/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ /* * This example how to work with extendible datasets. The dataset * must be chunked in order to be extendible. * * It is used in the HDF5 Tutorial. */ #include "hdf5.h" #define FILENAME "extend.h5" #define DATASETNAME "ExtendibleArray" #define RANK 2 int main(void) { hid_t file; /* handles */ hid_t dataspace, dataset; hid_t filespace, memspace; hid_t prop; hsize_t dims[2] = {3, 3}; /* dataset dimensions at creation time */ hsize_t maxdims[2] = {H5S_UNLIMITED, H5S_UNLIMITED}; herr_t status; hsize_t chunk_dims[2] = {2, 5}; int data[3][3] = {{1, 1, 1}, /* data to write */ {1, 1, 1}, {1, 1, 1}}; /* Variables used in extending and writing to the extended portion of dataset */ hsize_t size[2]; hsize_t offset[2]; hsize_t dimsext[2] = {7, 3}; /* extend dimensions */ int dataext[7][3] = {{2, 3, 4}, {2, 3, 4}, {2, 3, 4}, {2, 3, 4}, {2, 3, 4}, {2, 3, 4}, {2, 3, 4}}; /* Variables used in reading data back */ hsize_t chunk_dimsr[2]; hsize_t dimsr[2]; hsize_t i, j; int rdata[10][3]; herr_t status_n; int rank, rank_chunk; /* Create the data space with unlimited dimensions. */ dataspace = H5Screate_simple(RANK, dims, maxdims); /* Create a new file. If file exists its contents will be overwritten. */ file = H5Fcreate(FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); /* Modify dataset creation properties, i.e. enable chunking */ prop = H5Pcreate(H5P_DATASET_CREATE); status = H5Pset_chunk(prop, RANK, chunk_dims); /* Create a new dataset within the file using chunk creation properties. */ dataset = H5Dcreate2(file, DATASETNAME, H5T_NATIVE_INT, dataspace, H5P_DEFAULT, prop, H5P_DEFAULT); /* Write data to dataset */ status = H5Dwrite(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, data); /* Extend the dataset. Dataset becomes 10 x 3 */ size[0] = dims[0] + dimsext[0]; size[1] = dims[1]; status = H5Dset_extent(dataset, size); /* Select a hyperslab in extended portion of dataset */ filespace = H5Dget_space(dataset); offset[0] = 3; offset[1] = 0; status = H5Sselect_hyperslab(filespace, H5S_SELECT_SET, offset, NULL, dimsext, NULL); /* Define memory space */ memspace = H5Screate_simple(RANK, dimsext, NULL); /* Write the data to the extended portion of dataset */ status = H5Dwrite(dataset, H5T_NATIVE_INT, memspace, filespace, H5P_DEFAULT, dataext); /* Close resources */ status = H5Dclose(dataset); status = H5Pclose(prop); status = H5Sclose(dataspace); status = H5Sclose(memspace); status = H5Sclose(filespace); status = H5Fclose(file); /******************************************** * Re-open the file and read the data back. * ********************************************/ file = H5Fopen(FILENAME, H5F_ACC_RDONLY, H5P_DEFAULT); dataset = H5Dopen2(file, DATASETNAME, H5P_DEFAULT); filespace = H5Dget_space(dataset); rank = H5Sget_simple_extent_ndims(filespace); status_n = H5Sget_simple_extent_dims(filespace, dimsr, NULL); prop = H5Dget_create_plist(dataset); if (H5D_CHUNKED == H5Pget_layout(prop)) rank_chunk = H5Pget_chunk(prop, rank, chunk_dimsr); memspace = H5Screate_simple(rank, dimsr, NULL); status = H5Dread(dataset, H5T_NATIVE_INT, memspace, filespace, H5P_DEFAULT, rdata); printf("\n"); printf("Dataset: \n"); for (j = 0; j < dimsr[0]; j++) { for (i = 0; i < dimsr[1]; i++) printf("%d ", rdata[j][i]); printf("\n"); } status = H5Pclose(prop); status = H5Dclose(dataset); status = H5Sclose(filespace); status = H5Sclose(memspace); status = H5Fclose(file); }