COM This line serves as a size and separator hint for spreadsheet applications. - - - - - - - - - - - - - - - - - - - - - - - COM Report of a minimal "Summary Quantification report" SILAC experiment, quantification on 2 study variables (control/treatment) reported MTD mzTab-version 1.0.0 MTD mzTab-mode Summary MTD mzTab-type Quantification MTD description mzTab example file for reporting a summary report of quantification data quantified on the protein level MTD ms_run[1]-location file://C:/path/to/my/file1.mzML MTD ms_run[2]-location file://C:/path/to/my/file2.mzML MTD ms_run[3]-location file://C:/path/to/my/file3.mzML MTD protein-quantification_unit [PRIDE, PRIDE:0000393, Relative quantification unit,] MTD protein_search_engine_score[1] [MS,MS:1001171,Mascot:score,] MTD fixed_mod[1] [UNIMOD, UNIMOD:4, Carbamidomethyl, ] MTD fixed_mod[2] [UNIMOD, UNIMOD:188, Label:13C(6), ] MTD variable_mod[1] [UNIMOD, UNIMOD:35, Oxidation, ] MTD study_variable[1]-description heat shock response of control MTD study_variable[2]-description heat shock response of treatment PRH accession description taxid species database database_version search_engine best_search_engine_score[1] ambiguity_members modifications protein_abundance_study_variable[1] protein_abundance_stdev_study_variable[1] protein_abundance_std_error_study_variable[1] protein_abundance_study_variable[2] protein_abundance_stdev_study_variable[2] protein_abundance_std_error_study_variable[2] COM Accession Description Taxonomie ID Species Database Version Search Engine best Mascot score Ambiguity Members Modifications Abundance (HSPControl) Standard Deviation (HSPControl) Standard Error (HSPControl) Abundance (HSPTreatment) Standard Deviation (HSPTreatment) Stdandard Error (HSPTreatment) PRT P63017 Heat shock cognate 71 kDa protein 10090 Mus musculus UniProtKB 2013_08 [MS,MS:1001207,Mascot,] 46 null 0 34.476 10.1346 5.85119 1576.05 311.399 179.786 PRT P14602 Heat shock protein beta-1 10090 Mus musculus UniProtKB 2013_08 [MS,MS:1001207,Mascot,] 100 Q340U4,Q5K0U2,P8L901 0 375.74 84.6393 48.8665 44183.8 74794.1 43182.4 PRT Q8K0U4 Heat shock 70 kDa protein 12A 10090 Mus musculus UniProtKB 2013_08 [MS,MS:1001207,Mascot,] 120 null 0 3684.4 418.102 241.391 769002 597373 344894 PRT Q61699 Heat shock protein 105 kDa 10090 Mus musculus UniProtKB 2013_08 [MS,MS:1001207,Mascot,] 39 null 0 36.435 2.90488 1.67713 11.1244 3.9066 2.25547 PRT P07901 Heat shock protein HSP 90-alpha 10090 Mus musculus UniProtKB 2013_08 [MS,MS:1001207,Mascot,] 45 null 12-UNIMOD:35, 98-UNIMOD:35,727-UNIMOD:35 3.2585 0.82735 0.47767 2.61161 2.82646 1.63186