.

solid environmental material
type: Class
subclass of: environmental material
definition: An environmental material which is in a solid state.
imported from: envo.owl
comment: This is a defined class: its subclasses will not be asserted, but filled by inference.

liquid environmental material
type: Class
subclass of: fluid environmental material
definition: An environmental material which is in a liquid state.
imported from: envo.owl
in_subset: envoPolar
comment: This is a defined class: most of its subclasses will not be asserted, but filled by inference.

precipitation process
type: Class
subclass of: material transport process
definition: A precipitation process is a process in which a portion of some substance segregates from a material in which that substance or its precursors were dissolved or suspended in and settles due to a force such as gravity or centrifugal force.
imported from: envo.owl

open animal house
type: Class
subclass of: animal house
definition: An animal house which is only partially surrounded by a building envelope.
imported from: envo.owl

closed animal house
type: Class
subclass of: animal house
definition: An animal house which has a complete building envelope.
imported from: envo.owl

animal cage
type: Class
subclass of: manufactured cage
definition: A manufactured cage which may be used to confine, contain, or protect an animal.
imported from: envo.owl
has_broad_synonym: cage
has_narrow_synonym: chicken cage

petting zoo
type: Class
subclass of: zoological garden
subclass of: outbreak animal exposure event location
subclass of: outbreak human exposure event location
definition: A petting zoo is a zoological garden which contains domesticated non-human animals and some wild non-human animals that are docile enough for humans to touch and feed.
imported from: envo.owl
has exact synonym: petting farm
comment: Petting zoos are often nested within a zoological garden featuring wild non-human animals, not docile enough for humans to touch.

plumbing drain
type: Class
subclass of: artificial channel
definition: An artificial channel which transports unwanted water or waste liquids away from their source, either to a more useful area, a receptacle, or into sewers or stormwater mains as waste discharge to be released or processed.
imported from: envo.owl
has exact synonym: drain
has exact synonym: drainage channel

abattoir
type: Class
subclass of: industrial building
definition: A facility in which non-human animals are slaughtered and processed for human consumption.
imported from: envo.owl
has exact synonym: slaughter plant
has exact synonym: slaughterhouse

day care building
type: Class
subclass of: commercial building
definition: A building which is used to care for a human child during the working day by a person, outside the child's immediate family, other than that child's legal guardians.
imported from: envo.owl
has exact synonym: child care building
has exact synonym: daycare building
comment: This is a kind of day care facility. A facility need not be a building.

fish processing building
type: Class
subclass of: food processing building
definition: A building in which fish are subject to a series of operations to prepare them for human consumption.
imported from: envo.owl
comment: This is a kind of fish processing facility. Facilities need not be buildings, factory ships may be considered fish processing facilities.

nursing home
type: Class
subclass of: healthcare facility
subclass of: outbreak human exposure event location
definition: A building in which nursing aides and skilled nurses provide care and treatment to residents who have significant difficulty coping with the required activities of daily living.
imported from: envo.owl
has_broad_synonym: intermediate care facility
has_broad_synonym: long-term care facility
has_broad_synonym: old people's home
has_broad_synonym: skilled nursing facility
has exact synonym: care home
has exact synonym: convalescent home
has exact synonym: rest home

residential building
type: Class
subclass of: human house
definition: A human house which serves as a long-term shelter for its inhabitants and within which they store personal property.
imported from: envo.owl
comment: This term is not to be used for hotels, hostels, inns and the like, which provides shorter-term stays.

restaurant
type: Class
subclass of: commercial building
subclass of: outbreak human exposure event location
definition: A building within which food and drink are prepared and served to customers in exchange for money or other goods and/or services.
imported from: envo.owl
has exact synonym: eatery

campground
type: Class
subclass of: anthropogenic geographic feature
definition: A part of an ecosystem which may be or has been used for one or more overnight stays by humans sheltering in tents, camper vans, caravans, or improvised shelters.
imported from: envo.owl
has exact synonym: camping ground
has exact synonym: camping pitch
has exact synonym: camping site
has exact synonym: campsite

dedicated campground
type: Class
subclass of: campground
definition: A campground which has been modified by humans to provide and maintain facilities for camping such as fire pits, road access, latrines, and garbage bins.
imported from: envo.owl

impromptu campground
type: Class
subclass of: campground
definition: A campground which has no pre-existing facilities installed or maintained by humans, usually found outside of anthropised ecosystems.
imported from: envo.owl

hot tub
type: Class
subclass of: manufactured product
definition: A manufactured product which may hold a volume of heated water suitable for one or more humans to bathe in, usually for the purposes of hydrotherapy or pleasure.
imported from: envo.owl
has_broad_synonym: spa
has_narrow_synonym: Jacuzzi

industrial wastewater
type: Class
subclass of: waste water
definition: Wastewater which is produced by industrial activity and which contains chemical contaminants other than those associated with urine and fecal matter.
imported from: envo.owl

constructed swimming pool
type: Class
subclass of: human construction
definition: A construction which is designed to hold water in which humans may swim or perform other leisure activities.
imported from: envo.owl
has_broad_synonym: pool
has exact synonym: paddling pool
has exact synonym: swimming bath
has exact synonym: swimming pool
has exact synonym: wading pool

water intake
type: Class
subclass of: human construction
definition: A hydraulic-engineering installation which transports water - in specified amounts, of a specified quality, and in accordance with a water-consumption plan - from a source of supply into a conduit.
imported from: envo.owl
comment: Sources of water include rivers, lakes, reservoirs, and other water bodies. Conduits include canals, pipelines, and tunnels. Water intakes typically transport water for purposes of hydroelectric power engineering, water supply, or irrigation.

cafeteria
type: Class
subclass of: restaurant
definition: A building which provides the site for food services with little or no waiting staff furnishing table service.
imported from: envo.owl

delicatessen
type: Class
subclass of: grocery store
definition: A food shop which sells a selection of food products that are not typical dietary components of the human population it is co-located with.
imported from: envo.owl
has exact synonym: deli
comment: The food products sold in a delicatessen are often considered unusual by the majority of its customers and may come from foreign food supplies which are not widely imported into its region of operation.

food truck
type: Class
subclass of: truck
definition: A truck which is equipped to cook and sell food.
imported from: envo.owl
comment: Due to the facilities on board, food trucks are often larger than other trucks with comparable mechanics.

take-out restaurant
type: Class
subclass of: restaurant
definition: A restaurant which provides prepared meals or other food products that the purchaser must eat off its premises.
imported from: envo.owl
has exact synonym: take out restaurant
has exact synonym: take-away

kiosk
type: Class
subclass of: commercial building
definition: A booth with an open window on one side.
imported from: envo.owl
comment: This definition of kiosk is characteristic of the Western hemisphere and used in English-speaking countries.

food kiosk
type: Class
subclass of: kiosk
subclass of: outbreak human exposure event location
definition: A kiosk from which food products are sold.
imported from: envo.owl
comment: This definition of kiosk is characteristic of the Western hemisphere and used in English-speaking countries.

grocery store
type: Class
subclass of: food shop
definition: A food shop in which food products are the primary offer for sale or trade.
imported from: envo.owl

fairground
type: Class
subclass of: anthropogenic geographic feature
definition: A part of an ecosystem which has been allocated to host a gathering of people for multiple entertainment or commercial activities.
imported from: envo.owl
comment: Fairgrounds, or parts thereof, may be constructed (e.g. concreted over) or be natural (e.g. clearings or heaths), thus land use is the key differentia.

agricultural fairground
type: Class
subclass of: fairground
subclass of: outbreak animal exposure event location
definition: A fairground which is used to exhibit agricultural technology, livestock, and farm-related activity.
imported from: envo.owl

market
type: Class
subclass of: anthropogenic geographic feature
subclass of: outbreak human exposure event location
definition: A part of an ecosystem where people gather for the purchase and sale of provisions, livestock, and other goods.
imported from: envo.owl
has_broad_synonym: public market
has exact synonym: bazaar
has exact synonym: marketplace
has exact synonym: mercado
has exact synonym: palengke
has exact synonym: souk
has exact synonym: tianguis
comment: As with campgrounds and fairgrounds, land use is the key differentia here. The regularity of marketplace activities may provide a differentia for further growth of this branch.

ethnic food shop
type: Class
subclass of: food shop
definition: A food shop in which the food products on offer are restricted to those produced in a region and cultural setting other than that of the shop's locality.
imported from: envo.owl
has exact synonym: ethnic food store
has exact synonym: ethnic speciality shop
has exact synonym: ethnic speciality store

plumbing fixture
type: Class
subclass of: manufactured product
definition: An exchangeable device which can be connected to a plumbing system to deliver and drain water.
imported from: envo.owl

sink fixture
type: Class
subclass of: plumbing fixture
definition: A plumbing fixture which is bowl-shaped and used for washing hands, dishwashing, and other purposes.
imported from: envo.owl
has exact synonym: hand basin
has exact synonym: wash basin

bathtub fixture
type: Class
subclass of: plumbing fixture
definition: A plumbing fixture which may serve as a container for water in which humans or other animals may bathe.
imported from: envo.owl
has exact synonym: bathtub
comment: Of course, there are other uses for bathtubs.

shower fixture
type: Class
subclass of: plumbing fixture
definition: A plumbing fixture within which a human or other animal may bathe under a spray of water.
imported from: envo.owl
comment: Indoors, there is a drain in the floor. Most showers have temperature, spray pressure and adjustable showerhead nozzle. Showering is common in Western culture due to the efficiency of using it compared with a bathtub. Its use in hygiene is, therefore, common practice. A shower uses less water on average than a bath: 80 litres for a shower compared with 150 litres for a bath.

environmental system determined by a quality
type: Class
subclass of: environmental system
definition: An environmental system which is determined by materials bearing roughly homogeneous qualities.
imported from: envo.owl
comment: Organisational class. Not intended for annotation.

environmental system determined by an organism
type: Class
subclass of: environmental system
definition: An environmental system which is determined by a living organism.
imported from: envo.owl
in_subset: envoEmpo
in_subset: envoOmics

animal-associated environment
type: Class
subclass of: environmental system determined by an organism
definition: An environmental system determined by an animal.
alternative term: Animal
imported from: envo.owl
has_broad_synonym: animal environment
has exact synonym: Metazoan-associated environment
in_subset: envoEmpo
in_subset: envoMeo
in_subset: envoOmics

environment associated with an animal part or small animal
type: Class
subclass of: ecosystem
definition: An environmental system determined by part of a living or dead animal, or a whole small animal.
alternative term: Animal corpus
imported from: envo.owl
in_subset: envoEmpo
in_subset: envoMeo
in_subset: envoOmics

ecosystem
type: Class
subclass of: environmental system
definition: An environmental system which includes both living and non-living components.
imported from: envo.owl
database_cross_reference: LTER:173
comment: This class will be primarily filled by inference, any environmental system which necessarily includes living parts should be autoclassified here.

terrestrial environmental zone
type: Class
subclass of: environmental zone
subclass of: astronomical body part
definition: An environmental zone which is bounded by material parts of a land mass or the atmosphere or space adjacent to it.
imported from: envo.owl

grassland ecosystem
type: Class
subclass of: terrestrial ecosystem
definition: An ecosystem in which grasses (Graminae) are the dominant form of vegetation and determine the system's structure and dynamics.
imported from: envo.owl
database_cross_reference: EcoLexicon:grassland
database_cross_reference: FTT:259
database_cross_reference: FTT:760
database_cross_reference: FTT:766
database_cross_reference: Geonames:V.GRSLD
database_cross_reference: LTER:232
database_cross_reference: TGN:21604
database_cross_reference: TGN:54052
has exact synonym: GRASSLAND
has exact synonym: grassland

commercial building
type: Class
subclass of: building
definition: A building which is primarily used to facilitate the buying or selling of goods or services.
imported from: envo.owl
comment: "Commerce includes legal, economic, political, social, cultural and technological systems that are in operation in any country or internationally."

forest ecosystem
type: Class
subclass of: terrestrial ecosystem
definition: An ecosystem which is determined by communities of plants with a tree growth form and in which members of those communities form continuous or discontinuous regions of canopy cover.
imported from: envo.owl
comment: The definitions of forest can vary greatly, and different classes will be needed to support the major categories. Tree cover alone is not enough to distinguish between forests and plantations. The international definition proposed by the 2010 FAO Forestry Resource Assessment: "land spanning more than 0.5 ha with trees higher than 5 metres and canopy cover of more than 10 percent, or trees able to reach these thresholds in situ . It does not include land that is predominantly under agricultural or urban land use." - FAO. 2010. Global forest resources assessment 2010, Main report, FAO Forestry Paper 163. Rome.

cropland ecosystem
type: Class
subclass of: terrestrial ecosystem
subclass of: anthropised ecosystem
definition: An ecosystem which 1) is determined by communities of annual crops, perennial woody crops, or by actively tilled land, 2) is primarily used for agricultural activity, and 3) contains no village or larger human settlement.
imported from: envo.owl

solid layer
type: Class
subclass of: layer
definition: A layer which is primarily composed of some solid material, allowing for non-solid parts such as interstitial pockets of gas or liquid.
imported from: envo.owl

vegetated area
type: Class
subclass of: terrestrial environmental zone
definition: A vegetated area is a geographic feature which has ground cover dominated by plant communities.
imported from: envo.owl
in_subset: envoPolar

solid surface layer
type: Class
subclass of: surface layer
subclass of: solid layer
definition: A surface layer which is composed primarily of solid environmental material.
imported from: envo.owl

saline water body
type: Class
subclass of: water body
definition: A body of water which is primarily composed of saline water.
imported from: envo.owl
has exact synonym: saline body of water
comment: This class has its subclasses populated by inference.

tundra ecosystem
type: Class
subclass of: terrestrial ecosystem
definition: An ecosystem which 1) typically has monthly average temperatures below 10 degrees Celsius 2) has a low evapotranspiration ratio 3) is dominated by treeless terrain, covered by communities of low-growing vegetation such as dwarf shrubs, sedges and grasses, mosses, and lichens, 4) contains areas of soil underlain by permafrost with a thin active layer and 5) occurs in both polar and alpine regions (i.e., both high latitudes and high altitudes), and 5) does not have permanent snow or ice cover.
imported from: envo.owl
database_cross_reference: Tundra
database_cross_reference: SPIRE:Tundra
in_subset: envoPolar
comment: Tundra ecosysems are often underlaid by permafrost, with the result that drainage is bad and the soil may be saturated for long periods. It does not have a permanent snow-ice cover. Productivity is low in this biome because of the extremes of climate.

laboratory facility
type: Class
subclass of: research facility
definition: A research facility in which systems of manufactured products control internal conditions and in which scientific or technological research, experiments, and measurement may be performed.
imported from: envo.owl
has exact synonym: research laboratory

body of liquid
type: Class
subclass of: liquid astronomical body part
definition: A liquid astronomical body part which is continuous and is delimited by physical discontinuities or non-liquid boundaries.
imported from: envo.owl

liquid astronomical body part
type: Class
subclass of: fluid astronomical body part
subclass of: compound astronomical body part
definition: A part of an astronomical body which is primarily composed of liquid material.
imported from: envo.owl

fluid astronomical body part
type: Class
subclass of: astronomical body part
definition: A part of an astronomical body which is primarily composed of fluid.
imported from: envo.owl

domestic building
type: Class
subclass of: building
definition: A building which is primarily used for the long-term habitation of humans.
imported from: envo.owl

surface of an astronomical body
type: Class
subclass of: surface layer
subclass of: astronomical body part
definition: A surface layer where the solid or liquid material of an astronomical body comes into contact with an atmosphere or outer space.
imported from: envo.owl
comment: a useful class: this can be used to define sub-terrestrial and sub-marine entities

interface layer
type: Class
subclass of: layer
definition: A layer which separates two portions of environmental material which possess 1) differing compositions, 2) a discontinuity of some property, or 3) some derivative of some property in a direction normal to the interface.
imported from: envo.owl

desert ecosystem
type: Class
subclass of: astronomical body part
subclass of: ecosystem
definition: An ecosystem in which the composition, structure, and function of resident ecological assemblages are primarily determined by a desert.
imported from: envo.owl

landmass
type: Class
subclass of: land
definition: A large continuous area of land, either surrounded by sea or contiguous with another landmass.
imported from: envo.owl

compound astronomical body part
type: Class
subclass of: astronomical body part
definition: A part of an astronomical body which is composed of a continuous medium bearing liquid, gaseous, and solid material in variable quantities.
imported from: envo.owl

land
type: Class
subclass of: solid astronomical body part
subclass of: solid surface layer
subclass of: surface of an astronomical body
definition: A surface layer of an astronomical body which is primarily composed of solid material and is not covered by oceans or other bodies of water.
imported from: envo.owl

aquatic ecosystem
type: Class
subclass of: astronomical body part
subclass of: ecosystem
imported from: envo.owl

marine ecosystem
type: Class
subclass of: marine environment
subclass of: aquatic ecosystem
imported from: envo.owl

freshwater ecosystem
type: Class
subclass of: aquatic ecosystem
imported from: envo.owl

terrestrial ecosystem
type: Class
subclass of: astronomical body part
subclass of: environmental system determined by a quality
subclass of: ecosystem
definition: An ecosystem which primarily occurs on land.
imported from: envo.owl

construction
type: Class
subclass of: material entity
definition: A material entity which has been assembled through the intentional, instinctual, or deliberately programmed efforts of an organism or machine.
imported from: envo.owl

anthropised ecosystem
type: Class
subclass of: anthropogenic environment
subclass of: ecosystem
definition: An ecosystem which is formed as a result of human activity or impact.
imported from: envo.owl

human settlement
type: Class
subclass of: astronomical body part
subclass of: animal-associated environment
subclass of: environment associated with an animal part or small animal
subclass of: anthropised ecosystem
definition: An anthropised ecosystem which is determined by the presence of humans and their constructions.
imported from: envo.owl

hatchery
type: Class
subclass of: human construction
definition: A construction in which eggs are hatched under artificial conditions.
imported from: envo.owl

surface landform
type: Class
subclass of: landform
definition: A landform which occurs on the surface of an astronomical body.
imported from: envo.owl
comment: The usage of "surface" here aligns with that of planetary surface: in contact with the atmosphere or space. The extent of the "surface" can vary. For rocky planets like Earth, astrogeologists consider the crust as the surface.

landform
type: Class
subclass of: solid astronomical body part
definition: A solid astronomical body part which has been formed from and is composed primarily of the matter of that astronomical body.
imported from: envo.owl
comment: Landforms may be natural or anthropogenic. This term has often has loose usage when referencing entities which are either subterranean or submerged below water bodies. In some cases, oceans themselves are considered landforms. Here, we have provided subclasses to resolve this ambiguity, but place oceans and other water bodies elsewhere.In later revisions, this hiearchy is likely to be reordered based on the formation processes of the entities within it.

reef
type: Class
subclass of: hydrographic feature
imported from: envo.owl

textile
type: Class
subclass of: manufactured product
definition: A textile is a manufactured product comprised of a network of natural or artificial fibers (often referred to as thread or yarn).
imported from: envo.owl
database_cross_reference: https://en.wikipedia.org/wiki/Textile

bodily fluid material
type: Class
subclass of: organic material
definition: An organic material which is primarily composed of some natural bodily fluid or secretion such as blood, semen, saliva, blood plasma, intracellular and interstitial fluids.
imported from: envo.owl
database_cross_reference: https://en.wikipedia.org/wiki/Bodily_fluid
comment: ENVO bodily fluid classes differ from UBERON's treatment of bodily fluids. UBERON refers to the substance itself ("S"). We assert that UBERON's classes are the primary compositional component of the terms in ENVO ("S material"). Use of the ENVO terms is typically recommended when you wish to indicate that there may be other materials intermixed with S.

excreta material
type: Class
subclass of: waste material
subclass of: bodily fluid material
definition: A bodily fluid material which is composed primarily of excreta, bodily fluids consisting of matter which contains the waste products of biological processes, including urine or feces, discharged from an organism's body.
imported from: envo.owl
comment: ENVO bodily fluid classes differ from UBERON's treatment of bodily fluids. UBERON refers to the substance itself ("S"). We assert that UBERON's classes are the primary compositional component of the terms in ENVO ("S material"). Use of the ENVO terms is typically recommended when you wish to indicate that there may be other materials intermixed with S.

animal feed
type: Class
subclass of: food material
definition: Food material which can be used to meet nutritional requirements of animals, particularly livestock such as cattle, goats, sheep, horses, chickens and pigs.
imported from: envo.owl
database_cross_reference: https://en.wikipedia.org/wiki/Animal_feed
comment: Most animal feed is from plants but some is of animal origin. Fodder refers particularly to food given to the animals (including plants cut and carried to them), rather than that which they forage for themselves. It includes hay, straw, silage, compressed and pelleted feeds, oils and mixed rations, and also sprouted grains and legumes.

contaminated animal feed
type: Class
subclass of: animal feed
definition: Contaminated animal feed is an animal feed that has become contaminated with or come contact with microorganisms or toxic chemicals.
imported from: envo.owl

bone meal
type: Class
subclass of: plant feed
definition: A mixture of crushed and coarsely ground bones that is used as an organic fertilizer for plants and formerly in animal feed.
imported from: envo.owl
database_cross_reference: https://en.wikipedia.org/wiki/Bone_meal

plant feed
type: Class
subclass of: food material
definition: Food material which can be used to meet nutritional requirements of plants.
imported from: envo.owl

cloth
type: Class
subclass of: textile
definition: A textile comprised of a pliable material made usually by weaving, felting, or knitting natural or synthetic fibers and filaments.
imported from: envo.owl
database_cross_reference: https://en.wikipedia.org/wiki/Cloth

fluid environmental material
type: Class
subclass of: environmental material
definition: An environmental material which is unable to resist shear forces and continuously deforms when subject to them.
imported from: envo.owl
has_narrow_synonym: fluid

environmental system process
type: Class
subclass of: process
definition: A process in which includes the components of an environmental system as participants.
imported from: envo.owl
comment: This is a convenience class for organisation and should not be used for annotation.

material transport process
type: Class
subclass of: environmental system process
definition: A process during which material is displaced from its original location and transported either to a new location or back to the original location.
definition editor: https://orcid.org/0000-0002-4366-3088
definition editor: http://orcid.org/0000-0002-3410-4655
imported from: envo.owl
in_subset: envoPolar
comment: Experimental class for structural purposes not recommended for annotation.

marine sediment
type: Class
subclass of: sediment
definition: Sediment which has been transported through the marine water column, settling on the seafloor.
definition editor: https://orcid.org/0000-0002-4366-3088
definition editor: http://orcid.org/0000-0002-3410-4655
imported from: envo.owl
has exact synonym: marine sediments
in_subset: envoPolar
comment: Particles of marine sediment are primarily generated by 1) processes in terrestrial systems and transported to the marine realm by the action of rivers or aeolian processes (amongst other routes) , 2) marine organisms, 3) chemical processes in seawater, or 4) cosmogeneous input.

channel
type: Class
subclass of: landform
definition: A structure which traverses a mass of one or more environmental materials, and encloses a roughly tubular site.
definition editor: https://orcid.org/0000-0002-4366-3088
definition editor: http://orcid.org/0000-0002-3410-4655
imported from: envo.owl
in_subset: envoPolar

train
type: Class
subclass of: vehicle
definition: A vehicle which locomotes using rails and consists of a series of connected compartments used to transport passengers or cargo.
imported from: envo.owl

passenger train
type: Class
subclass of: train
definition: A train which is capable of and used for passenger transport.
imported from: envo.owl

subway train
type: Class
subclass of: astronomical body part
subclass of: passenger train
definition: A passenger train which runs along an undergroud rail system.
imported from: envo.owl
has exact synonym: subway
has exact synonym: tube train
has exact synonym: underground train
has_narrow_synonym: London Underground
has_narrow_synonym: SkyTrain
has_narrow_synonym: Tube
has_narrow_synonym: U-Bahn
has_narrow_synonym: Underground
has_narrow_synonym: metropolitana

building corridor
type: Class
subclass of: building part
definition: A building part which is a narrow hall or passage in a building with rooms leading off it.
imported from: envo.owl
has_broad_synonym: hall
has_broad_synonym: passage
has exact synonym: hallway

conference venue
type: Class
subclass of: building
definition: A building which accomodates conferences.
imported from: envo.owl
has exact synonym: conference center
has exact synonym: conference centre

educational facility
type: Class
subclass of: human construction
definition: A human construction in which people are educated.
imported from: envo.owl

school building
type: Class
subclass of: educational facility
definition: An institutional building in which students are educated.
imported from: envo.owl
has_broad_synonym: school

homeless shelter
type: Class
subclass of: institutional building
definition: An institutional building which temporarily houses homeless people.
imported from: envo.owl

healthcare facility
type: Class
subclass of: human construction
definition: A human construction in which healthcare is provided.
imported from: envo.owl
has exact synonym: health facility
has exact synonym: medical facility

acute care facility
type: Class
subclass of: healthcare facility
definition: A healthcare facility which is used for short-term patient care.
imported from: envo.owl
has exact synonym: ACC
has exact synonym: ACF
has exact synonym: acute care center

clinical patient assessment facility
type: Class
subclass of: healthcare facility
definition: A healthcare facility in which patients are medically assessed.
imported from: envo.owl
has_broad_synonym: CAC
has_broad_synonym: clinical assessment centre
has exact synonym: clinical patient assessment center
has exact synonym: clinical patient assessment centre

hospital unit facility
type: Class
subclass of: healthcare facility
definition: A healthcare facility which 1) is located in part of a hospital and 2) is used by an organizational unit within a hospital.
imported from: envo.owl
has exact synonym: hospital ward

emergency unit room
type: Class
subclass of: room
definition: A room in which emergency medical care is provided.
imported from: envo.owl
has exact synonym: A&E room
has exact synonym: ER room
has exact synonym: EW room
has exact synonym: accident & emergency department room
has exact synonym: casualty department room
has exact synonym: emergency department room
has exact synonym: emergency room room
has exact synonym: emergency ward room

intensive care unit facility
type: Class
subclass of: hospital unit facility
definition: A hospital unit facility which is used to provide intensive medical care.
imported from: envo.owl
has exact synonym: ICU
has exact synonym: ICW
has exact synonym: ITU
has exact synonym: critical care unit
has exact synonym: critical care ward
has exact synonym: intensive care ward
has exact synonym: intensive therapy unit
has exact synonym: intensive treatment unit
has exact synonym: intensive treatment ward

patient room
type: Class
subclass of: room
definition: A room which is used for patient care during a patient's visit or stay in a healthcare facility.
imported from: envo.owl
has exact synonym: patient-care room
has_narrow_synonym: examination room
has_narrow_synonym: patient bed room

medical clinic
type: Class
subclass of: healthcare facility
definition: A healthcare facility which is used to provide outpatient health care services.
imported from: envo.owl
has_broad_synonym: clinic
has exact synonym: ambulatory care clinic
has exact synonym: outpatient clinic

family practice clinic
type: Class
subclass of: medical clinic
definition: A medical clinic which is used to provide family medicine services.
imported from: envo.owl
has exact synonym: GP clinic
has exact synonym: GP office
has exact synonym: family care clinic
has exact synonym: family doctor clinic
has exact synonym: family doctor office
has exact synonym: family medicine clinic
has exact synonym: family medicine office
has exact synonym: general medicine clinic
has exact synonym: general practice clinic
has exact synonym: general practice office

long-term care facility
type: Class
subclass of: residential building
definition: A residential building which is used to provides long-term care for residents.
imported from: envo.owl
has exact synonym: LTC center
has exact synonym: LTC centre
has exact synonym: LTC facility
has exact synonym: long-term care center
has exact synonym: long-term care centre

group home facility
type: Class
subclass of: long-term care facility
definition: A long-term care facility which is used to provide care for people with complex health needs, and which typically has at least one caregiver in attendance twenty four hours a day.
imported from: envo.owl
has exact synonym: residential care facility

institutional building
type: Class
subclass of: building
definition: A building which is used by an organization which serves a long-established role in human society.
imported from: envo.owl
comment: This term needs further consideration and development as semantics of institution are ambiguous at scale - e.g. are hotels institutional buildings?

wet market
type: Class
subclass of: market
definition: A market which is used for the sale and purchase of perishable goods.
imported from: envo.owl

prison facility
type: Class
subclass of: human construction
definition: A human construction which is used to forcibly confine humans.
imported from: envo.owl
has exact synonym: correctional center correctional centre
has exact synonym: correctional facility
has exact synonym: detention center
has exact synonym: detention centre
has exact synonym: gaol
has exact synonym: jail
has exact synonym: lock-up
has exact synonym: penitentiary
has exact synonym: remand center
has exact synonym: remand centre

air vent
type: Class
subclass of: manufactured product
definition: A manufactured product consisting of a duct opening which allows air to circulate.
imported from: envo.owl
has_broad_synonym: vent

bedrail
type: Class
subclass of: pole
definition: A poll which is attached to the head, foot, or side of a bed frame.
imported from: envo.owl
has exact synonym: adult portable bed rail
has exact synonym: assist bar
has exact synonym: bed handle
has exact synonym: bed rail
has exact synonym: bed side rail
has exact synonym: grab bar
has exact synonym: half rail
has exact synonym: hospital bed rail
has exact synonym: safety rail
has exact synonym: side rail

control panel
type: Class
subclass of: manufactured product
definition: A manufactured product consisting of a panel on which control or monitoring instruments are set.
imported from: envo.owl
has exact synonym: console
has exact synonym: control board
has exact synonym: control unit
has exact synonym: display board
has exact synonym: display panel
has exact synonym: indicator panel
has exact synonym: instrument board
has exact synonym: instrument panel
has exact synonym: panel

door handle
type: Class
subclass of: manufactured product
definition: A manufactured product consisting of a handle used to open or close a door.
imported from: envo.owl
has exact synonym: door knob

handrail
type: Class
subclass of: pole
definition: A pole which provides stability or support when grasped by the hand.
imported from: envo.owl
has_broad_synonym: rail, railing
has exact synonym: hand rail

light switch
type: Class
subclass of: switch
definition: A switch which turns a light on or off.
imported from: envo.owl
has_broad_synonym: switch, dimmer switch
has exact synonym: lightswitch

locker
type: Class
subclass of: manufactured product
definition: A manufactured product which is a storage compartment with a lock.
imported from: envo.owl
has exact synonym: lockable cabinet
has exact synonym: lockable cupboard
has exact synonym: locking cabinet
has exact synonym: locking cupboard

nurse call button
type: Class
subclass of: switch
definition: A switch which allows patients in health care settings to alert a nurse or other health care staff member.
imported from: envo.owl
has exact synonym: nurse call cord

stainless steel
type: Class
subclass of: steel
definition: Steel which is composed primarily of a corrosion resistant alloy of iron and chromium.
imported from: envo.owl
has exact synonym: inox steel
has exact synonym: stainless

tissue paper
type: Class
subclass of: paper product
definition: A paper product which is thin translucent paper.
imported from: envo.owl
has exact synonym: tissue
comment: Tissue paper is often used for wrapping or for protecting delicate articles.

toilet bowl
type: Class
subclass of: plumbing fixture
definition: A plumbing fixture which is bowl-shaped, part of a toilet fixture, and capable of contain human waste until it is disposed of.
imported from: envo.owl
has exact synonym: lavatory bowl

window
type: Class
subclass of: manufactured product
definition: A manufactured product which is composed of one or more glass or other transparent or semi-transparent materials set inside a frame, and installed in wall, door, roof or vehicle surfaces to allow the passage of light, and sometimes air.
imported from: envo.owl
has exact synonym: casement
has exact synonym: casement window
has exact synonym: pane
has exact synonym: sash
has exact synonym: sash window
has exact synonym: windowpane

door
type: Class
subclass of: manufactured product
definition: A manufactured product which is composed of a hinged, sliding, or revolving barrier which is installed at the entrance to a building, room, vehicle, or in the framework of a cabinet.
imported from: envo.owl

sheet of paper
type: Class
subclass of: paper product
definition: A paper product which is a thin sheet material made of processed cellulose fibres.
imported from: envo.owl
has exact synonym: paper
has exact synonym: paper sheet

manure
type: Class
subclass of: environmental material
definition: An environmental material consisting of organic matter from plants and/or animals that is used in agriculture as fertilizer.
imported from: envo.owl
has_narrow_synonym: animal manure
has_narrow_synonym: compost
has_narrow_synonym: farm slurry
has_narrow_synonym: green manure
has_narrow_synonym: liquid manure
comment: Most manure consists of animal feces; other sources include compost and green manure.

switch
type: Class
subclass of: manufactured product
definition: A device which can connect, disconnect, or divert current in an electrical circuit.
imported from: envo.owl

steel
type: Class
subclass of: manufactured product
definition: A manufactured product which is an alloy of iron and which typically contains a few tenths of a percent of carbon.
imported from: envo.owl

plastic
type: Class
subclass of: environmental material
definition: An environnmental material which 1) is composed primarily of polymers with high molecular mass and 2) once deformed does not spontaneously return to its original shape.
imported from: envo.owl
has exact synonym: Plastik @de
has exact synonym: plastica @it
has exact synonym: 塑膠 @zh
has_narrow_synonym: Kunststoff @de
in_subset: envoPlastics
comment: "High molecular mass" can be ambiguous as it does not set a threshold for what is considered "high". Here we make no commitment to a threshold.

synthetic plastic
type: Class
subclass of: plastic
definition: A plastic which is composed primarily of polymers produced by a manufacturing process.
imported from: envo.owl
database_cross_reference: c 5998
database_cross_reference: http://eurovoc.europa.eu/1837
has exact synonym: manufactured plastic
in_subset: envoPlastics
in_subset: envoPolar

common vehicle transmission
type: Class
subclass of: TRANS_0000002
definition: Transmission of a disease agent (infectious pathogen, toxic chemical, etc.) from a source that is common to those who acquire the disease. Common vehicles include air, water, food, injected substances. Legionellosis is an example of common vehicle spread in air that has passed through air conditioning equipment contaminated by the causal organism. HIV disease and hepatitis B and C can be spread among illicit drug users by the common vehicle of contaminated needles and syringes. Cholera and many other waterborne diseases are spread by the common vehicle of contaminated water.

experimental subject role
type: Class
subclass of: person role
definition: A role that inheres in a material that is input as the subject of interest in a scientific technique - either as an entity about which data is generated in an assay or study, or an entity that is transformed or modified in a material processing technique (e.g. the source from which a biological sample is taken)

exposure event
type: Class
subclass of: process
definition: An interaction between an exposure stressor and an exposure_receptor.
imported from: ecto.owl

subject health status
type: Class
subclass of: organism datum
subclass of: Restriction
user interface feature: depth:1
has curation status: IAO_0000428
definition: The condition of an organism in all aspects (e.g., functional or metabolic efficiency).
editor note: See technical discussion about logic of assigning health status: https://www.w3.org/2001/sw/BestPractices/OEP/Lists-of-values-20040625/
definition source: https://en.wikipedia.org/wiki/Medical_state
created_by: cmattin
has exact synonym: condition
has exact synonym: medical condition
has exact synonym: medical state
comment: Damion Dooley note: GenEpiO includes various health status descriptors here; many are annotated as included in the American AHA HIPPA or United Kingdom NHS terminologies. The challenge is to map them or order them in such a way that merged data can be analyzed.

Condition
type: Axiom
annotated source: subject health status
annotated property: subClassOf
annotated target: Restriction

Condition
type: Axiom
annotated source: subject health status
annotated property: subClassOf
annotated target: Restriction

inhalation
type: Class
subclass of: common vehicle transmission
definition: The process of drawing in by breathing.

redox potential
type: Class
subclass of: environmental datum
definition: Redox potential, measured relative to a hydrogen cell, indicating oxidation or reduction potential
alternative term: E'
alternative term: oxidation-reduction potential
definition source: MIxS
imported from: fix.owl

symptom onset date
type: Class
subclass of: symptom history item
has curation status: IAO_0000428
definition: A symptom onset date is a date-time entity that marks the start of one or more reported symptoms pertaining to an episode of human or animal illness
definition editor: Damion Dooley

food product
type: Class
subclass of: agency food product type
has curation status: IAO_0000428
definition: A substance, usually composed primarily of carbohydrates, fats, water and/or proteins, that can be eaten or drunk by an animal or human being for nutrition or pleasure.
definition: Food material for humans and animals which is processed with the intention that it be consumable as a whole or added to other food products.
definition editor: Damion Dooley
imported from: foodon.owl
label: foodon product type

mammalian meat food product
type: Class
subclass of: vertebrate animal food product
definition: A food product made of meat, the skeletal muscle and associated fat, and other edible tissues such as organs, livers, skin, brains, bone marrow, kidneys, or lungs, of mammals.
imported from: foodon.owl
database_cross_reference: siren:F17332

plant food product
type: Class
subclass of: food product by organism
definition: This class includes food products which are derived from or produced by a plant.
imported from: foodon.owl

pork meat food product
type: Class
subclass of: pig food product
definition: A food product made from domestic pig meat (Sus domesticus or Sus scrofa scrofa).
imported from: foodon.owl

cow food product
type: Class
subclass of: bovine meat food product
definition: A food product that is derived from some cow.
imported from: foodon.owl

pork chop food product
type: Class
subclass of: pork meat food product
definition: A cut of meat (a meat chop) cut perpendicularly to the spine of the pig and usually containing a rib or part of a vertebra, served as an individual portion.
imported from: foodon.owl

vertebrate animal food product
type: Class
subclass of: animal food product
definition: A food product which is derived from or produced by an animal that has a vertibrae.
imported from: foodon.owl

poultry meat food product
type: Class
subclass of: poultry food product
definition: A food product made from domesticated bird meat.
imported from: foodon.owl

swine food product
type: Class
subclass of: mammalian meat food product
definition: Suidae is a family of artiodactyl mammals which are commonly called pigs, hogs or boars. In addition to numerous fossil species, 17 extant species are currently recognized (or 18 counting domestic pigs and wild boars separately), classified into between four and eight genera. The family includes the domestic pig, Sus scrofa domesticus or Sus domesticus, in addition to numerous species of wild pig, such as babirusas and warthogs. All suids, or swine, are native to the Old World, ranging from Asia to Europe and Africa.
imported from: foodon.owl

bovine meat food product
type: Class
subclass of: mammalian meat food product
imported from: foodon.owl

fungus food product
type: Class
subclass of: food product by organism
definition: A food product consisting of an edible fungi or mushroom or yeast.
imported from: foodon.owl

microbial food product
type: Class
subclass of: food product by organism
definition: A food product derived from one or more microorganisms including bacteria, mold, and yeast.
imported from: foodon.owl

invertebrate animal food product
type: Class
subclass of: animal food product
imported from: foodon.owl

prepared food product
type: Class
subclass of: processed food product
definition: Food product that is 1) ready or nearly ready for consumption; 2) usually a composite of several foods or ingredients that often belong to distinct product types; 3) usually formulated, mixed and partially or fully cooked.
imported from: foodon.owl

food (cooked)
type: Class
subclass of: food product by process
definition: A food product which is an output of a food cooking process.
imported from: foodon.owl

algal food product
type: Class
subclass of: food product by organism
definition: This food product type includes food products which are derived from a large, diverse group of photosynthetic organisms.
imported from: foodon.owl
database_cross_reference: siren:F10419

fish food product
type: Class
subclass of: vertebrate animal food product
definition: A fish food product includes products made from any fish species (aquatic vertebrate with gills and fins).
imported from: foodon.owl

avian animal food product
type: Class
subclass of: vertebrate animal food product
definition: A food product that is derived from some avian animal.
imported from: foodon.owl

beef (ground)
type: Class
subclass of: cow food product
subclass of: piece(s) of beef
definition: Beef that has been ground.
imported from: foodon.owl

poultry food product
type: Class
subclass of: avian animal food product
definition: A food product from a category of domestic birds kept for meat, eggs, and feathers including fowl such as chickens, turkeys, and waterfowls such as domestic ducks and geese and other meat birds such as pigeons and doves and games birds including pheasants.
definition: A food product that is derived from some poultry.
imported from: foodon.owl

turkey meat food product
type: Class
subclass of: poultry meat food product
definition: A turkey meat food product is any food product made predominantly of turkey parts.
imported from: foodon.owl

food fermentation
type: Class
subclass of: microbial/enzymatic modification process
subclass of: food preservation process
definition: A fermentation process in which either carbohydrates, proteins or fats are modified through microbial, enzymatic and/or other biological process.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

animal primal cut
type: Class
subclass of: butchery cut of animal
definition: A cut of meat that is initially separated from the carcass of an animal during butchering.
imported from: foodon.owl

dolphinfish food product
type: Class
subclass of: fish food product
definition: A product deriving from mahi-mahi or common dolphinfish (Coryphaena hippurus) also widely called dorado and dolphin.
imported from: foodon.owl

herring food product
type: Class
subclass of: fish food product
imported from: foodon.owl

lamb meat food product
type: Class
subclass of: sheep meat food product
definition: Lamb meat food product is a meat product taken from a lamb, a sheep less than a year old.
imported from: foodon.owl

food product by consumer group
type: Class
subclass of: food product
imported from: foodon.owl

sheep meat food product
type: Class
subclass of: mammalian meat food product
imported from: foodon.owl

tuna food product
type: Class
subclass of: fish food product
imported from: foodon.owl

food product by organism
type: Class
subclass of: food product
definition: A food product consisting of food material derived primarily from a single organism.
imported from: foodon.owl

food material
type: Class
subclass of: environmental material
definition: Any substance that can be consumed by an organism to satisfy nutritional or other health needs, or to provide a social or organoleptic food experience
definition source: Food
imported from: envo.owl
imported from: foodon.owl
has exact synonym: food
has exact synonym: foodstuff
has exact synonym: nourishment
has exact synonym: sustenance
comment: This class is the top of FOODON's main food product hierarchy which is described in the https://www.foodon.org website, and can be searched in lookup services like https://www.ebi.ac.uk/ols/

meat roasting
type: Class
subclass of: food baking
definition: Roasting is a baking process when the food being baked is meats
imported from: foodon.owl

food evaporation process
type: Class
subclass of: physical/chemical modification process
definition: A food evaporation process is the process of removing water from a food.
imported from: foodon.owl

food transformation process
type: Class
subclass of: process
definition: A process involving the physical transformation of a food source or food product into some derived organic material or food product
imported from: foodon.owl

invertebrate animal
type: Class
subclass of: animal
definition: Invertebrates are animals that neither possess nor develop a vertebral column (commonly known as a backbone or spine), derived from the notochord. This includes all animals apart from the subphylum Vertebrata.
imported from: foodon.owl

food material by characteristic
type: Class
subclass of: food material
definition: Food material which has been categorized by a characteristic such as granularity or temperature.
imported from: foodon.owl

shallow frying
type: Class
subclass of: cooking in small amount of fat or oil
definition: A form of frying characterized by the use of minimal cooking oil or fat (compared to shallow frying or deep frying); typically using just enough oil to lubricate the pan. A pan fry takes place at lower heat than does a sauté.
imported from: foodon.owl

food material characteristic
type: Class
subclass of: PATO_0001241
definition: A physical object quality which describes a characteristic of some food material.
imported from: foodon.owl

pork loin
type: Class
subclass of: pork meat food product
subclass of: pork primal cut
definition: A cut of meat from a pig, that comes from the tissue along the dorsal side of the rib cage.
imported from: foodon.owl

cut of beef, british
type: Class
subclass of: butchery cut of beef
imported from: foodon.owl

beef rump cut (british)
type: Class
subclass of: cut of beef, british
imported from: foodon.owl

butchery cut of beef
type: Class
subclass of: piece of beef
subclass of: butchery cut of animal
definition: A butchery cut of beef that is primal, sub-primal or a retail cut.
imported from: foodon.owl

food product by process
type: Class
subclass of: food product
definition: A food product organized by the process which it results from.
imported from: foodon.owl

food scalding
type: Class
subclass of: food cooking
definition: A method of precooking food where a liquid is heated to just below the boiling point. Often used to retard the spoiling of milk.
imported from: foodon.owl

pig food product
type: Class
subclass of: swine food product
definition: A food product that is derived from some pig.
imported from: foodon.owl
label: pork food product

fish fillet
type: Class
subclass of: animal fillet
subclass of: fish (portion cut)
definition: A fish fillet, from the French word filet meaning a thread or strip, is the flesh of a fish which has been cut or sliced away from the bone by cutting lengthwise along one side of the fish parallel to the backbone.
imported from: foodon.owl

mahi mahi fillet
type: Class
subclass of: dolphinfish food product
subclass of: fish fillet
imported from: foodon.owl

pet food
type: Class
subclass of: food product for animal
definition: Pet food is plant or animal material intended for consumption by pets.
imported from: foodon.owl

turkey breast
type: Class
subclass of: turkey meat food product
subclass of: turkey organ
subclass of: piece of turkey meat
subclass of: poultry breast
definition: A whole breast that is obtained from a turkey.
imported from: foodon.owl

barramundi food product
type: Class
subclass of: fish food product
imported from: foodon.owl

barramundi fillet
type: Class
subclass of: fish fillet
subclass of: barramundi food product
imported from: foodon.owl

herring fillet
type: Class
subclass of: herring food product
subclass of: fish fillet
definition: A herring fillet is a fillet cut of herring
imported from: foodon.owl

tuna fillet
type: Class
subclass of: tuna food product
subclass of: fish fillet
definition: A fillet cut of a tuna fish.
imported from: foodon.owl

beef short rib
type: Class
subclass of: cow food product
subclass of: beef retail cut
definition: A beef cut that is derived from the 6th, 7th and 8th rib of the rib primal.
imported from: foodon.owl

synbiotic claim
type: Class
subclass of: other ingredient- or constituent-related claim
definition: Synbiotic claim refers to food ingredients or dietary supplements combining probiotics and prebiotics in a form of synergism that beneficially affect the host.
imported from: foodon.owl

beef prime rib roast
type: Class
subclass of: cow food product
subclass of: beef roast
definition: A cut of beef from the primal rib, one of the nine primal cuts of beef. While the entire rib section comprises ribs six through 12, a standing rib roast may contain anywhere from two to seven ribs.
imported from: foodon.owl

fish steak
type: Class
subclass of: fish (portion cut)
definition: A fish steak, alternatively known as a fish cutlet, is a cut of fish which is cut perpendicular to the spine and can either include the bones or be boneless.
imported from: foodon.owl

cutlet
type: Class
subclass of: butchery cut of animal
definition: A thin slice of meat from the leg or ribs of veal, pork, chicken, or mutton.
imported from: foodon.owl

animal
type: Class
subclass of: organism by alternate grouping
subclass of: UBERON_0000468
definition: A whole animal.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

beef steak
type: Class
subclass of: cow food product
subclass of: beef retail cut
definition: A beef meat cut that has a flat-cut appearance.
imported from: foodon.owl

beef loin
type: Class
subclass of: cow food product
subclass of: beef primal cut
definition: A beef primal cut that comes from the area below the backbone .
definition: A portion of meat from either the short loin, the sirloin, or the tenderloin muscle area.
imported from: foodon.owl

beef tenderloin
type: Class
subclass of: beef loin
definition: A cut of beef corresponding to the psoas major muscle, which is very tender.
imported from: foodon.owl

beef top loin steak
type: Class
subclass of: beef loin
definition: A boneless steak cut from the sirloin region
imported from: foodon.owl

beef T-bone steak
type: Class
subclass of: beef steak
subclass of: beef loin
definition: A beef steak that is prepared from the beef short loin. The maximum width of the tenderloin must be at least 1/2 inch (13mm) when measured parallel to the length of the backbone.
definition: A steak of beef cut from the front of the short loin area.
imported from: foodon.owl

beef porterhouse steak
type: Class
subclass of: beef steak
subclass of: beef loin
definition: A beef steak that is prepared from the beef short loin. The maximum width of the tenderloin must be atleast 1.25 inches (3.2cm) when measured parallel to the length of the backbone.
definition: A steak of beef cut from the back of the short loin area.
imported from: foodon.owl

filet mignon (North America)
type: Class
subclass of: beef retail cut
definition: A steak cut of beef taken from the smaller end of the tenderloin, or psoas major of the cow carcass, usually a steer or heifer.
imported from: foodon.owl

chicken fillet
type: Class
subclass of: animal fillet
subclass of: butchery cut of chicken
definition: A butchery cut of chicken that is typically boneless.
imported from: foodon.owl

overripe
type: Class
subclass of: fruit ripeness
definition: A fruit ripeness characteristic in which a fruit has surpassed ripeness and is undergoing decomposition.
imported from: foodon.owl

slightly ripe
type: Class
subclass of: fruit ripeness
definition: A fruit ripeness characteristic in which a fruit has some ripe part(s) or is about to achieve full maturity.
imported from: foodon.owl

pet food (raw)
type: Class
subclass of: pet food
subclass of: food (raw)
definition: A pet food that has not been heat treated or otherwise preserved.
imported from: foodon.owl

pet treat
type: Class
subclass of: pet food
definition: A food item intended to provide pleasure or reward to an animal, and which might not be nutritious.
imported from: foodon.owl

food contact material
type: Class
subclass of: material entity
definition: Food contact materials are materials that are intended to be in contact with food. These can be things that are quite obvious like a glass or a can for soft drinks as well as machinery in a food factory or a coffee machine.
imported from: foodon.owl

tunnel farming
type: Class
subclass of: under glass/protected plant cultivation
definition: Cultivation of plants within a polytunnel or similar tunnel.
imported from: foodon.owl

food animal rearing
type: Class
subclass of: domestic or cultivated food production
definition: The rearing of domesticated animals for food.
imported from: foodon.owl

industrial livestock production
type: Class
subclass of: food animal rearing
definition: An approach to animal husbandry designed to maximize production, while minimizing costs by keeping livestock such as cattle, poultry, and fish at high stocking densities, at large scale, and using automated feeding systems.
imported from: foodon.owl

controlled environment agriculture (CEA) production
type: Class
subclass of: under glass/protected plant cultivation
definition: A technology-based approach toward food production that aims to provide optimal growing conditions throughout the development of a crop located within an enclosed growing structure such as a greenhouse or building.
imported from: foodon.owl

aquaculture production
type: Class
subclass of: food animal rearing
imported from: foodon.owl

aquaculture open-pen rearing
type: Class
subclass of: aquaculture production
definition: Aquatic farmed food production located offshore, in coastal areas or in freshwater lakes, open-net pens, or “cages”, that allow for free exchange between the farm and the surrounding environment.
imported from: foodon.owl

aquaculture closed containment pen rearing
type: Class
subclass of: aquaculture production
imported from: foodon.owl

fish meat
type: Class
subclass of: fish (whole or pieces)
definition: The flesh of fish
imported from: foodon.owl

ground sirloin
type: Class
subclass of: beef (ground)
subclass of: piece of cow
subclass of: sirloin
definition: A meat made up from the beef cut is known as sirloin. Ground sirloin is ground sirloin meat.
imported from: foodon.owl

teriyaki cooking method
type: Class
subclass of: broiling or grilling
definition: A Japanese cooking method in which food is broiled or grilled with a glaze of soy sauce, mirin, and sugar.
imported from: foodon.owl

random sample animal meat cut
type: Class
subclass of: butchery cut of animal
definition: An animal meat (cut) and an output of simple random sampling.
imported from: foodon.owl

direct heating of container
type: Class
subclass of: heating container
definition: A heating container process in which the container conducts heat by being in proximity to an open flame, a hot surface or an oven.
imported from: foodon.owl

heating liquid in container
type: Class
subclass of: heating container
definition: A heating container process in which the temperature of contained liquid is raised to a threshold.
imported from: foodon.owl

cut of beef, mexican
type: Class
subclass of: butchery cut of beef
imported from: foodon.owl

diezmillo
type: Class
subclass of: cut of beef, mexican
definition: A cut of beef and part of the sub-prime cut known as the chuck.
imported from: foodon.owl

saku
type: Class
subclass of: fish (portion cut)
definition: A Japanese term to describe a uniformly cut block of skinless and boneless seafood.
imported from: foodon.owl

animal food product
type: Class
subclass of: food product by organism
definition: A food product that is derived from some animal.
imported from: foodon.owl

meat strip
type: Class
subclass of: butchery cut of animal
definition: A cut of meat which is long, narrow and boneless.
imported from: foodon.owl

chicken breast cutlet
type: Class
subclass of: cutlet
definition: A cutlet made from chicken breast.
imported from: foodon.owl

organism piece
type: Class
subclass of: organism material
definition: A piece or pieces or amount of substance derived from one or more organisms.
imported from: foodon.owl

piece of animal
type: Class
subclass of: organism piece
subclass of: animal material
definition: A severed part of an animal.
imported from: foodon.owl

piece(s) of animal
type: Class
subclass of: object aggregate
subclass of: animal material
definition: One or more pieces of animals.
imported from: foodon.owl

animal sub-primal cut
type: Class
subclass of: butchery cut of animal
definition: A smaller cut of meat that is obtained from the larger primal cut of an animal.
imported from: foodon.owl

animal retail cut
type: Class
subclass of: butchery cut of animal
definition: An animal meat cut that is derived from a sub-primal, individual muscle cut or minor primal cut.
imported from: foodon.owl

animal organ
type: Class
subclass of: piece of animal
definition: An organ that derives from an animal.
imported from: foodon.owl

beef primal cut
type: Class
subclass of: animal primal cut
subclass of: butchery cut of beef
definition: A cut of beef that is initially separated from the carcass of a{n} {organism} during butchering.
imported from: foodon.owl

elk roast
type: Class
subclass of: animal retail cut
subclass of: elk retail cut
definition: A retail cut of meat from an elk that is of a size for slicing into more than one portion and is suitable for roasting.
imported from: foodon.owl

beef sub-primal cut
type: Class
subclass of: butchery cut of beef
subclass of: animal sub-primal cut
definition: A smaller cut of beef that is obtained from the larger primal cut of beef.
imported from: foodon.owl

beef roast
type: Class
subclass of: beef retail cut
definition: A retail cut of meat from a beef that is of a size for slicing into more than one portion and is suitable for roasting.
imported from: foodon.owl

beef retail cut
type: Class
subclass of: butchery cut of beef
subclass of: animal retail cut
definition: A cut of beef that is derived from a sub-primal, individual muscle cut or minor primal cut.
imported from: foodon.owl

lamb roast
type: Class
subclass of: animal roast
subclass of: lamb retail cut
definition: A retail cut of meat from a lamb that is of a size for slicing into more than one portion and is suitable for roasting.
imported from: foodon.owl

pork roast
type: Class
subclass of: pork retail cut
subclass of: animal roast
definition: A retail cut of meat from a pork that is of a size for slicing into more than one portion and is suitable for roasting.
imported from: foodon.owl

veal roast
type: Class
subclass of: animal roast
subclass of: veal retail cut
definition: A retail cut of meat from a veal that is of a size for slicing into more than one portion and is suitable for roasting.
imported from: foodon.owl

lamb primal cut
type: Class
subclass of: animal primal cut
subclass of: butchery cut of lamb
definition: A cut of meat that is initially separated from the carcass of a lamb during butchering.
imported from: foodon.owl

pork primal cut
type: Class
subclass of: animal primal cut
subclass of: butchery cut of pork
definition: A cut of meat that is initially separated from the carcass of a pork during butchering.
imported from: foodon.owl

veal primal cut
type: Class
subclass of: animal primal cut
subclass of: butchery cut of veal
definition: A cut of meat that is initially separated from the carcass of a veal during butchering.
imported from: foodon.owl

lamb sub-primal cut
type: Class
subclass of: animal sub-primal cut
subclass of: butchery cut of lamb
definition: A smaller cut of meat that is obtained from the larger primal cut of a lamb.
imported from: foodon.owl

pork sub-primal cut
type: Class
subclass of: animal sub-primal cut
subclass of: butchery cut of pork
definition: A smaller cut of meat that is obtained from the larger primal cut of a pork.
imported from: foodon.owl

veal sub-primal cut
type: Class
subclass of: animal sub-primal cut
subclass of: butchery cut of veal
definition: A smaller cut of meat that is obtained from the larger primal cut of a veal.
imported from: foodon.owl

pork retail cut
type: Class
subclass of: animal retail cut
subclass of: butchery cut of pork
definition: A pork meat cut that is derived from a sub-primal, individual muscle cut or minor primal cut.
imported from: foodon.owl

lamb chop
type: Class
subclass of: animal chop
subclass of: lamb retail cut
definition: A retail cut of meat from a lamb that is perpendicular to the spine, and usually containing a rib or riblet part of a vertebra.
imported from: foodon.owl

pork chop
type: Class
subclass of: pork retail cut
subclass of: animal chop
definition: A retail cut of meat from a pork that is perpendicular to the spine, and usually containing a rib or riblet part of a vertebra.
imported from: foodon.owl

piece of pig
type: Class
subclass of: piece of animal
subclass of: pig material
definition: A severed part of a pork.
imported from: foodon.owl

piece of cow
type: Class
subclass of: piece of animal
subclass of: cow material
definition: A severed part of a beef.
imported from: foodon.owl

piece(s) of cow
type: Class
subclass of: piece(s) of animal
subclass of: cow material
definition: One or more pieces of cows.
imported from: foodon.owl

bison primal cut
type: Class
subclass of: animal primal cut
subclass of: butchery cut of bison
definition: A cut of meat that is initially separated from the carcass of a bison during butchering.
imported from: foodon.owl

bison sub-primal cut
type: Class
subclass of: animal sub-primal cut
subclass of: butchery cut of bison
definition: A smaller cut of meat that is obtained from the larger primal cut of a bison.
imported from: foodon.owl

buffalo primal cut
type: Class
subclass of: animal primal cut
subclass of: butchery cut of buffalo
definition: A cut of meat that is initially separated from the carcass of a buffalo during butchering.
imported from: foodon.owl

buffalo sub-primal cut
type: Class
subclass of: animal sub-primal cut
subclass of: butchery cut of buffalo
definition: A smaller cut of meat that is obtained from the larger primal cut of a buffalo.
imported from: foodon.owl

buffalo retail cut
type: Class
subclass of: animal retail cut
subclass of: butchery cut of buffalo
definition: A buffalo meat cut that is derived from a sub-primal, individual muscle cut or minor primal cut.
imported from: foodon.owl

buffalo steak
type: Class
subclass of: buffalo retail cut
definition: A buffalo meat cut that has a flat-cut appearance.
imported from: foodon.owl

iron rich label claim
type: Class
subclass of: high {name of vitamin/s} and/or {name of mineral/s} nutrition claim
definition: A food product containing a quantity of iron large enough to make a significant contribution to nutritional needs.
imported from: foodon.owl

vitamin A rich label claim
type: Class
subclass of: high {name of vitamin/s} and/or {name of mineral/s} nutrition claim
definition: A food product containing a quantity of vitamin A large enough to make a significant contribution to nutritional needs.
imported from: foodon.owl

beef round
type: Class
subclass of: beef primal cut
definition: A beef cut that comes from the 'round', the rear leg of the beef.
imported from: foodon.owl

beef round (raw)
type: Class
subclass of: beef round
subclass of: beef primal cut (raw)
definition: A raw beef round cut.
imported from: foodon.owl

beef bottom round
type: Class
subclass of: beef sub-primal cut
definition: A beef cut that comes from the outside of the rear leg.
imported from: foodon.owl

beef bottom round (raw)
type: Class
subclass of: beef bottom round
subclass of: beef sub-primal cut (raw)
definition: A raw beef bottom round cut.
imported from: foodon.owl

beef bottom round steak
type: Class
subclass of: beef steak
definition: A steak cut from the beef bottom round.
imported from: foodon.owl

beef bottom round steak (raw)
type: Class
subclass of: beef bottom round steak
subclass of: beef steak (raw)
definition: A raw beef bottom round steak.
imported from: foodon.owl

beef bottom round steak (boneless)
type: Class
subclass of: beef bottom round steak
subclass of: piece of beef (boneless)
definition: A boneless beef bottom round steak.
imported from: foodon.owl

beef bottom round steak (boneless, raw)
type: Class
subclass of: beef bottom round steak (raw)
subclass of: beef bottom round steak (boneless)
subclass of: piece of animal meat (boneless, raw)
definition: A raw and boneless beef bottom round steak.
imported from: foodon.owl

beef bottom round roast
type: Class
subclass of: beef roast
definition: A roast cut from the beef bottom round.
imported from: foodon.owl

beef bottom round roast (raw)
type: Class
subclass of: beef bottom round roast
subclass of: beef roast (raw)
definition: A raw beef bottom round roast.
imported from: foodon.owl

beef bottom round roast (boneless)
type: Class
subclass of: beef bottom round roast
subclass of: beef roast (boneless)
definition: A boneless beef bottom round roast.
imported from: foodon.owl

beef bottom round roast (boneless, raw)
type: Class
subclass of: beef bottom round roast (raw)
subclass of: beef bottom round roast (boneless)
subclass of: beef roast (boneless, raw)
definition: A raw and boneless beef bottom round roast.
imported from: foodon.owl

beef top round
type: Class
subclass of: beef sub-primal cut
definition: A beef cut that comes from the inside of the rear leg.
imported from: foodon.owl

beef top round (raw)
type: Class
subclass of: beef top round
subclass of: beef sub-primal cut (raw)
definition: A raw beef top round cut.
imported from: foodon.owl

beef top round steak
type: Class
subclass of: beef steak
definition: A steak cut from the beef top round.
imported from: foodon.owl

beef top round steak (raw)
type: Class
subclass of: beef top round steak
subclass of: beef steak (raw)
definition: A raw beef top round steak.
imported from: foodon.owl

beef top round steak (boneless)
type: Class
subclass of: beef top round steak
subclass of: piece of beef (boneless)
definition: A boneless beef top round steak.
imported from: foodon.owl

beef top round steak (boneless, raw)
type: Class
subclass of: beef top round steak (raw)
subclass of: beef top round steak (boneless)
subclass of: piece of animal meat (boneless, raw)
definition: A raw and boneless beef top round steak.
imported from: foodon.owl

beef top round steak (cap off)
type: Class
subclass of: beef steak
definition: A beef top round steak in which the top cap portion has been separated off.
imported from: foodon.owl

beef top round steak (cap off, raw)
type: Class
subclass of: beef top round steak (cap off)
subclass of: beef steak (raw)
definition: A raw beef top round steak in which the top cap portion has been separated off.
imported from: foodon.owl

beef top round steak (cap off, boneless, raw)
type: Class
subclass of: beef top round steak (boneless, raw)
subclass of: beef top round steak (cap off, raw)
definition: A raw and boneless beef top round steak in which the top cap portion has been separated off.
imported from: foodon.owl

beef top round roast
type: Class
subclass of: beef roast
definition: A roast cut from the beef top round.
imported from: foodon.owl

beef top round roast (raw)
type: Class
subclass of: beef top round roast
subclass of: beef roast (raw)
definition: A raw beef top round roast.
imported from: foodon.owl

beef top round roast (boneless)
type: Class
subclass of: beef top round roast
subclass of: beef roast (boneless)
definition: A boneless beef top round roast.
imported from: foodon.owl

beef top round roast (boneless, raw)
type: Class
subclass of: beef top round roast (raw)
subclass of: beef top round roast (boneless)
subclass of: beef roast (boneless, raw)
definition: A raw and boneless beef top round roast.
imported from: foodon.owl

beef sirloin tip
type: Class
subclass of: beef sub-primal cut
definition: A beef cut that comes from the round primal, and is found on the front end of the rear leg.
imported from: foodon.owl

beef sirloin tip (raw)
type: Class
subclass of: beef sirloin tip
subclass of: beef sub-primal cut (raw)
definition: A raw beef sirloin tip cut.
imported from: foodon.owl

beef sirloin tip roast
type: Class
subclass of: beef roast
definition: A roast cut from the beef sirloin tip.
imported from: foodon.owl

beef sirloin tip roast (raw)
type: Class
subclass of: beef sirloin tip roast
subclass of: beef roast (raw)
definition: A raw beef sirloin tip roast.
imported from: foodon.owl

beef sirloin tip steak
type: Class
subclass of: beef steak
definition: A steak cut from the beef sirloin tip.
imported from: foodon.owl

beef sirloin tip steak (raw)
type: Class
subclass of: beef sirloin tip steak
subclass of: beef steak (raw)
definition: A raw beef sirloin tip steak.
imported from: foodon.owl

beef sirloin tip side roast
type: Class
subclass of: beef roast
definition: A roast that derives from beef sirloin tip and only consists of M.vastus lateralis.
imported from: foodon.owl

beef sirloin tip side roast (raw)
type: Class
subclass of: beef sirloin tip side roast
subclass of: beef roast (raw)
definition: A raw beef sirloin tip side roast.
imported from: foodon.owl

beef sirloin tip side steak
type: Class
subclass of: beef steak
definition: A steak cut from the beef sirloin tip side roast.
imported from: foodon.owl

beef sirloin tip side steak (raw)
type: Class
subclass of: beef sirloin tip side steak
subclass of: beef steak (raw)
definition: A raw beef sirloin tip side steak.
imported from: foodon.owl

beef sirloin tip center roast
type: Class
subclass of: beef roast
definition: A roast that derives from beef sirloin tip and only consists of M.rectus femoris.
imported from: foodon.owl

beef sirloin tip center roast (raw)
type: Class
subclass of: beef sirloin tip center roast
subclass of: beef roast (raw)
definition: A raw beef sirloin tip center roast.
imported from: foodon.owl

beef sirloin tip center steak
type: Class
subclass of: beef steak
definition: A steak cut from the beef sirloin tip center roast.
imported from: foodon.owl

beef sirloin tip center steak (raw)
type: Class
subclass of: beef sirloin tip center steak
subclass of: beef steak (raw)
definition: A raw beef sirloin tip center steak.
imported from: foodon.owl

beef eye of round
type: Class
subclass of: beef sub-primal cut
definition: A beef cut that is an elongated muscle located in the center of the beef round cut, and thus is named “Eye.”
imported from: foodon.owl

beef eye of round (raw)
type: Class
subclass of: beef eye of round
subclass of: beef sub-primal cut (raw)
definition: A raw beef eye of round cut.
imported from: foodon.owl

beef eye of round roast
type: Class
subclass of: beef roast
definition: A roast cut from the beef eye of round.
imported from: foodon.owl

beef eye of round roast (raw)
type: Class
subclass of: beef eye of round roast
subclass of: beef roast (raw)
definition: A raw beef eye of round roast.
imported from: foodon.owl

beef eye of round steak
type: Class
subclass of: beef steak
definition: A steak cut from the beef eye of round.
imported from: foodon.owl

beef eye of round steak (raw)
type: Class
subclass of: beef eye of round steak
subclass of: beef steak (raw)
definition: A raw beef eye of round steak.
imported from: foodon.owl

beef chuck
type: Class
subclass of: beef primal cut
definition: A beef cut that extends from the neck to the fifth rib and includes the shoulder blade and upper arm.
imported from: foodon.owl

beef chuck tender steak
type: Class
subclass of: beef steak
definition: A steak cut from the beef chuck tender.
imported from: foodon.owl

beef chuck tender steak (raw)
type: Class
subclass of: beef chuck tender steak
subclass of: beef steak (raw)
definition: A raw beef chuck tender steak.
imported from: foodon.owl

beef chuck tender roast
type: Class
subclass of: beef roast
definition: A roast cut from the beef chuck tender.
imported from: foodon.owl

beef chuck tender roast (raw)
type: Class
subclass of: beef chuck tender roast
subclass of: beef roast (raw)
definition: A raw beef chuck tender roast.
imported from: foodon.owl

beef chuck roll
type: Class
subclass of: beef sub-primal cut
definition: A large, boneless cut that comes from between the ribs and backbone. It contains a mix of tender and somewhat tough muscles, which are fabricated into smaller cuts known as the chuck eye roll and the chuck under blade.
imported from: foodon.owl

beef chuck roll (raw)
type: Class
subclass of: beef chuck roll
subclass of: beef sub-primal cut (raw)
definition: A raw beef chuck roll cut.
imported from: foodon.owl

beef chuck eye roll
type: Class
subclass of: beef retail cut
definition: The top portion of the chuck roll that is separated from the under-blade section.
imported from: foodon.owl

beef chuck eye roll (raw)
type: Class
subclass of: beef chuck eye roll
subclass of: beef retail cut (raw)
definition: A raw beef chuck eye roll cut.
imported from: foodon.owl

beef chuck eye roast
type: Class
subclass of: beef roast
definition: A roast cut from any portion of the chuck eye roll, typically the center.
imported from: foodon.owl

beef chuck eye roast (raw)
type: Class
subclass of: beef chuck eye roast
subclass of: beef roast (raw)
definition: A raw beef chuck eye roast.
imported from: foodon.owl

beef chuck eye steak
type: Class
subclass of: beef steak
definition: A steak cut from the rib end only of the chuck eye roll.
imported from: foodon.owl

beef chuck eye steak (raw)
type: Class
subclass of: beef chuck eye steak
subclass of: beef steak (raw)
definition: A raw beef chuck eye steak.
imported from: foodon.owl

beef country-style rib
type: Class
subclass of: beef roast
definition: A cut made by splitting a chuck eye roll in half lengthwise, resulting in two boneless, country-style ribs.
imported from: foodon.owl

beef country-style rib (raw)
type: Class
subclass of: beef country-style rib
subclass of: beef roast (raw)
definition: A raw beef country-style rib.
imported from: foodon.owl

beef under blade
type: Class
subclass of: beef retail cut
definition: A meat cut that is the flatter portion of the Chuck Roll and is under the Chuck Eye Roll.
imported from: foodon.owl

beef sierra steak
type: Class
subclass of: beef steak
definition: A thin muscle that lays in the seam between the chuck eye roll and under blade.
imported from: foodon.owl

beef sierra steak (raw)
type: Class
subclass of: beef sierra steak
subclass of: beef steak (raw)
definition: A raw beef sierra steak.
imported from: foodon.owl

beef denver steak
type: Class
subclass of: beef steak
definition: A beef cut from the center of the under blade.
imported from: foodon.owl

beef denver steak (raw)
type: Class
subclass of: beef denver steak
subclass of: beef steak (raw)
definition: A raw beef denver steak.
imported from: foodon.owl

beef denver roast
type: Class
subclass of: beef roast
definition: A roast cut in which under blade with other muscles and connective tissue are removed and either left whole or portioned.
imported from: foodon.owl

beef denver roast (raw)
type: Class
subclass of: beef denver roast
subclass of: beef roast (raw)
definition: A beef denver roast that is raw.
imported from: foodon.owl

beef shoulder clod
type: Class
subclass of: beef sub-primal cut
definition: A large muscle system which lies dorsal and posterior to the elbow joint, ventral and posterior to the ridge of the scapula (blade bone) and is anterior to the 6th rib.
imported from: foodon.owl

beef shoulder clod (raw)
type: Class
subclass of: beef shoulder clod
subclass of: beef sub-primal cut (raw)
definition: A raw beef shoulder clod.
imported from: foodon.owl

beef shoulder clod arm roast
type: Class
subclass of: beef retail cut
definition: The largest section of the shoulder clod that consist of the large muscle system of the thick end of the shoulder.
imported from: foodon.owl

beef shoulder clod arm roast (raw)
type: Class
subclass of: beef shoulder clod arm roast
subclass of: beef retail cut (raw)
definition: A raw beef shoulder clod arm roast.
imported from: foodon.owl

beef shoulder steak
type: Class
subclass of: beef steak
definition: A steak cut across the grain from the shoulder clod arm roast.
imported from: foodon.owl

beef shoulder steak (raw)
type: Class
subclass of: beef shoulder steak
subclass of: beef steak (raw)
definition: A raw beef shoulder steak.
imported from: foodon.owl

beef shoulder roast
type: Class
subclass of: beef roast
definition: A roast cut from the beef shoulder clod.
imported from: foodon.owl

beef shoulder roast (raw)
type: Class
subclass of: beef shoulder roast
subclass of: beef roast (raw)
definition: A raw beef shoulder roast.
imported from: foodon.owl

beef ranch steak
type: Class
subclass of: beef steak
definition: A steak cut across the grain from the shoulder clod arm roast similar to the shoulder steak. Visible connective tissue and associated lean must be removed to qualify as a Ranch Steak.
imported from: foodon.owl

beef ranch steak (raw)
type: Class
subclass of: beef ranch steak
subclass of: beef steak (raw)
definition: A raw beef ranch steak.
imported from: foodon.owl

beef top blade
type: Class
subclass of: beef retail cut
definition: The second most tender muscle in the animal that is derived from the shoulder clod. However, internal connective tissue should be removed to preserve that tenderness.
imported from: foodon.owl

beef top blade (raw)
type: Class
subclass of: beef top blade
subclass of: beef retail cut (raw)
definition: A raw beef top blade cut.
imported from: foodon.owl

beef top blade steak
type: Class
subclass of: beef steak
definition: A beef steak cut that is end-to-end from the whole top blade.
imported from: foodon.owl

beef top blade steak (raw)
type: Class
subclass of: beef top blade steak
subclass of: beef steak (raw)
definition: A raw beef top blade steak.
imported from: foodon.owl

beef flat iron steak
type: Class
subclass of: beef steak
definition: A steak cut from the top blade, where the cutting method removes internal connective tissue from the whole Top Blade.
imported from: foodon.owl

beef flat iron steak (raw)
type: Class
subclass of: beef flat iron steak
subclass of: beef steak (raw)
definition: A raw beef flat iron steak.
imported from: foodon.owl

beef chuck short rib
type: Class
subclass of: beef sub-primal cut
definition: A cut that is derived from the beef chuck and must include rib 2 through 5.
imported from: foodon.owl

beef chuck short rib (raw)
type: Class
subclass of: beef chuck short rib
subclass of: beef sub-primal cut (raw)
definition: A raw beef chuck short rib.
imported from: foodon.owl

beef chuck short rib (boneless)
type: Class
subclass of: beef chuck short rib
definition: A cut from beef chuck short rib that is an individual muscle and is boneless.
imported from: foodon.owl

beef chuck short rib (boneless, raw)
type: Class
subclass of: beef chuck short rib (raw)
subclass of: beef chuck short rib (boneless)
definition: A raw and boneless beef chuck short rib.
imported from: foodon.owl

beef square cut chuck
type: Class
subclass of: beef sub-primal cut
definition: A beef cut that is the portion of the forequarter after removal of the rib, shortplate, foreshank and brisket.
imported from: foodon.owl

beef square cut chuck (raw)
type: Class
subclass of: beef square cut chuck
subclass of: beef sub-primal cut (raw)
definition: A raw beef square cut chuck.
imported from: foodon.owl

beef 7-bone chuck steak
type: Class
subclass of: beef steak
definition: A beef steak cut that is identified by its 7-shaped bone. The 7-bone is made by cutting steaks across the scapula or blade bone.
imported from: foodon.owl

beef 7-bone chuck steak (raw)
type: Class
subclass of: beef 7-bone chuck steak
subclass of: beef steak (raw)
definition: A raw beef 7-bone chuck steak.
imported from: foodon.owl

beef 7-bone chuck roast
type: Class
subclass of: beef roast
definition: A beef roast cut that is identified by its 7-shaped bone. The 7-bone is made by cutting roasts across the scapula or blade bone.
imported from: foodon.owl

beef 7-bone chuck roast (raw)
type: Class
subclass of: beef 7-bone chuck roast
subclass of: beef roast (raw)
definition: A raw beef 7-bone chuck roast.
imported from: foodon.owl

beef blade chuck steak
type: Class
subclass of: beef steak
definition: A steak cut from the flat bone portion of the blade that comes from ribs 4 through 5.
imported from: foodon.owl

beef blade chuck steak (raw)
type: Class
subclass of: beef blade chuck steak
subclass of: beef steak (raw)
definition: A raw beef blade chuck steak.
imported from: foodon.owl

beef blade chuck roast
type: Class
subclass of: beef roast
definition: A roast cut from the flat bone portion of the blade that comes from ribs 4 through 5.
imported from: foodon.owl

beef blade chuck roast (raw)
type: Class
subclass of: beef blade chuck roast
subclass of: beef roast (raw)
definition: A raw beef blade chuck roast.
imported from: foodon.owl

beef chuck roast
type: Class
subclass of: beef roast
definition: A beef roast that comes from the center portion of the Chuck Roll.
imported from: foodon.owl

beef chuck roast (raw)
type: Class
subclass of: beef chuck roast
subclass of: beef roast (raw)
definition: A raw beef chuck roast.
imported from: foodon.owl

beef chuck steak
type: Class
subclass of: beef steak
definition: A beef steak that comes from the center portion of the Chuck Roll.
imported from: foodon.owl

beef chuck steak (raw)
type: Class
subclass of: beef chuck steak
subclass of: beef steak (raw)
definition: A raw beef chuck steak.
imported from: foodon.owl

beef cross-rib roast
type: Class
subclass of: beef roast
definition: A beef cut that is adjacent to the arm and includes ribs 2 through 5.
imported from: foodon.owl

beef cross-rib roast (raw)
type: Class
subclass of: beef cross-rib roast
subclass of: beef roast (raw)
definition: A raw beef cross-rib roast.
imported from: foodon.owl

beef chuck arm steak
type: Class
subclass of: beef steak
definition: A steak cut from the arm bone (humerus) of the upper forelimb.
imported from: foodon.owl

beef chuck arm steak (raw)
type: Class
subclass of: beef chuck arm steak
subclass of: beef steak (raw)
definition: A raw beef chuck arm steak.
imported from: foodon.owl

beef chuck arm roast
type: Class
subclass of: beef roast
definition: A roast cut from the arm bone (humerus) of the upper forelimb.
imported from: foodon.owl

beef chuck arm roast (raw)
type: Class
subclass of: beef chuck arm roast
subclass of: beef roast (raw)
definition: A raw beef chuck arm roast.
imported from: foodon.owl

beef chuck neck roast
type: Class
subclass of: beef roast
definition: A beef cut that is derived from the anterior end of the untrimmed chuck roll.
imported from: foodon.owl

beef chuck neck roast (raw)
type: Class
subclass of: beef chuck neck roast
subclass of: beef roast (raw)
definition: A raw beef chuck neck roast.
imported from: foodon.owl

beef chuck flap/edge roast
type: Class
subclass of: beef roast
definition: A roast cut is made during fabrication to square off the chuck roll.
imported from: foodon.owl

beef chuck flap/edge roast (raw)
type: Class
subclass of: beef chuck flap/edge roast
subclass of: beef roast (raw)
definition: A raw beef chuck flap/edge roast.
imported from: foodon.owl

beef loin (raw)
type: Class
subclass of: beef loin
subclass of: beef primal cut (raw)
subclass of: food (raw)
definition: A raw beef loin cut.
imported from: foodon.owl

beef short loin
type: Class
subclass of: beef sub-primal cut
imported from: foodon.owl

beef short loin (raw)
type: Class
subclass of: beef short loin
subclass of: beef sub-primal cut (raw)
definition: A raw beef short loin cut.
imported from: foodon.owl

beef T-bone steak (raw)
type: Class
subclass of: beef T-bone steak
subclass of: beef loin (raw)
subclass of: beef steak (raw)
definition: A raw beef T-bone steak.
imported from: foodon.owl

beef strip loin (bone-in)
type: Class
subclass of: beef retail cut
definition: A cut refers to the group of muscles that extends the length of the Top Loin adjacent to the spine bone and on top of the finger bone.
imported from: foodon.owl

beef strip loin (bone-in, raw)
type: Class
subclass of: beef strip loin (bone-in)
subclass of: beef retail cut (raw)
definition: A raw beef strip loin that contains bone.
imported from: foodon.owl

beef strip loin (boneless)
type: Class
subclass of: beef sub-primal cut
definition: A group of muscles that extends the length of the top loin adjacent to the spine bone and on top of the finger bone.
imported from: foodon.owl

beef strip loin (boneless, raw)
type: Class
subclass of: beef strip loin (boneless)
subclass of: beef sub-primal cut (raw)
definition: A raw and boneless beef strip loin.
imported from: foodon.owl

beef strip roast (boneless)
type: Class
subclass of: beef roast
definition: A roast cut that comes from boneless beef strip loin.
imported from: foodon.owl

beef strip roast (boneless, raw)
type: Class
subclass of: beef strip roast (boneless)
subclass of: beef roast (raw)
definition: A raw beef strip roast.
imported from: foodon.owl

beef strip steak (boneless)
type: Class
subclass of: beef steak
definition: A cut that comes from the top loin or strip loin into uniform steak.
imported from: foodon.owl

beef strip steak (boneless, raw)
type: Class
subclass of: beef strip steak (boneless)
subclass of: beef steak (raw)
definition: A raw and boneless beef strip steak.
imported from: foodon.owl

beef strip steak (bone-in)
type: Class
subclass of: beef steak
definition: A beef strip steak that contains bone material.
imported from: foodon.owl

beef strip steak (bone-in, raw)
type: Class
subclass of: beef strip steak (bone-in)
subclass of: beef steak (raw)
definition: A raw beef strip steak that contains bone material.
imported from: foodon.owl

beef strip petite roast
type: Class
subclass of: beef roast
definition: A smaller roasting option than Strip Roast.
imported from: foodon.owl

beef strip petite roast (raw)
type: Class
subclass of: beef strip petite roast
subclass of: beef roast (raw)
definition: A raw beef strip petite roast.
imported from: foodon.owl

beef strip fillet
type: Class
subclass of: beef retail cut
definition: A thick cut but smaller diameter than beef strip steak.
imported from: foodon.owl

beef strip fillet (raw)
type: Class
subclass of: beef strip fillet
subclass of: beef retail cut (raw)
definition: A raw beef strip fillet.
imported from: foodon.owl

beef tenderloin (bone-in)
type: Class
subclass of: beef sub-primal cut
definition: A meat cut that is an inside muscle of the beef loin.
imported from: foodon.owl

beef tenderloin (bone-in, raw)
type: Class
subclass of: beef tenderloin (bone-in)
subclass of: beef sub-primal cut (raw)
definition: A raw beef tenderloin that contains bone material.
imported from: foodon.owl

beef tenderloin steak (bone-in)
type: Class
subclass of: beef steak
definition: A raw beef tenderloin steak.
imported from: foodon.owl

beef tenderloin steak (bone-in, raw)
type: Class
subclass of: beef tenderloin steak (bone-in)
subclass of: beef tenderloin steak (raw)
definition: A raw beef tenderloin steak.
imported from: foodon.owl

beef tenderloin (boneless)
type: Class
subclass of: beef sub-primal cut
definition: A cut that is a long, narrow, and lean muscle located within the loin, and is the most tender cut of beef.
imported from: foodon.owl

beef tenderloin (boneless, raw)
type: Class
subclass of: beef tenderloin (boneless)
subclass of: beef sub-primal cut (raw)
definition: A raw and boneless beef tenderloin.
imported from: foodon.owl

beef tenderloin roast
type: Class
subclass of: beef roast
definition: A roast cut from the larger tenderloin.
imported from: foodon.owl

beef tenderloin roast (raw)
type: Class
subclass of: beef tenderloin roast
subclass of: beef roast (raw)
definition: A raw beef tenderloin roast.
imported from: foodon.owl

beef tenderloin steak
type: Class
subclass of: beef steak
definition: A boneless steak cut from the tenderloin.
imported from: foodon.owl

beef tenderloin steak (raw)
type: Class
subclass of: beef tenderloin steak
subclass of: beef steak (raw)
definition: A raw beef tenderloin steak.
imported from: foodon.owl

beef sirloin
type: Class
subclass of: beef primal cut
definition: A beef primal cut that is contained within the larger cut 'beef loin'. It is located between the short loin and the round and includes the hip section and ends at the socket of the pelvis.
imported from: foodon.owl

beef sirloin (raw)
type: Class
subclass of: beef sirloin
subclass of: beef primal cut (raw)
definition: A raw beef sirloin cut.
imported from: foodon.owl

beef top sirloin butt
type: Class
subclass of: beef sub-primal cut
definition: A beef cut that is located behind the beef short loin on the top back end of the animal.
imported from: foodon.owl

beef top sirloin butt (raw)
type: Class
subclass of: beef top sirloin butt
subclass of: beef sub-primal cut (raw)
definition: A raw beef top sirloin butt.
imported from: foodon.owl

beef top sirloin steak
type: Class
subclass of: beef steak
definition: A steak cut from the beef top sirloin butt that is flavourful and juicy.
imported from: foodon.owl

beef top sirloin steak (raw)
type: Class
subclass of: beef top sirloin steak
subclass of: beef steak (raw)
definition: A raw beef top sirloin steak.
imported from: foodon.owl

beef top sirloin roast
type: Class
subclass of: beef roast
definition: A roast cut from the beef top sirloin.
imported from: foodon.owl

beef top sirloin roast (raw)
type: Class
subclass of: beef top sirloin roast
subclass of: beef roast (raw)
definition: A raw beef top sirloin roast.
imported from: foodon.owl

beef top sirloin petite roast
type: Class
subclass of: beef roast
definition: A roast cut that is a smaller version of the larger {animal top sirloin roast
imported from: foodon.owl

beef top sirloin petite roast (raw)
type: Class
subclass of: beef top sirloin petite roast
subclass of: beef roast (raw)
definition: A raw beef top sirloin petite roast.
imported from: foodon.owl

beef top sirloin fillet
type: Class
subclass of: beef retail cut
definition: A cut that is portioned from a top sirloin steak.
imported from: foodon.owl

beef top sirloin fillet (raw)
type: Class
subclass of: beef top sirloin fillet
subclass of: beef retail cut (raw)
definition: A raw beef top sirloin fillet.
imported from: foodon.owl

beef culotte steak
type: Class
subclass of: beef top sirloin steak
definition: A beef steak cut from the triangle-shaped muscle that caps or covers the top sirloin.
imported from: foodon.owl

beef culotte steak (raw)
type: Class
subclass of: beef top sirloin steak (raw)
subclass of: beef culotte steak
definition: A raw beef culotte steak.
imported from: foodon.owl

beef culotte roast
type: Class
subclass of: beef roast
definition: A beef roast cut from the triangle-shaped muscle that caps or covers the top sirloin.
imported from: foodon.owl

beef culotte roast (raw)
type: Class
subclass of: beef culotte roast
subclass of: beef roast (raw)
definition: A raw beef culotte roast.
imported from: foodon.owl

beef bottom sirloin butt
type: Class
subclass of: beef sub-primal cut
definition: A beef sub-primal cut that is the lower portion of the sirloin section of the loin that contains three muscles that vary in tenderness.
imported from: foodon.owl

beef bottom sirloin butt (raw)
type: Class
subclass of: beef bottom sirloin butt
subclass of: beef sub-primal cut (raw)
definition: A raw beef bottom sirloin butt.
imported from: foodon.owl

beef tri-tip roast
type: Class
subclass of: beef roast
definition: A beef roast cut that is triangular shaped and is located at the tip of the sirloin.
imported from: foodon.owl

beef tri-tip roast (raw)
type: Class
subclass of: beef tri-tip roast
subclass of: beef roast (raw)
definition: A raw beef tri-tip roast.
imported from: foodon.owl

beef tri-tip steak
type: Class
subclass of: beef steak
definition: A steak cut from the beef tri-tip section.
imported from: foodon.owl

beef tri-tip steak (raw)
type: Class
subclass of: beef tri-tip steak
subclass of: beef steak (raw)
definition: A raw beef tri-tip steak.
imported from: foodon.owl

beef petite sirloin steak
type: Class
subclass of: beef steak
definition: A small-sized sirloin steak.
imported from: foodon.owl

beef petite sirloin steak (raw)
type: Class
subclass of: beef petite sirloin steak
subclass of: beef steak (raw)
definition: A raw beef petite sirloin roast.
imported from: foodon.owl

beef petite sirloin roast
type: Class
subclass of: beef roast
definition: A small roast section of the bottom sirloin opposite the sirloin tip in the beef round.
imported from: foodon.owl

beef petite sirloin roast (raw)
type: Class
subclass of: beef petite sirloin roast
subclass of: beef roast (raw)
definition: A raw beef petite sirloin roast.
imported from: foodon.owl

beef sirloin bavette flap
type: Class
subclass of: beef retail cut
definition: A boneless cut with a hearty texture that’s a good source for fajita meat.
imported from: foodon.owl

beef sirloin bavette flap (raw)
type: Class
subclass of: beef sirloin bavette flap
subclass of: beef retail cut (raw)
definition: A raw beef sirloin bavette flap cut.
imported from: foodon.owl

beef sirloin bavette steak
type: Class
subclass of: beef steak
definition: A steak cut from the beef sirloin bavette flap.
imported from: foodon.owl

beef sirloin bavette steak (raw)
type: Class
subclass of: beef sirloin bavette steak
subclass of: beef steak (raw)
definition: A raw beef sirloin bavette steak.
imported from: foodon.owl

beef flank
type: Class
subclass of: beef primal cut
definition: A beef cut that is located below the loin primal.
imported from: foodon.owl

beef flank (raw)
type: Class
subclass of: beef flank
subclass of: beef primal cut (raw)
definition: A raw beef flank.
imported from: foodon.owl

beef flank steak
type: Class
subclass of: beef steak
definition: A steak cut from the beef flank.
imported from: foodon.owl

beef flank steak (raw)
type: Class
subclass of: beef flank steak
subclass of: beef steak (raw)
definition: A raw beef flank steak.
imported from: foodon.owl

beef short plate
type: Class
subclass of: beef primal cut
definition: A beef cut that is located on the underside of the animal below the rib primal. The end of the sixth through the twelfth rib is contained within the plate primal cut.
imported from: foodon.owl

beef short plate (raw)
type: Class
subclass of: beef short plate
subclass of: beef primal cut (raw)
definition: A raw beef short plate cut.
imported from: foodon.owl

beef inside skirt steak
type: Class
subclass of: beef steak
definition: A beef steak that is a trimmed, boneless portion of the diaphragm muscle attached to the 6th through 12th rib on the underside of the short plate.
imported from: foodon.owl

beef inside skirt steak (raw)
type: Class
subclass of: beef inside skirt steak
subclass of: beef steak (raw)
definition: A raw beef outside skirt steak.
imported from: foodon.owl

beef outside skirt steak
type: Class
subclass of: beef steak
definition: A beef steak that is a trimmed, boneless portion of the diaphragm muscle attached to the 6th through 12th rib on the underside of the short plate.
imported from: foodon.owl

beef outside skirt steak (raw)
type: Class
subclass of: beef outside skirt steak
subclass of: beef steak (raw)
definition: A raw beef outside skirt steak.
imported from: foodon.owl

beef hanger steak
type: Class
subclass of: beef steak
definition: A beef steak that is a thick strip of meat located on the underside of the carcass and hangs between the last rib and the loin.
imported from: foodon.owl

beef hanger steak (raw)
type: Class
subclass of: beef hanger steak
subclass of: beef steak (raw)
definition: A raw beef hanger steak.
imported from: foodon.owl

beef plate short rib
type: Class
subclass of: beef retail cut
definition: A beef cut that is usually taken from the flat end of ribs 6 through 9.
imported from: foodon.owl

beef plate short rib (raw)
type: Class
subclass of: beef plate short rib
subclass of: beef retail cut (raw)
definition: A raw beef plate short rib.
imported from: foodon.owl

beef brisket
type: Class
subclass of: beef primal cut
subclass of: brisket
definition: A beef cut that is located on the underside of the animal, below the chuck primal, which extends from between the forelegs to the plate.
imported from: foodon.owl

beef brisket (raw)
type: Class
subclass of: beef brisket
subclass of: beef primal cut (raw)
definition: A raw beef brisket.
imported from: foodon.owl

beef brisket flat half
type: Class
subclass of: beef sub-primal cut
definition: A beef cut that is the leaner half of the whole brisket.
imported from: foodon.owl

beef brisket flat half (raw)
type: Class
subclass of: beef brisket flat half
subclass of: beef sub-primal cut (raw)
definition: A raw beef brisket flat half cut.
imported from: foodon.owl

beef brisket flat half (boneless)
type: Class
subclass of: beef brisket flat half
subclass of: piece of beef (boneless)
definition: A boneless beef brisket flat half cut.
imported from: foodon.owl

beef brisket flat half (boneless, raw)
type: Class
subclass of: beef brisket flat half (raw)
subclass of: beef brisket flat half (boneless)
subclass of: piece of animal meat (boneless, raw)
definition: A raw and boneless beef brisket flat half cut.
imported from: foodon.owl

beef brisket point half
type: Class
subclass of: beef sub-primal cut
definition: A beef sub-primal cut that is the less lean half of the whole Brisket.
imported from: foodon.owl

beef brisket point half (raw)
type: Class
subclass of: beef brisket point half
subclass of: beef sub-primal cut (raw)
definition: A raw beef brisket point half.
imported from: foodon.owl

beef shank
type: Class
subclass of: beef primal cut
definition: A portion of the beef leg, which is used extensively for movement.
imported from: foodon.owl

beef shank (raw)
type: Class
subclass of: beef shank
subclass of: beef primal cut (raw)
definition: A raw beef shank.
imported from: foodon.owl

beef shank cross-cut
type: Class
subclass of: beef sub-primal cut
definition: A cross-section of beef leg.
imported from: foodon.owl

beef shank cross-cut (raw)
type: Class
subclass of: beef shank cross-cut
subclass of: beef sub-primal cut (raw)
definition: A raw beef shank cross-cut.
imported from: foodon.owl

beef shank center cut
type: Class
subclass of: beef sub-primal cut
definition: A center-cut cross-section of a beef leg
imported from: foodon.owl

beef shank center cut (raw)
type: Class
subclass of: beef shank center cut
subclass of: beef sub-primal cut (raw)
definition: A raw beef shank center-cut.
imported from: foodon.owl

beef rib
type: Class
subclass of: beef primal cut
definition: A beef cut that is situated under the front section of the backbone and used primarily for support.
imported from: foodon.owl

beef rib (raw)
type: Class
subclass of: beef rib
subclass of: beef primal cut (raw)
definition: A raw beef rib cut.
imported from: foodon.owl

beef ribeye roll (lip on)
type: Class
subclass of: beef sub-primal cut
definition: A boneless cut from the rib primal.
imported from: foodon.owl

beef ribeye roll (lip on, raw)
type: Class
subclass of: beef ribeye roll (lip on)
subclass of: beef sub-primal cut (raw)
definition: A raw beef ribeye roll cut.
imported from: foodon.owl

beef ribeye roast
type: Class
subclass of: beef roast
definition: A beef rib roast that has had the sixth through the twelfth rib bones removed leaving just the rib-eye muscle.
imported from: foodon.owl

beef ribeye roast (raw)
type: Class
subclass of: beef ribeye roast
subclass of: beef roast (raw)
definition: A raw beef ribeye roast.
imported from: foodon.owl

beef ribeye steak
type: Class
subclass of: beef steak
definition: A beef steak that is a cut from the rib-eye roast.
imported from: foodon.owl

beef ribeye steak (raw)
type: Class
subclass of: beef ribeye steak
subclass of: beef steak (raw)
definition: A raw beef ribeye steak.
imported from: foodon.owl

beef ribeye roll
type: Class
subclass of: beef retail cut
definition: A meat cut that is located above the short rib in the rib primal between the Chuck and Loin primal.
imported from: foodon.owl

beef ribeye roll (raw)
type: Class
subclass of: beef ribeye roll
subclass of: beef retail cut (raw)
definition: A raw beef ribeye roll cut.
imported from: foodon.owl

beef ribeye petite roast
type: Class
subclass of: beef roast
definition: A smaller alternative to the ribeye roast.
imported from: foodon.owl

beef ribeye petite roast (raw)
type: Class
subclass of: beef ribeye petite roast
subclass of: beef roast (raw)
definition: A raw beef ribeye petite roast.
imported from: foodon.owl

beef ribeye fillet
type: Class
subclass of: beef steak
definition: A smaller ribeye steak
imported from: foodon.owl

beef ribeye fillet (raw)
type: Class
subclass of: beef ribeye fillet
subclass of: beef steak (raw)
definition: A raw beef ribeye fillet.
imported from: foodon.owl

beef ribeye cap steak
type: Class
subclass of: beef steak
definition: A steak cut that is portioned from the ribeye cap roll by slicing at a right angle to the grain or muscle fibre direction.
imported from: foodon.owl

beef ribeye cap steak (raw)
type: Class
subclass of: beef ribeye cap steak
subclass of: beef steak (raw)
definition: A raw beef ribeye cap steak.
imported from: foodon.owl

beef ribeye cap roll
type: Class
subclass of: beef retail cut
definition: A cut that is portioned by slicing at a right angle to the grain or direction of muscle fibre.
imported from: foodon.owl

beef ribeye cap roll (raw)
type: Class
subclass of: beef ribeye cap roll
subclass of: beef retail cut (raw)
definition: A beef ribeye cap roll cut that is raw.
imported from: foodon.owl

beef rib sub-primal
type: Class
subclass of: beef sub-primal cut
definition: A beef cut that is situated under the front section of the backbone.
imported from: foodon.owl

beef rib sub-primal (raw)
type: Class
subclass of: beef rib sub-primal
subclass of: beef sub-primal cut (raw)
definition: A raw beef rib sub-primal cut.
imported from: foodon.owl

beef short rib (raw)
type: Class
subclass of: beef short rib
subclass of: beef retail cut (raw)
subclass of: food (raw)
definition: A raw beef short rib cut.
imported from: foodon.owl

beef back rib
type: Class
subclass of: beef retail cut
definition: A beef cut that is portioned by the number of rib bones.
imported from: foodon.owl

beef back rib (raw)
type: Class
subclass of: beef back rib
subclass of: beef retail cut (raw)
definition: A raw beef back rib cut.
imported from: foodon.owl

beef rib steak
type: Class
subclass of: beef steak
definition: A beef steak that is a cut from the rib roast.
imported from: foodon.owl

beef rib steak (raw)
type: Class
subclass of: beef rib steak
subclass of: beef steak (raw)
definition: A raw beef rib steak.
imported from: foodon.owl

beef prime rib roast (raw)
type: Class
subclass of: beef prime rib roast
subclass of: beef roast (raw)
subclass of: food (raw)
definition: A raw beef prime rib roast.
imported from: foodon.owl

beef small end rib roast
type: Class
subclass of: beef roast
definition: A rib roast that includes ribs 9 or 10 through 12 and is next to the loin.
imported from: foodon.owl

beef small end rib roast (raw)
type: Class
subclass of: beef small end rib roast
subclass of: beef roast (raw)
definition: A raw beef small end rib roast.
imported from: foodon.owl

beef large end rib roast
type: Class
subclass of: beef roast
definition: A rib roast that includes ribs 6 through 8 or 9 and is next to the chuck.
imported from: foodon.owl

beef large end rib roast (raw)
type: Class
subclass of: beef large end rib roast
subclass of: beef roast (raw)
definition: A raw beef large end rib roast.
imported from: foodon.owl

beef cowboy steak
type: Class
subclass of: beef steak
definition: A tender, bone-in steak with a frenched rib presentation.
imported from: foodon.owl

beef cowboy steak (raw)
type: Class
subclass of: beef cowboy steak
subclass of: beef steak (raw)
definition: A raw beef cowboy steak.
imported from: foodon.owl

beef tomahawk steak
type: Class
subclass of: beef steak
definition: A tender bone-in steak from the rib with a long bone and marbling that adds flavour.
imported from: foodon.owl

beef tomahawk steak (raw)
type: Class
subclass of: beef tomahawk steak
subclass of: beef steak (raw)
definition: A raw beef tomahawk steak.
imported from: foodon.owl

beef rib finger
type: Class
subclass of: beef retail cut
definition: A thin strip of beef cut from between individual ribs in the rib primal.
imported from: foodon.owl

beef rib finger (raw)
type: Class
subclass of: beef rib finger
subclass of: beef retail cut (raw)
definition: A raw beef rib finger cut.
imported from: foodon.owl

lamb shoulder
type: Class
subclass of: vertebrate animal food product
subclass of: lamb primal cut
definition: A lamb primal cut that is the upper foreleg extending from elbow to blade bone.
imported from: foodon.owl

lamb shoulder (raw)
type: Class
subclass of: lamb shoulder
subclass of: piece of animal (raw)
subclass of: piece of lamb (raw)
definition: A raw lamb shoulder cut.
imported from: foodon.owl

lamb shoulder blade
type: Class
subclass of: lamb sub-primal cut
definition: A whole cut from the Shoulder. The cut location is the full length of the Scapula or blade bone and includes the muscle groups above and below the Scapula.
imported from: foodon.owl

lamb shoulder blade (raw)
type: Class
subclass of: lamb shoulder blade
subclass of: piece of animal (raw)
subclass of: piece of lamb (raw)
definition: A raw lamb shoulder blade cut.
imported from: foodon.owl

lamb shoulder blade roast
type: Class
subclass of: lamb roast
definition: A roast that is derived from the blade portion of the lamb shoulder primal. The cut location is from either the flat bone or the center portion of the Blade
imported from: foodon.owl

lamb shoulder blade roast (raw)
type: Class
subclass of: lamb shoulder blade roast
subclass of: lamb roast (raw)
definition: A raw lamb shoulder blade roast.
imported from: foodon.owl

lamb shoulder blade chop
type: Class
subclass of: lamb chop
definition: A lamb chop that is derived from the blade portion of the lamb shoulder primal.
imported from: foodon.owl

lamb shoulder blade chop (raw)
type: Class
subclass of: lamb shoulder blade chop
subclass of: lamb chop (raw)
definition: A raw lamb shoulder blade chop.
imported from: foodon.owl

lamb shoulder arm
type: Class
subclass of: lamb sub-primal cut
definition: A whole cut from the shoulder. The shoulder arm consists of the muscle groups that extend from the elbow joint to the shoulder joint and includes the first three ribs.
imported from: foodon.owl

lamb shoulder arm (raw)
type: Class
subclass of: lamb shoulder arm
subclass of: piece of animal (raw)
subclass of: piece of lamb (raw)
definition: A raw lamb shoulder arm cut.
imported from: foodon.owl

lamb shoulder arm roast
type: Class
subclass of: lamb roast
definition: A roast that is derived from the arm portion of the Shoulder primal. Arm Roasts come from the shaft of the Humerus and includes the surrounding muscles that extends from the Elbow joint to the Shoulder joint.
imported from: foodon.owl

lamb shoulder arm roast (raw)
type: Class
subclass of: lamb shoulder arm roast
subclass of: lamb roast (raw)
definition: A raw lamb shoulder arm roast.
imported from: foodon.owl

lamb shoulder arm chop
type: Class
subclass of: lamb chop
definition: A lamb chop that is derived from the arm portion of the lamb shoulder primal.
imported from: foodon.owl

lamb shoulder arm chop (raw)
type: Class
subclass of: lamb shoulder arm chop
subclass of: lamb chop (raw)
definition: A raw lamb shoulder arm chop.
imported from: foodon.owl

lamb leg
type: Class
subclass of: vertebrate animal food product
subclass of: lamb primal cut
definition: A primal cut that comes from the area which extends from groin to ankle.
imported from: foodon.owl

lamb leg (raw)
type: Class
subclass of: lamb leg
subclass of: piece of animal (raw)
subclass of: piece of lamb (raw)
definition: A raw lamb leg.
imported from: foodon.owl

lamb leg (boneless)
type: Class
subclass of: lamb leg
definition: A boneless lamb leg.
imported from: foodon.owl

lamb shank half
type: Class
subclass of: lamb sub-primal cut
definition: A leg half that is derived from a whole leg. The anatomical location is the “half” that comes from the shank or lower section of the Leg. The half includes the center section with muscles from the bottom, eye, tip, and top.
imported from: foodon.owl

lamb shank half (raw)
type: Class
subclass of: lamb shank half
definition: A raw lamb shank half cut.
imported from: foodon.owl

lamb sirloin half
type: Class
subclass of: lamb sub-primal cut
definition: A lamb leg half that is derived from a whole leg. The anatomical location is the “Half” that comes from the Pelvic region of the Leg known as the Sirloin. The half includes the center section with muscles from the bottom, eye, tip, and top.
imported from: foodon.owl

lamb sirloin half (raw)
type: Class
subclass of: lamb sirloin half
subclass of: piece of animal (raw)
subclass of: piece of lamb (raw)
definition: A raw lamb sirloin half cut.
imported from: foodon.owl

lamb sirloin half (shank off, semi-boneless)
type: Class
subclass of: lamb sirloin half
definition: A lamb sirloin half that has bones removed except for the femur and humerus bone and the designated shank (i.e. hindshank, or foreshank) is removed.
imported from: foodon.owl

lamb sirloin half (shank off, semi-boneless, raw)
type: Class
subclass of: lamb sirloin half (raw)
subclass of: lamb sirloin half (shank off, semi-boneless)
definition: A cut from lamb sirloin half (shank off, semi-boneless) that is raw.
imported from: foodon.owl

lamb leg bottom
type: Class
subclass of: lamb sub-primal cut
definition: A boneless cut that comes from the outside and sirloin tip portion of any boneless leg cut.
imported from: foodon.owl

lamb leg top
type: Class
subclass of: lamb sub-primal cut
definition: A boneless cut that comes from the inside portion of any boneless leg cut and shall consist of the semimembranosus, adductor and firmly attached muscles. The inside is separated from the bottom and knuckle portion along the natural seams.
imported from: foodon.owl

lamb sirloin chop
type: Class
subclass of: lamb chop
definition: A lamb chop that derives from the sirloin portion of the leg. The cut location extends from the anterior end of the Pelvic bone to the hip socket.
imported from: foodon.owl

lamb sirloin chop (raw)
type: Class
subclass of: lamb sirloin chop
subclass of: lamb chop (raw)
definition: A raw lamb sirloin chop.
imported from: foodon.owl

lamb sirloin chop (boneless)
type: Class
subclass of: lamb sirloin chop
definition: A boneless lamb sirloin chop.
imported from: foodon.owl

lamb sirloin chop (boneless, raw)
type: Class
subclass of: lamb sirloin chop (raw)
subclass of: lamb sirloin chop (boneless)
definition: A raw and boneless lamb sirloin chop.
imported from: foodon.owl

leg of lamb
type: Class
subclass of: lamb sub-primal cut
definition: A whole rear leg containing the eye, bottom, sirloin, sirloin tip and top.
imported from: foodon.owl

leg of lamb (raw)
type: Class
subclass of: leg of lamb
subclass of: piece of animal (raw)
subclass of: piece of lamb (raw)
definition: A raw leg of lamb.
imported from: foodon.owl

leg of lamb center cut
type: Class
subclass of: lamb roast
definition: A leg of lamb that has the shank and sirloin removed leaving only the “center” section of the leg thus the name “center cut.”
imported from: foodon.owl

leg of lamb center cut (raw)
type: Class
subclass of: leg of lamb center cut
subclass of: lamb roast (raw)
definition: A raw leg of lamb center cut.
imported from: foodon.owl

lamb rib
type: Class
subclass of: vertebrate animal food product
subclass of: lamb primal cut
definition: A lamb primal cut that is between the shoulder and loin.
imported from: foodon.owl

lamb rib (raw)
type: Class
subclass of: lamb rib
subclass of: piece of animal (raw)
subclass of: piece of lamb (raw)
definition: A raw lamb rib.
imported from: foodon.owl

lamb breast
type: Class
subclass of: vertebrate animal food product
subclass of: lamb primal cut
definition: A lamb minor primal cut that is the lower chest cavity underneath the rack that includes ribs 5-8.
imported from: foodon.owl

lamb foreshank
type: Class
subclass of: vertebrate animal food product
subclass of: lamb sub-primal cut
definition: A minor lamb primal cut that is meat lower shank from front leg with no hock bones.
imported from: foodon.owl

lamb foreshank (raw)
type: Class
subclass of: lamb foreshank
subclass of: piece of animal (raw)
subclass of: piece of lamb (raw)
definition: A raw lamb foreshank.
imported from: foodon.owl

lamb loin
type: Class
subclass of: vertebrate animal food product
subclass of: lamb primal cut
definition: A lamb cut that comes from the anatomical body location on either side of the spine that is located posterior to the Rack and anterior to the Sirloin or hip.
imported from: foodon.owl

lamb loin (raw)
type: Class
subclass of: lamb loin
subclass of: piece of animal (raw)
subclass of: piece of lamb (raw)
definition: A raw lamb loin cut.
imported from: foodon.owl

lamb tenderloin
type: Class
subclass of: lamb sub-primal cut
definition: A whole cut that is derived from the short loin or any loin item that includes the sirloin. Because of its anatomical location, the tenderloin is the least exercised muscle in the carcass thus the name “Tender” Loin. The cut location is from underneath the finger bones in the short loin and the hipbone in the sirloin.
imported from: foodon.owl

lamb tenderloin (raw)
type: Class
subclass of: lamb tenderloin
definition: A raw lamb tenderloin cut.
imported from: foodon.owl

pork belly
type: Class
subclass of: pork primal cut
definition: A boneless and fatty cut from the belly of a pig.
imported from: foodon.owl

pork belly (raw)
type: Class
subclass of: pork belly
subclass of: piece of pig (raw)
definition: A raw pork belly.
imported from: foodon.owl

pork leg
type: Class
subclass of: pork primal cut
definition: A primal skeletal area of a pig that extends from groin to ankle.
imported from: foodon.owl

pork leg (raw)
type: Class
subclass of: pork leg
subclass of: piece of pig (raw)
definition: A raw pork leg.
imported from: foodon.owl

pork leg sirloin half
type: Class
subclass of: pork sub-primal cut
definition: A leg half that is derived from a whole pork leg. The anatomical location is the “Half” that comes from the Rump or Pelvic region of the Leg.
imported from: foodon.owl

pork leg sirloin half (raw)
type: Class
subclass of: pork leg sirloin half
subclass of: piece of pig (raw)
definition: A raw pork leg sirloin half cut.
imported from: foodon.owl

pork leg shank half
type: Class
subclass of: pork sub-primal cut
definition: A leg half that is derived from a whole pork leg. The anatomical location is the “Half” that comes from the Shank or lower section of the Leg
imported from: foodon.owl

pork leg shank half (raw)
type: Class
subclass of: pork leg shank half
subclass of: piece of pig (raw)
definition: A raw pork leg shank half cut.
imported from: foodon.owl

pork loin (raw)
type: Class
subclass of: pork loin
subclass of: piece of pig (raw)
definition: A raw pork loin cut.
imported from: foodon.owl

pork loin blade chop
type: Class
subclass of: pork chop
definition: Pork loin chop that is derived from the blade end of the pork loin and must include the blade bone/cartilage.
imported from: foodon.owl

pork loin blade chop (raw)
type: Class
subclass of: pork loin blade chop
subclass of: pork chop (raw)
definition: A raw pork loin blade chop.
imported from: foodon.owl

pork loin blade roast
type: Class
subclass of: pork roast
definition: A roast derived from the loin blade.
imported from: foodon.owl

pork loin blade roast (raw)
type: Class
subclass of: pork loin blade roast
subclass of: pork roast (raw)
definition: A raw pork loin blade roast.
imported from: foodon.owl

porterhouse chop
type: Class
subclass of: pork chop
definition: A pork loin chop from the center cut loin. The cut location is adjacent to but after the T-Bone chop and before the Sirloin portion on the Loin.
imported from: foodon.owl

porterhouse chop (raw)
type: Class
subclass of: porterhouse chop
subclass of: pork chop (raw)
definition: A raw porterhouse chop.
imported from: foodon.owl

ribeye chop
type: Class
subclass of: pork chop
definition: A pork loin chop that is derived from the center cut rib section of the loin.
imported from: foodon.owl

ribeye chop (raw)
type: Class
subclass of: ribeye chop
subclass of: pork chop (raw)
definition: A raw ribeye chop.
imported from: foodon.owl

ribeye roast
type: Class
subclass of: pork roast
definition: A roast that is derived from the center cut rib section of the loin.
imported from: foodon.owl

ribeye roast (raw)
type: Class
subclass of: ribeye roast
subclass of: pork roast (raw)
definition: A raw ribeye roast.
imported from: foodon.owl

pork sirloin chop
type: Class
subclass of: pork chop
definition: A pork chop that is derived from the whole loin. The Sirloin is the last 5 to 7 inches of the posterior end of the Loin. Sirloin Chop comes after but is adjacent to, the posterior end of the center-cut loin.
imported from: foodon.owl

pork sirloin chop (raw)
type: Class
subclass of: pork sirloin chop
subclass of: pork chop (raw)
definition: A raw pork sirloin chop.
imported from: foodon.owl

pork sirloin chop (boneless)
type: Class
subclass of: pork sirloin chop
definition: A pork chop that is derived from boneless sirloin.
imported from: foodon.owl

pork sirloin chop (boneless, raw)
type: Class
subclass of: pork sirloin chop (raw)
subclass of: pork sirloin chop (boneless)
definition: A raw and boneless pork sirloin chop.
imported from: foodon.owl

pork sirloin roast
type: Class
subclass of: pork roast
definition: A pork roast that is derived from the whole loin. The Sirloin is the last 5 to 7 inches of the posterior end of the Loin. The Sirloin Roast comes after but is adjacent to the posterior end of the Center Cut Loin.
imported from: foodon.owl

pork sirloin roast (raw)
type: Class
subclass of: pork sirloin roast
subclass of: pork roast (raw)
definition: A raw pork sirloin roast.
imported from: foodon.owl

pork tenderloin
type: Class
subclass of: pork sub-primal cut
definition: The whole tenderloin. Because of its anatomical location, the tenderloin is the least exercised muscle in the carcass, thus the name “tender” loin. The tenderloin is located underneath the Finger bones and the Hipbone in the Loin.
imported from: foodon.owl

New York chop (boneless)
type: Class
subclass of: pork chop
definition: A boneless pork chop that is derived from the center-cut top loin.
imported from: foodon.owl

New York chop (boneless, raw)
type: Class
subclass of: New York chop (boneless)
subclass of: pork chop (raw)
definition: A raw and boneless New York chop.
imported from: foodon.owl

New York roast (boneless)
type: Class
subclass of: pork roast
definition: A boneless roast that is derived from the center-cut top loin.
imported from: foodon.owl

New York roast (boneless, raw)
type: Class
subclass of: New York roast (boneless)
subclass of: pork roast (raw)
definition: A raw New York roast.
imported from: foodon.owl

pork loin country-style ribs
type: Class
subclass of: pork retail cut
definition: A meat cut that is derived from the blade end of a pork loin and must include not less than three (3) or more than six (6) ribs.
imported from: foodon.owl

pork loin country-style ribs (raw)
type: Class
subclass of: pork loin country-style ribs
subclass of: pork retail cut (raw)
definition: Raw pork loin country-style ribs.
imported from: foodon.owl

pork loin country-style ribs (boneless)
type: Class
subclass of: pork loin country-style ribs
definition: Boneless pork loin country-style ribs.
imported from: foodon.owl

pork loin country-style ribs (boneless, raw)
type: Class
subclass of: pork loin country-style ribs (raw)
subclass of: pork loin country-style ribs (boneless)
definition: A meat cut that is derived from the boneless blade end of the pork loin.
imported from: foodon.owl

pork loin back ribs
type: Class
subclass of: pork sub-primal cut
definition: Back Ribs that are derived from the pork loin.
imported from: foodon.owl

pork loin back ribs (raw)
type: Class
subclass of: pork loin back ribs
subclass of: piece of pig (raw)
definition: Raw pork loin back ribs.
imported from: foodon.owl

pork leg center slice
type: Class
subclass of: pork sub-primal cut
definition: A slice that is derived from a whole pork leg.
imported from: foodon.owl

pork leg center slice (raw)
type: Class
subclass of: pork leg center slice
subclass of: piece of pig (raw)
definition: A raw pork leg center slice that is raw.
imported from: foodon.owl

pork leg center slice (cured, raw)
type: Class
subclass of: pork leg center slice (raw)
definition: A raw and cured pork leg center slice.
imported from: foodon.owl

pork spareribs
type: Class
subclass of: pork belly
subclass of: side (meat cut)
definition: Ribs derived from the pork belly. Spareribs are the longer rib bones and intercostal meat located below the back ribs. They begin with the second rib and extend downward to the sternum and costal cartilage, spanning the length of the Rib cage.
imported from: foodon.owl

pork spareribs (raw)
type: Class
subclass of: pork belly (raw)
subclass of: pork spareribs
definition: Raw pork spareribs.
imported from: foodon.owl

pork shoulder
type: Class
subclass of: pork primal cut
definition: Upper foreleg of a pig that extends from elbow to blade bone.
imported from: foodon.owl

pork shoulder (boneless)
type: Class
subclass of: pork shoulder
definition: A boneless pork shoulder.
imported from: foodon.owl

pork picnic
type: Class
subclass of: pork sub-primal cut
definition: Forelimb from a shoulder.
imported from: foodon.owl

pork picnic (raw)
type: Class
subclass of: pork picnic
definition: A raw pork picnic cut.
imported from: foodon.owl

pork arm roast
type: Class
subclass of: pork roast
definition: A pork roast that is derived from the picnic sub-primal of the shoulder primal.
imported from: foodon.owl

pork arm roast (raw)
type: Class
subclass of: pork arm roast
subclass of: pork roast (raw)
definition: A raw pork arm roast.
imported from: foodon.owl

pork shoulder blade
type: Class
subclass of: pork sub-primal cut
definition: The section of a pork shoulder that includes the blade and 7-bone.
imported from: foodon.owl

pork shoulder blade (raw)
type: Class
subclass of: pork shoulder blade
subclass of: piece of pig (raw)
definition: A raw pork shoulder blade cut.
imported from: foodon.owl

pork butt steak
type: Class
subclass of: pork steak
definition: A pork steak that is derived from the Shoulder Blade. The cut location is just above the shoulder joint adjacent to the picnic.
imported from: foodon.owl

pork butt steak (raw)
type: Class
subclass of: pork butt steak
subclass of: pork steak (raw)
definition: A raw pork butt steak.
imported from: foodon.owl

pork sirloin tip
type: Class
subclass of: pork sub-primal cut
definition: The sirloin tip also known as the Knuckle is the muscle group of a pig that runs parallel with the (Femur) Leg bone that extends upward from the (Patella) Kneecap to the Ball of the Femur.
imported from: foodon.owl

pork sirloin tip (raw)
type: Class
subclass of: pork sirloin tip
subclass of: piece of pig (raw)
definition: A raw pork sirloin tip cut.
imported from: foodon.owl

pork sirloin tip roast
type: Class
subclass of: pork roast
definition: A pork roast that is derived from the leg tip.The Sirloin Tip also known as the Knuckle is the muscle group that runs parallel with the (Femur) Leg bone that extends upward from the (Patella) Kneecap to the Ball of the Femur.
imported from: foodon.owl

pork sirloin tip roast (raw)
type: Class
subclass of: pork sirloin tip roast
subclass of: pork roast (raw)
definition: A raw pork sirloin tip roast.
imported from: foodon.owl

pork leg cap steak
type: Class
subclass of: pork steak
definition: A pork steak that is derived from the Top Leg, also known as an Inside Leg; the individual muscle Gracilis. It is the cap that covers the center portion of the Top Leg.
imported from: foodon.owl

pork leg cap steak (raw)
type: Class
subclass of: pork leg cap steak
subclass of: pork steak (raw)
definition: A raw pork leg cap steak.
imported from: foodon.owl

veal leg
type: Class
subclass of: veal primal cut
definition: A veal cut that is the portion of hindquarter remaining after the removal of loin.
imported from: foodon.owl

veal leg (raw)
type: Class
subclass of: veal leg
subclass of: piece of animal (raw)
subclass of: piece of veal (raw)
definition: A raw veal leg.
imported from: foodon.owl

veal top round
type: Class
subclass of: veal sub-primal cut
definition: A cut that comes from the inside of the rear leg of a calf.
imported from: foodon.owl

veal top round (raw)
type: Class
subclass of: veal top round
subclass of: piece of animal (raw)
subclass of: piece of veal (raw)
definition: A raw veal top round cut.
imported from: foodon.owl

veal hindshank
type: Class
subclass of: veal sub-primal cut
definition: A meat cut from the upper part of a hind leg.
imported from: foodon.owl

veal hindshank (raw)
type: Class
subclass of: veal hindshank
subclass of: piece of animal (raw)
subclass of: piece of veal (raw)
definition: A raw veal hindshank cut.
imported from: foodon.owl

veal loin
type: Class
subclass of: veal primal cut
definition: A veal primal cut that comes from the area below the backbone .
imported from: foodon.owl

veal loin (raw)
type: Class
subclass of: veal loin
subclass of: piece of animal (raw)
subclass of: piece of veal (raw)
definition: A raw veal loin cut.
imported from: foodon.owl

veal rib
type: Class
subclass of: veal primal cut
definition: A veal primal cut that is situated under the front section of the backbone and used primarily for support.
imported from: foodon.owl

veal rib (raw)
type: Class
subclass of: veal rib
subclass of: piece of animal (raw)
subclass of: piece of veal (raw)
definition: A raw veal rib.
imported from: foodon.owl

veal rib roast
type: Class
subclass of: veal roast
definition: A veal roast that is derived from the rib section.
imported from: foodon.owl

veal rib roast (raw)
type: Class
subclass of: veal rib roast
subclass of: veal roast (raw)
definition: A raw veal roast.
imported from: foodon.owl

veal breast
type: Class
subclass of: veal primal cut
definition: A veal primal cut that consist of the plate and brisket portion of the forequarter (intact) and shall contain 11 ribs.
imported from: foodon.owl

veal breast (raw)
type: Class
subclass of: veal breast
subclass of: piece of animal (raw)
subclass of: piece of veal (raw)
definition: A raw veal breast.
imported from: foodon.owl

veal breast (boneless)
type: Class
subclass of: veal breast
definition: A boneless veal breast.
imported from: foodon.owl

veal breast (boneless, raw)
type: Class
subclass of: veal breast (raw)
subclass of: veal breast (boneless)
definition: A raw and boneless veal breast.
imported from: foodon.owl

veal foreshank
type: Class
subclass of: veal primal cut
definition: A veal primal cut that is the foreleg portion from the chuck.
imported from: foodon.owl

veal foreshank (raw)
type: Class
subclass of: veal foreshank
subclass of: piece of animal (raw)
subclass of: piece of veal (raw)
definition: A raw veal foreshank cut.
imported from: foodon.owl

veal sirloin
type: Class
subclass of: veal primal cut
definition: A veal primal cut that is contained within the larger primal cut 'veal loin'. It is located between the short loin and the leg (round) and includes the hip section and ends at the socket of the pelvis.
imported from: foodon.owl

veal sirloin (raw)
type: Class
subclass of: veal sirloin
subclass of: piece of animal (raw)
subclass of: piece of veal (raw)
definition: A raw veal sirloin.
imported from: foodon.owl

veal shoulder
type: Class
subclass of: veal primal cut
definition: A veal primal cut that is the upper foreleg extending from elbow to blade bone.
imported from: foodon.owl

veal shoulder (raw)
type: Class
subclass of: veal shoulder
subclass of: piece of animal (raw)
subclass of: piece of veal (raw)
definition: A raw veal shoulder.
imported from: foodon.owl

veal shoulder blade
type: Class
subclass of: veal sub-primal cut
definition: A veal meat cut in which the cut location is the full length of the Scapula or blade bone and includes the muscle groups above and below the Scapula.
imported from: foodon.owl

veal shoulder blade (raw)
type: Class
subclass of: veal shoulder blade
subclass of: piece of animal (raw)
subclass of: piece of veal (raw)
definition: A raw veal shoulder arm cut.
imported from: foodon.owl

veal shoulder arm
type: Class
subclass of: veal sub-primal cut
definition: A veal meat cut in which shoulder arm consists of the muscle groups that extend from the elbow joint to the shoulder joint and includes the first three ribs.
imported from: foodon.owl

veal shoulder arm (raw)
type: Class
subclass of: veal shoulder arm
subclass of: piece of animal (raw)
subclass of: piece of veal (raw)
definition: A raw veal shoulder blade cut.
imported from: foodon.owl

elk eye of round roast
type: Class
subclass of: elk roast
definition: A cut of meat that is found between the top and bottom round roast located on both hindquarters of the elk.
imported from: foodon.owl

elk eye of round roast (raw)
type: Class
subclass of: elk eye of round roast
subclass of: animal retail cut (raw)
subclass of: piece of elk (raw)
definition: A raw elk eye of round roast.
imported from: foodon.owl

beef porterhouse steak (raw)
type: Class
subclass of: beef porterhouse steak
subclass of: beef loin (raw)
subclass of: beef steak (raw)
definition: A raw beef porterhouse steak.
imported from: foodon.owl

beef tenderloin (raw)
type: Class
subclass of: beef tenderloin
subclass of: beef loin (raw)
definition: A raw beef tenderloin.
imported from: foodon.owl

piece of beef
type: Class
subclass of: piece of cow
subclass of: piece of animal meat
definition: A piece of animal meat that is derived from cow.
imported from: foodon.owl

piece of beef (boneless)
type: Class
subclass of: piece of beef
subclass of: piece of animal meat (boneless)
definition: A piece of boneless beef.
imported from: foodon.owl

piece(s) of beef
type: Class
subclass of: piece(s) of cow
definition: One or more pieces of beef.
imported from: foodon.owl

butchery cut of beef (raw)
type: Class
subclass of: butchery cut of beef
subclass of: piece of animal meat (raw)
subclass of: piece of cow (raw)
definition: A raw butchery cut of beef.
imported from: foodon.owl

bison retail cut
type: Class
subclass of: animal retail cut
subclass of: butchery cut of bison
definition: A bison meat cut that is derived from a sub-primal, individual muscle cut or minor primal cut.
imported from: foodon.owl

bison steak
type: Class
subclass of: bison retail cut
definition: A bison meat cut that has a flat-cut appearance.
imported from: foodon.owl

bison sirloin
type: Class
subclass of: bison primal cut
definition: A bison primal cut that is contained within the larger cut 'bison loin'. It is located between the short loin and the round and includes the hip section and ends at the socket of the pelvis.
imported from: foodon.owl

bison sirloin (raw)
type: Class
subclass of: bison sirloin
subclass of: piece of bison (raw)
definition: A raw bison sirloin cut.
imported from: foodon.owl

bison top sirloin butt
type: Class
subclass of: beef sub-primal cut
definition: A bison cut that is located behind the short loin on the top back end of the animal.
imported from: foodon.owl

bison top sirloin butt (raw)
type: Class
subclass of: bison top sirloin butt
subclass of: beef sub-primal cut (raw)
definition: A raw bison top sirloin butt.
imported from: foodon.owl

bison top sirloin steak
type: Class
subclass of: bison steak
definition: A steak cut from the bison top sirloin butt.
imported from: foodon.owl

bison top sirloin steak (raw)
type: Class
subclass of: bison top sirloin steak
subclass of: bison steak (raw)
definition: A raw bison top sirloin steak.
imported from: foodon.owl

bison round
type: Class
subclass of: bison primal cut
definition: A bison cut that comes from the 'round', the rear leg of the bison.
imported from: foodon.owl

bison round (raw)
type: Class
subclass of: bison round
subclass of: piece of bison (raw)
definition: A raw bison round cut.
imported from: foodon.owl

bison top round
type: Class
subclass of: bison sub-primal cut
definition: A bison cut that comes from the inside of the rear leg.
imported from: foodon.owl

bison top round (raw)
type: Class
subclass of: bison top round
subclass of: piece of bison (raw)
definition: A raw bison top round cut.
imported from: foodon.owl

bison top round steak
type: Class
subclass of: bison steak
definition: A steak cut from the bison top round.
imported from: foodon.owl

bison top round steak (raw)
type: Class
subclass of: bison top round steak
subclass of: bison steak (raw)
definition: A raw bison top round steak.
imported from: foodon.owl

bison ribeye steak
type: Class
subclass of: bison steak
definition: A bison steak that is a cut from the rib-eye roast.
imported from: foodon.owl

bison ribeye steak (raw)
type: Class
subclass of: bison ribeye steak
subclass of: bison steak (raw)
definition: A raw bison ribeye steak.
imported from: foodon.owl

bison chuck
type: Class
subclass of: bison primal cut
definition: A bison cut that extends from the neck to the fifth rib and includes the shoulder blade and upper arm.
imported from: foodon.owl

bison chuck (raw)
type: Class
subclass of: bison chuck
subclass of: piece of bison (raw)
definition: A raw bison chuck cut.
imported from: foodon.owl

bison shoulder clod
type: Class
subclass of: bison sub-primal cut
definition: A large muscle system which lies dorsal and posterior to the elbow joint, ventral and posterior to the ridge of the scapula (blade bone) and is anterior to the 6th rib.
imported from: foodon.owl

bison shoulder clod (raw)
type: Class
subclass of: bison shoulder clod
subclass of: piece of bison (raw)
definition: A raw bison shoulder clod.
imported from: foodon.owl

buffalo round
type: Class
subclass of: buffalo primal cut
definition: A buffalo cut that comes from the 'round', the rear leg of the buffalo.
imported from: foodon.owl

buffalo round (raw)
type: Class
subclass of: buffalo round
subclass of: piece of buffalo (raw)
definition: A raw buffalo round cut.
imported from: foodon.owl

buffalo top round
type: Class
subclass of: buffalo sub-primal cut
definition: A buffalo cut that comes from the inside of the rear leg.
imported from: foodon.owl

buffalo top round (raw)
type: Class
subclass of: buffalo top round
subclass of: piece of buffalo (raw)
definition: A raw buffalo top round cut.
imported from: foodon.owl

buffalo top round steak
type: Class
subclass of: buffalo steak
definition: A steak cut from the buffalo top round.
imported from: foodon.owl

buffalo top round steak (raw)
type: Class
subclass of: buffalo top round steak
subclass of: buffalo steak (raw)
definition: A raw buffalo top round steak.
imported from: foodon.owl

beef primal cut (raw)
type: Class
subclass of: beef primal cut
subclass of: butchery cut of beef (raw)
definition: A raw beef primal cut.
imported from: foodon.owl

beef sub-primal cut (raw)
type: Class
subclass of: beef sub-primal cut
subclass of: butchery cut of beef (raw)
definition: A raw beef sub-primal cut.
imported from: foodon.owl

beef retail cut (raw)
type: Class
subclass of: beef retail cut
subclass of: butchery cut of beef (raw)
subclass of: animal retail cut (raw)
definition: A raw beef retail cut.
imported from: foodon.owl

animal fillet
type: Class
subclass of: butchery cut of animal
definition: A butchery cut of animal that is typically boneless.
imported from: foodon.owl

animal fillet (raw)
type: Class
subclass of: animal fillet
subclass of: piece of animal (raw)
definition: A raw animal fillet cut.
imported from: foodon.owl

piece of animal (raw)
type: Class
subclass of: piece of animal
definition: A raw piece of animal.
imported from: foodon.owl

piece of animal (with skin)
type: Class
subclass of: piece of animal
definition: A piece of animal that contains skin.
imported from: foodon.owl

piece of animal (skinless)
type: Class
subclass of: piece of animal
definition: A piece of animal that is skinless.
imported from: foodon.owl

piece of animal (with skin, raw)
type: Class
subclass of: piece of animal (raw)
subclass of: piece of animal (with skin)
definition: A piece of animal that contains the skin and is raw.
imported from: foodon.owl

piece of animal (skinless, raw)
type: Class
subclass of: piece of animal (raw)
subclass of: piece of animal (skinless)
definition: A raw skinless piece of animal.
imported from: foodon.owl

animal organ (raw)
type: Class
subclass of: animal organ
subclass of: piece of animal (raw)
definition: A raw animal organ that is obtained from an animal during a butchery process.
imported from: foodon.owl

piece of animal organ
type: Class
subclass of: piece of animal
definition: A piece of an animal organ.
imported from: foodon.owl

piece of animal organ (raw)
type: Class
subclass of: piece of animal (raw)
subclass of: piece of animal organ
definition: A raw piece of an animal organ.
definition: A raw piece of animal organ.
imported from: foodon.owl

piece of animal meat
type: Class
subclass of: piece of animal
definition: A piece of meat that is derived from an animal.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

piece of animal meat (raw)
type: Class
subclass of: piece of animal (raw)
subclass of: piece of animal meat
definition: A raw piece of animal meat.
imported from: foodon.owl

piece of animal meat (skinless)
type: Class
subclass of: piece of animal (skinless)
subclass of: piece of animal meat
definition: A piece of skinless animal meat.
imported from: foodon.owl

piece of animal meat (skinless, raw)
type: Class
subclass of: piece of animal (skinless, raw)
subclass of: piece of animal meat (raw)
subclass of: piece of animal meat (skinless)
definition: A raw piece of skinless animal meat.
imported from: foodon.owl

piece of animal meat (with skin)
type: Class
subclass of: piece of animal (with skin)
subclass of: piece of animal meat
definition: A piece of animal meat that contains skin.
imported from: foodon.owl

piece of animal meat (with skin, raw)
type: Class
subclass of: piece of animal (with skin, raw)
subclass of: piece of animal meat (raw)
subclass of: piece of animal meat (with skin)
definition: A raw piece of animal meat that contains skin.
imported from: foodon.owl

piece of animal meat (boneless)
type: Class
subclass of: piece of animal meat
definition: A piece of boneless animal meat.
imported from: foodon.owl

piece of animal meat (with bone)
type: Class
subclass of: piece of animal meat
definition: A piece of animal meat that contains bone material.
imported from: foodon.owl

piece of animal meat (with bone, raw)
type: Class
subclass of: piece of animal meat (raw)
subclass of: piece of animal meat (with bone)
definition: A raw piece of animal meat that contains bone material.
imported from: foodon.owl

animal thigh
type: Class
subclass of: piece of animal meat
definition: A whole thigh that is obtained from an animal.
imported from: foodon.owl

animal breast
type: Class
subclass of: animal organ
subclass of: piece of animal meat
definition: A whole breast that is obtained from an animal.
imported from: foodon.owl

animal wing
type: Class
subclass of: piece of animal meat
definition: A whole wing that is obtained from an animal.
imported from: foodon.owl

animal neck
type: Class
subclass of: piece of animal meat
definition: A whole neck that is obtained from an animal.
imported from: foodon.owl

animal leg
type: Class
subclass of: piece of animal meat
definition: A whole leg that is obtained from an animal.
imported from: foodon.owl

animal breast (raw)
type: Class
subclass of: animal organ (raw)
subclass of: piece of animal meat (raw)
subclass of: animal breast
definition: A whole raw animal breast.
imported from: foodon.owl

animal wing (raw)
type: Class
subclass of: piece of animal meat (raw)
subclass of: animal wing
definition: A whole raw animal wing.
imported from: foodon.owl

animal neck (raw)
type: Class
subclass of: piece of animal meat (raw)
subclass of: animal neck
definition: A whole raw animal neck.
imported from: foodon.owl

animal leg (raw)
type: Class
subclass of: piece of animal meat (raw)
subclass of: animal leg
definition: A whole raw animal leg.
imported from: foodon.owl

piece of animal breast
type: Class
subclass of: animal breast
subclass of: piece of light animal meat
definition: A piece of an animal breast.
imported from: foodon.owl

piece of animal breast (raw)
type: Class
subclass of: animal breast (raw)
subclass of: piece of animal breast
subclass of: piece of light animal meat (raw)
definition: A raw piece of an animal breast.
imported from: foodon.owl

piece of animal breast (skinless)
type: Class
subclass of: piece of animal breast
subclass of: piece of light animal meat (skinless)
subclass of: animal breast (skinless)
definition: A piece of skinless animal breast.
imported from: foodon.owl

piece of animal breast (skinless, raw)
type: Class
subclass of: piece of animal breast (raw)
subclass of: piece of animal breast (skinless)
subclass of: piece of light animal meat (skinless, raw)
subclass of: animal breast (skinless, raw)
definition: A raw piece of skinless animal breast.
imported from: foodon.owl

piece of animal breast (with skin)
type: Class
subclass of: piece of animal breast
subclass of: piece of light animal meat (with skin)
subclass of: animal breast (with skin)
definition: A piece of animal breast that contains skin.
imported from: foodon.owl

piece of animal breast (with skin, raw)
type: Class
subclass of: piece of animal breast (raw)
subclass of: piece of animal breast (with skin)
subclass of: piece of light animal meat (with skin, raw)
subclass of: animal breast (with skin, raw)
definition: A raw piece of animal breast that contains skin.
imported from: foodon.owl

piece of animal breast (skinless, boneless)
type: Class
subclass of: piece of animal breast (skinless)
subclass of: animal breast (skinless, boneless)
definition: A piece of skinless and boneless animal breast.
imported from: foodon.owl

piece of animal breast (skinless, boneless, raw)
type: Class
subclass of: piece of animal breast (skinless, raw)
subclass of: piece of animal breast (skinless, boneless)
subclass of: animal breast (skinless, boneless, raw)
definition: A raw piece of skinless and boneless animal breast.
imported from: foodon.owl

piece of light animal meat
type: Class
subclass of: piece of animal meat
definition: A piece of light meat that comes from an animal breast or wing.
imported from: foodon.owl

piece of light animal meat (raw)
type: Class
subclass of: piece of animal meat (raw)
subclass of: piece of light animal meat
definition: A raw piece of light animal meat.
imported from: foodon.owl

piece of light animal meat (with skin)
type: Class
subclass of: piece of animal meat (with skin)
subclass of: piece of light animal meat
definition: A piece of light animal meat that contains skin.
imported from: foodon.owl

piece of light animal meat (with skin, raw)
type: Class
subclass of: piece of animal meat (with skin, raw)
subclass of: piece of light animal meat (raw)
subclass of: piece of light animal meat (with skin)
definition: A raw piece of light animal meat that contains skin.
imported from: foodon.owl

piece of light animal meat (skinless)
type: Class
subclass of: piece of animal meat (skinless)
subclass of: piece of light animal meat
definition: A piece of skinless light animal meat.
imported from: foodon.owl

piece of light animal meat (skinless, raw)
type: Class
subclass of: piece of animal meat (skinless, raw)
subclass of: piece of light animal meat (raw)
subclass of: piece of light animal meat (skinless)
definition: A raw piece of skinless light animal meat.
imported from: foodon.owl

butchery cut of animal (raw)
type: Class
subclass of: butchery cut of animal
definition: A raw cut of animal meat.
imported from: foodon.owl

animal primal cut (raw)
type: Class
subclass of: animal primal cut
definition: A raw animal primal cut.
imported from: foodon.owl

animal sub-primal cut (raw)
type: Class
subclass of: animal sub-primal cut
definition: A raw animal sub-primal cut.
imported from: foodon.owl

animal retail cut (raw)
type: Class
subclass of: animal retail cut
subclass of: piece of animal (raw)
definition: A raw animal retail cut.
imported from: foodon.owl

animal steak
type: Class
subclass of: animal retail cut
definition: An animal meat cut that has a flat-cut appearance.
imported from: foodon.owl

animal steak (raw)
type: Class
subclass of: animal retail cut (raw)
subclass of: animal steak
definition: A raw animal steak.
imported from: foodon.owl

animal roast
type: Class
subclass of: animal retail cut
definition: A retail cut of meat from an animal that is of a size for slicing into more than one portion and is suitable for roasting.
imported from: foodon.owl

animal roast (raw)
type: Class
subclass of: animal retail cut (raw)
subclass of: animal roast
definition: A raw animal roast.
imported from: foodon.owl

animal roast (boneless)
type: Class
subclass of: animal roast
definition: A boneless animal roast.
imported from: foodon.owl

animal roast (boneless, raw)
type: Class
subclass of: animal roast (raw)
subclass of: animal roast (boneless)
definition: A raw and boneless animal roast.
imported from: foodon.owl

animal chop
type: Class
subclass of: animal retail cut
definition: A retail cut of meat from an animal that is perpendicular to the spine, and usually containing a rib or riblet part of a vertebra.
imported from: foodon.owl

animal chop (raw)
type: Class
subclass of: animal retail cut (raw)
subclass of: animal chop
definition: A raw animal chop.
imported from: foodon.owl

animal chop (boneless)
type: Class
subclass of: animal chop
definition: A boneless animal chop.
imported from: foodon.owl

animal chop (boneless, raw)
type: Class
subclass of: animal chop (raw)
subclass of: animal chop (boneless)
definition: A raw and boneless animal chop.
imported from: foodon.owl

piece of animal meat (boneless, raw)
type: Class
subclass of: piece of animal meat (raw)
subclass of: piece of animal meat (boneless)
definition: A raw piece of boneless animal meat.
imported from: foodon.owl

animal breast (skinless)
type: Class
subclass of: piece of animal meat (skinless)
subclass of: animal breast
definition: A skinless animal breast.
imported from: foodon.owl

animal breast (skinless, raw)
type: Class
subclass of: piece of animal meat (skinless, raw)
subclass of: animal breast (raw)
subclass of: animal breast (skinless)
definition: A raw skinless animal breast.
imported from: foodon.owl

animal breast (with skin)
type: Class
subclass of: piece of animal meat (with skin)
subclass of: animal breast
definition: An animal breast that contains skin.
imported from: foodon.owl

animal breast (with skin, raw)
type: Class
subclass of: piece of animal meat (with skin, raw)
subclass of: animal breast (raw)
subclass of: animal breast (with skin)
definition: A raw animal breast that contains skin.
imported from: foodon.owl

animal breast (skinless, boneless)
type: Class
subclass of: piece of animal meat (boneless)
subclass of: animal breast (skinless)
definition: A skinless and boneless animal breast.
imported from: foodon.owl

animal breast (skinless, boneless, raw)
type: Class
subclass of: piece of animal meat (boneless, raw)
subclass of: animal breast (skinless, raw)
subclass of: animal breast (skinless, boneless)
definition: A raw, skinless and boneless animal breast.
imported from: foodon.owl

animal roast (boneless, seasoned, fresh frozen)
type: Class
subclass of: animal roast (boneless)
definition: A boneless, seasoned and freshly frozen animal roast.
imported from: foodon.owl

avian animal material
type: Class
subclass of: animal material
definition: Material that derives from some avian animal.
imported from: foodon.owl

piece of avian animal
type: Class
subclass of: piece of animal
subclass of: avian animal material
definition: A severed part of an avian animal.
imported from: foodon.owl

piece of avian animal (raw)
type: Class
subclass of: piece of animal (raw)
subclass of: piece of avian animal
definition: A raw piece of avian animal.
imported from: foodon.owl

piece of avian animal meat
type: Class
subclass of: piece of animal meat
subclass of: piece of avian animal
definition: A piece of meat that is derived from an avian animal.
imported from: foodon.owl

piece of avian animal meat (raw)
type: Class
subclass of: piece of animal meat (raw)
subclass of: piece of avian animal (raw)
subclass of: piece of avian animal meat
definition: A raw piece of avian animal meat.
imported from: foodon.owl

chicken material
type: Class
subclass of: avian animal material
definition: Material that derives from some chicken.
imported from: foodon.owl

chicken fillet (raw)
type: Class
subclass of: chicken fillet
subclass of: animal fillet (raw)
subclass of: piece of chicken (raw)
definition: A raw chicken fillet cut.
imported from: foodon.owl

piece of chicken
type: Class
subclass of: piece of avian animal
subclass of: chicken material
definition: A severed part of a chicken.
imported from: foodon.owl

butchery cut of chicken
type: Class
subclass of: piece of chicken
definition: A piece of chicken meat which has been cut according to butchery practice.
imported from: foodon.owl

turkey material
type: Class
subclass of: avian animal material
definition: Material that derives from some turkey.
imported from: foodon.owl

piece of turkey
type: Class
subclass of: piece of avian animal
subclass of: turkey material
definition: A severed part of a turkey.
imported from: foodon.owl

piece of turkey (raw)
type: Class
subclass of: piece of avian animal (raw)
subclass of: piece of turkey
definition: A raw piece of turkey.
imported from: foodon.owl

piece of turkey (with skin)
type: Class
subclass of: piece of animal (with skin)
subclass of: piece of turkey
definition: A piece of turkey that contains skin.
imported from: foodon.owl

piece of turkey (skinless)
type: Class
subclass of: piece of animal (skinless)
subclass of: piece of turkey
definition: A piece of turkey that is skinless.
imported from: foodon.owl

piece of turkey (with skin, raw)
type: Class
subclass of: piece of animal (with skin, raw)
subclass of: piece of turkey (raw)
subclass of: piece of turkey (with skin)
definition: A piece of turkey that contains the skin and is raw.
imported from: foodon.owl

piece of turkey (skinless, raw)
type: Class
subclass of: piece of animal (skinless, raw)
subclass of: piece of turkey (raw)
subclass of: piece of turkey (skinless)
definition: A raw skinless piece of turkey.
imported from: foodon.owl

turkey organ
type: Class
subclass of: animal organ
subclass of: piece of turkey
definition: An organ that derives from a turkey.
imported from: foodon.owl

turkey organ (raw)
type: Class
subclass of: animal organ (raw)
subclass of: piece of turkey (raw)
subclass of: turkey organ
definition: A raw animal organ that is obtained from a turkey during a butchery process.
imported from: foodon.owl

piece of turkey organ
type: Class
subclass of: piece of animal organ
subclass of: piece of turkey
definition: A piece of a turkey organ.
imported from: foodon.owl

piece of turkey organ (raw)
type: Class
subclass of: piece of animal organ (raw)
subclass of: piece of turkey (raw)
subclass of: piece of turkey organ
definition: A raw piece of a turkey organ.
definition: A raw piece of turkey organ.
imported from: foodon.owl

piece of turkey meat
type: Class
subclass of: piece of avian animal meat
subclass of: piece of turkey
definition: A piece of meat that is derived from a turkey.
imported from: foodon.owl

piece of turkey meat (raw)
type: Class
subclass of: piece of avian animal meat (raw)
subclass of: piece of turkey (raw)
subclass of: piece of turkey meat
definition: A raw piece of turkey meat.
imported from: foodon.owl

piece of turkey meat (skinless)
type: Class
subclass of: piece of animal meat (skinless)
subclass of: piece of turkey (skinless)
subclass of: piece of turkey meat
definition: A piece of skinless turkey meat.
imported from: foodon.owl

piece of turkey meat (skinless, raw)
type: Class
subclass of: piece of animal meat (skinless, raw)
subclass of: piece of turkey (skinless, raw)
subclass of: piece of turkey meat (raw)
subclass of: piece of turkey meat (skinless)
definition: A raw piece of skinless turkey meat.
imported from: foodon.owl

piece of turkey meat (with skin)
type: Class
subclass of: piece of animal meat (with skin)
subclass of: piece of turkey (with skin)
subclass of: piece of turkey meat
definition: A piece of turkey meat that contains skin.
imported from: foodon.owl

piece of turkey meat (with skin, raw)
type: Class
subclass of: piece of animal meat (with skin, raw)
subclass of: piece of turkey (with skin, raw)
subclass of: piece of turkey meat (raw)
subclass of: piece of turkey meat (with skin)
definition: A raw piece of turkey meat that contains skin.
imported from: foodon.owl

piece of turkey meat (boneless)
type: Class
subclass of: piece of animal meat (boneless)
subclass of: piece of turkey meat
definition: A piece of boneless turkey meat.
imported from: foodon.owl

piece of turkey meat (with bone)
type: Class
subclass of: piece of animal meat (with bone)
subclass of: piece of turkey meat
definition: A piece of turkey meat that contains bone material.
imported from: foodon.owl

piece of turkey meat (with bone, raw)
type: Class
subclass of: piece of animal meat (with bone, raw)
subclass of: piece of turkey meat (raw)
subclass of: piece of turkey meat (with bone)
definition: A raw piece of turkey meat that contains bone material.
imported from: foodon.owl

turkey breast (skinless)
type: Class
subclass of: turkey breast
subclass of: animal breast (skinless)
subclass of: piece of turkey meat (skinless)
definition: A skinless turkey breast.
imported from: foodon.owl

turkey breast (skinless, raw)
type: Class
subclass of: animal breast (skinless, raw)
subclass of: piece of turkey meat (skinless, raw)
subclass of: turkey breast (skinless)
subclass of: turkey breast (raw)
definition: A raw skinless turkey breast.
imported from: foodon.owl

turkey breast (with skin)
type: Class
subclass of: turkey breast
subclass of: animal breast (with skin)
subclass of: piece of turkey meat (with skin)
definition: A turkey breast that contains skin.
imported from: foodon.owl

turkey breast (with skin, raw)
type: Class
subclass of: animal breast (with skin, raw)
subclass of: piece of turkey meat (with skin, raw)
subclass of: turkey breast (with skin)
subclass of: turkey breast (raw)
definition: A raw turkey breast that contains skin.
imported from: foodon.owl

turkey breast (skinless, boneless)
type: Class
subclass of: animal breast (skinless, boneless)
subclass of: piece of turkey meat (boneless)
subclass of: turkey breast (skinless)
subclass of: piece of poultry meat (boneless)
definition: A skinless and boneless turkey breast.
imported from: foodon.owl

turkey breast (skinless, boneless, raw)
type: Class
subclass of: animal breast (skinless, boneless, raw)
subclass of: turkey breast (skinless, raw)
subclass of: turkey breast (skinless, boneless)
definition: A raw, skinless and boneless turkey breast.
imported from: foodon.owl

piece of turkey breast
type: Class
subclass of: turkey breast
subclass of: piece of animal breast
subclass of: piece of turkey organ
definition: A piece of a turkey breast.
imported from: foodon.owl

piece of turkey breast (raw)
type: Class
subclass of: piece of animal breast (raw)
subclass of: piece of turkey organ (raw)
subclass of: piece of turkey breast
subclass of: turkey breast (raw)
definition: A raw piece of a turkey breast.
imported from: foodon.owl

piece of turkey breast (skinless)
type: Class
subclass of: piece of animal breast (skinless)
subclass of: turkey breast (skinless)
subclass of: piece of turkey breast
definition: A piece of skinless turkey breast.
imported from: foodon.owl

piece of turkey breast (skinless, raw)
type: Class
subclass of: piece of animal breast (skinless, raw)
subclass of: turkey breast (skinless, raw)
subclass of: piece of turkey breast (raw)
subclass of: piece of turkey breast (skinless)
definition: A raw piece of skinless turkey breast.
imported from: foodon.owl

piece of turkey breast (with skin)
type: Class
subclass of: piece of animal breast (with skin)
subclass of: turkey breast (with skin)
subclass of: piece of turkey breast
definition: A piece of turkey breast that contains skin.
imported from: foodon.owl

piece of turkey breast (with skin, raw)
type: Class
subclass of: piece of animal breast (with skin, raw)
subclass of: turkey breast (with skin, raw)
subclass of: piece of turkey breast (raw)
subclass of: piece of turkey breast (with skin)
definition: A raw piece of turkey breast that contains skin.
imported from: foodon.owl

piece of turkey breast (skinless, boneless)
type: Class
subclass of: piece of animal breast (skinless, boneless)
subclass of: turkey breast (skinless, boneless)
subclass of: piece of turkey breast (skinless)
definition: A piece of skinless and boneless turkey breast.
imported from: foodon.owl

piece of turkey breast (skinless, boneless, raw)
type: Class
subclass of: piece of animal breast (skinless, boneless, raw)
subclass of: turkey breast (skinless, boneless, raw)
subclass of: piece of turkey breast (skinless, raw)
subclass of: piece of turkey breast (skinless, boneless)
definition: A raw piece of skinless and boneless turkey breast.
imported from: foodon.owl

poultry material
type: Class
subclass of: animal material
definition: Material that derives from some poultry.
imported from: foodon.owl

piece of poultry
type: Class
subclass of: organism piece
subclass of: poultry material
definition: A severed part of a poultry.
imported from: foodon.owl

piece of poultry (raw)
type: Class
subclass of: piece of poultry
definition: A raw piece of poultry.
imported from: foodon.owl

piece of poultry meat (raw)
type: Class
subclass of: piece of poultry (raw)
subclass of: food (raw)
subclass of: piece of poultry meat
definition: A raw piece of poultry meat.
imported from: foodon.owl

piece of poultry meat (boneless)
type: Class
subclass of: piece of poultry meat
definition: A piece of boneless poultry meat.
imported from: foodon.owl

piece of poultry meat (with bone)
type: Class
subclass of: piece of poultry meat
definition: A piece of poultry meat that contains bone material.
imported from: foodon.owl

piece of poultry meat (with bone, raw)
type: Class
subclass of: piece of poultry meat (raw)
subclass of: piece of poultry meat (with bone)
definition: A raw piece of poultry meat that contains bone material.
imported from: foodon.owl

poultry breast (raw)
type: Class
subclass of: animal breast (raw)
subclass of: piece of poultry meat (raw)
subclass of: poultry breast
definition: A whole raw poultry breast.
imported from: foodon.owl

poultry wing (raw)
type: Class
subclass of: animal wing (raw)
subclass of: piece of poultry meat (raw)
subclass of: poultry wing
definition: A whole raw poultry wing.
imported from: foodon.owl

poultry neck (raw)
type: Class
subclass of: animal neck (raw)
subclass of: piece of poultry meat (raw)
subclass of: poultry neck
definition: A whole raw poultry neck.
imported from: foodon.owl

poultry leg (raw)
type: Class
subclass of: animal leg (raw)
subclass of: piece of poultry meat (raw)
subclass of: poultry leg
definition: A whole raw poultry leg.
imported from: foodon.owl

bison material
type: Class
subclass of: animal material
definition: Material that derives from some bison.
imported from: foodon.owl

piece of bison
type: Class
subclass of: piece of animal
subclass of: bison material
definition: A severed part of a bison.
imported from: foodon.owl

piece of bison (raw)
type: Class
subclass of: piece of animal (raw)
subclass of: piece of bison
definition: A raw piece of bison.
imported from: foodon.owl

butchery cut of bison
type: Class
subclass of: piece of bison
definition: A piece of bison meat which has been cut according to butchery practice.
imported from: foodon.owl

bison primal cut (raw)
type: Class
subclass of: bison primal cut
definition: A raw bison primal cut.
imported from: foodon.owl

bison sub-primal cut (raw)
type: Class
subclass of: bison sub-primal cut
definition: A raw bison sub-primal cut.
imported from: foodon.owl

bison retail cut (raw)
type: Class
subclass of: bison retail cut
subclass of: animal retail cut (raw)
subclass of: piece of bison (raw)
definition: A raw bison retail cut.
imported from: foodon.owl

bison steak (raw)
type: Class
subclass of: bison steak
subclass of: bison retail cut (raw)
definition: A raw bison steak.
imported from: foodon.owl

bison roast
type: Class
subclass of: bison retail cut
definition: A retail cut of meat from a bison that is of a size for slicing into more than one portion and is suitable for roasting.
imported from: foodon.owl

bison roast (raw)
type: Class
subclass of: bison retail cut (raw)
subclass of: bison roast
definition: A raw bison roast.
imported from: foodon.owl

bison roast (boneless)
type: Class
subclass of: bison roast
definition: A boneless bison roast.
imported from: foodon.owl

bison roast (boneless, raw)
type: Class
subclass of: bison roast (raw)
subclass of: bison roast (boneless)
definition: A raw and boneless bison roast.
imported from: foodon.owl

bison chop
type: Class
subclass of: bison retail cut
definition: A retail cut of meat from a bison that is perpendicular to the spine, and usually containing a rib or riblet part of a vertebra.
imported from: foodon.owl

bison chop (raw)
type: Class
subclass of: bison retail cut (raw)
subclass of: bison chop
definition: A raw bison chop.
imported from: foodon.owl

cow material
type: Class
subclass of: animal material
definition: Material that derives from some cow.
imported from: foodon.owl

piece of cow (raw)
type: Class
subclass of: piece of cow
subclass of: piece of animal (raw)
definition: A raw piece of beef.
imported from: foodon.owl
database_cross_reference: siren:F9737

beef roast (raw)
type: Class
subclass of: beef roast
subclass of: beef retail cut (raw)
definition: A raw beef roast.
imported from: foodon.owl

beef roast (boneless)
type: Class
subclass of: beef roast
subclass of: piece of beef (boneless)
definition: A boneless beef roast.
imported from: foodon.owl

beef roast (boneless, raw)
type: Class
subclass of: piece of animal meat (boneless, raw)
subclass of: beef roast (raw)
subclass of: beef roast (boneless)
definition: A raw and boneless beef roast.
imported from: foodon.owl

beef roast (boneless, seasoned, fresh frozen)
type: Class
subclass of: beef roast (boneless)
definition: A boneless, seasoned and freshly frozen beef roast.
imported from: foodon.owl

beef chop
type: Class
subclass of: beef retail cut
definition: A retail cut of meat from a beef that is perpendicular to the spine, and usually containing a rib or riblet part of a vertebra.
imported from: foodon.owl

beef chop (raw)
type: Class
subclass of: beef retail cut (raw)
subclass of: beef chop
definition: A raw beef chop.
imported from: foodon.owl

beef chop (boneless)
type: Class
subclass of: piece of beef (boneless)
subclass of: beef chop
definition: A boneless beef chop.
imported from: foodon.owl

beef chop (boneless, raw)
type: Class
subclass of: piece of animal meat (boneless, raw)
subclass of: beef chop (raw)
subclass of: beef chop (boneless)
definition: A raw and boneless beef chop.
imported from: foodon.owl

buffalo material
type: Class
subclass of: animal material
definition: Material that derives from some buffalo.
imported from: foodon.owl

piece of buffalo
type: Class
subclass of: piece of animal
subclass of: buffalo material
definition: A severed part of a buffalo.
imported from: foodon.owl

piece of buffalo (raw)
type: Class
subclass of: piece of animal (raw)
subclass of: piece of buffalo
definition: A raw piece of buffalo.
imported from: foodon.owl

butchery cut of buffalo
type: Class
subclass of: piece of buffalo
definition: A piece of buffalo meat which has been cut according to butchery practice.
imported from: foodon.owl

buffalo primal cut (raw)
type: Class
subclass of: buffalo primal cut
definition: A raw buffalo primal cut.
imported from: foodon.owl

buffalo sub-primal cut (raw)
type: Class
subclass of: buffalo sub-primal cut
definition: A raw buffalo sub-primal cut.
imported from: foodon.owl

buffalo retail cut (raw)
type: Class
subclass of: buffalo retail cut
subclass of: animal retail cut (raw)
subclass of: piece of buffalo (raw)
definition: A raw buffalo retail cut.
imported from: foodon.owl

buffalo steak (raw)
type: Class
subclass of: buffalo steak
subclass of: buffalo retail cut (raw)
definition: A raw buffalo steak.
imported from: foodon.owl

buffalo roast
type: Class
subclass of: buffalo retail cut
definition: A retail cut of meat from a buffalo that is of a size for slicing into more than one portion and is suitable for roasting.
imported from: foodon.owl

buffalo roast (raw)
type: Class
subclass of: buffalo retail cut (raw)
subclass of: buffalo roast
definition: A raw buffalo roast.
imported from: foodon.owl

buffalo roast (boneless)
type: Class
subclass of: buffalo roast
definition: A boneless buffalo roast.
imported from: foodon.owl

buffalo roast (boneless, raw)
type: Class
subclass of: buffalo roast (raw)
subclass of: buffalo roast (boneless)
definition: A raw and boneless buffalo roast.
imported from: foodon.owl

buffalo chop
type: Class
subclass of: buffalo retail cut
definition: A retail cut of meat from a buffalo that is perpendicular to the spine, and usually containing a rib or riblet part of a vertebra.
imported from: foodon.owl

buffalo chop (raw)
type: Class
subclass of: buffalo retail cut (raw)
subclass of: buffalo chop
definition: A raw buffalo chop.
imported from: foodon.owl

lamb food product
type: Class
subclass of: animal food product
definition: A food product that is derived from some lamb.
imported from: foodon.owl

lamb material
type: Class
subclass of: lamb food product
subclass of: animal material
definition: Material that derives from some lamb.
imported from: foodon.owl

piece of lamb
type: Class
subclass of: organism piece
subclass of: lamb material
definition: A severed part of a lamb.
imported from: foodon.owl

piece of lamb (raw)
type: Class
subclass of: piece of lamb
subclass of: food (raw)
definition: A raw piece of lamb.
imported from: foodon.owl

butchery cut of lamb
type: Class
subclass of: piece of lamb
definition: A piece of lamb meat which has been cut according to butchery practice.
imported from: foodon.owl

lamb primal cut (raw)
type: Class
subclass of: lamb primal cut
definition: A raw lamb primal cut.
imported from: foodon.owl

lamb sub-primal cut (raw)
type: Class
subclass of: lamb sub-primal cut
definition: A raw lamb sub-primal cut.
imported from: foodon.owl

lamb retail cut
type: Class
subclass of: butchery cut of lamb
definition: A lamb meat cut that is derived from a sub-primal, individual muscle cut or minor primal cut.
imported from: foodon.owl

lamb retail cut (raw)
type: Class
subclass of: piece of lamb (raw)
subclass of: lamb retail cut
definition: A raw lamb retail cut.
imported from: foodon.owl

lamb roast (raw)
type: Class
subclass of: lamb roast
subclass of: animal roast (raw)
subclass of: lamb retail cut (raw)
definition: A raw lamb roast.
imported from: foodon.owl

lamb roast (boneless)
type: Class
subclass of: lamb roast
subclass of: animal roast (boneless)
definition: A boneless lamb roast.
imported from: foodon.owl

lamb roast (boneless, raw)
type: Class
subclass of: animal roast (boneless, raw)
subclass of: lamb roast (raw)
subclass of: lamb roast (boneless)
definition: A raw and boneless lamb roast.
imported from: foodon.owl

lamb roast (boneless, seasoned, fresh frozen)
type: Class
subclass of: animal roast (boneless, seasoned, fresh frozen)
subclass of: lamb roast (boneless)
definition: A boneless, seasoned and freshly frozen lamb roast.
imported from: foodon.owl

lamb chop (boneless)
type: Class
subclass of: lamb chop
subclass of: animal chop (boneless)
definition: A boneless lamb chop.
imported from: foodon.owl

lamb chop (boneless, raw)
type: Class
subclass of: animal chop (boneless, raw)
subclass of: lamb chop (boneless)
subclass of: lamb chop (raw)
definition: A raw and boneless lamb chop.
imported from: foodon.owl

veal material
type: Class
subclass of: animal material
definition: Material that derives from some veal.
imported from: foodon.owl

piece of veal
type: Class
subclass of: organism piece
subclass of: veal material
definition: A severed part of a veal.
imported from: foodon.owl

piece of veal (raw)
type: Class
subclass of: piece of veal
definition: A raw piece of veal.
imported from: foodon.owl

butchery cut of veal
type: Class
subclass of: piece of veal
definition: A piece of veal meat which has been cut according to butchery practice.
imported from: foodon.owl

veal primal cut (raw)
type: Class
subclass of: veal primal cut
definition: A raw veal primal cut.
imported from: foodon.owl

veal sub-primal cut (raw)
type: Class
subclass of: veal sub-primal cut
definition: A raw veal sub-primal cut.
imported from: foodon.owl

veal retail cut
type: Class
subclass of: butchery cut of veal
definition: A veal meat cut that is derived from a sub-primal, individual muscle cut or minor primal cut.
imported from: foodon.owl

veal retail cut (raw)
type: Class
subclass of: piece of veal (raw)
subclass of: veal retail cut
definition: A raw veal retail cut.
imported from: foodon.owl

veal roast (raw)
type: Class
subclass of: veal roast
subclass of: animal roast (raw)
subclass of: veal retail cut (raw)
definition: A raw veal roast.
imported from: foodon.owl

veal roast (boneless)
type: Class
subclass of: veal roast
subclass of: animal roast (boneless)
definition: A boneless veal roast.
imported from: foodon.owl

veal roast (boneless, raw)
type: Class
subclass of: animal roast (boneless, raw)
subclass of: veal roast (raw)
subclass of: veal roast (boneless)
definition: A raw and boneless veal roast.
imported from: foodon.owl

veal roast (boneless, seasoned, fresh frozen)
type: Class
subclass of: animal roast (boneless, seasoned, fresh frozen)
subclass of: veal roast (boneless)
definition: A boneless, seasoned and freshly frozen veal roast.
imported from: foodon.owl

deer material
type: Class
subclass of: animal material
definition: Material that derives from some deer.
imported from: foodon.owl

piece of deer
type: Class
subclass of: piece of animal
subclass of: deer material
definition: A severed part of a deer.
imported from: foodon.owl

piece of deer (raw)
type: Class
subclass of: piece of animal (raw)
subclass of: piece of deer
definition: A raw piece of deer.
imported from: foodon.owl

elk material
type: Class
subclass of: deer material
definition: Material that derives from some elk.
imported from: foodon.owl

piece of elk
type: Class
subclass of: piece of deer
subclass of: elk material
definition: A severed part of an elk.
imported from: foodon.owl

piece of elk (raw)
type: Class
subclass of: piece of deer (raw)
subclass of: piece of elk
definition: A raw piece of elk.
imported from: foodon.owl

butchery cut of elk
type: Class
subclass of: piece of elk
definition: A piece of elk meat which has been cut according to butchery practice.
imported from: foodon.owl

elk retail cut
type: Class
subclass of: butchery cut of elk
definition: An elk meat cut that is derived from a sub-primal, individual muscle cut or minor primal cut.
imported from: foodon.owl

pig material
type: Class
subclass of: pig food product
subclass of: animal material
definition: Material that derives from some pig.
imported from: foodon.owl

piece of pig (raw)
type: Class
subclass of: piece of pig
subclass of: piece of animal (raw)
subclass of: food (raw)
definition: A raw piece of pork.
imported from: foodon.owl

butchery cut of pork
type: Class
subclass of: piece of pig
definition: A piece of pork meat which has been cut according to butchery practice.
imported from: foodon.owl

pork primal cut (raw)
type: Class
subclass of: pork primal cut
definition: A raw pork primal cut.
imported from: foodon.owl

pork sub-primal cut (raw)
type: Class
subclass of: pork sub-primal cut
definition: A raw pork sub-primal cut.
imported from: foodon.owl

pork retail cut (raw)
type: Class
subclass of: pork retail cut
subclass of: animal retail cut (raw)
subclass of: piece of pig (raw)
definition: A raw pork retail cut.
imported from: foodon.owl

pork steak
type: Class
subclass of: pork meat food product
subclass of: pork retail cut
definition: A pork meat cut that has a flat-cut appearance.
imported from: foodon.owl

pork steak (raw)
type: Class
subclass of: pork retail cut (raw)
subclass of: pork steak
definition: A raw pork steak.
imported from: foodon.owl

pork roast (raw)
type: Class
subclass of: pork roast
subclass of: animal roast (raw)
subclass of: pork retail cut (raw)
definition: A raw pork roast.
imported from: foodon.owl

pork roast (boneless)
type: Class
subclass of: pork roast
subclass of: animal roast (boneless)
definition: A boneless pork roast.
imported from: foodon.owl

pork roast (boneless, raw)
type: Class
subclass of: animal roast (boneless, raw)
subclass of: pork roast (raw)
subclass of: pork roast (boneless)
definition: A raw and boneless pork roast.
imported from: foodon.owl

pork roast (boneless, seasoned, fresh frozen)
type: Class
subclass of: animal roast (boneless, seasoned, fresh frozen)
subclass of: pork roast (boneless)
definition: A boneless, seasoned and freshly frozen pork roast.
imported from: foodon.owl

pork chop (boneless)
type: Class
subclass of: pork chop
subclass of: animal chop (boneless)
definition: A boneless pork chop.
imported from: foodon.owl

pork chop (boneless, raw)
type: Class
subclass of: animal chop (boneless, raw)
subclass of: pork chop (boneless)
subclass of: pork chop (raw)
definition: A raw and boneless pork chop.
imported from: foodon.owl

animal fillet (skinless)
type: Class
subclass of: animal fillet
subclass of: piece of animal (skinless)
definition: An animal fillet that is skinless.
imported from: foodon.owl

animal fillet (skinless, raw)
type: Class
subclass of: animal fillet (raw)
subclass of: piece of animal (skinless, raw)
subclass of: animal fillet (skinless)
definition: A raw skinless animal fillet
imported from: foodon.owl

animal fillet (with skin)
type: Class
subclass of: animal fillet
subclass of: piece of animal (with skin)
definition: An animal fillet that contains skin.
imported from: foodon.owl

animal fillet (with skin, raw)
type: Class
subclass of: animal fillet (raw)
subclass of: piece of animal (with skin, raw)
subclass of: animal fillet (with skin)
definition: A raw animal fillet that contains skin.
imported from: foodon.owl

animal breast (bone-in)
type: Class
subclass of: piece of animal meat (with bone)
subclass of: animal breast
definition: An animal breast that has the bone attached to it.
imported from: foodon.owl

animal breast (bone-in, raw)
type: Class
subclass of: piece of animal meat (with bone, raw)
subclass of: animal breast (raw)
subclass of: animal breast (bone-in)
definition: A raw bone-in animal breast.
imported from: foodon.owl

turkey breast (bone-in, raw)
type: Class
subclass of: piece of turkey meat (with bone, raw)
subclass of: piece of poultry meat (with bone, raw)
subclass of: animal breast (bone-in, raw)
subclass of: turkey breast (bone-in)
subclass of: turkey breast (raw)
definition: A raw bone-in turkey breast.
imported from: foodon.owl

turkey breast (bone-in)
type: Class
subclass of: turkey breast
subclass of: piece of turkey meat (with bone)
subclass of: piece of poultry meat (with bone)
subclass of: animal breast (bone-in)
definition: A turkey breast that has the bone attached to it.
imported from: foodon.owl

fish (whole or pieces)
type: Class
subclass of: fish food product
imported from: foodon.owl
database_cross_reference: siren:F1077

fish meat (raw)
type: Class
subclass of: fish meat
definition: Fish meat that has not been cooked or preserved other than perhaps by freezing. If previously frozen, it has subsequently been thawed.
imported from: foodon.owl
database_cross_reference: siren:F1193

meat (cooked)
type: Class
subclass of: food (cooked)
subclass of: meat (prepared)
imported from: foodon.owl
database_cross_reference: siren:F5103

fish fillet (frozen)
type: Class
subclass of: fish fillet
imported from: foodon.owl
database_cross_reference: siren:F5143

mahi mahi fillet (raw)
type: Class
subclass of: mahi mahi fillet
subclass of: food (raw)
imported from: foodon.owl
database_cross_reference: siren:F5578

herring fillet (pickled)
type: Class
subclass of: herring fillet
imported from: foodon.owl
database_cross_reference: siren:F5613

fish fillet (raw)
type: Class
subclass of: fish fillet
imported from: foodon.owl
database_cross_reference: siren:F5734

meat (raw)
type: Class
subclass of: food (raw)
subclass of: meat (whole or pieces)
imported from: foodon.owl
database_cross_reference: siren:F6429

turkey breast (raw)
type: Class
subclass of: turkey breast
subclass of: turkey organ (raw)
subclass of: piece of turkey meat (raw)
subclass of: poultry breast (raw)
definition: A whole raw turkey breast.
imported from: foodon.owl
database_cross_reference: siren:F6544

fish fillet (smoked)
type: Class
subclass of: fish fillet
imported from: foodon.owl
database_cross_reference: siren:F7315

herring fillet in tomato sauce
type: Class
subclass of: herring fillet
imported from: foodon.owl
database_cross_reference: siren:F7374

tuna fillet (light meat, raw)
type: Class
subclass of: tuna fillet
imported from: foodon.owl
database_cross_reference: siren:F7811

fish fillet (with skin, raw, breaded, frozen)
type: Class
subclass of: fish fillet (breaded)
imported from: foodon.owl
database_cross_reference: siren:F8071

fish fillet (stuffed with crabmeat and shrimp)
type: Class
subclass of: fish fillet
imported from: foodon.owl
database_cross_reference: siren:F8082

fish (portion cut)
type: Class
subclass of: fish (whole or pieces)
subclass of: butchery cut of animal
imported from: foodon.owl
database_cross_reference: siren:F8311

fish steak (raw)
type: Class
subclass of: fish steak
imported from: foodon.owl
database_cross_reference: siren:F8394

fish fillet (breaded, precooked)
type: Class
subclass of: fish fillet (breaded)
imported from: foodon.owl
database_cross_reference: siren:F8405

fish fillet (in tomato sauce)
type: Class
subclass of: fish fillet
imported from: foodon.owl
database_cross_reference: siren:F8407

tuna fillet (raw)
type: Class
subclass of: tuna fillet
subclass of: fish meat (raw)
imported from: foodon.owl
database_cross_reference: siren:F9012

fish fillet (breaded)
type: Class
subclass of: fish fillet
imported from: foodon.owl
database_cross_reference: siren:F9065

fish fillet (whitemeat, skinless, raw)
type: Class
subclass of: fish fillet (raw)
imported from: foodon.owl
database_cross_reference: siren:F9079

herring fillet (smoked, and vegetables)
type: Class
subclass of: herring fillet
imported from: foodon.owl
database_cross_reference: siren:F9104

herring fillet (pickled, skinless)
type: Class
subclass of: herring fillet
imported from: foodon.owl
database_cross_reference: siren:F9210

fish fillet (breaded, frozen)
type: Class
subclass of: fish fillet (frozen)
subclass of: fish fillet (breaded)
imported from: foodon.owl
database_cross_reference: siren:F9383

herring fillet (raw)
type: Class
subclass of: herring fillet
subclass of: fish meat (raw)
imported from: foodon.owl
database_cross_reference: siren:F9517

herring fillet in lemon-flavored sauce
type: Class
subclass of: herring fillet
imported from: foodon.owl
database_cross_reference: siren:F9527

pork tenderloin (raw)
type: Class
subclass of: pork meat food product
subclass of: pork tenderloin
subclass of: piece of pig (raw)
definition: A raw pork tenderloin cut.
imported from: foodon.owl
database_cross_reference: siren:F9967

food product for animal
type: Class
subclass of: food product by consumer group
definition: Food product for animal covers foods intended for consumption by domesticated animals.
imported from: foodon.owl

beef round steak (raw)
type: Class
subclass of: beef steak (raw)
definition: A beef steak product which is raw and is cut from the outer part of the round of a cow.
imported from: foodon.owl
database_cross_reference: siren:F10591

poultry (whole or pieces)
type: Class
subclass of: poultry meat food product
imported from: foodon.owl
database_cross_reference: siren:F10611

beef chuck (raw)
type: Class
subclass of: cow food product
subclass of: beef chuck
subclass of: beef primal cut (raw)
subclass of: food (raw)
definition: A raw beef chuck cut.
imported from: foodon.owl
database_cross_reference: siren:F10939

pork shoulder (raw)
type: Class
subclass of: pork meat food product
subclass of: pork shoulder
subclass of: piece of pig (raw)
definition: A raw pork shoulder.
imported from: foodon.owl
database_cross_reference: siren:F11007

pork chop (raw)
type: Class
subclass of: pork chop food product
subclass of: pork chop
subclass of: animal chop (raw)
subclass of: pork retail cut (raw)
definition: A raw pork chop.
imported from: foodon.owl
database_cross_reference: siren:F11076

lamb chop (raw)
type: Class
subclass of: lamb meat food product
subclass of: lamb chop
subclass of: animal chop (raw)
subclass of: lamb retail cut (raw)
definition: A raw lamb chop.
imported from: foodon.owl
database_cross_reference: siren:F11091

food (raw)
type: Class
subclass of: food product
subclass of: food material by characteristic
definition: A food product that is raw.
imported from: foodon.owl
database_cross_reference: siren:F11126

beef sirloin steak (cooked)
type: Class
subclass of: beef loin
imported from: foodon.owl
database_cross_reference: siren:F11468

turkey breast (roasted)
type: Class
subclass of: turkey breast
subclass of: meat (cooked)
imported from: foodon.owl
database_cross_reference: siren:F11653

beef steak (raw)
type: Class
subclass of: beef steak
subclass of: beef retail cut (raw)
subclass of: food (raw)
definition: A raw beef steak is a flat cut of beef, with parallel faces spaced to a thickness of 1 to 5 centimetres (1⁄2 to 2 in), usually cut perpendicular to the muscle fibers, with a raw mass in common restaurant service ranging from 120 to 600 grams (4 to 21 oz). Beef steaks are usually grilled, pan fried, or broiled.
definition: A raw beef steak.
imported from: foodon.owl
database_cross_reference: siren:F11663

processed food product
type: Class
subclass of: food product
imported from: foodon.owl
database_cross_reference: siren:F11737

piece of chicken (raw)
type: Class
subclass of: piece of avian animal (raw)
subclass of: piece of chicken
subclass of: meat (raw)
definition: A raw piece of chicken.
imported from: foodon.owl
database_cross_reference: siren:F11865

meat (prepared)
type: Class
subclass of: prepared food product
subclass of: meat (whole or pieces)
imported from: foodon.owl
database_cross_reference: siren:F15665

piece of poultry meat
type: Class
subclass of: piece of poultry
subclass of: poultry (whole or pieces)
definition: A piece of meat that is derived from a poultry.
definition: Meat from a poultry bird.
imported from: foodon.owl
database_cross_reference: siren:F15883

fish fillet (quick-frozen in blocks)
type: Class
subclass of: fish fillet
imported from: foodon.owl
database_cross_reference: siren:F16681

fish fillets and minced fish (quick-frozen in blocks)
type: Class
subclass of: fish fillet
imported from: foodon.owl
database_cross_reference: siren:F16683

meat (whole or pieces)
type: Class
subclass of: mammalian meat food product
definition: A meat product is a product organized by the form of - or processing done to - its meat component (a skeletal meat part of an animal or crustacean).
imported from: foodon.owl
database_cross_reference: siren:F17170

fish fillet (unprocessed, frozen)
type: Class
subclass of: fish fillet
imported from: foodon.owl
database_cross_reference: siren:F17478

fish fillet (deep-frozen, unprocessed)
type: Class
subclass of: fish fillet (deep-frozen)
imported from: foodon.owl
database_cross_reference: siren:F17479

fish fillet (deep-frozen)
type: Class
subclass of: fish fillet
imported from: foodon.owl
database_cross_reference: siren:F17624

agency food product type
type: Class
subclass of: food material
definition: An agency food product type is a class of food product defined by an agency or consortium.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

chemical food component
type: Class
subclass of: food material
definition: Any chemical or chemical mixture that exists in a food material or was added to a food material.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

fungus
type: Class
subclass of: organism by alternate grouping
definition: A member of the group of eukaryotic organisms in the kingdom Fungi that includes unicellular microorganisms such as yeasts and molds, as well as multicellular fungi that produce familiar fruiting forms known as mushrooms.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

vertebrate animal
type: Class
subclass of: animal
definition: A vertebrate animal is any species of organism within the subphylum Vertebrata (chordates with backbones). Vertebrates represent the overwhelming majority of the phylum Chordata, with currently about 69,276 species described.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

algae
type: Class
subclass of: organism by alternate grouping
definition: An informal term for a large, diverse group of photosynthetic eukaryotic organisms that are not necessarily closely related, and is thus polyphyletic.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

organism by alternate grouping
type: Class
subclass of: environmental material
subclass of: OBI_0100026
definition: This is a hierarchy of organisms, grouped minimally in a combination of taxonomy and consumer-oriented food groups.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

lichen
type: Class
subclass of: organism by alternate grouping
definition: A composite organism that arises from algae or cyanobacteria living among filaments of multiple fungi species in a mutualistic relationship.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

liquid chemical food component
type: Class
subclass of: chemical food component
definition: A chemical food component in liquid form.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

organism material
type: Class
subclass of: material entity
definition: Anatomical or other part(s) or substances derived from plant or animal or fungal organisms.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

animal material
type: Class
subclass of: organism material
definition: Material that derives from some animal.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

egg or egg component
type: Class
subclass of: animal material
definition: Poultry, game bird or turtle eggs.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

divided into pieces, thickness <0.3 cm.
type: Class
subclass of: divided into pieces
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

medium ground and sifted (bolted)
type: Class
subclass of: medium ground
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

whole and pieces
type: Class
subclass of: physical state, shape or form, multiple
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

whole, shape achieved by forming, thickness 1.5-7 cm.
type: Class
subclass of: whole, shape achieved by forming
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

finely ground
type: Class
subclass of: disintegrated or ground
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

divided into segments or wedges
type: Class
subclass of: divided into halves, quarters or segments
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

physical state, shape or form, multiple
type: Class
subclass of: food physical quality
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

cut into short pieces
type: Class
subclass of: divided into pieces, thickness 0.3-1.5 cm.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food physical quality
type: Class
subclass of: food material characteristic
definition: The physical state of the food product (liquid, semiliquid, semisolid, or solid). Solid food products are further subdivided by shape or form. Terms are provided for products that have both liquid and solid components or that incorporate air or other gases. [FDA CFSAN 1995]
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

divided into pieces, thickness 0.3-1.5 cm.
type: Class
subclass of: divided into pieces
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

divided into halves
type: Class
subclass of: divided into halves, quarters or segments
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

medium ground
type: Class
subclass of: disintegrated or ground
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

divided or disintegrated
type: Class
subclass of: food physical quality
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

sliced, thick, between 0.5 and 1.5 cm.
type: Class
subclass of: sliced
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

divided into pieces, thickness more than 1.5 cm.
type: Class
subclass of: divided into pieces
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

whole
type: Class
subclass of: food physical quality
definition: Refers to natural or formed shape as appropriate, regardless of size, which may vary from very large (e.g., beef carcass) to very small (e.g., poppy seed, yeast cell).
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

divided into halves, quarters or segments
type: Class
subclass of: divided or disintegrated
definition: Divided into pieces whose shape is defined in relation to the shape of the whole, i.e., halves, quarters, or segments. It is used regardless of the size of the whole.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

disintegrated or ground
type: Class
subclass of: divided or disintegrated
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

sliced
type: Class
subclass of: divided into pieces, thickness 0.3-1.5 cm.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

whole, shape achieved by forming, thickness 0.3-1.5 cm.
type: Class
subclass of: whole, shape achieved by forming
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

cut into long pieces
type: Class
subclass of: divided into pieces, thickness 0.3-1.5 cm.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

sliced, thin, below 0.5 cm.
type: Class
subclass of: sliced
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

whole, shape achieved by forming, thickness bigger than 7 cm.
type: Class
subclass of: whole, shape achieved by forming
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

whole, shape achieved by forming
type: Class
subclass of: whole
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

divided into quarters
type: Class
subclass of: divided into halves, quarters or segments
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

whole, natural shape
type: Class
subclass of: whole
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

divided into pieces
type: Class
subclass of: divided or disintegrated
definition: Divided into pieces whose shape bears little or no relation to the shape of the whole. If all dimensions are below 0.2 cm., use *DISINTEGRATED OR GROUND*. Examples are: bread slice, cubed beef, sliced carrot, cut green beans, apple ring, shredded cabbage or cheese.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

whole, shape achieved by forming, thickness <0.3 cm.
type: Class
subclass of: whole, shape achieved by forming
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

not heat-treated
type: Class
subclass of: extent of food heat treatment
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

extent of food heat treatment
type: Class
subclass of: food material characteristic
definition: Used to broadly characterize a food product based on the extent of heat applied. Heat treatment affects the flavor and textural characteristics of a food and thus consumer preparation time. Heat treatment causes chemical changes and/or reduction of enzyme and of microbial activity and thus affects food safety and shelflife. Specifics of preparation are covered by *G. COOKING METHOD* and *H. TREATMENT APPLIED*. [FDA CFSAN 1995]
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

fully heat-treated
type: Class
subclass of: heat-treated
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

partially heat-treated
type: Class
subclass of: heat-treated
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

heat-treated
type: Class
subclass of: extent of food heat treatment
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

heat-treated, multiple components, different degrees of treatment
type: Class
subclass of: extent of food heat treatment
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food cooking
type: Class
subclass of: food transformation process
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

cooking by dry heat
type: Class
subclass of: food cooking
definition: Cooked at moderate to high levels of heat in which no liquid is added and only small amounts of fat may be added to prevent sticking.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food baking
type: Class
subclass of: cooking by dry heat
definition: Cooked without moisture, covered or uncovered, in an oven.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

broiling or grilling
type: Class
subclass of: cooking by dry heat
definition: Cooked without moisture under or over intense direct heat.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

charcoal broiling
type: Class
subclass of: broiling or grilling
definition: Cooked without moisture over direct heat from a charcoal fire.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

griddle cooking
type: Class
subclass of: cooking by dry heat
definition: Cooking on a flat surface at medium heat with only a sufficient amount of fat used to prevent sticking.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

cooked by popping
type: Class
subclass of: cooking by dry heat
definition: Cooking by agitating the food over a dry, high heat source, resulting in exploding.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food toasting
type: Class
subclass of: cooking by dry heat
definition: Cooking with direct heat until the surface of the food is browned, usually associated with bread or sandwiches.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

cooking by microwave
type: Class
subclass of: food cooking
definition: Cooking in a microwave oven.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

cooking by moist heat
type: Class
subclass of: food cooking
definition: Cooking in varying amounts of water, water-based liquid or steam.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

cooking in water or water-based liquid
type: Class
subclass of: cooking by moist heat
definition: A process of cooking by moist heat which is effected by hot water or water-based liquid in a container.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

boiling in container
type: Class
subclass of: cooking in water or water-based liquid
definition: A cooking in water or water-based liquid process in which the liquid is boiling.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

boiling and then draining
type: Class
subclass of: boiling in container
definition: Cooked in boiling water at 212 degrees F.; water that is not absorbed into the food product is discarded after cooking.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

boiling in large amount of liquid
type: Class
subclass of: boiling and then draining
definition: Cooked in boiling water at 212 degrees F. Liquid to solid ratio is greater than 2:1.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

boiling in small amount of liquid
type: Class
subclass of: boiling and then draining
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

boiling without draining
type: Class
subclass of: boiling in container
definition: Cooked in boiling water at 212 degrees F. The water incorporates itself into the product being cooked or is not discarded when cooking is complete.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

cooking by braising
type: Class
subclass of: cooking in water or water-based liquid
definition: Browned initially in fat and then tightly covered and cooked over low heat in a small amount of water.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

cooking by simmering
type: Class
subclass of: cooking in water or water-based liquid
definition: Cooking in a moderate amount of liquid at just below the boiling point.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

cooking in steam
type: Class
subclass of: cooking by moist heat
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

steaming with pressure
type: Class
subclass of: cooking in steam
definition: Cooked in a pressure cooker.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

steaming without pressure
type: Class
subclass of: cooking in steam
definition: Cooked suspended above boiling water.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

cooking with fat or oil
type: Class
subclass of: food cooking
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

cooking with added fat or oil
type: Class
subclass of: cooking with fat or oil
definition: Cooked by adding fat or oil to those foods that do not contain fat or oil that would render during the cooking process.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

cooking in small amount of fat or oil
type: Class
subclass of: cooking with added fat or oil
definition: Cooked with sufficient fat or oil to coat and moisten the food being prepared, but not cooked in enough fat or oil to immerse the food.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

sautéing
type: Class
subclass of: cooking in small amount of fat or oil
definition: Cooking in a very small amount of very hot fat, turning and browning the food on all sides.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

stir-frying
type: Class
subclass of: cooking in small amount of fat or oil
definition: Cooked by frying foods quickly over high heat, stirring constantly. Only enough cooking oil is used to coat the bottom of the pan.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

deep-frying process
type: Class
subclass of: cooking with added fat or oil
definition: Cooked in hot fat or oil deep enough to immerse the food entirely.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

cooking with inherent fat or oil
type: Class
subclass of: cooking with fat or oil
definition: Cooked in fat or oil rendered from the food being prepared.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

heating container by immersion in water or steam
type: Class
subclass of: heating container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

heating container
type: Class
subclass of: food cooking
definition: A food cooking method in which heat is transferred to the outside of a container.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

heating container in double boiler
type: Class
subclass of: heating container
definition: Heating a container that is placed in another container filled with boiling water.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

heating container by water bath
type: Class
subclass of: heating container
definition: Heating a container that is placed in another container filled with water kept near the boiling point.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

shallow frying process
type: Class
subclass of: cooking with added fat or oil
definition: A chinese cooking technique similar to sauteing in which thick slices or chunks of floured or battered ingredients are slow seared over moderate to low heat.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

steeping
type: Class
subclass of: cooking in water or water-based liquid
definition: Extracting flavor and other components from food sources by immersion in water, usually at near-boiling temperature.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food reheating
type: Class
subclass of: food cooking
definition: A process to bring an already fully cooked product to serving temperature.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food reheating by microwave
type: Class
subclass of: food reheating
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food reheating by dry heat
type: Class
subclass of: food reheating
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food reheating by boil-in-bag
type: Class
subclass of: food reheating
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food reheating in pan or cooking utensil
type: Class
subclass of: food reheating
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

double steaming
type: Class
subclass of: boiling in container
definition: A Chinese cooking technique to prepare delicate food such as bird nests, shark fins, etc. The food is covered with water and put in a covered ceramic jar and the jar is then steamed for several hours.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

rotisserie roasting
type: Class
subclass of: broiling or grilling
definition: Rotisserie is a style of roasting where meat is skewered on a spit and revolves over a flame or other heat source.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

searing
type: Class
subclass of: broiling or grilling
definition: Searing is a technique used in grilling, roasting, braising, sautéing, etc. that cooks the surface of the food at high temperature so that a brownish crust forms by Maillard reaction and denaturation of proteins.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

blind baking
type: Class
subclass of: food baking
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

pressure frying process
type: Class
subclass of: cooking with added fat or oil
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

lactic acid fermentation
type: Class
subclass of: carbohydrate fermentation
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

proteolytic fermentation
type: Class
subclass of: single component food fermentation
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

lactic acid-other agent fermentation
type: Class
subclass of: multi-component food fermentation
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food treatment process
type: Class
subclass of: food transformation process
definition: Used to specifically characterize a food product based on the treatment or processes applied to the product or any indexed ingredient. The processes include adding, substituting or removing components or modifying the food or component, e.g., through fermentation.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

microbial/enzymatic modification process
type: Class
subclass of: food modification process
definition: A food modification process by microbial or enzymatic action which results in molecular changes in any food component.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

alcohol-acetic acid fermentation
type: Class
subclass of: carbohydrate fermentation
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

lipolytic fermentation
type: Class
subclass of: single component food fermentation
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

multi-component food fermentation
type: Class
subclass of: food fermentation
definition: A food fermentation process in which significant amounts of two or more components (i.e. carbohydrate and protein, carbohydrate and fat, protein and fat, or all three) are modified through microbial processes. Enzymatic or other biological processes may also be involved.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

physical/chemical modification process
type: Class
subclass of: food modification process
definition: A food modification process where physical or chemical changes are effected in any food ingredient through a physical or non-enzymatic chemical process.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food modification process
type: Class
subclass of: food treatment process
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

sodium added claim
type: Class
subclass of: mineral added claim
definition: A claim that sodium has been added to an edible product.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

mineral added claim
type: Class
subclass of: vitamin- or mineral-related claim
definition: A claim that a mineral has been added to an edible product.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

calcium added claim
type: Class
subclass of: mineral added claim
definition: A claim that calcium has been added to an edible product.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

iron added claim
type: Class
subclass of: mineral added claim
definition: A claim that iron has been added to an edible product.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

potassium added claim
type: Class
subclass of: mineral added claim
definition: A claim that potassium has been added to an edible product.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

chloride added claim
type: Class
subclass of: mineral added claim
definition: A claim that chloride has been added to an edible product.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

acidification process
type: Class
subclass of: food component addition process
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food parboiling process (grain)
type: Class
subclass of: cooking by moist heat
subclass of: physical/chemical modification process
definition: Treated with moist heat to soften the grain and to transfer nutrients from the bran to the endosperm.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

phosphorus added claim
type: Class
subclass of: mineral added claim
definition: A claim that phosphorus has been added to an edible product.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food component addition process
type: Class
subclass of: food treatment process
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

single component food fermentation
type: Class
subclass of: food fermentation
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

alcohol fermentation
type: Class
subclass of: carbohydrate fermentation
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food component separation process
type: Class
subclass of: food treatment process
definition: A component separation process at the very least removes one component from an initial entity. The removed component may be captured as a process output for reuse if not destroyed in the process of removal.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

curing or aging
type: Class
subclass of: multi-component food fermentation
definition: Modified through complex enzymatic or microbial processes resulting in physicochemical changes in particular with respect to texture, flavor, color or shelf life of the food product. Such changes may be induced by the introduction of certain chemicals, such as sodium sulfite, salt, sugar, or other substances, such as phenolics, in dry or liquid form and often aided by smoke. Cheese should always be indexed by the appropriate narrower term under *LACTIC ACID-OTHER AGENT FERMENTED*.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

carbohydrate fermentation
type: Class
subclass of: single component food fermentation
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

zinc added claim
type: Class
subclass of: mineral added claim
definition: A claim that a zinc has been added to an edible product.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

curing or aging < 2 weeks
type: Class
subclass of: curing or aging
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

curing or aging 2 weeks to 1 month
type: Class
subclass of: curing or aging
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

curing or aging 1 to 2 months
type: Class
subclass of: curing or aging
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

curing or aging 2 to 4 months
type: Class
subclass of: curing or aging
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

curing or aging 4 to 6 months
type: Class
subclass of: curing or aging
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

curing or aging 6 to 12 months
type: Class
subclass of: curing or aging
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

curing or aging 12 months or over
type: Class
subclass of: curing or aging
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

acetic acid fermentation
type: Class
subclass of: carbohydrate fermentation
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

bacterial food-curing process
type: Class
subclass of: lactic acid-other agent fermentation
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food surface bacterial curing
type: Class
subclass of: bacterial food-curing process
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food interior bacterial curing
type: Class
subclass of: bacterial food-curing process
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

mold food-curing process
type: Class
subclass of: lactic acid-other agent fermentation
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food surface mold curing
type: Class
subclass of: mold food-curing process
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food interior mold curing
type: Class
subclass of: mold food-curing process
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

seed roasting
type: Class
subclass of: food baking
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

marinading
type: Class
subclass of: alcohol-acetic acid fermentation
subclass of: acidification process
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

magnesium added claim
type: Class
subclass of: mineral added claim
definition: A claim that magnesium has been added to an edible product.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

copper added claim
type: Class
subclass of: mineral added claim
definition: A claim that copper has been added to an edible product..
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

manganese added claim
type: Class
subclass of: mineral added claim
definition: A claim that manganese has been added to an edible product.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

selenium added claim
type: Class
subclass of: mineral added claim
definition: A claim that selenium has been added to an edible product.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

chromium added claim
type: Class
subclass of: mineral added claim
definition: A claim that chromium has been added to an edible product.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

molybdenum added claim
type: Class
subclass of: mineral added claim
definition: A claim that molybdenum has been added to an edible product.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

fluoride added claim
type: Class
subclass of: mineral added claim
definition: A claim that fluoride has been added to an edible product.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

preservation by adding chemicals
type: Class
subclass of: chemical food preservation process
definition: Preservation by adding chemical preservatives (e.g., sorbic acid, sodium benzoate, BHT, calcium proprionate) to suppress or inhibit undesirable microorganisms or enzyme activity.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food sterilization before filling
type: Class
subclass of: food sterilization by heating
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food salting
type: Class
subclass of: physical/chemical modification process
subclass of: preservation by reducing water activity
subclass of: preservation by adding inorganic acids or salts
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food smoking
type: Class
subclass of: food modification process
subclass of: preservation by reducing water activity
definition: Smoking is the process of flavoring, browning, cooking, or preserving food by exposing it to smoke from burning or smoldering material, most often wood.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food preservation process
type: Class
subclass of: food treatment process
definition: The methods contributing to the prevention or retardation of microbial, enzymatic or oxidative spoilage and thus to the extension of shelf life. Index all methods for which information is available, even if a corresponding descriptor has already been used in *H. TREATMENT APPLIED*. Preservation descriptors refer to the finished food as a whole with these exceptions: (1) if the components of a multi-component food, such as cream pie, are preservation by different methods, index all methods; (2) if chemical preservatives are declared on the label, always index them even if it is known that the preservative was introduced through or is only present in a component or ingredient of the food; and (3) if the preservation method for an ingredient is declared on the label (such as brie cheese made from pasteurized milk) index it. Also use *INGREDIENT preservation by THERMAL PROCESSING* or *INGREDIENT preservation by IRRADIATION* when ingredients have been pasteurized, ultrapasteurized, sterilized or irradiated.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

preservation by treatment with chemicals
type: Class
subclass of: chemical food preservation process
definition: Preservation by immersing in or spraying with liquids (e.g., sulfite solutions) or surrounding with gases (e.g., ethylene oxide, propylene oxide or sulfur dioxide) to destroy undesirable microorganisms or inactivate enzymes. Diffusion and chemical reaction may create a residue in the food product that contributes to continuing preservation.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

chemical food preservation process
type: Class
subclass of: food preservation process
definition: Preservation by use of chemical to destroy, suppress or inhibit undesirable microorganisms or enzyme activity.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food sterilization after filling
type: Class
subclass of: food sterilization by heating
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

preservation by storage in modified atmosphere
type: Class
subclass of: food preservation process
definition: Preservation by storage in an atmosphere in which the concentrations of oxygen and carbon dioxide are different from those in air. This reduces microbial and enzymatic activity; often used commercially in conjunction with refrigeration (e.g., refrigerated rail cars) for fresh meat and produce.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

drying under reduced pressure
type: Class
subclass of: artificial heat drying
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

sterilization by irradiation
type: Class
subclass of: preservation by ionizing radiation
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food sterilization by hot filling and cooling
type: Class
subclass of: food sterilization before filling
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

surface pasteurization or disinfection by ultraviolet irradiation
type: Class
subclass of: preservation by irradiation
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

dehydration or drying
type: Class
subclass of: food evaporation process
subclass of: preservation by reducing water activity
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

heat drying process
type: Class
subclass of: dehydration or drying
definition: Drying by heat.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

pasteurization by irradiation
type: Class
subclass of: preservation by ionizing radiation
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

heat treatment food preservation
type: Class
subclass of: food preservation process
definition: Preservation by the use of high temperature for a time sufficient to reduce or destroy undesirable microorganisms and enzyme activity. [FDA CFSAN 1995]
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food filtration
type: Class
subclass of: food component separation process
subclass of: food preservation process
definition: Preservation by filtering out yeasts and molds, generally followed by aseptic packaging. FDA CFSAN 1995
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

preservation by ionizing radiation
type: Class
subclass of: preservation by irradiation
definition: Preservation by irradiation, primarily by gamma radiation.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food sterilization by heating
type: Class
subclass of: heat treatment food preservation
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

osmotic dehydration
type: Class
subclass of: dehydration or drying
definition: Reduction of water in the product by osmosis.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

aseptic filling and sealing of food
type: Class
subclass of: food sterilization before filling
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food slow freezing
type: Class
subclass of: food freezing
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food sterilization by hot filling, held hot and cooling
type: Class
subclass of: food sterilization before filling
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

freeze-drying
type: Class
subclass of: drying under reduced pressure
definition: Dehydration by sublimation under reduced pressure while frozen. Usually the product is not stored frozen.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food chilling
type: Class
subclass of: chilling or freezing
definition: Cooling and keeping at a temperature between 30°F and 45°F (-1°C and 7°C). Regarding food preservation regulations, the temperature range depends on national legislation.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food quick freezing
type: Class
subclass of: food freezing
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

spray-drying
type: Class
subclass of: artificial heat drying
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

shelf-drying under normal pressure
type: Class
subclass of: drying under normal pressure
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

pasteurization by heating
type: Class
subclass of: heat treatment food preservation
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food freezing
type: Class
subclass of: chilling or freezing
definition: Preservation by freezing a food product and keeping it at a temperature below the freezing point (20-30 degrees F) without regard to the product's physical state.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food brining
type: Class
subclass of: food salting
definition: Immersed in a salt brine strong enough to suppress enzyme activity and growth of undesirable organisms.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

preservation by irradiation
type: Class
subclass of: food preservation process
definition: Preservation by the use of radiation to destroy or suppress undesirable microorganisms or enzyme activity.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food dry salting
type: Class
subclass of: food salting
definition: Packed in dry salt in sufficient quantity to suppress enzyme activity or growth of undesirable organisms.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

drum-drying
type: Class
subclass of: drying under normal pressure
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

natural heat drying
type: Class
subclass of: heat drying process
definition: Dried by natural heat, usually through exposure to the sun. Includes field-dried products such as grains and dry beans. These products are included also if they have been artificially dried to return them to normal dry state, e.g. grain that has been artificially dried after harvest.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

chilling or freezing
type: Class
subclass of: food preservation process
definition: Preservation by cooling and storage at low temperature (chilling at around 0-5°C (32 to 41°F), freezing at -18°C (0°F)) to prevent or retard microbial or enzymatic spoilage.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

drying under normal pressure
type: Class
subclass of: artificial heat drying
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

artificial heat drying
type: Class
subclass of: heat drying process
definition: Drying by the application of artificial heat.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

preservation by reducing water activity
type: Class
subclass of: food preservation process
definition: Preservation method that lowers the water activity (relative humidity) of a food product. This is accomplished by using mechanical dehydration equipment, by natural drying, by adding salt, sugar or other agents to the food or by surface drying during a refrigeration or freezing operation. This method of preservation may be used in conjunction with other preservation methods such as preservation by thermal processing.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

preservation by adding sugar
type: Class
subclass of: preservation by reducing water activity
definition: Preservation by adding sugar, sugar syrup or by partial inversion of disaccharides until the sugar concentration is high enough to prevent growth of microorganisms.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food sterilization at ultra high temperature (UHT)
type: Class
subclass of: aseptic filling and sealing of food
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

ultra pasteurization (UP) by heat
type: Class
subclass of: pasteurization by heating
definition: When used to describe a dairy product, means that such product shall have been thermally processed at or above 138° C (280° C) for at least 2 seconds, either before or after packaging so as to produce a product that has extended shelf life under refrigerated conditions (21 CFR 131.3 (c)). Used to describe liquid egg products that also have been thermally processed, but at a different temperature than for milk products. The egg product will have an extended shelf life under refrigerated conditions.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

preservation by adding acid
type: Class
subclass of: preservation by adding chemicals
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

sous vide cooking
type: Class
subclass of: food cooking
definition: Sous-vide, French for "under vacuum", is a method of cooking that is intended to maintain the integrity of ingredients by heating them for an extended period of time in vacuum sealed plastic pouches at relatively low temperatures. Food is cooked for a long time, sometimes well over 24 hours. Unlike cooking in a slow cooker, sous-vide cooking uses airtight plastic bags placed in hot water well below boiling point (usually around 60°C or 140°F).
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

preservation of food component by heat treatment
type: Class
subclass of: heat treatment food preservation
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

ingredient preservation by irradiation
type: Class
subclass of: preservation by irradiation
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

preservation by adding spices or extracts
type: Class
subclass of: food preservation process
definition: Preservation by adding spices or extracts (e.g. garlic, onion, horseradish, paprika) to suppress or inhibit undesirable micro-organisms, enzyme activity, or oxidative changes.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

preservation by adding inorganic acids or salts
type: Class
subclass of: preservation by adding acid
definition: Preservation by adding inorganic acids or salts (e.g. SO2, H2SO4, KNO4, NaNO3) to suppress or inhibit undesirable micro-organisms or enzyme activity.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

preservation by adding organic acids or salts
type: Class
subclass of: preservation by adding acid
definition: Preservation by adding organic acids or salts (e.g. lactic acid, acetic acid, salicylic acid) to suppress or inhibit undesirable micro organisms or enzyme activity.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

preservation by adding antibiotics
type: Class
subclass of: preservation by adding chemicals
definition: Preservation by adding antibiotics (e.g. nisin, tylosine, subtlin, bacitracin, chlorotetracyclin, oxytetracyclin) to kill micro organisms or stop their growth.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food ultra-filtration
type: Class
subclass of: food filtration
definition: Separation of colloidal or very fine solid materials by filtration through microporous or semipermeable mediums. Membranes have pores in the range 2-20 nm diameter.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

pasteurization by heat after filling
type: Class
subclass of: filling conditions for pasteurization
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

pasteurization by heat before filling
type: Class
subclass of: filling conditions for pasteurization
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

ultra high pressure sterilization
type: Class
subclass of: food preservation process
definition: The process of holding food at a high pressure, normally greater than 1000 bar, which leads to sterilization. Example: Fruit juice, jam.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

preservation by electron accelerator radiation
type: Class
subclass of: preservation by irradiation
definition: Treated by electron accelerator radiation, for example to kill insects in cereals.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

disinfection by irradiation
type: Class
subclass of: preservation by ionizing radiation
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

drying by radiation
type: Class
subclass of: dehydration or drying
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

drying by microwave radiation
type: Class
subclass of: drying by radiation
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

drying by infrared heat radiation
type: Class
subclass of: drying under normal pressure
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

drying under increased pressure
type: Class
subclass of: artificial heat drying
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

concentration by reverse osmosis
type: Class
subclass of: drying under reduced pressure
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

sun drying
type: Class
subclass of: natural heat drying
definition: Drying by exposure to the sun. Example: cereals, spices, vegetables.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food cryogenic freezing
type: Class
subclass of: food quick freezing
definition: Frozen very rapidly by means of refrigerating agents such as liquid nitrogen or carbon dioxide. Example: lobster frozen in liquid nitrogen.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food storage with refrigerating agent process
type: Class
subclass of: food chilling
definition: The process of food storage involving an accompanying refrigerating agent.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

inert atmosphere storage process
type: Class
subclass of: preservation by storage in modified atmosphere
definition: Preservation by storage in inert gases (e.g. nitrogen) to suppress or inhibit undesirable micro-organism growth, oxidation activity, etc.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

vaccume storage process
type: Class
subclass of: preservation by storage in modified atmosphere
definition: Storing under reduced pressure (e.g. 1.3-2 kPa) in order to suppress or inhibit undesirable micro organism growth, oxidation activity, etc.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food blanching
type: Class
subclass of: food cooking
subclass of: physical/chemical modification process
subclass of: heat treatment food preservation
definition: Blanching is a cooking process wherein a food, usually a vegetable or fruit, is scalded in boiling water, removed after a brief, timed interval, and finally plunged into iced water or placed under cold running water (shocking or refreshing) to halt the cooking process. Blanching foods helps reduce quality loss over time. People often use blanching as a pre-treatment prior to freezing, drying, or canning—heating vegetables or fruits to inactivate enzymes, modify texture, remove the peel, and wilt tissue. Blanching is also utilized to preserve color, flavor, and nutritional value. The process has three stages: preheating, blanching, and cooling. The most common blanching methods for vegetables/fruits are hot water and steam, while cooling is either done using cold water or cool air.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

controlled atmosphere storage process
type: Class
subclass of: preservation by storage in modified atmosphere
definition: Storage of fruits and vegetables in an atmosphere in which the concentrations of oxygen, carbon dioxide (and often nitrogen) are different from those in air and at a low temperature. All three (four) factors are controlled at the desired levels in order to suppress the fruits' and vegetables' natural respiration.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food micro-filtration
type: Class
subclass of: food filtration
definition: Microfiltration is used to remove undesirable micro-organisms and molecules. The membranes have pore diameters from 10 to 10000 nm. Micro-filtration is often used instead of pateurisation, e.g. in the brewing industry.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

high temperature short time (HTST) pasteurization
type: Class
subclass of: pasteurization by heating
definition: High Temperature Short Time (HTST) pasteurization is one of the most common methods of pasteurization , which uses metal plates and hot water to raise milk temperatures to at least 72° C (161° F) for not less than 15 seconds, followed by rapid cooling.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

higher heat shorter time (HHST) pasteurization
type: Class
subclass of: pasteurization by heating
definition: Higher Heat Shorter Time (HHST) is a process similar to HTST pasteurization, but it uses slightly different equipment and higher temperatures (83 - 127° C) for a shorter time.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

ultra high temperature (UHT) pasteurization
type: Class
subclass of: pasteurization by heating
definition: Typically involves heating milk or cream to 135° to 150° C (275° to 302° F) for 1 or 2 seconds. The milk is then packaged in sterile, hermetically-sealed (airtight) containers (aspetic filling) and can be stored without refrigeration for up to 90 days. After opening, spoilage times for UHT products are similar to those of conventionally pasteurized products.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

filling conditions for pasteurization
type: Class
subclass of: pasteurization by heating
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

low-temperature-long-time (LTLT) pasteurization
type: Class
subclass of: pasteurization by heating
definition: A pasteurization by heating process which uses low heat for a longer time to kill pathogenic bacteria.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

packed in vinegar with sugar
type: Class
subclass of: packed in vinegar
definition: In the U.S., grain strength is calculated as 10 times the acid content expressed as acetic acid. For example, 40 grain vinegar = 4% acetic acid; 120 grain vinegar = 12% acetic acid. [Technically Speaking about Vinegar - A food technologist's guide to vinegar, The Vinegar Institute, 5775 Peachtree-Dunwoody Road, Atlanta, Georgia 30342, USA].
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

packed in edible medium
type: Class
subclass of: food packing medium
definition: Packed in a medium that is also a food product. Ingredients that are introduced through the packing medium are indexed as appropriate under *INGREDIENT OR FOOD ADDED* found in *H. TREATMENT APPLIED*.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

packed in heavily sweetened liquid
type: Class
subclass of: packed in sweetened liquid
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

packed in lightly sweetened water or juice
type: Class
subclass of: packed in sweetened liquid
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

packed in gas other than air
type: Class
subclass of: food packing medium
definition: Packed in a modified atmosphere that contributes to preservation (e.g., applesauce packed with nitrogen in the head space or tuna salad sandwich packed in nitrogen-containing polyethylene wrapper). Also applicable to large-scale applications in shipping or storage (e.g., meat under carbon dioxide in a rail car).
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

packed with aerosol propellant
type: Class
subclass of: food packing medium
definition: Packed with a gas that is liquified under pressure and that upon release of the pressure propels and aerates the food product. See 21 CFR 173.345 and 173.360 for substances used.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

packed in vegetable juice
type: Class
subclass of: packed in edible medium
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

packed in water
type: Class
subclass of: packed in edible medium
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

packed in salt brine
type: Class
subclass of: packed in edible medium
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

packed in sweetened brine
type: Class
subclass of: packed in salt brine
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food packing medium
type: Class
subclass of: food contact material
user interface label: food packing medium
definition: The medium in which the food is packed for preservation and handling or the medium surrounding homemade foods, e.g., peaches cooked in sugar syrup. The packing medium may provide a controlled environment for the food. It may also serve to improve palatability and consumer appeal.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

packed in vegetable oil
type: Class
subclass of: packed in fat or oil
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

packed in acidified salt brine
type: Class
subclass of: packed in salt brine
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

packed in sweetened liquid
type: Class
subclass of: packed in edible medium
definition: Packed in sweetened water or in sweetened and/or concentrated fruit juice. For single-strength unsweetened fruit juice, use *PACKED IN FRUIT JUICE*. When the specific terms under *PACKED IN SWEETENED LIQUID* are used, the statement seen on the product label should be used for indexing. For additional information, see 21 CFR 145.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

packed in extra heavily sweetened liquid
type: Class
subclass of: packed in sweetened liquid
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

packed in fat or oil
type: Class
subclass of: packed in edible medium
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

vacuum-packed
type: Class
subclass of: food packing medium
definition: Packed in a container under high vacuum (26-29 in.).
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

packed in carbon dioxide
type: Class
subclass of: packed in gas other than air
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

packed in vinegar
type: Class
subclass of: packed in edible medium
definition: In the U.S., grain strength is calculated as 10 times the acid content expressed as acetic acid. For example, 40 grain vinegar = 4% acetic acid; 120 grain vinegar = 12% acetic acid. [Technically Speaking about Vinegar - A food technologist's guide to vinegar, The Vinegar Institute, 5775 Peachtree-Dunwoody Road, Atlanta, Georgia 30342, USA].
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

packed in slightly sweetened water or juice
type: Class
subclass of: packed in sweetened liquid
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

packed in nitrogen
type: Class
subclass of: packed in gas other than air
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

packed in gas mixture
type: Class
subclass of: packed in gas other than air
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

packed in gravy or sauce, dairy or egg component
type: Class
subclass of: packed in gravy or sauce
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

packed in gravy or sauce
type: Class
subclass of: packed in edible medium
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

packed in gelatin
type: Class
subclass of: packed in edible medium
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

packed in gravy or sauce, meat
type: Class
subclass of: packed in gravy or sauce
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

packed in gravy or sauce, vegetable
type: Class
subclass of: packed in gravy or sauce
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

packed in olive oil
type: Class
subclass of: packed in vegetable oil
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

packed in fruit juice
type: Class
subclass of: packed in edible medium
definition: Packed in unsweetened single strength juice or juice prepared from concentrated fruit juice and water; if sweetener is added to the fruit juice, use the appropriate term under *PACKED IN SWEETENED LIQUID*.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

packed in vinegar and oil
type: Class
subclass of: packed in fat or oil
subclass of: packed in vinegar
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

packed in broth
type: Class
subclass of: packed in edible medium
definition: Packed in broth; includes meat, poultry or seafood packed in its' own juice.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

packed in cream or milk
type: Class
subclass of: packed in edible medium
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

packed in ink
type: Class
subclass of: packed in edible medium
definition: Packed in squid or octopus ink.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

packed in gravy or sauce, fruit
type: Class
subclass of: packed in gravy or sauce
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

packed in animal fat or oil
type: Class
subclass of: packed in fat or oil
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

packed in vinegar with sugar and salt
type: Class
subclass of: packed in vinegar
definition: In the U.S., grain strength is calculated as 10 times the acid content expressed as acetic acid. For example, 40 grain vinegar = 4% acetic acid; 120 grain vinegar = 12% acetic acid. [Technically Speaking about Vinegar - A food technologist's guide to vinegar, The Vinegar Institute, 5775 Peachtree-Dunwoody Road, Atlanta, Georgia 30342, USA].
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food packaging
type: Class
subclass of: food contact material
definition: A food contact material which encloses the food and can be in the type of a container, packaging or wrapping.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

plastic squeeze bottle or tube, top lined with foil
type: Class
subclass of: plastic squeeze bottle or tube
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

plastic squeeze bottle or tube
type: Class
subclass of: plastic container, flexible or film
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

plastic squeeze bottle or tube, top lined with laminate
type: Class
subclass of: plastic squeeze bottle or tube
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

plastic squeeze bottle or tube, unlined top
type: Class
subclass of: plastic squeeze bottle or tube
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

plastic squeeze bottle or tube, top lined with cork
type: Class
subclass of: plastic squeeze bottle or tube
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

glass container, tinless steel lid
type: Class
subclass of: glass container, metal lid
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

bimetal container
type: Class
subclass of: metal container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

glass container, plastic lid, paper lining
type: Class
subclass of: glass container, plastic lid or stopper
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

laminate tube, ends lined with laminate
type: Class
subclass of: laminate tube
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

laminate tube, ends lined with foil
type: Class
subclass of: laminate tube
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

laminate tube, ends lined with cork
type: Class
subclass of: laminate tube
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

paperboard tube with lid or ends
type: Class
subclass of: paperboard container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

textile or fabric stocking or casing
type: Class
subclass of: textile or fabric container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

ceramic or earthenware bottle
type: Class
subclass of: ceramic or earthenware container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

ceramic or earthenware crock or jar
type: Class
subclass of: ceramic or earthenware container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

ceramic or earthenware container
type: Class
subclass of: container or wrapping by material
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

paper bag, sack or pouch, plastic liner
type: Class
subclass of: paper bag, sack or pouch
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

paper bag, sack or pouch, foil liner
type: Class
subclass of: paper bag, sack or pouch
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

paper bag, sack or pouch, laminate liner
type: Class
subclass of: paper bag, sack or pouch
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

paper bag, sack or pouch
type: Class
subclass of: paperboard or paper container
definition: A soft-sided paper container that is used as a bag.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

glass container, cork stopper
type: Class
subclass of: glass container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

plastic tray or pan, laminate cover or wrapping
type: Class
subclass of: plastic tray or pan
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

plastic tray or pan, aluminum foil cover or wrapping
type: Class
subclass of: plastic tray or pan
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

plastic tray or pan, plastic cover or wrapping
type: Class
subclass of: plastic tray or pan
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

plastic tray or pan, paper wrapping
type: Class
subclass of: plastic tray or pan
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

plastic tray or pan
type: Class
subclass of: plastic container, rigid or semirigid
definition: A flat plastic container with raised edges that is used to carry things.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

laminate tube, unlined aluminum ends
type: Class
subclass of: laminate tube
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

plastic wrapper
type: Class
subclass of: plastic container, flexible or film
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

paperboard tray with wrapper
type: Class
subclass of: paperboard or paper container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

glass container
type: Class
subclass of: container or wrapping by material
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

plastic tray or pan, cardboard cover
type: Class
subclass of: plastic tray or pan
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

glass container, aluminum lid
type: Class
subclass of: glass container, metal lid
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

glass container, plastic lid, laminate lining
type: Class
subclass of: glass container, plastic lid or stopper
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

glass container, plastic lid or stopper
type: Class
subclass of: glass container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

glass container, aluminum lid, plastic lining
type: Class
subclass of: glass container, aluminum lid
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

glass container, plastic lid, plastic lining
type: Class
subclass of: glass container, plastic lid or stopper
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

plastic shrink-pack
type: Class
subclass of: plastic container, flexible or film
definition: A thin, transparent plastic film that adheres to the surface and itself, and is used to wrap objects and materials in an air-tight manner.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

laminate tube, unlined plastic ends
type: Class
subclass of: laminate tube
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

aluminum tube, unlined plastic top
type: Class
subclass of: aluminum tube
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

glass container, plastic lid, aluminum foil lining
type: Class
subclass of: glass container, plastic lid or stopper
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

paper bag, sack or pouch, paper liner
type: Class
subclass of: paper bag, sack or pouch
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

paperboard container with laminate liner
type: Class
subclass of: paperboard container with liner
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

glass container, tin-plated steel lid
type: Class
subclass of: glass container, metal lid
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

laminate bag or pouch
type: Class
subclass of: laminate container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

plastic boil-in-bag
type: Class
subclass of: plastic bag or pouch
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

paperboard container with plastic liner
type: Class
subclass of: paperboard container with liner
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

paperboard container with aluminum foil liner
type: Class
subclass of: paperboard container with liner
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

paperboard container with paper liner
type: Class
subclass of: paperboard container with liner
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

tinless steel plate container
type: Class
subclass of: steel plate container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

paperboard molded pack
type: Class
subclass of: paperboard or paper container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

metal container
type: Class
subclass of: container or wrapping by material
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

paperboard container, waxed
type: Class
subclass of: paperboard container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

paperboard container, plastic coated
type: Class
subclass of: paperboard container, surface treated
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

paperboard container with window
type: Class
subclass of: paperboard container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

paperboard container with liner
type: Class
subclass of: paperboard container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

paperboard container
type: Class
subclass of: paperboard or paper container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

textile or fabric container
type: Class
subclass of: container or wrapping by material
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

textile or fabric bag
type: Class
subclass of: textile or fabric container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

paperboard or paper container
type: Class
subclass of: container or wrapping by material
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

aluminum tray or pan, plastic cover or wrapping
type: Class
subclass of: aluminum tray or pan
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

aluminum tray or pan, cardboard cover
type: Class
subclass of: aluminum tray or pan
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

aluminum tray or pan, laminate cover or wrapping
type: Class
subclass of: aluminum tray or pan
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

aluminum tray or pan, aluminum foil cover or wrapping
type: Class
subclass of: aluminum tray or pan
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

aluminum tray or pan, paper wrapping
type: Class
subclass of: aluminum tray or pan
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

aluminum tray or pan
type: Class
subclass of: aluminum container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

plastic bag or pouch
type: Class
subclass of: plastic container, flexible or film
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

laminate tube
type: Class
subclass of: laminate container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

aluminum tube
type: Class
subclass of: aluminum container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

aluminum tube, top lined with laminate
type: Class
subclass of: aluminum tube
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

aluminum tube, top lined with foil
type: Class
subclass of: aluminum tube
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

aluminum tube, top lined with cork
type: Class
subclass of: aluminum tube
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

plastic container
type: Class
subclass of: container or wrapping by material
definition: Corresponds to FSTA Thesaurus Packaging 2.2.1 Plastic container.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

paper wrapper
type: Class
subclass of: paperboard or paper container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

wood container
type: Class
subclass of: container or wrapping by material
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

aluminum can, drum or barrel
type: Class
subclass of: aluminum container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

tin plate container
type: Class
subclass of: steel plate container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

wood box
type: Class
subclass of: wood container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

wood drum
type: Class
subclass of: wood container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

wood barrel, cask or wheel
type: Class
subclass of: wood container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

plastic container, molded or bubble pack
type: Class
subclass of: plastic container, rigid or semirigid
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

laminate container
type: Class
subclass of: container or wrapping by material
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

aluminum container
type: Class
subclass of: metal container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

plastic container, rigid or semirigid, tin-plated steel lid
type: Class
subclass of: plastic container, rigid or semirigid
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

plastic container, rigid or semirigid
type: Class
subclass of: plastic container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

plastic container, rigid or semirigid, tinless steel lid
type: Class
subclass of: plastic container, rigid or semirigid
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

plastic container, flexible or film
type: Class
subclass of: plastic container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

plastic container, rigid or semirigid, plastic lid
type: Class
subclass of: plastic container, rigid or semirigid
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

plastic container, rigid or semirigid, aluminum lid
type: Class
subclass of: plastic container, rigid or semirigid
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

steel plate container
type: Class
subclass of: metal container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

aluminum foil wrapper
type: Class
subclass of: aluminum container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

paperboard container with foil or liner overwrap
type: Class
subclass of: paperboard container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

plastic container, blow-molded
type: Class
subclass of: plastic container, molded or bubble pack
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

can, bottle or jar
type: Class
subclass of: container or wrapping by form
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

container or wrapping by form
type: Class
subclass of: food packaging
definition: Classification corresponding to FSTA Thesaurus Packaging 3.1 Package Types
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

ampul
type: Class
subclass of: container or wrapping by form
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

bag, sack or pouch
type: Class
subclass of: container or wrapping by form
definition: According to FSTA Thesaurus Packaging 3.1 package types, includes boil-in bag, carrier bag, flat bag, inner bag, retort pouch, shipping bag, valve bag, and valve sack
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

drum (container)
type: Class
subclass of: container or wrapping by form
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

envelope
type: Class
subclass of: container or wrapping by form
definition: A flexible container of distinctive construction and closure features used in the dispensing of tablet or powdered prescription medication; it is typically constructed of film or paper that may be coated or laminated to protect the contents [CFSAN Thesaurus].
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

tube
type: Class
subclass of: container or wrapping by form
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

vial
type: Class
subclass of: container or wrapping by form
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

container or wrapping by material
type: Class
subclass of: food packaging
definition: Classification corresponding to FSTA Thesaurus Packaging 2.1.2 Material
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

bottle or jar
type: Class
subclass of: container or wrapping by form
definition: A container which is a bottle or a jar.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

can (container)
type: Class
subclass of: can, bottle or jar
definition: A container which is made of a thin metal and and is used for the distribution or storage of goods.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

leaf wrapper
type: Class
subclass of: container or wrapping by material
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

husk wrapper
type: Class
subclass of: container or wrapping by material
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

capsule
type: Class
subclass of: container or wrapping by form
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

multicontainer package
type: Class
subclass of: container or wrapping by form
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

wax container
type: Class
subclass of: container or wrapping by material
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

glass container, metal lid
type: Class
subclass of: glass container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

wrapper, material unspecified
type: Class
subclass of: container or wrapping by form
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

edible container
type: Class
subclass of: container or wrapping by material
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

box
type: Class
subclass of: container or wrapping by form
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

bottle
type: Class
subclass of: can, bottle or jar
subclass of: bottle or jar
definition: A narrow-necked container typically made of glass or plastic that is used to store and transport liquids.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

jar
type: Class
subclass of: can, bottle or jar
subclass of: bottle or jar
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

drawn can
type: Class
subclass of: can (container)
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

three-part can
type: Class
subclass of: can (container)
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

jug or demijohn
type: Class
subclass of: bottle or jar
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

pail
type: Class
subclass of: container or wrapping by form
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

sealing/closing element
type: Class
subclass of: food packaging
definition: Classification corresponding to FSTA Thesaurus Packaging 3.2.4 Sealing/closing means
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

adhesive
type: Class
subclass of: sealing/closing element
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

multicomponent adhesive
type: Class
subclass of: adhesive
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

multicomponent adhesive, no solvent
type: Class
subclass of: multicomponent adhesive
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

multicomponent adhesive, organic solvent
type: Class
subclass of: multicomponent adhesive
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

multicomponent adhesive, water soluble
type: Class
subclass of: multicomponent adhesive
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

one component adhesive
type: Class
subclass of: adhesive
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

one component adhesive, organic solvent
type: Class
subclass of: one component adhesive
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

one component adhesive, water soluble
type: Class
subclass of: one component adhesive
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

thermoplastic adhesive
type: Class
subclass of: adhesive
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

glass stopper
type: Class
subclass of: stopper
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

plastic stopper
type: Class
subclass of: stopper
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

polyethylene plug
type: Class
subclass of: plastic stopper
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

polypropylene plug
type: Class
subclass of: plastic stopper
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

polyvinyl chloride plug
type: Class
subclass of: plastic stopper
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

plastic screw cap or lid
type: Class
subclass of: screw cap or lid
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

plastic screw cap/pilfer proof
type: Class
subclass of: plastic screw cap or lid
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

crown cap
type: Class
subclass of: closing cap or lid
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

metal screw cap or lid
type: Class
subclass of: screw cap or lid
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

metal screw cap/pilfer proof
type: Class
subclass of: metal screw cap or lid
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

wooden cork
type: Class
subclass of: stopper
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

seal/gasket
type: Class
subclass of: sealing/closing element
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

cork wood gasket
type: Class
subclass of: seal/gasket
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

metal gasket
type: Class
subclass of: seal/gasket
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

plastic gasket
type: Class
subclass of: seal/gasket
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

rubber gasket
type: Class
subclass of: seal/gasket
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

steel solder
type: Class
subclass of: seal/gasket
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

tin solder
type: Class
subclass of: seal/gasket
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

ceramic or earthenware bottle, coloured
type: Class
subclass of: ceramic or earthenware bottle
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

ceramic or earthenware bottle, uncoloured
type: Class
subclass of: ceramic or earthenware bottle
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

ceramic or earthenware jar, coloured
type: Class
subclass of: ceramic or earthenware crock or jar
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

ceramic or earthenware jar, uncoloured
type: Class
subclass of: ceramic or earthenware crock or jar
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

glass container, uncoloured
type: Class
subclass of: glass container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

glass container, uncoloured, light weight
type: Class
subclass of: glass container, uncoloured
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

glass container, uncoloured, normal weight
type: Class
subclass of: glass container, uncoloured
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

glass container, uncoloured, strengthened
type: Class
subclass of: glass container, uncoloured
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

glass container, uncoloured, covered/protected
type: Class
subclass of: glass container, uncoloured
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

glass container, coloured
type: Class
subclass of: glass container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

glass container, coloured, light weight
type: Class
subclass of: glass container, coloured
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

glass container, coloured, normal weight
type: Class
subclass of: glass container, coloured
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

glass container, coloured, strengthened
type: Class
subclass of: glass container, coloured
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

glass container, coloured, covered/protected
type: Class
subclass of: glass container, coloured
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

aluminum box
type: Class
subclass of: aluminum container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

aluminium box, plastic-coated
type: Class
subclass of: aluminum box
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

aluminium box, varnished
type: Class
subclass of: aluminum box
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

aluminium can, drum or barrel, plastic coated
type: Class
subclass of: aluminum can, drum or barrel
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

aluminium can, drum or barrel, varnished
type: Class
subclass of: aluminum can, drum or barrel
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

aluminium foil wrapper, coated for heat sealing
type: Class
subclass of: aluminum foil wrapper
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

aluminium foil-paper wrapper
type: Class
subclass of: aluminum foil wrapper
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

aluminum coextruded with paper
type: Class
subclass of: aluminium foil-paper wrapper
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

aluminum combined with paper and plastic
type: Class
subclass of: aluminium foil-paper wrapper
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

aluminum combined with regenerated cellulose
type: Class
subclass of: aluminium foil-paper wrapper
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

laminated aluminum combination with paper
type: Class
subclass of: aluminium foil-paper wrapper
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

stainless steel container
type: Class
subclass of: steel plate container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

steel plate container tinned one side
type: Class
subclass of: tin plate container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

steel plate container tinned both sides
type: Class
subclass of: tin plate container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

varnished tin-plate container
type: Class
subclass of: tin plate container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

natural polymer container
type: Class
subclass of: container or wrapping by material
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

casein resin
type: Class
subclass of: natural polymer container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

cellulose film
type: Class
subclass of: natural polymer container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

acetate cellulose film
type: Class
subclass of: cellulose film
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

butyrate cellulose film
type: Class
subclass of: cellulose film
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

propyonate cellulose film
type: Class
subclass of: cellulose film
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

regenerated cellulose film
type: Class
subclass of: natural polymer container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

regenerated cellulose film, coated
type: Class
subclass of: regenerated cellulose film
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

regenerated cellulose film, coloured
type: Class
subclass of: regenerated cellulose film
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

rubber container
type: Class
subclass of: natural polymer container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

paper container, treated
type: Class
subclass of: paper bag, sack or pouch
definition: A paper container that has been treated with an antimicrobial agent or preservative chemical.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

lacquered paper container
type: Class
subclass of: paper container, treated
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

saturated (immersed) paper container
type: Class
subclass of: paper container, treated
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

waxed paper container
type: Class
subclass of: paper container, treated
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

paper container, untreated
type: Class
subclass of: paper bag, sack or pouch
definition: A paper container that has not been treated with any agents.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

bleached paper container
type: Class
subclass of: paper container, untreated
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

kraft or brown paper container
type: Class
subclass of: paper container, untreated
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

grease proof paper container
type: Class
subclass of: paper container, untreated
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

imitation grease proof paper container
type: Class
subclass of: paper container, untreated
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

tissue paper container
type: Class
subclass of: paper container, untreated
definition: Porous, wet-strength paper, e.g. tea bag.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

paperboard container, untreated
type: Class
subclass of: paperboard container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

paperboard container, surface treated
type: Class
subclass of: paperboard container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

paperboard container, surface treated both sides
type: Class
subclass of: paperboard container, surface treated
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

paperboard container, surface treated inside
type: Class
subclass of: paperboard container, surface treated
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

paperboard container, surface treated outside
type: Class
subclass of: paperboard container, surface treated
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

paper combined material
type: Class
subclass of: paper wrapper
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

impregnated/micro waxed paper
type: Class
subclass of: paper wrapper
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

metalized paper wrapper
type: Class
subclass of: paper wrapper
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

metalized paper coextruded with plastic
type: Class
subclass of: metalized paper wrapper
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

metalized paper laminated with plastic
type: Class
subclass of: metalized paper wrapper
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

metalized paper laminated with treated paper
type: Class
subclass of: metalized paper wrapper
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

paper-aluminium foil-plastic wrapper
type: Class
subclass of: paper wrapper
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

coextruded paper-aluminium-plastic wrapper
type: Class
subclass of: paper-aluminium foil-plastic wrapper
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

laminated paper-aluminium-plastic wrapper
type: Class
subclass of: paper-aluminium foil-plastic wrapper
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

paper-paper combination
type: Class
subclass of: paper wrapper
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

paper-plastic combination
type: Class
subclass of: paper wrapper
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

laminate paper coextruded with plastic
type: Class
subclass of: paper-plastic combination
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

plastic container, according to type of plastic
type: Class
subclass of: plastic container
definition: Corresponds to FSTA Thesaurus Packaging 2.2.1 'Type of plastic'
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

thermoplastic sheet or container
type: Class
subclass of: plastic container, according to type of plastic
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

polyamide container
type: Class
subclass of: thermoplastic sheet or container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

acryl-nitrile container
type: Class
subclass of: polyamide container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

nylon 11 container
type: Class
subclass of: polyamide container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

nylon 6,6 container
type: Class
subclass of: polyamide container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

polycarbonate container
type: Class
subclass of: polyester container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

polyester container
type: Class
subclass of: thermoplastic sheet or container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

polyester container, glass fibre strengthened
type: Class
subclass of: polyester container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

linear polyester container
type: Class
subclass of: polyester container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

polyethylene container
type: Class
subclass of: polyolefin container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

high density polyethylene container
type: Class
subclass of: polyethylene container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

low density polyethylene container
type: Class
subclass of: polyethylene container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

linear low density polyethylene container
type: Class
subclass of: low density polyethylene container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

low density polyethylene container, treated
type: Class
subclass of: low density polyethylene container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

polymethylmethacrylate container
type: Class
subclass of: polyolefin container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

polypropylene container
type: Class
subclass of: polyolefin container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

biaxial oriented polypropylene container
type: Class
subclass of: polypropylene container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

oriented polypropylene container
type: Class
subclass of: polypropylene container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

polystyrene container
type: Class
subclass of: thermoplastic sheet or container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

polyvinyl chloride container
type: Class
subclass of: thermoplastic sheet or container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

unplasticized polyvinyl chloride container
type: Class
subclass of: polyvinyl chloride container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

plasticized polyvinyl chloride container
type: Class
subclass of: polyvinyl chloride container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

polyvinylidene chloride container
type: Class
subclass of: thermoplastic sheet or container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

thermosetting polymer container
type: Class
subclass of: plastic container, according to type of plastic
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

alkyd resin container
type: Class
subclass of: thermosetting polymer container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

amin resin container
type: Class
subclass of: thermosetting polymer container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

aniline-formaldehyde container
type: Class
subclass of: amin resin container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

carbamide-formaldehyde container
type: Class
subclass of: amin resin container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

diciandiamide-formaldehyde container
type: Class
subclass of: amin resin container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

epoxy resin container
type: Class
subclass of: thermosetting polymer container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

phenonile resin container
type: Class
subclass of: thermosetting polymer container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

polyester resin container
type: Class
subclass of: thermosetting polymer container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

plastic container, combined material
type: Class
subclass of: plastic container, according to type of plastic
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

metallized polymer container
type: Class
subclass of: plastic container, combined material
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

metallized polyamide container
type: Class
subclass of: metallized polymer container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

metallized polyester container
type: Class
subclass of: metallized polymer container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

polyethylene (high density) - polyamide container
type: Class
subclass of: plastic container, combined material
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

polyethylene (high density) - nylon 11 container
type: Class
subclass of: polyethylene (high density) - polyamide container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

polyethylene (high density) - polyester container
type: Class
subclass of: plastic container, combined material
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

polyethylene (high density) - polypropylene container
type: Class
subclass of: plastic container, combined material
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

polyethylene (low density) - polyamide container
type: Class
subclass of: plastic container, combined material
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

polyethylene (low density) - nylon 11 container
type: Class
subclass of: polyethylene (low density) - polyamide container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

polyethylene (low density) - polyester container
type: Class
subclass of: plastic container, combined material
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

polyethylene (low density) - polyethylene (high density) container
type: Class
subclass of: plastic container, combined material
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

polyethylene (low density) - polyethylene (low density) container
type: Class
subclass of: plastic container, combined material
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

polyethylene (low density) - polypropylene container
type: Class
subclass of: plastic container, combined material
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

polyethylene - regenerated cellulose container
type: Class
subclass of: plastic container, combined material
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

polyethylene - vinyl copolymer container
type: Class
subclass of: plastic container, combined material
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

polyvinyl chloride - polyvinylidene chloride container
type: Class
subclass of: plastic container, combined material
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

natural textile container
type: Class
subclass of: textile or fabric container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

animal hair container
type: Class
subclass of: natural textile container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

bass fibre container
type: Class
subclass of: natural textile container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

asbestos container
type: Class
subclass of: natural textile container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

cotton container
type: Class
subclass of: natural textile container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

leaf fibre container
type: Class
subclass of: natural textile container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

polymer base textile container
type: Class
subclass of: textile or fabric container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

polyamide textile container
type: Class
subclass of: polymer base textile container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

polyester textile container
type: Class
subclass of: polymer base textile container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

polyolefin textile container
type: Class
subclass of: polymer base textile container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

boil-in bag
type: Class
subclass of: bag, sack or pouch
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

inner bag
type: Class
subclass of: bag, sack or pouch
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

closing cap or lid
type: Class
subclass of: sealing/closing element
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

closing capsule
type: Class
subclass of: closing cap or lid
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

screw cap or lid
type: Class
subclass of: closing cap or lid
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

peel-off lid
type: Class
subclass of: closing cap or lid
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

stopper
type: Class
subclass of: sealing/closing element
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

recycled paperboard container
type: Class
subclass of: paperboard container, untreated
definition: Example: egg box.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

polyethylene terephthalate (pet) container
type: Class
subclass of: polyester container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

polyolefin container
type: Class
subclass of: thermoplastic sheet or container
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food product contact surface
type: Class
subclass of: food contact material
definition: The specific container or coating materials in direct contact with the food. [FDA CFSAN 1995]
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

beverage can enamel surface
type: Class
subclass of: food-grade enamel-coated surface
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

noncarbonated beverage can enamel surface
type: Class
subclass of: beverage can enamel surface
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

carbonated beverage can enamel surface
type: Class
subclass of: beverage can enamel surface
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

beer beverage can enamel surface
type: Class
subclass of: beverage can enamel surface
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food-grade wax surface
type: Class
subclass of: food contact surface from human-made material
definition: Wax may be applied directly as a coating to the food product or may be used as a container material. Examples include wax-coated cheese, wax-coated cucumber, waxed fiberboard container, etc.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

enamel surface for fruit (f-enamel)
type: Class
subclass of: food-grade enamel-coated surface
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

polyethylene surface
type: Class
subclass of: food-grade plastic surface
definition: PE
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

enamel surface for citrus fruit
type: Class
subclass of: food-grade enamel-coated surface
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

milk enamel surface for milk
type: Class
subclass of: food-grade enamel-coated surface
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

enamel surface for meat
type: Class
subclass of: food-grade enamel-coated surface
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

polypropylene surface
type: Class
subclass of: food-grade plastic surface
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

polystyrene surface
type: Class
subclass of: food-grade plastic surface
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

enamel surface for seafood
type: Class
subclass of: food-grade enamel-coated surface
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food-grade enamel-coated surface
type: Class
subclass of: food contact surface from human-made material
definition: A surface consisting of a coating that contains a specially prepared vehicle, instead of raw oil. Sometimes referred to as varnish or lacquer.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

saran surface
type: Class
subclass of: Polyvinylidene chloride surface
definition: Trade name of polyvinylidene chloride copolymer film. Chief packaging uses are in film and in coatings for other flexible substrates such as cellophane and paper.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

mylar surface
type: Class
subclass of: polyester surface
definition: Trade name of polyester used in the usa.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

nylon surface
type: Class
subclass of: food-grade plastic surface
definition: A generic term for a class of polyamides containing repeating amide groups connected by methylene units. The most common types used in food industry are ny-lon-66 and nylon-11.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

Cryovac bag plastic surface
type: Class
subclass of: Polyvinylidene chloride surface
definition: A surface of a Cryovac bag, a shrinkable version of pvdc used for vacuum packaging, e.g. of red meat.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

Polyvinylidene chloride surface
type: Class
subclass of: food-grade plastic surface
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

enamel surface for corn (c-enamel)
type: Class
subclass of: food-grade enamel-coated surface
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

cellophane
type: Class
subclass of: latex surface
definition: Cellophane is a thin, transparent sheet made of regenerated cellulose.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

pliofilm surface
type: Class
subclass of: food-grade plastic surface
definition: A rubber hydrochloride, first introduced as a packaging film in 1936 in the U.S.A.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

polyester surface
type: Class
subclass of: food-grade plastic surface
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

cellulose acetate surface
type: Class
subclass of: food-grade plastic surface
definition: CA: thermoplastic material made by the esterification of cellulose with acetic anhydride and acetic acid.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food-grade wood surface
type: Class
subclass of: food contact surface from natural material
definition: A surface made out of food-grade wood.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food-grade plastic surface
type: Class
subclass of: food contact surface from human-made material
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

polyvinyl chloride surface
type: Class
subclass of: food-grade plastic surface
definition: PVC
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food-grade ceramic surface
type: Class
subclass of: food contact surface from human-made material
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food-grade paper product surface
type: Class
subclass of: food contact surface from human-made material
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food-grade glass surface
type: Class
subclass of: food contact surface from human-made material
definition: A surface made of food-grade glass.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food-grade metal surface
type: Class
subclass of: food contact surface from human-made material
definition: A surface made of food-grade metal
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

aluminum surface
type: Class
subclass of: food-grade metal surface
definition: A surface made out of aluminum metal
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food-grade tin surface
type: Class
subclass of: food-grade metal surface
definition: A surface made out of food-grade tin metal.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food-grade steel surface
type: Class
subclass of: food-grade metal surface
definition: A surface made of food-grade steel.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food-grade textile surface
type: Class
subclass of: food contact surface from human-made material
definition: A surface of a food-grade textile
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food-grade cork surface
type: Class
subclass of: food contact surface from natural material
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food-grade ash
type: Class
subclass of: food contact surface from natural material
definition: Ash which is incorporated into the surface of a food such as cheese.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

leaf food contact surface
type: Class
subclass of: food contact surface from natural material
definition: A plant leaf used as a food contact surface.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

husk food contact surface
type: Class
subclass of: food contact surface from natural material
definition: A plant husk used as a food contact surface.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food contact surface from natural material
type: Class
subclass of: food product contact surface
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food contact surface from human-made material
type: Class
subclass of: food product contact surface
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

latex surface
type: Class
subclass of: Polyvinylidene chloride surface
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

teflon surface
type: Class
subclass of: food-grade plastic surface
definition: A surface of Teflon, a trade name for a polymer used to provide better protection and longer life to porous metals (nickel alloys) in coextruded sheets and films.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

edible casing
type: Class
subclass of: food contact surface from natural material
definition: A very thin edible covering, either natural or some form of a synthetic, that is used to enclose ground meat and other ingredients.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food-grade natural-based polymer surface
type: Class
subclass of: food contact surface from natural material
definition: A surface made of polymer extracted from nature.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

laboratory animal as food consumer
type: Class
subclass of: animal as food consumer
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food fish as consumer
type: Class
subclass of: food animal as consumer
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

pet fish as consumer
type: Class
subclass of: pet animal as consumer
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

non-food animal as food consumer
type: Class
subclass of: animal as food consumer
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

sheep or goat as consumer
type: Class
subclass of: animal as food consumer
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food animal as consumer
type: Class
subclass of: animal as food consumer
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

fat special claim
type: Class
subclass of: nutrition-related claim
definition: All narrower term definitions extracted from 58 Federal Register 2302, January 6, 1993, part 101.62(b).
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

poultry as consumer
type: Class
subclass of: food animal as consumer
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

cattle as consumer
type: Class
subclass of: animal as food consumer
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

infant or toddler as food consumer
type: Class
subclass of: child as food consumer, less than four years
definition: Food produced and marketed to supply the particular dietary needs of normal infants (21 CFR 105.65) or normal toddlers (age 1 to 2 years). Junior foods are included with the strained foods for infants up to one year. Foods fall in this category only if the label bears a statement such as 'baby food', 'strained food', 'junior food' or 'toddler food'.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

animal as food consumer
type: Class
subclass of: food consumer group
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

dietary claim
type: Class
subclass of: label claim
definition: Renamed from *FOOD FOR SPECIAL DIETARY USE* [LanguaL 2008]. These descriptors are used either for foods intended for special dietary use as defined in 21 CFR 105 or for foods that have special characteristics indicated in the name or labeling. Such claims would include 'low calorie', 'low cholesterol', 'diet' or 'dietetic', etc. Prior to february 1992, this category of descriptors was limited solely to food for adult humans. The category is now used in conjunction with any appropriate *CONSUMER GROUP* descriptor(s), for example, 'low sugar baby food' would be indexed by *INFANT OR TODDLER FOOD* as well as by *LOW SUGARS FOOD*.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

horse as consumer
type: Class
subclass of: animal as food consumer
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

human as food consumer
type: Class
subclass of: food consumer group
definition: Food produced and marketed for human use.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

pig as consumer
type: Class
subclass of: food animal as consumer
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

pet cat as consumer
type: Class
subclass of: pet animal as consumer
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

pet animal as consumer
type: Class
subclass of: non-food animal as food consumer
definition: Pet animals as a consumer group; products are labeled accordingly.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

pet bird as consumer
type: Class
subclass of: pet animal as consumer
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

pet dog as consumer
type: Class
subclass of: pet animal as consumer
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

low energy food claim
type: Class
subclass of: no or reduced energy claim
definition: A claim that a food is low in energy, and any claim likely to have the same meaning for the consumer, may only be made where the product does not contain more than 40 kcal (170 kJ)/100 g for solids or more than 20 kcal (80 kJ)/100 ml for liquids. For table-top sweeteners the limit of 4 kcal (17 kJ)/portion, with equivalent sweetening properties to 6 g of sucrose (approximately 1 teaspoon of sucrose), applies [REGULATION (EC) No 1924/2006 Corrigendum 2007-01-18]. Food having 40 calories or less per amount customarily consumed (and per 50 grams of food if the amount customarily consumed is small). Meals and main dishes contain 120 calories or less per 100 grams of food [US FDA]
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

reduced energy food claim
type: Class
subclass of: no or reduced energy claim
definition: A claim that a food is energy-reduced, and any claim likely to have the same meaning for the consumer, may only be made where the energy value is reduced by at least 30 %, with an indication of the characteristic(s) which make(s) the food reduced in its total energy value [REGULATION (EC) No 1924/2006 Corrigendum 2007-01-18]. Food having at least 25% fewer calories per amount customarily consumed from the calories of a comparable food product. The complarable food may not be 'low calorie' [US FDA].
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

salt or sodium free claim
type: Class
subclass of: no or reduced salt or sodium claim
definition: A claim that a food is sodium-free or salt-free, and any claim likely to have the same meaning for the consumer, may only be made where the product contains no more than 0,005 g of sodium, or the equivalent value for salt, per 100 g. [REGULATION (EC) No 1924/2006 Corrigendum 2007-01-18]. Food having less than 5 milligrams of salt or sodium per amount customarily consumed (or for meals and main dishes, less than 5 miligrams of salt or sodium per labeled serving). Such foods must not contain an ingredient that is salt or sodium or generally understood to comtain salt or sodium except where the ingredient listed is footnoted '*adds a trivial amount of {salt or sodium}' [US FDA]
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

very low salt or sodium claim
type: Class
subclass of: no or reduced salt or sodium claim
definition: A claim that a food is very low in sodium/salt, and any claim likely to have the same meaning for the consumer, may only be made where the product contains no more than 0,04 g of sodium, or the equivalent value for salt, per 100 g or per 100 ml. This claim shall not be used for natural mineral waters and other waters [REGULATION (EC) No 1924/2006 Corrigendum 2007-01-18]. Food having 35 milligrams or less salt or sodium per amount customarily consumed (and per 50 grams if the amount customarily consumed is small). Meals and main dishes contain 35 milligrams or less salt or sodium per 100 grams of food [US FDA]
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

reduced salt or sodium claim
type: Class
subclass of: no or reduced salt or sodium claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

low salt or sodium claim
type: Class
subclass of: no or reduced salt or sodium claim
definition: A claim that a food is low in sodium/salt, and any claim likely to have the same meaning for the consumer, may only be made where the product contains no more than 0,12 g of sodium, or the equivalent value for salt, per 100 g or per 100 ml. For waters, other than natural mineral waters falling within the scope of Directive 80/777/EEC, this value should not exceed 2 mg of sodium per 100 ml [REGULATION (EC) No 1924/2006 Corrigendum 2007-01-18]. Food having 140 milligrams or less salt or sodium per amount customarily consumed. Meals and main dishes have 140 milligrams or less salt or sodium per 100 grams food [US FDA]
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

low fat food
type: Class
subclass of: no or reduced fat claim
definition: A claim that a food is low in fat, and any claim likely to have the same meaning for the consumer, may only be made where the product contains no more than 3 g of fat per 100 g for solids or 1,5 g of fat per 100 ml for liquids (1,8 g of fat per 100 ml for semi-skimmed milk). [REGULATION (EC) No 1924/2006 Corrigendum 2007-01-18]. Food having 3 grams of fat or less per amount customarily consumed (and per 50 grams of food if the amount customarily consumed is small). Meals and main dishes contain 3 grams or less fat per 100 grams of food and not more than 30% of calories from fat [US FDA].
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

reduced fat food
type: Class
subclass of: no or reduced fat claim
definition: Food containing at least 25% less fat per amount customarily consumed from the fat content of a comparable food product. The comparable food may not be 'low fat'.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

cholesterol special claim
type: Class
subclass of: nutrition-related claim
definition: All narrower term definitions extracted from 58 Federal Register 2302, January 6, 1993, part 101.62(d).
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

cholesterol free claim
type: Class
subclass of: no or reduced cholesterol claim
definition: Food having less than 2 milligrams cholesterol per amount customarily consumed (or for meals and main dishes, less than 2 milligrams cholesterol per labeled serving). Such food must contain no ingredient that contains cholesterol except where the ingredient listed has been footnoted '*adds a trivial amount of cholesterol'. If the food contains less than 2 milligrams cholesterol per amount customarily consumed by special processing and the total fat exceeds 13 grams cholesterol per amount or labeled serving, the amount of cholesterol must be 'Substantially less' (25%) than in a comparable food with significant market share (5% of market).
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

low in cholesterol claim
type: Class
subclass of: no or reduced cholesterol claim
definition: Food having 20 miligrams or less cholesterol per amount customarily consumed (and per 50 grams of food if the amount customarily consumed is small). Meals and main dishes contain 20 milligrams or less cholesterol per 100 grams of food. If the food qualifies by special processing and total fat exceeds 13 grams per amount and labeled serving, the amount of cholesterol must be 'substantially less' (25%) than in a comparable food with significant market share (5% of market).
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

reduced cholesterol claim
type: Class
subclass of: no or reduced cholesterol claim
definition: Food having at least 25% less cholesterol per amount customarily consumed from the cholesterol content of a comparable food product. The comparable food may not be 'low cholesterol'.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

energy special claim
type: Class
subclass of: nutrition-related claim
definition: All narrower term definitions are extracted from 58 Federal Register 2302, January 6, 1993, part 101.60(b) and from Corrigendum to Regulation (EC) No 1924/2006 of the European Parliament and of the Council of 20 December 2006 on nutrition and health claims made on foods.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

salt or sodium special claim
type: Class
subclass of: nutrition-related claim
definition: All narrower term definitions extracted from 58 Federal Register 2032, January 6, 1993, part 101.61.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

high fiber food
type: Class
subclass of: fiber special claim
definition: A claim that a food is high in fibre, and any claim likely to have the same meaning for the consumer, may only be made where the product contains at least 6 g of fibre per 100 g or at least 3 g of fibre per 100 kcal [REGULATION (EC) No 1924/2006 Corrigendum 2007-01-18]. Food that is promoted as a source of or as high in dietary fiber (often called simply 'fiber').
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

fiber special claim
type: Class
subclass of: nutrition-related claim
definition: Food that is promoted as being either high or low in dietary fiber (often called simply 'fiber'). If the food is not low in total fat, total fat must be stated in conjunction with claim such as 'more fiber'.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

fat free food
type: Class
subclass of: no or reduced fat claim
definition: A claim that a food is fat-free, and any claim likely to have the same meaning for the consumer, may only be made where the product contains no more than 0,5 g of fat per 100 g or 100 ml. However, claims expressed as "X % fat-free" shall be prohibited [REGULATION (EC) No 1924/2006 Corrigendum]. Food having less than 0.5 grams fat per amount customarily consumed. Meals and main dishes have less than 0.5 grams fat per labeled serving. Such foods must contain no ingredient that is fat or understood to contain fat except when the ingredient listed has been footnoted '*adds a trivial amount of fat'.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

energy free food claim
type: Class
subclass of: no or reduced energy claim
definition: A claim that a food is energy-free, and any claim likely to have the same meaning for the consumer, may only be made where the product does not contain more than 4 kcal (17 kJ)/100 ml. For table-top sweeteners the limit of 0.4 kcal (1.7 kJ)/portion, with equivalent sweetening properties to 6 g of sucrose (approximately 1 teaspoon of sucrose), applies [REGULATION (EC) No 1924/2006 Corrigendum 2007-01-18]. Food having less than 5 calories per amount customarily consumed. Calorie amount is not defined for meals or main dishes [US FDA]
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

sugars free food
type: Class
subclass of: no sugars added claim
definition: A claim that a food is sugars-free, and any claim likely to have the same meaning for the consumer, may only be made where the product contains no more than 0,5 g of sugars per 100 g or 100 ml [REGULATION (EC) No 1924/2006 Corrigendum 2007-01-18]. Food having less than 0.5 grams sugars per amount customarily consumed (or for meals and main dishes, less than 0.5 grams sugars per labeled serving). Such foods nust contain no ingredient that is a sugar or generally understood to contain sugars except where the ingredient listed is footnoted '*adds a trivial amount of sugars' [US FDA]
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

low in saturated fat food
type: Class
subclass of: saturated fat-related claim
definition: A claim that a food is low in saturated fat, and any claim likely to have the same meaning for the consumer, may only be made if the sum of saturated fatty acids and trans-fatty acids in the product does not exceed 1.5 g per 100 g for solids or 0.75 g/100 ml for liquids and in either case the sum of saturated fatty acids and trans-fatty acids must not provide more than 10 % of energy. [REGULATION (EC) No 1924/2006 Corrigendum 2007-01-18]. Food having one gram or less saturated fat per amount customarily consumed and 15% or less of calories from saturated fat. Meals and main dishes contain one gram or less saturated fat per 100 grams food and less than 10% of calories from saturated fat.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

general label claim
type: Class
subclass of: label claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

high energy food claim
type: Class
subclass of: energy special claim
definition: [REGULATION (EC) No 1924/2006 Corrigendum 2007-01-18]
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

sugars special claim
type: Class
subclass of: nutrition-related claim
subclass of: sweetener-related claim
definition: All narrower term definitions extracted from 58 Federal Register 2302, January 6, 1993, part 101.60(c).
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

low sugars food
type: Class
subclass of: no or reduced sugar claim
definition: A claim that a food is low in sugars, and any claim likely to have the same meaning for the consumer, may only be made where the product contains no more than 5 g of sugars per 100 g for solids or 2,5 g of sugars per 100 ml for liquids [REGULATION (EC) No 1924/2006 Corrigendum 2007-01-18]. Not defined in U.S. Federal Register; no basis for a recommended intake.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

low fiber food
type: Class
subclass of: fiber special claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

nutrition-related claim
type: Class
subclass of: dietary claim
definition: As defined in Corrigendum to Regulation (EC) No 1924/2006 of the European Parliament and of the Council of 20 December 2006 on nutrition and health claims made on foods, "claim" means any message or representation, which is not mandatory under Community or national legislation, including pictorial, graphic or symbolic representation, in any form, which states, suggests or implies that a food has particular characteristics; specificly, "nutrition claim" means any claim which states, suggests or implies that a food has particular beneficial nutritional properties due to: (a) the energy (calorific value) it (i) provides; (ii) provides at a reduced or increased rate; or (iii) does not provide; and/or (b) the nutrients or other substances it (i) contains; (ii) contains in reduced or increased proportions; or (iii) does not contain.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

no or reduced energy claim
type: Class
subclass of: energy special claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

no or reduced fat claim
type: Class
subclass of: fat special claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

no fat added claim
type: Class
subclass of: no or reduced fat claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

saturated fat-related claim
type: Class
subclass of: fat special claim
definition: All narrower term definitions extracted from 58 Federal Register 2302, January 6, 1993, part 101.62(c).
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

no animal fat added claim
type: Class
subclass of: saturated fat-related claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

no tropical oils added claim
type: Class
subclass of: saturated fat-related claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

no palm oil added claim
type: Class
subclass of: saturated fat-related claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

rich in fiber claim
type: Class
subclass of: fiber special claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

naturally rich in fiber claim
type: Class
subclass of: rich in fiber claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

no or reduced salt or sodium claim
type: Class
subclass of: salt or sodium special claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

no salt added claim
type: Class
subclass of: no or reduced salt or sodium claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

salt free claim
type: Class
subclass of: salt or sodium free claim
definition: Food having less than 5 milligrams salt per amount customarily consumed (or for meals and main dishes less than 5 milligrams salt per labeled serving). Such food must contain no ingredient that is salt or generally understood to contain salt except where the ingredient listed is footnoted '*adds a trivial amount of salt'.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

low salt claim
type: Class
subclass of: low salt or sodium claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

very low salt claim
type: Class
subclass of: very low salt or sodium claim
definition: Food having less than 35 milligrams of salt per serving and per 100 grams of food. (U.S. proposed)
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

reduced salt claim
type: Class
subclass of: reduced salt or sodium claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

naturally sodium-free food
type: Class
subclass of: sodium free claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

no or reduced sugar claim
type: Class
subclass of: sugars special claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

no sugars added claim
type: Class
subclass of: no or reduced sugar claim
definition: A claim stating that sugars have not been added to a food, and any claim likely to have the same meaning for the consumer, may only be made where the product does not contain any added mono- or disaccharides or any other food used for its sweetening properties. If sugars are naturally present in the food, the following indication should also appear on the label: "CONTAINS NATURALLY OCCURRING SUGARS" [REGULATION (EC) No 1924/2006 Corrigendum]. No added sugars and 'without added sugars' are allowed if no sugar or sugar containing ingredient is added during processing. (28 Federal Register 2302, January 6, 1993)
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

starch-related claim
type: Class
subclass of: nutrition-related claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

no modified food starch added claim
type: Class
subclass of: starch-related claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

no starch added claim
type: Class
subclass of: starch-related claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

vitamin- or mineral-related claim
type: Class
subclass of: nutrition-related claim
definition: A claim about a vitamin or mineral with respect to an edible product.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

color-related claim
type: Class
subclass of: dietary claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

no artificial colors claim
type: Class
subclass of: color-related claim
subclass of: artificial ingredient-related claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

no color added claim
type: Class
subclass of: color-related claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

flavor- or taste-related claim
type: Class
subclass of: dietary claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

no artificial flavors claim
type: Class
subclass of: flavor- or taste-related claim
subclass of: artificial ingredient-related claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

no flavor added claim
type: Class
subclass of: flavor- or taste-related claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

sweetener-related claim
type: Class
subclass of: dietary claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

no artificial sweeteners claim
type: Class
subclass of: sweetener-related claim
subclass of: artificial ingredient-related claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

unsweetened claim
type: Class
subclass of: sweetener-related claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

artificial ingredient-related claim
type: Class
subclass of: dietary claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

no artificial ingredients claim
type: Class
subclass of: artificial ingredient-related claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

no artificial additives claim
type: Class
subclass of: artificial ingredient-related claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

preservative-related claim
type: Class
subclass of: dietary claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

no nitrite/nitrate added claim
type: Class
subclass of: artificial ingredient-related claim
subclass of: preservative-related claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

no sulfite added claim
type: Class
subclass of: artificial ingredient-related claim
subclass of: preservative-related claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

no artificial preservatives claim
type: Class
subclass of: artificial ingredient-related claim
subclass of: no preservatives claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

no preservatives claim
type: Class
subclass of: preservative-related claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

other ingredient- or constituent-related claim
type: Class
subclass of: dietary claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

no msg added claim
type: Class
subclass of: other ingredient- or constituent-related claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

caffeine free claim
type: Class
subclass of: other ingredient- or constituent-related claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

naturally caffeine free claim
type: Class
subclass of: caffeine free claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

processing-related claim
type: Class
subclass of: label claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

"fresh" label claim
type: Class
subclass of: general label claim
definition: A raw food that has not been frozen, heat processed or otherwise preserved.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

not pasteurized claim
type: Class
subclass of: processing-related claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

unpurified or unrefined claim
type: Class
subclass of: processing-related claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

unbleached claim
type: Class
subclass of: processing-related claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

health-related claim
type: Class
subclass of: dietary claim
definition: Health claim means any claim made on the label or in labeling of a food, including a dietary supplement, that expressly or by implication, including "third party" references, written statements (e.g., a brand name including a term such as "heart"), symbols (e.g., a heart symbol), or vignettes, characterizes the relationship of any substance to a disease or health-related condition. See also 21 CFR 101.14 [http://www.accessdata.fda.gov/scripts/cdrh/cfdocs/cfcfr/CFRSearch.cfm?fr=101.14]. A claim is a health claim if in the naming of the substance or category of substances, there is a description or indication of a functionality or an implied effect on health; examples: "contains antioxidants" (the function is an antioxidant effect); "containsprobiotics/prebiotics" (the reference to probiotic/prebiotic implies a health benefit). Equally, claims which refer to an indication of a functionality in the description of a nutrient or a substance (for instance as an adjective to the substance) should also beclassified as a health claim; examples: "with prebiotic fibres" or "contains prebiotic fibres". In Europe, a health claim is any statement about a relationship between food and health [http://ec.europa.eu/food/food/labellingnutrition/claims/health_claims_en.htm], and only authorized health claims are legal [see http://ec.europa.eu/food/food/labellingnutrition/claims/community_register/health_claims_en.htm]. COMMISSION REGULATION (EU) No 432/2012 of 16 May 2012 establishes a list of permitted health claims made on foods, other than those referring to the reduction of disease risk and to children"s development and health [http://eur-lex.europa.eu/LexUriServ/LexUriServ.do?uri=OJ:L:2012:136:0001:0040:en:PDF]
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

tooth decay-related claim
type: Class
subclass of: health-related claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

religion- or customs-related claim
type: Class
subclass of: dietary claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

kosher claim
type: Class
subclass of: religion- or customs-related claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

organic food claim
type: Class
subclass of: dietary claim
definition: USA: The 1990 Farm Act specifies that a food labeled 'organic' must meet four requirements: 1) the food must be raised by specified methods to replenish and maintain the fertility of the soil; 2) the food must be certified as having been produced with a nationally approved list of materials and practices; 3) to be eligible for certification at least three years must have elapsed between the first organic harvest and first use of nationally approved materials on land and crops;and 4) organic foods must meet all local, state and federal regulations governing the quality and safety of the food supply. Europe: Foods produced in accordance with Council Regulation (EC) No 834/2007 of 28 June 2007 on organic production and labelling of organic products and repealing Regulation (EEC) No 2092/91. [http://eur-lex.europa.eu/LexUriServ/LexUriServ.do?uri=OJ:L:2007:189:0001:0023:EN:PDF]
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

"free" label claim
type: Class
subclass of: general label claim
definition: Considerations include amounts that are 'nutritionally trivial' and amounts that can be declared as zero on the nutrition label. An additional criterion based on amount per weight (e.g., per 100 grams) is not considered necessary because the amount of nutrient in a 'free' food is so low that even frequent and repeated consumption is unlikely to have physiological consequences. (U.S. proposed)
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

"high" label claim
type: Class
subclass of: general label claim
definition: An amount customarily consumed contains 20% or more of the daily nutritional value to describe protein, vitamins, minerals, dietary fiber, or potassium. May be used on meals or main dishes to indicate that product contains a food that meets the definition.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

"less" label claim
type: Class
subclass of: general label claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

"light" label claim
type: Class
subclass of: general label claim
definition: A claim stating that a product is "light" or "lite", and any claim likely to have the same meaning for the consumer, shall follow the same conditions as those set for the term "reduced", see *REDUCED {NAME OF NUTRIENT} NUTRITION CLAIM [P0132]*; the claim shall also be accompanied by an indication of the characteristic(s) which make(s) the food "light" or "lite" [REGULATION (EC) No 1924/2006 Corrigendum 2007-01-18]. Used for foods that have 33.3% fewer calories than a comparable product and a minimum reduction of more than 40 calories per serving. Any other use of 'light' must specify whether it refers to the look, taste or smell; for example, 'light in color'. (U.S. FDA proposed)
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

"more" label claim
type: Class
subclass of: general label claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

"source of" label claim
type: Class
subclass of: general label claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

kosher for passover claim
type: Class
subclass of: kosher claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food consumer group
type: Class
subclass of: material entity
definition: A food consumer group is a class of organism based on their heterotrophic requirements or preferences.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

no or reduced cholesterol claim
type: Class
subclass of: cholesterol special claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

(percent) fat free claim
type: Class
subclass of: low fat food
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

sodium free claim
type: Class
subclass of: salt or sodium free claim
definition: Food having less than 5 miligrams sodium per amount customarily consumed (or for meals and main dishes, less than 5 milligrams sodium per labeled serving). Such food must contain no ingredient that is sodium chloride or generally understood to contain sodium except where the ingredient listed is footnoted '*adds a trivial amount of sodium'.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

very low sodium claim
type: Class
subclass of: very low salt or sodium claim
definition: Food having 35 milligrams or less sodium per amount customarily consumed (and per 50 grams of food if the amount customarily consumed is small). Meals and main dishes contain 35 milligrams or less sodium per 100 grams food.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

reduced sodium claim
type: Class
subclass of: reduced salt or sodium claim
definition: Food containing at least 25% less sodium per amount customarily consumed than the sodium content of a comparable food product. The comparable food may not be 'low sodium'.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

low sodium claim
type: Class
subclass of: low salt or sodium claim
definition: Foods having 140 milligrams or less sodium per amount customarily consumed (and per 50 grams of food if the amount customarily consumed is small). Meals and main dishes have 140 milligrams sodium per 100 grams of food.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

game as consumer
type: Class
subclass of: food animal as consumer
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

rabbit as consumer
type: Class
subclass of: food animal as consumer
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

other special claim
type: Class
subclass of: label claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

label claim in food name
type: Class
subclass of: general label claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

label claim separate from food name
type: Class
subclass of: general label claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

no water added claim
type: Class
subclass of: processing-related claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

pareve claim
type: Class
subclass of: religion- or customs-related claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

noncarbonated claim
type: Class
subclass of: flavor- or taste-related claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

lactose reduced food
type: Class
subclass of: no or reduced sugar claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

lactose free food
type: Class
subclass of: lactose reduced food
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

unenriched claim
type: Class
subclass of: vitamin- or mineral-related claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

no vitamin or mineral added claim
type: Class
subclass of: vitamin- or mineral-related claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

gluten free claim
type: Class
subclass of: other ingredient- or constituent-related claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

egg free claim
type: Class
subclass of: other ingredient- or constituent-related claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

alcohol free claim
type: Class
subclass of: other ingredient- or constituent-related claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

kosher milchlig claim
type: Class
subclass of: kosher claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

"fresh frozen" label claim
type: Class
subclass of: general label claim
definition: The food was quickly frozen while still fresh.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

saturated fat free food
type: Class
subclass of: saturated fat-related claim
definition: A claim that a food does not contain saturated fat, and any claim likely to have the same meaning for the consumer, may only be made where the sum of saturated fat and trans-fatty acids does not exceed 0,1 g of saturated fat per 100 g or 100 ml [REGULATION (EC) No 1924/2006 Corrigendum 2007-01-18]. Food having less than 0.5 grams saturated fat per amount customarily consumed (or for meals and main dishes, less than 0.5 grams saturated fat per labeled serving). Trans fatty acids are not more than 1% of total fat. Such foods contain no ingredient that is understood to contain saturated fat except where the ingredient listed has been footnoted '*adds a trivial amount of saturated fat' [US FDA].
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

reduced saturated fat food
type: Class
subclass of: saturated fat-related claim
definition: Food containing at least 25% less saturated fat per amount customarily consumed than the saturated fat content of a comparable food product. The comparable food product may not be 'low saturated fat'.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

reduced sugars food
type: Class
subclass of: no or reduced sugar claim
definition: Food having at least 25% less sugars per amount customarily consumed than the sugars content of a comparable food product.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

aliment de disette
type: Class
subclass of: other special claim
definition: Wild or semiwild foods consumed only during periods of famine when no other food is available.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

enriched food claim
type: Class
subclass of: vitamin- or mineral-related claim
definition: A food is 'enriched' when nutrients are added to it to replace those that are lost in processing.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

fortified food claim
type: Class
subclass of: vitamin- or mineral-related claim
definition: A food is 'fortified' when nutrients that were never present are added to it.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

iodized claim
type: Class
subclass of: mineral added claim
definition: A claim that iodine has been added to an edible product.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

unfortified claim
type: Class
subclass of: vitamin- or mineral-related claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

halal claim
type: Class
subclass of: religion- or customs-related claim
definition: Characterized by adherence to the dietary practices required by Islamic law (Webster's).
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

adult human as food consumer
type: Class
subclass of: human as food consumer
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

infant as food consumer, 0 - 3 months
type: Class
subclass of: infant as food consumer, 0 - 6 months
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

infant as food consumer, 3 - 6 months
type: Class
subclass of: infant as food consumer, 0 - 6 months
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

infant as food consumer, 6 - 12 months
type: Class
subclass of: infant as food consumer
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

toddler as food consumer, 12 months and onwards
type: Class
subclass of: infant or toddler as food consumer
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

low alcohol claim
type: Class
subclass of: other ingredient- or constituent-related claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

probiotic claim
type: Class
subclass of: other ingredient- or constituent-related claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

full fat claim
type: Class
subclass of: fat special claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

trans fat claim
type: Class
subclass of: fat special claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food quality claim
type: Class
subclass of: other special claim
definition: Food Quality/Food Assurance Claim indicates, with reference to the product branding, labelling or packaging, whether the product is stamped with a quality mark, as approved by the governing authority, such as USDA for USA products [Source: GS1].
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

diabetic or suitable for diabetics claim
type: Class
subclass of: health-related claim
definition: It should be noted that such claims are illegal in some countries, e.g. Denmark, and that other countries, e.g. United Kingdom, are calling for an end to the use of terms such as 'diabetic' or 'suitable for diabetics' on food labels. The European Commission is considering how foods intended specifically for people with diabetes can be controlled.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

vegan/vegetarian or suitability for vegan/vegetarian claim
type: Class
subclass of: religion- or customs-related claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

no pork added claim
type: Class
subclass of: other ingredient- or constituent-related claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

no beef added claim
type: Class
subclass of: other ingredient- or constituent-related claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

protein special claim
type: Class
subclass of: nutrition-related claim
definition: Food that is promoted as being either high or low in protein.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

high protein food
type: Class
subclass of: protein special claim
definition: A claim that a food is high in protein, and any claim likely to have the same meaning for the consumer, may only be made where at least 20 % of the energy value of the food is provided by protein [REGULATION (EC) No 1924/2006 Corrigendum 2007-01-18].
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

natural source of vitamins and or minerals claim
type: Class
subclass of: source of {name of vitamin/s} and/or {name of mineral/s} nutrition claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

source of fibre
type: Class
subclass of: fiber special claim
definition: A claim that a food is a source of fibre, and any claim likely to have the same meaning for the consumer, may only be made where the product contains at least 3 g of fibre per 100 g or at least 1,5 g of fibre per 100 kcal [REGULATION (EC) No 1924/2006 Corrigendum 2007-01-18].
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

source of protein
type: Class
subclass of: protein special claim
definition: A claim that a food is a source of protein, and any claim likely to have the same meaning for the consumer, may only be made where at least 12 % of the energy value of the food is provided by protein. [REGULATION (EC) No 1924/2006 Corrigendum].
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

contains {name of the nutrient or other substance} nutrition claim
type: Class
subclass of: vitamin- or mineral-related claim
definition: A claim that a food contains a nutrient or another substance, for which specific conditions are not laid down in this Regulation, or any claim likely to have the same meaning for the consumer, may only be made where the product complies with all the applicable provisions of this Regulation, and in particular Article 5. For vitamins and minerals the conditions of the claim "source of" shall apply. [REGULATION (EC) No 1924/2006 Corrigendum 2007-01-18].
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

increased {name of nutrient} nutrition claim
type: Class
subclass of: vitamin- or mineral-related claim
definition: A claim stating that the content in one or more nutrients, other than vitamins and minerals, has been increased, and any claim likely to have the same meaning for the consumer, may only be made where the product meets the conditions for the claim "source of" and the increase in content is at least 30 % compared to a similar product. [Forordning (EF) nr. 1924/2006 Berigtigelse 2007-01-18].
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

"naturally/natural" label claim
type: Class
subclass of: general label claim
definition: Where a food naturally meets the condition(s) laid down in this Annex for the use of a nutritional claim, the term "naturally/natural" may be used as a prefix to the claim [REGULATION (EC) No 1924/2006 Corrigendum2007-01-18].
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

source of {name of vitamin/s} and/or {name of mineral/s} nutrition claim
type: Class
subclass of: vitamin- or mineral-related claim
definition: A claim that a food is a source of vitamins and/or minerals, and any claim likely to have the same meaning for the consumer, may only be made where the product contains at least a significant amount as defined in the Annex to Directive 90/496/EEC or an amount provided for by derogations granted according to Article 6 of Regulation (EC) No 1925/2006 of the European Parliament and of the Council of 20 December 2006 on the addition of vitamins and minerals and of certain other substances to foods [REGULATION (EC) No 1924/2006 Corrigendum2007-01-18].
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

high {name of vitamin/s} and/or {name of mineral/s} nutrition claim
type: Class
subclass of: vitamin- or mineral-related claim
definition: A claim that a food is high in vitamins and/or minerals, and any claim likely to have the same meaning for the consumer, may only be made where the product contains at least twice the value of "source of [NAME OF VITAMIN/S] and/or [NAME OF MINERAL/S]" [REGULATION (EC) No 1924/2006 Corrigendum 2007-01-18].
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

reduced {name of nutrient} nutrition claim
type: Class
subclass of: vitamin- or mineral-related claim
definition: A claim stating that the content in one or more nutrients has been reduced, and any claim likely to have the same meaning for the consumer, may only be made where the reduction in content is at least 30 % compared to a similar product, except for micronutrients, where a 10 % difference in the reference values as set in Directive 90/496/EEC shall be acceptable, and for sodium, or the equivalent value for salt, where a 25 % difference shall be acceptable. [REGULATION (EC) No 1924/2006 Corrigendum 2007-01-18].
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food allergen labelling
type: Class
subclass of: label claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food allergen labelling about cereals containing gluten and products thereof
type: Class
subclass of: food allergen labelling
definition: Regulated by Directive 2003/89/EC of the European Parliament and of the Council of 10 November 2003 amending Directive 2000/13/EC as regards indication of the ingredients present in foodstuffs.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food allergen labelling about crustaceans and products thereof
type: Class
subclass of: food allergen labelling
definition: Regulated by Directive 2003/89/EC of the European Parliament and of the Council of 10 November 2003 amending Directive 2000/13/EC as regards indication of the ingredients present in foodstuffs.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food allergen labelling about eggs and products thereof
type: Class
subclass of: food allergen labelling
definition: Regulated by Directive 2003/89/EC of the European Parliament and of the Council of 10 November 2003 amending Directive 2000/13/EC as regards indication of the ingredients present in foodstuffs.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food allergen labelling about fish and products thereof
type: Class
subclass of: food allergen labelling
definition: Regulated by Directive 2003/89/EC of the European Parliament and of the Council of 10 November 2003 amending Directive 2000/13/EC as regards indication of the ingredients present in foodstuffs.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food allergen labelling about peanuts and products thereof
type: Class
subclass of: food allergen labelling
definition: Regulated by Directive 2003/89/EC of the European Parliament and of the Council of 10 November 2003 amending Directive 2000/13/EC as regards indication of the ingredients present in foodstuffs.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food allergen labelling about soybeans and products thereof
type: Class
subclass of: food allergen labelling
definition: Regulated by Directive 2003/89/EC of the European Parliament and of the Council of 10 November 2003 amending Directive 2000/13/EC as regards indication of the ingredients present in foodstuffs.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food allergen labelling about milk and products thereof, including lactose
type: Class
subclass of: food allergen labelling
definition: Regulated by Directive 2003/89/EC of the European Parliament and of the Council of 10 November 2003 amending Directive 2000/13/EC as regards indication of the ingredients present in foodstuffs.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food allergen labelling about nuts and products thereof
type: Class
subclass of: food allergen labelling
definition: Regulated by Directive 2003/89/EC of the European Parliament and of the Council of 10 November 2003 amending Directive 2000/13/EC as regards indication of the ingredients present in foodstuffs.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food allergen labelling about celery and products thereof
type: Class
subclass of: food allergen labelling
definition: Regulated by Directive 2003/89/EC of the European Parliament and of the Council of 10 November 2003 amending Directive 2000/13/EC as regards indication of the ingredients present in foodstuffs.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food allergen labelling about mustard and products thereof
type: Class
subclass of: food allergen labelling
definition: Regulated by Directive 2003/89/EC of the European Parliament and of the Council of 10 November 2003 amending Directive 2000/13/EC as regards indication of the ingredients present in foodstuffs.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food allergen labelling about sesame seeds and products thereof
type: Class
subclass of: food allergen labelling
definition: Regulated by Directive 2003/89/EC of the European Parliament and of the Council of 10 November 2003 amending Directive 2000/13/EC as regards indication of the ingredients present in foodstuffs.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food allergen labelling about sulphur dioxide and sulphites
type: Class
subclass of: food allergen labelling
definition: Sulphur dioxide and sulphites are included in the EU list of allergens because they can cause adverse reactions in some people. Regulated by Directive 2003/89/EC of the European Parliament and of the Council of 10 November 2003 amending Directive 2000/13/EC as regards indication of the ingredients present in foodstuffs.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food allergen labelling about cocoa and products thereof
type: Class
subclass of: food allergen labelling
definition: Contained in GS1 Allergen Code List.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food allergen labelling about coriander and products thereof
type: Class
subclass of: food allergen labelling
definition: Contained in GS1 Code List.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food allergen labelling about lupine and products thereof
type: Class
subclass of: food allergen labelling
definition: Contained in GS1 Code List.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food allergen labelling about corn and products thereof
type: Class
subclass of: food allergen labelling
definition: Contained in GS1 Code List.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food allergen labelling about pod fruits and products thereof
type: Class
subclass of: food allergen labelling
definition: Contained in GS1 Code List.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food allergen labelling about carrot and products thereof
type: Class
subclass of: food allergen labelling
definition: Contained in GS1 Code List.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food allergen labelling about molluscs and products thereof
type: Class
subclass of: food allergen labelling
definition: Contained in GS1 Code List.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

"no trans fat" claim
type: Class
subclass of: trans fat claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

traditional food claim
type: Class
subclass of: religion- or customs-related claim
definition: 'Traditional" means proven usage on the Community market for a time period showing transmission between generations; this time period should be the one generally ascribed to one human generation, at least 25 years [COUNCIL REGULATION (EC) No 509/2006 of 20 March 2006 on agricultural products and foodstuffs as traditional specialities guaranteed]. A traditional food product is a product frequently consumed or associated to specific celebrations and/or seasons, normally transmitted from one generation to another, made with care in a specific way according to the gastronomic heritage, with little or no processing/manipulation, that is distinguished and known because of its sensory properties and associated to a certain local area, region or country. [http://www.truefood.eu/] Traditional means conforming to established practice or specifications prior to the Second World War. Traditional food is a food of a specific feature or features, which distinguish it clearly from other similar products of the same category in terms of the use of traditional ingredients (raw materials or primary products), traditional composition or traditional type of production and/or processing method. [Traditional Foods in Europe, EuroFIR Synthesis report No 6, 2009]
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

ethnic food claim
type: Class
subclass of: religion- or customs-related claim
definition: Ethnic food is food from countries other than the home market contributing to a different food culture than the traditional cuisine of the host country. [Ethnic Groups and Foods in Europe, EuroFIR Synthesis report No 3, 2005] "Ethnic food" has been used colloquially for a wide variety of foodstuffs, virtually any that can be identified in the public mind with a foreign source or an ethnic minority group. In the narrower ethnographic meaning, it pertains only to food prepared or consumed by members of an ethnic group as a manifestation of its ethnicity. In the end ethnic food is food that members of an ethnic group consider their own and that others attribute to them. [http://www.answers.com/topic/ethnic-cuisines]
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

traditional ingredient claim
type: Class
subclass of: traditional food claim
definition: Raw material (species and/or varieties) or primary product either alone or as an ingredient that has been used in identifiable geographical areas and remains in use today (taking into account cases where use was abandoned for a time and then reinstated) and its characteristics are in accordance with current specifications of national and EU legislation. [Traditional Foods in Europe, EuroFIR Synthesis report No 6, 2009]
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

traditional composition claim
type: Class
subclass of: traditional food claim
definition: The uniquely identifiable composition (in terms of ingredients) that was first established prior to the Second World War and passed down through generations by oral or other means (taking into account cases where composition was abandoned for a time and then reinstated) and when necessary is differentiated from the composition defined by the generally recognized characteristics of the wider food group to which the product belongs. [Traditional Foods in Europe, EuroFIR Synthesis report No 6, 2009]
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

traditional type of production and/or processing claim
type: Class
subclass of: traditional food claim
definition: The production and/or processing of a food that has been transmitted from generation to generation through oral tradition or other means and has been applied prior to the Second World War and remains in use (taking into account cases where composition was abandoned for a time and then reinstated) despite its adjustment to binding rules from national or EU food hygiene regulations or the incorporation of technological progress, under the condition that production and/or processing remains in line with methods used originally and that the food"s intrinsic features such as its physical, chemical, microbiological or organoleptic features are maintained. [Traditional Foods in Europe, EuroFIR Synthesis report No 6, 2009]
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

authentic ethnic food claim
type: Class
subclass of: ethnic food claim
definition: Authentic ethnic food is food from countries other than the home market contributing to a different food culture than the traditional cuisine of the host country. Food may be adapted by combining local and imported ingredients. [Ethnic Groups and Foods in Europe, EuroFIR Synthesis report No 3, 2005]
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

modified ethnic food claim
type: Class
subclass of: ethnic food claim
definition: Modified ethnic food: a commercially-available version of a food that has been modified to suit the taste and preference of the host country. [Ethnic Groups and Foods in Europe, EuroFIR Synthesis report No 3, 2005]
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

monounsaturated fat claim
type: Class
subclass of: unsaturated fat claim
definition: COMMISSION REGULATION (EU) No 116/2010 of 9 February 2010 amending Regulation (EC) No 1924/2006 of the European Parliament and of the Council with regard to the list of nutrition claims.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

polyunsaturated fat claim
type: Class
subclass of: unsaturated fat claim
definition: COMMISSION REGULATION (EU) No 116/2010 of 9 February 2010 amending Regulation (EC) No 1924/2006 of the European Parliament and of the Council with regard to the list of nutrition claims
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

high monounsaturated fat
type: Class
subclass of: monounsaturated fat claim
definition: A claim that a food is high in monounsaturated fat, and any claim likely to have the same meaning for the consumer, may only be made where at least 45 % of the fatty acids present in the product derive from monounsaturated fat under the condition that monounsaturated fat provides more than 20 % of energy of the product [COMMISSION REGULATION (EU) No 116/2010 of 9 February 2010 amending Regulation (EC) No 1924/2006 of the European Parliament and of the Council with regard to the list of nutrition claims].
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

omega-3 fatty acids claim
type: Class
subclass of: polyunsaturated fat claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

high omega-3 fatty acids
type: Class
subclass of: omega-3 fatty acids claim
definition: A claim that a food is high in omega-3 fatty acids, and any claim likely to have the same meaning for the consumer, may only be made where the product contains at least 0,6 g alpha-linolenic acid per 100 g and per 100 kcal, or at least 80 mg of the sum of eicosapentaenoic acid and docosahexaenoic acid per 100 g and per 100 kcal [COMMISSION REGULATION (EU) No 116/2010 of 9 February 2010 amending Regulation (EC) No 1924/2006 of the European Parliament and of the Council with regard to the list of nutrition claims].
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

high polyunsaturated fat
type: Class
subclass of: polyunsaturated fat claim
definition: A claim that a food is high in polyunsaturated fat, and any claim likely to have the same meaning for the consumer, may only be made where at least 45 % of the fatty acids present in the product derive from polyunsaturated fat under the condition that polyunsaturated fat provides more than 20 % of energy of the product [COMMISSION REGULATION (EU) No 116/2010 of 9 February 2010 amending Regulation (EC) No 1924/2006 of the European Parliament and of the Council with regard to the list of nutrition claims].
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

unsaturated fat claim
type: Class
subclass of: fat special claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

high unsaturated fat
type: Class
subclass of: unsaturated fat claim
definition: A claim that a food is high in unsaturated fat, and any claim likely to have the same meaning for the consumer may only be made where at least 70 % of the fatty acids present in the product derive from unsaturated fat under the condition that unsaturated fat provides more than 20 % of energy of the product [COMMISSION REGULATION (EU) No 116/2010 of 9 February 2010 amending Regulation (EC) No 1924/2006 of the European Parliament and of the Council with regard to the list of nutrition claims]..
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

source of omega-3 fatty acids
type: Class
subclass of: omega-3 fatty acids claim
definition: A claim that a food is a source of omega-3 fatty acids, and any claim likely to have the same meaning for the consumer, may only be made where the product contains at least 0,3 g alpha-linolenic acid per 100 g and per 100 kcal, or at least 40 mg of the sum of eicosapentaenoic acid and docosahexaenoic acid per 100 g and per 100 kcal [COMMISSION REGULATION (EU) No 116/2010 of 9 February 2010 amending Regulation (EC) No 1924/2006 of the European Parliament and of the Council with regard to the list of nutrition claims].
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

human as food consumer, four years and above
type: Class
subclass of: human as food consumer
definition: US FDA Approved user group.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

man as food consumer
type: Class
subclass of: adult human as food consumer
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

woman as food consumer
type: Class
subclass of: adult human as food consumer
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

pregnant or lactating woman as food consumer
type: Class
subclass of: woman as food consumer
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

senior as food consumer
type: Class
subclass of: adult human as food consumer
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

teenager as food consumer
type: Class
subclass of: human as food consumer, four years and above
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

child as food consumer, less than four years
type: Class
subclass of: human as food consumer
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

calcium and osteoporosis related claim
type: Class
subclass of: health-related claim
definition: US FDA approved language lacking for the moment.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

athlete as food consumer
type: Class
subclass of: adult human as food consumer
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

bodybuilder as food consumer
type: Class
subclass of: adult human as food consumer
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

menopaused woman as food consumer
type: Class
subclass of: woman as food consumer
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

weight-reducer as food consumer
type: Class
subclass of: adult human as food consumer
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

infant as food consumer, 0 - 6 months
type: Class
subclass of: infant as food consumer
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

qualified health claim
type: Class
subclass of: health-related claim
definition: In the United States, these claims, usually referred to as "qualified health claims", are regulated by the Food and Drug Administration in the public interest, see 21 Code of Federal Regulations § 101.14 [http://www.accessdata.fda.gov/scripts/cdrh/cfdocs/cfcfr/CFRSearch.cfm?fr=101.14]
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

structure/function claim
type: Class
subclass of: health-related claim
definition: Structure/function claims describe the role of a nutrient or dietary ingredient intended to affect normal structure or function in humans, for example, "calcium builds strong bones". In addition, they may characterize the means by which a nutrient or dietary ingredient acts to maintain such structure or function, for example, "fiber maintains bowel regularity," or "antioxidants maintain cell integrity," or they may describe general well-being from consumption of a nutrient or dietary ingredient. [http://www.fda.gov/Food/LabelingNutrition/LabelClaims/StructureFunctionClaims/default.htm]
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

infant as food consumer
type: Class
subclass of: infant or toddler as food consumer
definition: The term infant is typically applied to young children between the ages of 1 month and 12 months. [http://en.wikipedia.org/wiki/Infant]
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

Native American food claim
type: Class
subclass of: religion- or customs-related claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

Alaskan Native food claim
type: Class
subclass of: Native American food claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

Apache food claim
type: Class
subclass of: Native American food claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

Navajo food claim
type: Class
subclass of: Native American food claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

Shoshone Bannock food claim
type: Class
subclass of: Native American food claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

Pacific food claim
type: Class
subclass of: Native American food claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

Northern Plains food claim
type: Class
subclass of: Native American food claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

Southwest Plains food claim
type: Class
subclass of: Native American food claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

Hopi food claim
type: Class
subclass of: Native American food claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

phytosterol claim
type: Class
subclass of: probiotic claim
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food datum
type: Class
subclass of: IAO_0000027
definition: A data item consisting of a claim or record of a food product's origin or processing history or suitability for some purpose.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

cut of meat, u.s.
type: Class
subclass of: butchery cut of animal
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

brisket
type: Class
subclass of: cut of meat, u.s.
definition: A cut of meat from the breast or lower chest of beef or veal.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

chuck
type: Class
subclass of: cut of meat, u.s.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

flank
type: Class
subclass of: cut of meat, u.s.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

rib (meat cut)
type: Class
subclass of: cut of meat, u.s.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

round or leg (meat cut)
type: Class
subclass of: cut of meat, u.s.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

fore shank
type: Class
subclass of: shank (meat)
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

short loin
type: Class
subclass of: cut of meat, u.s.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

sirloin
type: Class
subclass of: cut of meat, u.s.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

short plate
type: Class
subclass of: cut of meat, u.s.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

loin
type: Class
subclass of: cut of meat, u.s.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

fat back
type: Class
subclass of: shoulder (meat cut)
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

jowl, trimmed
type: Class
subclass of: cut of meat, u.s.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

foot (meat cut)
type: Class
subclass of: cut of meat, u.s.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

shoulder (meat cut)
type: Class
subclass of: cut of meat, u.s.
definition: Meat cut from the area where the clod meets the edge of the pectoral muscle in an animal.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

breast (meat cut)
type: Class
subclass of: cut of meat, u.s.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

side (meat cut)
type: Class
subclass of: cut of meat, u.s.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

cut of meat, composite
type: Class
subclass of: butchery cut of animal
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

fruit ripeness
type: Class
subclass of: food plant physical quality
definition: A food plant physical characteristic about the ripening stage of development of a fruit.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

unripe
type: Class
subclass of: fruit ripeness
definition: A fruit ripeness characteristic in which a fruit has not achieved full maturity and is not slightly ripe.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

ripe
type: Class
subclass of: fruit ripeness
definition: A fruit ripeness characteristic in which a fruit has achieved full maturity and is ready for utilization.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

belly meat
type: Class
subclass of: cut of meat, u.s.
definition: Boneless skeletal meat from the lower sides of meat animals; usually belly meat is smoked and cured to produce bacon.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food facility preparation process
type: Class
subclass of: food production
definition: The process of producing and/or retailing post-harvest food in a consumer or industrial context.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

home food preparation process
type: Class
subclass of: food facility preparation process
definition: The process of preparing food at a human residence.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

restaurant food preparation process
type: Class
subclass of: restaurant or fast food preparation process
definition: The process of preparing and serving food in a restaurant.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

fast food outlet preparation process
type: Class
subclass of: restaurant or fast food preparation process
definition: The process of preparing and serving food in a fast food outlet.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food industry preparation process
type: Class
subclass of: food facility preparation process
definition: The process of preparing food in an industrial facility.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

commissary food preparation process
type: Class
subclass of: food facility preparation process
definition: The process of preparing food in a commissary.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

restaurant or fast food preparation process
type: Class
subclass of: food facility preparation process
definition: The process of preparing and serving food in a restaurant or fast food outlet.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

street vendor food retail process
type: Class
subclass of: food facility preparation process
definition: The process of sourcing and selling food at a street vending establishment.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

cut of meat, french
type: Class
subclass of: butchery cut of animal
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

quartier avant
type: Class
subclass of: cut of meat, french
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

caparacon
type: Class
subclass of: quartier avant
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

bavette
type: Class
subclass of: caparacon
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

flanchet
type: Class
subclass of: caparacon
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

hampe
type: Class
subclass of: caparacon
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

plat-de-cote
type: Class
subclass of: caparacon
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

poitrine
type: Class
subclass of: caparacon
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

collier
type: Class
subclass of: quartier avant
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

basses-cotes
type: Class
subclass of: quartier avant
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

raquette
type: Class
subclass of: quartier avant
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

gite avant
type: Class
subclass of: raquette
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

jumeau
type: Class
subclass of: raquette
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

marcreuse
type: Class
subclass of: raquette
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

quartier arriere
type: Class
subclass of: cut of meat, french
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

cuisse
type: Class
subclass of: quartier arriere
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

gite arriere
type: Class
subclass of: cuisse
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

semelle
type: Class
subclass of: cuisse
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

tranche (meat cut)
type: Class
subclass of: cuisse
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

tranche grasse
type: Class
subclass of: cuisse
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

aloyau
type: Class
subclass of: quartier arriere
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

entre-cote
type: Class
subclass of: aloyau
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

faux-filet
type: Class
subclass of: aloyau
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

filet
type: Class
subclass of: aloyau
definition: A boneless cut or slice of meat or fish.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

rumsteck
type: Class
subclass of: aloyau
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

butchery cut of animal
type: Class
subclass of: piece of animal
definition: A piece of animal meat which has been cut according to butchery practice.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

agricultural food production
type: Class
subclass of: food production
definition: A food production process involving the rearing of an organism.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

wild food harvesting
type: Class
subclass of: agricultural food production
definition: The hunting or foraging for wild food resources.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp
has synonym: gathered
has synonym: wild

domestic or cultivated food production
type: Class
subclass of: agricultural food production
definition: An agricultural production process involving a domesticated organism.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

tail
type: Class
subclass of: cut of meat, u.s.
subclass of: quartier arriere
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

cut of poultry meat
type: Class
subclass of: butchery cut of animal
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

poultry wing
type: Class
subclass of: animal wing
subclass of: piece of poultry meat
subclass of: cut of poultry meat
definition: A whole wing that is obtained from a poultry.
definition: The wing of a poultry bird.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

poultry breast
type: Class
subclass of: animal breast
subclass of: piece of poultry meat
subclass of: cut of poultry meat
definition: A whole breast that is obtained from a poultry.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

poultry leg
type: Class
subclass of: animal leg
subclass of: piece of poultry meat
subclass of: cut of poultry meat
definition: A whole leg that is obtained from a poultry.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

poultry thigh
type: Class
subclass of: animal thigh
subclass of: piece of poultry meat
subclass of: cut of poultry meat
definition: A whole thigh that is obtained from a poultry.
definition: The thigh cut of a poultry bird.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

semidomestic or semiwild food production
type: Class
subclass of: agricultural food production
definition: An agricultural production process involving wild plants, insects or other organisms that are tended and protected.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food production
type: Class
subclass of: OBI_0000011
definition: A planned process involving the rearing, manufacture or distribution of food material.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food plant cultivation
type: Class
subclass of: domestic or cultivated food production
definition: The cultivation of plants for food.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

outdoor/open-air plant cultivation
type: Class
subclass of: food plant cultivation
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

conventional outdoor/open-air cultivation
type: Class
subclass of: outdoor/open-air plant cultivation
definition: Open-air plant cultivation using non-organic fertilizer, pest and weed control treatments.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

outdoor/open-air organic plant cultivation
type: Class
subclass of: outdoor/open-air plant cultivation
subclass of: organic plant cultivation
definition: The organic cultivation of plants in an unsheltered area.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

under glass/protected plant cultivation
type: Class
subclass of: food plant cultivation
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

conventional under glass/protected cultivation
type: Class
subclass of: under glass/protected plant cultivation
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

under glass/protected organic plant cultivation
type: Class
subclass of: under glass/protected plant cultivation
subclass of: organic plant cultivation
definition: The organic cultivation of plants in a sheltered area.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

hydroponic cultivation
type: Class
subclass of: under glass/protected plant cultivation
definition: A method of growing plants, usually crops, without soil, by using mineral nutrient solutions in an aqueous solvent.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

tenderloin
type: Class
subclass of: cut of meat, u.s.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

organic plant cultivation
type: Class
subclass of: food plant cultivation
subclass of: organic food production
definition: Plant cultivation according to organic food production methods including the use of fertilizers of organic origin such as compost manure, green manure, and bone meal and places emphasis on techniques such as crop rotation and companion planting, biological pest control and the fostering of insect predators.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

food plant physical quality
type: Class
subclass of: food material characteristic
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

organic food production
type: Class
subclass of: agricultural food production
definition: An agricultural production process that aims to produce food using natural substances and processes that have a limited negative environmental and human health impact as they encourage the responsible use of energy and natural resources like water, the maintenance of biodiversity, the preservation of regional ecological balances, enhancement of soil fertility, and animal welfare.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

free-range food animal rearing
type: Class
subclass of: food animal rearing
definition: A method of farming husbandry where the animals, for at least part of the day, can roam freely outdoors, rather than being confined in an enclosure for 24 hours each day. This term can be applied to egg, dairy, poultry, and meat production.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

shank (meat)
type: Class
subclass of: cut of meat, u.s.
definition: A meat shank or shin is the portion of meat around the tibia of the animal, the leg bone beneath the knee. [http://en.wikipedia.org/wiki/Shank_(meat)]
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

poultry neck
type: Class
subclass of: animal neck
subclass of: piece of poultry meat
subclass of: cut of poultry meat
definition: A whole neck that is obtained from a poultry.
definition: The neck cut of a poultry bird.
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

consumer-ready food packaging
type: Class
subclass of: food packaging
definition: A food packaging type which is intended for the consumer to remove or open to access food material.
imported from: foodon.owl

wholesale food bulk packaging
type: Class
subclass of: food packaging
definition: A food packaging type which is used in bulk food packaging and is removed prior to retail distribution.
imported from: foodon.owl

tuna saku
type: Class
subclass of: tuna food product
subclass of: saku
definition: A saku which is derived from tuna fish.
imported from: foodon.owl

hormone-free food product claim
type: Class
subclass of: label claim
definition: A label claim that no natural or synthetic hormones were added during the production of a food product.
imported from: foodon.owl

antibiotic-free food product claim
type: Class
subclass of: label claim
definition: A label claim that no natural or synthetic antibiotics were added during the production of a food product.
imported from: foodon.owl

cage-free animal claim
type: Class
subclass of: label claim
definition: A label claim that the animals which the food product derives from, were not raised in caged housing systems.
imported from: foodon.owl

pasture-raised food product claim
type: Class
subclass of: label claim
definition: A label claim that the animals which the food product derives from, were raised for some portion of their lives on or with access to a pasture.
imported from: foodon.owl

grass-fed food product claim
type: Class
subclass of: label claim
definition: A label claim that the animals which the food product derives from, were fed a grass or forage-based diet.
imported from: foodon.owl

farm-raised food product claim
type: Class
subclass of: label claim
definition: A domestic or cultivated food production in which plant or animal from which the food product derives was raised on a farm.
imported from: foodon.owl

label claim
type: Class
subclass of: food datum
imported from: foodon.owl
database_cross_reference: http://www.langual.org/langual_thesaurus.asp

continent
type: Class
subclass of: geographic location
type: NamedIndividual
imported from: gaz.owl

populated place, Haiti
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00003953

geographic location
type: Class
subclass of: GENEPIO_0001886
type: NamedIndividual

Africa
type: Class
subclass of: continent
type: NamedIndividual
imported from: gaz.owl

North America
type: Class
subclass of: continent
type: NamedIndividual
imported from: gaz.owl

South America
type: Class
subclass of: continent
type: NamedIndividual
imported from: gaz.owl

Eurasia
type: Class
subclass of: continent
type: NamedIndividual
imported from: gaz.owl

Antarctica
type: Class
subclass of: continent
type: NamedIndividual
imported from: gaz.owl
database_cross_reference: INSDC:country:antarctica

Oceania
type: Class
subclass of: geographic location
type: NamedIndividual
imported from: gaz.owl

Oceans and Seas
type: Class
subclass of: geographic location
subclass of: NCIT C25464
type: NamedIndividual
user interface label: [Oceans and Seas]
imported from: gaz.owl

Kingdom of Spain
type: Class
subclass of: geographic location
type: NamedIndividual
type: national geopolitical entity
imported from: gaz.owl
database_cross_reference: INSDC:country:spain

Province (Algeria)
type: Class
subclass of: NCIT C25632
type: NamedIndividual
located in: GAZ_00000563

Azores
type: Class
subclass of: Autonomous Region (Portugal)
type: NamedIndividual
located in: GAZ_00001141
imported from: gaz.owl

Capital Territory (Nigeria)
type: Class
subclass of: NCIT C89811
type: NamedIndividual
located in: GAZ_00000912

State (Nigeria)
type: Class
subclass of: NCIT C87194
type: NamedIndividual
located in: GAZ_00000912

Province (Sierra Leone)
type: Class
subclass of: NCIT C25632
type: NamedIndividual
located in: GAZ_00000914

Bermuda
type: Class
subclass of: British Overseas Territory
type: NamedIndividual
located in: GAZ_00146414
imported from: gaz.owl
database_cross_reference: INSDC:country:bermuda

Falkland Islands
type: Class
subclass of: British Overseas Territory
type: NamedIndividual
located in: South America
located in: GAZ_00051082
imported from: gaz.owl
database_cross_reference: INSDC:country:falkland islands (islas malvinas)

Province (Greenland)
type: Class
subclass of: NCIT C25632
type: NamedIndividual
located in: GAZ_00001507

Kingdom of the Netherlands
type: Class
subclass of: geographic location
type: NamedIndividual
imported from: gaz.owl
database_cross_reference: INSDC:country:netherlands

North Sea
type: Class
subclass of: European Seas
type: NamedIndividual
imported from: gaz.owl
database_cross_reference: INSDC:country:north sea

Irish Sea
type: Class
subclass of: European Seas
type: NamedIndividual
imported from: gaz.owl

English Channel
type: Class
subclass of: European Seas
type: NamedIndividual
imported from: gaz.owl

Mediterranean Sea
type: Class
subclass of: European Seas
type: NamedIndividual
imported from: gaz.owl
database_cross_reference: INSDC:country:mediterranean sea

United States of America
type: Class
subclass of: geographic location
subclass of: NCIT C25464
type: NamedIndividual
imported from: gaz.owl
database_cross_reference: INSDC:country:usa

Province (Argentina)
type: Class
subclass of: NCIT C25632
type: NamedIndividual
located in: GAZ_00002928

Province (Canada)
type: Class
subclass of: NCIT C25632
type: NamedIndividual
located in: GAZ_00002560

Province of British Columbia
type: Class
subclass of: Province (Canada)
type: NamedIndividual
imported from: gaz.owl

Province of Ontario
type: Class
subclass of: Province (Canada)
type: NamedIndividual
type: undersea feature
imported from: gaz.owl

Province of Saskatchewan
type: Class
subclass of: Province (Canada)
type: NamedIndividual
imported from: gaz.owl

Province of Nova Scotia
type: Class
subclass of: Province (Canada)
type: NamedIndividual
type: undersea feature
imported from: gaz.owl

Province of Alberta
type: Class
subclass of: Province (Canada)
type: NamedIndividual
imported from: gaz.owl

Province of Newfoundland and Labrador
type: Class
subclass of: Province (Canada)
type: NamedIndividual
type: undersea feature
imported from: gaz.owl

Province of Quebec
type: Class
subclass of: Province (Canada)
type: NamedIndividual
type: undersea feature
imported from: gaz.owl

Province of New Brunswick
type: Class
subclass of: Province (Canada)
type: NamedIndividual
imported from: gaz.owl

Province of Manitoba
type: Class
subclass of: Province (Canada)
type: NamedIndividual
imported from: gaz.owl

Province of Prince Edward Island
type: Class
subclass of: Province (Canada)
type: NamedIndividual
type: undersea feature
located in: GAZ_00047694
imported from: gaz.owl

Territory (Canada)
type: Class
subclass of: NCIT C89811
type: NamedIndividual
located in: GAZ_00002560

Nunavut
type: Class
subclass of: Territory (Canada)
type: NamedIndividual
imported from: gaz.owl

Northwest Territories
type: Class
subclass of: Territory (Canada)
type: NamedIndividual
imported from: gaz.owl

Yukon
type: Class
subclass of: Territory (Canada)
type: NamedIndividual
imported from: gaz.owl

populated place, Argentina
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00002928

Kingdom of Denmark
type: Class
subclass of: geographic location
type: NamedIndividual
imported from: gaz.owl
database_cross_reference: INSDC:country:denmark

populated place, Metropolitan Spain
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00003936

populated place, Italy
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00002650

Kingdom of Norway
type: Class
subclass of: geographic location
type: NamedIndividual
type: national geopolitical entity
imported from: gaz.owl

populated place, Israel
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00002476

populated place, Norway
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00005851

populated place, Bahamas
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00002733

populated place, Japan
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00002747

Territory (Australia)
type: Class
subclass of: NCIT C89811
type: NamedIndividual
located in: GAZ_00000463

State (Australia)
type: Class
subclass of: NCIT C87194
type: NamedIndividual
located in: GAZ_00000463

Northern Territory
type: Class
subclass of: Territory (Australia)
type: NamedIndividual
imported from: gaz.owl

Australian Capital Territory
type: Class
subclass of: Territory (Australia)
type: NamedIndividual
imported from: gaz.owl

Jervis Bay Territory
type: Class
subclass of: Territory (Australia)
type: NamedIndividual
imported from: gaz.owl

Province (Republic of Korea)
type: Class
subclass of: NCIT C25632
type: NamedIndividual
located in: GAZ_00002802

Province (Republic of South Africa)
type: Class
subclass of: NCIT C25632
type: NamedIndividual
located in: GAZ_00001094

Caribbean Sea
type: Class
subclass of: Oceans and Seas
type: NamedIndividual
imported from: gaz.owl

populated place, Chile
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00002825

populated place, Brazil
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00002828

State (India)
type: Class
subclass of: NCIT C87194
type: NamedIndividual
located in: GAZ_00002839

populated place, Canada
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00002560

Autonomous Region (China)
type: Class
subclass of: subnational region
type: NamedIndividual
located in: GAZ_00002845

populated place, Mexico
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00002852

State (United States of Mexico)
type: Class
subclass of: NCIT C87194
type: NamedIndividual
located in: GAZ_00002852

populated place, Panama
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00002892

French Polynesia
type: Class
subclass of: Collectivite d'outre-mer
type: NamedIndividual
located in: GAZ_00005861
located in: GAZ_00051089
imported from: gaz.owl
database_cross_reference: INSDC:country:french polynesia

French Republic
type: Class
subclass of: geographic location
type: NamedIndividual
type: national geopolitical entity
imported from: gaz.owl
database_cross_reference: INSDC:country:france

Portuguese Republic
type: Class
subclass of: geographic location
type: NamedIndividual
type: national geopolitical entity
imported from: gaz.owl
database_cross_reference: INSDC:country:portugal

populated place, Republic of South Africa
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00001094

Region (contiguous United States of America)
type: Class
subclass of: subnational region
type: NamedIndividual
located in: GAZ_00003937
has curation status: IAO_0000122
definition: Census Regions and Divisions are groupings of States that subdivide the United States.
definition editor: Damion Dooley
definition source: United States Census Bureau

Midwest Region
type: Class
subclass of: Region (contiguous United States of America)
type: NamedIndividual
definition: A census region in the United States of America
definition editor: Damion Dooley
imported from: gaz.owl

South Region
type: Class
subclass of: Region (contiguous United States of America)
type: NamedIndividual
definition: A census region in the United States of America
definition editor: Damion Dooley
imported from: gaz.owl

Northeast Region
type: Class
subclass of: Region (contiguous United States of America)
type: NamedIndividual
definition: A census region in the United States of America
definition editor: Damion Dooley
imported from: gaz.owl

West Region
type: Class
subclass of: Region (contiguous United States of America)
type: NamedIndividual
definition: A census region in the United States of America
definition editor: Damion Dooley
imported from: gaz.owl

populated place, Sweden
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00002729

populated place, contiguous United States of America
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00003937

populated place, Uruguay
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00002930

populated place, Hawaii
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00003939

populated place, Chad
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00000586

Province (China)
type: Class
subclass of: NCIT C25632
type: NamedIndividual
located in: GAZ_00002845

Municipality (China)
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00002845

Special Adminstrative Region (China)
type: Class
subclass of: subnational region
type: NamedIndividual
located in: GAZ_00002845

Macau
type: Class
subclass of: Special Adminstrative Region (China)
type: NamedIndividual
imported from: gaz.owl
database_cross_reference: INSDC:country:macau

Hong Kong
type: Class
subclass of: Special Adminstrative Region (China)
type: NamedIndividual
located in: GAZ_00008989
imported from: gaz.owl
database_cross_reference: INSDC:country:hong kong

Province (Costa Rica)
type: Class
subclass of: NCIT C25632
type: NamedIndividual
located in: GAZ_00002901

Puntarenas Province
type: Class
subclass of: Province (Costa Rica)
type: NamedIndividual
type: undersea feature
imported from: gaz.owl

Province (Panama)
type: Class
subclass of: NCIT C25632
type: NamedIndividual
located in: GAZ_00002892

populated place, Slovakia
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00002956

populated place, Denmark
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00005852

populated place, Metropolitan France
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00003940

populated place, Hungary
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00002952

Province (The Netherlands)
type: Class
subclass of: NCIT C25632
type: NamedIndividual
located in: GAZ_00002946

populated place, The Netherlands
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00002946

populated place, Switzerland
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00002941

South West Region
type: Class
subclass of: Region (England) (entry subject to GAZ replacement)
type: NamedIndividual
located in: GAZ_00002641

Greater London Region
type: Class
subclass of: Region (England) (entry subject to GAZ replacement)
type: NamedIndividual
located in: GAZ_00002641

North West Region
type: Class
subclass of: Region (England) (entry subject to GAZ replacement)
type: NamedIndividual
located in: GAZ_00002641

Yorkshire and the Humber
type: Class
subclass of: Region (England) (entry subject to GAZ replacement)
type: NamedIndividual
located in: GAZ_00002641

North East Region
type: Class
subclass of: Region (England) (entry subject to GAZ replacement)
type: NamedIndividual
located in: GAZ_00002641

West Midlands Region
type: Class
subclass of: Region (England) (entry subject to GAZ replacement)
type: NamedIndividual
located in: GAZ_00002641

East Midlands Region
type: Class
subclass of: Region (England) (entry subject to GAZ replacement)
type: NamedIndividual
located in: GAZ_00002641

East Region
type: Class
subclass of: Region (England) (entry subject to GAZ replacement)
type: NamedIndividual
located in: GAZ_00002641

South East Region
type: Class
subclass of: Region (England) (entry subject to GAZ replacement)
type: NamedIndividual
located in: GAZ_00002641

Territory of Guam
type: Class
subclass of: Unincorporated Territory (USA)
type: NamedIndividual
located in: GAZ_00005862
located in: GAZ_00054790
imported from: gaz.owl
comment: lat_lon: 13deg27minN, 144deg47minE.

populated place, Australia
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00000463

Province (Rwanda)
type: Class
subclass of: NCIT C25632
type: NamedIndividual
located in: GAZ_00001087

populated place, Rwanda
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00001087

populated place, Indonesia
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00003727

Province (Indonesia)
type: Class
subclass of: NCIT C25632
type: NamedIndividual
located in: GAZ_00003727

Bali Province
type: Class
subclass of: Province (Indonesia)
type: NamedIndividual
type: undersea feature
located in: GAZ_00003734
imported from: gaz.owl

populated place, Tanzania
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00001103

populated place, Tunisia
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00000562

populated place, Thailand
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00003744

populated place, Bangladesh
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00003750

populated place, Viet Nam
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00003756

populated place, Cuba
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00062289

Province (Cuba)
type: Class
subclass of: NCIT C25632
type: NamedIndividual
located in: GAZ_00062289

populated place, India
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00002839

Egypt
type: Class
subclass of: geographic location
type: NamedIndividual
type: national geopolitical entity
imported from: gaz.owl
database_cross_reference: INSDC:country:egypt
comment: The 2nd level administrative regions of Egypt are very confusuing and different sources conflicting. Those in gaz.obo are from GeoHive (http://www.xist.org/default1.aspx) and are not fully in agreement with those from the WHO (the file EGY_SALB_table.xls downloaded from http://www.who.int/whosis/database/gis/salb/salb_coding.aspx#DATA).

Collectivite d'outre-mer
type: Class
subclass of: geographic location
type: NamedIndividual
located in: French Republic

Saint-Pierre and Miquelon
type: Class
subclass of: Collectivite d'outre-mer
type: NamedIndividual
located in: North America
imported from: gaz.owl
database_cross_reference: INSDC:country:saint pierre and miquelon

Mayotte
type: Class
subclass of: Collectivite d'outre-mer
type: NamedIndividual
located in: GAZ_00006923
imported from: gaz.owl
database_cross_reference: INSDC:country:mayotte

Region d'outre-mer
type: Class
subclass of: geographic location
type: NamedIndividual
located in: French Republic

Turks and Caicos Islands
type: Class
subclass of: British Overseas Territory
type: NamedIndividual
located in: GAZ_00003954
imported from: gaz.owl
database_cross_reference: INSDC:country:turks and caicos islands

Unincorporated Territory (USA)
type: Class
subclass of: NCIT C89811
type: NamedIndividual
located in: United States of America

American Samoa
type: Class
subclass of: Unincorporated Territory (USA)
type: NamedIndividual
located in: GAZ_00006911
imported from: gaz.owl
database_cross_reference: INSDC:country:american samoa

United States Virgin Islands
type: Class
subclass of: Unincorporated Territory (USA)
type: NamedIndividual
located in: GAZ_00003960
imported from: gaz.owl

British Virgin Islands
type: Class
subclass of: British Overseas Territory
type: NamedIndividual
located in: GAZ_00003960
imported from: gaz.owl
database_cross_reference: INSDC:country:british virgin islands

British Overseas Territory
type: Class
subclass of: geographic location
type: NamedIndividual
imported from: gaz.owl

British Indian Ocean Territory
type: Class
subclass of: British Overseas Territory
type: NamedIndividual
imported from: gaz.owl

Cayman Islands
type: Class
subclass of: British Overseas Territory
type: NamedIndividual
located in: GAZ_00003772
imported from: gaz.owl
database_cross_reference: INSDC:country:cayman islands

Gibraltar
type: Class
subclass of: British Overseas Territory
type: NamedIndividual
located in: GAZ_00002949
imported from: gaz.owl

Montserrat
type: Class
subclass of: British Overseas Territory
type: NamedIndividual
located in: GAZ_00003949
imported from: gaz.owl

South Georgia and South Sandwich Islands
type: Class
subclass of: British Overseas Territory
type: NamedIndividual
imported from: gaz.owl
database_cross_reference: INSDC:country:south georgia and the south sandwich islands

Province (Burundi)
type: Class
subclass of: NCIT C25632
type: NamedIndividual
located in: GAZ_00001090

populated place, Burundi
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00001090

populated place, Mauritania
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00000583

populated place, Alaska
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00002521

Province (Armenia)
type: Class
subclass of: NCIT C25632
type: NamedIndividual
located in: GAZ_00004094
comment: Villages and Cities from SALB; divided into communities from http://www.armstat.am/en/?nid=52.

populated place, Armenia
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00004094

Autonomous Region (Portugal)
type: Class
subclass of: subnational region
type: NamedIndividual
located in: Portuguese Republic

populated place, mainland Portugal
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00004126

Union Territory (India)
type: Class
subclass of: NCIT C89811
type: NamedIndividual
located in: GAZ_00002839

populated place, Ghana
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00000908

Province (Iran)
type: Class
subclass of: NCIT C25632
type: NamedIndividual
located in: GAZ_00004474

populated place, Iran
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00004474

populated place, Iraq
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00004483

populated place, Canary Islands
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00001139

populated place, Philippines
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00004525

Province (Sri Lanka)
type: Class
subclass of: NCIT C25632
type: NamedIndividual
located in: GAZ_00003924

populated place, Sri Lanka
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00003924

populated place, Slovenia
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00002955

Metropolitan City (Republic of Korea)
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00002802

populated place, Kenya
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00001101

Province (Kenya)
type: Class
subclass of: NCIT C25632
type: NamedIndividual
located in: GAZ_00001101
comment: When an authorative list of Divisions of the new (2007) Districts is available this needs revision.

Region (New Zealand)
type: Class
subclass of: subnational region
type: NamedIndividual
located in: GAZ_00000469

populated place, New Zealand
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00000469

Region (Azerbaijan)
type: Class
subclass of: subnational region
type: NamedIndividual
located in: GAZ_00004941

Province (Uzbekistan)
type: Class
subclass of: NCIT C25632
type: NamedIndividual
located in: GAZ_00004979

populated place, Uzbekistan
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00004979

Province (Kazakhstan)
type: Class
subclass of: NCIT C25632
type: NamedIndividual
located in: GAZ_00004999

populated place, Kazakhstan
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00004999

populated place, Ukraine
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00002724

populated place, Guadeloupe
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00067135

Province (Poland)
type: Class
subclass of: NCIT C25632
type: NamedIndividual
located in: GAZ_00002939

populated place, Poland
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00002939

Province (Democratic Republic of Congo)
type: Class
subclass of: NCIT C25632
type: NamedIndividual
located in: GAZ_00001086
comment: The provinces are under reorganization, this list is part new part old. See: http://www.statoids.com/ucd.html

populated place, Democratic Republic of Congo
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00001086

populated place, Republic of Congo
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00001088

Province (Zimbabwe)
type: Class
subclass of: NCIT C25632
type: NamedIndividual
located in: GAZ_00001106

populated place, Zimbabwe
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00001106

populated place, Serbia
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00002957

Autonomous Province (Serbia)
type: Class
subclass of: NCIT C25632
type: NamedIndividual
located in: GAZ_00002957

populated place, Greece
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00002945

populated place, Guatemala
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00002936

populated place, French Guiana
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00002516
database_cross_reference: INSDC:country:french guiana

populated place, Honduras
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00002894

populated place, Papua New Guinea
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00003922

New Caledonia
type: Class
subclass of: Collectivite d'outre-mer
type: NamedIndividual
imported from: gaz.owl
database_cross_reference: INSDC:country:new caledonia

Province (New Caledonia)
type: Class
subclass of: NCIT C25632
type: NamedIndividual
located in: New Caledonia

populated place, Nicaragua
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00002978

populated place, Nigeria
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00000912

Province (Pakistan)
type: Class
subclass of: NCIT C25632
type: NamedIndividual
located in: GAZ_00005246

Territory (Pakistan)
type: Class
subclass of: NCIT C89811
type: NamedIndividual
located in: GAZ_00005246

populated place, Pakistan
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00005246

populated place, Dominican Republic
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00003952

populated place, Sierra Leone
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00000914

populated place, Surinam
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00002525

Province (Republic of China)
type: Class
subclass of: NCIT C25632
type: NamedIndividual
located in: GAZ_00005341

populated place, Uganda
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00001102

Province (Madagascar)
type: Class
subclass of: NCIT C25632
type: NamedIndividual
located in: GAZ_00001108

populated place, Madagascar
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00001108

populated place, Malawi
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00001105

populated place, Malaysia
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00003902

populated place, Mali
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00000584

populated place, Mauritius
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00003745

populated place, Morocco
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00000565

populated place, Nepal
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00004399

populated place, Colombia
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00002929

populated place, Central African Republic
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00001089

Province (Ecuador)
type: Class
subclass of: NCIT C25632
type: NamedIndividual
located in: GAZ_00002912

populated place, Egypt
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: Egypt

Province (Dominican Republic)
type: Class
subclass of: NCIT C25632
type: NamedIndividual
located in: GAZ_00003952

Province (Gabon)
type: Class
subclass of: NCIT C25632
type: NamedIndividual
located in: GAZ_00001092

populated place, Gabon
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00001092

populated place, Cote d'Ivoire
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00000906

Saint Martin
type: Class
subclass of: Collectivite d'outre-mer
type: NamedIndividual
located in: GAZ_00044587
imported from: gaz.owl

Pitcairn, Henderson, Ducie and Oeno Islands
type: Class
subclass of: British Overseas Territory
type: NamedIndividual
located in: GAZ_00051089
imported from: gaz.owl

Territory of Ashmore and Cartier Islands
type: Class
subclass of: Territory (Australia)
type: NamedIndividual
imported from: gaz.owl
database_cross_reference: INSDC:country:ashmore and cartier islands

Territory of Norfolk Island
type: Class
subclass of: Territory (Australia)
type: NamedIndividual
imported from: gaz.owl

Australian Antarctic Territory
type: Class
subclass of: Territory (Australia)
subclass of: Territory, Antarctica
type: NamedIndividual
imported from: gaz.owl

Territory, Antarctica
type: Class
subclass of: NCIT C89811
type: NamedIndividual
located in: Antarctica

Territory of Christmas Island
type: Class
subclass of: Territory (Australia)
type: NamedIndividual
imported from: gaz.owl

Territory of the Cocos (Keeling) Islands
type: Class
subclass of: Territory (Australia)
type: NamedIndividual
imported from: gaz.owl

Coral Sea Islands Territory
type: Class
subclass of: Territory (Australia)
type: NamedIndividual
located in: GAZ_00008996
imported from: gaz.owl
database_cross_reference: INSDC:country:coral sea islands

Heard Island and McDonald Islands Territory
type: Class
subclass of: Territory (Australia)
type: NamedIndividual
imported from: gaz.owl

Commonwealth of Puerto Rico
type: Class
subclass of: Unincorporated Territory (USA)
type: NamedIndividual
located in: GAZ_00003772
imported from: gaz.owl

United States Minor Outlying Islands
type: Class
subclass of: Unincorporated Territory (USA)
type: NamedIndividual
imported from: gaz.owl

Wallis and Futuna Islands
type: Class
subclass of: Collectivite d'outre-mer
type: NamedIndividual
located in: GAZ_00007192
imported from: gaz.owl
database_cross_reference: INSDC:country:wallis and futuna

populated place, Bhutan
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00003920

populated place, Costa Rica
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00002901

populated place, Saudi Arabia
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00005279

Province (Saudi Arabia)
type: Class
subclass of: NCIT C25632
type: NamedIndividual
located in: GAZ_00005279

populated place, Algeria
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00000563

populated place, Romania
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00002951

populated place, Trinidad and Tobago
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00003767

populated place, Iceland
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00000843

populated place, Sudan
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00000560

Province (Tajikistan)
type: Class
subclass of: NCIT C25632
type: NamedIndividual
located in: GAZ_00006912

populated place, Tajikistan
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00006912

populated place, Georgia
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00004942

populated place, Dijubti
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00000582

populated place, Azores
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: Azores

populated place, Senegal
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00000913

populated place, Jamaica
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00003781

populated place, Lebanon
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00002478

Province (Cambodia)
type: Class
subclass of: NCIT C25632
type: NamedIndividual
located in: GAZ_00006888

populated place, Netherlands Antiles
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00004019

State (Venezuela)
type: Class
subclass of: NCIT C87194
type: NamedIndividual
located in: GAZ_00002931

populated place, Venezuala
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00002931

Anguilla
type: Class
subclass of: British Overseas Territory
type: NamedIndividual
located in: GAZ_00003949
imported from: gaz.owl
database_cross_reference: INSDC:country:anguilla

Province (North Korea)
type: Class
subclass of: NCIT C25632
type: NamedIndividual
located in: GAZ_00002801

Province (Zambia)
type: Class
subclass of: NCIT C25632
type: NamedIndividual
located in: GAZ_00001107

Province (Angola)
type: Class
subclass of: NCIT C25632
type: NamedIndividual
located in: GAZ_00001095

Province (Mozambique)
type: Class
subclass of: NCIT C25632
type: NamedIndividual
located in: GAZ_00001100

Province (Afghanistan)
type: Class
subclass of: NCIT C25632
type: NamedIndividual
located in: GAZ_00006882

Province (Mongolia)
type: Class
subclass of: NCIT C25632
type: NamedIndividual
located in: GAZ_00008744

Province (Laos)
type: Class
subclass of: NCIT C25632
type: NamedIndividual
located in: GAZ_00006889

Province (Solomon Islands)
type: Class
subclass of: NCIT C25632
type: NamedIndividual
located in: GAZ_00005275

Gaza Strip
type: Class
subclass of: District (Palestinian Territories)
type: NamedIndividual
imported from: gaz.owl
database_cross_reference: INSDC:country:gaza strip

West Bank
type: Class
subclass of: District (Palestinian Territories)
type: NamedIndividual
imported from: gaz.owl
database_cross_reference: INSDC:country:west bank

District (Palestinian Territories)
type: Class
subclass of: geographic location
type: NamedIndividual
located in: GAZ_00002475

Tuvalu
type: Class
subclass of: geographic location
type: NamedIndividual
located in: GAZ_00006915
database_cross_reference: INSDC:country:tuvalu

populated place, Somalia
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00001104

populated place, Angola
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00001095

populated place, Zambia
type: Class
subclass of: NCIT C80234
type: NamedIndividual
type: city
located in: GAZ_00001107

populated place, Antigua and Barbuda
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00006883

populated place, North Korea
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00002801

Directly Governed City
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00002801
user interface label: directly governed city (North Korea)

populated place, Cambodia
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00006888

populated place, Yemen
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00005284

populated place, Peru
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00002932

populated place, Paraguay
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00002933

populated place, Montenegro
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00006898

populated place, Bolivia
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00002511

populated place, American Samoa
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: American Samoa

populated place, Andorra
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00002948

populated place, Azerbaijan
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00004941

populated place, Liechtenstein
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00003858

populated place, Burkina Faso
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00000905

populated place, Benin
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00000904

populated place, Botswana
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00001097

Nanumanga District
type: Class
subclass of: Tuvalu
type: NamedIndividual
imported from: gaz.owl

Province (Oman)
type: Class
subclass of: NCIT C25632
type: NamedIndividual
located in: GAZ_00005283

populated place, Palestinian Territories
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00002475

Dependancy (Grenada)
type: Class
subclass of: geographic location
type: NamedIndividual
located in: GAZ_02000564
located in: GAZ_02000573

Australasian Mediterranean Sea
type: Class
subclass of: Oceans and Seas
type: NamedIndividual
imported from: gaz.owl

Arctic Ocean region
type: Class
subclass of: Oceans and Seas
type: NamedIndividual
imported from: gaz.owl

Atlantic Ocean region
type: Class
subclass of: Oceans and Seas
type: NamedIndividual
imported from: gaz.owl

Pacific Ocean region
type: Class
subclass of: Oceans and Seas
type: NamedIndividual
imported from: gaz.owl

European Seas
type: Class
subclass of: Oceans and Seas
type: NamedIndividual
imported from: gaz.owl

Indian Ocean region
type: Class
subclass of: Oceans and Seas
type: NamedIndividual
imported from: gaz.owl

populated place, Cameroon
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00001093

Guadeloupe Region
type: Class
subclass of: Region d'outre-mer
type: NamedIndividual
located in: GAZ_00003949
imported from: gaz.owl

Martinique Region
type: Class
subclass of: Region d'outre-mer
type: NamedIndividual
located in: GAZ_00003951
imported from: gaz.owl

French Guiana Region
type: Class
subclass of: Region d'outre-mer
type: NamedIndividual
imported from: gaz.owl

Reunion Region
type: Class
subclass of: Region d'outre-mer
type: NamedIndividual
imported from: gaz.owl

biogeographic location
type: Class
subclass of: geographic location
type: NamedIndividual
imported from: gaz.owl

floristic kingdom
type: Class
subclass of: biogeographic location
type: NamedIndividual
imported from: gaz.owl

Takhtajan's floristic provinces
type: Class
subclass of: floristic kingdom
type: NamedIndividual
imported from: gaz.owl

Neotropical Kingdom
type: Class
subclass of: Takhtajan's floristic provinces
type: NamedIndividual
imported from: gaz.owl

Special Territory (Indonesia)
type: Class
subclass of: NCIT C89811
type: NamedIndividual
located in: GAZ_00003727

Papua Province
type: Class
subclass of: Province (Indonesia)
type: NamedIndividual
located in: GAZ_00005200
imported from: gaz.owl

State (Myanmar)
type: Class
subclass of: NCIT C87194
type: NamedIndividual
located in: GAZ_00006899

populated place, Macedonia
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00006895

Province (Vanuatu)
type: Class
subclass of: NCIT C25632
type: NamedIndividual
located in: GAZ_00006918

populated place, Moldova
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00003897

populated place, Syria
type: Class
subclass of: NCIT C80234
type: NamedIndividual
located in: GAZ_00002474

GSCID-BRC Project and Sample Application Standard
type: Class
subclass of: GENEPIO_0002073
user interface label: GSCID-BRC standard
has curation status: IAO_0000428
definition: The GSCID-BRC Project and Sample Application Standard captures standardized human pathogen and vector sequencing metadata to support epidemiologic and genotype-phenotype association studies for human infectious diseases.
editor note: The NIAID page for specifications has a broken link for Core Project. This is the existing page: https://www.niaid.nih.gov/research/dmid-metadata-standards-core-project Link page is: https://www.niaid.nih.gov/research/human-pathogen-and-vector-sequencing-metadata-standards
definition editor: Damion Dooley
IAO_0000600: This standard was developed by representatives of the Genome Sequencing Centers for Infectious Diseases (GSCIDs), the Bioinformatics Resource Centers (BRCs), and NIAID and informed by discussions and input with numerous collaborating scientists.

Minimum Information about any (x) Sequence (MIxS)
type: Class
subclass of: GENEPIO_0002075
user interface label: MIxS standard
has curation status: IAO_0000122
definition: MixS is a unified standard for describing sequence data provided by the Genomic Standards Consortium (GSC)
definition editor: Damion Dooley

Minimum information about a marker gene sequence
type: Class
subclass of: GENEPIO_0002075
user interface label: MIMARKS standard
definition: The "minimum information about a marker gene sequence" (MIMARKS) is a standard developed by the Genomic Standards Consortium (GSC) for reporting marker gene sequences.
definition source: http://www.nature.com/nbt/journal/v29/n5/full/nbt.1823.html

other (metadata value)
type: Class
subclass of: IAO_0000027
has curation status: IAO_0000428
definition: A data item that indicates for the given categorical variable, a respondent has chosen an other or additional response not listed.
editor note: This class cannot be referred to directly as a subclass of more than one class without involving inference from the respective classes. Instances of it may exist as a kind of metadata. Usually a reference to a parent categorical class, but not a subordinate, carries the same information.
definition editor: Damion Dooley

other relevance
type: Class
subclass of: project relevance

other specimen scope
type: Class
subclass of: OBI_0001884
user interface label: other
has curation status: IAO_0000122
definition: Other: specify the sample scope that was used.
definition editor: Damion Dooley
definition source: https://www.ncbi.nlm.nih.gov/books/NBK54364/

other material derived from specimen
type: Class
subclass of: OBI_0001882
user interface label: other material
has curation status: IAO_0000122
definition: Other: specify the material that was used.
definition editor: Damion Dooley
definition source: https://www.ncbi.nlm.nih.gov/books/NBK54364/

other capture type
type: Class
subclass of: OBI_0001899
has curation status: IAO_0000122
definition: A data item that is a free text description provided to indicate a target capture specification not covered by the other types.
definition editor: Damion Dooley
definition source: https://www.ncbi.nlm.nih.gov/books/NBK54364/

other project method
type: Class
subclass of: OBI_0001896
has curation status: IAO_0000122
definition: Specify the project method
definition editor: Damion Dooley
definition source: https://www.ncbi.nlm.nih.gov/books/NBK54364/

obsolete: draft GenEpiO BioSample standard
type: Class
definition: This is an organizational category for grouping parameters relevant to a biomedical sample.
definition editor: Damion Dooley
term replaced by: GENEPIO_0002083
deprecated: true

obsolete: NCBI antibiogram data item
type: Class
definition: An NCBI antibiogram data item is an antimicrobial susceptibility and resistance datum related to drug resistant pathogens. This information is provided within an antibiogram table on BioSample records.
definition editor: Damion Dooley
has obsolescence reason: IAO_0000227
term replaced by: NCBI Antibiogram standard
deprecated: true

American HIPPA Protected Health Information (PHI) guidelines
type: Class
subclass of: public health data standard
user interface label: HIPPA PHI guideline
definition: The American HIPPA Protected Health Information (PHI) guidelines cover information, including demographic information, which relates to: - the individual’s past, present, or future physical or mental health or condition, - the provision of health care to the individual, or - the past, present, or future payment for the provision of health care to the individual, and that identifies the individual or for which there is a reasonable basis to believe can be used to identify the individual. Protected health information includes many common identifiers (e.g., name, address, birth date, Social Security Number) when they can be associated with the health information listed above."
definition source: https://en.wikipedia.org/wiki/Health_Insurance_Portability_and_Accountability_Act

obsolete: subject species
type: Class
definition: The natural (as opposed to laboratory) full scientific taxonomic name of a subject related to a given investigation, study and/or specimen.
definition editor: Damion Dooley
has obsolescence reason: IAO_0000227
term replaced by: subject organism (host) taxonomic species
deprecated: true

obsolete: intersex
type: Class
term replaced by: http://purl.obolibrary.org/obo/NCIT_C45908
database_cross_reference: NCBI BioSample: intersex
deprecated: true

obsolete: isolation date
type: Class
term as in existing standard: Isolation date
term source: inferred from BCCDC interviews
definition: date the strain was isolated
definition editor: Damion Dooley
term replaced by: culture isolation date
deprecated: true

culture isolation date
type: Class
subclass of: isolate history item
metadata section: Collection
term as in existing standard: Culture isolation date
term source: suggested in metadata feedback
example of usage: year/month/day
definition: A culture isolation date is a date-time entity marking the end of a process in which a sample is isolated as a single colony or non-mixture culture
definition editor: Damion Dooley
definition source: GROUP: IRIDA Ontology (Morag)
in_subset: core slim.owl

culture frozen date
type: Class
subclass of: isolate history item
metadata section: Collection
term as in existing standard: Frozen date
term source: NML Labware LIMS
example of usage: year/month/day
definition: A culture frozen date is a date-time entity marking the beginning of a process in which a sample culture is frozen for preservation.
definition editor: Damion Dooley
definition source: GROUP: IRIDA Ontology (Emma)
in_subset: core slim.owl

isolate received date
type: Class
subclass of: isolate history item
metadata section: Collection
term as in existing standard: Received date
term source: NML Labware LIMS
example of usage: year/month/day
definition: A date which describes when a laboratory received an isolate.
definition source: NML LIMS
in_subset: core slim.owl

isolate upload date
type: Class
subclass of: isolate history item
metadata section: Collection
term as in existing standard: Upload date
term source: NML Labware LIMS
example of usage: month/day/year
definition: A date which describes when the isolate was entered into the database.
definition source: NML LIMS
database_cross_reference: PulseNet: UploadDate
in_subset: core slim.owl

subject anatomical site
type: Class
subclass of: portion of material
subclass of: Restriction
  on property: part of
  some values from: GENEPIO_0002077
metadata section: Pathogen Isolate
term source: inferred from BCCDC interviews
example of usage: gut, spine, tongue, lung
definition: Name of body site where the specimen was obtained from, such as a specific organ or tissue.
editor note: Damion Dooley's note: Although term mentions "site" in label, this cannot be placed under "site" as it is intended to refer to organism material, and leads to unsatisfiable terms otherwise.
definition source: GROUP: MIxS
in_subset: core slim.owl

subject health status at time of specimen collection
type: Class
subclass of: GENEPIO_0002018
user interface feature: depth:1
user interface feature: order: NCIT:C115935 # healthy NCIT:C25610 # pathologic NCIT:C28554 # deceased
example of usage: diseased
has curation status: IAO_0000428
definition: Health or disease status of a given subject at time of specimen collection.
editor note: Currently this does not differ from the 'subject health status (GSCID-BRC)' item. It may be revised to have more options in the future.
definition editor: Damion Dooley

specimen source context
type: Class
subclass of: specimen datum
subclass of: Restriction
  on property: has component
  max qualified cardinality: 1
  on class: GENEPIO_0002174
subclass of: Restriction
  on property: has component
  max qualified cardinality: 1
  on class: Class
    intersection of: OBI_0001930
    intersection of: Restriction
      on property: specifies value of
      some values from: outbreak exposure event location
metadata section: Environmental Isolate
example of usage: sediment, chicken feces, cheese
has curation status: IAO_0000428
definition: Describes the physical, environmental and/or local geographical source of the biological sample from which the sample was derived.
definition editor: Damion Dooley
definition source: NCBI Biosample

subject body product
type: Class
subclass of: portion of material
subclass of: Restriction
  on property: produced by
  some values from: GENEPIO_0002077
metadata section: Pathogen Isolate
example of usage: feces, cerebral spinal fluid (CSF)
has curation status: IAO_0000428
definition: Substance produced by the body, e.g. stool, mucus, where the specimen was obtained from.
definition editor: Damion Dooley

collection depth datum
type: Class
subclass of: environmental datum
metadata section: Environmental Isolate
term as in existing standard: Geographic location depth
term source: GROUP: MIxS
example of usage: value (5m)
definition: Please refer to the definitions of depth in the environmental packages
definition source: GROUP: MIxS
in_subset: core slim.owl

obsolete: specimen source environmental material
type: Class
definition: The environmental material level refers to the material that was displaced by the sample, or material in which a sample was embedded, prior to the sampling event. Environmental material terms are generally mass nouns. Examples include: air, soil, or water. EnvO (v 2013-06-14) terms can be found via the link: www.environmentontology.org/Browse-EnvO
term replaced by: environmental material
deprecated: true

subject sex specification
type: Class
subclass of: OBI_0001930
subclass of: Restriction
  on property: specifies value of
  some values from: PATO_0001894
has curation status: IAO_0000428
definition: A subject sex is the phenotypic sex of given subject (human or animal) related to a given investigation, study, and/or specimen.
definition editor: Damion Dooley
comment: Gender is not used because it is a term referencing human social and cultural convention.

specimen collection site land use
type: Class
subclass of: environmental datum
metadata section: Environmental Isolate
term as in existing standard: Land use where sample was taken
term source: Environment Canada Metadata
example of usage: descriptive; type of human use (park, farm, urban)
definition: Human use of land involving the management and modification of natural environment or wilderness into built environment.
definition source: URI: http://en.wikipedia.org/wiki/Land_use
in_subset: core slim.owl

fecal indicator bacteria count
type: Class
subclass of: STATO_0000047
subclass of: Restriction
  on property: has measurement unit label
  some values from: Class
    union of: UO_0000210
    union of: UO_0000212
subclass of: Restriction
  on property: is about
  some values from: GENEPIO_0002232
metadata section: Environmental Isolate
term as in existing standard: Fecal Indicator Bacteria Number
term source: Environment Canada Metadata
example of usage: 12,456 cfu
definition: Number of indicator micro-organisms (colony forming units) present in a sample that have been used to suggest the presence of pathogens.
definition source: URI: http://www.who.int/water_sanitation_health/dwq/iwachap13.pdf
in_subset: core slim.owl

conductivity measurement datum
type: Class
subclass of: environmental datum
metadata section: Environmental Isolate
term as in existing standard: Conductivity
term source: GROUP: MIxS
example of usage: milliSiemens per centimeter
definition: An environmental datum which describes the electrical conductivity of water.
definition source: GROUP: MIxS enviro package
in_subset: core slim.owl

dissolved oxygen concentration
type: Class
subclass of: environmental datum
metadata section: Environmental Isolate
term as in existing standard: Dissolved oxygen
term source: GROUP: MIxS
example of usage: micromole per kilogram
definition: An environmental datum which describes the concentration of dissolved oxygen in a sample.
definition source: GROUP: MIxS enviro package
in_subset: core slim.owl

the Global Microbial Identifier Minimum Data for Matching (MDM) Standard
type: Class
subclass of: NCIT C103180
user interface label: GMI MDM standard
has curation status: IAO_0000428
definition: The Global Microbial Identifier "Minimum data for Matching" (MDM) standard is a standard that defines essential contextual data fields to be included in genomic sequence repository records.
definition editor: Damion Dooley

soluble inorganic material
type: Class
subclass of: test specification
metadata section: Environmental Isolate
term as in existing standard: Soluble inorganic material
term source: GROUP: MIxS
example of usage: soluble organic material name;measurement value
definition: A test specification which describes the concentration of substances such as ammonia, road-salt, sea-salt, cyanide, hydrogen sulfide, thiocyanates and thiosulfate in a sample.
definition source: GROUP: MIxS enviro package
in_subset: core slim.owl

soluble inorganic material concentration
type: Class
subclass of: environmental datum
metadata section: Environmental Isolate
term as in existing standard: Soluble inorganic material
term source: GROUP: MIxS
in_subset: core slim.owl

nitrite concentration
type: Class
subclass of: environmental datum
metadata section: Environmental Isolate
term as in existing standard: Nitrite
term source: GROUP: MIxS
example of usage: micromole per liter
definition: An environmental datum which describes the concentration of nitrite of a sample.
definition source: GROUP: MIxS enviro package
in_subset: core slim.owl

nitrate concentration
type: Class
subclass of: environmental datum
metadata section: Environmental Isolate
term as in existing standard: Nitrate
term source: GROUP: MIxS
example of usage: micromole per liter
definition: An environmental datum which describes the concentration of nitrate of a sample.
definition source: GROUP: MIxS enviro package
in_subset: core slim.owl

total phosphorous concentration
type: Class
subclass of: environmental datum
metadata section: Environmental Isolate
term as in existing standard: Total phosphorous
term source: GROUP: MIxS
example of usage: micromole per liter
definition: An environmental datum which describes the total phosphorus concentration in a sample.
definition source: GROUP: MIxS enviro package
in_subset: core slim.owl
comment: Total phosphorus concentration, calculated by: total phosphorus = total dissolved phosphorus + particulate phosphorus. Can also be measured without filtering, reported as phosphorus.

stream order categorical measurement datum
type: Class
subclass of: environmental datum
subclass of: Restriction
  on property: has specified value
  some values from: Datatype
    on datatype: unsignedInt
    with restrictions:
      max inclusive: 12
metadata section: Environmental Isolate
term as in existing standard: Stream order
term source: Environment Canada Metadata
example of usage: value, 1-12
definition: Stream order is a measure of the relative size of streams (The smallest tributaries are referred to as first-order streams, while the largest river in the world, the Amazon, is a twelfth-order waterway).
definition source: GROUP: Environment Canada Metadata
in_subset: core slim.owl

bacteria density
type: Class
subclass of: environmental datum
metadata section: Environmental Isolate
term as in existing standard: Density of bacteria in sample
term source: Environment Canada Metadata
example of usage: OD reading or cfu's or cells per millilitre
definition: An environmental datum which describes the number of bacteria in a sample.
definition source: GROUP: Environment Canada Metadata
in_subset: core slim.owl

primary enzyme (LMAAI)
type: Class
subclass of: lab test datum
metadata section: Lab Analytic
term as in existing standard: Host Primary Enzyme
term source: PulseNet Data Capture
example of usage: pick list (XbaI, BlnI)
definition: Restriction enzyme for first characterization
definition source: GROUP: IRIDA Ontology (Emma)

PFGE test specification
type: Class
subclass of: test specification
subclass of: Restriction
  on property: has component
  max qualified cardinality: 1
  on class: PFGE primary test
subclass of: Restriction
  on property: has component
  max qualified cardinality: 1
  on class: PFGE secondary test
has curation status: IAO_0000428
in_subset: core slim.owl

PFGE primary test
type: Class
subclass of: PFGE test specification
metadata section: Lab Analytic
term as in existing standard: Host Primary PFGE Pattern
term source: NML LIMS
has curation status: IAO_0000428
definition: First PFGE pattern from given diagnostic restriction enzyme
definition source: GROUP: IRIDA Ontology (Emma)
in_subset: core slim.owl

secondary enzyme (LMACI)
type: Class
subclass of: lab test datum
metadata section: Lab Analytic
term as in existing standard: Host Secondary Enzyme
term source: PulseNet Data Capture
example of usage: pick list (XbaI, BlnI)
definition: Restriction enzyme for second characterization
definition source: GROUP: IRIDA Ontology (Emma)
in_subset: core slim.owl

PFGE secondary test
type: Class
subclass of: PFGE test specification
metadata section: Lab Analytic
term as in existing standard: Host Secondary PFGE Pattern
term source: NML LIMS
has curation status: IAO_0000428
definition: Second PFGE pattern from given diagnostic restriction enzyme
definition source: GROUP: IRIDA Ontology (Emma)
in_subset: core slim.owl

MLST clonal complex
type: Class
subclass of: test specification
metadata section: Lab Analytic
term as in existing standard: MLST Clonal Complex
term source: inferred from BCCDC interviews and Bionumerics
example of usage: pick list?
definition: Multilocus sequence typing (MLST) is a technique in molecular biology for the typing of multiple loci. The procedure characterizes isolates of microbial species using the DNA sequences of internal fragments of multiple housekeeping genes. Sequence types are grouped into clonal complexes by their similarity to a central allelic profile (genotype). As such, clonal complexes represent sequence types that share a number of identical alleles e.g. 5/7
definition source: URI: http://en.wikipedia.org/wiki/Multilocus_sequence_typing ; http://eburst.mlst.net/3.asp
in_subset: core slim.owl

MLST sequence typing
type: Class
subclass of: diagnostic test
metadata section: Lab Analytic
term as in existing standard: MLST Sequence Type
term source: inferred from BCCDC interviews and Bionumerics
example of usage: pick list?
definition: Multilocus sequence typing (MLST) is a technique in molecular biology for the typing of multiple loci. The procedure characterizes isolates of microbial species using the DNA sequences of internal fragments of multiple housekeeping genes. For each housekeeping gene, the different sequences present within a bacterial species are assigned as distinct alleles and, for each isolate, the alleles at each of the loci define the allelic profile or sequence type (ST).
definition source: Multilocus sequence typing
in_subset: core slim.owl

core genome fingerprinting assay
type: Class
subclass of: OBI_0000070
has curation status: IAO_0000428
definition: The process of fingerprinting the core genome of a bacteria.
editor note: Add under upcomming OBI "DNA fingerprinting assay".
definition editor: Damion Dooley
IAO_0000600: Some bacteria like E coli have a highly variable genome, and so to type them methods must focus on typing the core genome that is common to all strains.
in_subset: core slim.owl

CGF type
type: Class
subclass of: test specification
metadata section: Lab Analytic
term as in existing standard: CGF type
term source: inferred from BCCDC interviews
example of usage: pick list
has curation status: IAO_0000428
definition: Output of CGF.
definition source: GROUP: IRIDA Ontology (Emma)
in_subset: core slim.owl

16S rRNA sequencing
type: Class
subclass of: OBI_0001177
metadata section: Lab Analytic
term as in existing standard: 16S rRNA sequencing
term source: inferred from BCCDC interviews
definition: 16S ribosomal RNA sequencing is a sequencing method used to identify and compare bacteria present within a given sample. 16S rRNA gene sequencing is a well-established method for studying phylogeny and taxonomy of samples from complex microbiomes or environments that are difficult or impossible to study.
definition source: URI: http://www.illumina.com/applications/microbiology/microbial-sequencing-methods/16S-rrna-sequencing.html
in_subset: core slim.owl

Stx toxin type datum
type: Class
subclass of: IAO_0000109
subclass of: Restriction
  on property: is about
  some values from: NCIT C1225
metadata section: Lab Analytic
term as in existing standard: Stx toxin type
term source: metadata feedback
example of usage: Stx1 or Stx2
definition: A pathogenic shiga toxin produced by STEC E. coli.
definition source: GROUP: IRIDA Ontology (Emma)
in_subset: core slim.owl

Stx toxin subtype datum
type: Class
subclass of: IAO_0000109
subclass of: Restriction
  on property: is about
  some values from: NCIT C1225
metadata section: Lab Analytic
term as in existing standard: Stx toxin subtype
term source: metadata feedback
example of usage: stx1a, stx1c
definition: A shiga toxin variant.
definition source: GROUP: IRIDA Ontology (Emma)
in_subset: core slim.owl

Stx1 Toxin PCR result
type: Class
subclass of: IAO_0000109
subclass of: Restriction
  on property: is about
  some values from: OMIT_0020917
metadata section: Lab Analytic
term as in existing standard: Stx1 Toxin PCR result
term source: NML Labware LIMS
example of usage: CT value?
definition: A qPCR measurement result of Stx1 gene amplification.
definition source: GROUP: IRIDA Ontology (Emma)
in_subset: core slim.owl

Stx1 cell culture level
type: Class
subclass of: IAO_0000109
subclass of: Restriction
  on property: is about
  some values from: OMIT_0020917
metadata section: Lab Analytic
term as in existing standard: Stx1 Cell Culture
term source: NML Labware LIMS
definition: A measurement datum which describes the level of Stx1 toxin derived tissue culture toxicity.
definition source: GROUP: IRIDA Ontology (Emma)
in_subset: core slim.owl

Stx2 Toxin PCR result
type: Class
subclass of: IAO_0000109
subclass of: Restriction
  on property: is about
  some values from: OMIT_0020918
metadata section: Lab Analytic
term as in existing standard: Stx2 Toxin PCR result
term source: NML Labware LIMS
example of usage: CT value?
definition: A qPCR measurement result of Stx2 gene amplification.
definition source: GROUP: IRIDA Ontology (Emma)
in_subset: core slim.owl

Stx2 cell culture level
type: Class
subclass of: IAO_0000109
subclass of: Restriction
  on property: is about
  some values from: OMIT_0020918
metadata section: Lab Analytic
term as in existing standard: Stx2 Cell Culture
term source: NML Labware LIMS
example of usage: value?
definition: A measurement datum which describes the level of Stx2 toxin derived tissue culture toxicity.
definition source: GROUP: IRIDA Ontology (Emma)
in_subset: core slim.owl

AccuProbe culture identification assay
type: Class
subclass of: OBI_0000070
subclass of: Restriction
  on property: has output
  some values from: AccuProbe test result
has curation status: IAO_0000122
definition: An AccuProbe assay that uses a luminometer and DNA probe designed to identify a specific bacteria or fungus species within a culture.
definition editor: Damion Dooley
IAO_0000600: Nucleic acid hybridization tests are based on the ability of complementary nucleic acid strands to specifically align and associate to form stable double-stranded complexes (6). The ACCUPROBE method uses a single-stranded DNA probe with a chemiluminescent label that is complementary to the ribosomal RNA of the target organism. After the ribosomal RNA is released from the target organism, the labeled DNA probe combines with the target organism’s ribosomal RNA to form a stable DNA:RNA hybrid. The Selection Reagent allows for the differentiation of non-hybridized and hybridized probes.The light signal emitted by the DNA:RNA hybrids is measured by a GEN-PROBE luminometer. A positive result is a luminometer reading equal to or greater than the cut-off. A value below this cut-off is the negative result.
in_subset: core slim.owl

AccuProbe Listeria monocytogenes culture identification reagent kit
type: Class
subclass of: OBI_0001879
has curation status: IAO_0000122
definition: An AccuProbe reagent kit for identifying Listeria monocytogenes.
definition editor: Damion Dooley
definition source: URI: http://www.hologic.com/sites/default/files/package%20inserts/103051F-EN-RevC.pdf
in_subset: core slim.owl

AccuProbe test result
type: Class
subclass of: IAO_0000109
subclass of: Restriction
  on property: output of
  some values from: AccuProbe culture identification assay
metadata section: Lab Analytic
term source: NML Labware LIMS
example of usage: positive, negative, not done
definition: A categorical diagnostic result of an AccuProbe test.
definition source: NML LIMS
in_subset: core slim.owl

ribotyping
type: Class
subclass of: diagnostic test
definition: Ribotyping involves the fingerprinting of genomic DNA restriction fragments that contain all or part of the genes coding for the 16S and 23S rRNA. By digesting the genes with a specific restriction enzyme, fragments of different lengths are generated. By performing a Gel electrophoresis with the digested samples, the fragments can be visualised as lines on the gel, where larger fragments are close to the start of the gel, and smaller fragments further down. After blotting onto a matrix and probing, these lines form a unique pattern for each species and can be used to identify the origin of the DNA, almost like a barcode can identify a product.
definition source: Ribotyping
in_subset: core slim.owl

riboprinting
type: Class
subclass of: diagnostic test
definition: This method is based on restriction endonuclease digestion of bacterial chromosomal DNA, followed by Southern hybridization to probes for sequences in the regions of bacterial DNA coding for the 5S-16S-23S (the Escherichia coli rrnB rRNA operon) rRNA operon. The probes have been developed that are directed to highly conserved regions of the rRNA operon present in all eubacteria and can therefore be used for ribotyping most bacteria
definition source: PMC92620
in_subset: core slim.owl

Qualicon (DuPont) RiboPrinter Microbial Characterization System
type: Class
subclass of: OBI_0000968
definition: A device that generates an automated genetic fingerprint of a bacterium from a bacterial suspension.
definition source: PMC92620
in_subset: core slim.owl
comment: an automated system that takes a purified bacterial suspension, lyses the cells, extracts the DNA, restriction endonuclease digests the DNA, separates the digest on a gel, transfers the DNA bands to a membrane, probes the bands with non-radioisotope-labeled, 5S-16S-23S rRNA-specific probes (Southern hybridization), photographs the membrane, and finally compares the bar code-like pattern to databases in order to identify the genus and species.

DuPont identification pattern library
type: Class
subclass of: IAO_0000100
definition: A dataset which is a library of RiboPrinter recognised patterns.
in_subset: core slim.owl

RiboPrinter DUP Number
type: Class
subclass of: IAO_0000109
metadata section: Lab Analytic
term as in existing standard: Riboprinter DUP Number
term source: NML Labware LIMS
example of usage: DUP-PST1-1211
definition: DuPont identification number from the DuPont identification library
definition source: NML LIMS
in_subset: core slim.owl

RiboPrinter DUP similarity
type: Class
subclass of: IAO_0000109
metadata section: Lab Analytic
term as in existing standard: Riboprinter DUP similarity
term source: NML Labware LIMS
example of usage: The identification of an isolate was determined when the corresponding patterns matched one of the patterns of the DuPont Identification library of the RiboPrinter1 with a similarity of >0.85. The similarity threshold for an isolate joining a ribogroup is an adaptive value between 0.90 and 0.96, depending on the size of the ribogroup.
definition: Similarity of pattern to one of the patterns of the DuPont Identification library of the RiboPrinter
definition source: http://www.tandfonline.com/doi/pdf/10.1080/09603120903254041
in_subset: core slim.owl

sequencing run date
type: Class
subclass of: isolate history item
subclass of: laboratory sequencing datum
subclass of: Restriction
  on property: after
  some values from: culture isolation date
metadata section: Sequencing
term as in existing standard: Sequencing Run Date
term source: NML NGS Archive
example of usage: yyyy/mm/dd
definition: Date the sequencing run was performed
definition source: GROUP: IRIDA Ontology (Emma)
in_subset: core slim.owl

sequencing location
type: Class
subclass of: laboratory sequencing datum
metadata section: Sequencing
term as in existing standard: Sequencing Location
term source: inferred from BCCDC interviews
definition: A laboratory sequencing datum which describes the location the sequencing run was performed.
definition source: GROUP: IRIDA Ontology (Emma)
in_subset: core slim.owl

sequencing platform (brand)
type: Class
subclass of: IAO_0000027
metadata section: Sequencing
term as in existing standard: Platform
term source: https://www.ncbi.nlm.nih.gov/books/NBK54984/table/SRA_Glossary_BK.T._platform_descriptor_t/
example of usage: Illumina (MiSeq, HiSeq), PacBio, Ion Torrent, (Roche 454), SOLiD ABI
has curation status: IAO_0000428
definition: A sequencing plaform (brand) is a name of a company that produces sequencer equipment.
definition source: GROUP: IRIDA Ontology (Emma)
in_subset: core slim.owl

sequencing workflow
type: Class
subclass of: laboratory sequencing datum
metadata section: Sequencing
term as in existing standard: Workflow
term source: Derived from Sample Sheet
example of usage: Resequencing, FastQ only
definition: A lab sequencing datum which describes a pre-defined sequence of steps to run the automated sequencing pipeline.
definition source: GROUP: IRIDA Ontology (Emma)
in_subset: core slim.owl

sequencing application
type: Class
subclass of: laboratory sequencing datum
metadata section: Sequencing
term as in existing standard: Application
term source: Derived from Illumina Sample Sheet
example of usage: amplicon sequencing, WGS
definition: A lab sequencing datum which describes a pre-defined sequence of steps to run the automated sequencing pipeline.
definition source: GROUP: IRIDA Ontology (Emma)
in_subset: core slim.owl

obsolete: sequencing assay
type: Class
term source: Derived from Illumina Sample Sheet
definition: the sequencing conditions and the analyte being measured
definition source: GROUP: IRIDA Ontology (Emma)
term replaced by: OBI_0600047
deprecated: true

sequencing chemistry
type: Class
subclass of: laboratory sequencing datum
metadata section: Sequencing
term as in existing standard: Chemistry
term source: Derived from Illumina Sample Sheet
example of usage: amplicon, resequencing (WGS)
definition: A laboratory sequencing datum which describes the method and chemistry used to determine the order of nucleotides in a DNA molecule.
definition source: GROUP: IRIDA Ontology (Emma)
in_subset: core slim.owl

read length
type: Class
subclass of: laboratory sequencing datum
metadata section: Sequencing
term as in existing standard: Read Length
term source: Derived from Illumina Sample Sheet
example of usage: 151, 251
definition: A datum of the number of base pairs per read.
definition source: GROUP: IRIDA Ontology (Emma)
in_subset: core slim.owl

obsolete: GSCID-BRC data item
type: Class
definition: A GSCID/BRC data item is a field in one of the GSCID/BRC Project and Sample Application Standard subsets.
definition editor: Damion Dooley
has obsolescence reason: IAO_0000103
deprecated: true

sequencing run multiplex identifiers
type: Class
subclass of: laboratory sequencing datum
metadata section: Sequencing
term as in existing standard: Multiplex identifiers
term source: Derived from Illumina Sample Sheet
example of usage: S017
definition: Molecular barcodes, called Multiplex Identifiers (MIDs), that are used to specifically tag unique samples in a sequencing run. Sequence should be reported in uppercase letters
definition source: GROUP: MIxS
in_subset: core slim.owl

sequencing run sample identifier
type: Class
subclass of: IAO_0000577
metadata section: Sequencing
term as in existing standard: Sample Name
term source: Derived from Illumina Sample Sheet specification: http://support.illumina.com/content/dam/illumina-support/documents/documentation/system_documentation/miseq/miseq-sample-sheet-quick-ref-guide-15028392-j.pdf
example of usage: 1,2,3, AX234, etc.
example of usage: Control1, Tank1, Froglet1
definition: A sequencing run sample identifier is an alphanumeric identifier for a sample. In bioinformatics processing this identifier is assigned to a sample in order to track it through the process of sequencing and analysis.
definition source: GROUP: IRIDA Ontology (Emma)
database_cross_reference: Illumina SampleSheet: Sample_ID
database_cross_reference: PulseNet: SubmittedNumber
has exact synonym: sample name
has exact synonym: sample title
in_subset: core slim.owl

sequencing count of chemistry cycles
type: Class
subclass of: laboratory sequencing datum
metadata section: Sequencing
term as in existing standard: Number of cycles
term source: Derived from Illumina Sample Sheet
example of usage: 500
definition: Number of sequencing chemistry cycles
definition source: GROUP: IRIDA Ontology (Emma)
in_subset: core slim.owl

sequencing kit
type: Class
subclass of: OBI_0000047
metadata section: Sequencing
term as in existing standard: Sequencing Kit
term source: Derived from Illumina Sample Sheet
example of usage: MiSeq reagent kit
definition: Pre-filled, ready-to-use reagent cartridges. Used to produce improved chemistry, cluster density and read length as well as improve quality (Q) scores. Reagent components are encoded to interact with the sequencing system to validate compatibility with user-defined applications.
definition source: GROUP: IRIDA Ontology (Emma)
in_subset: core slim.owl

sequencing kit version
type: Class
subclass of: laboratory sequencing datum
metadata section: Sequencing
term as in existing standard: Sequencing Kit version
term source: Derived from Illumina Sample Sheet
example of usage: v2, v3
definition: A string datum which is the version/configuration of the reagent cartidge.
definition source: GROUP: IRIDA Ontology (Emma)
in_subset: core slim.owl

adapter sequence
type: Class
subclass of: laboratory sequencing datum
metadata section: Sequencing
term as in existing standard: Adapters
term source: Derived from Illumina Sample Sheet
example of usage: adapter A and B sequence
definition: Adapters provide priming sequences for both amplification and sequencing of the sample-library fragments. Both adapters should be reported; in uppercase letters
definition source: GROUP: MIxS
in_subset: core slim.owl

read adapter trimming
type: Class
subclass of: laboratory sequencing datum
metadata section: Sequencing
term as in existing standard: Adapter Trimming
term source: Derived from Illumina Sample Sheet
definition: The removal of adapter sequences from demultiplexed data reads
definition source: GROUP: IRIDA Ontology (Emma)
in_subset: core slim.owl

library preparation kit
type: Class
subclass of: laboratory sequencing datum
metadata section: Sequencing
term source: inferred from BCCDC interviews
example of usage: Illumina metagenomic protocol (part 15044223), with Nextera
definition: Packaged kits (containing adapters, indexes, enzymes, buffers etc), tailored for specific sequencing workflows, which allow the simplified preparation of sequencing-ready libraries for small genomes, amplicons, and plasmids.
definition source: GROUP: IRIDA Ontology (Emma) and http://applications.illumina.com/applications/sequencing/ngs-library-prep.html

number of expected base pairs per genome
type: Class
subclass of: assembly quality control datum
metadata section: Sequencing
term as in existing standard: Number of base pairs
term source: inferred from BCCDC interviews
example of usage: 300 000
definition: The estimated size of the genome prior to sequencing. Of particular importance in the sequencing of (eukaryotic) genome which could remain in draft form for a long or unspecified period.
definition source: GROUP: MIxS
in_subset: core slim.owl

number of reads passing filter
type: Class
subclass of: assembly quality control datum
metadata section: Run QC
term as in existing standard: Number of Reads Passing Filter
term source: Output from MiSeq
example of usage: 0.92
definition: Raw data are filtered to remove any reads that do not meet the overall quality as measured by a chastity filter. The chastity of a base call is calculated as the ratio of the brightest intensity divided by the sum of the brightest and second brightest intensities. Clusters passing filter are represented by PF in analysis reports. Clusters pass filter if no more than one base call in the first 25 cycles has a chastity of < 0.6.
definition source: URI: http://support.illumina.com/sequencing/sequencing_instruments/miseq/questions.html
in_subset: core slim.owl

sequencer flow cell cluster density
type: Class
subclass of: laboratory sequencing datum
metadata section: Run QC
term as in existing standard: Cluster density
term source: Output from MiSeq
example of usage: 800 k/mm^2
definition: Cluster Generation is a process by which libraries amplified into clonal clusters on a flow cell. The density of those clusters in the lane, is the cluster density.
definition source: URI: https://www.broadinstitute.org/files/shared/illuminavids/clusterGenSlides.pdf

phred quality score
type: Class
subclass of: assembly quality control datum
metadata section: Run QC
term as in existing standard: above 30 Qscore
term source: Output from MiSeq
example of usage: >75%
definition: An assembly quality control datum that describes the quality of the identification of nucleobases generated in sequencing, where the score is logarithimically related to the probability of an error in base calling.
definition source: URI: http://en.wikipedia.org/wiki/Phred_quality_score
in_subset: core slim.owl

assembly method
type: Class
equivalent class: Class
  union of: de-novo assembly
  union of: GENEPIO_0002028
subclass of: sequencing assembly datum
metadata section: Assembly QC
term as in existing standard: Assembly
term source: Standard Term
example of usage: the GROUP: MIxS term encompasses assembly method; estimated error rate; method of calculation
definition: Assembly method refers to how the reads were assembled into contigs for which either a de novo or mapping (reference based) strategy is used.
definition source: GROUP: MIxS
in_subset: core slim.owl

assembly status
type: Class
subclass of: assembly quality control datum
metadata section: Assembly QC
term as in existing standard: Assembly status
term source: from within "Finishing strategy" in GROUP: MIxS
example of usage: standard draft or finished
has curation status: IAO_0000428
definition: An assembly quality control datum that describes the status of the assembly which is categorised from draft to finished.
definition editor: Damion Dooley
definition source: CITATION: Chain, P.S., Grafham, D.V., Fulton, R.S., Fitzgerald, M.G., Hostetler, J., Muzny, D., Ali, J., Birren, B., Bruce, D.C., Buhay, C., et al. (2009). Genomics. Genome project standards in a new era of sequencing. Science 326, 236-237.
in_subset: core slim.owl
comment: "Attempting to convey the relative integrity and reliability of the data, six levels or terms have been proposed and applied to describe genome sequences." See subclass choices.

read coverage
type: Class
subclass of: assembly quality control datum
metadata section: Assembly QC
term as in existing standard: Coverage
term source: from within "Finishing strategy" in GROUP: MIxS
example of usage: 30
has curation status: IAO_0000428
definition: Coverage (read depth or depth) is the average number of reads representing a given nucleotide in the reconstructed sequence.
definition source: URI: http://en.wikipedia.org/wiki/Shotgun_sequencing
in_subset: core slim.owl
comment: Damion Dooley's note: Wikipedia defines calculation with: "the length of the original genome (G), the number of reads(N), and the average read length(L) as N * L/G"

contig count
type: Class
subclass of: assembly quality control datum
subclass of: STATO_0000047
subclass of: Restriction
  on property: is about
  some values from: SO_0001462
metadata section: Assembly QC
term as in existing standard: Number of Contigs
example of usage: 20
has curation status: http://purl.obolibrary.org/obo/IAO_0000428
definition: A contig count is the count of contigs that belong to a sequence assembly.
definition editor: Damion Dooley
in_subset: core slim.owl

assembly name (identifier)
type: Class
subclass of: sequencing assembly datum
subclass of: Restriction
  on property: is about
  some values from: SO_0000353
metadata section: Assembly QC
term as in existing standard: Assembly name
term source: Standard Term
example of usage: name and version of assemby
definition: Name/version of the assembly provided by the submitter that is used in the genome browsers and in the community
definition source: GROUP: MIxS
in_subset: core slim.owl

genome annotation algorithm
type: Class
subclass of: genomic sequencing annotation datum
metadata section: Assembly QC
term as in existing standard: Annotation Algorithm
term source: Standard Term
example of usage: Prokka
definition: Program used for annotation
definition source: GROUP: IRIDA Ontology (Emma)
in_subset: core slim.owl

genome annotation source
type: Class
subclass of: genomic sequencing annotation datum
metadata section: Assembly QC
term as in existing standard: Annotation Source
term source: Standard Term
example of usage: annotation source description
definition: For cases where annotation was provided by a community jamboree or model organism database rather than by a specific submitter
definition source: GROUP: MIxS
in_subset: core slim.owl

obsolete: NCBI BioSample data item
type: Class
definition editor: Damion Dooley
has obsolescence reason: IAO_0000227
term replaced by: GENEPIO_0001835
deprecated: true

GENEPIO_0000099
type: Class
subclass of: OBI_0001616
has_alternative_id: CDC ID

GENEPIO_0000101
type: Class
subclass of: strain identifier
definition editor: Damion Dooley

IRIDA case ID
type: Class
subclass of: case identifier
metadata section: ID Tracker
term as in existing standard: IRIDA ID
term source: ontology group
definition: An IRIDA case ID is a tracking identifier for a case used in the IRIDA.ca software system. It is used to cross-reference anonymized IDs.
definition editor: Damion Dooley
definition source: GROUP: IRIDA Ontology (Emma)

obsolete: NCBI BioProject data item
type: Class
definition: An NCBI BioProject data item is a datum within the NCBI BioProject standard collection
definition editor: Damion Dooley
has obsolescence reason: IAO_0000227
term replaced by: GENEPIO_0001836
deprecated: true

obsolete: INSDC MDM standard
type: Class
definition: The INDISC consortium "Minimum data for Matching" standard aims to define a format to capture reads and minimum metadata. It is developed by the "Repository and storage of sequence and meta-data" workgroup 2. It is used in the Global Microbial Identifier platform.
definition editor: Damion Dooley
term replaced by: the Global Microbial Identifier Minimum Data for Matching (MDM) Standard
deprecated: true

obsolete: MIxS data item
type: Class
definition: A MixS data item is a term or field defined in the Genomic Standards Consortium MIxS standard.
definition editor: Damion Dooley
term replaced by: Minimum Information about any (x) Sequence (MIxS)
deprecated: true

draft data standard
type: Class
subclass of: OBI_0000658
has curation status: IAO_0000428
definition: The 'draft data standard' class contains draft representations of formal or defacto third party standards and related components. These representations may have been crafted without any involvement of related standards issuers and so no guarantee can be provided about their currency, accuracy or veracity.
definition editor: Damion Dooley

obsolete: HIPPA PHI data item
type: Class
has obsolescence reason: IAO_0000103
term replaced by: American HIPPA Protected Health Information (PHI) guidelines
deprecated: true

obsolete: PulseNet data item
type: Class
has obsolescence reason: IAO_0000103
term replaced by: GENEPIO_0001839
deprecated: true

I2B2 Data Protection role standard
type: Class
subclass of: NCIT C103180
has curation status: IAO_0000428
definition: The I2B2 Workbench Data Protection role standard is a standard which names and lists data protection roles between a user and a given dataset that define the level of detail a user has access to.
definition editor: Damion Dooley
definition source: Derived from the Data Protection Track of the I2B2 Workbench software specification: https://www.i2b2.org/software/files/PDF/current/IM_Architecture.pdf

subject health status (GSCID-BRC)
type: Class
subclass of: organism datum
user interface feature: depth:1
user interface feature: order: NCIT:C115935 # healthy NCIT:C25610 # pathologic / diseased NCIT:C28554 # deceased
has curation status: IAO_0000428
definition: A description of whether a given subject organism appeared healthy, sick or deceased at the time of specimen extraction. If sick or deceased, additional details should be provided in project-specific fields.
definition editor: Damion Dooley
has_alternative_id: CS8

GSCID-BRC Core Sample standard
type: Class
subclass of: GSCID-BRC Project and Sample Application Standard
subclass of: Restriction
  on property: is about
  some values from: OBI_0100051
has curation status: IAO_0000428
definition: The GSCID-BRC Core Sample Standard is an extension of the GMI MDM data standard
definition editor: Damion Dooley
definition source: https://www.niaid.nih.gov/research/dmid-metadata-standards-core-sample

GSCID-BRC Core Project standard
type: Class
subclass of: GSCID-BRC Project and Sample Application Standard
has curation status: IAO_0000428
definition: A Core Project item is a field in the GSCID/BRC Project and Sample Application Core Project Standard.
definition editor: Damion Dooley
definition source: https://www.niaid.nih.gov/research/dmid-metadata-standards-core-project

specimen category
type: Class
subclass of: specimen datum
has curation status: IAO_0000428
definition: Specimen category is a categorical variable that broadly indicates the source of a specimen in order for data processing systems like NCBI's biosample submission portal to anticipate other fields related to the source. Currently this distinguishes between "clinical or host associated" specimens and "environmental/food or other pathogen" specimens.
definition editor: Damion Dooley

subject age - unit
type: Class
subclass of: organism datum
example of usage: day, week, month, year
has curation status: IAO_0000428
definition: Age unit of the age measurement of a subject (individual organism).
editor note: Damion Dooley Feb 20, 2017: GSCID-BRC calls for an explicit field here whereas NCBI Biosample and MIxS don't.
definition editor: Damion Dooley
definition source: NIAID GSCID-BRC metadata working group

NCBI standard
type: Class
subclass of: NCIT C103180
definition: The National Center for Biotechnology Information offers standards for submitting genomic project data to their BioProject and BioSample databases.
definition editor: Damion Dooley
alternative term: National Center for Biotechnology Information standard

specimen collection location - city or region
type: Class
subclass of: GENEPIO_0002162
subclass of: Restriction
has curation status: IAO_0000122
definition: A datum containing the city or region or more precise geographical location identifier for the site of a specimen collection event.
definition editor: Damion Dooley
definition source: Adapted from NIAID GSCID-BRC metadata working group
IAO_0000600: Note that this is expressed in a particular format in some standards.

Axiom
annotated source: specimen collection location - city or region
annotated property: subClassOf
annotated target: Restriction
user interface feature: lookup

specimen collection location - country
type: Class
subclass of: GENEPIO_0002162
subclass of: Restriction
  on property: specifies value of
  some values from: NCIT C25464
has curation status: IAO_0000122
definition: The country of the site of a given specimen collection event.
definition editor: Damion Dooley
definition source: NIAID GSCID-BRC metadata working group

Darwin Core Terms
type: Class
subclass of: NCIT C103180
has curation status: IAO_0000122
definition: The Darwin Core is body of standards. It includes a glossary of terms (in other contexts these might be called properties, elements, fields, columns, attributes, or concepts) intended to facilitate the sharing of information about biological diversity by providing reference definitions, examples, and commentaries.
definition editor: Damion Dooley
definition source: http://tdwg.github.io/dwc/terms/index.htm

travel history item
type: Class
subclass of: organism location history datum
has curation status: IAO_0000428
definition: A datetime measurement related to a person's travel with respect to potential epidemilogical implications.
definition editor: Damion Dooley

travel start date
type: Class
subclass of: travel history item
has curation status: IAO_0000428
definition: The date of a person's departure from their primary residence (at that time) on a journey to one or more other locations.
definition editor: Damion Dooley

travel end date
type: Class
subclass of: travel history item
subclass of: Restriction
  on property: after
  some values from: travel start date
has curation status: IAO_0000428
definition: The date of a person's return to some residence from a journey originating at that residence.
definition editor: Damion Dooley

infection aquired during travel
type: Class
subclass of: human exposure event - travel datum
has curation status: IAO_0000428
definition: Infection aquired during travel is a boolean datum indicating a diagnosis of a traveller's infection during a given trip.
definition editor: Damion Dooley

draft pathogenic epidemiology case investigation record
type: Class
subclass of: draft data standard
has curation status: IAO_0000428
definition: This is a model of the datums involved in an epidemiology investigation.
definition editor: Damion Dooley

draft pathogenic epi case exposure record
type: Class
subclass of: data specification
has curation status: IAO_0000428
definition: The draft epi case exposure model describes datums related to the possible transmission of a pathogen between a case person and other people, places, animals etc.
definition editor: Damion Dooley

draft pathogenic epi case food record
type: Class
subclass of: data specification
has curation status: IAO_0000428
definition: A description of a food item that a case patient has come in contact with.
definition editor: Damion Dooley

food brought back from travel
type: Class
subclass of: human exposure event - travel datum

epidemiology contact network model
type: Class
subclass of: contact specification
definition: An epidemiology contact network model is a definition of the information necessary to connect pathogen transmission patterns between individuals or animals in connection with an outbreak investigation.
definition editor: Damion Dooley

epi contact network model - human
type: Class
subclass of: epidemiology contact network model
has curation status: IAO_0000428
definition: An epi contact network - human is contact information about a person who may be involved in transmitting a pathogen.
definition editor: Damion Dooley

epi contact network model - animal
type: Class
subclass of: epidemiology contact network model
has curation status: IAO_0000428
definition: This is a model that provides location and transportation information about an animal that may be involved in transmitting a pathogen to a human or other animal.
definition editor: Damion Dooley

note
type: Class
subclass of: IAO_0000300
definition: A note is text that provides human-readable information on one or more subjects.
definition editor: Damion Dooley

draft pathogenic epi case general information record
type: Class
subclass of: data specification
has curation status: IAO_0000428
definition: An epi case general info model contains datum specifications about an epidemiology investigation case including the person involved, contact information and their demographics.
definition editor: Damion Dooley

draft pathogenic epi case isolate detail record
type: Class
subclass of: data specification
has curation status: IAO_0000428
definition: A record of the details around how, when, and from what an isolate was extracted.
definition editor: Damion Dooley

specimen source substance
type: Class
equivalent class: Class
  union of: environmental material
  union of: food specimen
  union of: GENEPIO_0002077
subclass of: material entity
subclass of: Restriction
  on property: located in
  some values from: GENEPIO_0002167
has curation status: IAO_0000428
definition: A specimen source substance is an organism substance or food product or environmental substance from which the specimen was extracted.
definition editor: Damion Dooley

isolate sequence filename
type: Class
subclass of: laboratory sequencing datum
has curation status: IAO_0000428
definition: An isolate sequence filename is the file name (http://edamontology.org/data_1050) of the contig assembly file created by a bioinformatics assembly process.
definition editor: Damion Dooley

cluster identifier
type: Class
subclass of: test specification
has curation status: IAO_0000428
definition: A cluster identifier is an identifier that locates a genomic variant of an organism within a community of past or present genetically related organisms.
definition editor: Damion Dooley

draft pathogenic epi case test record
type: Class
subclass of: data specification
has curation status: IAO_0000428
definition: A laboratory test performed on a specimen from a patient with regard to potential pathogenic disease.
definition editor: Damion Dooley

contact specification - lab test requester
type: Class
subclass of: contact specification - person
has curation status: IAO_0000428
definition: A lab test requestor is the individual or agency requesting that one or more tests be performed on a specimen.
definition editor: Damion Dooley

food cultural origin
type: Class
subclass of: food specimen datum
has curation status: IAO_0000428
definition: A food cultural origin datum indicates the cultural origin of a food product.
definition editor: Damion Dooley

draft pathogenic epi case travel record
type: Class
subclass of: data specification
has curation status: IAO_0000123
definition: A record of a patient's recent travel - departure and return, mode of travel and locations visited - as it may pertain to an outbreak pathogen transmission event.
definition editor: Damion Dooley

Region (England) (entry subject to GAZ replacement)
type: Class
subclass of: subnational region

contact specification - epi network contact
type: Class
subclass of: contact specification - person
has curation status: IAO_0000428
definition: An epi network contact is a person who may have recieved or transmitted an infectious disease related to an outbreak investigation.
definition editor: Damion Dooley

public health lab epidemiology contextual data standard
type: Class
subclass of: public health data standard
has curation status: IAO_0000428
definition: This model contains data type specifications for whole genome sequencing and epidemiology investigation contextual data.
definition editor: Damion Dooley

draft whole genome sequencing lab test record
type: Class
subclass of: draft data standard
definition: This is a set of datums involved in laboratory processing of whole-genome-sequenced isolates.
definition editor: Damion Dooley

draft WGS lab bioinformatics process record
type: Class
subclass of: data specification
has curation status: IAO_0000123
definition: A data specification which records the bioinformatics process of a draft whole genome sequencing product.
definition editor: Damion Dooley

draft WGS lab sequencing record
type: Class
subclass of: data specification
has curation status: IAO_0000123
definition: A data specification which records the sequencing datum of a draft whole genome sequencing product.
definition editor: Damion Dooley

NCBI SRA meta information standard
type: Class
subclass of: NCBI standard
has curation status: IAO_0000428
definition: An NCBI SRA meta information item is a field specification for a NCBI Sequence Read Archive record.
definition editor: Damion Dooley

isolate raw read filename
type: Class
subclass of: laboratory sequencing datum
definition: An isolate raw read filename is the file name (http://edamontology.org/data_1050) of the raw read file created by a genomic sequencing assay.

library preparation kit version
type: Class
subclass of: laboratory sequencing datum
metadata section: Sequencing
has curation status: IAO_0000428
definition: The version identifier of a packaged kit tailored for specific sequencing workflows.
definition editor: Damion Dooley

read trimming and filtering software
type: Class
subclass of: laboratory sequencing datum
has curation status: IAO_0000428
definition: The name and version of software used in a bioinformatics workflow to improve the quality of sequencing reads.
definition editor: Damion Dooley

bioinformatics pipeline name
type: Class
subclass of: laboratory sequencing datum
has curation status: IAO_0000428
definition: A laboratory sequencing datum which describes the name of the bioinformatics pipeline used.
definition editor: Damion Dooley

bioinformatics pipeline version
type: Class
subclass of: laboratory sequencing datum
has curation status: IAO_0000428
definition: A laboratory sequencing datum which describes the version of the bioinformatics pipeline used.
definition editor: Damion Dooley

bioinformatics pipeline protocol
type: Class
subclass of: laboratory sequencing datum
has curation status: IAO_0000428
definition: A laboratory sequencing datum which describes the protocol for the bioinformatics pipeline.
definition editor: Damion Dooley

draft WGS lab sequencing quality metrics record
type: Class
subclass of: data specification
has curation status: IAO_0000123
definition: A data specification which records the sequencing quality datum of a draft whole genome sequencing product.
definition editor: Damion Dooley

draft WGS lab assembly quality metrics record
type: Class
subclass of: data specification
has curation status: IAO_0000123
definition: A data specification which records the assembly quality datum of a draft whole genome sequencing product.
definition editor: Damion Dooley

project data type
type: Class
subclass of: IAO_0000104
has curation status: IAO_0000122
definition: A general label indicating the primary study goal. These are only relevant for Primary submission projects (not Umbrella projects).
definition editor: Damion Dooley
comment: Damion Dooley's note: According to http://trace.ddbj.nig.ac.jp/news/2014-11-12_e.html, "A BioProject record can have multiple project data types"

assembly project
type: Class
subclass of: project data type
has curation status: IAO_0000122
definition: Genome assembly project utilizing already existing sequence data including data that was submitted by a different group
definition editor: Damion Dooley
definition source: https://www.ncbi.nlm.nih.gov/books/NBK54364/

clone ends project
type: Class
subclass of: project data type
has curation status: IAO_0000122
definition: A sequencing project involving clone-ends
definition editor: Damion Dooley
definition source: https://www.ncbi.nlm.nih.gov/books/NBK54364/

epigenomics project
type: Class
subclass of: project data type
has curation status: IAO_0000122
definition: A sequencing project involving DNA methylation, histone modification, and/or chromatin accessibility datasets
definition editor: Damion Dooley
definition source: https://www.ncbi.nlm.nih.gov/books/NBK54364/

exome resequencing project
type: Class
subclass of: project data type
has curation status: IAO_0000122
definition: Exome resequencing project
definition editor: Damion Dooley
definition source: https://www.ncbi.nlm.nih.gov/books/NBK54364/

genome sequencing project
type: Class
subclass of: project data type
has curation status: IAO_0000122
definition: A whole, or partial, genome sequencing project (with or without a genome assembly)
definition editor: Damion Dooley
definition source: https://www.ncbi.nlm.nih.gov/books/NBK54364/

draft ReSeq Tuberculosis data platform standard
type: Class
subclass of: draft data standard
definition: The Relational Sequencing TB Data Platform (ReSeqTB) catalogs a vast amount of genotypic, phenotypic and related metadata from Mycobacterium tuberculosis (Mtb) strains to enable the development of clinically useful, WHO-endorsed in vitro diagnostic assays for rapid drug susceptibility testing of Mtb.
definition editor: Damion Dooley
definition source: https://platform.reseqtb.org/

test threshold measurement comparator
type: Class
subclass of: GENEPIO_0002036
example of usage: In expressions like: "<= 8mg/L"
has curation status: IAO_0000123
definition: The measurement comparator is a sign indicating that a measurement is above, equal to, or below a given threshold.
definition editor: Damion Dooley

less than
type: Class
subclass of: test threshold measurement comparator
user interface label: <
has curation status: IAO_0000428
definition: The "less than" comparator indicates that a given substance was present at less than a given quantity or concentration.
definition editor: Damion Dooley
has_alternative_id: <

less than or equal to
type: Class
subclass of: test threshold measurement comparator
user interface label: <=
has curation status: IAO_0000428
definition: The "less than or equal to" comparator indicates that a given substance was present at less than or equal to a given quantity or concentration.
definition editor: Damion Dooley
has_alternative_id: <=

equal to
type: Class
subclass of: test threshold measurement comparator
user interface label: ==
has curation status: IAO_0000428
definition: The "equal to" comparator indicates that a given substance was present at the given quantity or concentration.
definition editor: Damion Dooley
has_alternative_id: ==

greater than or equal to
type: Class
subclass of: test threshold measurement comparator
user interface label: >=
has curation status: IAO_0000428
definition: The "greater than or equal to" comparator indicates that a given substance was present at greater than or equal to a given quantity or concentration.
definition editor: Damion Dooley
has_alternative_id: >=

greater than
type: Class
subclass of: test threshold measurement comparator
user interface label: >
has curation status: IAO_0000428
definition: The "greater than" comparator indicates that a given substance was present at greater than a given quantity or concentration.
definition editor: Damion Dooley
has_alternative_id: >

NCBI Antibiogram standard
type: Class
subclass of: NCBI standard
user interface feature: order: OBI:0001616 # specimen identifier OBI:0001614 # GenBank ID GENEPIO:0001100 # antibiogram drug test model GENEPIO:0002062 # amr testing reference standard GENEPIO:0002045 # amr resistance testing method GENEPIO:0002047 # ... version or reagent GENEPIO:0002049 # amr testing platform GENEPIO:0002056 # ... vendor
has curation status: IAO_0000428
definition: The NCBI antibiogram standard details the reporting specifications for antimicrobial susceptibility and resistance data derived from drug resistant pathogens. This information is submitted as an antibiogram table on BioSample records.
definition editor: Damion Dooley

obsolete: NCBI isolate AMR testing model
type: Class
term replaced by: NCBI Antibiogram standard
deprecated: true

obsolete: restaurant
type: Class
definition: A restaurant or an eatery, is a business which prepares and serves food and drinks to customers in exchange for money.
definition editor: Damion Dooley
definition source: https://en.wikipedia.org/wiki/Restaurant
term replaced by: restaurant
deprecated: true

Canadian Integrated Public Health Information System (iPHIS) Standard
type: Class
subclass of: public health data standard
user interface label: iPHIS standard
has curation status: IAO_0000428
definition: The Canadian Integrated Public Health Information System (iPHIS) System provides a standard for holding reportable disease cases from participating jurisdictions.
definition editor: Damion Dooley

MIRU24 - international standard
type: Class
subclass of: test specification
example of usage: 254532233433235152213423
has curation status: IAO_0000428
definition: The MIRU24 - international standard is a mycobacterial interspersed repetitive units (MIRU) typing method that classifies Mycobacterium tuberculosis complex (MBTC) bacteria according to a multiple locus VNTR [variable number of tandem repeats] analysis (MLVA) typing scheme of counts of repeats at 24 sequence loci.
IAO_0000600: The ordering of loci is as follows: MIRU 04, MIRU 26, MIRU 40, MIRU 10, MIRU 16, MIRU 31, 424 577, 2165, 401, 3690, 4156, 2163, 1955, 4052, MIRU 02, MIRU 23, MIRU 39, MIRU 20, MIRU 24, MIRU 27, 2347, 2461, 3171

MIRU24 - Canadian standard
type: Class
subclass of: test specification
has curation status: IAO_0000428
definition: The MIRU24 - Canadian standard is a Mycobacterium tuberculosis typing method exactly like MIRU24 - international standard except that the report of the ordering of the matching loci is different.
definition editor: Damion Dooley
IAO_0000600: The ordering of loci is as follows: MIRU 02, MIRU 04, MIRU 10, MIRU 16, MIRU 20, MIRU 23, MIRU 24, MIRU 26, MIRU 27, MIRU 31, MIRU 39, MIRU 40, 424, 577, 1955, 2163, 2165, 2347, 2401, 2461, 3171, 3690, 4052, 4156

spray-wading water
type: Class
subclass of: treated water - ambient temperature

pool water
type: Class
subclass of: treated water - ambient temperature

obsolete: hot tub
type: Class
term replaced by: hot tub
deprecated: true

obsolete: cafeteria
type: Class
definition: A cafeteria is a type of food service location in which there is little or no waiting staff table service, whether a restaurant or within an institution such as a large office building or school.
definition editor: Damion Dooley
definition source: https://en.wikipedia.org/wiki/Cafeteria
term replaced by: cafeteria
deprecated: true

obsolete: bakery
type: Class
term replaced by: bakery
deprecated: true

obsolete: delicatessen
type: Class
definition: A delicatessen or deli is a retail establishment that sells a selection of unusual or foreign prepared foods.
definition editor: Damion Dooley
definition source: https://en.wikipedia.org/wiki/Delicatessen
term replaced by: delicatessen
deprecated: true

obsolete: food kiosk
type: Class
definition: A food kiosk is a kiosk (a booth with an open window on one side) that sells food.
definition editor: Damion Dooley
term replaced by: food kiosk
deprecated: true

obsolete: grocery store
type: Class
definition: A grocery store is a retail store that primarily sells food.
definition editor: Damion Dooley
term replaced by: grocery store
deprecated: true

obsolete: specialty/ethnic store
type: Class
definition: A specialty/ethnic food store is a store specializing in a particular variety of food or food of cultural / regional origin.
definition editor: Damion Dooley
term replaced by: ethnic food shop
deprecated: true

obsolete: market
type: Class
definition: A market, or marketplace, is a location where people regularly gather for the purchase and sale of provisions, livestock, and other goods
definition editor: Damion Dooley
term replaced by: market
deprecated: true

treatment history datum
type: Class
subclass of: IAO_0000416
has curation status: IAO_0000428
definition: A time measurement datum that pertains to a patient's medical treatment.
definition editor: Damion Dooley

obsolete: take out restaurant
type: Class
definition: A restaurant providing prepared meals or other food items that the purchaser intends to eat elsewhere
definition editor: Damion Dooley
definition source: https://en.wikipedia.org/wiki/Take-out
term replaced by: take-out restaurant
deprecated: true

treatment start date
type: Class
subclass of: treatment history datum
has curation status: IAO_0000428
definition: A treatment start date is a date/time datum which indicates the start of a particular medical treatment for a patient.
definition editor: Damion Dooley

canoeing / kayaking / boating
type: Class
subclass of: human water activity

hiking
type: Class
subclass of: human general activity

camping
type: Class
subclass of: human general activity

obsolete: social gathering
type: Class
definition editor: Damion Dooley
term replaced by: http://purl.obolibrary.org/obo/PCO_0000033
deprecated: true

obsolete: party
type: Class
term replaced by: http://purl.obolibrary.org/obo/PCO_0000035
deprecated: true

obsolete: wedding
type: Class
term replaced by: http://purl.obolibrary.org/obo/PCO_0000038
deprecated: true

obsolete: baby shower
type: Class
term replaced by: http://purl.obolibrary.org/obo/PCO_0000039
deprecated: true

obsolete: potluck
type: Class
term replaced by: http://purl.obolibrary.org/obo/PCO_0000037
deprecated: true

obsolete: community event
type: Class
term replaced by: http://purl.obolibrary.org/obo/PCO_0000034
deprecated: true

obsolete: long term care facility
type: Class
definition: A long term care facility provides a type of residential care. It is a place of residence for people who require continual nursing care and have significant difficulty coping with the required activities of daily living.
definition editor: Damion Dooley
definition source: https://en.wikipedia.org/wiki/Nursing_home_care
term replaced by: nursing home
deprecated: true

treatment end date
type: Class
subclass of: treatment history datum
subclass of: Restriction
  on property: after
  some values from: treatment start date
has curation status: IAO_0000428
definition: A treatment end date is a date/time datum which indicates the end of a particular medical treatment for a patient.
definition editor: Damion Dooley

food related exposure event
type: Class
subclass of: infectious disease exposure event
definition editor: Damion Dooley

infection-specific food detail
type: Class
subclass of: food specimen detail
has curation status: IAO_0000428
definition: Some bacteria are associated with particular foods. Need relationship
definition editor: Damion Dooley

tuberculosis treatment drug
type: Class
subclass of: polyatomic entity
has curation status: IAO_0000428
definition: A tuberculosis treatment antibiotic is an antibiotic used in the treatment of tuberculosis.
definition editor: Damion Dooley
see also: “Treatment of Tuberculosis Guidelines”, WHO, Geneva, 2010, 30 www.who.int/tb/ - See more at: http://www.tbfacts.org/tb-drugs/#sthash.nibuzCLV.dpuf

vegetarian
type: Class
subclass of: dietary restriction

organism location history datum
type: Class
subclass of: IAO_0000416
has curation status: IAO_0000428
definition: A time measurement datum that pertains to an organism's physical location.
definition editor: Damion Dooley

food avoidance
type: Class
subclass of: dietary restriction
comment: This will take on a sub-herarchy of food types.

special diet
type: Class
subclass of: dietary restriction

water related exposure event
type: Class
subclass of: infectious disease exposure event

municipal water
type: Class
subclass of: treated water - ambient temperature

immigration year of arrival
type: Class
subclass of: organism location history datum
has curation status: IAO_0000428
definition: A time measurement datum indicating the year a person immigrated to a given country.
definition editor: Damion Dooley

bottled water
type: Class
subclass of: treated water - ambient temperature

infectious disease exposure event
type: Class
subclass of: process
has curation status: IAO_0000428
definition: An event where one or more hosts are exposed to an infectious pathogen
definition editor: Damion Dooley

human related exposure event
type: Class
subclass of: infectious disease exposure event
definition editor: Damion Dooley

animal related exposure event
type: Class
subclass of: infectious disease exposure event
definition editor: Damion Dooley

NCBI BioSample isolate (human name or description)
type: Class
subclass of: IAO_0000300
has curation status: IAO_0000428
definition: Identification or description of the specific individual from which this sample was obtained
definition editor: Damion Dooley
definition source: https://www.ncbi.nlm.nih.gov/biosample/docs/attributes/

obsolete: petting zoo
type: Class
definition editor: Damion Dooley
term replaced by: petting zoo
deprecated: true

agricultural fair
type: Class
subclass of: PCO_0000033
definition editor: Damion Dooley

isolate passage history datum
type: Class
subclass of: laboratory sequencing datum
definition: An isolate passage history is a record of the cyclic growth process that led to it, including number of times its was put through the process, and the method used.
definition editor: Damion Dooley
definition source: http://purl.obolibrary.org/obo/GENEPIO_0001835

NCBI pathotype
type: Class
subclass of: IAO_0000300
example of usage: For Eschericia coli: STEC, UPEC
definition: A pathotype is a common name for a group of organisms (of the same species) that have the same pathogenicity on a specified host
definition source: https://en.wiktionary.org/wiki/pathotype

obsolete: pet treat
type: Class
definition editor: Damion Dooley
has obsolescence reason: Duplicate term, replaced by more appropriate FOODON term FOODON:00003357 'pet treat'.
term replaced by: pet treat
deprecated: true

obsolete: pet food (raw)
type: Class
definition editor: Damion Dooley
has obsolescence reason: Duplicate term, replaced by more appropriate FOODON term, FOODON:00003356
term replaced by: pet food (raw)
deprecated: true

human exposure event - travel datum
type: Class
subclass of: organism datum
has curation status: IAO_0000428
definition: An epidemiology travel datum is a datum regarding a particular human's travel trip destination, mode, and motivation, with respect to an epidemiology investigation.
definition editor: Damion Dooley

boat / cruise travel
type: Class
subclass of: travel mode

train travel
type: Class
subclass of: travel mode

bus travel
type: Class
subclass of: travel mode

car travel
type: Class
subclass of: travel mode

airline travel
type: Class
subclass of: travel mode

travel mode
type: Class
subclass of: human exposure event - travel datum
has curation status: IAO_0000428
definition: A travel mode is a type of transportation which a given human has used while travelling on a particular trip.
definition editor: Damion Dooley

travel reason
type: Class
subclass of: human exposure event - travel datum
has curation status: IAO_0000428
definition: A travel reason is a motivation for traveling on a particular trip expressed by the traveller.
definition editor: Damion Dooley

travel for pleasure
type: Class
subclass of: travel reason

business activity
type: Class
subclass of: travel reason

religious missionairy activity
type: Class
subclass of: travel reason

rural backpacking activity
type: Class
subclass of: travel for pleasure

visiting relative/friends
type: Class
subclass of: travel for pleasure

travel tour
type: Class
subclass of: travel for pleasure

unsure of travel reason
type: Class
subclass of: travel reason

draft tuberculosis - specimen contextual data standard
type: Class
subclass of: draft data standard
definition: The tuberculosis draft standard is a GenEpiO set of draft genomic and clinical data items related to Mycobacterium tuberculosis that various agencies are using in their own reporting.

behavioural risk factor
type: Class
subclass of: IAO_0000027
has curation status: IAO_0000123
definition editor: Damion Dooley

obsolete: E. coli serotype part
type: Class
term replaced by: E. coli serotype specification
deprecated: true

O antigen
type: Class
subclass of: OBI_1110034
database_cross_reference: Snomed: Concept 260827009

H antigen
type: Class
subclass of: OBI_1110034
database_cross_reference: Snomed: Concept 260823008

homeless status
type: Class
subclass of: behavioural risk factor
has curation status: IAO_0000123
definition editor: Damion Dooley

serovar/serotype common name
type: Class
subclass of: test specification
has curation status: IAO_0000122
definition: A serotype or serovar is a distinct variation within a species of bacteria or virus or among immune cells of different individuals. These microorganisms, viruses, or cells are classified together based on their cell surface antigens, allowing the epidemiologic classification of organisms to the sub-species level
definition editor: Damion Dooley
definition source: https://en.wikipedia.org/wiki/Serotype

Salmonella serovar
type: Class
subclass of: OMP_0000207
subclass of: Restriction
  on property: is about
  some values from: NCBITaxon 590

Salmonella serovar name
type: Class
subclass of: serovar/serotype common name

Salmonella antigenic formula
type: Class
subclass of: antigenic formula
subclass of: Restriction
  on property: is about
  some values from: NCBITaxon 590

drug use status
type: Class
subclass of: behavioural risk factor
has curation status: IAO_0000123
definition editor: Damion Dooley

incarceration status
type: Class
subclass of: behavioural risk factor
has curation status: IAO_0000123
definition editor: Damion Dooley

HIV status
type: Class
subclass of: behavioural risk factor
has curation status: IAO_0000123
definition editor: Damion Dooley

HIV risk status
type: Class
subclass of: behavioural risk factor
has curation status: IAO_0000123
definition editor: Damion Dooley

A.I.D.S status
type: Class
subclass of: behavioural risk factor
has curation status: IAO_0000123
definition editor: Damion Dooley

drug abuse status
type: Class
subclass of: behavioural risk factor
has curation status: IAO_0000123
definition editor: Damion Dooley

injection drug use status
type: Class
subclass of: behavioural risk factor
has curation status: IAO_0000123
definition editor: Damion Dooley

recreational drug use status
type: Class
subclass of: behavioural risk factor
has curation status: IAO_0000123
definition editor: Damion Dooley

methadone use status
type: Class
subclass of: behavioural risk factor
has curation status: IAO_0000123
definition editor: Damion Dooley

substantial alcohol use/abuse status
type: Class
subclass of: behavioural risk factor
has curation status: IAO_0000123
definition editor: Damion Dooley

smoking status
type: Class
subclass of: behavioural risk factor
has curation status: IAO_0000123
definition editor: Damion Dooley

country of birth
type: Class
subclass of: organism datum
subclass of: Restriction
  on property: contains process
  some values from: NCIT C25155
subclass of: Restriction
  on property: is about
  some values from: NCIT C25464
has curation status: IAO_0000428
definition: A country of birth is the country that a given person (or animal) was born in.
definition editor: Damion Dooley

sequence number
type: Class
subclass of: laboratory sequencing datum
example of usage: Tb_1 (with respect to an Illumina SampleSheet.csv spreadsheet) 13 (with respect to a ReSeqTB SNP pipeline sample report)
has curation status: IAO_0000428
definition: A sequence number is a numeric identifier of a sequence with respect to a particular data table or dataset.

date last seen alive
type: Class
subclass of: lifespan history item
has curation status: IAO_0000428
definition editor: Damion Dooley
definition editor: The 'date last seen alive' is the date that a subject (patient) was last known (seen, heard, messaged) to be alive.

second line or reserve tuberculosis drug
type: Class
subclass of: tuberculosis treatment drug

tuberculosis infection anatomical site
type: Class
subclass of: UBERON_0001062

obsolete: NCBI Antibiogram model
type: Class
term replaced by: NCBI Antibiogram standard
deprecated: true

draft antibiogram drug test model
type: Class
subclass of: draft data standard
user interface feature: order: GENEPIO:0001187 # antimicrobial resistance test drug GENEPIO:0002112 # drug MIC GENEPIO:0002080 # drug minimum inhibitory concentration unit GENEPIO:0001001 # measurement comparator NCIT:C85539 # antimicrobial resistance phenotype GENEPIO:0002181 # antimicrobial resistance phenotype - ECOFF
has curation status: IAO_0000428
definition: This is the minimal set of parameters for drug test results for a particular antimicrobial agent.
definition editor: Damion Dooley

predicted exposure start
type: Class
subclass of: exposure history item
definition: A date-time datum that marks the predicted start of possible human or animal exposure to a pathogen agent, directly or indirectly, based on a suspected pathogen and first symptom date-time.
definition editor: Damion Dooley

predicted exposure end
type: Class
subclass of: exposure history item
definition: A date-time datum that marks the predicted end of possible human or animal exposure to a pathogen agent, directly or indirectly, based on a suspected pathogen and first symptom date-time.
definition editor: Damion Dooley

map project
type: Class
subclass of: project data type
has curation status: IAO_0000122
definition: Map: - project that results in non-sequence map data such as genetic map, radiation hybrid map, cytogenetic map, optical map, and etc.
definition editor: Damion Dooley
definition source: https://www.ncbi.nlm.nih.gov/books/NBK54364/

metagenome project
type: Class
subclass of: project data type
has curation status: IAO_0000122
definition: Metagenome: sequence analysis of environmental samples
definition editor: Damion Dooley
definition source: https://www.ncbi.nlm.nih.gov/books/NBK54364/

metagenome assembly project
type: Class
subclass of: project data type
has curation status: IAO_0000122
definition: Metagenome assembly: a genome assembly generated from sequenced environmental samples
definition editor: Damion Dooley
definition source: https://www.ncbi.nlm.nih.gov/books/NBK54364/

other project data type
type: Class
subclass of: project data type
has curation status: IAO_0000122
definition: Other: a free text description is provided to indicate Other data type
definition editor: Damion Dooley
definition source: https://www.ncbi.nlm.nih.gov/books/NBK54364/

phenotype or genotype project
type: Class
subclass of: project data type
has curation status: IAO_0000122
definition: Phenotype or Genotype: project correlating phenotype and genotype
definition editor: Damion Dooley
definition source: https://www.ncbi.nlm.nih.gov/books/NBK54364/

proteome project
type: Class
subclass of: project data type
has curation status: IAO_0000122
definition: Proteome: large scale proteomics experiment including mass spec. analysis
definition editor: Damion Dooley
definition source: https://www.ncbi.nlm.nih.gov/books/NBK54364/

random survey project
type: Class
subclass of: project data type
has curation status: IAO_0000122
definition: Random Survey: sequence generated from a random sampling of the collected sample; not intended to be comprehensive sampling of the material.
definition editor: Damion Dooley
definition source: https://www.ncbi.nlm.nih.gov/books/NBK54364/

targeted locus (loci) project
type: Class
subclass of: project data type
has curation status: IAO_0000122
definition: Targeted locus (loci): project to sequence specific loci, such as a 16S rRNA sequencing
definition editor: Damion Dooley
definition source: https://www.ncbi.nlm.nih.gov/books/NBK54364/

transcriptome or gene expression
type: Class
subclass of: project data type
has curation status: IAO_0000122
definition: Transcriptome or Gene expression: large scale RNA sequencing or expression analysis. Includes cDNA, EST, RNA_seq, and microarray.
definition editor: Damion Dooley
definition source: https://www.ncbi.nlm.nih.gov/books/NBK54364/

variation project
type: Class
subclass of: project data type
has curation status: IAO_0000122
definition: A sequencing project with a primary goal of identifying large or small sequence variation across populations.
definition editor: Damion Dooley
definition source: https://www.ncbi.nlm.nih.gov/books/NBK54364/

INSDC country qualifier
type: Class
subclass of: INSDC standard
subclass of: GENEPIO_0002468
subclass of: Restriction
  on property: specifies value of
  some values from: NCIT C25464
subclass of: Restriction
  on property: has specified value
  all values from: Datatype
    on datatype: string
    with restrictions:
      pattern: (Afghanistan|Albania|Algeria|American Samoa|Andorra|Angola|Anguilla|Antarctica|Antigua and Barbuda|Arctic Ocean|Argentina|Armenia|Aruba|Ashmore and Cartier Islands|Atlantic Ocean|Australia|Austria|Azerbaijan|Bahamas|Bahrain|Baltic Sea|Baker Island|Bangladesh|Barbados|Bassas da India|Belarus|Belgium|Belize|Benin|Bermuda|Bhutan|Bolivia|Borneo|Bosnia and Herzegovina|Botswana|Bouvet Island|Brazil|British Virgin Islands|Brunei|Bulgaria|Burkina Faso|Burundi|Cambodia|Cameroon|Canada|Cape Verde|Cayman Islands|Central African Republic|Chad|Chile|China|Christmas Island|Clipperton Island|Cocos Islands|Colombia|Comoros|Cook Islands|Coral Sea Islands|Costa Rica|Cote d'Ivoire|Croatia|Cuba|Curacao|Cyprus|Czech Republic|Democratic Republic of the Congo|Denmark|Djibouti|Dominica|Dominican Republic|East Timor|Ecuador|Egypt|El Salvador|Equatorial Guinea|Eritrea|Estonia|Ethiopia|Europa Island|Falkland Islands (Islas Malvinas)|Faroe Islands|Fiji|Finland|France|French Guiana|French Polynesia|French Southern and Antarctic Lands|Gabon|Gambia|Gaza Strip|Georgia|Germany|Ghana|Gibraltar|Glorioso Islands|Greece|Greenland|Grenada|Guadeloupe|Guam|Guatemala|Guernsey|Guinea|Guinea-Bissau|Guyana|Haiti|Heard Island and McDonald Islands|Honduras|Hong Kong|Howland Island|Hungary|Iceland|India|Indian Ocean|Indonesia|Iran|Iraq|Ireland|Isle of Man|Israel|Italy|Jamaica|Jan Mayen|Japan|Jarvis Island|Jersey|Johnston Atoll|Jordan|Juan de Nova Island|Kazakhstan|Kenya|Kerguelen Archipelago|Kingman Reef|Kiribati|Kosovo|Kuwait|Kyrgyzstan|Laos|Latvia|Lebanon|Lesotho|Liberia|Libya|Liechtenstein|Line Islands|Lithuania|Luxembourg|Macau|Macedonia|Madagascar|Malawi|Malaysia|Maldives|Mali|Malta|Marshall Islands|Martinique|Mauritania|Mauritius|Mayotte|Mediterranean Sea|Mexico|Micronesia|Midway Islands|Moldova|Monaco|Mongolia|Montenegro|Montserrat|Morocco|Mozambique|Myanmar|Namibia|Nauru|Navassa Island|Nepal|Netherlands|New Caledonia|New Zealand|Nicaragua|Niger|Nigeria|Niue|Norfolk Island|North Korea|North Sea|Northern M…
user interface feature: help: Consult the http://www.insdc.org/country.html country list for valid options.
definition: The INSDC country qualifier is a textual controlled vocabulary used to indicate the country of origin of a DNA sample. It can also have the following format: country:sub_region, such as: "Canada:Vancouver".
definition editor: Damion Dooley

phenotype project objective
type: Class
subclass of: OBI_0001892
user interface label: phenotype
has curation status: IAO_0000122
definition: Phenotype: phenotypic measurements for submission to dbGaP
definition editor: Damion Dooley
definition source: https://www.ncbi.nlm.nih.gov/books/NBK54364/

genome material from specimen
type: Class
subclass of: OBI_0001882
subclass of: Restriction
  on property: is about
  some values from: SO_0001026
user interface label: genome material
has curation status: IAO_0000122
definition editor: Damion Dooley
definition source: https://www.ncbi.nlm.nih.gov/books/NBK54364/

TB lineage 7 - Ethiopia
type: Class
subclass of: GENEPIO_0002008

organs or organ parts
type: Class
subclass of: object aggregate
subclass of: Class
  intersection of: Restriction
    on property: has member
    some values from: Restriction
      on property: part of
      some values from: UBERON_0000062
  intersection of: Restriction
    on property: has member
    all values from: Restriction
      on property: part of
      some values from: UBERON_0000062
has curation status: IAO_0000122
definition: An object aggregate which has as members whole organs or parts of organs, possibly from different organisms.
definition editor: http://orcid.org/0000-0002-8844-9165
date: 2021-04-19T23:36:25Z

travel outside Canada
type: Class
subclass of: travel destination
definition: A travel destination which a given human has travelled to on a particular trip and is outside Canada.
definition editor: https://orcid.org/0000-0002-9578-0788
date: 2021-05-27T04:35:17Z

travel outside province/territory
type: Class
subclass of: travel destination
definition: A travel destination which a given human has travelled to on a particular trip and is outside a given province/territory of interest.
definition editor: https://orcid.org/0000-0002-9578-0788
date: 2021-05-27T04:36:13Z

CanCOGeN SARS-CoV-2 specification
type: Class
subclass of: GENEPIO_0100588
has curation status: requires discussion
definition: A data specification established for use by The Canadian COVID-19 Genomics Network (CanCOGeN) project for SARS-CoV-2 contextual data (metadata) harmonization and curation across data providers.
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:18:57Z
has exact synonym: The Canadian COVID-19 Genomics Network SARS-CoV-2 specification
has exact synonym: The Canadian COVID-19 Genomics Network severe acute respiratory syndrome coronavirus 2 specification
has exact synonym: The Canadian coronavirus 2019 Genomics Network severe acute respiratory syndrome coronavirus 2 specification

data field category
type: Class
subclass of: IAO_0000027
subclass of: Restriction
  on property: has member
  some values from: GENEPIO_0100586
example of usage: An instance of a "data field category" that contains the "bioproject accession field", "biosample accession field", and "GISAID accession field".
has curation status: IAO_0000428
definition: A data field category which receives a range of one or more data fields.
contributor: http://orcid.org/0000-0002-9578-0788
date: 2022-11-23T00:33:27.896Z

database identifiers field category
type: Class
subclass of: data field category
example of usage: An instance of the "database identifiers field category" that contains the "bioproject accession field".
has curation status: ready for release
definition: A data field category which refers to database identifier fields.
alternative term: database identifiers
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: database identifiers slot category

specimen collector sample ID field
type: Class
subclass of: GENEPIO_0100631
example of usage: prov_rona_99
has curation status: requires discussion
definition: An identifier data field which describes the user-defined name for the sample.
alternative term: sample collector sample identifier
alternative term: sample_collector_sample_ID
alternative term: specimen collector sample ID
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: sample collector sample identifier field
has exact synonym: sample collector sample identifier slot
has exact synonym: specimen collector sample ID slot
comment: Example Guidance: Every Sample ID from a single submitter must be unique. It can have any format, but we suggest that you make it concise, unique and consistent within your lab, and as informative as possible.

lifespan history item
type: Class
subclass of: IAO_0000416
has curation status: IAO_0000428
definition: A livespan history item is a date-associated event pertaining to the life of a subject.
definition editor: Damion Dooley

related specimen primary ID field
type: Class
subclass of: GENEPIO_0100631
example of usage: SR20-12345
has curation status: requires discussion
definition: A data field which describes the primary identifer of a related specimen previously submitted to the repository.
alternative term: related specimen primary ID
alternative term: related specimen primary identifier
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: related specimen primary ID slot
has exact synonym: related specimen primary identifier field
has exact synonym: related specimen primary identifier slot
comment: Example Guidance: Store the primary ID of the related specimen previously submitted to the National Microbiology Laboratory so that the samples can be linked and tracked through the system.

IRIDA sample name field
type: Class
subclass of: GENEPIO_0100631
example of usage: prov_rona_99
has curation status: requires discussion
definition: A data field which describes the identifer assigned to a sequenced isolate in Integrated Rapid Infectious Disease Analysis (IRIDA) bioinformatics platform.
alternative term: IRIDA sample identifier
alternative term: IRIDA sample name
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: IRIDA sample ID slot
has exact synonym: IRIDA sample identifier slot
has exact synonym: IRIDA sample name slot
has exact synonym: Integrated Rapid Infectious Disease Analysis sample ID field
has exact synonym: Integrated Rapid Infectious Disease Analysis sample ID slot
has exact synonym: Integrated Rapid Infectious Disease Analysis sample identifier field
has exact synonym: Integrated Rapid Infectious Disease Analysis sample identifier slot
has exact synonym: Integrated Rapid Infectious Disease Analysis sample name field
has exact synonym: Integrated Rapid Infectious Disease Analysis sample name slot
comment: Example Guidance: Store the IRIDA sample name. The IRIDA sample name will be created by the individual entering data into the IRIDA platform. IRIDA samples may be linked to metadata and sequence data, or just metadata alone. It is recommended that the IRIDA sample name be the same as, or contain, the specimen collector sample ID for better traceability. It is also recommended that the IRIDA sample name mirror the GISAID accession. IRIDA sample names cannot contain slashes. Slashes should be replaced by underscores. See IRIDA documentation for more information regarding special characters (https://irida.corefacility.ca/documentation/user/user/samples/#adding-a-new-sample).

umbrella bioproject accession field
type: Class
subclass of: GENEPIO_0100631
example of usage: PRJNA623807
has curation status: requires discussion
definition: An identifier data field which describes the International Nucleotide Sequence Database Collaboration (INSDC) umbrella accession number of the BioProject to which the BioSample belongs.
alternative term: umbrella bioproject accession
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: umbrella bioproject accession slot
comment: Example Guidance: Required if submission is linked to an umbrella BioProject. An umbrella BioProject links together related BioProjects. A valid BioProject umbrella accession has prefix PRJN, PRJE or PRJD. Your laboratory can have one or many BioProjects.

bioproject accession field
type: Class
subclass of: GENEPIO_0100631
example of usage: PRJNA12345
has curation status: requires discussion
definition: An identifier data field which describes the International Nucleotide Sequence Database Collaboration (INSDC) accession number of the BioProject(s) to which the BioSample belongs.
alternative term: bioproject accession
alternative term: bioproject_accession
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: bioproject accession slot
comment: Example Guidance: Required if submission is linked to a BioProject. BioProjects are an organizing tool that links together raw sequence data, assemblies, and their associated metadata. A valid BioProject accession has prefix PRJN, PRJE or PRJD, e.g., PRJNA12345 and is created once at the beginning of a new sequencing project. Your laboratory can have one or many BioProjects.

biosample accession field
type: Class
subclass of: GENEPIO_0100631
example of usage: SAMN14180202
has curation status: requires discussion
definition: A data field which describes the identifier assigned to a BioSample in International Nucleotide Sequence Database Collaboration (INSDC) archives.
alternative term: biosample accession
alternative term: biosample_accession
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: biosample accession slot
comment: Example Guidance: Store the accession returned from the BioSample submission. NCBI BioSamples will have the prefix SAMN, while ENA BioSamples will have the prefix SAMEA.

SRA accession field
type: Class
subclass of: GENEPIO_0100631
example of usage: SRR11177792
has curation status: requires discussion
definition: A data field which describes the Sequence Read Archive (SRA), European Nucleotide Archive (ENA) or DDBJ Sequence Read Archive (DRA) identifier linking raw read data, methodological metadata and quality control metrics submitted to the International Nucleotide Sequence Database Collaboration (INSDC).
alternative term: SRA accession
alternative term: SRA_accession
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: SRA accession slot
has exact synonym: Sequence Read Archive accession field
has exact synonym: Sequence Read Archive accession slot
comment: DDBJ = DNA DataBank of Japan Example Guidance: Store the accession assigned to the submitted .run.. NCBI-SRA accessions start with SRR, EBI-ENA runs start with ERR and DRA accessions start with DRR.

GenBank accession field
type: Class
subclass of: GENEPIO_0100631
example of usage: MN908947.3
has curation status: requires discussion
definition: A data field which describes the GenBank/ENA/DDBJ identifier assigned to the sequence in the International Nucleotide Sequence Database Collaboration (INSDC) archives.
alternative term: GenBank accession
alternative term: GenBank/ENA/DDBJ accession
alternative term: GenBank_accession
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: GenBank accession slot
has exact synonym: GenBank/ENA/DDBJ accession field
has exact synonym: GenBank/ENA/DDBJ accession slot
has exact synonym: National Genetic Sequence Data Base accession field
has exact synonym: National Genetic Sequence Data Base accession slot
comment: GenBank = National Genetic Sequence Data Base; ENA = European Nucleotide Archive; DDBJ = DNA DataBank of Japan Example Guidance: Store the accession returned from a GenBank/ENA/DDBJ submission (viral genome assembly).

GISAID accession field
type: Class
subclass of: GENEPIO_0100631
example of usage: EPI_ISL_123456
has curation status: requires discussion
definition: An identifier data field which describes the Global Initiative on Sharing Avian Influenza Data (GISAID) accession number assigned to the sequence.
alternative term: GISAID accession
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: GISAID accession slot
has exact synonym: Global Initiative on Sharing Avian Influenza Data accession field
has exact synonym: Global Initiative on Sharing Avian Influenza Data accession slot
comment: Example Guidance: Store the accession returned from the GISAID submission.

third party lab sample ID field
type: Class
subclass of: GENEPIO_0100631
example of usage: SHK123456
has curation status: requires discussion
definition: A data field which describes the identifier assigned to a sample by a third party service provider.
alternative term: third party lab sample ID
alternative term: third party lab sample identifier
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: third party lab sample ID slot
has exact synonym: third party lab sample identifier field
has exact synonym: third party lab sample identifier slot
comment: Example Guidance: Store the sample identifier supplied by the third party services provider.

sample collection and processing field category
type: Class
subclass of: data field category
example of usage: An instance of the "sample collection and processing field category" that contains the "sample collection date field".
has curation status: ready for release
definition: A data field category which refers to sample collection and processing information fields.
alternative term: sample collection and processing
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: sample collection and processing slot category

untreated water
type: Class
subclass of: water exposure by source

sample collected by field
type: Class
subclass of: GENEPIO_0100586
example of usage: Public Health Agency of Canada
has curation status: requires discussion
definition: A data field which describes the name of the organization with which the sample collector is affiliated.
alternative term: sample collected by
alternative term: sample_collected_by
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: sample collected by slot
comment: Example Guidance: The name of the agency should be written out in full, (with minor exceptions) and be consistent across multiple submissions.

treated water - ambient temperature
type: Class
subclass of: water exposure by source

sample collector contact email field
type: Class
subclass of: GENEPIO_0100586
has curation status: requires discussion
definition: A data field which describes the email address of the contact responsible for follow-up regarding the sample.
alternative term: sample collector contact email
alternative term: sample_collector_contact_email
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: sample collector contact email slot
comment: Example Guidance: The email address can represent a specific individual or laboratory.

sample collector contact address field
type: Class
subclass of: GENEPIO_0100586
example of usage: 655 Lab St, Vancouver, British Columbia, V5N 2A2, Canada
has curation status: requires discussion
definition: A data field which describes the mailing address of the agency submitting the sample.
alternative term: sample collector contact address
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: sample collector contact address slot
comment: Example Guidance: The mailing address should be in the format: Street number and name, City, State/Province/Region, Country, Postal Code/Zip Code

sequence submitted by field
type: Class
subclass of: GENEPIO_0100586
example of usage: Centers for Disease Control and Prevention
has curation status: requires discussion
definition: A data field which describes the name of the agency that submitted the sequence to a database.
editor note: Not to be confused with 'sequenced by' http://purl.obolibrary.org/obo/GENEPIO_0100416
alternative term: sequence submitted by
alternative term: sequence_submitted_by
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: sequence submitted by slot
comment: Example Guidance: The name of the agency should be written out in full, (with minor exceptions) and be consistent across multiple submissions.

epidemiology investigation data item
type: Class
subclass of: awaiting ontology review

obsolete distribution event
type: Class
has obsolescence reason: Unclear semantics and origin
deprecated: true

obsolete supply point / event
type: Class
deprecated: true

sequence submitter contact email field
type: Class
subclass of: GENEPIO_0100586
has curation status: requires discussion
definition: A data field which describes the email address of the agency responsible for submission of the sequence.
editor note: Not to be confused with 'sequenced by contact email' http://purl.obolibrary.org/obo/GENEPIO_0100422
alternative term: sequence submitter contact email
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: sequence submitter contact email slot
comment: Example Guidance: The email address can represent a specific individual or laboratory.

sequence submitter contact address field
type: Class
subclass of: GENEPIO_0100586
example of usage: 123 Sunnybrooke St, Toronto, Ontario, M4P 1L6, Canada
has curation status: requires discussion
definition: A data field which describes the mailing address of the agency responsible for submission of the sequence.
editor note: Not to be confused with 'sequenced by contact address' http://purl.obolibrary.org/obo/GENEPIO_0100423
alternative term: sequence submitter contact address
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: sequence submitter contact address slot
comment: Example Guidance: The mailing address should be in the format: Street number and name, City, State/Province/Region, Country, Postal Code/Zip Code

well water - treated
type: Class
subclass of: water well
subclass of: treated water - ambient temperature

Well water - untreated
type: Class
subclass of: water well
subclass of: untreated water

organism datum
type: Class
subclass of: IAO_0000027
subclass of: Restriction
  on property: is about
  some values from: OBI_0100026

organism role
type: Class
subclass of: role
subclass of: Restriction
  on property: characteristic of
  some values from: OBI_0100026
definition: A role which inheres in an organism and is realized by the process of being alive.

isolate organism role
type: Class
subclass of: organism role

sample collection date field
type: Class
subclass of: GENEPIO_0100632
example of usage: 2020-03-19
has curation status: requires discussion
definition: A data field which describes the date on which the sample was collected.
alternative term: sample collection date
alternative term: sample_collection_date
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: sample collection date slot
comment: Example Guidance: Record the collection date accurately in the template. Required granularity includes year, month and day. Before sharing this data, ensure this date is not considered identifiable information. If this date is considered identifiable, it is acceptable to add .jitter. to the collection date by adding or subtracting calendar days. Do not change the collection date in your original records. Alternatively, ”received date” may be used as a substitute in the data you share. The date should be provided in ISO 8601 standard format .YYYY-MM-DD..

animal role
type: Class
equivalent class: Class
  intersection of: organism role
  intersection of: Restriction
    on property: characteristic of
    some values from: NCBITaxon_33213
subclass of: organism role
subclass of: Restriction
  on property: characteristic of
  some values from: NCBITaxon_33213

sample collection date precision field
type: Class
subclass of: GENEPIO_0100632
example of usage: year
has curation status: requires discussion
definition: A data field which describes the precision to which the "sample collection date" was provided.
alternative term: sample collection date precision
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: sample collection date precision slot
comment: Used to further describe the .sample collection date field. [GENEPIO:0001174]. Example Guidance: Provide the precision of granularity to the .day., .month., or .year. for the date provided in the .sample collection date. field. The .sample collection date. will be truncated to the precision specified upon export; .day. for .YYYY-MM-DD., .month. for .YYYY-MM., or .year. for .YYYY..

sample received date field
type: Class
subclass of: GENEPIO_0100632
example of usage: 2020-03-20
has curation status: requires discussion
definition: A data field which describes the date on which the sample was received.
alternative term: sample received date
alternative term: sample_received_date
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: sample received date slot
comment: Example Guidance: The date the sample was received by a lab that was not the point of collection. ISO 8601 standard .YYYY-MM-DD..

geo_loc name (country) field
type: Class
subclass of: GENEPIO_0100629
example of usage: South Africa [GAZ:00001094]
has curation status: requires discussion
definition: A data field which describes the country of origin of the sample.
alternative term: geo_loc name (country)
alternative term: geographical location country name
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: geo_loc name (country) slot
has exact synonym: geographical location country name field
has exact synonym: geographical location country name slot
comment: Example Guidance: Provide the country name from the pick list in the template

plant role
type: Class
equivalent class: Class
  intersection of: organism role
  intersection of: Restriction
    on property: characteristic of
    some values from: NCBITaxon_33090
subclass of: organism role
subclass of: Restriction
  on property: characteristic of
  some values from: NCBITaxon_33090

taxonomic datum
type: Class
subclass of: IAO_0000027
has curation status: IAO_0000123
definition editor: Damion Dooley

geo_loc name (state/province/territory) field
type: Class
subclass of: GENEPIO_0100629
example of usage: Western Cape
has curation status: requires discussion
definition: A data field which describes the state, province, or territory of origin of the sample.
alternative term: geo_loc name (state/province/territory)
alternative term: geographical location state or province or territory name
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: geo_loc name (state/province/territory) slot
has exact synonym: geographical location state or province or territory name field
has exact synonym: geographical location state or province or territory name slot
comment: Example Guidance: Provide the state/province/territory name from the GAZ geography ontology. Search for geography terms here: https://www.ebi.ac.uk/ols/ontologies/gaz

infectious disease treatment
type: Class
subclass of: patient as host datum
has curation status: IAO_0000428
definition: A course of treatment designed to resolve an infectious disease
definition editor: Damion Dooley

antimicrobial resistance test drug
type: Class
equivalent class: Class
  intersection of: polyatomic entity
  intersection of: Restriction
    on property: has role
    some values from: antimicrobial agent
subclass of: polyatomic entity
subclass of: Restriction
  on property: has role
  some values from: antimicrobial agent
has curation status: IAO_0000428
definition: This is a collection of drugs used to test antimicrobial resistance.
editor note: This is a class of chemicals by use. They are organized more indirectly in CHEBI via 'has role' some 'antimicrobial agent'. Note: NCBI provides special requirements for antibiotic test-selection for BETA-LACTAMASE, see https://www.ncbi.nlm.nih.gov/biosample/docs/beta-lactamase/ Damion Dooley note: Used http://cts.fiehnlab.ucdavis.edu/conversion/batchConvert to convert antibiotic name to CHEBI entries. 60% match, some matches off, had to curate hits manually. Note that this is a longer list of antibiotics that we will need to incorporate, perhaps through ARO: https://www.ncbi.nlm.nih.gov/biosample/docs/antibiogram/?format=txt
definition editor: Damion Dooley

geo_loc name (city) field
type: Class
subclass of: GENEPIO_0100629
example of usage: Vancouver
has curation status: requires discussion
definition: A data field which describes the city of origin of the sample.
alternative term: geo_loc name (city)
alternative term: geographical location city name
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: geo_loc name (city) slot
has exact synonym: geographical location city name field
has exact synonym: geographical location city name slot
comment: Example Guidance: Provide the city name from the GAZ geography ontology. Search for geography terms here: https://www.ebi.ac.uk/ols/ontologies/gaz

organism field
type: Class
subclass of: GENEPIO_0100586
example of usage: Severe acute respiratory syndrome coronavirus 2 [NCBITaxon:2697049]
has curation status: requires discussion
definition: A data field which describes the taxonomic name of the organism.
alternative term: organism
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: organism slot
comment: Example Guidance: Put the genus and species (and subspecies if applicable) of the bacteria, if known. The standardized term can be sourced from this look-up service: https://www.ebi.ac.uk/ols/ontologies/ncbitaxon.

analytic datum
type: Class
subclass of: IAO_0000027
has curation status: IAO_0000428
definition editor: Damion Dooley
comment: Judgements here are marked down after an agent's (doctor/veterenary) analysis of symptoms.

obsolete: type of illness
type: Class
definition editor: Damion Dooley
term replaced by: disease
deprecated: true

specimen with confirmed presence of disease agent
type: Class
subclass of: organism datum
has curation status: IAO_0000428
definition: A specimen which has been confirmed by laboratory test(s) to contain a disease-causing agent such as a pathogen
definition editor: Damion Dooley

purpose of sampling field
type: Class
subclass of: GENEPIO_0100586
example of usage: Diagnostic testing [GENEPIO:0100002]
has curation status: requires discussion
definition: A data field which describes the reason that the sample was collected.
alternative term: purpose of sampling
alternative term: purpose_of_sampling
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: purpose of sampling slot
comment: Example Guidance: Select a value from the pick list in the template.

purpose of sampling details field
type: Class
subclass of: GENEPIO_0100586
example of usage: Screening of bat specimens in museum collections.
has curation status: requires discussion
definition: A data field which describes additional information pertaining to the reason the sample was collected.
alternative term: purpose of sampling details
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: purpose of sampling details slot
comment: Example Guidance: Provide a free text description of the sampling strategy or samples collected.

third party lab service provider name field
type: Class
subclass of: GENEPIO_0100586
example of usage: Switch Health
has curation status: requires discussion
definition: A data field which describes the name of the third party company or laboratory that provided services.
alternative term: third party lab service provider name
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: third party lab service provider name slot
comment: Example Guidance: Provide the full, unabbreviated name of the company or laboratory.

NML submitted specimen type field
type: Class
subclass of: GENEPIO_0100586
example of usage: swab
has curation status: requires discussion
definition: A data field which describes the type of specimen submitted to the National Microbiology Laboratory (NML) for testing.
alternative term: NML submitted specimen type
alternative term: National Microbiology Laboratory submitted specimen type
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: NML submitted specimen type slot
has exact synonym: National Microbiology Laboratory submitted specimen type field
has exact synonym: National Microbiology Laboratory submitted specimen type slot
comment: Example Guidance: This information is required for upload through the CNPHI LaSER system. Select the specimen type from the pick list provided. If sequence data is being submitted rather than a specimen for testing, select “Not Applicable”.

dietary restriction
type: Class
subclass of: disposition

patient type
type: Class
subclass of: NCIT C25190
has curation status: IAO_0000428
definition: A person which has a patient care role.
definition editor: Damion Dooley

obsolete: mother
type: Class
term replaced by: NCIT C25189
deprecated: true

Related specimen relationship type field
type: Class
subclass of: GENEPIO_0100586
example of usage: Specimen sampling methods testing
has curation status: requires discussion
definition: A data field which describes the relationship of the current specimen to the specimen/sample previously submitted to the repository.
alternative term: Related specimen relationship type
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: Related specimen relationship type slot
comment: Example Guidance: Provide the tag that describes how the previous sample is related to the current sample being submitted from the pick list provided, so that the samples can be linked and tracked in the system.

anatomical material field
type: Class
subclass of: GENEPIO_0100586
example of usage: Blood [UBERON:0000178]
has curation status: requires discussion
definition: A data field which describes the substance obtained from an anatomical part of an organism.
alternative term: anatomical material
alternative term: anatomical_material
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: anatomical material slot
comment: Example Guidance: Provide a descriptor if an anatomical material was sampled. Use the pick list provided in the template. If a desired term is missing from the pick list, use this look-up service to identify a standardized term: https://www.ebi.ac.uk/ols/ontologies/uberon. If not applicable, leave blank.

subject disease outcome
type: Class
subclass of: GENEPIO_0002018
term source: NCBI BioSample
user interface feature: depth:1
user interface feature: lookup
has curation status: IAO_0000428
definition: A subject disease outcome is an assessment of the persistence of a given disease course in a subject (patient)
definition editor: Damion Dooley
comment: Note that this is closely related to OGMS_0000063 "disease course" that lists chronic, progressive, transient and accute processes.

anatomical part field
type: Class
subclass of: GENEPIO_0100586
example of usage: Nasopharynx (NP) [UBERON:0001728]
has curation status: requires discussion
definition: A data field which describes the anatomical part of an organism.
alternative term: anatomical part
alternative term: anatomical_part
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: anatomical part slot
comment: Example Guidance: Provide a descriptor if an anatomical part was sampled. Use the pick list provided in the template. If a desired term is missing from the pick list, use this look-up service to identify a standardized term: https://www.ebi.ac.uk/ols/ontologies/uberon. If not applicable, leave blank.

body product field
type: Class
subclass of: GENEPIO_0100586
example of usage: Feces [UBERON:0001988]
has curation status: requires discussion
definition: A data field which describes the substance excreted/secreted from an organism.
alternative term: body product
alternative term: body_product
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: body product slot
comment: Example Guidance: Provide a descriptor if a body product was sampled. Use the pick list provided in the template. If a desired term is missing from the pick list, use this look-up service to identify a standardized term: https://www.ebi.ac.uk/ols/ontologies/uberon. If not applicable, leave blank.

treated water - warm/hot
type: Class
subclass of: water exposure by source

jacuzzi water
type: Class
subclass of: treated water - warm/hot

spa water
type: Class
subclass of: treated water - warm/hot

whirlpool water
type: Class
subclass of: treated water - warm/hot

patient as host datum
type: Class
subclass of: GENEPIO_0002018
subclass of: Restriction
  on property: is about
  some values from: IDO_0000531
has curation status: IAO_0000428
definition: A host datum is a datum that pertains to infection-related information about an organism (animal or human) who is likely bearing a pathogen
definition editor: Damion Dooley

environmental material field
type: Class
subclass of: GENEPIO_0100586
example of usage: Soil, water, sewage, door handle, bed handrail, face mask, etc. Example input: Face mask [OBI:0002787]
has curation status: requires discussion
definition: A data field which describes the substance obtained from the natural or man-made environment.
alternative term: environmental material
alternative term: environmental_material
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: environmental material slot
comment: Example Guidance: Provide a descriptor if an environmental material was sampled. Use the pick list provided in the template. If a desired term is missing from the pick list, use this look-up service to identify a standardized term: https://www.ebi.ac.uk/ols/ontologies/envo. If not applicable, leave blank.

pregnancy history item
type: Class
subclass of: IAO_0000416

date of conception
type: Class
subclass of: pregnancy history item

lifespan history record
type: Class
subclass of: draft GenEpiO component record
has curation status: IAO_0000428
definition editor: Damion Dooley

obsolete: food cooking method
type: Class
term replaced by: food cooking
deprecated: true

obsolete: food preservation method
type: Class
term replaced by: food preservation process
deprecated: true

infectious disease case datum
type: Class
subclass of: IAO_0000027

laboratory data
type: Class
subclass of: IAO_0000027

environmental site field
type: Class
subclass of: GENEPIO_0100586
example of usage: Hospital, wet market, bat cave, etc. Example input: Hospital [ENVO:00002173]
has curation status: requires discussion
definition: A data field which describes an environmental location as a site in the natural or built environment.
alternative term: environmental site
alternative term: environmental_site
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: environmental site slot
comment: Example Guidance: Provide a descriptor if an environmental site was sampled. Use the pick list provided in the template. If a desired term is missing from the pick list, use this look-up service to identify a standardized term: https://www.ebi.ac.uk/ols/ontologies/envo. If not applicable, leave blank.

collection device field
type: Class
subclass of: GENEPIO_0100586
example of usage: Swab [GENEPIO:0100027]
has curation status: requires discussion
definition: A data field which describes the instrument or container used to collect the sample.
alternative term: collection device
alternative term: collection_device
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: collection device slot
comment: Example Guidance: Provide a descriptor if a collection device was used for sampling. Use the pick list provided in the template. If a desired term is missing from the pick list, use this look-up service to identify a standardized term: https://www.ebi.ac.uk/ols/ontologies/obi. If not applicable, leave blank.

specimen record
type: Class
subclass of: draft GenEpiO component record
has curation status: IAO_0000428
definition editor: Damion Dooley

specimen source material category
type: Class
subclass of: portion of material
has curation status: IAO_0000428
definition: The type of material from which the specimen was obtained. Specimens are usually categorized as food, body products or tissues, or environmental material.
definition editor: Damion Dooley
alternative term: specimen type (host or environmental context)

symbiotic role
type: Class
subclass of: isolate organism role
definition: Organism has a symbiotic relationship with host

obsolete: NCBI BioSample attribute package
type: Class
term replaced by: specimen category
deprecated: true

obsolete: host sample material
type: Class
definition editor: Damion Dooley
term replaced by: subject anatomical site
term replaced by: subject body product
deprecated: true

collection method field
type: Class
subclass of: GENEPIO_0100586
example of usage: Bronchoalveolar lavage (BAL) [GENEPIO:0100032]
has curation status: requires discussion
definition: A data field which describes the process used to collect the sample.
alternative term: collection method
alternative term: collection_method
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: collection method slot
comment: Example Guidance: Provide a descriptor if a collection method was used for sampling. Use the pick list provided in the template. If a desired term is missing from the pick list, use this look-up service to identify a standardized term: https://www.ebi.ac.uk/ols/ontologies/obi. If not applicable, leave blank.

collection protocol field
type: Class
subclass of: GENEPIO_0100586
example of usage: SC2SamplingProtocol 1.2
has curation status: requires discussion
definition: A data field which describes the name and version of a particular protocol used for sampling.
alternative term: collection protocol
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: collection protocol slot
comment: Example Guidance: Provide the name and version of the protocol used to collect the samples.

food specimen detail
type: Class
subclass of: food specimen datum
has curation status: IAO_0000428
definition editor: Damion Dooley

patient specimen
type: Class
subclass of: human clinical specimen

environmental specimen
type: Class
subclass of: specimen source material category
has_broad_synonym: environmental
database_cross_reference: NCBI Biosample: environmental (swab or sampling)

animal specimen
type: Class
subclass of: specimen source material category
has curation status: IAO_0000428
definition: A specimen extracted from an animal
definition editor: Damion Dooley

built environment specimen
type: Class
subclass of: environmental specimen

food specimen
type: Class
subclass of: specimen source substance
subclass of: environmental specimen

natural environment specimen
type: Class
subclass of: environmental specimen

exposure event person
type: Class
subclass of: material entity
has curation status: IAO_0000428
definition: The type of person a patient had epidemiological (i.e. close proximity) contact with.
definition editor: Damion Dooley

specimen processing field
type: Class
subclass of: GENEPIO_0100586
example of usage: Virus passage [GENEPIO:0100039]
has curation status: requires discussion
definition: A data field which describes any processing applied to the sample during or after receiving the sample.
alternative term: specimen processing
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: specimen processing slot
comment: Example Guidance: Critical for interpreting data. Select all the applicable processes from the pick list. If virus was passaged, include information in .lab host., .passage number., and .passage method. fields. If none of the processes in the pick list apply, put .not applicable..

lab host field
type: Class
subclass of: GENEPIO_0100586
example of usage: Vero E6 cell line [BTO:0004755]
has curation status: requires discussion
definition: A data field which describes the name and description of the laboratory host used to propagate the source organism or material from which the sample was obtained.
alternative term: lab host
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: lab host slot
comment: Example Guidance: Type of cell line used for propagation. Select a value form the pick list. If not passaged, put .not applicable..

exposure group statistics record
type: Class
subclass of: draft GenEpiO component record
has curation status: IAO_0000428
definition editor: Damion Dooley
comment: An exposure group statistics record is a sumary of disease outbreak statistics on a certain date of a group of humans or animals potentially exposed to a pathogen.

symptom history item
type: Class
subclass of: IAO_0000416
has curation status: IAO_0000428

health state record
type: Class
subclass of: draft GenEpiO component record
has curation status: IAO_0000428
definition editor: Damion Dooley

obsolete: swab
type: Class
term replaced by: http://purl.obolibrary.org/obo/NCIT_C17627
deprecated: true

passage number field
type: Class
subclass of: GENEPIO_0100586
example of usage: 3
has curation status: requires discussion
definition: A data field which describes the number of passages.
alternative term: passage number
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: passage number slot
comment: Example Guidance: Provide number of known passages. If not passaged, put .not applicable.

obsolete: fluid - aspirate
type: Class
definition: [WHICH DEFINITION?] See http://medical-dictionary.thefreedictionary.com/aspirate
definition editor: Damion Dooley
term replaced by: NCIT C13347
deprecated: true

passage method field
type: Class
subclass of: GENEPIO_0100586
example of usage: AVL buffer+30%EtOH lysate received from Respiratory Lab. P3 passage in Vero-1 via bioreactor large-scale batch passage. P3 batch derived from the SP-2/reference lab strain.
has curation status: requires discussion
definition: A data field which describes how the organism was passaged.
alternative term: passage method
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: passage method slot
comment: Example Guidance: Free text. Provide a short description. If not passaged, put .not applicable..

biomaterial extracted field
type: Class
subclass of: GENEPIO_0100586
example of usage: RNA (Total) [OBI:0000895]
has curation status: requires discussion
definition: A data field which describes the biomaterial extracted from samples for the purpose of sequencing.
alternative term: biomaterial extracted
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: biomaterial extracted slot
comment: Example Guidance: Provide the biomaterial extracted from the pick list in the template.

plant rinse
type: Class
equivalent class: Class
  intersection of: GENEPIO_0002016
  intersection of: GENEPIO_0002749
subclass of: GENEPIO_0002016
subclass of: GENEPIO_0002749
has curation status: IAO_0000428
definition: Plant rinse is a rinse derived from plant material from one or more plants.
definition editor: Damion Dooley

host information field category
type: Class
subclass of: data field category
example of usage: An instance of the "host information field category" that contains the "host (scientific name) field".
has curation status: ready for release
definition: A data field category which refers to host information fields.
alternative term: host information
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: host information slot category

outbreak animal exposure event location
type: Class
subclass of: awaiting ontology review
definition editor: Damion Dooley

animal exposure process
type: Class
subclass of: process
definition editor: Damion Dooley

animal exposure event by material
type: Class
subclass of: NCIT C79916
definition editor: Damion Dooley

exposure by human contact
type: Class
subclass of: human to human exposure process
definition editor: Damion Dooley

obsolete: human exposure activity type
type: Class
definition editor: Damion Dooley
has obsolescence reason: unnecessary distinction
term replaced by: human to human exposure process
deprecated: true

outbreak human exposure event location
type: Class
subclass of: outbreak exposure event location
definition editor: Damion Dooley

human to human exposure process
type: Class
subclass of: process
has curation status: IAO_0000428
definition: A process in which one or more humans may be exposed to one or more contagious human infectious disease carriers.
definition editor: Damion Dooley

water exposure by source
type: Class
subclass of: NCIT C79916

human water activity
type: Class
subclass of: human general activity

health authority
type: Class
subclass of: OBI_0000245
comment: This list would be customized to include organizations local to an application's software installation. It is an example of a set of ontology terms that would best be organized by a central authority if federated installations need to share investigator contact info for example.

symptom record
type: Class
subclass of: draft GenEpiO component record
user interface feature: order: HP:0000118 # symptom FLU:0000976 # onset GENEPIO:0001789 # cessation GENEPIO:0001784 # duration
has curation status: IAO_0000428
definition editor: Damion Dooley

PFGE pattern
type: Class
subclass of: test specification
subclass of: Restriction
  on property: is about
  some values from: NCIT C53471
definition: A visual pattern caused by DNA fragments concentrated in stratefied bands in a Pulsed-field gel electrophoresis (PFGE) gel plate.

phage type salmonella (DT)
type: Class
subclass of: test specification
has curation status: IAO_0000428

phage type e-coli 0157 (PT)
type: Class
subclass of: test specification
has curation status: IAO_0000428

sequence record
type: Class
subclass of: draft GenEpiO component record
has curation status: IAO_0000428
definition editor: Damion Dooley

outbreak exposure event location
type: Class
subclass of: NCIT C79916
has curation status: IAO_0000428
definition: A type of built structure that is suspected to be related to an outbreak investigation.
definition editor: Damion Dooley

lab test history record
type: Class
subclass of: draft GenEpiO component record
has curation status: IAO_0000428
definition editor: Damion Dooley

obsolete: earth surface
type: Class
term replaced by: RBO_00000017
deprecated: true

data specification
type: Class
subclass of: OBI_0000658
has curation status: IAO_0000428
definition: A data specification is a specification of a data structure that can hold a categorical, textual or numeric variable, or that has such variables or other data structures as component parts.
editor note: A data standard, may be defined as a data specification, but a data specification isn't necessarily a formal or de-facto data standard - it would have to be sanctioned by a community of users and developers to take on that status.
definition editor: Damion Dooley

specimen history item
type: Class
subclass of: specimen datum
subclass of: IAO_0000416
has curation status: IAO_0000428
definition: A specimen history item is a time-related datum about a particular specimen
definition editor: Damion Dooley

host (common name) field
type: Class
subclass of: GENEPIO_0100628
example of usage: Human [NCBITaxon:9606]
has curation status: requires discussion
definition: A host field which describes the commonly used name of the host.
alternative term: host (common name)
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: host (common name) slot
comment: Example Guidance: Common name or scientific name are required if there was a host. Common name examples e.g. human, bat. Select a value from the pick list. If the sample was environmental, put .not applicable..

host (scientific name) field
type: Class
subclass of: GENEPIO_0100628
example of usage: Homo sapiens [NCBITaxon:9606]
has curation status: requires discussion
definition: A host field which describes the taxonomic or scientific name of the host.
alternative term: host (scientific name)
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: host (scientific name) slot
comment: Example Guidance: Common name or scientific name are required if there was a host. Scientific name examples e.g. Homo sapiens. Select a value from the pick list. If the sample was environmental, put .not applicable..

host health state field
type: Class
subclass of: GENEPIO_0100628
example of usage: Asymptomatic [NCIT:C3833]
has curation status: requires discussion
definition: A host field which describes the health status of the host at the time of sample collection.
alternative term: host health state
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: host health state slot
comment: Example Guidance: If known, select a value from the pick list.

host health status details field
type: Class
subclass of: GENEPIO_0100628
example of usage: Hospitalized (ICU) [GENEPIO:0100046]
has curation status: requires discussion
definition: A host data field which describes additional information pertaining to the health or disease status of the host at time of collection.
alternative term: host health status details
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: host health status details slot
comment: Example Guidance: If known, select a value from the pick list.

host health outcome field
type: Class
subclass of: GENEPIO_0100628
example of usage: Recovered [NCIT:C49498]
has curation status: requires discussion
definition: A host data field which describes the disease outcome in the host.
alternative term: host health outcome
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: host health outcome slot
comment: Example Guidance: If known, select a value from the pick list.

host disease field
type: Class
subclass of: GENEPIO_0100628
example of usage: COVID-19 [MONDO:0100096]
has curation status: requires discussion
definition: A host data field which describes the name of the disease experienced by the host.
alternative term: host disease
alternative term: host_disease
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: host disease slot
comment: Example Guidance: This field is only required if there was a host. If the host was a human select COVID-19 from the pick list. If the host was asymptomatic, this can be recorded under “host health state details”. .COVID-19. should still be provided if patient is asymptomatic. If the host is not human, and the disease state is not known or the host appears healthy, put “not applicable”.

host age field
type: Class
subclass of: GENEPIO_0100628
example of usage: 79
has curation status: requires discussion
definition: A host data field which describes the age of the host at the time of sampling.
alternative term: host age
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: host age slot
comment: Example Guidance: If known, provide age. Age-binning is also acceptable.

host age unit field
type: Class
subclass of: GENEPIO_0100628
example of usage: year [UO:0000036]
has curation status: requires discussion
definition: A host data field which describes the units used to measure the host's age.
alternative term: host age unit
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: host age unit slot
comment: Example Guidance: If known, provide the age units used to measure the host's age from the pick list.

host age bin field
type: Class
subclass of: GENEPIO_0100628
example of usage: 50 - 59 [GENEPIO:0100054]
has curation status: requires discussion
definition: A host data field which describes the age category of the host at the time of sampling.
alternative term: host age bin
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: host age bin slot
comment: Example Guidance: Age bins in 10 year intervals have been provided. If a host's age cannot be specified due to provacy concerns, an age bin can be used as an alternative.

host gender field
type: Class
subclass of: GENEPIO_0100628
example of usage: Male [NCIT:C46109]
has curation status: requires discussion
definition: A host data field which describes the gender of the host at the time of sample collection.
alternative term: host gender
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: host gender slot
comment: Example Guidance: If known, select a value from the pick list.

host residence geo_loc name (country) field
type: Class
subclass of: GENEPIO_0100630
example of usage: South Africa [GAZ:00001094]
has curation status: requires discussion
definition: A host geographical location field which describes the country where the host resides.
alternative term: host residence geo_loc name (country)
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: host residence geo_loc name (country) slot
has exact synonym: host residence geographical location country name field
has exact synonym: host residence geographical location country name slot
comment: Example Guidance: If known, select a value from the pick list.

host residence geo_loc name (state/province/territory) field
type: Class
subclass of: GENEPIO_0100630
example of usage: Quebec
has curation status: requires discussion
definition: A host geographical location field which describes the state or province or territory of residence of the host.
alternative term: host residence geo_loc name (state/province/territory)
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: host residence geo_loc name (state/province/territory) slot
has exact synonym: host residence geographical location state or province or territory name field
has exact synonym: host residence geographical location state or province or territory name slot
comment: Example Guidance: Select the province/territory name from pick list provided in the template.

host subject ID field
type: Class
subclass of: GENEPIO_0100628
subclass of: GENEPIO_0100631
example of usage: BCxy123
has curation status: requires discussion
definition: A host data field which describes the unique identifier by which each host can be referred to.
alternative term: host subject ID
alternative term: host subject identifier
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: host subject ID slot
has exact synonym: host subject identifier field
has exact synonym: host subject identifier slot
comment: Example Guidance: Should be a unique, user-defined identifier. This ID can help link laboratory data with epidemiological data, however, is likely sensitive information. Consult the data steward.

symptom onset date field
type: Class
subclass of: GENEPIO_0100632
example of usage: 2020-03-16
has curation status: requires discussion
definition: A data field which describes the date on which the symptoms began or were first noted.
alternative term: symptom onset date
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: symptom onset date slot
comment: Example Guidance: If known, provide the symptom onset date in ISO 8601 standard format .YYYY-MM-DD..

signs and symptoms field
type: Class
subclass of: GENEPIO_0100586
example of usage: Cough [HP:0012735], Fever [HP:0001945], Rigors (fever shakes) [HP:0025145]
has curation status: requires discussion
definition: A data field which describes the perceived change in function or sensation (loss, disturbance or appearance) indicative of a disease, reported by a patient.
editor note: Generally, "symptoms" are subjective and reported by the patient, while "signs" are observed and reported by a clinician. However, data collected using case report forms are usually relayed by the patient and thus both are deamed "reported by a patient" in this definition.
alternative term: signs and symptoms
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: signs and symptoms slot
comment: Example Guidance: Select all of the symptoms experienced by the host from the pick list.

pre-existing conditions and risk factors field
type: Class
subclass of: GENEPIO_0100586
example of usage: Asthma [HP:0002099]
has curation status: requires discussion
definition: A data field which describes a medical condition that existed prior to the current infection (pre-existing condition) or a variable associated with an increased risk of disease or infection (risk factor).
alternative term: pre-existing conditions and risk factors
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: pre-existing conditions and risk factors slot
comment: Example Guidance: Select all of the pre-existing conditions and risk factors experienced by the host from the pick list. If the desired term is missing, contact the curation team.

complications field
type: Class
subclass of: GENEPIO_0100586
example of usage: Acute respiratory failure [MONDO:0001208]
has curation status: requires discussion
definition: A data field which describes medical complications that are believed to have occurred as a result of host disease.
alternative term: complications
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: complications slot
comment: Example Guidance: Select all of the complications experienced by the host from the pick list.

host vaccination information field category
type: Class
subclass of: data field category
example of usage: An instance of the "host vaccination information field category" that contains the "host vaccination status field".
has curation status: ready for release
definition: A data field category which refers to host vaccination information fields.
alternative term: host vaccination information
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: host vaccination information slot category

host vaccination status field
type: Class
subclass of: GENEPIO_0100633
example of usage: Fully Vaccinated [GENEPIO:0100100]
has curation status: requires discussion
definition: A data field which describes the vaccination status of the host.
alternative term: host vaccination status
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: host vaccination status slot
comment: Statuses associated with this field: fully vaccinated, partially vaccinated, or not vaccinated. Example Guidance: Select the vaccination status of the host from the pick list.

number of vaccine doses received field
type: Class
subclass of: GENEPIO_0100633
example of usage: 2
has curation status: requires discussion
definition: A data field which describes the number of doses of the vaccine received by the host.
alternative term: number of vaccine doses received
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: number of vaccine doses received slot
comment: Example Guidance: Record how many doses of the vaccine the host has received.

host exposure information field category
type: Class
subclass of: data field category
example of usage: An instance of the "host exposure information field category" that contains the "exposure event field".
has curation status: ready for release
definition: A data field category which refers to host exposure information fields.
alternative term: host exposure information
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: host exposure information slot category

location of exposure geo_loc name (country) field
type: Class
subclass of: GENEPIO_0100630
subclass of: GENEPIO_0100637
example of usage: South Africa [GAZ:00001094]
has curation status: requires discussion
definition: A geographical data field which describes the country where the host was likely exposed to the causative agent of the illness.
alternative term: location of exposure geo_loc name (country)
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: location of exposure geo_loc name (country) slot
has exact synonym: location of exposure geographical location country name field
has exact synonym: location of exposure geographical location country name slot
comment: Example Guidance: This location pertains to the country the host was believed to be exposed, and may not be the same as the host's country of residence. If known, provide the country name from the pick list.

destination of most recent travel (city) field
type: Class
subclass of: GENEPIO_0100629
example of usage: New York City
has curation status: requires discussion
definition: A geographical data field which describes the name of the city that was the destination of most recent travel.
alternative term: destination of most recent travel (city)
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: destination city of most recent travel field
has exact synonym: destination city of most recent travel slot
has exact synonym: destination of most recent travel (city) slot
comment: Example Guidance: Provide the name of the city that the host travelled to. Use this look-up service to identify the standardized term: https://www.ebi.ac.uk/ols/ontologies/gaz

destination of most recent travel (state/province/territory) field
type: Class
subclass of: GENEPIO_0100629
example of usage: California
has curation status: requires discussion
definition: A geographical data field which describes the name of the province that was the destination of most recent travel.
alternative term: destination of most recent travel (state/province/territory)
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: destination of most recent travel (state/province/territory) slot
has exact synonym: destination state or province or territory of most recent travel field
has exact synonym: destination state or province or territory of most recent travel slot
comment: Example Guidance: Provide the name of the state/province/territory that the host travelled to. Use this look-up service to identify the standardized term: https://www.ebi.ac.uk/ols/ontologies/gaz

destination of most recent travel (country) field
type: Class
subclass of: GENEPIO_0100629
example of usage: United Kingdom [GAZ:00002637]
has curation status: requires discussion
definition: A geographical data field which describes the name of the country that was the destination of most recent travel.
alternative term: destination of most recent travel (country)
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: destination of most recent travel (country) slot
comment: Example Guidance: Provide the name of the country that the host travelled to. Use this look-up service to identify the standardized term: https://www.ebi.ac.uk/ols/ontologies/gaz

most recent travel departure date field
type: Class
subclass of: GENEPIO_0100632
example of usage: 2020-03-16
has curation status: requires discussion
definition: A date field which describes the date of an individual's most recent departure from their primary residence (at time of data collection) on a journey to one or more other locations.
alternative term: most recent travel departure date
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: most recent travel departure date slot
comment: Example Guidance: Provide the travel departure date in ISO 8601 standard format .YYYY-MM-DD..

most recent travel return date field
type: Class
subclass of: GENEPIO_0100632
example of usage: 2020-04-26
has curation status: requires discussion
definition: A date field which describes the date of an individual's most recent return to some residence from a journey originating at that residence.
alternative term: most recent travel return date
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: most recent travel return date slot
comment: Example Guidance: Provide the travel return date in ISO 8601 standard format .YYYY-MM-DD..

travel history field
type: Class
subclass of: GENEPIO_0100586
example of usage: Canada, Vancouver; USA, Seattle; Italy, Milan
has curation status: requires discussion
definition: A data field which describes an individuals travel history in last six months.
alternative term: travel history
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: travel history slot
comment: Example Guidance: Specify the countries (and more granular locations if known) travelled in the last six months; can include multiple travels. Separate multiple travel events with a semicolon. Provide as free text.

exposure event field
type: Class
subclass of: GENEPIO_0100637
example of usage: Mass Gathering [GENEPIO:0100237]
has curation status: requires discussion
definition: A data field which describes an event leading to exposure.
alternative term: exposure event
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: exposure event slot
comment: Example Guidance: If known, select the exposure event from the pick list.

exposure contact level field
type: Class
subclass of: GENEPIO_0100637
example of usage: Direct (human-to-human contact) [TRANS:0000001]
has curation status: requires discussion
definition: A data field which describes the exposure transmission contact type.
alternative term: exposure contact level
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: exposure contact level slot
comment: Example Guidance: Select direct or indirect exposure from the pick list.

host role field
type: Class
subclass of: GENEPIO_0100628
example of usage: Patient [OMRSE:00000030]
has curation status: requires discussion
definition: A data field which describes the role of the host in relation to the exposure setting.
alternative term: host role
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: host role slot
comment: Example Guidance: Select the host's personal role(s) from the pick list provided in the template. If the desired term is missing, contact the curation team.

diagnostic test
type: Class
subclass of: OBI_0000070
has curation status: IAO_0000428
definition editor: Damion Dooley

obsolete: sample datum
type: Class
definition editor: Damion Dooley
deprecated: true

obsolete: laboratory sequencing datum
type: Class
definition: A laboratory sequencing datum is a datum related to the sequencing assay process applied to an isolate.
definition editor: Damion Dooley
term replaced by: laboratory sequencing datum
deprecated: true

genomic sequencing annotation datum
type: Class
subclass of: IAO_0000027

lab test record
type: Class
subclass of: draft GenEpiO component record
has curation status: IAO_0000428
definition editor: Damion Dooley
comment: ISSUE: lab test results are appropriate to lab test types. Logic around that?

sequencing assembly datum
type: Class
subclass of: laboratory sequencing datum
subclass of: Restriction
  on property: is about
  some values from: NCIT C53471

container record
type: Class
subclass of: draft GenEpiO component record
has curation status: IAO_0000428
definition: A container id is an identifier that refers to a container object about a patient specimen. Container ids are referenced in clinical patient records reported to be suspect, or lab test results.
definition editor: Damion Dooley

health care personal identifier
type: Class
subclass of: IAO_0000577
definition editor: Damion Dooley
definition editor: identifier of a person with the context of a health care system

exposure setting field
type: Class
subclass of: GENEPIO_0100637
example of usage: Healthcare Setting [GENEPIO:0100201]
has curation status: requires discussion
definition: A data field which describes the setting leading to exposure.
alternative term: exposure setting
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: exposure setting slot
comment: Example Guidance: Select the host exposure setting(s) from the pick list provided in the template. If a desired term is missing, contact the curation team.

strain identifier
type: Class
subclass of: IAO_0000577
subclass of: Restriction
  on property: is about
  some values from: NCIT C14419
has curation status: IAO_0000428
definition: A strain identifier is the unique microbial or eukaryotic strain name from a reference database that a sample has been matched to.
definition editor: Damion Dooley

line list object
type: Class
subclass of: draft GenEpiO component record
has curation status: IAO_0000428
definition: A line list is a collection of suspected or known disease outbreak cases. It may also include details about healthy patients associated with an exposure event (picnic, concert etc.) who have been interviewed in order to compare food intake, assess risk factors, etc. Note that the health status of people associated with an exposure event can change from healthy or unknown status, to ill patient.
definition editor: Damion Dooley

exposure details field
type: Class
subclass of: GENEPIO_0100637
example of usage: Host role - Other: Bus Driver
has curation status: requires discussion
definition: A data field which describes additional host exposure information.
alternative term: exposure details
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: exposure details slot
comment: Example Guidance: Free text description of the exposure.

awaiting ontology review
type: Class
subclass of: Thing
definition: This class is a temporary holding bin for items that need a class hierarchy home, definition, and/or subclass items. Some classes have subclasses that are currently disjoint in other ontologies like ENVO, so awaiting resolution on such issues.
definition editor: Damion Dooley

GENEPIO_0001433
type: Class
subclass of: user identifier
definition: The IRIDA user ID is a user account identifier provided by the IRIDA.ca system.
definition editor: Damion Dooley

host reinfection information field category
type: Class
subclass of: data field category
example of usage: An instance of the "host reinfection information field category" that contains the "prior infection isolate field".
has curation status: ready for release
definition: A data field category which refers to host reinfection information fields.
alternative term: host reinfection information
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: host reinfection information slot category

prior SARS-CoV-2 infection field
type: Class
subclass of: GENEPIO_0100638
example of usage: Prior infection [GENEPIO:0100234]
has curation status: requires discussion
definition: A data field which describes whether there was prior Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection.
alternative term: prior SARS-CoV-2 infection
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: prior SARS-CoV-2 infection slot
comment: Example Guidance: If known, provide infromation about whether the individual had a previous SARS-CoV-2 infection. Select a value from the pick list.

prior SARS-CoV-2 infection isolate ID field
type: Class
subclass of: isolate identifier
subclass of: GENEPIO_0100638
example of usage: SARS-CoV-2/human/USA/CA-CDPH-001/2020
has curation status: requires discussion
definition: A data field which describes the identifier of the isolate found in the prior Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection.
alternative term: prior SARS-CoV-2 infection isolate
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: prior SARS-CoV-2 infection isolate ID slot
has exact synonym: prior SARS-CoV-2 infection isolate identifier field
has exact synonym: prior SARS-CoV-2 infection isolate identifier slot
comment: Example Guidance: Provide the isolate name of the most recent prior infection. Structure the .isolate. name to be ICTV/INSDC compliant in the following format: .SARS-CoV-2/host/country/sampleID/date..

prior SARS-CoV-2 infection date field
type: Class
subclass of: GENEPIO_0100632
subclass of: GENEPIO_0100638
example of usage: 2021-01-23
has curation status: requires discussion
definition: A data field which describes the date of diagnosis of the prior Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection.
alternative term: prior SARS-CoV-2 infection date
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: prior SARS-CoV-2 infection date slot
comment: Example Guidance: Provide the date that the most recent prior infection was diagnosed. Provide the prior SARS-CoV-2 infection date in ISO 8601 standard format .YYYY-MM-DD..

prior SARS-CoV-2 antiviral treatment field
type: Class
subclass of: GENEPIO_0100638
example of usage: Prior antiviral treatment [GENEPIO:0100037]
has curation status: requires discussion
definition: A data field which describes whether there was prior Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) treatment with an antiviral agent.
alternative term: prior SARS-CoV-2 antiviral treatment
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: prior SARS-CoV-2 antiviral treatment slot
comment: Example Guidance: If known, provide infromation about whether the individual had a previous SARS-CoV-2 antiviral treatment. Select a value from the pick list.

prior SARS-CoV-2 antiviral treatment agent field
type: Class
subclass of: GENEPIO_0100638
example of usage: Remdesivir
has curation status: requires discussion
definition: A data field which describes the name of the antiviral treatment agent administered during the prior Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection.
alternative term: prior SARS-CoV-2 antiviral treatment agent
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: prior SARS-CoV-2 antiviral treatment agent slot
comment: Example Guidance: Provide the name of the antiviral treatment agent administered during the most recent prior infection. If no treatment was administered, put .No treatment.. If multiple antiviral agents were administered, list them all separated by commas.

prior SARS-CoV-2 antiviral treatment date field
type: Class
subclass of: GENEPIO_0100632
subclass of: GENEPIO_0100638
example of usage: 2021-01-28
has curation status: requires discussion
definition: A data field which describeds the date treatment was first administered during the prior Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection.
alternative term: prior SARS-CoV-2 antiviral treatment date
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: prior SARS-CoV-2 antiviral treatment date slot
comment: Example Guidance: Provide the date that the antiviral treatment agent was first administered during the most recenrt prior infection. Provide the prior SARS-CoV-2 treatment date in ISO 8601 standard format .YYYY-MM-DD..

sequencing field category
type: Class
subclass of: data field category
example of usage: An instance of the "sequencing field category" that contains the "sequencing date field".
has curation status: ready for release
definition: A data field category which refers to sequencing information fields.
alternative term: sequencing, sequencing information
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: sequencing information slot category
has exact synonym: sequencing slot category

exposure group healthy count
type: Class
subclass of: STATO_0000047
definition: The count of healthy individuals or animals on a certain date/time from a group that was likely exposed to a pathogen
definition editor: Damion Dooley

exposure group ill count
type: Class
subclass of: STATO_0000047
definition: The count of ill individuals or animals on a certain date/time from a group that was likely exposed to a pathogen
definition editor: Damion Dooley

human general activity
type: Class
subclass of: process

purpose of sequencing field
type: Class
subclass of: GENEPIO_0100586
example of usage: Baseline surveillance (random sampling) [GENEPIO:0100005]
has curation status: requires discussion
definition: A data field which describes the reason that the sample was sequenced.
alternative term: purpose of sequencing
alternative term: purpose_of_sequencing
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: purpose of sequencing slot
comment: Example Guidance: The reason why a sample was originally collected may differ from the reason why it was selected for sequencing. The reason a sample was sequenced may provide information about potential biases in sequencing strategy. Provide the purpose of sequencing from the picklist in the template. The reason for sample collection should be indicated in the .purpose of sampling. field.

purpose of sequencing details field
type: Class
subclass of: GENEPIO_0100586
example of usage: Screened for S gene target failure (S dropout)
has curation status: requires discussion
definition: A data field which describes the description of why the sample was sequenced providing specific details.
alternative term: purpose of sequencing details
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: purpose of sequencing details slot
comment: Example Guidance: Provide an expanded description of why the sample was sequenced using pick list. The description may include the importance of the sequences for a particular public health investigation/surveillance activity/research question. Suggested standardized descriptions include: Screened for S gene target failure (S dropout), Screened for mink variants, Screened for B.1.1.7 variant, Screened for B.1.135 variant, Screened for P.1 variant, Screened due to travel history, Screened due to close contact with infected individual, Assessing public health control measures, Determining early introductions and spread, Investigating airline-related exposures, Investigating temporary foreign worker, Investigating remote regions, Investigating health care workers, Investigating schools/universities, Investigating reinfection.

sequencing date field
type: Class
subclass of: GENEPIO_0100632
example of usage: 2021-04-26
has curation status: requires discussion
definition: A date field which describes the date the sample was sequenced.
alternative term: sequencing date
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: sequencing date slot
comment: Example Guidance: Provide the sequencing date in ISO 8601 standard format .YYYY-MM-DD..

library ID field
type: Class
subclass of: GENEPIO_0100631
example of usage: XYZ_123345
has curation status: requires discussion
definition: A data field which describes user-specified identifier for the library prepared for sequencing.
alternative term: library ID
alternative term: library identifier
alternative term: library_ID
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: library ID slot
has exact synonym: library identifier field
has exact synonym: library identifier slot
comment: Example Guidance: The library name should be unique, and can be an autogenerated ID from your LIMS, or modification of the isolate ID.

amplicon size field
type: Class
subclass of: GENEPIO_0100586
example of usage: 300bp
has curation status: requires discussion
definition: A data field which describes the length of the amplicon generated by polymerase chain reaction (PCR) amplification.
alternative term: amplicon size
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: amplicon size slot
comment: Example Guidance: Provide the amplicon size, including the units.

library preparation kit field
type: Class
subclass of: GENEPIO_0100586
example of usage: Nextera XT
has curation status: requires discussion
definition: A data field which describes the name of the library preparation kit used to generate the library being sequenced.
editor note: Some specification definitions may be more specific on the type of library preparation kit used (e.g. DNA).
alternative term: library preparation kit
alternative term: library_preparation_kit
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: library preparation kit slot
comment: Example Guidance: Provide the name of the library preparation kit used.

flow cell barcode field
type: Class
subclass of: GENEPIO_0100586
example of usage: FAB06069
has curation status: requires discussion
definition: A data field which describes the barcode of the flow cell used for sequencing.
alternative term: flow cell barcode
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: flow cell barcode slot
comment: Example Guidance: Provide the barcode of the flow cell used for sequencing the sample.

sequencing instrument field
type: Class
subclass of: GENEPIO_0100586
example of usage: Oxford Nanopore MinION [GENEPIO:0100142]
has curation status: requires discussion
definition: A data field which describes the model of the sequencing instrument used.
alternative term: sequencing instrument
alternative term: sequencing_instrument
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: sequencing instrument slot
comment: Example Guidance: Select the sequencing instrument from the pick list.

sequencing protocol name field
type: Class
subclass of: GENEPIO_0100586
example of usage: 1D_DNA_MinION, ARTIC Network Protocol V3
has curation status: requires discussion
definition: A data field which describes the name and version number of the sequencing protocol used.
alternative term: sequencing protocol name
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: sequencing protocol name slot
comment: Example Guidance: Provide the name and version of the sequencing protocol.

sequencing protocol field
type: Class
subclass of: GENEPIO_0100586
example of usage: Genomes were generated through amplicon sequencing of 1200 bp amplicons with Freed schema primers. Libraries were created using Illumina DNA Prep kits, and sequence data was produced using Miseq Micro v2 (500 cycles) sequencing kits.
has curation status: requires discussion
definition: A data field which describes the protocol used to generate the sequence.
alternative term: sequencing protocol
alternative term: sequencing_protocol
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: sequencing protocol slot
comment: Example Guidance: Provide a free text description of the methods and materials used to generate the sequence. Suggested text, fill in information where indicated.: .Viral sequencing was performed following a tiling amplicon strategy using the <fill in> primer scheme. Sequencing was performed using a <fill in> sequencing instrument. Libraries were prepared using <fill in> library kit. .

sequencing kit number field
type: Class
subclass of: GENEPIO_0100586
example of usage: AB456XYZ789
has curation status: requires discussion
definition: A data field which describes the manufacturer's kit number.
alternative term: sequencing kit number
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: sequencing kit number slot
comment: Example Guidance: Alphanumeric value.

amplicon pcr primer scheme field
type: Class
subclass of: GENEPIO_0100586
example of usage: https://github.com/joshquick/artic-ncov2019/blob/master/primer_schemes/nCoV-2019/V3/nCoV-2019.tsv
has curation status: requires discussion
definition: A data field which describes the specifications of the primers (primer sequences, binding positions, fragment size generated, etc.) used to generate the amplicons to be sequenced.
alternative term: amplicon pcr primer scheme
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: amplicon pcr primer scheme slot
has exact synonym: amplicon polymerase chain reaction primer scheme field
has exact synonym: amplicon polymerase chain reaction primer scheme slot
comment: Example Guidance: Provide the name and version of the primer scheme used to generate the amplicons for sequencing.

bioinformatics and QC metrics field category
type: Class
subclass of: data field category
example of usage: An instance of the "bioinformatics and QC metrics field category" that contains the "dehosting method field".
has curation status: ready for release
definition: A data field category which refers to bioinformatics and quality control (QC) metrics fields.
alternative term: bioinformatics and QC metrics
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: bioinformatics and QC metrics slot category
has exact synonym: bioinformatics and Quality Control metrics field category
has exact synonym: bioinformatics and Quality Control metrics slot category

raw sequence data processing method field
type: Class
subclass of: GENEPIO_0100586
example of usage: Porechop 0.2.3
has curation status: requires discussion
definition: A data field which describes the method used for raw data processing such as removing barcodes, adapter trimming, filtering etc.
alternative term: raw sequence data processing method
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: raw sequence data processing method slot
comment: Example Guidance: Provide the name and version numbers of the software used to process the raw data.

dehosting method field
type: Class
subclass of: GENEPIO_0100586
example of usage: Nanostripper 1.2.3
has curation status: requires discussion
definition: A data field which describes the method used to remove host reads from the pathogen sequence.
alternative term: dehosting method
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: dehosting method slot
comment: Example Guidance: Provide the name and version number of the software used to remove host reads.

consensus sequence name field
type: Class
subclass of: GENEPIO_0100586
example of usage: ncov123assembly3
has curation status: requires discussion
definition: A data field which describes the name of the consensus sequence.
alternative term: consensus sequence name
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: consensus sequence name slot
comment: Example Guidance: Provide the name and version number of the consensus sequence.

consensus sequence filename field
type: Class
subclass of: GENEPIO_0100586
example of usage: pathogenassembly123.fasta
has curation status: requires discussion
definition: A data field which describes the user-defined filename of the FASTA file.
alternative term: assembly filename
alternative term: consensus sequence filename
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: consensus sequence filename slot
comment: Example Guidance: Provide the name and version number of the consensus sequence FASTA file.

consensus sequence filepath field
type: Class
subclass of: GENEPIO_0100586
has curation status: requires discussion
definition: A data field which describes the filepath of the consensus sequence file.
alternative term: consensus sequence filepath
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: consensus sequence filepath slot
comment: Example Guidance: Provide the filepath of the consensus sequence FASTA file.

consensus sequence software name field
type: Class
subclass of: GENEPIO_0100586
example of usage: Ivar
has curation status: requires discussion
definition: A data field which describes the name of the software used to generate the consensus sequence.
alternative term: consensus sequence software name
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: consensus sequence software name slot
comment: Example Guidance: Provide the name of the software used to generate the consensus sequence.

exposure history record
type: Class
subclass of: draft GenEpiO component record
has curation status: IAO_0000428
definition editor: Damion Dooley
comment: An exposure can be narrowed down to a single date, or can be reasoned to exist with a lower and/or upper bound date. A single date exposure has lower and upper bound dates set as the same value.

isolate history record
type: Class
subclass of: draft GenEpiO component record
has curation status: IAO_0000428
definition editor: Damion Dooley

outbreak history record
type: Class
subclass of: draft GenEpiO component record
has curation status: IAO_0000428
definition editor: Damion Dooley
comment: An outbreak date may have an official start, but because it might be ongoing, it may not have an end (yet).

pregnancy history record
type: Class
subclass of: draft GenEpiO component record
has curation status: IAO_0000428
definition editor: Damion Dooley
comment: Needs to cover the various pregnancy events

diagnosis record
type: Class
subclass of: draft GenEpiO component record
has curation status: IAO_0000428
definition editor: Damion Dooley
comment: Issue: a diagnosis is a set of diseases, each of which can be marked primary or secondary "Illness causality" with respect to a particular case? Requires a relation annotation.

consensus sequence software version field
type: Class
subclass of: GENEPIO_0100586
example of usage: 1.3
has curation status: requires discussion
definition: A data field which describes the version of the software used to generate the consensus sequence.
alternative term: consensus sequence software version
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: consensus sequence software version slot
comment: Example Guidance: Provide the version of the software used to generate the consensus sequence.

exposure event record
type: Class
subclass of: draft GenEpiO component record
has curation status: IAO_0000428
definition editor: Damion Dooley

hospitalization event record
type: Class
subclass of: draft GenEpiO component record
has curation status: IAO_0000428
definition editor: Damion Dooley

breadth of coverage value field
type: Class
subclass of: GENEPIO_0100586
example of usage: 95%
has curation status: requires discussion
definition: A data field which describes the percentage of the reference genome covered by the sequenced data, to a prescribed depth.
alternative term: breadth of coverage value
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: breadth of coverage value slot
comment: Example Guidance: Provide value as a percent.

exposure history item
type: Class
subclass of: IAO_0000416
comment: An exposure can be narrowed down to a single date, or can be reasoned to exist with a lower and/or upper bound date. A single date exposure has lower and upper bound dates set as the same value.

depth of coverage value field
type: Class
subclass of: GENEPIO_0100586
example of usage: 400x
has curation status: requires discussion
definition: A data field which describes the average number of reads representing a given nucleotide in the reconstructed sequence.
alternative term: depth of coverage value
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: depth of coverage value slot
comment: Example Guidance: Provide value as a fold of coverage.

depth of coverage threshold field
type: Class
subclass of: GENEPIO_0100586
example of usage: 100x
has curation status: requires discussion
definition: A data field which describes the threshold used as a cut-off for the depth of coverage.
alternative term: depth of coverage threshold
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: depth of coverage threshold slot
comment: Example Guidance: Provide the threshold fold coverage.

r1 fastq filename field
type: Class
subclass of: GENEPIO_0100586
example of usage: ABC123_S1_L001_R1_001.fastq.gz
has curation status: requires discussion
definition: A data field which describes the user-specified filename of the read 1 (r1) FASTQ file.
alternative term: r1 fastq filename
alternative term: r1_fastq_filename
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: r1 fastq filename slot
comment: Example Guidance: Provide the r1 FASTQ filename.

r2 fastq filename field
type: Class
subclass of: GENEPIO_0100586
example of usage: ABC123_S1_L001_R2_001.fastq.gz
has curation status: requires discussion
definition: A data field which describes the user-specified filename of the read 2 (r2) FASTQ file.
alternative term: r2 fastq filename
alternative term: r2_fastq_filename
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: r2 fastq filename slot
comment: Example Guidance: Provide the r2 FASTQ filename.

r1 fastq filepath field
type: Class
subclass of: GENEPIO_0100586
example of usage: /User/Documents/RespLab/Data/ABC123_S1_L001_R1_001.fastq.gz
has curation status: requires discussion
definition: A data field which describes the filepath of the read 1 (r1) FASTQ file.
alternative term: r1 fastq filepath
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: r1 fastq filepath slot
comment: Example Guidance: Provide the filepath of the r1 FASTQ file.

r2 fastq filepath field
type: Class
subclass of: GENEPIO_0100586
example of usage: /User/Documents/RespLab/Data/ABC123_S1_L001_R2_001.fastq.gz
has curation status: requires discussion
definition: A data field which describes the filepath of the read 2 (r2) FASTQ file.
alternative term: r2 fastq filepath
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: r2 fastq filepath slot
comment: Example Guidance: Provide the filepath of the r2 FASTQ file.

fast5 filename field
type: Class
subclass of: GENEPIO_0100586
example of usage: batch1a_sequences.fast5
has curation status: requires discussion
definition: A data field which describes the user-specified filename of the FAST5 file.
alternative term: fast5 filename
alternative term: fast5_filename
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: fast5 filename slot
comment: Example Guidance: Provide the FAST5 filename.

fast5 filepath field
type: Class
subclass of: GENEPIO_0100586
example of usage: /User/Documents/RespLab/Data/batch1a_sequences.fast5
has curation status: requires discussion
definition: A data field which describes the filepath of the FAST5 file.
alternative term: fast5 filepath
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: fast5 filepath slot
comment: Example Guidance: Provide the filepath of the FAST5 file.

number of base pairs sequenced field
type: Class
subclass of: GENEPIO_0100586
example of usage: 387566
has curation status: requires discussion
definition: A data field which describes the number of total base pairs generated by the sequencing process.
alternative term: number of base pairs sequenced
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: number of base pairs sequenced slot
comment: Example Guidance: Provide a numerical value (no need to include units).

consensus genome length field
type: Class
subclass of: GENEPIO_0100586
example of usage: 38677
has curation status: requires discussion
definition: A data field which describes the file size of the assembled genome described as the number of base pairs.
alternative term: consensus genome length
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: consensus genome length slot
comment: Example Guidance: Provide a numerical value (no need to include units).

Ns per 100 kbp field
type: Class
subclass of: GENEPIO_0100586
example of usage: 300
has curation status: requires discussion
definition: A data field which describes the number of N (unidentified nucleotide) symbols present in the consensus fasta sequence, per 100kbp of sequence.
alternative term: Ns per 100 kbp
alternative term: Ns per 100 kilobase pairs
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: Ns per 100 kbp slot
has exact synonym: Ns per 100 kilobase pairs field
has exact synonym: Ns per 100 kilobase pairs slot
has exact synonym: unidentified nucleotides per 100 kbp field
has exact synonym: unidentified nucleotides per 100 kbp slot
comment: Example Guidance: Provide a numerical value (no need to include units).

reference genome accession field
type: Class
subclass of: GENEPIO_0100631
example of usage: NC_045512.2
has curation status: requires discussion
definition: A data field which describes the persistent, unique identifier of a genome database entry.
alternative term: reference genome accession
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: reference genome accession slot
comment: Example Guidance: Provide the accession number of the reference genome.

hospital admission date
type: Class
subclass of: hospitalization history item

exposure event end
type: Class
subclass of: exposure history item
definition: A date-time datum that marks the end of possible human or animal exposure to a pathogen agent, directly or indirectly.
definition editor: Damion Dooley

exposure event start
type: Class
subclass of: exposure history item
definition: A date-time datum that marks the start of a human or animal exposure event to a suspected pathogen agent, directly or indirectly.
definition editor: Damion Dooley
IAO_0000600: This datum is NOT predicted as a function of pathogen and first symptom date.

bioinformatics protocol field
type: Class
subclass of: GENEPIO_0100586
example of usage: https://www.protocols.io/groups/cphln-sarscov2-sequencing-consortium/members
has curation status: requires discussion
definition: A data field which describes the name and version number of the bioinformatics protocol used.
alternative term: bioinformatics protocol
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: bioinformatics protocol slot
comment: Example Guidance: Further details regarding the methods used to process raw data, and/or generate assemblies, and/or generate consensus sequences can be provided in an SOP or protocol. Provide the name and version number of the protocol, or a link if deposited in a protocol repository.

hospitalization history item
type: Class
subclass of: IAO_0000416

isolate history item
type: Class
subclass of: IAO_0000416

outbreak history item
type: Class
subclass of: IAO_0000416
comment: An outbreak date may have an official start, but because it might be ongoing, it may not have an end (yet).

hospital discharge date
type: Class
subclass of: hospitalization history item
subclass of: Restriction
  on property: after
  some values from: hospital admission date

notification date
type: Class
subclass of: outbreak history item
has curation status: IAO_0000428
definition: A notification date is the date that an outbreak is suspected by a laboratory or other agency and is reported per outbreak detection guidelines.
definition editor: Damion Dooley

outbreak date
type: Class
subclass of: outbreak history item
has curation status: IAO_0000428
definition: An outbreak date is on which disease onset appears to have occured
definition editor: Damion Dooley

outbreak over
type: Class
subclass of: outbreak history item
subclass of: Restriction
  on property: after
  some values from: outbreak date
has curation status: IAO_0000428
definition: An outbreak over date is the date on which a disease outbreak appears to have abated
definition editor: Damion Dooley

test history item
type: Class
subclass of: IAO_0000416
has curation status: IAO_0000428

lineage and variant information field category
type: Class
subclass of: data field category
example of usage: An instance of the "lineage and variant information field category" that contains the "lineage/clade name field".
has curation status: ready for release
definition: A data field category which refers to lineage and variant information fields.
alternative term: lineage and variant information
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: lineage and variant information slot category

lab test result date
type: Class
subclass of: test history item
has curation status: IAO_0000428

lineage/clade name field
type: Class
subclass of: GENEPIO_0100586
example of usage: B.1.1.7
has curation status: requires discussion
definition: A data field which describes the name of the lineage or clade.
alternative term: lineage/clade name
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: lineage or clade name field
has exact synonym: lineage or clade name slot
has exact synonym: lineage/clade name slot
comment: Example Guidance: Provide the Pangolin or Nextstrain lineage/clade name.

lineage/clade analysis software name field
type: Class
subclass of: GENEPIO_0100586
example of usage: Pangolin
has curation status: requires discussion
definition: A data field which describe the name of the software used to determine the lineage/clade.
alternative term: lineage/clade analysis software name
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: lineage or clade analysis software name field
has exact synonym: lineage or clade analysis software name slot
has exact synonym: lineage/clade analysis software name slot
comment: Example Guidance: Provide the name of the software used to determine the lineage/clade.

lineage/clade analysis software version field
type: Class
subclass of: GENEPIO_0100586
example of usage: 2.1.10
has curation status: requires discussion
definition: A data field which describes the version of the software used to determine the lineage/clade.
alternative term: lineage/clade analysis software version
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: lineage or clade analysis software version field
has exact synonym: lineage or clade analysis software version slot
has exact synonym: lineage/clade analysis software version slot
comment: Example Guidance: Provide the version of the software used ot determine the lineage/clade.

variant designation field
type: Class
subclass of: GENEPIO_0100586
example of usage: Variant of Concern (VOC) [GENEPIO:0100083]
has curation status: requires discussion
definition: A data field which describes the variant classification of the lineage/clade.
alternative term: variant designation
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: variant designation slot
comment: Example Guidance: If the lineage/clade is considered a Variant of Concern, select Variant of Concern from the pick list. If the lineage/clade contains mutations of concern (mutations that increase transmission, clincal severity, or other epidemiological fa ctors) but it not a global Variant of Concern, select Variant. If the lineage/clade does not contain mutations of concern, leave blank.

variant evidence details field
type: Class
subclass of: GENEPIO_0100586
example of usage: RT-qPCR
example of usage: RT-qPCR TaqPath assay: S gene target failure
has curation status: requires discussion
definition: A data field which describes the evidence used to make the variant determination.
alternative term: variant evidence
alternative term: variant evidence details
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: variant evidence details slot
has exact synonym: variant evidence slot
comment: Example Guidance: List the set of lineage-defining mutations used to make the variant determination. If there are mutations of interest/concern observed in addition to lineage-defining mutations, describe those here.
comment: Example Guidance: Select whether the sample was screened using RT-qPCR or by sequencing from the pick list.
label: variant evidence field

pathogen diagnostic testing field category
type: Class
subclass of: data field category
example of usage: An instance of the "pathogen diagnostic testing field category" that contains the "diagnostic pcr protocol field".
has curation status: ready for release
definition: A data field category which refers to pathogen diagnostic testing information fields.
alternative term: pathogen diagnostic testing
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: pathogen diagnostic testing slot category

contributor acknowledgement field category
type: Class
subclass of: data field category
example of usage: An instance of the "contributor acknowledgement field category" that contains the "authors field".
has curation status: ready for release
definition: A data field category which refers to contributor acknowledgement information fields.
alternative term: contributor acknowledgement
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2021-04-24T00:42:14Z
has exact synonym: contributor acknowledgement slot category

data authors field
type: Class
subclass of: GENEPIO_0100586
example of usage: Tejinder Singh, Fei Hu, Johnny Blogs
has curation status: requires discussion
definition: A data field which describes the names of individuals contributing to the processes of sample collection, sequence generation, analysis, and data submission.
alternative term: authors
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2022-12-22T00:55:53.808Z
has exact synonym: data authors slot
has exact synonym: data contributors fields
has exact synonym: data contributors slot
comment: Example Guidance: Include the first and last names of all individuals that should be attributed, separated by a comma.

DataHarmonizer provenance field
type: Class
subclass of: GENEPIO_0100586
example of usage: DataHarmonizer v1.4.3, PHA4GE v1.0.0
has curation status: requires discussion
definition: A data field which describes the DataHarmonizer software and template version provenance.
alternative term: DataHarmonizer provenance
contributor: https://orcid.org/0000-0002-1107-9135
contributor: https://orcid.org/0000-0002-8844-9165
contributor: https://orcid.org/0000-0002-9578-0788
date: 2022-12-22T00:55:53.808Z
has exact synonym: DataHarmonizer provenance slot
comment: Example Guidance: The current software and template version information will be automatically generated in this field after the user utilizes the .validate. function. This information will be generated regardless as to whether the row is valid of not.

data enumeration
type: Class
subclass of: IAO_0000027
has curation status: IAO_0000428
definition: A data item that is a set of entities, referenced by mention, that don't necessarily have something in common.
definition editor: 0000-0002-8844-9165
definition editor: 0000-0002-9578-0788
date: 2022-01-31T03:45:04Z
comment: While "enumeration" is a "data item" not everything referenced within an enumeration qualifies as a "data item". Not to be confused with "data set" which describes "data item"s of the same type that have something in common.

signs and symptoms
type: Class
subclass of: analytic datum
definition: An analytic datum which describes the observed or detectable signs, and experienced symptomps of an illness, injury, or condition.
definition editor: 0000-0002-9578-0788
definition source: https://en.wikipedia.org/wiki/Signs_and_symptoms
date: 2022-01-31T23:08:50Z
has exact synonym: signs & symptoms

food specimen datum
type: Class
subclass of: specimen datum
has curation status: IAO_0000428
definition: A particular attribute (feature, quality or process history) of a food sample.
definition editor: Damion Dooley
comment: The underlying facets will be supplied from the FoodOn food ontology.

food specimen specification
type: Class
subclass of: data specification
user interface feature: order: FOODON:03411564 # food source FOODON:00002381 # food product by organism FOODON:03311737 # processed food product NCIT:C71898 # brand name
has curation status: IAO_0000428
definition: A food specimen type is a categorization of a food specimen, by the organism it is or came from, or by a class of food products.
definition editor: Damion Dooley

disease cluster notification agency
type: Class
subclass of: OBI_0000245
has curation status: IAO_0000428
definition: An agency that has reported a disease cluster.
definition editor: Damion Dooley

obsolete: NCBI BioProject ID
type: Class
definition: This is a subset of OBI investigation identifier. It pertains only to NCBI Biosample projects
definition editor: Damion Dooley
term replaced by: http://purl.obolibrary.org/obo/OBI_0001628
deprecated: true

exposure group unknown health status count
type: Class
subclass of: STATO_0000047
definition: The count of individuals or animals for which no health status is available on a certain date/time from a group that was likely exposed to a pathogen.
definition editor: Damion Dooley

person role
type: Class
equivalent class: Class
  intersection of: animal role
  intersection of: Restriction
    on property: characteristic of
    some values from: NCBITaxon 9606
subclass of: animal role
subclass of: Restriction
  on property: characteristic of
  some values from: NCBITaxon 9606
has curation status: IAO_0000428
definition: A role which inheres in a person and is realized by the process of being in the context of civilization
definition editor: Damion Dooley

exposed person role
type: Class
subclass of: person role
definition: An exposed person role is the role a person takes on who has been exposed to a pathogen. In serious situations this may call for special treatment, e.g. quarantine.
definition editor: Damion Dooley

obsolete: parent-guardian role
type: Class
subclass of: person role
has obsolescence reason: Redundant with "term replaced by" entity.
term replaced by: GENEPIO_0100269
label: parent-guardian role
deprecated: true

illness causality
type: Class
subclass of: analytic datum
has curation status: IAO_0000428
definition editor: Damion Dooley

pre-existing condition
type: Class
subclass of: illness causality

resolving health trend
type: Class
subclass of: health status trend datum
subclass of: Restriction
  on property: after
  some values from: GENEPIO_0002026
has curation status: IAO_0000428
definition: To restore to the normal state after some pathologic process.
definition editor: Damion Dooley
definition source: Dorland's Illustrated Medical Dictionary, 30th ed.
has exact synonym: improving
has exact synonym: recovering

close interpersonal relationship exposure
type: Class
subclass of: exposure by human contact
definition editor: Damion Dooley

obsolete: household exposure
type: Class
definition editor: Damion Dooley
has obsolescence reason: Found to be redudant with another term, deprecrated in favor of said term.
term replaced by: GENEPIO_0100212
deprecated: true

exposure to individual with diarrhea
type: Class
subclass of: human to human exposure process
definition editor: Damion Dooley

other human exposure
type: Class
subclass of: human to human exposure process
definition editor: Damion Dooley

sexual contact exposure
type: Class
subclass of: exposure by human contact
definition editor: Damion Dooley

exposure via diaper changing (human fecal)
type: Class
subclass of: human to human exposure process
definition editor: Damion Dooley

container identifier
type: Class
subclass of: IAO_0000577

outbreak identifier
type: Class
subclass of: IAO_0000577
database_cross_reference: PulseNet: Outbreak

reference genome size
type: Class
subclass of: sequencing assembly datum
subclass of: STATO_0000047
subclass of: Restriction
  on property: has measurement unit label
  some values from: UO_0000244
subclass of: Restriction
  on property: is about
  some values from: SO_0001505
in_subset: core slim.owl

assembly genome size
type: Class
subclass of: assembly quality control datum
subclass of: Restriction
  on property: has measurement unit label
  some values from: UO_0000244
has curation status: IAO_0000428
definition: The assembly genome size is the sum of all lengths of a sequence assembly's contigs.
definition editor: Damion Dooley
in_subset: core slim.owl
comment: As noted in Quast documentation: " The total assembly size may increase (and in some cases exceeds the genome size) due to contaminants (see Chitsaz et al. (2011)), misassembled contigs, repeats, and hubs that contribute to multiple contigs. "

reference genome identifier
type: Class
subclass of: sequencing assembly datum
subclass of: sequence identifier
subclass of: Restriction
  on property: is about
  some values from: SO_0001505
definition: Identifier for a reference genome (used to build or compare an assembly) that is used in the genome browsers and in the community
definition editor: Damion Dooley
in_subset: core slim.owl

genome size delta ratio
type: Class
subclass of: assembly quality control datum
metadata section: Assembly QC
has curation status: IAO_0000428
definition: The 'genome size delta ratio' is a ratio of the difference between a sample's genome assembly size and the size of a given reference genome, over the reference genome size. The formula: | (reference_genome_size - assembly_genome_size) | / reference_genome_size This yeilds a decimal / percentage ranging from 0 = exact length, to say .1 which is equivalent to a 10% variance. If the ratio is too far from a quality control ratio that depends on the species in question, this indicates a bad assembly or a mis-identified sample.
definition editor: Damion Dooley
in_subset: core slim.owl

genome size delta ratio QC threshold
type: Class
subclass of: assembly quality control datum
metadata section: Assembly QC
has curation status: IAO_0000428
definition: This is the upper acceptable limit of the 'genome size delta ratio' with respect to a particular species. For Salmonella a 0.10 variance in length between an assembly size and a reference genome size may be acceptable. For E-coli a more generous 0.30 or .40 variance should be allowed, given the pathogenic subspecies’ highly dynamic genome.
in_subset: core slim.owl

contig N50 length QC threshold
type: Class
subclass of: contig length
metadata section: Assembly QC
has curation status: http://purl.obolibrary.org/obo/IAO_0000428
definition: The contig N50 length QC threshold is a minimum length threshold that a contig N50 length datum should be above for good QC. A lower length is indicative of assembly problems (insufficient read depth) or a mismatched reference genome.
definition editor: Damion Dooley
in_subset: core slim.owl

contig N99 length QC threshold
type: Class
subclass of: contig length
metadata section: Assembly QC
example of usage: 2000
has curation status: IAO_0000428
definition: The contig N99 length QC threshold is the minimum length that a contig N99 or NG99 length datum can be for satisfactory QC. This threshold avoids having too many gene coding regions prematurely clipped inside short contigs. An assembly having 1% or more of its content in less than 2Kbp chunks is cause for concern. Bacterial genes are generally about 1Kbp in length.
definition editor: Damion Dooley
in_subset: core slim.owl

subject organism (host) taxonomic species
type: Class
subclass of: OBI_0001930
subclass of: Restriction
user interface feature: lookup
example of usage: Homo sapiens
has curation status: IAO_0000428
definition: The species of the host organism from which a specimen (pathogen) organism was obtained. Use the full taxonomic name, eg, "Homo sapiens".
definition editor: Damion Dooley
definition source: GENEPIO_0001835

Axiom
annotated source: subject organism (host) taxonomic species
annotated property: subClassOf
annotated target: Restriction
user interface feature: lookup

assembly quality control datum
type: Class
subclass of: sequencing assembly datum
subclass of: Restriction
  on property: is about
  some values from: SO_0000353
metadata section: Assembly QC
has curation status: IAO_0000428
definition: A single datum having to do with a metric for genomic sequence assembly quality control. A "quality control measurement" can be defined as a measurement that has some norm within a definable context, e.g. for a certain subspecies. It may be a calculated quantity. A "quality control metric" is an upper or lower bound threshold that a measurement is compared to. Surpassing the threshold may indicate an error situation. A "measure" can indicate an amount of activity, consumption, transformation, etc. but doesn't itself convey an over-stepping of bounds in the way that a metric does.
definition editor: Damion Dooley
in_subset: core slim.owl

clinical or host-associated pathogen
type: Class
subclass of: specimen category
subclass of: Restriction
definition editor: Damion Dooley
has_alternative_id: GSCID-BRC:Clinical/host-associated pathogen
has_alternative_id: NCBI:Pathogen.cl

Clinical/host-associated pathogen
type: Axiom
annotated source: clinical or host-associated pathogen
annotated property: subClassOf
annotated target: Restriction

Pathogen.cl
type: Axiom
annotated source: clinical or host-associated pathogen
annotated property: subClassOf
annotated target: Restriction

contig N99
type: Class
subclass of: contig length
metadata section: Assembly QC
has curation status: http://purl.obolibrary.org/obo/IAO_0000428
definition: The N99 length definition is identical to the N50 definition except that the threshold for determining the contigs is 1% of the nucleotides. This contig basepair length can be compared to a minimum threshold to determine if gene annotation (where contigs greater than say 2000bp are necessary) would generally succeed.
definition editor: Damion Dooley
in_subset: core slim.owl

contig count QC threshold
type: Class
subclass of: contig count
metadata section: Assembly QC
has curation status: http://purl.obolibrary.org/obo/IAO_0000428
definition: The upper threshold of contig counts that are acceptable in a genome assembly. This may vary based on the overall genome length and depth of coverage. A large contig count may indicate insufficient read coverage.
definition editor: Damion Dooley

project relevance
type: Class
subclass of: IAO_0000005
has curation status: IAO_0000122
definition: Indicates how the knowledge derived from the project can be applied, and to what field(s).
editor note: Damion Dooley's note: NAIAD GRCID-BRC has Project Relevance map to OBO Foundry Study Design (http://purl.obolibrary.org/obo/OBI_0500000) but this is a bit of a stretch.
definition editor: Damion Dooley
definition source: https://www.niaid.nih.gov/research/dmid-metadata-standards-core-project

agricultural project relevance
type: Class
subclass of: project relevance

medical knowledge relevance
type: Class
subclass of: project relevance

industrial processing relevance
type: Class
subclass of: project relevance

evolution modelling relevance
type: Class
subclass of: project relevance

environmental project relevance
type: Class
subclass of: project relevance

model organism relevance
type: Class
subclass of: project relevance

obsolete: NCBI BioProject model
type: Class
definition: The NCBI BioProject model includes all datums associated with the current NCBI BioProject specification.
definition editor: Damion Dooley
term replaced by: GENEPIO_0001836
deprecated: true

obsolete: NCBI SRA model
type: Class
term replaced by: NCBI SRA meta information standard
deprecated: true

draft NCBI BioSample model - mixed clinical and environmental/food/other
type: Class
subclass of: draft NCBI component model
term source: http://www.ncbi.nlm.nih.gov/biosample/docs/attributes/
term source: http://www.ncbi.nlm.nih.gov/biosample/docs/packages/Pathogen.cl.1.0/
has curation status: IAO_0000428
editor note: Damion Dooley notes: NCBI doesn't quite make the distinction but it may be helpful to distinguish sample submission facilitator vs submitter/repository organization contact? So should we have a BioSample_submission_facilitator field and a BioSample_contact_information field?
definition editor: Damion Dooley
comment: Damion's note: There are a few different kinds of biosample, and required fields depend on the type selected.

monoisolate sample scope
type: Class
subclass of: OBI_0001884
user interface label: monoisolate
has curation status: IAO_0000122
definition: A monoisolate sample scope involves specimens from a single animal, cultured cell-line, inbred population, or possibly a heterogeneous population when a single genome assembly is generated from a pooled sample because multiple individuals are needed to collect enough material and an inbred line is not available; however, this situation is not preferred.
definition editor: Damion Dooley
definition source: https://www.ncbi.nlm.nih.gov/books/NBK54364/
NIAID GSCID-BRC alternative term: monoisolate

multiisolate sample scope
type: Class
subclass of: OBI_0001884
user interface label: multiisolate
has curation status: IAO_0000122
definition: A multiisolate sample scope contains multiple individuals that represent distinct specimen collections, a population (representative of a species).
definition editor: Damion Dooley
definition source: https://www.ncbi.nlm.nih.gov/books/NBK54364/
IAO_0000600: This is often used for variation or phenotype and genotype studies. This should not be used when multiple genomes will be annotated. Eventually, multiple locus_tag prefixes will be able to be assigned to a single multiisolate genome sequencing project, but currently only a single prefix can be registered per project. Therefore, individual monoisolate projects need to be registered when more than one genome will be annotated.

multispecies sample scope
type: Class
subclass of: OBI_0001884
user interface label: multispecies
has curation status: IAO_0000122
definition: A multi-species sample scope involves a sample representing multiple species.
definition editor: Damion Dooley
definition source: https://www.ncbi.nlm.nih.gov/books/NBK54364/

environment sample scope
type: Class
subclass of: OBI_0001884
user interface label: environment
has curation status: IAO_0000122
definition: An environment sample scope indicates that the species content of the sample is not known. Generally, nucleic acid is directly isolated from an environmental sample for analysis. This is used for metagenome studies.
definition editor: Damion Dooley
definition source: https://www.ncbi.nlm.nih.gov/books/NBK54364/

synthetic sample scope
type: Class
subclass of: OBI_0001884
has curation status: IAO_0000122
definition: A synthetic sample scope involves a sample synthesized in a laboratory.
definition editor: Damion Dooley
definition source: https://www.ncbi.nlm.nih.gov/books/NBK54364/

single cell
type: Class
subclass of: OBI_0001884
has curation status: IAO_0000428
definition editor: Damion Dooley

other project objective
type: Class
subclass of: OBI_0001892
user interface label: other
has curation status: IAO_0000122
definition: Other project objective: specify an objective not listed above
definition editor: Damion Dooley
definition source: https://www.ncbi.nlm.nih.gov/books/NBK54364/

environmental, food or other pathogen
type: Class
subclass of: specimen category
subclass of: Restriction
definition editor: Damion Dooley
has_alternative_id: GSCID-BRC:environmental/food/other
has_alternative_id: NCBI:Pathogen.env

environmental/food/other
type: Axiom
annotated source: environmental, food or other pathogen
annotated property: subClassOf
annotated target: Restriction

Pathogen.env
type: Axiom
annotated source: environmental, food or other pathogen
annotated property: subClassOf
annotated target: Restriction

whole genomic data capture
type: Class
subclass of: OBI_0001899
user interface label: whole
has curation status: IAO_0000122
definition: Whole: the project makes use of the whole sample material (most common case). Use this for whole genome sequencing studies, transcriptome studies that are not targeting specific loci, epigenetic studies of a genome, and metagenomes or unbiased transcriptome studies of metagenomes.
definition editor: Damion Dooley
definition source: https://www.ncbi.nlm.nih.gov/books/NBK54364/

raw sequence read objective
type: Class
subclass of: OBI_0001892
user interface label: raw sequence reads
has curation status: IAO_0000122
definition: A raw sequence reads project objective has the goal of submission of raw reads to SRA or Trace repositories
definition editor: Damion Dooley
definition source: https://www.ncbi.nlm.nih.gov/books/NBK54364/

sequence project objective
type: Class
subclass of: OBI_0001892
user interface label: sequence
has curation status: IAO_0000122
definition: A sequence project objective has a goal of submission of sequence data to standard archival sequence databases (yielding accession.version identifiers; e.g., whole genome shotgun, cDNA sequences, transcript shotgun assemblies)
definition editor: Damion Dooley
definition source: https://www.ncbi.nlm.nih.gov/books/NBK54364/

analysis objective
type: Class
subclass of: OBI_0001892
user interface label: analysis
has curation status: IAO_0000122
definition: An "analysis project objective" indicates there was an other analysis not otherwise indicated, includes submission of BAM files.
editor note: This defn. could be a negation of the "not otherwise indicated".
definition editor: Damion Dooley
definition source: https://www.ncbi.nlm.nih.gov/books/NBK54364/

assembly objective
type: Class
subclass of: OBI_0001892
user interface label: assembly
has curation status: IAO_0000122
definition: Submission of genome assembly (AGP data)
definition editor: Damion Dooley
definition source: https://www.ncbi.nlm.nih.gov/books/NBK54364/

sequence annotation objective
type: Class
subclass of: OBI_0001892
user interface label: annotation
has curation status: IAO_0000122
definition: Sequence annotation data
definition editor: Damion Dooley
definition source: https://www.ncbi.nlm.nih.gov/books/NBK54364/

sequence variation project objective
type: Class
subclass of: OBI_0001892
user interface label: sequence variation
has curation status: IAO_0000122
definition: Variation: identification of sequence variation data for submission to dbSNP or dbVAR
definition editor: Damion Dooley
definition source: https://www.ncbi.nlm.nih.gov/books/NBK54364/

epigenetic markers objective
type: Class
subclass of: OBI_0001892
user interface label: epigenetic markers
has curation status: IAO_0000122
definition: DNA methylation, histone modification, chromatin accessibility datasets
definition editor: Damion Dooley
definition source: https://www.ncbi.nlm.nih.gov/books/NBK54364/

transcript or protein expression objective
type: Class
subclass of: OBI_0001892
user interface label: expression
has curation status: IAO_0000122
definition: Expression: assays of transcript or protein existence or abundance
definition editor: Damion Dooley
definition source: https://www.ncbi.nlm.nih.gov/books/NBK54364/

mapping objective
type: Class
subclass of: OBI_0001892
user interface label: maps
has curation status: IAO_0000122
definition: Maps: non-sequence based map data; e.g., genetic, radiation hybrid, cytogenetic, etc.
definition editor: Damion Dooley
definition source: https://www.ncbi.nlm.nih.gov/books/NBK54364/

phenotypic observation data from specimen
type: Class
subclass of: OBI_0001882
has curation status: IAO_0000123
definition: Phenotypic descriptive data.
definition editor: Damion Dooley
definition source: https://www.ncbi.nlm.nih.gov/books/NBK54364/

sequencing project method
type: Class
subclass of: OBI_0001896
user interface label: select sequence if any sequence data is generated from this project.
user interface label: sequencing
has curation status: IAO_0000122
definition editor: Damion Dooley
definition source: https://www.ncbi.nlm.nih.gov/books/NBK54364/

array project method
type: Class
subclass of: OBI_0001896
user interface label: array
has curation status: IAO_0000122
definition: Select Array if that is the primary method and no sequence data is submitted
definition editor: Damion Dooley
definition source: https://www.ncbi.nlm.nih.gov/books/NBK54364/

mass spectrometry project method
type: Class
subclass of: OBI_0001896
user interface label: mass spectrometry
has curation status: IAO_0000122
definition: Select Mass Spectrometry if that is the primary method
definition editor: Damion Dooley
definition source: https://www.ncbi.nlm.nih.gov/books/NBK54364/

contact specification - person
type: Class
subclass of: contact specification
user interface feature: order: NCIT:C40974 # first name NCIT:C40975 # last name NCIT:C42775 # email address GENEPIO:0001756 # phone

investigation datum
type: Class
subclass of: IAO_0000109
definition: A categorical investigation datum is a datum pertaining to some entity examined for scientific research or diagnostic purposes and which has a scope that is broader than one of the clinical, environmental or epidemiological domains.
definition editor: Damion Dooley

commensal role
type: Class
subclass of: isolate organism role
definition: An organism and its host share physical space but no evidence exists to determine if one benefits from this arrangement.

draft isolate details model
type: Class
subclass of: data specification

subject age
type: Class
subclass of: OBI_0001169
has curation status: IAO_0000428
definition: An age measurement datum which is the age since birth of a given organism that is involved in an investigation or study at a given time.
definition editor: Damion Dooley

draft NCBI component model
type: Class
subclass of: draft data standard
has curation status: IAO_0000428

draft IRIDA BioSample model
type: Class
subclass of: GENEPIO_0001829

draft GenEpiO epidemiology case record
type: Class
subclass of: draft GenEpiO component record
subclass of: Restriction
  on property: is about
  some values from: IDO_0000531

subject description
type: Class
subclass of: SIO_000136
subclass of: Restriction
definition: A subject description is a field containing additional information about an organism (related to an investigation, study and/or specimen) that is not included in other defined vocabulary fields.
definition editor: Damion Dooley
definition source: http://purl.obolibrary.org/obo/GENEPIO_0001835

host description
type: Axiom
annotated source: subject description
annotated property: subClassOf
annotated target: Restriction

host profile or identifers
type: Class
subclass of: SIO_000136
term source: NCBI BioSample
definition: The host profile or identifiers text is the "identification or description of the specific individual from which this sample was obtained".
definition editor: Damion Dooley
database_cross_reference: NCBI BioSample: isolate

subject identifier
type: Class
subclass of: OBI_0001141
has curation status: IAO_0000428
definition: A subject identifier is an identifier of a subject organism within the context of a particular investigation, study, or specimen extraction event.
definition editor: Damion Dooley
comment: This varies in its type (numeric or string) and its central repository depending on its context (use in a particular application/instance). Note: GSCID-BRC specification states " 'Host' is not the preferred term since some specimens may lack any detectable pathogen". In other words, a person would technically (logically) only have a host identifier AFTER they have been diagnosed as having a pathogen. A health care personal identifier, or a case identifier would be better than a more ephemeral "host id"

subject disease
type: Class
subclass of: disease
subclass of: Restriction
  on property: characteristic of
  some values from: GENEPIO_0002077
has curation status: IAO_0000428
definition: A name of disease in a subject that is related to a given investigation, study and/or specimen.
definition editor: Damion Dooley
definition source: NIAID GSCID-BRC metadata working group
comment: Controlled vocabulary. Human specimen source: https://bioportal.bioontology.org/ontologies/DOID or https://www.ncbi.nlm.nih.gov/mesh/1000067

missing
type: Class
subclass of: GENEPIO_0001850
term source: INSDC term (top level)
definition: A categorical choice recorded when a measurement value was known to be recorded in the past but the observed value cannot be located or retrieved for some reason.
definition source: missing-values.html
database_cross_reference: INSDC standard
database_cross_reference: NCBI Biosample: missing

not applicable
type: Class
subclass of: GENEPIO_0001850
term source: INSDC term (top level)
example of usage: 'not applicable' is an appropriate value for the measure of femur length for a patient with a missing limb
has curation status: IAO_0000428
definition: A categorical choice recorded when a measurable datum does not apply to a given context.
definition editor: Damion Dooley
definition source: missing-values.html
database_cross_reference: INSDC standard
database_cross_reference: GENEPIO_0001835

not collected
type: Class
subclass of: missing
term source: INSDC term (lower level)
definition: A categorical choice recorded when a datum was not measured with respect to some entity during some process.
definition source: missing-values.html
database_cross_reference: INSDC standard
database_cross_reference: NCBI Biosample: not collected

draft isolate identifier model
type: Class
subclass of: data specification

draft GenEpiO isolate testing model
type: Class
subclass of: draft GenEpiO component record
has curation status: IAO_0000428

draft NCBI isolate source location model
type: Class
subclass of: draft NCBI component model
has curation status: IAO_0000428

draft GenEpiO isolate environment model
type: Class
subclass of: draft GenEpiO component record

subject disease stage
type: Class
subclass of: GENEPIO_0002018
definition: A subject disease stage is a measure of the acuteness of a subject organism's diagnosed disease, if any, at a given time in an investigation, study or specimen extraction event.
definition editor: Damion Dooley
definition source: http://purl.obolibrary.org/obo/GENEPIO_0001835

environmental datum
type: Class
subclass of: IAO_0000109

temperature of sample
type: Class
subclass of: environmental datum
subclass of: Restriction
  on property: is about
  some values from: PATO_0000146

de-novo assembly
type: Class
subclass of: assembly method
disjoint with: GENEPIO_0002028

obsolete: sample body source
type: Class
has obsolescence reason: IAO_0000227
term replaced by: subject anatomical site
deprecated: true

contig length QC threshold
type: Class
subclass of: contig length
editor preferred label: contig pre-analysis minimum length QC threshold
has curation status: IAO_0000123
definition: A 'contig length QC threshold' is an integer setting which can be applied by an algorithm to an array of assembly and annotation contig lengths to remove (filter out) all items less than the threshold value. The reduced array is used for calculation of statistics.
definition editor: Damion Dooley
definition source: http://quast.bioinf.spbau.ru/manual.html
comment: QUAST specifies which of its report stats are affected by the "--min-contig" minimum contig length parameter.

contig NG50
type: Class
subclass of: contig length
has curation status: IAO_0000428
definition: The NG50 length is the same as the N50 length except that the length of the reference genome is used in the calculation rather than the assembly genome size.
definition editor: Damion Dooley
comment: "Note that N50 is calculated in the context of the assembly size rather than the genome size. Therefore, comparisons of N50 values derived from assemblies of significantly different lengths are usually not informative, even if for the same genome. To address this, the authors of the Assemblathon competition derived a new measure called NG50. The NG50 statistic is the same as N50 except that it is 50% of the known or estimated genome size that must be of the NG50 length or longer. This allows for meaningful comparisons between different assemblies. In the typical case that the assembly size is not more than the genome size, the NG50 statistic will not be more than the N50 statistic." - wikipedia

contig length
type: Class
subclass of: assembly quality control datum
subclass of: Restriction
  on property: is about
  some values from: SO_0000149
has curation status: IAO_0000123
definition: A contig length is the count of base pairs in a given sequence assembly contig.
definition editor: Damion Dooley

contig L50
type: Class
subclass of: contig count
metadata section: Assembly QC
has curation status: http://purl.obolibrary.org/obo/IAO_0000428
definition: An assembly quality control datum which is defined as number of contigs equal to or longer than the contig N50, when the assembly itself is factored into the calculation.
definition editor: Damion Dooley
definition source: QUAST manual

contig LG99
type: Class
subclass of: contig count
metadata section: Assembly QC
has curation status: http://purl.obolibrary.org/obo/IAO_0000428
definition: The LG99 count is like the L99 count except that the length of the reference genome is used in the calculation rather than the sum of assembly contig lengths.
definition editor: Damion Dooley

obsolete: specimen from subject datum
type: Class
has curation status: IAO_0000428
definition: An organism isolate datum is any datum pertaining to an isolate organism
definition editor: Damion Dooley
deprecated: true

animal body product
type: Class
subclass of: subject body product
subclass of: Restriction
  on property: produced by
  some values from: OBI_0100026
has curation status: IAO_0000428
definition: A product of an animal, as in blood, feces, sputum, etc. that has no particular anatomical site
definition editor: Damion Dooley

obsolete: specimen source material category
type: Class
definition: This is the scientific role or category that the subject organism or material has with respect to an investigation.
definition editor: Damion Dooley
term replaced by: specimen source material category
deprecated: true

draft GenEpiO general information record
type: Class
subclass of: draft GenEpiO component record

antigenic formula
type: Class
subclass of: test specification
subclass of: Restriction
  on property: is about
  some values from: antigen
subclass of: Restriction
  on property: is about
  some values from: NCIT C53471
definition: An antigenic formula is a string composed of codes representing categorized results of tests performed on various viral, bacterial or immune cell surface antigens.
definition editor: Damion Dooley

specimen organism taxonomy (species)
type: Class
subclass of: OBI_0001930
subclass of: Restriction
  on property: specifies value of
  some values from: Class
    union of: NCBITaxon_10239
    union of: NCBITaxon 2
    union of: NCBITaxon 2157
    union of: NCBITaxon 2759
user interface feature: lookup
has curation status: IAO_0000428
definition: This is the taxonomic species descriptor of a specimen isolate (an organism found within a specimen.)
definition editor: Damion Dooley

identifier model
type: Class
subclass of: draft GenEpiO component record
has curation status: IAO_0000428
definition: An identifier moe3l indicates an identifier, the organization it has been issued by, and the status of the identifier - whether it is a primary one, active or archaic.
definition editor: Damion Dooley

curator organization name
type: Class
subclass of: investigation datum
user interface feature: help:This should be populated with a selection from INSDC.org controlled vocabulary for providers: ftp://ftp.ncbi.nlm.nih.gov/pub/taxonomy/coll_dump.txt
has curation status: IAO_0000428
definition: The curator organization name is the name of an organization that manages a given repository of entities (samples, isolates, sequences ...)
definition editor: Damion Dooley

Agriculture and Agri-Food Canada
type: Class
subclass of: OBI_0001893
database_cross_reference: INSDC:institution_code:BRS
database_cross_reference: IRIDA:ACK

isolate identifier
type: Class
subclass of: IAO_0000577
has curation status: IAO_0000428
definition: An isolate identifier is an identifier assigned to a given isolate by a particular agency that is handling or storing it.
definition editor: Damion Dooley

identifier status
type: Class
subclass of: investigation datum
has curation status: IAO_0000428
definition: An identifier status describes the principle role of an identifier assigned to an entity by its curator or handler. An entity may have a number of identifiers assigned to it over time. An identifier may be phased-out as can happen when its content is transferred to another curator.
definition editor: Damion Dooley

data protection role
type: Class
subclass of: role
term source: core slim.owl
has curation status: IAO_0000428
definition: A data protection role is a role (or user permission) that a user has with respect to particular data.
editor note: A data server may be able to provide a protected(modified) dataset with metadata indicating what parts have a protection role with respect to the user requesting this information. A data protection role would be inherited from a user's relation to an entitiy to the entity's components or subclasses.
definition editor: Damion Dooley

original submission
type: Class
subclass of: identifier status
has curation status: IAO_0000428
definition: An identifier used in the initial submission of content to a repository.

NCBI Contributing organization / project
type: Class
subclass of: organization identifier
has curation status: IAO_0000428
editor note: This was created to help define a contributing organization to a repository. However this still needs organizing. The "collected_by" field is free text but contact name AND organization could be associated with this in controlled vocabulary.

food - liquid
type: Class
subclass of: food specimen

draft NCBI BioSample identifier model
type: Class
subclass of: draft NCBI component model
has curation status: IAO_0000428

INSDC institution code
type: Class
subclass of: organization identifier
has curation status: IAO_0000428
definition: An INSDC institution code is an identifier of an organization from a list of sequence repository organizations managed by INSDC.
definition editor: Damion Dooley
definition source: http://www.insdc.org/controlled-vocabulary-culturecollection-qualifier

draft IRIDA epidemiological case model
type: Class
subclass of: GENEPIO_0001829

previous (archaic) identifier
type: Class
subclass of: identifier status
has curation status: IAO_0000428
definition: An identifier that had been used previously but is no longer promoted.
definition editor: Damion Dooley

geographic location datum
type: Class
subclass of: IAO_0000109
has curation status: IAO_0000428
definition: A geographical location datum is a datum that refers to a real, hypothesized or fanciful spatial location
definition editor: Damion Dooley

obsolete: categorical tree specification
type: Class
definition: A categorical tree specification datum is a categorical value specification which takes its value from the ontology URI identifier of any one of its subclass items; these may be organized in a hierarchy.
definition editor: Damion Dooley
term replaced by: http://purl.obolibrary.org/obo/OBI_0001930
comment: A categorical tree specification datum may have its own URI identifier as its value. This could be interpreted to mean that the datum was recorded but that no particular categorical subclass distinction was observed. This in effect makes the datum act as a boolean variable.
deprecated: true

latitude and longitude coordinate (ISO 6709)
type: Class
subclass of: draft NCBI component model
has curation status: IAO_0000428
definition editor: Damion Dooley
comment: A geographic coordinate entity composed of both latitude and longitude components.

draft NCBI BioSample geo_loc_name model
type: Class
subclass of: draft NCBI component model
subclass of: Restriction
  on property: is about
  some values from: OBI_0100051
user interface feature: order: NCIT:C25464 # country ENVO:00000005 # state / province etc.
has curation status: IAO_0000428
definition: Geographical origin of the sample; use the appropriate name from this list http://www.insdc.org/documents/country-qualifier-vocabulary. Use a colon to separate the country or ocean from more detailed information about the location, eg "Canada: Vancouver" or "Germany: halfway down Zugspitze, Alps"
definition editor: Damion Dooley

draft GenEpiO isolate sequencing model
type: Class
subclass of: draft GenEpiO component record

case identifier
type: Class
subclass of: IAO_0000577
definition: A case ID is a unique identifier associated with a particular episode of care for an individual or animal.
definition editor: Damion Dooley

neuter
type: Class
subclass of: PATO_0001894
disjoint with: PATO_0000383
disjoint with: PATO_0000384
definition: An animal that has had a substantial part of its reproductive organs removed surgically.
definition editor: Damion Dooley
database_cross_reference: NCBI BioSample: neuter
comment: Not a PATO phenotypic sex catigorical value.

pooled male and female
type: Class
equivalent class: Class
  union of: PATO_0000383
  union of: PATO_0000384
subclass of: PATO_0001894
term source: NCBI BioSample
definition: A phenotypic sex quality 'pooled male and female' is a categorical value used when the male and female categories or levels of a factor are combined. If used to describe a single organism, then the organism will be one or the other.
editor note: Not a PATO phenotypic sex catigorical value.
definition editor: Damion Dooley
database_cross_reference: NCBI BioSample: 'pooled male and female'

in process
type: Class
subclass of: missing
has curation status: IAO_0000428
definition: A categorical choice recorded while the data for a given measurable datum has not finished being collected, is awaiting a conclusion, or has not yet been communicated.
definition editor: Damion Dooley
has exact synonym: undetermined

swimming / wading
type: Class
subclass of: human water activity

infection detail datum
type: Class
subclass of: patient as host datum
has curation status: IAO_0000428
definition editor: Damion Dooley
comment: NECESSARY? : What details are categorical and what are freehand? This item was originally too broad; moved sub-items to Treatment.

antibiotics required
type: Class
subclass of: infection detail datum
has curation status: IAO_0000428
editor note: This is problematic - its not clear if this is reporting that antibiotics were administered, or whether they are recommended as a result of diagnosis.
definition editor: Damion Dooley

INSDC standard
type: Class
subclass of: NCIT C103180
has curation status: IAO_0000120
definition: The International Nucleotide Sequence Database Collaboration (INSDC) is a long-standing foundational initiative that operates between DDBJ, EMBL-EBI and NCBI. INSDC covers the spectrum of data raw reads, though alignments and assemblies to functional annotation, enriched with contextual information relating to samples and experimental configurations.
definition editor: Damion Dooley
alternative term: International Nucleotide Database Collaboration standard
database_cross_reference: INSDC

outcome of pregnancy associated with illness
type: Class
subclass of: awaiting ontology review
has curation status: IAO_0000428
definition editor: Damion Dooley

not provided
type: Class
subclass of: missing
term source: INSDC term (lower level)
definition: A categorical choice indicating that information of an expected format was not given a value may be given at the later stage.
definition source: missing-values.html
database_cross_reference: INSDC standard

stable health status
type: Class
subclass of: GENEPIO_0002024
subclass of: Restriction
  on property: after
  some values from: GENEPIO_0001842
subclass of: Restriction
  on property: before
  some values from: GENEPIO_0001841
has curation status: IAO_0000428
definition editor: Damion Dooley

induced abortion
type: Class
subclass of: outcome of pregnancy associated with illness

live birth
type: Class
subclass of: outcome of pregnancy associated with illness
has curation status: IAO_0000428

obsolete: gestation duration (weeks)
type: Class
definition editor: Damion Dooley
term replaced by: http://purl.obolibrary.org/obo/VT_0002292
deprecated: true

date of pregnancy outcome
type: Class
subclass of: pregnancy history item
subclass of: Restriction
  on property: after
  some values from: date of conception

contact specification - physician
type: Class
subclass of: contact specification - person
subclass of: Restriction
  on property: is about
  some values from: NCIT C25741
subclass of: Restriction
  on property: has component
  some values from: contact specification - address
has curation status: IAO_0000428

obsolete: matrix - solid
type: Class
deprecated: true

contact specification - parent/guardian
type: Class
subclass of: contact specification - person
subclass of: Restriction
  on property: is about
  some values from: obsolete: parent-guardian role
has curation status: IAO_0000428

contact specification - patient
type: Class
subclass of: contact specification - person
subclass of: Restriction
  on property: is about
  some values from: OBI_0000093
subclass of: Restriction
  on property: has component
  some values from: contact specification - address
has curation status: IAO_0000428

draft GenEpiO case epidemiology record
type: Class
subclass of: draft GenEpiO component record

contact specification - address
type: Class
subclass of: contact specification
user interface feature: order: NCIT:C25464 # Country ENVO:00000005 # major administrative subdivision aka state/province/territory/region (via GenEpiO -> GAZ ) NCIT:C80234 # Municipality (via GenEpiO -> GAZ cities) NCIT:C25690 # Street Address NCIT:C25621 # postal code
has curation status: IAO_0000428
definition: The address component of a contact specification.

obsolete: draft IRIDA model
type: Class
has curation status: IAO_0000428
term replaced by: GENEPIO_0001829
deprecated: true

laboratory sequencing datum
type: Class
subclass of: IAO_0000027
has curation status: IAO_0000428
definition: A datum related to the sequencing assay process applied to an isolate.
definition editor: Damion Dooley

host illness associated with
type: Class
subclass of: awaiting ontology review
has curation status: IAO_0000428
definition editor: Damion Dooley

draft subject demographic specification
type: Class
subclass of: draft GenEpiO component record

E. coli K antigen specification
type: Class
subclass of: GENEPIO_0002468
subclass of: Restriction
  on property: specifies value of
  some values from: K antigen
subclass of: Restriction
  on property: has specified value
  some values from: Datatype
    on datatype: string

other antigen specification
type: Class
subclass of: GENEPIO_0002468
subclass of: Restriction
  on property: specifies value of
  some values from: antigen
subclass of: Restriction
  on property: has specified value
  qualified cardinality: 1
  on data range: Datatype
    on datatype: string
    with restrictions:
      max length: 6

E. coli serotype specification
type: Class
subclass of: serotype specification
has curation status: IAO_0000428

Salmonella serovar specification
type: Class
subclass of: serotype specification
has curation status: IAO_0000428
comment: Damion's note: This will be converted to a categorical tree specification list of serovars by name or id asap.

test specification
type: Class
subclass of: draft GenEpiO component record
has curation status: IAO_0000428
definition: A lab test specification indicates the inputs and outputs (results / conclusions) of a test.
definition editor: Damion Dooley

listeria antigen
type: Class
subclass of: OBI_0001933
subclass of: Restriction
  on property: specifies value of
  some values from: antigen
subclass of: Restriction
  on property: has specified value
  some values from: Datatype
    on datatype: string
    with restrictions:
      pattern: (1/2|1/2a|1/2b|1/2c|3a|3b|3c|4a|4ab|4b|4c|4d|4e|1|7)

obsolete: matrix - fluid
type: Class
deprecated: true

listeria serotype 1/2a
type: Class
subclass of: listeria antigen

listeria serotype 1/2b
type: Class
subclass of: listeria antigen

listeria serotype 1/2c
type: Class
subclass of: listeria antigen

listeria serotype 1/2
type: Class
subclass of: listeria antigen

listeria serotype 3a
type: Class
subclass of: listeria antigen

listeria serotype 3b
type: Class
subclass of: listeria antigen

listeria serotype 4a
type: Class
subclass of: listeria antigen

listeria serotype 4b
type: Class
subclass of: listeria antigen

listeria serotype 4c
type: Class
subclass of: listeria antigen

listeria serotype 4d
type: Class
subclass of: listeria antigen

listeria serotype 4e
type: Class
subclass of: listeria antigen

non-monocytogenes listeria antigen
type: Class
subclass of: listeria antigen

listeria serotype 3c
type: Class
subclass of: listeria antigen

textual test result
type: Class
subclass of: IAO_0000300

obsolete: draft GenEpiO BioProject standard
type: Class
definition: This is an organizational category for grouping parameters relevant to biomedical research projects.
definition editor: Damion Dooley
has obsolescence reason: IAO_0000103
deprecated: true

NCBI BioSample collection code
type: Class
subclass of: collection identifier
definition editor: Damion Dooley
database_cross_reference: NCBI BioSample: collection_code

draft NCBI BioSample host model
type: Class
subclass of: draft NCBI component model
subclass of: Restriction
  on property: is about
  some values from: IDO_0000531
has curation status: IAO_0000428

food - solid
type: Class
subclass of: food specimen

lab test datum
type: Class
subclass of: IAO_0000027

Xbal
type: Class
subclass of: primary enzyme (LMAAI)

Ascl
type: Class
subclass of: primary enzyme (LMAAI)

Smal
type: Class
subclass of: primary enzyme (LMAAI)

Blnl
type: Class
subclass of: secondary enzyme (LMACI)

Apal
type: Class
subclass of: secondary enzyme (LMACI)

Kpnl
type: Class
subclass of: secondary enzyme (LMACI)

subgroup
type: Class
subclass of: test specification
has curation status: IAO_0000122
definition: Taxonomy below subspecies; sometimes used in viruses to denote subgroups taken from a single isolate.
definition editor: Damion Dooley
definition source: NCBI Biosample

viral subtype
type: Class
subclass of: test specification
user interface feature: help:This is an optional additional subtype classification as per organism convention
has curation status: IAO_0000428
definition: A viral subtype is a classification name for a virus according to some protocol.
definition editor: Damion Dooley
definition source: NCBI BioSample

serotype specification
type: Class
subclass of: test specification
subclass of: Restriction
  on property: has component
  max qualified cardinality: 1
  on class: E. coli serotype specification
subclass of: Restriction
  on property: has component
  max qualified cardinality: 1
  on class: Salmonella serovar specification
has curation status: IAO_0000428

phage type specification
type: Class
subclass of: test specification
term source: IRIDA
has curation status: IAO_0000428
definition: An integer and character referring to a pattern of opaque or confluent lysis caused by a panel of bacteriophage infections e.g. 14a.
definition editor: Damion Dooley
database_cross_reference: SNOMED: http://www.snomedbrowser.com/Codes/Details/272405002

obsolete: swab - food contact surface
type: Class
has obsolescence reason: IAO_0000229
deprecated: true

NCBI culture collection
type: Class
subclass of: culture identifier
example of usage: ATCC:26370
definition: An NCBI culture collection is a composite identifier containing “institution code:collection code”.
IAO_0000600: Annotation with a culture_collection qualifier implies that the sequence was obtained from a sample retrieved (by the submitter or a collaborator) from the indicated culture collection, or that the sequence was obtained from a sample that was deposited (by the submitter or a collaborator) in the indicated culture collection. See the description for the proper format and list of allowed institutes, http://www.insdc.org/controlled-vocabulary-culturecollection-qualifier.

NCBI specimen voucher
type: Class
subclass of: OBI_0001616
example of usage: UAM:Mamm:52179
definition: The NCBI specimen voucher is an identifier composed of “institution code:collection code:specimen id” parts. In addition to a specimen identifier, it includes an institution-code (and optional collection-code) taken from a controlled vocabulary maintained by the INSDC that denotes the museum or herbarium collection where the specimen resides.
database_cross_reference: INSDC:specimen_voucher

culture identifier
type: Class
subclass of: IAO_0000577

subject organism common name
type: Class
subclass of: NCIT C42614
subclass of: Restriction
  on property: denotes
  some values from: OBI_0100026
example of usage: human; dog; horse
definition: The natural language (non-taxonomic) name of the type of organism (human or animal) that is the subject of a given investigation, study and/or specimen.
editor note: Damion Dooley's note: as of 2017 this is a problematic field for NCBI Biosample because it is slotted into "host" field, yet field is listed as "host common name" which does not fit with requirement that scientific name be provided.
definition editor: Person: Damion Dooley

temperature of air - average daily
type: Class
subclass of: environmental datum
subclass of: Restriction
  on property: is about
  some values from: air
subclass of: Restriction
  on property: is about
  some values from: PATO_0000146

obsolete: swab - inanimate object surface
type: Class
has obsolescence reason: IAO_0000229
deprecated: true

obsolete: swab - meat
type: Class
has obsolescence reason: IAO_0000229
deprecated: true

obsolete: swab - rectal swab
type: Class
has obsolescence reason: IAO_0000229
deprecated: true

obsolete: swab - tissue
type: Class
has obsolescence reason: IAO_0000229
deprecated: true

unknown source
type: Class
subclass of: matrix

human clinical specimen
type: Class
subclass of: matrix
subclass of: specimen source material category
alternative term: patient sample

obsolete: environmental (swab or sampling)
type: Class
editor note: "environment (swab or sampling)" is a specific response for NCBI BioSample that could be mapped or unified with "environment sample" used elsewhere in GenEpiO
definition editor: Damion Dooley
term replaced by: environmental specimen
deprecated: true

avian - wild
type: Class
subclass of: animal specimen

avian - domesticated
type: Class
subclass of: animal specimen

human clinical specimen - invasive
type: Class
subclass of: human clinical specimen

pH measurement
type: Class
subclass of: environmental datum
definition: In chemistry, pH is a numeric scale used to specify the acidity or basicity(alkalinity) of an aqueous solution
definition editor: Damion Dooley
definition source: Wikipedia
comment: Normally falls within the bounds of 0 - 14

precipitation
type: Class
subclass of: environmental datum

assembly and annotation project objective
type: Class
subclass of: sequencing assembly datum
has curation status: IAO_0000428
definition: The assembly and annotation objective is the set of objectives that assembly and annotation techniques (including instruments and software platforms) applied to a sample are meant to satisfy. This impacts on the quality control thresholds applied to the sequencing project.
definition editor: Damion Dooley

line list row record
type: Class
subclass of: draft GenEpiO component record
has curation status: IAO_0000428
definition editor: Damion Dooley

draft GenEpiO component record
type: Class
subclass of: draft data standard
has curation status: IAO_0000428
definition: This class contains components under development for fulfilling GenEpiO and other standard data specifications. Components are relevant to epidemiological, laboratory, clinical or environmental pathogen sample data collection and analysis.
definition editor: Damion Dooley

subnational region
type: Class
subclass of: first-order administrative region
subclass of: NCIT C16632
disjoint with: NCIT C25632
disjoint with: NCIT C87194
disjoint with: NCIT C89811
user interface label: region
user interface feature: lookup:http://purl.obolibrary.org/obo/GAZ_00000448
has curation status: IAO_0000428
definition: A subnational region is a type of subnational entity similar to a nation's state, province, or territory.
definition editor: Damion Dooley

public health data standard
type: Class
subclass of: NCIT C103180
has curation status: IAO_0000428
definition: A data standard related to public health research and service delivery.
definition editor: Damion Dooley

0D space
type: Class
subclass of: GENEPIO_0001854
has curation status: IAO_0000428
definition editor: Damion Dooley

reagent derived material from specimen
type: Class
subclass of: OBI_0001882
has curation status: IAO_0000122
definition: Reagent: material studied was obtained by chemical reaction, precipitation.
definition editor: Damion Dooley
definition source: https://www.ncbi.nlm.nih.gov/books/NBK54364/

transcriptome data from specimen
type: Class
subclass of: OBI_0001882
user interface label: transcriptome
has curation status: IAO_0000122
definition: Transcriptome: transcript and/or expression data.
definition editor: Damion Dooley
definition source: https://www.ncbi.nlm.nih.gov/books/NBK54364/

proteome data derived from specimen
type: Class
subclass of: OBI_0001882
user interface label: proteome
has curation status: IAO_0000122
definition: Proteome material is protein or peptide sequences.
definition editor: Damion Dooley
definition source: https://www.ncbi.nlm.nih.gov/books/NBK54364/

purified chromosome from specimen
type: Class
subclass of: OBI_0001882
user interface label: purified chromosome
has curation status: IAO_0000122
definition: Purified chromosome: one or more chromosomes or replicons were experimentally purified.
definition editor: Damion Dooley
definition source: https://www.ncbi.nlm.nih.gov/books/NBK54364/

Targeted Locus Loci data capture
type: Class
subclass of: OBI_0001899
user interface label: targeted locus/loci
has curation status: IAO_0000122
definition: TargetedLocusLoci: capturing specific loci (gene, genomic region, bar code standard).
definition editor: Damion Dooley
definition source: https://www.ncbi.nlm.nih.gov/books/NBK54364/

clone end data capture
type: Class
subclass of: OBI_0001899
user interface label: clone ends
has curation status: IAO_0000122
definition: CloneEnds: capturing clone end data.
definition editor: Damion Dooley
definition source: https://www.ncbi.nlm.nih.gov/books/NBK54364/

exome specific data capture
type: Class
subclass of: OBI_0001899
user interface label: exome
has curation status: IAO_0000122
definition: Exome: capturing exon-specific data.
definition editor: Damion Dooley
definition source: NCBI BioSample
definition source: https://www.ncbi.nlm.nih.gov/books/NBK54364/

random survey data capture
type: Class
subclass of: OBI_0001899
user interface label: random survey
has curation status: IAO_0000122
definition: Sequences generated from a random sampling of the collected sample; not intended to be comprehensive sampling of the material
editor note: Is this with respect to an isolate or a specimen derived culture?
definition editor: Damion Dooley
definition source: https://www.ncbi.nlm.nih.gov/books/NBK54364/

contact specification
type: Class
subclass of: data specification
has curation status: IAO_0000428
definition: This is a collection of various human (and animal contact location) contact information specifications used in data standards.
definition editor: Damion Dooley

contact specification - phone
type: Class
subclass of: contact specification
user interface feature: order: NCIT:C40978 # phone GENEPIO:0001896 # phone type
has curation status: IAO_0000428

millimetres per day
type: Class
subclass of: UO_0000060
has curation status: IAO_0000125
definition editor: Damion Dooley

obsolete: millisiemens
type: Class
term replaced by: UO_0010002
deprecated: true

millisiemens per centimetre
type: Class
subclass of: UO_0000000
has curation status: IAO_0000428
definition editor: Damion Dooley

cubic metre per second
type: Class
subclass of: UO_0000000
has curation status: IAO_0000428
definition editor: Damion Dooley

micromole per kilogram
type: Class
subclass of: UO_0000051
user interface label: umol/kg
has curation status: IAO_0000428
definition editor: Damion Dooley

micromole per litre
type: Class
subclass of: UO_0000051
has curation status: IAO_0000428
definition editor: Damion Dooley

quality control record
type: Class
subclass of: draft GenEpiO component record
has curation status: IAO_0000428
definition editor: Damion Dooley

1 - standard draft
type: Class
subclass of: assembly status
definition: Standard draft: describing the minimum information needed for submission to a public database.
definition editor: Damion Dooley

2 - high quality draft
type: Class
subclass of: assembly status
definition: High quality draft: describing sequences with little to no manual review.
definition editor: Damion Dooley

3 - improved high quality draft
type: Class
subclass of: assembly status
definition: Improved high quality draft: in which data is either reviewed by people or machines to some extent to indicate that most of the genetic data is assembled correctly, but some errors may still be present.
definition editor: Damion Dooley

4 - annotation-directed improvement
type: Class
subclass of: assembly status
definition: Annotation-directed improvement: in which genetic information in various gene regions is represented as accurately as possible.
definition editor: Damion Dooley

5 - non-contiguous finished
type: Class
subclass of: assembly status
definition: Non-contiguous finished: which includes sequences that have been reviewed by both people and machines and would be considered complete except for “recalcitrant regions” that are proving problematic for genome closure.
definition editor: Damion Dooley

6 - finished
type: Class
subclass of: assembly status
definition: Finished: which describes un-gapped complete sequences that have minimal errors, if any. The biology of the microbe will determine whether this finished genome consists of more than one chromosome.
definition editor: Damion Dooley

contig NG99
type: Class
subclass of: contig length
metadata section: Assembly QC
has curation status: http://purl.obolibrary.org/obo/IAO_0000428
definition: The NG99 length is the same as the N99 length except that the length of the reference genome is used in the calculation rather than the sum of assembly contig lengths.
definition editor: Damion Dooley
in_subset: core slim.owl

contig LG50
type: Class
subclass of: contig count
metadata section: Assembly QC
has curation status: http://purl.obolibrary.org/obo/IAO_0000428
definition: An assembly quality control datum which is defined as number of contigs equal to or longer than the contig N50, when the genome size is factored into the calculation.
definition editor: Damion Dooley

contig L99
type: Class
subclass of: contig count
metadata section: Assembly QC
has curation status: http://purl.obolibrary.org/obo/IAO_0000428
definition: Contig L99 is the number of contigs equal to or longer than contig N99. The length of the assembly itself is used in the calculation.
definition editor: Damion Dooley

subject age at time of specimen collection
type: Class
subclass of: subject age
has curation status: IAO_0000428
definition: A subject age at time of specimen extraction is the age (since birth) of the organism at the time a given specimen was extracted.
definition editor: Damion Dooley

pathogen specific data standard
type: Class
subclass of: public health lab epidemiology contextual data standard
has curation status: IAO_0000428
definition editor: A public health related data standard involving a particular species of pathogen.
definition editor: Damion Dooley

draft tuberculosis contextual data standard
type: Class
subclass of: draft data standard
has curation status: IAO_0000123
definition: The draft tuberculosis contextual data standard is a data standard for the collection of contextual information of a given tuberculosis case that pertain to typing, clinical treatment, and potential research questions.
definition editor: Damion Dooley

draft PulseNet Canada Salmonella submission standard
type: Class
subclass of: draft data standard
subclass of: Restriction
  on property: has component
  qualified cardinality: 1
  on class: Class
    intersection of: GENEPIO_0002468
    intersection of: Restriction
      on property: specifies value of
      some values from: outbreak identifier
    intersection of: Restriction
      on property: exactMatch
      has value: GENEPIO_0002201
    intersection of: Restriction
      on property: type uri
      some values from: string
    intersection of: Restriction
      on property: name
      has value: PulseNet:Outbreak
has curation status: IAO_0000428
definition: The PulseNet Canada Salmonella submission standard details the fields required in a PuseNet Canada pathogen submission report for Salmonella in spreadsheet format
definition editor: Damion Dooley

PFGE Xbal pattern
type: Class
subclass of: PFGE pattern
subclass of: Restriction
  on property: is about
  some values from: Xbal
definition: A PFGE pattern resulting from DNA fragmentation induced by the Xbal enzyme.
definition editor: http://orcid.org/0000-0002-8844-9165

PFGE Blnl pattern
type: Class
subclass of: PFGE pattern
subclass of: Restriction
  on property: is about
  some values from: Blnl
definition: A PFGE pattern resulting from DNA fragmentation induced by the Blnl enzyme.
definition editor: http://orcid.org/0000-0002-8844-9165

National Laboratory for Enteric Pathogens Identifier
type: Class
subclass of: OBI_0001616
user interface label: NLEP ID
definition: An NLEP ID is a unique identifier code for a sample registered with the Canadian "National Laboratory for Enteric Pathogens" (NLEP)
definition editor: Damion Dooley
definition source: Pulsenet Canada spreadsheet.

upload modified date
type: Class
subclass of: isolate history item
subclass of: Restriction
  on property: after
  some values from: isolate upload date
term source: PulseNet spreadsheet
definition: Date an uploaded sample was re-uploaded or had its metadata modified.
definition editor: Damion Dooley
database_cross_reference: PulseNet: UploadModifiedDate

travel destination
type: Class
subclass of: human exposure event - travel datum
has curation status: IAO_0000428
definition: A travel destination is a destination city (or populated place of some scale) which a given human has travelled to on a particular trip.
definition editor: Damion Dooley

symptom duration
type: Class
subclass of: symptom history item
subclass of: EFO_0000433
has curation status: IAO_0000428
definition: A symptom duration is a date-time entity which is the duration (in hours or days or weeks etc.) that one or more symptoms persist for in a particular human or animal
definition editor: Damion Dooley
comment: This may be a calculated field if symptoms are reported to cease on a particular date. Often however symptom duration is reported more generally as a date or time range since cesation date is less certain.

specimen collection location - city
type: Class
subclass of: GENEPIO_0002162
subclass of: Restriction
has curation status: IAO_0000428
definition: The city where a specimen was collected (taken) from a subject or environment
definition editor: Damion Dooley

Axiom
annotated source: specimen collection location - city
annotated property: subClassOf
annotated target: Restriction
user interface feature: lookup

obsolete: sample city
type: Class
definition editor: Damion Dooley
has obsolescence reason: IAO_0000227
term replaced by: specimen collection location - city
deprecated: true

genus of pathogen
type: Class
subclass of: taxonomic datum
subclass of: Restriction
  on property: is about
  some values from: NCBITaxon genus
has curation status: IAO_0000428
definition: This is the genus-level taxonomic name of an organism playing a pathogen role
definition editor: Damion Dooley

species of pathogen
type: Class
subclass of: taxonomic datum
subclass of: Restriction
  on property: is about
  some values from: NCBITaxon species
has curation status: IAO_0000428
definition: This is the species-level taxonomic name of an organism playing a pathogen role
definition editor: Damion Dooley

symptom cessation date
type: Class
subclass of: symptom history item
has curation status: IAO_0000428
definition: A symptom cessation date is a date-time entity that marks the end of one or more reported symptoms pertaining to an episode of human or animal illness
definition editor: Damion Dooley

specimen datum
type: Class
subclass of: IAO_0000027
subclass of: Restriction
  on property: is about
  some values from: OBI_0100051
definition: This is a catch-all category for listing specimen related terms
definition editor: Damion Dooley

isolate identifier specification
type: Class
subclass of: GENEPIO_0002468
subclass of: Restriction
  on property: specifies value of
  some values from: isolate identifier
has curation status: IAO_0000428

data obfuscated
type: Class
subclass of: data protection role
has curation status: IAO_0000428
definition: The 'data obfuscated' role between a user and given data entails that the user is authorized to see particular fields that have been transformed consistently such that statistics performed on those fields would yeild the same results as statistics applied to the un-obfuscated data. The purpose of obfuscation is to prevent related individuals or organizations from being identified.
definition editor: Damion Dooley

data aggregated
type: Class
subclass of: data protection role
has curation status: IAO_0000122
definition: The 'data aggregated' role between a user and given data entails that the user is authorized to see aggregated results (like the patient count) via preset reports, queries or views. The results are not obfuscated.
definition editor: Damion Dooley

limited data set
type: Class
subclass of: data protection role
has curation status: IAO_0000122
definition: A 'limited data set' role between a user and given data entails that a user is authorized to see some of the fields but the remainder are withheld (or encrypted).
definition editor: Damion Dooley

de-identified data
type: Class
subclass of: data protection role
user interface feature: help:In this dataset, selected data have been de-identified (anonymized) for access by dataset users.
has curation status: IAO_0000428
definition: A 'de-identified data' role between a user and given data entails that the user is authorized to see only those fields (including those that are encrypted) which do not contain information that could be use to identify particular individuals (whether patients or medical practitioners) or potentially organizations in the case where an investigation may implicate them.
editor note: Damion Dooley's note: There is a case in the "draft tuberculosis contextual data standard" that has this be a boolean selection. If a categorical field is linked directly, and it has no underlings, this indicates that it is being treated as a boolean feature.
definition editor: Damion Dooley
IAO_0000600: Generally de-identified data should include HIPAA patient privacy fields as indicated in https://www.hipaa.com/hipaa-protected-health-information-what-does-phi-include/

data protected
type: Class
subclass of: data protection role
has curation status: IAO_0000122
definition: A 'data protected' role between a user and given data entails that a user must be authorized in order to view that data.
definition editor: Damion Dooley

specimen collector
type: Class
subclass of: specimen datum
subclass of: Restriction
  on property: has component
  max qualified cardinality: 1
  on class: Class
    intersection of: GENEPIO_0002468
    intersection of: Restriction
      on property: specifies value of
      some values from: NCIT C25191
subclass of: Restriction
  on property: has component
  max qualified cardinality: 1
  on class: Class
    intersection of: GENEPIO_0002468
    intersection of: Restriction
      on property: specifies value of
      some values from: NCIT C93874
has curation status: IAO_0000122
definition: A datum containing the name of persons or institute who collected a given specimen.
definition editor: Damion Dooley
definition source: https://www.ncbi.nlm.nih.gov/biosample/docs/attributes/

NCBI BioSample culture identifier
type: Class
subclass of: culture identifier
definition editor: IAO_0000123
definition editor: Damion Dooley

user identifier
type: Class
subclass of: IAO_0000577
definition: A user identifier is an identifier provided as part of an authentication process of a client (user) to a service (server). User identifiers normally persist over time, in contrast to session identifiers which are temporary.
definition editor: Damion Dooley

sequence identifier
type: Class
subclass of: IAO_0000577

metagenomic species identification
type: Class
subclass of: assembly and annotation project objective

document citation identifier
type: Class
subclass of: IAO_0000577
definition: Note: REPLACE WITH Citation: SIO_000174 ????

organization identifier
type: Class
subclass of: IAO_0000577

collection identifier
type: Class
subclass of: IAO_0000577

variant calling / pathogen identification and clustering
type: Class
subclass of: assembly and annotation project objective

isolate (pathogen) identification
type: Class
subclass of: assembly and annotation project objective

obsolete: NCBI BioSample ID -
type: Class
term replaced by: http://purl.obolibrary.org/obo/OBI_0001616
deprecated: true

specimen title
type: Class
subclass of: specimen datum
example of usage: 1) Escherichia coli O104:H4 str. C227-11 clinical isolate 2010_333_NC-6 2) CD8+ T cells from female TSG6-knockout BALB/c mouse 3) Human metagenome isolated from urine of healthy female
has curation status: IAO_0000428
definition: A specimen (or sample) title should be short and informative. Each specimen title must be unique in a submission.
editor note: NCBI BioSample record documentation refers to a "BioSample title", stating that it is "auto-generated if one is not supplied by the submitter." This is distinct from any assigned BioSession accession, or other "external sample identifier" that may have been issued by the source database or repository.
definition editor: Damion Dooley

draft GenEpiO isolate source context
type: Class
subclass of: draft GenEpiO component record

restricted access
type: Class
subclass of: missing
term source: INSDC term (lower level)
has curation status: IAO_0000120
definition: A categorical choice recorded when the data for a given measurable datum is available but not shared publicly because of information privacy concerns.
definition source: missing-values.html
database_cross_reference: INSDC standard

State (United States of America)
type: Class
subclass of: NCIT C87194

health status trend datum
type: Class
subclass of: organism datum
subclass of: Restriction
  on property: is about
has curation status: IAO_0000428
definition: A health status trend is a short-term prognosis about whether health is improving, worsening or unchanging
definition editor: Damion Dooley