/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ /* * This example reads hyperslab from the SDS.h5 file * created by h5_write.c program into two-dimensional * plane of the three-dimensional array. * Information about dataset in the SDS.h5 file is obtained. */ #include "hdf5.h" #define H5FILE_NAME "SDS.h5" #define DATASETNAME "IntArray" #define NX_SUB 3 /* hyperslab dimensions */ #define NY_SUB 4 #define NX 7 /* output buffer dimensions */ #define NY 7 #define NZ 3 #define RANK 2 #define RANK_OUT 3 int main(void) { hid_t file, dataset; /* handles */ hid_t datatype, dataspace; hid_t memspace; H5T_class_t t_class; /* data type class */ H5T_order_t order; /* data order */ size_t size; /* * size of the data element * stored in file */ hsize_t dimsm[3]; /* memory space dimensions */ hsize_t dims_out[2]; /* dataset dimensions */ herr_t status; int data_out[NX][NY][NZ]; /* output buffer */ hsize_t count[2]; /* size of the hyperslab in the file */ hsize_t offset[2]; /* hyperslab offset in the file */ hsize_t count_out[3]; /* size of the hyperslab in memory */ hsize_t offset_out[3]; /* hyperslab offset in memory */ int i, j, k, status_n, rank; for (j = 0; j < NX; j++) { for (i = 0; i < NY; i++) { for (k = 0; k < NZ; k++) data_out[j][i][k] = 0; } } /* * Open the file and the dataset. */ file = H5Fopen(H5FILE_NAME, H5F_ACC_RDONLY, H5P_DEFAULT); dataset = H5Dopen2(file, DATASETNAME, H5P_DEFAULT); /* * Get datatype and dataspace handles and then query * dataset class, order, size, rank and dimensions. */ datatype = H5Dget_type(dataset); /* datatype handle */ t_class = H5Tget_class(datatype); if (t_class == H5T_INTEGER) printf("Data set has INTEGER type \n"); order = H5Tget_order(datatype); if (order == H5T_ORDER_LE) printf("Little endian order \n"); size = H5Tget_size(datatype); printf(" Data size is %d \n", (int)size); dataspace = H5Dget_space(dataset); /* dataspace handle */ rank = H5Sget_simple_extent_ndims(dataspace); status_n = H5Sget_simple_extent_dims(dataspace, dims_out, NULL); printf("rank %d, dimensions %lu x %lu \n", rank, (unsigned long)(dims_out[0]), (unsigned long)(dims_out[1])); /* * Define hyperslab in the dataset. */ offset[0] = 1; offset[1] = 2; count[0] = NX_SUB; count[1] = NY_SUB; status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, offset, NULL, count, NULL); /* * Define the memory dataspace. */ dimsm[0] = NX; dimsm[1] = NY; dimsm[2] = NZ; memspace = H5Screate_simple(RANK_OUT, dimsm, NULL); /* * Define memory hyperslab. */ offset_out[0] = 3; offset_out[1] = 0; offset_out[2] = 0; count_out[0] = NX_SUB; count_out[1] = NY_SUB; count_out[2] = 1; status = H5Sselect_hyperslab(memspace, H5S_SELECT_SET, offset_out, NULL, count_out, NULL); /* * Read data from hyperslab in the file into the hyperslab in * memory and display. */ status = H5Dread(dataset, H5T_NATIVE_INT, memspace, dataspace, H5P_DEFAULT, data_out); for (j = 0; j < NX; j++) { for (i = 0; i < NY; i++) printf("%d ", data_out[j][i][0]); printf("\n"); } /* * 0 0 0 0 0 0 0 * 0 0 0 0 0 0 0 * 0 0 0 0 0 0 0 * 3 4 5 6 0 0 0 * 4 5 6 7 0 0 0 * 5 6 7 8 0 0 0 * 0 0 0 0 0 0 0 */ /* * Close/release resources. */ H5Tclose(datatype); H5Dclose(dataset); H5Sclose(dataspace); H5Sclose(memspace); H5Fclose(file); return 0; }