/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ // // This example reads hyperslab from the SDS.h5 file into // two-dimensional plane of a three-dimensional array. Various // information about the dataset in the SDS.h5 file is obtained. // #include using std::cout; using std::endl; #include #include "H5Cpp.h" using namespace H5; const H5std_string FILE_NAME("SDS.h5"); const H5std_string DATASET_NAME("IntArray"); const int NX_SUB = 3; // hyperslab dimensions const int NY_SUB = 4; const int NX = 7; // output buffer dimensions const int NY = 7; const int NZ = 3; const int RANK_OUT = 3; int main(void) { /* * Output buffer initialization. */ int i, j, k; int data_out[NX][NY][NZ]; /* output buffer */ for (j = 0; j < NX; j++) { for (i = 0; i < NY; i++) { for (k = 0; k < NZ; k++) data_out[j][i][k] = 0; } } /* * Try block to detect exceptions raised by any of the calls inside it */ try { /* * Turn off the auto-printing when failure occurs so that we can * handle the errors appropriately */ Exception::dontPrint(); /* * Open the specified file and the specified dataset in the file. */ H5File file(FILE_NAME, H5F_ACC_RDONLY); DataSet dataset = file.openDataSet(DATASET_NAME); /* * Get the class of the datatype that is used by the dataset. */ H5T_class_t type_class = dataset.getTypeClass(); /* * Get class of datatype and print message if it's an integer. */ if (type_class == H5T_INTEGER) { cout << "Data set has INTEGER type" << endl; /* * Get the integer datatype */ IntType intype = dataset.getIntType(); /* * Get order of datatype and print message if it's a little endian. */ H5std_string order_string; (void)intype.getOrder(order_string); cout << order_string << endl; /* * Get size of the data element stored in file and print it. */ size_t size = intype.getSize(); cout << "Data size is " << size << endl; } /* * Get dataspace of the dataset. */ DataSpace dataspace = dataset.getSpace(); /* * Get the number of dimensions in the dataspace. */ int rank = dataspace.getSimpleExtentNdims(); /* * Get the dimension size of each dimension in the dataspace and * display them. */ hsize_t dims_out[2]; (void)dataspace.getSimpleExtentDims(dims_out, NULL); cout << "rank " << rank << ", dimensions " << (unsigned long)(dims_out[0]) << " x " << (unsigned long)(dims_out[1]) << endl; /* * Define hyperslab in the dataset; implicitly giving strike and * block NULL. */ hsize_t offset[2]; // hyperslab offset in the file hsize_t count[2]; // size of the hyperslab in the file offset[0] = 1; offset[1] = 2; count[0] = NX_SUB; count[1] = NY_SUB; dataspace.selectHyperslab(H5S_SELECT_SET, count, offset); /* * Define the memory dataspace. */ hsize_t dimsm[3]; /* memory space dimensions */ dimsm[0] = NX; dimsm[1] = NY; dimsm[2] = NZ; DataSpace memspace(RANK_OUT, dimsm); /* * Define memory hyperslab. */ hsize_t offset_out[3]; // hyperslab offset in memory hsize_t count_out[3]; // size of the hyperslab in memory offset_out[0] = 3; offset_out[1] = 0; offset_out[2] = 0; count_out[0] = NX_SUB; count_out[1] = NY_SUB; count_out[2] = 1; memspace.selectHyperslab(H5S_SELECT_SET, count_out, offset_out); /* * Read data from hyperslab in the file into the hyperslab in * memory and display the data. */ dataset.read(data_out, PredType::NATIVE_INT, memspace, dataspace); for (j = 0; j < NX; j++) { for (i = 0; i < NY; i++) cout << data_out[j][i][0] << " "; cout << endl; } /* * 0 0 0 0 0 0 0 * 0 0 0 0 0 0 0 * 0 0 0 0 0 0 0 * 3 4 5 6 0 0 0 * 4 5 6 7 0 0 0 * 5 6 7 8 0 0 0 * 0 0 0 0 0 0 0 */ } // end of try block // catch failure caused by the H5File operations catch (FileIException error) { error.printErrorStack(); return -1; } // catch failure caused by the DataSet operations catch (DataSetIException error) { error.printErrorStack(); return -1; } // catch failure caused by the DataSpace operations catch (DataSpaceIException error) { error.printErrorStack(); return -1; } // catch failure caused by the DataSpace operations catch (DataTypeIException error) { error.printErrorStack(); return -1; } return 0; // successfully terminated }