mod.owl
type: Ontology
version IRI: mod.owl
date: 17:11:2025 12:12
default-namespace: PSI-MOD
has_obo_format_version: 1.2
saved-by: Eric Deutsch
comment: Annotation note 01 - "[PSI-MOD:ref]" has been replaced by PubMed:18688235.
comment: Annotation note 02 - When an entry in the RESID Database is annotated with different sources because the same modification can arise from different encoded amino acids, then the PSI-MOD definition for each different source instance carries the RESID cross-reference followed by a hash symbol "#" and a 3 or 4 character label. When an entry in the RESID Database is annotated as a general modification with the same enzymatic activity producing different chemical structures depending on natural variation in the nonproteinaceous substrate, on secondary modifications that do not change the nature of the primary modification, or on a combination of a primary and one or more secondary modifications on the same residue, then the PSI-MOD definition for each different instance carries the RESID cross-reference followed by the special tag "#var".
comment: Annotation note 03 - When an entry in the Unimod database is annotated as a general modification, and one or more instance sites are listed, then the PSI-MOD definition for each different site instance carries the Unimod cross-reference followed by a hash symbol and an amino acid code, "N-term" or "C-term".
comment: Annotation note 04 - The elemental formulas are in strict alphabetical order, not in CAS ("C" and "H" first) order. Isotope numbers are in parentheses before the element symbol, and an element should not occur in a formula both with and without an isotope number. In difference formulas, counts can be zero or negative.
comment: Annotation note 05 - In entries with an isotope indicator in the formula, average masses are meaningless and are assigned the value equal to the monoisotopic mass, but rounded to a lower precision; monoisotopic masses are calculated by using the masses for the indicated isotopes and the most common isotopes for other elements without isotope indicators in the formulas.
comment: Annotation note 06 - For cross-link modifications, the number following "Cross-link" in the comment record indicates the number of amino acid residues that appear in the origin record, used to check the difference formula and masses. This usage differs from RESID, where the cross-link number indicates the maximum number of peptide chains that can be cross-linked.
comment: Annotation note 07 - The synonym cross-reference "MOD:old name" has been replaced by "MOD:alternate name".
comment: Annotation note 08 - The DeltaMass listings for free amino acids have been removed. Most Unimod entries that have not been "approved" have by general agreement not been incorporated unless there has been a request for a specific term by a PRIDE submitter.
comment: Annotation note 09 - The Open Mass Spectrometry Search Algorithm, OMSSA, enumerated list of modifications are being incorporated. The string values are synonyms with the synonymtypedef "OMSSA-label", and their integer values (which are supposed to be stable) are definition cross-references.
comment: Annotation note 10 - GNOme is the Glycan Naming and Subsumption Ontology (https://gnome.glyomics.org/), an ontology for the support of glycomics. PSI-MOD does not have all possible glycans in its entries, just the ones that are noted to be on proteins and have been requested for addition. GNOme uses GlyTouCan (http://glytoucan.org/) to provide stable accessions for glycans described at varyious degrees of characterization, including compositions (no linkage) and topologies (no carbon bond positions or anomeric configurations).
comment: ISO-8601 date: 2022-06-13 12:12Z
comment: PSI-MOD version: 1.032.4
comment: RESID release: 75.00

definition
type: AnnotationProperty

term replaced by
type: AnnotationProperty

Label from MS DeltaMass
type: AnnotationProperty
has_scope: has_exact_synonym
sub property of: synonym_type_property

Short label from OMSSA
type: AnnotationProperty
has_scope: has_exact_synonym
sub property of: synonym_type_property

Alternate name curated by PSI-MOD
type: AnnotationProperty
has_scope: has_exact_synonym
sub property of: synonym_type_property

Short label curated by PSI-MOD
type: AnnotationProperty
has_scope: has_exact_synonym
sub property of: synonym_type_property

PSI-MOD-slim
type: AnnotationProperty
comment: subset of protein modifications
sub property of: subset_property

Agreed label from MS community
type: AnnotationProperty
has_scope: has_related_synonym
sub property of: synonym_type_property

Alternate name from RESID
type: AnnotationProperty
has_scope: has_exact_synonym
sub property of: synonym_type_property

Misnomer tagged alternate name from RESID
type: AnnotationProperty
has_scope: has_related_synonym
sub property of: synonym_type_property

Name from RESID
type: AnnotationProperty
has_scope: has_exact_synonym
sub property of: synonym_type_property

Systematic name from RESID
type: AnnotationProperty
has_scope: has_exact_synonym
sub property of: synonym_type_property

Protein feature description from UniProtKB
type: AnnotationProperty
has_scope: has_exact_synonym
sub property of: synonym_type_property

Alternate name from Unimod
type: AnnotationProperty
has_scope: has_related_synonym
sub property of: synonym_type_property

Description (full_name) from Unimod
type: AnnotationProperty
has_scope: has_related_synonym
sub property of: synonym_type_property

Interim label from Unimod
type: AnnotationProperty
has_scope: has_related_synonym
sub property of: synonym_type_property

subset_property
type: AnnotationProperty

synonym_type_property
type: AnnotationProperty

database_cross_reference
type: AnnotationProperty

has_exact_synonym
type: AnnotationProperty

has_obo_format_version
type: AnnotationProperty

has_obo_namespace
type: AnnotationProperty

has_related_synonym
type: AnnotationProperty

has_scope
type: AnnotationProperty

has_synonym_type
type: AnnotationProperty

in_subset
type: AnnotationProperty

contains
type: ObjectProperty
type: TransitiveProperty
definition: 'Entity A' contains 'Entity B' implies that 'Entity B' is a part of the structure of 'Entity A'.
has_obo_namespace: PSI-MOD
id: contains
comment: The inverse relationship to "part of".

Axiom
annotated source: contains
annotated property: definition
annotated target: 'Entity A' contains 'Entity B' implies that 'Entity B' is a part of the structure of 'Entity A'.
database_cross_reference: PubMed:18688235

derives from
type: ObjectProperty
type: TransitiveProperty
definition: 'Entity A' derives_from 'Entity B' implies that 'Entity A' is chemically derived from 'Entity B'.
has_obo_namespace: PSI-MOD
id: derives_from

Axiom
annotated source: derives from
annotated property: definition
annotated target: 'Entity A' derives_from 'Entity B' implies that 'Entity A' is chemically derived from 'Entity B'.
database_cross_reference: PubMed:18688235

has functional parent
type: ObjectProperty
type: TransitiveProperty
definition: 'Entity A' has_functional_parent 'Entity B' implies that 'Entity B' has at least one chacteristic group from which 'Entity A' can be derived by functional modification.
has_obo_namespace: PSI-MOD
id: has_functional_parent
comment: This relationship indicates that the formula and mass of the child are not inherited from the mass of the parent.

Axiom
annotated source: has functional parent
annotated property: definition
annotated target: 'Entity A' has_functional_parent 'Entity B' implies that 'Entity B' has at least one chacteristic group from which 'Entity A' can be derived by functional modification.
database_cross_reference: PubMed:18688235

part of
type: ObjectProperty
type: TransitiveProperty
definition: 'Entity A' part_of 'Entity B' implies that 'Entity A' is a part of the structure of 'Entity B'.
has_obo_namespace: PSI-MOD
id: part_of

Axiom
annotated source: part of
annotated property: definition
annotated target: 'Entity A' part_of 'Entity B' implies that 'Entity A' is a part of the structure of 'Entity B'.
database_cross_reference: PubMed:18688235

protein modification
type: Class
definition: Covalent modification of, or a change resulting in an alteration of the measured molecular mass of, a peptide or protein amino acid residue.
has_exact_synonym: ModRes
has_obo_namespace: PSI-MOD
id: MOD:00000
in_subset: PSI-MOD-slim

Axiom
annotated source: protein modification
annotated property: definition
annotated target: Covalent modification of, or a change resulting in an alteration of the measured molecular mass of, a peptide or protein amino acid residue.
database_cross_reference: PubMed:18688235

Axiom
annotated source: protein modification
annotated property: has_exact_synonym
annotated target: ModRes
has_synonym_type: Short label curated by PSI-MOD

alkylated residue
type: Class
subclass of: MOD_01156
definition: A protein modification that effectively replaces a hydrogen atom with an alkyl group.
has_exact_synonym: AlkylRes
has_obo_namespace: PSI-MOD
id: MOD:00001
in_subset: PSI-MOD-slim

Axiom
annotated source: alkylated residue
annotated property: definition
annotated target: A protein modification that effectively replaces a hydrogen atom with an alkyl group.
database_cross_reference: PubMed:18688235

Axiom
annotated source: alkylated residue
annotated property: has_exact_synonym
annotated target: AlkylRes
has_synonym_type: Short label curated by PSI-MOD

O-glycosyl-L-serine
type: Class
subclass of: O-glycosylated residue
subclass of: MOD_00916
definition: A protein modification that effectively converts an L-serine residue to O3-glycosylserine.
origin: S
source: natural
has_exact_synonym: OGlycoSer
has_obo_namespace: PSI-MOD
id: MOD:00002
in_subset: PSI-MOD-slim

Axiom
annotated source: O-glycosyl-L-serine
annotated property: has_exact_synonym
annotated target: OGlycoSer
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: O-glycosyl-L-serine
annotated property: definition
annotated target: A protein modification that effectively converts an L-serine residue to O3-glycosylserine.
database_cross_reference: PubMed:18688235

Unimod
type: Class
subclass of: uncategorized protein modification
definition: Entry from Unimod.
has_obo_namespace: PSI-MOD
id: MOD:00003
comment: This term is for organizational use only and should not be assigned. [JSG]

Axiom
annotated source: Unimod
annotated property: definition
annotated target: Entry from Unimod.
database_cross_reference: PubMed:18688235

artifact
type: Class
definition: Artifact entry from Unimod - OBSOLETE because organizational use is no longer required.
has_obo_namespace: PSI-MOD
id: MOD:00004
deprecated: true

Axiom
annotated source: artifact
annotated property: definition
annotated target: Artifact entry from Unimod - OBSOLETE because organizational use is no longer required.
database_cross_reference: PubMed:18688235

O-glycosyl-L-threonine
type: Class
subclass of: O-glycosylated residue
subclass of: MOD_00917
definition: A protein modification that effectively converts an L-threonine residue to O3-glycosylthreonine.
origin: T
source: natural
has_exact_synonym: OGlycoThr
has_obo_namespace: PSI-MOD
id: MOD:00005
in_subset: PSI-MOD-slim

Axiom
annotated source: O-glycosyl-L-threonine
annotated property: definition
annotated target: A protein modification that effectively converts an L-threonine residue to O3-glycosylthreonine.
database_cross_reference: PubMed:18688235

Axiom
annotated source: O-glycosyl-L-threonine
annotated property: has_exact_synonym
annotated target: OGlycoThr
has_synonym_type: Short label curated by PSI-MOD

N-glycosylated residue
type: Class
subclass of: MOD_00693
definition: A protein modification that effectively replaces a residue hydrogen atom on a nitrogen with a carbohydrate-like group through a glycosidic bond.
has_exact_synonym: NGlycoRes
has_obo_namespace: PSI-MOD
id: MOD:00006
in_subset: PSI-MOD-slim

Axiom
annotated source: N-glycosylated residue
annotated property: definition
annotated target: A protein modification that effectively replaces a residue hydrogen atom on a nitrogen with a carbohydrate-like group through a glycosidic bond.
database_cross_reference: PubMed:18688235

Axiom
annotated source: N-glycosylated residue
annotated property: has_exact_synonym
annotated target: NGlycoRes
has_synonym_type: Short label curated by PSI-MOD

selenium substitution for sulfur
type: Class
subclass of: MOD_00745
definition: A protein modification that effectively substitutes a selenium atom for a sulfur atom.
diff avg: 46.91
diff formula: C 0 H 0 N 0 O 0 S -1 Se 1
diff mono: 47.94445
origin: X
source: natural
database_cross_reference: Unimod:162
has_exact_synonym: Se(S)Res
has_obo_namespace: PSI-MOD
has_related_synonym: Delta:S(-1)Se(1)
has_related_synonym: Selenium replaces sulphur
id: MOD:00007

Axiom
annotated source: selenium substitution for sulfur
annotated property: definition
annotated target: A protein modification that effectively substitutes a selenium atom for a sulfur atom.
database_cross_reference: PubMed:12148805
database_cross_reference: Unimod:162

Axiom
annotated source: selenium substitution for sulfur
annotated property: has_exact_synonym
annotated target: Se(S)Res
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: selenium substitution for sulfur
annotated property: has_related_synonym
annotated target: Delta:S(-1)Se(1)
has_synonym_type: Agreed label from MS community

Axiom
annotated source: selenium substitution for sulfur
annotated property: has_related_synonym
annotated target: Selenium replaces sulphur
has_synonym_type: Description (full_name) from Unimod

common
type: Class
definition: Entry from Unimod representing one or more entries in RESID. OBSOLETE because organizational use is no longer required.
has_obo_namespace: PSI-MOD
id: MOD:00008
deprecated: true

Axiom
annotated source: common
annotated property: definition
annotated target: Entry from Unimod representing one or more entries in RESID. OBSOLETE because organizational use is no longer required.
database_cross_reference: PubMed:18688235

natural residue
type: Class
subclass of: MOD_01157
definition: A protein modification that removes a residue, or inserts or replaces a residue with a natural, standard or nonstandard, encoded residue.
origin: X
source: natural
has_exact_synonym: Res
has_exact_synonym: alpha-amino acid
has_obo_namespace: PSI-MOD
id: MOD:00009
in_subset: PSI-MOD-slim

Axiom
annotated source: natural residue
annotated property: definition
annotated target: A protein modification that removes a residue, or inserts or replaces a residue with a natural, standard or nonstandard, encoded residue.
database_cross_reference: PubMed:6692818
database_cross_reference: RESID:AA0000

Axiom
annotated source: natural residue
annotated property: has_exact_synonym
annotated target: Res
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: natural residue
annotated property: has_exact_synonym
annotated target: alpha-amino acid
has_synonym_type: Name from RESID

L-alanine residue
type: Class
subclass of: residues isobaric at 71.037114 Da
subclass of: MOD_00859
subclass of: MOD_01441
definition: A protein modification that effectively converts a source amino acid residue to an L-alanine.
diff avg: 0.0
diff formula: C 0 H 0 N 0 O 0
diff mono: 0.0
formula: C 3 H 5 N 1 O 1
mass avg: 71.08
mass mono: 71.03712
origin: A
source: natural
has_exact_synonym: (2S)-2-aminopropanoic acid
has_exact_synonym: 2-aminopropionic acid
has_exact_synonym: 2-azanylpropanoic acid
has_exact_synonym: Ala
has_exact_synonym: L-alanine
has_exact_synonym: alpha-alanine
has_exact_synonym: alpha-aminopropionic acid
has_obo_namespace: PSI-MOD
id: MOD:00010
in_subset: PSI-MOD-slim

Axiom
annotated source: L-alanine residue
annotated property: definition
annotated target: A protein modification that effectively converts a source amino acid residue to an L-alanine.
database_cross_reference: ChEBI:29948
database_cross_reference: DeltaMass:0
database_cross_reference: PubMed:6692818
database_cross_reference: RESID:AA0001

Axiom
annotated source: L-alanine residue
annotated property: has_exact_synonym
annotated target: (2S)-2-aminopropanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-alanine residue
annotated property: has_exact_synonym
annotated target: 2-aminopropionic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-alanine residue
annotated property: has_exact_synonym
annotated target: 2-azanylpropanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-alanine residue
annotated property: has_exact_synonym
annotated target: Ala
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-alanine residue
annotated property: has_exact_synonym
annotated target: L-alanine
has_synonym_type: Name from RESID

Axiom
annotated source: L-alanine residue
annotated property: has_exact_synonym
annotated target: alpha-alanine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-alanine residue
annotated property: has_exact_synonym
annotated target: alpha-aminopropionic acid
has_synonym_type: Alternate name from RESID

L-arginine residue
type: Class
subclass of: MOD_01441
definition: A protein modification that effectively converts a source amino acid residue to an L-arginine.
diff avg: 0.0
diff formula: C 0 H 0 N 0 O 0
diff mono: 0.0
formula: C 6 H 12 N 4 O 1
mass avg: 156.19
mass mono: 156.1011
origin: R
source: natural
has_exact_synonym: (2S)-2-amino-5-[(diaminomethylidene)amino]pentanoic acid
has_exact_synonym: 2-amino-5-(carbamimidamido)pentanoic acid [tautomer]
has_exact_synonym: 2-amino-5-[(aminoiminomethyl)amino]pentanoic acid [tautomer]
has_exact_synonym: 2-amino-5-guanidinopentanoic acid
has_exact_synonym: 2-amino-5-guanidinovaleric acid
has_exact_synonym: 2-azanyl-5-[bis(azanyl)methylideneazanyl]pentanoic acid
has_exact_synonym: Arg
has_exact_synonym: L-arginine
has_exact_synonym: alpha-amino-delta-guanidinovaleric acid
has_obo_namespace: PSI-MOD
id: MOD:00011
in_subset: PSI-MOD-slim

Axiom
annotated source: L-arginine residue
annotated property: definition
annotated target: A protein modification that effectively converts a source amino acid residue to an L-arginine.
database_cross_reference: ChEBI:29952
database_cross_reference: DeltaMass:0
database_cross_reference: PubMed:518876
database_cross_reference: PubMed:6692818
database_cross_reference: RESID:AA0002

Axiom
annotated source: L-arginine residue
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-5-[(diaminomethylidene)amino]pentanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-arginine residue
annotated property: has_exact_synonym
annotated target: 2-amino-5-(carbamimidamido)pentanoic acid [tautomer]
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-arginine residue
annotated property: has_exact_synonym
annotated target: 2-amino-5-[(aminoiminomethyl)amino]pentanoic acid [tautomer]
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-arginine residue
annotated property: has_exact_synonym
annotated target: 2-amino-5-guanidinopentanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-arginine residue
annotated property: has_exact_synonym
annotated target: 2-amino-5-guanidinovaleric acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-arginine residue
annotated property: has_exact_synonym
annotated target: 2-azanyl-5-[bis(azanyl)methylideneazanyl]pentanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-arginine residue
annotated property: has_exact_synonym
annotated target: Arg
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-arginine residue
annotated property: has_exact_synonym
annotated target: L-arginine
has_synonym_type: Name from RESID

Axiom
annotated source: L-arginine residue
annotated property: has_exact_synonym
annotated target: alpha-amino-delta-guanidinovaleric acid
has_synonym_type: Alternate name from RESID

L-asparagine residue
type: Class
subclass of: MOD_00859
subclass of: MOD_01441
definition: A protein modification that effectively converts a source amino acid residue to an L-asparagine.
diff avg: 0.0
diff formula: C 0 H 0 N 0 O 0
diff mono: 0.0
formula: C 4 H 6 N 2 O 2
mass avg: 114.1
mass mono: 114.04293
origin: N
source: natural
has_exact_synonym: (2S)-2-amino-4-butanediamic acid
has_exact_synonym: 2,4-bis(azanyl)-4-oxobutanoic acid
has_exact_synonym: 2,4-diamino-4-oxobutanoic acid
has_exact_synonym: 2-amino-3-carbamoylpropanoic acid
has_exact_synonym: 2-amino-4-butanediamic acid
has_exact_synonym: 2-aminosuccinamic acid
has_exact_synonym: 2-aminosuccinic acid 4-amide
has_exact_synonym: Asn
has_exact_synonym: L-asparagine
has_exact_synonym: alpha-amino-beta-carbamylpropionic acid
has_exact_synonym: alpha-aminosuccinamic acid
has_exact_synonym: aspartic acid 4-amide
has_exact_synonym: aspartic acid beta-amide
has_exact_synonym: beta-asparagine
has_obo_namespace: PSI-MOD
id: MOD:00012
in_subset: PSI-MOD-slim

Axiom
annotated source: L-asparagine residue
annotated property: definition
annotated target: A protein modification that effectively converts a source amino acid residue to an L-asparagine.
database_cross_reference: ChEBI:29956
database_cross_reference: DeltaMass:0
database_cross_reference: PubMed:15736973
database_cross_reference: PubMed:5681232
database_cross_reference: PubMed:6692818
database_cross_reference: PubMed:9789001
database_cross_reference: RESID:AA0003

Axiom
annotated source: L-asparagine residue
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-4-butanediamic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-asparagine residue
annotated property: has_exact_synonym
annotated target: 2,4-bis(azanyl)-4-oxobutanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-asparagine residue
annotated property: has_exact_synonym
annotated target: 2,4-diamino-4-oxobutanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-asparagine residue
annotated property: has_exact_synonym
annotated target: 2-amino-3-carbamoylpropanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-asparagine residue
annotated property: has_exact_synonym
annotated target: 2-amino-4-butanediamic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-asparagine residue
annotated property: has_exact_synonym
annotated target: 2-aminosuccinamic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-asparagine residue
annotated property: has_exact_synonym
annotated target: 2-aminosuccinic acid 4-amide
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-asparagine residue
annotated property: has_exact_synonym
annotated target: Asn
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-asparagine residue
annotated property: has_exact_synonym
annotated target: L-asparagine
has_synonym_type: Name from RESID

Axiom
annotated source: L-asparagine residue
annotated property: has_exact_synonym
annotated target: alpha-amino-beta-carbamylpropionic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-asparagine residue
annotated property: has_exact_synonym
annotated target: alpha-aminosuccinamic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-asparagine residue
annotated property: has_exact_synonym
annotated target: aspartic acid 4-amide
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-asparagine residue
annotated property: has_exact_synonym
annotated target: aspartic acid beta-amide
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-asparagine residue
annotated property: has_exact_synonym
annotated target: beta-asparagine
has_synonym_type: Alternate name from RESID

L-aspartic acid residue
type: Class
subclass of: MOD_00859
subclass of: MOD_01441
definition: A protein modification that effectively converts a source amino acid residue to an L-aspartic acid.
diff avg: 0.0
diff formula: C 0 H 0 N 0 O 0
diff mono: 0.0
formula: C 4 H 5 N 1 O 3
mass avg: 115.09
mass mono: 115.02694
origin: D
source: natural
has_exact_synonym: (2S)-2-aminobutanedioic acid
has_exact_synonym: 2-azanylbutanedioic acid
has_exact_synonym: Asp
has_exact_synonym: L-aspartic acid
has_exact_synonym: aminosuccinic acid
has_obo_namespace: PSI-MOD
id: MOD:00013
in_subset: PSI-MOD-slim

Axiom
annotated source: L-aspartic acid residue
annotated property: definition
annotated target: A protein modification that effectively converts a source amino acid residue to an L-aspartic acid.
database_cross_reference: ChEBI:29958
database_cross_reference: DeltaMass:0
database_cross_reference: PubMed:1097438
database_cross_reference: PubMed:339692
database_cross_reference: PubMed:4399050
database_cross_reference: PubMed:5764436
database_cross_reference: PubMed:6692818
database_cross_reference: PubMed:8089117
database_cross_reference: PubMed:9521123
database_cross_reference: PubMed:9582379
database_cross_reference: RESID:AA0004

Axiom
annotated source: L-aspartic acid residue
annotated property: has_exact_synonym
annotated target: (2S)-2-aminobutanedioic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-aspartic acid residue
annotated property: has_exact_synonym
annotated target: 2-azanylbutanedioic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-aspartic acid residue
annotated property: has_exact_synonym
annotated target: Asp
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-aspartic acid residue
annotated property: has_exact_synonym
annotated target: L-aspartic acid
has_synonym_type: Name from RESID

Axiom
annotated source: L-aspartic acid residue
annotated property: has_exact_synonym
annotated target: aminosuccinic acid
has_synonym_type: Alternate name from RESID

L-cysteine residue
type: Class
subclass of: MOD_00859
subclass of: MOD_01441
definition: A protein modification that effectively converts a source amino acid residue to an L-cysteine.
diff avg: 0.0
diff formula: C 0 H 0 N 0 O 0 S 0
diff mono: 0.0
formula: C 3 H 5 N 1 O 1 S 1
mass avg: 103.14
mass mono: 103.009186
origin: C
source: natural
has_exact_synonym: (2R)-2-amino-3-sulfanylpropanoic acid
has_exact_synonym: (R)-cysteine
has_exact_synonym: 2-amino-3-mercaptopropanoic acid
has_exact_synonym: 2-amino-3-mercaptopropionic acid
has_exact_synonym: 2-azanyl-3-sulfanylpropanoic acid
has_exact_synonym: 3-mercapto-L-alanine
has_exact_synonym: Cys
has_exact_synonym: Cysteine (C, Cys)
has_exact_synonym: L-(+)-cysteine
has_exact_synonym: L-cysteine
has_exact_synonym: alpha-amino-beta-mercaptopropanoic acid
has_exact_synonym: alpha-amino-beta-mercaptopropionic acid
has_exact_synonym: alpha-amino-beta-thiolpropionic acid
has_exact_synonym: beta-mercaptoalanine
has_exact_synonym: half-cystine
has_exact_synonym: thioserine
has_obo_namespace: PSI-MOD
id: MOD:00014
in_subset: PSI-MOD-slim
comment: From DeltaMass: Average Mass: 121.

Axiom
annotated source: L-cysteine residue
annotated property: definition
annotated target: A protein modification that effectively converts a source amino acid residue to an L-cysteine.
database_cross_reference: ChEBI:29950
database_cross_reference: DeltaMass:0
database_cross_reference: PubMed:1310545
database_cross_reference: PubMed:15790858
database_cross_reference: PubMed:3447159
database_cross_reference: PubMed:6692818
database_cross_reference: PubMed:7338899
database_cross_reference: RESID:AA0005

Axiom
annotated source: L-cysteine residue
annotated property: has_exact_synonym
annotated target: (2R)-2-amino-3-sulfanylpropanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-cysteine residue
annotated property: has_exact_synonym
annotated target: (R)-cysteine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteine residue
annotated property: has_exact_synonym
annotated target: 2-amino-3-mercaptopropanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteine residue
annotated property: has_exact_synonym
annotated target: 2-amino-3-mercaptopropionic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteine residue
annotated property: has_exact_synonym
annotated target: 2-azanyl-3-sulfanylpropanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteine residue
annotated property: has_exact_synonym
annotated target: 3-mercapto-L-alanine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteine residue
annotated property: has_exact_synonym
annotated target: Cys
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-cysteine residue
annotated property: has_exact_synonym
annotated target: Cysteine (C, Cys)
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: L-cysteine residue
annotated property: has_exact_synonym
annotated target: L-(+)-cysteine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteine residue
annotated property: has_exact_synonym
annotated target: L-cysteine
has_synonym_type: Name from RESID

Axiom
annotated source: L-cysteine residue
annotated property: has_exact_synonym
annotated target: alpha-amino-beta-mercaptopropanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteine residue
annotated property: has_exact_synonym
annotated target: alpha-amino-beta-mercaptopropionic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteine residue
annotated property: has_exact_synonym
annotated target: alpha-amino-beta-thiolpropionic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteine residue
annotated property: has_exact_synonym
annotated target: beta-mercaptoalanine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteine residue
annotated property: has_exact_synonym
annotated target: half-cystine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteine residue
annotated property: has_exact_synonym
annotated target: thioserine
has_synonym_type: Alternate name from RESID

L-glutamic acid residue
type: Class
subclass of: MOD_00859
subclass of: MOD_01441
definition: A protein modification that effectively converts a source amino acid residue to an L-glutamic acid.
diff avg: 0.0
diff formula: C 0 H 0 N 0 O 0
diff mono: 0.0
formula: C 5 H 7 N 1 O 3
mass avg: 129.12
mass mono: 129.04259
origin: E
source: natural
has_exact_synonym: (2S)-2-aminopentanedioic acid
has_exact_synonym: 1-aminopropane-1,3-dicarboxylic acid
has_exact_synonym: 2-aminoglutaric acid
has_exact_synonym: 2-azanylpentanedioic acid
has_exact_synonym: Glu
has_exact_synonym: L-glutamic acid
has_exact_synonym: alpha-aminoglutaric acid
has_exact_synonym: glutaminic acid
has_obo_namespace: PSI-MOD
id: MOD:00015
in_subset: PSI-MOD-slim

Axiom
annotated source: L-glutamic acid residue
annotated property: definition
annotated target: A protein modification that effectively converts a source amino acid residue to an L-glutamic acid.
database_cross_reference: ChEBI:29972
database_cross_reference: DeltaMass:0
database_cross_reference: PubMed:1881881
database_cross_reference: PubMed:4565668
database_cross_reference: PubMed:4922541
database_cross_reference: PubMed:6692818
database_cross_reference: PubMed:9326660
database_cross_reference: PubMed:957425
database_cross_reference: RESID:AA0006

Axiom
annotated source: L-glutamic acid residue
annotated property: has_exact_synonym
annotated target: (2S)-2-aminopentanedioic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-glutamic acid residue
annotated property: has_exact_synonym
annotated target: 1-aminopropane-1,3-dicarboxylic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-glutamic acid residue
annotated property: has_exact_synonym
annotated target: 2-aminoglutaric acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-glutamic acid residue
annotated property: has_exact_synonym
annotated target: 2-azanylpentanedioic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-glutamic acid residue
annotated property: has_exact_synonym
annotated target: Glu
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-glutamic acid residue
annotated property: has_exact_synonym
annotated target: L-glutamic acid
has_synonym_type: Name from RESID

Axiom
annotated source: L-glutamic acid residue
annotated property: has_exact_synonym
annotated target: alpha-aminoglutaric acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-glutamic acid residue
annotated property: has_exact_synonym
annotated target: glutaminic acid
has_synonym_type: Alternate name from RESID

L-glutamine residue
type: Class
subclass of: MOD_00894
subclass of: MOD_01441
definition: A protein modification that effectively converts a source amino acid residue to an L-glutamine.
diff avg: 0.0
diff formula: C 0 H 0 N 0 O 0
diff mono: 0.0
formula: C 5 H 8 N 2 O 2
mass avg: 128.13
mass mono: 128.05858
origin: Q
source: natural
has_exact_synonym: (2S)-2-amino-5-pentanediamic acid
has_exact_synonym: 2,5-bis(azanyl)-5-oxopentanoic acid
has_exact_synonym: 2,5-diamino-5-oxopentanoic acid
has_exact_synonym: 2-amino-4-carbamoylbutanoic acid
has_exact_synonym: 2-aminoglutaramic acid
has_exact_synonym: Gln
has_exact_synonym: L-glutamine
has_exact_synonym: alpha-amino-gamma-carbamylbutyric acid
has_exact_synonym: glutamic acid 5-amide
has_exact_synonym: glutamic acid gamma-amide
has_exact_synonym: glutamide
has_obo_namespace: PSI-MOD
id: MOD:00016
in_subset: PSI-MOD-slim

Axiom
annotated source: L-glutamine residue
annotated property: has_exact_synonym
annotated target: glutamic acid gamma-amide
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-glutamine residue
annotated property: has_exact_synonym
annotated target: glutamide
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-glutamine residue
annotated property: definition
annotated target: A protein modification that effectively converts a source amino acid residue to an L-glutamine.
database_cross_reference: ChEBI:30011
database_cross_reference: DeltaMass:0
database_cross_reference: PubMed:3340166
database_cross_reference: PubMed:6692818
database_cross_reference: PubMed:9342308
database_cross_reference: RESID:AA0007

Axiom
annotated source: L-glutamine residue
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-5-pentanediamic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-glutamine residue
annotated property: has_exact_synonym
annotated target: 2,5-bis(azanyl)-5-oxopentanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-glutamine residue
annotated property: has_exact_synonym
annotated target: 2,5-diamino-5-oxopentanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-glutamine residue
annotated property: has_exact_synonym
annotated target: 2-amino-4-carbamoylbutanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-glutamine residue
annotated property: has_exact_synonym
annotated target: 2-aminoglutaramic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-glutamine residue
annotated property: has_exact_synonym
annotated target: Gln
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-glutamine residue
annotated property: has_exact_synonym
annotated target: L-glutamine
has_synonym_type: Name from RESID

Axiom
annotated source: L-glutamine residue
annotated property: has_exact_synonym
annotated target: alpha-amino-gamma-carbamylbutyric acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-glutamine residue
annotated property: has_exact_synonym
annotated target: glutamic acid 5-amide
has_synonym_type: Alternate name from RESID

glycine residue
type: Class
subclass of: MOD_01441
definition: A protein modification that effectively converts a source amino acid residue to a glycine.
diff avg: 0.0
diff formula: C 0 H 0 N 0 O 0
diff mono: 0.0
formula: C 2 H 3 N 1 O 1
mass avg: 57.05
mass mono: 57.021465
origin: G
source: natural
has_exact_synonym: Gly
has_exact_synonym: aminoacetic acid
has_exact_synonym: aminoethanoic acid
has_exact_synonym: azanylethanoic acid
has_exact_synonym: glycine
has_exact_synonym: glycocoll
has_obo_namespace: PSI-MOD
id: MOD:00017
in_subset: PSI-MOD-slim

Axiom
annotated source: glycine residue
annotated property: definition
annotated target: A protein modification that effectively converts a source amino acid residue to a glycine.
database_cross_reference: ChEBI:29947
database_cross_reference: DeltaMass:0
database_cross_reference: PubMed:1310545
database_cross_reference: PubMed:6692818
database_cross_reference: RESID:AA0008

Axiom
annotated source: glycine residue
annotated property: has_exact_synonym
annotated target: Gly
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: glycine residue
annotated property: has_exact_synonym
annotated target: aminoacetic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: glycine residue
annotated property: has_exact_synonym
annotated target: aminoethanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: glycine residue
annotated property: has_exact_synonym
annotated target: azanylethanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: glycine residue
annotated property: has_exact_synonym
annotated target: glycine
has_synonym_type: Name from RESID

Axiom
annotated source: glycine residue
annotated property: has_exact_synonym
annotated target: glycocoll
has_synonym_type: Alternate name from RESID

L-histidine residue
type: Class
subclass of: MOD_01441
definition: A protein modification that effectively converts a source amino acid residue to an L-histidine.
diff avg: 0.0
diff formula: C 0 H 0 N 0 O 0
diff mono: 0.0
formula: C 6 H 7 N 3 O 1
mass avg: 137.14
mass mono: 137.05891
origin: H
source: natural
has_exact_synonym: (2S)-2-amino-3-(1H-imidazol-4-yl)propanoic acid
has_exact_synonym: (2S)-2-amino-3-(1H-imidazol-5-yl)propanoic acid [tautomer]
has_exact_synonym: 2-azanyl-3-(1H-imidazol-4-yl)propanoic acid
has_exact_synonym: 2-azanyl-3-(1H-imidazol-5-yl)propanoic acid [tautomer]
has_exact_synonym: 4-(2-amino-2-carboxyethyl)imidazole
has_exact_synonym: His
has_exact_synonym: L-histidine
has_exact_synonym: alpha-amino-beta-(4-imidazole)propionic acid
has_exact_synonym: glyoxaline-5-alanine
has_obo_namespace: PSI-MOD
id: MOD:00018
in_subset: PSI-MOD-slim

Axiom
annotated source: L-histidine residue
annotated property: definition
annotated target: A protein modification that effectively converts a source amino acid residue to an L-histidine.
database_cross_reference: ChEBI:29979
database_cross_reference: DeltaMass:0
database_cross_reference: PubMed:14342316
database_cross_reference: PubMed:2722967
database_cross_reference: PubMed:512
database_cross_reference: PubMed:5460889
database_cross_reference: PubMed:6129252
database_cross_reference: PubMed:6692818
database_cross_reference: PubMed:6876174
database_cross_reference: RESID:AA0009

Axiom
annotated source: L-histidine residue
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-3-(1H-imidazol-4-yl)propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-histidine residue
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-3-(1H-imidazol-5-yl)propanoic acid [tautomer]
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-histidine residue
annotated property: has_exact_synonym
annotated target: 2-azanyl-3-(1H-imidazol-4-yl)propanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-histidine residue
annotated property: has_exact_synonym
annotated target: 2-azanyl-3-(1H-imidazol-5-yl)propanoic acid [tautomer]
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-histidine residue
annotated property: has_exact_synonym
annotated target: 4-(2-amino-2-carboxyethyl)imidazole
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-histidine residue
annotated property: has_exact_synonym
annotated target: His
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-histidine residue
annotated property: has_exact_synonym
annotated target: L-histidine
has_synonym_type: Name from RESID

Axiom
annotated source: L-histidine residue
annotated property: has_exact_synonym
annotated target: alpha-amino-beta-(4-imidazole)propionic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-histidine residue
annotated property: has_exact_synonym
annotated target: glyoxaline-5-alanine
has_synonym_type: Alternate name from RESID

L-isoleucine residue
type: Class
subclass of: residues isobaric at 113.084064 Da
subclass of: MOD_01441
definition: A protein modification that effectively converts a source amino acid residue to an L-isoleucine.
diff avg: 0.0
diff formula: C 0 H 0 N 0 O 0
diff mono: 0.0
formula: C 6 H 11 N 1 O 1
mass avg: 113.16
mass mono: 113.08406
origin: I
source: natural
has_exact_synonym: (2S,3S)-2-amino-3-methylpentanoic acid
has_exact_synonym: 2-azanyl-3-methylpentanoic acid
has_exact_synonym: 3-methyl-norvaline
has_exact_synonym: Ile
has_exact_synonym: Isoleucyl
has_exact_synonym: L-erythro-isoleucine
has_exact_synonym: L-isoleucine
has_exact_synonym: alpha-amino-beta-methylvaleric acid
has_obo_namespace: PSI-MOD
id: MOD:00019
in_subset: PSI-MOD-slim

Axiom
annotated source: L-isoleucine residue
annotated property: definition
annotated target: A protein modification that effectively converts a source amino acid residue to an L-isoleucine.
database_cross_reference: ChEBI:30009
database_cross_reference: DeltaMass:0
database_cross_reference: PubMed:6692818
database_cross_reference: RESID:AA0010

Axiom
annotated source: L-isoleucine residue
annotated property: has_exact_synonym
annotated target: (2S,3S)-2-amino-3-methylpentanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-isoleucine residue
annotated property: has_exact_synonym
annotated target: 2-azanyl-3-methylpentanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-isoleucine residue
annotated property: has_exact_synonym
annotated target: 3-methyl-norvaline
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-isoleucine residue
annotated property: has_exact_synonym
annotated target: Ile
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-isoleucine residue
annotated property: has_exact_synonym
annotated target: Isoleucyl
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: L-isoleucine residue
annotated property: has_exact_synonym
annotated target: L-erythro-isoleucine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-isoleucine residue
annotated property: has_exact_synonym
annotated target: L-isoleucine
has_synonym_type: Name from RESID

Axiom
annotated source: L-isoleucine residue
annotated property: has_exact_synonym
annotated target: alpha-amino-beta-methylvaleric acid
has_synonym_type: Alternate name from RESID

L-leucine residue
type: Class
subclass of: residues isobaric at 113.084064 Da
subclass of: MOD_01441
definition: A protein modification that effectively converts a source amino acid residue to an L-leucine.
diff avg: 0.0
diff formula: C 0 H 0 N 0 O 0
diff mono: 0.0
formula: C 6 H 11 N 1 O 1
mass avg: 113.16
mass mono: 113.08406
origin: L
source: natural
has_exact_synonym: (2S)-2-amino-4-methylpentanoic acid
has_exact_synonym: 2-azanyl-4-methylpentanoic acid
has_exact_synonym: 4-methyl-norvaline
has_exact_synonym: L-leucine
has_exact_synonym: Leu
has_exact_synonym: alpha-amino-gamma-methylvaleric acid
has_exact_synonym: alpha-aminoisocaproic acid
has_obo_namespace: PSI-MOD
id: MOD:00020
in_subset: PSI-MOD-slim

Axiom
annotated source: L-leucine residue
annotated property: definition
annotated target: A protein modification that effectively converts a source amino acid residue to an L-leucine.
database_cross_reference: ChEBI:30006
database_cross_reference: DeltaMass:0
database_cross_reference: PubMed:11478885
database_cross_reference: PubMed:6692818
database_cross_reference: RESID:AA0011

Axiom
annotated source: L-leucine residue
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-4-methylpentanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-leucine residue
annotated property: has_exact_synonym
annotated target: 2-azanyl-4-methylpentanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-leucine residue
annotated property: has_exact_synonym
annotated target: 4-methyl-norvaline
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-leucine residue
annotated property: has_exact_synonym
annotated target: L-leucine
has_synonym_type: Name from RESID

Axiom
annotated source: L-leucine residue
annotated property: has_exact_synonym
annotated target: Leu
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-leucine residue
annotated property: has_exact_synonym
annotated target: alpha-amino-gamma-methylvaleric acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-leucine residue
annotated property: has_exact_synonym
annotated target: alpha-aminoisocaproic acid
has_synonym_type: Alternate name from RESID

L-lysine residue
type: Class
subclass of: MOD_00893
subclass of: MOD_01441
definition: A protein modification that effectively converts a source amino acid residue to L-lysine.
diff avg: 0.0
diff formula: C 0 H 0 N 0 O 0
diff mono: 0.0
formula: C 6 H 12 N 2 O 1
mass avg: 128.18
mass mono: 128.09496
origin: K
source: natural
has_exact_synonym: (2S)-2,6-diaminohexanoic acid
has_exact_synonym: 2,6-bis(azanyl)hexanoic acid
has_exact_synonym: 6-amino-L-norleucine
has_exact_synonym: ACT_SITE Schiff-base intermediate with substrate
has_exact_synonym: L-lysine
has_exact_synonym: Lys
has_exact_synonym: alpha,epsilon-diaminocaproic acid
has_obo_namespace: PSI-MOD
id: MOD:00021
in_subset: PSI-MOD-slim

Axiom
annotated source: L-lysine residue
annotated property: definition
annotated target: A protein modification that effectively converts a source amino acid residue to L-lysine.
database_cross_reference: ChEBI:29967
database_cross_reference: DeltaMass:0
database_cross_reference: PubMed:3106962
database_cross_reference: PubMed:6120171
database_cross_reference: PubMed:6692818
database_cross_reference: RESID:AA0012

Axiom
annotated source: L-lysine residue
annotated property: has_exact_synonym
annotated target: (2S)-2,6-diaminohexanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-lysine residue
annotated property: has_exact_synonym
annotated target: 2,6-bis(azanyl)hexanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-lysine residue
annotated property: has_exact_synonym
annotated target: 6-amino-L-norleucine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-lysine residue
annotated property: has_exact_synonym
annotated target: ACT_SITE Schiff-base intermediate with substrate
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-lysine residue
annotated property: has_exact_synonym
annotated target: L-lysine
has_synonym_type: Name from RESID

Axiom
annotated source: L-lysine residue
annotated property: has_exact_synonym
annotated target: Lys
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-lysine residue
annotated property: has_exact_synonym
annotated target: alpha,epsilon-diaminocaproic acid
has_synonym_type: Alternate name from RESID

L-methionine residue
type: Class
subclass of: MOD_01441
definition: A protein modification that effectively converts a source amino acid residue to L-methionine.
diff avg: 0.0
diff formula: C 0 H 0 N 0 O 0 S 0
diff mono: 0.0
formula: C 5 H 9 N 1 O 1 S 1
mass avg: 131.19
mass mono: 131.04048
origin: M
source: natural
has_exact_synonym: (2S)-2-amino-4-(methylsulfanyl)butanoic acid
has_exact_synonym: 2-amino-4-(methylthio)butanoic acid
has_exact_synonym: 2-amino-4-(methylthio)butyric acid
has_exact_synonym: 2-azanyl-4-(methylsulfanyl)butanoic acid
has_exact_synonym: L-(-)-methionine
has_exact_synonym: L-methionine
has_exact_synonym: Met
has_exact_synonym: S-methyl-L-homocysteine
has_exact_synonym: alpha-amino-gamma-methylmercaptobutyric acid
has_exact_synonym: alpha-amino-gamma-methylthiobutyric acid
has_exact_synonym: gamma-methylthio-alpha-aminobutyric acid
has_obo_namespace: PSI-MOD
id: MOD:00022
in_subset: PSI-MOD-slim
comment: From DeltaMass: Average Mass: 149

Axiom
annotated source: L-methionine residue
annotated property: definition
annotated target: A protein modification that effectively converts a source amino acid residue to L-methionine.
database_cross_reference: ChEBI:29983
database_cross_reference: DeltaMass:0
database_cross_reference: PubMed:6411710
database_cross_reference: PubMed:6692818
database_cross_reference: RESID:AA0013

Axiom
annotated source: L-methionine residue
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-4-(methylsulfanyl)butanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-methionine residue
annotated property: has_exact_synonym
annotated target: 2-amino-4-(methylthio)butanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-methionine residue
annotated property: has_exact_synonym
annotated target: 2-amino-4-(methylthio)butyric acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-methionine residue
annotated property: has_exact_synonym
annotated target: 2-azanyl-4-(methylsulfanyl)butanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-methionine residue
annotated property: has_exact_synonym
annotated target: L-(-)-methionine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-methionine residue
annotated property: has_exact_synonym
annotated target: L-methionine
has_synonym_type: Name from RESID

Axiom
annotated source: L-methionine residue
annotated property: has_exact_synonym
annotated target: Met
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-methionine residue
annotated property: has_exact_synonym
annotated target: S-methyl-L-homocysteine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-methionine residue
annotated property: has_exact_synonym
annotated target: alpha-amino-gamma-methylmercaptobutyric acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-methionine residue
annotated property: has_exact_synonym
annotated target: alpha-amino-gamma-methylthiobutyric acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-methionine residue
annotated property: has_exact_synonym
annotated target: gamma-methylthio-alpha-aminobutyric acid
has_synonym_type: Alternate name from RESID

L-phenylalanine residue
type: Class
subclass of: MOD_01441
definition: A protein modification that effectively converts a source amino acid residue to L-phenylalanine.
diff avg: 0.0
diff formula: C 0 H 0 N 0 O 0
diff mono: 0.0
formula: C 9 H 9 N 1 O 1
mass avg: 147.18
mass mono: 147.06842
origin: F
source: natural
has_exact_synonym: (2S)-2-amino-3-phenylpropanoic acid
has_exact_synonym: 2-azanyl-3-phenylpropanoic acid
has_exact_synonym: L-phenylalanine
has_exact_synonym: Phe
has_exact_synonym: alpha-amino-beta-phenylpropionic acid
has_obo_namespace: PSI-MOD
id: MOD:00023
in_subset: PSI-MOD-slim

Axiom
annotated source: L-phenylalanine residue
annotated property: definition
annotated target: A protein modification that effectively converts a source amino acid residue to L-phenylalanine.
database_cross_reference: ChEBI:29997
database_cross_reference: DeltaMass:0
database_cross_reference: PubMed:6692818
database_cross_reference: RESID:AA0014

Axiom
annotated source: L-phenylalanine residue
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-3-phenylpropanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-phenylalanine residue
annotated property: has_exact_synonym
annotated target: 2-azanyl-3-phenylpropanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-phenylalanine residue
annotated property: has_exact_synonym
annotated target: L-phenylalanine
has_synonym_type: Name from RESID

Axiom
annotated source: L-phenylalanine residue
annotated property: has_exact_synonym
annotated target: Phe
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-phenylalanine residue
annotated property: has_exact_synonym
annotated target: alpha-amino-beta-phenylpropionic acid
has_synonym_type: Alternate name from RESID

L-proline residue
type: Class
subclass of: MOD_01441
definition: A protein modification that effectively converts a source amino acid residue to L-proline.
diff avg: 0.0
diff formula: C 0 H 0 N 0 O 0
diff mono: 0.0
formula: C 5 H 7 N 1 O 1
mass avg: 97.12
mass mono: 97.052765
origin: P
source: natural
has_exact_synonym: (2S)-2-pyrrolidinecarboxylic acid
has_exact_synonym: L-proline
has_exact_synonym: Pro
has_exact_synonym: pyrrolidine-2-carboxylic acid
has_obo_namespace: PSI-MOD
id: MOD:00024
in_subset: PSI-MOD-slim

Axiom
annotated source: L-proline residue
annotated property: definition
annotated target: A protein modification that effectively converts a source amino acid residue to L-proline.
database_cross_reference: ChEBI:30017
database_cross_reference: DeltaMass:0
database_cross_reference: PubMed:6692818
database_cross_reference: PubMed:8547259
database_cross_reference: RESID:AA0015

Axiom
annotated source: L-proline residue
annotated property: has_exact_synonym
annotated target: (2S)-2-pyrrolidinecarboxylic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-proline residue
annotated property: has_exact_synonym
annotated target: L-proline
has_synonym_type: Name from RESID

Axiom
annotated source: L-proline residue
annotated property: has_exact_synonym
annotated target: Pro
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-proline residue
annotated property: has_exact_synonym
annotated target: pyrrolidine-2-carboxylic acid
has_synonym_type: Alternate name from RESID

L-serine residue
type: Class
subclass of: MOD_01441
definition: A protein modification that effectively converts a source amino acid residue to L-serine.
diff avg: 0.0
diff formula: C 0 H 0 N 0 O 0
diff mono: 0.0
formula: C 3 H 5 N 1 O 2
mass avg: 87.08
mass mono: 87.03203
origin: S
source: natural
has_exact_synonym: (2S)-2-amino-3-hydroxypropanoic acid
has_exact_synonym: 2-azanyl-3-hydroxypropanoic acid
has_exact_synonym: 3-hydroxy-L-alanine
has_exact_synonym: L-serine
has_exact_synonym: Ser
has_exact_synonym: alpha-amino-beta-hydroxypropionic acid
has_exact_synonym: beta-hydroxyalanine
has_obo_namespace: PSI-MOD
id: MOD:00025
in_subset: PSI-MOD-slim

Axiom
annotated source: L-serine residue
annotated property: definition
annotated target: A protein modification that effectively converts a source amino acid residue to L-serine.
database_cross_reference: ChEBI:29999
database_cross_reference: DeltaMass:0
database_cross_reference: PubMed:4399050
database_cross_reference: PubMed:6692818
database_cross_reference: RESID:AA0016

Axiom
annotated source: L-serine residue
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-3-hydroxypropanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-serine residue
annotated property: has_exact_synonym
annotated target: 2-azanyl-3-hydroxypropanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-serine residue
annotated property: has_exact_synonym
annotated target: 3-hydroxy-L-alanine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-serine residue
annotated property: has_exact_synonym
annotated target: L-serine
has_synonym_type: Name from RESID

Axiom
annotated source: L-serine residue
annotated property: has_exact_synonym
annotated target: Ser
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-serine residue
annotated property: has_exact_synonym
annotated target: alpha-amino-beta-hydroxypropionic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-serine residue
annotated property: has_exact_synonym
annotated target: beta-hydroxyalanine
has_synonym_type: Alternate name from RESID

L-threonine residue
type: Class
subclass of: MOD_01441
definition: A protein modification that effectively converts a source amino acid residue to L-threonine.
diff avg: 0.0
diff formula: C 0 H 0 N 0 O 0
diff mono: 0.0
formula: C 4 H 7 N 1 O 2
mass avg: 101.1
mass mono: 101.047676
origin: T
source: natural
has_exact_synonym: (2S,3R)-2-amino-3-hydroxybutanoic acid
has_exact_synonym: 2-azanyl-3-hydroxybutanoic acid
has_exact_synonym: L-threo-threonine
has_exact_synonym: L-threonine
has_exact_synonym: Thr
has_exact_synonym: alpha-amino-beta-hydroxybutyric acid
has_exact_synonym: beta-methylserine
has_obo_namespace: PSI-MOD
id: MOD:00026
in_subset: PSI-MOD-slim

Axiom
annotated source: L-threonine residue
annotated property: definition
annotated target: A protein modification that effectively converts a source amino acid residue to L-threonine.
database_cross_reference: ChEBI:30013
database_cross_reference: DeltaMass:0
database_cross_reference: PubMed:2989287
database_cross_reference: PubMed:6692818
database_cross_reference: RESID:AA0017

Axiom
annotated source: L-threonine residue
annotated property: has_exact_synonym
annotated target: (2S,3R)-2-amino-3-hydroxybutanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-threonine residue
annotated property: has_exact_synonym
annotated target: 2-azanyl-3-hydroxybutanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-threonine residue
annotated property: has_exact_synonym
annotated target: L-threo-threonine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-threonine residue
annotated property: has_exact_synonym
annotated target: L-threonine
has_synonym_type: Name from RESID

Axiom
annotated source: L-threonine residue
annotated property: has_exact_synonym
annotated target: Thr
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-threonine residue
annotated property: has_exact_synonym
annotated target: alpha-amino-beta-hydroxybutyric acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-threonine residue
annotated property: has_exact_synonym
annotated target: beta-methylserine
has_synonym_type: Alternate name from RESID

L-tryptophan residue
type: Class
subclass of: MOD_01441
definition: A protein modification that effectively converts a source amino acid residue to L-tryptophan.
diff avg: 0.0
diff formula: C 0 H 0 N 0 O 0
diff mono: 0.0
formula: C 11 H 10 N 2 O 1
mass avg: 186.21
mass mono: 186.07932
origin: W
source: natural
has_exact_synonym: (2S)-2-amino-3-(1H-indol-3-yl)propanoic acid
has_exact_synonym: 2-azanyl-3-(1H-indol-3-yl)propanoic acid
has_exact_synonym: L-tryptophan
has_exact_synonym: Trp
has_exact_synonym: alpha-amino-beta-(3-indolyl)propionoic acid
has_exact_synonym: beta(3-indolyl)alanine
has_obo_namespace: PSI-MOD
id: MOD:00027
in_subset: PSI-MOD-slim

Axiom
annotated source: L-tryptophan residue
annotated property: definition
annotated target: A protein modification that effectively converts a source amino acid residue to L-tryptophan.
database_cross_reference: ChEBI:29954
database_cross_reference: DeltaMass:0
database_cross_reference: PubMed:2059637
database_cross_reference: PubMed:6692818
database_cross_reference: PubMed:9324768
database_cross_reference: RESID:AA0018

Axiom
annotated source: L-tryptophan residue
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-3-(1H-indol-3-yl)propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-tryptophan residue
annotated property: has_exact_synonym
annotated target: 2-azanyl-3-(1H-indol-3-yl)propanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-tryptophan residue
annotated property: has_exact_synonym
annotated target: L-tryptophan
has_synonym_type: Name from RESID

Axiom
annotated source: L-tryptophan residue
annotated property: has_exact_synonym
annotated target: Trp
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-tryptophan residue
annotated property: has_exact_synonym
annotated target: alpha-amino-beta-(3-indolyl)propionoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-tryptophan residue
annotated property: has_exact_synonym
annotated target: beta(3-indolyl)alanine
has_synonym_type: Alternate name from RESID

L-tyrosine residue
type: Class
subclass of: MOD_01441
definition: A protein modification that effectively converts a source amino acid residue to L-tyrosine.
diff avg: 0.0
diff formula: C 0 H 0 N 0 O 0
diff mono: 0.0
formula: C 9 H 9 N 1 O 2
mass avg: 163.18
mass mono: 163.06332
origin: Y
source: natural
has_exact_synonym: (2S)-2-amino-3-(4-hydoxyphenyl)propanoic acid
has_exact_synonym: 2-azanyl-3-(4-hydoxyphenyl)propanoic acid
has_exact_synonym: L-tyrosine
has_exact_synonym: Tyr
has_exact_synonym: alpha-amino-beta-(para-hydroxyphenyl)propionic acid
has_exact_synonym: p-tyrosine
has_exact_synonym: para-hydroxyphenylalanine
has_obo_namespace: PSI-MOD
id: MOD:00028
in_subset: PSI-MOD-slim

Axiom
annotated source: L-tyrosine residue
annotated property: definition
annotated target: A protein modification that effectively converts a source amino acid residue to L-tyrosine.
database_cross_reference: ChEBI:29975
database_cross_reference: DeltaMass:0
database_cross_reference: PubMed:2190093
database_cross_reference: PubMed:2542938
database_cross_reference: PubMed:5550972
database_cross_reference: PubMed:6061414
database_cross_reference: PubMed:6120171
database_cross_reference: PubMed:6692818
database_cross_reference: RESID:AA0019

Axiom
annotated source: L-tyrosine residue
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-3-(4-hydoxyphenyl)propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-tyrosine residue
annotated property: has_exact_synonym
annotated target: 2-azanyl-3-(4-hydoxyphenyl)propanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-tyrosine residue
annotated property: has_exact_synonym
annotated target: L-tyrosine
has_synonym_type: Name from RESID

Axiom
annotated source: L-tyrosine residue
annotated property: has_exact_synonym
annotated target: Tyr
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-tyrosine residue
annotated property: has_exact_synonym
annotated target: alpha-amino-beta-(para-hydroxyphenyl)propionic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-tyrosine residue
annotated property: has_exact_synonym
annotated target: p-tyrosine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-tyrosine residue
annotated property: has_exact_synonym
annotated target: para-hydroxyphenylalanine
has_synonym_type: Alternate name from RESID

L-valine residue
type: Class
subclass of: MOD_01441
definition: A protein modification that effectively converts a source amino acid residue to an L-valine.
diff avg: 0.0
diff formula: C 0 H 0 N 0 O 0
diff mono: 0.0
formula: C 5 H 9 N 1 O 1
mass avg: 99.13
mass mono: 99.06841
origin: V
source: natural
has_exact_synonym: (2S)-2-amino-3-methylbutanoic acid
has_exact_synonym: 2-azanyl-3-methylbutanoic acid
has_exact_synonym: L-valine
has_exact_synonym: Val
has_exact_synonym: alpha-amino-beta-methylbutyric acid
has_exact_synonym: alpha-aminoisovaleric acid
has_obo_namespace: PSI-MOD
id: MOD:00029
in_subset: PSI-MOD-slim

Axiom
annotated source: L-valine residue
annotated property: definition
annotated target: A protein modification that effectively converts a source amino acid residue to an L-valine.
database_cross_reference: ChEBI:30015
database_cross_reference: DeltaMass:0
database_cross_reference: PubMed:6692818
database_cross_reference: RESID:AA0020

Axiom
annotated source: L-valine residue
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-3-methylbutanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-valine residue
annotated property: has_exact_synonym
annotated target: 2-azanyl-3-methylbutanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-valine residue
annotated property: has_exact_synonym
annotated target: L-valine
has_synonym_type: Name from RESID

Axiom
annotated source: L-valine residue
annotated property: has_exact_synonym
annotated target: Val
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-valine residue
annotated property: has_exact_synonym
annotated target: alpha-amino-beta-methylbutyric acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-valine residue
annotated property: has_exact_synonym
annotated target: alpha-aminoisovaleric acid
has_synonym_type: Alternate name from RESID

N-formyl-L-methionine residue
type: Class
subclass of: MOD_00868
definition: A protein modification that effectively converts a source amino acid residue to an N-formyl-L-methionine, a natural pretranslational modification.
diff avg: 0.0
diff formula: C 0 H 0 N 0 O 0 S 0
diff mono: 0.0
formula: C 6 H 10 N 1 O 2 S 1
mass avg: 160.21
mass mono: 160.04323
origin: M
source: natural
term spec: N-term
has_exact_synonym: (2S)-2-formylamino-4-(methylsulfanyl)butanoic acid
has_exact_synonym: 2-formamido-4-(methylsulfanyl)butanoic acid
has_exact_synonym: 2-formylamino-4-(methylthio)butanoic acid
has_exact_synonym: 2-formylazanyl-4-(methylsulfanyl)butanoic acid
has_exact_synonym: MOD_RES N-formylmethionine
has_exact_synonym: N-formyl-L-methionine
has_exact_synonym: N-formylated L-methionine
has_exact_synonym: fMet
has_exact_synonym: nformylmet
has_obo_namespace: PSI-MOD
has_related_synonym: FormylMet
id: MOD:00030
in_subset: PSI-MOD-slim

Axiom
annotated source: N-formyl-L-methionine residue
annotated property: definition
annotated target: A protein modification that effectively converts a source amino acid residue to an N-formyl-L-methionine, a natural pretranslational modification.
database_cross_reference: ChEBI:33718
database_cross_reference: OMSSA:22
database_cross_reference: PubMed:10825024
database_cross_reference: PubMed:11152118
database_cross_reference: PubMed:2165784
database_cross_reference: PubMed:3042771
database_cross_reference: PubMed:8758896
database_cross_reference: RESID:AA0021#FMET

Axiom
annotated source: N-formyl-L-methionine residue
annotated property: has_exact_synonym
annotated target: (2S)-2-formylamino-4-(methylsulfanyl)butanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N-formyl-L-methionine residue
annotated property: has_exact_synonym
annotated target: 2-formamido-4-(methylsulfanyl)butanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-formyl-L-methionine residue
annotated property: has_exact_synonym
annotated target: 2-formylamino-4-(methylthio)butanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-formyl-L-methionine residue
annotated property: has_exact_synonym
annotated target: 2-formylazanyl-4-(methylsulfanyl)butanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-formyl-L-methionine residue
annotated property: has_exact_synonym
annotated target: MOD_RES N-formylmethionine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N-formyl-L-methionine residue
annotated property: has_exact_synonym
annotated target: N-formyl-L-methionine
has_synonym_type: Name from RESID

Axiom
annotated source: N-formyl-L-methionine residue
annotated property: has_exact_synonym
annotated target: N-formylated L-methionine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: N-formyl-L-methionine residue
annotated property: has_exact_synonym
annotated target: fMet
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: N-formyl-L-methionine residue
annotated property: has_exact_synonym
annotated target: nformylmet
has_synonym_type: Short label from OMSSA

Axiom
annotated source: N-formyl-L-methionine residue
annotated property: has_related_synonym
annotated target: FormylMet
has_synonym_type: Agreed label from MS community

L-selenocysteine residue
type: Class
subclass of: MOD_00745
subclass of: MOD_00859
subclass of: MOD_00868
definition: A protein modification that effectively converts a source amino acid residue to an L-selenocysteine, a natural pretranslational modification.
diff avg: 0.0
diff formula: C 0 H 0 N 0 O 0 Se 0
diff mono: 0.0
formula: C 3 H 5 N 1 O 1 Se 1
mass avg: 150.05
mass mono: 150.95363
origin: U
source: natural
has_exact_synonym: (2R)-2-amino-3-selanylpropanoic acid
has_exact_synonym: 2-azanyl-3-selanylpropanoic acid
has_exact_synonym: 3-selenylalanine
has_exact_synonym: L-selenocysteine
has_exact_synonym: NON_STD Selenocysteine
has_exact_synonym: SeCys
has_exact_synonym: Sec
has_exact_synonym: selenium cysteine
has_obo_namespace: PSI-MOD
id: MOD:00031
in_subset: PSI-MOD-slim

Axiom
annotated source: L-selenocysteine residue
annotated property: definition
annotated target: A protein modification that effectively converts a source amino acid residue to an L-selenocysteine, a natural pretranslational modification.
database_cross_reference: ChEBI:30000
database_cross_reference: PubMed:10523135
database_cross_reference: PubMed:1066676
database_cross_reference: PubMed:2037562
database_cross_reference: PubMed:2963330
database_cross_reference: PubMed:4734725
database_cross_reference: PubMed:6076213
database_cross_reference: PubMed:6217842
database_cross_reference: PubMed:6714945
database_cross_reference: RESID:AA0022

Axiom
annotated source: L-selenocysteine residue
annotated property: has_exact_synonym
annotated target: (2R)-2-amino-3-selanylpropanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-selenocysteine residue
annotated property: has_exact_synonym
annotated target: 2-azanyl-3-selanylpropanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-selenocysteine residue
annotated property: has_exact_synonym
annotated target: 3-selenylalanine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-selenocysteine residue
annotated property: has_exact_synonym
annotated target: L-selenocysteine
has_synonym_type: Name from RESID

Axiom
annotated source: L-selenocysteine residue
annotated property: has_exact_synonym
annotated target: NON_STD Selenocysteine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-selenocysteine residue
annotated property: has_exact_synonym
annotated target: SeCys
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-selenocysteine residue
annotated property: has_exact_synonym
annotated target: Sec
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-selenocysteine residue
annotated property: has_exact_synonym
annotated target: selenium cysteine
has_synonym_type: Alternate name from RESID

uncategorized protein modification
type: Class
subclass of: protein modification
definition: A protein modification that is not chemically categorized.
has_obo_namespace: PSI-MOD
id: MOD:00032
comment: This term is for organizational use only and should not be assigned. [JSG]

Axiom
annotated source: uncategorized protein modification
annotated property: definition
annotated target: A protein modification that is not chemically categorized.
database_cross_reference: PubMed:18688235

crosslinked residues
type: Class
subclass of: MOD_01156
definition: A protein modification that crosslinks two or more amino acid residues with covalent bonds.
has_exact_synonym: XLNK-Res-Res
has_obo_namespace: PSI-MOD
id: MOD:00033
in_subset: PSI-MOD-slim
comment: The covalent bond is formed directly between sidechain atoms. If non-aminoacid atoms are involved in connecting two or more peptide chain residues peptide chain, the connection is classified as a multivalent binding site.

Axiom
annotated source: crosslinked residues
annotated property: definition
annotated target: A protein modification that crosslinks two or more amino acid residues with covalent bonds.
database_cross_reference: PubMed:18688235

Axiom
annotated source: crosslinked residues
annotated property: has_exact_synonym
annotated target: XLNK-Res-Res
has_synonym_type: Short label curated by PSI-MOD

L-cystine (cross-link)
type: Class
subclass of: MOD_00689
definition: A protein modification that effectively cross-links two L-cysteine residues to form L-cystine.
diff avg: -2.02
diff formula: C 0 H -2 N 0 O 0 S 0
diff mono: -2.01565
formula: C 6 H 8 N 2 O 2 S 2
mass avg: 204.26
mass mono: 204.00272
origin: C, C
source: natural
has_exact_synonym: (2R,2'R)-3,3'-disulfane-1,2-diylbis(2-aminopropanoic acid)
has_exact_synonym: 3,3'-disulfane-1,2-diylbis(2-azanylpropanoic acid)
has_exact_synonym: 3,3'-dithiobis(2-aminopropanoic acid)
has_exact_synonym: 3,3'-dithiobisalanine
has_exact_synonym: 3,3'-dithiodialanine
has_exact_synonym: Cys2
has_exact_synonym: Cystine ((Cys)2)
has_exact_synonym: DISULFID
has_exact_synonym: DISULFID Interchain
has_exact_synonym: L-cystine
has_exact_synonym: XLNK-SCys-SCys
has_exact_synonym: beta,beta'-diamino-beta,beta'-dicarboxydiethyldisulfide
has_exact_synonym: beta,beta'-dithiodialanine
has_exact_synonym: bis(alpha-aminopropionic acid)-beta-disulfide
has_exact_synonym: bis(beta-amino-beta-carboxyethyl)disulfide
has_exact_synonym: dicysteine
has_obo_namespace: PSI-MOD
has_related_synonym: 2-amino-3-(2-amino-2-carboxy-ethyl)disulfanyl-propanoic acid
id: MOD:00034
in_subset: PSI-MOD-slim
comment: Cross-link 2; for formation of a disulfide bond between a peptide cysteine and a free cysteine, see MOD:00765.

Axiom
annotated source: L-cystine (cross-link)
annotated property: definition
annotated target: A protein modification that effectively cross-links two L-cysteine residues to form L-cystine.
database_cross_reference: ChEBI:16283
database_cross_reference: DeltaMass:0
database_cross_reference: PubMed:1988019
database_cross_reference: PubMed:2001356
database_cross_reference: PubMed:2076469
database_cross_reference: PubMed:3083866
database_cross_reference: PubMed:366603
database_cross_reference: PubMed:7918467
database_cross_reference: PubMed:8344916
database_cross_reference: RESID:AA0025#CYS2

Axiom
annotated source: L-cystine (cross-link)
annotated property: has_exact_synonym
annotated target: (2R,2'R)-3,3'-disulfane-1,2-diylbis(2-aminopropanoic acid)
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-cystine (cross-link)
annotated property: has_exact_synonym
annotated target: 3,3'-disulfane-1,2-diylbis(2-azanylpropanoic acid)
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cystine (cross-link)
annotated property: has_exact_synonym
annotated target: 3,3'-dithiobis(2-aminopropanoic acid)
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cystine (cross-link)
annotated property: has_exact_synonym
annotated target: 3,3'-dithiobisalanine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cystine (cross-link)
annotated property: has_exact_synonym
annotated target: 3,3'-dithiodialanine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cystine (cross-link)
annotated property: has_exact_synonym
annotated target: Cys2
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-cystine (cross-link)
annotated property: has_exact_synonym
annotated target: Cystine ((Cys)2)
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: L-cystine (cross-link)
annotated property: has_exact_synonym
annotated target: DISULFID
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-cystine (cross-link)
annotated property: has_exact_synonym
annotated target: DISULFID Interchain
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-cystine (cross-link)
annotated property: has_exact_synonym
annotated target: L-cystine
has_synonym_type: Name from RESID

Axiom
annotated source: L-cystine (cross-link)
annotated property: has_exact_synonym
annotated target: XLNK-SCys-SCys
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-cystine (cross-link)
annotated property: has_exact_synonym
annotated target: beta,beta'-diamino-beta,beta'-dicarboxydiethyldisulfide
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cystine (cross-link)
annotated property: has_exact_synonym
annotated target: beta,beta'-dithiodialanine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cystine (cross-link)
annotated property: has_exact_synonym
annotated target: bis(alpha-aminopropionic acid)-beta-disulfide
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cystine (cross-link)
annotated property: has_exact_synonym
annotated target: bis(beta-amino-beta-carboxyethyl)disulfide
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cystine (cross-link)
annotated property: has_exact_synonym
annotated target: dicysteine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cystine (cross-link)
annotated property: has_related_synonym
annotated target: 2-amino-3-(2-amino-2-carboxy-ethyl)disulfanyl-propanoic acid
has_synonym_type: Misnomer tagged alternate name from RESID

(2S,3R)-3-hydroxyasparagine
type: Class
subclass of: MOD_01688
definition: A protein modification that effectively converts an L-asparagine residue to (2S,3R)-3-hydroxyasparagine.
diff avg: 16.0
diff formula: C 0 H 0 N 0 O 1
diff mono: 15.994915
formula: C 4 H 6 N 2 O 3
mass avg: 130.1
mass mono: 130.03784
origin: N
source: natural
database_cross_reference: uniprot.ptm:PTM-0369
has_exact_synonym: (2S,3R)-2,4-diamino-3-hydroxy-4-oxobutanoic acid
has_exact_synonym: (2S,3R)-2-amino-3-hydroxy-4-butanediamic acid
has_exact_synonym: (2S,3R)-3-hydroxyasparagine
has_exact_synonym: (3R)3HyAsn
has_exact_synonym: 2-azanyl-3-hydroxy-4-butanediamic acid
has_exact_synonym: L-erythro-beta-hydroxyasparagine
has_exact_synonym: MOD_RES (3R)-3-hydroxyasparagine
has_exact_synonym: erythro-beta-hydroxylated L-asparagine
has_obo_namespace: PSI-MOD
id: MOD:00035
in_subset: PSI-MOD-slim

Axiom
annotated source: (2S,3R)-3-hydroxyasparagine
annotated property: definition
annotated target: A protein modification that effectively converts an L-asparagine residue to (2S,3R)-3-hydroxyasparagine.
database_cross_reference: ChEBI:141853
database_cross_reference: PubMed:11823643
database_cross_reference: PubMed:2820791
database_cross_reference: RESID:AA0026

Axiom
annotated source: (2S,3R)-3-hydroxyasparagine
annotated property: has_exact_synonym
annotated target: (2S,3R)-2,4-diamino-3-hydroxy-4-oxobutanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: (2S,3R)-3-hydroxyasparagine
annotated property: has_exact_synonym
annotated target: (2S,3R)-2-amino-3-hydroxy-4-butanediamic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: (2S,3R)-3-hydroxyasparagine
annotated property: has_exact_synonym
annotated target: (2S,3R)-3-hydroxyasparagine
has_synonym_type: Name from RESID

Axiom
annotated source: (2S,3R)-3-hydroxyasparagine
annotated property: has_exact_synonym
annotated target: (3R)3HyAsn
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: (2S,3R)-3-hydroxyasparagine
annotated property: has_exact_synonym
annotated target: 2-azanyl-3-hydroxy-4-butanediamic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: (2S,3R)-3-hydroxyasparagine
annotated property: has_exact_synonym
annotated target: L-erythro-beta-hydroxyasparagine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: (2S,3R)-3-hydroxyasparagine
annotated property: has_exact_synonym
annotated target: MOD_RES (3R)-3-hydroxyasparagine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: (2S,3R)-3-hydroxyasparagine
annotated property: has_exact_synonym
annotated target: erythro-beta-hydroxylated L-asparagine
has_synonym_type: Alternate name curated by PSI-MOD

(2S,3R)-3-hydroxyaspartic acid
type: Class
subclass of: MOD_01926
definition: A protein modification that effectively converts an L-aspartic acid residue to (2S,3R)-3-hydroxyaspartic acid.
diff avg: 16.0
diff formula: C 0 H 0 N 0 O 1
diff mono: 15.994915
formula: C 4 H 5 N 1 O 4
mass avg: 131.09
mass mono: 131.02185
origin: D
source: natural
database_cross_reference: Unimod:35
database_cross_reference: uniprot.ptm:PTM-0371
has_exact_synonym: (2S,3R)-2-amino-3-hydroxybutanedioic acid
has_exact_synonym: (2S,3R)-3-hydroxyaspartic acid
has_exact_synonym: (3R)3HyAsp
has_exact_synonym: 2-amino-3-hydroxysuccinic acid
has_exact_synonym: 2-azanyl-3-hydroxybutanedioic acid
has_exact_synonym: 3-hydroxyaspartic acid
has_exact_synonym: L-erythro-beta-hydroxyaspartic acid
has_exact_synonym: MOD_RES (3R)-3-hydroxyaspartate
has_exact_synonym: erythro-beta-hydroxylated L-aspartic acid
has_exact_synonym: hydroxylationd
has_obo_namespace: PSI-MOD
has_related_synonym: Oxidation
id: MOD:00036
in_subset: PSI-MOD-slim

Axiom
annotated source: (2S,3R)-3-hydroxyaspartic acid
annotated property: definition
annotated target: A protein modification that effectively converts an L-aspartic acid residue to (2S,3R)-3-hydroxyaspartic acid.
database_cross_reference: ChEBI:141848
database_cross_reference: OMSSA:59
database_cross_reference: PubMed:6572939
database_cross_reference: PubMed:6871167
database_cross_reference: PubMed:8355279
database_cross_reference: RESID:AA0027
database_cross_reference: Unimod:35#D

Axiom
annotated source: (2S,3R)-3-hydroxyaspartic acid
annotated property: has_exact_synonym
annotated target: (2S,3R)-2-amino-3-hydroxybutanedioic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: (2S,3R)-3-hydroxyaspartic acid
annotated property: has_exact_synonym
annotated target: (2S,3R)-3-hydroxyaspartic acid
has_synonym_type: Name from RESID

Axiom
annotated source: (2S,3R)-3-hydroxyaspartic acid
annotated property: has_exact_synonym
annotated target: (3R)3HyAsp
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: (2S,3R)-3-hydroxyaspartic acid
annotated property: has_exact_synonym
annotated target: 2-amino-3-hydroxysuccinic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: (2S,3R)-3-hydroxyaspartic acid
annotated property: has_exact_synonym
annotated target: 2-azanyl-3-hydroxybutanedioic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: (2S,3R)-3-hydroxyaspartic acid
annotated property: has_exact_synonym
annotated target: 3-hydroxyaspartic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: (2S,3R)-3-hydroxyaspartic acid
annotated property: has_exact_synonym
annotated target: L-erythro-beta-hydroxyaspartic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: (2S,3R)-3-hydroxyaspartic acid
annotated property: has_exact_synonym
annotated target: MOD_RES (3R)-3-hydroxyaspartate
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: (2S,3R)-3-hydroxyaspartic acid
annotated property: has_exact_synonym
annotated target: erythro-beta-hydroxylated L-aspartic acid
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: (2S,3R)-3-hydroxyaspartic acid
annotated property: has_exact_synonym
annotated target: hydroxylationd
has_synonym_type: Short label from OMSSA

Axiom
annotated source: (2S,3R)-3-hydroxyaspartic acid
annotated property: has_related_synonym
annotated target: Oxidation
has_synonym_type: Agreed label from MS community

5-hydroxy-L-lysine
type: Class
subclass of: MOD_01047
definition: A protein modification that effectively converts an L-lysine residue to one of the diastereomeric 5-hydroxy-L-lysine residues.
diff avg: 16.0
diff formula: C 0 H 0 N 0 O 1
diff mono: 15.994915
formula: C 6 H 12 N 2 O 2
mass avg: 144.17
mass mono: 144.08987
origin: K
source: natural
database_cross_reference: uniprot.ptm:PTM-0044
has_exact_synonym: 5-hydroxylated L-lysine
has_exact_synonym: 5HyLys
has_obo_namespace: PSI-MOD
id: MOD:00037
in_subset: PSI-MOD-slim

Axiom
annotated source: 5-hydroxy-L-lysine
annotated property: definition
annotated target: A protein modification that effectively converts an L-lysine residue to one of the diastereomeric 5-hydroxy-L-lysine residues.
database_cross_reference: ChEBI:60175
database_cross_reference: PubMed:18688235

Axiom
annotated source: 5-hydroxy-L-lysine
annotated property: has_exact_synonym
annotated target: 5-hydroxylated L-lysine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: 5-hydroxy-L-lysine
annotated property: has_exact_synonym
annotated target: 5HyLys
has_synonym_type: Short label curated by PSI-MOD

3-hydroxy-L-proline
type: Class
subclass of: MOD_01024
definition: A protein modification that effectively converts an L-proline residue to 3-hydroxy-L-proline.
diff avg: 16.0
diff formula: C 0 H 0 N 0 O 1
diff mono: 15.994915
formula: C 5 H 7 N 1 O 2
mass avg: 113.12
mass mono: 113.047676
origin: P
source: natural
database_cross_reference: uniprot.ptm:PTM-0030
has_exact_synonym: (2S,3S)-3-hydroxypyrrolidine-2-carboxylic acid
has_exact_synonym: 3-hydroxy-L-proline
has_exact_synonym: 3-hydroxylated L-proline
has_exact_synonym: 3-trans-hydroxy-L-proline
has_exact_synonym: 3HyPro
has_exact_synonym: L-threo-3-hydroxyproline
has_exact_synonym: MOD_RES 3-hydroxyproline
has_exact_synonym: beta-hydroxypyrrolidine-alpha-carboxylic acid
has_obo_namespace: PSI-MOD
id: MOD:00038
in_subset: PSI-MOD-slim

Axiom
annotated source: 3-hydroxy-L-proline
annotated property: definition
annotated target: A protein modification that effectively converts an L-proline residue to 3-hydroxy-L-proline.
database_cross_reference: ChEBI:16889
database_cross_reference: PubMed:2400108
database_cross_reference: PubMed:3734192
database_cross_reference: PubMed:4343807
database_cross_reference: RESID:AA0029

Axiom
annotated source: 3-hydroxy-L-proline
annotated property: has_exact_synonym
annotated target: (2S,3S)-3-hydroxypyrrolidine-2-carboxylic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: 3-hydroxy-L-proline
annotated property: has_exact_synonym
annotated target: 3-hydroxy-L-proline
has_synonym_type: Name from RESID

Axiom
annotated source: 3-hydroxy-L-proline
annotated property: has_exact_synonym
annotated target: 3-hydroxylated L-proline
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: 3-hydroxy-L-proline
annotated property: has_exact_synonym
annotated target: 3-trans-hydroxy-L-proline
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 3-hydroxy-L-proline
annotated property: has_exact_synonym
annotated target: 3HyPro
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: 3-hydroxy-L-proline
annotated property: has_exact_synonym
annotated target: L-threo-3-hydroxyproline
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 3-hydroxy-L-proline
annotated property: has_exact_synonym
annotated target: MOD_RES 3-hydroxyproline
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: 3-hydroxy-L-proline
annotated property: has_exact_synonym
annotated target: beta-hydroxypyrrolidine-alpha-carboxylic acid
has_synonym_type: Alternate name from RESID

4-hydroxy-L-proline
type: Class
subclass of: MOD_01024
definition: A protein modification that effectively converts an L-proline residue to 4-hydroxy-L-proline
diff avg: 16.0
diff formula: C 0 H 0 N 0 O 1
diff mono: 15.994915
formula: C 5 H 7 N 1 O 2
mass avg: 113.12
mass mono: 113.047676
origin: P
source: natural
database_cross_reference: uniprot.ptm:PTM-0043
has_exact_synonym: (2S,4R)-4-hydroxypyrrolidine-2-carboxylic acid
has_exact_synonym: 4-hydroxy-L-proline
has_exact_synonym: 4-hydroxylated L-proline
has_exact_synonym: 4-hydroxyproline
has_exact_synonym: 4-trans-hydroxy-L-proline
has_exact_synonym: 4HyPro
has_exact_synonym: L-threo-4-hydroxyproline
has_exact_synonym: MOD_RES 4-hydroxyproline
has_exact_synonym: gamma-hydroxypyrrolidine-alpha-carboxylic acid
has_obo_namespace: PSI-MOD
id: MOD:00039
in_subset: PSI-MOD-slim

Axiom
annotated source: 4-hydroxy-L-proline
annotated property: definition
annotated target: A protein modification that effectively converts an L-proline residue to 4-hydroxy-L-proline
database_cross_reference: ChEBI:18095
database_cross_reference: PubMed:11292863
database_cross_reference: PubMed:2400108
database_cross_reference: PubMed:3734192
database_cross_reference: RESID:AA0030

Axiom
annotated source: 4-hydroxy-L-proline
annotated property: has_exact_synonym
annotated target: (2S,4R)-4-hydroxypyrrolidine-2-carboxylic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: 4-hydroxy-L-proline
annotated property: has_exact_synonym
annotated target: 4-hydroxy-L-proline
has_synonym_type: Name from RESID

Axiom
annotated source: 4-hydroxy-L-proline
annotated property: has_exact_synonym
annotated target: 4-hydroxylated L-proline
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: 4-hydroxy-L-proline
annotated property: has_exact_synonym
annotated target: 4-hydroxyproline
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 4-hydroxy-L-proline
annotated property: has_exact_synonym
annotated target: 4-trans-hydroxy-L-proline
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 4-hydroxy-L-proline
annotated property: has_exact_synonym
annotated target: 4HyPro
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: 4-hydroxy-L-proline
annotated property: has_exact_synonym
annotated target: L-threo-4-hydroxyproline
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 4-hydroxy-L-proline
annotated property: has_exact_synonym
annotated target: MOD_RES 4-hydroxyproline
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: 4-hydroxy-L-proline
annotated property: has_exact_synonym
annotated target: gamma-hydroxypyrrolidine-alpha-carboxylic acid
has_synonym_type: Alternate name from RESID

2-pyrrolidone-5-carboxylic acid (Gln)
type: Class
subclass of: MOD_00907
subclass of: MOD_01048
subclass of: MOD_01160
definition: A protein modification that effectively converts an L-glutamine residue to 2-pyrrolidone-5-carboxylic acid.
diff avg: -17.03
diff formula: C 0 H -3 N -1 O 0
diff mono: -17.026548
formula: C 5 H 6 N 1 O 2
mass avg: 112.11
mass mono: 112.039856
origin: Q
source: natural
term spec: N-term
database_cross_reference: Unimod:28
database_cross_reference: uniprot.ptm:PTM-0261
has_exact_synonym: (2S)-5-oxo-2-pyrrolidinecarboxylic acid
has_exact_synonym: 2-oxopyrrolidine-5-carboxylic acid
has_exact_synonym: 2-pyrrolidone-5-carboxylic acid
has_exact_synonym: 5-oxoproline
has_exact_synonym: 5-oxopyrrolidine-2-carboxylic acid
has_exact_synonym: 5-pyrrolidone-2-carboxylic acid
has_exact_synonym: MOD_RES Pyrrolidone carboxylic acid
has_exact_synonym: N-pyrrolidone carboxyl (N terminus)
has_exact_synonym: PCA
has_exact_synonym: PyrGlu(Gln)
has_exact_synonym: Pyroglutamic Acid formed from Gln
has_exact_synonym: Pyroglutamyl
has_exact_synonym: ntermpeppyroq
has_exact_synonym: pyroglutamic acid
has_obo_namespace: PSI-MOD
has_related_synonym: Gln->pyro-Glu
has_related_synonym: Pyro-glu from Q
id: MOD:00040
in_subset: PSI-MOD-slim
comment: DeltaMass gives a formula C 5 H 5 N 1 O 2 with mass 111.1

Axiom
annotated source: 2-pyrrolidone-5-carboxylic acid (Gln)
annotated property: definition
annotated target: A protein modification that effectively converts an L-glutamine residue to 2-pyrrolidone-5-carboxylic acid.
database_cross_reference: ChEBI:30652
database_cross_reference: DeltaMass:123
database_cross_reference: OMSSA:110
database_cross_reference: PubMed:10214721
database_cross_reference: PubMed:1836357
database_cross_reference: PubMed:26343
database_cross_reference: PubMed:3473473
database_cross_reference: RESID:AA0031#GLN
database_cross_reference: Unimod:28#Q

Axiom
annotated source: 2-pyrrolidone-5-carboxylic acid (Gln)
annotated property: has_exact_synonym
annotated target: (2S)-5-oxo-2-pyrrolidinecarboxylic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: 2-pyrrolidone-5-carboxylic acid (Gln)
annotated property: has_exact_synonym
annotated target: 2-oxopyrrolidine-5-carboxylic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 2-pyrrolidone-5-carboxylic acid (Gln)
annotated property: has_exact_synonym
annotated target: 2-pyrrolidone-5-carboxylic acid
has_synonym_type: Name from RESID

Axiom
annotated source: 2-pyrrolidone-5-carboxylic acid (Gln)
annotated property: has_exact_synonym
annotated target: 5-oxoproline
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 2-pyrrolidone-5-carboxylic acid (Gln)
annotated property: has_exact_synonym
annotated target: 5-oxopyrrolidine-2-carboxylic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 2-pyrrolidone-5-carboxylic acid (Gln)
annotated property: has_exact_synonym
annotated target: 5-pyrrolidone-2-carboxylic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 2-pyrrolidone-5-carboxylic acid (Gln)
annotated property: has_exact_synonym
annotated target: MOD_RES Pyrrolidone carboxylic acid
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: 2-pyrrolidone-5-carboxylic acid (Gln)
annotated property: has_exact_synonym
annotated target: N-pyrrolidone carboxyl (N terminus)
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: 2-pyrrolidone-5-carboxylic acid (Gln)
annotated property: has_exact_synonym
annotated target: PCA
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 2-pyrrolidone-5-carboxylic acid (Gln)
annotated property: has_exact_synonym
annotated target: PyrGlu(Gln)
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: 2-pyrrolidone-5-carboxylic acid (Gln)
annotated property: has_exact_synonym
annotated target: Pyroglutamic Acid formed from Gln
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: 2-pyrrolidone-5-carboxylic acid (Gln)
annotated property: has_exact_synonym
annotated target: Pyroglutamyl
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: 2-pyrrolidone-5-carboxylic acid (Gln)
annotated property: has_exact_synonym
annotated target: ntermpeppyroq
has_synonym_type: Short label from OMSSA

Axiom
annotated source: 2-pyrrolidone-5-carboxylic acid (Gln)
annotated property: has_exact_synonym
annotated target: pyroglutamic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 2-pyrrolidone-5-carboxylic acid (Gln)
annotated property: has_related_synonym
annotated target: Gln->pyro-Glu
has_synonym_type: Agreed label from MS community

Axiom
annotated source: 2-pyrrolidone-5-carboxylic acid (Gln)
annotated property: has_related_synonym
annotated target: Pyro-glu from Q
has_synonym_type: Description (full_name) from Unimod

L-gamma-carboxyglutamic acid
type: Class
subclass of: MOD_00906
subclass of: MOD_01152
definition: A protein modification that effectively converts an L-glutamic acid residue to L-gamma-carboxyglutamic acid.
diff avg: 44.01
diff formula: C 1 H 0 N 0 O 2
diff mono: 43.98983
formula: C 6 H 7 N 1 O 5
mass avg: 173.12
mass mono: 173.03242
origin: E
source: natural
database_cross_reference: Unimod:299
database_cross_reference: uniprot.ptm:PTM-0039
has_exact_synonym: (3S)-3-aminopropane-1,1,3-tricarboxylic acid
has_exact_synonym: (3S)-3-azanylpropane-1,1,3-tricarboxylic acid
has_exact_synonym: 3-amino-1,1,3-propanetricarboxylic acid
has_exact_synonym: 3-azanylpropane-1,1,3-tricarboxylic acid
has_exact_synonym: 4-carboxyglutamic acid
has_exact_synonym: 4CbxGlu
has_exact_synonym: Carboxy Glutamyl
has_exact_synonym: L-gamma-carboxyglutamic acid
has_exact_synonym: MOD_RES 4-carboxyglutamate
has_exact_synonym: gamma-carboxylated L-glutamic acid
has_exact_synonym: gammacarboxyle
has_obo_namespace: PSI-MOD
has_related_synonym: 1-carboxyglutamic acid
has_related_synonym: Carboxy
has_related_synonym: Carboxylation
id: MOD:00041
in_subset: PSI-MOD-slim
comment: DeltaMass has an incorrect formula C 6 H 7 N 5 O 1 (N and O reversed) with mass 173.

Axiom
annotated source: L-gamma-carboxyglutamic acid
annotated property: definition
annotated target: A protein modification that effectively converts an L-glutamic acid residue to L-gamma-carboxyglutamic acid.
database_cross_reference: DeltaMass:217
database_cross_reference: OMSSA:48
database_cross_reference: PubMed:10517147
database_cross_reference: PubMed:1807167
database_cross_reference: PubMed:3263814
database_cross_reference: PubMed:4528109
database_cross_reference: PubMed:7457858
database_cross_reference: PubMed:8135347
database_cross_reference: PubMed:8868490
database_cross_reference: PubMed:9188685
database_cross_reference: RESID:AA0032
database_cross_reference: Unimod:299#E

Axiom
annotated source: L-gamma-carboxyglutamic acid
annotated property: has_exact_synonym
annotated target: (3S)-3-aminopropane-1,1,3-tricarboxylic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-gamma-carboxyglutamic acid
annotated property: has_exact_synonym
annotated target: (3S)-3-azanylpropane-1,1,3-tricarboxylic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-gamma-carboxyglutamic acid
annotated property: has_exact_synonym
annotated target: 3-amino-1,1,3-propanetricarboxylic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-gamma-carboxyglutamic acid
annotated property: has_exact_synonym
annotated target: 3-azanylpropane-1,1,3-tricarboxylic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-gamma-carboxyglutamic acid
annotated property: has_exact_synonym
annotated target: 4-carboxyglutamic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-gamma-carboxyglutamic acid
annotated property: has_exact_synonym
annotated target: 4CbxGlu
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-gamma-carboxyglutamic acid
annotated property: has_exact_synonym
annotated target: Carboxy Glutamyl
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: L-gamma-carboxyglutamic acid
annotated property: has_exact_synonym
annotated target: L-gamma-carboxyglutamic acid
has_synonym_type: Name from RESID

Axiom
annotated source: L-gamma-carboxyglutamic acid
annotated property: has_exact_synonym
annotated target: MOD_RES 4-carboxyglutamate
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-gamma-carboxyglutamic acid
annotated property: has_exact_synonym
annotated target: gamma-carboxylated L-glutamic acid
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: L-gamma-carboxyglutamic acid
annotated property: has_exact_synonym
annotated target: gammacarboxyle
has_synonym_type: Short label from OMSSA

Axiom
annotated source: L-gamma-carboxyglutamic acid
annotated property: has_related_synonym
annotated target: 1-carboxyglutamic acid
has_synonym_type: Misnomer tagged alternate name from RESID

Axiom
annotated source: L-gamma-carboxyglutamic acid
annotated property: has_related_synonym
annotated target: Carboxy
has_synonym_type: Agreed label from MS community

Axiom
annotated source: L-gamma-carboxyglutamic acid
annotated property: has_related_synonym
annotated target: Carboxy
has_synonym_type: Interim label from Unimod

Axiom
annotated source: L-gamma-carboxyglutamic acid
annotated property: has_related_synonym
annotated target: Carboxylation
has_synonym_type: Description (full_name) from Unimod

L-aspartic 4-phosphoric anhydride
type: Class
subclass of: MOD_00904
subclass of: MOD_01455
definition: A protein modification that effectively converts an L-aspartic acid residue to L-aspartic 4-phosphoric anhydride.
diff avg: 79.98
diff formula: C 0 H 1 N 0 O 3 P 1
diff mono: 79.96633
formula: C 4 H 6 N 1 O 6 P 1
mass avg: 195.07
mass mono: 194.99327
origin: D
source: natural
database_cross_reference: Unimod:21
database_cross_reference: uniprot.ptm:PTM-0038
has_exact_synonym: (2S)-2-amino-4-oxo-4-(phosphonooxy)butanoic acid
has_exact_synonym: 2-aminobutanedioic 4-phosphoric anhydride
has_exact_synonym: 2-azanyl-4-oxo-4-(phosphonooxy)butanoic acid
has_exact_synonym: 4-oxo-O-phosphono-L-homoserine
has_exact_synonym: 4-phosphoaspartic acid
has_exact_synonym: 4-phosphorylated L-aspartatic acid
has_exact_synonym: ACT_SITE 4-aspartylphosphate intermediate
has_exact_synonym: L-aspartic 4-phosphoric anhydride
has_exact_synonym: MOD_RES 4-aspartylphosphate
has_exact_synonym: PAsp
has_exact_synonym: beta-aspartyl phosphate
has_obo_namespace: PSI-MOD
has_related_synonym: Phospho
has_related_synonym: Phosphorylation
id: MOD:00042

Axiom
annotated source: L-aspartic 4-phosphoric anhydride
annotated property: definition
annotated target: A protein modification that effectively converts an L-aspartic acid residue to L-aspartic 4-phosphoric anhydride.
database_cross_reference: ChEBI:15836
database_cross_reference: PubMed:4357737
database_cross_reference: RESID:AA0033
database_cross_reference: Unimod:21#D

Axiom
annotated source: L-aspartic 4-phosphoric anhydride
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-4-oxo-4-(phosphonooxy)butanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-aspartic 4-phosphoric anhydride
annotated property: has_exact_synonym
annotated target: 2-aminobutanedioic 4-phosphoric anhydride
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-aspartic 4-phosphoric anhydride
annotated property: has_exact_synonym
annotated target: 2-azanyl-4-oxo-4-(phosphonooxy)butanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-aspartic 4-phosphoric anhydride
annotated property: has_exact_synonym
annotated target: 4-oxo-O-phosphono-L-homoserine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-aspartic 4-phosphoric anhydride
annotated property: has_exact_synonym
annotated target: 4-phosphoaspartic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-aspartic 4-phosphoric anhydride
annotated property: has_exact_synonym
annotated target: 4-phosphorylated L-aspartatic acid
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: L-aspartic 4-phosphoric anhydride
annotated property: has_exact_synonym
annotated target: ACT_SITE 4-aspartylphosphate intermediate
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-aspartic 4-phosphoric anhydride
annotated property: has_exact_synonym
annotated target: L-aspartic 4-phosphoric anhydride
has_synonym_type: Name from RESID

Axiom
annotated source: L-aspartic 4-phosphoric anhydride
annotated property: has_exact_synonym
annotated target: MOD_RES 4-aspartylphosphate
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-aspartic 4-phosphoric anhydride
annotated property: has_exact_synonym
annotated target: PAsp
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-aspartic 4-phosphoric anhydride
annotated property: has_exact_synonym
annotated target: beta-aspartyl phosphate
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-aspartic 4-phosphoric anhydride
annotated property: has_related_synonym
annotated target: Phospho
has_synonym_type: Agreed label from MS community

Axiom
annotated source: L-aspartic 4-phosphoric anhydride
annotated property: has_related_synonym
annotated target: Phosphorylation
has_synonym_type: Description (full_name) from Unimod

S-phospho-L-cysteine
type: Class
subclass of: MOD_00696
subclass of: MOD_00777
subclass of: MOD_00905
definition: A protein modification that effectively converts an L-cysteine residue to S-phospho-L-cysteine.
diff avg: 79.98
diff formula: C 0 H 1 N 0 O 3 P 1 S 0
diff mono: 79.96633
formula: C 3 H 6 N 1 O 4 P 1 S 1
mass avg: 183.12
mass mono: 182.97551
origin: C
source: natural
database_cross_reference: Unimod:21
database_cross_reference: uniprot.ptm:PTM-0251
has_exact_synonym: (2R)-2-amino-3-(phosphonosulfanyl)propanoic acid
has_exact_synonym: 2-azanyl-3-(phosphonosulfanyl)propanoic acid
has_exact_synonym: ACT_SITE Phosphocysteine intermediate
has_exact_synonym: MOD_RES Phosphocysteine
has_exact_synonym: PCys
has_exact_synonym: S-phospho-L-cysteine
has_exact_synonym: S-phosphonocysteine
has_exact_synonym: S-phosphorylated L-cysteine
has_exact_synonym: S3-phosphocysteine
has_exact_synonym: cysteine phosphate thioester
has_obo_namespace: PSI-MOD
has_related_synonym: Phospho
has_related_synonym: Phosphorylation
id: MOD:00043

Axiom
annotated source: S-phospho-L-cysteine
annotated property: definition
annotated target: A protein modification that effectively converts an L-cysteine residue to S-phospho-L-cysteine.
database_cross_reference: PubMed:3142516
database_cross_reference: PubMed:7961745
database_cross_reference: PubMed:8128219
database_cross_reference: RESID:AA0034
database_cross_reference: Unimod:21#C

Axiom
annotated source: S-phospho-L-cysteine
annotated property: has_exact_synonym
annotated target: (2R)-2-amino-3-(phosphonosulfanyl)propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: S-phospho-L-cysteine
annotated property: has_exact_synonym
annotated target: 2-azanyl-3-(phosphonosulfanyl)propanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-phospho-L-cysteine
annotated property: has_exact_synonym
annotated target: ACT_SITE Phosphocysteine intermediate
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: S-phospho-L-cysteine
annotated property: has_exact_synonym
annotated target: MOD_RES Phosphocysteine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: S-phospho-L-cysteine
annotated property: has_exact_synonym
annotated target: PCys
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: S-phospho-L-cysteine
annotated property: has_exact_synonym
annotated target: S-phospho-L-cysteine
has_synonym_type: Name from RESID

Axiom
annotated source: S-phospho-L-cysteine
annotated property: has_exact_synonym
annotated target: S-phosphonocysteine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-phospho-L-cysteine
annotated property: has_exact_synonym
annotated target: S-phosphorylated L-cysteine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: S-phospho-L-cysteine
annotated property: has_exact_synonym
annotated target: S3-phosphocysteine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-phospho-L-cysteine
annotated property: has_exact_synonym
annotated target: cysteine phosphate thioester
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-phospho-L-cysteine
annotated property: has_related_synonym
annotated target: Phospho
has_synonym_type: Agreed label from MS community

Axiom
annotated source: S-phospho-L-cysteine
annotated property: has_related_synonym
annotated target: Phosphorylation
has_synonym_type: Description (full_name) from Unimod

1'-phospho-L-histidine
type: Class
subclass of: MOD_00890
definition: A protein modification that effectively converts an L-histidine residue to tele-phospho-L-histidine (N-tau-phospho-L-histidine, 1'-phospho-L-histidine).
diff avg: 79.98
diff formula: C 0 H 1 N 0 O 3 P 1
diff mono: 79.96633
formula: C 6 H 8 N 3 O 4 P 1
mass avg: 217.12
mass mono: 217.02524
origin: H
source: natural
database_cross_reference: uniprot.ptm:PTM-0325
has_exact_synonym: (2S)-2-amino-3-(1-phosphono-1H-imidazol-4-yl)propanoic acid
has_exact_synonym: 1'-phospho-L-histidine
has_exact_synonym: 2-azanyl-3-(1-phosphono-1H-imidazol-4-yl)propanoic acid
has_exact_synonym: ACT_SITE Tele-phosphohistidine intermediate
has_exact_synonym: MOD_RES Tele-phosphohistidine
has_exact_synonym: N(tau)-phosphohistidine
has_exact_synonym: N1-phosphonohistidine
has_exact_synonym: NE2-phosphonohistidine
has_exact_synonym: NtPHis
has_exact_synonym: Ntau-phosphorylated L-histidine
has_exact_synonym: histidine-N(epsilon)-phosphate
has_exact_synonym: histidine-N1'-phosphate
has_exact_synonym: tele-phosphohistidine
has_obo_namespace: PSI-MOD
has_related_synonym: Phospho
has_related_synonym: Phosphorylation
has_related_synonym: histidine-3-phosphate
id: MOD:00044
in_subset: PSI-MOD-slim

Axiom
annotated source: 1'-phospho-L-histidine
annotated property: definition
annotated target: A protein modification that effectively converts an L-histidine residue to tele-phospho-L-histidine (N-tau-phospho-L-histidine, 1'-phospho-L-histidine).
database_cross_reference: PubMed:11038361
database_cross_reference: PubMed:5642389
database_cross_reference: PubMed:6692818
database_cross_reference: RESID:AA0035

Axiom
annotated source: 1'-phospho-L-histidine
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-3-(1-phosphono-1H-imidazol-4-yl)propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: 1'-phospho-L-histidine
annotated property: has_exact_synonym
annotated target: 1'-phospho-L-histidine
has_synonym_type: Name from RESID

Axiom
annotated source: 1'-phospho-L-histidine
annotated property: has_exact_synonym
annotated target: 2-azanyl-3-(1-phosphono-1H-imidazol-4-yl)propanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 1'-phospho-L-histidine
annotated property: has_exact_synonym
annotated target: ACT_SITE Tele-phosphohistidine intermediate
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: 1'-phospho-L-histidine
annotated property: has_exact_synonym
annotated target: MOD_RES Tele-phosphohistidine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: 1'-phospho-L-histidine
annotated property: has_exact_synonym
annotated target: N(tau)-phosphohistidine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 1'-phospho-L-histidine
annotated property: has_exact_synonym
annotated target: N1-phosphonohistidine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 1'-phospho-L-histidine
annotated property: has_exact_synonym
annotated target: NE2-phosphonohistidine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 1'-phospho-L-histidine
annotated property: has_exact_synonym
annotated target: NtPHis
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: 1'-phospho-L-histidine
annotated property: has_exact_synonym
annotated target: Ntau-phosphorylated L-histidine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: 1'-phospho-L-histidine
annotated property: has_exact_synonym
annotated target: histidine-N(epsilon)-phosphate
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 1'-phospho-L-histidine
annotated property: has_exact_synonym
annotated target: histidine-N1'-phosphate
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 1'-phospho-L-histidine
annotated property: has_exact_synonym
annotated target: tele-phosphohistidine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 1'-phospho-L-histidine
annotated property: has_related_synonym
annotated target: Phospho
has_synonym_type: Agreed label from MS community

Axiom
annotated source: 1'-phospho-L-histidine
annotated property: has_related_synonym
annotated target: Phosphorylation
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: 1'-phospho-L-histidine
annotated property: has_related_synonym
annotated target: histidine-3-phosphate
has_synonym_type: Misnomer tagged alternate name from RESID

3'-phospho-L-histidine
type: Class
subclass of: MOD_00890
definition: A protein modification that effectively converts an L-histidine residue to pros-phospho-L-histidine (N-pi-phospho-L-histidine, 3'-phospho-L-histidine).
diff avg: 79.98
diff formula: C 0 H 1 N 0 O 3 P 1
diff mono: 79.96633
formula: C 6 H 8 N 3 O 4 P 1
mass avg: 217.12
mass mono: 217.02524
origin: H
source: natural
database_cross_reference: uniprot.ptm:PTM-0260
has_exact_synonym: (2S)-2-amino-3-(3-phosphono-3H-imidazol-4-yl)propanoic acid
has_exact_synonym: 2-azanyl-3-(3-phosphono-3H-imidazol-4-yl)propanoic acid
has_exact_synonym: 3'-phospho-L-histidine
has_exact_synonym: ACT_SITE Pros-phosphohistidine intermediate
has_exact_synonym: MOD_RES Pros-phosphohistidine
has_exact_synonym: N(pi)-phosphohistidine
has_exact_synonym: N3-phosphonohistidine
has_exact_synonym: ND1-phosphonohistidine
has_exact_synonym: NpPHis
has_exact_synonym: Npi-phosphorylated L-histidine
has_exact_synonym: histidine-N(delta)-phosphate
has_exact_synonym: histidine-N3'-phosphate
has_exact_synonym: pros-phosphohistidine
has_obo_namespace: PSI-MOD
has_related_synonym: Phospho
has_related_synonym: Phosphorylation
has_related_synonym: histidine-1-phosphate
id: MOD:00045
in_subset: PSI-MOD-slim

Axiom
annotated source: 3'-phospho-L-histidine
annotated property: definition
annotated target: A protein modification that effectively converts an L-histidine residue to pros-phospho-L-histidine (N-pi-phospho-L-histidine, 3'-phospho-L-histidine).
database_cross_reference: PubMed:1549615
database_cross_reference: PubMed:5642389
database_cross_reference: PubMed:6692818
database_cross_reference: PubMed:7669763
database_cross_reference: PubMed:7803390
database_cross_reference: RESID:AA0036

Axiom
annotated source: 3'-phospho-L-histidine
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-3-(3-phosphono-3H-imidazol-4-yl)propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: 3'-phospho-L-histidine
annotated property: has_exact_synonym
annotated target: 2-azanyl-3-(3-phosphono-3H-imidazol-4-yl)propanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 3'-phospho-L-histidine
annotated property: has_exact_synonym
annotated target: 3'-phospho-L-histidine
has_synonym_type: Name from RESID

Axiom
annotated source: 3'-phospho-L-histidine
annotated property: has_exact_synonym
annotated target: ACT_SITE Pros-phosphohistidine intermediate
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: 3'-phospho-L-histidine
annotated property: has_exact_synonym
annotated target: MOD_RES Pros-phosphohistidine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: 3'-phospho-L-histidine
annotated property: has_exact_synonym
annotated target: N(pi)-phosphohistidine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 3'-phospho-L-histidine
annotated property: has_exact_synonym
annotated target: N3-phosphonohistidine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 3'-phospho-L-histidine
annotated property: has_exact_synonym
annotated target: ND1-phosphonohistidine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 3'-phospho-L-histidine
annotated property: has_exact_synonym
annotated target: NpPHis
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: 3'-phospho-L-histidine
annotated property: has_exact_synonym
annotated target: Npi-phosphorylated L-histidine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: 3'-phospho-L-histidine
annotated property: has_exact_synonym
annotated target: histidine-N(delta)-phosphate
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 3'-phospho-L-histidine
annotated property: has_exact_synonym
annotated target: histidine-N3'-phosphate
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 3'-phospho-L-histidine
annotated property: has_exact_synonym
annotated target: pros-phosphohistidine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 3'-phospho-L-histidine
annotated property: has_related_synonym
annotated target: Phospho
has_synonym_type: Agreed label from MS community

Axiom
annotated source: 3'-phospho-L-histidine
annotated property: has_related_synonym
annotated target: Phosphorylation
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: 3'-phospho-L-histidine
annotated property: has_related_synonym
annotated target: histidine-1-phosphate
has_synonym_type: Misnomer tagged alternate name from RESID

O-phospho-L-serine
type: Class
subclass of: MOD_00771
subclass of: MOD_00916
subclass of: MOD_01455
definition: A protein modification that effectively converts an L-serine residue to O-phospho-L-serine.
diff avg: 79.98
diff formula: C 0 H 1 N 0 O 3 P 1
diff mono: 79.96633
formula: C 3 H 6 N 1 O 5 P 1
mass avg: 167.06
mass mono: 166.99835
origin: S
source: natural
database_cross_reference: Unimod:21
database_cross_reference: uniprot.ptm:PTM-0253
has_exact_synonym: (2S)-2-amino-3-(phosphonooxy)propanoic acid
has_exact_synonym: 2-amino-3-hydroxypropanoic acid 3-phosphate
has_exact_synonym: 2-azanyl-3-(phosphonooxy)propanoic acid
has_exact_synonym: ACT_SITE Phosphoserine intermediate
has_exact_synonym: MOD_RES Phosphoserine
has_exact_synonym: O-phospho-L-serine
has_exact_synonym: O-phosphonoserine
has_exact_synonym: O-phosphorylated L-serine
has_exact_synonym: O3-phosphoserine
has_exact_synonym: OPSer
has_exact_synonym: Phospho Seryl
has_exact_synonym: phosphorylations
has_exact_synonym: serine phosphate ester
has_obo_namespace: PSI-MOD
has_related_synonym: Phospho
has_related_synonym: Phosphorylation
id: MOD:00046
in_subset: PSI-MOD-slim

Axiom
annotated source: O-phospho-L-serine
annotated property: definition
annotated target: A protein modification that effectively converts an L-serine residue to O-phospho-L-serine.
database_cross_reference: ChEBI:15811
database_cross_reference: DeltaMass:0
database_cross_reference: OMSSA:6
database_cross_reference: PubMed:12923550
database_cross_reference: PubMed:4065410
database_cross_reference: PubMed:8061611
database_cross_reference: RESID:AA0037
database_cross_reference: Unimod:21#S

Axiom
annotated source: O-phospho-L-serine
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-3-(phosphonooxy)propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: O-phospho-L-serine
annotated property: has_exact_synonym
annotated target: 2-amino-3-hydroxypropanoic acid 3-phosphate
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-phospho-L-serine
annotated property: has_exact_synonym
annotated target: 2-azanyl-3-(phosphonooxy)propanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-phospho-L-serine
annotated property: has_exact_synonym
annotated target: ACT_SITE Phosphoserine intermediate
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: O-phospho-L-serine
annotated property: has_exact_synonym
annotated target: MOD_RES Phosphoserine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: O-phospho-L-serine
annotated property: has_exact_synonym
annotated target: O-phospho-L-serine
has_synonym_type: Name from RESID

Axiom
annotated source: O-phospho-L-serine
annotated property: has_exact_synonym
annotated target: O-phosphonoserine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-phospho-L-serine
annotated property: has_exact_synonym
annotated target: O-phosphorylated L-serine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: O-phospho-L-serine
annotated property: has_exact_synonym
annotated target: O3-phosphoserine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-phospho-L-serine
annotated property: has_exact_synonym
annotated target: OPSer
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: O-phospho-L-serine
annotated property: has_exact_synonym
annotated target: Phospho Seryl
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: O-phospho-L-serine
annotated property: has_exact_synonym
annotated target: phosphorylations
has_synonym_type: Short label from OMSSA

Axiom
annotated source: O-phospho-L-serine
annotated property: has_exact_synonym
annotated target: serine phosphate ester
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-phospho-L-serine
annotated property: has_related_synonym
annotated target: Phospho
has_synonym_type: Agreed label from MS community

Axiom
annotated source: O-phospho-L-serine
annotated property: has_related_synonym
annotated target: Phosphorylation
has_synonym_type: Description (full_name) from Unimod

O-phospho-L-threonine
type: Class
subclass of: MOD_00773
subclass of: MOD_00917
subclass of: MOD_01455
definition: A protein modification that effectively converts an L-threonine residue to O-phospho-L-threonine.
diff avg: 79.98
diff formula: C 0 H 1 N 0 O 3 P 1
diff mono: 79.96633
formula: C 4 H 8 N 1 O 5 P 1
mass avg: 181.08
mass mono: 181.014
origin: T
source: natural
database_cross_reference: Unimod:21
database_cross_reference: uniprot.ptm:PTM-0254
has_exact_synonym: (2S,3R)-2-amino-3-(phosphonooxy)butanoic acid
has_exact_synonym: 2-amino-3-hydroxybutanoic acid 3-phosphate
has_exact_synonym: 2-azanyl-3-(phosphonooxy)butanoic acid
has_exact_synonym: MOD_RES Phosphothreonine
has_exact_synonym: O-phospho-L-threonine
has_exact_synonym: O-phosphorylated L-threonine
has_exact_synonym: O3-phosphothreonine
has_exact_synonym: OPThr
has_exact_synonym: Phospho Threonyl
has_exact_synonym: phosphorylationt
has_exact_synonym: threonine phosphate ester
has_obo_namespace: PSI-MOD
has_related_synonym: Phospho
has_related_synonym: Phosphorylation
id: MOD:00047
in_subset: PSI-MOD-slim

Axiom
annotated source: O-phospho-L-threonine
annotated property: definition
annotated target: A protein modification that effectively converts an L-threonine residue to O-phospho-L-threonine.
database_cross_reference: ChEBI:21967
database_cross_reference: DeltaMass:0
database_cross_reference: OMSSA:7
database_cross_reference: PubMed:12923550
database_cross_reference: PubMed:7678926
database_cross_reference: RESID:AA0038
database_cross_reference: Unimod:21#T

Axiom
annotated source: O-phospho-L-threonine
annotated property: has_exact_synonym
annotated target: (2S,3R)-2-amino-3-(phosphonooxy)butanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: O-phospho-L-threonine
annotated property: has_exact_synonym
annotated target: 2-amino-3-hydroxybutanoic acid 3-phosphate
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-phospho-L-threonine
annotated property: has_exact_synonym
annotated target: 2-azanyl-3-(phosphonooxy)butanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-phospho-L-threonine
annotated property: has_exact_synonym
annotated target: MOD_RES Phosphothreonine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: O-phospho-L-threonine
annotated property: has_exact_synonym
annotated target: O-phospho-L-threonine
has_synonym_type: Name from RESID

Axiom
annotated source: O-phospho-L-threonine
annotated property: has_exact_synonym
annotated target: O-phosphorylated L-threonine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: O-phospho-L-threonine
annotated property: has_exact_synonym
annotated target: O3-phosphothreonine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-phospho-L-threonine
annotated property: has_exact_synonym
annotated target: OPThr
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: O-phospho-L-threonine
annotated property: has_exact_synonym
annotated target: Phospho Threonyl
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: O-phospho-L-threonine
annotated property: has_exact_synonym
annotated target: phosphorylationt
has_synonym_type: Short label from OMSSA

Axiom
annotated source: O-phospho-L-threonine
annotated property: has_exact_synonym
annotated target: threonine phosphate ester
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-phospho-L-threonine
annotated property: has_related_synonym
annotated target: Phospho
has_synonym_type: Agreed label from MS community

Axiom
annotated source: O-phospho-L-threonine
annotated property: has_related_synonym
annotated target: Phosphorylation
has_synonym_type: Description (full_name) from Unimod

O4'-phospho-L-tyrosine
type: Class
subclass of: MOD_00774
subclass of: MOD_00919
subclass of: MOD_01455
definition: A protein modification that effectively converts an L-tyrosine residue to O4'-phospho-L-tyrosine.
diff avg: 79.98
diff formula: C 0 H 1 N 0 O 3 P 1
diff mono: 79.96633
formula: C 9 H 10 N 1 O 5 P 1
mass avg: 243.15
mass mono: 243.02966
origin: Y
source: natural
database_cross_reference: Unimod:21
database_cross_reference: uniprot.ptm:PTM-0255
has_exact_synonym: (2S)-2-amino-3-(4-phosphonooxyphenyl)propanoic acid
has_exact_synonym: 2-amino-3-(4-hydroxyphenyl)propanoic acid 4'-phosphate
has_exact_synonym: 2-azanyl-3-(4-phosphonooxyphenyl)propanoic acid
has_exact_synonym: MOD_RES Phosphotyrosine
has_exact_synonym: O4'-phospho-L-tyrosine
has_exact_synonym: O4'-phosphorylated L-tyrosine
has_exact_synonym: O4-phosphotyrosine
has_exact_synonym: OPTyr
has_exact_synonym: Phospho Tyrosinyl
has_exact_synonym: phosphorylationy
has_exact_synonym: tyrosine phosphate
has_obo_namespace: PSI-MOD
has_related_synonym: Phospho
has_related_synonym: Phosphorylation
id: MOD:00048
in_subset: PSI-MOD-slim

Axiom
annotated source: O4'-phospho-L-tyrosine
annotated property: definition
annotated target: A protein modification that effectively converts an L-tyrosine residue to O4'-phospho-L-tyrosine.
database_cross_reference: DeltaMass:0
database_cross_reference: OMSSA:8
database_cross_reference: PubMed:10226369
database_cross_reference: PubMed:1725475
database_cross_reference: RESID:AA0039
database_cross_reference: Unimod:21#Y

Axiom
annotated source: O4'-phospho-L-tyrosine
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-3-(4-phosphonooxyphenyl)propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: O4'-phospho-L-tyrosine
annotated property: has_exact_synonym
annotated target: 2-amino-3-(4-hydroxyphenyl)propanoic acid 4'-phosphate
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O4'-phospho-L-tyrosine
annotated property: has_exact_synonym
annotated target: 2-azanyl-3-(4-phosphonooxyphenyl)propanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O4'-phospho-L-tyrosine
annotated property: has_exact_synonym
annotated target: MOD_RES Phosphotyrosine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: O4'-phospho-L-tyrosine
annotated property: has_exact_synonym
annotated target: O4'-phospho-L-tyrosine
has_synonym_type: Name from RESID

Axiom
annotated source: O4'-phospho-L-tyrosine
annotated property: has_exact_synonym
annotated target: O4'-phosphorylated L-tyrosine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: O4'-phospho-L-tyrosine
annotated property: has_exact_synonym
annotated target: O4-phosphotyrosine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O4'-phospho-L-tyrosine
annotated property: has_exact_synonym
annotated target: OPTyr
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: O4'-phospho-L-tyrosine
annotated property: has_exact_synonym
annotated target: Phospho Tyrosinyl
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: O4'-phospho-L-tyrosine
annotated property: has_exact_synonym
annotated target: phosphorylationy
has_synonym_type: Short label from OMSSA

Axiom
annotated source: O4'-phospho-L-tyrosine
annotated property: has_exact_synonym
annotated target: tyrosine phosphate
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O4'-phospho-L-tyrosine
annotated property: has_related_synonym
annotated target: Phospho
has_synonym_type: Agreed label from MS community

Axiom
annotated source: O4'-phospho-L-tyrosine
annotated property: has_related_synonym
annotated target: Phosphorylation
has_synonym_type: Description (full_name) from Unimod

2'-[3-carboxamido-3-(trimethylammonio)propyl]-L-histidine
type: Class
subclass of: MOD_00909
definition: A protein modification that effectively converts an L-histidine residue to diphthamide.
diff avg: 143.21
diff formula: C 7 H 15 N 2 O 1
diff mono: 143.11789
formal charge: 1+
formula: C 13 H 22 N 5 O 2
mass avg: 280.35
mass mono: 280.1768
origin: H
source: natural
database_cross_reference: Unimod:375
database_cross_reference: uniprot.ptm:PTM-0118
has_exact_synonym: (2R)-1-amino-4-(4-[(2S)-2-amino-2-carboxyethyl]-1H-imidazol-2-yl)-N,N,N-trimethyl-1-oxobutan-2-aminium
has_exact_synonym: (3-[4-(2-amino-2-carboxy-ethyl)-1H-imidazol-2-yl]-1-carbamoyl-propyl)-trimethylammonium
has_exact_synonym: 1-azanyl-4-(4-[2-azanyl-2-carboxyethyl]-1H-imidazol-2-yl)-N,N,N-trimethyl-1-oxobutan-2-azanium
has_exact_synonym: 2'-[3-carboxamido-3-(trimethylammonio)propyl]-L-histidine
has_exact_synonym: 2-[(R)-3-carboxamido-3-(trimethylammonio)propyl]-4-((S)-2-amino-2-carboxyethyl)-1H-imidazole
has_exact_synonym: 2-[3-carboxamido-3-(trimethylammonio)propyl]histidine
has_exact_synonym: 2-amino-3-2-(3-amino-3-carbamoyl-prop-1-enyl)-1,1,3-trimethyl-2,3-dihydroimidazol-5-ylpropanoic acid
has_exact_synonym: 2-amino-4-5-(2-amino-2-carboxylato-ethyl)-1,1,3-trimethyl-2,3-dihydroimidazol-2-ylbut-3-enamide
has_exact_synonym: Diphth
has_exact_synonym: MOD_RES Diphthamide
has_exact_synonym: alpha-(aminocarbonyl)-4-(2-amino-2-carboxyethyl)-N,N,N-trimethyl-1H-imidazole-2-propanaminium
has_exact_synonym: diphthamide
has_exact_synonym: diphthamide (from histidine)
has_obo_namespace: PSI-MOD
has_related_synonym: Diphthamide
id: MOD:00049

Axiom
annotated source: 2'-[3-carboxamido-3-(trimethylammonio)propyl]-L-histidine
annotated property: definition
annotated target: A protein modification that effectively converts an L-histidine residue to diphthamide.
database_cross_reference: ChEBI:16692
database_cross_reference: DeltaMass:122
database_cross_reference: PubMed:15316019
database_cross_reference: PubMed:7430147
database_cross_reference: RESID:AA0040
database_cross_reference: Unimod:375#H

Axiom
annotated source: 2'-[3-carboxamido-3-(trimethylammonio)propyl]-L-histidine
annotated property: has_exact_synonym
annotated target: (2R)-1-amino-4-(4-[(2S)-2-amino-2-carboxyethyl]-1H-imidazol-2-yl)-N,N,N-trimethyl-1-oxobutan-2-aminium
has_synonym_type: Systematic name from RESID

Axiom
annotated source: 2'-[3-carboxamido-3-(trimethylammonio)propyl]-L-histidine
annotated property: has_exact_synonym
annotated target: (3-[4-(2-amino-2-carboxy-ethyl)-1H-imidazol-2-yl]-1-carbamoyl-propyl)-trimethylammonium
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 2'-[3-carboxamido-3-(trimethylammonio)propyl]-L-histidine
annotated property: has_exact_synonym
annotated target: 1-azanyl-4-(4-[2-azanyl-2-carboxyethyl]-1H-imidazol-2-yl)-N,N,N-trimethyl-1-oxobutan-2-azanium
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 2'-[3-carboxamido-3-(trimethylammonio)propyl]-L-histidine
annotated property: has_exact_synonym
annotated target: 2'-[3-carboxamido-3-(trimethylammonio)propyl]-L-histidine
has_synonym_type: Name from RESID

Axiom
annotated source: 2'-[3-carboxamido-3-(trimethylammonio)propyl]-L-histidine
annotated property: has_exact_synonym
annotated target: 2-[(R)-3-carboxamido-3-(trimethylammonio)propyl]-4-((S)-2-amino-2-carboxyethyl)-1H-imidazole
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 2'-[3-carboxamido-3-(trimethylammonio)propyl]-L-histidine
annotated property: has_exact_synonym
annotated target: 2-[3-carboxamido-3-(trimethylammonio)propyl]histidine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 2'-[3-carboxamido-3-(trimethylammonio)propyl]-L-histidine
annotated property: has_exact_synonym
annotated target: 2-amino-3-2-(3-amino-3-carbamoyl-prop-1-enyl)-1,1,3-trimethyl-2,3-dihydroimidazol-5-ylpropanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 2'-[3-carboxamido-3-(trimethylammonio)propyl]-L-histidine
annotated property: has_exact_synonym
annotated target: 2-amino-4-5-(2-amino-2-carboxylato-ethyl)-1,1,3-trimethyl-2,3-dihydroimidazol-2-ylbut-3-enamide
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 2'-[3-carboxamido-3-(trimethylammonio)propyl]-L-histidine
annotated property: has_exact_synonym
annotated target: Diphth
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: 2'-[3-carboxamido-3-(trimethylammonio)propyl]-L-histidine
annotated property: has_exact_synonym
annotated target: MOD_RES Diphthamide
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: 2'-[3-carboxamido-3-(trimethylammonio)propyl]-L-histidine
annotated property: has_exact_synonym
annotated target: alpha-(aminocarbonyl)-4-(2-amino-2-carboxyethyl)-N,N,N-trimethyl-1H-imidazole-2-propanaminium
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 2'-[3-carboxamido-3-(trimethylammonio)propyl]-L-histidine
annotated property: has_exact_synonym
annotated target: diphthamide
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 2'-[3-carboxamido-3-(trimethylammonio)propyl]-L-histidine
annotated property: has_exact_synonym
annotated target: diphthamide (from histidine)
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: 2'-[3-carboxamido-3-(trimethylammonio)propyl]-L-histidine
annotated property: has_related_synonym
annotated target: Diphthamide
has_synonym_type: Agreed label from MS community

Axiom
annotated source: 2'-[3-carboxamido-3-(trimethylammonio)propyl]-L-histidine
annotated property: has_related_synonym
annotated target: Diphthamide
has_synonym_type: Description (full_name) from Unimod

N-acetyl-L-alanine
type: Class
subclass of: MOD_00901
subclass of: MOD_01458
definition: A protein modification that effectively converts an L-alanine residue to N-acetyl-L-alanine.
diff avg: 42.04
diff formula: C 2 H 2 N 0 O 1
diff mono: 42.010567
formula: C 5 H 8 N 1 O 2
mass avg: 114.12
mass mono: 114.055504
origin: A
source: natural
term spec: N-term
database_cross_reference: uniprot.ptm:PTM-0199
has_exact_synonym: (2S)-2-(acetamido)propanoic acid
has_exact_synonym: 2-(acetylamino)propanoic acid
has_exact_synonym: 2-(acetylazanyl)propanoic acid
has_exact_synonym: AcAla
has_exact_synonym: MOD_RES N-acetylalanine
has_exact_synonym: N-acetyl-L-alanine
has_exact_synonym: N-acetylated L-alanine
has_exact_synonym: acetylalanine
has_obo_namespace: PSI-MOD
id: MOD:00050
in_subset: PSI-MOD-slim

Axiom
annotated source: N-acetyl-L-alanine
annotated property: definition
annotated target: A protein modification that effectively converts an L-alanine residue to N-acetyl-L-alanine.
database_cross_reference: PubMed:363452
database_cross_reference: PubMed:4700463
database_cross_reference: RESID:AA0041

Axiom
annotated source: N-acetyl-L-alanine
annotated property: has_exact_synonym
annotated target: (2S)-2-(acetamido)propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N-acetyl-L-alanine
annotated property: has_exact_synonym
annotated target: 2-(acetylamino)propanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-acetyl-L-alanine
annotated property: has_exact_synonym
annotated target: 2-(acetylazanyl)propanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-acetyl-L-alanine
annotated property: has_exact_synonym
annotated target: AcAla
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: N-acetyl-L-alanine
annotated property: has_exact_synonym
annotated target: MOD_RES N-acetylalanine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N-acetyl-L-alanine
annotated property: has_exact_synonym
annotated target: N-acetyl-L-alanine
has_synonym_type: Name from RESID

Axiom
annotated source: N-acetyl-L-alanine
annotated property: has_exact_synonym
annotated target: N-acetylated L-alanine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: N-acetyl-L-alanine
annotated property: has_exact_synonym
annotated target: acetylalanine
has_synonym_type: Alternate name from RESID

N-acetyl-L-aspartic acid
type: Class
subclass of: MOD_00904
subclass of: MOD_01458
definition: A protein modification that effectively converts an L-aspartic acid residue to N-acetyl-L-aspartic acid.
diff avg: 42.04
diff formula: C 2 H 2 N 0 O 1
diff mono: 42.010567
formula: C 6 H 8 N 1 O 4
mass avg: 158.13
mass mono: 158.04533
origin: D
source: natural
term spec: N-term
database_cross_reference: uniprot.ptm:PTM-0200
has_exact_synonym: (2S)-2-(acetamido)butanedioic acid
has_exact_synonym: 2-(acetylamino)butanedioic acid
has_exact_synonym: 2-(acetylazanyl)butanedioic acid
has_exact_synonym: AcAsp
has_exact_synonym: MOD_RES N-acetylaspartate
has_exact_synonym: N-acetyl-L-aspartic acid
has_exact_synonym: N-acetylated L-aspartic acid
has_exact_synonym: acetylaspartic acid
has_obo_namespace: PSI-MOD
id: MOD:00051
in_subset: PSI-MOD-slim

Axiom
annotated source: N-acetyl-L-aspartic acid
annotated property: definition
annotated target: A protein modification that effectively converts an L-aspartic acid residue to N-acetyl-L-aspartic acid.
database_cross_reference: ChEBI:21547
database_cross_reference: PubMed:1560020
database_cross_reference: PubMed:2395459
database_cross_reference: RESID:AA0042

Axiom
annotated source: N-acetyl-L-aspartic acid
annotated property: has_exact_synonym
annotated target: (2S)-2-(acetamido)butanedioic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N-acetyl-L-aspartic acid
annotated property: has_exact_synonym
annotated target: 2-(acetylamino)butanedioic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-acetyl-L-aspartic acid
annotated property: has_exact_synonym
annotated target: 2-(acetylazanyl)butanedioic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-acetyl-L-aspartic acid
annotated property: has_exact_synonym
annotated target: AcAsp
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: N-acetyl-L-aspartic acid
annotated property: has_exact_synonym
annotated target: MOD_RES N-acetylaspartate
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N-acetyl-L-aspartic acid
annotated property: has_exact_synonym
annotated target: N-acetyl-L-aspartic acid
has_synonym_type: Name from RESID

Axiom
annotated source: N-acetyl-L-aspartic acid
annotated property: has_exact_synonym
annotated target: N-acetylated L-aspartic acid
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: N-acetyl-L-aspartic acid
annotated property: has_exact_synonym
annotated target: acetylaspartic acid
has_synonym_type: Alternate name from RESID

N-acetyl-L-cysteine
type: Class
subclass of: monoacetylated L-cysteine
subclass of: MOD_01458
definition: A protein modification that effectively converts an L-cysteine residue to N-acetyl-L-cysteine.
diff avg: 42.04
diff formula: C 2 H 2 N 0 O 1 S 0
diff mono: 42.010567
formula: C 5 H 8 N 1 O 2 S 1
mass avg: 146.18
mass mono: 146.02757
origin: C
source: natural
term spec: N-term
database_cross_reference: uniprot.ptm:PTM-0201
has_exact_synonym: (2R)-2-acetamido-3-sulfanylpropanoic acid
has_exact_synonym: 2-acetylamino-3-mercaptopropanoic acid
has_exact_synonym: 2-acetylamino-3-sulfanylpropanoic acid
has_exact_synonym: 2-acetylazanyl-3-sulfanylpropanoic acid
has_exact_synonym: MOD_RES N-acetylcysteine
has_exact_synonym: N-acetyl-L-cysteine
has_exact_synonym: N-acetylated cysteine
has_exact_synonym: N-acetylcysteine
has_exact_synonym: NAcCys
has_obo_namespace: PSI-MOD
has_related_synonym: Acetyl
id: MOD:00052
in_subset: PSI-MOD-slim
comment: incidental to RESID:AA0223

Axiom
annotated source: N-acetyl-L-cysteine
annotated property: definition
annotated target: A protein modification that effectively converts an L-cysteine residue to N-acetyl-L-cysteine.
database_cross_reference: ChEBI:28939
database_cross_reference: PubMed:11857757
database_cross_reference: PubMed:11999733
database_cross_reference: PubMed:12175151
database_cross_reference: PubMed:14730666
database_cross_reference: PubMed:1500421
database_cross_reference: PubMed:15350136
database_cross_reference: PubMed:6725286
database_cross_reference: RESID:AA0043

Axiom
annotated source: N-acetyl-L-cysteine
annotated property: has_exact_synonym
annotated target: (2R)-2-acetamido-3-sulfanylpropanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N-acetyl-L-cysteine
annotated property: has_exact_synonym
annotated target: 2-acetylamino-3-mercaptopropanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-acetyl-L-cysteine
annotated property: has_exact_synonym
annotated target: 2-acetylamino-3-sulfanylpropanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-acetyl-L-cysteine
annotated property: has_exact_synonym
annotated target: 2-acetylazanyl-3-sulfanylpropanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-acetyl-L-cysteine
annotated property: has_exact_synonym
annotated target: MOD_RES N-acetylcysteine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N-acetyl-L-cysteine
annotated property: has_exact_synonym
annotated target: N-acetyl-L-cysteine
has_synonym_type: Name from RESID

Axiom
annotated source: N-acetyl-L-cysteine
annotated property: has_exact_synonym
annotated target: N-acetylated cysteine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: N-acetyl-L-cysteine
annotated property: has_exact_synonym
annotated target: N-acetylcysteine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-acetyl-L-cysteine
annotated property: has_exact_synonym
annotated target: NAcCys
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: N-acetyl-L-cysteine
annotated property: has_related_synonym
annotated target: Acetyl
has_synonym_type: Agreed label from MS community

N-acetyl-L-glutamic acid
type: Class
subclass of: MOD_00906
subclass of: MOD_01458
definition: A protein modification that effectively converts an L-glutamic acid residue to N-acetyl-L-glutamic acid.
diff avg: 42.04
diff formula: C 2 H 2 N 0 O 1
diff mono: 42.010567
formula: C 7 H 10 N 1 O 4
mass avg: 172.16
mass mono: 172.06099
origin: E
source: natural
term spec: N-term
database_cross_reference: uniprot.ptm:PTM-0202
has_exact_synonym: (2S)-2-(acetamido)pentanedioic acid
has_exact_synonym: 2-(acetylamino)pentanedioic acid
has_exact_synonym: 2-(acetylazanyl)pentanedioic acid
has_exact_synonym: AcGlu
has_exact_synonym: MOD_RES N-acetylglutamate
has_exact_synonym: N-acetyl-L-glutamic acid
has_exact_synonym: N-acetylated L-glutamic acid
has_exact_synonym: acetylglutamic acid
has_obo_namespace: PSI-MOD
id: MOD:00053
in_subset: PSI-MOD-slim

Axiom
annotated source: N-acetyl-L-glutamic acid
annotated property: definition
annotated target: A protein modification that effectively converts an L-glutamic acid residue to N-acetyl-L-glutamic acid.
database_cross_reference: ChEBI:17533
database_cross_reference: PubMed:6725286
database_cross_reference: RESID:AA0044

Axiom
annotated source: N-acetyl-L-glutamic acid
annotated property: has_exact_synonym
annotated target: (2S)-2-(acetamido)pentanedioic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N-acetyl-L-glutamic acid
annotated property: has_exact_synonym
annotated target: 2-(acetylamino)pentanedioic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-acetyl-L-glutamic acid
annotated property: has_exact_synonym
annotated target: 2-(acetylazanyl)pentanedioic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-acetyl-L-glutamic acid
annotated property: has_exact_synonym
annotated target: AcGlu
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: N-acetyl-L-glutamic acid
annotated property: has_exact_synonym
annotated target: MOD_RES N-acetylglutamate
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N-acetyl-L-glutamic acid
annotated property: has_exact_synonym
annotated target: N-acetyl-L-glutamic acid
has_synonym_type: Name from RESID

Axiom
annotated source: N-acetyl-L-glutamic acid
annotated property: has_exact_synonym
annotated target: N-acetylated L-glutamic acid
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: N-acetyl-L-glutamic acid
annotated property: has_exact_synonym
annotated target: acetylglutamic acid
has_synonym_type: Alternate name from RESID

N-acetyl-L-glutamine
type: Class
subclass of: MOD_00907
subclass of: MOD_01458
definition: A protein modification that effectively converts an L-glutamine residue to N-acetyl-L-glutamine.
diff avg: 42.04
diff formula: C 2 H 2 N 0 O 1
diff mono: 42.010567
formula: C 7 H 11 N 2 O 3
mass avg: 171.18
mass mono: 171.07697
origin: Q
source: artifact
term spec: N-term
has_exact_synonym: (2S)-2-acetamido-5-pentanediamic acid
has_exact_synonym: 2-acetylamino-5-amino-5-oxopentanoic acid
has_exact_synonym: 2-acetylamino-5-pentanediamic acid
has_exact_synonym: 2-acetylazanyl-5-azanyl-5-oxopentanoic acid
has_exact_synonym: AcGln
has_exact_synonym: N-acetyl-L-glutamine
has_exact_synonym: N-acetylated L-glutamine
has_exact_synonym: acetylglutamine
has_obo_namespace: PSI-MOD
id: MOD:00054
comment: This is a deprecated entry in RESID. It probably does not occur naturally [JSG].

Axiom
annotated source: N-acetyl-L-glutamine
annotated property: definition
annotated target: A protein modification that effectively converts an L-glutamine residue to N-acetyl-L-glutamine.
database_cross_reference: RESID:AA0045

Axiom
annotated source: N-acetyl-L-glutamine
annotated property: has_exact_synonym
annotated target: (2S)-2-acetamido-5-pentanediamic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N-acetyl-L-glutamine
annotated property: has_exact_synonym
annotated target: 2-acetylamino-5-amino-5-oxopentanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-acetyl-L-glutamine
annotated property: has_exact_synonym
annotated target: 2-acetylamino-5-pentanediamic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-acetyl-L-glutamine
annotated property: has_exact_synonym
annotated target: 2-acetylazanyl-5-azanyl-5-oxopentanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-acetyl-L-glutamine
annotated property: has_exact_synonym
annotated target: AcGln
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: N-acetyl-L-glutamine
annotated property: has_exact_synonym
annotated target: N-acetyl-L-glutamine
has_synonym_type: Name from RESID

Axiom
annotated source: N-acetyl-L-glutamine
annotated property: has_exact_synonym
annotated target: N-acetylated L-glutamine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: N-acetyl-L-glutamine
annotated property: has_exact_synonym
annotated target: acetylglutamine
has_synonym_type: Alternate name from RESID

N-acetylglycine
type: Class
subclass of: MOD_00908
subclass of: MOD_01458
definition: A protein modification that effectively converts a glycine residue to N-acetylglycine.
diff avg: 42.04
diff formula: C 2 H 2 N 0 O 1
diff mono: 42.010567
formula: C 4 H 6 N 1 O 2
mass avg: 100.1
mass mono: 100.039856
origin: G
source: natural
term spec: N-term
database_cross_reference: uniprot.ptm:PTM-0203
has_exact_synonym: (acetylamino)acetic acid
has_exact_synonym: (acetylazanyl)ethanoic acid
has_exact_synonym: 2-(acetamido)ethanoic acid
has_exact_synonym: 2-(acetylamino)ethanoic acid
has_exact_synonym: AcGly
has_exact_synonym: MOD_RES N-acetylglycine
has_exact_synonym: N-acetylated glycine
has_exact_synonym: N-acetylglycine
has_exact_synonym: aceturic acid
has_obo_namespace: PSI-MOD
id: MOD:00055
in_subset: PSI-MOD-slim

Axiom
annotated source: N-acetylglycine
annotated property: definition
annotated target: A protein modification that effectively converts a glycine residue to N-acetylglycine.
database_cross_reference: PubMed:272676
database_cross_reference: PubMed:5545094
database_cross_reference: PubMed:6754709
database_cross_reference: RESID:AA0046

Axiom
annotated source: N-acetylglycine
annotated property: has_exact_synonym
annotated target: (acetylamino)acetic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-acetylglycine
annotated property: has_exact_synonym
annotated target: (acetylazanyl)ethanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-acetylglycine
annotated property: has_exact_synonym
annotated target: 2-(acetamido)ethanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N-acetylglycine
annotated property: has_exact_synonym
annotated target: 2-(acetylamino)ethanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-acetylglycine
annotated property: has_exact_synonym
annotated target: AcGly
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: N-acetylglycine
annotated property: has_exact_synonym
annotated target: MOD_RES N-acetylglycine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N-acetylglycine
annotated property: has_exact_synonym
annotated target: N-acetylated glycine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: N-acetylglycine
annotated property: has_exact_synonym
annotated target: N-acetylglycine
has_synonym_type: Name from RESID

Axiom
annotated source: N-acetylglycine
annotated property: has_exact_synonym
annotated target: aceturic acid
has_synonym_type: Alternate name from RESID

N-acetyl-L-isoleucine
type: Class
subclass of: MOD_00910
subclass of: MOD_01458
definition: A protein modification that effectively converts an L-isoleucine residue to N-acetyl-L-isoleucine.
diff avg: 42.04
diff formula: C 2 H 2 N 0 O 1
diff mono: 42.010567
formula: C 8 H 14 N 1 O 2
mass avg: 156.2
mass mono: 156.10245
origin: I
source: artifact
term spec: N-term
database_cross_reference: uniprot.ptm:PTM-0204
has_exact_synonym: (2S,3S)-2-acetamido-3-methylpentanoic acid
has_exact_synonym: 2-acetylamino-3-methylpentanoic acid
has_exact_synonym: 2-acetylazanyl-3-methylpentanoic acid
has_exact_synonym: AcIle
has_exact_synonym: N-acetyl-L-isoleucine
has_exact_synonym: N-acetylated L-isoleucine
has_exact_synonym: acetylisoleucine
has_obo_namespace: PSI-MOD
id: MOD:00056
comment: This is a deprecated entry in RESID. It probably does not occur naturally [JSG].

Axiom
annotated source: N-acetyl-L-isoleucine
annotated property: definition
annotated target: A protein modification that effectively converts an L-isoleucine residue to N-acetyl-L-isoleucine.
database_cross_reference: PubMed:8034631
database_cross_reference: RESID:AA0047

Axiom
annotated source: N-acetyl-L-isoleucine
annotated property: has_exact_synonym
annotated target: (2S,3S)-2-acetamido-3-methylpentanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N-acetyl-L-isoleucine
annotated property: has_exact_synonym
annotated target: 2-acetylamino-3-methylpentanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-acetyl-L-isoleucine
annotated property: has_exact_synonym
annotated target: 2-acetylazanyl-3-methylpentanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-acetyl-L-isoleucine
annotated property: has_exact_synonym
annotated target: AcIle
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: N-acetyl-L-isoleucine
annotated property: has_exact_synonym
annotated target: N-acetyl-L-isoleucine
has_synonym_type: Name from RESID

Axiom
annotated source: N-acetyl-L-isoleucine
annotated property: has_exact_synonym
annotated target: N-acetylated L-isoleucine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: N-acetyl-L-isoleucine
annotated property: has_exact_synonym
annotated target: acetylisoleucine
has_synonym_type: Alternate name from RESID

N2-acetyl-L-lysine
type: Class
subclass of: MOD_00723
subclass of: MOD_01458
definition: A protein modification that effectively converts an L-lysine residue to N2-acetyl-L-lysine.
diff avg: 42.04
diff formula: C 2 H 2 N 0 O 1
diff mono: 42.010567
formula: C 8 H 15 N 2 O 2
mass avg: 171.22
mass mono: 171.11336
origin: K
source: artifact
term spec: N-term
has_exact_synonym: (2S)-2-acetamido-6-aminohexanoic acid
has_exact_synonym: 2-acetylamino-6-aminohexanoic acid
has_exact_synonym: 2-acetylazanyl-6-azanylhexanoic acid
has_exact_synonym: N2-acetyl-L-lysine
has_exact_synonym: N2-acetylated L-lysine
has_exact_synonym: N2-acetyllysine
has_exact_synonym: N2AcLys
has_obo_namespace: PSI-MOD
has_related_synonym: Acetyl
id: MOD:00057
comment: This is a deprecated entry in RESID. It probably does not occur naturally [JSG].

Axiom
annotated source: N2-acetyl-L-lysine
annotated property: definition
annotated target: A protein modification that effectively converts an L-lysine residue to N2-acetyl-L-lysine.
database_cross_reference: PubMed:11857757
database_cross_reference: PubMed:11999733
database_cross_reference: PubMed:12175151
database_cross_reference: PubMed:14730666
database_cross_reference: PubMed:15350136
database_cross_reference: RESID:AA0048

Axiom
annotated source: N2-acetyl-L-lysine
annotated property: has_exact_synonym
annotated target: (2S)-2-acetamido-6-aminohexanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N2-acetyl-L-lysine
annotated property: has_exact_synonym
annotated target: 2-acetylamino-6-aminohexanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N2-acetyl-L-lysine
annotated property: has_exact_synonym
annotated target: 2-acetylazanyl-6-azanylhexanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N2-acetyl-L-lysine
annotated property: has_exact_synonym
annotated target: N2-acetyl-L-lysine
has_synonym_type: Name from RESID

Axiom
annotated source: N2-acetyl-L-lysine
annotated property: has_exact_synonym
annotated target: N2-acetylated L-lysine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: N2-acetyl-L-lysine
annotated property: has_exact_synonym
annotated target: N2-acetyllysine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N2-acetyl-L-lysine
annotated property: has_exact_synonym
annotated target: N2AcLys
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: N2-acetyl-L-lysine
annotated property: has_related_synonym
annotated target: Acetyl
has_synonym_type: Agreed label from MS community

N-acetyl-L-methionine
type: Class
subclass of: MOD_00913
subclass of: MOD_01458
definition: A protein modification that effectively converts an L-methionine to N-acetyl-L-methionine.
diff avg: 42.04
diff formula: C 2 H 2 N 0 O 1 S 0
diff mono: 42.010567
formula: C 7 H 12 N 1 O 2 S 1
mass avg: 174.24
mass mono: 174.05887
origin: M
source: natural
term spec: N-term
database_cross_reference: uniprot.ptm:PTM-0205
has_exact_synonym: (2S)-2-acetamido-4-(methylsulfanyl)butanoic acid
has_exact_synonym: 2-acetylamino-4-(methylsulfanyl)butanoic acid
has_exact_synonym: 2-acetylamino-4-(methylthio)butanoic acid
has_exact_synonym: 2-acetylazanyl-4-(methylsulfanyl)butanoic acid
has_exact_synonym: AcMet
has_exact_synonym: MOD_RES N-acetylmethionine
has_exact_synonym: N-acetyl-L-methionine
has_exact_synonym: N-acetylated L-methionine
has_exact_synonym: acetylmethionine
has_exact_synonym: methionamine
has_obo_namespace: PSI-MOD
id: MOD:00058
in_subset: PSI-MOD-slim

Axiom
annotated source: N-acetyl-L-methionine
annotated property: definition
annotated target: A protein modification that effectively converts an L-methionine to N-acetyl-L-methionine.
database_cross_reference: PubMed:7944406
database_cross_reference: RESID:AA0049

Axiom
annotated source: N-acetyl-L-methionine
annotated property: has_exact_synonym
annotated target: (2S)-2-acetamido-4-(methylsulfanyl)butanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N-acetyl-L-methionine
annotated property: has_exact_synonym
annotated target: 2-acetylamino-4-(methylsulfanyl)butanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-acetyl-L-methionine
annotated property: has_exact_synonym
annotated target: 2-acetylamino-4-(methylthio)butanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-acetyl-L-methionine
annotated property: has_exact_synonym
annotated target: 2-acetylazanyl-4-(methylsulfanyl)butanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-acetyl-L-methionine
annotated property: has_exact_synonym
annotated target: AcMet
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: N-acetyl-L-methionine
annotated property: has_exact_synonym
annotated target: MOD_RES N-acetylmethionine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N-acetyl-L-methionine
annotated property: has_exact_synonym
annotated target: N-acetyl-L-methionine
has_synonym_type: Name from RESID

Axiom
annotated source: N-acetyl-L-methionine
annotated property: has_exact_synonym
annotated target: N-acetylated L-methionine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: N-acetyl-L-methionine
annotated property: has_exact_synonym
annotated target: acetylmethionine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-acetyl-L-methionine
annotated property: has_exact_synonym
annotated target: methionamine
has_synonym_type: Alternate name from RESID

N-acetyl-L-proline
type: Class
subclass of: MOD_00915
subclass of: MOD_01458
definition: A protein modification that effectively converts an L-proline residue to N-acetyl-L-proline.
diff avg: 42.04
diff formula: C 2 H 2 N 0 O 1
diff mono: 42.010567
formula: C 7 H 10 N 1 O 2
mass avg: 140.16
mass mono: 140.07115
origin: P
source: natural
term spec: N-term
database_cross_reference: uniprot.ptm:PTM-0206
has_exact_synonym: (2S)-1-acetyl-2-pyrrolidinecarboxylic acid
has_exact_synonym: 1-acetylproline
has_exact_synonym: MOD_RES N-acetylproline
has_exact_synonym: N-acetyl-L-proline
has_exact_synonym: N-acetylated L-proline
has_exact_synonym: N-acetylproline
has_exact_synonym: NAcPro
has_exact_synonym: acetylproline
has_obo_namespace: PSI-MOD
id: MOD:00059
in_subset: PSI-MOD-slim

Axiom
annotated source: N-acetyl-L-proline
annotated property: definition
annotated target: A protein modification that effectively converts an L-proline residue to N-acetyl-L-proline.
database_cross_reference: PubMed:2928307
database_cross_reference: RESID:AA0050

Axiom
annotated source: N-acetyl-L-proline
annotated property: has_exact_synonym
annotated target: (2S)-1-acetyl-2-pyrrolidinecarboxylic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N-acetyl-L-proline
annotated property: has_exact_synonym
annotated target: 1-acetylproline
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-acetyl-L-proline
annotated property: has_exact_synonym
annotated target: MOD_RES N-acetylproline
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N-acetyl-L-proline
annotated property: has_exact_synonym
annotated target: N-acetyl-L-proline
has_synonym_type: Name from RESID

Axiom
annotated source: N-acetyl-L-proline
annotated property: has_exact_synonym
annotated target: N-acetylated L-proline
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: N-acetyl-L-proline
annotated property: has_exact_synonym
annotated target: N-acetylproline
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-acetyl-L-proline
annotated property: has_exact_synonym
annotated target: NAcPro
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: N-acetyl-L-proline
annotated property: has_exact_synonym
annotated target: acetylproline
has_synonym_type: Alternate name from RESID

N-acetyl-L-serine
type: Class
subclass of: monoacetylated L-serine
subclass of: MOD_01458
definition: A protein modification that effectively converts an L-serine residue to N-acetyl-L-serine.
diff avg: 42.04
diff formula: C 2 H 2 N 0 O 1
diff mono: 42.010567
formula: C 5 H 8 N 1 O 3
mass avg: 130.12
mass mono: 130.05042
origin: S
source: natural
term spec: N-term
database_cross_reference: uniprot.ptm:PTM-0207
has_exact_synonym: (2S)-2-acetamido-3-hydroxypropanoic acid
has_exact_synonym: 2-acetylamino-3-hydroxypropanoic acid
has_exact_synonym: 2-acetylazanyl-3-hydroxypropanoic acid
has_exact_synonym: MOD_RES N-acetylserine
has_exact_synonym: N-acetyl-L-serine
has_exact_synonym: N-acetylated L-serine
has_exact_synonym: N-acetylserine
has_exact_synonym: NAcSer
has_obo_namespace: PSI-MOD
has_related_synonym: Acetyl
id: MOD:00060
in_subset: PSI-MOD-slim

Axiom
annotated source: N-acetyl-L-serine
annotated property: definition
annotated target: A protein modification that effectively converts an L-serine residue to N-acetyl-L-serine.
database_cross_reference: PubMed:11857757
database_cross_reference: PubMed:11999733
database_cross_reference: PubMed:12175151
database_cross_reference: PubMed:14730666
database_cross_reference: PubMed:15350136
database_cross_reference: PubMed:1880797
database_cross_reference: PubMed:2106685
database_cross_reference: PubMed:6997045
database_cross_reference: RESID:AA0051

Axiom
annotated source: N-acetyl-L-serine
annotated property: has_exact_synonym
annotated target: (2S)-2-acetamido-3-hydroxypropanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N-acetyl-L-serine
annotated property: has_exact_synonym
annotated target: 2-acetylamino-3-hydroxypropanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-acetyl-L-serine
annotated property: has_exact_synonym
annotated target: 2-acetylazanyl-3-hydroxypropanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-acetyl-L-serine
annotated property: has_exact_synonym
annotated target: MOD_RES N-acetylserine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N-acetyl-L-serine
annotated property: has_exact_synonym
annotated target: N-acetyl-L-serine
has_synonym_type: Name from RESID

Axiom
annotated source: N-acetyl-L-serine
annotated property: has_exact_synonym
annotated target: N-acetylated L-serine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: N-acetyl-L-serine
annotated property: has_exact_synonym
annotated target: N-acetylserine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-acetyl-L-serine
annotated property: has_exact_synonym
annotated target: NAcSer
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: N-acetyl-L-serine
annotated property: has_related_synonym
annotated target: Acetyl
has_synonym_type: Agreed label from MS community

N-acetyl-L-threonine
type: Class
subclass of: MOD_01186
subclass of: MOD_01458
definition: A protein modification that effectively converts an L-threonine residue to N-acetyl-L-threonine.
diff avg: 42.04
diff formula: C 2 H 2 N 0 O 1
diff mono: 42.010567
formula: C 6 H 10 N 1 O 3
mass avg: 144.15
mass mono: 144.06607
origin: T
source: natural
term spec: N-term
database_cross_reference: uniprot.ptm:PTM-0208
has_exact_synonym: (2S,3R)-2-acetamido-3-hydroxybutanoic acid
has_exact_synonym: 2-acetylamino-3-hydroxybutanoic acid
has_exact_synonym: 2-acetylazanyl-3-hydroxybutanoic acid
has_exact_synonym: MOD_RES N-acetylthreonine
has_exact_synonym: N-acetyl-L-threonine
has_exact_synonym: N-acetylated L-threonine
has_exact_synonym: N-acetylthreonine
has_exact_synonym: N-methylcarbonylthreonine
has_exact_synonym: NAcThr
has_obo_namespace: PSI-MOD
has_related_synonym: Acetyl
has_related_synonym: Acetylation
id: MOD:00061
in_subset: PSI-MOD-slim

Axiom
annotated source: N-acetyl-L-threonine
annotated property: definition
annotated target: A protein modification that effectively converts an L-threonine residue to N-acetyl-L-threonine.
database_cross_reference: PubMed:11857757
database_cross_reference: PubMed:11999733
database_cross_reference: PubMed:12175151
database_cross_reference: PubMed:14730666
database_cross_reference: PubMed:15350136
database_cross_reference: PubMed:2106685
database_cross_reference: PubMed:6997045
database_cross_reference: RESID:AA0052

Axiom
annotated source: N-acetyl-L-threonine
annotated property: has_exact_synonym
annotated target: (2S,3R)-2-acetamido-3-hydroxybutanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N-acetyl-L-threonine
annotated property: has_exact_synonym
annotated target: 2-acetylamino-3-hydroxybutanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-acetyl-L-threonine
annotated property: has_exact_synonym
annotated target: 2-acetylazanyl-3-hydroxybutanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-acetyl-L-threonine
annotated property: has_exact_synonym
annotated target: MOD_RES N-acetylthreonine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N-acetyl-L-threonine
annotated property: has_exact_synonym
annotated target: N-acetyl-L-threonine
has_synonym_type: Name from RESID

Axiom
annotated source: N-acetyl-L-threonine
annotated property: has_exact_synonym
annotated target: N-acetylated L-threonine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: N-acetyl-L-threonine
annotated property: has_exact_synonym
annotated target: N-acetylthreonine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-acetyl-L-threonine
annotated property: has_exact_synonym
annotated target: N-methylcarbonylthreonine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-acetyl-L-threonine
annotated property: has_exact_synonym
annotated target: NAcThr
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: N-acetyl-L-threonine
annotated property: has_related_synonym
annotated target: Acetyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: N-acetyl-L-threonine
annotated property: has_related_synonym
annotated target: Acetylation
has_synonym_type: Description (full_name) from Unimod

N-acetyl-L-tyrosine
type: Class
subclass of: MOD_00919
subclass of: MOD_01458
definition: A protein modification that effectively converts an L-tyrosine residue to N-acetyl-L-tyrosine.
diff avg: 42.04
diff formula: C 2 H 2 N 0 O 1
diff mono: 42.010567
formula: C 11 H 12 N 1 O 3
mass avg: 206.22
mass mono: 206.08171
origin: Y
source: natural
term spec: N-term
database_cross_reference: uniprot.ptm:PTM-0209
has_exact_synonym: (2S)-2-acetamido-3-(4-hydoxyphenyl)propanoic acid
has_exact_synonym: 2-acetylamino-3-(4-hydoxyphenyl)propanoic acid
has_exact_synonym: 2-acetylazanyl-3-(4-hydoxyphenyl)propanoic acid
has_exact_synonym: AcTyr
has_exact_synonym: MOD_RES N-acetyltyrosine
has_exact_synonym: N-acetyl-L-tyrosine
has_exact_synonym: N-acetylated L-tyrosine
has_exact_synonym: N-acetyltyrosine
has_obo_namespace: PSI-MOD
has_related_synonym: Acetyl
id: MOD:00062

Axiom
annotated source: N-acetyl-L-tyrosine
annotated property: definition
annotated target: A protein modification that effectively converts an L-tyrosine residue to N-acetyl-L-tyrosine.
database_cross_reference: PubMed:11857757
database_cross_reference: PubMed:11999733
database_cross_reference: PubMed:12175151
database_cross_reference: PubMed:14730666
database_cross_reference: PubMed:15350136
database_cross_reference: PubMed:2506074
database_cross_reference: PubMed:475783
database_cross_reference: RESID:AA0053

Axiom
annotated source: N-acetyl-L-tyrosine
annotated property: has_exact_synonym
annotated target: (2S)-2-acetamido-3-(4-hydoxyphenyl)propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N-acetyl-L-tyrosine
annotated property: has_exact_synonym
annotated target: 2-acetylamino-3-(4-hydoxyphenyl)propanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-acetyl-L-tyrosine
annotated property: has_exact_synonym
annotated target: 2-acetylazanyl-3-(4-hydoxyphenyl)propanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-acetyl-L-tyrosine
annotated property: has_exact_synonym
annotated target: AcTyr
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: N-acetyl-L-tyrosine
annotated property: has_exact_synonym
annotated target: MOD_RES N-acetyltyrosine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N-acetyl-L-tyrosine
annotated property: has_exact_synonym
annotated target: N-acetyl-L-tyrosine
has_synonym_type: Name from RESID

Axiom
annotated source: N-acetyl-L-tyrosine
annotated property: has_exact_synonym
annotated target: N-acetylated L-tyrosine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: N-acetyl-L-tyrosine
annotated property: has_exact_synonym
annotated target: N-acetyltyrosine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-acetyl-L-tyrosine
annotated property: has_related_synonym
annotated target: Acetyl
has_synonym_type: Agreed label from MS community

N-acetyl-L-valine
type: Class
subclass of: MOD_00920
subclass of: MOD_01458
definition: A protein modification that effectively converts an L-valine residue to N-acetyl-L-valine.
diff avg: 42.04
diff formula: C 2 H 2 N 0 O 1
diff mono: 42.010567
formula: C 7 H 12 N 1 O 2
mass avg: 142.18
mass mono: 142.0868
origin: V
source: natural
term spec: N-term
database_cross_reference: uniprot.ptm:PTM-0210
has_exact_synonym: (2S)-2-acetamido-3-methylbutanoic acid
has_exact_synonym: 2-acetylamino-3-methylbutanoic acid
has_exact_synonym: 2-acetylazanyl-3-methylbutanoic acid
has_exact_synonym: AcVal
has_exact_synonym: MOD_RES N-acetylvaline
has_exact_synonym: N-acetyl-L-valine
has_exact_synonym: N-acetylated L-valine
has_exact_synonym: N-acetylvaline
has_obo_namespace: PSI-MOD
id: MOD:00063
in_subset: PSI-MOD-slim

Axiom
annotated source: N-acetyl-L-valine
annotated property: definition
annotated target: A protein modification that effectively converts an L-valine residue to N-acetyl-L-valine.
database_cross_reference: PubMed:1735421
database_cross_reference: RESID:AA0054

Axiom
annotated source: N-acetyl-L-valine
annotated property: has_exact_synonym
annotated target: (2S)-2-acetamido-3-methylbutanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N-acetyl-L-valine
annotated property: has_exact_synonym
annotated target: 2-acetylamino-3-methylbutanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-acetyl-L-valine
annotated property: has_exact_synonym
annotated target: 2-acetylazanyl-3-methylbutanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-acetyl-L-valine
annotated property: has_exact_synonym
annotated target: AcVal
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: N-acetyl-L-valine
annotated property: has_exact_synonym
annotated target: MOD_RES N-acetylvaline
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N-acetyl-L-valine
annotated property: has_exact_synonym
annotated target: N-acetyl-L-valine
has_synonym_type: Name from RESID

Axiom
annotated source: N-acetyl-L-valine
annotated property: has_exact_synonym
annotated target: N-acetylated L-valine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: N-acetyl-L-valine
annotated property: has_exact_synonym
annotated target: N-acetylvaline
has_synonym_type: Alternate name from RESID

N6-acetyl-L-lysine
type: Class
subclass of: MOD_00723
subclass of: MOD_01875
definition: A protein modification that effectively converts an L-lysine residue to N6-acetyl-L-lysine.
diff avg: 42.04
diff formula: C 2 H 2 N 0 O 1
diff mono: 42.010567
formula: C 8 H 14 N 2 O 2
mass avg: 170.21
mass mono: 170.10553
origin: K
source: natural
database_cross_reference: Unimod:1
database_cross_reference: uniprot.ptm:PTM-0190
has_exact_synonym: (2S)-6-acetamido-2-aminohexanoic acid
has_exact_synonym: 6-acetylamino-2-aminohexanoic acid
has_exact_synonym: 6-acetylazanyl-2-aminohexanoic acid
has_exact_synonym: MOD_RES N6-acetyllysine
has_exact_synonym: N(zeta)-acetyllysine
has_exact_synonym: N6-acetyl-L-lysine
has_exact_synonym: N6-acetylated L-lysine
has_exact_synonym: N6AcLys
has_exact_synonym: acetylk
has_exact_synonym: epsilon-acetyllysine
has_obo_namespace: PSI-MOD
has_related_synonym: Acetyl
has_related_synonym: Acetylation
id: MOD:00064
in_subset: PSI-MOD-slim

Axiom
annotated source: N6-acetyl-L-lysine
annotated property: definition
annotated target: A protein modification that effectively converts an L-lysine residue to N6-acetyl-L-lysine.
database_cross_reference: ChEBI:17752
database_cross_reference: DeltaMass:214
database_cross_reference: OMSSA:24
database_cross_reference: PubMed:11369851
database_cross_reference: PubMed:11857757
database_cross_reference: PubMed:11999733
database_cross_reference: PubMed:12175151
database_cross_reference: PubMed:14730666
database_cross_reference: PubMed:15350136
database_cross_reference: PubMed:1680872
database_cross_reference: PubMed:670159
database_cross_reference: RESID:AA0055
database_cross_reference: Unimod:1#K

Axiom
annotated source: N6-acetyl-L-lysine
annotated property: has_exact_synonym
annotated target: (2S)-6-acetamido-2-aminohexanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N6-acetyl-L-lysine
annotated property: has_exact_synonym
annotated target: 6-acetylamino-2-aminohexanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N6-acetyl-L-lysine
annotated property: has_exact_synonym
annotated target: 6-acetylazanyl-2-aminohexanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N6-acetyl-L-lysine
annotated property: has_exact_synonym
annotated target: MOD_RES N6-acetyllysine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N6-acetyl-L-lysine
annotated property: has_exact_synonym
annotated target: N(zeta)-acetyllysine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N6-acetyl-L-lysine
annotated property: has_exact_synonym
annotated target: N6-acetyl-L-lysine
has_synonym_type: Name from RESID

Axiom
annotated source: N6-acetyl-L-lysine
annotated property: has_exact_synonym
annotated target: N6-acetylated L-lysine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: N6-acetyl-L-lysine
annotated property: has_exact_synonym
annotated target: N6AcLys
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: N6-acetyl-L-lysine
annotated property: has_exact_synonym
annotated target: acetylk
has_synonym_type: Short label from OMSSA

Axiom
annotated source: N6-acetyl-L-lysine
annotated property: has_exact_synonym
annotated target: epsilon-acetyllysine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N6-acetyl-L-lysine
annotated property: has_related_synonym
annotated target: Acetyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: N6-acetyl-L-lysine
annotated property: has_related_synonym
annotated target: Acetylation
has_synonym_type: Description (full_name) from Unimod

S-acetyl-L-cysteine
type: Class
subclass of: mono S-acetylated residue
subclass of: monoacetylated L-cysteine
definition: A protein modification that effectively converts an L-cysteine residue to S-acetyl-L-cysteine.
diff avg: 42.04
diff formula: C 2 H 2 N 0 O 1 S 0
diff mono: 42.010567
formula: C 5 H 7 N 1 O 2 S 1
mass avg: 145.18
mass mono: 145.01974
origin: C
source: natural
database_cross_reference: Unimod:1
has_exact_synonym: (2R)-3-acetylsulfanyl-2-aminopropanoic acid
has_exact_synonym: 2-amino-3-(acetylthio)propanoic acid
has_exact_synonym: 2-azanyl-3-(acetylsulfanyl)propanoic acid
has_exact_synonym: ACT_SITE S-acetylcysteine intermediate
has_exact_synonym: S-acetyl-L-cysteine
has_exact_synonym: S-acetylcysteine
has_exact_synonym: SAcCys
has_exact_synonym: cysteine acetate thioester
has_obo_namespace: PSI-MOD
has_related_synonym: Acetyl
has_related_synonym: Acetylation
id: MOD:00065
in_subset: PSI-MOD-slim

Axiom
annotated source: S-acetyl-L-cysteine
annotated property: definition
annotated target: A protein modification that effectively converts an L-cysteine residue to S-acetyl-L-cysteine.
database_cross_reference: PubMed:11857757
database_cross_reference: PubMed:11999733
database_cross_reference: PubMed:12175151
database_cross_reference: PubMed:1310545
database_cross_reference: PubMed:14730666
database_cross_reference: PubMed:15350136
database_cross_reference: RESID:AA0056
database_cross_reference: Unimod:1#C

Axiom
annotated source: S-acetyl-L-cysteine
annotated property: has_exact_synonym
annotated target: (2R)-3-acetylsulfanyl-2-aminopropanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: S-acetyl-L-cysteine
annotated property: has_exact_synonym
annotated target: 2-amino-3-(acetylthio)propanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-acetyl-L-cysteine
annotated property: has_exact_synonym
annotated target: 2-azanyl-3-(acetylsulfanyl)propanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-acetyl-L-cysteine
annotated property: has_exact_synonym
annotated target: ACT_SITE S-acetylcysteine intermediate
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: S-acetyl-L-cysteine
annotated property: has_exact_synonym
annotated target: S-acetyl-L-cysteine
has_synonym_type: Name from RESID

Axiom
annotated source: S-acetyl-L-cysteine
annotated property: has_exact_synonym
annotated target: S-acetylcysteine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-acetyl-L-cysteine
annotated property: has_exact_synonym
annotated target: SAcCys
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: S-acetyl-L-cysteine
annotated property: has_exact_synonym
annotated target: cysteine acetate thioester
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-acetyl-L-cysteine
annotated property: has_related_synonym
annotated target: Acetyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: S-acetyl-L-cysteine
annotated property: has_related_synonym
annotated target: Acetylation
has_synonym_type: Description (full_name) from Unimod

N-formylglycine
type: Class
subclass of: N-formylated residue
subclass of: MOD_00908
subclass of: MOD_01696
definition: A protein modification that effectively converts a glycine residue to N-formylglycine.
diff avg: 28.01
diff formula: C 1 H 0 N 0 O 1
diff mono: 27.994915
formula: C 3 H 4 N 1 O 2
mass avg: 86.07
mass mono: 86.0242
origin: G
source: natural
term spec: N-term
database_cross_reference: uniprot.ptm:PTM-0211
has_exact_synonym: (formylamino)acetic acid
has_exact_synonym: (formylamino)ethanoic acid
has_exact_synonym: (formylazanyl)ethanoic acid
has_exact_synonym: 2-formamidoacetic acid
has_exact_synonym: 2-formamidoethanoic acid
has_exact_synonym: MOD_RES N-formylglycine
has_exact_synonym: N(alpha)-formylglycine
has_exact_synonym: N-formylated glycine
has_exact_synonym: N-formylglycine
has_exact_synonym: NFoGly
has_obo_namespace: PSI-MOD
id: MOD:00066

Axiom
annotated source: N-formylglycine
annotated property: definition
annotated target: A protein modification that effectively converts a glycine residue to N-formylglycine.
database_cross_reference: PubMed:5139483
database_cross_reference: RESID:AA0057

Axiom
annotated source: N-formylglycine
annotated property: has_exact_synonym
annotated target: (formylamino)acetic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-formylglycine
annotated property: has_exact_synonym
annotated target: (formylamino)ethanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N-formylglycine
annotated property: has_exact_synonym
annotated target: (formylazanyl)ethanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-formylglycine
annotated property: has_exact_synonym
annotated target: 2-formamidoacetic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-formylglycine
annotated property: has_exact_synonym
annotated target: 2-formamidoethanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-formylglycine
annotated property: has_exact_synonym
annotated target: MOD_RES N-formylglycine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N-formylglycine
annotated property: has_exact_synonym
annotated target: N(alpha)-formylglycine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-formylglycine
annotated property: has_exact_synonym
annotated target: N-formylated glycine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: N-formylglycine
annotated property: has_exact_synonym
annotated target: N-formylglycine
has_synonym_type: Name from RESID

Axiom
annotated source: N-formylglycine
annotated property: has_exact_synonym
annotated target: NFoGly
has_synonym_type: Short label curated by PSI-MOD

N-D-glucuronoylglycine
type: Class
subclass of: N-glucuronylated residue
subclass of: MOD_00908
definition: A protein modification that effectively converts a glycine residue to N-D-glucuronoylglycine.
diff avg: 176.12
diff formula: C 6 H 8 N 0 O 6
diff mono: 176.03209
formula: C 8 H 12 N 1 O 7
mass avg: 234.18
mass mono: 234.06137
origin: G
source: natural
term spec: N-term
database_cross_reference: uniprot.ptm:PTM-0331
has_exact_synonym: 2-(glucuronoylamino)ethanoic acid
has_exact_synonym: MOD_RES N-D-glucuronoyl glycine
has_exact_synonym: N-D-glucuronoyl-glycine
has_exact_synonym: N-D-glucuronyl-glycine
has_exact_synonym: NGlcAGly
has_exact_synonym: ntermpepglucuronylg
has_obo_namespace: PSI-MOD
has_related_synonym: Glucuronyl
id: MOD:00067

Axiom
annotated source: N-D-glucuronoylglycine
annotated property: definition
annotated target: A protein modification that effectively converts a glycine residue to N-D-glucuronoylglycine.
database_cross_reference: OMSSA:50
database_cross_reference: PubMed:10858503
database_cross_reference: PubMed:12716131
database_cross_reference: PubMed:6493057
database_cross_reference: PubMed:7398618
database_cross_reference: RESID:AA0058

Axiom
annotated source: N-D-glucuronoylglycine
annotated property: has_exact_synonym
annotated target: 2-(glucuronoylamino)ethanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N-D-glucuronoylglycine
annotated property: has_exact_synonym
annotated target: MOD_RES N-D-glucuronoyl glycine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N-D-glucuronoylglycine
annotated property: has_exact_synonym
annotated target: N-D-glucuronoyl-glycine
has_synonym_type: Name from RESID

Axiom
annotated source: N-D-glucuronoylglycine
annotated property: has_exact_synonym
annotated target: N-D-glucuronyl-glycine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-D-glucuronoylglycine
annotated property: has_exact_synonym
annotated target: NGlcAGly
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: N-D-glucuronoylglycine
annotated property: has_exact_synonym
annotated target: ntermpepglucuronylg
has_synonym_type: Short label from OMSSA

Axiom
annotated source: N-D-glucuronoylglycine
annotated property: has_related_synonym
annotated target: Glucuronyl
has_synonym_type: Agreed label from MS community

N-myristoylglycine
type: Class
subclass of: N-myristoylated residue
subclass of: MOD_00908
subclass of: MOD_01696
definition: A protein modification that effectively converts a glycine residue to N-myristoylglycine.
diff avg: 210.36
diff formula: C 14 H 26 N 0 O 1
diff mono: 210.19836
formula: C 16 H 30 N 1 O 2
mass avg: 268.42
mass mono: 268.22766
origin: G
source: natural
term spec: N-term
database_cross_reference: Unimod:45
database_cross_reference: uniprot.ptm:PTM-0221
has_exact_synonym: (tetradecanoylamino)ethanoic acid
has_exact_synonym: LIPID N-myristoyl glycine
has_exact_synonym: N-(1-oxotetradecyl)glycine
has_exact_synonym: N-(C14:0 aliphatic acyl)glycine
has_exact_synonym: N-myristoyl-glycine
has_exact_synonym: N-myristoylated glycine
has_exact_synonym: N-myristylglycine
has_exact_synonym: N-tetradecanoylglycine
has_exact_synonym: NMyrGly
has_exact_synonym: ntermpepmyristoylationg
has_obo_namespace: PSI-MOD
has_related_synonym: Myristoyl
has_related_synonym: Myristoylation
id: MOD:00068
in_subset: PSI-MOD-slim

Axiom
annotated source: N-myristoylglycine
annotated property: definition
annotated target: A protein modification that effectively converts a glycine residue to N-myristoylglycine.
database_cross_reference: OMSSA:80
database_cross_reference: PubMed:11955007
database_cross_reference: PubMed:11955008
database_cross_reference: PubMed:1326520
database_cross_reference: PubMed:1386601
database_cross_reference: PubMed:6436247
database_cross_reference: PubMed:7543369
database_cross_reference: RESID:AA0059
database_cross_reference: Unimod:45#G

Axiom
annotated source: N-myristoylglycine
annotated property: has_exact_synonym
annotated target: (tetradecanoylamino)ethanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N-myristoylglycine
annotated property: has_exact_synonym
annotated target: LIPID N-myristoyl glycine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N-myristoylglycine
annotated property: has_exact_synonym
annotated target: N-(1-oxotetradecyl)glycine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-myristoylglycine
annotated property: has_exact_synonym
annotated target: N-(C14:0 aliphatic acyl)glycine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: N-myristoylglycine
annotated property: has_exact_synonym
annotated target: N-myristoyl-glycine
has_synonym_type: Name from RESID

Axiom
annotated source: N-myristoylglycine
annotated property: has_exact_synonym
annotated target: N-myristoylated glycine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: N-myristoylglycine
annotated property: has_exact_synonym
annotated target: N-myristylglycine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-myristoylglycine
annotated property: has_exact_synonym
annotated target: N-tetradecanoylglycine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-myristoylglycine
annotated property: has_exact_synonym
annotated target: NMyrGly
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: N-myristoylglycine
annotated property: has_exact_synonym
annotated target: ntermpepmyristoylationg
has_synonym_type: Short label from OMSSA

Axiom
annotated source: N-myristoylglycine
annotated property: has_related_synonym
annotated target: Myristoyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: N-myristoylglycine
annotated property: has_related_synonym
annotated target: Myristoylation
has_synonym_type: Description (full_name) from Unimod

N-palmitoyl-L-cysteine
type: Class
subclass of: MOD_01684
subclass of: MOD_01685
definition: A protein modification that effectively converts an L-cysteine residue to N-palmitoyl-L-cysteine.
diff avg: 238.41
diff formula: C 16 H 30 N 0 O 1 S 0
diff mono: 238.22966
formula: C 19 H 36 N 1 O 2 S 1
mass avg: 342.56
mass mono: 342.24667
origin: C
source: natural
term spec: N-term
database_cross_reference: uniprot.ptm:PTM-0222
has_exact_synonym: (2R)-2-hexadecanoylamino-3-sulfanylpropanoic acid
has_exact_synonym: 2-hexadecanamido-3-sulfanylpropanoic acid
has_exact_synonym: 2-hexadecanoylamino-3-mercaptopropanoic acid
has_exact_synonym: LIPID N-palmitoyl cysteine
has_exact_synonym: N-(1-oxahexadecyl)-L-cysteine
has_exact_synonym: N-hexadecanoylated L-cysteine
has_exact_synonym: N-palmitoyl-L-cysteine
has_exact_synonym: N-palmitoylated L-cysteine
has_exact_synonym: NPamCys
has_obo_namespace: PSI-MOD
has_related_synonym: Palmitoyl
has_related_synonym: Palmitoylation
id: MOD:00069
in_subset: PSI-MOD-slim
comment: incidental to RESID:AA0107 incidental to RESID:AA0309

Axiom
annotated source: N-palmitoyl-L-cysteine
annotated property: definition
annotated target: A protein modification that effectively converts an L-cysteine residue to N-palmitoyl-L-cysteine.
database_cross_reference: PubMed:10896212
database_cross_reference: PubMed:4575979
database_cross_reference: PubMed:9056182
database_cross_reference: PubMed:9593755
database_cross_reference: RESID:AA0060

Axiom
annotated source: N-palmitoyl-L-cysteine
annotated property: has_exact_synonym
annotated target: (2R)-2-hexadecanoylamino-3-sulfanylpropanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N-palmitoyl-L-cysteine
annotated property: has_exact_synonym
annotated target: 2-hexadecanamido-3-sulfanylpropanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-palmitoyl-L-cysteine
annotated property: has_exact_synonym
annotated target: 2-hexadecanoylamino-3-mercaptopropanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-palmitoyl-L-cysteine
annotated property: has_exact_synonym
annotated target: LIPID N-palmitoyl cysteine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N-palmitoyl-L-cysteine
annotated property: has_exact_synonym
annotated target: N-(1-oxahexadecyl)-L-cysteine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-palmitoyl-L-cysteine
annotated property: has_exact_synonym
annotated target: N-hexadecanoylated L-cysteine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: N-palmitoyl-L-cysteine
annotated property: has_exact_synonym
annotated target: N-palmitoyl-L-cysteine
has_synonym_type: Name from RESID

Axiom
annotated source: N-palmitoyl-L-cysteine
annotated property: has_exact_synonym
annotated target: N-palmitoylated L-cysteine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: N-palmitoyl-L-cysteine
annotated property: has_exact_synonym
annotated target: NPamCys
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: N-palmitoyl-L-cysteine
annotated property: has_related_synonym
annotated target: Palmitoyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: N-palmitoyl-L-cysteine
annotated property: has_related_synonym
annotated target: Palmitoylation
has_synonym_type: Description (full_name) from Unimod

N-methyl-L-alanine
type: Class
subclass of: MOD_01461
subclass of: MOD_01680
definition: A protein modification that effectively converts an L-alanine residue to N-methyl-L-alanine.
diff avg: 14.03
diff formula: C 1 H 2 N 0 O 0
diff mono: 14.01565
formula: C 4 H 7 N 1 O 1
mass avg: 85.11
mass mono: 85.052765
origin: A
source: natural
term spec: N-term
database_cross_reference: uniprot.ptm:PTM-0214
has_exact_synonym: (2S)-2-methylaminopropanoic acid
has_exact_synonym: 2-methylazanylpropanoic acid
has_exact_synonym: MOD_RES N-methylalanine
has_exact_synonym: N-methyl-L-alanine
has_exact_synonym: N-methylalanine
has_exact_synonym: N-methylated L-alanine
has_exact_synonym: NMe1Ala
has_obo_namespace: PSI-MOD
has_related_synonym: Methyl
has_related_synonym: Methylation
id: MOD:00070
in_subset: PSI-MOD-slim
comment: Polypeptides with monomethylated amino terminals can undergo premature cleavage during the coupling step of an Edman degradation. This can result in "preview" with both a residue and the following residue being seen from the first step on through a sequence [JSG].

Axiom
annotated source: N-methyl-L-alanine
annotated property: definition
annotated target: A protein modification that effectively converts an L-alanine residue to N-methyl-L-alanine.
database_cross_reference: ChEBI:17519
database_cross_reference: PubMed:323502
database_cross_reference: PubMed:337304
database_cross_reference: PubMed:7007074
database_cross_reference: RESID:AA0061

Axiom
annotated source: N-methyl-L-alanine
annotated property: has_exact_synonym
annotated target: (2S)-2-methylaminopropanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N-methyl-L-alanine
annotated property: has_exact_synonym
annotated target: 2-methylazanylpropanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-methyl-L-alanine
annotated property: has_exact_synonym
annotated target: MOD_RES N-methylalanine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N-methyl-L-alanine
annotated property: has_exact_synonym
annotated target: N-methyl-L-alanine
has_synonym_type: Name from RESID

Axiom
annotated source: N-methyl-L-alanine
annotated property: has_exact_synonym
annotated target: N-methylalanine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-methyl-L-alanine
annotated property: has_exact_synonym
annotated target: N-methylated L-alanine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: N-methyl-L-alanine
annotated property: has_exact_synonym
annotated target: NMe1Ala
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: N-methyl-L-alanine
annotated property: has_related_synonym
annotated target: Methyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: N-methyl-L-alanine
annotated property: has_related_synonym
annotated target: Methylation
has_synonym_type: Description (full_name) from Unimod

N,N,N-trimethyl-L-alanine
type: Class
subclass of: MOD_01461
subclass of: MOD_01698
definition: A protein modification that effectively converts an L-alanine residue to N,N,N-trimethyl-L-alanine.
diff avg: 43.09
diff formula: C 3 H 7 N 0 O 0
diff mono: 43.054226
formal charge: 1+
formula: C 6 H 13 N 1 O 1
mass avg: 115.18
mass mono: 115.09917
origin: A
source: natural
term spec: N-term
database_cross_reference: uniprot.ptm:PTM-0177
has_exact_synonym: (1S)-1-carboxy-N,N,N-trimethylethanaminium
has_exact_synonym: (1S)-1-carboxy-N,N,N-trimethylethanazanium
has_exact_synonym: (2S)-2-(trimethylammonio)propanoic acid
has_exact_synonym: MOD_RES N,N,N-trimethylalanine
has_exact_synonym: N,N,N-trimethyl-L-alanine
has_exact_synonym: N,N,N-trimethylalanine cation
has_exact_synonym: N,N,N-trimethylalaninium
has_exact_synonym: N,N,N-trimethylated L-alanine
has_exact_synonym: N2Me3+Ala
has_exact_synonym: NMe3Ala
has_obo_namespace: PSI-MOD
has_related_synonym: Trimethyl
has_related_synonym: tri-Methylation
id: MOD:00071
in_subset: PSI-MOD-slim

Axiom
annotated source: N,N,N-trimethyl-L-alanine
annotated property: definition
annotated target: A protein modification that effectively converts an L-alanine residue to N,N,N-trimethyl-L-alanine.
database_cross_reference: PubMed:12590383
database_cross_reference: PubMed:332162
database_cross_reference: PubMed:3979397
database_cross_reference: PubMed:6778808
database_cross_reference: PubMed:7715456
database_cross_reference: RESID:AA0062

Axiom
annotated source: N,N,N-trimethyl-L-alanine
annotated property: has_exact_synonym
annotated target: (1S)-1-carboxy-N,N,N-trimethylethanaminium
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N,N,N-trimethyl-L-alanine
annotated property: has_exact_synonym
annotated target: (1S)-1-carboxy-N,N,N-trimethylethanazanium
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N,N,N-trimethyl-L-alanine
annotated property: has_exact_synonym
annotated target: (2S)-2-(trimethylammonio)propanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N,N,N-trimethyl-L-alanine
annotated property: has_exact_synonym
annotated target: MOD_RES N,N,N-trimethylalanine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N,N,N-trimethyl-L-alanine
annotated property: has_exact_synonym
annotated target: N,N,N-trimethyl-L-alanine
has_synonym_type: Name from RESID

Axiom
annotated source: N,N,N-trimethyl-L-alanine
annotated property: has_exact_synonym
annotated target: N,N,N-trimethylalanine cation
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N,N,N-trimethyl-L-alanine
annotated property: has_exact_synonym
annotated target: N,N,N-trimethylalaninium
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N,N,N-trimethyl-L-alanine
annotated property: has_exact_synonym
annotated target: N,N,N-trimethylated L-alanine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: N,N,N-trimethyl-L-alanine
annotated property: has_exact_synonym
annotated target: N2Me3+Ala
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: N,N,N-trimethyl-L-alanine
annotated property: has_exact_synonym
annotated target: NMe3Ala
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: N,N,N-trimethyl-L-alanine
annotated property: has_related_synonym
annotated target: Trimethyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: N,N,N-trimethyl-L-alanine
annotated property: has_related_synonym
annotated target: tri-Methylation
has_synonym_type: Description (full_name) from Unimod

N-methylglycine
type: Class
subclass of: residues isobaric at 71.037114 Da
subclass of: MOD_00714
subclass of: MOD_01680
definition: A protein modification that effectively converts a glycine residue to N-methylglycine.
diff avg: 14.03
diff formula: C 1 H 2 N 0 O 0
diff mono: 14.01565
formula: C 3 H 5 N 1 O 1
mass avg: 71.08
mass mono: 71.03712
origin: G
source: natural
term spec: N-term
database_cross_reference: uniprot.ptm:PTM-0483
has_exact_synonym: L-sarcosine
has_exact_synonym: MOD_RES N-methylglycine
has_exact_synonym: N-methylated glycine
has_exact_synonym: N-methylglycine
has_exact_synonym: NMe1Gly
has_exact_synonym: Sar
has_exact_synonym: Sarcosine
has_exact_synonym: Sarcosyl
has_exact_synonym: methylaminoacetic acid
has_exact_synonym: methylaminoethanoic acid
has_obo_namespace: PSI-MOD
has_related_synonym: Methyl
has_related_synonym: Methylation
id: MOD:00072
comment: DeltaMass also has an entry for the free amino acid. Polypeptides with monomethylated amino terminals can undergo premature cleavage during the coupling step of an Edman degradation. This can result in "preview" with both a residue and the following residue being seen from the first step on through a sequence [JSG].

Axiom
annotated source: N-methylglycine
annotated property: definition
annotated target: A protein modification that effectively converts a glycine residue to N-methylglycine.
database_cross_reference: ChEBI:15611
database_cross_reference: DeltaMass:0
database_cross_reference: PubMed:1593629
database_cross_reference: RESID:AA0063

Axiom
annotated source: N-methylglycine
annotated property: has_exact_synonym
annotated target: L-sarcosine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-methylglycine
annotated property: has_exact_synonym
annotated target: MOD_RES N-methylglycine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N-methylglycine
annotated property: has_exact_synonym
annotated target: N-methylated glycine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: N-methylglycine
annotated property: has_exact_synonym
annotated target: N-methylglycine
has_synonym_type: Name from RESID

Axiom
annotated source: N-methylglycine
annotated property: has_exact_synonym
annotated target: NMe1Gly
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: N-methylglycine
annotated property: has_exact_synonym
annotated target: Sar
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: N-methylglycine
annotated property: has_exact_synonym
annotated target: Sarcosine
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: N-methylglycine
annotated property: has_exact_synonym
annotated target: Sarcosyl
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: N-methylglycine
annotated property: has_exact_synonym
annotated target: methylaminoacetic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-methylglycine
annotated property: has_exact_synonym
annotated target: methylaminoethanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N-methylglycine
annotated property: has_related_synonym
annotated target: Methyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: N-methylglycine
annotated property: has_related_synonym
annotated target: Methylation
has_synonym_type: Description (full_name) from Unimod

N-methyl-L-methionine
type: Class
subclass of: MOD_01463
subclass of: MOD_01680
definition: A protein modification that effectively converts an L-methionine residue to N-methyl-L-methionine.
diff avg: 14.03
diff formula: C 1 H 2 N 0 O 0 S 0
diff mono: 14.01565
formula: C 6 H 11 N 1 O 1 S 1
mass avg: 145.22
mass mono: 145.05614
origin: M
source: natural
term spec: N-term
database_cross_reference: uniprot.ptm:PTM-0217
has_exact_synonym: (2S)-2-methylamino-4-(methylsulfanyl)butanoic acid
has_exact_synonym: 2-methylamino-4-(methylthio)butanoic acid
has_exact_synonym: MOD_RES N-methylmethionine
has_exact_synonym: Methyl Methionyl
has_exact_synonym: N-methyl-L-methionine
has_exact_synonym: N-methylated L-methionine
has_exact_synonym: N-methylmethionine
has_exact_synonym: NMe1Met
has_obo_namespace: PSI-MOD
has_related_synonym: Methyl
has_related_synonym: Methylation
id: MOD:00073
in_subset: PSI-MOD-slim
comment: Polypeptides with monomethylated amino terminals can undergo premature cleavage during the coupling step of an Edman degradation. This can result in "preview" with both a residue and the following residue being seen from the first step on through a sequence [JSG].

Axiom
annotated source: N-methyl-L-methionine
annotated property: definition
annotated target: A protein modification that effectively converts an L-methionine residue to N-methyl-L-methionine.
database_cross_reference: DeltaMass:169
database_cross_reference: PubMed:323502
database_cross_reference: PubMed:3298225
database_cross_reference: RESID:AA0064

Axiom
annotated source: N-methyl-L-methionine
annotated property: has_exact_synonym
annotated target: (2S)-2-methylamino-4-(methylsulfanyl)butanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N-methyl-L-methionine
annotated property: has_exact_synonym
annotated target: 2-methylamino-4-(methylthio)butanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-methyl-L-methionine
annotated property: has_exact_synonym
annotated target: MOD_RES N-methylmethionine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N-methyl-L-methionine
annotated property: has_exact_synonym
annotated target: Methyl Methionyl
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: N-methyl-L-methionine
annotated property: has_exact_synonym
annotated target: N-methyl-L-methionine
has_synonym_type: Name from RESID

Axiom
annotated source: N-methyl-L-methionine
annotated property: has_exact_synonym
annotated target: N-methylated L-methionine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: N-methyl-L-methionine
annotated property: has_exact_synonym
annotated target: N-methylmethionine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-methyl-L-methionine
annotated property: has_exact_synonym
annotated target: NMe1Met
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: N-methyl-L-methionine
annotated property: has_related_synonym
annotated target: Methyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: N-methyl-L-methionine
annotated property: has_related_synonym
annotated target: Methylation
has_synonym_type: Description (full_name) from Unimod

N-methyl-L-phenylalanine
type: Class
subclass of: MOD_01063
subclass of: MOD_01680
definition: A protein modification that effectively converts an L-phenylalanine residue to N-methyl-L-phenylalanine.
diff avg: 14.03
diff formula: C 1 H 2 N 0 O 0
diff mono: 14.01565
formula: C 10 H 11 N 1 O 1
mass avg: 161.2
mass mono: 161.08406
origin: F
source: natural
term spec: N-term
database_cross_reference: uniprot.ptm:PTM-0218
has_exact_synonym: (2S)-2-methylamino-3-phenylpropanoic acid
has_exact_synonym: MOD_RES N-methylphenylalanine
has_exact_synonym: N-methyl-L-phenylalanine
has_exact_synonym: N-methylated L-phenylalanine
has_exact_synonym: N-methylphenylalanine
has_exact_synonym: NMe1Phe
has_obo_namespace: PSI-MOD
has_related_synonym: Methyl
has_related_synonym: Methylation
id: MOD:00074
in_subset: PSI-MOD-slim
comment: Polypeptides with monomethylated amino terminals can undergo premature cleavage during the coupling step of an Edman degradation. This can result in "preview" with both a residue and the following residue being seen from the first step on through a sequence [JSG].

Axiom
annotated source: N-methyl-L-phenylalanine
annotated property: definition
annotated target: A protein modification that effectively converts an L-phenylalanine residue to N-methyl-L-phenylalanine.
database_cross_reference: PubMed:2577730
database_cross_reference: PubMed:413571
database_cross_reference: RESID:AA0065

Axiom
annotated source: N-methyl-L-phenylalanine
annotated property: has_exact_synonym
annotated target: (2S)-2-methylamino-3-phenylpropanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N-methyl-L-phenylalanine
annotated property: has_exact_synonym
annotated target: MOD_RES N-methylphenylalanine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N-methyl-L-phenylalanine
annotated property: has_exact_synonym
annotated target: N-methyl-L-phenylalanine
has_synonym_type: Name from RESID

Axiom
annotated source: N-methyl-L-phenylalanine
annotated property: has_exact_synonym
annotated target: N-methylated L-phenylalanine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: N-methyl-L-phenylalanine
annotated property: has_exact_synonym
annotated target: N-methylphenylalanine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-methyl-L-phenylalanine
annotated property: has_exact_synonym
annotated target: NMe1Phe
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: N-methyl-L-phenylalanine
annotated property: has_related_synonym
annotated target: Methyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: N-methyl-L-phenylalanine
annotated property: has_related_synonym
annotated target: Methylation
has_synonym_type: Description (full_name) from Unimod

N,N-dimethyl-L-proline
type: Class
subclass of: MOD_00710
subclass of: MOD_01462
definition: A protein modification that effectively converts an L-proline residue to N,N-dimethyl-L-proline.
diff avg: 29.06
diff formula: C 2 H 5 N 0 O 0
diff mono: 29.038576
formal charge: 1+
formula: C 7 H 13 N 1 O 1
mass avg: 127.19
mass mono: 127.09917
origin: P
source: natural
term spec: N-term
database_cross_reference: Unimod:529
database_cross_reference: uniprot.ptm:PTM-0179
has_exact_synonym: (2S)-2-carboxy-1,1-dimethylpyrrolidinium
has_exact_synonym: 1,1-dimethyl-L-prolinium
has_exact_synonym: MOD_RES N,N-dimethylproline
has_exact_synonym: N,N-dimethyl-L-proline
has_exact_synonym: N,N-dimethyl-L-prolinium
has_exact_synonym: N,N-dimethylated L-proline
has_exact_synonym: NMe2Pro
has_exact_synonym: stachydrin
has_obo_namespace: PSI-MOD
has_related_synonym: Delta:H(5)C(2)
has_related_synonym: Dimethyl
has_related_synonym: Dimethylation of proline residue
id: MOD:00075
in_subset: PSI-MOD-slim
comment: Unimod terminal specification corrected [JSG].

Axiom
annotated source: N,N-dimethyl-L-proline
annotated property: definition
annotated target: A protein modification that effectively converts an L-proline residue to N,N-dimethyl-L-proline.
database_cross_reference: ChEBI:21451
database_cross_reference: PubMed:12964758
database_cross_reference: PubMed:14570711
database_cross_reference: PubMed:193025
database_cross_reference: PubMed:3882426
database_cross_reference: PubMed:6254758
database_cross_reference: RESID:AA0066
database_cross_reference: Unimod:529

Axiom
annotated source: N,N-dimethyl-L-proline
annotated property: has_exact_synonym
annotated target: (2S)-2-carboxy-1,1-dimethylpyrrolidinium
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N,N-dimethyl-L-proline
annotated property: has_exact_synonym
annotated target: 1,1-dimethyl-L-prolinium
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N,N-dimethyl-L-proline
annotated property: has_exact_synonym
annotated target: MOD_RES N,N-dimethylproline
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N,N-dimethyl-L-proline
annotated property: has_exact_synonym
annotated target: N,N-dimethyl-L-proline
has_synonym_type: Name from RESID

Axiom
annotated source: N,N-dimethyl-L-proline
annotated property: has_exact_synonym
annotated target: N,N-dimethyl-L-prolinium
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N,N-dimethyl-L-proline
annotated property: has_exact_synonym
annotated target: N,N-dimethylated L-proline
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: N,N-dimethyl-L-proline
annotated property: has_exact_synonym
annotated target: NMe2Pro
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: N,N-dimethyl-L-proline
annotated property: has_exact_synonym
annotated target: stachydrin
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N,N-dimethyl-L-proline
annotated property: has_related_synonym
annotated target: Delta:H(5)C(2)
has_synonym_type: Interim label from Unimod

Axiom
annotated source: N,N-dimethyl-L-proline
annotated property: has_related_synonym
annotated target: Dimethyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: N,N-dimethyl-L-proline
annotated property: has_related_synonym
annotated target: Dimethylation of proline residue
has_synonym_type: Description (full_name) from Unimod

symmetric dimethyl-L-arginine
type: Class
subclass of: N-methylated residue
subclass of: MOD_00783
definition: A protein modification that effectively converts an L-arginine residue to symmetric dimethylarginine, N(omega),N'(omega)-dimethyl-L-arginine.
diff avg: 28.05
diff formula: C 2 H 4 N 0 O 0
diff mono: 28.0313
formula: C 8 H 16 N 4 O 1
mass avg: 184.24
mass mono: 184.13242
origin: R
source: natural
database_cross_reference: Unimod:36
database_cross_reference: uniprot.ptm:PTM-0287
has_exact_synonym: (2S)-2-amino-5-[((methylamino)(methylimino)methyl)amino]pentanoic acid
has_exact_synonym: MOD_RES Omega-N-methylated arginine
has_exact_synonym: MOD_RES Symmetric dimethylarginine
has_exact_synonym: N3,N4-dimethylarginine
has_exact_synonym: NG,N'G-dimethylarginine
has_exact_synonym: NoNo'Me2Arg
has_exact_synonym: omega-N,omega-N'-dimethyl-L-arginine
has_exact_synonym: omega-N,omega-N'-dimethylated L-arginine
has_exact_synonym: symmetric dimethylarginine
has_obo_namespace: PSI-MOD
has_related_synonym: Dimethyl
has_related_synonym: di-Methylation
id: MOD:00076
in_subset: PSI-MOD-slim

Axiom
annotated source: symmetric dimethyl-L-arginine
annotated property: definition
annotated target: A protein modification that effectively converts an L-arginine residue to symmetric dimethylarginine, N(omega),N'(omega)-dimethyl-L-arginine.
database_cross_reference: PubMed:12964758
database_cross_reference: PubMed:14570711
database_cross_reference: PubMed:15835918
database_cross_reference: PubMed:2426402
database_cross_reference: PubMed:5128665
database_cross_reference: RESID:AA0067
database_cross_reference: Unimod:36#R

Axiom
annotated source: symmetric dimethyl-L-arginine
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-5-[((methylamino)(methylimino)methyl)amino]pentanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: symmetric dimethyl-L-arginine
annotated property: has_exact_synonym
annotated target: MOD_RES Omega-N-methylated arginine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: symmetric dimethyl-L-arginine
annotated property: has_exact_synonym
annotated target: MOD_RES Symmetric dimethylarginine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: symmetric dimethyl-L-arginine
annotated property: has_exact_synonym
annotated target: N3,N4-dimethylarginine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: symmetric dimethyl-L-arginine
annotated property: has_exact_synonym
annotated target: NG,N'G-dimethylarginine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: symmetric dimethyl-L-arginine
annotated property: has_exact_synonym
annotated target: NoNo'Me2Arg
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: symmetric dimethyl-L-arginine
annotated property: has_exact_synonym
annotated target: omega-N,omega-N'-dimethyl-L-arginine
has_synonym_type: Name from RESID

Axiom
annotated source: symmetric dimethyl-L-arginine
annotated property: has_exact_synonym
annotated target: omega-N,omega-N'-dimethylated L-arginine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: symmetric dimethyl-L-arginine
annotated property: has_exact_synonym
annotated target: symmetric dimethylarginine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: symmetric dimethyl-L-arginine
annotated property: has_related_synonym
annotated target: Dimethyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: symmetric dimethyl-L-arginine
annotated property: has_related_synonym
annotated target: di-Methylation
has_synonym_type: Description (full_name) from Unimod

asymmetric dimethyl-L-arginine
type: Class
subclass of: N-methylated residue
subclass of: MOD_00783
definition: A protein modification that effectively converts an L-arginine residue to asymmetric dimethylarginine, N(omega),N(omega)-dimethyl-L-arginine.
diff avg: 28.05
diff formula: C 2 H 4 N 0 O 0
diff mono: 28.0313
formula: C 8 H 16 N 4 O 1
mass avg: 184.24
mass mono: 184.13242
origin: R
source: natural
database_cross_reference: Unimod:36
database_cross_reference: uniprot.ptm:PTM-0066
has_exact_synonym: (2S)-2-amino-5-([(dimethylamino)(imino)methyl]amino)pentanoic acid
has_exact_synonym: MOD_RES Asymmetric dimethylarginine
has_exact_synonym: MOD_RES Omega-N-methylated arginine
has_exact_synonym: N5-[(dimethylamino)(imino)methyl]ornithine
has_exact_synonym: NG,NG-dimethylarginine
has_exact_synonym: NoNoMe2Arg
has_exact_synonym: asymmetric dimethylarginine
has_exact_synonym: omega-N,omega-N-dimethlyated L-arginine
has_exact_synonym: omega-N,omega-N-dimethyl-L-arginine
has_obo_namespace: PSI-MOD
has_related_synonym: Dimethyl
has_related_synonym: di-Methylation
id: MOD:00077
in_subset: PSI-MOD-slim

Axiom
annotated source: asymmetric dimethyl-L-arginine
annotated property: definition
annotated target: A protein modification that effectively converts an L-arginine residue to asymmetric dimethylarginine, N(omega),N(omega)-dimethyl-L-arginine.
database_cross_reference: ChEBI:17929
database_cross_reference: PubMed:11152131
database_cross_reference: PubMed:12964758
database_cross_reference: PubMed:14570711
database_cross_reference: PubMed:15835918
database_cross_reference: PubMed:3032834
database_cross_reference: RESID:AA0068
database_cross_reference: Unimod:36#R

Axiom
annotated source: asymmetric dimethyl-L-arginine
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-5-([(dimethylamino)(imino)methyl]amino)pentanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: asymmetric dimethyl-L-arginine
annotated property: has_exact_synonym
annotated target: MOD_RES Asymmetric dimethylarginine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: asymmetric dimethyl-L-arginine
annotated property: has_exact_synonym
annotated target: MOD_RES Omega-N-methylated arginine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: asymmetric dimethyl-L-arginine
annotated property: has_exact_synonym
annotated target: N5-[(dimethylamino)(imino)methyl]ornithine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: asymmetric dimethyl-L-arginine
annotated property: has_exact_synonym
annotated target: NG,NG-dimethylarginine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: asymmetric dimethyl-L-arginine
annotated property: has_exact_synonym
annotated target: NoNoMe2Arg
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: asymmetric dimethyl-L-arginine
annotated property: has_exact_synonym
annotated target: asymmetric dimethylarginine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: asymmetric dimethyl-L-arginine
annotated property: has_exact_synonym
annotated target: omega-N,omega-N-dimethlyated L-arginine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: asymmetric dimethyl-L-arginine
annotated property: has_exact_synonym
annotated target: omega-N,omega-N-dimethyl-L-arginine
has_synonym_type: Name from RESID

Axiom
annotated source: asymmetric dimethyl-L-arginine
annotated property: has_related_synonym
annotated target: Dimethyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: asymmetric dimethyl-L-arginine
annotated property: has_related_synonym
annotated target: di-Methylation
has_synonym_type: Description (full_name) from Unimod

omega-N-methyl-L-arginine
type: Class
subclass of: monomethylated L-arginine
subclass of: N-methylated residue
definition: A protein modification that effectively converts an L-arginine residue to N(omega)-methyl-L-arginine.
diff avg: 14.03
diff formula: C 1 H 2 N 0 O 0
diff mono: 14.01565
formula: C 7 H 14 N 4 O 1
mass avg: 170.22
mass mono: 170.11676
origin: R
source: natural
database_cross_reference: uniprot.ptm:PTM-0237
has_exact_synonym: (2S)-2-amino-5-[(imino(methylamino)methyl)amino]pentanoic acid
has_exact_synonym: MOD_RES Omega-N-methylarginine
has_exact_synonym: MOD_RES Omega-N-methylated arginine
has_exact_synonym: NG-methylarginine
has_exact_synonym: NoMeArg
has_exact_synonym: omega-N-methyl-L-arginine
has_exact_synonym: omega-N-methylated L-arginine
has_obo_namespace: PSI-MOD
has_related_synonym: Methyl
has_related_synonym: Methylation
id: MOD:00078
in_subset: PSI-MOD-slim

Axiom
annotated source: omega-N-methyl-L-arginine
annotated property: definition
annotated target: A protein modification that effectively converts an L-arginine residue to N(omega)-methyl-L-arginine.
database_cross_reference: PubMed:11875433
database_cross_reference: PubMed:15835918
database_cross_reference: PubMed:2426402
database_cross_reference: PubMed:5128665
database_cross_reference: RESID:AA0069

Axiom
annotated source: omega-N-methyl-L-arginine
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-5-[(imino(methylamino)methyl)amino]pentanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: omega-N-methyl-L-arginine
annotated property: has_exact_synonym
annotated target: MOD_RES Omega-N-methylarginine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: omega-N-methyl-L-arginine
annotated property: has_exact_synonym
annotated target: MOD_RES Omega-N-methylated arginine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: omega-N-methyl-L-arginine
annotated property: has_exact_synonym
annotated target: NG-methylarginine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: omega-N-methyl-L-arginine
annotated property: has_exact_synonym
annotated target: NoMeArg
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: omega-N-methyl-L-arginine
annotated property: has_exact_synonym
annotated target: omega-N-methyl-L-arginine
has_synonym_type: Name from RESID

Axiom
annotated source: omega-N-methyl-L-arginine
annotated property: has_exact_synonym
annotated target: omega-N-methylated L-arginine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: omega-N-methyl-L-arginine
annotated property: has_related_synonym
annotated target: Methyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: omega-N-methyl-L-arginine
annotated property: has_related_synonym
annotated target: Methylation
has_synonym_type: Description (full_name) from Unimod

N4-methyl-L-asparagine
type: Class
subclass of: monomethylated residue
subclass of: N-methylated residue
subclass of: MOD_00673
subclass of: MOD_00894
definition: A protein modification that effectively converts an L-asparagine residue to N4-methyl-L-asparagine.
diff avg: 14.03
diff formula: C 1 H 2 N 0 O 0
diff mono: 14.01565
formula: C 5 H 8 N 2 O 2
mass avg: 128.13
mass mono: 128.05858
origin: N
source: natural
database_cross_reference: Unimod:34
database_cross_reference: uniprot.ptm:PTM-0183
has_exact_synonym: (2S)-2-amino-N4-methylbutanediamic acid
has_exact_synonym: MOD_RES N4-methylasparagine
has_exact_synonym: N(gamma)-methylasparagine
has_exact_synonym: N-methylasparagine
has_exact_synonym: N4-methyl-L-asparagine
has_exact_synonym: N4-methylated L-asparagine
has_exact_synonym: N4Me1Asn
has_exact_synonym: beta-aspartyl methylamide
has_exact_synonym: methyln
has_obo_namespace: PSI-MOD
has_related_synonym: Methyl
has_related_synonym: Methylation
has_related_synonym: beta-methylasparagine
id: MOD:00079
in_subset: PSI-MOD-slim

Axiom
annotated source: N4-methyl-L-asparagine
annotated property: definition
annotated target: A protein modification that effectively converts an L-asparagine residue to N4-methyl-L-asparagine.
database_cross_reference: OMSSA:75
database_cross_reference: PubMed:11875433
database_cross_reference: PubMed:2356973
database_cross_reference: PubMed:3782095
database_cross_reference: RESID:AA0070
database_cross_reference: Unimod:34#N

Axiom
annotated source: N4-methyl-L-asparagine
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-N4-methylbutanediamic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N4-methyl-L-asparagine
annotated property: has_exact_synonym
annotated target: MOD_RES N4-methylasparagine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N4-methyl-L-asparagine
annotated property: has_exact_synonym
annotated target: N(gamma)-methylasparagine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N4-methyl-L-asparagine
annotated property: has_exact_synonym
annotated target: N-methylasparagine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N4-methyl-L-asparagine
annotated property: has_exact_synonym
annotated target: N4-methyl-L-asparagine
has_synonym_type: Name from RESID

Axiom
annotated source: N4-methyl-L-asparagine
annotated property: has_exact_synonym
annotated target: N4-methylated L-asparagine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: N4-methyl-L-asparagine
annotated property: has_exact_synonym
annotated target: N4Me1Asn
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: N4-methyl-L-asparagine
annotated property: has_exact_synonym
annotated target: beta-aspartyl methylamide
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N4-methyl-L-asparagine
annotated property: has_exact_synonym
annotated target: methyln
has_synonym_type: Short label from OMSSA

Axiom
annotated source: N4-methyl-L-asparagine
annotated property: has_related_synonym
annotated target: Methyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: N4-methyl-L-asparagine
annotated property: has_related_synonym
annotated target: Methylation
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: N4-methyl-L-asparagine
annotated property: has_related_synonym
annotated target: beta-methylasparagine
has_synonym_type: Misnomer tagged alternate name from RESID

N5-methyl-L-glutamine
type: Class
subclass of: N-methylated residue
subclass of: MOD_00722
definition: A protein modification that effectively converts an L-glutamine residue to N5-methyl-L-glutamine.
diff avg: 14.03
diff formula: C 1 H 2 N 0 O 0
diff mono: 14.01565
formula: C 6 H 10 N 2 O 2
mass avg: 142.16
mass mono: 142.07423
origin: Q
source: natural
database_cross_reference: uniprot.ptm:PTM-0185
has_exact_synonym: (2S)-2-amino-5-methylamino-5-oxopentanoic acid
has_exact_synonym: 2-amino-N5-methylpentanediamic acid
has_exact_synonym: MOD_RES N5-methylglutamine
has_exact_synonym: N(delta)-methylglutamine
has_exact_synonym: N-methylglutamine
has_exact_synonym: N5-methyl-L-glutamine
has_exact_synonym: N5-methylated L-glutamine
has_exact_synonym: N5Me1Gln
has_exact_synonym: gamma-methylglutamine
has_obo_namespace: PSI-MOD
has_related_synonym: Methyl
has_related_synonym: Methylation
id: MOD:00080
in_subset: PSI-MOD-slim

Axiom
annotated source: N5-methyl-L-glutamine
annotated property: definition
annotated target: A protein modification that effectively converts an L-glutamine residue to N5-methyl-L-glutamine.
database_cross_reference: ChEBI:17592
database_cross_reference: DeltaMass:166
database_cross_reference: PubMed:11118225
database_cross_reference: PubMed:11875433
database_cross_reference: PubMed:365579
database_cross_reference: RESID:AA0071

Axiom
annotated source: N5-methyl-L-glutamine
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-5-methylamino-5-oxopentanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N5-methyl-L-glutamine
annotated property: has_exact_synonym
annotated target: 2-amino-N5-methylpentanediamic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N5-methyl-L-glutamine
annotated property: has_exact_synonym
annotated target: MOD_RES N5-methylglutamine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N5-methyl-L-glutamine
annotated property: has_exact_synonym
annotated target: N(delta)-methylglutamine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N5-methyl-L-glutamine
annotated property: has_exact_synonym
annotated target: N-methylglutamine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N5-methyl-L-glutamine
annotated property: has_exact_synonym
annotated target: N5-methyl-L-glutamine
has_synonym_type: Name from RESID

Axiom
annotated source: N5-methyl-L-glutamine
annotated property: has_exact_synonym
annotated target: N5-methylated L-glutamine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: N5-methyl-L-glutamine
annotated property: has_exact_synonym
annotated target: N5Me1Gln
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: N5-methyl-L-glutamine
annotated property: has_exact_synonym
annotated target: gamma-methylglutamine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N5-methyl-L-glutamine
annotated property: has_related_synonym
annotated target: Methyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: N5-methyl-L-glutamine
annotated property: has_related_synonym
annotated target: Methylation
has_synonym_type: Description (full_name) from Unimod

L-glutamic acid 5-methyl ester (Glu)
type: Class
subclass of: MOD_01453
definition: A protein modification that effectively converts an L-glutamic acid residue to L-glutamate 5-methyl ester.
diff avg: 14.03
diff formula: C 1 H 2 N 0 O 0
diff mono: 14.01565
formula: C 6 H 9 N 1 O 3
mass avg: 143.14
mass mono: 143.05824
origin: E
source: natural
database_cross_reference: Unimod:34
database_cross_reference: uniprot.ptm:PTM-0128
has_exact_synonym: (2S)-2-amino-5-methoxy-5-oxopentanoic acid
has_exact_synonym: (5)-methyl L-hydrogen glutamate
has_exact_synonym: 2-aminopentanedioic acid 5-methyl ester
has_exact_synonym: 5-methyl L-2-aminoglutarate
has_exact_synonym: 5-methyl L-glutamate
has_exact_synonym: 5-methyl esterified L-glutamic acid
has_exact_synonym: L-glutamic acid 5-methyl ester
has_exact_synonym: MOD_RES Glutamate methyl ester (Glu)
has_exact_synonym: O-methyl Glutamyl
has_exact_synonym: O5MeGlu
has_exact_synonym: glutamic acid 5-methyl ester
has_exact_synonym: glutamic acid gamma-methyl ester
has_exact_synonym: meestere
has_exact_synonym: methyle
has_obo_namespace: PSI-MOD
has_related_synonym: Methyl
has_related_synonym: Methylation
has_related_synonym: methyl ester
id: MOD:00081
in_subset: PSI-MOD-slim
comment: DeltaMass gives the formula "C 6 H 9 O 1 N 3" with mass 143 (formula incorrect, N and O reversed) [JSG].

Axiom
annotated source: L-glutamic acid 5-methyl ester (Glu)
annotated property: definition
annotated target: A protein modification that effectively converts an L-glutamic acid residue to L-glutamate 5-methyl ester.
database_cross_reference: DeltaMass:167
database_cross_reference: OMSSA:17
database_cross_reference: OMSSA:70
database_cross_reference: PubMed:16888
database_cross_reference: PubMed:6300110
database_cross_reference: RESID:AA0072#GLU
database_cross_reference: Unimod:34#E

Axiom
annotated source: L-glutamic acid 5-methyl ester (Glu)
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-5-methoxy-5-oxopentanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-glutamic acid 5-methyl ester (Glu)
annotated property: has_exact_synonym
annotated target: (5)-methyl L-hydrogen glutamate
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-glutamic acid 5-methyl ester (Glu)
annotated property: has_exact_synonym
annotated target: 2-aminopentanedioic acid 5-methyl ester
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-glutamic acid 5-methyl ester (Glu)
annotated property: has_exact_synonym
annotated target: 5-methyl L-2-aminoglutarate
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-glutamic acid 5-methyl ester (Glu)
annotated property: has_exact_synonym
annotated target: 5-methyl L-glutamate
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-glutamic acid 5-methyl ester (Glu)
annotated property: has_exact_synonym
annotated target: 5-methyl esterified L-glutamic acid
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: L-glutamic acid 5-methyl ester (Glu)
annotated property: has_exact_synonym
annotated target: L-glutamic acid 5-methyl ester
has_synonym_type: Name from RESID

Axiom
annotated source: L-glutamic acid 5-methyl ester (Glu)
annotated property: has_exact_synonym
annotated target: MOD_RES Glutamate methyl ester (Glu)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-glutamic acid 5-methyl ester (Glu)
annotated property: has_exact_synonym
annotated target: O-methyl Glutamyl
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: L-glutamic acid 5-methyl ester (Glu)
annotated property: has_exact_synonym
annotated target: O5MeGlu
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-glutamic acid 5-methyl ester (Glu)
annotated property: has_exact_synonym
annotated target: glutamic acid 5-methyl ester
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-glutamic acid 5-methyl ester (Glu)
annotated property: has_exact_synonym
annotated target: glutamic acid gamma-methyl ester
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-glutamic acid 5-methyl ester (Glu)
annotated property: has_exact_synonym
annotated target: meestere
has_synonym_type: Short label from OMSSA

Axiom
annotated source: L-glutamic acid 5-methyl ester (Glu)
annotated property: has_exact_synonym
annotated target: methyle
has_synonym_type: Short label from OMSSA

Axiom
annotated source: L-glutamic acid 5-methyl ester (Glu)
annotated property: has_related_synonym
annotated target: Methyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: L-glutamic acid 5-methyl ester (Glu)
annotated property: has_related_synonym
annotated target: Methylation
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: L-glutamic acid 5-methyl ester (Glu)
annotated property: has_related_synonym
annotated target: methyl ester
has_synonym_type: Alternate name from Unimod

3'-methyl-L-histidine
type: Class
subclass of: MOD_00724
subclass of: MOD_02038
definition: A protein modification that effectively converts an L-histidine residue to pros-methyl-L-histidine (N-pi-methyl-L-histidine, 3'-methyl-L-histidine).
diff avg: 14.03
diff formula: C 1 H 2 N 0 O 0
diff mono: 14.01565
formula: C 7 H 9 N 3 O 1
mass avg: 151.17
mass mono: 151.07455
origin: H
source: natural
database_cross_reference: uniprot.ptm:PTM-0259
has_exact_synonym: (2S)-2-amino-3-(3-methyl-3H-imidazol-4-yl)propanoic acid
has_exact_synonym: 3'-methyl-L-histidine
has_exact_synonym: MOD_RES Pros-methylhistidine
has_exact_synonym: N(delta)-methylhistidine
has_exact_synonym: N(pi)-methylhistidine
has_exact_synonym: NpMeHis
has_exact_synonym: pros-methylated L-histidine
has_exact_synonym: pros-methylhistidine
has_obo_namespace: PSI-MOD
has_related_synonym: 1-methylhistidine
has_related_synonym: Methyl
has_related_synonym: Methylation
id: MOD:00082
in_subset: PSI-MOD-slim

Axiom
annotated source: 3'-methyl-L-histidine
annotated property: definition
annotated target: A protein modification that effectively converts an L-histidine residue to pros-methyl-L-histidine (N-pi-methyl-L-histidine, 3'-methyl-L-histidine).
database_cross_reference: PubMed:10660523
database_cross_reference: PubMed:11875433
database_cross_reference: PubMed:3467365
database_cross_reference: PubMed:6692818
database_cross_reference: PubMed:8076
database_cross_reference: PubMed:8645219
database_cross_reference: RESID:AA0073

Axiom
annotated source: 3'-methyl-L-histidine
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-3-(3-methyl-3H-imidazol-4-yl)propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: 3'-methyl-L-histidine
annotated property: has_exact_synonym
annotated target: 3'-methyl-L-histidine
has_synonym_type: Name from RESID

Axiom
annotated source: 3'-methyl-L-histidine
annotated property: has_exact_synonym
annotated target: MOD_RES Pros-methylhistidine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: 3'-methyl-L-histidine
annotated property: has_exact_synonym
annotated target: N(delta)-methylhistidine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 3'-methyl-L-histidine
annotated property: has_exact_synonym
annotated target: N(pi)-methylhistidine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 3'-methyl-L-histidine
annotated property: has_exact_synonym
annotated target: NpMeHis
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: 3'-methyl-L-histidine
annotated property: has_exact_synonym
annotated target: pros-methylated L-histidine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: 3'-methyl-L-histidine
annotated property: has_exact_synonym
annotated target: pros-methylhistidine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 3'-methyl-L-histidine
annotated property: has_related_synonym
annotated target: 1-methylhistidine
has_synonym_type: Misnomer tagged alternate name from RESID

Axiom
annotated source: 3'-methyl-L-histidine
annotated property: has_related_synonym
annotated target: Methyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: 3'-methyl-L-histidine
annotated property: has_related_synonym
annotated target: Methylation
has_synonym_type: Description (full_name) from Unimod

N6,N6,N6-trimethyl-L-lysine
type: Class
subclass of: N-methylated residue
subclass of: MOD_00663
subclass of: MOD_00711
definition: A protein modification that effectively converts an L-lysine residue to N6,N6,N6-trimethyl-L-lysine.
diff avg: 43.09
diff formula: C 3 H 7 N 0 O 0
diff mono: 43.054226
formal charge: 1+
formula: C 9 H 19 N 2 O 1
mass avg: 171.26
mass mono: 171.14919
origin: K
source: natural
database_cross_reference: uniprot.ptm:PTM-0187
has_exact_synonym: (5S)-5-amino-5-carboxy-N,N,N-trimethylpentan-1-aminium
has_exact_synonym: 2-amino-6-(trimethylammonio)hexanoic acid
has_exact_synonym: 5-azanyl-5-carboxy-N,N,N-trimethylpentanazanium
has_exact_synonym: MOD_RES N6,N6,N6-trimethyllysine
has_exact_synonym: N(zeta)-trimethyllysine
has_exact_synonym: N-trimethylation (of lysine)
has_exact_synonym: N6,N6,N6-trimethyl-L-lysine
has_exact_synonym: N6,N6,N6-trimethylated L-lysine
has_exact_synonym: N6,N6,N6-trimethyllysin-N6-ium
has_exact_synonym: N6,N6,N6-trimethyllysine cation
has_exact_synonym: N6Me3+Lys
has_exact_synonym: epsilon-trimethyllysine
has_obo_namespace: PSI-MOD
has_related_synonym: Trimethyl
has_related_synonym: tri-Methylation
id: MOD:00083
in_subset: PSI-MOD-slim
comment: DeltaMass calculates the mass difference from protonated lysine rather than neutral lysine; for trimethylated lysine starting from protonated lysine see MOD:00855

Axiom
annotated source: N6,N6,N6-trimethyl-L-lysine
annotated property: definition
annotated target: A protein modification that effectively converts an L-lysine residue to N6,N6,N6-trimethyl-L-lysine.
database_cross_reference: ChEBI:17311
database_cross_reference: PubMed:12590383
database_cross_reference: PubMed:3145979
database_cross_reference: PubMed:4304194
database_cross_reference: PubMed:6778808
database_cross_reference: PubMed:7093227
database_cross_reference: PubMed:8453381
database_cross_reference: RESID:AA0074

Axiom
annotated source: N6,N6,N6-trimethyl-L-lysine
annotated property: has_exact_synonym
annotated target: (5S)-5-amino-5-carboxy-N,N,N-trimethylpentan-1-aminium
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N6,N6,N6-trimethyl-L-lysine
annotated property: has_exact_synonym
annotated target: 2-amino-6-(trimethylammonio)hexanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N6,N6,N6-trimethyl-L-lysine
annotated property: has_exact_synonym
annotated target: 5-azanyl-5-carboxy-N,N,N-trimethylpentanazanium
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N6,N6,N6-trimethyl-L-lysine
annotated property: has_exact_synonym
annotated target: MOD_RES N6,N6,N6-trimethyllysine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N6,N6,N6-trimethyl-L-lysine
annotated property: has_exact_synonym
annotated target: N(zeta)-trimethyllysine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N6,N6,N6-trimethyl-L-lysine
annotated property: has_exact_synonym
annotated target: N-trimethylation (of lysine)
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: N6,N6,N6-trimethyl-L-lysine
annotated property: has_exact_synonym
annotated target: N6,N6,N6-trimethyl-L-lysine
has_synonym_type: Name from RESID

Axiom
annotated source: N6,N6,N6-trimethyl-L-lysine
annotated property: has_exact_synonym
annotated target: N6,N6,N6-trimethylated L-lysine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: N6,N6,N6-trimethyl-L-lysine
annotated property: has_exact_synonym
annotated target: N6,N6,N6-trimethyllysin-N6-ium
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N6,N6,N6-trimethyl-L-lysine
annotated property: has_exact_synonym
annotated target: N6,N6,N6-trimethyllysine cation
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N6,N6,N6-trimethyl-L-lysine
annotated property: has_exact_synonym
annotated target: N6Me3+Lys
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: N6,N6,N6-trimethyl-L-lysine
annotated property: has_exact_synonym
annotated target: epsilon-trimethyllysine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N6,N6,N6-trimethyl-L-lysine
annotated property: has_related_synonym
annotated target: Trimethyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: N6,N6,N6-trimethyl-L-lysine
annotated property: has_related_synonym
annotated target: tri-Methylation
has_synonym_type: Description (full_name) from Unimod

N6,N6-dimethyl-L-lysine
type: Class
subclass of: dimethylated residue
subclass of: N-methylated residue
subclass of: MOD_00663
definition: A protein modification that effectively converts an L-lysine residue to N6,N6-dimethyl-L-lysine.
diff avg: 28.05
diff formula: C 2 H 4 N 0 O 0
diff mono: 28.0313
formula: C 8 H 16 N 2 O 1
mass avg: 156.23
mass mono: 156.12627
origin: K
source: natural
database_cross_reference: Unimod:36
database_cross_reference: uniprot.ptm:PTM-0188
has_exact_synonym: (2S)-2-amino-6-(dimethylamino)hexanoic acid
has_exact_synonym: MOD_RES N6,N6-dimethyllysine
has_exact_synonym: N(zeta)-dimethyllysine
has_exact_synonym: N6,N6-dimethyl-L-lysine
has_exact_synonym: N6,N6-dimethylated L-lysine
has_exact_synonym: N6Me2Lys
has_exact_synonym: dimethylk
has_exact_synonym: epsilon-dimethyllysine
has_exact_synonym: lysine derivative Lys(y)
has_obo_namespace: PSI-MOD
has_related_synonym: Dimethyl
has_related_synonym: di-Methylation
id: MOD:00084
in_subset: PSI-MOD-slim

Axiom
annotated source: N6,N6-dimethyl-L-lysine
annotated property: definition
annotated target: A protein modification that effectively converts an L-lysine residue to N6,N6-dimethyl-L-lysine.
database_cross_reference: OMSSA:36
database_cross_reference: PubMed:10550045
database_cross_reference: PubMed:12964758
database_cross_reference: PubMed:14570711
database_cross_reference: PubMed:3100523
database_cross_reference: PubMed:8453381
database_cross_reference: RESID:AA0075
database_cross_reference: Unimod:36#K

Axiom
annotated source: N6,N6-dimethyl-L-lysine
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-6-(dimethylamino)hexanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N6,N6-dimethyl-L-lysine
annotated property: has_exact_synonym
annotated target: MOD_RES N6,N6-dimethyllysine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N6,N6-dimethyl-L-lysine
annotated property: has_exact_synonym
annotated target: N(zeta)-dimethyllysine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N6,N6-dimethyl-L-lysine
annotated property: has_exact_synonym
annotated target: N6,N6-dimethyl-L-lysine
has_synonym_type: Name from RESID

Axiom
annotated source: N6,N6-dimethyl-L-lysine
annotated property: has_exact_synonym
annotated target: N6,N6-dimethylated L-lysine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: N6,N6-dimethyl-L-lysine
annotated property: has_exact_synonym
annotated target: N6Me2Lys
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: N6,N6-dimethyl-L-lysine
annotated property: has_exact_synonym
annotated target: dimethylk
has_synonym_type: Short label from OMSSA

Axiom
annotated source: N6,N6-dimethyl-L-lysine
annotated property: has_exact_synonym
annotated target: epsilon-dimethyllysine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N6,N6-dimethyl-L-lysine
annotated property: has_exact_synonym
annotated target: lysine derivative Lys(y)
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N6,N6-dimethyl-L-lysine
annotated property: has_related_synonym
annotated target: Dimethyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: N6,N6-dimethyl-L-lysine
annotated property: has_related_synonym
annotated target: di-Methylation
has_synonym_type: Description (full_name) from Unimod

N6-methyl-L-lysine
type: Class
subclass of: N-methylated residue
subclass of: MOD_01683
definition: A protein modification that effectively converts an L-lysine residue to N6-methyl-L-lysine.
diff avg: 14.03
diff formula: C 1 H 2 N 0 O 0
diff mono: 14.01565
formula: C 7 H 14 N 2 O 1
mass avg: 142.2
mass mono: 142.11061
origin: K
source: natural
database_cross_reference: Unimod:34
database_cross_reference: uniprot.ptm:PTM-0194
has_exact_synonym: (2S)-2-amino-6-methylaminohexanoic acid
has_exact_synonym: MOD_RES N6-methyllysine
has_exact_synonym: N(zeta)-methyllysine
has_exact_synonym: N-methyl Lysyl
has_exact_synonym: N6-methyl-L-lysine
has_exact_synonym: N6-methylated L-lysine
has_exact_synonym: N6Me1Lys
has_exact_synonym: epsilon-methyllysine
has_obo_namespace: PSI-MOD
has_related_synonym: Methyl
has_related_synonym: Methylation
id: MOD:00085
in_subset: PSI-MOD-slim

Axiom
annotated source: N6-methyl-L-lysine
annotated property: definition
annotated target: A protein modification that effectively converts an L-lysine residue to N6-methyl-L-lysine.
database_cross_reference: ChEBI:17604
database_cross_reference: DeltaMass:165
database_cross_reference: PubMed:11875433
database_cross_reference: PubMed:3926756
database_cross_reference: RESID:AA0076
database_cross_reference: Unimod:34#K

Axiom
annotated source: N6-methyl-L-lysine
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-6-methylaminohexanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N6-methyl-L-lysine
annotated property: has_exact_synonym
annotated target: MOD_RES N6-methyllysine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N6-methyl-L-lysine
annotated property: has_exact_synonym
annotated target: N(zeta)-methyllysine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N6-methyl-L-lysine
annotated property: has_exact_synonym
annotated target: N-methyl Lysyl
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: N6-methyl-L-lysine
annotated property: has_exact_synonym
annotated target: N6-methyl-L-lysine
has_synonym_type: Name from RESID

Axiom
annotated source: N6-methyl-L-lysine
annotated property: has_exact_synonym
annotated target: N6-methylated L-lysine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: N6-methyl-L-lysine
annotated property: has_exact_synonym
annotated target: N6Me1Lys
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: N6-methyl-L-lysine
annotated property: has_exact_synonym
annotated target: epsilon-methyllysine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N6-methyl-L-lysine
annotated property: has_related_synonym
annotated target: Methyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: N6-methyl-L-lysine
annotated property: has_related_synonym
annotated target: Methylation
has_synonym_type: Description (full_name) from Unimod

N6-palmitoyl-L-lysine
type: Class
subclass of: N-palmitoylated residue
subclass of: MOD_01875
definition: A protein modification that effectively converts an L-lysine residue to N6-palmitoyl-L-lysine.
diff avg: 238.41
diff formula: C 16 H 30 N 0 O 1
diff mono: 238.22966
formula: C 22 H 42 N 2 O 2
mass avg: 366.59
mass mono: 366.32462
origin: K
source: natural
database_cross_reference: Unimod:47
database_cross_reference: uniprot.ptm:PTM-0197
has_exact_synonym: (2S)-2-amino-6-(hexadecanoylamino)hexanoic acid
has_exact_synonym: 2-amino-6-(hexadecanamido)hexanoic acid
has_exact_synonym: LIPID N6-palmitoyl lysine
has_exact_synonym: N(zeta)-palmitoyllysine
has_exact_synonym: N6-(1-oxohexadecyl)-L-lysine
has_exact_synonym: N6-hexadecanoylated L-lysine
has_exact_synonym: N6-palmitoyl-L-lysine
has_exact_synonym: N6-palmitoylated L-lysine
has_exact_synonym: N6PamLys
has_exact_synonym: epsilon-palmitoyllysine
has_exact_synonym: palmitoylationk
has_obo_namespace: PSI-MOD
has_related_synonym: Palmitoyl
has_related_synonym: Palmitoylation
id: MOD:00086
in_subset: PSI-MOD-slim

Axiom
annotated source: N6-palmitoyl-L-lysine
annotated property: definition
annotated target: A protein modification that effectively converts an L-lysine residue to N6-palmitoyl-L-lysine.
database_cross_reference: OMSSA:93
database_cross_reference: PubMed:2498336
database_cross_reference: PubMed:7801126
database_cross_reference: PubMed:7939682
database_cross_reference: RESID:AA0077
database_cross_reference: Unimod:47#K

Axiom
annotated source: N6-palmitoyl-L-lysine
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-6-(hexadecanoylamino)hexanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N6-palmitoyl-L-lysine
annotated property: has_exact_synonym
annotated target: 2-amino-6-(hexadecanamido)hexanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N6-palmitoyl-L-lysine
annotated property: has_exact_synonym
annotated target: LIPID N6-palmitoyl lysine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N6-palmitoyl-L-lysine
annotated property: has_exact_synonym
annotated target: N(zeta)-palmitoyllysine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N6-palmitoyl-L-lysine
annotated property: has_exact_synonym
annotated target: N6-(1-oxohexadecyl)-L-lysine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N6-palmitoyl-L-lysine
annotated property: has_exact_synonym
annotated target: N6-hexadecanoylated L-lysine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: N6-palmitoyl-L-lysine
annotated property: has_exact_synonym
annotated target: N6-palmitoyl-L-lysine
has_synonym_type: Name from RESID

Axiom
annotated source: N6-palmitoyl-L-lysine
annotated property: has_exact_synonym
annotated target: N6-palmitoylated L-lysine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: N6-palmitoyl-L-lysine
annotated property: has_exact_synonym
annotated target: N6PamLys
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: N6-palmitoyl-L-lysine
annotated property: has_exact_synonym
annotated target: epsilon-palmitoyllysine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N6-palmitoyl-L-lysine
annotated property: has_exact_synonym
annotated target: palmitoylationk
has_synonym_type: Short label from OMSSA

Axiom
annotated source: N6-palmitoyl-L-lysine
annotated property: has_related_synonym
annotated target: Palmitoyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: N6-palmitoyl-L-lysine
annotated property: has_related_synonym
annotated target: Palmitoylation
has_synonym_type: Description (full_name) from Unimod

N6-myristoyl-L-lysine
type: Class
subclass of: N-myristoylated residue
subclass of: MOD_01875
definition: A protein modification that effectively converts an L-lysine residue to N6-myristoyl-L-lysine.
diff avg: 210.36
diff formula: C 14 H 26 N 0 O 1
diff mono: 210.19836
formula: C 20 H 38 N 2 O 2
mass avg: 338.54
mass mono: 338.29333
origin: K
source: natural
database_cross_reference: Unimod:45
database_cross_reference: uniprot.ptm:PTM-0196
has_exact_synonym: (2S)-2-amino-6-(tetradecanoylamino)hexanoic acid
has_exact_synonym: 2-amino-6-(tetradecanamido)hexanoic acid
has_exact_synonym: LIPID N6-myristoyl lysine
has_exact_synonym: N(zeta)-myristoyllysine
has_exact_synonym: N6-(1-oxotetradecyl)-L-lysine
has_exact_synonym: N6-(C14:0 aliphatic acyl)lysine
has_exact_synonym: N6-myristoyl-L-lysine
has_exact_synonym: N6-myristoylated L-lysine
has_exact_synonym: N6MyrLys
has_exact_synonym: epsilon-myristoyllysine
has_exact_synonym: myristoylationk
has_obo_namespace: PSI-MOD
has_related_synonym: Myristoyl
has_related_synonym: Myristoylation
id: MOD:00087
in_subset: PSI-MOD-slim

Axiom
annotated source: N6-myristoyl-L-lysine
annotated property: definition
annotated target: A protein modification that effectively converts an L-lysine residue to N6-myristoyl-L-lysine.
database_cross_reference: OMSSA:81
database_cross_reference: PubMed:1402651
database_cross_reference: PubMed:8346241
database_cross_reference: RESID:AA0078
database_cross_reference: Unimod:45#K

Axiom
annotated source: N6-myristoyl-L-lysine
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-6-(tetradecanoylamino)hexanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N6-myristoyl-L-lysine
annotated property: has_exact_synonym
annotated target: 2-amino-6-(tetradecanamido)hexanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N6-myristoyl-L-lysine
annotated property: has_exact_synonym
annotated target: LIPID N6-myristoyl lysine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N6-myristoyl-L-lysine
annotated property: has_exact_synonym
annotated target: N(zeta)-myristoyllysine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N6-myristoyl-L-lysine
annotated property: has_exact_synonym
annotated target: N6-(1-oxotetradecyl)-L-lysine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N6-myristoyl-L-lysine
annotated property: has_exact_synonym
annotated target: N6-(C14:0 aliphatic acyl)lysine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: N6-myristoyl-L-lysine
annotated property: has_exact_synonym
annotated target: N6-myristoyl-L-lysine
has_synonym_type: Name from RESID

Axiom
annotated source: N6-myristoyl-L-lysine
annotated property: has_exact_synonym
annotated target: N6-myristoylated L-lysine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: N6-myristoyl-L-lysine
annotated property: has_exact_synonym
annotated target: N6MyrLys
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: N6-myristoyl-L-lysine
annotated property: has_exact_synonym
annotated target: epsilon-myristoyllysine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N6-myristoyl-L-lysine
annotated property: has_exact_synonym
annotated target: myristoylationk
has_synonym_type: Short label from OMSSA

Axiom
annotated source: N6-myristoyl-L-lysine
annotated property: has_related_synonym
annotated target: Myristoyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: N6-myristoyl-L-lysine
annotated property: has_related_synonym
annotated target: Myristoylation
has_synonym_type: Description (full_name) from Unimod

O-palmitoyl-L-threonine
type: Class
subclass of: O-palmitoylated residue
subclass of: MOD_02004
definition: A protein modification that effectively converts an L-threonine residue to O-palmitoyl-L-threonine.
diff avg: 238.41
diff formula: C 16 H 30 N 0 O 1
diff mono: 238.22966
formula: C 20 H 37 N 1 O 3
mass avg: 339.52
mass mono: 339.27734
origin: T
source: natural
database_cross_reference: Unimod:47
database_cross_reference: uniprot.ptm:PTM-0242
has_exact_synonym: (2S,3R)-2-amino-3-(hexadecanoyloxy)butanoic acid
has_exact_synonym: L-threonine hexadecanoate ester
has_exact_synonym: LIPID O-palmitoyl threonine
has_exact_synonym: O-hexadecanoylated L-threonine
has_exact_synonym: O-palmitoyl-L-threonine
has_exact_synonym: O-palmitoylated L-threonine
has_exact_synonym: O3-palmitoyl-threonine
has_exact_synonym: OPamThr
has_exact_synonym: palmitoylationt
has_exact_synonym: threonine palmitate ester
has_obo_namespace: PSI-MOD
has_related_synonym: Palmitoyl
has_related_synonym: Palmitoylation
id: MOD:00088
in_subset: PSI-MOD-slim

Axiom
annotated source: O-palmitoyl-L-threonine
annotated property: definition
annotated target: A protein modification that effectively converts an L-threonine residue to O-palmitoyl-L-threonine.
database_cross_reference: OMSSA:95
database_cross_reference: PubMed:6642431
database_cross_reference: PubMed:8413602
database_cross_reference: RESID:AA0079
database_cross_reference: Unimod:47#T

Axiom
annotated source: O-palmitoyl-L-threonine
annotated property: has_exact_synonym
annotated target: (2S,3R)-2-amino-3-(hexadecanoyloxy)butanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: O-palmitoyl-L-threonine
annotated property: has_exact_synonym
annotated target: L-threonine hexadecanoate ester
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-palmitoyl-L-threonine
annotated property: has_exact_synonym
annotated target: LIPID O-palmitoyl threonine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: O-palmitoyl-L-threonine
annotated property: has_exact_synonym
annotated target: O-hexadecanoylated L-threonine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: O-palmitoyl-L-threonine
annotated property: has_exact_synonym
annotated target: O-palmitoyl-L-threonine
has_synonym_type: Name from RESID

Axiom
annotated source: O-palmitoyl-L-threonine
annotated property: has_exact_synonym
annotated target: O-palmitoylated L-threonine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: O-palmitoyl-L-threonine
annotated property: has_exact_synonym
annotated target: O3-palmitoyl-threonine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-palmitoyl-L-threonine
annotated property: has_exact_synonym
annotated target: OPamThr
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: O-palmitoyl-L-threonine
annotated property: has_exact_synonym
annotated target: palmitoylationt
has_synonym_type: Short label from OMSSA

Axiom
annotated source: O-palmitoyl-L-threonine
annotated property: has_exact_synonym
annotated target: threonine palmitate ester
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-palmitoyl-L-threonine
annotated property: has_related_synonym
annotated target: Palmitoyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: O-palmitoyl-L-threonine
annotated property: has_related_synonym
annotated target: Palmitoylation
has_synonym_type: Description (full_name) from Unimod

O-palmitoyl-L-serine
type: Class
subclass of: O-palmitoylated residue
subclass of: MOD_02003
definition: A protein modification that effectively converts an L-serine residue to O-palmitoyl-L-serine.
diff avg: 238.41
diff formula: C 16 H 30 N 0 O 1
diff mono: 238.22966
formula: C 19 H 35 N 1 O 3
mass avg: 325.49
mass mono: 325.2617
origin: S
source: natural
database_cross_reference: Unimod:47
database_cross_reference: uniprot.ptm:PTM-0241
has_exact_synonym: (2S)-2-amino-3-(hexadecanoyloxy)propanoic acid
has_exact_synonym: ACT_SITE O-palmitoyl serine intermediate
has_exact_synonym: L-serine hexadecanoate ester
has_exact_synonym: LIPID O-palmitoyl serine
has_exact_synonym: O-hexadecanoylated L-serine
has_exact_synonym: O-palmitoyl-L-serine
has_exact_synonym: O-palmitoylated L-serine
has_exact_synonym: O3-palmitoyl-serine
has_exact_synonym: OPamSer
has_exact_synonym: palmitoylations
has_exact_synonym: serine palmitate ester
has_obo_namespace: PSI-MOD
has_related_synonym: Palmitoyl
has_related_synonym: Palmitoylation
id: MOD:00089
in_subset: PSI-MOD-slim

Axiom
annotated source: O-palmitoyl-L-serine
annotated property: definition
annotated target: A protein modification that effectively converts an L-serine residue to O-palmitoyl-L-serine.
database_cross_reference: OMSSA:94
database_cross_reference: PubMed:3467339
database_cross_reference: RESID:AA0080
database_cross_reference: Unimod:47#S

Axiom
annotated source: O-palmitoyl-L-serine
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-3-(hexadecanoyloxy)propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: O-palmitoyl-L-serine
annotated property: has_exact_synonym
annotated target: ACT_SITE O-palmitoyl serine intermediate
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: O-palmitoyl-L-serine
annotated property: has_exact_synonym
annotated target: L-serine hexadecanoate ester
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-palmitoyl-L-serine
annotated property: has_exact_synonym
annotated target: LIPID O-palmitoyl serine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: O-palmitoyl-L-serine
annotated property: has_exact_synonym
annotated target: O-hexadecanoylated L-serine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: O-palmitoyl-L-serine
annotated property: has_exact_synonym
annotated target: O-palmitoyl-L-serine
has_synonym_type: Name from RESID

Axiom
annotated source: O-palmitoyl-L-serine
annotated property: has_exact_synonym
annotated target: O-palmitoylated L-serine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: O-palmitoyl-L-serine
annotated property: has_exact_synonym
annotated target: O3-palmitoyl-serine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-palmitoyl-L-serine
annotated property: has_exact_synonym
annotated target: OPamSer
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: O-palmitoyl-L-serine
annotated property: has_exact_synonym
annotated target: palmitoylations
has_synonym_type: Short label from OMSSA

Axiom
annotated source: O-palmitoyl-L-serine
annotated property: has_exact_synonym
annotated target: serine palmitate ester
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-palmitoyl-L-serine
annotated property: has_related_synonym
annotated target: Palmitoyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: O-palmitoyl-L-serine
annotated property: has_related_synonym
annotated target: Palmitoylation
has_synonym_type: Description (full_name) from Unimod

L-alanine amide
type: Class
subclass of: MOD_00883
subclass of: MOD_00901
definition: A protein modification that effectively converts an L-alanine residue to L-alanine amide.
diff avg: -0.98
diff formula: C 0 H 1 N 1 O -1
diff mono: -0.984016
formula: C 3 H 7 N 2 O 1
mass avg: 87.1
mass mono: 87.05584
origin: A
source: natural
term spec: C-term
database_cross_reference: uniprot.ptm:PTM-0057
has_exact_synonym: (2S)-2-aminopropanamide
has_exact_synonym: AlaN
has_exact_synonym: L-alanine amide
has_exact_synonym: MOD_RES Alanine amide
has_exact_synonym: alaninamide
has_exact_synonym: amidated L-alanine
has_obo_namespace: PSI-MOD
id: MOD:00090
in_subset: PSI-MOD-slim

Axiom
annotated source: L-alanine amide
annotated property: definition
annotated target: A protein modification that effectively converts an L-alanine residue to L-alanine amide.
database_cross_reference: PubMed:1377792
database_cross_reference: PubMed:2069951
database_cross_reference: PubMed:8472537
database_cross_reference: PubMed:952951
database_cross_reference: RESID:AA0081

Axiom
annotated source: L-alanine amide
annotated property: has_exact_synonym
annotated target: (2S)-2-aminopropanamide
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-alanine amide
annotated property: has_exact_synonym
annotated target: AlaN
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-alanine amide
annotated property: has_exact_synonym
annotated target: L-alanine amide
has_synonym_type: Name from RESID

Axiom
annotated source: L-alanine amide
annotated property: has_exact_synonym
annotated target: MOD_RES Alanine amide
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-alanine amide
annotated property: has_exact_synonym
annotated target: alaninamide
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-alanine amide
annotated property: has_exact_synonym
annotated target: amidated L-alanine
has_synonym_type: Alternate name curated by PSI-MOD

L-arginine amide
type: Class
subclass of: MOD_00883
subclass of: MOD_00902
definition: A protein modification that effectively converts an L-arginine residue to L-arginine amide.
diff avg: -0.98
diff formula: C 0 H 1 N 1 O -1
diff mono: -0.984016
formula: C 6 H 14 N 5 O 1
mass avg: 172.21
mass mono: 172.11984
origin: R
source: natural
term spec: C-term
database_cross_reference: uniprot.ptm:PTM-0060
has_exact_synonym: (2S)-2-amino-5-[(diaminomethylidene)amino]pentanamide
has_exact_synonym: 2-amino-5-carbamimidamidopentanamide
has_exact_synonym: 2-amino-5-guanidinopentanamide
has_exact_synonym: ArgN
has_exact_synonym: L-arginine amide
has_exact_synonym: MOD_RES Arginine amide
has_exact_synonym: amidated L-arginine
has_exact_synonym: argininamide
has_obo_namespace: PSI-MOD
id: MOD:00091
in_subset: PSI-MOD-slim

Axiom
annotated source: L-arginine amide
annotated property: definition
annotated target: A protein modification that effectively converts an L-arginine residue to L-arginine amide.
database_cross_reference: ChEBI:145897
database_cross_reference: PubMed:2229025
database_cross_reference: PubMed:2753890
database_cross_reference: PubMed:743209
database_cross_reference: RESID:AA0082

Axiom
annotated source: L-arginine amide
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-5-[(diaminomethylidene)amino]pentanamide
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-arginine amide
annotated property: has_exact_synonym
annotated target: 2-amino-5-carbamimidamidopentanamide
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-arginine amide
annotated property: has_exact_synonym
annotated target: 2-amino-5-guanidinopentanamide
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-arginine amide
annotated property: has_exact_synonym
annotated target: ArgN
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-arginine amide
annotated property: has_exact_synonym
annotated target: L-arginine amide
has_synonym_type: Name from RESID

Axiom
annotated source: L-arginine amide
annotated property: has_exact_synonym
annotated target: MOD_RES Arginine amide
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-arginine amide
annotated property: has_exact_synonym
annotated target: amidated L-arginine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: L-arginine amide
annotated property: has_exact_synonym
annotated target: argininamide
has_synonym_type: Alternate name from RESID

L-asparagine amide
type: Class
subclass of: MOD_00883
subclass of: MOD_00903
definition: A protein modification that effectively converts an L-asparagine residue to L-asparagine amide.
diff avg: -0.98
diff formula: C 0 H 1 N 1 O -1
diff mono: -0.984016
formula: C 4 H 8 N 3 O 2
mass avg: 130.13
mass mono: 130.06165
origin: N
source: natural
term spec: C-term
database_cross_reference: uniprot.ptm:PTM-0062
has_exact_synonym: (2S)-2-aminobutanediamide
has_exact_synonym: AsnN
has_exact_synonym: L-asparagine amide
has_exact_synonym: MOD_RES Asparagine amide
has_exact_synonym: amidated L-asparagine
has_exact_synonym: asparaginamide
has_obo_namespace: PSI-MOD
id: MOD:00092
in_subset: PSI-MOD-slim

Axiom
annotated source: L-asparagine amide
annotated property: definition
annotated target: A protein modification that effectively converts an L-asparagine residue to L-asparagine amide.
database_cross_reference: ChEBI:145898
database_cross_reference: PubMed:2753132
database_cross_reference: PubMed:279902
database_cross_reference: PubMed:3415690
database_cross_reference: RESID:AA0083

Axiom
annotated source: L-asparagine amide
annotated property: has_exact_synonym
annotated target: (2S)-2-aminobutanediamide
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-asparagine amide
annotated property: has_exact_synonym
annotated target: AsnN
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-asparagine amide
annotated property: has_exact_synonym
annotated target: L-asparagine amide
has_synonym_type: Name from RESID

Axiom
annotated source: L-asparagine amide
annotated property: has_exact_synonym
annotated target: MOD_RES Asparagine amide
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-asparagine amide
annotated property: has_exact_synonym
annotated target: amidated L-asparagine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: L-asparagine amide
annotated property: has_exact_synonym
annotated target: asparaginamide
has_synonym_type: Alternate name from RESID

L-aspartic acid 1-amide
type: Class
subclass of: MOD_00883
subclass of: MOD_00904
definition: A protein modification that effectively converts an L-aspartic acid residue to L-aspartic acid 1-amide.
diff avg: -0.98
diff formula: C 0 H 1 N 1 O -1
diff mono: -0.984016
formula: C 4 H 7 N 2 O 3
mass avg: 131.11
mass mono: 131.04567
origin: D
source: natural
term spec: C-term
database_cross_reference: uniprot.ptm:PTM-0063
has_exact_synonym: (2S)-2-amino-1-butanediamic acid
has_exact_synonym: 1-amidated L-aspartic acid
has_exact_synonym: 3,4-diamino-4-oxobutanoic acid
has_exact_synonym: 3-amino-succinamic acid
has_exact_synonym: AspN
has_exact_synonym: L-aspartic acid 1-amide
has_exact_synonym: MOD_RES Aspartic acid 1-amide
has_exact_synonym: alpha-asparagine
has_exact_synonym: isoasparagine
has_obo_namespace: PSI-MOD
id: MOD:00093
in_subset: PSI-MOD-slim

Axiom
annotated source: L-aspartic acid 1-amide
annotated property: definition
annotated target: A protein modification that effectively converts an L-aspartic acid residue to L-aspartic acid 1-amide.
database_cross_reference: PubMed:2542051
database_cross_reference: RESID:AA0084

Axiom
annotated source: L-aspartic acid 1-amide
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-1-butanediamic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-aspartic acid 1-amide
annotated property: has_exact_synonym
annotated target: 1-amidated L-aspartic acid
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: L-aspartic acid 1-amide
annotated property: has_exact_synonym
annotated target: 3,4-diamino-4-oxobutanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-aspartic acid 1-amide
annotated property: has_exact_synonym
annotated target: 3-amino-succinamic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-aspartic acid 1-amide
annotated property: has_exact_synonym
annotated target: AspN
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-aspartic acid 1-amide
annotated property: has_exact_synonym
annotated target: L-aspartic acid 1-amide
has_synonym_type: Name from RESID

Axiom
annotated source: L-aspartic acid 1-amide
annotated property: has_exact_synonym
annotated target: MOD_RES Aspartic acid 1-amide
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-aspartic acid 1-amide
annotated property: has_exact_synonym
annotated target: alpha-asparagine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-aspartic acid 1-amide
annotated property: has_exact_synonym
annotated target: isoasparagine
has_synonym_type: Alternate name from RESID

L-cysteine amide
type: Class
subclass of: MOD_00883
subclass of: MOD_00905
definition: A protein modification that effectively converts an L-cysteine residue to L-cysteine amide.
diff avg: -0.98
diff formula: C 0 H 1 N 1 O -1 S 0
diff mono: -0.984016
formula: C 3 H 7 N 2 O 1 S 1
mass avg: 119.16
mass mono: 119.02791
origin: C
source: natural
term spec: C-term
database_cross_reference: uniprot.ptm:PTM-0102
has_exact_synonym: (2R)-2-amino-3-sulfanylpropanamide
has_exact_synonym: 2-amino-3-mercaptopropanamide
has_exact_synonym: CysN
has_exact_synonym: L-cysteine amide
has_exact_synonym: MOD_RES Cysteine amide
has_exact_synonym: amidated L-cysteine
has_exact_synonym: cysteinamide
has_obo_namespace: PSI-MOD
id: MOD:00094
in_subset: PSI-MOD-slim

Axiom
annotated source: L-cysteine amide
annotated property: definition
annotated target: A protein modification that effectively converts an L-cysteine residue to L-cysteine amide.
database_cross_reference: PubMed:1892838
database_cross_reference: PubMed:7149738
database_cross_reference: RESID:AA0085

Axiom
annotated source: L-cysteine amide
annotated property: has_exact_synonym
annotated target: (2R)-2-amino-3-sulfanylpropanamide
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-cysteine amide
annotated property: has_exact_synonym
annotated target: 2-amino-3-mercaptopropanamide
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteine amide
annotated property: has_exact_synonym
annotated target: CysN
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-cysteine amide
annotated property: has_exact_synonym
annotated target: L-cysteine amide
has_synonym_type: Name from RESID

Axiom
annotated source: L-cysteine amide
annotated property: has_exact_synonym
annotated target: MOD_RES Cysteine amide
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-cysteine amide
annotated property: has_exact_synonym
annotated target: amidated L-cysteine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: L-cysteine amide
annotated property: has_exact_synonym
annotated target: cysteinamide
has_synonym_type: Alternate name from RESID

L-glutamine amide
type: Class
subclass of: MOD_00883
subclass of: MOD_00907
definition: A protein modification that effectively converts an L-glutamine residue to L-glutamine amide.
diff avg: -0.98
diff formula: C 0 H 1 N 1 O -1
diff mono: -0.984016
formula: C 5 H 10 N 3 O 2
mass avg: 144.15
mass mono: 144.0773
origin: Q
source: natural
term spec: C-term
database_cross_reference: uniprot.ptm:PTM-0130
has_exact_synonym: (2S)-2-aminopentanediamide
has_exact_synonym: GlnN
has_exact_synonym: L-glutamine amide
has_exact_synonym: MOD_RES Glutamine amide
has_exact_synonym: amidated L-glutamine
has_exact_synonym: glutaminamide
has_obo_namespace: PSI-MOD
id: MOD:00095
in_subset: PSI-MOD-slim

Axiom
annotated source: L-glutamine amide
annotated property: definition
annotated target: A protein modification that effectively converts an L-glutamine residue to L-glutamine amide.
database_cross_reference: PubMed:7673220
database_cross_reference: PubMed:9048550
database_cross_reference: RESID:AA0086

Axiom
annotated source: L-glutamine amide
annotated property: has_exact_synonym
annotated target: (2S)-2-aminopentanediamide
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-glutamine amide
annotated property: has_exact_synonym
annotated target: GlnN
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-glutamine amide
annotated property: has_exact_synonym
annotated target: L-glutamine amide
has_synonym_type: Name from RESID

Axiom
annotated source: L-glutamine amide
annotated property: has_exact_synonym
annotated target: MOD_RES Glutamine amide
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-glutamine amide
annotated property: has_exact_synonym
annotated target: amidated L-glutamine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: L-glutamine amide
annotated property: has_exact_synonym
annotated target: glutaminamide
has_synonym_type: Alternate name from RESID

L-glutamic acid 1-amide
type: Class
subclass of: MOD_00883
subclass of: MOD_00906
definition: A protein modification that effectively converts an L-glutamic acid residue to L-glutamic acid 1-amide.
diff avg: -0.98
diff formula: C 0 H 1 N 1 O -1
diff mono: -0.984016
formula: C 5 H 9 N 2 O 3
mass avg: 145.14
mass mono: 145.06131
origin: E
source: natural
term spec: C-term
database_cross_reference: uniprot.ptm:PTM-0129
has_exact_synonym: (2S)-2-amino-1-pentanediamic acid
has_exact_synonym: 1-amidated L-glutamic acid
has_exact_synonym: 4,5-diamino-5-oxopentanoic acid
has_exact_synonym: GluN
has_exact_synonym: L-glutamic acid 1-amide
has_exact_synonym: MOD_RES Glutamic acid 1-amide
has_exact_synonym: isoglutamine
has_obo_namespace: PSI-MOD
id: MOD:00096
in_subset: PSI-MOD-slim

Axiom
annotated source: L-glutamic acid 1-amide
annotated property: definition
annotated target: A protein modification that effectively converts an L-glutamic acid residue to L-glutamic acid 1-amide.
database_cross_reference: PubMed:1093875
database_cross_reference: PubMed:14550575
database_cross_reference: RESID:AA0087

Axiom
annotated source: L-glutamic acid 1-amide
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-1-pentanediamic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-glutamic acid 1-amide
annotated property: has_exact_synonym
annotated target: 1-amidated L-glutamic acid
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: L-glutamic acid 1-amide
annotated property: has_exact_synonym
annotated target: 4,5-diamino-5-oxopentanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-glutamic acid 1-amide
annotated property: has_exact_synonym
annotated target: GluN
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-glutamic acid 1-amide
annotated property: has_exact_synonym
annotated target: L-glutamic acid 1-amide
has_synonym_type: Name from RESID

Axiom
annotated source: L-glutamic acid 1-amide
annotated property: has_exact_synonym
annotated target: MOD_RES Glutamic acid 1-amide
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-glutamic acid 1-amide
annotated property: has_exact_synonym
annotated target: isoglutamine
has_synonym_type: Alternate name from RESID

glycine amide
type: Class
subclass of: MOD_00883
subclass of: MOD_00908
definition: A protein modification that effectively converts a glycine residue to glycine amide.
diff avg: -0.98
diff formula: C 0 H 1 N 1 O -1
diff mono: -0.984016
formula: C 2 H 5 N 2 O 1
mass avg: 73.07
mass mono: 73.04019
origin: G
source: natural
term spec: C-term
database_cross_reference: uniprot.ptm:PTM-0132
has_exact_synonym: 2-aminoacetamide
has_exact_synonym: 2-aminoethanamide
has_exact_synonym: 2-azanylethanamide
has_exact_synonym: GlyN
has_exact_synonym: MOD_RES Glycine amide
has_exact_synonym: amidated glycine
has_exact_synonym: glycinamide
has_exact_synonym: glycine amide
has_obo_namespace: PSI-MOD
id: MOD:00097
in_subset: PSI-MOD-slim

Axiom
annotated source: glycine amide
annotated property: definition
annotated target: A protein modification that effectively converts a glycine residue to glycine amide.
database_cross_reference: PubMed:13591312
database_cross_reference: RESID:AA0088

Axiom
annotated source: glycine amide
annotated property: has_exact_synonym
annotated target: 2-aminoacetamide
has_synonym_type: Alternate name from RESID

Axiom
annotated source: glycine amide
annotated property: has_exact_synonym
annotated target: 2-aminoethanamide
has_synonym_type: Systematic name from RESID

Axiom
annotated source: glycine amide
annotated property: has_exact_synonym
annotated target: 2-azanylethanamide
has_synonym_type: Alternate name from RESID

Axiom
annotated source: glycine amide
annotated property: has_exact_synonym
annotated target: GlyN
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: glycine amide
annotated property: has_exact_synonym
annotated target: MOD_RES Glycine amide
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: glycine amide
annotated property: has_exact_synonym
annotated target: amidated glycine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: glycine amide
annotated property: has_exact_synonym
annotated target: glycinamide
has_synonym_type: Alternate name from RESID

Axiom
annotated source: glycine amide
annotated property: has_exact_synonym
annotated target: glycine amide
has_synonym_type: Name from RESID

L-histidine amide
type: Class
subclass of: MOD_00883
subclass of: MOD_00909
definition: A protein modification that effectively converts an L-histidine residue to L-histidine amide.
diff avg: -0.98
diff formula: C 0 H 1 N 1 O -1
diff mono: -0.984016
formula: C 6 H 9 N 4 O 1
mass avg: 153.16
mass mono: 153.07764
origin: H
source: natural
term spec: C-term
database_cross_reference: uniprot.ptm:PTM-0148
has_exact_synonym: (2S)-2-amino-3-(1H-imidazol-4-yl)propanamide
has_exact_synonym: HisN
has_exact_synonym: L-histidine amide
has_exact_synonym: MOD_RES Histidine amide
has_exact_synonym: amidated L-histidine
has_exact_synonym: histidinamide
has_obo_namespace: PSI-MOD
id: MOD:00098
in_subset: PSI-MOD-slim

Axiom
annotated source: L-histidine amide
annotated property: definition
annotated target: A protein modification that effectively converts an L-histidine residue to L-histidine amide.
database_cross_reference: PubMed:2153586
database_cross_reference: PubMed:2307683
database_cross_reference: PubMed:2839478
database_cross_reference: RESID:AA0089

Axiom
annotated source: L-histidine amide
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-3-(1H-imidazol-4-yl)propanamide
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-histidine amide
annotated property: has_exact_synonym
annotated target: HisN
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-histidine amide
annotated property: has_exact_synonym
annotated target: L-histidine amide
has_synonym_type: Name from RESID

Axiom
annotated source: L-histidine amide
annotated property: has_exact_synonym
annotated target: MOD_RES Histidine amide
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-histidine amide
annotated property: has_exact_synonym
annotated target: amidated L-histidine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: L-histidine amide
annotated property: has_exact_synonym
annotated target: histidinamide
has_synonym_type: Alternate name from RESID

L-isoleucine amide
type: Class
subclass of: MOD_00883
subclass of: MOD_00910
definition: A protein modification that effectively converts an L-isoleucine residue to L-isoleucine amide.
diff avg: -0.98
diff formula: C 0 H 1 N 1 O -1
diff mono: -0.984016
formula: C 6 H 13 N 2 O 1
mass avg: 129.18
mass mono: 129.10278
origin: I
source: natural
term spec: C-term
database_cross_reference: uniprot.ptm:PTM-0161
has_exact_synonym: (2S,3S)-2-amino-3-methylpentanamide
has_exact_synonym: IleN
has_exact_synonym: L-isoleucine amide
has_exact_synonym: MOD_RES Isoleucine amide
has_exact_synonym: amidated L-isoleucine
has_exact_synonym: isoleucinamide
has_obo_namespace: PSI-MOD
id: MOD:00099
in_subset: PSI-MOD-slim

Axiom
annotated source: L-isoleucine amide
annotated property: definition
annotated target: A protein modification that effectively converts an L-isoleucine residue to L-isoleucine amide.
database_cross_reference: RESID:AA0090

Axiom
annotated source: L-isoleucine amide
annotated property: has_exact_synonym
annotated target: (2S,3S)-2-amino-3-methylpentanamide
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-isoleucine amide
annotated property: has_exact_synonym
annotated target: IleN
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-isoleucine amide
annotated property: has_exact_synonym
annotated target: L-isoleucine amide
has_synonym_type: Name from RESID

Axiom
annotated source: L-isoleucine amide
annotated property: has_exact_synonym
annotated target: MOD_RES Isoleucine amide
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-isoleucine amide
annotated property: has_exact_synonym
annotated target: amidated L-isoleucine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: L-isoleucine amide
annotated property: has_exact_synonym
annotated target: isoleucinamide
has_synonym_type: Alternate name from RESID

L-leucine amide
type: Class
subclass of: MOD_00883
subclass of: MOD_00911
definition: A protein modification that effectively converts an L-leucine residue to L-leucine amide.
diff avg: -0.98
diff formula: C 0 H 1 N 1 O -1
diff mono: -0.984016
formula: C 6 H 13 N 2 O 1
mass avg: 129.18
mass mono: 129.10278
origin: L
source: natural
term spec: C-term
database_cross_reference: uniprot.ptm:PTM-0166
has_exact_synonym: (2S)-2-amino-4-methylpentanamide
has_exact_synonym: 2-amino-4-methylvaleramide
has_exact_synonym: 2-azanyl-4-methylpentanamide
has_exact_synonym: L-leucine amide
has_exact_synonym: LeuN
has_exact_synonym: MOD_RES Leucine amide
has_exact_synonym: alpha-aminoisocaproamide
has_exact_synonym: amidated L-leucine
has_exact_synonym: leucinamide
has_obo_namespace: PSI-MOD
id: MOD:00100
in_subset: PSI-MOD-slim

Axiom
annotated source: L-leucine amide
annotated property: definition
annotated target: A protein modification that effectively converts an L-leucine residue to L-leucine amide.
database_cross_reference: PubMed:2578459
database_cross_reference: RESID:AA0091

Axiom
annotated source: L-leucine amide
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-4-methylpentanamide
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-leucine amide
annotated property: has_exact_synonym
annotated target: 2-amino-4-methylvaleramide
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-leucine amide
annotated property: has_exact_synonym
annotated target: 2-azanyl-4-methylpentanamide
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-leucine amide
annotated property: has_exact_synonym
annotated target: L-leucine amide
has_synonym_type: Name from RESID

Axiom
annotated source: L-leucine amide
annotated property: has_exact_synonym
annotated target: LeuN
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-leucine amide
annotated property: has_exact_synonym
annotated target: MOD_RES Leucine amide
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-leucine amide
annotated property: has_exact_synonym
annotated target: alpha-aminoisocaproamide
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-leucine amide
annotated property: has_exact_synonym
annotated target: amidated L-leucine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: L-leucine amide
annotated property: has_exact_synonym
annotated target: leucinamide
has_synonym_type: Alternate name from RESID

L-lysine amide
type: Class
subclass of: MOD_00883
subclass of: MOD_00912
definition: A protein modification that effectively converts an L-lysine residue to L-lysine amide.
diff avg: -0.98
diff formula: C 0 H 1 N 1 O -1
diff mono: -0.984016
formula: C 6 H 14 N 3 O 1
mass avg: 144.2
mass mono: 144.1137
origin: K
source: natural
term spec: C-term
database_cross_reference: uniprot.ptm:PTM-0168
has_exact_synonym: (2S)-2,6-diaminohexanamide
has_exact_synonym: L-lysine amide
has_exact_synonym: LysN
has_exact_synonym: MOD_RES Lysine amide
has_exact_synonym: amidated L-lysine
has_exact_synonym: lysinamide
has_obo_namespace: PSI-MOD
id: MOD:00101
in_subset: PSI-MOD-slim

Axiom
annotated source: L-lysine amide
annotated property: definition
annotated target: A protein modification that effectively converts an L-lysine residue to L-lysine amide.
database_cross_reference: PubMed:6579533
database_cross_reference: RESID:AA0092

Axiom
annotated source: L-lysine amide
annotated property: has_exact_synonym
annotated target: (2S)-2,6-diaminohexanamide
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-lysine amide
annotated property: has_exact_synonym
annotated target: L-lysine amide
has_synonym_type: Name from RESID

Axiom
annotated source: L-lysine amide
annotated property: has_exact_synonym
annotated target: LysN
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-lysine amide
annotated property: has_exact_synonym
annotated target: MOD_RES Lysine amide
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-lysine amide
annotated property: has_exact_synonym
annotated target: amidated L-lysine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: L-lysine amide
annotated property: has_exact_synonym
annotated target: lysinamide
has_synonym_type: Alternate name from RESID

L-methionine amide
type: Class
subclass of: MOD_00883
subclass of: MOD_00913
definition: A protein modification that effectively converts an L-methionine residue to L-methionine amide.
diff avg: -0.98
diff formula: C 0 H 1 N 1 O -1 S 0
diff mono: -0.984016
formula: C 5 H 11 N 2 O 1 S 1
mass avg: 147.22
mass mono: 147.0592
origin: M
source: natural
term spec: C-term
database_cross_reference: uniprot.ptm:PTM-0164
has_exact_synonym: (2S)-2-amino-4-(methylsulfanyl)butanamide
has_exact_synonym: 2-amino-4-(methylthio)butanamide
has_exact_synonym: L-methionine amide
has_exact_synonym: MOD_RES Methionine amide
has_exact_synonym: MetN
has_exact_synonym: amidated L-methionine
has_exact_synonym: methioninamide
has_obo_namespace: PSI-MOD
id: MOD:00102
in_subset: PSI-MOD-slim

Axiom
annotated source: L-methionine amide
annotated property: has_exact_synonym
annotated target: methioninamide
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-methionine amide
annotated property: definition
annotated target: A protein modification that effectively converts an L-methionine residue to L-methionine amide.
database_cross_reference: PubMed:4375977
database_cross_reference: RESID:AA0093

Axiom
annotated source: L-methionine amide
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-4-(methylsulfanyl)butanamide
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-methionine amide
annotated property: has_exact_synonym
annotated target: 2-amino-4-(methylthio)butanamide
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-methionine amide
annotated property: has_exact_synonym
annotated target: L-methionine amide
has_synonym_type: Name from RESID

Axiom
annotated source: L-methionine amide
annotated property: has_exact_synonym
annotated target: MOD_RES Methionine amide
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-methionine amide
annotated property: has_exact_synonym
annotated target: MetN
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-methionine amide
annotated property: has_exact_synonym
annotated target: amidated L-methionine
has_synonym_type: Alternate name curated by PSI-MOD

L-phenylalanine amide
type: Class
subclass of: MOD_00883
subclass of: MOD_00914
definition: A protein modification that effectively converts an L-phenylalanine residue to L-phenylalanine amide.
diff avg: -0.98
diff formula: C 0 H 1 N 1 O -1
diff mono: -0.984016
formula: C 9 H 11 N 2 O 1
mass avg: 163.2
mass mono: 163.08714
origin: F
source: natural
term spec: C-term
database_cross_reference: uniprot.ptm:PTM-0248
has_exact_synonym: (2S)-2-amino-3-phenylpropanamide
has_exact_synonym: L-phenylalanine amide
has_exact_synonym: MOD_RES Phenylalanine amide
has_exact_synonym: PheN
has_exact_synonym: amidated L-phenylalanine
has_exact_synonym: phenylalaninamide
has_obo_namespace: PSI-MOD
id: MOD:00103
in_subset: PSI-MOD-slim

Axiom
annotated source: L-phenylalanine amide
annotated property: definition
annotated target: A protein modification that effectively converts an L-phenylalanine residue to L-phenylalanine amide.
database_cross_reference: PubMed:2905621
database_cross_reference: PubMed:8868490
database_cross_reference: RESID:AA0094

Axiom
annotated source: L-phenylalanine amide
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-3-phenylpropanamide
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-phenylalanine amide
annotated property: has_exact_synonym
annotated target: L-phenylalanine amide
has_synonym_type: Name from RESID

Axiom
annotated source: L-phenylalanine amide
annotated property: has_exact_synonym
annotated target: MOD_RES Phenylalanine amide
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-phenylalanine amide
annotated property: has_exact_synonym
annotated target: PheN
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-phenylalanine amide
annotated property: has_exact_synonym
annotated target: amidated L-phenylalanine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: L-phenylalanine amide
annotated property: has_exact_synonym
annotated target: phenylalaninamide
has_synonym_type: Alternate name from RESID

L-proline amide
type: Class
subclass of: MOD_00883
subclass of: MOD_00915
definition: A protein modification that effectively converts an L-proline residue to L-proline amide.
diff avg: -0.98
diff formula: C 0 H 1 N 1 O -1
diff mono: -0.984016
formula: C 5 H 9 N 2 O 1
mass avg: 113.14
mass mono: 113.07149
origin: P
source: natural
term spec: C-term
database_cross_reference: uniprot.ptm:PTM-0257
has_exact_synonym: (2S)-pyrrolidine-2-carboxamide
has_exact_synonym: L-proline amide
has_exact_synonym: MOD_RES Proline amide
has_exact_synonym: ProN
has_exact_synonym: amidated L-proline
has_exact_synonym: prolinamide
has_obo_namespace: PSI-MOD
id: MOD:00104
in_subset: PSI-MOD-slim

Axiom
annotated source: L-proline amide
annotated property: definition
annotated target: A protein modification that effectively converts an L-proline residue to L-proline amide.
database_cross_reference: PubMed:4982117
database_cross_reference: PubMed:5760861
database_cross_reference: RESID:AA0095

Axiom
annotated source: L-proline amide
annotated property: has_exact_synonym
annotated target: (2S)-pyrrolidine-2-carboxamide
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-proline amide
annotated property: has_exact_synonym
annotated target: L-proline amide
has_synonym_type: Name from RESID

Axiom
annotated source: L-proline amide
annotated property: has_exact_synonym
annotated target: MOD_RES Proline amide
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-proline amide
annotated property: has_exact_synonym
annotated target: ProN
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-proline amide
annotated property: has_exact_synonym
annotated target: amidated L-proline
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: L-proline amide
annotated property: has_exact_synonym
annotated target: prolinamide
has_synonym_type: Alternate name from RESID

L-serine amide
type: Class
subclass of: MOD_00883
subclass of: MOD_00916
definition: A protein modification that effectively converts an L-serine residue to L-serine amide.
diff avg: -0.98
diff formula: C 0 H 1 N 1 O -1
diff mono: -0.984016
formula: C 3 H 7 N 2 O 2
mass avg: 103.1
mass mono: 103.05075
origin: S
source: natural
term spec: C-term
database_cross_reference: uniprot.ptm:PTM-0275
has_exact_synonym: (2S)-2-amino-3-hydroxypropanamide
has_exact_synonym: L-serine amide
has_exact_synonym: MOD_RES Serine amide
has_exact_synonym: SerN
has_exact_synonym: amidated L-serine
has_exact_synonym: serinamide
has_obo_namespace: PSI-MOD
id: MOD:00105
in_subset: PSI-MOD-slim

Axiom
annotated source: L-serine amide
annotated property: definition
annotated target: A protein modification that effectively converts an L-serine residue to L-serine amide.
database_cross_reference: PubMed:743209
database_cross_reference: RESID:AA0096

Axiom
annotated source: L-serine amide
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-3-hydroxypropanamide
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-serine amide
annotated property: has_exact_synonym
annotated target: L-serine amide
has_synonym_type: Name from RESID

Axiom
annotated source: L-serine amide
annotated property: has_exact_synonym
annotated target: MOD_RES Serine amide
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-serine amide
annotated property: has_exact_synonym
annotated target: SerN
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-serine amide
annotated property: has_exact_synonym
annotated target: amidated L-serine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: L-serine amide
annotated property: has_exact_synonym
annotated target: serinamide
has_synonym_type: Alternate name from RESID

L-threonine amide
type: Class
subclass of: MOD_00883
subclass of: MOD_00917
definition: A protein modification that effectively converts an L-threonine residue to L-threonine amide.
diff avg: -0.98
diff formula: C 0 H 1 N 1 O -1
diff mono: -0.984016
formula: C 4 H 9 N 2 O 2
mass avg: 117.13
mass mono: 117.06641
origin: T
source: natural
term spec: C-term
database_cross_reference: uniprot.ptm:PTM-0293
has_exact_synonym: (2S,3R)-2-amino-3-hydroxybutanamide
has_exact_synonym: L-threonine amide
has_exact_synonym: MOD_RES Threonine amide
has_exact_synonym: ThrN
has_exact_synonym: amidated L-threonine
has_exact_synonym: threoninamide
has_obo_namespace: PSI-MOD
id: MOD:00106
in_subset: PSI-MOD-slim

Axiom
annotated source: L-threonine amide
annotated property: definition
annotated target: A protein modification that effectively converts an L-threonine residue to L-threonine amide.
database_cross_reference: PubMed:1390774
database_cross_reference: RESID:AA0097

Axiom
annotated source: L-threonine amide
annotated property: has_exact_synonym
annotated target: (2S,3R)-2-amino-3-hydroxybutanamide
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-threonine amide
annotated property: has_exact_synonym
annotated target: L-threonine amide
has_synonym_type: Name from RESID

Axiom
annotated source: L-threonine amide
annotated property: has_exact_synonym
annotated target: MOD_RES Threonine amide
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-threonine amide
annotated property: has_exact_synonym
annotated target: ThrN
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-threonine amide
annotated property: has_exact_synonym
annotated target: amidated L-threonine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: L-threonine amide
annotated property: has_exact_synonym
annotated target: threoninamide
has_synonym_type: Alternate name from RESID

L-tryptophan amide
type: Class
subclass of: MOD_00883
subclass of: MOD_00918
definition: A protein modification that effectively converts an L-tryptophan residue to L-tryptophan amide.
diff avg: -0.98
diff formula: C 0 H 1 N 1 O -1
diff mono: -0.984016
formula: C 11 H 12 N 3 O 1
mass avg: 202.24
mass mono: 202.09804
origin: W
source: natural
term spec: C-term
database_cross_reference: uniprot.ptm:PTM-0296
has_exact_synonym: (2S)-2-amino-3-(1H-indol-3-yl)propanamide
has_exact_synonym: L-tryptophan amide
has_exact_synonym: MOD_RES Tryptophan amide
has_exact_synonym: TrpN
has_exact_synonym: amidated L-tryptophan
has_exact_synonym: tryptophanamide
has_obo_namespace: PSI-MOD
id: MOD:00107
in_subset: PSI-MOD-slim

Axiom
annotated source: L-tryptophan amide
annotated property: definition
annotated target: A protein modification that effectively converts an L-tryptophan residue to L-tryptophan amide.
database_cross_reference: PubMed:3947348
database_cross_reference: RESID:AA0098

Axiom
annotated source: L-tryptophan amide
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-3-(1H-indol-3-yl)propanamide
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-tryptophan amide
annotated property: has_exact_synonym
annotated target: L-tryptophan amide
has_synonym_type: Name from RESID

Axiom
annotated source: L-tryptophan amide
annotated property: has_exact_synonym
annotated target: MOD_RES Tryptophan amide
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-tryptophan amide
annotated property: has_exact_synonym
annotated target: TrpN
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-tryptophan amide
annotated property: has_exact_synonym
annotated target: amidated L-tryptophan
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: L-tryptophan amide
annotated property: has_exact_synonym
annotated target: tryptophanamide
has_synonym_type: Alternate name from RESID

L-tyrosine amide
type: Class
subclass of: MOD_00883
subclass of: MOD_00919
definition: A protein modification that effectively converts an L-tyrosine residue to L-tyrosine amide.
diff avg: -0.98
diff formula: C 0 H 1 N 1 O -1
diff mono: -0.984016
formula: C 9 H 11 N 2 O 2
mass avg: 179.2
mass mono: 179.08205
origin: Y
source: natural
term spec: C-term
database_cross_reference: uniprot.ptm:PTM-0302
has_exact_synonym: (2S)-2-amino-3-(4-hydoxyphenyl)propanamide
has_exact_synonym: L-tyrosine amide
has_exact_synonym: MOD_RES Tyrosine amide
has_exact_synonym: TyrN
has_exact_synonym: amidated L-tyrosine
has_exact_synonym: tyrosinamide
has_obo_namespace: PSI-MOD
id: MOD:00108
in_subset: PSI-MOD-slim

Axiom
annotated source: L-tyrosine amide
annotated property: definition
annotated target: A protein modification that effectively converts an L-tyrosine residue to L-tyrosine amide.
database_cross_reference: PubMed:1377792
database_cross_reference: PubMed:3562898
database_cross_reference: PubMed:6509012
database_cross_reference: RESID:AA0099

Axiom
annotated source: L-tyrosine amide
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-3-(4-hydoxyphenyl)propanamide
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-tyrosine amide
annotated property: has_exact_synonym
annotated target: L-tyrosine amide
has_synonym_type: Name from RESID

Axiom
annotated source: L-tyrosine amide
annotated property: has_exact_synonym
annotated target: MOD_RES Tyrosine amide
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-tyrosine amide
annotated property: has_exact_synonym
annotated target: TyrN
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-tyrosine amide
annotated property: has_exact_synonym
annotated target: amidated L-tyrosine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: L-tyrosine amide
annotated property: has_exact_synonym
annotated target: tyrosinamide
has_synonym_type: Alternate name from RESID

L-valine amide
type: Class
subclass of: MOD_00883
subclass of: MOD_00920
definition: A protein modification that effectively converts an L-valine residue to L-valine amide.
diff avg: -0.98
diff formula: C 0 H 1 N 1 O -1
diff mono: -0.984016
formula: C 5 H 11 N 2 O 1
mass avg: 115.16
mass mono: 115.087135
origin: V
source: natural
term spec: C-term
database_cross_reference: uniprot.ptm:PTM-0303
has_exact_synonym: (2S)-2-amino-3-methylbutanamide
has_exact_synonym: L-valine amide
has_exact_synonym: MOD_RES Valine amide
has_exact_synonym: ValN
has_exact_synonym: valinamide
has_obo_namespace: PSI-MOD
id: MOD:00109
in_subset: PSI-MOD-slim

Axiom
annotated source: L-valine amide
annotated property: definition
annotated target: A protein modification that effectively converts an L-valine residue to L-valine amide.
database_cross_reference: PubMed:2578459
database_cross_reference: PubMed:5465996
database_cross_reference: RESID:AA0100

Axiom
annotated source: L-valine amide
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-3-methylbutanamide
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-valine amide
annotated property: has_exact_synonym
annotated target: L-valine amide
has_synonym_type: Name from RESID

Axiom
annotated source: L-valine amide
annotated property: has_exact_synonym
annotated target: MOD_RES Valine amide
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-valine amide
annotated property: has_exact_synonym
annotated target: ValN
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-valine amide
annotated property: has_exact_synonym
annotated target: valinamide
has_synonym_type: Alternate name from RESID

L-cysteine methyl disulfide
type: Class
subclass of: MOD_00848
subclass of: MOD_00905
subclass of: MOD_01153
subclass of: MOD_01862
definition: A protein modification that effectively converts an L-cysteine residue to L-cysteine methyl disulfide.
diff avg: 46.09
diff formula: C 1 H 2 N 0 O 0 S 1
diff mono: 45.98772
formula: C 4 H 7 N 1 O 1 S 2
mass avg: 149.23
mass mono: 148.9969
origin: C
source: natural
database_cross_reference: Unimod:39
database_cross_reference: uniprot.ptm:PTM-0104
has_exact_synonym: (2R)-2-amino-3-(methyldisulfanediyl)propanoic acid
has_exact_synonym: 2-amino-3-(methyldisulfanediyl)propanoic acid
has_exact_synonym: 2-amino-3-(methyldithio)propanoic acid
has_exact_synonym: 2-amino-3-methyldisulfanylpropanoic acid
has_exact_synonym: 2-azanyl-3-(methyldisulfanediyl)-propanoic acid
has_exact_synonym: L-3-(methyldithio)alanine
has_exact_synonym: L-cysteine methyl disulfide
has_exact_synonym: MOD_RES Cysteine methyl disulfide
has_exact_synonym: S-methylthio-L-cysteine
has_exact_synonym: S-methylthiocysteine
has_exact_synonym: methyl methanethiolsulfonate derivatized cysteine
has_exact_synonym: methyl methanethiosulfonate derivatized cysteine
has_exact_synonym: mmts
has_obo_namespace: PSI-MOD
has_related_synonym: Beta-methylthiolation
has_related_synonym: Methylthio
id: MOD:00110
comment: Produced artifactually by reaction of cysteine residues with methyl methanethiosulfonate (MMTS) [JSG], but also naturally in bacteria [PMT].

Axiom
annotated source: L-cysteine methyl disulfide
annotated property: definition
annotated target: A protein modification that effectively converts an L-cysteine residue to L-cysteine methyl disulfide.
database_cross_reference: OMSSA:179
database_cross_reference: PubMed:10555576
database_cross_reference: PubMed:163643
database_cross_reference: PubMed:2056535
database_cross_reference: PubMed:6381494
database_cross_reference: RESID:AA0101
database_cross_reference: Unimod:39#C

Axiom
annotated source: L-cysteine methyl disulfide
annotated property: has_exact_synonym
annotated target: (2R)-2-amino-3-(methyldisulfanediyl)propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-cysteine methyl disulfide
annotated property: has_exact_synonym
annotated target: 2-amino-3-(methyldisulfanediyl)propanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteine methyl disulfide
annotated property: has_exact_synonym
annotated target: 2-amino-3-(methyldithio)propanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteine methyl disulfide
annotated property: has_exact_synonym
annotated target: 2-amino-3-methyldisulfanylpropanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteine methyl disulfide
annotated property: has_exact_synonym
annotated target: 2-azanyl-3-(methyldisulfanediyl)-propanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteine methyl disulfide
annotated property: has_exact_synonym
annotated target: L-3-(methyldithio)alanine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteine methyl disulfide
annotated property: has_exact_synonym
annotated target: L-cysteine methyl disulfide
has_synonym_type: Name from RESID

Axiom
annotated source: L-cysteine methyl disulfide
annotated property: has_exact_synonym
annotated target: MOD_RES Cysteine methyl disulfide
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-cysteine methyl disulfide
annotated property: has_exact_synonym
annotated target: S-methylthio-L-cysteine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteine methyl disulfide
annotated property: has_exact_synonym
annotated target: S-methylthiocysteine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteine methyl disulfide
annotated property: has_exact_synonym
annotated target: methyl methanethiolsulfonate derivatized cysteine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: L-cysteine methyl disulfide
annotated property: has_exact_synonym
annotated target: methyl methanethiosulfonate derivatized cysteine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: L-cysteine methyl disulfide
annotated property: has_exact_synonym
annotated target: mmts
has_synonym_type: Short label from OMSSA

Axiom
annotated source: L-cysteine methyl disulfide
annotated property: has_related_synonym
annotated target: Beta-methylthiolation
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: L-cysteine methyl disulfide
annotated property: has_related_synonym
annotated target: Methylthio
has_synonym_type: Agreed label from MS community

Axiom
annotated source: L-cysteine methyl disulfide
annotated property: has_related_synonym
annotated target: Methylthio
has_synonym_type: Interim label from Unimod

S-farnesyl-L-cysteine
type: Class
subclass of: farnesylated residue
subclass of: MOD_01110
definition: A protein modification that effectively converts an L-cysteine residue to S-farnesyl-L-cysteine.
diff avg: 204.36
diff formula: C 15 H 24 N 0 O 0 S 0
diff mono: 204.1878
formula: C 18 H 29 N 1 O 1 S 1
mass avg: 307.5
mass mono: 307.197
origin: C
source: natural
database_cross_reference: Unimod:44
database_cross_reference: uniprot.ptm:PTM-0277
has_exact_synonym: (2R)-2-amino-3-([(2E,6E)-3,7,11-trimethyldodeca-2,6,10-trien-1-yl]sulfanyl)propanoic acid
has_exact_synonym: 2-amino-3-(3,7,11-trimethyl-2,6,10-dodecatrienylthio)propanoic acid
has_exact_synonym: LIPID S-farnesyl cysteine
has_exact_synonym: S-farnesyl Cystenyl
has_exact_synonym: S-farnesyl-L-cysteine
has_exact_synonym: SFarnCys
has_exact_synonym: farnesylationc
has_obo_namespace: PSI-MOD
has_related_synonym: Farnesyl
has_related_synonym: Farnesylation
id: MOD:00111
in_subset: PSI-MOD-slim
comment: From DeltaMass: (name misspelled "S-farnesyl cystenyl")

Axiom
annotated source: S-farnesyl-L-cysteine
annotated property: definition
annotated target: A protein modification that effectively converts an L-cysteine residue to S-farnesyl-L-cysteine.
database_cross_reference: DeltaMass:293
database_cross_reference: OMSSA:42
database_cross_reference: PubMed:1409665
database_cross_reference: PubMed:15609361
database_cross_reference: PubMed:1872463
database_cross_reference: PubMed:2684976
database_cross_reference: RESID:AA0102
database_cross_reference: Unimod:44#C

Axiom
annotated source: S-farnesyl-L-cysteine
annotated property: has_exact_synonym
annotated target: (2R)-2-amino-3-([(2E,6E)-3,7,11-trimethyldodeca-2,6,10-trien-1-yl]sulfanyl)propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: S-farnesyl-L-cysteine
annotated property: has_exact_synonym
annotated target: 2-amino-3-(3,7,11-trimethyl-2,6,10-dodecatrienylthio)propanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-farnesyl-L-cysteine
annotated property: has_exact_synonym
annotated target: LIPID S-farnesyl cysteine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: S-farnesyl-L-cysteine
annotated property: has_exact_synonym
annotated target: S-farnesyl Cystenyl
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: S-farnesyl-L-cysteine
annotated property: has_exact_synonym
annotated target: S-farnesyl-L-cysteine
has_synonym_type: Name from RESID

Axiom
annotated source: S-farnesyl-L-cysteine
annotated property: has_exact_synonym
annotated target: SFarnCys
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: S-farnesyl-L-cysteine
annotated property: has_exact_synonym
annotated target: farnesylationc
has_synonym_type: Short label from OMSSA

Axiom
annotated source: S-farnesyl-L-cysteine
annotated property: has_related_synonym
annotated target: Farnesyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: S-farnesyl-L-cysteine
annotated property: has_related_synonym
annotated target: Farnesylation
has_synonym_type: Description (full_name) from Unimod

S-12-hydroxyfarnesyl-L-cysteine
type: Class
subclass of: MOD_01110
definition: A protein modification that effectively converts an L-cysteine residue to S-12-hydroxyfarnesyl-L-cysteine.
diff avg: 220.36
diff formula: C 15 H 24 N 0 O 1 S 0
diff mono: 220.18271
formula: C 18 H 29 N 1 O 2 S 1
mass avg: 323.5
mass mono: 323.1919
origin: C
source: natural
database_cross_reference: Unimod:376
database_cross_reference: uniprot.ptm:PTM-0269
has_exact_synonym: (2R)-2-amino-3-([(2E,6E,10Z)-12-hydroxy-3,7,11-trimethyldodeca-2,6,10-trien-1-yl]sulfanyl)propanoic acid
has_exact_synonym: 2-amino-3-(12-hydroxy-3,7,11-trimethyl-3,6,10-dodecatrienylthio)propanoic acid
has_exact_synonym: LIPID S-12-hydroxyfarnesyl cysteine
has_exact_synonym: S-12-hydroxyfarnesyl-L-cysteine
has_exact_synonym: S12HyFarnCys
has_obo_namespace: PSI-MOD
has_related_synonym: Hydroxyfarnesyl
has_related_synonym: hydroxyfarnesyl
id: MOD:00112

Axiom
annotated source: S-12-hydroxyfarnesyl-L-cysteine
annotated property: definition
annotated target: A protein modification that effectively converts an L-cysteine residue to S-12-hydroxyfarnesyl-L-cysteine.
database_cross_reference: PubMed:17790543
database_cross_reference: RESID:AA0103
database_cross_reference: Unimod:376

Axiom
annotated source: S-12-hydroxyfarnesyl-L-cysteine
annotated property: has_exact_synonym
annotated target: (2R)-2-amino-3-([(2E,6E,10Z)-12-hydroxy-3,7,11-trimethyldodeca-2,6,10-trien-1-yl]sulfanyl)propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: S-12-hydroxyfarnesyl-L-cysteine
annotated property: has_exact_synonym
annotated target: 2-amino-3-(12-hydroxy-3,7,11-trimethyl-3,6,10-dodecatrienylthio)propanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-12-hydroxyfarnesyl-L-cysteine
annotated property: has_exact_synonym
annotated target: LIPID S-12-hydroxyfarnesyl cysteine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: S-12-hydroxyfarnesyl-L-cysteine
annotated property: has_exact_synonym
annotated target: S-12-hydroxyfarnesyl-L-cysteine
has_synonym_type: Name from RESID

Axiom
annotated source: S-12-hydroxyfarnesyl-L-cysteine
annotated property: has_exact_synonym
annotated target: S12HyFarnCys
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: S-12-hydroxyfarnesyl-L-cysteine
annotated property: has_related_synonym
annotated target: Hydroxyfarnesyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: S-12-hydroxyfarnesyl-L-cysteine
annotated property: has_related_synonym
annotated target: hydroxyfarnesyl
has_synonym_type: Description (full_name) from Unimod

S-geranylgeranyl-L-cysteine
type: Class
subclass of: geranylgeranylated residue
subclass of: MOD_01110
definition: A protein modification that effectively converts an L-cysteine residue to S-geranylgeranyl-L-cysteine.
diff avg: 272.48
diff formula: C 20 H 32 N 0 O 0 S 0
diff mono: 272.2504
formula: C 23 H 37 N 1 O 1 S 1
mass avg: 375.62
mass mono: 375.25958
origin: C
source: natural
database_cross_reference: Unimod:48
database_cross_reference: uniprot.ptm:PTM-0278
has_exact_synonym: (2R)-2-amino-3-([(2E,6E,10Z)-12-hydroxy-3,7,11-trimethyldodeca-2,6,10-trien-1-yl]sulfanyl)propanoic acid
has_exact_synonym: 2-amino-3-(3,7,11,15-tetramethyl-2,6,10,14-hexadecatetraenylthio)propanoic acid
has_exact_synonym: LIPID S-geranylgeranyl cysteine
has_exact_synonym: S-geranylgeranyl
has_exact_synonym: S-geranylgeranyl-L-cysteine
has_exact_synonym: SGergerCys
has_exact_synonym: geranylgeranylc
has_obo_namespace: PSI-MOD
has_related_synonym: Geranyl-geranyl
has_related_synonym: GeranylGeranyl
id: MOD:00113
in_subset: PSI-MOD-slim
comment: DeltaMass calculates the mass with two double bonds rather than four

Axiom
annotated source: S-geranylgeranyl-L-cysteine
annotated property: definition
annotated target: A protein modification that effectively converts an L-cysteine residue to S-geranylgeranyl-L-cysteine.
database_cross_reference: DeltaMass:0
database_cross_reference: OMSSA:49
database_cross_reference: PubMed:1483450
database_cross_reference: PubMed:15609361
database_cross_reference: RESID:AA0104
database_cross_reference: Unimod:48#C

Axiom
annotated source: S-geranylgeranyl-L-cysteine
annotated property: has_exact_synonym
annotated target: (2R)-2-amino-3-([(2E,6E,10Z)-12-hydroxy-3,7,11-trimethyldodeca-2,6,10-trien-1-yl]sulfanyl)propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: S-geranylgeranyl-L-cysteine
annotated property: has_exact_synonym
annotated target: 2-amino-3-(3,7,11,15-tetramethyl-2,6,10,14-hexadecatetraenylthio)propanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-geranylgeranyl-L-cysteine
annotated property: has_exact_synonym
annotated target: LIPID S-geranylgeranyl cysteine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: S-geranylgeranyl-L-cysteine
annotated property: has_exact_synonym
annotated target: S-geranylgeranyl
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: S-geranylgeranyl-L-cysteine
annotated property: has_exact_synonym
annotated target: S-geranylgeranyl-L-cysteine
has_synonym_type: Name from RESID

Axiom
annotated source: S-geranylgeranyl-L-cysteine
annotated property: has_exact_synonym
annotated target: SGergerCys
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: S-geranylgeranyl-L-cysteine
annotated property: has_exact_synonym
annotated target: geranylgeranylc
has_synonym_type: Short label from OMSSA

Axiom
annotated source: S-geranylgeranyl-L-cysteine
annotated property: has_related_synonym
annotated target: Geranyl-geranyl
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: S-geranylgeranyl-L-cysteine
annotated property: has_related_synonym
annotated target: GeranylGeranyl
has_synonym_type: Agreed label from MS community

L-cysteine methyl ester
type: Class
subclass of: MOD_01682
subclass of: MOD_01689
definition: A protein modification that effectively converts an L-cysteine residue to L-cysteine methyl ester.
diff avg: 14.03
diff formula: C 1 H 2 N 0 O 0 S 0
diff mono: 14.01565
formula: C 4 H 8 N 1 O 2 S 1
mass avg: 134.17
mass mono: 134.02757
origin: C
source: natural
term spec: C-term
database_cross_reference: Unimod:34
database_cross_reference: uniprot.ptm:PTM-0105
has_exact_synonym: 2-amino-3-mercaptopropanoic methyl ester
has_exact_synonym: 2-amino-3-sulfanylpropanoic methyl ester
has_exact_synonym: L-cysteine methyl ester
has_exact_synonym: MOD_RES Cysteine methyl ester
has_exact_synonym: OMeCys
has_exact_synonym: mecysteine
has_exact_synonym: methyl (2R)-2-amino-3-sulfanylpropanoate
has_exact_synonym: methyl L-cysteinate
has_exact_synonym: methyl esterified L-cysteine
has_obo_namespace: PSI-MOD
has_related_synonym: Methyl
has_related_synonym: Methylation
id: MOD:00114
in_subset: PSI-MOD-slim
comment: Secondary to RESID:AA0102; secondary to RESID:AA0103; secondary to RESID:AA0104.

Axiom
annotated source: L-cysteine methyl ester
annotated property: definition
annotated target: A protein modification that effectively converts an L-cysteine residue to L-cysteine methyl ester.
database_cross_reference: PubMed:11875433
database_cross_reference: PubMed:1872463
database_cross_reference: RESID:AA0105
database_cross_reference: Unimod:34#C-term

Axiom
annotated source: L-cysteine methyl ester
annotated property: has_exact_synonym
annotated target: 2-amino-3-mercaptopropanoic methyl ester
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteine methyl ester
annotated property: has_exact_synonym
annotated target: 2-amino-3-sulfanylpropanoic methyl ester
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteine methyl ester
annotated property: has_exact_synonym
annotated target: L-cysteine methyl ester
has_synonym_type: Name from RESID

Axiom
annotated source: L-cysteine methyl ester
annotated property: has_exact_synonym
annotated target: MOD_RES Cysteine methyl ester
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-cysteine methyl ester
annotated property: has_exact_synonym
annotated target: OMeCys
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-cysteine methyl ester
annotated property: has_exact_synonym
annotated target: mecysteine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteine methyl ester
annotated property: has_exact_synonym
annotated target: methyl (2R)-2-amino-3-sulfanylpropanoate
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-cysteine methyl ester
annotated property: has_exact_synonym
annotated target: methyl L-cysteinate
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteine methyl ester
annotated property: has_exact_synonym
annotated target: methyl esterified L-cysteine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: L-cysteine methyl ester
annotated property: has_related_synonym
annotated target: Methyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: L-cysteine methyl ester
annotated property: has_related_synonym
annotated target: Methylation
has_synonym_type: Description (full_name) from Unimod

S-palmitoyl-L-cysteine
type: Class
subclass of: S-palmitoylated residue
subclass of: MOD_01684
definition: A protein modification that effectively converts an L-cysteine residue to S-palmitoyl-L-cysteine.
diff avg: 238.41
diff formula: C 16 H 30 N 0 O 1 S 0
diff mono: 238.22966
formula: C 19 H 35 N 1 O 2 S 1
mass avg: 341.55
mass mono: 341.23886
origin: C
source: natural
database_cross_reference: Unimod:47
database_cross_reference: uniprot.ptm:PTM-0281
has_exact_synonym: (2R)-2-amino-3-(hexadecanoylsulfanyl)propanoic acid
has_exact_synonym: 2-amino-3-(hexadecanoylthio)propanoic acid
has_exact_synonym: ACT_SITE S-palmitoyl cysteine intermediate
has_exact_synonym: LIPID S-palmitoyl cysteine
has_exact_synonym: S-hexadecanoylated L-cysteine
has_exact_synonym: S-palmitoyl-L-cysteine
has_exact_synonym: S-palmitoylated L-cysteine
has_exact_synonym: S-palmityl Cystenyl
has_exact_synonym: SPamCys
has_exact_synonym: cysteine hexadecanoate thioester
has_exact_synonym: cysteine palmitate thioester
has_obo_namespace: PSI-MOD
has_related_synonym: Palmitoyl
has_related_synonym: Palmitoylation
id: MOD:00115
in_subset: PSI-MOD-slim
comment: From DeltaMass: (name misspelled "S-palmityl Cystenyl" and formula incorrect, N and O reversed) Formula: C19H35O1N2S1 Monoisotopic Mass Change: 341.239 Average Mass Change: 341.556

Axiom
annotated source: S-palmitoyl-L-cysteine
annotated property: definition
annotated target: A protein modification that effectively converts an L-cysteine residue to S-palmitoyl-L-cysteine.
database_cross_reference: DeltaMass:303
database_cross_reference: PubMed:1872406
database_cross_reference: PubMed:3166978
database_cross_reference: PubMed:8180229
database_cross_reference: PubMed:8824274
database_cross_reference: RESID:AA0106
database_cross_reference: Unimod:47#C

Axiom
annotated source: S-palmitoyl-L-cysteine
annotated property: has_exact_synonym
annotated target: (2R)-2-amino-3-(hexadecanoylsulfanyl)propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: S-palmitoyl-L-cysteine
annotated property: has_exact_synonym
annotated target: 2-amino-3-(hexadecanoylthio)propanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-palmitoyl-L-cysteine
annotated property: has_exact_synonym
annotated target: ACT_SITE S-palmitoyl cysteine intermediate
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: S-palmitoyl-L-cysteine
annotated property: has_exact_synonym
annotated target: LIPID S-palmitoyl cysteine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: S-palmitoyl-L-cysteine
annotated property: has_exact_synonym
annotated target: S-hexadecanoylated L-cysteine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: S-palmitoyl-L-cysteine
annotated property: has_exact_synonym
annotated target: S-palmitoyl-L-cysteine
has_synonym_type: Name from RESID

Axiom
annotated source: S-palmitoyl-L-cysteine
annotated property: has_exact_synonym
annotated target: S-palmitoylated L-cysteine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: S-palmitoyl-L-cysteine
annotated property: has_exact_synonym
annotated target: S-palmityl Cystenyl
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: S-palmitoyl-L-cysteine
annotated property: has_exact_synonym
annotated target: SPamCys
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: S-palmitoyl-L-cysteine
annotated property: has_exact_synonym
annotated target: cysteine hexadecanoate thioester
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-palmitoyl-L-cysteine
annotated property: has_exact_synonym
annotated target: cysteine palmitate thioester
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-palmitoyl-L-cysteine
annotated property: has_related_synonym
annotated target: Palmitoyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: S-palmitoyl-L-cysteine
annotated property: has_related_synonym
annotated target: Palmitoylation
has_synonym_type: Description (full_name) from Unimod

S-diacylglycerol-L-cysteine
type: Class
subclass of: MOD_00905
subclass of: MOD_01155
definition: A protein modification that effectively converts an L-cysteine residue to S-diacylglycerol-L-cysteine.
origin: C
source: natural
database_cross_reference: uniprot.ptm:PTM-0274
has_exact_synonym: (2R)-2-amino-3-[(2S)-2-((9Z)-9-octadecenoyloxy)-3-(hexadecanoyloxy)propyl]sulfanylpropanoic acid
has_exact_synonym: 2-amino-3-[(S)-2-((Z)-9-octadecenoyloxy)-3-(hexadecanoyloxy)propyl]thiopropanoic acid
has_exact_synonym: LIPID S-diacylglycerol cysteine
has_exact_synonym: S-(1-2'-oleoyl-3'-palmitoyl-glycerol)cysteine
has_exact_synonym: S-(2',3'-diacylglycerol)-L-cysteine
has_exact_synonym: S-diacylglycerol-L-cysteine
has_exact_synonym: SAcyl2GlyceroCys
has_obo_namespace: PSI-MOD
has_related_synonym: Diacylglycerol
has_related_synonym: diacylglycerol
id: MOD:00116
in_subset: PSI-MOD-slim
comment: Incidental to RESID:AA0060.

Axiom
annotated source: S-diacylglycerol-L-cysteine
annotated property: definition
annotated target: A protein modification that effectively converts an L-cysteine residue to S-diacylglycerol-L-cysteine.
database_cross_reference: PubMed:10896212
database_cross_reference: PubMed:4575979
database_cross_reference: PubMed:9056182
database_cross_reference: RESID:AA0107
database_cross_reference: Unimod:377#C

Axiom
annotated source: S-diacylglycerol-L-cysteine
annotated property: has_exact_synonym
annotated target: (2R)-2-amino-3-[(2S)-2-((9Z)-9-octadecenoyloxy)-3-(hexadecanoyloxy)propyl]sulfanylpropanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: S-diacylglycerol-L-cysteine
annotated property: has_exact_synonym
annotated target: 2-amino-3-[(S)-2-((Z)-9-octadecenoyloxy)-3-(hexadecanoyloxy)propyl]thiopropanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-diacylglycerol-L-cysteine
annotated property: has_exact_synonym
annotated target: LIPID S-diacylglycerol cysteine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: S-diacylglycerol-L-cysteine
annotated property: has_exact_synonym
annotated target: S-(1-2'-oleoyl-3'-palmitoyl-glycerol)cysteine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-diacylglycerol-L-cysteine
annotated property: has_exact_synonym
annotated target: S-(2',3'-diacylglycerol)-L-cysteine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: S-diacylglycerol-L-cysteine
annotated property: has_exact_synonym
annotated target: S-diacylglycerol-L-cysteine
has_synonym_type: Name from RESID

Axiom
annotated source: S-diacylglycerol-L-cysteine
annotated property: has_exact_synonym
annotated target: SAcyl2GlyceroCys
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: S-diacylglycerol-L-cysteine
annotated property: has_related_synonym
annotated target: Diacylglycerol
has_synonym_type: Agreed label from MS community

Axiom
annotated source: S-diacylglycerol-L-cysteine
annotated property: has_related_synonym
annotated target: diacylglycerol
has_synonym_type: Description (full_name) from Unimod

S-(L-isoglutamyl)-L-cysteine
type: Class
subclass of: thioester crosslinked residues
subclass of: MOD_00946
subclass of: MOD_02046
definition: A protein modification that effectively crosslinks an L-cysteine residue and an L-glutamine residue by a thioester bond with the formation of S-(L-isoglutamyl)-L-cysteine and the release of ammonia.
diff avg: -17.03
diff formula: C 0 H -3 N -1 O 0 S 0
diff mono: -17.026548
formula: C 8 H 10 N 2 O 3 S 1
mass avg: 214.24
mass mono: 214.04121
origin: C, Q
source: natural
database_cross_reference: uniprot.ptm:PTM-0156
has_exact_synonym: (2S)-2-amino-5-[(2R)-2-amino-2-carboxyethyl]sulfanyl-5-oxopentanoic acid
has_exact_synonym: (S,R)-2-amino-4-[S-(2-amino-2-carboxyethyl)thiocarboxy]butanoic acid
has_exact_synonym: 2-amino-5-(2-amino-2-carboxyethyl)thio-5-oxopentanoic acid
has_exact_synonym: CROSSLNK Isoglutamyl cysteine thioester (Cys-Gln)
has_exact_synonym: S-(L-isoglutamyl)-L-cysteine
has_exact_synonym: S-gamma-glutamyl (crosslinked to cysteine)
has_exact_synonym: XLNK-SCys-5Glu(Gln)
has_exact_synonym: gamma-(S-cysteinyl)glutamic acid
has_obo_namespace: PSI-MOD
id: MOD:00117
in_subset: PSI-MOD-slim
comment: Cross-link 2; DeltaMass calculates the mass difference from glutamic acid rather than glutamine.

Axiom
annotated source: S-(L-isoglutamyl)-L-cysteine
annotated property: definition
annotated target: A protein modification that effectively crosslinks an L-cysteine residue and an L-glutamine residue by a thioester bond with the formation of S-(L-isoglutamyl)-L-cysteine and the release of ammonia.
database_cross_reference: ChEBI:22021
database_cross_reference: DeltaMass:0
database_cross_reference: PubMed:6838833
database_cross_reference: RESID:AA0108

Axiom
annotated source: S-(L-isoglutamyl)-L-cysteine
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-5-[(2R)-2-amino-2-carboxyethyl]sulfanyl-5-oxopentanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: S-(L-isoglutamyl)-L-cysteine
annotated property: has_exact_synonym
annotated target: (S,R)-2-amino-4-[S-(2-amino-2-carboxyethyl)thiocarboxy]butanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-(L-isoglutamyl)-L-cysteine
annotated property: has_exact_synonym
annotated target: 2-amino-5-(2-amino-2-carboxyethyl)thio-5-oxopentanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-(L-isoglutamyl)-L-cysteine
annotated property: has_exact_synonym
annotated target: CROSSLNK Isoglutamyl cysteine thioester (Cys-Gln)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: S-(L-isoglutamyl)-L-cysteine
annotated property: has_exact_synonym
annotated target: S-(L-isoglutamyl)-L-cysteine
has_synonym_type: Name from RESID

Axiom
annotated source: S-(L-isoglutamyl)-L-cysteine
annotated property: has_exact_synonym
annotated target: S-gamma-glutamyl (crosslinked to cysteine)
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: S-(L-isoglutamyl)-L-cysteine
annotated property: has_exact_synonym
annotated target: XLNK-SCys-5Glu(Gln)
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: S-(L-isoglutamyl)-L-cysteine
annotated property: has_exact_synonym
annotated target: gamma-(S-cysteinyl)glutamic acid
has_synonym_type: Alternate name from RESID

2'-(S-L-cysteinyl)-L-histidine
type: Class
subclass of: MOD_00687
subclass of: MOD_02048
definition: A protein modification that effectively cross-links an L-cysteine residue and an L-histidine residue by a thioether bond to form 2'-(S-L-cysteinyl)-L-histidine.
diff avg: -2.02
diff formula: C 0 H -2 N 0 O 0 S 0
diff mono: -2.01565
formula: C 9 H 10 N 4 O 2 S 1
mass avg: 238.26
mass mono: 238.05244
origin: C, H
source: natural
database_cross_reference: uniprot.ptm:PTM-0005
has_exact_synonym: (2R)-2-amino-3-[(4-[(2S)-2-amino-2-carboxyethyl]-1H-imidazol-2-yl)sulfanyl]propanoic acid
has_exact_synonym: (2S)-2-amino-3-[2-([(2R)-2-amino-2-carboxyethyl]sulfanyl)-1H-imidazol-4-yl]propanoic acid
has_exact_synonym: 2'-(L-cystein-S-yl)-L-histidine
has_exact_synonym: CROSSLNK 2'-(S-cysteinyl)-histidine (Cys-His)
has_exact_synonym: S-(2'-histidyl)cysteine
has_exact_synonym: S-(2-histidyl)- (crosslinked to cysteine)
has_exact_synonym: XLNK-SCys-2'His
has_obo_namespace: PSI-MOD
id: MOD:00118
comment: Cross-link 2.

Axiom
annotated source: 2'-(S-L-cysteinyl)-L-histidine
annotated property: definition
annotated target: A protein modification that effectively cross-links an L-cysteine residue and an L-histidine residue by a thioether bond to form 2'-(S-L-cysteinyl)-L-histidine.
database_cross_reference: DeltaMass:0
database_cross_reference: PubMed:6210696
database_cross_reference: RESID:AA0109

Axiom
annotated source: 2'-(S-L-cysteinyl)-L-histidine
annotated property: has_exact_synonym
annotated target: (2R)-2-amino-3-[(4-[(2S)-2-amino-2-carboxyethyl]-1H-imidazol-2-yl)sulfanyl]propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: 2'-(S-L-cysteinyl)-L-histidine
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-3-[2-([(2R)-2-amino-2-carboxyethyl]sulfanyl)-1H-imidazol-4-yl]propanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 2'-(S-L-cysteinyl)-L-histidine
annotated property: has_exact_synonym
annotated target: 2'-(L-cystein-S-yl)-L-histidine
has_synonym_type: Name from RESID

Axiom
annotated source: 2'-(S-L-cysteinyl)-L-histidine
annotated property: has_exact_synonym
annotated target: CROSSLNK 2'-(S-cysteinyl)-histidine (Cys-His)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: 2'-(S-L-cysteinyl)-L-histidine
annotated property: has_exact_synonym
annotated target: S-(2'-histidyl)cysteine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 2'-(S-L-cysteinyl)-L-histidine
annotated property: has_exact_synonym
annotated target: S-(2-histidyl)- (crosslinked to cysteine)
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: 2'-(S-L-cysteinyl)-L-histidine
annotated property: has_exact_synonym
annotated target: XLNK-SCys-2'His
has_synonym_type: Short label curated by PSI-MOD

L-lanthionine (Cys-Ser)
type: Class
subclass of: MOD_00954
subclass of: MOD_01839
subclass of: MOD_02055
definition: A protein modification that effectively cross-links an L-cysteine residue and an L-serine residue by a thioether bond to form L-lanthionine.
diff avg: -18.02
diff formula: C 0 H -2 N 0 O -1 S 0
diff mono: -18.010565
formula: C 6 H 8 N 2 O 2 S 1
mass avg: 172.2
mass mono: 172.03065
origin: C, S
source: artifact
has_exact_synonym: (2R,2'R)-3,3'-sulfanediylbis(2-aminopropanoic acid)
has_exact_synonym: (R)-S-(2-amino-2-carboxyethyl)-L-cysteine
has_exact_synonym: (R,R)-2,6-diamino-4-thiaheptanedioic acid
has_exact_synonym: (R,R)-3,3'-thiobis-(2-aminopropanoic acid)
has_exact_synonym: (R,R)-bis(2-amino-2-carboxyethyl)sulfide
has_exact_synonym: 2-amino-3-(2-amino-2-carboxyethyl)sulfanylpropanoic acid
has_exact_synonym: 3,3'-thiobis-L-alanine
has_exact_synonym: L-lanthionine
has_exact_synonym: XLNK-SCys-(L)3Dha
has_obo_namespace: PSI-MOD
id: MOD:00119
comment: Cross-link 2. The natural occurrence of this modification is rare. For the more common modification see MOD:00120 meso-lanthionine [JSG].

Axiom
annotated source: L-lanthionine (Cys-Ser)
annotated property: definition
annotated target: A protein modification that effectively cross-links an L-cysteine residue and an L-serine residue by a thioether bond to form L-lanthionine.
database_cross_reference: ChEBI:21347
database_cross_reference: DeltaMass:7
database_cross_reference: RESID:AA0110#CSX

Axiom
annotated source: L-lanthionine (Cys-Ser)
annotated property: has_exact_synonym
annotated target: (2R,2'R)-3,3'-sulfanediylbis(2-aminopropanoic acid)
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-lanthionine (Cys-Ser)
annotated property: has_exact_synonym
annotated target: (R)-S-(2-amino-2-carboxyethyl)-L-cysteine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-lanthionine (Cys-Ser)
annotated property: has_exact_synonym
annotated target: (R,R)-2,6-diamino-4-thiaheptanedioic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-lanthionine (Cys-Ser)
annotated property: has_exact_synonym
annotated target: (R,R)-3,3'-thiobis-(2-aminopropanoic acid)
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-lanthionine (Cys-Ser)
annotated property: has_exact_synonym
annotated target: (R,R)-bis(2-amino-2-carboxyethyl)sulfide
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-lanthionine (Cys-Ser)
annotated property: has_exact_synonym
annotated target: 2-amino-3-(2-amino-2-carboxyethyl)sulfanylpropanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-lanthionine (Cys-Ser)
annotated property: has_exact_synonym
annotated target: 3,3'-thiobis-L-alanine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-lanthionine (Cys-Ser)
annotated property: has_exact_synonym
annotated target: L-lanthionine
has_synonym_type: Name from RESID

Axiom
annotated source: L-lanthionine (Cys-Ser)
annotated property: has_exact_synonym
annotated target: XLNK-SCys-(L)3Dha
has_synonym_type: Short label curated by PSI-MOD

meso-lanthionine
type: Class
subclass of: MOD_00954
subclass of: MOD_01841
subclass of: MOD_02055
definition: A protein modification that effectively cross-links an L-cysteine residue and an L-serine residue by a thioether bond to form meso-lanthionine.
diff avg: -18.02
diff formula: C 0 H -2 N 0 O -1 S 0
diff mono: -18.010565
formula: C 6 H 8 N 2 O 2 S 1
mass avg: 172.2
mass mono: 172.03065
origin: C, S
source: natural
database_cross_reference: uniprot.ptm:PTM-0164
has_exact_synonym: (2R,2'S)-3,3'-sulfanediylbis(2-aminopropanoic acid)
has_exact_synonym: (2R,2'S)-3,3'-thiobis-(2-aminopropanoic acid)
has_exact_synonym: (2R,6S)-2,6-diamino-4-thiaheptanedioic acid
has_exact_synonym: (2R,6S)-meso-lanthionine
has_exact_synonym: (2S)-2-amino-3-[[(2R)-2-amino-2-carboxyethyl]sulfanyl]propanoic acid
has_exact_synonym: (R)-S-(2-amino-2-carboxyethyl)-D-cysteine
has_exact_synonym: (R,S)-bis(2-amino-2-carboxyethyl)sulfide
has_exact_synonym: 3,3'-thiobis-meso-alanine
has_exact_synonym: CROSSLNK Lanthionine (Cys-Ser)
has_exact_synonym: CROSSLNK Lanthionine (Ser-Cys)
has_exact_synonym: XLNK-SCys-(D)3Dha
has_exact_synonym: cysteine-3-D-alanine thioether
has_exact_synonym: meso-lanthionine
has_obo_namespace: PSI-MOD
has_related_synonym: (2S,6R)-meso-lanthionine
id: MOD:00120
comment: Cross-link 2.

Axiom
annotated source: meso-lanthionine
annotated property: definition
annotated target: A protein modification that effectively cross-links an L-cysteine residue and an L-serine residue by a thioether bond to form meso-lanthionine.
database_cross_reference: PubMed:15023056
database_cross_reference: PubMed:3769923
database_cross_reference: RESID:AA0111

Axiom
annotated source: meso-lanthionine
annotated property: has_exact_synonym
annotated target: (2R,2'S)-3,3'-sulfanediylbis(2-aminopropanoic acid)
has_synonym_type: Systematic name from RESID

Axiom
annotated source: meso-lanthionine
annotated property: has_exact_synonym
annotated target: (2R,2'S)-3,3'-thiobis-(2-aminopropanoic acid)
has_synonym_type: Alternate name from RESID

Axiom
annotated source: meso-lanthionine
annotated property: has_exact_synonym
annotated target: (2R,6S)-2,6-diamino-4-thiaheptanedioic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: meso-lanthionine
annotated property: has_exact_synonym
annotated target: (2R,6S)-meso-lanthionine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: meso-lanthionine
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-3-[[(2R)-2-amino-2-carboxyethyl]sulfanyl]propanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: meso-lanthionine
annotated property: has_exact_synonym
annotated target: (R)-S-(2-amino-2-carboxyethyl)-D-cysteine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: meso-lanthionine
annotated property: has_exact_synonym
annotated target: (R,S)-bis(2-amino-2-carboxyethyl)sulfide
has_synonym_type: Alternate name from RESID

Axiom
annotated source: meso-lanthionine
annotated property: has_exact_synonym
annotated target: 3,3'-thiobis-meso-alanine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: meso-lanthionine
annotated property: has_exact_synonym
annotated target: CROSSLNK Lanthionine (Cys-Ser)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: meso-lanthionine
annotated property: has_exact_synonym
annotated target: CROSSLNK Lanthionine (Ser-Cys)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: meso-lanthionine
annotated property: has_exact_synonym
annotated target: XLNK-SCys-(D)3Dha
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: meso-lanthionine
annotated property: has_exact_synonym
annotated target: cysteine-3-D-alanine thioether
has_synonym_type: Alternate name from RESID

Axiom
annotated source: meso-lanthionine
annotated property: has_exact_synonym
annotated target: meso-lanthionine
has_synonym_type: Name from RESID

Axiom
annotated source: meso-lanthionine
annotated property: has_related_synonym
annotated target: (2S,6R)-meso-lanthionine
has_synonym_type: Misnomer tagged alternate name from RESID

(2S,3S,2'R)-3-methyllanthionine
type: Class
subclass of: MOD_01981
definition: A protein modification that effectively cross-links an L-cysteine residue and an L-threonine residue by a thioether bond to form (2S,3S,2'R)-3-methyllanthionine.
diff avg: -18.02
diff formula: C 0 H -2 N 0 O -1 S 0
diff mono: -18.010565
formula: C 7 H 10 N 2 O 2 S 1
mass avg: 186.23
mass mono: 186.0463
origin: C, T
source: natural
database_cross_reference: uniprot.ptm:PTM-0067
has_exact_synonym: (2S,3S)-2-amino-3-([(2R)-2-amino-2-carboxyethyl]sulfanyl)butanoic acid
has_exact_synonym: (2S,3S,2'R)-2-amino-3-[(2-amino-2-carboxyethyl)thio]butanoic acid
has_exact_synonym: (2S,3S,2'R)-3-methyllanthionine
has_exact_synonym: (2S,3S,6R)-2,6-diamino-3-methyl-4-thiaheptanedioic acid
has_exact_synonym: (2S,3S,6R)-3-methyllanthionine
has_exact_synonym: (2S-[2R*,3R*(S*)])-2-amino-3-[(2-amino-2-carboxyethyl)thio]butanoic acid
has_exact_synonym: 3-methyl-D,L-lanthionine
has_exact_synonym: CROSSLNK Beta-methyllanthionine (Cys-Thr)
has_exact_synonym: CROSSLNK Beta-methyllanthionine (Thr-Cys)
has_exact_synonym: XLNK-SCys-3Dhb
has_exact_synonym: cysteine-3-D-butyrine thioether
has_obo_namespace: PSI-MOD
id: MOD:00121
comment: Cross-link 2.

Axiom
annotated source: (2S,3S,2'R)-3-methyllanthionine
annotated property: definition
annotated target: A protein modification that effectively cross-links an L-cysteine residue and an L-threonine residue by a thioether bond to form (2S,3S,2'R)-3-methyllanthionine.
database_cross_reference: PubMed:3769923
database_cross_reference: RESID:AA0112

Axiom
annotated source: (2S,3S,2'R)-3-methyllanthionine
annotated property: has_exact_synonym
annotated target: (2S,3S)-2-amino-3-([(2R)-2-amino-2-carboxyethyl]sulfanyl)butanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: (2S,3S,2'R)-3-methyllanthionine
annotated property: has_exact_synonym
annotated target: (2S,3S,2'R)-2-amino-3-[(2-amino-2-carboxyethyl)thio]butanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: (2S,3S,2'R)-3-methyllanthionine
annotated property: has_exact_synonym
annotated target: (2S,3S,2'R)-3-methyllanthionine
has_synonym_type: Name from RESID

Axiom
annotated source: (2S,3S,2'R)-3-methyllanthionine
annotated property: has_exact_synonym
annotated target: (2S,3S,6R)-2,6-diamino-3-methyl-4-thiaheptanedioic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: (2S,3S,2'R)-3-methyllanthionine
annotated property: has_exact_synonym
annotated target: (2S,3S,6R)-3-methyllanthionine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: (2S,3S,2'R)-3-methyllanthionine
annotated property: has_exact_synonym
annotated target: (2S-[2R*,3R*(S*)])-2-amino-3-[(2-amino-2-carboxyethyl)thio]butanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: (2S,3S,2'R)-3-methyllanthionine
annotated property: has_exact_synonym
annotated target: 3-methyl-D,L-lanthionine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: (2S,3S,2'R)-3-methyllanthionine
annotated property: has_exact_synonym
annotated target: CROSSLNK Beta-methyllanthionine (Cys-Thr)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: (2S,3S,2'R)-3-methyllanthionine
annotated property: has_exact_synonym
annotated target: CROSSLNK Beta-methyllanthionine (Thr-Cys)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: (2S,3S,2'R)-3-methyllanthionine
annotated property: has_exact_synonym
annotated target: XLNK-SCys-3Dhb
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: (2S,3S,2'R)-3-methyllanthionine
annotated property: has_exact_synonym
annotated target: cysteine-3-D-butyrine thioether
has_synonym_type: Alternate name from RESID

3'-(S-L-cysteinyl)-L-tyrosine
type: Class
subclass of: MOD_00687
subclass of: MOD_02058
definition: A protein modification that effectively cross-links an L-cysteine residue and an L-tyrosine residue by a thioether bond to form 2-(S-L-cysteinyl)-L-tyrosine.
diff avg: -2.02
diff formula: C 0 H -2 N 0 O 0 S 0
diff mono: -2.01565
formula: C 12 H 12 N 2 O 3 S 1
mass avg: 264.3
mass mono: 264.05685
origin: C, Y
source: natural
database_cross_reference: uniprot.ptm:PTM-0019
has_exact_synonym: (2S)-2-amino-3-(3-[(2R)2-amino-2-carboxyethylsulfanyl]-4-hydroxyphenyl)propanoic acid
has_exact_synonym: 2-amino-3-[3-(2-amino-2-carboxyethylthio)-4-hydroxyphenyl]propanoic acid
has_exact_synonym: 3'-(L-cystein-S-yl)-L-tyrosine
has_exact_synonym: 3'-(cystein-S-yl)tyrosine
has_exact_synonym: CROSSLNK 3'-(S-cysteinyl)-tyrosine (Cys-Tyr)
has_exact_synonym: CROSSLNK 3'-(S-cysteinyl)-tyrosine (Tyr-Cys)
has_exact_synonym: S-(3-Tyr) (Crosslinked to Cysteine)
has_exact_synonym: S-(tyros-3'-yl)cysteine
has_exact_synonym: XLNK-SCys-3'Tyr
has_obo_namespace: PSI-MOD
id: MOD:00122
comment: Cross-link 2.

Axiom
annotated source: 3'-(S-L-cysteinyl)-L-tyrosine
annotated property: definition
annotated target: A protein modification that effectively cross-links an L-cysteine residue and an L-tyrosine residue by a thioether bond to form 2-(S-L-cysteinyl)-L-tyrosine.
database_cross_reference: DeltaMass:0
database_cross_reference: PubMed:15917234
database_cross_reference: PubMed:2002850
database_cross_reference: RESID:AA0113

Axiom
annotated source: 3'-(S-L-cysteinyl)-L-tyrosine
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-3-(3-[(2R)2-amino-2-carboxyethylsulfanyl]-4-hydroxyphenyl)propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: 3'-(S-L-cysteinyl)-L-tyrosine
annotated property: has_exact_synonym
annotated target: 2-amino-3-[3-(2-amino-2-carboxyethylthio)-4-hydroxyphenyl]propanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 3'-(S-L-cysteinyl)-L-tyrosine
annotated property: has_exact_synonym
annotated target: 3'-(L-cystein-S-yl)-L-tyrosine
has_synonym_type: Name from RESID

Axiom
annotated source: 3'-(S-L-cysteinyl)-L-tyrosine
annotated property: has_exact_synonym
annotated target: 3'-(cystein-S-yl)tyrosine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 3'-(S-L-cysteinyl)-L-tyrosine
annotated property: has_exact_synonym
annotated target: CROSSLNK 3'-(S-cysteinyl)-tyrosine (Cys-Tyr)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: 3'-(S-L-cysteinyl)-L-tyrosine
annotated property: has_exact_synonym
annotated target: CROSSLNK 3'-(S-cysteinyl)-tyrosine (Tyr-Cys)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: 3'-(S-L-cysteinyl)-L-tyrosine
annotated property: has_exact_synonym
annotated target: S-(3-Tyr) (Crosslinked to Cysteine)
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: 3'-(S-L-cysteinyl)-L-tyrosine
annotated property: has_exact_synonym
annotated target: S-(tyros-3'-yl)cysteine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 3'-(S-L-cysteinyl)-L-tyrosine
annotated property: has_exact_synonym
annotated target: XLNK-SCys-3'Tyr
has_synonym_type: Short label curated by PSI-MOD

N6-carboxy-L-lysine
type: Class
subclass of: MOD_00912
subclass of: MOD_01152
definition: A protein modification that effectively converts an L-lysine residue to N6-carboxy-L-lysine.
diff avg: 44.01
diff formula: C 1 H 0 N 0 O 2
diff mono: 43.98983
formula: C 7 H 12 N 2 O 3
mass avg: 172.18
mass mono: 172.0848
origin: K
source: natural
database_cross_reference: Unimod:299
database_cross_reference: uniprot.ptm:PTM-0191
has_exact_synonym: (2S)-2-amino-6-(carboxyamino)hexanoic acid
has_exact_synonym: 2-amino-6-carbamic hexanoic acid
has_exact_synonym: MOD_RES N6-carboxylysine
has_exact_synonym: N6-carboxy-L-lysine
has_exact_synonym: N6-carboxylysine
has_exact_synonym: N6CbxLys
has_exact_synonym: lysine NZ-carboxylic acid
has_obo_namespace: PSI-MOD
has_related_synonym: Carboxy
has_related_synonym: Carboxylation
has_related_synonym: N6-carbamyllysine
id: MOD:00123
in_subset: PSI-MOD-slim

Axiom
annotated source: N6-carboxy-L-lysine
annotated property: definition
annotated target: A protein modification that effectively converts an L-lysine residue to N6-carboxy-L-lysine.
database_cross_reference: PubMed:11369851
database_cross_reference: PubMed:4436319
database_cross_reference: PubMed:637859
database_cross_reference: PubMed:7754395
database_cross_reference: RESID:AA0114
database_cross_reference: Unimod:299#K

Axiom
annotated source: N6-carboxy-L-lysine
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-6-(carboxyamino)hexanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N6-carboxy-L-lysine
annotated property: has_exact_synonym
annotated target: 2-amino-6-carbamic hexanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N6-carboxy-L-lysine
annotated property: has_exact_synonym
annotated target: MOD_RES N6-carboxylysine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N6-carboxy-L-lysine
annotated property: has_exact_synonym
annotated target: N6-carboxy-L-lysine
has_synonym_type: Name from RESID

Axiom
annotated source: N6-carboxy-L-lysine
annotated property: has_exact_synonym
annotated target: N6-carboxylysine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N6-carboxy-L-lysine
annotated property: has_exact_synonym
annotated target: N6CbxLys
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: N6-carboxy-L-lysine
annotated property: has_exact_synonym
annotated target: lysine NZ-carboxylic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N6-carboxy-L-lysine
annotated property: has_related_synonym
annotated target: Carboxy
has_synonym_type: Interim label from Unimod

Axiom
annotated source: N6-carboxy-L-lysine
annotated property: has_related_synonym
annotated target: Carboxylation
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: N6-carboxy-L-lysine
annotated property: has_related_synonym
annotated target: N6-carbamyllysine
has_synonym_type: Misnomer tagged alternate name from RESID

N6-1-carboxyethyl-L-lysine
type: Class
subclass of: MOD_00912
definition: A protein modification that effectively converts an L-lysine residue to N6-1-carboxyethyl-L-lysine.
diff avg: 72.06
diff formula: C 3 H 4 N 0 O 2
diff mono: 72.021126
formula: C 9 H 16 N 2 O 3
mass avg: 200.24
mass mono: 200.11609
origin: K
source: natural
database_cross_reference: Unimod:378
database_cross_reference: uniprot.ptm:PTM-0189
has_exact_synonym: (2S)-2-amino-6-([(1S)-1-carboxyethyl]amino)hexanoic acid
has_exact_synonym: MOD_RES N6-1-carboxyethyl lysine
has_exact_synonym: N6-(1-carboxyethyl)-L-lysine
has_exact_synonym: N6-(1-carboxyethyl)lysine
has_exact_synonym: N6CbzEtLys
has_exact_synonym: NZ-(1-carboxyethyl)lysine
has_obo_namespace: PSI-MOD
has_related_synonym: Carboxyethyl
has_related_synonym: carboxyethyl
id: MOD:00124
in_subset: PSI-MOD-slim

Axiom
annotated source: N6-1-carboxyethyl-L-lysine
annotated property: definition
annotated target: A protein modification that effectively converts an L-lysine residue to N6-1-carboxyethyl-L-lysine.
database_cross_reference: PubMed:3123486
database_cross_reference: PubMed:8253186
database_cross_reference: PubMed:8421682
database_cross_reference: RESID:AA0115
database_cross_reference: Unimod:378#K

Axiom
annotated source: N6-1-carboxyethyl-L-lysine
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-6-([(1S)-1-carboxyethyl]amino)hexanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N6-1-carboxyethyl-L-lysine
annotated property: has_exact_synonym
annotated target: MOD_RES N6-1-carboxyethyl lysine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N6-1-carboxyethyl-L-lysine
annotated property: has_exact_synonym
annotated target: N6-(1-carboxyethyl)-L-lysine
has_synonym_type: Name from RESID

Axiom
annotated source: N6-1-carboxyethyl-L-lysine
annotated property: has_exact_synonym
annotated target: N6-(1-carboxyethyl)lysine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N6-1-carboxyethyl-L-lysine
annotated property: has_exact_synonym
annotated target: N6CbzEtLys
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: N6-1-carboxyethyl-L-lysine
annotated property: has_exact_synonym
annotated target: NZ-(1-carboxyethyl)lysine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N6-1-carboxyethyl-L-lysine
annotated property: has_related_synonym
annotated target: Carboxyethyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: N6-1-carboxyethyl-L-lysine
annotated property: has_related_synonym
annotated target: carboxyethyl
has_synonym_type: Description (full_name) from Unimod

hypusine
type: Class
subclass of: MOD_00912
subclass of: MOD_01884
subclass of: Restriction
  on property: derives from
  some values from: MOD_01880
definition: A protein modification that effectively converts an L-lysine residue to hypusine, N6-(4-amino-2-hydroxybutyl)-L-lysine.
diff avg: 87.12
diff formula: C 4 H 9 N 1 O 1
diff mono: 87.06841
formula: C 10 H 21 N 3 O 2
mass avg: 215.3
mass mono: 215.16338
origin: K
source: natural
database_cross_reference: Unimod:379
database_cross_reference: uniprot.ptm:PTM-0150
has_exact_synonym: (2S)-2-amino-6-([(2R)-4-amino-2-hydroxybutyl]amino)hexanoic acid
has_exact_synonym: (2S,9R)-2,11-diazanyl-9-hydroxy-7-azaundecanoic acid
has_exact_synonym: (2S,9R)-hypusine
has_exact_synonym: 2-azanyl-6-[(4-azanyl-2-hydroxybutyl)azanyl]hexanoic acid
has_exact_synonym: Hypu
has_exact_synonym: L-hypusine
has_exact_synonym: MOD_RES Hypusine
has_exact_synonym: N-(4-NH2-2-OH-butyl)- (of Lysine)
has_exact_synonym: N6-(4-amino-2-hydroxybutyl)-L-lysine
has_obo_namespace: PSI-MOD
has_related_synonym: Hypusine
has_related_synonym: hypusine
id: MOD:00125
in_subset: PSI-MOD-slim
comment: This modification occurs uniquely in translation initiation factor eIF-5A [JSG].

Axiom
annotated source: hypusine
annotated property: definition
annotated target: A protein modification that effectively converts an L-lysine residue to hypusine, N6-(4-amino-2-hydroxybutyl)-L-lysine.
database_cross_reference: DeltaMass:0
database_cross_reference: PubMed:6806267
database_cross_reference: PubMed:8108861
database_cross_reference: RESID:AA0116
database_cross_reference: Unimod:379#K

Axiom
annotated source: hypusine
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-6-([(2R)-4-amino-2-hydroxybutyl]amino)hexanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: hypusine
annotated property: has_exact_synonym
annotated target: (2S,9R)-2,11-diazanyl-9-hydroxy-7-azaundecanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: hypusine
annotated property: has_exact_synonym
annotated target: (2S,9R)-hypusine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: hypusine
annotated property: has_exact_synonym
annotated target: 2-azanyl-6-[(4-azanyl-2-hydroxybutyl)azanyl]hexanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: hypusine
annotated property: has_exact_synonym
annotated target: Hypu
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: hypusine
annotated property: has_exact_synonym
annotated target: L-hypusine
has_synonym_type: Name from RESID

Axiom
annotated source: hypusine
annotated property: has_exact_synonym
annotated target: MOD_RES Hypusine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: hypusine
annotated property: has_exact_synonym
annotated target: N-(4-NH2-2-OH-butyl)- (of Lysine)
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: hypusine
annotated property: has_exact_synonym
annotated target: N6-(4-amino-2-hydroxybutyl)-L-lysine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: hypusine
annotated property: has_related_synonym
annotated target: Hypusine
has_synonym_type: Agreed label from MS community

Axiom
annotated source: hypusine
annotated property: has_related_synonym
annotated target: hypusine
has_synonym_type: Description (full_name) from Unimod

N6-biotinyl-L-lysine
type: Class
subclass of: MOD_01875
subclass of: MOD_01885
definition: A protein modification that effectively converts an L-lysine residue to N6-biotinyl-L-lysine.
diff avg: 226.29
diff formula: C 10 H 14 N 2 O 2 S 1
diff mono: 226.0776
formula: C 16 H 26 N 4 O 3 S 1
mass avg: 354.47
mass mono: 354.17258
origin: K
source: natural
database_cross_reference: Unimod:3
database_cross_reference: uniprot.ptm:PTM-0382
has_exact_synonym: (2S)-2-amino-6-(5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoylamino)hexanoic acid
has_exact_synonym: (3aS-(3aalpha,4beta,6aalpha))-N6-(5-(hexahydro-2-oxo-1H-thieno(3,4-d)imidazol-4-yl)-1-oxopentyl)-L-lysine
has_exact_synonym: MOD_RES N6-biotinyllysine
has_exact_synonym: N6-[5-((3aS,4S,6aR)-hexahydro-2-oxo-1H-thieno[3,4-d]imidazol-4-yl)-1-oxopentyl]-L-lysine
has_exact_synonym: N6-biotinyl-L-lysine
has_exact_synonym: N6-biotinyllysine
has_exact_synonym: N6BtnLys
has_exact_synonym: biocytin
has_exact_synonym: biotinyl lysyl
has_exact_synonym: epsilon-N-biotinyllysine
has_obo_namespace: PSI-MOD
has_related_synonym: Biotin
has_related_synonym: Biotinylation
id: MOD:00126
in_subset: PSI-MOD-slim
comment: From DeltaMass: Average Mass: 354 Formula:C 16 H 26 O 4 N 3 S 1 (formula incorrect, N and O reversed) Monoisotopic Mass Change:354.172 Average Mass Change:354.471 References:PE Sciex.

Axiom
annotated source: N6-biotinyl-L-lysine
annotated property: definition
annotated target: A protein modification that effectively converts an L-lysine residue to N6-biotinyl-L-lysine.
database_cross_reference: DeltaMass:305
database_cross_reference: PubMed:16109483
database_cross_reference: PubMed:3178228
database_cross_reference: PubMed:7948875
database_cross_reference: PubMed:8747466
database_cross_reference: RESID:AA0117
database_cross_reference: Unimod:3#K

Axiom
annotated source: N6-biotinyl-L-lysine
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-6-(5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoylamino)hexanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N6-biotinyl-L-lysine
annotated property: has_exact_synonym
annotated target: (3aS-(3aalpha,4beta,6aalpha))-N6-(5-(hexahydro-2-oxo-1H-thieno(3,4-d)imidazol-4-yl)-1-oxopentyl)-L-lysine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N6-biotinyl-L-lysine
annotated property: has_exact_synonym
annotated target: MOD_RES N6-biotinyllysine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N6-biotinyl-L-lysine
annotated property: has_exact_synonym
annotated target: N6-[5-((3aS,4S,6aR)-hexahydro-2-oxo-1H-thieno[3,4-d]imidazol-4-yl)-1-oxopentyl]-L-lysine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N6-biotinyl-L-lysine
annotated property: has_exact_synonym
annotated target: N6-biotinyl-L-lysine
has_synonym_type: Name from RESID

Axiom
annotated source: N6-biotinyl-L-lysine
annotated property: has_exact_synonym
annotated target: N6-biotinyllysine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N6-biotinyl-L-lysine
annotated property: has_exact_synonym
annotated target: N6BtnLys
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: N6-biotinyl-L-lysine
annotated property: has_exact_synonym
annotated target: biocytin
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N6-biotinyl-L-lysine
annotated property: has_exact_synonym
annotated target: biotinyl lysyl
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: N6-biotinyl-L-lysine
annotated property: has_exact_synonym
annotated target: epsilon-N-biotinyllysine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N6-biotinyl-L-lysine
annotated property: has_related_synonym
annotated target: Biotin
has_synonym_type: Agreed label from MS community

Axiom
annotated source: N6-biotinyl-L-lysine
annotated property: has_related_synonym
annotated target: Biotinylation
has_synonym_type: Description (full_name) from Unimod

N6-lipoyl-L-lysine
type: Class
subclass of: MOD_01875
definition: A protein modification that effectively converts an L-lysine residue to N6-lipoyl-L-lysine.
diff avg: 188.3
diff formula: C 8 H 12 N 0 O 1 S 2
diff mono: 188.03296
formula: C 14 H 24 N 2 O 2 S 2
mass avg: 316.48
mass mono: 316.12793
origin: K
source: natural
database_cross_reference: Unimod:42
database_cross_reference: uniprot.ptm:PTM-0383
has_exact_synonym: (2S)-2-amino-6-(5-[(3R)-1,2-dithiolan-3-yl]pentanamido)hexanoic acid
has_exact_synonym: (2S)-2-amino-6-[(5-[(3R)-1,2-dithiolan-3-yl]pentanoyl)amino]hexanoic acid
has_exact_synonym: (2S,6'R)-2-amino-6-(6,8-dithiooctanamido)hexanoic acid
has_exact_synonym: 2-amino-6-(5-[1,2-dithiolan-3-yl]-1-oxopentyl)aminohexanoic acid
has_exact_synonym: MOD_RES N6-lipoyllysine
has_exact_synonym: N-Lipoyl- (on Lysine)
has_exact_synonym: N6-6,8-dithiooctanoyllysine
has_exact_synonym: N6-lipoyl-L-lysine
has_exact_synonym: N6-lipoyllysine
has_exact_synonym: N6LipLys
has_exact_synonym: lipoylk
has_obo_namespace: PSI-MOD
has_related_synonym: Lipoyl
id: MOD:00127
in_subset: PSI-MOD-slim

Axiom
annotated source: N6-lipoyl-L-lysine
annotated property: definition
annotated target: A protein modification that effectively converts an L-lysine residue to N6-lipoyl-L-lysine.
database_cross_reference: DeltaMass:0
database_cross_reference: OMSSA:67
database_cross_reference: PubMed:3421911
database_cross_reference: PubMed:3522581
database_cross_reference: PubMed:7719855
database_cross_reference: RESID:AA0118
database_cross_reference: Unimod:42#K

Axiom
annotated source: N6-lipoyl-L-lysine
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-6-(5-[(3R)-1,2-dithiolan-3-yl]pentanamido)hexanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N6-lipoyl-L-lysine
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-6-[(5-[(3R)-1,2-dithiolan-3-yl]pentanoyl)amino]hexanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N6-lipoyl-L-lysine
annotated property: has_exact_synonym
annotated target: (2S,6'R)-2-amino-6-(6,8-dithiooctanamido)hexanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N6-lipoyl-L-lysine
annotated property: has_exact_synonym
annotated target: 2-amino-6-(5-[1,2-dithiolan-3-yl]-1-oxopentyl)aminohexanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N6-lipoyl-L-lysine
annotated property: has_exact_synonym
annotated target: MOD_RES N6-lipoyllysine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N6-lipoyl-L-lysine
annotated property: has_exact_synonym
annotated target: N-Lipoyl- (on Lysine)
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: N6-lipoyl-L-lysine
annotated property: has_exact_synonym
annotated target: N6-6,8-dithiooctanoyllysine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N6-lipoyl-L-lysine
annotated property: has_exact_synonym
annotated target: N6-lipoyl-L-lysine
has_synonym_type: Name from RESID

Axiom
annotated source: N6-lipoyl-L-lysine
annotated property: has_exact_synonym
annotated target: N6-lipoyllysine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N6-lipoyl-L-lysine
annotated property: has_exact_synonym
annotated target: N6LipLys
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: N6-lipoyl-L-lysine
annotated property: has_exact_synonym
annotated target: lipoylk
has_synonym_type: Short label from OMSSA

Axiom
annotated source: N6-lipoyl-L-lysine
annotated property: has_related_synonym
annotated target: Lipoyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: N6-lipoyl-L-lysine
annotated property: has_related_synonym
annotated target: Lipoyl
has_synonym_type: Description (full_name) from Unimod

N6-pyridoxal phosphate-L-lysine
type: Class
subclass of: MOD_00912
definition: A protein modification that effectively converts an L-lysine residue to N6-pyridoxal phosphate-L-lysine.
diff avg: 229.13
diff formula: C 8 H 8 N 1 O 5 P 1
diff mono: 229.014
formula: C 14 H 20 N 3 O 6 P 1
mass avg: 357.3
mass mono: 357.10898
origin: K
source: natural
database_cross_reference: Unimod:46
database_cross_reference: uniprot.ptm:PTM-0387
has_exact_synonym: (2S)-2-amino-6-[([3-hydroxy-2-methyl-5-phosphonooxymethylpyridin-4-yl]methylidene)amino]hexanoic acid
has_exact_synonym: MOD_RES N6-(pyridoxal phosphate)lysine
has_exact_synonym: N6-pyridoxal phosphate-L-lysine
has_exact_synonym: N6PydoxLys
has_exact_synonym: Pyridoxal phosphate (Schiff Base formed to lysine)
has_obo_namespace: PSI-MOD
has_related_synonym: Pyridoxal phosphate
has_related_synonym: PyridoxalPhosphate
id: MOD:00128
in_subset: PSI-MOD-slim
comment: From DeltaMass: Average Mass: 231

Axiom
annotated source: N6-pyridoxal phosphate-L-lysine
annotated property: definition
annotated target: A protein modification that effectively converts an L-lysine residue to N6-pyridoxal phosphate-L-lysine.
database_cross_reference: DeltaMass:0
database_cross_reference: PubMed:1544460
database_cross_reference: RESID:AA0119
database_cross_reference: Unimod:46#K

Axiom
annotated source: N6-pyridoxal phosphate-L-lysine
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-6-[([3-hydroxy-2-methyl-5-phosphonooxymethylpyridin-4-yl]methylidene)amino]hexanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N6-pyridoxal phosphate-L-lysine
annotated property: has_exact_synonym
annotated target: MOD_RES N6-(pyridoxal phosphate)lysine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N6-pyridoxal phosphate-L-lysine
annotated property: has_exact_synonym
annotated target: N6-pyridoxal phosphate-L-lysine
has_synonym_type: Name from RESID

Axiom
annotated source: N6-pyridoxal phosphate-L-lysine
annotated property: has_exact_synonym
annotated target: N6PydoxLys
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: N6-pyridoxal phosphate-L-lysine
annotated property: has_exact_synonym
annotated target: Pyridoxal phosphate (Schiff Base formed to lysine)
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: N6-pyridoxal phosphate-L-lysine
annotated property: has_related_synonym
annotated target: Pyridoxal phosphate
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: N6-pyridoxal phosphate-L-lysine
annotated property: has_related_synonym
annotated target: PyridoxalPhosphate
has_synonym_type: Agreed label from MS community

N6-retinylidene-L-lysine
type: Class
subclass of: MOD_00912
definition: A protein modification that effectively converts an L-lysine residue to N6-retinylidene-L-lysine, the adduct of retinal.
diff avg: 266.43
diff formula: C 20 H 26 N 0 O 0
diff mono: 266.20346
formula: C 26 H 38 N 2 O 1
mass avg: 394.6
mass mono: 394.2984
origin: K
source: natural
database_cross_reference: Unimod:380
database_cross_reference: uniprot.ptm:PTM-0388
has_exact_synonym: (2S)-2-amino-6-[(2E,4E,6E,8E)-3,7-dimethyl-9-(2,6,6-trimethylcyclohex-1-en-1-yl)-2,4,6,8-nonatetraenylidene]aminohexanoic acid
has_exact_synonym: MOD_RES N6-(retinylidene)lysine
has_exact_synonym: N6-retinal-L-lysine
has_exact_synonym: N6-retinyl-lysine
has_exact_synonym: N6-retinylidene-L-lysine
has_exact_synonym: N6RetalLys
has_obo_namespace: PSI-MOD
has_related_synonym: Retinylidene
has_related_synonym: retinal
id: MOD:00129
in_subset: PSI-MOD-slim

Axiom
annotated source: N6-retinylidene-L-lysine
annotated property: definition
annotated target: A protein modification that effectively converts an L-lysine residue to N6-retinylidene-L-lysine, the adduct of retinal.
database_cross_reference: PubMed:6794028
database_cross_reference: PubMed:6870827
database_cross_reference: RESID:AA0120
database_cross_reference: Unimod:380#K

Axiom
annotated source: N6-retinylidene-L-lysine
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-6-[(2E,4E,6E,8E)-3,7-dimethyl-9-(2,6,6-trimethylcyclohex-1-en-1-yl)-2,4,6,8-nonatetraenylidene]aminohexanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N6-retinylidene-L-lysine
annotated property: has_exact_synonym
annotated target: MOD_RES N6-(retinylidene)lysine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N6-retinylidene-L-lysine
annotated property: has_exact_synonym
annotated target: N6-retinal-L-lysine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N6-retinylidene-L-lysine
annotated property: has_exact_synonym
annotated target: N6-retinyl-lysine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N6-retinylidene-L-lysine
annotated property: has_exact_synonym
annotated target: N6-retinylidene-L-lysine
has_synonym_type: Name from RESID

Axiom
annotated source: N6-retinylidene-L-lysine
annotated property: has_exact_synonym
annotated target: N6RetalLys
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: N6-retinylidene-L-lysine
annotated property: has_related_synonym
annotated target: Retinylidene
has_synonym_type: Agreed label from MS community

Axiom
annotated source: N6-retinylidene-L-lysine
annotated property: has_related_synonym
annotated target: retinal
has_synonym_type: Description (full_name) from Unimod

L-allysine
type: Class
subclass of: MOD_00912
definition: A protein modification that effectively converts an L-lysine residue to L-allysine.
diff avg: -1.03
diff formula: C 0 H -3 N -1 O 1
diff mono: -1.031634
formula: C 6 H 9 N 1 O 2
mass avg: 127.14
mass mono: 127.06333
origin: K
source: natural
database_cross_reference: Unimod:352
database_cross_reference: uniprot.ptm:PTM-0059
has_exact_synonym: (2S)-2-amino-6-oxohexanoic acid
has_exact_synonym: 2-amino-5-formylvaleric acid
has_exact_synonym: 2-amino-adipic acid semialdahyde
has_exact_synonym: 2-aminoadipate 6-semialdehyde
has_exact_synonym: 5-formyl-norvaline
has_exact_synonym: 6-oxonorleucine
has_exact_synonym: AASA
has_exact_synonym: Allysine (from Lysine)
has_exact_synonym: L-allysine
has_exact_synonym: Lysal
has_exact_synonym: MOD_RES Allysine
has_exact_synonym: Oxidation of lysine (to aminoadipic semialdehyde)
has_exact_synonym: alpha-amino-adipic acid delta-semialdahyde
has_obo_namespace: PSI-MOD
has_related_synonym: Lys->Allysine
has_related_synonym: Lysine oxidation to aminoadipic semialdehyde
id: MOD:00130
in_subset: PSI-MOD-slim
comment: From DeltaMass: Average Mass: -1

Axiom
annotated source: L-allysine
annotated property: definition
annotated target: A protein modification that effectively converts an L-lysine residue to L-allysine.
database_cross_reference: ChEBI:17917
database_cross_reference: DeltaMass:0
database_cross_reference: PubMed:11120890
database_cross_reference: PubMed:11332453
database_cross_reference: PubMed:358196
database_cross_reference: PubMed:5337886
database_cross_reference: PubMed:5529814
database_cross_reference: RESID:AA0121
database_cross_reference: Unimod:352#K

Axiom
annotated source: L-allysine
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-6-oxohexanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-allysine
annotated property: has_exact_synonym
annotated target: 2-amino-5-formylvaleric acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-allysine
annotated property: has_exact_synonym
annotated target: 2-amino-adipic acid semialdahyde
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-allysine
annotated property: has_exact_synonym
annotated target: 2-aminoadipate 6-semialdehyde
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-allysine
annotated property: has_exact_synonym
annotated target: 5-formyl-norvaline
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-allysine
annotated property: has_exact_synonym
annotated target: 6-oxonorleucine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-allysine
annotated property: has_exact_synonym
annotated target: AASA
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-allysine
annotated property: has_exact_synonym
annotated target: Allysine (from Lysine)
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: L-allysine
annotated property: has_exact_synonym
annotated target: L-allysine
has_synonym_type: Name from RESID

Axiom
annotated source: L-allysine
annotated property: has_exact_synonym
annotated target: Lysal
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-allysine
annotated property: has_exact_synonym
annotated target: MOD_RES Allysine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-allysine
annotated property: has_exact_synonym
annotated target: Oxidation of lysine (to aminoadipic semialdehyde)
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: L-allysine
annotated property: has_exact_synonym
annotated target: alpha-amino-adipic acid delta-semialdahyde
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-allysine
annotated property: has_related_synonym
annotated target: Lys->Allysine
has_synonym_type: Agreed label from MS community

Axiom
annotated source: L-allysine
annotated property: has_related_synonym
annotated target: Lysine oxidation to aminoadipic semialdehyde
has_synonym_type: Description (full_name) from Unimod

L-2-aminoadipic acid
type: Class
subclass of: MOD_00912
definition: A protein modification that effectively converts an L-lysine residue to L-2-aminoadipic acid.
diff avg: 14.97
diff formula: C 0 H -3 N -1 O 2
diff mono: 14.96328
formula: C 6 H 9 N 1 O 3
mass avg: 143.14
mass mono: 143.05824
origin: K
source: natural
database_cross_reference: Unimod:381
has_exact_synonym: (2S)-2-aminohexanedioic acid
has_exact_synonym: 2-amino-1,4-butanedicarboxylic acid
has_exact_synonym: L-2-aminoadipic acid
has_exact_synonym: L-alpha-aminoadipic acid
has_exact_synonym: Lysoic
has_exact_synonym: Oxidation of lysine (to aminoadipic acid)
has_obo_namespace: PSI-MOD
has_related_synonym: Lys->AminoadipicAcid
has_related_synonym: alpha-amino adipic acid
id: MOD:00131
in_subset: PSI-MOD-slim
comment: From DeltaMass: References:Amici A, Levine, RL, Tsai, L, and Stadtman, ER: Conversion of amino acid residues in proteins and amino acid homopolymers to carbonyl derivatives by metal-catalyzed oxidation reactions. Journal of Biological Chemistry 264: 3341-3346 1989.Requena JR, Chao CC, Levine RL, and Stadtman ER: Glutamic and aminoadipic semialdehydes are the main carbonyl products of metal-catalyzed oxidation of proteins. Proceedings of the National Academy of Sciences USA 98: 69-74 2001. Notes:Expected reaction following oxidation of lysine to aminoadipic semialdehyde. Not proven experimentally but deduced by reference to the similar known reaction of oxidation of Arg to Glu via the semialdehyde. [This has been observed as a natural modification, see RESID:AA0122. JSG]

Axiom
annotated source: L-2-aminoadipic acid
annotated property: definition
annotated target: A protein modification that effectively converts an L-lysine residue to L-2-aminoadipic acid.
database_cross_reference: DeltaMass:353
database_cross_reference: PubMed:336041
database_cross_reference: PubMed:358196
database_cross_reference: PubMed:7419498
database_cross_reference: RESID:AA0122
database_cross_reference: Unimod:381#K

Axiom
annotated source: L-2-aminoadipic acid
annotated property: has_exact_synonym
annotated target: (2S)-2-aminohexanedioic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-2-aminoadipic acid
annotated property: has_exact_synonym
annotated target: 2-amino-1,4-butanedicarboxylic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-2-aminoadipic acid
annotated property: has_exact_synonym
annotated target: L-2-aminoadipic acid
has_synonym_type: Name from RESID

Axiom
annotated source: L-2-aminoadipic acid
annotated property: has_exact_synonym
annotated target: L-alpha-aminoadipic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-2-aminoadipic acid
annotated property: has_exact_synonym
annotated target: Lysoic
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-2-aminoadipic acid
annotated property: has_exact_synonym
annotated target: Oxidation of lysine (to aminoadipic acid)
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: L-2-aminoadipic acid
annotated property: has_related_synonym
annotated target: Lys->AminoadipicAcid
has_synonym_type: Agreed label from MS community

Axiom
annotated source: L-2-aminoadipic acid
annotated property: has_related_synonym
annotated target: alpha-amino adipic acid
has_synonym_type: Description (full_name) from Unimod

L-lysinoalanine (Lys-Ser)
type: Class
subclass of: MOD_00954
subclass of: MOD_01853
subclass of: MOD_02051
subclass of: MOD_02055
definition: A protein modification that effectively crosslinks an L-serine residue and an L-lysine residue to release water and form 2-amino-6-(2-amino-2-carboxyethylamino)hexanoic acid.
diff avg: -18.02
diff formula: C 0 H -2 N 0 O -1
diff mono: -18.010565
formula: C 9 H 15 N 3 O 2
mass avg: 197.24
mass mono: 197.11642
origin: K, S
source: natural
database_cross_reference: uniprot.ptm:PTM-0172
has_exact_synonym: (2R,9S)-lysinoalanine
has_exact_synonym: (2S)-2-amino-6-([(2R)-2-amino-2-carboxyethyl]amino)hexanoic acid
has_exact_synonym: CROSSLNK Lysinoalanine (Ser-Lys)
has_exact_synonym: L-lysinoalanine
has_exact_synonym: LAL
has_exact_synonym: Lysinoalanine (from Cysteine)
has_exact_synonym: N-epsilon-(2-amino-2-carboxyethyl)-L-lysine
has_exact_synonym: N6-(2-amino-2-carboxyethyl)-L-lysine
has_exact_synonym: XLNK-N6Lys-3Dha(Ser)
has_exact_synonym: alaninolysine
has_obo_namespace: PSI-MOD
id: MOD:00132
comment: Cross-link 2. This entry is for the crosslink of peptidyl serine and peptidyl lysine. For the modification of peptidyl lysine by a free serine see MOD:01838. From DeltaMass: Average Mass: -34.

Axiom
annotated source: L-lysinoalanine (Lys-Ser)
annotated property: definition
annotated target: A protein modification that effectively crosslinks an L-serine residue and an L-lysine residue to release water and form 2-amino-6-(2-amino-2-carboxyethylamino)hexanoic acid.
database_cross_reference: DeltaMass:0
database_cross_reference: PubMed:2544544
database_cross_reference: RESID:AA0123#KSX

Axiom
annotated source: L-lysinoalanine (Lys-Ser)
annotated property: has_exact_synonym
annotated target: (2R,9S)-lysinoalanine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-lysinoalanine (Lys-Ser)
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-6-([(2R)-2-amino-2-carboxyethyl]amino)hexanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-lysinoalanine (Lys-Ser)
annotated property: has_exact_synonym
annotated target: CROSSLNK Lysinoalanine (Ser-Lys)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-lysinoalanine (Lys-Ser)
annotated property: has_exact_synonym
annotated target: L-lysinoalanine
has_synonym_type: Name from RESID

Axiom
annotated source: L-lysinoalanine (Lys-Ser)
annotated property: has_exact_synonym
annotated target: LAL
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-lysinoalanine (Lys-Ser)
annotated property: has_exact_synonym
annotated target: Lysinoalanine (from Cysteine)
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: L-lysinoalanine (Lys-Ser)
annotated property: has_exact_synonym
annotated target: N-epsilon-(2-amino-2-carboxyethyl)-L-lysine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-lysinoalanine (Lys-Ser)
annotated property: has_exact_synonym
annotated target: N6-(2-amino-2-carboxyethyl)-L-lysine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-lysinoalanine (Lys-Ser)
annotated property: has_exact_synonym
annotated target: XLNK-N6Lys-3Dha(Ser)
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-lysinoalanine (Lys-Ser)
annotated property: has_exact_synonym
annotated target: alaninolysine
has_synonym_type: Alternate name from RESID

N6-(L-isoglutamyl)-L-lysine (Gln)
type: Class
subclass of: MOD_00946
subclass of: MOD_01630
subclass of: MOD_02046
definition: A protein modification that effectively crosslinks an L-glutamine residue and an L-lysine residue by an isopeptide bond with the formation of N6-(L-isoglutamyl)-L-lysine and the release of ammonia.
diff avg: -17.03
diff formula: C 0 H -3 N -1 O 0
diff mono: -17.026548
formula: C 11 H 17 N 3 O 3
mass avg: 239.27
mass mono: 239.12698
origin: K, Q
source: natural
database_cross_reference: uniprot.ptm:PTM-0158
has_exact_synonym: (2S)-2-amino-6-([(4S)-4-amino-4-carboxybutanoyl]amino)hexanoic acid
has_exact_synonym: 2-azanyl-6-([4-azanyl-4-carboxybutanoyl]azanyl)hexanoic acid
has_exact_synonym: 5-glutamyl N6-lysine
has_exact_synonym: CROSSLNK Isoglutamyl lysine isopeptide (Lys-Gln)
has_exact_synonym: N alpha -(gamma-Glutamyl)-lysine
has_exact_synonym: N(epsilon)-(gamma-glutamyl)lysine
has_exact_synonym: N6-(L-isoglutamyl)-L-lysine
has_exact_synonym: XLNK-N6Lys-5Glu(Gln)
has_obo_namespace: PSI-MOD
id: MOD:00133
in_subset: PSI-MOD-slim
comment: Cross-link 2.

Axiom
annotated source: N6-(L-isoglutamyl)-L-lysine (Gln)
annotated property: definition
annotated target: A protein modification that effectively crosslinks an L-glutamine residue and an L-lysine residue by an isopeptide bond with the formation of N6-(L-isoglutamyl)-L-lysine and the release of ammonia.
database_cross_reference: ChEBI:21863
database_cross_reference: DeltaMass:0
database_cross_reference: PubMed:2461365
database_cross_reference: PubMed:5637041
database_cross_reference: PubMed:5656070
database_cross_reference: PubMed:8598899
database_cross_reference: RESID:AA0124#GLN

Axiom
annotated source: N6-(L-isoglutamyl)-L-lysine (Gln)
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-6-([(4S)-4-amino-4-carboxybutanoyl]amino)hexanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N6-(L-isoglutamyl)-L-lysine (Gln)
annotated property: has_exact_synonym
annotated target: 2-azanyl-6-([4-azanyl-4-carboxybutanoyl]azanyl)hexanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N6-(L-isoglutamyl)-L-lysine (Gln)
annotated property: has_exact_synonym
annotated target: 5-glutamyl N6-lysine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N6-(L-isoglutamyl)-L-lysine (Gln)
annotated property: has_exact_synonym
annotated target: CROSSLNK Isoglutamyl lysine isopeptide (Lys-Gln)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N6-(L-isoglutamyl)-L-lysine (Gln)
annotated property: has_exact_synonym
annotated target: N alpha -(gamma-Glutamyl)-lysine
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: N6-(L-isoglutamyl)-L-lysine (Gln)
annotated property: has_exact_synonym
annotated target: N(epsilon)-(gamma-glutamyl)lysine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N6-(L-isoglutamyl)-L-lysine (Gln)
annotated property: has_exact_synonym
annotated target: N6-(L-isoglutamyl)-L-lysine
has_synonym_type: Name from RESID

Axiom
annotated source: N6-(L-isoglutamyl)-L-lysine (Gln)
annotated property: has_exact_synonym
annotated target: XLNK-N6Lys-5Glu(Gln)
has_synonym_type: Short label curated by PSI-MOD

N6-glycyl-L-lysine
type: Class
subclass of: MOD_00688
subclass of: MOD_00954
subclass of: MOD_01875
subclass of: MOD_02047
subclass of: MOD_02051
definition: A protein modification that effectively crosslinks an L-lysine residue and a glycine residue by an isopeptide bond to form N6-glycyl-L-lysine.
diff avg: -18.02
diff formula: C 0 H -2 N 0 O -1
diff mono: -18.010565
formula: C 8 H 14 N 3 O 2
mass avg: 184.22
mass mono: 184.1086
origin: G, K
source: natural
term spec: C-term
database_cross_reference: uniprot.ptm:PTM-0134
has_exact_synonym: (2S)-2-amino-6-[(aminoacetyl)amino]hexanoic acid
has_exact_synonym: CROSSLNK Glycyl lysine isopeptide (Gly-Lys) (interchain with K-...)
has_exact_synonym: CROSSLNK Glycyl lysine isopeptide (Lys-Gly) (interchain with G-...)
has_exact_synonym: N6-(glycyl)-L-lysine
has_exact_synonym: N6-glycyllysine
has_exact_synonym: XLNK-N6Lys-1Gly
has_obo_namespace: PSI-MOD
id: MOD:00134
in_subset: PSI-MOD-slim
comment: Cross-link 2; this is the common crosslink structure formed by ubiquitin, SUMO, and similar proteins.

Axiom
annotated source: N6-glycyl-L-lysine
annotated property: definition
annotated target: A protein modification that effectively crosslinks an L-lysine residue and a glycine residue by an isopeptide bond to form N6-glycyl-L-lysine.
database_cross_reference: ChEBI:21885
database_cross_reference: RESID:AA0125

Axiom
annotated source: N6-glycyl-L-lysine
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-6-[(aminoacetyl)amino]hexanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N6-glycyl-L-lysine
annotated property: has_exact_synonym
annotated target: CROSSLNK Glycyl lysine isopeptide (Gly-Lys) (interchain with K-...)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N6-glycyl-L-lysine
annotated property: has_exact_synonym
annotated target: CROSSLNK Glycyl lysine isopeptide (Lys-Gly) (interchain with G-...)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N6-glycyl-L-lysine
annotated property: has_exact_synonym
annotated target: N6-(glycyl)-L-lysine
has_synonym_type: Name from RESID

Axiom
annotated source: N6-glycyl-L-lysine
annotated property: has_exact_synonym
annotated target: N6-glycyllysine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N6-glycyl-L-lysine
annotated property: has_exact_synonym
annotated target: XLNK-N6Lys-1Gly
has_synonym_type: Short label curated by PSI-MOD

N-(L-isoaspartyl)-glycine (Asn)
type: Class
subclass of: MOD_00946
subclass of: MOD_01928
subclass of: MOD_02042
definition: A protein modification that effectively crosslinks an L-asparagine residue and a glycine residue by an isopeptide bond with formation of N-(L-isoaspartyl)glycine and the release of ammonia.
diff avg: -17.03
diff formula: C 0 H -3 N -1 O 0
diff mono: -17.026548
formula: C 6 H 7 N 2 O 3
mass avg: 155.13
mass mono: 155.04567
origin: G, N
source: natural
term spec: N-term
database_cross_reference: uniprot.ptm:PTM-0489
has_exact_synonym: (2S)-2-amino-4-(carboxymethyl)amino-4-oxobutanoic acid
has_exact_synonym: 2-amino-N4-(carboxymethyl)-butanediamic acid
has_exact_synonym: CROSSLNK Isoaspartyl glycine isopeptide (Asn-Gly)
has_exact_synonym: CROSSLNK Isoaspartyl glycine isopeptide (Gly-Asn)
has_exact_synonym: N-(L-isoaspartyl)-glycine
has_exact_synonym: N-beta-aspartylglycine
has_exact_synonym: N4-(carboxymethyl)-asparagine
has_exact_synonym: XLNK-4Asp-NGly(Asn)
has_exact_synonym: isoaspartyl glycine
has_obo_namespace: PSI-MOD
id: MOD:00135
comment: Cross-link 2.

Axiom
annotated source: N-(L-isoaspartyl)-glycine (Asn)
annotated property: definition
annotated target: A protein modification that effectively crosslinks an L-asparagine residue and a glycine residue by an isopeptide bond with formation of N-(L-isoaspartyl)glycine and the release of ammonia.
database_cross_reference: ChEBI:21479
database_cross_reference: PubMed:1826288
database_cross_reference: RESID:AA0126

Axiom
annotated source: N-(L-isoaspartyl)-glycine (Asn)
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-4-(carboxymethyl)amino-4-oxobutanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N-(L-isoaspartyl)-glycine (Asn)
annotated property: has_exact_synonym
annotated target: 2-amino-N4-(carboxymethyl)-butanediamic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-(L-isoaspartyl)-glycine (Asn)
annotated property: has_exact_synonym
annotated target: CROSSLNK Isoaspartyl glycine isopeptide (Asn-Gly)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N-(L-isoaspartyl)-glycine (Asn)
annotated property: has_exact_synonym
annotated target: CROSSLNK Isoaspartyl glycine isopeptide (Gly-Asn)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N-(L-isoaspartyl)-glycine (Asn)
annotated property: has_exact_synonym
annotated target: N-(L-isoaspartyl)-glycine
has_synonym_type: Name from RESID

Axiom
annotated source: N-(L-isoaspartyl)-glycine (Asn)
annotated property: has_exact_synonym
annotated target: N-beta-aspartylglycine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-(L-isoaspartyl)-glycine (Asn)
annotated property: has_exact_synonym
annotated target: N4-(carboxymethyl)-asparagine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-(L-isoaspartyl)-glycine (Asn)
annotated property: has_exact_synonym
annotated target: XLNK-4Asp-NGly(Asn)
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: N-(L-isoaspartyl)-glycine (Asn)
annotated property: has_exact_synonym
annotated target: isoaspartyl glycine
has_synonym_type: Alternate name from RESID

pyruvic acid (Cys)
type: Class
subclass of: MOD_00905
subclass of: MOD_01154
definition: A protein modification that effectively converts an L-cysteine residue to pyruvic acid.
diff avg: -33.09
diff formula: C 0 H -3 N -1 O 1 S -1
diff mono: -33.003704
formula: C 3 H 3 O 2
mass avg: 71.06
mass mono: 71.013306
origin: C
source: natural
term spec: N-term
database_cross_reference: Unimod:382
database_cross_reference: uniprot.ptm:PTM-0265
has_exact_synonym: 2-oxopropanoic acid
has_exact_synonym: MOD_RES Pyruvic acid (Cys)
has_exact_synonym: Pyruv(Cys)
has_exact_synonym: pyruvic acid
has_obo_namespace: PSI-MOD
id: MOD:00136
in_subset: PSI-MOD-slim

Axiom
annotated source: pyruvic acid (Cys)
annotated property: definition
annotated target: A protein modification that effectively converts an L-cysteine residue to pyruvic acid.
database_cross_reference: PubMed:10085076
database_cross_reference: PubMed:3042771
database_cross_reference: PubMed:8464063
database_cross_reference: RESID:AA0127#CYS
database_cross_reference: Unimod:382

Axiom
annotated source: pyruvic acid (Cys)
annotated property: has_exact_synonym
annotated target: 2-oxopropanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: pyruvic acid (Cys)
annotated property: has_exact_synonym
annotated target: MOD_RES Pyruvic acid (Cys)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: pyruvic acid (Cys)
annotated property: has_exact_synonym
annotated target: Pyruv(Cys)
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: pyruvic acid (Cys)
annotated property: has_exact_synonym
annotated target: pyruvic acid
has_synonym_type: Name from RESID

L-3-phenyllactic acid
type: Class
subclass of: MOD_00914
definition: A protein modification that effectively converts an L-phenylalanine residue into L-3-phenyllactic acid.
diff avg: 0.98
diff formula: C 0 H -1 N -1 O 1
diff mono: 0.984016
formula: C 9 H 9 O 2
mass avg: 149.17
mass mono: 149.06026
origin: F
term spec: N-term
database_cross_reference: Unimod:7
database_cross_reference: uniprot.ptm:PTM-0035
has_exact_synonym: (2S)-2-hydroxy-3-phenylpropanoic acid
has_exact_synonym: L-3-phenyllactic acid
has_exact_synonym: MOD_RES 3-phenyllactic acid
has_obo_namespace: PSI-MOD
has_related_synonym: Deamidated
has_related_synonym: Deamidation
id: MOD:00137
comment: This modification is not the result of deamidation, instead the alpha amino group is replaced with an hydroxyl group.

Axiom
annotated source: L-3-phenyllactic acid
annotated property: definition
annotated target: A protein modification that effectively converts an L-phenylalanine residue into L-3-phenyllactic acid.
database_cross_reference: PubMed:1973541
database_cross_reference: RESID:AA0128
database_cross_reference: Unimod:7#F

Axiom
annotated source: L-3-phenyllactic acid
annotated property: has_exact_synonym
annotated target: (2S)-2-hydroxy-3-phenylpropanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-3-phenyllactic acid
annotated property: has_exact_synonym
annotated target: L-3-phenyllactic acid
has_synonym_type: Name from RESID

Axiom
annotated source: L-3-phenyllactic acid
annotated property: has_exact_synonym
annotated target: MOD_RES 3-phenyllactic acid
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-3-phenyllactic acid
annotated property: has_related_synonym
annotated target: Deamidated
has_synonym_type: Interim label from Unimod

Axiom
annotated source: L-3-phenyllactic acid
annotated property: has_related_synonym
annotated target: Deamidation
has_synonym_type: Description (full_name) from Unimod

2-oxobutanoic acid
type: Class
subclass of: MOD_00917
subclass of: MOD_01160
definition: A protein modification that effectively converts an L-threonine residue into 2-oxobutanoic acid.
diff avg: -17.03
diff formula: C 0 H -3 N -1 O 0
diff mono: -17.026548
formula: C 4 H 5 O 2
mass avg: 85.08
mass mono: 85.02895
origin: T
term spec: N-term
database_cross_reference: Unimod:385
database_cross_reference: uniprot.ptm:PTM-0017
has_exact_synonym: 2-ketobutyric acid
has_exact_synonym: 2-oxobutanoic acid
has_exact_synonym: 2-oxobutyric acid
has_exact_synonym: MOD_RES 2-oxobutanoic acid
has_obo_namespace: PSI-MOD
has_related_synonym: Ammonia-loss
has_related_synonym: Loss of ammonia
id: MOD:00138

Axiom
annotated source: 2-oxobutanoic acid
annotated property: definition
annotated target: A protein modification that effectively converts an L-threonine residue into 2-oxobutanoic acid.
database_cross_reference: ChEBI:149508
database_cross_reference: PubMed:15023056
database_cross_reference: PubMed:1680314
database_cross_reference: PubMed:2253617
database_cross_reference: PubMed:2764678
database_cross_reference: RESID:AA0129
database_cross_reference: Unimod:385#T

Axiom
annotated source: 2-oxobutanoic acid
annotated property: has_exact_synonym
annotated target: 2-ketobutyric acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 2-oxobutanoic acid
annotated property: has_exact_synonym
annotated target: 2-oxobutanoic acid
has_synonym_type: Name from RESID

Axiom
annotated source: 2-oxobutanoic acid
annotated property: has_exact_synonym
annotated target: 2-oxobutanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: 2-oxobutanoic acid
annotated property: has_exact_synonym
annotated target: 2-oxobutyric acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 2-oxobutanoic acid
annotated property: has_exact_synonym
annotated target: MOD_RES 2-oxobutanoic acid
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: 2-oxobutanoic acid
annotated property: has_related_synonym
annotated target: Ammonia-loss
has_synonym_type: Interim label from Unimod

Axiom
annotated source: 2-oxobutanoic acid
annotated property: has_related_synonym
annotated target: Loss of ammonia
has_synonym_type: Description (full_name) from Unimod

N2-succinyl-L-tryptophan
type: Class
subclass of: MOD_00918
subclass of: MOD_02081
definition: A protein modification that effectively converts an L-tryptophan residue to N2-succinyl-L-tryptophan.
diff avg: 100.07
diff formula: C 4 H 4 N 0 O 3
diff mono: 100.016045
formula: C 15 H 15 N 2 O 4
mass avg: 287.29
mass mono: 287.10318
origin: W
source: natural
term spec: N-term
database_cross_reference: Unimod:64
database_cross_reference: uniprot.ptm:PTM-0181
has_exact_synonym: (2S)-2-(3-carboxypropanoyl)amino-3-(1H-indol-3-yl)propanoic acid
has_exact_synonym: (2S)-2-amino-(6,7-dihydro-6,7-dioxo-1H-indole)-3-propanoic acid
has_exact_synonym: MOD_RES N2-succinyltryptophan
has_exact_synonym: N2-succinyl-L-tryptophan
has_obo_namespace: PSI-MOD
has_related_synonym: Succinic anhydride labeling reagent light form (N-term)
has_related_synonym: Succinyl
id: MOD:00139

Axiom
annotated source: N2-succinyl-L-tryptophan
annotated property: definition
annotated target: A protein modification that effectively converts an L-tryptophan residue to N2-succinyl-L-tryptophan.
database_cross_reference: PubMed:11857757
database_cross_reference: PubMed:12175151
database_cross_reference: PubMed:8471040
database_cross_reference: RESID:AA0130
database_cross_reference: Unimod:64#N-term

Axiom
annotated source: N2-succinyl-L-tryptophan
annotated property: has_exact_synonym
annotated target: (2S)-2-(3-carboxypropanoyl)amino-3-(1H-indol-3-yl)propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N2-succinyl-L-tryptophan
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-(6,7-dihydro-6,7-dioxo-1H-indole)-3-propanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N2-succinyl-L-tryptophan
annotated property: has_exact_synonym
annotated target: MOD_RES N2-succinyltryptophan
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N2-succinyl-L-tryptophan
annotated property: has_exact_synonym
annotated target: N2-succinyl-L-tryptophan
has_synonym_type: Name from RESID

Axiom
annotated source: N2-succinyl-L-tryptophan
annotated property: has_related_synonym
annotated target: Succinic anhydride labeling reagent light form (N-term)
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: N2-succinyl-L-tryptophan
annotated property: has_related_synonym
annotated target: Succinyl
has_synonym_type: Agreed label from MS community

S-phycocyanobilin-L-cysteine
type: Class
subclass of: MOD_00700
subclass of: MOD_00905
definition: A protein modification that effectively results from forming an adduct between a cysteine residue and the tetrapyrrole compound phycocyanobilin.
diff avg: 586.69
diff formula: C 33 H 38 N 4 O 6 S 0
diff mono: 586.2791
formula: C 36 H 43 N 5 O 7 S 1
mass avg: 689.83
mass mono: 689.2883
origin: C
source: natural
database_cross_reference: Unimod:387
has_exact_synonym: (2R,3R)-3-[(1R)-1-(((2R)-2-amino-2-carboxy)ethylsulfanyl)ethyl]-18-ethyl-1,2,3,19,21,22,24-heptahydro-2,7,13,17-tetramethyl-1,19-dioxo-(21H,22H,24H)-bilin-8,12-dipropanoic acid
has_exact_synonym: (2R,3R)-3-[(1R)-1-(((2R)-2-amino-2-carboxy)ethylsulfanyl)ethyl]-8,12-bis(2-carboxyethyl)-18-ethyl-2,7,13,17-tetramethyl-1,2,3,19,21,22,24-heptahydrobilin-1,19(21H,22H,24H)-dione
has_exact_synonym: BINDING Phycocyanobilin chromophore (covalent; via 1 link)
has_exact_synonym: PCB
has_exact_synonym: S-Phycocyanobilin (on Cysteine)
has_exact_synonym: S-phycocyanobilin-L-cysteine
has_exact_synonym: phycobilin cysteine
has_exact_synonym: phycocyanobilin cysteine adduct
has_obo_namespace: PSI-MOD
has_related_synonym: Phycocyanobilin
has_related_synonym: phycocyanobilin
id: MOD:00140
comment: From DeltaMass: Average Mass: 587.

Axiom
annotated source: S-phycocyanobilin-L-cysteine
annotated property: definition
annotated target: A protein modification that effectively results from forming an adduct between a cysteine residue and the tetrapyrrole compound phycocyanobilin.
database_cross_reference: ChEBI:15617
database_cross_reference: DeltaMass:0
database_cross_reference: PubMed:16644722
database_cross_reference: PubMed:3208761
database_cross_reference: PubMed:3838747
database_cross_reference: PubMed:7918400
database_cross_reference: RESID:AA0131
database_cross_reference: Unimod:387#C

Axiom
annotated source: S-phycocyanobilin-L-cysteine
annotated property: has_exact_synonym
annotated target: (2R,3R)-3-[(1R)-1-(((2R)-2-amino-2-carboxy)ethylsulfanyl)ethyl]-18-ethyl-1,2,3,19,21,22,24-heptahydro-2,7,13,17-tetramethyl-1,19-dioxo-(21H,22H,24H)-bilin-8,12-dipropanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-phycocyanobilin-L-cysteine
annotated property: has_exact_synonym
annotated target: (2R,3R)-3-[(1R)-1-(((2R)-2-amino-2-carboxy)ethylsulfanyl)ethyl]-8,12-bis(2-carboxyethyl)-18-ethyl-2,7,13,17-tetramethyl-1,2,3,19,21,22,24-heptahydrobilin-1,19(21H,22H,24H)-dione
has_synonym_type: Systematic name from RESID

Axiom
annotated source: S-phycocyanobilin-L-cysteine
annotated property: has_exact_synonym
annotated target: BINDING Phycocyanobilin chromophore (covalent; via 1 link)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: S-phycocyanobilin-L-cysteine
annotated property: has_exact_synonym
annotated target: PCB
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-phycocyanobilin-L-cysteine
annotated property: has_exact_synonym
annotated target: S-Phycocyanobilin (on Cysteine)
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: S-phycocyanobilin-L-cysteine
annotated property: has_exact_synonym
annotated target: S-phycocyanobilin-L-cysteine
has_synonym_type: Name from RESID

Axiom
annotated source: S-phycocyanobilin-L-cysteine
annotated property: has_exact_synonym
annotated target: phycobilin cysteine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-phycocyanobilin-L-cysteine
annotated property: has_exact_synonym
annotated target: phycocyanobilin cysteine adduct
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-phycocyanobilin-L-cysteine
annotated property: has_related_synonym
annotated target: Phycocyanobilin
has_synonym_type: Agreed label from MS community

Axiom
annotated source: S-phycocyanobilin-L-cysteine
annotated property: has_related_synonym
annotated target: phycocyanobilin
has_synonym_type: Description (full_name) from Unimod

S-phycoerythrobilin-L-cysteine
type: Class
subclass of: MOD_00700
subclass of: MOD_00905
definition: A protein modification that effectively results from forming an adduct between a cysteine residue and the tetrapyrrole compound phycoerythrobilin.
diff avg: 588.7
diff formula: C 33 H 40 N 4 O 6 S 0
diff mono: 588.2948
formula: C 36 H 45 N 5 O 7 S 1
mass avg: 691.84
mass mono: 691.30396
origin: C
source: natural
database_cross_reference: Unimod:388
has_exact_synonym: (2S,3R,16R)-18-ethenyl-3-[(1R)-1-(((2R)-2-amino-2-carboxy)ethylsulfanyl)ethyl]-8,12-bis(2-carboxyethyl)-2,7,13,17-tetramethyl-2,3,15,16-tetrahydrobilin-1,19(21H,22H,24H)-dione
has_exact_synonym: 18-ethenyl-3-[1-((2-amino-2-carboxy)ethylsulfanyl)ethyl]-2,3,15,16-tetrahydro-2,7,13,17-tetramethyl-1,19-dioxo-(21H,22H,24H)-bilin-8,12-dipropanoic acid
has_exact_synonym: BINDING Phycoerythrobilin chromophore (covalent; via 1 link)
has_exact_synonym: PEB
has_exact_synonym: S-phycoerythrobilin-L-cysteine
has_exact_synonym: phycoerythrobilin cysteine adduct
has_obo_namespace: PSI-MOD
has_related_synonym: Phycoerythrobilin
has_related_synonym: phycoerythrobilin
id: MOD:00141

Axiom
annotated source: S-phycoerythrobilin-L-cysteine
annotated property: definition
annotated target: A protein modification that effectively results from forming an adduct between a cysteine residue and the tetrapyrrole compound phycoerythrobilin.
database_cross_reference: ChEBI:15618
database_cross_reference: PubMed:14588022
database_cross_reference: PubMed:3208761
database_cross_reference: PubMed:3838747
database_cross_reference: PubMed:8876649
database_cross_reference: RESID:AA0132
database_cross_reference: Unimod:388#C

Axiom
annotated source: S-phycoerythrobilin-L-cysteine
annotated property: has_exact_synonym
annotated target: (2S,3R,16R)-18-ethenyl-3-[(1R)-1-(((2R)-2-amino-2-carboxy)ethylsulfanyl)ethyl]-8,12-bis(2-carboxyethyl)-2,7,13,17-tetramethyl-2,3,15,16-tetrahydrobilin-1,19(21H,22H,24H)-dione
has_synonym_type: Systematic name from RESID

Axiom
annotated source: S-phycoerythrobilin-L-cysteine
annotated property: has_exact_synonym
annotated target: 18-ethenyl-3-[1-((2-amino-2-carboxy)ethylsulfanyl)ethyl]-2,3,15,16-tetrahydro-2,7,13,17-tetramethyl-1,19-dioxo-(21H,22H,24H)-bilin-8,12-dipropanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-phycoerythrobilin-L-cysteine
annotated property: has_exact_synonym
annotated target: BINDING Phycoerythrobilin chromophore (covalent; via 1 link)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: S-phycoerythrobilin-L-cysteine
annotated property: has_exact_synonym
annotated target: PEB
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-phycoerythrobilin-L-cysteine
annotated property: has_exact_synonym
annotated target: S-phycoerythrobilin-L-cysteine
has_synonym_type: Name from RESID

Axiom
annotated source: S-phycoerythrobilin-L-cysteine
annotated property: has_exact_synonym
annotated target: phycoerythrobilin cysteine adduct
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-phycoerythrobilin-L-cysteine
annotated property: has_related_synonym
annotated target: Phycoerythrobilin
has_synonym_type: Agreed label from MS community

Axiom
annotated source: S-phycoerythrobilin-L-cysteine
annotated property: has_related_synonym
annotated target: phycoerythrobilin
has_synonym_type: Description (full_name) from Unimod

S-phytochromobilin-L-cysteine
type: Class
subclass of: MOD_00700
subclass of: MOD_00905
definition: A protein modification that effectively results from forming an adduct between a cysteine residue and the tetrapyrrole compound phytochromobilin.
diff avg: 584.67
diff formula: C 33 H 36 N 4 O 6 S 0
diff mono: 584.2635
formula: C 36 H 41 N 5 O 7 S 1
mass avg: 687.81
mass mono: 687.27264
origin: C
source: natural
database_cross_reference: Unimod:389
has_exact_synonym: (2R,3R)-3-[(1R)-1-(((2R)-2-amino-2-carboxy)ethylsulfanyl)ethyl]-8,12-bis(2-carboxyethyl)-18-ethyl-2,7,13,17-tetramethyl-1,2,3,19,21,22,24-heptahydrobilin-1,19(21H,22H,24H)-dione
has_exact_synonym: 18-ethenyl-3-[1-((2-amino-2-carboxy)ethylsulfanyl)ethyl]-1,2,3,19,22,24-hexahydro-2,7,13,17-tetramethyl-1,19-dioxo-21H-biline-8,12-dipropanoic acid
has_exact_synonym: BINDING Phytochromobilin chromophore (covalent; via 1 link)
has_exact_synonym: S-phytochromobilin-L-cysteine
has_exact_synonym: phytochrome chromophore
has_exact_synonym: phytochromobilin cysteine adduct
has_obo_namespace: PSI-MOD
has_related_synonym: Phytochromobilin
has_related_synonym: phytochromobilin
id: MOD:00142

Axiom
annotated source: S-phytochromobilin-L-cysteine
annotated property: definition
annotated target: A protein modification that effectively results from forming an adduct between a cysteine residue and the tetrapyrrole compound phytochromobilin.
database_cross_reference: ChEBI:15619
database_cross_reference: PubMed:1634523
database_cross_reference: PubMed:16593380
database_cross_reference: PubMed:3208761
database_cross_reference: PubMed:7918400
database_cross_reference: RESID:AA0133
database_cross_reference: Unimod:389#C

Axiom
annotated source: S-phytochromobilin-L-cysteine
annotated property: has_exact_synonym
annotated target: (2R,3R)-3-[(1R)-1-(((2R)-2-amino-2-carboxy)ethylsulfanyl)ethyl]-8,12-bis(2-carboxyethyl)-18-ethyl-2,7,13,17-tetramethyl-1,2,3,19,21,22,24-heptahydrobilin-1,19(21H,22H,24H)-dione
has_synonym_type: Systematic name from RESID

Axiom
annotated source: S-phytochromobilin-L-cysteine
annotated property: has_exact_synonym
annotated target: 18-ethenyl-3-[1-((2-amino-2-carboxy)ethylsulfanyl)ethyl]-1,2,3,19,22,24-hexahydro-2,7,13,17-tetramethyl-1,19-dioxo-21H-biline-8,12-dipropanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-phytochromobilin-L-cysteine
annotated property: has_exact_synonym
annotated target: BINDING Phytochromobilin chromophore (covalent; via 1 link)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: S-phytochromobilin-L-cysteine
annotated property: has_exact_synonym
annotated target: S-phytochromobilin-L-cysteine
has_synonym_type: Name from RESID

Axiom
annotated source: S-phytochromobilin-L-cysteine
annotated property: has_exact_synonym
annotated target: phytochrome chromophore
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-phytochromobilin-L-cysteine
annotated property: has_exact_synonym
annotated target: phytochromobilin cysteine adduct
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-phytochromobilin-L-cysteine
annotated property: has_related_synonym
annotated target: Phytochromobilin
has_synonym_type: Agreed label from MS community

Axiom
annotated source: S-phytochromobilin-L-cysteine
annotated property: has_related_synonym
annotated target: phytochromobilin
has_synonym_type: Description (full_name) from Unimod

heme-bis-L-cysteine
type: Class
subclass of: MOD_00699
subclass of: MOD_02067
definition: A protein modification that effectively results from forming an adduct between two cysteine residues and the porphyrin compound heme b, (7,12-diethenyl-3,8,13,17-tetramethylporphyrin-2,18-dipropanoato)iron.
diff avg: 616.5
diff formula: C 34 Fe 1 H 32 N 4 O 4 S 0
diff mono: 616.1773
formula: C 40 Fe 1 H 42 N 6 O 6 S 2
mass avg: 822.78
mass mono: 822.1957
origin: C, C
source: natural
has_exact_synonym: (7,12-bis[(1S)-1-([(2R)-2-amino-2-carboxyethyl]sulfanyl)ethyl]-3,8,13,17-tetramethyl-21H,23H-porphine-2,18-bis[2-carboxyethyl]-N21,N22,N23,N24)-ferrate
has_exact_synonym: 2,4-bis[1-(S-cysteinyl)ethyl]protoporphyrin IX
has_exact_synonym: BINDING Heme (covalent)
has_exact_synonym: HemeCys2
has_exact_synonym: biscysteinyl heme
has_exact_synonym: heme-bis-L-cysteine
has_obo_namespace: PSI-MOD
id: MOD:00143
in_subset: PSI-MOD-slim
comment: Cross-link 2.

Axiom
annotated source: heme-bis-L-cysteine
annotated property: definition
annotated target: A protein modification that effectively results from forming an adduct between two cysteine residues and the porphyrin compound heme b, (7,12-diethenyl-3,8,13,17-tetramethylporphyrin-2,18-dipropanoato)iron.
database_cross_reference: ChEBI:17627
database_cross_reference: PubMed:5545094
database_cross_reference: PubMed:8827449
database_cross_reference: RESID:AA0134

Axiom
annotated source: heme-bis-L-cysteine
annotated property: has_exact_synonym
annotated target: (7,12-bis[(1S)-1-([(2R)-2-amino-2-carboxyethyl]sulfanyl)ethyl]-3,8,13,17-tetramethyl-21H,23H-porphine-2,18-bis[2-carboxyethyl]-N21,N22,N23,N24)-ferrate
has_synonym_type: Systematic name from RESID

Axiom
annotated source: heme-bis-L-cysteine
annotated property: has_exact_synonym
annotated target: 2,4-bis[1-(S-cysteinyl)ethyl]protoporphyrin IX
has_synonym_type: Alternate name from RESID

Axiom
annotated source: heme-bis-L-cysteine
annotated property: has_exact_synonym
annotated target: BINDING Heme (covalent)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: heme-bis-L-cysteine
annotated property: has_exact_synonym
annotated target: HemeCys2
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: heme-bis-L-cysteine
annotated property: has_exact_synonym
annotated target: biscysteinyl heme
has_synonym_type: Alternate name from RESID

Axiom
annotated source: heme-bis-L-cysteine
annotated property: has_exact_synonym
annotated target: heme-bis-L-cysteine
has_synonym_type: Name from RESID

heme-L-cysteine
type: Class
subclass of: MOD_00699
subclass of: MOD_02067
definition: A protein modification that effectively results from forming an adduct between a cysteine residue and the porphyrin compound heme b, (7,12-diethenyl-3,8,13,17-tetramethylporphyrin-2,18-dipropanoato)iron.
diff avg: 616.5
diff formula: C 34 Fe 1 H 32 N 4 O 4 S 0
diff mono: 616.1773
formula: C 37 Fe 1 H 37 N 5 O 5 S 1
mass avg: 719.64
mass mono: 719.18646
origin: C
source: natural
database_cross_reference: Unimod:390
has_exact_synonym: (12-ethenyl-7-[(1S)-1-([(2R)-2-amino-2-carboxyethyl]sulfanyl)ethyl]-3,8,13,17-tetramethyl-21H,23H-porphine-2,18-bis[2-carboxyethyl]-N21,N22,N23,N24)-ferrate
has_exact_synonym: 4-[1-(S-cysteinyl)ethyl]protoporphyrin IX
has_exact_synonym: BINDING Heme (covalent; via 1 link)
has_exact_synonym: HemeCys1
has_exact_synonym: S-Heme (on Cysteine)
has_exact_synonym: cysteinyl heme
has_exact_synonym: heme-L-cysteine
has_obo_namespace: PSI-MOD
has_related_synonym: Heme
has_related_synonym: heme
id: MOD:00144
in_subset: PSI-MOD-slim
comment: From DeltaMass: Average Mass: 617.

Axiom
annotated source: heme-L-cysteine
annotated property: definition
annotated target: A protein modification that effectively results from forming an adduct between a cysteine residue and the porphyrin compound heme b, (7,12-diethenyl-3,8,13,17-tetramethylporphyrin-2,18-dipropanoato)iron.
database_cross_reference: ChEBI:17627
database_cross_reference: DeltaMass:0
database_cross_reference: PubMed:170910
database_cross_reference: PubMed:192772
database_cross_reference: PubMed:2536325
database_cross_reference: PubMed:9535866
database_cross_reference: RESID:AA0135
database_cross_reference: Unimod:390#C

Axiom
annotated source: heme-L-cysteine
annotated property: has_exact_synonym
annotated target: (12-ethenyl-7-[(1S)-1-([(2R)-2-amino-2-carboxyethyl]sulfanyl)ethyl]-3,8,13,17-tetramethyl-21H,23H-porphine-2,18-bis[2-carboxyethyl]-N21,N22,N23,N24)-ferrate
has_synonym_type: Systematic name from RESID

Axiom
annotated source: heme-L-cysteine
annotated property: has_exact_synonym
annotated target: 4-[1-(S-cysteinyl)ethyl]protoporphyrin IX
has_synonym_type: Alternate name from RESID

Axiom
annotated source: heme-L-cysteine
annotated property: has_exact_synonym
annotated target: BINDING Heme (covalent; via 1 link)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: heme-L-cysteine
annotated property: has_exact_synonym
annotated target: HemeCys1
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: heme-L-cysteine
annotated property: has_exact_synonym
annotated target: S-Heme (on Cysteine)
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: heme-L-cysteine
annotated property: has_exact_synonym
annotated target: cysteinyl heme
has_synonym_type: Alternate name from RESID

Axiom
annotated source: heme-L-cysteine
annotated property: has_exact_synonym
annotated target: heme-L-cysteine
has_synonym_type: Name from RESID

Axiom
annotated source: heme-L-cysteine
annotated property: has_related_synonym
annotated target: Heme
has_synonym_type: Agreed label from MS community

Axiom
annotated source: heme-L-cysteine
annotated property: has_related_synonym
annotated target: heme
has_synonym_type: Description (full_name) from Unimod

tetrakis-L-cysteinyl iron
type: Class
subclass of: MOD_00738
subclass of: MOD_02067
definition: A protein modification that effectively converts four L-cysteine residues iron atom to tetrakis-L-cysteinyl iron.
diff avg: 51.81
diff formula: C 0 Fe 1 H -4 N 0 O 0 S 0
diff mono: 51.904736
formal charge: 2-
formula: C 12 Fe 1 H 16 N 4 O 4 S 4
mass avg: 464.37
mass mono: 463.94147
origin: C, C, C, C
source: natural
has_exact_synonym: METAL Iron
has_exact_synonym: tetrakis(cysteinato-kappaS)-iron
has_exact_synonym: tetrakis-L-cysteinyl iron
has_obo_namespace: PSI-MOD
id: MOD:00145
comment: Cross-link 4.

Axiom
annotated source: tetrakis-L-cysteinyl iron
annotated property: definition
annotated target: A protein modification that effectively converts four L-cysteine residues iron atom to tetrakis-L-cysteinyl iron.
database_cross_reference: PubMed:1303768
database_cross_reference: PubMed:2244884
database_cross_reference: RESID:AA0136

Axiom
annotated source: tetrakis-L-cysteinyl iron
annotated property: has_exact_synonym
annotated target: METAL Iron
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: tetrakis-L-cysteinyl iron
annotated property: has_exact_synonym
annotated target: tetrakis(cysteinato-kappaS)-iron
has_synonym_type: Systematic name from RESID

Axiom
annotated source: tetrakis-L-cysteinyl iron
annotated property: has_exact_synonym
annotated target: tetrakis-L-cysteinyl iron
has_synonym_type: Name from RESID

tetrakis-L-cysteinyl diiron disulfide
type: Class
subclass of: MOD_00739
subclass of: MOD_02067
definition: A protein modification that effectively converts four L-cysteine residues and a two-iron two-sulfur cluster to tetrakis-L-cysteinyl diiron disulfide.
diff avg: 171.78
diff formula: C 0 Fe 2 H -4 N 0 O 0 S 2
diff mono: 171.78381
formal charge: 2-
formula: C 12 Fe 2 H 16 N 4 O 4 S 6
mass avg: 584.34
mass mono: 583.82056
origin: C, C, C, C
source: natural
has_exact_synonym: METAL Iron-sulfur (2Fe-2S)
has_exact_synonym: METAL Iron-sulfur (2Fe-2S); shared with dimeric partner
has_exact_synonym: tetrakis-L-cysteinyl diiron disulfide
has_exact_synonym: tetrakiscysteinato-1kappa(2)S,2kappa(2)S-di-mu-sulfido-diiron
has_obo_namespace: PSI-MOD
id: MOD:00146
comment: Cross-link 4.

Axiom
annotated source: tetrakis-L-cysteinyl diiron disulfide
annotated property: definition
annotated target: A protein modification that effectively converts four L-cysteine residues and a two-iron two-sulfur cluster to tetrakis-L-cysteinyl diiron disulfide.
database_cross_reference: PubMed:2123937
database_cross_reference: PubMed:6801028
database_cross_reference: PubMed:7763242
database_cross_reference: PubMed:8688437
database_cross_reference: RESID:AA0137

Axiom
annotated source: tetrakis-L-cysteinyl diiron disulfide
annotated property: has_exact_synonym
annotated target: METAL Iron-sulfur (2Fe-2S)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: tetrakis-L-cysteinyl diiron disulfide
annotated property: has_exact_synonym
annotated target: METAL Iron-sulfur (2Fe-2S); shared with dimeric partner
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: tetrakis-L-cysteinyl diiron disulfide
annotated property: has_exact_synonym
annotated target: tetrakis-L-cysteinyl diiron disulfide
has_synonym_type: Name from RESID

Axiom
annotated source: tetrakis-L-cysteinyl diiron disulfide
annotated property: has_exact_synonym
annotated target: tetrakiscysteinato-1kappa(2)S,2kappa(2)S-di-mu-sulfido-diiron
has_synonym_type: Systematic name from RESID

hexakis-L-cysteinyl triiron trisulfide
type: Class
subclass of: MOD_00739
subclass of: MOD_02067
definition: A protein modification that effectively converts six L-cysteine residues and a three-iron three-sulfur cluster to hexakis-L-cysteinyl triiron trisulfide.
diff avg: 257.67
diff formula: C 0 Fe 3 H -6 N 0 O 0 S 3
diff mono: 257.67572
formal charge: 3-
formula: C 18 Fe 3 H 24 N 6 O 6 S 9
mass avg: 876.5
mass mono: 875.73083
origin: C, C, C, C, C, C
source: hypothetical
has_exact_synonym: hexakis-L-cysteinyl triiron trisulfide
has_exact_synonym: tri-mu-sulfido-hexakiscysteinato-1kappa(2)S,2kappa(2)S,3kappa(2)S-triiron
has_exact_synonym: tri-mu-sulfidotris(biscysteinato-kappaS-iron)
has_obo_namespace: PSI-MOD
id: MOD:00147
comment: Cross-link 6. This is a deprecated entry in RESID. It probably does not occur naturally [JSG].

Axiom
annotated source: hexakis-L-cysteinyl triiron trisulfide
annotated property: definition
annotated target: A protein modification that effectively converts six L-cysteine residues and a three-iron three-sulfur cluster to hexakis-L-cysteinyl triiron trisulfide.
database_cross_reference: PubMed:3379067
database_cross_reference: PubMed:3932661
database_cross_reference: PubMed:7354058
database_cross_reference: RESID:AA0138

Axiom
annotated source: hexakis-L-cysteinyl triiron trisulfide
annotated property: has_exact_synonym
annotated target: hexakis-L-cysteinyl triiron trisulfide
has_synonym_type: Name from RESID

Axiom
annotated source: hexakis-L-cysteinyl triiron trisulfide
annotated property: has_exact_synonym
annotated target: tri-mu-sulfido-hexakiscysteinato-1kappa(2)S,2kappa(2)S,3kappa(2)S-triiron
has_synonym_type: Systematic name from RESID

Axiom
annotated source: hexakis-L-cysteinyl triiron trisulfide
annotated property: has_exact_synonym
annotated target: tri-mu-sulfidotris(biscysteinato-kappaS-iron)
has_synonym_type: Alternate name from RESID

tris-L-cysteinyl triiron tetrasulfide
type: Class
subclass of: MOD_00739
subclass of: MOD_02067
definition: A protein modification that effectively converts three L-cysteine residues and a three-iron four-sulfur cluster to tris-L-cysteinyl triiron tetrasulfide.
diff avg: 292.75
diff formula: C 0 Fe 3 H -3 N 0 O 0 S 4
diff mono: 292.67126
formal charge: 3-
formula: C 9 Fe 3 H 12 N 3 O 3 S 7
mass avg: 602.17
mass mono: 601.6988
origin: C, C, C
source: natural
has_exact_synonym: METAL Iron-sulfur (3Fe-4S)
has_exact_synonym: mu3-sulfido tri-mu-sulfido tris-S-L-cysteinyl triiron
has_exact_synonym: mu3-sulfido-tri-mu-sulfido-triscysteinato-1kappaS,2kappaS,3kappaS-triiron
has_exact_synonym: tris-L-cysteinyl triiron tetrasulfide
has_exact_synonym: tris-L-cysteinyl triiron tetrasulfide C3 cluster
has_exact_synonym: tris-L-cysteinyl triiron tetrasulfide cubane form
has_exact_synonym: tris-L-cysteinyl triiron tetrasulfide cuboid cluster
has_exact_synonym: tris-L-cysteinyl triiron tetrasulfide trigonal cluster
has_obo_namespace: PSI-MOD
id: MOD:00148
comment: Cross-link 3.

Axiom
annotated source: tris-L-cysteinyl triiron tetrasulfide
annotated property: definition
annotated target: A protein modification that effectively converts three L-cysteine residues and a three-iron four-sulfur cluster to tris-L-cysteinyl triiron tetrasulfide.
database_cross_reference: PubMed:10555576
database_cross_reference: PubMed:2056535
database_cross_reference: PubMed:3422475
database_cross_reference: PubMed:6848518
database_cross_reference: PubMed:7819255
database_cross_reference: PubMed:9063899
database_cross_reference: RESID:AA0139

Axiom
annotated source: tris-L-cysteinyl triiron tetrasulfide
annotated property: has_exact_synonym
annotated target: METAL Iron-sulfur (3Fe-4S)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: tris-L-cysteinyl triiron tetrasulfide
annotated property: has_exact_synonym
annotated target: mu3-sulfido tri-mu-sulfido tris-S-L-cysteinyl triiron
has_synonym_type: Alternate name from RESID

Axiom
annotated source: tris-L-cysteinyl triiron tetrasulfide
annotated property: has_exact_synonym
annotated target: mu3-sulfido-tri-mu-sulfido-triscysteinato-1kappaS,2kappaS,3kappaS-triiron
has_synonym_type: Systematic name from RESID

Axiom
annotated source: tris-L-cysteinyl triiron tetrasulfide
annotated property: has_exact_synonym
annotated target: tris-L-cysteinyl triiron tetrasulfide
has_synonym_type: Name from RESID

Axiom
annotated source: tris-L-cysteinyl triiron tetrasulfide
annotated property: has_exact_synonym
annotated target: tris-L-cysteinyl triiron tetrasulfide C3 cluster
has_synonym_type: Alternate name from RESID

Axiom
annotated source: tris-L-cysteinyl triiron tetrasulfide
annotated property: has_exact_synonym
annotated target: tris-L-cysteinyl triiron tetrasulfide cubane form
has_synonym_type: Alternate name from RESID

Axiom
annotated source: tris-L-cysteinyl triiron tetrasulfide
annotated property: has_exact_synonym
annotated target: tris-L-cysteinyl triiron tetrasulfide cuboid cluster
has_synonym_type: Alternate name from RESID

Axiom
annotated source: tris-L-cysteinyl triiron tetrasulfide
annotated property: has_exact_synonym
annotated target: tris-L-cysteinyl triiron tetrasulfide trigonal cluster
has_synonym_type: Alternate name from RESID

tetrakis-L-cysteinyl tetrairon tetrasulfide
type: Class
subclass of: MOD_00739
subclass of: MOD_02067
definition: A protein modification that effectively converts four L-cysteine residues and a four-iron four-sulfur cluster to tetrakis-L-cysteinyl tetrairon tetrasulfide.
diff avg: 347.59
diff formula: C 0 Fe 4 H -4 N 0 O 0 S 4
diff mono: 347.59784
formal charge: 2-
formula: C 12 Fe 4 H 16 N 4 O 4 S 8
mass avg: 760.15
mass mono: 759.6346
origin: C, C, C, C
source: natural
has_exact_synonym: METAL Iron-sulfur (4Fe-4S)
has_exact_synonym: METAL Iron-sulfur (4Fe-4S); shared with dimeric partner
has_exact_synonym: tetra-mu3-sulfido-tetrakis(cysteinato)-1kappaS,2kappaS,3kappaS,4kappaS-tetrahedro-tetrairon
has_exact_synonym: tetra-mu3-sulfidotetrakis(S-cysteinyliron)
has_exact_synonym: tetrakis-L-cysteinyl tetrairon tetrasulfide
has_obo_namespace: PSI-MOD
id: MOD:00149
comment: Cross-link 4.

Axiom
annotated source: tetrakis-L-cysteinyl tetrairon tetrasulfide
annotated property: definition
annotated target: A protein modification that effectively converts four L-cysteine residues and a four-iron four-sulfur cluster to tetrakis-L-cysteinyl tetrairon tetrasulfide.
database_cross_reference: PubMed:3351918
database_cross_reference: PubMed:7803404
database_cross_reference: PubMed:7819196
database_cross_reference: PubMed:932007
database_cross_reference: RESID:AA0140

Axiom
annotated source: tetrakis-L-cysteinyl tetrairon tetrasulfide
annotated property: has_exact_synonym
annotated target: METAL Iron-sulfur (4Fe-4S)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: tetrakis-L-cysteinyl tetrairon tetrasulfide
annotated property: has_exact_synonym
annotated target: METAL Iron-sulfur (4Fe-4S); shared with dimeric partner
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: tetrakis-L-cysteinyl tetrairon tetrasulfide
annotated property: has_exact_synonym
annotated target: tetra-mu3-sulfido-tetrakis(cysteinato)-1kappaS,2kappaS,3kappaS,4kappaS-tetrahedro-tetrairon
has_synonym_type: Systematic name from RESID

Axiom
annotated source: tetrakis-L-cysteinyl tetrairon tetrasulfide
annotated property: has_exact_synonym
annotated target: tetra-mu3-sulfidotetrakis(S-cysteinyliron)
has_synonym_type: Alternate name from RESID

Axiom
annotated source: tetrakis-L-cysteinyl tetrairon tetrasulfide
annotated property: has_exact_synonym
annotated target: tetrakis-L-cysteinyl tetrairon tetrasulfide
has_synonym_type: Name from RESID

L-cysteinyl-L-histidino-homocitryl molybdenum heptairon nonasulfide
type: Class
subclass of: MOD_00739
subclass of: MOD_00743
subclass of: MOD_02067
subclass of: MOD_02070
definition: A protein modification that effectively converts an L-cysteine residue, an L-histidine residue, homocitric acid and a one-molybdenum seven-iron nine-sulfur cluster to L-cysteinyl-L-histidino-homocitryl molybdenum heptairon nonasulfide.
diff avg: 991.53
diff formula: C 7 Fe 7 H 6 Mo 1 N 1 O 7 S 9
diff mono: 993.213
formula: C 16 Fe 7 H 18 Mo 1 N 5 O 9 S 10
mass avg: 1231.81
mass mono: 1233.2811
origin: C, H
source: natural
has_exact_synonym: L-cysteinyl-L-histidino-homocitryl molybdenum heptairon nonasulfide carbide
has_exact_synonym: cysteinato-8kappaS-histidino-1kappaN(tau)-[(2R)-4-carboxy-2-(carboxymethyl)-2-oxidobutanoate-1kappaO(1),1kappaO(2)]-mu6-carbido-2:3:4:5:6:7kappa(6)C-hexa-mu3-sulfido-1:2:3kappa(3)S;1:2:4kappa(3)S;1:3:4kappa(3)S;5:6:8kappa(3)S;5:7:8kappa(3)S;6:7:8kappa(3)S-tri-mu2-sulfido-2:5kappa(2)S;3:6kappa(2)S;4:7kappa(2)S molybdenum heptairon
has_exact_synonym: nitrogenase iron-molybdenum cofactor
has_obo_namespace: PSI-MOD
id: MOD:00150
comment: Cross-link 2; incidental to RESID:AA0300.

Axiom
annotated source: L-cysteinyl-L-histidino-homocitryl molybdenum heptairon nonasulfide
annotated property: definition
annotated target: A protein modification that effectively converts an L-cysteine residue, an L-histidine residue, homocitric acid and a one-molybdenum seven-iron nine-sulfur cluster to L-cysteinyl-L-histidino-homocitryl molybdenum heptairon nonasulfide.
database_cross_reference: PubMed:10525412
database_cross_reference: PubMed:12215645
database_cross_reference: PubMed:12733878
database_cross_reference: PubMed:1529354
database_cross_reference: PubMed:8027059
database_cross_reference: RESID:AA0141

Axiom
annotated source: L-cysteinyl-L-histidino-homocitryl molybdenum heptairon nonasulfide
annotated property: has_exact_synonym
annotated target: L-cysteinyl-L-histidino-homocitryl molybdenum heptairon nonasulfide carbide
has_synonym_type: Name from RESID

Axiom
annotated source: L-cysteinyl-L-histidino-homocitryl molybdenum heptairon nonasulfide
annotated property: has_exact_synonym
annotated target: cysteinato-8kappaS-histidino-1kappaN(tau)-[(2R)-4-carboxy-2-(carboxymethyl)-2-oxidobutanoate-1kappaO(1),1kappaO(2)]-mu6-carbido-2:3:4:5:6:7kappa(6)C-hexa-mu3-sulfido-1:2:3kappa(3)S;1:2:4kappa(3)S;1:3:4kappa(3)S;5:6:8kappa(3)S;5:7:8kappa(3)S;6:7:8kappa(3)S-tri-mu2-sulfido-2:5kappa(2)S;3:6kappa(2)S;4:7kappa(2)S molybdenum heptairon
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-cysteinyl-L-histidino-homocitryl molybdenum heptairon nonasulfide
annotated property: has_exact_synonym
annotated target: nitrogenase iron-molybdenum cofactor
has_synonym_type: Alternate name from RESID

L-cysteinyl molybdopterin
type: Class
subclass of: MOD_00744
subclass of: MOD_00861
subclass of: MOD_02067
definition: A protein modification that effectively converts an L-cysteine residue to L-cysteinyl molybdopterin.
diff avg: 520.27
diff formula: C 10 H 11 Mo 1 N 5 O 8 P 1 S 2
diff mono: 521.8841
formula: C 13 H 16 Mo 1 N 6 O 9 P 1 S 3
mass avg: 623.41
mass mono: 624.89325
origin: C
source: natural
database_cross_reference: Unimod:391
has_exact_synonym: (4R,5aR,11aR)-8-amino-2-[(2R)-2-amino-2-carboxyethyl]sulfanyl-4,5a,6,9,10,11,11a-heptahydro-4-(phosphoric acid)methyl-2,2,10-trioxo-pteridino[6,7-5,6]pyrano[3,4-4,3][1,2,5]molybdadithiolene
has_exact_synonym: L-cysteinyl molybdopterin
has_exact_synonym: METAL Molybdenum-pterin
has_exact_synonym: MoPterCys
has_exact_synonym: cysteinyl Mo-molybdopterin
has_exact_synonym: cysteinyl Mo-pterin
has_exact_synonym: molybdoenzyme molybdenum cofactor
has_obo_namespace: PSI-MOD
has_related_synonym: Molybdopterin
has_related_synonym: molybdopterin
id: MOD:00151
in_subset: PSI-MOD-slim

Axiom
annotated source: L-cysteinyl molybdopterin
annotated property: definition
annotated target: A protein modification that effectively converts an L-cysteine residue to L-cysteinyl molybdopterin.
database_cross_reference: PubMed:14527393
database_cross_reference: PubMed:7878465
database_cross_reference: PubMed:9428520
database_cross_reference: RESID:AA0142
database_cross_reference: Unimod:391#C

Axiom
annotated source: L-cysteinyl molybdopterin
annotated property: has_exact_synonym
annotated target: (4R,5aR,11aR)-8-amino-2-[(2R)-2-amino-2-carboxyethyl]sulfanyl-4,5a,6,9,10,11,11a-heptahydro-4-(phosphoric acid)methyl-2,2,10-trioxo-pteridino[6,7-5,6]pyrano[3,4-4,3][1,2,5]molybdadithiolene
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-cysteinyl molybdopterin
annotated property: has_exact_synonym
annotated target: L-cysteinyl molybdopterin
has_synonym_type: Name from RESID

Axiom
annotated source: L-cysteinyl molybdopterin
annotated property: has_exact_synonym
annotated target: METAL Molybdenum-pterin
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-cysteinyl molybdopterin
annotated property: has_exact_synonym
annotated target: MoPterCys
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-cysteinyl molybdopterin
annotated property: has_exact_synonym
annotated target: cysteinyl Mo-molybdopterin
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteinyl molybdopterin
annotated property: has_exact_synonym
annotated target: cysteinyl Mo-pterin
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteinyl molybdopterin
annotated property: has_exact_synonym
annotated target: molybdoenzyme molybdenum cofactor
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteinyl molybdopterin
annotated property: has_related_synonym
annotated target: Molybdopterin
has_synonym_type: Agreed label from MS community

Axiom
annotated source: L-cysteinyl molybdopterin
annotated property: has_related_synonym
annotated target: molybdopterin
has_synonym_type: Description (full_name) from Unimod

S-(8alpha-FAD)-L-cysteine
type: Class
subclass of: MOD_00895
subclass of: MOD_00905
definition: A protein modification that effectively converts an L-cysteine residue to S'-(8alpha-FAD)-L-cystine.
diff avg: 783.54
diff formula: C 27 H 31 N 9 O 15 P 2 S 0
diff mono: 783.1415
formula: C 30 H 36 N 10 O 16 P 2 S 1
mass avg: 886.68
mass mono: 886.1507
origin: C
source: natural
database_cross_reference: Unimod:50
database_cross_reference: uniprot.ptm:PTM-0272
has_exact_synonym: (2R)-2-amino-3-[8alpha-riboflavin 5'-(trihydrogen diphosphate) 5'->5'-ester with adenosine]sulfanylpropanoic acid
has_exact_synonym: 8alpha-(S-cysteinyl)FAD
has_exact_synonym: MOD_RES S-8alpha-FAD cysteine
has_exact_synonym: S-(8alpha-FAD)-L-cysteine
has_exact_synonym: S8aFADCys
has_obo_namespace: PSI-MOD
has_related_synonym: FAD
has_related_synonym: Flavin adenine dinucleotide
id: MOD:00152
in_subset: PSI-MOD-slim

Axiom
annotated source: S-(8alpha-FAD)-L-cysteine
annotated property: definition
annotated target: A protein modification that effectively converts an L-cysteine residue to S'-(8alpha-FAD)-L-cystine.
database_cross_reference: PubMed:10220347
database_cross_reference: RESID:AA0143
database_cross_reference: Unimod:50#C

Axiom
annotated source: S-(8alpha-FAD)-L-cysteine
annotated property: has_exact_synonym
annotated target: (2R)-2-amino-3-[8alpha-riboflavin 5'-(trihydrogen diphosphate) 5'->5'-ester with adenosine]sulfanylpropanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: S-(8alpha-FAD)-L-cysteine
annotated property: has_exact_synonym
annotated target: 8alpha-(S-cysteinyl)FAD
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-(8alpha-FAD)-L-cysteine
annotated property: has_exact_synonym
annotated target: MOD_RES S-8alpha-FAD cysteine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: S-(8alpha-FAD)-L-cysteine
annotated property: has_exact_synonym
annotated target: S-(8alpha-FAD)-L-cysteine
has_synonym_type: Name from RESID

Axiom
annotated source: S-(8alpha-FAD)-L-cysteine
annotated property: has_exact_synonym
annotated target: S8aFADCys
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: S-(8alpha-FAD)-L-cysteine
annotated property: has_related_synonym
annotated target: FAD
has_synonym_type: Agreed label from MS community

Axiom
annotated source: S-(8alpha-FAD)-L-cysteine
annotated property: has_related_synonym
annotated target: Flavin adenine dinucleotide
has_synonym_type: Description (full_name) from Unimod

3'-(8alpha-FAD)-L-histidine
type: Class
subclass of: MOD_00895
subclass of: MOD_00909
definition: A protein modification that effectively converts an L-histidine residue to 3'-(8alpha-FAD)-L-histidine.
diff avg: 783.54
diff formula: C 27 H 31 N 9 O 15 P 2
diff mono: 783.1415
formula: C 33 H 38 N 12 O 16 P 2
mass avg: 920.68
mass mono: 920.2004
origin: H
source: natural
database_cross_reference: Unimod:50
database_cross_reference: uniprot.ptm:PTM-0258
has_exact_synonym: (2S)-2-amino-3-(3-[8alpha-riboflavin 5'-(trihydrogen diphosphate) 5'->5'-ester with adenosine]imidazol-4-yl)propanoic acid
has_exact_synonym: 3'-(8alpha-FAD)-L-histidine
has_exact_synonym: 8alpha-(N(delta)-histidyl)FAD
has_exact_synonym: 8alpha-(N3'-histidyl)FAD
has_exact_synonym: MOD_RES Pros-8alpha-FAD histidine
has_exact_synonym: N(pi)-(8alpha-FAD)-histidine
has_exact_synonym: Np8aFADHis
has_exact_synonym: pros-(8alpha-FAD)-histidine
has_obo_namespace: PSI-MOD
has_related_synonym: 8alpha-N1-histidyl FAD
has_related_synonym: FAD
has_related_synonym: Flavin adenine dinucleotide
id: MOD:00153
in_subset: PSI-MOD-slim

Axiom
annotated source: 3'-(8alpha-FAD)-L-histidine
annotated property: definition
annotated target: A protein modification that effectively converts an L-histidine residue to 3'-(8alpha-FAD)-L-histidine.
database_cross_reference: PubMed:241294
database_cross_reference: PubMed:8076
database_cross_reference: RESID:AA0144
database_cross_reference: Unimod:50#H

Axiom
annotated source: 3'-(8alpha-FAD)-L-histidine
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-3-(3-[8alpha-riboflavin 5'-(trihydrogen diphosphate) 5'->5'-ester with adenosine]imidazol-4-yl)propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: 3'-(8alpha-FAD)-L-histidine
annotated property: has_exact_synonym
annotated target: 3'-(8alpha-FAD)-L-histidine
has_synonym_type: Name from RESID

Axiom
annotated source: 3'-(8alpha-FAD)-L-histidine
annotated property: has_exact_synonym
annotated target: 8alpha-(N(delta)-histidyl)FAD
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 3'-(8alpha-FAD)-L-histidine
annotated property: has_exact_synonym
annotated target: 8alpha-(N3'-histidyl)FAD
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 3'-(8alpha-FAD)-L-histidine
annotated property: has_exact_synonym
annotated target: MOD_RES Pros-8alpha-FAD histidine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: 3'-(8alpha-FAD)-L-histidine
annotated property: has_exact_synonym
annotated target: N(pi)-(8alpha-FAD)-histidine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 3'-(8alpha-FAD)-L-histidine
annotated property: has_exact_synonym
annotated target: Np8aFADHis
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: 3'-(8alpha-FAD)-L-histidine
annotated property: has_exact_synonym
annotated target: pros-(8alpha-FAD)-histidine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 3'-(8alpha-FAD)-L-histidine
annotated property: has_related_synonym
annotated target: 8alpha-N1-histidyl FAD
has_synonym_type: Misnomer tagged alternate name from RESID

Axiom
annotated source: 3'-(8alpha-FAD)-L-histidine
annotated property: has_related_synonym
annotated target: FAD
has_synonym_type: Agreed label from MS community

Axiom
annotated source: 3'-(8alpha-FAD)-L-histidine
annotated property: has_related_synonym
annotated target: Flavin adenine dinucleotide
has_synonym_type: Description (full_name) from Unimod

O4'-(8alpha-FAD)-L-tyrosine
type: Class
subclass of: MOD_00895
subclass of: MOD_00919
definition: A protein modification that effectively converts an L-tyrosine residue to O4'-(8alpha-FAD)-L-tyrosine.
diff avg: 783.54
diff formula: C 27 H 31 N 9 O 15 P 2
diff mono: 783.1415
formula: C 36 H 40 N 10 O 17 P 2
mass avg: 946.72
mass mono: 946.20483
origin: Y
source: natural
database_cross_reference: Unimod:50
database_cross_reference: uniprot.ptm:PTM-0231
has_exact_synonym: (2S)-2-amino-3-(4-[8alpha-riboflavin 5'-(trihydrogen diphosphate) 5'->5'-ester with adenosine]oxyphenyl)propanoic acid
has_exact_synonym: 8alpha-(O4'-tyrosyl)FAD
has_exact_synonym: MOD_RES O-8alpha-FAD tyrosine
has_exact_synonym: O-8 alpha-Flavin [FAD])- (of Tyrosine)
has_exact_synonym: O4'-(8alpha-FAD)-L-tyrosine
has_exact_synonym: O8aFADTyr
has_obo_namespace: PSI-MOD
has_related_synonym: FAD
has_related_synonym: Flavin adenine dinucleotide
id: MOD:00154
in_subset: PSI-MOD-slim
comment: From DeltaMass: Average Mass: 783

Axiom
annotated source: O4'-(8alpha-FAD)-L-tyrosine
annotated property: definition
annotated target: A protein modification that effectively converts an L-tyrosine residue to O4'-(8alpha-FAD)-L-tyrosine.
database_cross_reference: DeltaMass:0
database_cross_reference: PubMed:7391034
database_cross_reference: RESID:AA0145
database_cross_reference: Unimod:50#Y

Axiom
annotated source: O4'-(8alpha-FAD)-L-tyrosine
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-3-(4-[8alpha-riboflavin 5'-(trihydrogen diphosphate) 5'->5'-ester with adenosine]oxyphenyl)propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: O4'-(8alpha-FAD)-L-tyrosine
annotated property: has_exact_synonym
annotated target: 8alpha-(O4'-tyrosyl)FAD
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O4'-(8alpha-FAD)-L-tyrosine
annotated property: has_exact_synonym
annotated target: MOD_RES O-8alpha-FAD tyrosine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: O4'-(8alpha-FAD)-L-tyrosine
annotated property: has_exact_synonym
annotated target: O-8 alpha-Flavin [FAD])- (of Tyrosine)
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: O4'-(8alpha-FAD)-L-tyrosine
annotated property: has_exact_synonym
annotated target: O4'-(8alpha-FAD)-L-tyrosine
has_synonym_type: Name from RESID

Axiom
annotated source: O4'-(8alpha-FAD)-L-tyrosine
annotated property: has_exact_synonym
annotated target: O8aFADTyr
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: O4'-(8alpha-FAD)-L-tyrosine
annotated property: has_related_synonym
annotated target: FAD
has_synonym_type: Agreed label from MS community

Axiom
annotated source: O4'-(8alpha-FAD)-L-tyrosine
annotated property: has_related_synonym
annotated target: Flavin adenine dinucleotide
has_synonym_type: Description (full_name) from Unimod

L-3',4'-dihydroxyphenylalanine
type: Class
subclass of: monohydroxylated residue
subclass of: MOD_00707
definition: A protein modification that effectively converts an L-tyrosine residue to L-3',4'-dihydroxyphenylalanine.
diff avg: 16.0
diff formula: C 0 H 0 N 0 O 1
diff mono: 15.994915
formula: C 9 H 9 N 1 O 3
mass avg: 179.18
mass mono: 179.05824
origin: Y
source: natural
database_cross_reference: Unimod:35
database_cross_reference: uniprot.ptm:PTM-0023
has_exact_synonym: (2S)-2-amino-3-(3,4-dihydroxyphenyl)propanoic acid
has_exact_synonym: 3,4-Dihydroxy-Phenylalanine (from Tyrosine) (DOPA)
has_exact_synonym: 3HyTyr
has_exact_synonym: L-3',4'-dihydroxyphenylalanine
has_exact_synonym: L-3'-hydroxytyrosine
has_exact_synonym: L-DOPA
has_exact_synonym: MOD_RES 3',4'-dihydroxyphenylalanine
has_exact_synonym: hydroxylationy
has_exact_synonym: levodopa
has_exact_synonym: mod194
has_obo_namespace: PSI-MOD
id: MOD:00155
in_subset: PSI-MOD-slim
comment: incidental to RESID:AA0368 From DeltaMass: Average Mass: 16

Axiom
annotated source: L-3',4'-dihydroxyphenylalanine
annotated property: definition
annotated target: A protein modification that effectively converts an L-tyrosine residue to L-3',4'-dihydroxyphenylalanine.
database_cross_reference: ChEBI:141815
database_cross_reference: DeltaMass:0
database_cross_reference: OMSSA:194
database_cross_reference: OMSSA:64
database_cross_reference: PubMed:1610822
database_cross_reference: PubMed:1903612
database_cross_reference: PubMed:3734192
database_cross_reference: RESID:AA0146
database_cross_reference: Unimod:35#Y

Axiom
annotated source: L-3',4'-dihydroxyphenylalanine
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-3-(3,4-dihydroxyphenyl)propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-3',4'-dihydroxyphenylalanine
annotated property: has_exact_synonym
annotated target: 3,4-Dihydroxy-Phenylalanine (from Tyrosine) (DOPA)
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: L-3',4'-dihydroxyphenylalanine
annotated property: has_exact_synonym
annotated target: 3HyTyr
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-3',4'-dihydroxyphenylalanine
annotated property: has_exact_synonym
annotated target: L-3',4'-dihydroxyphenylalanine
has_synonym_type: Name from RESID

Axiom
annotated source: L-3',4'-dihydroxyphenylalanine
annotated property: has_exact_synonym
annotated target: L-3'-hydroxytyrosine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-3',4'-dihydroxyphenylalanine
annotated property: has_exact_synonym
annotated target: L-DOPA
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-3',4'-dihydroxyphenylalanine
annotated property: has_exact_synonym
annotated target: MOD_RES 3',4'-dihydroxyphenylalanine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-3',4'-dihydroxyphenylalanine
annotated property: has_exact_synonym
annotated target: hydroxylationy
has_synonym_type: Short label from OMSSA

Axiom
annotated source: L-3',4'-dihydroxyphenylalanine
annotated property: has_exact_synonym
annotated target: levodopa
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-3',4'-dihydroxyphenylalanine
annotated property: has_exact_synonym
annotated target: mod194
has_synonym_type: Short label from OMSSA

L-2',4',5'-topaquinone
type: Class
subclass of: MOD_00679
subclass of: MOD_00919
definition: A protein modification that effectively converts an L-tyrosine residue to an L-2',4',5'-topaquinone.
diff avg: 29.98
diff formula: C 0 H -2 N 0 O 2
diff mono: 29.974178
formula: C 9 H 7 N 1 O 4
mass avg: 193.16
mass mono: 193.0375
origin: Y
source: natural
database_cross_reference: Unimod:392
database_cross_reference: uniprot.ptm:PTM-0009
has_exact_synonym: (2S)-2-amino-3-(5-hydroxy-2,5-cyclohexadien-1,4-dion-2-yl)propanoic acid
has_exact_synonym: 2,4,5-trihydroxyphenylalanine quinone
has_exact_synonym: 5-(2-carboxy-2-aminoethyl)-2-hydroxy-1,4-benzoquinone
has_exact_synonym: L-2',4',5'-topaquinone
has_exact_synonym: L-2,4,5-TOPAquinone
has_exact_synonym: MOD_RES 2',4',5'-topaquinone
has_exact_synonym: TPQ
has_exact_synonym: TopaQ
has_obo_namespace: PSI-MOD
has_related_synonym: Quinone
has_related_synonym: quinone
id: MOD:00156
in_subset: PSI-MOD-slim

Axiom
annotated source: L-2',4',5'-topaquinone
annotated property: definition
annotated target: A protein modification that effectively converts an L-tyrosine residue to an L-2',4',5'-topaquinone.
database_cross_reference: ChEBI:21187
database_cross_reference: PubMed:10387067
database_cross_reference: PubMed:1457410
database_cross_reference: PubMed:1569055
database_cross_reference: PubMed:2111581
database_cross_reference: RESID:AA0147
database_cross_reference: Unimod:392#Y

Axiom
annotated source: L-2',4',5'-topaquinone
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-3-(5-hydroxy-2,5-cyclohexadien-1,4-dion-2-yl)propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-2',4',5'-topaquinone
annotated property: has_exact_synonym
annotated target: 2,4,5-trihydroxyphenylalanine quinone
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-2',4',5'-topaquinone
annotated property: has_exact_synonym
annotated target: 5-(2-carboxy-2-aminoethyl)-2-hydroxy-1,4-benzoquinone
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-2',4',5'-topaquinone
annotated property: has_exact_synonym
annotated target: L-2',4',5'-topaquinone
has_synonym_type: Name from RESID

Axiom
annotated source: L-2',4',5'-topaquinone
annotated property: has_exact_synonym
annotated target: L-2,4,5-TOPAquinone
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-2',4',5'-topaquinone
annotated property: has_exact_synonym
annotated target: MOD_RES 2',4',5'-topaquinone
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-2',4',5'-topaquinone
annotated property: has_exact_synonym
annotated target: TPQ
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-2',4',5'-topaquinone
annotated property: has_exact_synonym
annotated target: TopaQ
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-2',4',5'-topaquinone
annotated property: has_related_synonym
annotated target: Quinone
has_synonym_type: Agreed label from MS community

Axiom
annotated source: L-2',4',5'-topaquinone
annotated property: has_related_synonym
annotated target: quinone
has_synonym_type: Description (full_name) from Unimod

L-tryptophyl quinone
type: Class
subclass of: MOD_00679
subclass of: MOD_00918
definition: A protein modification that effectively converts an L-tryptophan residue to an L-tryptophan quinone.
diff avg: 29.98
diff formula: C 0 H -2 N 0 O 2
diff mono: 29.974178
formula: C 11 H 8 N 2 O 3
mass avg: 216.2
mass mono: 216.0535
origin: W
source: natural
database_cross_reference: Unimod:392
database_cross_reference: uniprot.ptm:PTM-0299
has_exact_synonym: (2S)-2-amino-3-(6,7-dioxo-1H-indol-3-yl)propanoic acid
has_exact_synonym: 2-amino-3-(6,7-dioxo-6,7-dihydro-1H-indol-3-yl)-propionic acid
has_exact_synonym: 3-[(2S)-2-amino-2-carboxyethyl]-6,7-indolinedione
has_exact_synonym: 6,7 Dione (from Tryptophan)
has_exact_synonym: L-tryptophyl quinone
has_exact_synonym: MOD_RES Tryptophylquinone
has_exact_synonym: N-(3-carboxy-1-oxopropyl)-L-tryptophan
has_exact_synonym: TrpQ
has_obo_namespace: PSI-MOD
has_related_synonym: Quinone
has_related_synonym: quinone
id: MOD:00157
in_subset: PSI-MOD-slim
comment: incidental to RESID:AA0149; incidental to RESID:AA0313; From DeltaMass: Average Mass: 30.

Axiom
annotated source: L-tryptophyl quinone
annotated property: definition
annotated target: A protein modification that effectively converts an L-tryptophan residue to an L-tryptophan quinone.
database_cross_reference: DeltaMass:0
database_cross_reference: PubMed:2028257
database_cross_reference: RESID:AA0148
database_cross_reference: Unimod:392#W

Axiom
annotated source: L-tryptophyl quinone
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-3-(6,7-dioxo-1H-indol-3-yl)propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-tryptophyl quinone
annotated property: has_exact_synonym
annotated target: 2-amino-3-(6,7-dioxo-6,7-dihydro-1H-indol-3-yl)-propionic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-tryptophyl quinone
annotated property: has_exact_synonym
annotated target: 3-[(2S)-2-amino-2-carboxyethyl]-6,7-indolinedione
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-tryptophyl quinone
annotated property: has_exact_synonym
annotated target: 6,7 Dione (from Tryptophan)
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: L-tryptophyl quinone
annotated property: has_exact_synonym
annotated target: L-tryptophyl quinone
has_synonym_type: Name from RESID

Axiom
annotated source: L-tryptophyl quinone
annotated property: has_exact_synonym
annotated target: MOD_RES Tryptophylquinone
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-tryptophyl quinone
annotated property: has_exact_synonym
annotated target: N-(3-carboxy-1-oxopropyl)-L-tryptophan
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-tryptophyl quinone
annotated property: has_exact_synonym
annotated target: TrpQ
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-tryptophyl quinone
annotated property: has_related_synonym
annotated target: Quinone
has_synonym_type: Agreed label from MS community

Axiom
annotated source: L-tryptophyl quinone
annotated property: has_related_synonym
annotated target: quinone
has_synonym_type: Description (full_name) from Unimod

4'-(L-tryptophan)-L-tryptophyl quinone
type: Class
subclass of: MOD_00692
subclass of: MOD_02057
definition: A protein modification that effectively cross-links two L-tryptophan residues by a carbon-carbon bond to form 4'-(L-tryptophan)-L-tryptophyl quinone.
diff avg: 27.97
diff formula: C 0 H -4 N 0 O 2
diff mono: 27.958529
formula: C 22 H 16 N 4 O 4
mass avg: 400.39
mass mono: 400.11716
origin: W, W
source: natural
database_cross_reference: uniprot.ptm:PTM-0298
has_exact_synonym: 2,4-BisTrp-6,7-dione (from Tryptophan)
has_exact_synonym: 2-amino-3-[2-[2-amino-3-(2-carboxyethyl)-6,7-dioxo-1H-indol-4-yl]-1H-indol-3-yl]propanoic acid
has_exact_synonym: 3-[(2S)-2-amino-2-carboxyethyl]-4-(3-[(2S)-2-amino-2-carboxyethyl]-1H-indol-2-yl)-6,7-indolinedione
has_exact_synonym: 4'-tryptophan-tryptophylquinone
has_exact_synonym: 4-(2'-tryptophyl)tryptophan-6,7-dione
has_exact_synonym: 4-(L-tryptophan-2-yl)-L-tryptophyl quinone
has_exact_synonym: CROSSLNK Tryptophan tryptophylquinone (Trp-Trp)
has_exact_synonym: TTQ
has_exact_synonym: XLNK-4'Trp-TrpQ
has_exact_synonym: alpha,alpha'-diamino-6',7'-dihydro-6',7'-dioxo-(2,4'-bi-1H-indole)-3,3'-dipropanoic acid
has_obo_namespace: PSI-MOD
id: MOD:00158
in_subset: PSI-MOD-slim
comment: Cross-link 2; secondary to RESID:AA0148; From DeltaMass: Average Mass: 28.

Axiom
annotated source: 4'-(L-tryptophan)-L-tryptophyl quinone
annotated property: definition
annotated target: A protein modification that effectively cross-links two L-tryptophan residues by a carbon-carbon bond to form 4'-(L-tryptophan)-L-tryptophyl quinone.
database_cross_reference: ChEBI:20251
database_cross_reference: DeltaMass:0
database_cross_reference: PubMed:2028257
database_cross_reference: RESID:AA0149

Axiom
annotated source: 4'-(L-tryptophan)-L-tryptophyl quinone
annotated property: has_exact_synonym
annotated target: 2,4-BisTrp-6,7-dione (from Tryptophan)
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: 4'-(L-tryptophan)-L-tryptophyl quinone
annotated property: has_exact_synonym
annotated target: 2-amino-3-[2-[2-amino-3-(2-carboxyethyl)-6,7-dioxo-1H-indol-4-yl]-1H-indol-3-yl]propanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 4'-(L-tryptophan)-L-tryptophyl quinone
annotated property: has_exact_synonym
annotated target: 3-[(2S)-2-amino-2-carboxyethyl]-4-(3-[(2S)-2-amino-2-carboxyethyl]-1H-indol-2-yl)-6,7-indolinedione
has_synonym_type: Systematic name from RESID

Axiom
annotated source: 4'-(L-tryptophan)-L-tryptophyl quinone
annotated property: has_exact_synonym
annotated target: 4'-tryptophan-tryptophylquinone
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 4'-(L-tryptophan)-L-tryptophyl quinone
annotated property: has_exact_synonym
annotated target: 4-(2'-tryptophyl)tryptophan-6,7-dione
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 4'-(L-tryptophan)-L-tryptophyl quinone
annotated property: has_exact_synonym
annotated target: 4-(L-tryptophan-2-yl)-L-tryptophyl quinone
has_synonym_type: Name from RESID

Axiom
annotated source: 4'-(L-tryptophan)-L-tryptophyl quinone
annotated property: has_exact_synonym
annotated target: CROSSLNK Tryptophan tryptophylquinone (Trp-Trp)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: 4'-(L-tryptophan)-L-tryptophyl quinone
annotated property: has_exact_synonym
annotated target: TTQ
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 4'-(L-tryptophan)-L-tryptophyl quinone
annotated property: has_exact_synonym
annotated target: XLNK-4'Trp-TrpQ
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: 4'-(L-tryptophan)-L-tryptophyl quinone
annotated property: has_exact_synonym
annotated target: alpha,alpha'-diamino-6',7'-dihydro-6',7'-dioxo-(2,4'-bi-1H-indole)-3,3'-dipropanoic acid
has_synonym_type: Alternate name from RESID

O-phosphopantetheine-L-serine
type: Class
subclass of: MOD_00861
subclass of: MOD_00916
definition: A protein modification that effectively converts an L-serine residue to O-phosphopantetheine-L-serine.
diff avg: 340.33
diff formula: C 11 H 21 N 2 O 6 P 1 S 1
diff mono: 340.0858
formula: C 14 H 26 N 3 O 8 P 1 S 1
mass avg: 427.41
mass mono: 427.11783
origin: S
source: natural
database_cross_reference: Unimod:49
database_cross_reference: uniprot.ptm:PTM-0391
has_exact_synonym: (2R)-2-hydroxy-3,3-dimethyl-4-[(2S)-2-amino-2-carboxyethyl]phosphonato-N-(3-oxo-3-[(2-sulfanylethyl)amino]propyl)butanamide
has_exact_synonym: 4'-Phosphopantetheine
has_exact_synonym: MOD_RES O-(pantetheine 4'-phosphoryl)serine
has_exact_synonym: O-phosphopantetheine-L-serine
has_exact_synonym: OPpantSer
has_obo_namespace: PSI-MOD
has_related_synonym: Phosphopantetheine
id: MOD:00159
in_subset: PSI-MOD-slim
comment: Unimod has DiffFormula C 11 H 20 N 2 O 6 P 1 S 1 From DeltaMass: Average Mass: 339

Axiom
annotated source: O-phosphopantetheine-L-serine
annotated property: definition
annotated target: A protein modification that effectively converts an L-serine residue to O-phosphopantetheine-L-serine.
database_cross_reference: DeltaMass:0
database_cross_reference: PubMed:10320345
database_cross_reference: PubMed:10997907
database_cross_reference: PubMed:12057197
database_cross_reference: PubMed:12869567
database_cross_reference: PubMed:4568609
database_cross_reference: RESID:AA0150
database_cross_reference: Unimod:49#S

Axiom
annotated source: O-phosphopantetheine-L-serine
annotated property: has_exact_synonym
annotated target: (2R)-2-hydroxy-3,3-dimethyl-4-[(2S)-2-amino-2-carboxyethyl]phosphonato-N-(3-oxo-3-[(2-sulfanylethyl)amino]propyl)butanamide
has_synonym_type: Systematic name from RESID

Axiom
annotated source: O-phosphopantetheine-L-serine
annotated property: has_exact_synonym
annotated target: 4'-Phosphopantetheine
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: O-phosphopantetheine-L-serine
annotated property: has_exact_synonym
annotated target: MOD_RES O-(pantetheine 4'-phosphoryl)serine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: O-phosphopantetheine-L-serine
annotated property: has_exact_synonym
annotated target: O-phosphopantetheine-L-serine
has_synonym_type: Name from RESID

Axiom
annotated source: O-phosphopantetheine-L-serine
annotated property: has_exact_synonym
annotated target: OPpantSer
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: O-phosphopantetheine-L-serine
annotated property: has_related_synonym
annotated target: Phosphopantetheine
has_synonym_type: Agreed label from MS community

Axiom
annotated source: O-phosphopantetheine-L-serine
annotated property: has_related_synonym
annotated target: Phosphopantetheine
has_synonym_type: Description (full_name) from Unimod

N4-glycosyl-L-asparagine
type: Class
subclass of: N-glycosylated residue
subclass of: MOD_00903
definition: A protein modification that effectively converts an L-asparagine residue to an N4-glycosyl-L-asparagine.
origin: N
source: natural
has_exact_synonym: N4GlycoAsn
has_obo_namespace: PSI-MOD
id: MOD:00160
in_subset: PSI-MOD-slim

Axiom
annotated source: N4-glycosyl-L-asparagine
annotated property: definition
annotated target: A protein modification that effectively converts an L-asparagine residue to an N4-glycosyl-L-asparagine.
database_cross_reference: PubMed:111247
database_cross_reference: PubMed:1694179
database_cross_reference: PubMed:5490222
database_cross_reference: RESID:AA0151#var

Axiom
annotated source: N4-glycosyl-L-asparagine
annotated property: has_exact_synonym
annotated target: N4GlycoAsn
has_synonym_type: Short label curated by PSI-MOD

S-glucosyl-L-cysteine
type: Class
subclass of: S-glycosylated residue
subclass of: monoglucosylated residue
subclass of: MOD_00905
definition: A protein modification that effectively converts an L-cysteine residue to S-glucosylated L-cysteine.
diff avg: 162.14
diff formula: C 6 H 10 N 0 O 5 S 0
diff mono: 162.05283
formula: C 9 H 15 N 1 O 6 S 1
mass avg: 265.28
mass mono: 265.062
origin: C
source: natural
database_cross_reference: Unimod:41
database_cross_reference: uniprot.ptm:PTM-0626
has_exact_synonym: (2R)-2-amino-3-[(beta-D-glucopyranosyl)sulfanyl]propanoic acid
has_exact_synonym: CARBOHYD S-linked (Glc) cysteine
has_exact_synonym: S-(beta-D-glucopyranosyl)cysteine
has_exact_synonym: S-glucosyl-L-cysteine
has_exact_synonym: S-glycosyl-cysteine
has_exact_synonym: SGlcCys
has_obo_namespace: PSI-MOD
has_related_synonym: Hex
has_related_synonym: Hexose
id: MOD:00161

Axiom
annotated source: S-glucosyl-L-cysteine
annotated property: definition
annotated target: A protein modification that effectively converts an L-cysteine residue to S-glucosylated L-cysteine.
database_cross_reference: PubMed:1145128
database_cross_reference: PubMed:15279557
database_cross_reference: PubMed:5286858
database_cross_reference: RESID:AA0152
database_cross_reference: Unimod:41#C

Axiom
annotated source: S-glucosyl-L-cysteine
annotated property: has_exact_synonym
annotated target: (2R)-2-amino-3-[(beta-D-glucopyranosyl)sulfanyl]propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: S-glucosyl-L-cysteine
annotated property: has_exact_synonym
annotated target: CARBOHYD S-linked (Glc) cysteine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: S-glucosyl-L-cysteine
annotated property: has_exact_synonym
annotated target: S-(beta-D-glucopyranosyl)cysteine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-glucosyl-L-cysteine
annotated property: has_exact_synonym
annotated target: S-glucosyl-L-cysteine
has_synonym_type: Name from RESID

Axiom
annotated source: S-glucosyl-L-cysteine
annotated property: has_exact_synonym
annotated target: S-glycosyl-cysteine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-glucosyl-L-cysteine
annotated property: has_exact_synonym
annotated target: SGlcCys
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: S-glucosyl-L-cysteine
annotated property: has_related_synonym
annotated target: Hex
has_synonym_type: Agreed label from MS community

Axiom
annotated source: S-glucosyl-L-cysteine
annotated property: has_related_synonym
annotated target: Hexose
has_synonym_type: Description (full_name) from Unimod

O5-glucosylgalactosyl-L-hydroxylysine
type: Class
subclass of: O-glycosylated residue
subclass of: MOD_00912
subclass of: Restriction
  on property: derives from
  some values from: 5-hydroxy-L-lysine
definition: A protein modification that effectively converts an L-lysine residue to O5-glucosylgalactosyl-L-hydroxylysine.
diff avg: 340.28
diff formula: C 12 H 20 N 0 O 11
diff mono: 340.10056
formula: C 18 H 32 N 2 O 12
mass avg: 468.46
mass mono: 468.19553
origin: K
source: natural
database_cross_reference: Unimod:393
has_exact_synonym: (2S,5R)-2,6-diamino-5-[2-O-(alpha-D-glucopyranosyl)-beta-D-galactopyranosyloxy]hexanoic acid
has_exact_synonym: 5-(2-O-alpha-D-glucopyranosyl-beta-D-galactopyranosyl)oxy-L-lysine
has_exact_synonym: O5-glucosylgalactosyl-L-hydroxylysine
has_exact_synonym: OGlcGal5HyLys
has_obo_namespace: PSI-MOD
has_related_synonym: Glucosylgalactosyl
has_related_synonym: glucosylgalactosyl hydroxylysine
id: MOD:00162
in_subset: PSI-MOD-slim
comment: Secondary to RESID:AA0028.

Axiom
annotated source: O5-glucosylgalactosyl-L-hydroxylysine
annotated property: definition
annotated target: A protein modification that effectively converts an L-lysine residue to O5-glucosylgalactosyl-L-hydroxylysine.
database_cross_reference: PubMed:15149698
database_cross_reference: PubMed:4288358
database_cross_reference: PubMed:4319110
database_cross_reference: RESID:AA0153
database_cross_reference: Unimod:393

Axiom
annotated source: O5-glucosylgalactosyl-L-hydroxylysine
annotated property: has_exact_synonym
annotated target: (2S,5R)-2,6-diamino-5-[2-O-(alpha-D-glucopyranosyl)-beta-D-galactopyranosyloxy]hexanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: O5-glucosylgalactosyl-L-hydroxylysine
annotated property: has_exact_synonym
annotated target: 5-(2-O-alpha-D-glucopyranosyl-beta-D-galactopyranosyl)oxy-L-lysine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O5-glucosylgalactosyl-L-hydroxylysine
annotated property: has_exact_synonym
annotated target: O5-glucosylgalactosyl-L-hydroxylysine
has_synonym_type: Name from RESID

Axiom
annotated source: O5-glucosylgalactosyl-L-hydroxylysine
annotated property: has_exact_synonym
annotated target: OGlcGal5HyLys
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: O5-glucosylgalactosyl-L-hydroxylysine
annotated property: has_related_synonym
annotated target: Glucosylgalactosyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: O5-glucosylgalactosyl-L-hydroxylysine
annotated property: has_related_synonym
annotated target: glucosylgalactosyl hydroxylysine
has_synonym_type: Description (full_name) from Unimod

O-(N-acetylamino)galactosyl-L-serine
type: Class
subclass of: mono-N-acetylaminogalactosylated residue
subclass of: MOD_01675
definition: A protein modification that effectively converts an L-serine residue to O-(N-acetylaminogalactosyl)-L-serine.
diff avg: 203.19
diff formula: C 8 H 13 N 1 O 5
diff mono: 203.07938
formula: C 11 H 18 N 2 O 7
mass avg: 290.27
mass mono: 290.1114
origin: S
source: natural
database_cross_reference: uniprot.ptm:PTM-0564
has_exact_synonym: (2S)-2-amino-3-(2-acetamido-2-deoxy-alpha-D-galactopyranosyloxy)propanoic acid
has_exact_synonym: CARBOHYD O-linked (GalNAc) serine
has_exact_synonym: O-(N-acetylamino)galactosyl-L-serine
has_exact_synonym: O3-(N-acetylgalactosaminyl)serine
has_exact_synonym: OGalNAcSer
has_exact_synonym: mucin type O-glycosylserine
has_obo_namespace: PSI-MOD
has_related_synonym: HexNAc
id: MOD:00163
in_subset: PSI-MOD-slim

Axiom
annotated source: O-(N-acetylamino)galactosyl-L-serine
annotated property: definition
annotated target: A protein modification that effectively converts an L-serine residue to O-(N-acetylaminogalactosyl)-L-serine.
database_cross_reference: PubMed:115869
database_cross_reference: PubMed:16005634
database_cross_reference: PubMed:3086323
database_cross_reference: PubMed:8948436
database_cross_reference: PubMed:9092502
database_cross_reference: RESID:AA0154

Axiom
annotated source: O-(N-acetylamino)galactosyl-L-serine
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-3-(2-acetamido-2-deoxy-alpha-D-galactopyranosyloxy)propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: O-(N-acetylamino)galactosyl-L-serine
annotated property: has_exact_synonym
annotated target: CARBOHYD O-linked (GalNAc) serine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: O-(N-acetylamino)galactosyl-L-serine
annotated property: has_exact_synonym
annotated target: O-(N-acetylamino)galactosyl-L-serine
has_synonym_type: Name from RESID

Axiom
annotated source: O-(N-acetylamino)galactosyl-L-serine
annotated property: has_exact_synonym
annotated target: O3-(N-acetylgalactosaminyl)serine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-(N-acetylamino)galactosyl-L-serine
annotated property: has_exact_synonym
annotated target: OGalNAcSer
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: O-(N-acetylamino)galactosyl-L-serine
annotated property: has_exact_synonym
annotated target: mucin type O-glycosylserine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-(N-acetylamino)galactosyl-L-serine
annotated property: has_related_synonym
annotated target: HexNAc
has_synonym_type: Agreed label from MS community

O-(N-acetylamino)galactosyl-L-threonine
type: Class
subclass of: mono-N-acetylaminogalactosylated residue
subclass of: MOD_01676
definition: A protein modification that effectively converts an L-asparagine residue to O-(N-acetylaminogalactosyl)-L-threonine.
diff avg: 203.19
diff formula: C 8 H 13 N 1 O 5
diff mono: 203.07938
formula: C 12 H 20 N 2 O 7
mass avg: 304.3
mass mono: 304.12704
origin: T
source: natural
database_cross_reference: uniprot.ptm:PTM-0567
has_exact_synonym: (2S,3R)-2-amino-3-(2-acetamido-2-deoxy-alpha-D-galactopyranosyloxy)butanoic acid
has_exact_synonym: CARBOHYD O-linked (GalNAc) threonine
has_exact_synonym: CARBOHYD O-linked (HexNAc)
has_exact_synonym: O-(N-acetylamino)galactosyl-L-threonine
has_exact_synonym: O3-(N-acetylgalactosaminyl)threonine
has_exact_synonym: OGalNAcThr
has_exact_synonym: mucin type O-glycosylthreonine
has_obo_namespace: PSI-MOD
has_related_synonym: HexNAc
id: MOD:00164
in_subset: PSI-MOD-slim

Axiom
annotated source: O-(N-acetylamino)galactosyl-L-threonine
annotated property: definition
annotated target: A protein modification that effectively converts an L-asparagine residue to O-(N-acetylaminogalactosyl)-L-threonine.
database_cross_reference: PubMed:16005634
database_cross_reference: PubMed:1997327
database_cross_reference: PubMed:3086323
database_cross_reference: PubMed:8948436
database_cross_reference: PubMed:9092502
database_cross_reference: RESID:AA0155

Axiom
annotated source: O-(N-acetylamino)galactosyl-L-threonine
annotated property: has_exact_synonym
annotated target: (2S,3R)-2-amino-3-(2-acetamido-2-deoxy-alpha-D-galactopyranosyloxy)butanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: O-(N-acetylamino)galactosyl-L-threonine
annotated property: has_exact_synonym
annotated target: CARBOHYD O-linked (GalNAc) threonine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: O-(N-acetylamino)galactosyl-L-threonine
annotated property: has_exact_synonym
annotated target: CARBOHYD O-linked (HexNAc)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: O-(N-acetylamino)galactosyl-L-threonine
annotated property: has_exact_synonym
annotated target: O-(N-acetylamino)galactosyl-L-threonine
has_synonym_type: Name from RESID

Axiom
annotated source: O-(N-acetylamino)galactosyl-L-threonine
annotated property: has_exact_synonym
annotated target: O3-(N-acetylgalactosaminyl)threonine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-(N-acetylamino)galactosyl-L-threonine
annotated property: has_exact_synonym
annotated target: OGalNAcThr
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: O-(N-acetylamino)galactosyl-L-threonine
annotated property: has_exact_synonym
annotated target: mucin type O-glycosylthreonine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-(N-acetylamino)galactosyl-L-threonine
annotated property: has_related_synonym
annotated target: HexNAc
has_synonym_type: Agreed label from MS community

1'-mannosyl-L-tryptophan
type: Class
subclass of: N-glycosylated residue
subclass of: monomannosylated residue
subclass of: MOD_00918
definition: A protein modification that effectively converts an L-tryptophan residue to 1'-mannosyl-L-tryptophan.
diff avg: 162.14
diff formula: C 6 H 10 N 0 O 5
diff mono: 162.05283
formula: C 17 H 20 N 2 O 6
mass avg: 348.36
mass mono: 348.13214
origin: W
source: natural
database_cross_reference: uniprot.ptm:PTM-0535
has_exact_synonym: (2S)-2-amino-3-(1-D-mannopyranosyloxy-1H-indol-3-yl)propanoic acid
has_exact_synonym: 1'-glycosyl-L-tryptophan
has_exact_synonym: 1'-mannosyl-L-tryptophan
has_exact_synonym: CARBOHYD N-linked (Man) tryptophan
has_exact_synonym: N-mannosyl-tryptophan
has_exact_synonym: N1'ManTrp
has_exact_synonym: N1-mannosyl-tryptophan
has_obo_namespace: PSI-MOD
id: MOD:00165
in_subset: PSI-MOD-slim

Axiom
annotated source: 1'-mannosyl-L-tryptophan
annotated property: definition
annotated target: A protein modification that effectively converts an L-tryptophan residue to 1'-mannosyl-L-tryptophan.
database_cross_reference: PubMed:1482345
database_cross_reference: PubMed:16150691
database_cross_reference: RESID:AA0156

Axiom
annotated source: 1'-mannosyl-L-tryptophan
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-3-(1-D-mannopyranosyloxy-1H-indol-3-yl)propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: 1'-mannosyl-L-tryptophan
annotated property: has_exact_synonym
annotated target: 1'-glycosyl-L-tryptophan
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 1'-mannosyl-L-tryptophan
annotated property: has_exact_synonym
annotated target: 1'-mannosyl-L-tryptophan
has_synonym_type: Name from RESID

Axiom
annotated source: 1'-mannosyl-L-tryptophan
annotated property: has_exact_synonym
annotated target: CARBOHYD N-linked (Man) tryptophan
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: 1'-mannosyl-L-tryptophan
annotated property: has_exact_synonym
annotated target: N-mannosyl-tryptophan
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 1'-mannosyl-L-tryptophan
annotated property: has_exact_synonym
annotated target: N1'ManTrp
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: 1'-mannosyl-L-tryptophan
annotated property: has_exact_synonym
annotated target: N1-mannosyl-tryptophan
has_synonym_type: Alternate name from RESID

O4'-glucosyl-L-tyrosine
type: Class
subclass of: monoglucosylated residue
subclass of: MOD_01927
definition: A protein modification that effectively converts an L-tyrosine residue to O4'-glucosyl-tyrosine.
diff avg: 162.14
diff formula: C 6 H 10 N 0 O 5
diff mono: 162.05283
formula: C 15 H 19 N 1 O 7
mass avg: 325.32
mass mono: 325.11615
origin: Y
source: natural
database_cross_reference: Unimod:41
database_cross_reference: uniprot.ptm:PTM-0575
has_exact_synonym: (2S)-2-amino-3-(4-alpha-D-glucopyranosyloxy)phenylpropanoic acid
has_exact_synonym: CARBOHYD O-linked (Glc) tyrosine
has_exact_synonym: O4'-glucosyl-L-tyrosine
has_exact_synonym: O4'-glycosyl-L-tyrosine
has_exact_synonym: O4GlcTyr
has_obo_namespace: PSI-MOD
has_related_synonym: Hex
has_related_synonym: Hexose
id: MOD:00166

Axiom
annotated source: O4'-glucosyl-L-tyrosine
annotated property: definition
annotated target: A protein modification that effectively converts an L-tyrosine residue to O4'-glucosyl-tyrosine.
database_cross_reference: PubMed:15279557
database_cross_reference: PubMed:3181138
database_cross_reference: RESID:AA0157
database_cross_reference: Unimod:41#Y

Axiom
annotated source: O4'-glucosyl-L-tyrosine
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-3-(4-alpha-D-glucopyranosyloxy)phenylpropanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: O4'-glucosyl-L-tyrosine
annotated property: has_exact_synonym
annotated target: CARBOHYD O-linked (Glc) tyrosine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: O4'-glucosyl-L-tyrosine
annotated property: has_exact_synonym
annotated target: O4'-glucosyl-L-tyrosine
has_synonym_type: Name from RESID

Axiom
annotated source: O4'-glucosyl-L-tyrosine
annotated property: has_exact_synonym
annotated target: O4'-glycosyl-L-tyrosine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O4'-glucosyl-L-tyrosine
annotated property: has_exact_synonym
annotated target: O4GlcTyr
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: O4'-glucosyl-L-tyrosine
annotated property: has_related_synonym
annotated target: Hex
has_synonym_type: Agreed label from MS community

Axiom
annotated source: O4'-glucosyl-L-tyrosine
annotated property: has_related_synonym
annotated target: Hexose
has_synonym_type: Description (full_name) from Unimod

N-asparaginyl-glycosylphosphatidylinositolethanolamine
type: Class
subclass of: MOD_00818
subclass of: MOD_00903
definition: A protein modification that effectively converts an L-asparagine residue to N-asparaginyl-glycosylphosphatidylinositolethanolamine.
diff avg: 123.05
diff formula: C 2 H 6 N 1 O 3 P 1
diff mono: 123.00853
formula: C 6 H 13 N 3 O 6 P 1
mass avg: 254.16
mass mono: 254.0542
origin: N
source: natural
term spec: C-term
database_cross_reference: uniprot.ptm:PTM-0137
has_exact_synonym: GPIAsn
has_exact_synonym: LIPID GPI-anchor amidated asparagine
has_exact_synonym: N-asparaginyl-glycosylphosphatidylinositolethanolamine
has_obo_namespace: PSI-MOD
id: MOD:00167

Axiom
annotated source: N-asparaginyl-glycosylphosphatidylinositolethanolamine
annotated property: definition
annotated target: A protein modification that effectively converts an L-asparagine residue to N-asparaginyl-glycosylphosphatidylinositolethanolamine.
database_cross_reference: PubMed:1824714
database_cross_reference: PubMed:8276756
database_cross_reference: RESID:AA0158

Axiom
annotated source: N-asparaginyl-glycosylphosphatidylinositolethanolamine
annotated property: has_exact_synonym
annotated target: GPIAsn
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: N-asparaginyl-glycosylphosphatidylinositolethanolamine
annotated property: has_exact_synonym
annotated target: LIPID GPI-anchor amidated asparagine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N-asparaginyl-glycosylphosphatidylinositolethanolamine
annotated property: has_exact_synonym
annotated target: N-asparaginyl-glycosylphosphatidylinositolethanolamine
has_synonym_type: Name from RESID

N-aspartyl-glycosylphosphatidylinositolethanolamine
type: Class
subclass of: MOD_00818
subclass of: MOD_00904
definition: A protein modification that effectively converts an L-aspartic acid residue to N-(aspart-1-yl)-glycosylphosphatidylinositolethanolamine.
diff avg: 123.05
diff formula: C 2 H 6 N 1 O 3 P 1
diff mono: 123.00853
formula: C 6 H 12 N 2 O 7 P 1
mass avg: 255.14
mass mono: 255.03821
origin: D
source: natural
term spec: C-term
database_cross_reference: uniprot.ptm:PTM-0138
has_exact_synonym: GPIAsp
has_exact_synonym: LIPID GPI-anchor amidated aspartate
has_exact_synonym: N-aspartyl-glycosylphosphatidylinositolethanolamine
has_obo_namespace: PSI-MOD
id: MOD:00168

Axiom
annotated source: N-aspartyl-glycosylphosphatidylinositolethanolamine
annotated property: definition
annotated target: A protein modification that effectively converts an L-aspartic acid residue to N-(aspart-1-yl)-glycosylphosphatidylinositolethanolamine.
database_cross_reference: PubMed:7120400
database_cross_reference: RESID:AA0159

Axiom
annotated source: N-aspartyl-glycosylphosphatidylinositolethanolamine
annotated property: has_exact_synonym
annotated target: GPIAsp
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: N-aspartyl-glycosylphosphatidylinositolethanolamine
annotated property: has_exact_synonym
annotated target: LIPID GPI-anchor amidated aspartate
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N-aspartyl-glycosylphosphatidylinositolethanolamine
annotated property: has_exact_synonym
annotated target: N-aspartyl-glycosylphosphatidylinositolethanolamine
has_synonym_type: Name from RESID

N-cysteinyl-glycosylphosphatidylinositolethanolamine
type: Class
subclass of: MOD_00818
subclass of: MOD_00905
definition: A protein modification that effectively converts an L-cysteine residue to N-cysteinyl-glycosylphosphatidylinositolethanolamine.
diff avg: 123.05
diff formula: C 2 H 6 N 1 O 3 P 1 S 0
diff mono: 123.00853
formula: C 5 H 12 N 2 O 5 P 1 S 1
mass avg: 243.19
mass mono: 243.02045
origin: C
source: natural
term spec: C-term
database_cross_reference: uniprot.ptm:PTM-0140
has_exact_synonym: GPICys
has_exact_synonym: LIPID GPI-anchor amidated cysteine
has_exact_synonym: N-cysteinyl-glycosylphosphatidylinositolethanolamine
has_obo_namespace: PSI-MOD
id: MOD:00169

Axiom
annotated source: N-cysteinyl-glycosylphosphatidylinositolethanolamine
annotated property: definition
annotated target: A protein modification that effectively converts an L-cysteine residue to N-cysteinyl-glycosylphosphatidylinositolethanolamine.
database_cross_reference: PubMed:2897081
database_cross_reference: RESID:AA0160

Axiom
annotated source: N-cysteinyl-glycosylphosphatidylinositolethanolamine
annotated property: has_exact_synonym
annotated target: GPICys
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: N-cysteinyl-glycosylphosphatidylinositolethanolamine
annotated property: has_exact_synonym
annotated target: LIPID GPI-anchor amidated cysteine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N-cysteinyl-glycosylphosphatidylinositolethanolamine
annotated property: has_exact_synonym
annotated target: N-cysteinyl-glycosylphosphatidylinositolethanolamine
has_synonym_type: Name from RESID

N-glycyl-glycosylphosphatidylinositolethanolamine
type: Class
subclass of: MOD_00818
subclass of: MOD_00908
definition: A protein modification that effectively converts a glycine residue to N-glycyl-glycosylphosphatidylinositolethanolamine.
diff avg: 123.05
diff formula: C 2 H 6 N 1 O 3 P 1
diff mono: 123.00853
formula: C 4 H 10 N 2 O 5 P 1
mass avg: 197.11
mass mono: 197.03273
origin: G
source: natural
term spec: C-term
database_cross_reference: uniprot.ptm:PTM-0141
has_exact_synonym: GPIGly
has_exact_synonym: LIPID GPI-anchor amidated glycine
has_exact_synonym: N-glycyl-glycosylphosphatidylinositolethanolamine
has_obo_namespace: PSI-MOD
id: MOD:00170

Axiom
annotated source: N-glycyl-glycosylphosphatidylinositolethanolamine
annotated property: definition
annotated target: A protein modification that effectively converts a glycine residue to N-glycyl-glycosylphosphatidylinositolethanolamine.
database_cross_reference: PubMed:2341397
database_cross_reference: RESID:AA0161

Axiom
annotated source: N-glycyl-glycosylphosphatidylinositolethanolamine
annotated property: has_exact_synonym
annotated target: GPIGly
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: N-glycyl-glycosylphosphatidylinositolethanolamine
annotated property: has_exact_synonym
annotated target: LIPID GPI-anchor amidated glycine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N-glycyl-glycosylphosphatidylinositolethanolamine
annotated property: has_exact_synonym
annotated target: N-glycyl-glycosylphosphatidylinositolethanolamine
has_synonym_type: Name from RESID

N-seryl-glycosylphosphatidylinositolethanolamine
type: Class
subclass of: MOD_00818
subclass of: MOD_00916
definition: A protein modification that effectively converts an L-serine residue to N-seryl-glycosylphosphatidylinositolethanolamine.
diff avg: 123.05
diff formula: C 2 H 6 N 1 O 3 P 1
diff mono: 123.00853
formula: C 5 H 12 N 2 O 6 P 1
mass avg: 227.13
mass mono: 227.0433
origin: S
source: natural
term spec: C-term
database_cross_reference: uniprot.ptm:PTM-0142
has_exact_synonym: GPISer
has_exact_synonym: LIPID GPI-anchor amidated serine
has_exact_synonym: N-seryl-glycosylphosphatidylinositolethanolamine
has_obo_namespace: PSI-MOD
id: MOD:00171

Axiom
annotated source: N-seryl-glycosylphosphatidylinositolethanolamine
annotated property: definition
annotated target: A protein modification that effectively converts an L-serine residue to N-seryl-glycosylphosphatidylinositolethanolamine.
database_cross_reference: PubMed:2111324
database_cross_reference: PubMed:8448158
database_cross_reference: RESID:AA0162

Axiom
annotated source: N-seryl-glycosylphosphatidylinositolethanolamine
annotated property: has_exact_synonym
annotated target: GPISer
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: N-seryl-glycosylphosphatidylinositolethanolamine
annotated property: has_exact_synonym
annotated target: LIPID GPI-anchor amidated serine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N-seryl-glycosylphosphatidylinositolethanolamine
annotated property: has_exact_synonym
annotated target: N-seryl-glycosylphosphatidylinositolethanolamine
has_synonym_type: Name from RESID

N-alanyl-glycosylphosphatidylinositolethanolamine
type: Class
subclass of: MOD_00818
subclass of: MOD_00901
definition: A protein modification that effectively converts an L-alanine residue to N-alanyl-glycosylphosphatidylinositolethanolamine.
diff avg: 123.05
diff formula: C 2 H 6 N 1 O 3 P 1
diff mono: 123.00853
formula: C 5 H 12 N 2 O 5 P 1
mass avg: 211.13
mass mono: 211.04839
origin: A
source: natural
term spec: C-term
database_cross_reference: uniprot.ptm:PTM-0136
has_exact_synonym: GPIAla
has_exact_synonym: LIPID GPI-anchor amidated alanine
has_exact_synonym: N-alanyl-glycosylphosphatidylinositolethanolamine
has_obo_namespace: PSI-MOD
id: MOD:00172

Axiom
annotated source: N-alanyl-glycosylphosphatidylinositolethanolamine
annotated property: definition
annotated target: A protein modification that effectively converts an L-alanine residue to N-alanyl-glycosylphosphatidylinositolethanolamine.
database_cross_reference: PubMed:7682556
database_cross_reference: PubMed:7744038
database_cross_reference: RESID:AA0163

Axiom
annotated source: N-alanyl-glycosylphosphatidylinositolethanolamine
annotated property: has_exact_synonym
annotated target: GPIAla
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: N-alanyl-glycosylphosphatidylinositolethanolamine
annotated property: has_exact_synonym
annotated target: LIPID GPI-anchor amidated alanine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N-alanyl-glycosylphosphatidylinositolethanolamine
annotated property: has_exact_synonym
annotated target: N-alanyl-glycosylphosphatidylinositolethanolamine
has_synonym_type: Name from RESID

N-threonyl-glycosylphosphatidylinositolethanolamine
type: Class
subclass of: MOD_00818
subclass of: MOD_00917
definition: A protein modification that effectively converts an L-threonine residue to N-threonyl-glycosylphosphatidylinositolethanolamine.
diff avg: 123.05
diff formula: C 2 H 6 N 1 O 3 P 1
diff mono: 123.00853
formula: C 6 H 14 N 2 O 6 P 1
mass avg: 241.16
mass mono: 241.05894
origin: T
source: hypothetical
term spec: C-term
database_cross_reference: uniprot.ptm:PTM-0143
has_exact_synonym: GPIThr
has_exact_synonym: LIPID GPI-anchor amidated threonine
has_exact_synonym: N-threonyl-glycosylphosphatidylinositolethanolamine
has_obo_namespace: PSI-MOD
id: MOD:00173

Axiom
annotated source: N-threonyl-glycosylphosphatidylinositolethanolamine
annotated property: definition
annotated target: A protein modification that effectively converts an L-threonine residue to N-threonyl-glycosylphosphatidylinositolethanolamine.
database_cross_reference: RESID:AA0164

Axiom
annotated source: N-threonyl-glycosylphosphatidylinositolethanolamine
annotated property: has_exact_synonym
annotated target: GPIThr
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: N-threonyl-glycosylphosphatidylinositolethanolamine
annotated property: has_exact_synonym
annotated target: LIPID GPI-anchor amidated threonine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N-threonyl-glycosylphosphatidylinositolethanolamine
annotated property: has_exact_synonym
annotated target: N-threonyl-glycosylphosphatidylinositolethanolamine
has_synonym_type: Name from RESID

N-glycyl-glycosylsphingolipidinositolethanolamine
type: Class
subclass of: glycosylsphingolipidinositolated residue
subclass of: MOD_00908
definition: A protein modification that effectively converts a glycine residue to N-glycyl-glycosylsphingolipidinositolethanolamine.
diff avg: 123.05
diff formula: C 2 H 6 N 1 O 3 P 1
diff mono: 123.00853
formula: C 4 H 10 N 2 O 5 P 1
mass avg: 197.11
mass mono: 197.03273
origin: G
source: hypothetical
term spec: C-term
database_cross_reference: uniprot.ptm:PTM-0146
has_exact_synonym: GSIGly
has_exact_synonym: LIPID GPI-like-anchor amidated glycine
has_exact_synonym: N-glycyl-glycosylsphingolipidinositolethanolamine
has_obo_namespace: PSI-MOD
id: MOD:00174

Axiom
annotated source: N-glycyl-glycosylsphingolipidinositolethanolamine
annotated property: definition
annotated target: A protein modification that effectively converts a glycine residue to N-glycyl-glycosylsphingolipidinositolethanolamine.
database_cross_reference: PubMed:12626404
database_cross_reference: PubMed:8404891
database_cross_reference: RESID:AA0165

Axiom
annotated source: N-glycyl-glycosylsphingolipidinositolethanolamine
annotated property: has_exact_synonym
annotated target: GSIGly
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: N-glycyl-glycosylsphingolipidinositolethanolamine
annotated property: has_exact_synonym
annotated target: LIPID GPI-like-anchor amidated glycine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N-glycyl-glycosylsphingolipidinositolethanolamine
annotated property: has_exact_synonym
annotated target: N-glycyl-glycosylsphingolipidinositolethanolamine
has_synonym_type: Name from RESID

N-seryl-glycosylsphingolipidinositolethanolamine
type: Class
subclass of: glycosylsphingolipidinositolated residue
subclass of: MOD_00916
definition: A protein modification that effectively converts an L-serine residue to N-seryl-glycosylsphingolipidinositolethanolamine.
diff avg: 123.05
diff formula: C 2 H 6 N 1 O 3 P 1
diff mono: 123.00853
formula: C 5 H 12 N 2 O 6 P 1
mass avg: 227.13
mass mono: 227.0433
origin: S
source: natural
term spec: C-term
database_cross_reference: uniprot.ptm:PTM-0147
has_exact_synonym: GSISer
has_exact_synonym: LIPID GPI-like-anchor amidated serine
has_exact_synonym: N-seryl-glycosylsphingolipidinositolethanolamine
has_obo_namespace: PSI-MOD
id: MOD:00175

Axiom
annotated source: N-seryl-glycosylsphingolipidinositolethanolamine
annotated property: definition
annotated target: A protein modification that effectively converts an L-serine residue to N-seryl-glycosylsphingolipidinositolethanolamine.
database_cross_reference: PubMed:12626404
database_cross_reference: PubMed:2721485
database_cross_reference: PubMed:8269952
database_cross_reference: RESID:AA0166

Axiom
annotated source: N-seryl-glycosylsphingolipidinositolethanolamine
annotated property: has_exact_synonym
annotated target: GSISer
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: N-seryl-glycosylsphingolipidinositolethanolamine
annotated property: has_exact_synonym
annotated target: LIPID GPI-like-anchor amidated serine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N-seryl-glycosylsphingolipidinositolethanolamine
annotated property: has_exact_synonym
annotated target: N-seryl-glycosylsphingolipidinositolethanolamine
has_synonym_type: Name from RESID

O-(phosphoribosyl dephospho-coenzyme A)-L-serine
type: Class
subclass of: MOD_00860
subclass of: MOD_00861
subclass of: MOD_00916
definition: A protein modification that effectively converts an L-serine residue to O-(phosphoribosyl dephospho-coenzyme A)-L-serine.
diff avg: 881.63
diff formula: C 26 H 42 N 7 O 19 P 3 S 1
diff mono: 881.1469
formula: C 29 H 47 N 8 O 21 P 3 S 1
mass avg: 968.71
mass mono: 968.17896
origin: S
source: natural
database_cross_reference: Unimod:395
database_cross_reference: uniprot.ptm:PTM-0389
has_exact_synonym: MOD_RES O-(phosphoribosyl dephospho-coenzyme A)serine
has_exact_synonym: O-(phosphoribosyl dephospho-coenzyme A)-L-serine
has_exact_synonym: O3-(phosphate-5-ribosyl-alpha-2-adenosine-5-diphosphate pantetheine)-L-serine
has_exact_synonym: O3-(phosphoribosyl dephospho-coenzyme A)-L-serine
has_exact_synonym: O3-2'-(5''-phosphoribosyl-3'-dephosphocoenzyme A)-L-serine
has_exact_synonym: OPRibdPCoASer
has_obo_namespace: PSI-MOD
has_related_synonym: PhosphoribosyldephosphoCoA
has_related_synonym: phosphoribosyl dephospho-coenzyme A
id: MOD:00176
in_subset: PSI-MOD-slim
comment: pRibodePcoA

Axiom
annotated source: O-(phosphoribosyl dephospho-coenzyme A)-L-serine
annotated property: definition
annotated target: A protein modification that effectively converts an L-serine residue to O-(phosphoribosyl dephospho-coenzyme A)-L-serine.
database_cross_reference: PubMed:10924139
database_cross_reference: PubMed:11052675
database_cross_reference: PubMed:179809
database_cross_reference: PubMed:180526
database_cross_reference: PubMed:368065
database_cross_reference: RESID:AA0167
database_cross_reference: Unimod:395#S

Axiom
annotated source: O-(phosphoribosyl dephospho-coenzyme A)-L-serine
annotated property: has_exact_synonym
annotated target: MOD_RES O-(phosphoribosyl dephospho-coenzyme A)serine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: O-(phosphoribosyl dephospho-coenzyme A)-L-serine
annotated property: has_exact_synonym
annotated target: O-(phosphoribosyl dephospho-coenzyme A)-L-serine
has_synonym_type: Name from RESID

Axiom
annotated source: O-(phosphoribosyl dephospho-coenzyme A)-L-serine
annotated property: has_exact_synonym
annotated target: O3-(phosphate-5-ribosyl-alpha-2-adenosine-5-diphosphate pantetheine)-L-serine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-(phosphoribosyl dephospho-coenzyme A)-L-serine
annotated property: has_exact_synonym
annotated target: O3-(phosphoribosyl dephospho-coenzyme A)-L-serine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-(phosphoribosyl dephospho-coenzyme A)-L-serine
annotated property: has_exact_synonym
annotated target: O3-2'-(5''-phosphoribosyl-3'-dephosphocoenzyme A)-L-serine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-(phosphoribosyl dephospho-coenzyme A)-L-serine
annotated property: has_exact_synonym
annotated target: OPRibdPCoASer
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: O-(phosphoribosyl dephospho-coenzyme A)-L-serine
annotated property: has_related_synonym
annotated target: PhosphoribosyldephosphoCoA
has_synonym_type: Agreed label from MS community

Axiom
annotated source: O-(phosphoribosyl dephospho-coenzyme A)-L-serine
annotated property: has_related_synonym
annotated target: phosphoribosyl dephospho-coenzyme A
has_synonym_type: Description (full_name) from Unimod

omega-N-(ADP-ribosyl)-L-arginine
type: Class
subclass of: MOD_00752
subclass of: MOD_00902
definition: A protein modification that effectively converts an L-argininine residue to omega-N-(ADP-ribosyl)-L-arginine.
diff avg: 541.3
diff formula: C 15 H 21 N 5 O 13 P 2
diff mono: 541.0611
formula: C 21 H 33 N 9 O 14 P 2
mass avg: 697.49
mass mono: 697.16223
origin: R
source: natural
database_cross_reference: Unimod:213
database_cross_reference: uniprot.ptm:PTM-0053
has_exact_synonym: (S)-2-amino-5-([imino([adenosine 5'-(trihydrogen diphosphate) 5'->5'-ester with alpha-D-ribofuranosyl]amino)methyl]amino)pentanoic acid
has_exact_synonym: ADPRibArg
has_exact_synonym: MOD_RES ADP-ribosylarginine
has_exact_synonym: N(omega)-[alpha-D-ribofuranoside 5'->5'-ester with adenosine 5'-(trihydrogen diphosphate)]-L-arginine
has_exact_synonym: N(omega)-alpha-D-ribofuranosyl-L-arginine 5'->5'-ester with adenosine 5'-(trihydrogen diphosphate)
has_exact_synonym: N-(ADP-ribosyl)- (on Arginine)
has_exact_synonym: omega-N-(ADP-ribosyl)-L-arginine
has_obo_namespace: PSI-MOD
has_related_synonym: ADP Ribose addition
has_related_synonym: ADP-Ribosyl
id: MOD:00177
in_subset: PSI-MOD-slim
comment: From DeltaMass: Average Mass: 541.

Axiom
annotated source: omega-N-(ADP-ribosyl)-L-arginine
annotated property: definition
annotated target: A protein modification that effectively converts an L-argininine residue to omega-N-(ADP-ribosyl)-L-arginine.
database_cross_reference: DeltaMass:0
database_cross_reference: PubMed:15842200
database_cross_reference: PubMed:209022
database_cross_reference: PubMed:3090031
database_cross_reference: PubMed:3923473
database_cross_reference: PubMed:6582062
database_cross_reference: RESID:AA0168
database_cross_reference: Unimod:213#R

Axiom
annotated source: omega-N-(ADP-ribosyl)-L-arginine
annotated property: has_exact_synonym
annotated target: (S)-2-amino-5-([imino([adenosine 5'-(trihydrogen diphosphate) 5'->5'-ester with alpha-D-ribofuranosyl]amino)methyl]amino)pentanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: omega-N-(ADP-ribosyl)-L-arginine
annotated property: has_exact_synonym
annotated target: ADPRibArg
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: omega-N-(ADP-ribosyl)-L-arginine
annotated property: has_exact_synonym
annotated target: MOD_RES ADP-ribosylarginine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: omega-N-(ADP-ribosyl)-L-arginine
annotated property: has_exact_synonym
annotated target: N(omega)-[alpha-D-ribofuranoside 5'->5'-ester with adenosine 5'-(trihydrogen diphosphate)]-L-arginine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: omega-N-(ADP-ribosyl)-L-arginine
annotated property: has_exact_synonym
annotated target: N(omega)-alpha-D-ribofuranosyl-L-arginine 5'->5'-ester with adenosine 5'-(trihydrogen diphosphate)
has_synonym_type: Alternate name from RESID

Axiom
annotated source: omega-N-(ADP-ribosyl)-L-arginine
annotated property: has_exact_synonym
annotated target: N-(ADP-ribosyl)- (on Arginine)
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: omega-N-(ADP-ribosyl)-L-arginine
annotated property: has_exact_synonym
annotated target: omega-N-(ADP-ribosyl)-L-arginine
has_synonym_type: Name from RESID

Axiom
annotated source: omega-N-(ADP-ribosyl)-L-arginine
annotated property: has_related_synonym
annotated target: ADP Ribose addition
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: omega-N-(ADP-ribosyl)-L-arginine
annotated property: has_related_synonym
annotated target: ADP-Ribosyl
has_synonym_type: Agreed label from MS community

S-(ADP-ribosyl)-L-cysteine
type: Class
subclass of: MOD_00752
subclass of: MOD_00905
definition: A protein modification that effectively converts an L-cysteine residue to S-(ADP-ribosyl)-L-cysteine.
diff avg: 541.3
diff formula: C 15 H 21 N 5 O 13 P 2 S 0
diff mono: 541.0611
formula: C 18 H 26 N 6 O 14 P 2 S 1
mass avg: 644.44
mass mono: 644.0703
origin: C
source: natural
database_cross_reference: Unimod:213
database_cross_reference: uniprot.ptm:PTM-0055
has_exact_synonym: (R)-2-amino-3-([adenosine 5'-(trihydrogen diphosphate) 5'->5'-ester with alpha-D-ribofuranosyl]sulfanyl)propanoic acid
has_exact_synonym: ADPRibCys
has_exact_synonym: MOD_RES ADP-ribosylcysteine
has_exact_synonym: S-(ADP-ribosyl)- (on Cysteine)
has_exact_synonym: S-(ADP-ribosyl)-L-cysteine
has_exact_synonym: S-L-cysteine alpha-D-ribofuranoside 5'->5'-ester with adenosine 5'-(trihydrogen diphosphate)
has_exact_synonym: S-alpha-D-ribofuranosyl-L-cysteine 5'->5'-ester with adenosine 5'-(trihydrogen diphosphate)
has_obo_namespace: PSI-MOD
has_related_synonym: ADP Ribose addition
has_related_synonym: ADP-Ribosyl
id: MOD:00178
in_subset: PSI-MOD-slim
comment: From DeltaMass: Average Mass: 541.

Axiom
annotated source: S-(ADP-ribosyl)-L-cysteine
annotated property: definition
annotated target: A protein modification that effectively converts an L-cysteine residue to S-(ADP-ribosyl)-L-cysteine.
database_cross_reference: DeltaMass:0
database_cross_reference: PubMed:15842200
database_cross_reference: PubMed:3863818
database_cross_reference: RESID:AA0169
database_cross_reference: Unimod:213#C

Axiom
annotated source: S-(ADP-ribosyl)-L-cysteine
annotated property: has_exact_synonym
annotated target: (R)-2-amino-3-([adenosine 5'-(trihydrogen diphosphate) 5'->5'-ester with alpha-D-ribofuranosyl]sulfanyl)propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: S-(ADP-ribosyl)-L-cysteine
annotated property: has_exact_synonym
annotated target: ADPRibCys
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: S-(ADP-ribosyl)-L-cysteine
annotated property: has_exact_synonym
annotated target: MOD_RES ADP-ribosylcysteine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: S-(ADP-ribosyl)-L-cysteine
annotated property: has_exact_synonym
annotated target: S-(ADP-ribosyl)- (on Cysteine)
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: S-(ADP-ribosyl)-L-cysteine
annotated property: has_exact_synonym
annotated target: S-(ADP-ribosyl)-L-cysteine
has_synonym_type: Name from RESID

Axiom
annotated source: S-(ADP-ribosyl)-L-cysteine
annotated property: has_exact_synonym
annotated target: S-L-cysteine alpha-D-ribofuranoside 5'->5'-ester with adenosine 5'-(trihydrogen diphosphate)
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-(ADP-ribosyl)-L-cysteine
annotated property: has_exact_synonym
annotated target: S-alpha-D-ribofuranosyl-L-cysteine 5'->5'-ester with adenosine 5'-(trihydrogen diphosphate)
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-(ADP-ribosyl)-L-cysteine
annotated property: has_related_synonym
annotated target: ADP Ribose addition
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: S-(ADP-ribosyl)-L-cysteine
annotated property: has_related_synonym
annotated target: ADP-Ribosyl
has_synonym_type: Agreed label from MS community

L-glutamyl 5-glycerylphosphorylethanolamine
type: Class
subclass of: MOD_00906
definition: A protein modification that effectively converts an L-glutamic acid residue to L-glutamyl 5-glycerylphosphorylethanolamine.
diff avg: 197.13
diff formula: C 5 H 12 N 1 O 5 P 1
diff mono: 197.0453
formula: C 10 H 19 N 2 O 8 P 1
mass avg: 326.24
mass mono: 326.0879
origin: E
source: natural
database_cross_reference: Unimod:396
database_cross_reference: uniprot.ptm:PTM-0403
has_exact_synonym: (S)-2-amino-5-[2-([([2,3-dihydroxypropyl]oxy)(hydroxy)phosphoryl]oxy)ethyl]amino-5-oxopentanoic acid
has_exact_synonym: 5-L-glutamyl glycerylphosphorylethanolamine
has_exact_synonym: 5GlyceroPEtAGlu
has_exact_synonym: L-glutamyl 5-glycerophosphoethanolamine
has_exact_synonym: L-glutamyl 5-glycerophosphorylethanolamine
has_exact_synonym: L-glutamyl 5-glycerylphosphorylethanolamine
has_exact_synonym: MOD_RES 5-glutamyl glycerylphosphorylethanolamine
has_obo_namespace: PSI-MOD
has_related_synonym: GlycerylPE
has_related_synonym: glycerylphosphorylethanolamine
id: MOD:00179
in_subset: PSI-MOD-slim
comment: glycerylPE

Axiom
annotated source: L-glutamyl 5-glycerylphosphorylethanolamine
annotated property: definition
annotated target: A protein modification that effectively converts an L-glutamic acid residue to L-glutamyl 5-glycerylphosphorylethanolamine.
database_cross_reference: PubMed:2511205
database_cross_reference: PubMed:2569467
database_cross_reference: PubMed:9662537
database_cross_reference: RESID:AA0170
database_cross_reference: Unimod:396#E

Axiom
annotated source: L-glutamyl 5-glycerylphosphorylethanolamine
annotated property: has_exact_synonym
annotated target: (S)-2-amino-5-[2-([([2,3-dihydroxypropyl]oxy)(hydroxy)phosphoryl]oxy)ethyl]amino-5-oxopentanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-glutamyl 5-glycerylphosphorylethanolamine
annotated property: has_exact_synonym
annotated target: 5-L-glutamyl glycerylphosphorylethanolamine
has_synonym_type: Name from RESID

Axiom
annotated source: L-glutamyl 5-glycerylphosphorylethanolamine
annotated property: has_exact_synonym
annotated target: 5GlyceroPEtAGlu
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-glutamyl 5-glycerylphosphorylethanolamine
annotated property: has_exact_synonym
annotated target: L-glutamyl 5-glycerophosphoethanolamine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-glutamyl 5-glycerylphosphorylethanolamine
annotated property: has_exact_synonym
annotated target: L-glutamyl 5-glycerophosphorylethanolamine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-glutamyl 5-glycerylphosphorylethanolamine
annotated property: has_exact_synonym
annotated target: L-glutamyl 5-glycerylphosphorylethanolamine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-glutamyl 5-glycerylphosphorylethanolamine
annotated property: has_exact_synonym
annotated target: MOD_RES 5-glutamyl glycerylphosphorylethanolamine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-glutamyl 5-glycerylphosphorylethanolamine
annotated property: has_related_synonym
annotated target: GlycerylPE
has_synonym_type: Agreed label from MS community

Axiom
annotated source: L-glutamyl 5-glycerylphosphorylethanolamine
annotated property: has_related_synonym
annotated target: glycerylphosphorylethanolamine
has_synonym_type: Description (full_name) from Unimod

S-sulfo-L-cysteine
type: Class
subclass of: MOD_00695
subclass of: MOD_00777
subclass of: MOD_00905
definition: A protein modification that effectively converts an L-cysteine residue to S-sulfo-L-cysteine.
diff avg: 80.06
diff formula: C 0 H 0 N 0 O 3 S 1
diff mono: 79.95682
formula: C 3 H 5 N 1 O 4 S 2
mass avg: 183.2
mass mono: 182.966
origin: C
source: natural
database_cross_reference: Unimod:40
has_exact_synonym: (2R)-2-amino-3-(sulfosulfanyl)propanoic acid
has_exact_synonym: 2-amino-3-(sulfothio)propanoic acid
has_exact_synonym: 3-(sulfosulfanyl)-L-alanine
has_exact_synonym: S-sulfo-L-cysteine
has_exact_synonym: S-sulfocysteine
has_exact_synonym: SSulfCys
has_exact_synonym: cysteine sulfate thioester
has_exact_synonym: cysteine-S-sulfonic acid
has_obo_namespace: PSI-MOD
has_related_synonym: O-Sulfonation
has_related_synonym: Sulfo
id: MOD:00180

Axiom
annotated source: S-sulfo-L-cysteine
annotated property: definition
annotated target: A protein modification that effectively converts an L-cysteine residue to S-sulfo-L-cysteine.
database_cross_reference: PubMed:12876326
database_cross_reference: PubMed:14752058
database_cross_reference: PubMed:643076
database_cross_reference: RESID:AA0171
database_cross_reference: Unimod:40#C

Axiom
annotated source: S-sulfo-L-cysteine
annotated property: has_exact_synonym
annotated target: (2R)-2-amino-3-(sulfosulfanyl)propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: S-sulfo-L-cysteine
annotated property: has_exact_synonym
annotated target: 2-amino-3-(sulfothio)propanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-sulfo-L-cysteine
annotated property: has_exact_synonym
annotated target: 3-(sulfosulfanyl)-L-alanine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-sulfo-L-cysteine
annotated property: has_exact_synonym
annotated target: S-sulfo-L-cysteine
has_synonym_type: Name from RESID

Axiom
annotated source: S-sulfo-L-cysteine
annotated property: has_exact_synonym
annotated target: S-sulfocysteine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: S-sulfo-L-cysteine
annotated property: has_exact_synonym
annotated target: S-sulfocysteine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-sulfo-L-cysteine
annotated property: has_exact_synonym
annotated target: SSulfCys
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: S-sulfo-L-cysteine
annotated property: has_exact_synonym
annotated target: cysteine sulfate thioester
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-sulfo-L-cysteine
annotated property: has_exact_synonym
annotated target: cysteine-S-sulfonic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-sulfo-L-cysteine
annotated property: has_related_synonym
annotated target: O-Sulfonation
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: S-sulfo-L-cysteine
annotated property: has_related_synonym
annotated target: Sulfo
has_synonym_type: Agreed label from MS community

O4'-sulfo-L-tyrosine
type: Class
subclass of: MOD_00695
subclass of: MOD_00774
subclass of: MOD_00919
definition: A protein modification that effectively converts an L-tyrosine residue to O4'-sulfo-L-tyrosine.
diff avg: 80.06
diff formula: C 0 H 0 N 0 O 3 S 1
diff mono: 79.95682
formula: C 9 H 9 N 1 O 5 S 1
mass avg: 243.23
mass mono: 243.02014
origin: Y
source: natural
database_cross_reference: Unimod:40
database_cross_reference: uniprot.ptm:PTM-0286
has_exact_synonym: (S)-2-amino-3-(4-sulfooxyphenyl)propanoic acid
has_exact_synonym: 2-amino-3-(4-hydroxyphenyl)propanoic acid 4'-sulfate
has_exact_synonym: MOD_RES Sulfotyrosine
has_exact_synonym: O4'-sulfo-L-tyrosine
has_exact_synonym: O4-sulfotyrosine
has_exact_synonym: OSulfTyr
has_exact_synonym: Sulphation (of O of Tyrosine)
has_exact_synonym: Tyrosinyl Sulphate
has_exact_synonym: sulfationy
has_exact_synonym: tyrosine sulfate
has_exact_synonym: tyrosine-O-sulfonic acid
has_exact_synonym: tyrosine-O-sulphonic acid
has_obo_namespace: PSI-MOD
has_related_synonym: O-Sulfonation
has_related_synonym: Sulfo
id: MOD:00181
in_subset: PSI-MOD-slim
comment: From DeltaMass: Average Mass: 80 Average Mass Change:80 PubMed:9624161.

Axiom
annotated source: O4'-sulfo-L-tyrosine
annotated property: definition
annotated target: A protein modification that effectively converts an L-tyrosine residue to O4'-sulfo-L-tyrosine.
database_cross_reference: DeltaMass:88
database_cross_reference: OMSSA:114
database_cross_reference: PubMed:10226369
database_cross_reference: PubMed:14752058
database_cross_reference: PubMed:2303439
database_cross_reference: PubMed:3778455
database_cross_reference: PubMed:3801003
database_cross_reference: RESID:AA0172
database_cross_reference: Unimod:40#Y

Axiom
annotated source: O4'-sulfo-L-tyrosine
annotated property: has_exact_synonym
annotated target: (S)-2-amino-3-(4-sulfooxyphenyl)propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: O4'-sulfo-L-tyrosine
annotated property: has_exact_synonym
annotated target: 2-amino-3-(4-hydroxyphenyl)propanoic acid 4'-sulfate
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O4'-sulfo-L-tyrosine
annotated property: has_exact_synonym
annotated target: MOD_RES Sulfotyrosine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: O4'-sulfo-L-tyrosine
annotated property: has_exact_synonym
annotated target: O4'-sulfo-L-tyrosine
has_synonym_type: Name from RESID

Axiom
annotated source: O4'-sulfo-L-tyrosine
annotated property: has_exact_synonym
annotated target: O4-sulfotyrosine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O4'-sulfo-L-tyrosine
annotated property: has_exact_synonym
annotated target: OSulfTyr
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: O4'-sulfo-L-tyrosine
annotated property: has_exact_synonym
annotated target: Sulphation (of O of Tyrosine)
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: O4'-sulfo-L-tyrosine
annotated property: has_exact_synonym
annotated target: Tyrosinyl Sulphate
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: O4'-sulfo-L-tyrosine
annotated property: has_exact_synonym
annotated target: sulfationy
has_synonym_type: Short label from OMSSA

Axiom
annotated source: O4'-sulfo-L-tyrosine
annotated property: has_exact_synonym
annotated target: tyrosine sulfate
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O4'-sulfo-L-tyrosine
annotated property: has_exact_synonym
annotated target: tyrosine-O-sulfonic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O4'-sulfo-L-tyrosine
annotated property: has_exact_synonym
annotated target: tyrosine-O-sulphonic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O4'-sulfo-L-tyrosine
annotated property: has_related_synonym
annotated target: O-Sulfonation
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: O4'-sulfo-L-tyrosine
annotated property: has_related_synonym
annotated target: Sulfo
has_synonym_type: Agreed label from MS community

L-bromohistidine
type: Class
subclass of: MOD_01049
subclass of: MOD_01912
definition: A protein modification that effectively converts an L-histidine residue to L-bromohistidine.
diff avg: 78.9
diff formula: Br 1 C 0 H -1 N 0 O 0
diff mono: 77.910515
formula: Br 1 C 6 H 6 N 3 O 1
mass avg: 216.04
mass mono: 214.96942
origin: H
source: natural
database_cross_reference: Unimod:340
database_cross_reference: uniprot.ptm:PTM-0089
has_exact_synonym: Br1His
has_exact_synonym: L-bromohistidine
has_exact_synonym: MOD_RES Bromohistidine
has_obo_namespace: PSI-MOD
has_related_synonym: Bromo
has_related_synonym: bromination
id: MOD:00182

Axiom
annotated source: L-bromohistidine
annotated property: definition
annotated target: A protein modification that effectively converts an L-histidine residue to L-bromohistidine.
database_cross_reference: PubMed:2076468
database_cross_reference: PubMed:9033387
database_cross_reference: RESID:AA0173
database_cross_reference: Unimod:340#H

Axiom
annotated source: L-bromohistidine
annotated property: has_exact_synonym
annotated target: Br1His
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-bromohistidine
annotated property: has_exact_synonym
annotated target: L-bromohistidine
has_synonym_type: Name from RESID

Axiom
annotated source: L-bromohistidine
annotated property: has_exact_synonym
annotated target: MOD_RES Bromohistidine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-bromohistidine
annotated property: has_related_synonym
annotated target: Bromo
has_synonym_type: Agreed label from MS community

Axiom
annotated source: L-bromohistidine
annotated property: has_related_synonym
annotated target: bromination
has_synonym_type: Description (full_name) from Unimod

L-2'-bromophenylalanine
type: Class
subclass of: MOD_00972
definition: A protein modification that effectively converts an L-phenylalanine residue to L-2'-bromophenylalanine.
diff avg: 78.9
diff formula: Br 1 C 0 H -1 N 0 O 0
diff mono: 77.910515
formula: Br 1 C 9 H 8 N 1 O 1
mass avg: 226.07
mass mono: 224.97893
origin: F
source: natural
has_exact_synonym: (S)-2-amino-3-(2-bromophenyl)propanoic acid
has_exact_synonym: 2'BrPhe
has_exact_synonym: L-2'-bromophenylalanine
has_exact_synonym: L-o-bromination of Phe with 79Br
has_exact_synonym: o-bromophenylalanine
has_exact_synonym: ortho-bromophenylalanine
has_obo_namespace: PSI-MOD
has_related_synonym: Bromo
has_related_synonym: bromination
id: MOD:00183
comment: From DeltaMass: Average Mass: 78 Average Mass Change:78 References:Yoshino,K et.al. Biochemistry Vol. 30 pg 6203-9 (1991) Identifidation of a novel amino acid, o-bromo-L-phenylananine, in egg-associated peptides that activate spermatozoa.

Axiom
annotated source: L-2'-bromophenylalanine
annotated property: definition
annotated target: A protein modification that effectively converts an L-phenylalanine residue to L-2'-bromophenylalanine.
database_cross_reference: DeltaMass:83
database_cross_reference: PubMed:2059627
database_cross_reference: PubMed:2076468
database_cross_reference: PubMed:9033387
database_cross_reference: RESID:AA0174

Axiom
annotated source: L-2'-bromophenylalanine
annotated property: has_exact_synonym
annotated target: (S)-2-amino-3-(2-bromophenyl)propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-2'-bromophenylalanine
annotated property: has_exact_synonym
annotated target: 2'BrPhe
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-2'-bromophenylalanine
annotated property: has_exact_synonym
annotated target: L-2'-bromophenylalanine
has_synonym_type: Name from RESID

Axiom
annotated source: L-2'-bromophenylalanine
annotated property: has_exact_synonym
annotated target: L-o-bromination of Phe with 79Br
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: L-2'-bromophenylalanine
annotated property: has_exact_synonym
annotated target: o-bromophenylalanine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-2'-bromophenylalanine
annotated property: has_exact_synonym
annotated target: ortho-bromophenylalanine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-2'-bromophenylalanine
annotated property: has_related_synonym
annotated target: Bromo
has_synonym_type: Agreed label from MS community

Axiom
annotated source: L-2'-bromophenylalanine
annotated property: has_related_synonym
annotated target: bromination
has_synonym_type: Description (full_name) from Unimod

L-3'-bromophenylalanine
type: Class
subclass of: MOD_00972
definition: A protein modification that effectively converts an L-phenylalanine residue to L-3'-bromophenylalanine.
diff avg: 78.9
diff formula: Br 1 C 0 H -1 N 0 O 0
diff mono: 77.910515
formula: Br 1 C 9 H 8 N 1 O 1
mass avg: 226.07
mass mono: 224.97893
origin: F
source: natural
has_exact_synonym: (S)-2-amino-3-(3-bromophenyl)propanoic acid
has_exact_synonym: 3'BrPhe
has_exact_synonym: L-3'-bromophenylalanine
has_exact_synonym: m-bromophenylalanine
has_exact_synonym: meta-bromophenylalanine
has_obo_namespace: PSI-MOD
has_related_synonym: Bromo
has_related_synonym: bromination
id: MOD:00184

Axiom
annotated source: L-3'-bromophenylalanine
annotated property: definition
annotated target: A protein modification that effectively converts an L-phenylalanine residue to L-3'-bromophenylalanine.
database_cross_reference: PubMed:2076468
database_cross_reference: PubMed:9033387
database_cross_reference: RESID:AA0175

Axiom
annotated source: L-3'-bromophenylalanine
annotated property: has_exact_synonym
annotated target: (S)-2-amino-3-(3-bromophenyl)propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-3'-bromophenylalanine
annotated property: has_exact_synonym
annotated target: 3'BrPhe
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-3'-bromophenylalanine
annotated property: has_exact_synonym
annotated target: L-3'-bromophenylalanine
has_synonym_type: Name from RESID

Axiom
annotated source: L-3'-bromophenylalanine
annotated property: has_exact_synonym
annotated target: m-bromophenylalanine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-3'-bromophenylalanine
annotated property: has_exact_synonym
annotated target: meta-bromophenylalanine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-3'-bromophenylalanine
annotated property: has_related_synonym
annotated target: Bromo
has_synonym_type: Agreed label from MS community

Axiom
annotated source: L-3'-bromophenylalanine
annotated property: has_related_synonym
annotated target: bromination
has_synonym_type: Description (full_name) from Unimod

L-4'-bromophenylalanine
type: Class
subclass of: MOD_00972
definition: A protein modification that effectively converts an L-phenylalanine residue to L-4'-bromophenylalanine.
diff avg: 78.9
diff formula: Br 1 C 0 H -1 N 0 O 0
diff mono: 77.910515
formula: Br 1 C 9 H 8 N 1 O 1
mass avg: 226.07
mass mono: 224.97893
origin: F
source: natural
has_exact_synonym: (2S)-2-amino-3-(4-bromophenyl)propanoic acid
has_exact_synonym: 4'BrPhe
has_exact_synonym: L-4'-bromophenylalanine
has_exact_synonym: p-bromophenylalanine
has_exact_synonym: para-bromophenylalanine
has_obo_namespace: PSI-MOD
has_related_synonym: Bromo
has_related_synonym: bromination
id: MOD:00185

Axiom
annotated source: L-4'-bromophenylalanine
annotated property: definition
annotated target: A protein modification that effectively converts an L-phenylalanine residue to L-4'-bromophenylalanine.
database_cross_reference: PubMed:2076468
database_cross_reference: PubMed:9033387
database_cross_reference: RESID:AA0176

Axiom
annotated source: L-4'-bromophenylalanine
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-3-(4-bromophenyl)propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-4'-bromophenylalanine
annotated property: has_exact_synonym
annotated target: 4'BrPhe
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-4'-bromophenylalanine
annotated property: has_exact_synonym
annotated target: L-4'-bromophenylalanine
has_synonym_type: Name from RESID

Axiom
annotated source: L-4'-bromophenylalanine
annotated property: has_exact_synonym
annotated target: p-bromophenylalanine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-4'-bromophenylalanine
annotated property: has_exact_synonym
annotated target: para-bromophenylalanine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-4'-bromophenylalanine
annotated property: has_related_synonym
annotated target: Bromo
has_synonym_type: Agreed label from MS community

Axiom
annotated source: L-4'-bromophenylalanine
annotated property: has_related_synonym
annotated target: bromination
has_synonym_type: Description (full_name) from Unimod

3,3',5-triiodo-L-thyronine
type: Class
subclass of: MOD_00998
definition: A protein modification that effectively substitutes an L-tyrosine residue with 3,3',5-triiodo-L-thyronine.
diff avg: 469.79
diff formula: C 6 H 1 I 3 N 0 O 1
diff mono: 469.71616
formula: C 15 H 10 I 3 N 1 O 3
mass avg: 632.96
mass mono: 632.7795
origin: Y
source: natural
database_cross_reference: Unimod:397
database_cross_reference: uniprot.ptm:PTM-0295
has_exact_synonym: (S)-2-amino-3-[4-(4-hydroxy-3-iodophenoxy)-3,5-diiodophenyl]propanoic acid
has_exact_synonym: 3',3'',5'-triiodo-L-thyronine
has_exact_synonym: 3,3',5-triiodo-L-thyronine
has_exact_synonym: 3,5,3'-Triiodothyronine (from Tyrosine)
has_exact_synonym: 3,5,3'-triiodo-L-thyronine
has_exact_synonym: 4-(4-hydroxy-3-iodophenoxy)-3,5-diiodo-L-phenylalanine
has_exact_synonym: I3Thy
has_exact_synonym: MOD_RES Triiodothyronine
has_exact_synonym: O-(4-hydroxy-3-iodophenyl)-3,5-diiodo-L-tyrosine
has_exact_synonym: T3
has_exact_synonym: liothyronine
has_obo_namespace: PSI-MOD
has_related_synonym: Triiodothyronine
has_related_synonym: triiodo
id: MOD:00186
in_subset: PSI-MOD-slim
comment: From DeltaMass: Average Mass: 470.

Axiom
annotated source: 3,3',5-triiodo-L-thyronine
annotated property: definition
annotated target: A protein modification that effectively substitutes an L-tyrosine residue with 3,3',5-triiodo-L-thyronine.
database_cross_reference: ChEBI:18258
database_cross_reference: DeltaMass:0
database_cross_reference: RESID:AA0177
database_cross_reference: Unimod:397

Axiom
annotated source: 3,3',5-triiodo-L-thyronine
annotated property: has_exact_synonym
annotated target: (S)-2-amino-3-[4-(4-hydroxy-3-iodophenoxy)-3,5-diiodophenyl]propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: 3,3',5-triiodo-L-thyronine
annotated property: has_exact_synonym
annotated target: 3',3'',5'-triiodo-L-thyronine
has_synonym_type: Name from RESID

Axiom
annotated source: 3,3',5-triiodo-L-thyronine
annotated property: has_exact_synonym
annotated target: 3,3',5-triiodo-L-thyronine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 3,3',5-triiodo-L-thyronine
annotated property: has_exact_synonym
annotated target: 3,5,3'-Triiodothyronine (from Tyrosine)
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: 3,3',5-triiodo-L-thyronine
annotated property: has_exact_synonym
annotated target: 3,5,3'-triiodo-L-thyronine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 3,3',5-triiodo-L-thyronine
annotated property: has_exact_synonym
annotated target: 4-(4-hydroxy-3-iodophenoxy)-3,5-diiodo-L-phenylalanine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 3,3',5-triiodo-L-thyronine
annotated property: has_exact_synonym
annotated target: I3Thy
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: 3,3',5-triiodo-L-thyronine
annotated property: has_exact_synonym
annotated target: MOD_RES Triiodothyronine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: 3,3',5-triiodo-L-thyronine
annotated property: has_exact_synonym
annotated target: O-(4-hydroxy-3-iodophenyl)-3,5-diiodo-L-tyrosine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 3,3',5-triiodo-L-thyronine
annotated property: has_exact_synonym
annotated target: T3
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 3,3',5-triiodo-L-thyronine
annotated property: has_exact_synonym
annotated target: liothyronine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 3,3',5-triiodo-L-thyronine
annotated property: has_related_synonym
annotated target: Triiodothyronine
has_synonym_type: Agreed label from MS community

Axiom
annotated source: 3,3',5-triiodo-L-thyronine
annotated property: has_related_synonym
annotated target: triiodo
has_synonym_type: Description (full_name) from Unimod

L-thyroxine
type: Class
subclass of: MOD_00998
definition: A protein modification that effectively substitutes an L-tyrosine residue with L-thyroxine.
diff avg: 595.68
diff formula: C 6 H 0 I 4 N 0 O 1
diff mono: 595.6128
formula: C 15 H 9 I 4 N 1 O 3
mass avg: 758.86
mass mono: 758.67615
origin: Y
source: natural
database_cross_reference: Unimod:398
database_cross_reference: uniprot.ptm:PTM-0294
has_exact_synonym: (S)-2-amino-3-[4-(4-hydroxy-3,5-diiodophenoxy)-3,5-diiodophenyl]propanoic acid
has_exact_synonym: 3',3'',5',5''-tetraiodo-L-thyronine
has_exact_synonym: 3,3',5,5'-tetraiodo-L-thyronine
has_exact_synonym: 3,5,3',5'-tetraiodo-L-thyronine
has_exact_synonym: 4-(4-hydroxy-3,5-diiodophenoxy)-3,5-diiodo-L-phenylalanine
has_exact_synonym: I4Thy
has_exact_synonym: L-thyroxine
has_exact_synonym: MOD_RES Thyroxine
has_exact_synonym: O-(4-hydroxy-3,5-diiodophenyl)-3,5-diiodo-L-tyrosine
has_exact_synonym: T4
has_obo_namespace: PSI-MOD
has_related_synonym: Thyroxine
has_related_synonym: tetraiodo
id: MOD:00187
in_subset: PSI-MOD-slim

Axiom
annotated source: L-thyroxine
annotated property: definition
annotated target: A protein modification that effectively substitutes an L-tyrosine residue with L-thyroxine.
database_cross_reference: ChEBI:18332
database_cross_reference: PubMed:6704086
database_cross_reference: RESID:AA0178
database_cross_reference: Unimod:398

Axiom
annotated source: L-thyroxine
annotated property: has_exact_synonym
annotated target: (S)-2-amino-3-[4-(4-hydroxy-3,5-diiodophenoxy)-3,5-diiodophenyl]propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-thyroxine
annotated property: has_exact_synonym
annotated target: 3',3'',5',5''-tetraiodo-L-thyronine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-thyroxine
annotated property: has_exact_synonym
annotated target: 3,3',5,5'-tetraiodo-L-thyronine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-thyroxine
annotated property: has_exact_synonym
annotated target: 3,5,3',5'-tetraiodo-L-thyronine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-thyroxine
annotated property: has_exact_synonym
annotated target: 4-(4-hydroxy-3,5-diiodophenoxy)-3,5-diiodo-L-phenylalanine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-thyroxine
annotated property: has_exact_synonym
annotated target: I4Thy
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-thyroxine
annotated property: has_exact_synonym
annotated target: L-thyroxine
has_synonym_type: Name from RESID

Axiom
annotated source: L-thyroxine
annotated property: has_exact_synonym
annotated target: MOD_RES Thyroxine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-thyroxine
annotated property: has_exact_synonym
annotated target: O-(4-hydroxy-3,5-diiodophenyl)-3,5-diiodo-L-tyrosine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-thyroxine
annotated property: has_exact_synonym
annotated target: T4
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-thyroxine
annotated property: has_related_synonym
annotated target: Thyroxine
has_synonym_type: Agreed label from MS community

Axiom
annotated source: L-thyroxine
annotated property: has_related_synonym
annotated target: tetraiodo
has_synonym_type: Description (full_name) from Unimod

6'-bromo-L-tryptophan
type: Class
subclass of: MOD_01068
subclass of: MOD_01912
definition: A protein modification that effectively converts an L-tryptophan residue to 6'-bromo-L-tryptophan.
diff avg: 78.9
diff formula: Br 1 C 0 H -1 N 0 O 0
diff mono: 77.910515
formula: Br 1 C 11 H 9 N 2 O 1
mass avg: 265.11
mass mono: 263.98984
origin: W
source: natural
database_cross_reference: Unimod:398
database_cross_reference: uniprot.ptm:PTM-0051
has_exact_synonym: (2S)-2-amino-3-(6-bromo-1H-indol-3-yl)propanoic acid
has_exact_synonym: 6'-BrTrp
has_exact_synonym: 6'-bromo-L-tryptophan
has_exact_synonym: MOD_RES 6'-bromotryptophan
has_obo_namespace: PSI-MOD
has_related_synonym: Bromo
has_related_synonym: bromination
id: MOD:00188

Axiom
annotated source: 6'-bromo-L-tryptophan
annotated property: definition
annotated target: A protein modification that effectively converts an L-tryptophan residue to 6'-bromo-L-tryptophan.
database_cross_reference: PubMed:12118011
database_cross_reference: PubMed:9030520
database_cross_reference: PubMed:9033387
database_cross_reference: PubMed:9434739
database_cross_reference: RESID:AA0179
database_cross_reference: Unimod:340#W

Axiom
annotated source: 6'-bromo-L-tryptophan
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-3-(6-bromo-1H-indol-3-yl)propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: 6'-bromo-L-tryptophan
annotated property: has_exact_synonym
annotated target: 6'-BrTrp
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: 6'-bromo-L-tryptophan
annotated property: has_exact_synonym
annotated target: 6'-bromo-L-tryptophan
has_synonym_type: Name from RESID

Axiom
annotated source: 6'-bromo-L-tryptophan
annotated property: has_exact_synonym
annotated target: MOD_RES 6'-bromotryptophan
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: 6'-bromo-L-tryptophan
annotated property: has_related_synonym
annotated target: Bromo
has_synonym_type: Agreed label from MS community

Axiom
annotated source: 6'-bromo-L-tryptophan
annotated property: has_related_synonym
annotated target: bromination
has_synonym_type: Description (full_name) from Unimod

dehydroalanine (Ser)
type: Class
subclass of: phosphorylation of an hydroxyl amino acid with prompt loss of phosphate
subclass of: MOD_00916
subclass of: MOD_01168
definition: A protein modification that effectively converts an L-serine residue to dehydroalanine.
diff avg: -18.02
diff formula: C 0 H -2 N 0 O -1
diff mono: -18.010565
formula: C 3 H 3 N 1 O 1
mass avg: 69.06
mass mono: 69.02146
origin: S
source: natural
database_cross_reference: Unimod:23
database_cross_reference: uniprot.ptm:PTM-0006
has_exact_synonym: 2,3-didehydroalanine
has_exact_synonym: 2-aminoacrylic acid
has_exact_synonym: 2-aminopropenoic acid
has_exact_synonym: 4-methylidene-imidazole-5-one (MIO) active site
has_exact_synonym: Dha
has_exact_synonym: Dha(Ser)
has_exact_synonym: MOD_RES 2,3-didehydroalanine (Ser)
has_exact_synonym: anhydroserine
has_exact_synonym: beta-elim-s
has_exact_synonym: dehydro
has_exact_synonym: dehydroalanine
has_exact_synonym: phospholosss
has_obo_namespace: PSI-MOD
has_related_synonym: Dehydrated
id: MOD:00189
in_subset: PSI-MOD-slim

Axiom
annotated source: dehydroalanine (Ser)
annotated property: definition
annotated target: A protein modification that effectively converts an L-serine residue to dehydroalanine.
database_cross_reference: DeltaMass:0
database_cross_reference: OMSSA:140
database_cross_reference: OMSSA:164
database_cross_reference: OMSSA:96
database_cross_reference: PubMed:10220322
database_cross_reference: PubMed:1547888
database_cross_reference: PubMed:1815586
database_cross_reference: PubMed:2914619
database_cross_reference: PubMed:7947813
database_cross_reference: PubMed:8239649
database_cross_reference: RESID:AA0181#SER
database_cross_reference: Unimod:23#S

Axiom
annotated source: dehydroalanine (Ser)
annotated property: has_exact_synonym
annotated target: 2,3-didehydroalanine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: dehydroalanine (Ser)
annotated property: has_exact_synonym
annotated target: 2-aminoacrylic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: dehydroalanine (Ser)
annotated property: has_exact_synonym
annotated target: 2-aminopropenoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: dehydroalanine (Ser)
annotated property: has_exact_synonym
annotated target: 4-methylidene-imidazole-5-one (MIO) active site
has_synonym_type: Alternate name from RESID

Axiom
annotated source: dehydroalanine (Ser)
annotated property: has_exact_synonym
annotated target: Dha
has_synonym_type: Alternate name from RESID

Axiom
annotated source: dehydroalanine (Ser)
annotated property: has_exact_synonym
annotated target: Dha(Ser)
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: dehydroalanine (Ser)
annotated property: has_exact_synonym
annotated target: MOD_RES 2,3-didehydroalanine (Ser)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: dehydroalanine (Ser)
annotated property: has_exact_synonym
annotated target: anhydroserine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: dehydroalanine (Ser)
annotated property: has_exact_synonym
annotated target: beta-elim-s
has_synonym_type: Short label from OMSSA

Axiom
annotated source: dehydroalanine (Ser)
annotated property: has_exact_synonym
annotated target: dehydro
has_synonym_type: Short label from OMSSA

Axiom
annotated source: dehydroalanine (Ser)
annotated property: has_exact_synonym
annotated target: dehydroalanine
has_synonym_type: Name from RESID

Axiom
annotated source: dehydroalanine (Ser)
annotated property: has_exact_synonym
annotated target: phospholosss
has_synonym_type: Short label from OMSSA

Axiom
annotated source: dehydroalanine (Ser)
annotated property: has_related_synonym
annotated target: Dehydrated
has_synonym_type: Agreed label from MS community

dehydrobutyrine (Thr)
type: Class
subclass of: phosphorylation of an hydroxyl amino acid with prompt loss of phosphate
subclass of: MOD_00917
subclass of: MOD_01703
definition: A protein modification that effectively converts an L-threonine residue to dehydrobutyrine.
diff avg: -18.02
diff formula: C 0 H -2 N 0 O -1
diff mono: -18.010565
formula: C 4 H 5 N 1 O 1
mass avg: 83.09
mass mono: 83.03712
origin: T
source: natural
database_cross_reference: Unimod:23
database_cross_reference: uniprot.ptm:PTM-0007
has_exact_synonym: (2Z)-2-aminobut-2-enoic acid
has_exact_synonym: (Z)-2-amino-2-butenoic acid
has_exact_synonym: (Z)-2-aminobutenoic acid
has_exact_synonym: (Z)-dehydrobutyrine
has_exact_synonym: 2,3-didehydrobutyrine
has_exact_synonym: 3-methyldehydroalanine
has_exact_synonym: Dehydroamino butyric acid
has_exact_synonym: Dhb
has_exact_synonym: Dhb(Thr)
has_exact_synonym: MOD_RES 2,3-didehydrobutyrine
has_exact_synonym: alpha,beta-dehydroaminobutyric acid
has_exact_synonym: anhydrothreonine
has_exact_synonym: beta-elim-t
has_exact_synonym: dehydro
has_exact_synonym: methyl-dehydroalanine
has_exact_synonym: phospholosst
has_obo_namespace: PSI-MOD
has_related_synonym: Dehydrated
has_related_synonym: Dehydration
id: MOD:00190
in_subset: PSI-MOD-slim

Axiom
annotated source: dehydrobutyrine (Thr)
annotated property: definition
annotated target: A protein modification that effectively converts an L-threonine residue to dehydrobutyrine.
database_cross_reference: DeltaMass:0
database_cross_reference: OMSSA:141
database_cross_reference: OMSSA:164
database_cross_reference: OMSSA:97
database_cross_reference: PubMed:1547888
database_cross_reference: PubMed:3769923
database_cross_reference: RESID:AA0182
database_cross_reference: Unimod:23#T

Axiom
annotated source: dehydrobutyrine (Thr)
annotated property: has_exact_synonym
annotated target: (2Z)-2-aminobut-2-enoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: dehydrobutyrine (Thr)
annotated property: has_exact_synonym
annotated target: (Z)-2-amino-2-butenoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: dehydrobutyrine (Thr)
annotated property: has_exact_synonym
annotated target: (Z)-2-aminobutenoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: dehydrobutyrine (Thr)
annotated property: has_exact_synonym
annotated target: (Z)-dehydrobutyrine
has_synonym_type: Name from RESID

Axiom
annotated source: dehydrobutyrine (Thr)
annotated property: has_exact_synonym
annotated target: 2,3-didehydrobutyrine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: dehydrobutyrine (Thr)
annotated property: has_exact_synonym
annotated target: 3-methyldehydroalanine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: dehydrobutyrine (Thr)
annotated property: has_exact_synonym
annotated target: Dehydroamino butyric acid
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: dehydrobutyrine (Thr)
annotated property: has_exact_synonym
annotated target: Dhb
has_synonym_type: Alternate name from RESID

Axiom
annotated source: dehydrobutyrine (Thr)
annotated property: has_exact_synonym
annotated target: Dhb(Thr)
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: dehydrobutyrine (Thr)
annotated property: has_exact_synonym
annotated target: MOD_RES 2,3-didehydrobutyrine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: dehydrobutyrine (Thr)
annotated property: has_exact_synonym
annotated target: alpha,beta-dehydroaminobutyric acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: dehydrobutyrine (Thr)
annotated property: has_exact_synonym
annotated target: anhydrothreonine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: dehydrobutyrine (Thr)
annotated property: has_exact_synonym
annotated target: beta-elim-t
has_synonym_type: Short label from OMSSA

Axiom
annotated source: dehydrobutyrine (Thr)
annotated property: has_exact_synonym
annotated target: dehydro
has_synonym_type: Short label from OMSSA

Axiom
annotated source: dehydrobutyrine (Thr)
annotated property: has_exact_synonym
annotated target: methyl-dehydroalanine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: dehydrobutyrine (Thr)
annotated property: has_exact_synonym
annotated target: phospholosst
has_synonym_type: Short label from OMSSA

Axiom
annotated source: dehydrobutyrine (Thr)
annotated property: has_related_synonym
annotated target: Dehydrated
has_synonym_type: Agreed label from MS community

Axiom
annotated source: dehydrobutyrine (Thr)
annotated property: has_related_synonym
annotated target: Dehydrated
has_synonym_type: Interim label from Unimod

Axiom
annotated source: dehydrobutyrine (Thr)
annotated property: has_related_synonym
annotated target: Dehydration
has_synonym_type: Description (full_name) from Unimod

(Z)-2,3-didehydrotyrosine
type: Class
subclass of: MOD_00706
definition: A protein modification that effectively converts L-tyrosine to (Z)-2,3-didehydrotyrosine.
diff avg: -2.02
diff formula: C 0 H -2 N 0 O 0
diff mono: -2.01565
formula: C 9 H 7 N 1 O 2
mass avg: 161.16
mass mono: 161.04768
origin: Y
source: natural
database_cross_reference: uniprot.ptm:PTM-0002
has_exact_synonym: (2Z)-2-amino-3-(4-hydroxyphenyl)prop-2-enoic acid
has_exact_synonym: (Z)-2,3-didehydrogenated tyrosine
has_exact_synonym: (Z)-2,3-didehydrotyrosine
has_exact_synonym: MOD_RES (Z)-2,3-didehydrotyrosine
has_exact_synonym: Z-dHTyr
has_exact_synonym: amino-(para-hydroxybenzylidenyl)acetic acid
has_exact_synonym: cis-dehydrotyrosine
has_exact_synonym: green fluorescent protein chromophore
has_exact_synonym: para-hydroxybenzylidene-imidazolidinone chromophore
has_exact_synonym: red fluorescent protein chromophore
has_obo_namespace: PSI-MOD
has_related_synonym: 2-amino-3-oxo-butanoic_acid
has_related_synonym: Didehydro
id: MOD:00191
in_subset: PSI-MOD-slim
comment: incidental to RESID:AA0184; incidental to RESID:AA0187; incidental to RESID:AA0188; incidental to RESID:AA0189; incidental to RESID:AA0378; incidental to RESID:AA0379; incidental to RESID:AA0380; incidental to RESID:AA0381

Axiom
annotated source: (Z)-2,3-didehydrotyrosine
annotated property: definition
annotated target: A protein modification that effectively converts L-tyrosine to (Z)-2,3-didehydrotyrosine.
database_cross_reference: PubMed:1347277
database_cross_reference: PubMed:9631087
database_cross_reference: RESID:AA0183

Axiom
annotated source: (Z)-2,3-didehydrotyrosine
annotated property: has_exact_synonym
annotated target: (2Z)-2-amino-3-(4-hydroxyphenyl)prop-2-enoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: (Z)-2,3-didehydrotyrosine
annotated property: has_exact_synonym
annotated target: (Z)-2,3-didehydrogenated tyrosine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: (Z)-2,3-didehydrotyrosine
annotated property: has_exact_synonym
annotated target: (Z)-2,3-didehydrotyrosine
has_synonym_type: Name from RESID

Axiom
annotated source: (Z)-2,3-didehydrotyrosine
annotated property: has_exact_synonym
annotated target: MOD_RES (Z)-2,3-didehydrotyrosine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: (Z)-2,3-didehydrotyrosine
annotated property: has_exact_synonym
annotated target: Z-dHTyr
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: (Z)-2,3-didehydrotyrosine
annotated property: has_exact_synonym
annotated target: amino-(para-hydroxybenzylidenyl)acetic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: (Z)-2,3-didehydrotyrosine
annotated property: has_exact_synonym
annotated target: cis-dehydrotyrosine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: (Z)-2,3-didehydrotyrosine
annotated property: has_exact_synonym
annotated target: green fluorescent protein chromophore
has_synonym_type: Alternate name from RESID

Axiom
annotated source: (Z)-2,3-didehydrotyrosine
annotated property: has_exact_synonym
annotated target: para-hydroxybenzylidene-imidazolidinone chromophore
has_synonym_type: Alternate name from RESID

Axiom
annotated source: (Z)-2,3-didehydrotyrosine
annotated property: has_exact_synonym
annotated target: red fluorescent protein chromophore
has_synonym_type: Alternate name from RESID

Axiom
annotated source: (Z)-2,3-didehydrotyrosine
annotated property: has_related_synonym
annotated target: 2-amino-3-oxo-butanoic_acid
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: (Z)-2,3-didehydrotyrosine
annotated property: has_related_synonym
annotated target: Didehydro
has_synonym_type: Agreed label from MS community

L-serine 5-imidazolinone glycine
type: Class
subclass of: MOD_00954
subclass of: MOD_01882
subclass of: MOD_02047
subclass of: MOD_02055
definition: A protein modification that effectively crosslinks an L-serine residue and a glycine residue to form L-serine 5-imidazolinone glycine.
diff avg: -18.02
diff formula: C 0 H -2 N 0 O -1
diff mono: -18.010565
formula: C 5 H 6 N 2 O 2
mass avg: 126.11
mass mono: 126.04293
origin: G, S
source: natural
database_cross_reference: uniprot.ptm:PTM-0049
has_exact_synonym: (2-[(1R)-1-amino-2-hydroxyethyl]-5-oxo-4,5-dihydro-1H-imidazol-1-yl)acetic acid
has_exact_synonym: 2-[1-amino-2-hydroxyethyl]-1-carboxymethyl-1-imidazolin-5-one
has_exact_synonym: 4-methylidene-imidazole-5-one (MIO) active site
has_exact_synonym: CROSSLNK 5-imidazolinone (Ser-Gly)
has_exact_synonym: L-serine 5-imidazolinone glycine
has_exact_synonym: green fluorescent protein chromophore
has_exact_synonym: para-hydroxybenzylidene-imidazolidinone chromophore
has_exact_synonym: seryl-5-imidazolinone glycine
has_obo_namespace: PSI-MOD
id: MOD:00192
comment: Cross-link 2; carboxamidine; incidental to RESID:AA0183; incidental to RESID:AA0365.

Axiom
annotated source: L-serine 5-imidazolinone glycine
annotated property: definition
annotated target: A protein modification that effectively crosslinks an L-serine residue and a glycine residue to form L-serine 5-imidazolinone glycine.
database_cross_reference: ChEBI:21393
database_cross_reference: PubMed:1347277
database_cross_reference: PubMed:9631087
database_cross_reference: RESID:AA0184

Axiom
annotated source: L-serine 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: (2-[(1R)-1-amino-2-hydroxyethyl]-5-oxo-4,5-dihydro-1H-imidazol-1-yl)acetic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-serine 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: 2-[1-amino-2-hydroxyethyl]-1-carboxymethyl-1-imidazolin-5-one
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-serine 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: 4-methylidene-imidazole-5-one (MIO) active site
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-serine 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: CROSSLNK 5-imidazolinone (Ser-Gly)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-serine 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: L-serine 5-imidazolinone glycine
has_synonym_type: Name from RESID

Axiom
annotated source: L-serine 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: green fluorescent protein chromophore
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-serine 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: para-hydroxybenzylidene-imidazolidinone chromophore
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-serine 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: seryl-5-imidazolinone glycine
has_synonym_type: Alternate name from RESID

L-3-oxoalanine (Cys)
type: Class
subclass of: MOD_01169
definition: A protein modification that effectively converts an L-cysteine residue to L-oxoalanine.
diff avg: -18.08
diff formula: C 0 H -2 N 0 O 1 S -1
diff mono: -17.992805
formula: C 3 H 3 N 1 O 2
mass avg: 85.06
mass mono: 85.01638
origin: C
source: natural
database_cross_reference: Unimod:402
database_cross_reference: uniprot.ptm:PTM-0034
has_exact_synonym: (S)-2-amino-3-oxopropanoic acid
has_exact_synonym: 2-amino-3-oxopropionic acid
has_exact_synonym: L-3-oxoalanine
has_exact_synonym: L-amino-malonic acid semialdehyde
has_exact_synonym: L-aminomalonaldehydic acid
has_exact_synonym: MOD_RES 3-oxoalanine (Cys)
has_exact_synonym: Oxala(Cys)
has_obo_namespace: PSI-MOD
has_related_synonym: C(alpha)-formylglycine
has_related_synonym: L-serinesemialdehyde
id: MOD:00193
in_subset: PSI-MOD-slim

Axiom
annotated source: L-3-oxoalanine (Cys)
annotated property: definition
annotated target: A protein modification that effectively converts an L-cysteine residue to L-oxoalanine.
database_cross_reference: DeltaMass:350
database_cross_reference: PubMed:14563551
database_cross_reference: PubMed:7628016
database_cross_reference: PubMed:8681943
database_cross_reference: PubMed:9478923
database_cross_reference: RESID:AA0185#CYS
database_cross_reference: Unimod:402#C

Axiom
annotated source: L-3-oxoalanine (Cys)
annotated property: has_exact_synonym
annotated target: (S)-2-amino-3-oxopropanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-3-oxoalanine (Cys)
annotated property: has_exact_synonym
annotated target: 2-amino-3-oxopropionic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-3-oxoalanine (Cys)
annotated property: has_exact_synonym
annotated target: L-3-oxoalanine
has_synonym_type: Name from RESID

Axiom
annotated source: L-3-oxoalanine (Cys)
annotated property: has_exact_synonym
annotated target: L-amino-malonic acid semialdehyde
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-3-oxoalanine (Cys)
annotated property: has_exact_synonym
annotated target: L-aminomalonaldehydic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-3-oxoalanine (Cys)
annotated property: has_exact_synonym
annotated target: MOD_RES 3-oxoalanine (Cys)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-3-oxoalanine (Cys)
annotated property: has_exact_synonym
annotated target: Oxala(Cys)
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-3-oxoalanine (Cys)
annotated property: has_related_synonym
annotated target: C(alpha)-formylglycine
has_synonym_type: Misnomer tagged alternate name from RESID

Axiom
annotated source: L-3-oxoalanine (Cys)
annotated property: has_related_synonym
annotated target: L-serinesemialdehyde
has_synonym_type: Misnomer tagged alternate name from RESID

lactic acid
type: Class
subclass of: MOD_00916
definition: A protein modification that effectively converts an L-serine residue to an amino-terminal lactic acid.
diff avg: -15.02
diff formula: C 0 H -1 N -1 O 0
diff mono: -15.010899
formula: C 3 H 5 O 2
mass avg: 73.07
mass mono: 73.02895
origin: S
term spec: N-term
database_cross_reference: Unimod:403
database_cross_reference: uniprot.ptm:PTM-0163
has_exact_synonym: (2R)-2-hydroxypropanoic acid
has_exact_synonym: 2-hydroxypropionic acid
has_exact_synonym: Lac(Ser)
has_exact_synonym: MOD_RES Lactic acid
has_exact_synonym: alpha-hydroxypropionic acid
has_exact_synonym: lactic acid
has_obo_namespace: PSI-MOD
has_related_synonym: Ser->LacticAcid
has_related_synonym: lactic acid from N-term Ser
id: MOD:00194

Axiom
annotated source: lactic acid
annotated property: definition
annotated target: A protein modification that effectively converts an L-serine residue to an amino-terminal lactic acid.
database_cross_reference: PubMed:7607233
database_cross_reference: RESID:AA0186
database_cross_reference: Unimod:403#S

Axiom
annotated source: lactic acid
annotated property: has_exact_synonym
annotated target: (2R)-2-hydroxypropanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: lactic acid
annotated property: has_exact_synonym
annotated target: 2-hydroxypropionic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: lactic acid
annotated property: has_exact_synonym
annotated target: Lac(Ser)
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: lactic acid
annotated property: has_exact_synonym
annotated target: MOD_RES Lactic acid
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: lactic acid
annotated property: has_exact_synonym
annotated target: alpha-hydroxypropionic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: lactic acid
annotated property: has_exact_synonym
annotated target: lactic acid
has_synonym_type: Name from RESID

Axiom
annotated source: lactic acid
annotated property: has_related_synonym
annotated target: Ser->LacticAcid
has_synonym_type: Agreed label from MS community

Axiom
annotated source: lactic acid
annotated property: has_related_synonym
annotated target: lactic acid from N-term Ser
has_synonym_type: Description (full_name) from Unimod

L-alanine 5-imidazolinone glycine
type: Class
subclass of: MOD_00954
subclass of: MOD_01882
subclass of: MOD_02040
subclass of: MOD_02047
definition: A protein modification that effectively crosslinks an L-alanine residue and a glycine residue to form L-alanine 5-imidazolinone glycine.
diff avg: -18.02
diff formula: C 0 H -2 N 0 O -1
diff mono: -18.010565
formula: C 5 H 6 N 2 O 1
mass avg: 110.12
mass mono: 110.04801
origin: A, G
source: natural
database_cross_reference: uniprot.ptm:PTM-0045
has_exact_synonym: (2-[(1S)-1-aminoethyl]-5-oxo-4,5-dihydro-1H-imidazol-1-yl)acetic acid
has_exact_synonym: 2-[1-aminoethyl]-1-carboxymethyl-1-imidazolin-5-one
has_exact_synonym: 4-methylidene-imidazole-5-one active site
has_exact_synonym: CROSSLNK 5-imidazolinone (Ala-Gly)
has_exact_synonym: L-alanine 5-imidazolinone glycine
has_exact_synonym: XLNK-1Ala-NGly(Imidazole)
has_exact_synonym: alanyl-5-imidazolinone glycine
has_exact_synonym: para-hydroxybenzylidene-imidazolidinone chromophore
has_obo_namespace: PSI-MOD
id: MOD:00195
comment: Cross-link 2; carboxamidine; incidental to RESID:AA0181; incidental to RESID:AA0183; incidental to RESID:AA0365.

Axiom
annotated source: L-alanine 5-imidazolinone glycine
annotated property: definition
annotated target: A protein modification that effectively crosslinks an L-alanine residue and a glycine residue to form L-alanine 5-imidazolinone glycine.
database_cross_reference: PubMed:10220322
database_cross_reference: RESID:AA0187

Axiom
annotated source: L-alanine 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: (2-[(1S)-1-aminoethyl]-5-oxo-4,5-dihydro-1H-imidazol-1-yl)acetic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-alanine 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: 2-[1-aminoethyl]-1-carboxymethyl-1-imidazolin-5-one
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-alanine 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: 4-methylidene-imidazole-5-one active site
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-alanine 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: CROSSLNK 5-imidazolinone (Ala-Gly)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-alanine 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: L-alanine 5-imidazolinone glycine
has_synonym_type: Name from RESID

Axiom
annotated source: L-alanine 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: XLNK-1Ala-NGly(Imidazole)
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-alanine 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: alanyl-5-imidazolinone glycine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-alanine 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: para-hydroxybenzylidene-imidazolidinone chromophore
has_synonym_type: Alternate name from RESID

L-cysteine 5-imidazolinone glycine
type: Class
subclass of: MOD_00954
subclass of: MOD_01882
subclass of: MOD_02044
subclass of: MOD_02047
definition: A protein modification that effectively crosslinks an L-cysteine residue and a glycine residue to form L-cysteine 5-imidazolinone glycine.
diff avg: -18.02
diff formula: C 0 H -2 N 0 O -1 S 0
diff mono: -18.010565
formula: C 5 H 6 N 2 O 1 S 1
mass avg: 142.18
mass mono: 142.02008
origin: C, G
source: natural
database_cross_reference: uniprot.ptm:PTM-0047
has_exact_synonym: (2-[(1R)-1-amino-2-sulfanylethyl]-5-oxo-4,5-dihydro-1H-imidazol-1-yl)acetic acid
has_exact_synonym: 2-[1-amino-2-sulfanylethyl]-1-carboxymethyl-1-imidazolin-5-one
has_exact_synonym: 4-methylidene-imidazole-5-one (MIO) active site
has_exact_synonym: CROSSLNK 5-imidazolinone (Cys-Gly)
has_exact_synonym: L-cysteine 5-imidazolinone glycine
has_exact_synonym: XLNK-1Cys-NGly(Imidazole)
has_exact_synonym: cysteinyl-5-imidazolinone glycine
has_exact_synonym: para-hydroxybenzylidene-imidazolidinone chromophore
has_obo_namespace: PSI-MOD
id: MOD:00196
comment: Cross-link 2; carboxamidine; incidental to RESID:AA0181; incidental to RESID:AA0183; incidental to RESID:AA0365.

Axiom
annotated source: L-cysteine 5-imidazolinone glycine
annotated property: definition
annotated target: A protein modification that effectively crosslinks an L-cysteine residue and a glycine residue to form L-cysteine 5-imidazolinone glycine.
database_cross_reference: PubMed:1537807
database_cross_reference: RESID:AA0188

Axiom
annotated source: L-cysteine 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: (2-[(1R)-1-amino-2-sulfanylethyl]-5-oxo-4,5-dihydro-1H-imidazol-1-yl)acetic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-cysteine 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: 2-[1-amino-2-sulfanylethyl]-1-carboxymethyl-1-imidazolin-5-one
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteine 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: 4-methylidene-imidazole-5-one (MIO) active site
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteine 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: CROSSLNK 5-imidazolinone (Cys-Gly)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-cysteine 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: L-cysteine 5-imidazolinone glycine
has_synonym_type: Name from RESID

Axiom
annotated source: L-cysteine 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: XLNK-1Cys-NGly(Imidazole)
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-cysteine 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: cysteinyl-5-imidazolinone glycine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteine 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: para-hydroxybenzylidene-imidazolidinone chromophore
has_synonym_type: Alternate name from RESID

2-imino-glutamine 5-imidazolinone glycine
type: Class
subclass of: MOD_01882
subclass of: MOD_02046
subclass of: MOD_02047
definition: A protein modification that effectively crosslinks an L-glutamine residue and a glycine residue to form 2-imino-glutamine 5-imidazolinone glycine.
diff avg: -20.03
diff formula: C 0 H -4 N 0 O -1
diff mono: -20.026215
formula: C 7 H 7 N 3 O 2
mass avg: 165.15
mass mono: 165.05383
origin: G, Q
source: natural
database_cross_reference: uniprot.ptm:PTM-0013
has_exact_synonym: 2,N-didehydroglutaminyl-5-imidazolinone glycine
has_exact_synonym: 2-(3-carbamoyl-1-imino-propyl)-1-carboxymethyl-1-imidazolin-5-one
has_exact_synonym: 2-imino-glutamine 5-imidazolinone glycine
has_exact_synonym: CROSSLNK 2-iminomethyl-5-imidazolinone (Gln-Gly)
has_exact_synonym: [2-(3-carbamoyl-1-imino-propyl)-5-oxo-4,5-dihydro-imidazol-1-yl]-acetic acid
has_exact_synonym: [2-(4-amino-4-oxobutanimidoyl)-5-oxo-4,5-dihydro-1H-imidazol-1-yl]acetic acid
has_exact_synonym: fluorescent protein FP583 chromophore
has_exact_synonym: para-hydroxybenzylidene-imidazolidinone chromophore
has_exact_synonym: red fluorescent protein chromophore
has_obo_namespace: PSI-MOD
id: MOD:00197
comment: Cross-link 2; carboxamidine; incidental to RESID:AA0183; incidental to RESID:AA0365.

Axiom
annotated source: 2-imino-glutamine 5-imidazolinone glycine
annotated property: definition
annotated target: A protein modification that effectively crosslinks an L-glutamine residue and a glycine residue to form 2-imino-glutamine 5-imidazolinone glycine.
database_cross_reference: PubMed:11050230
database_cross_reference: PubMed:11209050
database_cross_reference: RESID:AA0189

Axiom
annotated source: 2-imino-glutamine 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: 2,N-didehydroglutaminyl-5-imidazolinone glycine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 2-imino-glutamine 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: 2-(3-carbamoyl-1-imino-propyl)-1-carboxymethyl-1-imidazolin-5-one
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 2-imino-glutamine 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: 2-imino-glutamine 5-imidazolinone glycine
has_synonym_type: Name from RESID

Axiom
annotated source: 2-imino-glutamine 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: CROSSLNK 2-iminomethyl-5-imidazolinone (Gln-Gly)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: 2-imino-glutamine 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: [2-(3-carbamoyl-1-imino-propyl)-5-oxo-4,5-dihydro-imidazol-1-yl]-acetic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 2-imino-glutamine 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: [2-(4-amino-4-oxobutanimidoyl)-5-oxo-4,5-dihydro-1H-imidazol-1-yl]acetic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: 2-imino-glutamine 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: fluorescent protein FP583 chromophore
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 2-imino-glutamine 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: para-hydroxybenzylidene-imidazolidinone chromophore
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 2-imino-glutamine 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: red fluorescent protein chromophore
has_synonym_type: Alternate name from RESID

D-alanine (Ala)
type: Class
subclass of: residues isobaric at 71.037114 Da
subclass of: MOD_00862
subclass of: MOD_00901
definition: A protein modification that effectively converts an L-alanine residue to D-alanine.
diff avg: 0.0
diff formula: C 0 H 0 N 0 O 0
diff mono: 0.0
formula: C 3 H 5 N 1 O 1
mass avg: 71.08
mass mono: 71.03712
origin: A
source: natural
database_cross_reference: uniprot.ptm:PTM-0112
has_exact_synonym: (R)-2-aminopropanoic acid
has_exact_synonym: D-Ala(Ala)
has_exact_synonym: D-alanine
has_exact_synonym: MOD_RES D-alanine (Ala)
has_obo_namespace: PSI-MOD
id: MOD:00198

Axiom
annotated source: D-alanine (Ala)
annotated property: definition
annotated target: A protein modification that effectively converts an L-alanine residue to D-alanine.
database_cross_reference: PubMed:15023056
database_cross_reference: PubMed:7287302
database_cross_reference: PubMed:7961627
database_cross_reference: RESID:AA0191#ALA

Axiom
annotated source: D-alanine (Ala)
annotated property: has_exact_synonym
annotated target: (R)-2-aminopropanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: D-alanine (Ala)
annotated property: has_exact_synonym
annotated target: D-Ala(Ala)
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: D-alanine (Ala)
annotated property: has_exact_synonym
annotated target: D-alanine
has_synonym_type: Name from RESID

Axiom
annotated source: D-alanine (Ala)
annotated property: has_exact_synonym
annotated target: MOD_RES D-alanine (Ala)
has_synonym_type: Protein feature description from UniProtKB

D-allo-isoleucine
type: Class
subclass of: residues isobaric at 113.084064 Da
subclass of: MOD_00664
subclass of: MOD_00910
definition: A protein modification that effectively converts an L-isoleucine residue to a D-allo-isoleucine.
diff avg: 0.0
diff formula: C 0 H 0 N 0 O 0
diff mono: 0.0
formula: C 6 H 11 N 1 O 1
mass avg: 113.16
mass mono: 113.08406
origin: I
source: natural
database_cross_reference: uniprot.ptm:PTM-0114
has_exact_synonym: (2R,3S)-2-amino-3-methylpentanoic acid
has_exact_synonym: 2-azanyl-3-methylpentanoic acid
has_exact_synonym: 3-methyl-norvaline
has_exact_synonym: D-Ile
has_exact_synonym: D-allo-isoleucine
has_exact_synonym: D-threo-isoleucine
has_exact_synonym: MOD_RES D-allo-isoleucine
has_exact_synonym: allo-D-isoleucine
has_exact_synonym: alpha-amino-beta-methylvaleric acid
has_obo_namespace: PSI-MOD
id: MOD:00199

Axiom
annotated source: D-allo-isoleucine
annotated property: definition
annotated target: A protein modification that effectively converts an L-isoleucine residue to a D-allo-isoleucine.
database_cross_reference: ChEBI:30007
database_cross_reference: PubMed:8223491
database_cross_reference: RESID:AA0192

Axiom
annotated source: D-allo-isoleucine
annotated property: has_exact_synonym
annotated target: (2R,3S)-2-amino-3-methylpentanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: D-allo-isoleucine
annotated property: has_exact_synonym
annotated target: 2-azanyl-3-methylpentanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: D-allo-isoleucine
annotated property: has_exact_synonym
annotated target: 3-methyl-norvaline
has_synonym_type: Alternate name from RESID

Axiom
annotated source: D-allo-isoleucine
annotated property: has_exact_synonym
annotated target: D-Ile
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: D-allo-isoleucine
annotated property: has_exact_synonym
annotated target: D-allo-isoleucine
has_synonym_type: Name from RESID

Axiom
annotated source: D-allo-isoleucine
annotated property: has_exact_synonym
annotated target: D-threo-isoleucine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: D-allo-isoleucine
annotated property: has_exact_synonym
annotated target: MOD_RES D-allo-isoleucine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: D-allo-isoleucine
annotated property: has_exact_synonym
annotated target: allo-D-isoleucine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: D-allo-isoleucine
annotated property: has_exact_synonym
annotated target: alpha-amino-beta-methylvaleric acid
has_synonym_type: Alternate name from RESID

D-methionine
type: Class
subclass of: MOD_00664
subclass of: MOD_00913
definition: A protein modification that effectively converts an L-methionine residue to D-methionine.
diff avg: 0.0
diff formula: C 0 H 0 N 0 O 0 S 0
diff mono: 0.0
formula: C 5 H 9 N 1 O 1 S 1
mass avg: 131.19
mass mono: 131.04048
origin: M
source: natural
database_cross_reference: uniprot.ptm:PTM-0120
has_exact_synonym: (2R)-2-amino-4-(methylsulfanyl)butanoic acid
has_exact_synonym: 2-amino-4-(methylthio)butanoic acid
has_exact_synonym: 2-amino-4-(methylthio)butyric acid
has_exact_synonym: D-Met
has_exact_synonym: D-methionine
has_exact_synonym: MOD_RES D-methionine
has_obo_namespace: PSI-MOD
id: MOD:00200

Axiom
annotated source: D-methionine
annotated property: definition
annotated target: A protein modification that effectively converts an L-methionine residue to D-methionine.
database_cross_reference: ChEBI:29984
database_cross_reference: PubMed:16033333
database_cross_reference: PubMed:2542051
database_cross_reference: RESID:AA0193

Axiom
annotated source: D-methionine
annotated property: has_exact_synonym
annotated target: (2R)-2-amino-4-(methylsulfanyl)butanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: D-methionine
annotated property: has_exact_synonym
annotated target: 2-amino-4-(methylthio)butanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: D-methionine
annotated property: has_exact_synonym
annotated target: 2-amino-4-(methylthio)butyric acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: D-methionine
annotated property: has_exact_synonym
annotated target: D-Met
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: D-methionine
annotated property: has_exact_synonym
annotated target: D-methionine
has_synonym_type: Name from RESID

Axiom
annotated source: D-methionine
annotated property: has_exact_synonym
annotated target: MOD_RES D-methionine
has_synonym_type: Protein feature description from UniProtKB

D-phenylalanine
type: Class
subclass of: MOD_00664
subclass of: MOD_00914
definition: A protein modification that effectively converts an L-phenylalanine residue to D-phenylalanine.
diff avg: 0.0
diff formula: C 0 H 0 N 0 O 0
diff mono: 0.0
formula: C 9 H 9 N 1 O 1
mass avg: 147.18
mass mono: 147.06842
origin: F
source: natural
database_cross_reference: uniprot.ptm:PTM-0121
has_exact_synonym: (R)-2-amino-3-phenylpropanoic acid
has_exact_synonym: D-Phe
has_exact_synonym: D-phenylalanine
has_exact_synonym: MOD_RES D-phenylalanine
has_obo_namespace: PSI-MOD
id: MOD:00201

Axiom
annotated source: D-phenylalanine
annotated property: definition
annotated target: A protein modification that effectively converts an L-phenylalanine residue to D-phenylalanine.
database_cross_reference: ChEBI:29996
database_cross_reference: PubMed:1548227
database_cross_reference: PubMed:1644179
database_cross_reference: PubMed:2597281
database_cross_reference: RESID:AA0194

Axiom
annotated source: D-phenylalanine
annotated property: has_exact_synonym
annotated target: (R)-2-amino-3-phenylpropanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: D-phenylalanine
annotated property: has_exact_synonym
annotated target: D-Phe
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: D-phenylalanine
annotated property: has_exact_synonym
annotated target: D-phenylalanine
has_synonym_type: Name from RESID

Axiom
annotated source: D-phenylalanine
annotated property: has_exact_synonym
annotated target: MOD_RES D-phenylalanine
has_synonym_type: Protein feature description from UniProtKB

D-serine (Ser)
type: Class
subclass of: MOD_00891
subclass of: MOD_00916
definition: A protein modification that effectively converts an L-serine residue to D-serine.
diff avg: 0.0
diff formula: C 0 H 0 N 0 O 0
diff mono: 0.0
formula: C 3 H 5 N 1 O 2
mass avg: 87.08
mass mono: 87.03203
origin: S
source: natural
database_cross_reference: uniprot.ptm:PTM-0308
has_exact_synonym: (R)-2-amino-3-hydroxypropanoic acid
has_exact_synonym: D-Ser(Ser)
has_exact_synonym: D-serine
has_exact_synonym: MOD_RES D-serine (Ser)
has_obo_namespace: PSI-MOD
id: MOD:00202

Axiom
annotated source: D-serine (Ser)
annotated property: definition
annotated target: A protein modification that effectively converts an L-serine residue to D-serine.
database_cross_reference: PubMed:7973665
database_cross_reference: RESID:AA0195#SER

Axiom
annotated source: D-serine (Ser)
annotated property: has_exact_synonym
annotated target: (R)-2-amino-3-hydroxypropanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: D-serine (Ser)
annotated property: has_exact_synonym
annotated target: D-Ser(Ser)
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: D-serine (Ser)
annotated property: has_exact_synonym
annotated target: D-serine
has_synonym_type: Name from RESID

Axiom
annotated source: D-serine (Ser)
annotated property: has_exact_synonym
annotated target: MOD_RES D-serine (Ser)
has_synonym_type: Protein feature description from UniProtKB

D-asparagine
type: Class
subclass of: MOD_00664
subclass of: MOD_00903
definition: A protein modification that effectively converts an L-asparagine residue to D-asparagine.
diff avg: 0.0
diff formula: C 0 H 0 N 0 O 0
diff mono: 0.0
formula: C 4 H 6 N 2 O 2
mass avg: 114.1
mass mono: 114.04293
origin: N
source: natural
database_cross_reference: uniprot.ptm:PTM-0115
has_exact_synonym: (R)-2-amino-4-butanediamic acid
has_exact_synonym: D-Asn
has_exact_synonym: D-alpha-aminosuccinamic acid
has_exact_synonym: D-asparagine
has_exact_synonym: D-aspartic acid beta-amide
has_exact_synonym: MOD_RES D-asparagine
has_obo_namespace: PSI-MOD
id: MOD:00203

Axiom
annotated source: D-asparagine
annotated property: definition
annotated target: A protein modification that effectively converts an L-asparagine residue to D-asparagine.
database_cross_reference: ChEBI:29957
database_cross_reference: PubMed:1859408
database_cross_reference: RESID:AA0196

Axiom
annotated source: D-asparagine
annotated property: has_exact_synonym
annotated target: (R)-2-amino-4-butanediamic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: D-asparagine
annotated property: has_exact_synonym
annotated target: D-Asn
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: D-asparagine
annotated property: has_exact_synonym
annotated target: D-alpha-aminosuccinamic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: D-asparagine
annotated property: has_exact_synonym
annotated target: D-asparagine
has_synonym_type: Name from RESID

Axiom
annotated source: D-asparagine
annotated property: has_exact_synonym
annotated target: D-aspartic acid beta-amide
has_synonym_type: Alternate name from RESID

Axiom
annotated source: D-asparagine
annotated property: has_exact_synonym
annotated target: MOD_RES D-asparagine
has_synonym_type: Protein feature description from UniProtKB

D-leucine
type: Class
subclass of: residues isobaric at 113.084064 Da
subclass of: MOD_00664
subclass of: MOD_00911
definition: A protein modification that effectively converts an L-leucine residue to D-leucine.
diff avg: 0.0
diff formula: C 0 H 0 N 0 O 0
diff mono: 0.0
formula: C 6 H 11 N 1 O 1
mass avg: 113.16
mass mono: 113.08406
origin: L
source: natural
database_cross_reference: uniprot.ptm:PTM-0119
has_exact_synonym: (2R)-2-amino-4-methylpentanoic acid
has_exact_synonym: D-Leu
has_exact_synonym: D-leucine
has_exact_synonym: MOD_RES D-leucine
has_exact_synonym: alpha-aminoisocaproic acid
has_obo_namespace: PSI-MOD
id: MOD:00204

Axiom
annotated source: D-leucine
annotated property: definition
annotated target: A protein modification that effectively converts an L-leucine residue to D-leucine.
database_cross_reference: ChEBI:30005
database_cross_reference: PubMed:10461743
database_cross_reference: PubMed:12135762
database_cross_reference: PubMed:1358533
database_cross_reference: PubMed:1548227
database_cross_reference: RESID:AA0197

Axiom
annotated source: D-leucine
annotated property: has_exact_synonym
annotated target: (2R)-2-amino-4-methylpentanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: D-leucine
annotated property: has_exact_synonym
annotated target: D-Leu
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: D-leucine
annotated property: has_exact_synonym
annotated target: D-leucine
has_synonym_type: Name from RESID

Axiom
annotated source: D-leucine
annotated property: has_exact_synonym
annotated target: MOD_RES D-leucine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: D-leucine
annotated property: has_exact_synonym
annotated target: alpha-aminoisocaproic acid
has_synonym_type: Alternate name from RESID

D-tryptophan
type: Class
subclass of: MOD_00664
subclass of: MOD_00918
definition: A protein modification that effectively converts an L-tryptophan residue to D-tryptophan.
diff avg: 0.0
diff formula: C 0 H 0 N 0 O 0
diff mono: 0.0
formula: C 11 H 10 N 2 O 1
mass avg: 186.21
mass mono: 186.07932
origin: W
source: natural
database_cross_reference: uniprot.ptm:PTM-0123
has_exact_synonym: (R)-2-amino-3-(1H-indol-3-yl)propanoic acid
has_exact_synonym: D-Trp
has_exact_synonym: D-tryptophan
has_exact_synonym: MOD_RES D-tryptophan
has_exact_synonym: alpha-amino-beta-(3-indolyl)propionoic acid
has_obo_namespace: PSI-MOD
id: MOD:00205

Axiom
annotated source: D-tryptophan
annotated property: definition
annotated target: A protein modification that effectively converts an L-tryptophan residue to D-tryptophan.
database_cross_reference: ChEBI:29955
database_cross_reference: PubMed:8910408
database_cross_reference: RESID:AA0198

Axiom
annotated source: D-tryptophan
annotated property: has_exact_synonym
annotated target: (R)-2-amino-3-(1H-indol-3-yl)propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: D-tryptophan
annotated property: has_exact_synonym
annotated target: D-Trp
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: D-tryptophan
annotated property: has_exact_synonym
annotated target: D-tryptophan
has_synonym_type: Name from RESID

Axiom
annotated source: D-tryptophan
annotated property: has_exact_synonym
annotated target: MOD_RES D-tryptophan
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: D-tryptophan
annotated property: has_exact_synonym
annotated target: alpha-amino-beta-(3-indolyl)propionoic acid
has_synonym_type: Alternate name from RESID

L-isoglutamyl-polyglycine
type: Class
subclass of: MOD_00906
definition: A protein modification that effectively converts an L-glutamic acid residue to L-isoglutamyl-polyglycine.
origin: E
source: natural
database_cross_reference: uniprot.ptm:PTM-0394
has_exact_synonym: L-isoglutamyl-polyglycine
has_exact_synonym: MOD_RES 5-glutamyl polyglycine
has_exact_synonym: gamma-glutamylpolyglycine
has_obo_namespace: PSI-MOD
id: MOD:00206

Axiom
annotated source: L-isoglutamyl-polyglycine
annotated property: definition
annotated target: A protein modification that effectively converts an L-glutamic acid residue to L-isoglutamyl-polyglycine.
database_cross_reference: ChEBI:21343
database_cross_reference: PubMed:10074368
database_cross_reference: PubMed:16368691
database_cross_reference: PubMed:7992051
database_cross_reference: RESID:AA0201

Axiom
annotated source: L-isoglutamyl-polyglycine
annotated property: has_exact_synonym
annotated target: L-isoglutamyl-polyglycine
has_synonym_type: Name from RESID

Axiom
annotated source: L-isoglutamyl-polyglycine
annotated property: has_exact_synonym
annotated target: MOD_RES 5-glutamyl polyglycine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-isoglutamyl-polyglycine
annotated property: has_exact_synonym
annotated target: gamma-glutamylpolyglycine
has_synonym_type: Alternate name from RESID

L-isoglutamyl-polyglutamic acid
type: Class
subclass of: MOD_00906
definition: A protein modification that effectively converts an L-glutamic acid residue to isoglutamyl-polyglutamic acid, forming an isopeptide bond with a polyglutamic acid.
origin: E
source: natural
database_cross_reference: uniprot.ptm:PTM-0395
has_exact_synonym: L-isoglutamyl-polyglutamic acid
has_exact_synonym: gamma-glutamylpolyglutamic acid
has_obo_namespace: PSI-MOD
id: MOD:00207

Axiom
annotated source: L-isoglutamyl-polyglutamic acid
annotated property: definition
annotated target: A protein modification that effectively converts an L-glutamic acid residue to isoglutamyl-polyglutamic acid, forming an isopeptide bond with a polyglutamic acid.
database_cross_reference: PubMed:10747868
database_cross_reference: PubMed:1680872
database_cross_reference: RESID:AA0202

Axiom
annotated source: L-isoglutamyl-polyglutamic acid
annotated property: has_exact_synonym
annotated target: L-isoglutamyl-polyglutamic acid
has_synonym_type: Name from RESID

Axiom
annotated source: L-isoglutamyl-polyglutamic acid
annotated property: has_exact_synonym
annotated target: gamma-glutamylpolyglutamic acid
has_synonym_type: Alternate name from RESID

O4'-(phospho-5'-adenosine)-L-tyrosine
type: Class
subclass of: MOD_00919
subclass of: MOD_01165
definition: A protein modification that effectively crosslinks an L-tyrosine residue and 5'-phosphoadenosine through a phosphodiester bond to form O4'-(phospho-5'-adenosine)-L-tyrosine.
diff avg: 329.21
diff formula: C 10 H 12 N 5 O 6 P 1
diff mono: 329.05252
formula: C 19 H 21 N 6 O 8 P 1
mass avg: 492.38
mass mono: 492.11584
origin: Y
source: natural
database_cross_reference: Unimod:405
database_cross_reference: uniprot.ptm:PTM-0332
has_exact_synonym: (2S)-2-amino-3-[4-(5'-adenosine phosphonoxy)phenyl]propanoic acid
has_exact_synonym: 5'-adenylic-O-tyrosine
has_exact_synonym: MOD_RES O-AMP-tyrosine
has_exact_synonym: O-5'-Adenosylation ( of Tyrosine)
has_exact_synonym: O4'-(phospho-5'-adenosine)-L-tyrosine
has_exact_synonym: O4'-L-tyrosine 5'-adenosine phosphodiester
has_exact_synonym: OAMPTyr
has_exact_synonym: hydrogen 5'-adenylate tyrosine ester
has_obo_namespace: PSI-MOD
has_related_synonym: AMP binding site
has_related_synonym: Phosphoadenosine
id: MOD:00208
in_subset: PSI-MOD-slim
comment: From DeltaMass: Average Mass: 329.

Axiom
annotated source: O4'-(phospho-5'-adenosine)-L-tyrosine
annotated property: definition
annotated target: A protein modification that effectively crosslinks an L-tyrosine residue and 5'-phosphoadenosine through a phosphodiester bond to form O4'-(phospho-5'-adenosine)-L-tyrosine.
database_cross_reference: DeltaMass:0
database_cross_reference: PubMed:5543675
database_cross_reference: RESID:AA0203
database_cross_reference: Unimod:405#Y

Axiom
annotated source: O4'-(phospho-5'-adenosine)-L-tyrosine
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-3-[4-(5'-adenosine phosphonoxy)phenyl]propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: O4'-(phospho-5'-adenosine)-L-tyrosine
annotated property: has_exact_synonym
annotated target: 5'-adenylic-O-tyrosine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O4'-(phospho-5'-adenosine)-L-tyrosine
annotated property: has_exact_synonym
annotated target: MOD_RES O-AMP-tyrosine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: O4'-(phospho-5'-adenosine)-L-tyrosine
annotated property: has_exact_synonym
annotated target: O-5'-Adenosylation ( of Tyrosine)
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: O4'-(phospho-5'-adenosine)-L-tyrosine
annotated property: has_exact_synonym
annotated target: O4'-(phospho-5'-adenosine)-L-tyrosine
has_synonym_type: Name from RESID

Axiom
annotated source: O4'-(phospho-5'-adenosine)-L-tyrosine
annotated property: has_exact_synonym
annotated target: O4'-L-tyrosine 5'-adenosine phosphodiester
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O4'-(phospho-5'-adenosine)-L-tyrosine
annotated property: has_exact_synonym
annotated target: OAMPTyr
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: O4'-(phospho-5'-adenosine)-L-tyrosine
annotated property: has_exact_synonym
annotated target: hydrogen 5'-adenylate tyrosine ester
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O4'-(phospho-5'-adenosine)-L-tyrosine
annotated property: has_related_synonym
annotated target: AMP binding site
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: O4'-(phospho-5'-adenosine)-L-tyrosine
annotated property: has_related_synonym
annotated target: Phosphoadenosine
has_synonym_type: Agreed label from MS community

S-(2-aminovinyl)-D-cysteine (Cys-Ser)
type: Class
subclass of: MOD_01850
subclass of: MOD_02055
definition: A protein modification that effectively cross-links an L-cysteine residue and an L-serine residue by a thioether bond to form S-(2-aminovinyl)-D-cysteine.
diff avg: -64.04
diff formula: C -1 H -4 N 0 O -3 S 0
diff mono: -64.016045
formula: C 5 H 7 N 2 O 1 S 1
mass avg: 143.18
mass mono: 143.02791
origin: C, S
term spec: C-term
database_cross_reference: uniprot.ptm:PTM-0268
has_exact_synonym: (2S)-2-amino-3-([(Z)-2-aminoethenyl]sulfanyl)propanoic acid
has_exact_synonym: (S,Z)-S-(2-aminovinyl)cysteine
has_exact_synonym: CROSSLNK S-(2-aminovinyl)-D-cysteine (Ser-Cys)
has_exact_synonym: S-(2-aminovinyl)-D-cysteine
has_exact_synonym: XLNK-(D)SCys-VinAm
has_obo_namespace: PSI-MOD
id: MOD:00209
comment: Cross-link 2.

Axiom
annotated source: S-(2-aminovinyl)-D-cysteine (Cys-Ser)
annotated property: definition
annotated target: A protein modification that effectively cross-links an L-cysteine residue and an L-serine residue by a thioether bond to form S-(2-aminovinyl)-D-cysteine.
database_cross_reference: PubMed:3181159
database_cross_reference: PubMed:3769923
database_cross_reference: RESID:AA0204#SER

Axiom
annotated source: S-(2-aminovinyl)-D-cysteine (Cys-Ser)
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-3-([(Z)-2-aminoethenyl]sulfanyl)propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: S-(2-aminovinyl)-D-cysteine (Cys-Ser)
annotated property: has_exact_synonym
annotated target: (S,Z)-S-(2-aminovinyl)cysteine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-(2-aminovinyl)-D-cysteine (Cys-Ser)
annotated property: has_exact_synonym
annotated target: CROSSLNK S-(2-aminovinyl)-D-cysteine (Ser-Cys)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: S-(2-aminovinyl)-D-cysteine (Cys-Ser)
annotated property: has_exact_synonym
annotated target: S-(2-aminovinyl)-D-cysteine
has_synonym_type: Name from RESID

Axiom
annotated source: S-(2-aminovinyl)-D-cysteine (Cys-Ser)
annotated property: has_exact_synonym
annotated target: XLNK-(D)SCys-VinAm
has_synonym_type: Short label curated by PSI-MOD

L-cysteine sulfenic acid
type: Class
subclass of: MOD_00708
subclass of: MOD_01854
definition: A protein modification that effectively monooxygenates an L-cysteine residue to L-cysteine sulfenic acid.
diff avg: 16.0
diff formula: C 0 H 0 N 0 O 1 S 0
diff mono: 15.994915
formula: C 3 H 5 N 1 O 2 S 1
mass avg: 119.14
mass mono: 119.0041
origin: C
source: natural
database_cross_reference: Unimod:35
database_cross_reference: uniprot.ptm:PTM-0107
has_exact_synonym: (2R)-2-amino-3-(hydroxysulfanyl)propanoic acid
has_exact_synonym: (2R)-2-amino-3-(oxido-lambda(4)-sulfanyl)propanoic acid [tautomer]
has_exact_synonym: 2-amino-2-carboxyethanesulfenic acid
has_exact_synonym: 2-amino-3-sulfinylpropanoic acid [tautomer]
has_exact_synonym: 3-sulfenoalanine
has_exact_synonym: ACT_SITE Cysteine sulfenic acid (-SOH) intermediate
has_exact_synonym: CysOH
has_exact_synonym: L-cysteine sulfenic acid
has_exact_synonym: MOD_RES Cysteine sulfenic acid (-SOH)
has_exact_synonym: S-hydroxycysteine
has_exact_synonym: S-oxocysteine [tautomer]
has_exact_synonym: S-oxycysteine [tautomer]
has_exact_synonym: Sulfenic Acid (from Cysteine)
has_exact_synonym: cysteine S-oxide [tautomer]
has_exact_synonym: cysteine sulfoxide [tautomer]
has_exact_synonym: cysteine sulphenic acid
has_exact_synonym: mod193
has_obo_namespace: PSI-MOD
has_related_synonym: Oxidation
id: MOD:00210
in_subset: PSI-MOD-slim
comment: From DeltaMass: Average Mass: 16 Average Mass Change:16 Notes:Green et al. in J. B. C. 270, 18209-18211 (1995) quote Kim and Raines in Eur. J. Biochem. 224, 109-114 (1994). Kim and Raines using ESI-MS and sulfhydryl group titration found that bovine seminal ribonuclease contains a single oxidized sulfhydryl group, which cannot participate in a disulfide bond. This form of cysteine is called sulfenic acid (-SOH).

Axiom
annotated source: L-cysteine sulfenic acid
annotated property: definition
annotated target: A protein modification that effectively monooxygenates an L-cysteine residue to L-cysteine sulfenic acid.
database_cross_reference: DeltaMass:41
database_cross_reference: OMSSA:193
database_cross_reference: PubMed:10964927
database_cross_reference: PubMed:2501303
database_cross_reference: PubMed:8756456
database_cross_reference: PubMed:9214307
database_cross_reference: PubMed:9586994
database_cross_reference: PubMed:9587003
database_cross_reference: RESID:AA0205
database_cross_reference: Unimod:35#C

Axiom
annotated source: L-cysteine sulfenic acid
annotated property: has_exact_synonym
annotated target: (2R)-2-amino-3-(hydroxysulfanyl)propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-cysteine sulfenic acid
annotated property: has_exact_synonym
annotated target: (2R)-2-amino-3-(oxido-lambda(4)-sulfanyl)propanoic acid [tautomer]
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteine sulfenic acid
annotated property: has_exact_synonym
annotated target: 2-amino-2-carboxyethanesulfenic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteine sulfenic acid
annotated property: has_exact_synonym
annotated target: 2-amino-3-sulfinylpropanoic acid [tautomer]
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteine sulfenic acid
annotated property: has_exact_synonym
annotated target: 3-sulfenoalanine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteine sulfenic acid
annotated property: has_exact_synonym
annotated target: ACT_SITE Cysteine sulfenic acid (-SOH) intermediate
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-cysteine sulfenic acid
annotated property: has_exact_synonym
annotated target: CysOH
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-cysteine sulfenic acid
annotated property: has_exact_synonym
annotated target: L-cysteine sulfenic acid
has_synonym_type: Name from RESID

Axiom
annotated source: L-cysteine sulfenic acid
annotated property: has_exact_synonym
annotated target: MOD_RES Cysteine sulfenic acid (-SOH)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-cysteine sulfenic acid
annotated property: has_exact_synonym
annotated target: S-hydroxycysteine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteine sulfenic acid
annotated property: has_exact_synonym
annotated target: S-oxocysteine [tautomer]
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteine sulfenic acid
annotated property: has_exact_synonym
annotated target: S-oxycysteine [tautomer]
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteine sulfenic acid
annotated property: has_exact_synonym
annotated target: Sulfenic Acid (from Cysteine)
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: L-cysteine sulfenic acid
annotated property: has_exact_synonym
annotated target: cysteine S-oxide [tautomer]
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteine sulfenic acid
annotated property: has_exact_synonym
annotated target: cysteine sulfoxide [tautomer]
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteine sulfenic acid
annotated property: has_exact_synonym
annotated target: cysteine sulphenic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteine sulfenic acid
annotated property: has_exact_synonym
annotated target: mod193
has_synonym_type: Short label from OMSSA

Axiom
annotated source: L-cysteine sulfenic acid
annotated property: has_related_synonym
annotated target: Oxidation
has_synonym_type: Agreed label from MS community

S-(glycyl)-L-cysteine (Cys-Gly)
type: Class
subclass of: thioester crosslinked residues
subclass of: MOD_00954
subclass of: MOD_02047
definition: A protein modification that effectively crosslinks an L-cysteine residue and a glycine residue by a thioester bond to form S-glycyl-L-cysteine.
diff avg: -18.02
diff formula: C 0 H -2 N 0 O -1 S 0
diff mono: -18.010565
formula: C 5 H 7 N 2 O 2 S 1
mass avg: 159.18
mass mono: 159.02283
origin: C, G
term spec: C-term
database_cross_reference: uniprot.ptm:PTM-0429
has_exact_synonym: (2R)-2-amino-3-[(aminoacetyl)sulfanyl]propanoic acid
has_exact_synonym: 1-(cystein-S-yl)-glycinate
has_exact_synonym: ACT_SITE Glycyl thioester intermediate
has_exact_synonym: S-(2-amino-1-oxoethyl)cysteine
has_exact_synonym: S-(glycyl)-L-cysteine
has_exact_synonym: XLNK-SCys-1Gly
has_exact_synonym: glycine cysteine thioester
has_obo_namespace: PSI-MOD
id: MOD:00211
in_subset: PSI-MOD-slim
comment: Cross-link 2. For the modification of a C-terminal glycine by formation of a thioester bond with free L-cysteine see MOD:01777 [JSG].

Axiom
annotated source: S-(glycyl)-L-cysteine (Cys-Gly)
annotated property: definition
annotated target: A protein modification that effectively crosslinks an L-cysteine residue and a glycine residue by a thioester bond to form S-glycyl-L-cysteine.
database_cross_reference: ChEBI:22050
database_cross_reference: PubMed:3306404
database_cross_reference: RESID:AA0206

Axiom
annotated source: S-(glycyl)-L-cysteine (Cys-Gly)
annotated property: has_exact_synonym
annotated target: (2R)-2-amino-3-[(aminoacetyl)sulfanyl]propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: S-(glycyl)-L-cysteine (Cys-Gly)
annotated property: has_exact_synonym
annotated target: 1-(cystein-S-yl)-glycinate
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-(glycyl)-L-cysteine (Cys-Gly)
annotated property: has_exact_synonym
annotated target: ACT_SITE Glycyl thioester intermediate
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: S-(glycyl)-L-cysteine (Cys-Gly)
annotated property: has_exact_synonym
annotated target: S-(2-amino-1-oxoethyl)cysteine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-(glycyl)-L-cysteine (Cys-Gly)
annotated property: has_exact_synonym
annotated target: S-(glycyl)-L-cysteine
has_synonym_type: Name from RESID

Axiom
annotated source: S-(glycyl)-L-cysteine (Cys-Gly)
annotated property: has_exact_synonym
annotated target: XLNK-SCys-1Gly
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: S-(glycyl)-L-cysteine (Cys-Gly)
annotated property: has_exact_synonym
annotated target: glycine cysteine thioester
has_synonym_type: Alternate name from RESID

S-4-hydroxycinnamyl-L-cysteine
type: Class
subclass of: MOD_00905
definition: A protein modification that effectively converts an L-cysteine residue to S-4-hydroxycinnamyl-L-cysteine.
diff avg: 146.14
diff formula: C 9 H 6 N 0 O 2 S 0
diff mono: 146.03677
formula: C 12 H 11 N 1 O 3 S 1
mass avg: 249.28
mass mono: 249.04596
origin: C
source: natural
database_cross_reference: Unimod:407
database_cross_reference: uniprot.ptm:PTM-0414
has_exact_synonym: (2R)-2-amino-3-([(2E)-3-(4-hydroxyphenyl)prop-2-enoyl]sulfanyl)propanoic acid
has_exact_synonym: MOD_RES S-(4-hydroxycinnamyl)cysteine
has_exact_synonym: S-4-hydroxycinnamyl-L-cysteine
has_exact_synonym: S-para-coumaryl-L-cysteine
has_exact_synonym: cinnamate cysteine thioester
has_obo_namespace: PSI-MOD
has_related_synonym: Hydroxycinnamyl
has_related_synonym: hydroxycinnamyl
id: MOD:00212

Axiom
annotated source: S-4-hydroxycinnamyl-L-cysteine
annotated property: definition
annotated target: A protein modification that effectively converts an L-cysteine residue to S-4-hydroxycinnamyl-L-cysteine.
database_cross_reference: PubMed:7947803
database_cross_reference: PubMed:7981196
database_cross_reference: RESID:AA0207
database_cross_reference: Unimod:407

Axiom
annotated source: S-4-hydroxycinnamyl-L-cysteine
annotated property: has_exact_synonym
annotated target: (2R)-2-amino-3-([(2E)-3-(4-hydroxyphenyl)prop-2-enoyl]sulfanyl)propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: S-4-hydroxycinnamyl-L-cysteine
annotated property: has_exact_synonym
annotated target: MOD_RES S-(4-hydroxycinnamyl)cysteine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: S-4-hydroxycinnamyl-L-cysteine
annotated property: has_exact_synonym
annotated target: S-4-hydroxycinnamyl-L-cysteine
has_synonym_type: Name from RESID

Axiom
annotated source: S-4-hydroxycinnamyl-L-cysteine
annotated property: has_exact_synonym
annotated target: S-para-coumaryl-L-cysteine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-4-hydroxycinnamyl-L-cysteine
annotated property: has_exact_synonym
annotated target: cinnamate cysteine thioester
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-4-hydroxycinnamyl-L-cysteine
annotated property: has_related_synonym
annotated target: Hydroxycinnamyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: S-4-hydroxycinnamyl-L-cysteine
annotated property: has_related_synonym
annotated target: hydroxycinnamyl
has_synonym_type: Description (full_name) from Unimod

chondroitin sulfate D-glucuronosyl-D-galactosyl-D-galactosyl-D-xylosyl-L-serine
type: Class
subclass of: O-glycosyl-L-serine
definition: A protein modification that effectively cross-links an L-serine residue to the polymer chondroitin sulfate by a D-glucuronosyl-D-galactosyl-D-galactosyl-D-xylosyl tetrasaccharide.
origin: S
source: natural
has_exact_synonym: chondroitin 4-sulfate (chondroitin sulfate A)
has_exact_synonym: chondroitin 6-sulfate (chondroitin sulfate C)
has_exact_synonym: chondroitin sulfate D-glucuronosyl-D-galactosyl-D-galactosyl-D-xylosyl-L-serine
has_exact_synonym: poly[beta-1,4-D-glucopyranuronosyl-beta-1,3-(2-acetamido-2-deoxy-4-sulfate-D-galactosyl)]-beta-1,4-D-glucopyranuronosyl-beta-1,3-D-galactosyl-beta-1,3-D-galactosyl-beta-1,4-D-xylosyl-beta-1,3-L-serine; poly[beta-1,4-D-glucopyranuronosyl-beta-1,3-(2-acetamido-2-deoxy-6-sulfate D-galactosyl)]-beta-1,4-D-glucopyranuronosyl-beta-1,3-D-galactosyl-beta-1,3-D-galactosyl-beta-1,4-D-xylosyl-beta-1,3-L-serine
has_obo_namespace: PSI-MOD
id: MOD:00213

Axiom
annotated source: chondroitin sulfate D-glucuronosyl-D-galactosyl-D-galactosyl-D-xylosyl-L-serine
annotated property: definition
annotated target: A protein modification that effectively cross-links an L-serine residue to the polymer chondroitin sulfate by a D-glucuronosyl-D-galactosyl-D-galactosyl-D-xylosyl tetrasaccharide.
database_cross_reference: PubMed:1794445
database_cross_reference: PubMed:1898736
database_cross_reference: PubMed:3472204
database_cross_reference: RESID:AA0208

Axiom
annotated source: chondroitin sulfate D-glucuronosyl-D-galactosyl-D-galactosyl-D-xylosyl-L-serine
annotated property: has_exact_synonym
annotated target: chondroitin 4-sulfate (chondroitin sulfate A)
has_synonym_type: Alternate name from RESID

Axiom
annotated source: chondroitin sulfate D-glucuronosyl-D-galactosyl-D-galactosyl-D-xylosyl-L-serine
annotated property: has_exact_synonym
annotated target: chondroitin 6-sulfate (chondroitin sulfate C)
has_synonym_type: Alternate name from RESID

Axiom
annotated source: chondroitin sulfate D-glucuronosyl-D-galactosyl-D-galactosyl-D-xylosyl-L-serine
annotated property: has_exact_synonym
annotated target: chondroitin sulfate D-glucuronosyl-D-galactosyl-D-galactosyl-D-xylosyl-L-serine
has_synonym_type: Name from RESID

Axiom
annotated source: chondroitin sulfate D-glucuronosyl-D-galactosyl-D-galactosyl-D-xylosyl-L-serine
annotated property: has_exact_synonym
annotated target: poly[beta-1,4-D-glucopyranuronosyl-beta-1,3-(2-acetamido-2-deoxy-4-sulfate-D-galactosyl)]-beta-1,4-D-glucopyranuronosyl-beta-1,3-D-galactosyl-beta-1,3-D-galactosyl-beta-1,4-D-xylosyl-beta-1,3-L-serine; poly[beta-1,4-D-glucopyranuronosyl-beta-1,3-(2-acetamido-2-deoxy-6-sulfate D-galactosyl)]-beta-1,4-D-glucopyranuronosyl-beta-1,3-D-galactosyl-beta-1,3-D-galactosyl-beta-1,4-D-xylosyl-beta-1,3-L-serine
has_synonym_type: Systematic name from RESID

dermatan 4-sulfate D-glucuronosyl-D-galactosyl-D-galactosyl-D-xylosyl-L-serine
type: Class
subclass of: O-glycosyl-L-serine
definition: A protein modification that effectively cross-links an L-serine residue to the polymer dermatan 4-sulfate by a D-glucuronosyl-D-galactosyl-D-galactosyl-D-xylosyl tetrasaccharide.
origin: S
source: natural
has_exact_synonym: beta-heparin
has_exact_synonym: chondroitin sulfate B
has_exact_synonym: dermatan 4-sulfate D-glucuronosyl-D-galactosyl-D-galactosyl-D-xylosyl-L-serine
has_exact_synonym: poly[beta-1,4-L-idopyranuronosyl-alpha-1,3-(2-acetamido-2-deoxy-4-sulfate D-galactosyl)]-beta-1,4-D-glucopyranuronosyl-beta-1,3-D-galactosyl-beta-1,3-D-galactosyl-beta-1,4-D-xylosyl-beta-1,3-L-serine
has_obo_namespace: PSI-MOD
id: MOD:00214

Axiom
annotated source: dermatan 4-sulfate D-glucuronosyl-D-galactosyl-D-galactosyl-D-xylosyl-L-serine
annotated property: definition
annotated target: A protein modification that effectively cross-links an L-serine residue to the polymer dermatan 4-sulfate by a D-glucuronosyl-D-galactosyl-D-galactosyl-D-xylosyl tetrasaccharide.
database_cross_reference: PubMed:2914936
database_cross_reference: PubMed:3472204
database_cross_reference: RESID:AA0209

Axiom
annotated source: dermatan 4-sulfate D-glucuronosyl-D-galactosyl-D-galactosyl-D-xylosyl-L-serine
annotated property: has_exact_synonym
annotated target: beta-heparin
has_synonym_type: Alternate name from RESID

Axiom
annotated source: dermatan 4-sulfate D-glucuronosyl-D-galactosyl-D-galactosyl-D-xylosyl-L-serine
annotated property: has_exact_synonym
annotated target: chondroitin sulfate B
has_synonym_type: Alternate name from RESID

Axiom
annotated source: dermatan 4-sulfate D-glucuronosyl-D-galactosyl-D-galactosyl-D-xylosyl-L-serine
annotated property: has_exact_synonym
annotated target: dermatan 4-sulfate D-glucuronosyl-D-galactosyl-D-galactosyl-D-xylosyl-L-serine
has_synonym_type: Name from RESID

Axiom
annotated source: dermatan 4-sulfate D-glucuronosyl-D-galactosyl-D-galactosyl-D-xylosyl-L-serine
annotated property: has_exact_synonym
annotated target: poly[beta-1,4-L-idopyranuronosyl-alpha-1,3-(2-acetamido-2-deoxy-4-sulfate D-galactosyl)]-beta-1,4-D-glucopyranuronosyl-beta-1,3-D-galactosyl-beta-1,3-D-galactosyl-beta-1,4-D-xylosyl-beta-1,3-L-serine
has_synonym_type: Systematic name from RESID

heparan sulfate D-glucuronosyl-D-galactosyl-D-galactosyl-D-xylosyl-L-serine
type: Class
subclass of: O-glycosyl-L-serine
definition: A protein modification that effectively cross-links an L-serine residue to the polymer heparan sulfate by a D-glucuronosyl-D-galactosyl-D-galactosyl-D-xylosyl tetrasaccharide.
origin: S
source: natural
has_exact_synonym: heparan sulfate D-glucuronosyl-D-galactosyl-D-galactosyl-D-xylosyl-L-serine
has_exact_synonym: heparin
has_exact_synonym: heparitin sulfate
has_exact_synonym: poly[alpha-1,4-(2-sulfate D-glucopyranuronosyl)-beta-1,4-(2-sulfamino-2-deoxy-6-sulfate D-glucosyl)]-beta-1,4-D-glucopyranuronosyl-beta-1,3-D-galactosyl-beta-1,3-D-galactosyl-beta-1,4-D-xylosyl-beta-1,3-L-serine
has_obo_namespace: PSI-MOD
id: MOD:00215

Axiom
annotated source: heparan sulfate D-glucuronosyl-D-galactosyl-D-galactosyl-D-xylosyl-L-serine
annotated property: definition
annotated target: A protein modification that effectively cross-links an L-serine residue to the polymer heparan sulfate by a D-glucuronosyl-D-galactosyl-D-galactosyl-D-xylosyl tetrasaccharide.
database_cross_reference: PubMed:3472204
database_cross_reference: RESID:AA0210

Axiom
annotated source: heparan sulfate D-glucuronosyl-D-galactosyl-D-galactosyl-D-xylosyl-L-serine
annotated property: has_exact_synonym
annotated target: heparan sulfate D-glucuronosyl-D-galactosyl-D-galactosyl-D-xylosyl-L-serine
has_synonym_type: Name from RESID

Axiom
annotated source: heparan sulfate D-glucuronosyl-D-galactosyl-D-galactosyl-D-xylosyl-L-serine
annotated property: has_exact_synonym
annotated target: heparin
has_synonym_type: Alternate name from RESID

Axiom
annotated source: heparan sulfate D-glucuronosyl-D-galactosyl-D-galactosyl-D-xylosyl-L-serine
annotated property: has_exact_synonym
annotated target: heparitin sulfate
has_synonym_type: Alternate name from RESID

Axiom
annotated source: heparan sulfate D-glucuronosyl-D-galactosyl-D-galactosyl-D-xylosyl-L-serine
annotated property: has_exact_synonym
annotated target: poly[alpha-1,4-(2-sulfate D-glucopyranuronosyl)-beta-1,4-(2-sulfamino-2-deoxy-6-sulfate D-glucosyl)]-beta-1,4-D-glucopyranuronosyl-beta-1,3-D-galactosyl-beta-1,3-D-galactosyl-beta-1,4-D-xylosyl-beta-1,3-L-serine
has_synonym_type: Systematic name from RESID

N6-formyl-L-lysine
type: Class
subclass of: N-formylated residue
subclass of: MOD_01875
definition: A protein modification that effectively converts an L-lysine residue to N6-formyl-L-lysine.
diff avg: 28.01
diff formula: C 1 H 0 N 0 O 1
diff mono: 27.994915
formula: C 7 H 12 N 2 O 2
mass avg: 156.19
mass mono: 156.08987
origin: K
source: natural
database_cross_reference: Unimod:122
database_cross_reference: uniprot.ptm:PTM-0192
has_exact_synonym: (2S)-2-amino-6-(formylamino)hexanoic acid
has_exact_synonym: MOD_RES N6-formyllysine
has_exact_synonym: N(zeta)-formyllysine
has_exact_synonym: N6-formyl-L-lysine
has_exact_synonym: N6-formylated L-lysine
has_exact_synonym: N6FoLys
has_exact_synonym: epsilon-formyllysine
has_exact_synonym: formylk
has_obo_namespace: PSI-MOD
has_related_synonym: Formyl
has_related_synonym: Formylation
id: MOD:00216
in_subset: PSI-MOD-slim

Axiom
annotated source: N6-formyl-L-lysine
annotated property: definition
annotated target: A protein modification that effectively converts an L-lysine residue to N6-formyl-L-lysine.
database_cross_reference: OMSSA:43
database_cross_reference: PubMed:15799070
database_cross_reference: RESID:AA0211
database_cross_reference: Unimod:122#K

Axiom
annotated source: N6-formyl-L-lysine
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-6-(formylamino)hexanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N6-formyl-L-lysine
annotated property: has_exact_synonym
annotated target: MOD_RES N6-formyllysine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N6-formyl-L-lysine
annotated property: has_exact_synonym
annotated target: N(zeta)-formyllysine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N6-formyl-L-lysine
annotated property: has_exact_synonym
annotated target: N6-formyl-L-lysine
has_synonym_type: Name from RESID

Axiom
annotated source: N6-formyl-L-lysine
annotated property: has_exact_synonym
annotated target: N6-formylated L-lysine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: N6-formyl-L-lysine
annotated property: has_exact_synonym
annotated target: N6FoLys
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: N6-formyl-L-lysine
annotated property: has_exact_synonym
annotated target: epsilon-formyllysine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N6-formyl-L-lysine
annotated property: has_exact_synonym
annotated target: formylk
has_synonym_type: Short label from OMSSA

Axiom
annotated source: N6-formyl-L-lysine
annotated property: has_related_synonym
annotated target: Formyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: N6-formyl-L-lysine
annotated property: has_related_synonym
annotated target: Formylation
has_synonym_type: Description (full_name) from Unimod

O4-arabinosyl-L-hydroxyproline
type: Class
subclass of: O-glycosylated residue
subclass of: MOD_00915
definition: A protein modification that effectively converts an L-proline residue to O4-arabinosyl-L-hydroxyproline.
diff avg: 148.11
diff formula: C 5 H 8 N 0 O 5
diff mono: 148.03717
formula: C 10 H 15 N 1 O 6
mass avg: 245.23
mass mono: 245.08994
origin: P
source: natural
database_cross_reference: Unimod:408
database_cross_reference: uniprot.ptm:PTM-0545
has_exact_synonym: (2S,4R)-4-(beta-L-arabinofuranosyloxy)pyrrolidine-2-carboxylic acid
has_exact_synonym: 4-(beta-L-arabinofuranosyloxy)proline
has_exact_synonym: 4-Glycosyloxy- (pentosyl,C5) (of Proline)
has_exact_synonym: O4-arabinosyl-L-hydroxyproline
has_exact_synonym: O4-glycosyl-hydroxyproline
has_exact_synonym: OAra4HyPro
has_exact_synonym: beta-arabinofuranosyl-4-hydroxyproline
has_obo_namespace: PSI-MOD
has_related_synonym: Glycosyl
has_related_synonym: glycosyl-L-hydroxyproline
id: MOD:00217
in_subset: PSI-MOD-slim
comment: secondary to RESID:AA0030; From DeltaMass: Average Mass: 147.

Axiom
annotated source: O4-arabinosyl-L-hydroxyproline
annotated property: definition
annotated target: A protein modification that effectively converts an L-proline residue to O4-arabinosyl-L-hydroxyproline.
database_cross_reference: DeltaMass:0
database_cross_reference: PubMed:666730
database_cross_reference: PubMed:7852316
database_cross_reference: RESID:AA0212
database_cross_reference: Unimod:408

Axiom
annotated source: O4-arabinosyl-L-hydroxyproline
annotated property: has_exact_synonym
annotated target: (2S,4R)-4-(beta-L-arabinofuranosyloxy)pyrrolidine-2-carboxylic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: O4-arabinosyl-L-hydroxyproline
annotated property: has_exact_synonym
annotated target: 4-(beta-L-arabinofuranosyloxy)proline
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O4-arabinosyl-L-hydroxyproline
annotated property: has_exact_synonym
annotated target: 4-Glycosyloxy- (pentosyl,C5) (of Proline)
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: O4-arabinosyl-L-hydroxyproline
annotated property: has_exact_synonym
annotated target: O4-arabinosyl-L-hydroxyproline
has_synonym_type: Name from RESID

Axiom
annotated source: O4-arabinosyl-L-hydroxyproline
annotated property: has_exact_synonym
annotated target: O4-glycosyl-hydroxyproline
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O4-arabinosyl-L-hydroxyproline
annotated property: has_exact_synonym
annotated target: OAra4HyPro
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: O4-arabinosyl-L-hydroxyproline
annotated property: has_exact_synonym
annotated target: beta-arabinofuranosyl-4-hydroxyproline
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O4-arabinosyl-L-hydroxyproline
annotated property: has_related_synonym
annotated target: Glycosyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: O4-arabinosyl-L-hydroxyproline
annotated property: has_related_synonym
annotated target: glycosyl-L-hydroxyproline
has_synonym_type: Description (full_name) from Unimod

O-(phospho-5'-RNA)-L-serine
type: Class
subclass of: MOD_00751
subclass of: MOD_00916
definition: A protein modification that effectively crosslinks an L-serine residue and the 5'-end of RNA through a phosphodiester to form O4'-(phospho-5'-RNA)-L-serine.
origin: S
source: natural
database_cross_reference: uniprot.ptm:PTM-0227
has_exact_synonym: (S)-2-amino-3-(5'-ribonucleic acid phosphonoxy)propanoic acid
has_exact_synonym: MOD_RES O-(5'-phospho-RNA)-serine
has_exact_synonym: O-(phospho-5'-RNA)-L-serine
has_exact_synonym: O3-(phospho-5'-RNA)-L-serine
has_exact_synonym: O3-L-serine 5'-RNA phosphodiester
has_obo_namespace: PSI-MOD
id: MOD:00218

Axiom
annotated source: O-(phospho-5'-RNA)-L-serine
annotated property: definition
annotated target: A protein modification that effectively crosslinks an L-serine residue and the 5'-end of RNA through a phosphodiester to form O4'-(phospho-5'-RNA)-L-serine.
database_cross_reference: PubMed:1705009
database_cross_reference: RESID:AA0213

Axiom
annotated source: O-(phospho-5'-RNA)-L-serine
annotated property: has_exact_synonym
annotated target: (S)-2-amino-3-(5'-ribonucleic acid phosphonoxy)propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: O-(phospho-5'-RNA)-L-serine
annotated property: has_exact_synonym
annotated target: MOD_RES O-(5'-phospho-RNA)-serine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: O-(phospho-5'-RNA)-L-serine
annotated property: has_exact_synonym
annotated target: O-(phospho-5'-RNA)-L-serine
has_synonym_type: Name from RESID

Axiom
annotated source: O-(phospho-5'-RNA)-L-serine
annotated property: has_exact_synonym
annotated target: O3-(phospho-5'-RNA)-L-serine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-(phospho-5'-RNA)-L-serine
annotated property: has_exact_synonym
annotated target: O3-L-serine 5'-RNA phosphodiester
has_synonym_type: Alternate name from RESID

L-citrulline
type: Class
subclass of: MOD_00902
definition: A protein modification that effectively converts an L-arginine residue to L-citrulline.
diff avg: 0.98
diff formula: C 0 H -1 N -1 O 1
diff mono: 0.984016
formula: C 6 H 11 N 3 O 2
mass avg: 157.17
mass mono: 157.08513
origin: R
source: natural
database_cross_reference: Unimod:7
database_cross_reference: uniprot.ptm:PTM-0092
has_exact_synonym: (S)-2-amino-5-(carbamoylamino)pentanoic acid
has_exact_synonym: 2-amino-5-(aminocarbonyl)aminopentanoic acid
has_exact_synonym: Cit
has_exact_synonym: Citrulline
has_exact_synonym: L-citrulline
has_exact_synonym: MOD_RES Citrulline
has_exact_synonym: N5-(aminocarbonyl)ornithine
has_exact_synonym: N5-carbamoylornithine
has_exact_synonym: N5-carbamylornithine
has_exact_synonym: alpha-amino-delta-ureidovaleric acid
has_exact_synonym: citrullinationr
has_exact_synonym: delta-ureidonorvaline
has_obo_namespace: PSI-MOD
has_related_synonym: Deamidated
has_related_synonym: Deamidation
id: MOD:00219
in_subset: PSI-MOD-slim
comment: This modification is not the result of deamidation, instead the guanidino group is replaced with an ureido group.

Axiom
annotated source: L-citrulline
annotated property: definition
annotated target: A protein modification that effectively converts an L-arginine residue to L-citrulline.
database_cross_reference: DeltaMass:0
database_cross_reference: OMSSA:33
database_cross_reference: PubMed:2466844
database_cross_reference: RESID:AA0214
database_cross_reference: Unimod:7#R

Axiom
annotated source: L-citrulline
annotated property: has_exact_synonym
annotated target: (S)-2-amino-5-(carbamoylamino)pentanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-citrulline
annotated property: has_exact_synonym
annotated target: 2-amino-5-(aminocarbonyl)aminopentanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-citrulline
annotated property: has_exact_synonym
annotated target: Cit
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-citrulline
annotated property: has_exact_synonym
annotated target: Citrulline
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: L-citrulline
annotated property: has_exact_synonym
annotated target: L-citrulline
has_synonym_type: Name from RESID

Axiom
annotated source: L-citrulline
annotated property: has_exact_synonym
annotated target: MOD_RES Citrulline
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-citrulline
annotated property: has_exact_synonym
annotated target: N5-(aminocarbonyl)ornithine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-citrulline
annotated property: has_exact_synonym
annotated target: N5-carbamoylornithine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-citrulline
annotated property: has_exact_synonym
annotated target: N5-carbamylornithine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-citrulline
annotated property: has_exact_synonym
annotated target: alpha-amino-delta-ureidovaleric acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-citrulline
annotated property: has_exact_synonym
annotated target: citrullinationr
has_synonym_type: Short label from OMSSA

Axiom
annotated source: L-citrulline
annotated property: has_exact_synonym
annotated target: delta-ureidonorvaline
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-citrulline
annotated property: has_related_synonym
annotated target: Deamidated
has_synonym_type: Agreed label from MS community

Axiom
annotated source: L-citrulline
annotated property: has_related_synonym
annotated target: Deamidated
has_synonym_type: Interim label from Unimod

Axiom
annotated source: L-citrulline
annotated property: has_related_synonym
annotated target: Deamidation
has_synonym_type: Description (full_name) from Unimod

4-hydroxy-L-arginine
type: Class
subclass of: monohydroxylated residue
subclass of: MOD_00682
definition: A protein modification that effectively converts an L-arginine residue to a 4-hydroxy-L-arginine.
diff avg: 16.0
diff formula: C 0 H 0 N 0 O 1
diff mono: 15.994915
formula: C 6 H 12 N 4 O 2
mass avg: 172.19
mass mono: 172.09602
origin: R
source: natural
database_cross_reference: uniprot.ptm:PTM-0042
has_exact_synonym: (2S,4Xi)-2-amino-5-[(diaminomethylidene)amino]-4-hydroxypentanoic acid
has_exact_synonym: 2-amino-5-(carbamimidamido)-4-hydroxypentanoic acid [tautomer]
has_exact_synonym: 2-amino-5-[(aminoiminomethyl)amino]-4-hydroxypentanoic acid [tautomer]
has_exact_synonym: 2-amino-5-guanidino-4-hydroxypentanoic acid
has_exact_synonym: 4-hydroxy-L-arginine
has_exact_synonym: 4-hydroxylated L-arginine
has_exact_synonym: 4HyArg
has_exact_synonym: C(gamma)-hydroxyarginine
has_exact_synonym: MOD_RES 4-hydroxyarginine
has_exact_synonym: gamma-hydroxyarginine
has_obo_namespace: PSI-MOD
id: MOD:00220

Axiom
annotated source: 4-hydroxy-L-arginine
annotated property: definition
annotated target: A protein modification that effectively converts an L-arginine residue to a 4-hydroxy-L-arginine.
database_cross_reference: PubMed:10966817
database_cross_reference: PubMed:7650037
database_cross_reference: RESID:AA0215

Axiom
annotated source: 4-hydroxy-L-arginine
annotated property: has_exact_synonym
annotated target: (2S,4Xi)-2-amino-5-[(diaminomethylidene)amino]-4-hydroxypentanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: 4-hydroxy-L-arginine
annotated property: has_exact_synonym
annotated target: 2-amino-5-(carbamimidamido)-4-hydroxypentanoic acid [tautomer]
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 4-hydroxy-L-arginine
annotated property: has_exact_synonym
annotated target: 2-amino-5-[(aminoiminomethyl)amino]-4-hydroxypentanoic acid [tautomer]
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 4-hydroxy-L-arginine
annotated property: has_exact_synonym
annotated target: 2-amino-5-guanidino-4-hydroxypentanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 4-hydroxy-L-arginine
annotated property: has_exact_synonym
annotated target: 4-hydroxy-L-arginine
has_synonym_type: Name from RESID

Axiom
annotated source: 4-hydroxy-L-arginine
annotated property: has_exact_synonym
annotated target: 4-hydroxylated L-arginine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: 4-hydroxy-L-arginine
annotated property: has_exact_synonym
annotated target: 4HyArg
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: 4-hydroxy-L-arginine
annotated property: has_exact_synonym
annotated target: C(gamma)-hydroxyarginine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 4-hydroxy-L-arginine
annotated property: has_exact_synonym
annotated target: MOD_RES 4-hydroxyarginine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: 4-hydroxy-L-arginine
annotated property: has_exact_synonym
annotated target: gamma-hydroxyarginine
has_synonym_type: Alternate name from RESID

N-(L-isoaspartyl)-L-cysteine
type: Class
subclass of: MOD_00688
subclass of: MOD_00946
subclass of: MOD_02042
subclass of: MOD_02044
definition: A protein modification that effectively crosslinks L-aspartic acid and L-cysteine residues via an isopeptide bond to form N-(L-isoaspartyl)-L-cysteine.
diff avg: -17.03
diff formula: C 0 H -3 N -1 O 0 S 0
diff mono: -17.026548
formula: C 7 H 9 N 2 O 3 S 1
mass avg: 201.22
mass mono: 201.03339
origin: C, N
source: natural
term spec: N-term
database_cross_reference: uniprot.ptm:PTM-0151
has_exact_synonym: (S)-2-amino-4-((R)-1-carboxy-2-sulfanylethyl)amino-4-oxobutanoic acid
has_exact_synonym: 2-(3-amino-3-carboxypropanoyl)amino-3-mercaptopropanoic acid
has_exact_synonym: 2-amino-N4-(1-carboxy-2-mercaptoethyl)butanediamic acid
has_exact_synonym: CROSSLNK Isoaspartyl cysteine isopeptide (Cys-Asn)
has_exact_synonym: N-(L-isoaspartyl)-L-cysteine
has_exact_synonym: N-beta-aspartylcysteine
has_exact_synonym: N-isoaspartyl cysteine
has_obo_namespace: PSI-MOD
id: MOD:00221
comment: Cross-link 2.

Axiom
annotated source: N-(L-isoaspartyl)-L-cysteine
annotated property: definition
annotated target: A protein modification that effectively crosslinks L-aspartic acid and L-cysteine residues via an isopeptide bond to form N-(L-isoaspartyl)-L-cysteine.
database_cross_reference: PubMed:8286361
database_cross_reference: RESID:AA0216

Axiom
annotated source: N-(L-isoaspartyl)-L-cysteine
annotated property: has_exact_synonym
annotated target: (S)-2-amino-4-((R)-1-carboxy-2-sulfanylethyl)amino-4-oxobutanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N-(L-isoaspartyl)-L-cysteine
annotated property: has_exact_synonym
annotated target: 2-(3-amino-3-carboxypropanoyl)amino-3-mercaptopropanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-(L-isoaspartyl)-L-cysteine
annotated property: has_exact_synonym
annotated target: 2-amino-N4-(1-carboxy-2-mercaptoethyl)butanediamic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-(L-isoaspartyl)-L-cysteine
annotated property: has_exact_synonym
annotated target: CROSSLNK Isoaspartyl cysteine isopeptide (Cys-Asn)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N-(L-isoaspartyl)-L-cysteine
annotated property: has_exact_synonym
annotated target: N-(L-isoaspartyl)-L-cysteine
has_synonym_type: Name from RESID

Axiom
annotated source: N-(L-isoaspartyl)-L-cysteine
annotated property: has_exact_synonym
annotated target: N-beta-aspartylcysteine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-(L-isoaspartyl)-L-cysteine
annotated property: has_exact_synonym
annotated target: N-isoaspartyl cysteine
has_synonym_type: Alternate name from RESID

2'-alpha-mannosyl-L-tryptophan
type: Class
subclass of: C-glycosylated residue
subclass of: monomannosylated residue
subclass of: MOD_00918
definition: A protein modification that effectively converts an L-tryptophan residue to 2'-alpha-mannosyl-L-tryptophan.
diff avg: 162.14
diff formula: C 6 H 10 N 0 O 5
diff mono: 162.05283
formula: C 17 H 20 N 2 O 6
mass avg: 348.36
mass mono: 348.13214
origin: W
source: natural
database_cross_reference: Unimod:41
database_cross_reference: uniprot.ptm:PTM-0505
has_exact_synonym: (2S)-2-amino-3-(2-beta-D-mannopyranosyl-1H-indol-3-yl)propanoic acid
has_exact_synonym: 2'-mannosyl-L-tryptophan
has_exact_synonym: 2'-tryptophan C-mannoside
has_exact_synonym: C2'ManTrp
has_exact_synonym: CARBOHYD C-linked (Man) tryptophan
has_obo_namespace: PSI-MOD
has_related_synonym: Hex
has_related_synonym: Hexose
id: MOD:00222

Axiom
annotated source: 2'-alpha-mannosyl-L-tryptophan
annotated property: definition
annotated target: A protein modification that effectively converts an L-tryptophan residue to 2'-alpha-mannosyl-L-tryptophan.
database_cross_reference: PubMed:15279557
database_cross_reference: PubMed:7547911
database_cross_reference: PubMed:7947762
database_cross_reference: RESID:AA0217
database_cross_reference: Unimod:41#W

Axiom
annotated source: 2'-alpha-mannosyl-L-tryptophan
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-3-(2-beta-D-mannopyranosyl-1H-indol-3-yl)propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: 2'-alpha-mannosyl-L-tryptophan
annotated property: has_exact_synonym
annotated target: 2'-mannosyl-L-tryptophan
has_synonym_type: Name from RESID

Axiom
annotated source: 2'-alpha-mannosyl-L-tryptophan
annotated property: has_exact_synonym
annotated target: 2'-tryptophan C-mannoside
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 2'-alpha-mannosyl-L-tryptophan
annotated property: has_exact_synonym
annotated target: C2'ManTrp
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: 2'-alpha-mannosyl-L-tryptophan
annotated property: has_exact_synonym
annotated target: CARBOHYD C-linked (Man) tryptophan
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: 2'-alpha-mannosyl-L-tryptophan
annotated property: has_related_synonym
annotated target: Hex
has_synonym_type: Agreed label from MS community

Axiom
annotated source: 2'-alpha-mannosyl-L-tryptophan
annotated property: has_related_synonym
annotated target: Hexose
has_synonym_type: Description (full_name) from Unimod

N6-mureinyl-L-lysine
type: Class
subclass of: MOD_01159
subclass of: MOD_01875
definition: A protein modification that effectively converts an L-lysine residue to N6-mureinyl-L-lysine.
origin: K
source: natural
database_cross_reference: uniprot.ptm:PTM-0195
has_exact_synonym: MOD_RES N6-murein peptidoglycan lysine
has_exact_synonym: N6-[(2R,6S)-2-(N-(N-mureinyl-(R)-alanyl)-(S)-glutamyl)amino-6-amino-6-carboxy-1-oxohex-1-yl]lysine
has_exact_synonym: N6-mureinyl-L-lysine
has_obo_namespace: PSI-MOD
id: MOD:00223

Axiom
annotated source: N6-mureinyl-L-lysine
annotated property: definition
annotated target: A protein modification that effectively converts an L-lysine residue to N6-mureinyl-L-lysine.
database_cross_reference: PubMed:4261992
database_cross_reference: RESID:AA0218

Axiom
annotated source: N6-mureinyl-L-lysine
annotated property: has_exact_synonym
annotated target: MOD_RES N6-murein peptidoglycan lysine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N6-mureinyl-L-lysine
annotated property: has_exact_synonym
annotated target: N6-[(2R,6S)-2-(N-(N-mureinyl-(R)-alanyl)-(S)-glutamyl)amino-6-amino-6-carboxy-1-oxohex-1-yl]lysine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N6-mureinyl-L-lysine
annotated property: has_exact_synonym
annotated target: N6-mureinyl-L-lysine
has_synonym_type: Name from RESID

1-chondroitin sulfate-L-aspartic acid ester
type: Class
subclass of: MOD_00904
definition: A protein modification that effectively converts an L-aspartic acid residue to 1-chondroitin sulfate-L-aspartic acid ester
origin: D
term spec: C-term
database_cross_reference: uniprot.ptm:PTM-0334
has_exact_synonym: 1-aspartic acid ester with 6-chondroitin 4-sulfate
has_exact_synonym: 1-chondroitin sulfate-L-aspartic acid ester
has_exact_synonym: MOD_RES Aspartate 1-(chondroitin 4-sulfate)-ester
has_exact_synonym: poly[beta-1,4-D-glucopyranuronosyl-beta-1,3-(2-acetamido-2-deoxy-4-sulfate D-galactosyl)]beta-1,4-D-glucopyranuronosyl-beta-1,3-(2-acetamido-2-deoxy-4-sulfate-6-(1-L-aspartyl)-D-galactose)
has_exact_synonym: protein-glycosaminoglycan-protein cross-link
has_obo_namespace: PSI-MOD
id: MOD:00224

Axiom
annotated source: 1-chondroitin sulfate-L-aspartic acid ester
annotated property: definition
annotated target: A protein modification that effectively converts an L-aspartic acid residue to 1-chondroitin sulfate-L-aspartic acid ester
database_cross_reference: PubMed:1898736
database_cross_reference: RESID:AA0219

Axiom
annotated source: 1-chondroitin sulfate-L-aspartic acid ester
annotated property: has_exact_synonym
annotated target: 1-aspartic acid ester with 6-chondroitin 4-sulfate
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 1-chondroitin sulfate-L-aspartic acid ester
annotated property: has_exact_synonym
annotated target: 1-chondroitin sulfate-L-aspartic acid ester
has_synonym_type: Name from RESID

Axiom
annotated source: 1-chondroitin sulfate-L-aspartic acid ester
annotated property: has_exact_synonym
annotated target: MOD_RES Aspartate 1-(chondroitin 4-sulfate)-ester
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: 1-chondroitin sulfate-L-aspartic acid ester
annotated property: has_exact_synonym
annotated target: poly[beta-1,4-D-glucopyranuronosyl-beta-1,3-(2-acetamido-2-deoxy-4-sulfate D-galactosyl)]beta-1,4-D-glucopyranuronosyl-beta-1,3-(2-acetamido-2-deoxy-4-sulfate-6-(1-L-aspartyl)-D-galactose)
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 1-chondroitin sulfate-L-aspartic acid ester
annotated property: has_exact_synonym
annotated target: protein-glycosaminoglycan-protein cross-link
has_synonym_type: Alternate name from RESID

S-(6-FMN)-L-cysteine
type: Class
subclass of: MOD_00905
subclass of: MOD_02084
definition: A protein modification that effectively converts an L-cysteine residue to S-(6-FMN)-L-cysteine.
diff avg: 454.33
diff formula: C 17 H 19 N 4 O 9 P 1 S 0
diff mono: 454.08896
formula: C 20 H 24 N 5 O 10 P 1 S 1
mass avg: 557.47
mass mono: 557.09814
origin: C
source: natural
database_cross_reference: Unimod:409
database_cross_reference: uniprot.ptm:PTM-0271
has_exact_synonym: (R)-2-amino-3-[6-riboflavin 5'-dihydrogen phosphate]sulfanylpropanoic acid
has_exact_synonym: 6-[S-cysteinyl]FMN
has_exact_synonym: 6-[S-cysteinyl]flavin mononucleotide
has_exact_synonym: MOD_RES S-6-FMN cysteine
has_exact_synonym: S-(6-FMN)-L-cysteine
has_exact_synonym: S6FMNCys
has_obo_namespace: PSI-MOD
has_related_synonym: FMNH
has_related_synonym: flavin mononucleotide
id: MOD:00225
in_subset: PSI-MOD-slim

Axiom
annotated source: S-(6-FMN)-L-cysteine
annotated property: definition
annotated target: A protein modification that effectively converts an L-cysteine residue to S-(6-FMN)-L-cysteine.
database_cross_reference: PubMed:10869173
database_cross_reference: PubMed:1551870
database_cross_reference: PubMed:620783
database_cross_reference: RESID:AA0220
database_cross_reference: Unimod:409#C

Axiom
annotated source: S-(6-FMN)-L-cysteine
annotated property: has_exact_synonym
annotated target: (R)-2-amino-3-[6-riboflavin 5'-dihydrogen phosphate]sulfanylpropanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: S-(6-FMN)-L-cysteine
annotated property: has_exact_synonym
annotated target: 6-[S-cysteinyl]FMN
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-(6-FMN)-L-cysteine
annotated property: has_exact_synonym
annotated target: 6-[S-cysteinyl]flavin mononucleotide
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-(6-FMN)-L-cysteine
annotated property: has_exact_synonym
annotated target: MOD_RES S-6-FMN cysteine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: S-(6-FMN)-L-cysteine
annotated property: has_exact_synonym
annotated target: S-(6-FMN)-L-cysteine
has_synonym_type: Name from RESID

Axiom
annotated source: S-(6-FMN)-L-cysteine
annotated property: has_exact_synonym
annotated target: S6FMNCys
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: S-(6-FMN)-L-cysteine
annotated property: has_related_synonym
annotated target: FMNH
has_synonym_type: Agreed label from MS community

Axiom
annotated source: S-(6-FMN)-L-cysteine
annotated property: has_related_synonym
annotated target: flavin mononucleotide
has_synonym_type: Description (full_name) from Unimod

1'-(8alpha-FAD)-L-histidine
type: Class
subclass of: MOD_00895
subclass of: MOD_00909
definition: A protein modification that effectively converts an L-histidine residue to 1'-(8alpha-FAD)-L-histidine.
diff avg: 783.54
diff formula: C 27 H 31 N 9 O 15 P 2
diff mono: 783.1415
formula: C 33 H 38 N 12 O 16 P 2
mass avg: 920.68
mass mono: 920.2004
origin: H
source: natural
database_cross_reference: Unimod:50
database_cross_reference: uniprot.ptm:PTM-0288
has_exact_synonym: (S)-2-amino-3-(1-[8alpha riboflavin 5'-(trihydrogen diphosphate) 5'->5'-ester with adenosine]imidazol-4-yl)propanoic acid
has_exact_synonym: 1'-(8alpha-FAD)-L-histidine
has_exact_synonym: 8alpha-(N(epsilon)-histidyl)FAD
has_exact_synonym: 8alpha-(N1'-histidyl)FAD
has_exact_synonym: MOD_RES Tele-8alpha-FAD histidine
has_exact_synonym: N theta and N pi-(8alpha-Flavin) (on Histidine)
has_exact_synonym: N(tau)-(8alpha-FAD)-histidine
has_exact_synonym: Nt8aFADHis
has_exact_synonym: tele-(8alpha-FAD)-histidine
has_obo_namespace: PSI-MOD
has_related_synonym: 8alpha-N3-histidyl FAD
has_related_synonym: FAD
has_related_synonym: Flavin adenine dinucleotide
id: MOD:00226
in_subset: PSI-MOD-slim
comment: From DeltaMass: Average Mass: 784

Axiom
annotated source: 1'-(8alpha-FAD)-L-histidine
annotated property: definition
annotated target: A protein modification that effectively converts an L-histidine residue to 1'-(8alpha-FAD)-L-histidine.
database_cross_reference: DeltaMass:0
database_cross_reference: PubMed:10585424
database_cross_reference: PubMed:1396672
database_cross_reference: PubMed:4339951
database_cross_reference: PubMed:9261083
database_cross_reference: RESID:AA0221
database_cross_reference: Unimod:50#H

Axiom
annotated source: 1'-(8alpha-FAD)-L-histidine
annotated property: has_exact_synonym
annotated target: (S)-2-amino-3-(1-[8alpha riboflavin 5'-(trihydrogen diphosphate) 5'->5'-ester with adenosine]imidazol-4-yl)propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: 1'-(8alpha-FAD)-L-histidine
annotated property: has_exact_synonym
annotated target: 1'-(8alpha-FAD)-L-histidine
has_synonym_type: Name from RESID

Axiom
annotated source: 1'-(8alpha-FAD)-L-histidine
annotated property: has_exact_synonym
annotated target: 8alpha-(N(epsilon)-histidyl)FAD
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 1'-(8alpha-FAD)-L-histidine
annotated property: has_exact_synonym
annotated target: 8alpha-(N1'-histidyl)FAD
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 1'-(8alpha-FAD)-L-histidine
annotated property: has_exact_synonym
annotated target: MOD_RES Tele-8alpha-FAD histidine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: 1'-(8alpha-FAD)-L-histidine
annotated property: has_exact_synonym
annotated target: N theta and N pi-(8alpha-Flavin) (on Histidine)
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: 1'-(8alpha-FAD)-L-histidine
annotated property: has_exact_synonym
annotated target: N(tau)-(8alpha-FAD)-histidine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 1'-(8alpha-FAD)-L-histidine
annotated property: has_exact_synonym
annotated target: Nt8aFADHis
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: 1'-(8alpha-FAD)-L-histidine
annotated property: has_exact_synonym
annotated target: tele-(8alpha-FAD)-histidine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 1'-(8alpha-FAD)-L-histidine
annotated property: has_related_synonym
annotated target: 8alpha-N3-histidyl FAD
has_synonym_type: Misnomer tagged alternate name from RESID

Axiom
annotated source: 1'-(8alpha-FAD)-L-histidine
annotated property: has_related_synonym
annotated target: FAD
has_synonym_type: Agreed label from MS community

Axiom
annotated source: 1'-(8alpha-FAD)-L-histidine
annotated property: has_related_synonym
annotated target: Flavin adenine dinucleotide
has_synonym_type: Description (full_name) from Unimod

omega-N-phospho-L-arginine
type: Class
subclass of: MOD_00902
subclass of: MOD_01456
definition: A protein modification that effectively converts an L-arginine residue to omega-N-phospho-L-arginine.
diff avg: 79.98
diff formula: C 0 H 1 N 0 O 3 P 1
diff mono: 79.96633
formula: C 6 H 13 N 4 O 4 P 1
mass avg: 236.17
mass mono: 236.06744
origin: R
source: natural
database_cross_reference: Unimod:21
database_cross_reference: uniprot.ptm:PTM-0250
has_exact_synonym: (2S)-2-amino-5-(N'-phosphonocarbamimidamido)pentanoic acid
has_exact_synonym: (2S)-2-amino-5-([amino(phosphonoamino)methylidene]amino)pentanoic acid
has_exact_synonym: MOD_RES Phosphoarginine
has_exact_synonym: N(gamma)-phosphoarginine
has_exact_synonym: N(omega)-phosphono-L-arginine
has_exact_synonym: N5-[imino(phosphonoamino)methyl]-L-ornithine
has_exact_synonym: PArg
has_exact_synonym: alpha-amino-delta-phosphonoguanidinovaleric acid
has_exact_synonym: omega-N-phospho-L-arginine
has_exact_synonym: phosphoarginine
has_obo_namespace: PSI-MOD
has_related_synonym: Phospho
has_related_synonym: Phosphorylation
id: MOD:00227
in_subset: PSI-MOD-slim

Axiom
annotated source: omega-N-phospho-L-arginine
annotated property: definition
annotated target: A protein modification that effectively converts an L-arginine residue to omega-N-phospho-L-arginine.
database_cross_reference: PubMed:8300603
database_cross_reference: RESID:AA0222
database_cross_reference: Unimod:21#R

Axiom
annotated source: omega-N-phospho-L-arginine
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-5-(N'-phosphonocarbamimidamido)pentanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: omega-N-phospho-L-arginine
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-5-([amino(phosphonoamino)methylidene]amino)pentanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: omega-N-phospho-L-arginine
annotated property: has_exact_synonym
annotated target: MOD_RES Phosphoarginine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: omega-N-phospho-L-arginine
annotated property: has_exact_synonym
annotated target: N(gamma)-phosphoarginine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: omega-N-phospho-L-arginine
annotated property: has_exact_synonym
annotated target: N(omega)-phosphono-L-arginine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: omega-N-phospho-L-arginine
annotated property: has_exact_synonym
annotated target: N5-[imino(phosphonoamino)methyl]-L-ornithine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: omega-N-phospho-L-arginine
annotated property: has_exact_synonym
annotated target: PArg
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: omega-N-phospho-L-arginine
annotated property: has_exact_synonym
annotated target: alpha-amino-delta-phosphonoguanidinovaleric acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: omega-N-phospho-L-arginine
annotated property: has_exact_synonym
annotated target: omega-N-phospho-L-arginine
has_synonym_type: Name from RESID

Axiom
annotated source: omega-N-phospho-L-arginine
annotated property: has_exact_synonym
annotated target: phosphoarginine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: omega-N-phospho-L-arginine
annotated property: has_related_synonym
annotated target: Phospho
has_synonym_type: Agreed label from MS community

Axiom
annotated source: omega-N-phospho-L-arginine
annotated property: has_related_synonym
annotated target: Phosphorylation
has_synonym_type: Description (full_name) from Unimod

S-diphytanylglycerol diether-L-cysteine
type: Class
subclass of: MOD_00905
subclass of: MOD_01155
definition: A protein modification that effectively converts an L-cysteine residue to S-diphytanylglycerol diether-L-cysteine.
diff avg: 635.16
diff formula: C 43 H 86 N 0 O 2 S 0
diff mono: 634.6628
formula: C 46 H 91 N 1 O 3 S 1
mass avg: 738.3
mass mono: 737.672
origin: C
source: natural
database_cross_reference: Unimod:410
database_cross_reference: uniprot.ptm:PTM-0273
has_exact_synonym: (2R)-2-amino-3-([(2S)-2,3-bis(3,7,11,15-tetramethylhexadecanyloxy)propyl]sulfanyl)propanoic acid
has_exact_synonym: LIPID S-archaeol cysteine
has_exact_synonym: S-(diphytanylglyceryl)-L-cysteine
has_exact_synonym: S-[2',3'-bis(phytanyloxy)propyl]cysteine
has_exact_synonym: S-archaeol cysteine
has_exact_synonym: SPhyt2GlyceroCys
has_obo_namespace: PSI-MOD
has_related_synonym: Archaeol
has_related_synonym: S-diphytanylglycerol diether
id: MOD:00228
in_subset: PSI-MOD-slim
comment: incidental to RESID:AA0043.

Axiom
annotated source: S-diphytanylglycerol diether-L-cysteine
annotated property: definition
annotated target: A protein modification that effectively converts an L-cysteine residue to S-diphytanylglycerol diether-L-cysteine.
database_cross_reference: PubMed:7797461
database_cross_reference: PubMed:8195126
database_cross_reference: RESID:AA0223
database_cross_reference: Unimod:410

Axiom
annotated source: S-diphytanylglycerol diether-L-cysteine
annotated property: has_exact_synonym
annotated target: (2R)-2-amino-3-([(2S)-2,3-bis(3,7,11,15-tetramethylhexadecanyloxy)propyl]sulfanyl)propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: S-diphytanylglycerol diether-L-cysteine
annotated property: has_exact_synonym
annotated target: LIPID S-archaeol cysteine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: S-diphytanylglycerol diether-L-cysteine
annotated property: has_exact_synonym
annotated target: S-(diphytanylglyceryl)-L-cysteine
has_synonym_type: Name from RESID

Axiom
annotated source: S-diphytanylglycerol diether-L-cysteine
annotated property: has_exact_synonym
annotated target: S-[2',3'-bis(phytanyloxy)propyl]cysteine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-diphytanylglycerol diether-L-cysteine
annotated property: has_exact_synonym
annotated target: S-archaeol cysteine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-diphytanylglycerol diether-L-cysteine
annotated property: has_exact_synonym
annotated target: SPhyt2GlyceroCys
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: S-diphytanylglycerol diether-L-cysteine
annotated property: has_related_synonym
annotated target: Archaeol
has_synonym_type: Agreed label from MS community

Axiom
annotated source: S-diphytanylglycerol diether-L-cysteine
annotated property: has_related_synonym
annotated target: S-diphytanylglycerol diether
has_synonym_type: Description (full_name) from Unimod

alpha-1-microglobulin-Ig alpha complex chromophore
type: Class
subclass of: MOD_02044
definition: A protein modification that effectively converts two L-cysteine residues to form alpha-1-microglobulin-Ig alpha complex chromophore.
diff avg: -2.02
diff formula: C 0 H -2 N 0 O 0 S 0
diff mono: -2.01565
formula: C 6 H 8 N 2 O 2 S 2
mass avg: 204.26
mass mono: 204.00272
origin: C, C
source: natural
has_exact_synonym: BINDING Multimeric 3-hydroxykynurenine chromophore (covalent)
has_exact_synonym: alpha-1-microglobulin-Ig alpha complex chromophore
has_obo_namespace: PSI-MOD
id: MOD:00229
comment: Cross-link 2.

Axiom
annotated source: alpha-1-microglobulin-Ig alpha complex chromophore
annotated property: definition
annotated target: A protein modification that effectively converts two L-cysteine residues to form alpha-1-microglobulin-Ig alpha complex chromophore.
database_cross_reference: PubMed:11058759
database_cross_reference: PubMed:11877257
database_cross_reference: PubMed:7506257
database_cross_reference: PubMed:7535251
database_cross_reference: RESID:AA0224

Axiom
annotated source: alpha-1-microglobulin-Ig alpha complex chromophore
annotated property: has_exact_synonym
annotated target: BINDING Multimeric 3-hydroxykynurenine chromophore (covalent)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: alpha-1-microglobulin-Ig alpha complex chromophore
annotated property: has_exact_synonym
annotated target: alpha-1-microglobulin-Ig alpha complex chromophore
has_synonym_type: Name from RESID

bis-L-cysteinyl bis-L-histidino diiron disulfide
type: Class
subclass of: MOD_00739
subclass of: MOD_02067
subclass of: MOD_02070
definition: A protein modification that effectively converts two L-cysteine residues, two L-histidine residues and a two-iron two-sulfur cluster to bis-L-cysteinyl bis-L-histidino diiron disulfide.
diff avg: 171.78
diff formula: C 0 Fe 2 H -4 N 0 O 0 S 2
diff mono: 171.78381
formal charge: 2-
formula: C 18 Fe 2 H 20 N 8 O 4 S 4
mass avg: 652.34
mass mono: 651.92
origin: C, C, H, H
source: natural
has_exact_synonym: METAL Iron-sulfur (2Fe-2S)
has_exact_synonym: METAL Iron-sulfur (2Fe-2S); via pros nitrogen
has_exact_synonym: Rieske iron-sulfur cofactor
has_exact_synonym: bis-L-cysteinyl bis-L-histidino diiron disulfide
has_exact_synonym: di-mu-sulfido(bis-S-cysteinyliron)(bis-N3'-histidinoiron)
has_obo_namespace: PSI-MOD
id: MOD:00230
comment: Cross-link 4.

Axiom
annotated source: bis-L-cysteinyl bis-L-histidino diiron disulfide
annotated property: definition
annotated target: A protein modification that effectively converts two L-cysteine residues, two L-histidine residues and a two-iron two-sulfur cluster to bis-L-cysteinyl bis-L-histidino diiron disulfide.
database_cross_reference: PubMed:2765515
database_cross_reference: PubMed:9651245
database_cross_reference: RESID:AA0225

Axiom
annotated source: bis-L-cysteinyl bis-L-histidino diiron disulfide
annotated property: has_exact_synonym
annotated target: METAL Iron-sulfur (2Fe-2S)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: bis-L-cysteinyl bis-L-histidino diiron disulfide
annotated property: has_exact_synonym
annotated target: METAL Iron-sulfur (2Fe-2S); via pros nitrogen
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: bis-L-cysteinyl bis-L-histidino diiron disulfide
annotated property: has_exact_synonym
annotated target: Rieske iron-sulfur cofactor
has_synonym_type: Alternate name from RESID

Axiom
annotated source: bis-L-cysteinyl bis-L-histidino diiron disulfide
annotated property: has_exact_synonym
annotated target: bis-L-cysteinyl bis-L-histidino diiron disulfide
has_synonym_type: Name from RESID

Axiom
annotated source: bis-L-cysteinyl bis-L-histidino diiron disulfide
annotated property: has_exact_synonym
annotated target: di-mu-sulfido(bis-S-cysteinyliron)(bis-N3'-histidinoiron)
has_synonym_type: Systematic name from RESID

hexakis-L-cysteinyl hexairon hexasulfide
type: Class
subclass of: MOD_00739
subclass of: MOD_02067
definition: A protein modification that effectively converts six L-cysteine residues and a six-iron six-sulfur cluster to hexakis-L-cysteinyl hexairon hexasulfide.
diff avg: 521.38
diff formula: C 0 Fe 6 H -6 N 0 O 0 S 6
diff mono: 521.3956
formal charge: 1-
formula: C 18 Fe 6 H 24 N 6 O 6 S 12
mass avg: 1140.22
mass mono: 1139.4508
origin: C, C, C, C, C, C
source: hypothetical
has_exact_synonym: hexa-mu3-sulfido-hexakis(S-cysteinyliron)
has_exact_synonym: hexa-mu3-sulfido-hexakis(cysteinato-kappaS)-hexairon
has_exact_synonym: hexakis-L-cysteinyl hexairon hexasulfide
has_exact_synonym: prismane iron-sulfur cofactor
has_obo_namespace: PSI-MOD
id: MOD:00231
comment: Cross-link 6. This is a deprecated entry in RESID. It probably does not occur naturally [JSG].

Axiom
annotated source: hexakis-L-cysteinyl hexairon hexasulfide
annotated property: definition
annotated target: A protein modification that effectively converts six L-cysteine residues and a six-iron six-sulfur cluster to hexakis-L-cysteinyl hexairon hexasulfide.
database_cross_reference: PubMed:1311311
database_cross_reference: PubMed:1318833
database_cross_reference: RESID:AA0226

Axiom
annotated source: hexakis-L-cysteinyl hexairon hexasulfide
annotated property: has_exact_synonym
annotated target: hexa-mu3-sulfido-hexakis(S-cysteinyliron)
has_synonym_type: Alternate name from RESID

Axiom
annotated source: hexakis-L-cysteinyl hexairon hexasulfide
annotated property: has_exact_synonym
annotated target: hexa-mu3-sulfido-hexakis(cysteinato-kappaS)-hexairon
has_synonym_type: Systematic name from RESID

Axiom
annotated source: hexakis-L-cysteinyl hexairon hexasulfide
annotated property: has_exact_synonym
annotated target: hexakis-L-cysteinyl hexairon hexasulfide
has_synonym_type: Name from RESID

Axiom
annotated source: hexakis-L-cysteinyl hexairon hexasulfide
annotated property: has_exact_synonym
annotated target: prismane iron-sulfur cofactor
has_synonym_type: Alternate name from RESID

N6-(phospho-5'-adenosine)-L-lysine
type: Class
subclass of: MOD_00912
subclass of: MOD_01165
definition: A protein modification that effectively crosslinks an L-lysine residue and 5'-phosphoadenosine through a phosphoramide ester bond to form N6-(phospho-5'-adenosine)-L-lysine.
diff avg: 329.21
diff formula: C 10 H 12 N 5 O 6 P 1
diff mono: 329.05252
formula: C 16 H 24 N 7 O 7 P 1
mass avg: 457.38
mass mono: 457.1475
origin: K
source: natural
database_cross_reference: Unimod:405
has_exact_synonym: (2S)-2-amino-6-(5'-adenosine phosphonamino)hexanoic acid
has_exact_synonym: 5'-adenylic-N6-L-lysine
has_exact_synonym: ACT_SITE N6-AMP-lysine intermediate
has_exact_synonym: AMP Lysyl
has_exact_synonym: L-lysine monoanhydride with 5'-adenylic acid
has_exact_synonym: N(zeta)-5'-adenylic-L-lysine
has_exact_synonym: N6-(phospho-5'-adenosine)-L-lysine
has_exact_synonym: N6-L-lysine 5'-adenosine phosphoramidester
has_exact_synonym: N6AMPLys
has_exact_synonym: epsilon-5'-adenylic-L-lysine
has_obo_namespace: PSI-MOD
has_related_synonym: AMP binding site
has_related_synonym: Phosphoadenosine
id: MOD:00232
in_subset: PSI-MOD-slim

Axiom
annotated source: N6-(phospho-5'-adenosine)-L-lysine
annotated property: definition
annotated target: A protein modification that effectively crosslinks an L-lysine residue and 5'-phosphoadenosine through a phosphoramide ester bond to form N6-(phospho-5'-adenosine)-L-lysine.
database_cross_reference: DeltaMass:316
database_cross_reference: PubMed:3882425
database_cross_reference: PubMed:4944632
database_cross_reference: RESID:AA0227
database_cross_reference: Unimod:405#K

Axiom
annotated source: N6-(phospho-5'-adenosine)-L-lysine
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-6-(5'-adenosine phosphonamino)hexanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N6-(phospho-5'-adenosine)-L-lysine
annotated property: has_exact_synonym
annotated target: 5'-adenylic-N6-L-lysine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N6-(phospho-5'-adenosine)-L-lysine
annotated property: has_exact_synonym
annotated target: ACT_SITE N6-AMP-lysine intermediate
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N6-(phospho-5'-adenosine)-L-lysine
annotated property: has_exact_synonym
annotated target: AMP Lysyl
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: N6-(phospho-5'-adenosine)-L-lysine
annotated property: has_exact_synonym
annotated target: L-lysine monoanhydride with 5'-adenylic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N6-(phospho-5'-adenosine)-L-lysine
annotated property: has_exact_synonym
annotated target: N(zeta)-5'-adenylic-L-lysine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N6-(phospho-5'-adenosine)-L-lysine
annotated property: has_exact_synonym
annotated target: N6-(phospho-5'-adenosine)-L-lysine
has_synonym_type: Name from RESID

Axiom
annotated source: N6-(phospho-5'-adenosine)-L-lysine
annotated property: has_exact_synonym
annotated target: N6-L-lysine 5'-adenosine phosphoramidester
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N6-(phospho-5'-adenosine)-L-lysine
annotated property: has_exact_synonym
annotated target: N6AMPLys
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: N6-(phospho-5'-adenosine)-L-lysine
annotated property: has_exact_synonym
annotated target: epsilon-5'-adenylic-L-lysine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N6-(phospho-5'-adenosine)-L-lysine
annotated property: has_related_synonym
annotated target: AMP binding site
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: N6-(phospho-5'-adenosine)-L-lysine
annotated property: has_related_synonym
annotated target: Phosphoadenosine
has_synonym_type: Agreed label from MS community

N6-(phospho-5'-guanosine)-L-lysine
type: Class
subclass of: MOD_00912
subclass of: MOD_01163
definition: A protein modification that effectively crosslinks an L-lysine residue and 5'-phosphoguanosine through a phosphoramide ester bond to form N6-(phospho-5'-guanosine)-L-lysine.
diff avg: 345.21
diff formula: C 10 H 12 N 5 O 7 P 1
diff mono: 345.04742
formula: C 16 H 24 N 7 O 8 P 1
mass avg: 473.38
mass mono: 473.1424
origin: K
source: natural
database_cross_reference: Unimod:413
has_exact_synonym: (2S)-2-amino-6-(5'-guanosine phosphonamino)hexanoic acid
has_exact_synonym: 5'-guanylic-N6-L-lysine
has_exact_synonym: 5'phos Guanosyl
has_exact_synonym: ACT_SITE N6-GMP-lysine intermediate
has_exact_synonym: L-lysine monoanhydride with 5'-guanylic acid
has_exact_synonym: N(zeta)-5'-guanylic-lysine
has_exact_synonym: N6-(5'-guanylyl)-lysine
has_exact_synonym: N6-(phospho-5'-guanosine)-L-lysine
has_exact_synonym: N6-L-lysine 5'-guanosine phosphoramidester
has_exact_synonym: N6GMPLys
has_exact_synonym: epsilon-5'-guanylic-L-lysine
has_exact_synonym: lysine guanosine-5'-monophosphate
has_obo_namespace: PSI-MOD
has_related_synonym: Phosphoguanosine
has_related_synonym: phospho-guanosine
id: MOD:00233
in_subset: PSI-MOD-slim
comment: From DeltaMass: Average Mass: 345 Formula:C10H12O5N7P1 Monoisotopic Mass Change:345.047 Average Mass Change:345.209 References:PE Sciex

Axiom
annotated source: N6-(phospho-5'-guanosine)-L-lysine
annotated property: definition
annotated target: A protein modification that effectively crosslinks an L-lysine residue and 5'-phosphoguanosine through a phosphoramide ester bond to form N6-(phospho-5'-guanosine)-L-lysine.
database_cross_reference: DeltaMass:304
database_cross_reference: PubMed:6092377
database_cross_reference: PubMed:6264433
database_cross_reference: RESID:AA0228
database_cross_reference: Unimod:413#K

Axiom
annotated source: N6-(phospho-5'-guanosine)-L-lysine
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-6-(5'-guanosine phosphonamino)hexanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N6-(phospho-5'-guanosine)-L-lysine
annotated property: has_exact_synonym
annotated target: 5'-guanylic-N6-L-lysine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N6-(phospho-5'-guanosine)-L-lysine
annotated property: has_exact_synonym
annotated target: 5'phos Guanosyl
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: N6-(phospho-5'-guanosine)-L-lysine
annotated property: has_exact_synonym
annotated target: ACT_SITE N6-GMP-lysine intermediate
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N6-(phospho-5'-guanosine)-L-lysine
annotated property: has_exact_synonym
annotated target: L-lysine monoanhydride with 5'-guanylic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N6-(phospho-5'-guanosine)-L-lysine
annotated property: has_exact_synonym
annotated target: N(zeta)-5'-guanylic-lysine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N6-(phospho-5'-guanosine)-L-lysine
annotated property: has_exact_synonym
annotated target: N6-(5'-guanylyl)-lysine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N6-(phospho-5'-guanosine)-L-lysine
annotated property: has_exact_synonym
annotated target: N6-(phospho-5'-guanosine)-L-lysine
has_synonym_type: Name from RESID

Axiom
annotated source: N6-(phospho-5'-guanosine)-L-lysine
annotated property: has_exact_synonym
annotated target: N6-L-lysine 5'-guanosine phosphoramidester
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N6-(phospho-5'-guanosine)-L-lysine
annotated property: has_exact_synonym
annotated target: N6GMPLys
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: N6-(phospho-5'-guanosine)-L-lysine
annotated property: has_exact_synonym
annotated target: epsilon-5'-guanylic-L-lysine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N6-(phospho-5'-guanosine)-L-lysine
annotated property: has_exact_synonym
annotated target: lysine guanosine-5'-monophosphate
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N6-(phospho-5'-guanosine)-L-lysine
annotated property: has_related_synonym
annotated target: Phosphoguanosine
has_synonym_type: Agreed label from MS community

Axiom
annotated source: N6-(phospho-5'-guanosine)-L-lysine
annotated property: has_related_synonym
annotated target: phospho-guanosine
has_synonym_type: Description (full_name) from Unimod

L-cysteine glutathione disulfide
type: Class
subclass of: MOD_00905
subclass of: MOD_01862
subclass of: Restriction
  on property: contains
  some values from: MOD_02026
definition: A protein modification that effectively converts an L-cysteine residue to S-glutathionyl-L-cysteine.
diff avg: 305.3
diff formula: C 10 H 15 N 3 O 6 S 1
diff mono: 305.06815
formula: C 13 H 20 N 4 O 7 S 2
mass avg: 408.44
mass mono: 408.07733
origin: C
source: natural
database_cross_reference: Unimod:55
database_cross_reference: uniprot.ptm:PTM-0311
has_exact_synonym: (2S)-2-amino-3-((2S)-2-((4R)-4-amino-4-carboxyl-1-oxobutyl)amino-3-(carboxylmethyl)amino-3-oxo-propyl)dithio-propanoic acid
has_exact_synonym: Glutathionation
has_exact_synonym: L-cysteine glutathione disulfide
has_exact_synonym: L-gamma-glutamyl-L-cysteinyl-glycine (2-1')-disulfide with L-cysteine
has_exact_synonym: MOD_RES S-glutathionyl cysteine
has_exact_synonym: N-(N-gamma-glutamyl-cystinyl)-glycine
has_exact_synonym: SGltCys
has_exact_synonym: cysteinyl glutathione
has_exact_synonym: glutathionec
has_obo_namespace: PSI-MOD
has_related_synonym: Glutathione
has_related_synonym: glutathione disulfide
id: MOD:00234
in_subset: PSI-MOD-slim
comment: Glutamyl-transpeptidase cleaves glutathione into cysteinylglycine (Cys-Gly) and a Glu residue. [PubMed: 28537416]

Axiom
annotated source: L-cysteine glutathione disulfide
annotated property: definition
annotated target: A protein modification that effectively converts an L-cysteine residue to S-glutathionyl-L-cysteine.
database_cross_reference: ChEBI:21264
database_cross_reference: DeltaMass:0
database_cross_reference: OMSSA:51
database_cross_reference: PubMed:3083866
database_cross_reference: PubMed:8344916
database_cross_reference: RESID:AA0229
database_cross_reference: Unimod:55

Axiom
annotated source: L-cysteine glutathione disulfide
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-3-((2S)-2-((4R)-4-amino-4-carboxyl-1-oxobutyl)amino-3-(carboxylmethyl)amino-3-oxo-propyl)dithio-propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-cysteine glutathione disulfide
annotated property: has_exact_synonym
annotated target: Glutathionation
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: L-cysteine glutathione disulfide
annotated property: has_exact_synonym
annotated target: L-cysteine glutathione disulfide
has_synonym_type: Name from RESID

Axiom
annotated source: L-cysteine glutathione disulfide
annotated property: has_exact_synonym
annotated target: L-gamma-glutamyl-L-cysteinyl-glycine (2-1')-disulfide with L-cysteine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteine glutathione disulfide
annotated property: has_exact_synonym
annotated target: MOD_RES S-glutathionyl cysteine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-cysteine glutathione disulfide
annotated property: has_exact_synonym
annotated target: N-(N-gamma-glutamyl-cystinyl)-glycine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteine glutathione disulfide
annotated property: has_exact_synonym
annotated target: SGltCys
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-cysteine glutathione disulfide
annotated property: has_exact_synonym
annotated target: cysteinyl glutathione
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteine glutathione disulfide
annotated property: has_exact_synonym
annotated target: glutathionec
has_synonym_type: Short label from OMSSA

Axiom
annotated source: L-cysteine glutathione disulfide
annotated property: has_related_synonym
annotated target: Glutathione
has_synonym_type: Agreed label from MS community

Axiom
annotated source: L-cysteine glutathione disulfide
annotated property: has_related_synonym
annotated target: glutathione disulfide
has_synonym_type: Description (full_name) from Unimod

S-nitrosyl-L-cysteine
type: Class
subclass of: MOD_00905
subclass of: MOD_02077
definition: A protein modification that effectively converts an L-cysteine residue to S-nitrosyl-L-cysteine.
diff avg: 29.0
diff formula: C 0 H -1 N 1 O 1 S 0
diff mono: 28.990164
formula: C 3 H 4 N 2 O 2 S 1
mass avg: 132.14
mass mono: 131.99934
origin: C
source: natural
database_cross_reference: Unimod:275
database_cross_reference: uniprot.ptm:PTM-0280
has_exact_synonym: (2R)-2-amino-3-nitrososulfanyl-propanoic acid
has_exact_synonym: L-cysteine nitrite ester
has_exact_synonym: MOD_RES S-nitrosocysteine
has_exact_synonym: S-nitrosocysteine
has_exact_synonym: S-nitrosyl-L-cysteine
has_exact_synonym: SNOCys
has_obo_namespace: PSI-MOD
has_related_synonym: Nitrosyl
has_related_synonym: S-nitrosylation
id: MOD:00235
in_subset: PSI-MOD-slim

Axiom
annotated source: S-nitrosyl-L-cysteine
annotated property: definition
annotated target: A protein modification that effectively converts an L-cysteine residue to S-nitrosyl-L-cysteine.
database_cross_reference: PubMed:10442087
database_cross_reference: PubMed:11562475
database_cross_reference: PubMed:15688001
database_cross_reference: PubMed:8626764
database_cross_reference: PubMed:8637569
database_cross_reference: RESID:AA0230
database_cross_reference: Unimod:275

Axiom
annotated source: S-nitrosyl-L-cysteine
annotated property: has_exact_synonym
annotated target: (2R)-2-amino-3-nitrososulfanyl-propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: S-nitrosyl-L-cysteine
annotated property: has_exact_synonym
annotated target: L-cysteine nitrite ester
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-nitrosyl-L-cysteine
annotated property: has_exact_synonym
annotated target: MOD_RES S-nitrosocysteine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: S-nitrosyl-L-cysteine
annotated property: has_exact_synonym
annotated target: S-nitrosocysteine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-nitrosyl-L-cysteine
annotated property: has_exact_synonym
annotated target: S-nitrosyl-L-cysteine
has_synonym_type: Name from RESID

Axiom
annotated source: S-nitrosyl-L-cysteine
annotated property: has_exact_synonym
annotated target: SNOCys
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: S-nitrosyl-L-cysteine
annotated property: has_related_synonym
annotated target: Nitrosyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: S-nitrosyl-L-cysteine
annotated property: has_related_synonym
annotated target: S-nitrosylation
has_synonym_type: Description (full_name) from Unimod

N4-(ADP-ribosyl)-L-asparagine
type: Class
subclass of: MOD_00752
subclass of: MOD_00903
definition: A protein modification that effectively converts an L-asparagine residue to N4-(ADP-ribosyl)-L-asparagine.
diff avg: 541.3
diff formula: C 15 H 21 N 5 O 13 P 2
diff mono: 541.0611
formula: C 19 H 27 N 7 O 15 P 2
mass avg: 655.41
mass mono: 655.10406
origin: N
source: natural
database_cross_reference: Unimod:213
database_cross_reference: uniprot.ptm:PTM-0054
has_exact_synonym: (S)-2-amino-4-([adenosine 5'-(trihydrogen diphosphate) 5'->5'-ester with alpha-D-ribofuranosyl]amino)-4-oxobutanoic acid
has_exact_synonym: MOD_RES ADP-ribosylasparagine
has_exact_synonym: N4-(ADP-ribosyl)-L-asparagine
has_exact_synonym: N4-[alpha-D-ribofuranoside 5'->5'-ester with adenosine 5'-(trihydrogen diphosphate)]-L-asparagine
has_exact_synonym: N4-alpha-D-ribofuranosyl-L-asparagine 5'->5'-ester with adenosine 5'-(trihydrogen diphosphate)
has_obo_namespace: PSI-MOD
has_related_synonym: ADP Ribose addition
has_related_synonym: ADP-Ribosyl
id: MOD:00236

Axiom
annotated source: N4-(ADP-ribosyl)-L-asparagine
annotated property: definition
annotated target: A protein modification that effectively converts an L-asparagine residue to N4-(ADP-ribosyl)-L-asparagine.
database_cross_reference: PubMed:15842200
database_cross_reference: PubMed:2498316
database_cross_reference: RESID:AA0231
database_cross_reference: Unimod:213#N

Axiom
annotated source: N4-(ADP-ribosyl)-L-asparagine
annotated property: has_exact_synonym
annotated target: (S)-2-amino-4-([adenosine 5'-(trihydrogen diphosphate) 5'->5'-ester with alpha-D-ribofuranosyl]amino)-4-oxobutanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N4-(ADP-ribosyl)-L-asparagine
annotated property: has_exact_synonym
annotated target: MOD_RES ADP-ribosylasparagine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N4-(ADP-ribosyl)-L-asparagine
annotated property: has_exact_synonym
annotated target: N4-(ADP-ribosyl)-L-asparagine
has_synonym_type: Name from RESID

Axiom
annotated source: N4-(ADP-ribosyl)-L-asparagine
annotated property: has_exact_synonym
annotated target: N4-[alpha-D-ribofuranoside 5'->5'-ester with adenosine 5'-(trihydrogen diphosphate)]-L-asparagine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N4-(ADP-ribosyl)-L-asparagine
annotated property: has_exact_synonym
annotated target: N4-alpha-D-ribofuranosyl-L-asparagine 5'->5'-ester with adenosine 5'-(trihydrogen diphosphate)
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N4-(ADP-ribosyl)-L-asparagine
annotated property: has_related_synonym
annotated target: ADP Ribose addition
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: N4-(ADP-ribosyl)-L-asparagine
annotated property: has_related_synonym
annotated target: ADP-Ribosyl
has_synonym_type: Agreed label from MS community

L-beta-methylthioaspartic acid
type: Class
subclass of: MOD_00904
subclass of: MOD_01153
definition: A protein modification that effectively converts an L-aspartic acid residue to L-beta-methylthioaspartic acid.
diff avg: 46.09
diff formula: C 1 H 2 N 0 O 0 S 1
diff mono: 45.98772
formula: C 5 H 7 N 1 O 3 S 1
mass avg: 161.18
mass mono: 161.01466
origin: D
source: natural
database_cross_reference: Unimod:39
database_cross_reference: uniprot.ptm:PTM-0032
has_exact_synonym: (2R,3Xi)-2-amino-3-(methylsulfanyl)butanedioic acid
has_exact_synonym: 3-(methylthio)-L-aspartic acid
has_exact_synonym: 3-carboxy-S-methyl-cysteine
has_exact_synonym: 3-methylthio-aspartic acid
has_exact_synonym: 3MeSAsp
has_exact_synonym: MOD_RES 3-methylthioaspartic acid
has_exact_synonym: beta-Methylthio-aspartic acid
has_exact_synonym: beta-methylthio-aspartic acid
has_exact_synonym: bmethylthiold
has_exact_synonym: methythiold
has_obo_namespace: PSI-MOD
has_related_synonym: Beta-methylthiolation
has_related_synonym: Methylthio
id: MOD:00237
in_subset: PSI-MOD-slim

Axiom
annotated source: L-beta-methylthioaspartic acid
annotated property: definition
annotated target: A protein modification that effectively converts an L-aspartic acid residue to L-beta-methylthioaspartic acid.
database_cross_reference: ChEBI:73599
database_cross_reference: DeltaMass:61
database_cross_reference: OMSSA:13
database_cross_reference: OMSSA:26
database_cross_reference: PubMed:15473684
database_cross_reference: PubMed:8844851
database_cross_reference: RESID:AA0232
database_cross_reference: Unimod:39#D

Axiom
annotated source: L-beta-methylthioaspartic acid
annotated property: has_exact_synonym
annotated target: (2R,3Xi)-2-amino-3-(methylsulfanyl)butanedioic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-beta-methylthioaspartic acid
annotated property: has_exact_synonym
annotated target: 3-(methylthio)-L-aspartic acid
has_synonym_type: Name from RESID

Axiom
annotated source: L-beta-methylthioaspartic acid
annotated property: has_exact_synonym
annotated target: 3-carboxy-S-methyl-cysteine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-beta-methylthioaspartic acid
annotated property: has_exact_synonym
annotated target: 3-methylthio-aspartic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-beta-methylthioaspartic acid
annotated property: has_exact_synonym
annotated target: 3MeSAsp
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-beta-methylthioaspartic acid
annotated property: has_exact_synonym
annotated target: MOD_RES 3-methylthioaspartic acid
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-beta-methylthioaspartic acid
annotated property: has_exact_synonym
annotated target: beta-Methylthio-aspartic acid
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: L-beta-methylthioaspartic acid
annotated property: has_exact_synonym
annotated target: beta-methylthio-aspartic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-beta-methylthioaspartic acid
annotated property: has_exact_synonym
annotated target: bmethylthiold
has_synonym_type: Short label from OMSSA

Axiom
annotated source: L-beta-methylthioaspartic acid
annotated property: has_exact_synonym
annotated target: methythiold
has_synonym_type: Short label from OMSSA

Axiom
annotated source: L-beta-methylthioaspartic acid
annotated property: has_related_synonym
annotated target: Beta-methylthiolation
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: L-beta-methylthioaspartic acid
annotated property: has_related_synonym
annotated target: Methylthio
has_synonym_type: Interim label from Unimod

5'-(N6-L-lysine)-L-topaquinone
type: Class
subclass of: MOD_00692
subclass of: MOD_02051
subclass of: MOD_02058
definition: A protein modification that effectively cross-links an L-lysine residue and an L-tyrosine residue by a carbon-nitrogen bond to form 5'-(N6-L-lysine)-L-topaquinone.
diff avg: 11.97
diff formula: C 0 H -4 N 0 O 1
diff mono: 11.963614
formula: C 15 H 17 N 3 O 4
mass avg: 303.32
mass mono: 303.12192
origin: K, Y
source: natural
database_cross_reference: uniprot.ptm:PTM-0171
has_exact_synonym: 1-[(S)-5-amino-5-carboxypentyl]amino-2-[(S)-2-amino-2-carboxyethyl]-2,6-cyclohexadien-4,5-dione
has_exact_synonym: 2'-(L-lys-N6-yl)-L-4',5'-topaquinone
has_exact_synonym: 2'-(L-lysine)-L-tyrosyl-4',5'-quinone
has_exact_synonym: CROSSLNK Lysine tyrosylquinone (Lys-Tyr)
has_exact_synonym: CROSSLNK Lysine tyrosylquinone (Tyr-Lys)
has_exact_synonym: LTQ
has_exact_synonym: lysyl oxidase cofactor
has_obo_namespace: PSI-MOD
id: MOD:00238
comment: Cross-link 2; secondary to RESID:AA0147.

Axiom
annotated source: 5'-(N6-L-lysine)-L-topaquinone
annotated property: definition
annotated target: A protein modification that effectively cross-links an L-lysine residue and an L-tyrosine residue by a carbon-nitrogen bond to form 5'-(N6-L-lysine)-L-topaquinone.
database_cross_reference: PubMed:8688089
database_cross_reference: RESID:AA0233

Axiom
annotated source: 5'-(N6-L-lysine)-L-topaquinone
annotated property: has_exact_synonym
annotated target: 1-[(S)-5-amino-5-carboxypentyl]amino-2-[(S)-2-amino-2-carboxyethyl]-2,6-cyclohexadien-4,5-dione
has_synonym_type: Systematic name from RESID

Axiom
annotated source: 5'-(N6-L-lysine)-L-topaquinone
annotated property: has_exact_synonym
annotated target: 2'-(L-lys-N6-yl)-L-4',5'-topaquinone
has_synonym_type: Name from RESID

Axiom
annotated source: 5'-(N6-L-lysine)-L-topaquinone
annotated property: has_exact_synonym
annotated target: 2'-(L-lysine)-L-tyrosyl-4',5'-quinone
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 5'-(N6-L-lysine)-L-topaquinone
annotated property: has_exact_synonym
annotated target: CROSSLNK Lysine tyrosylquinone (Lys-Tyr)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: 5'-(N6-L-lysine)-L-topaquinone
annotated property: has_exact_synonym
annotated target: CROSSLNK Lysine tyrosylquinone (Tyr-Lys)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: 5'-(N6-L-lysine)-L-topaquinone
annotated property: has_exact_synonym
annotated target: LTQ
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 5'-(N6-L-lysine)-L-topaquinone
annotated property: has_exact_synonym
annotated target: lysyl oxidase cofactor
has_synonym_type: Alternate name from RESID

S-methyl-L-cysteine
type: Class
subclass of: S-methylated residue
subclass of: MOD_01682
definition: A protein modification that effectively converts an L-cysteine residue to S-methyl-L-cysteine.
diff avg: 14.03
diff formula: C 1 H 2 N 0 O 0 S 0
diff mono: 14.01565
formula: C 4 H 7 N 1 O 1 S 1
mass avg: 117.17
mass mono: 117.02483
origin: C
source: natural
database_cross_reference: Unimod:34
database_cross_reference: uniprot.ptm:PTM-0636
has_exact_synonym: (R)-2-amino-3-(methylsulfanyl)propanoic acid
has_exact_synonym: ACT_SITE S-methylcysteine intermediate
has_exact_synonym: L-3-(methylthio)alanine
has_exact_synonym: MOD_RES S-methylcysteine
has_exact_synonym: S-methyl-L-cysteine
has_exact_synonym: S-methylated L-cysteine
has_exact_synonym: SMeCys
has_obo_namespace: PSI-MOD
has_related_synonym: Methyl
has_related_synonym: Methylation
id: MOD:00239
in_subset: PSI-MOD-slim

Axiom
annotated source: S-methyl-L-cysteine
annotated property: definition
annotated target: A protein modification that effectively converts an L-cysteine residue to S-methyl-L-cysteine.
database_cross_reference: PubMed:10660523
database_cross_reference: PubMed:11875433
database_cross_reference: PubMed:1339288
database_cross_reference: RESID:AA0234
database_cross_reference: Unimod:34#C

Axiom
annotated source: S-methyl-L-cysteine
annotated property: has_exact_synonym
annotated target: (R)-2-amino-3-(methylsulfanyl)propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: S-methyl-L-cysteine
annotated property: has_exact_synonym
annotated target: ACT_SITE S-methylcysteine intermediate
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: S-methyl-L-cysteine
annotated property: has_exact_synonym
annotated target: L-3-(methylthio)alanine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-methyl-L-cysteine
annotated property: has_exact_synonym
annotated target: MOD_RES S-methylcysteine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: S-methyl-L-cysteine
annotated property: has_exact_synonym
annotated target: S-methyl-L-cysteine
has_synonym_type: Name from RESID

Axiom
annotated source: S-methyl-L-cysteine
annotated property: has_exact_synonym
annotated target: S-methylated L-cysteine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: S-methyl-L-cysteine
annotated property: has_exact_synonym
annotated target: SMeCys
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: S-methyl-L-cysteine
annotated property: has_related_synonym
annotated target: Methyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: S-methyl-L-cysteine
annotated property: has_related_synonym
annotated target: Methylation
has_synonym_type: Description (full_name) from Unimod

4-hydroxy-L-lysine
type: Class
subclass of: MOD_01047
definition: A protein modification that effectively converts an L-lysine residue to 4-hydroxy-L-lysine.
diff avg: 16.0
diff formula: C 0 H 0 N 0 O 1
diff mono: 15.994915
formula: C 6 H 12 N 2 O 2
mass avg: 144.17
mass mono: 144.08987
origin: K
source: artifact
database_cross_reference: uniprot.ptm:PTM-0664
has_exact_synonym: (2S,4R)-2,6-diamino-4-hydroxyhexanoic acid
has_exact_synonym: 4-hydroxy-L-lysine
has_exact_synonym: 4-hydroxylated L-lysine
has_exact_synonym: 4HyLys
has_exact_synonym: L-threo-gamma-hydroxylysine
has_exact_synonym: MOD_RES 4-hydroxylysine
has_exact_synonym: alpha,epsilon-diamino-gamma-hydroxycaproic acid
has_obo_namespace: PSI-MOD
id: MOD:00240
comment: This modification was not structurally confirmed. Later 5-hydroxy-L-lysine was found at a homologous position in the same protein from closely related species. This is a deprecated entry in RESID. It probably does not occur naturally [JSG].

Axiom
annotated source: 4-hydroxy-L-lysine
annotated property: definition
annotated target: A protein modification that effectively converts an L-lysine residue to 4-hydroxy-L-lysine.
database_cross_reference: ChEBI:141495
database_cross_reference: PubMed:4005040
database_cross_reference: RESID:AA0235

Axiom
annotated source: 4-hydroxy-L-lysine
annotated property: has_exact_synonym
annotated target: (2S,4R)-2,6-diamino-4-hydroxyhexanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: 4-hydroxy-L-lysine
annotated property: has_exact_synonym
annotated target: 4-hydroxy-L-lysine
has_synonym_type: Name from RESID

Axiom
annotated source: 4-hydroxy-L-lysine
annotated property: has_exact_synonym
annotated target: 4-hydroxylated L-lysine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: 4-hydroxy-L-lysine
annotated property: has_exact_synonym
annotated target: 4HyLys
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: 4-hydroxy-L-lysine
annotated property: has_exact_synonym
annotated target: L-threo-gamma-hydroxylysine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 4-hydroxy-L-lysine
annotated property: has_exact_synonym
annotated target: MOD_RES 4-hydroxylysine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: 4-hydroxy-L-lysine
annotated property: has_exact_synonym
annotated target: alpha,epsilon-diamino-gamma-hydroxycaproic acid
has_synonym_type: Alternate name from RESID

N4-hydroxymethyl-L-asparagine
type: Class
subclass of: MOD_00903
definition: A protein modification that effectively converts an L-asparagine residue to N4-hydroxymethyl-L-asparagine.
diff avg: 30.03
diff formula: C 1 H 2 N 0 O 1
diff mono: 30.010565
formula: C 5 H 8 N 2 O 3
mass avg: 144.13
mass mono: 144.0535
origin: N
source: artifact
database_cross_reference: Unimod:414
has_exact_synonym: (2S)-2-amino-4-[(hydroxymethyl)amino]-4-oxobutanoic acid
has_exact_synonym: 2-amino-N4-hydroxymethylbutanediamic acid
has_exact_synonym: N(gamma)-hydroxymethylasparagine
has_exact_synonym: N4-hydroxymethyl-L-asparagine
has_exact_synonym: N4-hydroxymethylasparagine
has_exact_synonym: beta-hydroxymethylasparagine
has_obo_namespace: PSI-MOD
has_related_synonym: Hydroxymethyl
has_related_synonym: hydroxymethyl
id: MOD:00241
comment: N4-methyl-L-asparagine, see MOD:0079, was found at a homologous position of the same protein in a closely related species. Since the peptide containing this modification was obtained by enzymatic cleavage, not cyanogen bromide cleavage, it could have experienced oxidation of the following methionine residue, leading to the erroneous attribution of a mass of 29 for the modification rather than 14. comment: This is a deprecated entry in RESID. It probably does not occur naturally [JSG].

Axiom
annotated source: N4-hydroxymethyl-L-asparagine
annotated property: definition
annotated target: A protein modification that effectively converts an L-asparagine residue to N4-hydroxymethyl-L-asparagine.
database_cross_reference: RESID:AA0236
database_cross_reference: Unimod:414

Axiom
annotated source: N4-hydroxymethyl-L-asparagine
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-4-[(hydroxymethyl)amino]-4-oxobutanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N4-hydroxymethyl-L-asparagine
annotated property: has_exact_synonym
annotated target: 2-amino-N4-hydroxymethylbutanediamic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N4-hydroxymethyl-L-asparagine
annotated property: has_exact_synonym
annotated target: N(gamma)-hydroxymethylasparagine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N4-hydroxymethyl-L-asparagine
annotated property: has_exact_synonym
annotated target: N4-hydroxymethyl-L-asparagine
has_synonym_type: Name from RESID

Axiom
annotated source: N4-hydroxymethyl-L-asparagine
annotated property: has_exact_synonym
annotated target: N4-hydroxymethylasparagine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N4-hydroxymethyl-L-asparagine
annotated property: has_exact_synonym
annotated target: beta-hydroxymethylasparagine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N4-hydroxymethyl-L-asparagine
annotated property: has_related_synonym
annotated target: Hydroxymethyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: N4-hydroxymethyl-L-asparagine
annotated property: has_related_synonym
annotated target: hydroxymethyl
has_synonym_type: Description (full_name) from Unimod

O-(ADP-ribosyl)-L-serine
type: Class
subclass of: MOD_00752
subclass of: MOD_00916
definition: A protein modification that effectively converts an L-serine residue to O-(ADP-ribosyl)-L-serine.
diff avg: 541.3
diff formula: C 15 H 21 N 5 O 13 P 2
diff mono: 541.0611
formula: C 18 H 26 N 6 O 15 P 2
mass avg: 628.38
mass mono: 628.09314
origin: S
source: natural
database_cross_reference: Unimod:213
database_cross_reference: uniprot.ptm:PTM-0056
has_exact_synonym: (S)-2-amino-3-([adenosine 5'-(trihydrogen diphosphate) 5'->5'-ester with alpha-D-ribofuranosyl]oxy)-propanoic acid
has_exact_synonym: MOD_RES ADP-ribosylserine
has_exact_synonym: O-(ADP-ribosyl)-L-serine
has_exact_synonym: O3-(ADP-ribosyl)-L-serine
has_exact_synonym: O3-[alpha-D-ribofuranoside 5'->5'-ester with adenosine 5'-(trihydrogen diphosphate)]-L-serine
has_exact_synonym: O3-alpha-D-ribofuranosyl-L-serine 5'->5'-ester with adenosine 5'-(trihydrogen diphosphate)
has_exact_synonym: OADPRibSer
has_obo_namespace: PSI-MOD
has_related_synonym: ADP Ribose addition
has_related_synonym: ADP-Ribosyl
id: MOD:00242
in_subset: PSI-MOD-slim

Axiom
annotated source: O-(ADP-ribosyl)-L-serine
annotated property: definition
annotated target: A protein modification that effectively converts an L-serine residue to O-(ADP-ribosyl)-L-serine.
database_cross_reference: PubMed:15842200
database_cross_reference: PubMed:3141412
database_cross_reference: RESID:AA0237
database_cross_reference: Unimod:213#S

Axiom
annotated source: O-(ADP-ribosyl)-L-serine
annotated property: has_exact_synonym
annotated target: (S)-2-amino-3-([adenosine 5'-(trihydrogen diphosphate) 5'->5'-ester with alpha-D-ribofuranosyl]oxy)-propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: O-(ADP-ribosyl)-L-serine
annotated property: has_exact_synonym
annotated target: MOD_RES ADP-ribosylserine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: O-(ADP-ribosyl)-L-serine
annotated property: has_exact_synonym
annotated target: O-(ADP-ribosyl)-L-serine
has_synonym_type: Name from RESID

Axiom
annotated source: O-(ADP-ribosyl)-L-serine
annotated property: has_exact_synonym
annotated target: O3-(ADP-ribosyl)-L-serine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-(ADP-ribosyl)-L-serine
annotated property: has_exact_synonym
annotated target: O3-[alpha-D-ribofuranoside 5'->5'-ester with adenosine 5'-(trihydrogen diphosphate)]-L-serine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-(ADP-ribosyl)-L-serine
annotated property: has_exact_synonym
annotated target: O3-alpha-D-ribofuranosyl-L-serine 5'->5'-ester with adenosine 5'-(trihydrogen diphosphate)
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-(ADP-ribosyl)-L-serine
annotated property: has_exact_synonym
annotated target: OADPRibSer
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: O-(ADP-ribosyl)-L-serine
annotated property: has_related_synonym
annotated target: ADP Ribose addition
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: O-(ADP-ribosyl)-L-serine
annotated property: has_related_synonym
annotated target: ADP-Ribosyl
has_synonym_type: Agreed label from MS community

L-cysteine oxazole-4-carboxylic acid
type: Class
subclass of: MOD_01421
subclass of: MOD_02044
subclass of: MOD_02082
definition: A protein modification that effectively crosslinks an L-cysteine residue and an L-serine residue to form L-cysteine oxazole-4-carboxylic acid.
diff avg: -20.03
diff formula: C 0 H -4 N 0 O -1 S 0
diff mono: -20.026215
formula: C 6 H 6 N 2 O 2 S 1
mass avg: 170.19
mass mono: 170.015
origin: C, S
source: natural
database_cross_reference: uniprot.ptm:PTM-0376
has_exact_synonym: 2-(1-azanyl-2-sulfanylethyl)-4-oxazolecarboxylic acid
has_exact_synonym: 2-[(1R)-1-amino-2-sulfanylethyl]-1,3-oxazole-4-carboxylic acid
has_exact_synonym: CROSSLNK Oxazole-4-carboxylic acid (Cys-Ser)
has_exact_synonym: L-cysteine oxazole-4-carboxylic acid
has_obo_namespace: PSI-MOD
id: MOD:00243
comment: Cross-link 2.

Axiom
annotated source: L-cysteine oxazole-4-carboxylic acid
annotated property: definition
annotated target: A protein modification that effectively crosslinks an L-cysteine residue and an L-serine residue to form L-cysteine oxazole-4-carboxylic acid.
database_cross_reference: PubMed:8183941
database_cross_reference: PubMed:8895467
database_cross_reference: RESID:AA0238

Axiom
annotated source: L-cysteine oxazole-4-carboxylic acid
annotated property: has_exact_synonym
annotated target: 2-(1-azanyl-2-sulfanylethyl)-4-oxazolecarboxylic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteine oxazole-4-carboxylic acid
annotated property: has_exact_synonym
annotated target: 2-[(1R)-1-amino-2-sulfanylethyl]-1,3-oxazole-4-carboxylic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-cysteine oxazole-4-carboxylic acid
annotated property: has_exact_synonym
annotated target: CROSSLNK Oxazole-4-carboxylic acid (Cys-Ser)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-cysteine oxazole-4-carboxylic acid
annotated property: has_exact_synonym
annotated target: L-cysteine oxazole-4-carboxylic acid
has_synonym_type: Name from RESID

L-cysteine oxazoline-4-carboxylic acid
type: Class
subclass of: MOD_00954
subclass of: MOD_01421
subclass of: MOD_02044
definition: A protein modification that effectively crosslinks an L-cysteine residue and an L-serine residue to form L-cysteine oxazoline-4-carboxylic acid.
diff avg: -18.02
diff formula: C 0 H -2 N 0 O -1 S 0
diff mono: -18.010565
formula: C 6 H 8 N 2 O 2 S 1
mass avg: 172.2
mass mono: 172.03065
origin: C, S
source: natural
database_cross_reference: uniprot.ptm:PTM-0381
has_exact_synonym: (4S)-2-[(1R)-1-amino-2-sulfanylethyl]-4,5-dihydro-1,3-oxazole-4-carboxylic acid
has_exact_synonym: 2-[1-azanyl-2-sulfanylethyl]-4,5-dihydro-1,3-oxazole-4-carboxylic acid
has_exact_synonym: CROSSLNK Oxazoline-4-carboxylic acid (Cys-Ser)
has_exact_synonym: L-cysteine oxazoline-4-carboxylic acid
has_obo_namespace: PSI-MOD
id: MOD:00244
comment: Cross-link 2.

Axiom
annotated source: L-cysteine oxazoline-4-carboxylic acid
annotated property: definition
annotated target: A protein modification that effectively crosslinks an L-cysteine residue and an L-serine residue to form L-cysteine oxazoline-4-carboxylic acid.
database_cross_reference: PubMed:1880060
database_cross_reference: RESID:AA0239

Axiom
annotated source: L-cysteine oxazoline-4-carboxylic acid
annotated property: has_exact_synonym
annotated target: (4S)-2-[(1R)-1-amino-2-sulfanylethyl]-4,5-dihydro-1,3-oxazole-4-carboxylic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-cysteine oxazoline-4-carboxylic acid
annotated property: has_exact_synonym
annotated target: 2-[1-azanyl-2-sulfanylethyl]-4,5-dihydro-1,3-oxazole-4-carboxylic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteine oxazoline-4-carboxylic acid
annotated property: has_exact_synonym
annotated target: CROSSLNK Oxazoline-4-carboxylic acid (Cys-Ser)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-cysteine oxazoline-4-carboxylic acid
annotated property: has_exact_synonym
annotated target: L-cysteine oxazoline-4-carboxylic acid
has_synonym_type: Name from RESID

glycine oxazole-4-carboxylic acid
type: Class
subclass of: MOD_01421
subclass of: MOD_02047
subclass of: MOD_02082
definition: A protein modification that effectively crosslinks a glycine residue and an L-serine residue to form glycine oxazole-4-carboxylic acid.
diff avg: -20.03
diff formula: C 0 H -4 N 0 O -1
diff mono: -20.026215
formula: C 5 H 4 N 2 O 2
mass avg: 124.1
mass mono: 124.027275
origin: G, S
source: natural
database_cross_reference: uniprot.ptm:PTM-0377
has_exact_synonym: 2-aminomethyl-1,3-oxazole-4-carboxylic acid
has_exact_synonym: 2-azanylmethyl-1,3-oxazole-4-carboxylic acid
has_exact_synonym: CROSSLNK Oxazole-4-carboxylic acid (Gly-Ser)
has_exact_synonym: glycine oxazole-4-carboxylic acid
has_obo_namespace: PSI-MOD
id: MOD:00245
comment: Cross-link 2.

Axiom
annotated source: glycine oxazole-4-carboxylic acid
annotated property: definition
annotated target: A protein modification that effectively crosslinks a glycine residue and an L-serine residue to form glycine oxazole-4-carboxylic acid.
database_cross_reference: PubMed:8183941
database_cross_reference: PubMed:8895467
database_cross_reference: RESID:AA0240

Axiom
annotated source: glycine oxazole-4-carboxylic acid
annotated property: has_exact_synonym
annotated target: 2-aminomethyl-1,3-oxazole-4-carboxylic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: glycine oxazole-4-carboxylic acid
annotated property: has_exact_synonym
annotated target: 2-azanylmethyl-1,3-oxazole-4-carboxylic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: glycine oxazole-4-carboxylic acid
annotated property: has_exact_synonym
annotated target: CROSSLNK Oxazole-4-carboxylic acid (Gly-Ser)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: glycine oxazole-4-carboxylic acid
annotated property: has_exact_synonym
annotated target: glycine oxazole-4-carboxylic acid
has_synonym_type: Name from RESID

glycine thiazole-4-carboxylic acid
type: Class
subclass of: MOD_01420
subclass of: MOD_02047
subclass of: MOD_02082
definition: A protein modification that effectively crosslinks an L-cysteine residue and a glycine residue to form glycine thiazole-4-carboxylic acid.
diff avg: -20.03
diff formula: C 0 H -4 N 0 O -1 S 0
diff mono: -20.026215
formula: C 5 H 4 N 2 O 1 S 1
mass avg: 140.16
mass mono: 140.00444
origin: C, G
source: natural
database_cross_reference: uniprot.ptm:PTM-0378
has_exact_synonym: 2-(aminomethyl)-1,3-thiazole-4-carboxylic acid
has_exact_synonym: 2-(azanylmethyl)-1,3-thiazole-4-carboxylic acid
has_exact_synonym: CROSSLNK Thiazole-4-carboxylic acid (Gly-Cys)
has_exact_synonym: glycine thiazole-4-carboxylic acid
has_obo_namespace: PSI-MOD
id: MOD:00246
comment: Cross-link 2.

Axiom
annotated source: glycine thiazole-4-carboxylic acid
annotated property: definition
annotated target: A protein modification that effectively crosslinks an L-cysteine residue and a glycine residue to form glycine thiazole-4-carboxylic acid.
database_cross_reference: ChEBI:21276
database_cross_reference: PubMed:8183941
database_cross_reference: PubMed:8895467
database_cross_reference: RESID:AA0241

Axiom
annotated source: glycine thiazole-4-carboxylic acid
annotated property: has_exact_synonym
annotated target: 2-(aminomethyl)-1,3-thiazole-4-carboxylic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: glycine thiazole-4-carboxylic acid
annotated property: has_exact_synonym
annotated target: 2-(azanylmethyl)-1,3-thiazole-4-carboxylic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: glycine thiazole-4-carboxylic acid
annotated property: has_exact_synonym
annotated target: CROSSLNK Thiazole-4-carboxylic acid (Gly-Cys)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: glycine thiazole-4-carboxylic acid
annotated property: has_exact_synonym
annotated target: glycine thiazole-4-carboxylic acid
has_synonym_type: Name from RESID

L-serine thiazole-4-carboxylic acid
type: Class
subclass of: MOD_01420
subclass of: MOD_02055
subclass of: MOD_02082
definition: A protein modification that effectively crosslinks an L-cysteine residue and an L-serine residue to form L-serine thiazole-4-carboxylic acid.
diff avg: -20.03
diff formula: C 0 H -4 N 0 O -1 S 0
diff mono: -20.026215
formula: C 6 H 6 N 2 O 2 S 1
mass avg: 170.19
mass mono: 170.015
origin: C, S
source: natural
database_cross_reference: uniprot.ptm:PTM-0363
has_exact_synonym: 2-[(1S)-1-amino-2-hydroxyethyl]-1,3-thiazole-4-carboxylic acid
has_exact_synonym: 2-[1-azanyl-2-hydroxyethyl]-1,3-thiazole-4-carboxylic acid
has_exact_synonym: CROSSLNK Thiazole-4-carboxylic acid (Ser-Cys)
has_exact_synonym: L-serine thiazole-4-carboxylic acid
has_obo_namespace: PSI-MOD
id: MOD:00247
comment: Cross-link 2.

Axiom
annotated source: L-serine thiazole-4-carboxylic acid
annotated property: definition
annotated target: A protein modification that effectively crosslinks an L-cysteine residue and an L-serine residue to form L-serine thiazole-4-carboxylic acid.
database_cross_reference: PubMed:8183941
database_cross_reference: PubMed:8895467
database_cross_reference: RESID:AA0242

Axiom
annotated source: L-serine thiazole-4-carboxylic acid
annotated property: has_exact_synonym
annotated target: 2-[(1S)-1-amino-2-hydroxyethyl]-1,3-thiazole-4-carboxylic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-serine thiazole-4-carboxylic acid
annotated property: has_exact_synonym
annotated target: 2-[1-azanyl-2-hydroxyethyl]-1,3-thiazole-4-carboxylic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-serine thiazole-4-carboxylic acid
annotated property: has_exact_synonym
annotated target: CROSSLNK Thiazole-4-carboxylic acid (Ser-Cys)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-serine thiazole-4-carboxylic acid
annotated property: has_exact_synonym
annotated target: L-serine thiazole-4-carboxylic acid
has_synonym_type: Name from RESID

L-phenylalanine thiazole-4-carboxylic acid
type: Class
subclass of: MOD_01420
subclass of: MOD_02053
subclass of: MOD_02082
definition: A protein modification that effectively crosslinks an L-cysteine residue and an L-phenylalanine residue to form L-phenylalanine thiazole-4-carboxylic acid.
diff avg: -20.03
diff formula: C 0 H -4 N 0 O -1 S 0
diff mono: -20.026215
formula: C 12 H 10 N 2 O 1 S 1
mass avg: 230.29
mass mono: 230.05139
origin: C, F
source: natural
database_cross_reference: uniprot.ptm:PTM-0375
has_exact_synonym: 2-[(1S)-1-amino-2-phenylethyl]-1,3-thiazole-4-carboxylic acid
has_exact_synonym: 2-[1-azanyl-2-phenylethyl]-1,3-thiazole-4-carboxylic acid
has_exact_synonym: CROSSLNK Thiazole-4-carboxylic acid (Phe-Cys)
has_exact_synonym: L-phenylalanine thiazole-4-carboxylic acid
has_obo_namespace: PSI-MOD
id: MOD:00248
comment: Cross-link 2.

Axiom
annotated source: L-phenylalanine thiazole-4-carboxylic acid
annotated property: definition
annotated target: A protein modification that effectively crosslinks an L-cysteine residue and an L-phenylalanine residue to form L-phenylalanine thiazole-4-carboxylic acid.
database_cross_reference: PubMed:1880060
database_cross_reference: RESID:AA0243

Axiom
annotated source: L-phenylalanine thiazole-4-carboxylic acid
annotated property: has_exact_synonym
annotated target: 2-[(1S)-1-amino-2-phenylethyl]-1,3-thiazole-4-carboxylic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-phenylalanine thiazole-4-carboxylic acid
annotated property: has_exact_synonym
annotated target: 2-[1-azanyl-2-phenylethyl]-1,3-thiazole-4-carboxylic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-phenylalanine thiazole-4-carboxylic acid
annotated property: has_exact_synonym
annotated target: CROSSLNK Thiazole-4-carboxylic acid (Phe-Cys)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-phenylalanine thiazole-4-carboxylic acid
annotated property: has_exact_synonym
annotated target: L-phenylalanine thiazole-4-carboxylic acid
has_synonym_type: Name from RESID

L-cysteine thiazole-4-carboxylic acid
type: Class
subclass of: MOD_01420
subclass of: MOD_02082
definition: A protein modification that effectively crosslinks two L-cysteine residues to form L-cysteine thiazole-4-carboxylic acid.
diff avg: -20.03
diff formula: C 0 H -4 N 0 O -1 S 0
diff mono: -20.026215
formula: C 6 H 6 N 2 O 1 S 2
mass avg: 186.25
mass mono: 185.99216
origin: C, C
source: natural
database_cross_reference: uniprot.ptm:PTM-0360
has_exact_synonym: 2-[(1S)-1-amino-2-sulfanylethyl]-1,3-thiazole-4-carboxylic acid
has_exact_synonym: 2-[1-azanyl-2-sulfanylethyl]-1,3-thiazole-4-carboxylic acid
has_exact_synonym: CROSSLNK Thiazole-4-carboxylic acid (Cys-Cys)
has_exact_synonym: L-cysteine thiazole-4-carboxylic acid
has_obo_namespace: PSI-MOD
id: MOD:00249
comment: Cross-link 2.

Axiom
annotated source: L-cysteine thiazole-4-carboxylic acid
annotated property: definition
annotated target: A protein modification that effectively crosslinks two L-cysteine residues to form L-cysteine thiazole-4-carboxylic acid.
database_cross_reference: PubMed:1880060
database_cross_reference: RESID:AA0244

Axiom
annotated source: L-cysteine thiazole-4-carboxylic acid
annotated property: has_exact_synonym
annotated target: 2-[(1S)-1-amino-2-sulfanylethyl]-1,3-thiazole-4-carboxylic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-cysteine thiazole-4-carboxylic acid
annotated property: has_exact_synonym
annotated target: 2-[1-azanyl-2-sulfanylethyl]-1,3-thiazole-4-carboxylic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteine thiazole-4-carboxylic acid
annotated property: has_exact_synonym
annotated target: CROSSLNK Thiazole-4-carboxylic acid (Cys-Cys)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-cysteine thiazole-4-carboxylic acid
annotated property: has_exact_synonym
annotated target: L-cysteine thiazole-4-carboxylic acid
has_synonym_type: Name from RESID

L-lysine thiazole-4-carboxylic acid
type: Class
subclass of: MOD_01420
subclass of: MOD_02051
subclass of: MOD_02082
definition: A protein modification that effectively crosslinks an L-cysteine residue and an L-lysine residue to form L-lysine thiazole-4-carboxylic acid.
diff avg: -20.03
diff formula: C 0 H -4 N 0 O -1 S 0
diff mono: -20.026215
formula: C 9 H 13 N 3 O 1 S 1
mass avg: 211.28
mass mono: 211.07793
origin: C, K
source: hypothetical
has_exact_synonym: 2-[(1S)-1,5-diaminopentyl]-1,3-thiazole-4-carboxylic acid
has_exact_synonym: 2-[1,5-bis(azanyl)pentyl]-1,3-thiazole-4-carboxylic acid
has_exact_synonym: L-lysine thiazole-4-carboxylic acid
has_obo_namespace: PSI-MOD
id: MOD:00250
comment: Cross-link 2. Lysine is now thought not to be encoded in the peptide sequence modified to produce GE2270. See RESID:AA0470. This is a deprecated entry in RESID. It probably does not occur naturally [JSG].

Axiom
annotated source: L-lysine thiazole-4-carboxylic acid
annotated property: definition
annotated target: A protein modification that effectively crosslinks an L-cysteine residue and an L-lysine residue to form L-lysine thiazole-4-carboxylic acid.
database_cross_reference: PubMed:1880060
database_cross_reference: RESID:AA0245

Axiom
annotated source: L-lysine thiazole-4-carboxylic acid
annotated property: has_exact_synonym
annotated target: 2-[(1S)-1,5-diaminopentyl]-1,3-thiazole-4-carboxylic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-lysine thiazole-4-carboxylic acid
annotated property: has_exact_synonym
annotated target: 2-[1,5-bis(azanyl)pentyl]-1,3-thiazole-4-carboxylic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-lysine thiazole-4-carboxylic acid
annotated property: has_exact_synonym
annotated target: L-lysine thiazole-4-carboxylic acid
has_synonym_type: Name from RESID

O-(phospho-5'-DNA)-L-serine
type: Class
subclass of: MOD_00750
subclass of: MOD_00916
definition: A protein modification that effectively crosslinks an L-serine residue and the 5'-end of DNA through a phosphodiester bond to form O-(phospho-5'-DNA)-L-serine.
origin: S
source: natural
database_cross_reference: uniprot.ptm:PTM-0226
has_exact_synonym: (S)-2-amino-3-(5'-deoxyribonucleic acid phosphonoxy)propanoic acid
has_exact_synonym: ACT_SITE O-(5'-phospho-DNA)-serine intermediate
has_exact_synonym: MOD_RES O-(5'-phospho-DNA)-serine
has_exact_synonym: O-(phospho-5'-DNA)-L-serine
has_exact_synonym: O3-(phospho-5'-DNA)-L-serine
has_exact_synonym: O3-L-serine 5'-DNA phosphodiester
has_obo_namespace: PSI-MOD
id: MOD:00251

Axiom
annotated source: O-(phospho-5'-DNA)-L-serine
annotated property: definition
annotated target: A protein modification that effectively crosslinks an L-serine residue and the 5'-end of DNA through a phosphodiester bond to form O-(phospho-5'-DNA)-L-serine.
database_cross_reference: PubMed:7142163
database_cross_reference: PubMed:7265205
database_cross_reference: RESID:AA0246

Axiom
annotated source: O-(phospho-5'-DNA)-L-serine
annotated property: has_exact_synonym
annotated target: (S)-2-amino-3-(5'-deoxyribonucleic acid phosphonoxy)propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: O-(phospho-5'-DNA)-L-serine
annotated property: has_exact_synonym
annotated target: ACT_SITE O-(5'-phospho-DNA)-serine intermediate
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: O-(phospho-5'-DNA)-L-serine
annotated property: has_exact_synonym
annotated target: MOD_RES O-(5'-phospho-DNA)-serine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: O-(phospho-5'-DNA)-L-serine
annotated property: has_exact_synonym
annotated target: O-(phospho-5'-DNA)-L-serine
has_synonym_type: Name from RESID

Axiom
annotated source: O-(phospho-5'-DNA)-L-serine
annotated property: has_exact_synonym
annotated target: O3-(phospho-5'-DNA)-L-serine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-(phospho-5'-DNA)-L-serine
annotated property: has_exact_synonym
annotated target: O3-L-serine 5'-DNA phosphodiester
has_synonym_type: Alternate name from RESID

keratan sulfate D-glucuronosyl-D-galactosyl-D-galactosyl-D-xylosyl-L-threonine
type: Class
subclass of: O-glycosyl-L-threonine
definition: A protein modification that effectively cross-links an L-threonine residue to the polymer keratan sulfate by a D-glucuronosyl-D-galactosyl-D-galactosyl-D-xylosyl tetrasaccharide.
origin: T
source: natural
has_exact_synonym: keratan sulfate D-glucuronosyl-D-galactosyl-D-galactosyl-D-xylosyl-L-threonine
has_exact_synonym: keratosulfate
has_exact_synonym: poly[beta-1,4-(2-acetamido-2-deoxy-6-sulfate D-glucosyl)-beta-1,3-D-galactosyl]-beta-1,4-D-glucopyranuronosyl-beta-1,3-D-galactosyl-beta-1,3-D-galactosyl-beta-1,4-D-xylosyl-beta-1,3-L-threonine
has_obo_namespace: PSI-MOD
id: MOD:00252

Axiom
annotated source: keratan sulfate D-glucuronosyl-D-galactosyl-D-galactosyl-D-xylosyl-L-threonine
annotated property: definition
annotated target: A protein modification that effectively cross-links an L-threonine residue to the polymer keratan sulfate by a D-glucuronosyl-D-galactosyl-D-galactosyl-D-xylosyl tetrasaccharide.
database_cross_reference: PubMed:1417734
database_cross_reference: PubMed:3472204
database_cross_reference: RESID:AA0247

Axiom
annotated source: keratan sulfate D-glucuronosyl-D-galactosyl-D-galactosyl-D-xylosyl-L-threonine
annotated property: has_exact_synonym
annotated target: keratan sulfate D-glucuronosyl-D-galactosyl-D-galactosyl-D-xylosyl-L-threonine
has_synonym_type: Name from RESID

Axiom
annotated source: keratan sulfate D-glucuronosyl-D-galactosyl-D-galactosyl-D-xylosyl-L-threonine
annotated property: has_exact_synonym
annotated target: keratosulfate
has_synonym_type: Alternate name from RESID

Axiom
annotated source: keratan sulfate D-glucuronosyl-D-galactosyl-D-galactosyl-D-xylosyl-L-threonine
annotated property: has_exact_synonym
annotated target: poly[beta-1,4-(2-acetamido-2-deoxy-6-sulfate D-glucosyl)-beta-1,3-D-galactosyl]-beta-1,4-D-glucopyranuronosyl-beta-1,3-D-galactosyl-beta-1,3-D-galactosyl-beta-1,4-D-xylosyl-beta-1,3-L-threonine
has_synonym_type: Systematic name from RESID

L-selenocysteinyl molybdenum bis(molybdopterin guanine dinucleotide) (Sec)
type: Class
subclass of: MOD_00744
subclass of: MOD_01158
definition: A protein modification that effectively converts an L-selenocysteine residue to L-selenocysteinyl molybdenum bis(molybdopterin guanine dinucleotide).
diff avg: 1572.02
diff formula: C 40 H 47 Mo 1 N 20 O 26 P 4 S 4 Se 0
diff mono: 1572.9857
formula: C 43 H 52 Mo 1 N 21 O 27 P 4 S 4 Se 1
mass avg: 1722.07
mass mono: 1723.9395
origin: U
source: natural
database_cross_reference: Unimod:415
has_obo_namespace: PSI-MOD
id: MOD:00253

Axiom
annotated source: L-selenocysteinyl molybdenum bis(molybdopterin guanine dinucleotide) (Sec)
annotated property: definition
annotated target: A protein modification that effectively converts an L-selenocysteine residue to L-selenocysteinyl molybdenum bis(molybdopterin guanine dinucleotide).
database_cross_reference: PubMed:14235557
database_cross_reference: PubMed:2211698
database_cross_reference: PubMed:8052647
database_cross_reference: PubMed:9036855
database_cross_reference: RESID:AA0248#SEC
database_cross_reference: Unimod:415

O4'-(phospho-5'-RNA)-L-tyrosine
type: Class
subclass of: MOD_00751
subclass of: MOD_00919
definition: A protein modification that effectively crosslinks an L-tyrosine residue and the 5'-end of RNA through a phosphodiester to form O4'-(phospho-5'-RNA)-L-tyrosine.
origin: Y
source: natural
database_cross_reference: uniprot.ptm:PTM-0229
has_exact_synonym: (S)-2-amino-3-[4-(5'-ribonucleic acid phosphonoxy)phenyl]propanoic acid
has_exact_synonym: MOD_RES O-(5'-phospho-RNA)-tyrosine
has_exact_synonym: O4'-(phospho-5'-RNA)-L-tyrosine
has_exact_synonym: O4'-L-tyrosine 5'-RNA phosphodiester
has_obo_namespace: PSI-MOD
id: MOD:00254

Axiom
annotated source: O4'-(phospho-5'-RNA)-L-tyrosine
annotated property: definition
annotated target: A protein modification that effectively crosslinks an L-tyrosine residue and the 5'-end of RNA through a phosphodiester to form O4'-(phospho-5'-RNA)-L-tyrosine.
database_cross_reference: PubMed:1702164
database_cross_reference: PubMed:209034
database_cross_reference: PubMed:217003
database_cross_reference: PubMed:6264310
database_cross_reference: RESID:AA0249

Axiom
annotated source: O4'-(phospho-5'-RNA)-L-tyrosine
annotated property: has_exact_synonym
annotated target: (S)-2-amino-3-[4-(5'-ribonucleic acid phosphonoxy)phenyl]propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: O4'-(phospho-5'-RNA)-L-tyrosine
annotated property: has_exact_synonym
annotated target: MOD_RES O-(5'-phospho-RNA)-tyrosine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: O4'-(phospho-5'-RNA)-L-tyrosine
annotated property: has_exact_synonym
annotated target: O4'-(phospho-5'-RNA)-L-tyrosine
has_synonym_type: Name from RESID

Axiom
annotated source: O4'-(phospho-5'-RNA)-L-tyrosine
annotated property: has_exact_synonym
annotated target: O4'-L-tyrosine 5'-RNA phosphodiester
has_synonym_type: Alternate name from RESID

3-(3'-L-histidyl)-L-tyrosine
type: Class
subclass of: MOD_00692
subclass of: MOD_02048
subclass of: MOD_02058
definition: A protein modification that effectively cross-links an L-histidine residue and an L-tyrosine residue by a carbon-nitrogen bond to form 3-(3'-L-histidyl)-L-tyrosine.
diff avg: -2.02
diff formula: C 0 H -2 N 0 O 0
diff mono: -2.01565
formula: C 15 H 14 N 4 O 3
mass avg: 298.3
mass mono: 298.1066
origin: H, Y
source: natural
database_cross_reference: uniprot.ptm:PTM-0027
has_exact_synonym: (2S,3R)-2-amino-3-(5-[(2S)-2-amino-2-carboxyethyl]-1H-imidazol-1-yl)-3-(4-hydroxyphenyl)propanoic acid
has_exact_synonym: 3-(3'-L-histidyl)-L-tyrosine
has_exact_synonym: 3-(N3'-histidyl)tyrosine
has_exact_synonym: 3-(pi-histidyl)tyrosine
has_exact_synonym: 3-(pros-histidyl)tyrosine
has_exact_synonym: CROSSLNK 3'-histidyl-3-tyrosine (His-Tyr)
has_exact_synonym: beta-(N(delta)-histidyl)tyrosine
has_exact_synonym: beta-(N3'-histidyl)tyrosine
has_obo_namespace: PSI-MOD
id: MOD:00255
comment: Cross-link 2.

Axiom
annotated source: 3-(3'-L-histidyl)-L-tyrosine
annotated property: definition
annotated target: A protein modification that effectively cross-links an L-histidine residue and an L-tyrosine residue by a carbon-nitrogen bond to form 3-(3'-L-histidyl)-L-tyrosine.
database_cross_reference: PubMed:9144772
database_cross_reference: RESID:AA0250

Axiom
annotated source: 3-(3'-L-histidyl)-L-tyrosine
annotated property: has_exact_synonym
annotated target: (2S,3R)-2-amino-3-(5-[(2S)-2-amino-2-carboxyethyl]-1H-imidazol-1-yl)-3-(4-hydroxyphenyl)propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: 3-(3'-L-histidyl)-L-tyrosine
annotated property: has_exact_synonym
annotated target: 3-(3'-L-histidyl)-L-tyrosine
has_synonym_type: Name from RESID

Axiom
annotated source: 3-(3'-L-histidyl)-L-tyrosine
annotated property: has_exact_synonym
annotated target: 3-(N3'-histidyl)tyrosine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 3-(3'-L-histidyl)-L-tyrosine
annotated property: has_exact_synonym
annotated target: 3-(pi-histidyl)tyrosine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 3-(3'-L-histidyl)-L-tyrosine
annotated property: has_exact_synonym
annotated target: 3-(pros-histidyl)tyrosine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 3-(3'-L-histidyl)-L-tyrosine
annotated property: has_exact_synonym
annotated target: CROSSLNK 3'-histidyl-3-tyrosine (His-Tyr)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: 3-(3'-L-histidyl)-L-tyrosine
annotated property: has_exact_synonym
annotated target: beta-(N(delta)-histidyl)tyrosine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 3-(3'-L-histidyl)-L-tyrosine
annotated property: has_exact_synonym
annotated target: beta-(N3'-histidyl)tyrosine
has_synonym_type: Alternate name from RESID

L-methionine sulfone
type: Class
subclass of: MOD_00709
subclass of: MOD_01855
definition: A protein modification that dioxygenates an L-methionine residue to L-methionine sulfone.
diff avg: 32.0
diff formula: C 0 H 0 N 0 O 2 S 0
diff mono: 31.989828
formula: C 5 H 9 N 1 O 3 S 1
mass avg: 163.19
mass mono: 163.03032
origin: M
source: natural
database_cross_reference: Unimod:425
database_cross_reference: uniprot.ptm:PTM-0175
has_exact_synonym: (2S)-2-amino-4-(methylsulfonyl)butanoic acid
has_exact_synonym: L-methionine S,S-dioxide
has_exact_synonym: L-methionine sulfone
has_exact_synonym: MOD_RES Methionine sulfone
has_exact_synonym: MetO2
has_exact_synonym: MethionylSulphone
has_exact_synonym: Oxidation of Methionine (to Sulphone)
has_exact_synonym: S,S-dioxymethionine
has_exact_synonym: suphonem
has_obo_namespace: PSI-MOD
has_related_synonym: Dioxidation
has_related_synonym: dihydroxy
id: MOD:00256
in_subset: PSI-MOD-slim
comment: DeltaMass gives the formula C 5 H 9 N 3 O 1 S 1 with mass 163

Axiom
annotated source: L-methionine sulfone
annotated property: definition
annotated target: A protein modification that dioxygenates an L-methionine residue to L-methionine sulfone.
database_cross_reference: DeltaMass:205
database_cross_reference: OMSSA:115
database_cross_reference: PubMed:12686488
database_cross_reference: PubMed:7786407
database_cross_reference: PubMed:7791219
database_cross_reference: PubMed:9252331
database_cross_reference: RESID:AA0251
database_cross_reference: Unimod:425#M

Axiom
annotated source: L-methionine sulfone
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-4-(methylsulfonyl)butanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-methionine sulfone
annotated property: has_exact_synonym
annotated target: L-methionine S,S-dioxide
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-methionine sulfone
annotated property: has_exact_synonym
annotated target: L-methionine sulfone
has_synonym_type: Name from RESID

Axiom
annotated source: L-methionine sulfone
annotated property: has_exact_synonym
annotated target: MOD_RES Methionine sulfone
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-methionine sulfone
annotated property: has_exact_synonym
annotated target: MetO2
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-methionine sulfone
annotated property: has_exact_synonym
annotated target: MethionylSulphone
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: L-methionine sulfone
annotated property: has_exact_synonym
annotated target: Oxidation of Methionine (to Sulphone)
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: L-methionine sulfone
annotated property: has_exact_synonym
annotated target: S,S-dioxymethionine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-methionine sulfone
annotated property: has_exact_synonym
annotated target: suphonem
has_synonym_type: Short label from OMSSA

Axiom
annotated source: L-methionine sulfone
annotated property: has_related_synonym
annotated target: Dioxidation
has_synonym_type: Agreed label from MS community

Axiom
annotated source: L-methionine sulfone
annotated property: has_related_synonym
annotated target: dihydroxy
has_synonym_type: Description (full_name) from Unimod

dipyrrolylmethanemethyl-L-cysteine
type: Class
subclass of: MOD_00905
definition: A protein modification that effectively converts an L-cysteine residue to dipyrrolylmethanemethyl-L-cysteine.
diff avg: 418.4
diff formula: C 20 H 22 N 2 O 8 S 0
diff mono: 418.1376
formula: C 23 H 27 N 3 O 9 S 1
mass avg: 521.54
mass mono: 521.1468
origin: C
source: natural
database_cross_reference: Unimod:416
database_cross_reference: uniprot.ptm:PTM-0421
has_exact_synonym: (2S)-3-[5-[4-(2-carboxy)ethyl-3-carboxymethyl-1-pyrrol-2-yl]methyl-4-(2-carboxy)ethyl-3-carboxymethyl-1-pyrrol-2-yl]methylthio-2-aminopropanoic acid
has_exact_synonym: 3-[5-(3-acetic acid-4-propanoic acid-1-pyrrol-2-yl)methyl-3-acetic acid-4-propanoic acid-1-pyrrol-2-yl]methylthio-2-aminopropanoic acid
has_exact_synonym: MOD_RES S-(dipyrrolylmethanemethyl)cysteine
has_exact_synonym: dipyrrole cofactor
has_exact_synonym: dipyrrolylmethanemethyl-L-cysteine
has_exact_synonym: dipyrrolylmethyl-L-cysteine
has_exact_synonym: dipyrromethane cofactor
has_exact_synonym: pyrromethane cofactor
has_obo_namespace: PSI-MOD
has_related_synonym: Dipyrrolylmethanemethyl
has_related_synonym: dipyrrolylmethanemethyl
id: MOD:00257

Axiom
annotated source: dipyrrolylmethanemethyl-L-cysteine
annotated property: definition
annotated target: A protein modification that effectively converts an L-cysteine residue to dipyrrolylmethanemethyl-L-cysteine.
database_cross_reference: PubMed:3042456
database_cross_reference: PubMed:3196304
database_cross_reference: PubMed:3421931
database_cross_reference: PubMed:8727319
database_cross_reference: RESID:AA0252
database_cross_reference: Unimod:416

Axiom
annotated source: dipyrrolylmethanemethyl-L-cysteine
annotated property: has_exact_synonym
annotated target: (2S)-3-[5-[4-(2-carboxy)ethyl-3-carboxymethyl-1-pyrrol-2-yl]methyl-4-(2-carboxy)ethyl-3-carboxymethyl-1-pyrrol-2-yl]methylthio-2-aminopropanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: dipyrrolylmethanemethyl-L-cysteine
annotated property: has_exact_synonym
annotated target: 3-[5-(3-acetic acid-4-propanoic acid-1-pyrrol-2-yl)methyl-3-acetic acid-4-propanoic acid-1-pyrrol-2-yl]methylthio-2-aminopropanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: dipyrrolylmethanemethyl-L-cysteine
annotated property: has_exact_synonym
annotated target: MOD_RES S-(dipyrrolylmethanemethyl)cysteine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: dipyrrolylmethanemethyl-L-cysteine
annotated property: has_exact_synonym
annotated target: dipyrrole cofactor
has_synonym_type: Alternate name from RESID

Axiom
annotated source: dipyrrolylmethanemethyl-L-cysteine
annotated property: has_exact_synonym
annotated target: dipyrrolylmethanemethyl-L-cysteine
has_synonym_type: Name from RESID

Axiom
annotated source: dipyrrolylmethanemethyl-L-cysteine
annotated property: has_exact_synonym
annotated target: dipyrrolylmethyl-L-cysteine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: dipyrrolylmethanemethyl-L-cysteine
annotated property: has_exact_synonym
annotated target: dipyrromethane cofactor
has_synonym_type: Alternate name from RESID

Axiom
annotated source: dipyrrolylmethanemethyl-L-cysteine
annotated property: has_exact_synonym
annotated target: pyrromethane cofactor
has_synonym_type: Alternate name from RESID

Axiom
annotated source: dipyrrolylmethanemethyl-L-cysteine
annotated property: has_related_synonym
annotated target: Dipyrrolylmethanemethyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: dipyrrolylmethanemethyl-L-cysteine
annotated property: has_related_synonym
annotated target: dipyrrolylmethanemethyl
has_synonym_type: Description (full_name) from Unimod

S-(2-aminovinyl)-3-methyl-D-cysteine
type: Class
subclass of: MOD_00687
subclass of: MOD_02056
definition: A protein modification that effectively cross-links an L-cysteine residue and an L-threonine residue by a thioether bond to form S-(2-aminovinyl)-3-methyl-D-cysteine.
diff avg: -64.04
diff formula: C -1 H -4 N 0 O -3 S 0
diff mono: -64.016045
formula: C 6 H 9 N 2 O 1 S 1
mass avg: 157.21
mass mono: 157.04356
origin: C, T
source: natural
term spec: C-term
database_cross_reference: uniprot.ptm:PTM-0267
has_exact_synonym: (2S,3S)-2-amino-3-[((Z)-2-aminoethenyl)sulfanyl]butanoic acid
has_exact_synonym: 2-amino-3-[(2-aminovinyl)sulfanyl]butanoic acid
has_exact_synonym: CROSSLNK S-(2-aminovinyl)-3-methyl-D-cysteine (Thr-Cys)
has_exact_synonym: S-(2-aminovinyl)-3-methyl-D-cysteine
has_exact_synonym: decarboxylated methyllanthionine
has_obo_namespace: PSI-MOD
id: MOD:00258
comment: Cross-link 2.

Axiom
annotated source: S-(2-aminovinyl)-3-methyl-D-cysteine
annotated property: definition
annotated target: A protein modification that effectively cross-links an L-cysteine residue and an L-threonine residue by a thioether bond to form S-(2-aminovinyl)-3-methyl-D-cysteine.
database_cross_reference: PubMed:9119018
database_cross_reference: RESID:AA0253

Axiom
annotated source: S-(2-aminovinyl)-3-methyl-D-cysteine
annotated property: has_exact_synonym
annotated target: (2S,3S)-2-amino-3-[((Z)-2-aminoethenyl)sulfanyl]butanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: S-(2-aminovinyl)-3-methyl-D-cysteine
annotated property: has_exact_synonym
annotated target: 2-amino-3-[(2-aminovinyl)sulfanyl]butanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-(2-aminovinyl)-3-methyl-D-cysteine
annotated property: has_exact_synonym
annotated target: CROSSLNK S-(2-aminovinyl)-3-methyl-D-cysteine (Thr-Cys)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: S-(2-aminovinyl)-3-methyl-D-cysteine
annotated property: has_exact_synonym
annotated target: S-(2-aminovinyl)-3-methyl-D-cysteine
has_synonym_type: Name from RESID

Axiom
annotated source: S-(2-aminovinyl)-3-methyl-D-cysteine
annotated property: has_exact_synonym
annotated target: decarboxylated methyllanthionine
has_synonym_type: Alternate name from RESID

O4'-(phospho-5'-DNA)-L-tyrosine
type: Class
subclass of: MOD_00750
subclass of: MOD_00919
definition: A protein modification that effectively crosslinks an L-tyrosine residue and the 5'-end of DNA through a phosphodiester bond to form O4'-(phospho-5'-DNA)-L-tyrosine.
origin: Y
source: natural
database_cross_reference: uniprot.ptm:PTM-0228
has_exact_synonym: (S)-2-amino-3-[4-(5'-deoxyribonucleic acid phosphonoxy)phenyl]propanoic acid
has_exact_synonym: ACT_SITE O-(5'-phospho-DNA)-tyrosine intermediate
has_exact_synonym: MOD_RES O-(5'-phospho-DNA)-tyrosine
has_exact_synonym: O4'-(phospho-5'-DNA)-L-tyrosine
has_exact_synonym: O4'-L-tyrosine 5'-DNA phosphodiester
has_obo_namespace: PSI-MOD
id: MOD:00259

Axiom
annotated source: O4'-(phospho-5'-DNA)-L-tyrosine
annotated property: definition
annotated target: A protein modification that effectively crosslinks an L-tyrosine residue and the 5'-end of DNA through a phosphodiester bond to form O4'-(phospho-5'-DNA)-L-tyrosine.
database_cross_reference: PubMed:1861973
database_cross_reference: PubMed:2940511
database_cross_reference: PubMed:3684578
database_cross_reference: RESID:AA0254

Axiom
annotated source: O4'-(phospho-5'-DNA)-L-tyrosine
annotated property: has_exact_synonym
annotated target: (S)-2-amino-3-[4-(5'-deoxyribonucleic acid phosphonoxy)phenyl]propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: O4'-(phospho-5'-DNA)-L-tyrosine
annotated property: has_exact_synonym
annotated target: ACT_SITE O-(5'-phospho-DNA)-tyrosine intermediate
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: O4'-(phospho-5'-DNA)-L-tyrosine
annotated property: has_exact_synonym
annotated target: MOD_RES O-(5'-phospho-DNA)-tyrosine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: O4'-(phospho-5'-DNA)-L-tyrosine
annotated property: has_exact_synonym
annotated target: O4'-(phospho-5'-DNA)-L-tyrosine
has_synonym_type: Name from RESID

Axiom
annotated source: O4'-(phospho-5'-DNA)-L-tyrosine
annotated property: has_exact_synonym
annotated target: O4'-L-tyrosine 5'-DNA phosphodiester
has_synonym_type: Alternate name from RESID

O-(phospho-5'-DNA)-L-threonine
type: Class
subclass of: MOD_00750
subclass of: MOD_00917
definition: A protein modification that effectively crosslinks an L-threonine residue and the 5'-end of DNA through a phosphodiester bond to form O-(phospho-5'-DNA)-L-threonine.
diff avg: 78.97
diff formula: C 0 H 0 N 0 O 3 P 1
diff mono: 78.9585
formula: C 4 H 7 N 1 O 5 P 1
mass avg: 180.08
mass mono: 180.00618
origin: T
source: natural
has_exact_synonym: (S)-2-amino-3-(5'-deoxyribonucleic acid phosphonoxy)butanoic acid
has_exact_synonym: O-(phospho-5'-DNA)-L-threonine
has_exact_synonym: O3-(phospho-5'-DNA)-L-threonine
has_exact_synonym: O3-L-threonine 5'-DNA phosphodiester
has_obo_namespace: PSI-MOD
id: MOD:00260

Axiom
annotated source: O-(phospho-5'-DNA)-L-threonine
annotated property: definition
annotated target: A protein modification that effectively crosslinks an L-threonine residue and the 5'-end of DNA through a phosphodiester bond to form O-(phospho-5'-DNA)-L-threonine.
database_cross_reference: PubMed:3081736
database_cross_reference: RESID:AA0255

Axiom
annotated source: O-(phospho-5'-DNA)-L-threonine
annotated property: has_exact_synonym
annotated target: (S)-2-amino-3-(5'-deoxyribonucleic acid phosphonoxy)butanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: O-(phospho-5'-DNA)-L-threonine
annotated property: has_exact_synonym
annotated target: O-(phospho-5'-DNA)-L-threonine
has_synonym_type: Name from RESID

Axiom
annotated source: O-(phospho-5'-DNA)-L-threonine
annotated property: has_exact_synonym
annotated target: O3-(phospho-5'-DNA)-L-threonine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-(phospho-5'-DNA)-L-threonine
annotated property: has_exact_synonym
annotated target: O3-L-threonine 5'-DNA phosphodiester
has_synonym_type: Alternate name from RESID

O4'-(phospho-5'-uridine)-L-tyrosine
type: Class
subclass of: MOD_00919
subclass of: MOD_01166
definition: A protein modification that effectively crosslinks an L-tyrosine residue and 5'-phosphouridine through a phosphodiester bond to form O4'-(phospho-5'-uridine)-L-tyrosine.
diff avg: 306.17
diff formula: C 9 H 11 N 2 O 8 P 1
diff mono: 306.0253
formula: C 18 H 20 N 3 O 10 P 1
mass avg: 469.34
mass mono: 469.08862
origin: Y
source: natural
database_cross_reference: Unimod:417
database_cross_reference: uniprot.ptm:PTM-0333
has_exact_synonym: (S)-2-amino-3-[4-(5'-uridine phosphonoxy)phenyl]propanoic acid
has_exact_synonym: 5'-uridylic-O-tyrosine
has_exact_synonym: MOD_RES O-UMP-tyrosine
has_exact_synonym: O-Uridinylylation (of Tyrosine)
has_exact_synonym: O4'-(phospho-5'-uridine)-L-tyrosine
has_exact_synonym: O4'-L-tyrosine 5'-uridine phosphodiester
has_exact_synonym: OUMPTyr
has_exact_synonym: hydrogen 5'-uridylate tyrosine ester
has_obo_namespace: PSI-MOD
has_related_synonym: PhosphoUridine
has_related_synonym: uridine phosphodiester
id: MOD:00261
in_subset: PSI-MOD-slim
comment: From DeltaMass: Average Mass: 306.

Axiom
annotated source: O4'-(phospho-5'-uridine)-L-tyrosine
annotated property: definition
annotated target: A protein modification that effectively crosslinks an L-tyrosine residue and 5'-phosphouridine through a phosphodiester bond to form O4'-(phospho-5'-uridine)-L-tyrosine.
database_cross_reference: DeltaMass:0
database_cross_reference: PubMed:11467524
database_cross_reference: PubMed:2885322
database_cross_reference: RESID:AA0256
database_cross_reference: Unimod:417#Y

Axiom
annotated source: O4'-(phospho-5'-uridine)-L-tyrosine
annotated property: has_exact_synonym
annotated target: (S)-2-amino-3-[4-(5'-uridine phosphonoxy)phenyl]propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: O4'-(phospho-5'-uridine)-L-tyrosine
annotated property: has_exact_synonym
annotated target: 5'-uridylic-O-tyrosine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O4'-(phospho-5'-uridine)-L-tyrosine
annotated property: has_exact_synonym
annotated target: MOD_RES O-UMP-tyrosine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: O4'-(phospho-5'-uridine)-L-tyrosine
annotated property: has_exact_synonym
annotated target: O-Uridinylylation (of Tyrosine)
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: O4'-(phospho-5'-uridine)-L-tyrosine
annotated property: has_exact_synonym
annotated target: O4'-(phospho-5'-uridine)-L-tyrosine
has_synonym_type: Name from RESID

Axiom
annotated source: O4'-(phospho-5'-uridine)-L-tyrosine
annotated property: has_exact_synonym
annotated target: O4'-L-tyrosine 5'-uridine phosphodiester
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O4'-(phospho-5'-uridine)-L-tyrosine
annotated property: has_exact_synonym
annotated target: OUMPTyr
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: O4'-(phospho-5'-uridine)-L-tyrosine
annotated property: has_exact_synonym
annotated target: hydrogen 5'-uridylate tyrosine ester
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O4'-(phospho-5'-uridine)-L-tyrosine
annotated property: has_related_synonym
annotated target: PhosphoUridine
has_synonym_type: Agreed label from MS community

Axiom
annotated source: O4'-(phospho-5'-uridine)-L-tyrosine
annotated property: has_related_synonym
annotated target: uridine phosphodiester
has_synonym_type: Description (full_name) from Unimod

N-(L-glutamyl)-L-tyrosine
type: Class
subclass of: MOD_00919
subclass of: MOD_02045
definition: A protein modification that effectively forms a peptide bond between a C-terminal L-glutamic acid residue and a free L-tyrosine.
diff avg: -17.01
diff formula: C 0 H -1 N 0 O -1
diff mono: -17.00274
formula: C 14 H 16 N 2 O 5
mass avg: 292.29
mass mono: 292.10593
origin: E, Y
source: natural
term spec: C-term
has_exact_synonym: (S,S)-2-(2-aminopentanedio-1-yl)amino-3-(4-hydoxyphenyl)propanoic acid
has_exact_synonym: L-glutamyl L-tyrosine
has_exact_synonym: N-(L-glutamyl)-L-tyrosine
has_exact_synonym: SITE Involved in polymerization
has_obo_namespace: PSI-MOD
id: MOD:00262
comment: Cross-link 2.

Axiom
annotated source: N-(L-glutamyl)-L-tyrosine
annotated property: definition
annotated target: A protein modification that effectively forms a peptide bond between a C-terminal L-glutamic acid residue and a free L-tyrosine.
database_cross_reference: ChEBI:21477
database_cross_reference: PubMed:6387372
database_cross_reference: PubMed:8093886
database_cross_reference: RESID:AA0257

Axiom
annotated source: N-(L-glutamyl)-L-tyrosine
annotated property: has_exact_synonym
annotated target: (S,S)-2-(2-aminopentanedio-1-yl)amino-3-(4-hydoxyphenyl)propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N-(L-glutamyl)-L-tyrosine
annotated property: has_exact_synonym
annotated target: L-glutamyl L-tyrosine
has_synonym_type: Name from RESID

Axiom
annotated source: N-(L-glutamyl)-L-tyrosine
annotated property: has_exact_synonym
annotated target: N-(L-glutamyl)-L-tyrosine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-(L-glutamyl)-L-tyrosine
annotated property: has_exact_synonym
annotated target: SITE Involved in polymerization
has_synonym_type: Protein feature description from UniProtKB

S-phycoviolobilin-L-cysteine
type: Class
subclass of: MOD_00700
subclass of: MOD_00905
definition: A protein modification that effectively results from forming an adduct between a cysteine residue and the tetrapyrrole compound phycoviolobilin.
diff avg: 586.69
diff formula: C 33 H 38 N 4 O 6 S 0
diff mono: 586.2791
formula: C 36 H 43 N 5 O 7 S 1
mass avg: 689.83
mass mono: 689.2883
origin: C
source: natural
database_cross_reference: Unimod:387
has_exact_synonym: (4S)-3-[(1R)-1-(((2R)-2-amino-2-carboxy)ethylsulfanyl)ethyl]-8,12-bis(2-carboxyethyl)-18-ethyl-4,5-dihydro-2,7,13,17-tetramethyl-(21H,22H,24H)-biladiene-bc-1,19-dione
has_exact_synonym: BINDING Phycoviolobilin chromophore (covalent; via 1 link)
has_exact_synonym: PBV
has_exact_synonym: PVB
has_exact_synonym: PXB
has_exact_synonym: S-phycobiliviolin-L-cysteine
has_exact_synonym: S-phycoviolobilin-L-cysteine
has_exact_synonym: cryptobiliviolin
has_exact_synonym: cryptoviolin
has_exact_synonym: cryptoviolobilin
has_obo_namespace: PSI-MOD
has_related_synonym: Phycocyanobilin
has_related_synonym: phycocyanobilin
id: MOD:00263

Axiom
annotated source: S-phycoviolobilin-L-cysteine
annotated property: definition
annotated target: A protein modification that effectively results from forming an adduct between a cysteine residue and the tetrapyrrole compound phycoviolobilin.
database_cross_reference: PubMed:2106585
database_cross_reference: PubMed:3208761
database_cross_reference: RESID:AA0258
database_cross_reference: Unimod:387

Axiom
annotated source: S-phycoviolobilin-L-cysteine
annotated property: has_exact_synonym
annotated target: (4S)-3-[(1R)-1-(((2R)-2-amino-2-carboxy)ethylsulfanyl)ethyl]-8,12-bis(2-carboxyethyl)-18-ethyl-4,5-dihydro-2,7,13,17-tetramethyl-(21H,22H,24H)-biladiene-bc-1,19-dione
has_synonym_type: Systematic name from RESID

Axiom
annotated source: S-phycoviolobilin-L-cysteine
annotated property: has_exact_synonym
annotated target: BINDING Phycoviolobilin chromophore (covalent; via 1 link)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: S-phycoviolobilin-L-cysteine
annotated property: has_exact_synonym
annotated target: PBV
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-phycoviolobilin-L-cysteine
annotated property: has_exact_synonym
annotated target: PVB
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-phycoviolobilin-L-cysteine
annotated property: has_exact_synonym
annotated target: PXB
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-phycoviolobilin-L-cysteine
annotated property: has_exact_synonym
annotated target: S-phycobiliviolin-L-cysteine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-phycoviolobilin-L-cysteine
annotated property: has_exact_synonym
annotated target: S-phycoviolobilin-L-cysteine
has_synonym_type: Name from RESID

Axiom
annotated source: S-phycoviolobilin-L-cysteine
annotated property: has_exact_synonym
annotated target: cryptobiliviolin
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-phycoviolobilin-L-cysteine
annotated property: has_exact_synonym
annotated target: cryptoviolin
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-phycoviolobilin-L-cysteine
annotated property: has_exact_synonym
annotated target: cryptoviolobilin
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-phycoviolobilin-L-cysteine
annotated property: has_related_synonym
annotated target: Phycocyanobilin
has_synonym_type: Agreed label from MS community

Axiom
annotated source: S-phycoviolobilin-L-cysteine
annotated property: has_related_synonym
annotated target: phycocyanobilin
has_synonym_type: Description (full_name) from Unimod

phycoerythrobilin-bis-L-cysteine
type: Class
subclass of: MOD_00700
subclass of: MOD_02044
definition: A protein modification that effectively results from forming an adduct between two cysteine residues and the tetrapyrrole compound phycoerythrobilin.
diff avg: 586.69
diff formula: C 33 H 38 N 4 O 6 S 0
diff mono: 586.2791
formula: C 39 H 48 N 6 O 8 S 2
mass avg: 792.97
mass mono: 792.2975
origin: C, C
source: natural
has_exact_synonym: (2S,3R,16R)-3,18-bis-[(R)-1-(((2R)-2-amino-2-carboxy)ethylsulfanyl)ethyl]-8,12-bis(2-carboxyethyl)-2,7,13,17-tetramethyl-2,3,15,16-tetrahydrobilin-1,19(21H,22H,24H)-dione
has_exact_synonym: 3,18-bis-[1-((2-amino-2-carboxy)ethylsulfanyl)ethyl]-2,3,15,16-tetrahydro-2,7,13,17-tetramethyl-1,19-dioxo-(21H,22H,24H)-biladiene-ab-8,12-dipropanoic acid
has_exact_synonym: BINDING Phycoerythrobilin chromophore (covalent; via 2 links)
has_exact_synonym: PEB
has_exact_synonym: phycoerythrobilin biscysteine adduct
has_exact_synonym: phycoerythrobilin-bis-L-cysteine
has_obo_namespace: PSI-MOD
id: MOD:00264
comment: Cross-link 2.

Axiom
annotated source: phycoerythrobilin-bis-L-cysteine
annotated property: definition
annotated target: A protein modification that effectively results from forming an adduct between two cysteine residues and the tetrapyrrole compound phycoerythrobilin.
database_cross_reference: PubMed:3208761
database_cross_reference: PubMed:3838747
database_cross_reference: RESID:AA0259

Axiom
annotated source: phycoerythrobilin-bis-L-cysteine
annotated property: has_exact_synonym
annotated target: (2S,3R,16R)-3,18-bis-[(R)-1-(((2R)-2-amino-2-carboxy)ethylsulfanyl)ethyl]-8,12-bis(2-carboxyethyl)-2,7,13,17-tetramethyl-2,3,15,16-tetrahydrobilin-1,19(21H,22H,24H)-dione
has_synonym_type: Systematic name from RESID

Axiom
annotated source: phycoerythrobilin-bis-L-cysteine
annotated property: has_exact_synonym
annotated target: 3,18-bis-[1-((2-amino-2-carboxy)ethylsulfanyl)ethyl]-2,3,15,16-tetrahydro-2,7,13,17-tetramethyl-1,19-dioxo-(21H,22H,24H)-biladiene-ab-8,12-dipropanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: phycoerythrobilin-bis-L-cysteine
annotated property: has_exact_synonym
annotated target: BINDING Phycoerythrobilin chromophore (covalent; via 2 links)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: phycoerythrobilin-bis-L-cysteine
annotated property: has_exact_synonym
annotated target: PEB
has_synonym_type: Alternate name from RESID

Axiom
annotated source: phycoerythrobilin-bis-L-cysteine
annotated property: has_exact_synonym
annotated target: phycoerythrobilin biscysteine adduct
has_synonym_type: Alternate name from RESID

Axiom
annotated source: phycoerythrobilin-bis-L-cysteine
annotated property: has_exact_synonym
annotated target: phycoerythrobilin-bis-L-cysteine
has_synonym_type: Name from RESID

phycourobilin-bis-L-cysteine
type: Class
subclass of: MOD_00700
subclass of: MOD_02044
definition: A protein modification that effectively results from forming an adduct between two cysteine residues and the tetrapyrrole compound phycourobilin.
diff avg: 586.69
diff formula: C 33 H 38 N 4 O 6 S 0
diff mono: 586.2791
formula: C 39 H 48 N 6 O 8 S 2
mass avg: 792.97
mass mono: 792.2975
origin: C, C
source: natural
has_exact_synonym: 3,18-bis(1-[(R)-2-amino-2-carboxyethyl]sulfanylethyl)-2,7,13,17-tetramethyl-1,19-dioxo-4,5,15,16-tetrahydro-(21H,22H,24H)-bilene-b-8,12-dipropanoic acid
has_exact_synonym: 3,18-bis(1-[(R)-2-amino-2-carboxyethyl]sulfanylethyl)-8,12-bis(2-carboxyethyl)-2,7,13,17-tetramethyl-4,5,15,16-tetrahydro-(21H,22H,24H)-bilene-b-1,19(4H,16H)-dione
has_exact_synonym: BINDING Phycourobilin chromophore (covalent; via 2 links)
has_exact_synonym: PUB
has_exact_synonym: phycourobilin biscysteine adduct
has_exact_synonym: phycourobilin-bis-L-cysteine
has_obo_namespace: PSI-MOD
id: MOD:00265
comment: Cross-link 2.

Axiom
annotated source: phycourobilin-bis-L-cysteine
annotated property: definition
annotated target: A protein modification that effectively results from forming an adduct between two cysteine residues and the tetrapyrrole compound phycourobilin.
database_cross_reference: PubMed:3208761
database_cross_reference: PubMed:3838665
database_cross_reference: PubMed:3838747
database_cross_reference: PubMed:8876649
database_cross_reference: RESID:AA0260

Axiom
annotated source: phycourobilin-bis-L-cysteine
annotated property: has_exact_synonym
annotated target: 3,18-bis(1-[(R)-2-amino-2-carboxyethyl]sulfanylethyl)-2,7,13,17-tetramethyl-1,19-dioxo-4,5,15,16-tetrahydro-(21H,22H,24H)-bilene-b-8,12-dipropanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: phycourobilin-bis-L-cysteine
annotated property: has_exact_synonym
annotated target: 3,18-bis(1-[(R)-2-amino-2-carboxyethyl]sulfanylethyl)-8,12-bis(2-carboxyethyl)-2,7,13,17-tetramethyl-4,5,15,16-tetrahydro-(21H,22H,24H)-bilene-b-1,19(4H,16H)-dione
has_synonym_type: Systematic name from RESID

Axiom
annotated source: phycourobilin-bis-L-cysteine
annotated property: has_exact_synonym
annotated target: BINDING Phycourobilin chromophore (covalent; via 2 links)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: phycourobilin-bis-L-cysteine
annotated property: has_exact_synonym
annotated target: PUB
has_synonym_type: Alternate name from RESID

Axiom
annotated source: phycourobilin-bis-L-cysteine
annotated property: has_exact_synonym
annotated target: phycourobilin biscysteine adduct
has_synonym_type: Alternate name from RESID

Axiom
annotated source: phycourobilin-bis-L-cysteine
annotated property: has_exact_synonym
annotated target: phycourobilin-bis-L-cysteine
has_synonym_type: Name from RESID

N-L-glutamyl-poly-L-glutamic acid
type: Class
subclass of: MOD_00906
definition: A protein modification that effectively forms a peptide bond between a C-terminal L-glutamic acid residue and one or more free L-glutamic acid molecules to form N-(L-glutamyl)-poly-L-glutamic acid.
origin: E
source: natural
term spec: C-term
has_obo_namespace: PSI-MOD
id: MOD:00266

Axiom
annotated source: N-L-glutamyl-poly-L-glutamic acid
annotated property: definition
annotated target: A protein modification that effectively forms a peptide bond between a C-terminal L-glutamic acid residue and one or more free L-glutamic acid molecules to form N-(L-glutamyl)-poly-L-glutamic acid.
database_cross_reference: PubMed:2570347
database_cross_reference: PubMed:328274
database_cross_reference: RESID:AA0261

L-cysteine sulfinic acid
type: Class
subclass of: MOD_00708
subclass of: MOD_01855
definition: A protein modification that effectively dioxygenates an L-cysteine residue to L-cysteine sulfinic acid.
diff avg: 32.0
diff formula: C 0 H 0 N 0 O 2 S 0
diff mono: 31.989828
formula: C 3 H 5 N 1 O 3 S 1
mass avg: 135.14
mass mono: 134.99901
origin: C
source: natural
database_cross_reference: Unimod:425
database_cross_reference: uniprot.ptm:PTM-0108
has_exact_synonym: (2R)-2-amino-3-sulfinopropanoic acid
has_exact_synonym: 2-amino-2-carboxyethanesulfinic acid
has_exact_synonym: 2-amino-3-(dioxido-lambda(6)-sulfanyl)propanoic acid [tautomer]
has_exact_synonym: 2-amino-3-sulfonylpropanoic acid [tautomer]
has_exact_synonym: 3-sulfinoalanine
has_exact_synonym: 3-sulphinoalanine
has_exact_synonym: CysO2H
has_exact_synonym: L-cysteine sulfinic acid
has_exact_synonym: MOD_RES Cysteine sulfinic acid (-SO2H)
has_exact_synonym: S-cysteinesulfinic acid
has_exact_synonym: S-sulfinocysteine
has_exact_synonym: cysteine sulphinic acid
has_exact_synonym: cysteine-S,S-dioxide [tautomer]
has_exact_synonym: sulfinicacid
has_obo_namespace: PSI-MOD
has_related_synonym: Dioxidation
has_related_synonym: dihydroxy
id: MOD:00267
in_subset: PSI-MOD-slim
comment: "Hyun Ae Woo, et. al., Science 300 (5619), 653-656"

Axiom
annotated source: L-cysteine sulfinic acid
annotated property: definition
annotated target: A protein modification that effectively dioxygenates an L-cysteine residue to L-cysteine sulfinic acid.
database_cross_reference: ChEBI:16345
database_cross_reference: OMSSA:162
database_cross_reference: PubMed:12686488
database_cross_reference: PubMed:9252331
database_cross_reference: PubMed:9586994
database_cross_reference: RESID:AA0262
database_cross_reference: Unimod:425#C

Axiom
annotated source: L-cysteine sulfinic acid
annotated property: has_exact_synonym
annotated target: (2R)-2-amino-3-sulfinopropanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-cysteine sulfinic acid
annotated property: has_exact_synonym
annotated target: 2-amino-2-carboxyethanesulfinic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteine sulfinic acid
annotated property: has_exact_synonym
annotated target: 2-amino-3-(dioxido-lambda(6)-sulfanyl)propanoic acid [tautomer]
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteine sulfinic acid
annotated property: has_exact_synonym
annotated target: 2-amino-3-sulfonylpropanoic acid [tautomer]
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteine sulfinic acid
annotated property: has_exact_synonym
annotated target: 3-sulfinoalanine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteine sulfinic acid
annotated property: has_exact_synonym
annotated target: 3-sulphinoalanine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteine sulfinic acid
annotated property: has_exact_synonym
annotated target: CysO2H
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-cysteine sulfinic acid
annotated property: has_exact_synonym
annotated target: L-cysteine sulfinic acid
has_synonym_type: Name from RESID

Axiom
annotated source: L-cysteine sulfinic acid
annotated property: has_exact_synonym
annotated target: MOD_RES Cysteine sulfinic acid (-SO2H)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-cysteine sulfinic acid
annotated property: has_exact_synonym
annotated target: S-cysteinesulfinic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteine sulfinic acid
annotated property: has_exact_synonym
annotated target: S-sulfinocysteine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteine sulfinic acid
annotated property: has_exact_synonym
annotated target: cysteine sulphinic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteine sulfinic acid
annotated property: has_exact_synonym
annotated target: cysteine-S,S-dioxide [tautomer]
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteine sulfinic acid
annotated property: has_exact_synonym
annotated target: sulfinicacid
has_synonym_type: Short label from OMSSA

Axiom
annotated source: L-cysteine sulfinic acid
annotated property: has_related_synonym
annotated target: Dioxidation
has_synonym_type: Agreed label from MS community

Axiom
annotated source: L-cysteine sulfinic acid
annotated property: has_related_synonym
annotated target: dihydroxy
has_synonym_type: Description (full_name) from Unimod

L-3',4',5'-trihydroxyphenylalanine
type: Class
subclass of: dihydroxylated residue
subclass of: MOD_00707
definition: A protein modification that effectively converts an L-tyrosine residue to L-3',4',5'-trihydroxyphenylalanine.
diff avg: 32.0
diff formula: C 0 H 0 N 0 O 2
diff mono: 31.989828
formula: C 9 H 9 N 1 O 4
mass avg: 195.17
mass mono: 195.05316
origin: Y
source: natural
database_cross_reference: Unimod:425
database_cross_reference: uniprot.ptm:PTM-0667
has_exact_synonym: (S)-2-amino-3-(3,4,5-trihydroxyphenyl)propanoic acid
has_exact_synonym: 3,4,6-Trihydroxy-Phenylalanine (from Tyrosine) (TOPA)
has_exact_synonym: 35Hy2Tyr
has_exact_synonym: L-3',4',5'-trihydroxyphenylalanine
has_exact_synonym: L-3,4,5-TOPA
has_exact_synonym: MOD_RES 3',4',5'-trihydroxyphenylalanine
has_obo_namespace: PSI-MOD
has_related_synonym: Dioxidation
has_related_synonym: dihydroxy
id: MOD:00268
comment: From DeltaMass: Average Mass: 32

Axiom
annotated source: L-3',4',5'-trihydroxyphenylalanine
annotated property: definition
annotated target: A protein modification that effectively converts an L-tyrosine residue to L-3',4',5'-trihydroxyphenylalanine.
database_cross_reference: ChEBI:141811
database_cross_reference: DeltaMass:0
database_cross_reference: PubMed:12686488
database_cross_reference: PubMed:12771378
database_cross_reference: PubMed:8554314
database_cross_reference: PubMed:9252331
database_cross_reference: PubMed:9434739
database_cross_reference: RESID:AA0263
database_cross_reference: Unimod:425#Y

Axiom
annotated source: L-3',4',5'-trihydroxyphenylalanine
annotated property: has_exact_synonym
annotated target: (S)-2-amino-3-(3,4,5-trihydroxyphenyl)propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-3',4',5'-trihydroxyphenylalanine
annotated property: has_exact_synonym
annotated target: 3,4,6-Trihydroxy-Phenylalanine (from Tyrosine) (TOPA)
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: L-3',4',5'-trihydroxyphenylalanine
annotated property: has_exact_synonym
annotated target: 35Hy2Tyr
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-3',4',5'-trihydroxyphenylalanine
annotated property: has_exact_synonym
annotated target: L-3',4',5'-trihydroxyphenylalanine
has_synonym_type: Name from RESID

Axiom
annotated source: L-3',4',5'-trihydroxyphenylalanine
annotated property: has_exact_synonym
annotated target: L-3,4,5-TOPA
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-3',4',5'-trihydroxyphenylalanine
annotated property: has_exact_synonym
annotated target: MOD_RES 3',4',5'-trihydroxyphenylalanine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-3',4',5'-trihydroxyphenylalanine
annotated property: has_related_synonym
annotated target: Dioxidation
has_synonym_type: Agreed label from MS community

Axiom
annotated source: L-3',4',5'-trihydroxyphenylalanine
annotated property: has_related_synonym
annotated target: dihydroxy
has_synonym_type: Description (full_name) from Unimod

O-(sn-1-glycerophosphoryl)-L-serine
type: Class
subclass of: MOD_00916
definition: A protein modification that effectively converts an L-serine residue to O-(sn-1-glycerophosphoryl)-L-serine.
diff avg: 154.06
diff formula: C 3 H 7 N 0 O 5 P 1
diff mono: 154.00311
formula: C 6 H 12 N 1 O 7 P 1
mass avg: 241.14
mass mono: 241.03514
origin: S
source: natural
database_cross_reference: Unimod:419
database_cross_reference: uniprot.ptm:PTM-0230
has_exact_synonym: (2S)-2-amino-3-[(2Xi)-2,3-dihydroxypropyl]phosphonoxypropanoic acid
has_exact_synonym: MOD_RES O-(sn-1-glycerophosphoryl)serine
has_exact_synonym: O-(sn-1-glycerophosphoryl)-L-serine
has_exact_synonym: O3-(sn-1-glycerophosphoryl)-L-serine
has_exact_synonym: O3-2,3-dihydroxypropyl hydrogen phosphate-L-serine ester
has_exact_synonym: O3-L-serine glyceryl-1-phosphodiester
has_exact_synonym: alpha-glycerophosphoryl serine
has_exact_synonym: glycerophosphoserine
has_obo_namespace: PSI-MOD
has_related_synonym: Glycerophospho
has_related_synonym: glycerophospho
id: MOD:00269
in_subset: PSI-MOD-slim

Axiom
annotated source: O-(sn-1-glycerophosphoryl)-L-serine
annotated property: definition
annotated target: A protein modification that effectively converts an L-serine residue to O-(sn-1-glycerophosphoryl)-L-serine.
database_cross_reference: PubMed:8645220
database_cross_reference: RESID:AA0264
database_cross_reference: Unimod:419#S

Axiom
annotated source: O-(sn-1-glycerophosphoryl)-L-serine
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-3-[(2Xi)-2,3-dihydroxypropyl]phosphonoxypropanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: O-(sn-1-glycerophosphoryl)-L-serine
annotated property: has_exact_synonym
annotated target: MOD_RES O-(sn-1-glycerophosphoryl)serine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: O-(sn-1-glycerophosphoryl)-L-serine
annotated property: has_exact_synonym
annotated target: O-(sn-1-glycerophosphoryl)-L-serine
has_synonym_type: Name from RESID

Axiom
annotated source: O-(sn-1-glycerophosphoryl)-L-serine
annotated property: has_exact_synonym
annotated target: O3-(sn-1-glycerophosphoryl)-L-serine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-(sn-1-glycerophosphoryl)-L-serine
annotated property: has_exact_synonym
annotated target: O3-2,3-dihydroxypropyl hydrogen phosphate-L-serine ester
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-(sn-1-glycerophosphoryl)-L-serine
annotated property: has_exact_synonym
annotated target: O3-L-serine glyceryl-1-phosphodiester
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-(sn-1-glycerophosphoryl)-L-serine
annotated property: has_exact_synonym
annotated target: alpha-glycerophosphoryl serine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-(sn-1-glycerophosphoryl)-L-serine
annotated property: has_exact_synonym
annotated target: glycerophosphoserine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-(sn-1-glycerophosphoryl)-L-serine
annotated property: has_related_synonym
annotated target: Glycerophospho
has_synonym_type: Agreed label from MS community

Axiom
annotated source: O-(sn-1-glycerophosphoryl)-L-serine
annotated property: has_related_synonym
annotated target: glycerophospho
has_synonym_type: Description (full_name) from Unimod

1-thioglycine (internal)
type: Class
subclass of: MOD_01625
definition: A protein modification that effectively converts a glycine residue to an internal 1-thioglycine.
diff avg: 16.06
diff formula: C 0 H 0 N 0 O -1 S 1
diff mono: 15.977156
formula: C 2 H 3 N 1 S 1
mass avg: 73.11
mass mono: 72.99862
origin: G
source: natural
database_cross_reference: uniprot.ptm:PTM-0004
has_exact_synonym: 1-thioglycine
has_exact_synonym: 2-amino-1-sulfanylethanone
has_exact_synonym: MOD_RES 1-thioglycine
has_exact_synonym: S(O)Gly
has_exact_synonym: aminoethanethioic O-acid
has_exact_synonym: aminoethanethioic acid
has_exact_synonym: aminoethanethionic acid
has_exact_synonym: aminothioacetic acid
has_obo_namespace: PSI-MOD
has_related_synonym: Carboxy->Thiocarboxy
has_related_synonym: thiocarboxylic acid
id: MOD:00270
in_subset: PSI-MOD-slim
comment: This modification occurs naturally in two forms. At an interior peptide location it exists as aminoethanethionic acid (or aminoethanethioic O-acid). At the carboxyl-terminal it exists as aminoethanethiolic acid (or aminoethanethioic S-acid).

Axiom
annotated source: 1-thioglycine (internal)
annotated property: definition
annotated target: A protein modification that effectively converts a glycine residue to an internal 1-thioglycine.
database_cross_reference: PubMed:11463785
database_cross_reference: PubMed:9367957
database_cross_reference: RESID:AA0265#INT

Axiom
annotated source: 1-thioglycine (internal)
annotated property: has_exact_synonym
annotated target: 1-thioglycine
has_synonym_type: Name from RESID

Axiom
annotated source: 1-thioglycine (internal)
annotated property: has_exact_synonym
annotated target: 2-amino-1-sulfanylethanone
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 1-thioglycine (internal)
annotated property: has_exact_synonym
annotated target: MOD_RES 1-thioglycine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: 1-thioglycine (internal)
annotated property: has_exact_synonym
annotated target: S(O)Gly
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: 1-thioglycine (internal)
annotated property: has_exact_synonym
annotated target: aminoethanethioic O-acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 1-thioglycine (internal)
annotated property: has_exact_synonym
annotated target: aminoethanethioic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: 1-thioglycine (internal)
annotated property: has_exact_synonym
annotated target: aminoethanethionic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 1-thioglycine (internal)
annotated property: has_exact_synonym
annotated target: aminothioacetic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 1-thioglycine (internal)
annotated property: has_related_synonym
annotated target: Carboxy->Thiocarboxy
has_synonym_type: Agreed label from MS community

Axiom
annotated source: 1-thioglycine (internal)
annotated property: has_related_synonym
annotated target: thiocarboxylic acid
has_synonym_type: Description (full_name) from Unimod

heme P460-bis-L-cysteine-L-tyrosine
type: Class
subclass of: MOD_00699
subclass of: MOD_02067
subclass of: MOD_02075
definition: A protein modification that effectively results from forming an adduct between two cysteine residues, the C-3' of a tyrosine residue, and the porphyrin compound heme b, (7,12-diethenyl-3,8,13,17-tetramethylporphyrin-2,18-dipropanoato)iron.
diff avg: 614.48
diff formula: C 34 Fe 1 H 30 N 4 O 4 S 0
diff mono: 614.1616
formula: C 49 Fe 1 H 49 N 7 O 8 S 2
mass avg: 983.94
mass mono: 983.24335
origin: C, C, Y
source: natural
has_exact_synonym: (10S,11S)-[7,12-bis((S)-1-[((R)-2-amino-2-carboxy)ethylsulfanyl]ethyl)-10-(2-hydroxy-5-[(S)-2-amino-2-carboxy]ethylphenyl)-3,8,13,17-tetramethyl-21H,23H-10,11-dihydroporphine-2,18-bis(2-carboxyethyl)-N21,N22,N23,N24]-ferrate
has_exact_synonym: BINDING Heme (covalent; via 3 links)
has_exact_synonym: bis(S-cysteinyl)-(tyros-3'-yl)-heme
has_exact_synonym: heme P460-bis-L-cysteine-L-tyrosine
has_obo_namespace: PSI-MOD
id: MOD:00271
comment: Cross-link 3.

Axiom
annotated source: heme P460-bis-L-cysteine-L-tyrosine
annotated property: definition
annotated target: A protein modification that effectively results from forming an adduct between two cysteine residues, the C-3' of a tyrosine residue, and the porphyrin compound heme b, (7,12-diethenyl-3,8,13,17-tetramethylporphyrin-2,18-dipropanoato)iron.
database_cross_reference: PubMed:8325841
database_cross_reference: PubMed:9095195
database_cross_reference: RESID:AA0266

Axiom
annotated source: heme P460-bis-L-cysteine-L-tyrosine
annotated property: has_exact_synonym
annotated target: (10S,11S)-[7,12-bis((S)-1-[((R)-2-amino-2-carboxy)ethylsulfanyl]ethyl)-10-(2-hydroxy-5-[(S)-2-amino-2-carboxy]ethylphenyl)-3,8,13,17-tetramethyl-21H,23H-10,11-dihydroporphine-2,18-bis(2-carboxyethyl)-N21,N22,N23,N24]-ferrate
has_synonym_type: Systematic name from RESID

Axiom
annotated source: heme P460-bis-L-cysteine-L-tyrosine
annotated property: has_exact_synonym
annotated target: BINDING Heme (covalent; via 3 links)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: heme P460-bis-L-cysteine-L-tyrosine
annotated property: has_exact_synonym
annotated target: bis(S-cysteinyl)-(tyros-3'-yl)-heme
has_synonym_type: Alternate name from RESID

Axiom
annotated source: heme P460-bis-L-cysteine-L-tyrosine
annotated property: has_exact_synonym
annotated target: heme P460-bis-L-cysteine-L-tyrosine
has_synonym_type: Name from RESID

O-(phospho-5'-adenosine)-L-threonine
type: Class
subclass of: MOD_00917
subclass of: MOD_01165
definition: A protein modification that effectively crosslinks an L-threonine residue and 5'-phosphoadenosine through a phosphodiester bond to form O-(phospho-5'-adenosine)-L-threonine.
diff avg: 329.21
diff formula: C 10 H 12 N 5 O 6 P 1
diff mono: 329.05252
formula: C 14 H 19 N 6 O 8 P 1
mass avg: 430.31
mass mono: 430.1002
origin: T
source: natural
database_cross_reference: Unimod:405
database_cross_reference: uniprot.ptm:PTM-0393
has_exact_synonym: (2S,3R)-2-amino-3-(5'-adenosine phosphonoxy)butanoic acid
has_exact_synonym: 5'-adenylic-O3-L-threonine
has_exact_synonym: ACT_SITE O-AMP-threonine intermediate
has_exact_synonym: L-threonine monoanhydride with 5'-adenylic acid
has_exact_synonym: MOD_RES O-AMP-threonine
has_exact_synonym: O(gamma)-5'-adenylic-L-threonine
has_exact_synonym: O-(phospho-5'-adenosine)-L-threonine
has_exact_synonym: O3-(phospho-5'-adenosine)-L-threonine
has_exact_synonym: O3-L-threonine 5'-adenosine phosphodiester
has_exact_synonym: beta-5'-adenylic-L-threonine
has_obo_namespace: PSI-MOD
has_related_synonym: AMP binding site
has_related_synonym: Phosphoadenosine
id: MOD:00272
in_subset: PSI-MOD-slim

Axiom
annotated source: O-(phospho-5'-adenosine)-L-threonine
annotated property: definition
annotated target: A protein modification that effectively crosslinks an L-threonine residue and 5'-phosphoadenosine through a phosphodiester bond to form O-(phospho-5'-adenosine)-L-threonine.
database_cross_reference: PubMed:2989287
database_cross_reference: PubMed:8917428
database_cross_reference: RESID:AA0267
database_cross_reference: Unimod:405#T

Axiom
annotated source: O-(phospho-5'-adenosine)-L-threonine
annotated property: has_exact_synonym
annotated target: (2S,3R)-2-amino-3-(5'-adenosine phosphonoxy)butanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: O-(phospho-5'-adenosine)-L-threonine
annotated property: has_exact_synonym
annotated target: 5'-adenylic-O3-L-threonine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-(phospho-5'-adenosine)-L-threonine
annotated property: has_exact_synonym
annotated target: ACT_SITE O-AMP-threonine intermediate
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: O-(phospho-5'-adenosine)-L-threonine
annotated property: has_exact_synonym
annotated target: L-threonine monoanhydride with 5'-adenylic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-(phospho-5'-adenosine)-L-threonine
annotated property: has_exact_synonym
annotated target: MOD_RES O-AMP-threonine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: O-(phospho-5'-adenosine)-L-threonine
annotated property: has_exact_synonym
annotated target: O(gamma)-5'-adenylic-L-threonine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-(phospho-5'-adenosine)-L-threonine
annotated property: has_exact_synonym
annotated target: O-(phospho-5'-adenosine)-L-threonine
has_synonym_type: Name from RESID

Axiom
annotated source: O-(phospho-5'-adenosine)-L-threonine
annotated property: has_exact_synonym
annotated target: O3-(phospho-5'-adenosine)-L-threonine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-(phospho-5'-adenosine)-L-threonine
annotated property: has_exact_synonym
annotated target: O3-L-threonine 5'-adenosine phosphodiester
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-(phospho-5'-adenosine)-L-threonine
annotated property: has_exact_synonym
annotated target: beta-5'-adenylic-L-threonine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-(phospho-5'-adenosine)-L-threonine
annotated property: has_related_synonym
annotated target: AMP binding site
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: O-(phospho-5'-adenosine)-L-threonine
annotated property: has_related_synonym
annotated target: Phosphoadenosine
has_synonym_type: Agreed label from MS community

tris-L-cysteinyl L-cysteine persulfido bis-L-glutamato L-histidino tetrairon disulfide trioxide
type: Class
subclass of: MOD_00739
subclass of: MOD_02067
subclass of: MOD_02068
subclass of: MOD_02070
definition: A protein modification that effectively converts four L-cysteine residues, two L-glutamic acid residues, an L-histidine residue and a four-iron three-sulfur three-oxygen cluster to tris-L-cysteinyl L-cysteine persulfido bis-L-glutamato L-histidino tetrairon disulfide trioxide.
diff avg: 360.5
diff formula: C 0 Fe 4 H -7 N 0 O 3 S 3
diff mono: 360.58594
formula: C 28 Fe 4 H 34 N 9 O 14 S 7
mass avg: 1168.43
mass mono: 1167.7667
origin: C, C, C, C, E, E, H
source: natural
has_exact_synonym: 4Fe-2S-3O cluster
has_exact_synonym: METAL Iron-oxo-sulfur (4Fe-2O-2S)
has_exact_synonym: METAL Iron-oxo-sulfur (4Fe-2O-2S); via persulfide group
has_exact_synonym: METAL Iron-oxo-sulfur (4Fe-2O-2S); via tele nitrogen
has_exact_synonym: hybrid four iron cluster 2
has_exact_synonym: mu-1:2kappaO-oxido-mu-1:3kappaO-oxido-mu-2:4kappaO-oxido-mu-3:4kappaS-sulfido-mu3-2:3:4kappaS-sulfido-S-cysteinyl-N1'-histidino-O5-glutamato 1-iron-S5-cysteine persulfido-O5-glutamato 2-iron-3,4-bis-(S-cysteinyl iron)
has_exact_synonym: tris-L-cysteinyl L-cysteine persulfido bis-L-glutamato L-histidino tetrairon disulfide trioxide
has_obo_namespace: PSI-MOD
has_related_synonym: prismane iron-sulfur cofactor
id: MOD:00273
comment: Cross-link 7; secondary to RESID:AA0269.

Axiom
annotated source: tris-L-cysteinyl L-cysteine persulfido bis-L-glutamato L-histidino tetrairon disulfide trioxide
annotated property: definition
annotated target: A protein modification that effectively converts four L-cysteine residues, two L-glutamic acid residues, an L-histidine residue and a four-iron three-sulfur three-oxygen cluster to tris-L-cysteinyl L-cysteine persulfido bis-L-glutamato L-histidino tetrairon disulfide trioxide.
database_cross_reference: PubMed:12764602
database_cross_reference: RESID:AA0268

Axiom
annotated source: tris-L-cysteinyl L-cysteine persulfido bis-L-glutamato L-histidino tetrairon disulfide trioxide
annotated property: has_exact_synonym
annotated target: 4Fe-2S-3O cluster
has_synonym_type: Alternate name from RESID

Axiom
annotated source: tris-L-cysteinyl L-cysteine persulfido bis-L-glutamato L-histidino tetrairon disulfide trioxide
annotated property: has_exact_synonym
annotated target: METAL Iron-oxo-sulfur (4Fe-2O-2S)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: tris-L-cysteinyl L-cysteine persulfido bis-L-glutamato L-histidino tetrairon disulfide trioxide
annotated property: has_exact_synonym
annotated target: METAL Iron-oxo-sulfur (4Fe-2O-2S); via persulfide group
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: tris-L-cysteinyl L-cysteine persulfido bis-L-glutamato L-histidino tetrairon disulfide trioxide
annotated property: has_exact_synonym
annotated target: METAL Iron-oxo-sulfur (4Fe-2O-2S); via tele nitrogen
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: tris-L-cysteinyl L-cysteine persulfido bis-L-glutamato L-histidino tetrairon disulfide trioxide
annotated property: has_exact_synonym
annotated target: hybrid four iron cluster 2
has_synonym_type: Alternate name from RESID

Axiom
annotated source: tris-L-cysteinyl L-cysteine persulfido bis-L-glutamato L-histidino tetrairon disulfide trioxide
annotated property: has_exact_synonym
annotated target: mu-1:2kappaO-oxido-mu-1:3kappaO-oxido-mu-2:4kappaO-oxido-mu-3:4kappaS-sulfido-mu3-2:3:4kappaS-sulfido-S-cysteinyl-N1'-histidino-O5-glutamato 1-iron-S5-cysteine persulfido-O5-glutamato 2-iron-3,4-bis-(S-cysteinyl iron)
has_synonym_type: Systematic name from RESID

Axiom
annotated source: tris-L-cysteinyl L-cysteine persulfido bis-L-glutamato L-histidino tetrairon disulfide trioxide
annotated property: has_exact_synonym
annotated target: tris-L-cysteinyl L-cysteine persulfido bis-L-glutamato L-histidino tetrairon disulfide trioxide
has_synonym_type: Name from RESID

Axiom
annotated source: tris-L-cysteinyl L-cysteine persulfido bis-L-glutamato L-histidino tetrairon disulfide trioxide
annotated property: has_related_synonym
annotated target: prismane iron-sulfur cofactor
has_synonym_type: Misnomer tagged alternate name from RESID

L-cysteine persulfide
type: Class
subclass of: MOD_00905
subclass of: MOD_01886
definition: A protein modification that effectively replaces the hydrogen atom of a cysteine sulfanyl group with a sulfanyl group, forming a disulfanyl group, and converting an L-cysteine residue to L-cysteine persulfide.
diff avg: 32.06
diff formula: C 0 H 0 N 0 O 0 S 1
diff mono: 31.97207
formula: C 3 H 5 N 1 O 1 S 2
mass avg: 135.2
mass mono: 134.98126
origin: C
source: natural
database_cross_reference: Unimod:421
database_cross_reference: uniprot.ptm:PTM-0106
has_exact_synonym: (R)-2-amino-3-disulfanylpropanoic acid
has_exact_synonym: 2-amino-3-disulfanylpropanoic acid
has_exact_synonym: 2-amino-3-hydrodisulfidopropanoic acid
has_exact_synonym: 2-amino-3-hydropersulfidopropanoic acid
has_exact_synonym: 2-amino-3-persulfhydrylpropanoic acid
has_exact_synonym: 3-(thiosulfeno)-alanine
has_exact_synonym: 3-disulfanylalanine
has_exact_synonym: ACT_SITE Cysteine persulfide intermediate
has_exact_synonym: L-cysteine persulfide
has_exact_synonym: MOD_RES Cysteine persulfide
has_exact_synonym: S-mercaptocysteine
has_exact_synonym: S-sulfanylcysteine
has_exact_synonym: thiocysteine
has_obo_namespace: PSI-MOD
has_related_synonym: Sulfide
has_related_synonym: persulfide
id: MOD:00274
in_subset: PSI-MOD-slim

Axiom
annotated source: L-cysteine persulfide
annotated property: definition
annotated target: A protein modification that effectively replaces the hydrogen atom of a cysteine sulfanyl group with a sulfanyl group, forming a disulfanyl group, and converting an L-cysteine residue to L-cysteine persulfide.
database_cross_reference: ChEBI:28839
database_cross_reference: PubMed:15096637
database_cross_reference: PubMed:4276457
database_cross_reference: PubMed:8161529
database_cross_reference: RESID:AA0269
database_cross_reference: Unimod:421

Axiom
annotated source: L-cysteine persulfide
annotated property: has_exact_synonym
annotated target: (R)-2-amino-3-disulfanylpropanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-cysteine persulfide
annotated property: has_exact_synonym
annotated target: 2-amino-3-disulfanylpropanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteine persulfide
annotated property: has_exact_synonym
annotated target: 2-amino-3-hydrodisulfidopropanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteine persulfide
annotated property: has_exact_synonym
annotated target: 2-amino-3-hydropersulfidopropanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteine persulfide
annotated property: has_exact_synonym
annotated target: 2-amino-3-persulfhydrylpropanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteine persulfide
annotated property: has_exact_synonym
annotated target: 3-(thiosulfeno)-alanine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteine persulfide
annotated property: has_exact_synonym
annotated target: 3-disulfanylalanine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteine persulfide
annotated property: has_exact_synonym
annotated target: ACT_SITE Cysteine persulfide intermediate
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-cysteine persulfide
annotated property: has_exact_synonym
annotated target: L-cysteine persulfide
has_synonym_type: Name from RESID

Axiom
annotated source: L-cysteine persulfide
annotated property: has_exact_synonym
annotated target: MOD_RES Cysteine persulfide
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-cysteine persulfide
annotated property: has_exact_synonym
annotated target: S-mercaptocysteine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteine persulfide
annotated property: has_exact_synonym
annotated target: S-sulfanylcysteine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteine persulfide
annotated property: has_exact_synonym
annotated target: thiocysteine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteine persulfide
annotated property: has_related_synonym
annotated target: Sulfide
has_synonym_type: Agreed label from MS community

Axiom
annotated source: L-cysteine persulfide
annotated property: has_related_synonym
annotated target: persulfide
has_synonym_type: Description (full_name) from Unimod

3'-(1'-L-histidyl)-L-tyrosine
type: Class
subclass of: MOD_00692
subclass of: MOD_02048
subclass of: MOD_02058
definition: A protein modification that effectively cross-links an L-histidine residue and an L-tyrosine residue by a carbon-nitrogen bond to form 3'-(1'-L-histidyl)-L-tyrosine.
diff avg: -2.02
diff formula: C 0 H -2 N 0 O 0
diff mono: -2.01565
formula: C 15 H 14 N 4 O 3
mass avg: 298.3
mass mono: 298.1066
origin: H, Y
source: natural
database_cross_reference: uniprot.ptm:PTM-0003
has_exact_synonym: (2S)-2-amino-3-[1-(5-[(2S)-2-amino-2-carboxyethyl]-2-hydroxyphenyl)-1H-imidazol-4-yl]propanoic acid
has_exact_synonym: 3'-(1'-L-histidyl)-L-tyrosine
has_exact_synonym: 3'-(N(epsilon)-histidyl)tyrosine
has_exact_synonym: 3'-(N1'-histidyl)tyrosine
has_exact_synonym: 3'-(tau-histidyl)tyrosine
has_exact_synonym: 3'-(tele-histidyl)tyrosine
has_exact_synonym: CROSSLNK 1'-histidyl-3'-tyrosine (His-Tyr)
has_obo_namespace: PSI-MOD
id: MOD:00275
in_subset: PSI-MOD-slim
comment: Cross-link 2.

Axiom
annotated source: 3'-(1'-L-histidyl)-L-tyrosine
annotated property: definition
annotated target: A protein modification that effectively cross-links an L-histidine residue and an L-tyrosine residue by a carbon-nitrogen bond to form 3'-(1'-L-histidyl)-L-tyrosine.
database_cross_reference: ChEBI:19837
database_cross_reference: PubMed:10338009
database_cross_reference: RESID:AA0270

Axiom
annotated source: 3'-(1'-L-histidyl)-L-tyrosine
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-3-[1-(5-[(2S)-2-amino-2-carboxyethyl]-2-hydroxyphenyl)-1H-imidazol-4-yl]propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: 3'-(1'-L-histidyl)-L-tyrosine
annotated property: has_exact_synonym
annotated target: 3'-(1'-L-histidyl)-L-tyrosine
has_synonym_type: Name from RESID

Axiom
annotated source: 3'-(1'-L-histidyl)-L-tyrosine
annotated property: has_exact_synonym
annotated target: 3'-(N(epsilon)-histidyl)tyrosine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 3'-(1'-L-histidyl)-L-tyrosine
annotated property: has_exact_synonym
annotated target: 3'-(N1'-histidyl)tyrosine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 3'-(1'-L-histidyl)-L-tyrosine
annotated property: has_exact_synonym
annotated target: 3'-(tau-histidyl)tyrosine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 3'-(1'-L-histidyl)-L-tyrosine
annotated property: has_exact_synonym
annotated target: 3'-(tele-histidyl)tyrosine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 3'-(1'-L-histidyl)-L-tyrosine
annotated property: has_exact_synonym
annotated target: CROSSLNK 1'-histidyl-3'-tyrosine (His-Tyr)
has_synonym_type: Protein feature description from UniProtKB

heme P460-bis-L-cysteine-L-lysine
type: Class
subclass of: MOD_00699
subclass of: MOD_02067
subclass of: MOD_02074
definition: A protein modification that effectively results from forming an adduct between two cysteine residues, a lysine residue, and the porphyrin compound heme b, (7,12-diethenyl-3,8,13,17-tetramethylporphyrin-2,18-dipropanoato)iron.
diff avg: 614.48
diff formula: C 34 Fe 1 H 30 N 4 O 4 S 0
diff mono: 614.1616
formula: C 46 Fe 1 H 52 N 8 O 7 S 2
mass avg: 948.94
mass mono: 948.27496
origin: C, C, K
source: natural
has_exact_synonym: (19S,20S)-[7,12-bis((S)-1-[((R)-2-amino-2-carboxy)ethylsulfanyl]ethyl)-20-([(S)-5-amino-5-carboxypentyl]amino)-3,8,13,17-tetramethyl-21H,23H-19,20-dihydroporphine-2,18-bis(2-carboxyethyl)-N21,N22,N23,N24]-ferrate
has_exact_synonym: BINDING Heme (covalent; via 3 links)
has_exact_synonym: bis(S-cysteinyl)-N6-lysino-heme
has_exact_synonym: heme P460-bis-L-cysteine-L-lysine
has_obo_namespace: PSI-MOD
id: MOD:00276
comment: Cross-link 3.

Axiom
annotated source: heme P460-bis-L-cysteine-L-lysine
annotated property: definition
annotated target: A protein modification that effectively results from forming an adduct between two cysteine residues, a lysine residue, and the porphyrin compound heme b, (7,12-diethenyl-3,8,13,17-tetramethylporphyrin-2,18-dipropanoato)iron.
database_cross_reference: PubMed:12709052
database_cross_reference: PubMed:9237682
database_cross_reference: RESID:AA0271

Axiom
annotated source: heme P460-bis-L-cysteine-L-lysine
annotated property: has_exact_synonym
annotated target: (19S,20S)-[7,12-bis((S)-1-[((R)-2-amino-2-carboxy)ethylsulfanyl]ethyl)-20-([(S)-5-amino-5-carboxypentyl]amino)-3,8,13,17-tetramethyl-21H,23H-19,20-dihydroporphine-2,18-bis(2-carboxyethyl)-N21,N22,N23,N24]-ferrate
has_synonym_type: Systematic name from RESID

Axiom
annotated source: heme P460-bis-L-cysteine-L-lysine
annotated property: has_exact_synonym
annotated target: BINDING Heme (covalent; via 3 links)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: heme P460-bis-L-cysteine-L-lysine
annotated property: has_exact_synonym
annotated target: bis(S-cysteinyl)-N6-lysino-heme
has_synonym_type: Alternate name from RESID

Axiom
annotated source: heme P460-bis-L-cysteine-L-lysine
annotated property: has_exact_synonym
annotated target: heme P460-bis-L-cysteine-L-lysine
has_synonym_type: Name from RESID

5-methyl-L-arginine
type: Class
subclass of: monomethylated L-arginine
subclass of: MOD_00656
definition: A protein modification that effectively converts an L-arginine residue to 5-methyl-L-arginine.
diff avg: 14.03
diff formula: C 1 H 2 N 0 O 0
diff mono: 14.01565
formula: C 7 H 14 N 4 O 1
mass avg: 170.22
mass mono: 170.11676
origin: R
source: natural
database_cross_reference: uniprot.ptm:PTM-0050
has_exact_synonym: (2S,5S)-2-amino-5-carbamimidamidohexanoic acid
has_exact_synonym: 2-amino-5-guanidinohexanoic acid
has_exact_synonym: 5-methyl-L-arginine
has_exact_synonym: 5-methylated L-arginine
has_exact_synonym: C5Me1Arg
has_exact_synonym: MOD_RES 5-methylarginine
has_exact_synonym: delta-methylarginine
has_obo_namespace: PSI-MOD
has_related_synonym: 4-methylarginine
has_related_synonym: Methyl
has_related_synonym: Methylation
id: MOD:00277

Axiom
annotated source: 5-methyl-L-arginine
annotated property: definition
annotated target: A protein modification that effectively converts an L-arginine residue to 5-methyl-L-arginine.
database_cross_reference: PubMed:10660523
database_cross_reference: PubMed:11875433
database_cross_reference: PubMed:9367957
database_cross_reference: RESID:AA0272

Axiom
annotated source: 5-methyl-L-arginine
annotated property: has_exact_synonym
annotated target: (2S,5S)-2-amino-5-carbamimidamidohexanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: 5-methyl-L-arginine
annotated property: has_exact_synonym
annotated target: 2-amino-5-guanidinohexanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 5-methyl-L-arginine
annotated property: has_exact_synonym
annotated target: 5-methyl-L-arginine
has_synonym_type: Name from RESID

Axiom
annotated source: 5-methyl-L-arginine
annotated property: has_exact_synonym
annotated target: 5-methylated L-arginine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: 5-methyl-L-arginine
annotated property: has_exact_synonym
annotated target: C5Me1Arg
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: 5-methyl-L-arginine
annotated property: has_exact_synonym
annotated target: MOD_RES 5-methylarginine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: 5-methyl-L-arginine
annotated property: has_exact_synonym
annotated target: delta-methylarginine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 5-methyl-L-arginine
annotated property: has_related_synonym
annotated target: 4-methylarginine
has_synonym_type: Misnomer tagged alternate name from RESID

Axiom
annotated source: 5-methyl-L-arginine
annotated property: has_related_synonym
annotated target: Methyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: 5-methyl-L-arginine
annotated property: has_related_synonym
annotated target: Methylation
has_synonym_type: Description (full_name) from Unimod

2-methyl-L-glutamine
type: Class
subclass of: MOD_00656
subclass of: MOD_00722
definition: A protein modification that effectively converts an L-glutamine residue to 2-methyl-L-glutamine.
diff avg: 14.03
diff formula: C 1 H 2 N 0 O 0
diff mono: 14.01565
formula: C 6 H 10 N 2 O 2
mass avg: 142.16
mass mono: 142.07423
origin: Q
source: natural
database_cross_reference: uniprot.ptm:PTM-0016
has_exact_synonym: (S)-2-amino-2-methylpentanediamic acid
has_exact_synonym: 2-methyl-L-glutamine
has_exact_synonym: 2-methylated L-glutamine
has_exact_synonym: 2-methylglutamine
has_exact_synonym: C2MeGln
has_exact_synonym: MOD_RES 2-methylglutamine
has_exact_synonym: alpha-methylglutamine
has_obo_namespace: PSI-MOD
has_related_synonym: Methyl
has_related_synonym: Methylation
id: MOD:00278

Axiom
annotated source: 2-methyl-L-glutamine
annotated property: definition
annotated target: A protein modification that effectively converts an L-glutamine residue to 2-methyl-L-glutamine.
database_cross_reference: PubMed:10660523
database_cross_reference: PubMed:11875433
database_cross_reference: PubMed:9367957
database_cross_reference: RESID:AA0273

Axiom
annotated source: 2-methyl-L-glutamine
annotated property: has_exact_synonym
annotated target: (S)-2-amino-2-methylpentanediamic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: 2-methyl-L-glutamine
annotated property: has_exact_synonym
annotated target: 2-methyl-L-glutamine
has_synonym_type: Name from RESID

Axiom
annotated source: 2-methyl-L-glutamine
annotated property: has_exact_synonym
annotated target: 2-methylated L-glutamine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: 2-methyl-L-glutamine
annotated property: has_exact_synonym
annotated target: 2-methylglutamine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 2-methyl-L-glutamine
annotated property: has_exact_synonym
annotated target: C2MeGln
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: 2-methyl-L-glutamine
annotated property: has_exact_synonym
annotated target: MOD_RES 2-methylglutamine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: 2-methyl-L-glutamine
annotated property: has_exact_synonym
annotated target: alpha-methylglutamine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 2-methyl-L-glutamine
annotated property: has_related_synonym
annotated target: Methyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: 2-methyl-L-glutamine
annotated property: has_related_synonym
annotated target: Methylation
has_synonym_type: Description (full_name) from Unimod

N-pyruvic acid 2-iminyl-L-cysteine
type: Class
subclass of: MOD_00905
subclass of: MOD_01170
definition: A protein modification that effectively converts an L-cysteine residue to N-pyruvic acid 2-iminyl-L-cysteine.
diff avg: 70.05
diff formula: C 3 H 2 N 0 O 2 S 0
diff mono: 70.00548
formula: C 6 H 8 N 1 O 3 S 1
mass avg: 174.19
mass mono: 174.02249
origin: C
source: natural
term spec: N-term
database_cross_reference: Unimod:422
database_cross_reference: uniprot.ptm:PTM-0224
has_exact_synonym: (R)-2-(1-carboxy-2-sulfanylethanimino)propanoic acid
has_exact_synonym: MOD_RES N-pyruvate 2-iminyl-cysteine
has_exact_synonym: N-pyruvic acid 2-iminyl-L-cysteine
has_obo_namespace: PSI-MOD
has_related_synonym: N-pyruvic acid 2-iminyl
has_related_synonym: PyruvicAcidIminyl
id: MOD:00279
in_subset: PSI-MOD-slim

Axiom
annotated source: N-pyruvic acid 2-iminyl-L-cysteine
annotated property: definition
annotated target: A protein modification that effectively converts an L-cysteine residue to N-pyruvic acid 2-iminyl-L-cysteine.
database_cross_reference: PubMed:1388164
database_cross_reference: RESID:AA0274
database_cross_reference: Unimod:422#C

Axiom
annotated source: N-pyruvic acid 2-iminyl-L-cysteine
annotated property: has_exact_synonym
annotated target: (R)-2-(1-carboxy-2-sulfanylethanimino)propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N-pyruvic acid 2-iminyl-L-cysteine
annotated property: has_exact_synonym
annotated target: MOD_RES N-pyruvate 2-iminyl-cysteine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N-pyruvic acid 2-iminyl-L-cysteine
annotated property: has_exact_synonym
annotated target: N-pyruvic acid 2-iminyl-L-cysteine
has_synonym_type: Name from RESID

Axiom
annotated source: N-pyruvic acid 2-iminyl-L-cysteine
annotated property: has_related_synonym
annotated target: N-pyruvic acid 2-iminyl
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: N-pyruvic acid 2-iminyl-L-cysteine
annotated property: has_related_synonym
annotated target: PyruvicAcidIminyl
has_synonym_type: Agreed label from MS community

N-pyruvic acid 2-iminyl-L-valine
type: Class
subclass of: MOD_00920
subclass of: MOD_01170
definition: A protein modification that effectively converts an L-valine residue to N-pyruvic acid 2-iminyl-L-valine.
diff avg: 70.05
diff formula: C 3 H 2 N 0 O 2
diff mono: 70.00548
formula: C 8 H 12 N 1 O 3
mass avg: 170.19
mass mono: 170.08171
origin: V
source: natural
term spec: N-term
database_cross_reference: Unimod:422
database_cross_reference: uniprot.ptm:PTM-0225
has_exact_synonym: (S)-2-(1-carboxy-2-methylpropanimino)propanoic acid
has_exact_synonym: MOD_RES N-pyruvate 2-iminyl-valine
has_exact_synonym: N-pyruvic acid 2-iminyl-L-valine
has_obo_namespace: PSI-MOD
has_related_synonym: N-pyruvic acid 2-iminyl
has_related_synonym: PyruvicAcidIminyl
id: MOD:00280
in_subset: PSI-MOD-slim

Axiom
annotated source: N-pyruvic acid 2-iminyl-L-valine
annotated property: definition
annotated target: A protein modification that effectively converts an L-valine residue to N-pyruvic acid 2-iminyl-L-valine.
database_cross_reference: PubMed:2071591
database_cross_reference: RESID:AA0275
database_cross_reference: Unimod:422#V

Axiom
annotated source: N-pyruvic acid 2-iminyl-L-valine
annotated property: has_exact_synonym
annotated target: (S)-2-(1-carboxy-2-methylpropanimino)propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N-pyruvic acid 2-iminyl-L-valine
annotated property: has_exact_synonym
annotated target: MOD_RES N-pyruvate 2-iminyl-valine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N-pyruvic acid 2-iminyl-L-valine
annotated property: has_exact_synonym
annotated target: N-pyruvic acid 2-iminyl-L-valine
has_synonym_type: Name from RESID

Axiom
annotated source: N-pyruvic acid 2-iminyl-L-valine
annotated property: has_related_synonym
annotated target: N-pyruvic acid 2-iminyl
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: N-pyruvic acid 2-iminyl-L-valine
annotated property: has_related_synonym
annotated target: PyruvicAcidIminyl
has_synonym_type: Agreed label from MS community

3'-heme-L-histidine
type: Class
subclass of: MOD_00699
subclass of: MOD_02070
definition: A protein modification that effectively results from forming an adduct between the pros nitrogen of a histidine residue and the porphyrin compound heme b, (7,12-diethenyl-3,8,13,17-tetramethylporphyrin-2,18-dipropanoato)iron.
diff avg: 616.5
diff formula: C 34 Fe 1 H 32 N 4 O 4
diff mono: 616.1773
formula: C 40 Fe 1 H 39 N 7 O 5
mass avg: 753.64
mass mono: 753.2362
origin: H
source: natural
has_exact_synonym: 2-[1-(N3'-histidyl)ethyl]protoporphyrin IX
has_exact_synonym: 3'-heme-L-histidine
has_exact_synonym: BINDING Heme (covalent; via pros nitrogen)
has_exact_synonym: N(delta)-histidyl heme
has_exact_synonym: N(pi)-histidyl heme
has_exact_synonym: N3'-histidyl heme
has_exact_synonym: [7-ethenyl-12-((S)-1-[((R)-2-amino-2-carboxyethyl)-3H-imidazol-3-yl]ethyl)-3,8,13,17-tetramethyl-21H,23H-porphine-2,18-bis(2-carboxyethyl)-N21,N22,N23,N24]-ferrate
has_exact_synonym: pros-histidyl heme
has_obo_namespace: PSI-MOD
id: MOD:00281

Axiom
annotated source: 3'-heme-L-histidine
annotated property: definition
annotated target: A protein modification that effectively results from forming an adduct between the pros nitrogen of a histidine residue and the porphyrin compound heme b, (7,12-diethenyl-3,8,13,17-tetramethylporphyrin-2,18-dipropanoato)iron.
database_cross_reference: PubMed:12119398
database_cross_reference: PubMed:12429096
database_cross_reference: PubMed:12486054
database_cross_reference: PubMed:9712585
database_cross_reference: RESID:AA0276

Axiom
annotated source: 3'-heme-L-histidine
annotated property: has_exact_synonym
annotated target: 2-[1-(N3'-histidyl)ethyl]protoporphyrin IX
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 3'-heme-L-histidine
annotated property: has_exact_synonym
annotated target: 3'-heme-L-histidine
has_synonym_type: Name from RESID

Axiom
annotated source: 3'-heme-L-histidine
annotated property: has_exact_synonym
annotated target: BINDING Heme (covalent; via pros nitrogen)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: 3'-heme-L-histidine
annotated property: has_exact_synonym
annotated target: N(delta)-histidyl heme
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 3'-heme-L-histidine
annotated property: has_exact_synonym
annotated target: N(pi)-histidyl heme
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 3'-heme-L-histidine
annotated property: has_exact_synonym
annotated target: N3'-histidyl heme
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 3'-heme-L-histidine
annotated property: has_exact_synonym
annotated target: [7-ethenyl-12-((S)-1-[((R)-2-amino-2-carboxyethyl)-3H-imidazol-3-yl]ethyl)-3,8,13,17-tetramethyl-21H,23H-porphine-2,18-bis(2-carboxyethyl)-N21,N22,N23,N24]-ferrate
has_synonym_type: Systematic name from RESID

Axiom
annotated source: 3'-heme-L-histidine
annotated property: has_exact_synonym
annotated target: pros-histidyl heme
has_synonym_type: Alternate name from RESID

S-selenyl-L-cysteine
type: Class
subclass of: MOD_00745
subclass of: MOD_00778
subclass of: MOD_00905
definition: A protein modification that effectively converts an L-cysteine residue to S-selenyl-L-cysteine.
diff avg: 78.97
diff formula: C 0 H 0 N 0 O 0 S 0 Se 1
diff mono: 79.91652
formula: C 3 H 5 N 1 O 1 S 1 Se 1
mass avg: 182.11
mass mono: 182.9257
origin: C
source: hypothetical
database_cross_reference: Unimod:423
database_cross_reference: uniprot.ptm:PTM-0282
has_exact_synonym: (R)-2-amino-3-(selanylsulfanyl)propanoic acid
has_exact_synonym: 2-amino-3-hydroselenosulfidopropanoic acid
has_exact_synonym: 2-amino-3-hydroselenylsulfidopropanoic acid
has_exact_synonym: 2-amino-3-hydroselenylthiopropanoic acid
has_exact_synonym: ACT_SITE S-selanylcysteine intermediate
has_exact_synonym: MOD_RES S-selenylcysteine
has_exact_synonym: S-selanyl-L-cysteine
has_exact_synonym: S-selanylcysteine
has_exact_synonym: S-selenylcysteine
has_obo_namespace: PSI-MOD
has_related_synonym: Delta:Se(1)
has_related_synonym: cysteine perselenide
has_related_synonym: selenyl
id: MOD:00282

Axiom
annotated source: S-selenyl-L-cysteine
annotated property: definition
annotated target: A protein modification that effectively converts an L-cysteine residue to S-selenyl-L-cysteine.
database_cross_reference: PubMed:10430865
database_cross_reference: PubMed:10966817
database_cross_reference: PubMed:11827487
database_cross_reference: PubMed:12716131
database_cross_reference: PubMed:14594807
database_cross_reference: RESID:AA0277
database_cross_reference: Unimod:423#C

Axiom
annotated source: S-selenyl-L-cysteine
annotated property: has_exact_synonym
annotated target: (R)-2-amino-3-(selanylsulfanyl)propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: S-selenyl-L-cysteine
annotated property: has_exact_synonym
annotated target: 2-amino-3-hydroselenosulfidopropanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-selenyl-L-cysteine
annotated property: has_exact_synonym
annotated target: 2-amino-3-hydroselenylsulfidopropanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-selenyl-L-cysteine
annotated property: has_exact_synonym
annotated target: 2-amino-3-hydroselenylthiopropanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-selenyl-L-cysteine
annotated property: has_exact_synonym
annotated target: ACT_SITE S-selanylcysteine intermediate
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: S-selenyl-L-cysteine
annotated property: has_exact_synonym
annotated target: MOD_RES S-selenylcysteine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: S-selenyl-L-cysteine
annotated property: has_exact_synonym
annotated target: S-selanyl-L-cysteine
has_synonym_type: Name from RESID

Axiom
annotated source: S-selenyl-L-cysteine
annotated property: has_exact_synonym
annotated target: S-selanylcysteine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-selenyl-L-cysteine
annotated property: has_exact_synonym
annotated target: S-selenylcysteine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-selenyl-L-cysteine
annotated property: has_related_synonym
annotated target: Delta:Se(1)
has_synonym_type: Agreed label from MS community

Axiom
annotated source: S-selenyl-L-cysteine
annotated property: has_related_synonym
annotated target: cysteine perselenide
has_synonym_type: Misnomer tagged alternate name from RESID

Axiom
annotated source: S-selenyl-L-cysteine
annotated property: has_related_synonym
annotated target: selenyl
has_synonym_type: Description (full_name) from Unimod

N6-propylamino-poly(propylmethylamino)-propyldimethylamine-L-lysine
type: Class
subclass of: MOD_00912
definition: A protein modification that effectively converts an L-lysine residue to an N6-propylamino-poly(propylmethylamino)-propyldimethylamine-L-lysine.
origin: K
source: natural
database_cross_reference: uniprot.ptm:PTM-0198
has_exact_synonym: (alpha)- ([([(5S)-5-amino-5-carboxypentyl]amino)propyl][(methyl)amino])-(omega)-methyl poly[propane-1,3-diyl(methylimino)]
has_exact_synonym: MOD_RES N6-poly(methylaminopropyl)lysine
has_exact_synonym: N6-propylamino-poly(propylmethylamino)-propyldimethylamine-L-lysine
has_exact_synonym: lysine derivative Lys(x)
has_exact_synonym: silaffin polycationic lysine derivative
has_obo_namespace: PSI-MOD
id: MOD:00283

Axiom
annotated source: N6-propylamino-poly(propylmethylamino)-propyldimethylamine-L-lysine
annotated property: definition
annotated target: A protein modification that effectively converts an L-lysine residue to an N6-propylamino-poly(propylmethylamino)-propyldimethylamine-L-lysine.
database_cross_reference: PubMed:10550045
database_cross_reference: PubMed:11349130
database_cross_reference: RESID:AA0278

Axiom
annotated source: N6-propylamino-poly(propylmethylamino)-propyldimethylamine-L-lysine
annotated property: has_exact_synonym
annotated target: (alpha)- ([([(5S)-5-amino-5-carboxypentyl]amino)propyl][(methyl)amino])-(omega)-methyl poly[propane-1,3-diyl(methylimino)]
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N6-propylamino-poly(propylmethylamino)-propyldimethylamine-L-lysine
annotated property: has_exact_synonym
annotated target: MOD_RES N6-poly(methylaminopropyl)lysine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N6-propylamino-poly(propylmethylamino)-propyldimethylamine-L-lysine
annotated property: has_exact_synonym
annotated target: N6-propylamino-poly(propylmethylamino)-propyldimethylamine-L-lysine
has_synonym_type: Name from RESID

Axiom
annotated source: N6-propylamino-poly(propylmethylamino)-propyldimethylamine-L-lysine
annotated property: has_exact_synonym
annotated target: lysine derivative Lys(x)
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N6-propylamino-poly(propylmethylamino)-propyldimethylamine-L-lysine
annotated property: has_exact_synonym
annotated target: silaffin polycationic lysine derivative
has_synonym_type: Alternate name from RESID

dihydroxyheme-L-aspartate ester-L-glutamate ester
type: Class
subclass of: MOD_00699
subclass of: MOD_02066
subclass of: MOD_02068
definition: A protein modification that effectively results from forming an adduct between an aspartic acid residue, a glutamic acid residue, and the porphyrin compound heme b, (7,12-diethenyl-3,8,13,17-tetramethylporphyrin-2,18-dipropanoato)iron.
diff avg: 612.47
diff formula: C 34 Fe 1 H 28 N 4 O 4
diff mono: 612.146
formula: C 43 Fe 1 H 40 N 6 O 10
mass avg: 856.67
mass mono: 856.2155
origin: D, E
source: hypothetical
has_exact_synonym: 1,5-bishydroxymethyl protoporphyrin IX 1-glutamate ester 5-aspartate ester
has_exact_synonym: BINDING Heme (covalent; via 2 links)
has_exact_synonym: [13-[(S)-(4-amino-4-carboxy)butanoyloxymethyl]-3-[(S)-(3-amino-3-carboxy)propanoyloxymethyl]-7,12-diethenyl-8,17-dimethyl-21H,23H-porphine-2,18-bis(2-carboxyethyl)-N21,N22,N23,N24]-ferrate
has_exact_synonym: dihydroxyheme-L-aspartate ester-L-glutamate ester
has_exact_synonym: peroxidase heme cofactor
has_obo_namespace: PSI-MOD
id: MOD:00284
comment: Cross-link 2.

Axiom
annotated source: dihydroxyheme-L-aspartate ester-L-glutamate ester
annotated property: definition
annotated target: A protein modification that effectively results from forming an adduct between an aspartic acid residue, a glutamic acid residue, and the porphyrin compound heme b, (7,12-diethenyl-3,8,13,17-tetramethylporphyrin-2,18-dipropanoato)iron.
database_cross_reference: PubMed:10447690
database_cross_reference: RESID:AA0279

Axiom
annotated source: dihydroxyheme-L-aspartate ester-L-glutamate ester
annotated property: has_exact_synonym
annotated target: 1,5-bishydroxymethyl protoporphyrin IX 1-glutamate ester 5-aspartate ester
has_synonym_type: Alternate name from RESID

Axiom
annotated source: dihydroxyheme-L-aspartate ester-L-glutamate ester
annotated property: has_exact_synonym
annotated target: BINDING Heme (covalent; via 2 links)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: dihydroxyheme-L-aspartate ester-L-glutamate ester
annotated property: has_exact_synonym
annotated target: [13-[(S)-(4-amino-4-carboxy)butanoyloxymethyl]-3-[(S)-(3-amino-3-carboxy)propanoyloxymethyl]-7,12-diethenyl-8,17-dimethyl-21H,23H-porphine-2,18-bis(2-carboxyethyl)-N21,N22,N23,N24]-ferrate
has_synonym_type: Systematic name from RESID

Axiom
annotated source: dihydroxyheme-L-aspartate ester-L-glutamate ester
annotated property: has_exact_synonym
annotated target: dihydroxyheme-L-aspartate ester-L-glutamate ester
has_synonym_type: Name from RESID

Axiom
annotated source: dihydroxyheme-L-aspartate ester-L-glutamate ester
annotated property: has_exact_synonym
annotated target: peroxidase heme cofactor
has_synonym_type: Alternate name from RESID

dihydroxyheme-L-aspartate ester-L-glutamate ester-L-methionine sulfonium
type: Class
subclass of: MOD_00699
subclass of: MOD_02066
subclass of: MOD_02068
subclass of: MOD_02071
definition: A protein modification that effectively results from forming an adduct between an aspartic acid residue, a glutamic acid residue, a methionine residue (forming a sulfonium ether), and the porphyrin compound heme b, (7,12-diethenyl-3,8,13,17-tetramethylporphyrin-2,18-dipropanoato)iron.
diff avg: 613.47
diff formula: C 34 Fe 1 H 29 N 4 O 4 S 0
diff mono: 613.15326
formal charge: 1+
formula: C 48 Fe 1 H 50 N 7 O 11 S 1
mass avg: 988.87
mass mono: 988.2633
origin: D, E, M
source: natural
has_exact_synonym: 1,5-bishydroxymethyl protoporphyrin IX 1-glutamate ester 5-aspartate ester 2-methionine sulfonium
has_exact_synonym: BINDING Heme (covalent; via 3 links)
has_exact_synonym: [13-[(S)-(4-amino-4-carboxy)butanoyloxymethyl]-3-[(S)-(3-amino-3-carboxy)propanoyloxymethyl]-12-[(S)-(3-amino-3-carboxy)propylsulfoniumethyl]-7-ethenyl-8,17-dimethyl-21H,23H-porphine-2,18-bis(2-carboxyethyl)-N21,N22,N23,N24]-ferrate
has_exact_synonym: dihydroxyheme-L-aspartate ester-L-glutamate ester-L-methionine sulfonium
has_exact_synonym: myeloperoxidase heme cofactor
has_obo_namespace: PSI-MOD
id: MOD:00285
comment: Cross-link 3.

Axiom
annotated source: dihydroxyheme-L-aspartate ester-L-glutamate ester-L-methionine sulfonium
annotated property: definition
annotated target: A protein modification that effectively results from forming an adduct between an aspartic acid residue, a glutamic acid residue, a methionine residue (forming a sulfonium ether), and the porphyrin compound heme b, (7,12-diethenyl-3,8,13,17-tetramethylporphyrin-2,18-dipropanoato)iron.
database_cross_reference: PubMed:10447690
database_cross_reference: PubMed:10480885
database_cross_reference: PubMed:1320128
database_cross_reference: PubMed:7840679
database_cross_reference: RESID:AA0280

Axiom
annotated source: dihydroxyheme-L-aspartate ester-L-glutamate ester-L-methionine sulfonium
annotated property: has_exact_synonym
annotated target: 1,5-bishydroxymethyl protoporphyrin IX 1-glutamate ester 5-aspartate ester 2-methionine sulfonium
has_synonym_type: Alternate name from RESID

Axiom
annotated source: dihydroxyheme-L-aspartate ester-L-glutamate ester-L-methionine sulfonium
annotated property: has_exact_synonym
annotated target: BINDING Heme (covalent; via 3 links)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: dihydroxyheme-L-aspartate ester-L-glutamate ester-L-methionine sulfonium
annotated property: has_exact_synonym
annotated target: [13-[(S)-(4-amino-4-carboxy)butanoyloxymethyl]-3-[(S)-(3-amino-3-carboxy)propanoyloxymethyl]-12-[(S)-(3-amino-3-carboxy)propylsulfoniumethyl]-7-ethenyl-8,17-dimethyl-21H,23H-porphine-2,18-bis(2-carboxyethyl)-N21,N22,N23,N24]-ferrate
has_synonym_type: Systematic name from RESID

Axiom
annotated source: dihydroxyheme-L-aspartate ester-L-glutamate ester-L-methionine sulfonium
annotated property: has_exact_synonym
annotated target: dihydroxyheme-L-aspartate ester-L-glutamate ester-L-methionine sulfonium
has_synonym_type: Name from RESID

Axiom
annotated source: dihydroxyheme-L-aspartate ester-L-glutamate ester-L-methionine sulfonium
annotated property: has_exact_synonym
annotated target: myeloperoxidase heme cofactor
has_synonym_type: Alternate name from RESID

L-cysteinyl molybdenum bis(molybdopterin guanine dinucleotide)
type: Class
subclass of: MOD_01167
subclass of: MOD_02067
definition: A protein modification that effectively converts an L-cysteine residue to L-cysteinyl molybdenum bis(molybdopterin guanine dinucleotide).
diff avg: 1572.02
diff formula: C 40 H 47 Mo 1 N 20 O 26 P 4 S 4
diff mono: 1572.9857
formula: C 43 H 52 Mo 1 N 21 O 27 P 4 S 5
mass avg: 1675.15
mass mono: 1675.995
origin: C
source: hypothetical
database_cross_reference: Unimod:424
has_exact_synonym: 2-amino-5,6-dimercapto-7-methyl-3,7,8a,9-tetrahydro-8-oxa-1,3,9,10-tetraazaanthracen-4-one guanosine dinucleotide
has_exact_synonym: L-cysteinyl molybdenum bis(molybdopterin guanine dinucleotide)
has_exact_synonym: bis[8-amino-1a,2,4a,5,6,7,10-heptahydro-2-(trihydrogen diphosphate 5'-ester with guanosine)methyl-6-oxo-3,4-disulfanyl-pteridino[6,7-5,6]pyranoato-S3,S4]-cystein-S-yl-molybdenum
has_obo_namespace: PSI-MOD
has_related_synonym: MolybdopterinGD
has_related_synonym: molybdenum bis(molybdopterin guanine dinucleotide)
id: MOD:00286

Axiom
annotated source: L-cysteinyl molybdenum bis(molybdopterin guanine dinucleotide)
annotated property: definition
annotated target: A protein modification that effectively converts an L-cysteine residue to L-cysteinyl molybdenum bis(molybdopterin guanine dinucleotide).
database_cross_reference: RESID:AA0281
database_cross_reference: Unimod:424#C

Axiom
annotated source: L-cysteinyl molybdenum bis(molybdopterin guanine dinucleotide)
annotated property: has_exact_synonym
annotated target: 2-amino-5,6-dimercapto-7-methyl-3,7,8a,9-tetrahydro-8-oxa-1,3,9,10-tetraazaanthracen-4-one guanosine dinucleotide
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteinyl molybdenum bis(molybdopterin guanine dinucleotide)
annotated property: has_exact_synonym
annotated target: L-cysteinyl molybdenum bis(molybdopterin guanine dinucleotide)
has_synonym_type: Name from RESID

Axiom
annotated source: L-cysteinyl molybdenum bis(molybdopterin guanine dinucleotide)
annotated property: has_exact_synonym
annotated target: bis[8-amino-1a,2,4a,5,6,7,10-heptahydro-2-(trihydrogen diphosphate 5'-ester with guanosine)methyl-6-oxo-3,4-disulfanyl-pteridino[6,7-5,6]pyranoato-S3,S4]-cystein-S-yl-molybdenum
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-cysteinyl molybdenum bis(molybdopterin guanine dinucleotide)
annotated property: has_related_synonym
annotated target: MolybdopterinGD
has_synonym_type: Agreed label from MS community

Axiom
annotated source: L-cysteinyl molybdenum bis(molybdopterin guanine dinucleotide)
annotated property: has_related_synonym
annotated target: molybdenum bis(molybdopterin guanine dinucleotide)
has_synonym_type: Description (full_name) from Unimod

(2S,3R,4S)-3,4-dihydroxyproline
type: Class
subclass of: MOD_00866
definition: A protein modification that effectively converts an L-proline residue to a (2S,3R,4S)-3,4-dihydroxyproline.
diff avg: 32.0
diff formula: C 0 H 0 N 0 O 2
diff mono: 31.989828
formula: C 5 H 7 N 1 O 3
mass avg: 129.12
mass mono: 129.04259
origin: P
source: natural
database_cross_reference: Unimod:425
database_cross_reference: uniprot.ptm:PTM-0306
has_exact_synonym: (2S,3R,4S)-3,4-dihydroxyproline
has_exact_synonym: (2S,3R,4S)-3,4-dihydroxypyrrolidine-2-carboxylic acid
has_exact_synonym: 2,3-trans-3,4-cis-3,4-dihydroxy-L-proline
has_exact_synonym: 2-alpha-3-beta-4-beta-3,4-dihydroxyproline
has_exact_synonym: 3,4-Dihydroxylation (of Proline)
has_exact_synonym: 3,4-dihydroxylated L-proline
has_exact_synonym: 34Hy2Pro
has_exact_synonym: MOD_RES (3R,4S)-3,4-dihydroxyproline
has_exact_synonym: trans-2,3-cis-3,4-dihydroxy-L-proline
has_obo_namespace: PSI-MOD
has_related_synonym: Dioxidation
has_related_synonym: dihydroxy
id: MOD:00287
comment: From DeltaMass: Average Mass: 32.

Axiom
annotated source: (2S,3R,4S)-3,4-dihydroxyproline
annotated property: definition
annotated target: A protein modification that effectively converts an L-proline residue to a (2S,3R,4S)-3,4-dihydroxyproline.
database_cross_reference: ChEBI:141803
database_cross_reference: DeltaMass:0
database_cross_reference: PubMed:12686488
database_cross_reference: RESID:AA0282
database_cross_reference: Unimod:425#P

Axiom
annotated source: (2S,3R,4S)-3,4-dihydroxyproline
annotated property: has_exact_synonym
annotated target: (2S,3R,4S)-3,4-dihydroxyproline
has_synonym_type: Name from RESID

Axiom
annotated source: (2S,3R,4S)-3,4-dihydroxyproline
annotated property: has_exact_synonym
annotated target: (2S,3R,4S)-3,4-dihydroxypyrrolidine-2-carboxylic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: (2S,3R,4S)-3,4-dihydroxyproline
annotated property: has_exact_synonym
annotated target: 2,3-trans-3,4-cis-3,4-dihydroxy-L-proline
has_synonym_type: Alternate name from RESID

Axiom
annotated source: (2S,3R,4S)-3,4-dihydroxyproline
annotated property: has_exact_synonym
annotated target: 2-alpha-3-beta-4-beta-3,4-dihydroxyproline
has_synonym_type: Alternate name from RESID

Axiom
annotated source: (2S,3R,4S)-3,4-dihydroxyproline
annotated property: has_exact_synonym
annotated target: 3,4-Dihydroxylation (of Proline)
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: (2S,3R,4S)-3,4-dihydroxyproline
annotated property: has_exact_synonym
annotated target: 3,4-dihydroxylated L-proline
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: (2S,3R,4S)-3,4-dihydroxyproline
annotated property: has_exact_synonym
annotated target: 34Hy2Pro
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: (2S,3R,4S)-3,4-dihydroxyproline
annotated property: has_exact_synonym
annotated target: MOD_RES (3R,4S)-3,4-dihydroxyproline
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: (2S,3R,4S)-3,4-dihydroxyproline
annotated property: has_exact_synonym
annotated target: trans-2,3-cis-3,4-dihydroxy-L-proline
has_synonym_type: Alternate name from RESID

Axiom
annotated source: (2S,3R,4S)-3,4-dihydroxyproline
annotated property: has_related_synonym
annotated target: Dioxidation
has_synonym_type: Agreed label from MS community

Axiom
annotated source: (2S,3R,4S)-3,4-dihydroxyproline
annotated property: has_related_synonym
annotated target: dihydroxy
has_synonym_type: Description (full_name) from Unimod

pyrroloquinoline quinone
type: Class
subclass of: MOD_00692
subclass of: MOD_02045
subclass of: MOD_02058
definition: A protein modification that effectively doubly cross-links an L-glutamic acid residue and an L-tyrosine residue with a carbon-carbon bond and a carbon-nitrogen bond to form pyrroloquinoline quinone.
diff avg: 37.92
diff formula: C 0 H -10 N 0 O 3
diff mono: 37.906494
formula: C 14 H 6 N 2 O 8
mass avg: 330.21
mass mono: 330.01242
origin: E, Y
source: natural
database_cross_reference: uniprot.ptm:PTM-0263
has_exact_synonym: 2,4,6-tricarboxylic-pyrrolo[2,3-5,6]quinoline 8,9-quinone
has_exact_synonym: 2,7,9-tricarboxy-1H-pyrrolo(2,3-f)quinoline-4,5-dione
has_exact_synonym: 4,5-dihydro-4,5-dioxo-1H-pyrrolo[2,3-5,6]quinoline-2,7,9-tricarboxylic acid
has_exact_synonym: CROSSLNK Pyrroloquinoline quinone (Glu-Tyr)
has_exact_synonym: coenzyme PQQ
has_exact_synonym: methoxatin
has_exact_synonym: pyrroloquinoline quinone
has_obo_namespace: PSI-MOD
id: MOD:00288
comment: Cross-link 2.

Axiom
annotated source: pyrroloquinoline quinone
annotated property: definition
annotated target: A protein modification that effectively doubly cross-links an L-glutamic acid residue and an L-tyrosine residue with a carbon-carbon bond and a carbon-nitrogen bond to form pyrroloquinoline quinone.
database_cross_reference: ChEBI:18315
database_cross_reference: PubMed:1310505
database_cross_reference: PubMed:7665488
database_cross_reference: RESID:AA0283

Axiom
annotated source: pyrroloquinoline quinone
annotated property: has_exact_synonym
annotated target: 2,4,6-tricarboxylic-pyrrolo[2,3-5,6]quinoline 8,9-quinone
has_synonym_type: Alternate name from RESID

Axiom
annotated source: pyrroloquinoline quinone
annotated property: has_exact_synonym
annotated target: 2,7,9-tricarboxy-1H-pyrrolo(2,3-f)quinoline-4,5-dione
has_synonym_type: Alternate name from RESID

Axiom
annotated source: pyrroloquinoline quinone
annotated property: has_exact_synonym
annotated target: 4,5-dihydro-4,5-dioxo-1H-pyrrolo[2,3-5,6]quinoline-2,7,9-tricarboxylic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: pyrroloquinoline quinone
annotated property: has_exact_synonym
annotated target: CROSSLNK Pyrroloquinoline quinone (Glu-Tyr)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: pyrroloquinoline quinone
annotated property: has_exact_synonym
annotated target: coenzyme PQQ
has_synonym_type: Alternate name from RESID

Axiom
annotated source: pyrroloquinoline quinone
annotated property: has_exact_synonym
annotated target: methoxatin
has_synonym_type: Alternate name from RESID

Axiom
annotated source: pyrroloquinoline quinone
annotated property: has_exact_synonym
annotated target: pyrroloquinoline quinone
has_synonym_type: Name from RESID

tris-L-cysteinyl L-N1'-histidino tetrairon tetrasulfide
type: Class
subclass of: MOD_00739
subclass of: MOD_02067
subclass of: MOD_02070
definition: A protein modification that effectively converts three L-cysteine residues, an L-histidine residue and a four-iron four-sulfur cluster to tris-L-cysteinyl L-N1'-histidino tetrairon tetrasulfide.
diff avg: 347.59
diff formula: C 0 Fe 4 H -4 N 0 O 0 S 4
diff mono: 347.59784
formal charge: 2-
formula: C 15 Fe 4 H 18 N 6 O 4 S 7
mass avg: 794.15
mass mono: 793.6843
origin: C, C, C, H
source: natural
has_exact_synonym: METAL Iron-sulfur (4Fe-4S)
has_exact_synonym: METAL Iron-sulfur (4Fe-4S); via tele nitrogen
has_exact_synonym: tetra-mu3-sulfidotris(S-cysteinyliron)(N1'-histidinoiron)
has_exact_synonym: tris-L-cysteinyl L-N1'-histidino tetrairon tetrasulfide
has_obo_namespace: PSI-MOD
id: MOD:00289
comment: Cross-link 4.

Axiom
annotated source: tris-L-cysteinyl L-N1'-histidino tetrairon tetrasulfide
annotated property: definition
annotated target: A protein modification that effectively converts three L-cysteine residues, an L-histidine residue and a four-iron four-sulfur cluster to tris-L-cysteinyl L-N1'-histidino tetrairon tetrasulfide.
database_cross_reference: PubMed:9836629
database_cross_reference: RESID:AA0284

Axiom
annotated source: tris-L-cysteinyl L-N1'-histidino tetrairon tetrasulfide
annotated property: has_exact_synonym
annotated target: METAL Iron-sulfur (4Fe-4S)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: tris-L-cysteinyl L-N1'-histidino tetrairon tetrasulfide
annotated property: has_exact_synonym
annotated target: METAL Iron-sulfur (4Fe-4S); via tele nitrogen
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: tris-L-cysteinyl L-N1'-histidino tetrairon tetrasulfide
annotated property: has_exact_synonym
annotated target: tetra-mu3-sulfidotris(S-cysteinyliron)(N1'-histidinoiron)
has_synonym_type: Systematic name from RESID

Axiom
annotated source: tris-L-cysteinyl L-N1'-histidino tetrairon tetrasulfide
annotated property: has_exact_synonym
annotated target: tris-L-cysteinyl L-N1'-histidino tetrairon tetrasulfide
has_synonym_type: Name from RESID

tris-L-cysteinyl L-N3'-histidino tetrairon tetrasulfide
type: Class
subclass of: MOD_00739
subclass of: MOD_02067
subclass of: MOD_02070
definition: A protein modification that effectively converts three L-cysteine residues, an L-histidine residue and a four-iron four-sulfur cluster to tris-L-cysteinyl L-N3'-histidino tetrairon tetrasulfide.
diff avg: 347.59
diff formula: C 0 Fe 4 H -4 N 0 O 0 S 4
diff mono: 347.59784
formal charge: 2-
formula: C 15 Fe 4 H 18 N 6 O 4 S 7
mass avg: 794.15
mass mono: 793.6843
origin: C, C, C, H
source: natural
has_exact_synonym: METAL Iron-sulfur (4Fe-4S)
has_exact_synonym: METAL Iron-sulfur (4Fe-4S); via pros nitrogen
has_exact_synonym: tetra-mu3-sulfidotris(S-cysteinyliron)(N3'-histidinoiron)
has_exact_synonym: tris-L-cysteinyl L-N3'-histidino tetrairon tetrasulfide
has_obo_namespace: PSI-MOD
id: MOD:00290
comment: Cross-link 4.

Axiom
annotated source: tris-L-cysteinyl L-N3'-histidino tetrairon tetrasulfide
annotated property: definition
annotated target: A protein modification that effectively converts three L-cysteine residues, an L-histidine residue and a four-iron four-sulfur cluster to tris-L-cysteinyl L-N3'-histidino tetrairon tetrasulfide.
database_cross_reference: PubMed:7854413
database_cross_reference: RESID:AA0285

Axiom
annotated source: tris-L-cysteinyl L-N3'-histidino tetrairon tetrasulfide
annotated property: has_exact_synonym
annotated target: METAL Iron-sulfur (4Fe-4S)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: tris-L-cysteinyl L-N3'-histidino tetrairon tetrasulfide
annotated property: has_exact_synonym
annotated target: METAL Iron-sulfur (4Fe-4S); via pros nitrogen
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: tris-L-cysteinyl L-N3'-histidino tetrairon tetrasulfide
annotated property: has_exact_synonym
annotated target: tetra-mu3-sulfidotris(S-cysteinyliron)(N3'-histidinoiron)
has_synonym_type: Systematic name from RESID

Axiom
annotated source: tris-L-cysteinyl L-N3'-histidino tetrairon tetrasulfide
annotated property: has_exact_synonym
annotated target: tris-L-cysteinyl L-N3'-histidino tetrairon tetrasulfide
has_synonym_type: Name from RESID

tris-L-cysteinyl L-aspartato tetrairon tetrasulfide
type: Class
subclass of: MOD_00739
subclass of: MOD_02066
subclass of: MOD_02067
definition: A protein modification that effectively converts three L-cysteine residues, an L-aspartic acid residue and a four-iron four-sulfur cluster to tris-L-cysteinyl L-aspartato tetrairon tetrasulfide.
diff avg: 347.59
diff formula: C 0 Fe 4 H -4 N 0 O 0 S 4
diff mono: 347.59784
formal charge: 2-
formula: C 13 Fe 4 H 16 N 4 O 6 S 7
mass avg: 772.09
mass mono: 771.65234
origin: C, C, C, D
source: natural
has_exact_synonym: METAL Iron-sulfur (4Fe-4S)
has_exact_synonym: tetra-mu3-sulfidotris(S-cysteinyliron)(O4-aspartatoiron)
has_exact_synonym: tris-L-cysteinyl L-aspartato tetrairon tetrasulfide
has_obo_namespace: PSI-MOD
id: MOD:00291
comment: Cross-link 4.

Axiom
annotated source: tris-L-cysteinyl L-aspartato tetrairon tetrasulfide
annotated property: definition
annotated target: A protein modification that effectively converts three L-cysteine residues, an L-aspartic acid residue and a four-iron four-sulfur cluster to tris-L-cysteinyl L-aspartato tetrairon tetrasulfide.
database_cross_reference: PubMed:7819255
database_cross_reference: PubMed:9283079
database_cross_reference: RESID:AA0286

Axiom
annotated source: tris-L-cysteinyl L-aspartato tetrairon tetrasulfide
annotated property: has_exact_synonym
annotated target: METAL Iron-sulfur (4Fe-4S)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: tris-L-cysteinyl L-aspartato tetrairon tetrasulfide
annotated property: has_exact_synonym
annotated target: tetra-mu3-sulfidotris(S-cysteinyliron)(O4-aspartatoiron)
has_synonym_type: Systematic name from RESID

Axiom
annotated source: tris-L-cysteinyl L-aspartato tetrairon tetrasulfide
annotated property: has_exact_synonym
annotated target: tris-L-cysteinyl L-aspartato tetrairon tetrasulfide
has_synonym_type: Name from RESID

N6-pyruvic acid 2-iminyl-L-lysine
type: Class
subclass of: MOD_00912
subclass of: MOD_01170
definition: A protein modification that effectively converts an L-lysine residue to N6-pyruvic acid 2-iminyl-L-lysine.
diff avg: 70.05
diff formula: C 3 H 2 N 0 O 2
diff mono: 70.00548
formula: C 9 H 14 N 2 O 3
mass avg: 198.22
mass mono: 198.10045
origin: K
source: natural
database_cross_reference: Unimod:422
has_exact_synonym: (2S)-2-amino-6-([1-carboxyethylidene]amino)hexanoic acid
has_exact_synonym: ACT_SITE Schiff-base intermediate with substrate
has_exact_synonym: N6-pyruvic acid 2-iminyl-L-lysine
has_obo_namespace: PSI-MOD
has_related_synonym: N-pyruvic acid 2-iminyl
has_related_synonym: PyruvicAcidIminyl
id: MOD:00292

Axiom
annotated source: N6-pyruvic acid 2-iminyl-L-lysine
annotated property: definition
annotated target: A protein modification that effectively converts an L-lysine residue to N6-pyruvic acid 2-iminyl-L-lysine.
database_cross_reference: PubMed:1463470
database_cross_reference: PubMed:7853400
database_cross_reference: PubMed:9047371
database_cross_reference: RESID:AA0287
database_cross_reference: Unimod:422#K

Axiom
annotated source: N6-pyruvic acid 2-iminyl-L-lysine
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-6-([1-carboxyethylidene]amino)hexanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N6-pyruvic acid 2-iminyl-L-lysine
annotated property: has_exact_synonym
annotated target: ACT_SITE Schiff-base intermediate with substrate
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N6-pyruvic acid 2-iminyl-L-lysine
annotated property: has_exact_synonym
annotated target: N6-pyruvic acid 2-iminyl-L-lysine
has_synonym_type: Name from RESID

Axiom
annotated source: N6-pyruvic acid 2-iminyl-L-lysine
annotated property: has_related_synonym
annotated target: N-pyruvic acid 2-iminyl
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: N6-pyruvic acid 2-iminyl-L-lysine
annotated property: has_related_synonym
annotated target: PyruvicAcidIminyl
has_synonym_type: Agreed label from MS community

tris-L-cysteinyl L-serinyl tetrairon tetrasulfide
type: Class
subclass of: MOD_00739
subclass of: MOD_02067
subclass of: MOD_02072
definition: A protein modification that effectively converts three L-cysteine residues, an L-serine residue and a four-iron four-sulfur cluster to tris-L-cysteinyl L-serinyl tetrairon tetrasulfide.
diff avg: 347.59
diff formula: C 0 Fe 4 H -4 N 0 O 0 S 4
diff mono: 347.59784
formal charge: 2-
formula: C 12 Fe 4 H 16 N 4 O 5 S 7
mass avg: 744.08
mass mono: 743.6574
origin: C, C, C, S
source: hypothetical
has_exact_synonym: tetra-mu3-sulfidotris(S-cysteinyliron)(O3-serinyliron)
has_exact_synonym: tris-L-cysteinyl L-serinyl tetrairon tetrasulfide
has_obo_namespace: PSI-MOD
id: MOD:00293
comment: Cross-link 4.

Axiom
annotated source: tris-L-cysteinyl L-serinyl tetrairon tetrasulfide
annotated property: definition
annotated target: A protein modification that effectively converts three L-cysteine residues, an L-serine residue and a four-iron four-sulfur cluster to tris-L-cysteinyl L-serinyl tetrairon tetrasulfide.
database_cross_reference: RESID:AA0288

Axiom
annotated source: tris-L-cysteinyl L-serinyl tetrairon tetrasulfide
annotated property: has_exact_synonym
annotated target: tetra-mu3-sulfidotris(S-cysteinyliron)(O3-serinyliron)
has_synonym_type: Systematic name from RESID

Axiom
annotated source: tris-L-cysteinyl L-serinyl tetrairon tetrasulfide
annotated property: has_exact_synonym
annotated target: tris-L-cysteinyl L-serinyl tetrairon tetrasulfide
has_synonym_type: Name from RESID

bis-L-cysteinyl L-N3'-histidino L-serinyl tetrairon tetrasulfide
type: Class
subclass of: MOD_00739
subclass of: MOD_02067
subclass of: MOD_02070
subclass of: MOD_02072
definition: A protein modification that effectively converts two L-cysteine residues, an L-histidine residues, an L-serine residue and a four-iron four-sulfur cluster to bis-L-cysteinyl L-N3'-histidino L-serinyl tetrairon tetrasulfide.
diff avg: 347.59
diff formula: C 0 Fe 4 H -4 N 0 O 0 S 4
diff mono: 347.59784
formal charge: 2-
formula: C 15 Fe 4 H 18 N 6 O 5 S 6
mass avg: 778.09
mass mono: 777.70715
origin: C, C, H, S
source: hypothetical
has_exact_synonym: METAL Iron-sulfur (4Fe-4S)
has_exact_synonym: METAL Iron-sulfur (4Fe-4S); via pros nitrogen
has_exact_synonym: bis-L-cysteinyl L-N3'-histidino L-serinyl tetrairon tetrasulfide
has_exact_synonym: tetra-mu3-sulfidobis(S-cysteinyliron)(N3'-histidinoiron)(O3-serinyliron)
has_obo_namespace: PSI-MOD
id: MOD:00294
comment: Cross-link 4.

Axiom
annotated source: bis-L-cysteinyl L-N3'-histidino L-serinyl tetrairon tetrasulfide
annotated property: definition
annotated target: A protein modification that effectively converts two L-cysteine residues, an L-histidine residues, an L-serine residue and a four-iron four-sulfur cluster to bis-L-cysteinyl L-N3'-histidino L-serinyl tetrairon tetrasulfide.
database_cross_reference: RESID:AA0289

Axiom
annotated source: bis-L-cysteinyl L-N3'-histidino L-serinyl tetrairon tetrasulfide
annotated property: has_exact_synonym
annotated target: METAL Iron-sulfur (4Fe-4S)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: bis-L-cysteinyl L-N3'-histidino L-serinyl tetrairon tetrasulfide
annotated property: has_exact_synonym
annotated target: METAL Iron-sulfur (4Fe-4S); via pros nitrogen
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: bis-L-cysteinyl L-N3'-histidino L-serinyl tetrairon tetrasulfide
annotated property: has_exact_synonym
annotated target: bis-L-cysteinyl L-N3'-histidino L-serinyl tetrairon tetrasulfide
has_synonym_type: Name from RESID

Axiom
annotated source: bis-L-cysteinyl L-N3'-histidino L-serinyl tetrairon tetrasulfide
annotated property: has_exact_synonym
annotated target: tetra-mu3-sulfidobis(S-cysteinyliron)(N3'-histidinoiron)(O3-serinyliron)
has_synonym_type: Systematic name from RESID

O-octanoyl-L-serine
type: Class
subclass of: MOD_00669
subclass of: MOD_02003
definition: A protein modification that effectively converts an L-serine residue to O-octanoyl-L-serine.
diff avg: 126.2
diff formula: C 8 H 14 N 0 O 1
diff mono: 126.10446
formula: C 11 H 19 N 1 O 3
mass avg: 213.28
mass mono: 213.13649
origin: S
source: natural
database_cross_reference: Unimod:426
database_cross_reference: uniprot.ptm:PTM-0239
has_exact_synonym: (2S)-2-amino-3-(octanoyloxy)propanoic acid
has_exact_synonym: L-serine octanoate ester
has_exact_synonym: LIPID O-octanoyl serine
has_exact_synonym: O-octanoyl-L-serine
has_exact_synonym: O-octanoylated L-serine
has_exact_synonym: O3-octanoyl-L-serine
has_exact_synonym: OOctSer
has_obo_namespace: PSI-MOD
has_related_synonym: Octanoyl
has_related_synonym: octanoyl
id: MOD:00295
in_subset: PSI-MOD-slim

Axiom
annotated source: O-octanoyl-L-serine
annotated property: definition
annotated target: A protein modification that effectively converts an L-serine residue to O-octanoyl-L-serine.
database_cross_reference: PubMed:10604470
database_cross_reference: PubMed:12716131
database_cross_reference: RESID:AA0290
database_cross_reference: Unimod:426#S

Axiom
annotated source: O-octanoyl-L-serine
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-3-(octanoyloxy)propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: O-octanoyl-L-serine
annotated property: has_exact_synonym
annotated target: L-serine octanoate ester
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-octanoyl-L-serine
annotated property: has_exact_synonym
annotated target: LIPID O-octanoyl serine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: O-octanoyl-L-serine
annotated property: has_exact_synonym
annotated target: O-octanoyl-L-serine
has_synonym_type: Name from RESID

Axiom
annotated source: O-octanoyl-L-serine
annotated property: has_exact_synonym
annotated target: O-octanoylated L-serine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: O-octanoyl-L-serine
annotated property: has_exact_synonym
annotated target: O3-octanoyl-L-serine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-octanoyl-L-serine
annotated property: has_exact_synonym
annotated target: OOctSer
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: O-octanoyl-L-serine
annotated property: has_related_synonym
annotated target: Octanoyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: O-octanoyl-L-serine
annotated property: has_related_synonym
annotated target: octanoyl
has_synonym_type: Description (full_name) from Unimod

O-D-glucuronosyl-L-serine
type: Class
subclass of: N-glucuronylated residue
subclass of: MOD_00916
definition: A protein modification that effectively converts an L-serine residue to O-D-glucuronosyl-L-serine.
diff avg: 176.12
diff formula: C 6 H 8 N 0 O 6
diff mono: 176.03209
formula: C 9 H 13 N 1 O 8
mass avg: 263.2
mass mono: 263.06412
origin: S
source: natural
database_cross_reference: Unimod:54
database_cross_reference: uniprot.ptm:PTM-0577
has_exact_synonym: (2S)-2-amino-3-(beta-D-glucopyranuronosyl)propanoic acid
has_exact_synonym: CARBOHYD O-linked (GlcA) serine
has_exact_synonym: O-D-glucuronosyl-L-serine
has_exact_synonym: O3-D-glucuronosyl-L-serine
has_obo_namespace: PSI-MOD
has_related_synonym: Glucuronyl
has_related_synonym: N-glucuronylation
id: MOD:00296
in_subset: PSI-MOD-slim

Axiom
annotated source: O-D-glucuronosyl-L-serine
annotated property: definition
annotated target: A protein modification that effectively converts an L-serine residue to O-D-glucuronosyl-L-serine.
database_cross_reference: PubMed:10858503
database_cross_reference: PubMed:12716131
database_cross_reference: PubMed:7398618
database_cross_reference: RESID:AA0291
database_cross_reference: Unimod:54#S

Axiom
annotated source: O-D-glucuronosyl-L-serine
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-3-(beta-D-glucopyranuronosyl)propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: O-D-glucuronosyl-L-serine
annotated property: has_exact_synonym
annotated target: CARBOHYD O-linked (GlcA) serine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: O-D-glucuronosyl-L-serine
annotated property: has_exact_synonym
annotated target: O-D-glucuronosyl-L-serine
has_synonym_type: Name from RESID

Axiom
annotated source: O-D-glucuronosyl-L-serine
annotated property: has_exact_synonym
annotated target: O3-D-glucuronosyl-L-serine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-D-glucuronosyl-L-serine
annotated property: has_related_synonym
annotated target: Glucuronyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: O-D-glucuronosyl-L-serine
annotated property: has_related_synonym
annotated target: N-glucuronylation
has_synonym_type: Description (full_name) from Unimod

tris-L-cysteinyl L-cysteine persulfido bis-L-glutamato L-histidino nickel triiron disulfide trioxide
type: Class
subclass of: MOD_00739
subclass of: MOD_00741
subclass of: MOD_02067
subclass of: MOD_02068
subclass of: MOD_02070
definition: A protein modification that effectively converts four L-cysteine residues, two L-glutamic acid residues, an L-histidine residue and a three-iron three-sulfur three-oxygen cluster to tris-L-cysteinyl L-cysteine persulfido bis-L-glutamato L-histidino nickel triiron disulfide trioxide.
diff avg: 363.35
diff formula: C 0 Fe 3 H -7 N 0 Ni 1 O 3 S 3
diff mono: 362.58633
formula: C 28 Fe 3 H 34 N 9 Ni 1 O 14 S 7
mass avg: 1171.28
mass mono: 1169.7672
origin: C, C, C, C, E, E, H
source: artifact
has_exact_synonym: Ni-3Fe-2S-3O cluster
has_exact_synonym: carbon monoxide dehydrogenase nickel-iron cofactor
has_exact_synonym: hybrid nickel-triiron cluster
has_exact_synonym: mu-1:2kappaO-oxido-mu-1:3kappaO-oxido-mu-2:4kappaO-oxido-mu-3:4kappaS-sulfido-mu3-2:3:4kappaS-sulfido-S-cysteinyl-N1'-histidino-O5-glutamato 1-iron-S5-cysteine persulfido-O5-glutamato 2-nickel-3,4-bis-(S-cysteinyl iron)
has_exact_synonym: tris-L-cysteinyl L-cysteine persulfido bis-L-glutamato L-histidino nickel triiron disulfide trioxide
has_obo_namespace: PSI-MOD
id: MOD:00297
comment: Cross-link 7; secondary to RESID:AA0269. This is a deprecated entry in RESID. It probably does not occur naturally [JSG].

Axiom
annotated source: tris-L-cysteinyl L-cysteine persulfido bis-L-glutamato L-histidino nickel triiron disulfide trioxide
annotated property: definition
annotated target: A protein modification that effectively converts four L-cysteine residues, two L-glutamic acid residues, an L-histidine residue and a three-iron three-sulfur three-oxygen cluster to tris-L-cysteinyl L-cysteine persulfido bis-L-glutamato L-histidino nickel triiron disulfide trioxide.
database_cross_reference: RESID:AA0292

Axiom
annotated source: tris-L-cysteinyl L-cysteine persulfido bis-L-glutamato L-histidino nickel triiron disulfide trioxide
annotated property: has_exact_synonym
annotated target: Ni-3Fe-2S-3O cluster
has_synonym_type: Alternate name from RESID

Axiom
annotated source: tris-L-cysteinyl L-cysteine persulfido bis-L-glutamato L-histidino nickel triiron disulfide trioxide
annotated property: has_exact_synonym
annotated target: carbon monoxide dehydrogenase nickel-iron cofactor
has_synonym_type: Alternate name from RESID

Axiom
annotated source: tris-L-cysteinyl L-cysteine persulfido bis-L-glutamato L-histidino nickel triiron disulfide trioxide
annotated property: has_exact_synonym
annotated target: hybrid nickel-triiron cluster
has_synonym_type: Alternate name from RESID

Axiom
annotated source: tris-L-cysteinyl L-cysteine persulfido bis-L-glutamato L-histidino nickel triiron disulfide trioxide
annotated property: has_exact_synonym
annotated target: mu-1:2kappaO-oxido-mu-1:3kappaO-oxido-mu-2:4kappaO-oxido-mu-3:4kappaS-sulfido-mu3-2:3:4kappaS-sulfido-S-cysteinyl-N1'-histidino-O5-glutamato 1-iron-S5-cysteine persulfido-O5-glutamato 2-nickel-3,4-bis-(S-cysteinyl iron)
has_synonym_type: Systematic name from RESID

Axiom
annotated source: tris-L-cysteinyl L-cysteine persulfido bis-L-glutamato L-histidino nickel triiron disulfide trioxide
annotated property: has_exact_synonym
annotated target: tris-L-cysteinyl L-cysteine persulfido bis-L-glutamato L-histidino nickel triiron disulfide trioxide
has_synonym_type: Name from RESID

tris-L-cysteinyl L-cysteine persulfido L-glutamato L-histidino L-serinyl nickel triiron disulfide trioxide
type: Class
subclass of: MOD_00739
subclass of: MOD_00741
subclass of: MOD_02067
subclass of: MOD_02068
subclass of: MOD_02070
subclass of: MOD_02072
definition: A protein modification that effectively converts four L-cysteine residues, an L-glutamic acid residue, an L-histidine residue, an L-serine residue and a one-nickel three-iron three-sulfur three-oxygen cluster to tris-L-cysteinyl L-cysteine persulfido L-glutamato L-histidino L-serinyl nickel triiron disulfide trioxide.
diff avg: 363.35
diff formula: C 0 Fe 3 H -7 N 0 Ni 1 O 3 S 3
diff mono: 362.58633
formula: C 26 Fe 3 H 32 N 9 Ni 1 O 13 S 7
mass avg: 1129.24
mass mono: 1127.7566
origin: C, C, C, C, E, H, S
source: artifact
has_exact_synonym: Ni-3Fe-2S-3O cluster
has_exact_synonym: carbon monoxide dehydrogenase nickel-iron cofactor
has_exact_synonym: hybrid nickel-triiron cluster
has_exact_synonym: mu-1:2kappaO-oxido-mu-1:3kappaO-oxido-mu-2:4kappaO-oxido-mu-3:4kappaS-sulfido-mu3-2:3:4kappaS-sulfido-S-cysteinyl-N1'-histidino-O5-glutamato 1-iron-S5-cysteine persulfido-O3-serinyl 2-nickel-3,4-bis-(S-cysteinyl iron)
has_exact_synonym: tris-L-cysteinyl L-cysteine persulfido L-glutamato L-histidino L-serinyl nickel triiron disulfide trioxide
has_obo_namespace: PSI-MOD
id: MOD:00298
comment: Cross-link 7; secondary to RESID:AA0269. This is a deprecated entry in RESID. It probably does not occur naturally [JSG].

Axiom
annotated source: tris-L-cysteinyl L-cysteine persulfido L-glutamato L-histidino L-serinyl nickel triiron disulfide trioxide
annotated property: definition
annotated target: A protein modification that effectively converts four L-cysteine residues, an L-glutamic acid residue, an L-histidine residue, an L-serine residue and a one-nickel three-iron three-sulfur three-oxygen cluster to tris-L-cysteinyl L-cysteine persulfido L-glutamato L-histidino L-serinyl nickel triiron disulfide trioxide.
database_cross_reference: PubMed:2550436
database_cross_reference: RESID:AA0293

Axiom
annotated source: tris-L-cysteinyl L-cysteine persulfido L-glutamato L-histidino L-serinyl nickel triiron disulfide trioxide
annotated property: has_exact_synonym
annotated target: Ni-3Fe-2S-3O cluster
has_synonym_type: Alternate name from RESID

Axiom
annotated source: tris-L-cysteinyl L-cysteine persulfido L-glutamato L-histidino L-serinyl nickel triiron disulfide trioxide
annotated property: has_exact_synonym
annotated target: carbon monoxide dehydrogenase nickel-iron cofactor
has_synonym_type: Alternate name from RESID

Axiom
annotated source: tris-L-cysteinyl L-cysteine persulfido L-glutamato L-histidino L-serinyl nickel triiron disulfide trioxide
annotated property: has_exact_synonym
annotated target: hybrid nickel-triiron cluster
has_synonym_type: Alternate name from RESID

Axiom
annotated source: tris-L-cysteinyl L-cysteine persulfido L-glutamato L-histidino L-serinyl nickel triiron disulfide trioxide
annotated property: has_exact_synonym
annotated target: mu-1:2kappaO-oxido-mu-1:3kappaO-oxido-mu-2:4kappaO-oxido-mu-3:4kappaS-sulfido-mu3-2:3:4kappaS-sulfido-S-cysteinyl-N1'-histidino-O5-glutamato 1-iron-S5-cysteine persulfido-O3-serinyl 2-nickel-3,4-bis-(S-cysteinyl iron)
has_synonym_type: Systematic name from RESID

Axiom
annotated source: tris-L-cysteinyl L-cysteine persulfido L-glutamato L-histidino L-serinyl nickel triiron disulfide trioxide
annotated property: has_exact_synonym
annotated target: tris-L-cysteinyl L-cysteine persulfido L-glutamato L-histidino L-serinyl nickel triiron disulfide trioxide
has_synonym_type: Name from RESID

N6-(L-isoaspartyl)-L-lysine (Asn)
type: Class
subclass of: MOD_00946
subclass of: MOD_01929
subclass of: MOD_02042
definition: A protein modification that effectively crosslinks an L-asparagine residue and an L-lysine residue by an isopeptide bond with the formation of N6-(L-isoaspartyl)-L-lysine and the release of ammonia.
diff avg: -17.03
diff formula: C 0 H -3 N -1 O 0
diff mono: -17.026548
formula: C 10 H 15 N 3 O 3
mass avg: 225.25
mass mono: 225.11134
origin: K, N
source: natural
database_cross_reference: uniprot.ptm:PTM-0153
has_exact_synonym: (2S)-2-amino-6-([(3S)-3-amino-3-carboxypropanoyl]amino)hexanoic acid
has_exact_synonym: CROSSLNK Isoaspartyl lysine isopeptide (Lys-Asn)
has_exact_synonym: N(epsilon)-(beta-aspartyl)lysine
has_exact_synonym: N-(beta-Aspartyl)-Lysine (Crosslink)
has_exact_synonym: N6-(L-isoaspartyl)-L-lysine
has_exact_synonym: XLNK-4Asp-N6Lys(Asn)
has_exact_synonym: beta-(N6-lysyl)aspartyl acid
has_exact_synonym: isoaspartyl N6-lysine
has_obo_namespace: PSI-MOD
id: MOD:00299
comment: Cross-link 2.

Axiom
annotated source: N6-(L-isoaspartyl)-L-lysine (Asn)
annotated property: definition
annotated target: A protein modification that effectively crosslinks an L-asparagine residue and an L-lysine residue by an isopeptide bond with the formation of N6-(L-isoaspartyl)-L-lysine and the release of ammonia.
database_cross_reference: ChEBI:21862
database_cross_reference: DeltaMass:0
database_cross_reference: PubMed:11000116
database_cross_reference: PubMed:6503713
database_cross_reference: RESID:AA0294

Axiom
annotated source: N6-(L-isoaspartyl)-L-lysine (Asn)
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-6-([(3S)-3-amino-3-carboxypropanoyl]amino)hexanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N6-(L-isoaspartyl)-L-lysine (Asn)
annotated property: has_exact_synonym
annotated target: CROSSLNK Isoaspartyl lysine isopeptide (Lys-Asn)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N6-(L-isoaspartyl)-L-lysine (Asn)
annotated property: has_exact_synonym
annotated target: N(epsilon)-(beta-aspartyl)lysine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N6-(L-isoaspartyl)-L-lysine (Asn)
annotated property: has_exact_synonym
annotated target: N-(beta-Aspartyl)-Lysine (Crosslink)
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: N6-(L-isoaspartyl)-L-lysine (Asn)
annotated property: has_exact_synonym
annotated target: N6-(L-isoaspartyl)-L-lysine
has_synonym_type: Name from RESID

Axiom
annotated source: N6-(L-isoaspartyl)-L-lysine (Asn)
annotated property: has_exact_synonym
annotated target: XLNK-4Asp-N6Lys(Asn)
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: N6-(L-isoaspartyl)-L-lysine (Asn)
annotated property: has_exact_synonym
annotated target: beta-(N6-lysyl)aspartyl acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N6-(L-isoaspartyl)-L-lysine (Asn)
annotated property: has_exact_synonym
annotated target: isoaspartyl N6-lysine
has_synonym_type: Alternate name from RESID

L-glutamyl-5-poly(ADP-ribose)
type: Class
subclass of: MOD_00906
subclass of: MOD_02087
definition: A protein modification that effectively converts an L-glutamic acid residue to L-glutamyl-5-poly(ADP-ribose).
origin: E
source: natural
database_cross_reference: Unimod:213
has_exact_synonym: (S)-2-amino-5-poly[2'-adenosine 5'-(trihydrogen diphosphate) 5'->5'-ester with 1alpha-D-ribofuranosyl]oxy-5-oxopentanoic acid
has_exact_synonym: L-glutamyl-5-poly(ADP-ribose)
has_exact_synonym: L-isoglutamyl-poly(ADP-ribose)
has_exact_synonym: MOD_RES PolyADP-ribosyl glutamic acid
has_exact_synonym: O-ADP-ribosylation (on Glutamate or C terminus)
has_obo_namespace: PSI-MOD
has_related_synonym: ADP Ribose addition
has_related_synonym: ADP-Ribosyl
id: MOD:00300

Axiom
annotated source: L-glutamyl-5-poly(ADP-ribose)
annotated property: definition
annotated target: A protein modification that effectively converts an L-glutamic acid residue to L-glutamyl-5-poly(ADP-ribose).
database_cross_reference: DeltaMass:0
database_cross_reference: PubMed:11246023
database_cross_reference: PubMed:15842200
database_cross_reference: PubMed:8533153
database_cross_reference: RESID:AA0295
database_cross_reference: Unimod:213#E

Axiom
annotated source: L-glutamyl-5-poly(ADP-ribose)
annotated property: has_exact_synonym
annotated target: (S)-2-amino-5-poly[2'-adenosine 5'-(trihydrogen diphosphate) 5'->5'-ester with 1alpha-D-ribofuranosyl]oxy-5-oxopentanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-glutamyl-5-poly(ADP-ribose)
annotated property: has_exact_synonym
annotated target: L-glutamyl-5-poly(ADP-ribose)
has_synonym_type: Name from RESID

Axiom
annotated source: L-glutamyl-5-poly(ADP-ribose)
annotated property: has_exact_synonym
annotated target: L-isoglutamyl-poly(ADP-ribose)
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-glutamyl-5-poly(ADP-ribose)
annotated property: has_exact_synonym
annotated target: MOD_RES PolyADP-ribosyl glutamic acid
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-glutamyl-5-poly(ADP-ribose)
annotated property: has_exact_synonym
annotated target: O-ADP-ribosylation (on Glutamate or C terminus)
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: L-glutamyl-5-poly(ADP-ribose)
annotated property: has_related_synonym
annotated target: ADP Ribose addition
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: L-glutamyl-5-poly(ADP-ribose)
annotated property: has_related_synonym
annotated target: ADP-Ribosyl
has_synonym_type: Agreed label from MS community

O-(N-acetylglucosamine-1-phosphoryl)-L-serine
type: Class
subclass of: MOD_00916
subclass of: MOD_01804
definition: A protein modification that effectively converts an L-serine residue to O-(N-acetylglucosamine-1-phosphoryl)-L-serine.
diff avg: 283.17
diff formula: C 8 H 14 N 1 O 8 P 1
diff mono: 283.04572
formula: C 11 H 19 N 2 O 10 P 1
mass avg: 370.25
mass mono: 370.07773
origin: S
source: natural
database_cross_reference: Unimod:428
database_cross_reference: uniprot.ptm:PTM-0586
has_exact_synonym: (2S)-2-amino-3-[([(2-acetamido-2-deoxy-alpha-D-glucopyranosyl)oxy][hydroxy]phosphoryl)oxy]propanoic acid
has_exact_synonym: CARBOHYD O-linked (GalNAcP) serine
has_exact_synonym: O-(N-acetylglucosamine-1-phosphoryl)-L-serine
has_exact_synonym: O-GlcNAc-1-phosphorylation (of Serine)
has_exact_synonym: O-beta(N-acetyl-glucosamine-alpha1-phosphate)serine
has_exact_synonym: O3-(N-acetylglucosamine-1-phosphoryl)-L-serine
has_exact_synonym: O3-L-serine 2-(acetylamino)-2-deoxy-D-glucopyranose 1-phosphodiester
has_obo_namespace: PSI-MOD
has_related_synonym: N-acetylglucosamine-1-phosphoryl
has_related_synonym: PhosphoHexNAc
id: MOD:00301

Axiom
annotated source: O-(N-acetylglucosamine-1-phosphoryl)-L-serine
annotated property: definition
annotated target: A protein modification that effectively converts an L-serine residue to O-(N-acetylglucosamine-1-phosphoryl)-L-serine.
database_cross_reference: DeltaMass:0
database_cross_reference: PubMed:6438439
database_cross_reference: PubMed:6993483
database_cross_reference: PubMed:8631906
database_cross_reference: RESID:AA0296
database_cross_reference: Unimod:428

Axiom
annotated source: O-(N-acetylglucosamine-1-phosphoryl)-L-serine
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-3-[([(2-acetamido-2-deoxy-alpha-D-glucopyranosyl)oxy][hydroxy]phosphoryl)oxy]propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: O-(N-acetylglucosamine-1-phosphoryl)-L-serine
annotated property: has_exact_synonym
annotated target: CARBOHYD O-linked (GalNAcP) serine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: O-(N-acetylglucosamine-1-phosphoryl)-L-serine
annotated property: has_exact_synonym
annotated target: O-(N-acetylglucosamine-1-phosphoryl)-L-serine
has_synonym_type: Name from RESID

Axiom
annotated source: O-(N-acetylglucosamine-1-phosphoryl)-L-serine
annotated property: has_exact_synonym
annotated target: O-GlcNAc-1-phosphorylation (of Serine)
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: O-(N-acetylglucosamine-1-phosphoryl)-L-serine
annotated property: has_exact_synonym
annotated target: O-beta(N-acetyl-glucosamine-alpha1-phosphate)serine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-(N-acetylglucosamine-1-phosphoryl)-L-serine
annotated property: has_exact_synonym
annotated target: O3-(N-acetylglucosamine-1-phosphoryl)-L-serine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-(N-acetylglucosamine-1-phosphoryl)-L-serine
annotated property: has_exact_synonym
annotated target: O3-L-serine 2-(acetylamino)-2-deoxy-D-glucopyranose 1-phosphodiester
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-(N-acetylglucosamine-1-phosphoryl)-L-serine
annotated property: has_related_synonym
annotated target: N-acetylglucosamine-1-phosphoryl
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: O-(N-acetylglucosamine-1-phosphoryl)-L-serine
annotated property: has_related_synonym
annotated target: PhosphoHexNAc
has_synonym_type: Agreed label from MS community

O-(phosphoglycosyl-D-mannose-1-phosphoryl)-L-serine
type: Class
subclass of: MOD_00916
subclass of: MOD_01804
definition: A protein modification that effectively converts an L-serine residue to O-(phosphoglycosyl-D-mannose-1-phosphoryl)-L-serine.
diff avg: 242.12
diff formula: C 6 H 11 N 0 O 8 P 1
diff mono: 242.01915
formula: C 9 H 16 N 1 O 10 P 1
mass avg: 329.2
mass mono: 329.05118
origin: S
source: natural
database_cross_reference: Unimod:429
database_cross_reference: uniprot.ptm:PTM-0594
has_exact_synonym: CARBOHYD O-linked (Man1P) serine
has_exact_synonym: O-(D-mannose-1-phosphoryl)-L-serine
has_exact_synonym: O-(alpha-D-mannosyl-1-phosphoryl)-L-serine
has_exact_synonym: O-[alpha-D-mannopyranosyloxy(hydroxy)phosphoryl]-L-serine
has_exact_synonym: O3-(D-mannose-1-phosphoryl)-L-serine
has_exact_synonym: O3-L-serine alpha-D-mannopyranose 1-phosphodiester
has_obo_namespace: PSI-MOD
has_related_synonym: PhosphoHex
has_related_synonym: phosphoglycosyl-D-mannose-1-phosphoryl
id: MOD:00302

Axiom
annotated source: O-(phosphoglycosyl-D-mannose-1-phosphoryl)-L-serine
annotated property: definition
annotated target: A protein modification that effectively converts an L-serine residue to O-(phosphoglycosyl-D-mannose-1-phosphoryl)-L-serine.
database_cross_reference: PubMed:10037765
database_cross_reference: PubMed:15649890
database_cross_reference: RESID:AA0297
database_cross_reference: Unimod:429

Axiom
annotated source: O-(phosphoglycosyl-D-mannose-1-phosphoryl)-L-serine
annotated property: has_exact_synonym
annotated target: CARBOHYD O-linked (Man1P) serine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: O-(phosphoglycosyl-D-mannose-1-phosphoryl)-L-serine
annotated property: has_exact_synonym
annotated target: O-(D-mannose-1-phosphoryl)-L-serine
has_synonym_type: Name from RESID

Axiom
annotated source: O-(phosphoglycosyl-D-mannose-1-phosphoryl)-L-serine
annotated property: has_exact_synonym
annotated target: O-(alpha-D-mannosyl-1-phosphoryl)-L-serine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-(phosphoglycosyl-D-mannose-1-phosphoryl)-L-serine
annotated property: has_exact_synonym
annotated target: O-[alpha-D-mannopyranosyloxy(hydroxy)phosphoryl]-L-serine
has_synonym_type: Systematic name from RESID

Axiom
annotated source: O-(phosphoglycosyl-D-mannose-1-phosphoryl)-L-serine
annotated property: has_exact_synonym
annotated target: O3-(D-mannose-1-phosphoryl)-L-serine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-(phosphoglycosyl-D-mannose-1-phosphoryl)-L-serine
annotated property: has_exact_synonym
annotated target: O3-L-serine alpha-D-mannopyranose 1-phosphodiester
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-(phosphoglycosyl-D-mannose-1-phosphoryl)-L-serine
annotated property: has_related_synonym
annotated target: PhosphoHex
has_synonym_type: Agreed label from MS community

Axiom
annotated source: O-(phosphoglycosyl-D-mannose-1-phosphoryl)-L-serine
annotated property: has_related_synonym
annotated target: phosphoglycosyl-D-mannose-1-phosphoryl
has_synonym_type: Description (full_name) from Unimod

heptakis-L-histidino tetracopper mu4-sulfide hydroxide
type: Class
subclass of: MOD_00742
subclass of: MOD_00860
subclass of: MOD_02070
definition: A protein modification that effectively converts seven L-histidinine residues and a four-copper one-sulfur one-hydroxide cluster to heptakis-L-histidino tetracopper mu4-sulfide hydroxide.
diff avg: 296.19
diff formula: C 0 Cu 4 H -6 N 0 O 1 S 1
diff mono: 293.63843
formula: C 42 Cu 4 H 43 N 21 O 8 S 1
mass avg: 1256.19
mass mono: 1253.0508
origin: H, H, H, H, H, H, H
source: natural
has_exact_synonym: heptakis-L-histidino tetracopper mu4-sulfide hydroxide
has_exact_synonym: mu4-sulfido bis(bis-N1'-histidino copper)(N1'-histidino-N3'-histidino copper)(N3'-histidino hydroxide copper)
has_exact_synonym: nitrous oxide reductase nosZ CuZ cluster
has_exact_synonym: pentakis-L-N1'-histidino-bis-L-N3'-histidino tetracopper sulfide hydroxide
has_obo_namespace: PSI-MOD
id: MOD:00303
comment: Cross-link 7.

Axiom
annotated source: heptakis-L-histidino tetracopper mu4-sulfide hydroxide
annotated property: definition
annotated target: A protein modification that effectively converts seven L-histidinine residues and a four-copper one-sulfur one-hydroxide cluster to heptakis-L-histidino tetracopper mu4-sulfide hydroxide.
database_cross_reference: PubMed:11024061
database_cross_reference: PubMed:11041839
database_cross_reference: RESID:AA0298

Axiom
annotated source: heptakis-L-histidino tetracopper mu4-sulfide hydroxide
annotated property: has_exact_synonym
annotated target: heptakis-L-histidino tetracopper mu4-sulfide hydroxide
has_synonym_type: Name from RESID

Axiom
annotated source: heptakis-L-histidino tetracopper mu4-sulfide hydroxide
annotated property: has_exact_synonym
annotated target: mu4-sulfido bis(bis-N1'-histidino copper)(N1'-histidino-N3'-histidino copper)(N3'-histidino hydroxide copper)
has_synonym_type: Systematic name from RESID

Axiom
annotated source: heptakis-L-histidino tetracopper mu4-sulfide hydroxide
annotated property: has_exact_synonym
annotated target: nitrous oxide reductase nosZ CuZ cluster
has_synonym_type: Alternate name from RESID

Axiom
annotated source: heptakis-L-histidino tetracopper mu4-sulfide hydroxide
annotated property: has_exact_synonym
annotated target: pentakis-L-N1'-histidino-bis-L-N3'-histidino tetracopper sulfide hydroxide
has_synonym_type: Alternate name from RESID

L-leucine methyl ester
type: Class
subclass of: monomethylated residue
subclass of: MOD_00662
subclass of: MOD_01689
definition: A protein modification that effectively converts an L-leucine residue to L-leucine methyl ester.
diff avg: 14.03
diff formula: C 1 H 2 N 0 O 0
diff mono: 14.01565
formula: C 7 H 14 N 1 O 2
mass avg: 144.19
mass mono: 144.10245
origin: L
source: natural
term spec: C-term
database_cross_reference: Unimod:34
database_cross_reference: uniprot.ptm:PTM-0167
has_exact_synonym: 2-amino-4-methylpentanoic methyl ester
has_exact_synonym: L-leucine methyl ester
has_exact_synonym: MOD_RES Leucine methyl ester
has_exact_synonym: OMeLeu
has_exact_synonym: alpha-aminoisocaproic methyl ester
has_exact_synonym: methyl (2S)-2-amino-4-methylpentanoate
has_exact_synonym: methyl L-leucinate
has_exact_synonym: methyl esterified L-leucine
has_obo_namespace: PSI-MOD
has_related_synonym: Methyl
has_related_synonym: Methylation
id: MOD:00304
in_subset: PSI-MOD-slim
comment: incidental to RESID:AA0039

Axiom
annotated source: L-leucine methyl ester
annotated property: definition
annotated target: A protein modification that effectively converts an L-leucine residue to L-leucine methyl ester.
database_cross_reference: PubMed:10191253
database_cross_reference: PubMed:11875433
database_cross_reference: PubMed:8206937
database_cross_reference: RESID:AA0299
database_cross_reference: Unimod:34#C-term

Axiom
annotated source: L-leucine methyl ester
annotated property: has_exact_synonym
annotated target: 2-amino-4-methylpentanoic methyl ester
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-leucine methyl ester
annotated property: has_exact_synonym
annotated target: L-leucine methyl ester
has_synonym_type: Name from RESID

Axiom
annotated source: L-leucine methyl ester
annotated property: has_exact_synonym
annotated target: MOD_RES Leucine methyl ester
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-leucine methyl ester
annotated property: has_exact_synonym
annotated target: OMeLeu
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-leucine methyl ester
annotated property: has_exact_synonym
annotated target: alpha-aminoisocaproic methyl ester
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-leucine methyl ester
annotated property: has_exact_synonym
annotated target: methyl (2S)-2-amino-4-methylpentanoate
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-leucine methyl ester
annotated property: has_exact_synonym
annotated target: methyl L-leucinate
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-leucine methyl ester
annotated property: has_exact_synonym
annotated target: methyl esterified L-leucine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: L-leucine methyl ester
annotated property: has_related_synonym
annotated target: Methyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: L-leucine methyl ester
annotated property: has_related_synonym
annotated target: Methylation
has_synonym_type: Description (full_name) from Unimod

hexakis-L-cysteinyl L-serinyl octairon heptasulfide
type: Class
subclass of: MOD_00739
subclass of: MOD_02067
subclass of: MOD_02072
definition: A protein modification that effectively converts six L-cysteine residues, an L-serine residue and a eight-iron seven-sulfur cluster to hexakis-L-cysteinyl L-serinyl octairon heptasulfide.
diff avg: 663.12
diff formula: C 0 Fe 8 H -8 N 0 O 0 S 7
diff mono: 663.223
formal charge: 3-
formula: C 21 Fe 8 H 27 N 7 O 8 S 13
mass avg: 1369.03
mass mono: 1368.3102
origin: C, C, C, C, C, C, S
source: natural
has_exact_synonym: Cys6Ser-[8Fe7S]
has_exact_synonym: METAL Iron-sulfur (8Fe-7S)
has_exact_synonym: hexakis-L-cysteinyl L-serinyl octairon heptasulfide
has_exact_synonym: nitrogenase P-cluster
has_obo_namespace: PSI-MOD
id: MOD:00305
comment: Cross-link 7; incidental to RESID:AA0141.

Axiom
annotated source: hexakis-L-cysteinyl L-serinyl octairon heptasulfide
annotated property: definition
annotated target: A protein modification that effectively converts six L-cysteine residues, an L-serine residue and a eight-iron seven-sulfur cluster to hexakis-L-cysteinyl L-serinyl octairon heptasulfide.
database_cross_reference: PubMed:10525412
database_cross_reference: PubMed:12215645
database_cross_reference: PubMed:9063865
database_cross_reference: RESID:AA0300

Axiom
annotated source: hexakis-L-cysteinyl L-serinyl octairon heptasulfide
annotated property: has_exact_synonym
annotated target: Cys6Ser-[8Fe7S]
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: hexakis-L-cysteinyl L-serinyl octairon heptasulfide
annotated property: has_exact_synonym
annotated target: METAL Iron-sulfur (8Fe-7S)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: hexakis-L-cysteinyl L-serinyl octairon heptasulfide
annotated property: has_exact_synonym
annotated target: hexakis-L-cysteinyl L-serinyl octairon heptasulfide
has_synonym_type: Name from RESID

Axiom
annotated source: hexakis-L-cysteinyl L-serinyl octairon heptasulfide
annotated property: has_exact_synonym
annotated target: nitrogenase P-cluster
has_synonym_type: Alternate name from RESID

residues isobaric at 113.084064 Da
type: Class
subclass of: residues isobaric at a resolution below 0.000001 Da
subclass of: residues isobaric at 113.0-113.1 Da
definition: Natural or modified residues with a mass of 113.084064 Da.
diff avg: 0.0
diff formula: C 0 H 0 N 0 O 0
diff mono: 0.0
formula: C 6 H 11 N 1 O 1
mass avg: 113.16
mass mono: 113.08406
origin: X
has_exact_synonym: L-isoleucine or L-leucine
has_exact_synonym: Xle
has_obo_namespace: PSI-MOD
id: MOD:00306
in_subset: PSI-MOD-slim

Axiom
annotated source: residues isobaric at 113.084064 Da
annotated property: definition
annotated target: Natural or modified residues with a mass of 113.084064 Da.
database_cross_reference: PubMed:10523135
database_cross_reference: RESID:AA0301

Axiom
annotated source: residues isobaric at 113.084064 Da
annotated property: has_exact_synonym
annotated target: L-isoleucine or L-leucine
has_synonym_type: Name from RESID

Axiom
annotated source: residues isobaric at 113.084064 Da
annotated property: has_exact_synonym
annotated target: Xle
has_synonym_type: Short label curated by PSI-MOD

L-aspartimide
type: Class
subclass of: cyclized residue
subclass of: MOD_00704
subclass of: MOD_00903
definition: A protein modification that effectively cyclizes an L-asparagine residue to form a carboxyl-terminal L-aspartimide.
diff avg: -18.02
diff formula: C 0 H -2 N 0 O -1
diff mono: -18.010565
formula: C 4 H 5 N 2 O 2
mass avg: 113.1
mass mono: 113.0351
origin: N
source: natural
term spec: C-term
database_cross_reference: Unimod:23
has_exact_synonym: (3S)-3-amino-2,5-pyrrolidinedione
has_exact_synonym: 2-amino-butanimide
has_exact_synonym: ASI
has_exact_synonym: L-2-aminosuccinimide
has_exact_synonym: L-asparaginimide
has_exact_synonym: L-aspartimide
has_exact_synonym: Succinimide formation from asparagine
has_exact_synonym: alpha-aminosuccinimide
has_obo_namespace: PSI-MOD
has_related_synonym: Dehydrated
has_related_synonym: Dehydration
has_related_synonym: L-3-aminosuccinimide
id: MOD:00307
comment: From DeltaMass: Average Mass: -17 Average Mass Change:-17 References:Clarke, S., Lability of Aspargine and Aspartic Acid Residues in Protein and Peptides, in: Stability of Protein Pharmaceuticals : Chemical and Physical Paths of Protein Degradation, Part A (T.J. Ahern and M.C. Manning, eds.), 1992,Plenum Press, New York, pp.1-29Xie, M.; Vander Velde, D.; Morton, M.; Borchardt, R.T.; Schowen,R.L.: pH-Induced Change in the Rate-Determining Step for the Hydrolysis of the Asp/Asn-Derived Cyclic-Imide Intermediate in Protein Degradation. (1996) J. Am. Chem. Soc. 118: 8955-8956.

Axiom
annotated source: L-aspartimide
annotated property: definition
annotated target: A protein modification that effectively cyclizes an L-asparagine residue to form a carboxyl-terminal L-aspartimide.
database_cross_reference: DeltaMass:18
database_cross_reference: PubMed:12771378
database_cross_reference: PubMed:2378679
database_cross_reference: PubMed:7662664
database_cross_reference: PubMed:7988548
database_cross_reference: PubMed:9309583
database_cross_reference: RESID:AA0302
database_cross_reference: Unimod:23#N

Axiom
annotated source: L-aspartimide
annotated property: has_exact_synonym
annotated target: (3S)-3-amino-2,5-pyrrolidinedione
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-aspartimide
annotated property: has_exact_synonym
annotated target: 2-amino-butanimide
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-aspartimide
annotated property: has_exact_synonym
annotated target: ASI
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-aspartimide
annotated property: has_exact_synonym
annotated target: L-2-aminosuccinimide
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-aspartimide
annotated property: has_exact_synonym
annotated target: L-asparaginimide
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-aspartimide
annotated property: has_exact_synonym
annotated target: L-aspartimide
has_synonym_type: Name from RESID

Axiom
annotated source: L-aspartimide
annotated property: has_exact_synonym
annotated target: Succinimide formation from asparagine
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: L-aspartimide
annotated property: has_exact_synonym
annotated target: alpha-aminosuccinimide
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-aspartimide
annotated property: has_related_synonym
annotated target: Dehydrated
has_synonym_type: Interim label from Unimod

Axiom
annotated source: L-aspartimide
annotated property: has_related_synonym
annotated target: Dehydration
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: L-aspartimide
annotated property: has_related_synonym
annotated target: L-3-aminosuccinimide
has_synonym_type: Misnomer tagged alternate name from RESID

L-glutamimide
type: Class
subclass of: cyclized residue
subclass of: MOD_00704
subclass of: MOD_00907
definition: A protein modification that effectively cyclizes an L-glutamine residue to form a carboxyl-terminal L-glutamimide.
diff avg: -18.02
diff formula: C 0 H -2 N 0 O -1
diff mono: -18.010565
formula: C 5 H 7 N 2 O 2
mass avg: 127.12
mass mono: 127.05075
origin: Q
source: hypothetical
term spec: C-term
database_cross_reference: Unimod:23
has_exact_synonym: (3S)-3-aminopiperidine-2,6-dione
has_exact_synonym: 2-aminopentanimide
has_exact_synonym: 3-amino-2,6-piperidinedione
has_exact_synonym: L-glutamimide
has_exact_synonym: alpha-aminoglutarimide
has_obo_namespace: PSI-MOD
has_related_synonym: Dehydrated
has_related_synonym: Dehydration
id: MOD:00308

Axiom
annotated source: L-glutamimide
annotated property: definition
annotated target: A protein modification that effectively cyclizes an L-glutamine residue to form a carboxyl-terminal L-glutamimide.
database_cross_reference: PubMed:12771378
database_cross_reference: PubMed:14593103
database_cross_reference: RESID:AA0303
database_cross_reference: Unimod:23#Q

Axiom
annotated source: L-glutamimide
annotated property: has_exact_synonym
annotated target: (3S)-3-aminopiperidine-2,6-dione
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-glutamimide
annotated property: has_exact_synonym
annotated target: 2-aminopentanimide
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-glutamimide
annotated property: has_exact_synonym
annotated target: 3-amino-2,6-piperidinedione
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-glutamimide
annotated property: has_exact_synonym
annotated target: L-glutamimide
has_synonym_type: Name from RESID

Axiom
annotated source: L-glutamimide
annotated property: has_exact_synonym
annotated target: alpha-aminoglutarimide
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-glutamimide
annotated property: has_related_synonym
annotated target: Dehydrated
has_synonym_type: Interim label from Unimod

Axiom
annotated source: L-glutamimide
annotated property: has_related_synonym
annotated target: Dehydration
has_synonym_type: Description (full_name) from Unimod

L-beta-carboxyaspartic acid
type: Class
subclass of: MOD_00904
subclass of: MOD_01152
definition: A protein modification that effectively converts an L-aspartic acid residue to L-beta-carboxyaspartic acid.
diff avg: 44.01
diff formula: C 1 H 0 N 0 O 2
diff mono: 43.98983
formula: C 5 H 5 N 1 O 5
mass avg: 159.1
mass mono: 159.01677
origin: D
source: hypothetical
database_cross_reference: Unimod:299
has_exact_synonym: (2S)-2-aminoethane-1,1,2-tricarboxylic acid
has_exact_synonym: 2-amino-3-carboxybutanedioic acid
has_exact_synonym: 3-carboxy-L-aspartic acid
has_exact_synonym: 3-carboxyaspartic acid
has_exact_synonym: 3CbxAsp
has_exact_synonym: beta-carboxyaspartic acid
has_exact_synonym: gammacarboxyld
has_obo_namespace: PSI-MOD
has_related_synonym: Carboxy
has_related_synonym: Carboxylation
id: MOD:00309
comment: References to this modification as a gamma-carboxylation are in error [JSG].

Axiom
annotated source: L-beta-carboxyaspartic acid
annotated property: definition
annotated target: A protein modification that effectively converts an L-aspartic acid residue to L-beta-carboxyaspartic acid.
database_cross_reference: OMSSA:47
database_cross_reference: PubMed:6390094
database_cross_reference: PubMed:7138832
database_cross_reference: PubMed:7457858
database_cross_reference: PubMed:8135347
database_cross_reference: RESID:AA0304
database_cross_reference: Unimod:299#D

Axiom
annotated source: L-beta-carboxyaspartic acid
annotated property: has_exact_synonym
annotated target: (2S)-2-aminoethane-1,1,2-tricarboxylic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-beta-carboxyaspartic acid
annotated property: has_exact_synonym
annotated target: 2-amino-3-carboxybutanedioic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-beta-carboxyaspartic acid
annotated property: has_exact_synonym
annotated target: 3-carboxy-L-aspartic acid
has_synonym_type: Name from RESID

Axiom
annotated source: L-beta-carboxyaspartic acid
annotated property: has_exact_synonym
annotated target: 3-carboxyaspartic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-beta-carboxyaspartic acid
annotated property: has_exact_synonym
annotated target: 3CbxAsp
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-beta-carboxyaspartic acid
annotated property: has_exact_synonym
annotated target: beta-carboxyaspartic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-beta-carboxyaspartic acid
annotated property: has_exact_synonym
annotated target: gammacarboxyld
has_synonym_type: Short label from OMSSA

Axiom
annotated source: L-beta-carboxyaspartic acid
annotated property: has_related_synonym
annotated target: Carboxy
has_synonym_type: Agreed label from MS community

Axiom
annotated source: L-beta-carboxyaspartic acid
annotated property: has_related_synonym
annotated target: Carboxy
has_synonym_type: Interim label from Unimod

Axiom
annotated source: L-beta-carboxyaspartic acid
annotated property: has_related_synonym
annotated target: Carboxylation
has_synonym_type: Description (full_name) from Unimod

N5-methyl-L-arginine
type: Class
subclass of: monomethylated L-arginine
subclass of: N-methylated residue
definition: A protein modification that effectively converts an L-arginine residue to N5-methyl-L-arginine.
diff avg: 14.03
diff formula: C 1 H 2 N 0 O 0
diff mono: 14.01565
formula: C 7 H 14 N 4 O 1
mass avg: 170.22
mass mono: 170.11676
origin: R
source: hypothetical
database_cross_reference: uniprot.ptm:PTM-0185
has_exact_synonym: (2S)-2-amino-5-(N-methylcarbamimidamido)pentanoic acid
has_exact_synonym: MOD_RES N5-methylarginine
has_exact_synonym: N5-carbamimidoyl-N5-methyl-L-ornithine
has_exact_synonym: N5-methyl-L-arginine
has_exact_synonym: N5-methylated L-arginine
has_exact_synonym: N5Me1Arg
has_exact_synonym: delta-N-methylarginine
has_obo_namespace: PSI-MOD
has_related_synonym: Methyl
has_related_synonym: Methylation
id: MOD:00310

Axiom
annotated source: N5-methyl-L-arginine
annotated property: definition
annotated target: A protein modification that effectively converts an L-arginine residue to N5-methyl-L-arginine.
database_cross_reference: PubMed:11875433
database_cross_reference: PubMed:9792625
database_cross_reference: PubMed:9873020
database_cross_reference: RESID:AA0305

Axiom
annotated source: N5-methyl-L-arginine
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-5-(N-methylcarbamimidamido)pentanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N5-methyl-L-arginine
annotated property: has_exact_synonym
annotated target: MOD_RES N5-methylarginine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N5-methyl-L-arginine
annotated property: has_exact_synonym
annotated target: N5-carbamimidoyl-N5-methyl-L-ornithine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N5-methyl-L-arginine
annotated property: has_exact_synonym
annotated target: N5-methyl-L-arginine
has_synonym_type: Name from RESID

Axiom
annotated source: N5-methyl-L-arginine
annotated property: has_exact_synonym
annotated target: N5-methylated L-arginine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: N5-methyl-L-arginine
annotated property: has_exact_synonym
annotated target: N5Me1Arg
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: N5-methyl-L-arginine
annotated property: has_exact_synonym
annotated target: delta-N-methylarginine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N5-methyl-L-arginine
annotated property: has_related_synonym
annotated target: Methyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: N5-methyl-L-arginine
annotated property: has_related_synonym
annotated target: Methylation
has_synonym_type: Description (full_name) from Unimod

L-cysteine coenzyme A disulfide
type: Class
subclass of: MOD_00861
subclass of: MOD_00905
subclass of: MOD_01862
definition: A protein modification that effectively converts an L-cysteine residue to L-cysteine coenzyme A disulfide.
diff avg: 765.52
diff formula: C 21 H 34 N 7 O 16 P 3 S 1
diff mono: 765.09955
formula: C 24 H 39 N 8 O 17 P 3 S 2
mass avg: 868.66
mass mono: 868.10876
origin: C
source: hypothetical
database_cross_reference: Unimod:281
has_exact_synonym: (2R)-2-amino-3-(2-((3-(((2R)-2,4-dihydroxy-3,3-dimethyl-1-oxobutyl)amino)-1-oxopropyl)amino)ethyl)dithio-propanoic acid 4'-ester with adenosine 5'-(trihydrogen diphosphate) 3'-(dihydrogen phosphate)
has_exact_synonym: L-cysteine coenzyme A disulfide
has_exact_synonym: SCoACys
has_exact_synonym: coenzyme A L-cysteine mixed disulfide
has_obo_namespace: PSI-MOD
has_related_synonym: CoenzymeA
has_related_synonym: Cysteine modified Coenzyme A
id: MOD:00311
comment: DeltaMass gives no formula with mass as 454.

Axiom
annotated source: L-cysteine coenzyme A disulfide
annotated property: definition
annotated target: A protein modification that effectively converts an L-cysteine residue to L-cysteine coenzyme A disulfide.
database_cross_reference: DeltaMass:0
database_cross_reference: PubMed:1734967
database_cross_reference: RESID:AA0306
database_cross_reference: Unimod:281#C

Axiom
annotated source: L-cysteine coenzyme A disulfide
annotated property: has_exact_synonym
annotated target: (2R)-2-amino-3-(2-((3-(((2R)-2,4-dihydroxy-3,3-dimethyl-1-oxobutyl)amino)-1-oxopropyl)amino)ethyl)dithio-propanoic acid 4'-ester with adenosine 5'-(trihydrogen diphosphate) 3'-(dihydrogen phosphate)
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-cysteine coenzyme A disulfide
annotated property: has_exact_synonym
annotated target: L-cysteine coenzyme A disulfide
has_synonym_type: Name from RESID

Axiom
annotated source: L-cysteine coenzyme A disulfide
annotated property: has_exact_synonym
annotated target: SCoACys
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-cysteine coenzyme A disulfide
annotated property: has_exact_synonym
annotated target: coenzyme A L-cysteine mixed disulfide
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteine coenzyme A disulfide
annotated property: has_related_synonym
annotated target: CoenzymeA
has_synonym_type: Agreed label from MS community

Axiom
annotated source: L-cysteine coenzyme A disulfide
annotated property: has_related_synonym
annotated target: Cysteine modified Coenzyme A
has_synonym_type: Description (full_name) from Unimod

S-myristoyl-L-cysteine
type: Class
subclass of: MOD_00655
subclass of: MOD_00905
definition: A protein modification that effectively converts an L-cysteine residue to S-myristoyl-L-cysteine.
diff avg: 210.36
diff formula: C 14 H 26 N 0 O 1 S 0
diff mono: 210.19836
formula: C 17 H 31 N 1 O 2 S 1
mass avg: 313.5
mass mono: 313.20755
origin: C
source: hypothetical
database_cross_reference: Unimod:45
has_exact_synonym: (R)-2-amino-3-(tetradecanoylsulfanyl)propanoic acid
has_exact_synonym: LIPID S-myristoyl cysteine
has_exact_synonym: S-(C14:1 aliphatic acyl)cysteine
has_exact_synonym: S-myristoyl-L-cysteine
has_exact_synonym: S-myristoylated L-cysteine
has_exact_synonym: SMyrCys
has_exact_synonym: tetradecanoate cysteine thioester
has_obo_namespace: PSI-MOD
has_related_synonym: Myristoyl
has_related_synonym: Myristoylation
id: MOD:00312

Axiom
annotated source: S-myristoyl-L-cysteine
annotated property: definition
annotated target: A protein modification that effectively converts an L-cysteine residue to S-myristoyl-L-cysteine.
database_cross_reference: PubMed:10026218
database_cross_reference: PubMed:10080938
database_cross_reference: PubMed:8824274
database_cross_reference: RESID:AA0307
database_cross_reference: Unimod:45#C

Axiom
annotated source: S-myristoyl-L-cysteine
annotated property: has_exact_synonym
annotated target: (R)-2-amino-3-(tetradecanoylsulfanyl)propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: S-myristoyl-L-cysteine
annotated property: has_exact_synonym
annotated target: LIPID S-myristoyl cysteine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: S-myristoyl-L-cysteine
annotated property: has_exact_synonym
annotated target: S-(C14:1 aliphatic acyl)cysteine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: S-myristoyl-L-cysteine
annotated property: has_exact_synonym
annotated target: S-myristoyl-L-cysteine
has_synonym_type: Name from RESID

Axiom
annotated source: S-myristoyl-L-cysteine
annotated property: has_exact_synonym
annotated target: S-myristoylated L-cysteine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: S-myristoyl-L-cysteine
annotated property: has_exact_synonym
annotated target: SMyrCys
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: S-myristoyl-L-cysteine
annotated property: has_exact_synonym
annotated target: tetradecanoate cysteine thioester
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-myristoyl-L-cysteine
annotated property: has_related_synonym
annotated target: Myristoyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: S-myristoyl-L-cysteine
annotated property: has_related_synonym
annotated target: Myristoylation
has_synonym_type: Description (full_name) from Unimod

S-palmitoleyl-L-cysteine
type: Class
subclass of: MOD_00905
subclass of: MOD_02002
definition: A protein modification that effectively converts an L-cysteine residue to S-palmitoleyl-L-cysteine.
diff avg: 236.4
diff formula: C 16 H 28 N 0 O 1 S 0
diff mono: 236.21402
formula: C 19 H 33 N 1 O 2 S 1
mass avg: 339.54
mass mono: 339.2232
origin: C
source: hypothetical
database_cross_reference: Unimod:431
database_cross_reference: uniprot.ptm:PTM-0645
has_exact_synonym: (R)-2-amino-3-((Z)-9-hexadecenoylsulfanyl)propanoic acid
has_exact_synonym: S-palmitoleyl-L-cysteine
has_exact_synonym: S-palmitoleylated L-cysteine
has_exact_synonym: SPamD1Cys
has_exact_synonym: cis-9-hexadecenoate cysteine thioester
has_exact_synonym: mod187
has_obo_namespace: PSI-MOD
has_related_synonym: Palmitoleyl
has_related_synonym: palmitoleyl
id: MOD:00313

Axiom
annotated source: S-palmitoleyl-L-cysteine
annotated property: definition
annotated target: A protein modification that effectively converts an L-cysteine residue to S-palmitoleyl-L-cysteine.
database_cross_reference: OMSSA:187
database_cross_reference: PubMed:8294460
database_cross_reference: RESID:AA0308
database_cross_reference: Unimod:431#C

Axiom
annotated source: S-palmitoleyl-L-cysteine
annotated property: has_exact_synonym
annotated target: (R)-2-amino-3-((Z)-9-hexadecenoylsulfanyl)propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: S-palmitoleyl-L-cysteine
annotated property: has_exact_synonym
annotated target: S-palmitoleyl-L-cysteine
has_synonym_type: Name from RESID

Axiom
annotated source: S-palmitoleyl-L-cysteine
annotated property: has_exact_synonym
annotated target: S-palmitoleylated L-cysteine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: S-palmitoleyl-L-cysteine
annotated property: has_exact_synonym
annotated target: SPamD1Cys
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: S-palmitoleyl-L-cysteine
annotated property: has_exact_synonym
annotated target: cis-9-hexadecenoate cysteine thioester
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-palmitoleyl-L-cysteine
annotated property: has_exact_synonym
annotated target: mod187
has_synonym_type: Short label from OMSSA

Axiom
annotated source: S-palmitoleyl-L-cysteine
annotated property: has_related_synonym
annotated target: Palmitoleyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: S-palmitoleyl-L-cysteine
annotated property: has_related_synonym
annotated target: palmitoleyl
has_synonym_type: Description (full_name) from Unimod

glycine cholesterol ester
type: Class
subclass of: MOD_00908
subclass of: MOD_01155
definition: A protein modification that effectively converts a glycine residue to glycine cholesterol ester.
diff avg: 368.65
diff formula: C 27 H 44 N 0 O 0
diff mono: 368.3443
formula: C 29 H 48 N 1 O 2
mass avg: 442.71
mass mono: 442.3685
origin: G
source: natural
term spec: C-term
database_cross_reference: Unimod:432
database_cross_reference: uniprot.ptm:PTM-0090
has_exact_synonym: LIPID Cholesterol glycine ester
has_exact_synonym: cholesteryl glycinate
has_exact_synonym: glycine cholest-5-en-3beta-ol ester
has_exact_synonym: glycine cholesterol ester
has_exact_synonym: hedgehog lipophilic adduct
has_obo_namespace: PSI-MOD
has_related_synonym: C-cholesterol
has_related_synonym: cholesterol ester
id: MOD:00314
in_subset: PSI-MOD-slim
comment: Incidental to RESID:AA0060. Unimod origin corrected [JSG].

Axiom
annotated source: glycine cholesterol ester
annotated property: definition
annotated target: A protein modification that effectively converts a glycine residue to glycine cholesterol ester.
database_cross_reference: ChEBI:143135
database_cross_reference: PubMed:11111088
database_cross_reference: PubMed:8824192
database_cross_reference: RESID:AA0309
database_cross_reference: Unimod:432#C-term

Axiom
annotated source: glycine cholesterol ester
annotated property: has_exact_synonym
annotated target: LIPID Cholesterol glycine ester
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: glycine cholesterol ester
annotated property: has_exact_synonym
annotated target: cholesteryl glycinate
has_synonym_type: Alternate name from RESID

Axiom
annotated source: glycine cholesterol ester
annotated property: has_exact_synonym
annotated target: glycine cholest-5-en-3beta-ol ester
has_synonym_type: Systematic name from RESID

Axiom
annotated source: glycine cholesterol ester
annotated property: has_exact_synonym
annotated target: glycine cholesterol ester
has_synonym_type: Name from RESID

Axiom
annotated source: glycine cholesterol ester
annotated property: has_exact_synonym
annotated target: hedgehog lipophilic adduct
has_synonym_type: Alternate name from RESID

Axiom
annotated source: glycine cholesterol ester
annotated property: has_related_synonym
annotated target: C-cholesterol
has_synonym_type: Interim label from Unimod

Axiom
annotated source: glycine cholesterol ester
annotated property: has_related_synonym
annotated target: cholesterol ester
has_synonym_type: Description (full_name) from Unimod

pentakis-L-cysteinyl L-histidino nickel tetrairon pentasulfide
type: Class
subclass of: MOD_00739
subclass of: MOD_00741
subclass of: MOD_02067
subclass of: MOD_02070
definition: A protein modification that effectively converts five L-cysteine residues, an L-histidine residue and a one-nickel four-iron five-sulfur cluster to pentakis-L-cysteinyl L-histidino nickel tetrairon pentasulfide.
diff avg: 436.33
diff formula: C 0 Fe 4 H -6 N 0 Ni 1 O 0 S 5
diff mono: 435.4885
formula: C 21 Fe 4 H 26 N 8 Ni 1 O 6 S 10
mass avg: 1089.16
mass mono: 1087.5934
origin: C, C, C, C, C, H
source: natural
has_exact_synonym: METAL Nickel-iron-sulfur (Ni-4Fe-5S)
has_exact_synonym: METAL Nickel-iron-sulfur (Ni-4Fe-5S); via tele nitrogen
has_exact_synonym: Ni-4Fe-5S cluster
has_exact_synonym: carbon monoxide dehydrogenase nickel-iron cofactor
has_exact_synonym: mu-1:2kappaS-sulfido-mu3-1:3:5kappaS-sulfido-mu3-2:3:4kappaS-sulfido-mu3-2:4:5kappaS-sulfido-mu3-3:4:5kappaS-sulfido-N1'-histidino-S-cysteinyl-1-iron-S-cysteinyl-2-nickel-3,4,5-tris-(S-cysteinyl iron)
has_exact_synonym: pentakis-L-cysteinyl L-histidino nickel tetrairon pentasulfide
has_obo_namespace: PSI-MOD
id: MOD:00315
comment: Cross-link 6.

Axiom
annotated source: pentakis-L-cysteinyl L-histidino nickel tetrairon pentasulfide
annotated property: definition
annotated target: A protein modification that effectively converts five L-cysteine residues, an L-histidine residue and a one-nickel four-iron five-sulfur cluster to pentakis-L-cysteinyl L-histidino nickel tetrairon pentasulfide.
database_cross_reference: PubMed:11509720
database_cross_reference: PubMed:2550436
database_cross_reference: RESID:AA0310

Axiom
annotated source: pentakis-L-cysteinyl L-histidino nickel tetrairon pentasulfide
annotated property: has_exact_synonym
annotated target: METAL Nickel-iron-sulfur (Ni-4Fe-5S)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: pentakis-L-cysteinyl L-histidino nickel tetrairon pentasulfide
annotated property: has_exact_synonym
annotated target: METAL Nickel-iron-sulfur (Ni-4Fe-5S); via tele nitrogen
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: pentakis-L-cysteinyl L-histidino nickel tetrairon pentasulfide
annotated property: has_exact_synonym
annotated target: Ni-4Fe-5S cluster
has_synonym_type: Alternate name from RESID

Axiom
annotated source: pentakis-L-cysteinyl L-histidino nickel tetrairon pentasulfide
annotated property: has_exact_synonym
annotated target: carbon monoxide dehydrogenase nickel-iron cofactor
has_synonym_type: Alternate name from RESID

Axiom
annotated source: pentakis-L-cysteinyl L-histidino nickel tetrairon pentasulfide
annotated property: has_exact_synonym
annotated target: mu-1:2kappaS-sulfido-mu3-1:3:5kappaS-sulfido-mu3-2:3:4kappaS-sulfido-mu3-2:4:5kappaS-sulfido-mu3-3:4:5kappaS-sulfido-N1'-histidino-S-cysteinyl-1-iron-S-cysteinyl-2-nickel-3,4,5-tris-(S-cysteinyl iron)
has_synonym_type: Systematic name from RESID

Axiom
annotated source: pentakis-L-cysteinyl L-histidino nickel tetrairon pentasulfide
annotated property: has_exact_synonym
annotated target: pentakis-L-cysteinyl L-histidino nickel tetrairon pentasulfide
has_synonym_type: Name from RESID

N4,N4-dimethyl-L-asparagine
type: Class
subclass of: dimethylated residue
subclass of: N-methylated residue
subclass of: MOD_00673
definition: A protein modification that effectively converts an L-asparagine residue to N4,N4-dimethyl-L-asparagine.
diff avg: 28.05
diff formula: C 2 H 4 N 0 O 0
diff mono: 28.0313
formula: C 6 H 10 N 2 O 2
mass avg: 142.16
mass mono: 142.07423
origin: N
source: hypothetical
database_cross_reference: Unimod:36
database_cross_reference: uniprot.ptm:PTM-0182
has_exact_synonym: (2S)-2-amino-4-(dimethylamino)-4-oxobutanoic acid
has_exact_synonym: 2-amino-N4,N4-dimethylbutanediamic acid
has_exact_synonym: MOD_RES N4,N4-dimethylasparagine
has_exact_synonym: N(gamma),N(gamma)-dimethylasparagine
has_exact_synonym: N4,N4-dimethyl-L-asparagine
has_exact_synonym: N4,N4-dimethylated L-asparagine
has_exact_synonym: N4Me2Asn
has_obo_namespace: PSI-MOD
has_related_synonym: Dimethyl
has_related_synonym: beta-dimethylasparagine
has_related_synonym: di-Methylation
id: MOD:00316

Axiom
annotated source: N4,N4-dimethyl-L-asparagine
annotated property: definition
annotated target: A protein modification that effectively converts an L-asparagine residue to N4,N4-dimethyl-L-asparagine.
database_cross_reference: PubMed:12964758
database_cross_reference: PubMed:14570711
database_cross_reference: PubMed:8783012
database_cross_reference: RESID:AA0311
database_cross_reference: Unimod:36#N

Axiom
annotated source: N4,N4-dimethyl-L-asparagine
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-4-(dimethylamino)-4-oxobutanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N4,N4-dimethyl-L-asparagine
annotated property: has_exact_synonym
annotated target: 2-amino-N4,N4-dimethylbutanediamic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N4,N4-dimethyl-L-asparagine
annotated property: has_exact_synonym
annotated target: MOD_RES N4,N4-dimethylasparagine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N4,N4-dimethyl-L-asparagine
annotated property: has_exact_synonym
annotated target: N(gamma),N(gamma)-dimethylasparagine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N4,N4-dimethyl-L-asparagine
annotated property: has_exact_synonym
annotated target: N4,N4-dimethyl-L-asparagine
has_synonym_type: Name from RESID

Axiom
annotated source: N4,N4-dimethyl-L-asparagine
annotated property: has_exact_synonym
annotated target: N4,N4-dimethylated L-asparagine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: N4,N4-dimethyl-L-asparagine
annotated property: has_exact_synonym
annotated target: N4Me2Asn
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: N4,N4-dimethyl-L-asparagine
annotated property: has_related_synonym
annotated target: Dimethyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: N4,N4-dimethyl-L-asparagine
annotated property: has_related_synonym
annotated target: beta-dimethylasparagine
has_synonym_type: Misnomer tagged alternate name from RESID

Axiom
annotated source: N4,N4-dimethyl-L-asparagine
annotated property: has_related_synonym
annotated target: di-Methylation
has_synonym_type: Description (full_name) from Unimod

N6-3,4-didehydroretinylidene-L-lysine
type: Class
subclass of: MOD_00912
definition: A protein modification that effectively converts an L-lysine residue to N6-3,4-didehydroretinylidene-L-lysine.
diff avg: 264.41
diff formula: C 20 H 24 N 0 O 0
diff mono: 264.1878
formula: C 26 H 36 N 2 O 1
mass avg: 392.59
mass mono: 392.28278
origin: K
source: natural
database_cross_reference: Unimod:433
has_exact_synonym: (S)-2-amino-6-[(2E,4E,6E,8E)-3,7-dimethyl-9-(2,6,6-trimethylcyclohexa-1,3-dien-1-yl)-2,4,6,8-nonatetraenylidene]aminohexanoic acid
has_exact_synonym: N6-(3,4-didehydroretinylidene)-L-lysine
has_exact_synonym: N6-3-dehydroretinal-L-lysine
has_exact_synonym: N6-3-dehydroretinyl-lysine
has_obo_namespace: PSI-MOD
has_related_synonym: 3,4-didehydroretinylidene
has_related_synonym: Didehydroretinylidene
id: MOD:00317

Axiom
annotated source: N6-3,4-didehydroretinylidene-L-lysine
annotated property: definition
annotated target: A protein modification that effectively converts an L-lysine residue to N6-3,4-didehydroretinylidene-L-lysine.
database_cross_reference: PubMed:10717661
database_cross_reference: PubMed:3257009
database_cross_reference: PubMed:4056688
database_cross_reference: RESID:AA0312
database_cross_reference: Unimod:433#K

Axiom
annotated source: N6-3,4-didehydroretinylidene-L-lysine
annotated property: has_exact_synonym
annotated target: (S)-2-amino-6-[(2E,4E,6E,8E)-3,7-dimethyl-9-(2,6,6-trimethylcyclohexa-1,3-dien-1-yl)-2,4,6,8-nonatetraenylidene]aminohexanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N6-3,4-didehydroretinylidene-L-lysine
annotated property: has_exact_synonym
annotated target: N6-(3,4-didehydroretinylidene)-L-lysine
has_synonym_type: Name from RESID

Axiom
annotated source: N6-3,4-didehydroretinylidene-L-lysine
annotated property: has_exact_synonym
annotated target: N6-3-dehydroretinal-L-lysine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N6-3,4-didehydroretinylidene-L-lysine
annotated property: has_exact_synonym
annotated target: N6-3-dehydroretinyl-lysine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N6-3,4-didehydroretinylidene-L-lysine
annotated property: has_related_synonym
annotated target: 3,4-didehydroretinylidene
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: N6-3,4-didehydroretinylidene-L-lysine
annotated property: has_related_synonym
annotated target: Didehydroretinylidene
has_synonym_type: Agreed label from MS community

4'-(S-L-cysteinyl)-L-tryptophyl quinone
type: Class
subclass of: MOD_00687
subclass of: MOD_02057
definition: A protein modification that effectively cross-links an L-cysteine residue and an L-tryptophan residue by a thioether bond to form 4'-(S-L-cysteinyl)-L-tryptophyl quinone.
diff avg: 27.97
diff formula: C 0 H -4 N 0 O 2 S 0
diff mono: 27.958529
formula: C 14 H 11 N 3 O 4 S 1
mass avg: 317.32
mass mono: 317.04703
origin: C, W
source: natural
database_cross_reference: uniprot.ptm:PTM-0041
has_exact_synonym: (2R)-2-amino-3-[(3-[(2S)-2-amino-2-carboxyethyl]-6,7-dioxo-6,7-dihydro-1H-indol-4-yl)sulfanyl]propanoic acid
has_exact_synonym: 3-(2-amino-2-carboxyethyl)-4-[2-amino-2-carboxyethyl]sulfanyl-6,7-indolinedione
has_exact_synonym: 4'-(L-cystein-S-yl)-L-tryptophyl quinone
has_exact_synonym: 4-(S-cysteinyl)tryptophan-6,7-dione
has_exact_synonym: CROSSLNK 4'-cysteinyl-tryptophylquinone (Cys-Trp)
has_exact_synonym: CTQ
has_exact_synonym: cysteine tryptophylquinone
has_obo_namespace: PSI-MOD
id: MOD:00318
comment: Cross-link 2; secondary to RESID:AA0148.

Axiom
annotated source: 4'-(S-L-cysteinyl)-L-tryptophyl quinone
annotated property: definition
annotated target: A protein modification that effectively cross-links an L-cysteine residue and an L-tryptophan residue by a thioether bond to form 4'-(S-L-cysteinyl)-L-tryptophyl quinone.
database_cross_reference: PubMed:11555656
database_cross_reference: PubMed:11717396
database_cross_reference: RESID:AA0313

Axiom
annotated source: 4'-(S-L-cysteinyl)-L-tryptophyl quinone
annotated property: has_exact_synonym
annotated target: (2R)-2-amino-3-[(3-[(2S)-2-amino-2-carboxyethyl]-6,7-dioxo-6,7-dihydro-1H-indol-4-yl)sulfanyl]propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: 4'-(S-L-cysteinyl)-L-tryptophyl quinone
annotated property: has_exact_synonym
annotated target: 3-(2-amino-2-carboxyethyl)-4-[2-amino-2-carboxyethyl]sulfanyl-6,7-indolinedione
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 4'-(S-L-cysteinyl)-L-tryptophyl quinone
annotated property: has_exact_synonym
annotated target: 4'-(L-cystein-S-yl)-L-tryptophyl quinone
has_synonym_type: Name from RESID

Axiom
annotated source: 4'-(S-L-cysteinyl)-L-tryptophyl quinone
annotated property: has_exact_synonym
annotated target: 4-(S-cysteinyl)tryptophan-6,7-dione
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 4'-(S-L-cysteinyl)-L-tryptophyl quinone
annotated property: has_exact_synonym
annotated target: CROSSLNK 4'-cysteinyl-tryptophylquinone (Cys-Trp)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: 4'-(S-L-cysteinyl)-L-tryptophyl quinone
annotated property: has_exact_synonym
annotated target: CTQ
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 4'-(S-L-cysteinyl)-L-tryptophyl quinone
annotated property: has_exact_synonym
annotated target: cysteine tryptophylquinone
has_synonym_type: Alternate name from RESID

3-(S-L-cysteinyl)-L-aspartic acid
type: Class
subclass of: MOD_01993
subclass of: MOD_02043
definition: A protein modification that effectively cross-links an L-cysteine residue and an L-aspartic acid residue by a thioether bond to form 2-(S-L-cysteinyl)-L-aspartic acid.
diff avg: -2.02
diff formula: C 0 H -2 N 0 O 0 S 0
diff mono: -2.01565
formula: C 7 H 8 N 2 O 4 S 1
mass avg: 216.21
mass mono: 216.02048
origin: C, D
source: natural
database_cross_reference: uniprot.ptm:PTM-0025
has_exact_synonym: (2R,3S)-2-amino-3-([(2R)-2-amino-2-carboxyethyl]sulfanyl)butanedioic acid
has_exact_synonym: (2R,3S,6R)-2,6-diamino-3-carboxy-4-thiaheptanedioic acid
has_exact_synonym: 3-(L-cystein-S-yl)-L-aspartic acid
has_exact_synonym: 3-carboxy-L-lanthionine
has_exact_synonym: CROSSLNK 3-cysteinyl-aspartic acid (Cys-Asp)
has_obo_namespace: PSI-MOD
id: MOD:00319
comment: Cross-link 2.

Axiom
annotated source: 3-(S-L-cysteinyl)-L-aspartic acid
annotated property: definition
annotated target: A protein modification that effectively cross-links an L-cysteine residue and an L-aspartic acid residue by a thioether bond to form 2-(S-L-cysteinyl)-L-aspartic acid.
database_cross_reference: PubMed:11555656
database_cross_reference: PubMed:11717396
database_cross_reference: RESID:AA0314

Axiom
annotated source: 3-(S-L-cysteinyl)-L-aspartic acid
annotated property: has_exact_synonym
annotated target: (2R,3S)-2-amino-3-([(2R)-2-amino-2-carboxyethyl]sulfanyl)butanedioic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: 3-(S-L-cysteinyl)-L-aspartic acid
annotated property: has_exact_synonym
annotated target: (2R,3S,6R)-2,6-diamino-3-carboxy-4-thiaheptanedioic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 3-(S-L-cysteinyl)-L-aspartic acid
annotated property: has_exact_synonym
annotated target: 3-(L-cystein-S-yl)-L-aspartic acid
has_synonym_type: Name from RESID

Axiom
annotated source: 3-(S-L-cysteinyl)-L-aspartic acid
annotated property: has_exact_synonym
annotated target: 3-carboxy-L-lanthionine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 3-(S-L-cysteinyl)-L-aspartic acid
annotated property: has_exact_synonym
annotated target: CROSSLNK 3-cysteinyl-aspartic acid (Cys-Asp)
has_synonym_type: Protein feature description from UniProtKB

4-(S-L-cysteinyl)-L-glutamic acid
type: Class
subclass of: MOD_00687
subclass of: MOD_02045
definition: A protein modification that effectively cross-links an L-cysteine residue and an L-glutamic acid residue by a thioether bond to form 4-(S-L-cysteinyl)-L-glutamic acid.
diff avg: -2.02
diff formula: C 0 H -2 N 0 O 0 S 0
diff mono: -2.01565
formula: C 8 H 10 N 2 O 4 S 1
mass avg: 230.24
mass mono: 230.03613
origin: C, E
source: natural
database_cross_reference: uniprot.ptm:PTM-0040
has_exact_synonym: (2S,3S,7R)-2,7-diamino-4-carboxy-5-thiaoctanedioic acid
has_exact_synonym: (2S,4S)-2-amino-4-[(R)-2-amino-2-carboxyethyl]sulfanylpentanedioic acid
has_exact_synonym: 4-(L-cystein-S-yl)-L-glutamic acid
has_exact_synonym: CROSSLNK 4-cysteinyl-glutamic acid (Cys-Glu)
has_obo_namespace: PSI-MOD
id: MOD:00320
comment: Cross-link 2.

Axiom
annotated source: 4-(S-L-cysteinyl)-L-glutamic acid
annotated property: definition
annotated target: A protein modification that effectively cross-links an L-cysteine residue and an L-glutamic acid residue by a thioether bond to form 4-(S-L-cysteinyl)-L-glutamic acid.
database_cross_reference: ChEBI:20293
database_cross_reference: PubMed:11555656
database_cross_reference: PubMed:11717396
database_cross_reference: RESID:AA0315

Axiom
annotated source: 4-(S-L-cysteinyl)-L-glutamic acid
annotated property: has_exact_synonym
annotated target: (2S,3S,7R)-2,7-diamino-4-carboxy-5-thiaoctanedioic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 4-(S-L-cysteinyl)-L-glutamic acid
annotated property: has_exact_synonym
annotated target: (2S,4S)-2-amino-4-[(R)-2-amino-2-carboxyethyl]sulfanylpentanedioic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: 4-(S-L-cysteinyl)-L-glutamic acid
annotated property: has_exact_synonym
annotated target: 4-(L-cystein-S-yl)-L-glutamic acid
has_synonym_type: Name from RESID

Axiom
annotated source: 4-(S-L-cysteinyl)-L-glutamic acid
annotated property: has_exact_synonym
annotated target: CROSSLNK 4-cysteinyl-glutamic acid (Cys-Glu)
has_synonym_type: Protein feature description from UniProtKB

cis-14-hydroxy-10,13-dioxo-7-heptadecenoic acid L-aspartate ester
type: Class
subclass of: MOD_00904
subclass of: MOD_01155
definition: A protein modification that effectively converts an L-aspartic acid residue to cis-14-hydroxy-10,13-dioxo-7-heptadecenoic acid L-aspartate ester.
diff avg: 294.39
diff formula: C 17 H 26 N 0 O 4
diff mono: 294.1831
formula: C 21 H 31 N 1 O 7
mass avg: 409.48
mass mono: 409.21005
origin: D
source: natural
database_cross_reference: Unimod:434
database_cross_reference: uniprot.ptm:PTM-0091
has_exact_synonym: (7Z,14Xi)-14-[(S)-3-amino-3-carboxy-propanoyl]oxy-10,13-dioxo-7-heptadecenoic acid
has_exact_synonym: LIPID Cis-14-hydroxy-10,13-dioxo-7-heptadecenoic acid aspartate ester
has_exact_synonym: barley lipid transfer protein modification
has_exact_synonym: cis-14-hydroxy-10,13-dioxo-7-heptadecenoic acid L-aspartate ester
has_obo_namespace: PSI-MOD
has_related_synonym: CHDH
has_related_synonym: cis-14-hydroxy-10,13-dioxo-7-heptadecenoic ester
id: MOD:00321

Axiom
annotated source: cis-14-hydroxy-10,13-dioxo-7-heptadecenoic acid L-aspartate ester
annotated property: definition
annotated target: A protein modification that effectively converts an L-aspartic acid residue to cis-14-hydroxy-10,13-dioxo-7-heptadecenoic acid L-aspartate ester.
database_cross_reference: PubMed:11435437
database_cross_reference: PubMed:7949339
database_cross_reference: RESID:AA0316
database_cross_reference: Unimod:434#D

Axiom
annotated source: cis-14-hydroxy-10,13-dioxo-7-heptadecenoic acid L-aspartate ester
annotated property: has_exact_synonym
annotated target: (7Z,14Xi)-14-[(S)-3-amino-3-carboxy-propanoyl]oxy-10,13-dioxo-7-heptadecenoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: cis-14-hydroxy-10,13-dioxo-7-heptadecenoic acid L-aspartate ester
annotated property: has_exact_synonym
annotated target: LIPID Cis-14-hydroxy-10,13-dioxo-7-heptadecenoic acid aspartate ester
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: cis-14-hydroxy-10,13-dioxo-7-heptadecenoic acid L-aspartate ester
annotated property: has_exact_synonym
annotated target: barley lipid transfer protein modification
has_synonym_type: Alternate name from RESID

Axiom
annotated source: cis-14-hydroxy-10,13-dioxo-7-heptadecenoic acid L-aspartate ester
annotated property: has_exact_synonym
annotated target: cis-14-hydroxy-10,13-dioxo-7-heptadecenoic acid L-aspartate ester
has_synonym_type: Name from RESID

Axiom
annotated source: cis-14-hydroxy-10,13-dioxo-7-heptadecenoic acid L-aspartate ester
annotated property: has_related_synonym
annotated target: CHDH
has_synonym_type: Agreed label from MS community

Axiom
annotated source: cis-14-hydroxy-10,13-dioxo-7-heptadecenoic acid L-aspartate ester
annotated property: has_related_synonym
annotated target: cis-14-hydroxy-10,13-dioxo-7-heptadecenoic ester
has_synonym_type: Description (full_name) from Unimod

1'-methyl-L-histidine
type: Class
subclass of: MOD_00724
subclass of: MOD_02038
definition: A protein modification that effectively converts an L-histidine residue to tele-methyl-L-histidine.
diff avg: 14.03
diff formula: C 1 H 2 N 0 O 0
diff mono: 14.01565
formula: C 7 H 9 N 3 O 1
mass avg: 151.17
mass mono: 151.07455
origin: H
source: natural
database_cross_reference: uniprot.ptm:PTM-0290
has_exact_synonym: (S)-2-amino-3-(1-methyl-1H-imidazol-4-yl)propanoic acid
has_exact_synonym: 1'-methyl-L-histidine
has_exact_synonym: MOD_RES Tele-methylhistidine
has_exact_synonym: N(epsilon)-methylhistidine
has_exact_synonym: N(tau)-methylhistidine
has_exact_synonym: NteleMeHis
has_exact_synonym: tele-methylated L-histidine
has_exact_synonym: tele-methylhistidine
has_obo_namespace: PSI-MOD
has_related_synonym: 3-methylhistidine
has_related_synonym: 4-methyl-histidine
has_related_synonym: Methyl
has_related_synonym: Methylation
id: MOD:00322
in_subset: PSI-MOD-slim

Axiom
annotated source: 1'-methyl-L-histidine
annotated property: definition
annotated target: A protein modification that effectively converts an L-histidine residue to tele-methyl-L-histidine.
database_cross_reference: PubMed:10601317
database_cross_reference: PubMed:11474090
database_cross_reference: PubMed:11875433
database_cross_reference: PubMed:6692818
database_cross_reference: PubMed:8076
database_cross_reference: PubMed:8645219
database_cross_reference: RESID:AA0317

Axiom
annotated source: 1'-methyl-L-histidine
annotated property: has_exact_synonym
annotated target: (S)-2-amino-3-(1-methyl-1H-imidazol-4-yl)propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: 1'-methyl-L-histidine
annotated property: has_exact_synonym
annotated target: 1'-methyl-L-histidine
has_synonym_type: Name from RESID

Axiom
annotated source: 1'-methyl-L-histidine
annotated property: has_exact_synonym
annotated target: MOD_RES Tele-methylhistidine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: 1'-methyl-L-histidine
annotated property: has_exact_synonym
annotated target: N(epsilon)-methylhistidine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 1'-methyl-L-histidine
annotated property: has_exact_synonym
annotated target: N(tau)-methylhistidine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 1'-methyl-L-histidine
annotated property: has_exact_synonym
annotated target: NteleMeHis
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: 1'-methyl-L-histidine
annotated property: has_exact_synonym
annotated target: tele-methylated L-histidine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: 1'-methyl-L-histidine
annotated property: has_exact_synonym
annotated target: tele-methylhistidine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 1'-methyl-L-histidine
annotated property: has_related_synonym
annotated target: 3-methylhistidine
has_synonym_type: Misnomer tagged alternate name from RESID

Axiom
annotated source: 1'-methyl-L-histidine
annotated property: has_related_synonym
annotated target: 4-methyl-histidine
has_synonym_type: Misnomer tagged alternate name from RESID

Axiom
annotated source: 1'-methyl-L-histidine
annotated property: has_related_synonym
annotated target: Methyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: 1'-methyl-L-histidine
annotated property: has_related_synonym
annotated target: Methylation
has_synonym_type: Description (full_name) from Unimod

L-lysine methyl ester
type: Class
subclass of: MOD_01683
subclass of: MOD_01689
definition: A protein modification that effectively converts an L-lysine residue to L-lysine methyl ester.
diff avg: 14.03
diff formula: C 1 H 2 N 0 O 0
diff mono: 14.01565
formula: C 7 H 15 N 2 O 2
mass avg: 159.21
mass mono: 159.11336
origin: K
source: natural
term spec: C-term
database_cross_reference: Unimod:34
database_cross_reference: uniprot.ptm:PTM-0170
has_exact_synonym: 2,6-diaminohexanoic methyl ester
has_exact_synonym: L-lysine methyl ester
has_exact_synonym: MOD_RES Lysine methyl ester
has_exact_synonym: OMeLys
has_exact_synonym: alpha,epsilon-diaminocaproic methyl ester
has_exact_synonym: methyl (S)-2,6-diaminohexanoate
has_exact_synonym: methyl L-lysinate
has_exact_synonym: methyl esterified L-lysine
has_obo_namespace: PSI-MOD
has_related_synonym: Methyl
has_related_synonym: Methylation
id: MOD:00323
in_subset: PSI-MOD-slim

Axiom
annotated source: L-lysine methyl ester
annotated property: definition
annotated target: A protein modification that effectively converts an L-lysine residue to L-lysine methyl ester.
database_cross_reference: PubMed:10973948
database_cross_reference: PubMed:11875433
database_cross_reference: RESID:AA0318
database_cross_reference: Unimod:34#C-term

Axiom
annotated source: L-lysine methyl ester
annotated property: has_exact_synonym
annotated target: 2,6-diaminohexanoic methyl ester
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-lysine methyl ester
annotated property: has_exact_synonym
annotated target: L-lysine methyl ester
has_synonym_type: Name from RESID

Axiom
annotated source: L-lysine methyl ester
annotated property: has_exact_synonym
annotated target: MOD_RES Lysine methyl ester
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-lysine methyl ester
annotated property: has_exact_synonym
annotated target: OMeLys
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-lysine methyl ester
annotated property: has_exact_synonym
annotated target: alpha,epsilon-diaminocaproic methyl ester
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-lysine methyl ester
annotated property: has_exact_synonym
annotated target: methyl (S)-2,6-diaminohexanoate
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-lysine methyl ester
annotated property: has_exact_synonym
annotated target: methyl L-lysinate
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-lysine methyl ester
annotated property: has_exact_synonym
annotated target: methyl esterified L-lysine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: L-lysine methyl ester
annotated property: has_related_synonym
annotated target: Methyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: L-lysine methyl ester
annotated property: has_related_synonym
annotated target: Methylation
has_synonym_type: Description (full_name) from Unimod

L-serinyl molybdenum bis(molybdopterin guanine dinucleotide)
type: Class
subclass of: MOD_00744
subclass of: MOD_02072
definition: A protein modification that effectively converts an L-serine residue to L-serinyl molybdenum bis(molybdopterin guanine dinucleotide).
diff avg: 1588.01
diff formula: C 40 H 47 Mo 1 N 20 O 27 P 4 S 4
diff mono: 1588.9807
formula: C 43 H 52 Mo 1 N 21 O 29 P 4 S 4
mass avg: 1675.09
mass mono: 1676.0127
origin: S
source: natural
has_exact_synonym: 2-amino-5,6-dimercapto-7-methyl-3,7,8a,9-tetrahydro-8-oxa-1,3,9,10-tetraazaanthracen-4-one guanosine dinucleotide
has_exact_synonym: L-serinyl molybdenum bis(molybdopterin guanine dinucleotide)
has_exact_synonym: bis[8-amino-1a,2,4a,5,6,7,10-heptahydro-2-(trihydrogen diphosphate 5'-ester with guanosine)methyl-6-oxo-3,4-disulfanyl-pteridino[6,7-5,6]pyranoato-S3,S4]-O3-serinyl-molybdenum oxide
has_obo_namespace: PSI-MOD
id: MOD:00324

Axiom
annotated source: L-serinyl molybdenum bis(molybdopterin guanine dinucleotide)
annotated property: definition
annotated target: A protein modification that effectively converts an L-serine residue to L-serinyl molybdenum bis(molybdopterin guanine dinucleotide).
database_cross_reference: PubMed:8658132
database_cross_reference: PubMed:8658134
database_cross_reference: RESID:AA0319

Axiom
annotated source: L-serinyl molybdenum bis(molybdopterin guanine dinucleotide)
annotated property: has_exact_synonym
annotated target: 2-amino-5,6-dimercapto-7-methyl-3,7,8a,9-tetrahydro-8-oxa-1,3,9,10-tetraazaanthracen-4-one guanosine dinucleotide
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-serinyl molybdenum bis(molybdopterin guanine dinucleotide)
annotated property: has_exact_synonym
annotated target: L-serinyl molybdenum bis(molybdopterin guanine dinucleotide)
has_synonym_type: Name from RESID

Axiom
annotated source: L-serinyl molybdenum bis(molybdopterin guanine dinucleotide)
annotated property: has_exact_synonym
annotated target: bis[8-amino-1a,2,4a,5,6,7,10-heptahydro-2-(trihydrogen diphosphate 5'-ester with guanosine)methyl-6-oxo-3,4-disulfanyl-pteridino[6,7-5,6]pyranoato-S3,S4]-O3-serinyl-molybdenum oxide
has_synonym_type: Systematic name from RESID

L-beta-methylthioasparagine
type: Class
subclass of: MOD_00903
subclass of: MOD_01153
definition: A protein modification that effectively converts an L-asparagine residue to L-beta-methylthioasparagine.
diff avg: 46.09
diff formula: C 1 H 2 N 0 O 0 S 1
diff mono: 45.98772
formula: C 5 H 8 N 2 O 2 S 1
mass avg: 160.19
mass mono: 160.03065
origin: N
source: hypothetical
database_cross_reference: Unimod:39
has_exact_synonym: (2R,3Xi)-2-amino-3-(methylsulfanyl)-4-butanediamic acid
has_exact_synonym: 2,4-diamino-3-(methylsulfanyl)-4-oxobutanoic acid
has_exact_synonym: 3-(methylthio)-L-asparagine
has_exact_synonym: 3-carboxamido-S-methyl-cysteine
has_exact_synonym: beta-(methylthio)asparagine
has_obo_namespace: PSI-MOD
has_related_synonym: Beta-methylthiolation
has_related_synonym: Methylthio
id: MOD:00325
comment: This modification was predicted for ribosomal protein S12 in Bacillus subtilis when the sequence in the original version of the genome was reported to have asparagine rather than aspartic acid at the position of the methylthioaspartic acid modification (see MOD:00237). Two groups independently confirmed that the genome sequence was incorrect. The sequence in the revised genome has aspartic acid at that position. This is a deprecated entry in RESID. It probably does not occur naturally [JSG].

Axiom
annotated source: L-beta-methylthioasparagine
annotated property: definition
annotated target: A protein modification that effectively converts an L-asparagine residue to L-beta-methylthioasparagine.
database_cross_reference: RESID:AA0320
database_cross_reference: Unimod:39#N

Axiom
annotated source: L-beta-methylthioasparagine
annotated property: has_exact_synonym
annotated target: (2R,3Xi)-2-amino-3-(methylsulfanyl)-4-butanediamic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-beta-methylthioasparagine
annotated property: has_exact_synonym
annotated target: 2,4-diamino-3-(methylsulfanyl)-4-oxobutanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-beta-methylthioasparagine
annotated property: has_exact_synonym
annotated target: 3-(methylthio)-L-asparagine
has_synonym_type: Name from RESID

Axiom
annotated source: L-beta-methylthioasparagine
annotated property: has_exact_synonym
annotated target: 3-carboxamido-S-methyl-cysteine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-beta-methylthioasparagine
annotated property: has_exact_synonym
annotated target: beta-(methylthio)asparagine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-beta-methylthioasparagine
annotated property: has_related_synonym
annotated target: Beta-methylthiolation
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: L-beta-methylthioasparagine
annotated property: has_related_synonym
annotated target: Methylthio
has_synonym_type: Interim label from Unimod

L-pyrrolysine (Lys)
type: Class
subclass of: MOD_00912
definition: A protein modification that effectively converts an L-lysine residue to L-pyrrolysine (not known as a natural, post-translational modification process).
diff avg: 109.13
diff formula: C 6 H 7 N 1 O 1
diff mono: 109.052765
formula: C 12 H 19 N 3 O 2
mass avg: 237.3
mass mono: 237.14772
origin: K
source: artifact
database_cross_reference: Unimod:435
has_exact_synonym: (2S)-2-amino-6-[(2R,3R)-3-methyl-3,4-dihydro-2H-pyrrol-2-ylcarbonyl]aminohexanoic acid
has_exact_synonym: 2-azanyl-6-[(2R,3R)-3-methyl-3,4-dihydro-2H-pyrrol-2-ylcarbonyl]azanylhexanoic acid
has_exact_synonym: L-pyrrolysine
has_exact_synonym: N6-(4-methyl-1,2-didehydropyrrolidine-5-carboxyl)-L-lysine
has_exact_synonym: N6-(4-methyl-delta-1-pyrroline-5-carboxyl)-L-lysine
has_exact_synonym: N6-([(2R,3R)-3-methyl-3,4-dihydro-2H-pyrrol-2-yl]carbonyl)-L-lysine
has_exact_synonym: NON_STD Pyrrolysine
has_exact_synonym: Pyl(Lys)
has_exact_synonym: monomethylamine methyltransferase cofactor lysine adduct
has_obo_namespace: PSI-MOD
id: MOD:00326
comment: This entry is for the artifactual formation of L-pyrrolysine from lysine. For encoded L-pyrrolysine, use MOD:01187 [JSG].

Axiom
annotated source: L-pyrrolysine (Lys)
annotated property: definition
annotated target: A protein modification that effectively converts an L-lysine residue to L-pyrrolysine (not known as a natural, post-translational modification process).
database_cross_reference: PubMed:11435424
database_cross_reference: PubMed:12029131
database_cross_reference: PubMed:12029132
database_cross_reference: PubMed:15314242
database_cross_reference: PubMed:16096277
database_cross_reference: RESID:AA0321#LYS
database_cross_reference: Unimod:435#K

Axiom
annotated source: L-pyrrolysine (Lys)
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-6-[(2R,3R)-3-methyl-3,4-dihydro-2H-pyrrol-2-ylcarbonyl]aminohexanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-pyrrolysine (Lys)
annotated property: has_exact_synonym
annotated target: 2-azanyl-6-[(2R,3R)-3-methyl-3,4-dihydro-2H-pyrrol-2-ylcarbonyl]azanylhexanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-pyrrolysine (Lys)
annotated property: has_exact_synonym
annotated target: L-pyrrolysine
has_synonym_type: Name from RESID

Axiom
annotated source: L-pyrrolysine (Lys)
annotated property: has_exact_synonym
annotated target: N6-(4-methyl-1,2-didehydropyrrolidine-5-carboxyl)-L-lysine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-pyrrolysine (Lys)
annotated property: has_exact_synonym
annotated target: N6-(4-methyl-delta-1-pyrroline-5-carboxyl)-L-lysine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-pyrrolysine (Lys)
annotated property: has_exact_synonym
annotated target: N6-([(2R,3R)-3-methyl-3,4-dihydro-2H-pyrrol-2-yl]carbonyl)-L-lysine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-pyrrolysine (Lys)
annotated property: has_exact_synonym
annotated target: NON_STD Pyrrolysine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-pyrrolysine (Lys)
annotated property: has_exact_synonym
annotated target: Pyl(Lys)
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-pyrrolysine (Lys)
annotated property: has_exact_synonym
annotated target: monomethylamine methyltransferase cofactor lysine adduct
has_synonym_type: Alternate name from RESID

3-hydroxy-L-tryptophan
type: Class
subclass of: MOD_01622
definition: A protein modification that effectively converts an L-tryptophan residue to a 3-hydroxy-L-tryptophan.
diff avg: 16.0
diff formula: C 0 H 0 N 0 O 1
diff mono: 15.994915
formula: C 11 H 10 N 2 O 2
mass avg: 202.21
mass mono: 202.07423
origin: W
source: hypothetical
database_cross_reference: uniprot.ptm:PTM-0031
has_exact_synonym: (2S,3S)-2-amino-3-hydroxy-3-(1H-indol-3-yl)propanoic acid
has_exact_synonym: 3-hydroxy-L-tryptophan
has_exact_synonym: 3-hydroxylated L-tryptophan
has_exact_synonym: 3-hydroxytryptophan
has_exact_synonym: 3HyTrp
has_exact_synonym: MOD_RES 3-hydroxytryptophan
has_exact_synonym: beta-hydroxytryptophan
has_obo_namespace: PSI-MOD
id: MOD:00327

Axiom
annotated source: 3-hydroxy-L-tryptophan
annotated property: definition
annotated target: A protein modification that effectively converts an L-tryptophan residue to a 3-hydroxy-L-tryptophan.
database_cross_reference: ChEBI:141794
database_cross_reference: PubMed:10024453
database_cross_reference: PubMed:11457355
database_cross_reference: RESID:AA0322

Axiom
annotated source: 3-hydroxy-L-tryptophan
annotated property: has_exact_synonym
annotated target: (2S,3S)-2-amino-3-hydroxy-3-(1H-indol-3-yl)propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: 3-hydroxy-L-tryptophan
annotated property: has_exact_synonym
annotated target: 3-hydroxy-L-tryptophan
has_synonym_type: Name from RESID

Axiom
annotated source: 3-hydroxy-L-tryptophan
annotated property: has_exact_synonym
annotated target: 3-hydroxylated L-tryptophan
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: 3-hydroxy-L-tryptophan
annotated property: has_exact_synonym
annotated target: 3-hydroxytryptophan
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 3-hydroxy-L-tryptophan
annotated property: has_exact_synonym
annotated target: 3HyTrp
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: 3-hydroxy-L-tryptophan
annotated property: has_exact_synonym
annotated target: MOD_RES 3-hydroxytryptophan
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: 3-hydroxy-L-tryptophan
annotated property: has_exact_synonym
annotated target: beta-hydroxytryptophan
has_synonym_type: Alternate name from RESID

O4'-(phospho-3'-DNA)-L-tyrosine
type: Class
subclass of: MOD_00750
subclass of: MOD_00919
definition: A protein modification that effectively crosslinks an L-tyrosine residue and the 3'-end of DNA through a phosphodiester bond to form O4'-(phospho-3'-DNA)-L-tyrosine.
origin: Y
source: natural
has_exact_synonym: (S)-2-amino-3-[4-(3'-deoxyribonucleic acid phosphonoxy)phenyl]propanoic acid
has_exact_synonym: ACT_SITE O-(3'-phospho-DNA)-tyrosine intermediate
has_exact_synonym: O4'-(phospho-3'-DNA)-L-tyrosine
has_exact_synonym: O4'-L-tyrosine 3'-DNA phosphodiester
has_obo_namespace: PSI-MOD
id: MOD:00328

Axiom
annotated source: O4'-(phospho-3'-DNA)-L-tyrosine
annotated property: definition
annotated target: A protein modification that effectively crosslinks an L-tyrosine residue and the 3'-end of DNA through a phosphodiester bond to form O4'-(phospho-3'-DNA)-L-tyrosine.
database_cross_reference: PubMed:2211714
database_cross_reference: RESID:AA0323

Axiom
annotated source: O4'-(phospho-3'-DNA)-L-tyrosine
annotated property: has_exact_synonym
annotated target: (S)-2-amino-3-[4-(3'-deoxyribonucleic acid phosphonoxy)phenyl]propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: O4'-(phospho-3'-DNA)-L-tyrosine
annotated property: has_exact_synonym
annotated target: ACT_SITE O-(3'-phospho-DNA)-tyrosine intermediate
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: O4'-(phospho-3'-DNA)-L-tyrosine
annotated property: has_exact_synonym
annotated target: O4'-(phospho-3'-DNA)-L-tyrosine
has_synonym_type: Name from RESID

Axiom
annotated source: O4'-(phospho-3'-DNA)-L-tyrosine
annotated property: has_exact_synonym
annotated target: O4'-L-tyrosine 3'-DNA phosphodiester
has_synonym_type: Alternate name from RESID

hydroxyheme-L-glutamate ester
type: Class
subclass of: MOD_00699
subclass of: MOD_02068
definition: A protein modification that effectively results from forming an adduct between a glutamic acid residue and the porphyrin compound heme b, (7,12-diethenyl-3,8,13,17-tetramethylporphyrin-2,18-dipropanoato)iron.
diff avg: 614.48
diff formula: C 34 Fe 1 H 30 N 4 O 4
diff mono: 614.1616
formula: C 39 Fe 1 H 37 N 5 O 7
mass avg: 743.6
mass mono: 743.2042
origin: E
source: natural
database_cross_reference: Unimod:436
has_exact_synonym: 5-hydroxymethyl protoporphyrin IX 5-glutamate ester
has_exact_synonym: BINDING Heme (covalent; via 1 link)
has_exact_synonym: [3-[(S)-(4-amino-4-carboxy)butanoyloxymethyl]-7,12-diethenyl-8,13,17-trimethyl-21H,23H-porphine-2,18-bis(2-carboxyethyl)-N21,N22,N23,N24]-ferrate
has_exact_synonym: cytochrome P450 CYP4A family heme cofactor
has_exact_synonym: hydroxyheme-L-glutamate ester
has_obo_namespace: PSI-MOD
has_related_synonym: Hydroxyheme
has_related_synonym: hydroxyheme
id: MOD:00329

Axiom
annotated source: hydroxyheme-L-glutamate ester
annotated property: definition
annotated target: A protein modification that effectively results from forming an adduct between a glutamic acid residue and the porphyrin compound heme b, (7,12-diethenyl-3,8,13,17-tetramethylporphyrin-2,18-dipropanoato)iron.
database_cross_reference: PubMed:11139583
database_cross_reference: PubMed:11821421
database_cross_reference: PubMed:11980497
database_cross_reference: RESID:AA0324
database_cross_reference: Unimod:436#E

Axiom
annotated source: hydroxyheme-L-glutamate ester
annotated property: has_exact_synonym
annotated target: 5-hydroxymethyl protoporphyrin IX 5-glutamate ester
has_synonym_type: Alternate name from RESID

Axiom
annotated source: hydroxyheme-L-glutamate ester
annotated property: has_exact_synonym
annotated target: BINDING Heme (covalent; via 1 link)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: hydroxyheme-L-glutamate ester
annotated property: has_exact_synonym
annotated target: [3-[(S)-(4-amino-4-carboxy)butanoyloxymethyl]-7,12-diethenyl-8,13,17-trimethyl-21H,23H-porphine-2,18-bis(2-carboxyethyl)-N21,N22,N23,N24]-ferrate
has_synonym_type: Systematic name from RESID

Axiom
annotated source: hydroxyheme-L-glutamate ester
annotated property: has_exact_synonym
annotated target: cytochrome P450 CYP4A family heme cofactor
has_synonym_type: Alternate name from RESID

Axiom
annotated source: hydroxyheme-L-glutamate ester
annotated property: has_exact_synonym
annotated target: hydroxyheme-L-glutamate ester
has_synonym_type: Name from RESID

Axiom
annotated source: hydroxyheme-L-glutamate ester
annotated property: has_related_synonym
annotated target: Hydroxyheme
has_synonym_type: Agreed label from MS community

Axiom
annotated source: hydroxyheme-L-glutamate ester
annotated property: has_related_synonym
annotated target: hydroxyheme
has_synonym_type: Description (full_name) from Unimod

(phospho-5'-guanosine)-L-histidine
type: Class
subclass of: MOD_00909
subclass of: MOD_01163
definition: A protein modification that effectively converts an L-histidine residue to a (phospho-5'-guanosine)-L-histidine.
diff avg: 345.21
diff formula: C 10 H 12 N 5 O 7 P 1
diff mono: 345.04742
formula: C 16 H 19 N 8 O 8 P 1
mass avg: 482.35
mass mono: 482.10635
origin: H
source: natural
database_cross_reference: Unimod:413
has_exact_synonym: (2S)-2-amino-3-(1-(5'-adenosine phosphono)imidazol-4-yl)propanoic acid
has_exact_synonym: 1'-(phospho-5'-guanosine)-L-histidine
has_exact_synonym: ACT_SITE GMP-histidine intermediate
has_exact_synonym: L-histidine 5'-guanosine phosphoramidester
has_exact_synonym: L-histidine monoanhydride with 5'-guanylic acid
has_exact_synonym: N(tau)-5'-guanylic-L-histidine
has_exact_synonym: N1'-guanylylated histidine
has_exact_synonym: tele-5'-guanylic-L-histidine
has_obo_namespace: PSI-MOD
has_related_synonym: Phosphoguanosine
has_related_synonym: phospho-guanosine
id: MOD:00330

Axiom
annotated source: (phospho-5'-guanosine)-L-histidine
annotated property: definition
annotated target: A protein modification that effectively converts an L-histidine residue to a (phospho-5'-guanosine)-L-histidine.
database_cross_reference: PubMed:10529169
database_cross_reference: PubMed:10869342
database_cross_reference: PubMed:7559521
database_cross_reference: RESID:AA0325
database_cross_reference: Unimod:413#H

Axiom
annotated source: (phospho-5'-guanosine)-L-histidine
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-3-(1-(5'-adenosine phosphono)imidazol-4-yl)propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: (phospho-5'-guanosine)-L-histidine
annotated property: has_exact_synonym
annotated target: 1'-(phospho-5'-guanosine)-L-histidine
has_synonym_type: Name from RESID

Axiom
annotated source: (phospho-5'-guanosine)-L-histidine
annotated property: has_exact_synonym
annotated target: ACT_SITE GMP-histidine intermediate
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: (phospho-5'-guanosine)-L-histidine
annotated property: has_exact_synonym
annotated target: L-histidine 5'-guanosine phosphoramidester
has_synonym_type: Alternate name from RESID

Axiom
annotated source: (phospho-5'-guanosine)-L-histidine
annotated property: has_exact_synonym
annotated target: L-histidine monoanhydride with 5'-guanylic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: (phospho-5'-guanosine)-L-histidine
annotated property: has_exact_synonym
annotated target: N(tau)-5'-guanylic-L-histidine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: (phospho-5'-guanosine)-L-histidine
annotated property: has_exact_synonym
annotated target: N1'-guanylylated histidine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: (phospho-5'-guanosine)-L-histidine
annotated property: has_exact_synonym
annotated target: tele-5'-guanylic-L-histidine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: (phospho-5'-guanosine)-L-histidine
annotated property: has_related_synonym
annotated target: Phosphoguanosine
has_synonym_type: Agreed label from MS community

Axiom
annotated source: (phospho-5'-guanosine)-L-histidine
annotated property: has_related_synonym
annotated target: phospho-guanosine
has_synonym_type: Description (full_name) from Unimod

tetrakis-L-cysteinyl triiron tetrasulfide
type: Class
subclass of: MOD_00739
subclass of: MOD_02067
definition: A protein modification that effectively converts four L-cysteine residues and a three-iron four-sulfur cluster to tetrakis-L-cysteinyl triiron tetrasulfide.
diff avg: 291.74
diff formula: C 0 Fe 3 H -4 N 0 O 0 S 4
diff mono: 291.66345
formal charge: 3-
formula: C 12 Fe 3 H 16 N 4 O 4 S 8
mass avg: 704.3
mass mono: 703.7002
origin: C, C, C, C
source: hypothetical
has_exact_synonym: bis[bis-L-cysteinyl iron disulfido]iron
has_exact_synonym: di-mu-1:2kappaS-sulfido di-mu-2:3kappaS-sulfido iron bis(bis-S-cysteinyliron)
has_exact_synonym: tetra-mu-sulfido tetrakis-S-L-cysteinyl triiron
has_exact_synonym: tetrakis-L-cysteinyl linear [3Fe-4S] cluster
has_exact_synonym: tetrakis-L-cysteinyl triiron tetrasulfide
has_exact_synonym: tetrakis-L-cysteinyl triiron tetrasulfide D2 cluster
has_obo_namespace: PSI-MOD
id: MOD:00331
comment: Cross-link 4.

Axiom
annotated source: tetrakis-L-cysteinyl triiron tetrasulfide
annotated property: definition
annotated target: A protein modification that effectively converts four L-cysteine residues and a three-iron four-sulfur cluster to tetrakis-L-cysteinyl triiron tetrasulfide.
database_cross_reference: PubMed:11592901
database_cross_reference: PubMed:11941493
database_cross_reference: PubMed:2511202
database_cross_reference: PubMed:6094558
database_cross_reference: RESID:AA0326

Axiom
annotated source: tetrakis-L-cysteinyl triiron tetrasulfide
annotated property: has_exact_synonym
annotated target: bis[bis-L-cysteinyl iron disulfido]iron
has_synonym_type: Alternate name from RESID

Axiom
annotated source: tetrakis-L-cysteinyl triiron tetrasulfide
annotated property: has_exact_synonym
annotated target: di-mu-1:2kappaS-sulfido di-mu-2:3kappaS-sulfido iron bis(bis-S-cysteinyliron)
has_synonym_type: Systematic name from RESID

Axiom
annotated source: tetrakis-L-cysteinyl triiron tetrasulfide
annotated property: has_exact_synonym
annotated target: tetra-mu-sulfido tetrakis-S-L-cysteinyl triiron
has_synonym_type: Alternate name from RESID

Axiom
annotated source: tetrakis-L-cysteinyl triiron tetrasulfide
annotated property: has_exact_synonym
annotated target: tetrakis-L-cysteinyl linear [3Fe-4S] cluster
has_synonym_type: Alternate name from RESID

Axiom
annotated source: tetrakis-L-cysteinyl triiron tetrasulfide
annotated property: has_exact_synonym
annotated target: tetrakis-L-cysteinyl triiron tetrasulfide
has_synonym_type: Name from RESID

Axiom
annotated source: tetrakis-L-cysteinyl triiron tetrasulfide
annotated property: has_exact_synonym
annotated target: tetrakis-L-cysteinyl triiron tetrasulfide D2 cluster
has_synonym_type: Alternate name from RESID

omega-N-glucosyl-L-arginine
type: Class
subclass of: monoglucosylated residue
subclass of: MOD_01980
definition: A protein modification that effectively converts an L-arginine residue to N4-glucosyl-arginine.
diff avg: 162.14
diff formula: C 6 H 10 N 0 O 5
diff mono: 162.05283
formula: C 12 H 22 N 4 O 6
mass avg: 318.33
mass mono: 318.15393
origin: R
source: natural
database_cross_reference: Unimod:41
database_cross_reference: uniprot.ptm:PTM-0515
has_exact_synonym: (2S)-2-amino-5-(beta-D-glucopyranosyl[imino(methylamino)methyl]amino)pentanoic acid
has_exact_synonym: CARBOHYD N-linked (Glc) arginine
has_exact_synonym: NG-beta-D-glucosylarginine
has_exact_synonym: omega-N-(beta-D-glucosyl)-L-arginine
has_exact_synonym: omega-N-glucosyl-L-arginine
has_exact_synonym: omega-N-glycosyl-L-arginine
has_obo_namespace: PSI-MOD
has_related_synonym: Hex
has_related_synonym: Hexose
id: MOD:00332

Axiom
annotated source: omega-N-glucosyl-L-arginine
annotated property: definition
annotated target: A protein modification that effectively converts an L-arginine residue to N4-glucosyl-arginine.
database_cross_reference: PubMed:15279557
database_cross_reference: PubMed:8521968
database_cross_reference: PubMed:9536051
database_cross_reference: RESID:AA0327
database_cross_reference: Unimod:41#R

Axiom
annotated source: omega-N-glucosyl-L-arginine
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-5-(beta-D-glucopyranosyl[imino(methylamino)methyl]amino)pentanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: omega-N-glucosyl-L-arginine
annotated property: has_exact_synonym
annotated target: CARBOHYD N-linked (Glc) arginine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: omega-N-glucosyl-L-arginine
annotated property: has_exact_synonym
annotated target: NG-beta-D-glucosylarginine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: omega-N-glucosyl-L-arginine
annotated property: has_exact_synonym
annotated target: omega-N-(beta-D-glucosyl)-L-arginine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: omega-N-glucosyl-L-arginine
annotated property: has_exact_synonym
annotated target: omega-N-glucosyl-L-arginine
has_synonym_type: Name from RESID

Axiom
annotated source: omega-N-glucosyl-L-arginine
annotated property: has_exact_synonym
annotated target: omega-N-glycosyl-L-arginine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: omega-N-glucosyl-L-arginine
annotated property: has_related_synonym
annotated target: Hex
has_synonym_type: Agreed label from MS community

Axiom
annotated source: omega-N-glucosyl-L-arginine
annotated property: has_related_synonym
annotated target: Hexose
has_synonym_type: Description (full_name) from Unimod

(3-aminopropyl)(L-aspartyl-1-amino)phosphoryl-5'-adenosine
type: Class
subclass of: MOD_00701
subclass of: MOD_00903
definition: A protein modification that effectively converts an L-asparagine residue to (3-aminopropyl)(L-aspartyl-1-amino)phosphoryl-5'-adenosine.
diff avg: 386.3
diff formula: C 13 H 19 N 6 O 6 P 1
diff mono: 386.11038
formula: C 17 H 26 N 8 O 9 P 1
mass avg: 517.42
mass mono: 517.156
origin: N
source: natural
term spec: C-term
database_cross_reference: Unimod:437
database_cross_reference: uniprot.ptm:PTM-0335
has_exact_synonym: (3-aminopropyl)(L-aspartyl-1-amino)phosphoryl-5'-adenosine
has_exact_synonym: 5'-O-[(3-aminopropoxy)(L-aspart-1-ylamino)phosphoryl]adenosine
has_exact_synonym: 9-(5'-O-[(3-aminopropoxy)(L-aspart-1-ylamino)phosphoryl]-beta-D-ribofuranosyl)adenine
has_exact_synonym: MOD_RES Aspartic acid 1-[(3-aminopropyl)(5'-adenosyl)phosphono]amide
has_exact_synonym: N-(aspart-1-yl)-O-(3-aminopropyl)-O-(5'-adenosyl)phosphoramide
has_exact_synonym: microcin C7 asparagine modification
has_obo_namespace: PSI-MOD
has_related_synonym: (3-aminopropyl)(L-aspartyl-1-amino)phosphoryl-5-adenosine
has_related_synonym: C-Asn-deriv
id: MOD:00333
comment: Unimod origin shown as C-term [JSG].

Axiom
annotated source: (3-aminopropyl)(L-aspartyl-1-amino)phosphoryl-5'-adenosine
annotated property: definition
annotated target: A protein modification that effectively converts an L-asparagine residue to (3-aminopropyl)(L-aspartyl-1-amino)phosphoryl-5'-adenosine.
database_cross_reference: PubMed:7559516
database_cross_reference: PubMed:7835418
database_cross_reference: PubMed:8183363
database_cross_reference: RESID:AA0328
database_cross_reference: Unimod:437#C-term

Axiom
annotated source: (3-aminopropyl)(L-aspartyl-1-amino)phosphoryl-5'-adenosine
annotated property: has_exact_synonym
annotated target: (3-aminopropyl)(L-aspartyl-1-amino)phosphoryl-5'-adenosine
has_synonym_type: Name from RESID

Axiom
annotated source: (3-aminopropyl)(L-aspartyl-1-amino)phosphoryl-5'-adenosine
annotated property: has_exact_synonym
annotated target: 5'-O-[(3-aminopropoxy)(L-aspart-1-ylamino)phosphoryl]adenosine
has_synonym_type: Systematic name from RESID

Axiom
annotated source: (3-aminopropyl)(L-aspartyl-1-amino)phosphoryl-5'-adenosine
annotated property: has_exact_synonym
annotated target: 9-(5'-O-[(3-aminopropoxy)(L-aspart-1-ylamino)phosphoryl]-beta-D-ribofuranosyl)adenine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: (3-aminopropyl)(L-aspartyl-1-amino)phosphoryl-5'-adenosine
annotated property: has_exact_synonym
annotated target: MOD_RES Aspartic acid 1-[(3-aminopropyl)(5'-adenosyl)phosphono]amide
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: (3-aminopropyl)(L-aspartyl-1-amino)phosphoryl-5'-adenosine
annotated property: has_exact_synonym
annotated target: N-(aspart-1-yl)-O-(3-aminopropyl)-O-(5'-adenosyl)phosphoramide
has_synonym_type: Alternate name from RESID

Axiom
annotated source: (3-aminopropyl)(L-aspartyl-1-amino)phosphoryl-5'-adenosine
annotated property: has_exact_synonym
annotated target: microcin C7 asparagine modification
has_synonym_type: Alternate name from RESID

Axiom
annotated source: (3-aminopropyl)(L-aspartyl-1-amino)phosphoryl-5'-adenosine
annotated property: has_related_synonym
annotated target: (3-aminopropyl)(L-aspartyl-1-amino)phosphoryl-5-adenosine
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: (3-aminopropyl)(L-aspartyl-1-amino)phosphoryl-5'-adenosine
annotated property: has_related_synonym
annotated target: C-Asn-deriv
has_synonym_type: Interim label from Unimod

1'-heme-L-histidine
type: Class
subclass of: MOD_00699
subclass of: MOD_02070
definition: A protein modification that effectively results from forming an adduct between the tele nitrogen of a histidine residue and the porphyrin compound heme b, (7,12-diethenyl-3,8,13,17-tetramethylporphyrin-2,18-dipropanoato)iron.
diff avg: 616.5
diff formula: C 34 Fe 1 H 32 N 4 O 4
diff mono: 616.1773
formula: C 40 Fe 1 H 39 N 7 O 5
mass avg: 753.64
mass mono: 753.2362
origin: H
source: hypothetical
database_cross_reference: Unimod:390
has_exact_synonym: (S)-[7-ethenyl-12-[1-((2-amino-2-carboxyethyl)-1H-imidazol-1-yl)ethyl]-3,8,13,17-tetramethyl-21H,23H-porphine-2,18-bis(2-carboxyethyl)-N21,N22,N23,N24]-ferrate
has_exact_synonym: 1'-heme-L-histidine
has_exact_synonym: 2-[1-(N1'-histidyl)ethyl]protoporphyrin IX
has_exact_synonym: BINDING Heme (covalent; via tele nitrogen)
has_exact_synonym: N(epsilon)-histidyl heme
has_exact_synonym: N(tau)-histidyl heme
has_exact_synonym: N1'-histidyl heme
has_exact_synonym: tele-histidyl heme
has_obo_namespace: PSI-MOD
has_related_synonym: Heme
has_related_synonym: heme
id: MOD:00334

Axiom
annotated source: 1'-heme-L-histidine
annotated property: definition
annotated target: A protein modification that effectively results from forming an adduct between the tele nitrogen of a histidine residue and the porphyrin compound heme b, (7,12-diethenyl-3,8,13,17-tetramethylporphyrin-2,18-dipropanoato)iron.
database_cross_reference: PubMed:12033922
database_cross_reference: PubMed:12121092
database_cross_reference: RESID:AA0329
database_cross_reference: Unimod:390#H

Axiom
annotated source: 1'-heme-L-histidine
annotated property: has_exact_synonym
annotated target: (S)-[7-ethenyl-12-[1-((2-amino-2-carboxyethyl)-1H-imidazol-1-yl)ethyl]-3,8,13,17-tetramethyl-21H,23H-porphine-2,18-bis(2-carboxyethyl)-N21,N22,N23,N24]-ferrate
has_synonym_type: Systematic name from RESID

Axiom
annotated source: 1'-heme-L-histidine
annotated property: has_exact_synonym
annotated target: 1'-heme-L-histidine
has_synonym_type: Name from RESID

Axiom
annotated source: 1'-heme-L-histidine
annotated property: has_exact_synonym
annotated target: 2-[1-(N1'-histidyl)ethyl]protoporphyrin IX
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 1'-heme-L-histidine
annotated property: has_exact_synonym
annotated target: BINDING Heme (covalent; via tele nitrogen)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: 1'-heme-L-histidine
annotated property: has_exact_synonym
annotated target: N(epsilon)-histidyl heme
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 1'-heme-L-histidine
annotated property: has_exact_synonym
annotated target: N(tau)-histidyl heme
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 1'-heme-L-histidine
annotated property: has_exact_synonym
annotated target: N1'-histidyl heme
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 1'-heme-L-histidine
annotated property: has_exact_synonym
annotated target: tele-histidyl heme
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 1'-heme-L-histidine
annotated property: has_related_synonym
annotated target: Heme
has_synonym_type: Agreed label from MS community

Axiom
annotated source: 1'-heme-L-histidine
annotated property: has_related_synonym
annotated target: heme
has_synonym_type: Description (full_name) from Unimod

(2S,3S,2'R)-3-methyllanthionine sulfoxide
type: Class
subclass of: MOD_01993
subclass of: MOD_02056
subclass of: Restriction
  on property: has functional parent
  some values from: MOD_01981
definition: A protein modification that effectively cross-links an L-cysteine residue and an L-threonine residue by a thioether bond to form (2S,3S,2'R)-3-methyllanthionine sulfoxide.
diff avg: -2.02
diff formula: C 0 H -2 N 0 O 0 S 0
diff mono: -2.01565
formula: C 7 H 10 N 2 O 3 S 1
mass avg: 202.23
mass mono: 202.04121
origin: C, T
source: natural
database_cross_reference: uniprot.ptm:PTM-0069
has_exact_synonym: (2S,3S,4Xi,6R)-2,6-diamino-3-methyl-4-oxo-4-thiaheptanedioic acid
has_exact_synonym: (2S,3S,SXi)-2-amino-3-([(R)-2-amino-2-carboxyethyl]sulfinyl)butanoic acid
has_exact_synonym: 3-methyl-L-lanthionine S-oxide
has_exact_synonym: 3-methyl-L-lanthionine sulfoxide
has_exact_synonym: CROSSLNK Beta-methyllanthionine sulfoxide (Thr-Cys)
has_exact_synonym: S-oxy-3-methyllanthionine
has_obo_namespace: PSI-MOD
id: MOD:00335
comment: Cross-link 2.

Axiom
annotated source: (2S,3S,2'R)-3-methyllanthionine sulfoxide
annotated property: definition
annotated target: A protein modification that effectively cross-links an L-cysteine residue and an L-threonine residue by a thioether bond to form (2S,3S,2'R)-3-methyllanthionine sulfoxide.
database_cross_reference: PubMed:7737178
database_cross_reference: PubMed:9219543
database_cross_reference: RESID:AA0330

Axiom
annotated source: (2S,3S,2'R)-3-methyllanthionine sulfoxide
annotated property: has_exact_synonym
annotated target: (2S,3S,4Xi,6R)-2,6-diamino-3-methyl-4-oxo-4-thiaheptanedioic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: (2S,3S,2'R)-3-methyllanthionine sulfoxide
annotated property: has_exact_synonym
annotated target: (2S,3S,SXi)-2-amino-3-([(R)-2-amino-2-carboxyethyl]sulfinyl)butanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: (2S,3S,2'R)-3-methyllanthionine sulfoxide
annotated property: has_exact_synonym
annotated target: 3-methyl-L-lanthionine S-oxide
has_synonym_type: Alternate name from RESID

Axiom
annotated source: (2S,3S,2'R)-3-methyllanthionine sulfoxide
annotated property: has_exact_synonym
annotated target: 3-methyl-L-lanthionine sulfoxide
has_synonym_type: Name from RESID

Axiom
annotated source: (2S,3S,2'R)-3-methyllanthionine sulfoxide
annotated property: has_exact_synonym
annotated target: CROSSLNK Beta-methyllanthionine sulfoxide (Thr-Cys)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: (2S,3S,2'R)-3-methyllanthionine sulfoxide
annotated property: has_exact_synonym
annotated target: S-oxy-3-methyllanthionine
has_synonym_type: Alternate name from RESID

tris-L-cysteinyl L-aspartato diiron disulfide
type: Class
subclass of: MOD_00739
subclass of: MOD_02066
subclass of: MOD_02067
definition: A protein modification that effectively converts three L-cysteine residues, an L-aspartic acid residue and a two-iron two-sulfur cluster to tris-L-cysteinyl L-aspartato diiron disulfide.
diff avg: 171.78
diff formula: C 0 Fe 2 H -4 N 0 O 0 S 2
diff mono: 171.78381
formal charge: 2-
formula: C 13 Fe 2 H 16 N 4 O 6 S 5
mass avg: 596.28
mass mono: 595.8383
origin: C, C, C, D
source: hypothetical
has_exact_synonym: METAL Iron-sulfur (2Fe-2S)
has_exact_synonym: di-mu-sulfido(bis-S-cysteinyliron)(S-cysteinyl-O4-aspartatoiron)
has_exact_synonym: tris-L-cysteinyl L-aspartato diiron disulfide
has_obo_namespace: PSI-MOD
id: MOD:00336
comment: Cross-link 4.

Axiom
annotated source: tris-L-cysteinyl L-aspartato diiron disulfide
annotated property: definition
annotated target: A protein modification that effectively converts three L-cysteine residues, an L-aspartic acid residue and a two-iron two-sulfur cluster to tris-L-cysteinyl L-aspartato diiron disulfide.
database_cross_reference: PubMed:10968624
database_cross_reference: PubMed:1312028
database_cross_reference: PubMed:7947772
database_cross_reference: RESID:AA0331

Axiom
annotated source: tris-L-cysteinyl L-aspartato diiron disulfide
annotated property: has_exact_synonym
annotated target: METAL Iron-sulfur (2Fe-2S)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: tris-L-cysteinyl L-aspartato diiron disulfide
annotated property: has_exact_synonym
annotated target: di-mu-sulfido(bis-S-cysteinyliron)(S-cysteinyl-O4-aspartatoiron)
has_synonym_type: Systematic name from RESID

Axiom
annotated source: tris-L-cysteinyl L-aspartato diiron disulfide
annotated property: has_exact_synonym
annotated target: tris-L-cysteinyl L-aspartato diiron disulfide
has_synonym_type: Name from RESID

S-carbamoyl-L-cysteine
type: Class
subclass of: carbamoylated residue
subclass of: MOD_00905
definition: A protein modification that effectively converts an L-cysteine residue to S-carbamoyl-L-cysteine.
diff avg: 43.02
diff formula: C 1 H 1 N 1 O 1 S 0
diff mono: 43.005814
formula: C 4 H 6 N 2 O 2 S 1
mass avg: 146.16
mass mono: 146.015
origin: C
source: natural
database_cross_reference: Unimod:5
database_cross_reference: uniprot.ptm:PTM-0649
has_exact_synonym: (R)-2-amino-3-(carbamoylsulfanyl)propanoic acid
has_exact_synonym: 2-amino-3-(aminocarbonyl)sulfanylpropanoic acid
has_exact_synonym: 2-amino-3-(aminocarbonyl)thiopropanoic acid
has_exact_synonym: MOD_RES S-carbamoylcysteine
has_exact_synonym: S-(aminocarbonyl)cysteine
has_exact_synonym: S-carbamoyl-L-cysteine
has_exact_synonym: S-carbamoylcysteine
has_exact_synonym: S-carbamylcysteine
has_exact_synonym: S-cysteinyl carbamate ester
has_exact_synonym: SCbmCys
has_exact_synonym: alpha-amino-beta-carbamylthiopropionic acid
has_exact_synonym: beta-carbamylthioalanine
has_obo_namespace: PSI-MOD
id: MOD:00337

Axiom
annotated source: S-carbamoyl-L-cysteine
annotated property: definition
annotated target: A protein modification that effectively converts an L-cysteine residue to S-carbamoyl-L-cysteine.
database_cross_reference: PubMed:12586941
database_cross_reference: PubMed:240389
database_cross_reference: RESID:AA0332
database_cross_reference: Unimod:5#C

Axiom
annotated source: S-carbamoyl-L-cysteine
annotated property: has_exact_synonym
annotated target: (R)-2-amino-3-(carbamoylsulfanyl)propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: S-carbamoyl-L-cysteine
annotated property: has_exact_synonym
annotated target: 2-amino-3-(aminocarbonyl)sulfanylpropanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-carbamoyl-L-cysteine
annotated property: has_exact_synonym
annotated target: 2-amino-3-(aminocarbonyl)thiopropanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-carbamoyl-L-cysteine
annotated property: has_exact_synonym
annotated target: MOD_RES S-carbamoylcysteine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: S-carbamoyl-L-cysteine
annotated property: has_exact_synonym
annotated target: S-(aminocarbonyl)cysteine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-carbamoyl-L-cysteine
annotated property: has_exact_synonym
annotated target: S-carbamoyl-L-cysteine
has_synonym_type: Name from RESID

Axiom
annotated source: S-carbamoyl-L-cysteine
annotated property: has_exact_synonym
annotated target: S-carbamoylcysteine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-carbamoyl-L-cysteine
annotated property: has_exact_synonym
annotated target: S-carbamylcysteine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-carbamoyl-L-cysteine
annotated property: has_exact_synonym
annotated target: S-cysteinyl carbamate ester
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-carbamoyl-L-cysteine
annotated property: has_exact_synonym
annotated target: SCbmCys
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: S-carbamoyl-L-cysteine
annotated property: has_exact_synonym
annotated target: alpha-amino-beta-carbamylthiopropionic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-carbamoyl-L-cysteine
annotated property: has_exact_synonym
annotated target: beta-carbamylthioalanine
has_synonym_type: Alternate name from RESID

S-cyano-L-cysteine
type: Class
subclass of: MOD_00893
subclass of: MOD_00905
definition: A protein modification that effectively converts an L-cysteine residue to S-cyano-L-cysteine.
diff avg: 25.01
diff formula: C 1 H -1 N 1 O 0 S 0
diff mono: 24.995249
formula: C 4 H 4 N 2 O 1 S 1
mass avg: 128.15
mass mono: 128.00444
origin: C
source: natural
database_cross_reference: Unimod:438
database_cross_reference: uniprot.ptm:PTM-0650
has_exact_synonym: (2R)-2-amino-3-thiocyanatopropanoic acid
has_exact_synonym: MOD_RES S-cyanocysteine
has_exact_synonym: S-cyano-L-cysteine
has_exact_synonym: S-cyanocysteine
has_exact_synonym: alpha-amino-beta-thiocyanatopropionic acid
has_exact_synonym: beta-thiocyanatoalanine
has_exact_synonym: serine thiocyanic acid ester
has_obo_namespace: PSI-MOD
has_related_synonym: Cyano
has_related_synonym: cyano
id: MOD:00338

Axiom
annotated source: S-cyano-L-cysteine
annotated property: definition
annotated target: A protein modification that effectively converts an L-cysteine residue to S-cyano-L-cysteine.
database_cross_reference: PubMed:12586941
database_cross_reference: PubMed:4808702
database_cross_reference: RESID:AA0333
database_cross_reference: Unimod:438#C

Axiom
annotated source: S-cyano-L-cysteine
annotated property: has_exact_synonym
annotated target: (2R)-2-amino-3-thiocyanatopropanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: S-cyano-L-cysteine
annotated property: has_exact_synonym
annotated target: MOD_RES S-cyanocysteine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: S-cyano-L-cysteine
annotated property: has_exact_synonym
annotated target: S-cyano-L-cysteine
has_synonym_type: Name from RESID

Axiom
annotated source: S-cyano-L-cysteine
annotated property: has_exact_synonym
annotated target: S-cyanocysteine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-cyano-L-cysteine
annotated property: has_exact_synonym
annotated target: alpha-amino-beta-thiocyanatopropionic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-cyano-L-cysteine
annotated property: has_exact_synonym
annotated target: beta-thiocyanatoalanine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-cyano-L-cysteine
annotated property: has_exact_synonym
annotated target: serine thiocyanic acid ester
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-cyano-L-cysteine
annotated property: has_related_synonym
annotated target: Cyano
has_synonym_type: Agreed label from MS community

Axiom
annotated source: S-cyano-L-cysteine
annotated property: has_related_synonym
annotated target: cyano
has_synonym_type: Description (full_name) from Unimod

L-cysteinyl hydrogenase diiron subcluster
type: Class
subclass of: MOD_00738
subclass of: MOD_02067
definition: A protein modification that effectively converts an L-cysteine residue to L-cysteinyl hydrogenase diiron subcluster.
diff avg: 342.87
diff formula: C 5 Fe 2 H -1 N 2 O 5 S 2
diff mono: 342.78693
formula: C 8 Fe 2 H 4 N 3 O 6 S 3
mass avg: 446.01
mass mono: 445.7961
origin: C
source: natural
database_cross_reference: Unimod:439
has_exact_synonym: 1,7-biscarbonyl-1-(cystein-S-yl)-8-oxo-4-aza-2lambda(3),6 lambda(3)-dithia-1,7-diferratricyclo[4.2.0.0(2,7)]octane-1,7-dicarbonitrile
has_exact_synonym: L-cysteinyl hydrogenase diiron subcluster
has_exact_synonym: METAL Diiron subcluster
has_exact_synonym: mu-carbonyl-dicarbonyl-1kappaC,2kappaC-dicyanido-1kappaC,2kappaC-cysteinato-1kS-1,2-azadimethanthiol-1kS,2kS'-diiron
has_obo_namespace: PSI-MOD
has_related_synonym: Diironsubcluster
has_related_synonym: hydrogenase diiron subcluster
id: MOD:00339
comment: incidental to RESID:AA0140.

Axiom
annotated source: L-cysteinyl hydrogenase diiron subcluster
annotated property: definition
annotated target: A protein modification that effectively converts an L-cysteine residue to L-cysteinyl hydrogenase diiron subcluster.
database_cross_reference: PubMed:10694885
database_cross_reference: PubMed:9836629
database_cross_reference: RESID:AA0334
database_cross_reference: Unimod:439#C

Axiom
annotated source: L-cysteinyl hydrogenase diiron subcluster
annotated property: has_exact_synonym
annotated target: 1,7-biscarbonyl-1-(cystein-S-yl)-8-oxo-4-aza-2lambda(3),6 lambda(3)-dithia-1,7-diferratricyclo[4.2.0.0(2,7)]octane-1,7-dicarbonitrile
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteinyl hydrogenase diiron subcluster
annotated property: has_exact_synonym
annotated target: L-cysteinyl hydrogenase diiron subcluster
has_synonym_type: Name from RESID

Axiom
annotated source: L-cysteinyl hydrogenase diiron subcluster
annotated property: has_exact_synonym
annotated target: METAL Diiron subcluster
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-cysteinyl hydrogenase diiron subcluster
annotated property: has_exact_synonym
annotated target: mu-carbonyl-dicarbonyl-1kappaC,2kappaC-dicyanido-1kappaC,2kappaC-cysteinato-1kS-1,2-azadimethanthiol-1kS,2kS'-diiron
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-cysteinyl hydrogenase diiron subcluster
annotated property: has_related_synonym
annotated target: Diironsubcluster
has_synonym_type: Agreed label from MS community

Axiom
annotated source: L-cysteinyl hydrogenase diiron subcluster
annotated property: has_related_synonym
annotated target: hydrogenase diiron subcluster
has_synonym_type: Description (full_name) from Unimod

S-amidino-L-cysteine
type: Class
subclass of: MOD_00905
definition: A protein modification that effectively converts an L-cysteine residue to S-amidino-L-cysteine.
diff avg: 42.04
diff formula: C 1 H 2 N 2 O 0 S 0
diff mono: 42.021797
formula: C 4 H 7 N 3 O 1 S 1
mass avg: 145.18
mass mono: 145.03099
origin: C
source: natural
database_cross_reference: Unimod:440
has_exact_synonym: (2R)-2-amino-3-(carbamimidoylsulfanyl)propanoic acid
has_exact_synonym: 2-amino-3-amidinosulfanylpropanoic acid
has_exact_synonym: 2-amino-3-amidinothiopropanoic acid
has_exact_synonym: ACT_SITE Amidino-cysteine intermediate
has_exact_synonym: S-amidino-L-cysteine
has_exact_synonym: S-amidinocysteine
has_exact_synonym: alpha-amino-beta-amidinothiopropionic acid
has_exact_synonym: beta-(S-isothiourea)alanine
has_exact_synonym: beta-amidinothioalanine
has_obo_namespace: PSI-MOD
has_related_synonym: Amidino
has_related_synonym: amidino
id: MOD:00340

Axiom
annotated source: S-amidino-L-cysteine
annotated property: definition
annotated target: A protein modification that effectively converts an L-cysteine residue to S-amidino-L-cysteine.
database_cross_reference: PubMed:9148748
database_cross_reference: RESID:AA0335
database_cross_reference: Unimod:440#C

Axiom
annotated source: S-amidino-L-cysteine
annotated property: has_exact_synonym
annotated target: (2R)-2-amino-3-(carbamimidoylsulfanyl)propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: S-amidino-L-cysteine
annotated property: has_exact_synonym
annotated target: 2-amino-3-amidinosulfanylpropanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-amidino-L-cysteine
annotated property: has_exact_synonym
annotated target: 2-amino-3-amidinothiopropanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-amidino-L-cysteine
annotated property: has_exact_synonym
annotated target: ACT_SITE Amidino-cysteine intermediate
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: S-amidino-L-cysteine
annotated property: has_exact_synonym
annotated target: S-amidino-L-cysteine
has_synonym_type: Name from RESID

Axiom
annotated source: S-amidino-L-cysteine
annotated property: has_exact_synonym
annotated target: S-amidinocysteine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-amidino-L-cysteine
annotated property: has_exact_synonym
annotated target: alpha-amino-beta-amidinothiopropionic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-amidino-L-cysteine
annotated property: has_exact_synonym
annotated target: beta-(S-isothiourea)alanine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-amidino-L-cysteine
annotated property: has_exact_synonym
annotated target: beta-amidinothioalanine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-amidino-L-cysteine
annotated property: has_related_synonym
annotated target: Amidino
has_synonym_type: Agreed label from MS community

Axiom
annotated source: S-amidino-L-cysteine
annotated property: has_related_synonym
annotated target: amidino
has_synonym_type: Description (full_name) from Unimod

N-methyl-L-isoleucine
type: Class
subclass of: MOD_00715
subclass of: MOD_01680
definition: A protein modification that effectively converts an L-isoleucine residue to N-methyl-L-isoleucine.
diff avg: 14.03
diff formula: C 1 H 2 N 0 O 0
diff mono: 14.01565
formula: C 7 H 13 N 1 O 1
mass avg: 127.19
mass mono: 127.09972
origin: I
source: hypothetical
database_cross_reference: uniprot.ptm:PTM-0215
has_exact_synonym: (2S,3S)-2-methylamino-3-methylpentanoic acid
has_exact_synonym: MOD_RES N-methylisoleucine
has_exact_synonym: N-methyl-L-isoleucine
has_exact_synonym: N-methylated L-isoleucine
has_exact_synonym: N-methylisoleucine
has_exact_synonym: NMe1Ile
has_obo_namespace: PSI-MOD
has_related_synonym: Methyl
has_related_synonym: Methylation
id: MOD:00341
comment: Polypeptides with monomethylated amino terminals can undergo premature cleavage during the coupling step of an Edman degradation. This can result in "preview" with both a residue and the following residue being seen from the first step on through a sequence [JSG].

Axiom
annotated source: N-methyl-L-isoleucine
annotated property: definition
annotated target: A protein modification that effectively converts an L-isoleucine residue to N-methyl-L-isoleucine.
database_cross_reference: PubMed:11875433
database_cross_reference: RESID:AA0336

Axiom
annotated source: N-methyl-L-isoleucine
annotated property: has_exact_synonym
annotated target: (2S,3S)-2-methylamino-3-methylpentanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N-methyl-L-isoleucine
annotated property: has_exact_synonym
annotated target: MOD_RES N-methylisoleucine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N-methyl-L-isoleucine
annotated property: has_exact_synonym
annotated target: N-methyl-L-isoleucine
has_synonym_type: Name from RESID

Axiom
annotated source: N-methyl-L-isoleucine
annotated property: has_exact_synonym
annotated target: N-methylated L-isoleucine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: N-methyl-L-isoleucine
annotated property: has_exact_synonym
annotated target: N-methylisoleucine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-methyl-L-isoleucine
annotated property: has_exact_synonym
annotated target: NMe1Ile
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: N-methyl-L-isoleucine
annotated property: has_related_synonym
annotated target: Methyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: N-methyl-L-isoleucine
annotated property: has_related_synonym
annotated target: Methylation
has_synonym_type: Description (full_name) from Unimod

N-methyl-L-leucine
type: Class
subclass of: MOD_01680
subclass of: MOD_01808
definition: A protein modification that effectively converts an L-leucine residue to N-methyl-L-leucine.
diff avg: 14.03
diff formula: C 1 H 2 N 0 O 0
diff mono: 14.01565
formula: C 7 H 13 N 1 O 1
mass avg: 127.19
mass mono: 127.09972
origin: L
source: hypothetical
database_cross_reference: uniprot.ptm:PTM-0216
has_exact_synonym: (S)-2-methylamino-4-methylpentanoic acid
has_exact_synonym: 2-(methylamino)-4-methyl-valeric acid
has_exact_synonym: MOD_RES N-methylleucine
has_exact_synonym: N-methyl-L-leucine
has_exact_synonym: N-methylated L-leucine
has_exact_synonym: N-methylleucine
has_exact_synonym: NMe1Leu
has_obo_namespace: PSI-MOD
has_related_synonym: Methyl
has_related_synonym: Methylation
id: MOD:00342
comment: Polypeptides with monomethylated amino terminals can undergo premature cleavage during the coupling step of an Edman degradation. This can result in "preview" with both a residue and the following residue being seen from the first step on through a sequence [JSG].

Axiom
annotated source: N-methyl-L-leucine
annotated property: definition
annotated target: A protein modification that effectively converts an L-leucine residue to N-methyl-L-leucine.
database_cross_reference: PubMed:11875433
database_cross_reference: RESID:AA0337

Axiom
annotated source: N-methyl-L-leucine
annotated property: has_exact_synonym
annotated target: (S)-2-methylamino-4-methylpentanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N-methyl-L-leucine
annotated property: has_exact_synonym
annotated target: 2-(methylamino)-4-methyl-valeric acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-methyl-L-leucine
annotated property: has_exact_synonym
annotated target: MOD_RES N-methylleucine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N-methyl-L-leucine
annotated property: has_exact_synonym
annotated target: N-methyl-L-leucine
has_synonym_type: Name from RESID

Axiom
annotated source: N-methyl-L-leucine
annotated property: has_exact_synonym
annotated target: N-methylated L-leucine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: N-methyl-L-leucine
annotated property: has_exact_synonym
annotated target: N-methylleucine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-methyl-L-leucine
annotated property: has_exact_synonym
annotated target: NMe1Leu
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: N-methyl-L-leucine
annotated property: has_related_synonym
annotated target: Methyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: N-methyl-L-leucine
annotated property: has_related_synonym
annotated target: Methylation
has_synonym_type: Description (full_name) from Unimod

N-methyl-L-tyrosine
type: Class
subclass of: MOD_00718
subclass of: MOD_01680
definition: A protein modification that effectively converts an L-tyrosine residue to N-methyl-L-tyrosine.
diff avg: 14.03
diff formula: C 1 H 2 N 0 O 0
diff mono: 14.01565
formula: C 10 H 11 N 1 O 2
mass avg: 177.2
mass mono: 177.07898
origin: Y
source: hypothetical
database_cross_reference: uniprot.ptm:PTM-0220
has_exact_synonym: (2S)-3-(4-hydroxyphenyl)-2-(methylamino)propanoic acid
has_exact_synonym: MOD_RES N-methyltyrosine
has_exact_synonym: N-methyl Tyrosinyl
has_exact_synonym: N-methyl-L-tyrosine
has_exact_synonym: N-methylated L-tyrosine
has_exact_synonym: N-methyltyrosine
has_exact_synonym: NMe1Tyr
has_obo_namespace: PSI-MOD
has_related_synonym: Methyl
id: MOD:00343
comment: Polypeptides with monomethylated amino terminals can undergo premature cleavage during the coupling step of an Edman degradation. This can result in "preview" with both a residue and the following residue being seen from the first step on through a sequence [JSG].

Axiom
annotated source: N-methyl-L-tyrosine
annotated property: definition
annotated target: A protein modification that effectively converts an L-tyrosine residue to N-methyl-L-tyrosine.
database_cross_reference: DeltaMass:0
database_cross_reference: RESID:AA0338

Axiom
annotated source: N-methyl-L-tyrosine
annotated property: has_exact_synonym
annotated target: (2S)-3-(4-hydroxyphenyl)-2-(methylamino)propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N-methyl-L-tyrosine
annotated property: has_exact_synonym
annotated target: MOD_RES N-methyltyrosine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N-methyl-L-tyrosine
annotated property: has_exact_synonym
annotated target: N-methyl Tyrosinyl
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: N-methyl-L-tyrosine
annotated property: has_exact_synonym
annotated target: N-methyl-L-tyrosine
has_synonym_type: Name from RESID

Axiom
annotated source: N-methyl-L-tyrosine
annotated property: has_exact_synonym
annotated target: N-methylated L-tyrosine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: N-methyl-L-tyrosine
annotated property: has_exact_synonym
annotated target: N-methyltyrosine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-methyl-L-tyrosine
annotated property: has_exact_synonym
annotated target: NMe1Tyr
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: N-methyl-L-tyrosine
annotated property: has_related_synonym
annotated target: Methyl
has_synonym_type: Agreed label from MS community

N-palmitoylglycine
type: Class
subclass of: MOD_00908
subclass of: MOD_01685
definition: A protein modification that effectively converts a glycine residue to N-palmitoylglycine.
diff avg: 238.41
diff formula: C 16 H 30 N 0 O 1 S 0
diff mono: 238.22966
formula: C 18 H 34 N 1 O 2
mass avg: 296.47
mass mono: 296.25894
origin: G
source: natural
term spec: N-term
database_cross_reference: uniprot.ptm:PTM-0223
has_exact_synonym: (hexadecanamido)acetic acid
has_exact_synonym: (hexadecanoylamino)acetic acid
has_exact_synonym: (hexadecanoylamino)ethanoic acid
has_exact_synonym: LIPID N-palmitoyl glycine
has_exact_synonym: N-(1-oxohexadecyl)glycine
has_exact_synonym: N-hexadecanoylated glycine
has_exact_synonym: N-palmitoyl-glycine
has_exact_synonym: N-palmitoylated glycine
has_exact_synonym: NPamGly
has_obo_namespace: PSI-MOD
id: MOD:00344
in_subset: PSI-MOD-slim
comment: incidental to RESID:AA0060

Axiom
annotated source: N-palmitoylglycine
annotated property: definition
annotated target: A protein modification that effectively converts a glycine residue to N-palmitoylglycine.
database_cross_reference: PubMed:12574119
database_cross_reference: RESID:AA0339

Axiom
annotated source: N-palmitoylglycine
annotated property: has_exact_synonym
annotated target: (hexadecanamido)acetic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-palmitoylglycine
annotated property: has_exact_synonym
annotated target: (hexadecanoylamino)acetic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-palmitoylglycine
annotated property: has_exact_synonym
annotated target: (hexadecanoylamino)ethanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N-palmitoylglycine
annotated property: has_exact_synonym
annotated target: LIPID N-palmitoyl glycine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N-palmitoylglycine
annotated property: has_exact_synonym
annotated target: N-(1-oxohexadecyl)glycine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-palmitoylglycine
annotated property: has_exact_synonym
annotated target: N-hexadecanoylated glycine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: N-palmitoylglycine
annotated property: has_exact_synonym
annotated target: N-palmitoyl-glycine
has_synonym_type: Name from RESID

Axiom
annotated source: N-palmitoylglycine
annotated property: has_exact_synonym
annotated target: N-palmitoylated glycine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: N-palmitoylglycine
annotated property: has_exact_synonym
annotated target: NPamGly
has_synonym_type: Short label curated by PSI-MOD

2-(S-L-cysteinyl)-L-phenylalanine
type: Class
subclass of: MOD_01992
subclass of: MOD_02053
definition: A protein modification that effectively cross-links an L-cysteine residue and an L-phenylalanine residue by a thioether bond to form 2-(S-L-cysteinyl)-L-phenylalanine.
diff avg: -2.02
diff formula: C 0 H -2 N 0 O 0 S 0
diff mono: -2.01565
formula: C 12 H 12 N 2 O 2 S 1
mass avg: 248.3
mass mono: 248.06195
origin: C, F
source: natural
database_cross_reference: uniprot.ptm:PTM-0012
has_exact_synonym: (2R)-2-amino-2-[(2R)-2-amino-2-carboxyethyl]sulfanyl-3-phenylpropanoic acid
has_exact_synonym: (2R,5R)-2,5-diamino-3-thia-2-phenylmethylhexanedioic acid
has_exact_synonym: 2-(L-cystein-S-yl)-L-phenylalanine
has_exact_synonym: CROSSLNK 2-cysteinyl-L-phenylalanine (Cys-Phe)
has_exact_synonym: alpha-(L-cystein-S-yl)-L-phenylalanine
has_obo_namespace: PSI-MOD
id: MOD:00345
comment: Cross-link 2.

Axiom
annotated source: 2-(S-L-cysteinyl)-L-phenylalanine
annotated property: definition
annotated target: A protein modification that effectively cross-links an L-cysteine residue and an L-phenylalanine residue by a thioether bond to form 2-(S-L-cysteinyl)-L-phenylalanine.
database_cross_reference: PubMed:12696888
database_cross_reference: PubMed:3936839
database_cross_reference: RESID:AA0340

Axiom
annotated source: 2-(S-L-cysteinyl)-L-phenylalanine
annotated property: has_exact_synonym
annotated target: (2R)-2-amino-2-[(2R)-2-amino-2-carboxyethyl]sulfanyl-3-phenylpropanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: 2-(S-L-cysteinyl)-L-phenylalanine
annotated property: has_exact_synonym
annotated target: (2R,5R)-2,5-diamino-3-thia-2-phenylmethylhexanedioic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 2-(S-L-cysteinyl)-L-phenylalanine
annotated property: has_exact_synonym
annotated target: 2-(L-cystein-S-yl)-L-phenylalanine
has_synonym_type: Name from RESID

Axiom
annotated source: 2-(S-L-cysteinyl)-L-phenylalanine
annotated property: has_exact_synonym
annotated target: CROSSLNK 2-cysteinyl-L-phenylalanine (Cys-Phe)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: 2-(S-L-cysteinyl)-L-phenylalanine
annotated property: has_exact_synonym
annotated target: alpha-(L-cystein-S-yl)-L-phenylalanine
has_synonym_type: Alternate name from RESID

2-(S-L-cysteinyl)-D-phenylalanine
type: Class
subclass of: MOD_00664
subclass of: MOD_01992
subclass of: MOD_02053
definition: A protein modification that effectively cross-links an L-cysteine residue and an L-phenylalanine residue by a thioether bond to form 2-(S-L-cysteinyl)-D-phenylalanine.
diff avg: -2.02
diff formula: C 0 H -2 N 0 O 0 S 0
diff mono: -2.01565
formula: C 12 H 12 N 2 O 2 S 1
mass avg: 248.3
mass mono: 248.06195
origin: C, F
source: natural
database_cross_reference: uniprot.ptm:PTM-0011
has_exact_synonym: (2S)-2-amino-2-[(2R)-2-amino-2-carboxyethyl]sulfanyl-3-phenylpropanoic acid
has_exact_synonym: (2S,5R)-2,5-diamino-3-thia-2-phenylmethylhexanedioic acid
has_exact_synonym: 2-(L-cystein-S-yl)-D-phenylalanine
has_exact_synonym: CROSSLNK 2-cysteinyl-D-phenylalanine (Cys-Phe)
has_exact_synonym: alpha-(L-cystein-S-yl)-D-phenylalanine
has_obo_namespace: PSI-MOD
id: MOD:00346
comment: Cross-link 2.

Axiom
annotated source: 2-(S-L-cysteinyl)-D-phenylalanine
annotated property: definition
annotated target: A protein modification that effectively cross-links an L-cysteine residue and an L-phenylalanine residue by a thioether bond to form 2-(S-L-cysteinyl)-D-phenylalanine.
database_cross_reference: PubMed:12696888
database_cross_reference: PubMed:3936839
database_cross_reference: RESID:AA0341

Axiom
annotated source: 2-(S-L-cysteinyl)-D-phenylalanine
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-2-[(2R)-2-amino-2-carboxyethyl]sulfanyl-3-phenylpropanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: 2-(S-L-cysteinyl)-D-phenylalanine
annotated property: has_exact_synonym
annotated target: (2S,5R)-2,5-diamino-3-thia-2-phenylmethylhexanedioic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 2-(S-L-cysteinyl)-D-phenylalanine
annotated property: has_exact_synonym
annotated target: 2-(L-cystein-S-yl)-D-phenylalanine
has_synonym_type: Name from RESID

Axiom
annotated source: 2-(S-L-cysteinyl)-D-phenylalanine
annotated property: has_exact_synonym
annotated target: CROSSLNK 2-cysteinyl-D-phenylalanine (Cys-Phe)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: 2-(S-L-cysteinyl)-D-phenylalanine
annotated property: has_exact_synonym
annotated target: alpha-(L-cystein-S-yl)-D-phenylalanine
has_synonym_type: Alternate name from RESID

2-(S-L-cysteinyl)-D-allo-threonine
type: Class
subclass of: MOD_00664
subclass of: MOD_01992
subclass of: MOD_02056
definition: A protein modification that effectively cross-links an L-cysteine residue and an L-threonine residue by a thioether bond to form 2-(S-L-cysteinyl)-D-allo-threonine.
diff avg: -2.02
diff formula: C 0 H -2 N 0 O 0 S 0
diff mono: -2.01565
formula: C 7 H 10 N 2 O 3 S 1
mass avg: 202.23
mass mono: 202.04121
origin: C, T
source: natural
database_cross_reference: uniprot.ptm:PTM-0010
has_exact_synonym: (2R,5S,6R)-2,5-diamino-5-carboxy-6-hydroxy-4-thiaheptanoic acid
has_exact_synonym: (2S,3R)-2-amino-2-[(2R)-2-amino-2-carboxyethyl]sulfanyl-3-hydroxybutanoic acid
has_exact_synonym: 2-(L-cystein-S-yl)-D-allo-threonine
has_exact_synonym: CROSSLNK 2-cysteinyl-D-allo-threonine (Cys-Thr)
has_exact_synonym: alpha-(L-cystein-S-yl)-D-allo-threonine
has_obo_namespace: PSI-MOD
id: MOD:00347
comment: Cross-link 2.

Axiom
annotated source: 2-(S-L-cysteinyl)-D-allo-threonine
annotated property: definition
annotated target: A protein modification that effectively cross-links an L-cysteine residue and an L-threonine residue by a thioether bond to form 2-(S-L-cysteinyl)-D-allo-threonine.
database_cross_reference: PubMed:12696888
database_cross_reference: PubMed:3936839
database_cross_reference: RESID:AA0342

Axiom
annotated source: 2-(S-L-cysteinyl)-D-allo-threonine
annotated property: has_exact_synonym
annotated target: (2R,5S,6R)-2,5-diamino-5-carboxy-6-hydroxy-4-thiaheptanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 2-(S-L-cysteinyl)-D-allo-threonine
annotated property: has_exact_synonym
annotated target: (2S,3R)-2-amino-2-[(2R)-2-amino-2-carboxyethyl]sulfanyl-3-hydroxybutanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: 2-(S-L-cysteinyl)-D-allo-threonine
annotated property: has_exact_synonym
annotated target: 2-(L-cystein-S-yl)-D-allo-threonine
has_synonym_type: Name from RESID

Axiom
annotated source: 2-(S-L-cysteinyl)-D-allo-threonine
annotated property: has_exact_synonym
annotated target: CROSSLNK 2-cysteinyl-D-allo-threonine (Cys-Thr)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: 2-(S-L-cysteinyl)-D-allo-threonine
annotated property: has_exact_synonym
annotated target: alpha-(L-cystein-S-yl)-D-allo-threonine
has_synonym_type: Alternate name from RESID

N-carbamoyl-L-alanine
type: Class
subclass of: MOD_00901
subclass of: MOD_01679
definition: A protein modification that effectively converts an L-alanine residue to N-carbamoyl-L-alanine.
diff avg: 43.02
diff formula: C 1 H 1 N 1 O 1
diff mono: 43.005814
formula: C 4 H 7 N 2 O 2
mass avg: 115.11
mass mono: 115.05075
origin: A
source: natural
term spec: N-term
database_cross_reference: uniprot.ptm:PTM-0374
has_exact_synonym: (S)-2-(carbamoylamino)propanoic acid
has_exact_synonym: 2-ureidopropanoic acid
has_exact_synonym: MOD_RES N-carbamoylalanine
has_exact_synonym: N-carbamoyl-L-alanine
has_exact_synonym: N-carbamylalanine
has_exact_synonym: N2CbmAla
has_obo_namespace: PSI-MOD
id: MOD:00348

Axiom
annotated source: N-carbamoyl-L-alanine
annotated property: definition
annotated target: A protein modification that effectively converts an L-alanine residue to N-carbamoyl-L-alanine.
database_cross_reference: PubMed:12203680
database_cross_reference: RESID:AA0343

Axiom
annotated source: N-carbamoyl-L-alanine
annotated property: has_exact_synonym
annotated target: (S)-2-(carbamoylamino)propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N-carbamoyl-L-alanine
annotated property: has_exact_synonym
annotated target: 2-ureidopropanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-carbamoyl-L-alanine
annotated property: has_exact_synonym
annotated target: MOD_RES N-carbamoylalanine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N-carbamoyl-L-alanine
annotated property: has_exact_synonym
annotated target: N-carbamoyl-L-alanine
has_synonym_type: Name from RESID

Axiom
annotated source: N-carbamoyl-L-alanine
annotated property: has_exact_synonym
annotated target: N-carbamylalanine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-carbamoyl-L-alanine
annotated property: has_exact_synonym
annotated target: N2CbmAla
has_synonym_type: Short label curated by PSI-MOD

4-amino-3-isothiazolidinone-L-serine
type: Class
subclass of: MOD_01861
subclass of: MOD_02044
subclass of: MOD_02055
definition: A protein modification that effectively crosslinks an L-cysteine residue and an L-serine residue to form 4-amino-3-isothiazolidinone-L-serine.
diff avg: -2.02
diff formula: C 0 H -2 N 0 O 0 S 0
diff mono: -2.01565
formula: C 6 H 8 N 2 O 3 S 1
mass avg: 188.2
mass mono: 188.02556
origin: C, S
source: natural
database_cross_reference: uniprot.ptm:PTM-0037
has_exact_synonym: (2S)-2-[(4R)-4-amino-3-oxo-1,2-thiazolidin-2-yl]-3-hydroxypropanoic acid
has_exact_synonym: 2-(4-amino-3-oxo-isothiazolidin-2-yl)-3-hydroxy-propanoic acid
has_exact_synonym: 4-amino-3-isothiazolidinone-L-serine
has_exact_synonym: CROSSLNK N,N-(cysteine-1,S-diyl)serine (Cys-Ser)
has_exact_synonym: N,N-(L-cysteine-1,S-diyl)-L-serine
has_exact_synonym: serine-cysteine sulfenyl amide cross-link
has_exact_synonym: serine-cysteine sulphenyl amide cross-link
has_obo_namespace: PSI-MOD
id: MOD:00349
comment: Cross-link 2.

Axiom
annotated source: 4-amino-3-isothiazolidinone-L-serine
annotated property: definition
annotated target: A protein modification that effectively crosslinks an L-cysteine residue and an L-serine residue to form 4-amino-3-isothiazolidinone-L-serine.
database_cross_reference: PubMed:12802338
database_cross_reference: PubMed:12802339
database_cross_reference: RESID:AA0344

Axiom
annotated source: 4-amino-3-isothiazolidinone-L-serine
annotated property: has_exact_synonym
annotated target: (2S)-2-[(4R)-4-amino-3-oxo-1,2-thiazolidin-2-yl]-3-hydroxypropanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: 4-amino-3-isothiazolidinone-L-serine
annotated property: has_exact_synonym
annotated target: 2-(4-amino-3-oxo-isothiazolidin-2-yl)-3-hydroxy-propanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 4-amino-3-isothiazolidinone-L-serine
annotated property: has_exact_synonym
annotated target: 4-amino-3-isothiazolidinone-L-serine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 4-amino-3-isothiazolidinone-L-serine
annotated property: has_exact_synonym
annotated target: CROSSLNK N,N-(cysteine-1,S-diyl)serine (Cys-Ser)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: 4-amino-3-isothiazolidinone-L-serine
annotated property: has_exact_synonym
annotated target: N,N-(L-cysteine-1,S-diyl)-L-serine
has_synonym_type: Name from RESID

Axiom
annotated source: 4-amino-3-isothiazolidinone-L-serine
annotated property: has_exact_synonym
annotated target: serine-cysteine sulfenyl amide cross-link
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 4-amino-3-isothiazolidinone-L-serine
annotated property: has_exact_synonym
annotated target: serine-cysteine sulphenyl amide cross-link
has_synonym_type: Alternate name from RESID

L-threonyl-pentaglycyl-murein peptidoglycan
type: Class
subclass of: MOD_00917
subclass of: MOD_01159
definition: A protein modification that effectively attaches an L-threonine residue to murein peptidoglycan by a pentaglycine linker peptide.
origin: T
source: natural
term spec: C-term
database_cross_reference: uniprot.ptm:PTM-0246
has_exact_synonym: (2R,6S)-2-(N-mureinyl-(R)-alanyl-(S)-isoglutamyl)amino-6-(threonyl-pentaglycyl)amino-pimeloyl-(S)-alanyl-(S)-alanine
has_exact_synonym: L-threonyl-pentaglycyl-murein peptidoglycan
has_exact_synonym: MOD_RES Pentaglycyl murein peptidoglycan amidated threonine
has_obo_namespace: PSI-MOD
id: MOD:00350

Axiom
annotated source: L-threonyl-pentaglycyl-murein peptidoglycan
annotated property: definition
annotated target: A protein modification that effectively attaches an L-threonine residue to murein peptidoglycan by a pentaglycine linker peptide.
database_cross_reference: PubMed:10754567
database_cross_reference: PubMed:1638631
database_cross_reference: RESID:AA0345

Axiom
annotated source: L-threonyl-pentaglycyl-murein peptidoglycan
annotated property: has_exact_synonym
annotated target: (2R,6S)-2-(N-mureinyl-(R)-alanyl-(S)-isoglutamyl)amino-6-(threonyl-pentaglycyl)amino-pimeloyl-(S)-alanyl-(S)-alanine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-threonyl-pentaglycyl-murein peptidoglycan
annotated property: has_exact_synonym
annotated target: L-threonyl-pentaglycyl-murein peptidoglycan
has_synonym_type: Name from RESID

Axiom
annotated source: L-threonyl-pentaglycyl-murein peptidoglycan
annotated property: has_exact_synonym
annotated target: MOD_RES Pentaglycyl murein peptidoglycan amidated threonine
has_synonym_type: Protein feature description from UniProtKB

N-glycyl-1-(phosphatidyl)ethanolamine
type: Class
subclass of: MOD_00908
subclass of: MOD_01155
definition: A protein modification that effectively converts a glycine residue to N-glycyl-1-(phosphatidyl)ethanolamine.
diff avg: 699.99
diff formula: C 39 H 74 N 1 O 7 P 1
diff mono: 699.52026
formula: C 41 H 78 N 2 O 9 P 1
mass avg: 774.05
mass mono: 773.5445
origin: G
source: natural
term spec: C-term
database_cross_reference: uniprot.ptm:PTM-0249
has_exact_synonym: LIPID Phosphatidylethanolamine amidated glycine
has_exact_synonym: N-glycyl-1-(phosphatidyl)ethanolamine
has_exact_synonym: N-glycyl-1-palmitoyl-2-oleoyl-sn-glycero-3-phosphoethanolamine
has_obo_namespace: PSI-MOD
id: MOD:00351

Axiom
annotated source: N-glycyl-1-(phosphatidyl)ethanolamine
annotated property: definition
annotated target: A protein modification that effectively converts a glycine residue to N-glycyl-1-(phosphatidyl)ethanolamine.
database_cross_reference: PubMed:11100732
database_cross_reference: RESID:AA0346

Axiom
annotated source: N-glycyl-1-(phosphatidyl)ethanolamine
annotated property: has_exact_synonym
annotated target: LIPID Phosphatidylethanolamine amidated glycine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N-glycyl-1-(phosphatidyl)ethanolamine
annotated property: has_exact_synonym
annotated target: N-glycyl-1-(phosphatidyl)ethanolamine
has_synonym_type: Name from RESID

Axiom
annotated source: N-glycyl-1-(phosphatidyl)ethanolamine
annotated property: has_exact_synonym
annotated target: N-glycyl-1-palmitoyl-2-oleoyl-sn-glycero-3-phosphoethanolamine
has_synonym_type: Alternate name from RESID

L-glutamyl 5-omega-hydroxyceramide ester
type: Class
subclass of: MOD_00907
subclass of: MOD_01155
definition: A protein modification that effectively converts an L-glutamic acid residue to L-glutamyl 5-omega-hydroxyceramide ester.
diff avg: 761.31
diff formula: C 50 H 96 N 0 O 4
diff mono: 760.73083
formula: C 55 H 104 N 2 O 6
mass avg: 889.44
mass mono: 888.7894
origin: Q
source: natural
database_cross_reference: uniprot.ptm:PTM-0236
has_exact_synonym: (S)-2-amino-5-[30-((2S,3R,4E)-1,3-dihydroxyicos-4-en-2-ylamino)-30-oxotriacontan-1-yloxy]-5-oxopentanoic acid
has_exact_synonym: L-glutamyl 5-omega-hydroxyceramide ester
has_exact_synonym: LIPID Omega-hydroxyceramide glutamate ester
has_obo_namespace: PSI-MOD
id: MOD:00352

Axiom
annotated source: L-glutamyl 5-omega-hydroxyceramide ester
annotated property: definition
annotated target: A protein modification that effectively converts an L-glutamic acid residue to L-glutamyl 5-omega-hydroxyceramide ester.
database_cross_reference: PubMed:10411887
database_cross_reference: PubMed:9651377
database_cross_reference: RESID:AA0347

Axiom
annotated source: L-glutamyl 5-omega-hydroxyceramide ester
annotated property: has_exact_synonym
annotated target: (S)-2-amino-5-[30-((2S,3R,4E)-1,3-dihydroxyicos-4-en-2-ylamino)-30-oxotriacontan-1-yloxy]-5-oxopentanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-glutamyl 5-omega-hydroxyceramide ester
annotated property: has_exact_synonym
annotated target: L-glutamyl 5-omega-hydroxyceramide ester
has_synonym_type: Name from RESID

Axiom
annotated source: L-glutamyl 5-omega-hydroxyceramide ester
annotated property: has_exact_synonym
annotated target: LIPID Omega-hydroxyceramide glutamate ester
has_synonym_type: Protein feature description from UniProtKB

S-[5'-(L-tryptoph-6'-yl)-L-tyrosin-3'-yl]-L-methionin-S-ium
type: Class
subclass of: MOD_00692
subclass of: MOD_02052
subclass of: MOD_02057
subclass of: MOD_02058
definition: A protein modification that effectively cross-links an L-tryptophan residue with an L-tyrosine residue by a carbon-carbon bond, and cross-links the L-tyrosine residue to an L-methionine residue by a thioether bond to form S-[5'-(L-tryptoph-6'-yl)-L-tyrosin-3'-yl]-L-methionin-S-ium.
diff avg: -3.02
diff formula: C 0 H -3 N 0 O 0 S 0
diff mono: -3.024024
formal charge: 1+
formula: C 25 H 25 N 4 O 4 S 1
mass avg: 477.56
mass mono: 477.1591
origin: M, W, Y
source: natural
database_cross_reference: uniprot.ptm:PTM-0328
has_exact_synonym: 5'-(6'-tryptophyl)-tyrosin-3'-yl-methionin-S-ium
has_exact_synonym: S-[5'-(L-tryptoph-6'-yl)-L-tyrosin-3'-yl]-L-methionin-S-ium
has_obo_namespace: PSI-MOD
id: MOD:00353
comment: Cross-link 3.

Axiom
annotated source: S-[5'-(L-tryptoph-6'-yl)-L-tyrosin-3'-yl]-L-methionin-S-ium
annotated property: definition
annotated target: A protein modification that effectively cross-links an L-tryptophan residue with an L-tyrosine residue by a carbon-carbon bond, and cross-links the L-tyrosine residue to an L-methionine residue by a thioether bond to form S-[5'-(L-tryptoph-6'-yl)-L-tyrosin-3'-yl]-L-methionin-S-ium.
database_cross_reference: PubMed:12172540
database_cross_reference: PubMed:16285713
database_cross_reference: RESID:AA0348

Axiom
annotated source: S-[5'-(L-tryptoph-6'-yl)-L-tyrosin-3'-yl]-L-methionin-S-ium
annotated property: has_exact_synonym
annotated target: 5'-(6'-tryptophyl)-tyrosin-3'-yl-methionin-S-ium
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-[5'-(L-tryptoph-6'-yl)-L-tyrosin-3'-yl]-L-methionin-S-ium
annotated property: has_exact_synonym
annotated target: S-[5'-(L-tryptoph-6'-yl)-L-tyrosin-3'-yl]-L-methionin-S-ium
has_synonym_type: Name from RESID

O-(riboflavin phosphoryl)-L-threonine
type: Class
subclass of: MOD_00917
subclass of: MOD_01164
definition: A protein modification that effectively converts an L-threonine residue to O-(riboflavin phosphoryl)-L-threonine.
diff avg: 438.33
diff formula: C 17 H 19 N 4 O 8 P 1
diff mono: 438.09406
formula: C 21 H 26 N 5 O 10 P 1
mass avg: 539.44
mass mono: 539.1417
origin: T
source: natural
database_cross_reference: Unimod:442
database_cross_reference: uniprot.ptm:PTM-0126
has_exact_synonym: (2S,3R)-2-amino-3-(riboflavin 5'-hydrogen phosphonoxy)butanoic acid
has_exact_synonym: MOD_RES FMN phosphoryl threonine
has_exact_synonym: O-(riboflavin phosphoryl)-L-threonine
has_exact_synonym: O3-threonyl FMN
has_exact_synonym: O3-threonyl flavin mononucleotide
has_exact_synonym: OFMNThr
has_obo_namespace: PSI-MOD
has_related_synonym: FMN
has_related_synonym: O3-(riboflavin phosphoryl)
id: MOD:00354
in_subset: PSI-MOD-slim

Axiom
annotated source: O-(riboflavin phosphoryl)-L-threonine
annotated property: definition
annotated target: A protein modification that effectively converts an L-threonine residue to O-(riboflavin phosphoryl)-L-threonine.
database_cross_reference: PubMed:10587447
database_cross_reference: PubMed:11163785
database_cross_reference: PubMed:11248234
database_cross_reference: RESID:AA0349
database_cross_reference: Unimod:442#T

Axiom
annotated source: O-(riboflavin phosphoryl)-L-threonine
annotated property: has_exact_synonym
annotated target: (2S,3R)-2-amino-3-(riboflavin 5'-hydrogen phosphonoxy)butanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: O-(riboflavin phosphoryl)-L-threonine
annotated property: has_exact_synonym
annotated target: MOD_RES FMN phosphoryl threonine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: O-(riboflavin phosphoryl)-L-threonine
annotated property: has_exact_synonym
annotated target: O-(riboflavin phosphoryl)-L-threonine
has_synonym_type: Name from RESID

Axiom
annotated source: O-(riboflavin phosphoryl)-L-threonine
annotated property: has_exact_synonym
annotated target: O3-threonyl FMN
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-(riboflavin phosphoryl)-L-threonine
annotated property: has_exact_synonym
annotated target: O3-threonyl flavin mononucleotide
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-(riboflavin phosphoryl)-L-threonine
annotated property: has_exact_synonym
annotated target: OFMNThr
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: O-(riboflavin phosphoryl)-L-threonine
annotated property: has_related_synonym
annotated target: FMN
has_synonym_type: Agreed label from MS community

Axiom
annotated source: O-(riboflavin phosphoryl)-L-threonine
annotated property: has_related_synonym
annotated target: O3-(riboflavin phosphoryl)
has_synonym_type: Description (full_name) from Unimod

O-(riboflavin phosphoryl)-L-serine
type: Class
subclass of: MOD_00916
subclass of: MOD_01164
definition: A protein modification that effectively converts an L-serine residue to O-(riboflavin phosphoryl)-L-serine.
diff avg: 438.33
diff formula: C 17 H 19 N 4 O 8 P 1
diff mono: 438.09406
formula: C 20 H 24 N 5 O 10 P 1
mass avg: 525.41
mass mono: 525.1261
origin: S
source: natural
database_cross_reference: Unimod:442
database_cross_reference: uniprot.ptm:PTM-0125
has_exact_synonym: (R)-2-amino-3-(riboflavin 5'-hydrogen phosphonoxy)propanoic acid
has_exact_synonym: MOD_RES FMN phosphoryl serine
has_exact_synonym: O-(riboflavin phosphoryl)-L-serine
has_exact_synonym: O3-seryl FMN
has_exact_synonym: O3-seryl flavin mononucleotide
has_exact_synonym: OFMNSer
has_obo_namespace: PSI-MOD
has_related_synonym: FMN
has_related_synonym: O3-(riboflavin phosphoryl)
id: MOD:00355
in_subset: PSI-MOD-slim

Axiom
annotated source: O-(riboflavin phosphoryl)-L-serine
annotated property: definition
annotated target: A protein modification that effectively converts an L-serine residue to O-(riboflavin phosphoryl)-L-serine.
database_cross_reference: RESID:AA0350
database_cross_reference: Unimod:442#S

Axiom
annotated source: O-(riboflavin phosphoryl)-L-serine
annotated property: has_exact_synonym
annotated target: (R)-2-amino-3-(riboflavin 5'-hydrogen phosphonoxy)propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: O-(riboflavin phosphoryl)-L-serine
annotated property: has_exact_synonym
annotated target: MOD_RES FMN phosphoryl serine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: O-(riboflavin phosphoryl)-L-serine
annotated property: has_exact_synonym
annotated target: O-(riboflavin phosphoryl)-L-serine
has_synonym_type: Name from RESID

Axiom
annotated source: O-(riboflavin phosphoryl)-L-serine
annotated property: has_exact_synonym
annotated target: O3-seryl FMN
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-(riboflavin phosphoryl)-L-serine
annotated property: has_exact_synonym
annotated target: O3-seryl flavin mononucleotide
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-(riboflavin phosphoryl)-L-serine
annotated property: has_exact_synonym
annotated target: OFMNSer
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: O-(riboflavin phosphoryl)-L-serine
annotated property: has_related_synonym
annotated target: FMN
has_synonym_type: Agreed label from MS community

Axiom
annotated source: O-(riboflavin phosphoryl)-L-serine
annotated property: has_related_synonym
annotated target: O3-(riboflavin phosphoryl)
has_synonym_type: Description (full_name) from Unimod

S-(4alpha-FMN)-L-cysteine
type: Class
subclass of: MOD_00905
subclass of: MOD_02083
definition: A protein modification that effectively converts an L-cysteine residue to S-(4a-FMN)-L-cysteine.
diff avg: 456.35
diff formula: C 17 H 21 N 4 O 9 P 1 S 0
diff mono: 456.1046
formula: C 20 H 26 N 5 O 10 P 1 S 1
mass avg: 559.49
mass mono: 559.1138
origin: C
source: natural
database_cross_reference: Unimod:443
database_cross_reference: uniprot.ptm:PTM-0270
has_exact_synonym: (R)-2-amino-3-(4a-riboflavin 5'-dihydrogen phosphate)sulfanylpropanoic acid
has_exact_synonym: 4a-(S-cysteinyl)FMN
has_exact_synonym: 4a-(S-cysteinyl)flavin mononucleotide
has_exact_synonym: MOD_RES S-4a-FMN cysteine
has_exact_synonym: S-(4a-FMN)-L-cysteine
has_exact_synonym: S4aFMNCys
has_obo_namespace: PSI-MOD
has_related_synonym: FMNC
has_related_synonym: S-(4a-FMN)
id: MOD:00356
in_subset: PSI-MOD-slim

Axiom
annotated source: S-(4alpha-FMN)-L-cysteine
annotated property: definition
annotated target: A protein modification that effectively converts an L-cysteine residue to S-(4a-FMN)-L-cysteine.
database_cross_reference: PubMed:12668455
database_cross_reference: PubMed:12846567
database_cross_reference: PubMed:7692961
database_cross_reference: RESID:AA0351
database_cross_reference: Unimod:443#C

Axiom
annotated source: S-(4alpha-FMN)-L-cysteine
annotated property: has_exact_synonym
annotated target: (R)-2-amino-3-(4a-riboflavin 5'-dihydrogen phosphate)sulfanylpropanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: S-(4alpha-FMN)-L-cysteine
annotated property: has_exact_synonym
annotated target: 4a-(S-cysteinyl)FMN
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-(4alpha-FMN)-L-cysteine
annotated property: has_exact_synonym
annotated target: 4a-(S-cysteinyl)flavin mononucleotide
has_synonym_type: Alternate name from RESID

Axiom
annotated source: S-(4alpha-FMN)-L-cysteine
annotated property: has_exact_synonym
annotated target: MOD_RES S-4a-FMN cysteine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: S-(4alpha-FMN)-L-cysteine
annotated property: has_exact_synonym
annotated target: S-(4a-FMN)-L-cysteine
has_synonym_type: Name from RESID

Axiom
annotated source: S-(4alpha-FMN)-L-cysteine
annotated property: has_exact_synonym
annotated target: S4aFMNCys
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: S-(4alpha-FMN)-L-cysteine
annotated property: has_related_synonym
annotated target: FMNC
has_synonym_type: Agreed label from MS community

Axiom
annotated source: S-(4alpha-FMN)-L-cysteine
annotated property: has_related_synonym
annotated target: S-(4a-FMN)
has_synonym_type: Description (full_name) from Unimod

1'-(8alpha-FMN)-L-histidine
type: Class
subclass of: MOD_00909
subclass of: MOD_02085
definition: A protein modification that effectively converts an L-histidine residue to 1'-(8alpha-FMN)-L-histidine.
diff avg: 454.33
diff formula: C 17 H 19 N 4 O 9 P 1
diff mono: 454.08896
formula: C 23 H 26 N 7 O 10 P 1
mass avg: 591.47
mass mono: 591.1479
origin: H
source: natural
database_cross_reference: Unimod:409
database_cross_reference: uniprot.ptm:PTM-0289
has_exact_synonym: (S)-2-amino-3-(1-[8alpha riboflavin 5'-dihydrogen phosphate]imidazol-4-yl)propanoic acid
has_exact_synonym: 1'-(8alpha-FMN)-L-histidine
has_exact_synonym: 8alpha-(N(epsilon)-histidyl)FMN
has_exact_synonym: 8alpha-(N1'-histidyl)FMN
has_exact_synonym: MOD_RES Tele-8alpha-FMN histidine
has_exact_synonym: N(tau)-(8alpha-FMN)-histidine
has_exact_synonym: Ntele8aFMNHis
has_exact_synonym: tele-(8alpha-FMN)-histidine
has_obo_namespace: PSI-MOD
has_related_synonym: FMNH
has_related_synonym: flavin mononucleotide
id: MOD:00357
in_subset: PSI-MOD-slim

Axiom
annotated source: 1'-(8alpha-FMN)-L-histidine
annotated property: definition
annotated target: A protein modification that effectively converts an L-histidine residue to 1'-(8alpha-FMN)-L-histidine.
database_cross_reference: PubMed:11902668
database_cross_reference: PubMed:8611516
database_cross_reference: RESID:AA0352
database_cross_reference: Unimod:409#H

Axiom
annotated source: 1'-(8alpha-FMN)-L-histidine
annotated property: has_exact_synonym
annotated target: (S)-2-amino-3-(1-[8alpha riboflavin 5'-dihydrogen phosphate]imidazol-4-yl)propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: 1'-(8alpha-FMN)-L-histidine
annotated property: has_exact_synonym
annotated target: 1'-(8alpha-FMN)-L-histidine
has_synonym_type: Name from RESID

Axiom
annotated source: 1'-(8alpha-FMN)-L-histidine
annotated property: has_exact_synonym
annotated target: 8alpha-(N(epsilon)-histidyl)FMN
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 1'-(8alpha-FMN)-L-histidine
annotated property: has_exact_synonym
annotated target: 8alpha-(N1'-histidyl)FMN
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 1'-(8alpha-FMN)-L-histidine
annotated property: has_exact_synonym
annotated target: MOD_RES Tele-8alpha-FMN histidine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: 1'-(8alpha-FMN)-L-histidine
annotated property: has_exact_synonym
annotated target: N(tau)-(8alpha-FMN)-histidine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 1'-(8alpha-FMN)-L-histidine
annotated property: has_exact_synonym
annotated target: Ntele8aFMNHis
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: 1'-(8alpha-FMN)-L-histidine
annotated property: has_exact_synonym
annotated target: tele-(8alpha-FMN)-histidine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 1'-(8alpha-FMN)-L-histidine
annotated property: has_related_synonym
annotated target: FMNH
has_synonym_type: Agreed label from MS community

Axiom
annotated source: 1'-(8alpha-FMN)-L-histidine
annotated property: has_related_synonym
annotated target: flavin mononucleotide
has_synonym_type: Description (full_name) from Unimod

3'-(8alpha-FMN)-L-histidine
type: Class
subclass of: MOD_00909
subclass of: MOD_02085
definition: A protein modification that effectively converts an L-histidine residue to 3'-(8alpha-FMN)-L-histidine.
diff avg: 454.33
diff formula: C 17 H 19 N 4 O 9 P 1
diff mono: 454.08896
formula: C 23 H 26 N 7 O 10 P 1
mass avg: 591.47
mass mono: 591.1479
origin: H
source: hypothetical
database_cross_reference: Unimod:409
has_exact_synonym: (S)-2-amino-3-(3-[8alpha riboflavin 5'-dihydrogen phosphate]imidazol-4-yl)propanoic acid
has_exact_synonym: 3'-(8alpha-FMN)-L-histidine
has_exact_synonym: 8alpha-(N(delta)-histidyl)FMN
has_exact_synonym: 8alpha-(N3'-histidyl)FMN
has_exact_synonym: N(pi)-(8alpha-FMN)-histidine
has_exact_synonym: Npros8aFMNHis
has_exact_synonym: pros-(8alpha-FMN)-histidine
has_obo_namespace: PSI-MOD
has_related_synonym: FMNH
has_related_synonym: flavin mononucleotide
id: MOD:00358
in_subset: PSI-MOD-slim
comment: In a later publication, PubMed:19438211, the authors changed the enzyme activity, the connection from a histidine nitrogen to a cysteine sulfur, and the identity of the flavin from FMN to FAD. They now believe the modification is S-(8alpha-FAD)-L-cysteine, see MOD:00152. This is a deprecated entry in RESID. It probably does not occur naturally [JSG].

Axiom
annotated source: 3'-(8alpha-FMN)-L-histidine
annotated property: definition
annotated target: A protein modification that effectively converts an L-histidine residue to 3'-(8alpha-FMN)-L-histidine.
database_cross_reference: PubMed:12417325
database_cross_reference: RESID:AA0353
database_cross_reference: Unimod:409#H

Axiom
annotated source: 3'-(8alpha-FMN)-L-histidine
annotated property: has_exact_synonym
annotated target: (S)-2-amino-3-(3-[8alpha riboflavin 5'-dihydrogen phosphate]imidazol-4-yl)propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: 3'-(8alpha-FMN)-L-histidine
annotated property: has_exact_synonym
annotated target: 3'-(8alpha-FMN)-L-histidine
has_synonym_type: Name from RESID

Axiom
annotated source: 3'-(8alpha-FMN)-L-histidine
annotated property: has_exact_synonym
annotated target: 8alpha-(N(delta)-histidyl)FMN
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 3'-(8alpha-FMN)-L-histidine
annotated property: has_exact_synonym
annotated target: 8alpha-(N3'-histidyl)FMN
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 3'-(8alpha-FMN)-L-histidine
annotated property: has_exact_synonym
annotated target: N(pi)-(8alpha-FMN)-histidine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 3'-(8alpha-FMN)-L-histidine
annotated property: has_exact_synonym
annotated target: Npros8aFMNHis
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: 3'-(8alpha-FMN)-L-histidine
annotated property: has_exact_synonym
annotated target: pros-(8alpha-FMN)-histidine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 3'-(8alpha-FMN)-L-histidine
annotated property: has_related_synonym
annotated target: FMNH
has_synonym_type: Agreed label from MS community

Axiom
annotated source: 3'-(8alpha-FMN)-L-histidine
annotated property: has_related_synonym
annotated target: flavin mononucleotide
has_synonym_type: Description (full_name) from Unimod

N2-acetyl-L-arginine
type: Class
subclass of: MOD_00902
subclass of: MOD_01458
definition: A protein modification that effectively converts an L-arginine residue to N2-acetyl-L-arginine.
diff avg: 42.04
diff formula: C 2 H 2 N 0 O 1
diff mono: 42.010567
formula: C 8 H 15 N 4 O 2
mass avg: 199.23
mass mono: 199.1195
origin: R
source: natural
term spec: N-term
database_cross_reference: uniprot.ptm:PTM-0180
has_exact_synonym: (S)-2-acetamido-5-carbamimidamidopentanoic acid
has_exact_synonym: 2-acetamido-5-guanidinopentanoic acid
has_exact_synonym: 2-acetylamino-5-guanidinopentanoic acid
has_exact_synonym: AcArg
has_exact_synonym: MOD_RES N2-acetylarginine
has_exact_synonym: N(alpha)-acetylarginine
has_exact_synonym: N2-acetyl-L-arginine
has_exact_synonym: N2-acetylated L-arginine
has_exact_synonym: acetylarginine
has_exact_synonym: alpha-acetylamino-delta-guanidinovaleric acid
has_obo_namespace: PSI-MOD
id: MOD:00359

Axiom
annotated source: N2-acetyl-L-arginine
annotated property: definition
annotated target: A protein modification that effectively converts an L-arginine residue to N2-acetyl-L-arginine.
database_cross_reference: PubMed:12883043
database_cross_reference: PubMed:1894641
database_cross_reference: RESID:AA0354

Axiom
annotated source: N2-acetyl-L-arginine
annotated property: has_exact_synonym
annotated target: (S)-2-acetamido-5-carbamimidamidopentanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N2-acetyl-L-arginine
annotated property: has_exact_synonym
annotated target: 2-acetamido-5-guanidinopentanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N2-acetyl-L-arginine
annotated property: has_exact_synonym
annotated target: 2-acetylamino-5-guanidinopentanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N2-acetyl-L-arginine
annotated property: has_exact_synonym
annotated target: AcArg
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: N2-acetyl-L-arginine
annotated property: has_exact_synonym
annotated target: MOD_RES N2-acetylarginine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N2-acetyl-L-arginine
annotated property: has_exact_synonym
annotated target: N(alpha)-acetylarginine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N2-acetyl-L-arginine
annotated property: has_exact_synonym
annotated target: N2-acetyl-L-arginine
has_synonym_type: Name from RESID

Axiom
annotated source: N2-acetyl-L-arginine
annotated property: has_exact_synonym
annotated target: N2-acetylated L-arginine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: N2-acetyl-L-arginine
annotated property: has_exact_synonym
annotated target: acetylarginine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N2-acetyl-L-arginine
annotated property: has_exact_synonym
annotated target: alpha-acetylamino-delta-guanidinovaleric acid
has_synonym_type: Alternate name from RESID

L-cysteinyl copper sulfido molybdopterin cytosine dinuncleotide
type: Class
subclass of: MOD_00742
subclass of: MOD_00744
subclass of: MOD_00860
subclass of: MOD_02067
definition: A protein modification that effectively converts an L-cysteine residue to L-cysteinyl copper sulfido molybdopterin cytosine dinuncleotide.
diff avg: 922.07
diff formula: C 19 Cu 1 H 24 Mo 1 N 8 O 15 P 2 S 3
diff mono: 922.83484
formula: C 22 Cu 1 H 29 Mo 1 N 9 O 16 P 2 S 4
mass avg: 1025.2
mass mono: 1025.844
origin: C
source: natural
database_cross_reference: Unimod:444
has_exact_synonym: L-cysteinyl copper sulfido molybdopterin cytosine dinucleotide
has_exact_synonym: [8-amino-1a,2,4a,5,6,7,10-heptahydro-2-(trihydrogen diphosphate 5'-ester with cytosine)methyl-6-oxo-3,4-dimercapto-pteridino[6,7-5,6]pyranoato-S3,S4]-cysteinyl-S-copper-mu-sulfido-molybdenum hydroxide oxide
has_exact_synonym: cysteinyl copper mu-sulfido Mo-pterin cytosine dinucleotide
has_obo_namespace: PSI-MOD
has_related_synonym: CuSMo
has_related_synonym: copper sulfido molybdopterin cytosine dinuncleotide
id: MOD:00360

Axiom
annotated source: L-cysteinyl copper sulfido molybdopterin cytosine dinuncleotide
annotated property: definition
annotated target: A protein modification that effectively converts an L-cysteine residue to L-cysteinyl copper sulfido molybdopterin cytosine dinuncleotide.
database_cross_reference: PubMed:12475995
database_cross_reference: RESID:AA0355
database_cross_reference: Unimod:444#C

Axiom
annotated source: L-cysteinyl copper sulfido molybdopterin cytosine dinuncleotide
annotated property: has_exact_synonym
annotated target: L-cysteinyl copper sulfido molybdopterin cytosine dinucleotide
has_synonym_type: Name from RESID

Axiom
annotated source: L-cysteinyl copper sulfido molybdopterin cytosine dinuncleotide
annotated property: has_exact_synonym
annotated target: [8-amino-1a,2,4a,5,6,7,10-heptahydro-2-(trihydrogen diphosphate 5'-ester with cytosine)methyl-6-oxo-3,4-dimercapto-pteridino[6,7-5,6]pyranoato-S3,S4]-cysteinyl-S-copper-mu-sulfido-molybdenum hydroxide oxide
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-cysteinyl copper sulfido molybdopterin cytosine dinuncleotide
annotated property: has_exact_synonym
annotated target: cysteinyl copper mu-sulfido Mo-pterin cytosine dinucleotide
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteinyl copper sulfido molybdopterin cytosine dinuncleotide
annotated property: has_related_synonym
annotated target: CuSMo
has_synonym_type: Agreed label from MS community

Axiom
annotated source: L-cysteinyl copper sulfido molybdopterin cytosine dinuncleotide
annotated property: has_related_synonym
annotated target: copper sulfido molybdopterin cytosine dinuncleotide
has_synonym_type: Description (full_name) from Unimod

tris-L-cysteinyl S-adenosylmethion-N,O-diyl tetrairon tetrasulfide
type: Class
subclass of: MOD_00739
subclass of: MOD_02067
definition: A protein modification that effectively converts three L-cysteine residues, an S-adenosylmethionine and a four-iron four-sulfur cluster to tris-L-cysteinyl S-adenosylmethion-N,O-diyl tetrairon tetrasulfide.
diff avg: 747.03
diff formula: C 15 Fe 4 H 19 N 6 O 5 S 5
diff mono: 746.7424
formal charge: 1-
formula: C 24 Fe 4 H 34 N 9 O 8 S 8
mass avg: 1056.45
mass mono: 1055.7699
origin: C, C, C
source: natural
has_exact_synonym: METAL Iron-sulfur (4Fe-4S-S-AdoMet)
has_exact_synonym: tetra-mu3-sulfido(S-adenosylmethion-N,O-diyliron)tris(S-cysteinyliron)
has_exact_synonym: tris-L-cysteinyl S-adenosylmethion-N,O-diyl tetrairon tetrasulfide
has_obo_namespace: PSI-MOD
id: MOD:00361
comment: Cross-link 3.

Axiom
annotated source: tris-L-cysteinyl S-adenosylmethion-N,O-diyl tetrairon tetrasulfide
annotated property: definition
annotated target: A protein modification that effectively converts three L-cysteine residues, an S-adenosylmethionine and a four-iron four-sulfur cluster to tris-L-cysteinyl S-adenosylmethion-N,O-diyl tetrairon tetrasulfide.
database_cross_reference: PubMed:11222759
database_cross_reference: PubMed:14704425
database_cross_reference: RESID:AA0356

Axiom
annotated source: tris-L-cysteinyl S-adenosylmethion-N,O-diyl tetrairon tetrasulfide
annotated property: has_exact_synonym
annotated target: METAL Iron-sulfur (4Fe-4S-S-AdoMet)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: tris-L-cysteinyl S-adenosylmethion-N,O-diyl tetrairon tetrasulfide
annotated property: has_exact_synonym
annotated target: tetra-mu3-sulfido(S-adenosylmethion-N,O-diyliron)tris(S-cysteinyliron)
has_synonym_type: Systematic name from RESID

Axiom
annotated source: tris-L-cysteinyl S-adenosylmethion-N,O-diyl tetrairon tetrasulfide
annotated property: has_exact_synonym
annotated target: tris-L-cysteinyl S-adenosylmethion-N,O-diyl tetrairon tetrasulfide
has_synonym_type: Name from RESID

tris-L-cysteinyl L-arginyl diiron disulfide
type: Class
subclass of: MOD_00739
subclass of: MOD_02067
subclass of: MOD_02076
definition: A protein modification that effectively converts three L-cysteine residues, an L-arginine residue and a two-iron two-sulfur cluster to tris-L-cysteinyl L-arginyl diiron disulfide.
diff avg: 172.79
diff formula: C 0 Fe 2 H -3 N 0 O 0 S 2
diff mono: 172.79164
formal charge: 2-
formula: C 15 Fe 2 H 24 N 7 O 4 S 5
mass avg: 638.39
mass mono: 637.9203
origin: C, C, C, R
source: natural
has_exact_synonym: METAL Iron-sulfur (2Fe-2S)
has_exact_synonym: di-mu-sulfido(N(eta1)-arginyl-S-cysteinyliron)(bis-S-cysteinyliron)
has_exact_synonym: tris-L-cysteinyl L-arginyl diiron disulfide
has_obo_namespace: PSI-MOD
id: MOD:00362
comment: Cross-link 4.

Axiom
annotated source: tris-L-cysteinyl L-arginyl diiron disulfide
annotated property: definition
annotated target: A protein modification that effectively converts three L-cysteine residues, an L-arginine residue and a two-iron two-sulfur cluster to tris-L-cysteinyl L-arginyl diiron disulfide.
database_cross_reference: PubMed:14704425
database_cross_reference: RESID:AA0357

Axiom
annotated source: tris-L-cysteinyl L-arginyl diiron disulfide
annotated property: has_exact_synonym
annotated target: METAL Iron-sulfur (2Fe-2S)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: tris-L-cysteinyl L-arginyl diiron disulfide
annotated property: has_exact_synonym
annotated target: di-mu-sulfido(N(eta1)-arginyl-S-cysteinyliron)(bis-S-cysteinyliron)
has_synonym_type: Systematic name from RESID

Axiom
annotated source: tris-L-cysteinyl L-arginyl diiron disulfide
annotated property: has_exact_synonym
annotated target: tris-L-cysteinyl L-arginyl diiron disulfide
has_synonym_type: Name from RESID

L-cysteinyl-L-selenocysteine (Cys-Sec)
type: Class
subclass of: MOD_01627
subclass of: MOD_02061
definition: A protein modification that effectively cross-links an L-cysteine residue and an L-selenocysteine residues to form L-cysteinyl-L-selenocystine.
diff avg: -2.02
diff formula: C 0 H -2 N 0 O 0 S 0 Se 0
diff mono: -2.01565
formula: C 6 H 8 N 2 O 2 S 1 Se 1
mass avg: 251.17
mass mono: 251.94717
origin: C, U
source: natural
database_cross_reference: uniprot.ptm:PTM-0109
has_exact_synonym: (R,R)-2-amino-3-[3-(2-aminopropanoic acid)sulfanyl]selanylpropanoic acid
has_exact_synonym: CROSSLNK Cysteinyl-selenocysteine (Cys-Sec)
has_exact_synonym: CROSSLNK Cysteinyl-selenocysteine (Sec-Cys)
has_exact_synonym: L-cysteinyl-L-selenocysteine
has_obo_namespace: PSI-MOD
id: MOD:00363
in_subset: PSI-MOD-slim
comment: Cross-link 2.

Axiom
annotated source: L-cysteinyl-L-selenocysteine (Cys-Sec)
annotated property: definition
annotated target: A protein modification that effectively cross-links an L-cysteine residue and an L-selenocysteine residues to form L-cysteinyl-L-selenocystine.
database_cross_reference: PubMed:12911312
database_cross_reference: RESID:AA0358#SEC

Axiom
annotated source: L-cysteinyl-L-selenocysteine (Cys-Sec)
annotated property: has_exact_synonym
annotated target: (R,R)-2-amino-3-[3-(2-aminopropanoic acid)sulfanyl]selanylpropanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-cysteinyl-L-selenocysteine (Cys-Sec)
annotated property: has_exact_synonym
annotated target: CROSSLNK Cysteinyl-selenocysteine (Cys-Sec)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-cysteinyl-L-selenocysteine (Cys-Sec)
annotated property: has_exact_synonym
annotated target: CROSSLNK Cysteinyl-selenocysteine (Sec-Cys)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-cysteinyl-L-selenocysteine (Cys-Sec)
annotated property: has_exact_synonym
annotated target: L-cysteinyl-L-selenocysteine
has_synonym_type: Name from RESID

5-hydroxy-N6,N6,N6-trimethyl-L-lysine
type: Class
subclass of: N-methylated residue
subclass of: MOD_00912
subclass of: Restriction
  on property: has functional parent
  some values from: 5-hydroxy-L-lysine
subclass of: Restriction
  on property: has functional parent
  some values from: N6,N6,N6-trimethyl-L-lysine
definition: A protein modification that effectively converts an L-lysine residue to 5-hydroxy-N6,N6,N6-trimethyl-L-lysine.
diff avg: 59.09
diff formula: C 3 H 7 N 0 O 1
diff mono: 59.04914
formal charge: 1+
formula: C 9 H 19 N 2 O 2
mass avg: 187.26
mass mono: 187.1441
origin: K
source: natural
database_cross_reference: Unimod:445
database_cross_reference: uniprot.ptm:PTM-0186
has_exact_synonym: (2R,5Xi)-5-amino-5-carboxy-2-hydroxy-N,N,N-trimethylpentan-1-aminium
has_exact_synonym: (2Xi,5S)-5-amino-5-carboxy-2-hydroxy-N,N,N-trimethylpentanaminium
has_exact_synonym: (2Xi,5S)-5-azanyl-5-carboxy-2-hydroxy-N,N,N-trimethylpentanazanium
has_exact_synonym: 5-hydroxy-N(zeta)-trimethyllysine
has_exact_synonym: 5-hydroxy-N6,N6,N6-trimethyl-L-lysine
has_exact_synonym: 5-hydroxy-N6,N6,N6-trimethyllysin-N6-ium
has_exact_synonym: 5-hydroxy-N6,N6,N6-trimethyllysine cation
has_exact_synonym: 5-hydroxylated N6,N6,N6-trimethylated L-lysine
has_exact_synonym: 5HyN6Me3Lys
has_exact_synonym: MOD_RES N6,N6,N6-trimethyl-5-hydroxylysine
has_exact_synonym: alpha-amino-epsilon-dimethylamino-delta-hydroxycaproic acid
has_exact_synonym: delta-hydroxy-epsilon-N,N,N-trimethyllysine
has_exact_synonym: lysine derivative Lys(z)
has_obo_namespace: PSI-MOD
has_related_synonym: 5-hydroxy-N6,N6,N6-trimethyl
has_related_synonym: Hydroxytrimethyl
id: MOD:00364
comment: Incidental to RESID:AA0278; secondary to RESID:AA0028; secondary to RESID:AA0074.

Axiom
annotated source: 5-hydroxy-N6,N6,N6-trimethyl-L-lysine
annotated property: definition
annotated target: A protein modification that effectively converts an L-lysine residue to 5-hydroxy-N6,N6,N6-trimethyl-L-lysine.
database_cross_reference: PubMed:11349130
database_cross_reference: PubMed:14661085
database_cross_reference: RESID:AA0359
database_cross_reference: Unimod:445#K

Axiom
annotated source: 5-hydroxy-N6,N6,N6-trimethyl-L-lysine
annotated property: has_exact_synonym
annotated target: (2R,5Xi)-5-amino-5-carboxy-2-hydroxy-N,N,N-trimethylpentan-1-aminium
has_synonym_type: Systematic name from RESID

Axiom
annotated source: 5-hydroxy-N6,N6,N6-trimethyl-L-lysine
annotated property: has_exact_synonym
annotated target: (2Xi,5S)-5-amino-5-carboxy-2-hydroxy-N,N,N-trimethylpentanaminium
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 5-hydroxy-N6,N6,N6-trimethyl-L-lysine
annotated property: has_exact_synonym
annotated target: (2Xi,5S)-5-azanyl-5-carboxy-2-hydroxy-N,N,N-trimethylpentanazanium
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 5-hydroxy-N6,N6,N6-trimethyl-L-lysine
annotated property: has_exact_synonym
annotated target: 5-hydroxy-N(zeta)-trimethyllysine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 5-hydroxy-N6,N6,N6-trimethyl-L-lysine
annotated property: has_exact_synonym
annotated target: 5-hydroxy-N6,N6,N6-trimethyl-L-lysine
has_synonym_type: Name from RESID

Axiom
annotated source: 5-hydroxy-N6,N6,N6-trimethyl-L-lysine
annotated property: has_exact_synonym
annotated target: 5-hydroxy-N6,N6,N6-trimethyllysin-N6-ium
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 5-hydroxy-N6,N6,N6-trimethyl-L-lysine
annotated property: has_exact_synonym
annotated target: 5-hydroxy-N6,N6,N6-trimethyllysine cation
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 5-hydroxy-N6,N6,N6-trimethyl-L-lysine
annotated property: has_exact_synonym
annotated target: 5-hydroxylated N6,N6,N6-trimethylated L-lysine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: 5-hydroxy-N6,N6,N6-trimethyl-L-lysine
annotated property: has_exact_synonym
annotated target: 5HyN6Me3Lys
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: 5-hydroxy-N6,N6,N6-trimethyl-L-lysine
annotated property: has_exact_synonym
annotated target: MOD_RES N6,N6,N6-trimethyl-5-hydroxylysine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: 5-hydroxy-N6,N6,N6-trimethyl-L-lysine
annotated property: has_exact_synonym
annotated target: alpha-amino-epsilon-dimethylamino-delta-hydroxycaproic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 5-hydroxy-N6,N6,N6-trimethyl-L-lysine
annotated property: has_exact_synonym
annotated target: delta-hydroxy-epsilon-N,N,N-trimethyllysine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 5-hydroxy-N6,N6,N6-trimethyl-L-lysine
annotated property: has_exact_synonym
annotated target: lysine derivative Lys(z)
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 5-hydroxy-N6,N6,N6-trimethyl-L-lysine
annotated property: has_related_synonym
annotated target: 5-hydroxy-N6,N6,N6-trimethyl
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: 5-hydroxy-N6,N6,N6-trimethyl-L-lysine
annotated property: has_related_synonym
annotated target: Hydroxytrimethyl
has_synonym_type: Agreed label from MS community

N-(L-isoglutamyl)-glycine
type: Class
subclass of: MOD_00688
subclass of: MOD_00954
subclass of: MOD_02045
subclass of: MOD_02047
definition: A protein modification that effectively crosslinks an L-glutamic acid residue and a glycine residue by an isopeptide bond to form N-(L-isoglutamyl)-glycine.
diff avg: -18.02
diff formula: C 0 H -2 N 0 O -1
diff mono: -18.010565
formula: C 7 H 9 N 2 O 3
mass avg: 169.16
mass mono: 169.06131
origin: E, G
source: natural
term spec: N-term
database_cross_reference: uniprot.ptm:PTM-0157
has_exact_synonym: (S)-2-amino-5-(carboxymethyl)amino-5-oxopentanoic acid
has_exact_synonym: 2-amino-N5-(carboxymethyl)-pentanediamic acid
has_exact_synonym: CROSSLNK Isoglutamyl glycine isopeptide (Gly-Glu)
has_exact_synonym: N-(L-isoglutamyl)-glycine
has_exact_synonym: N-gamma-glutamylglycine
has_exact_synonym: isoglutamyl glycine
has_obo_namespace: PSI-MOD
id: MOD:00365
comment: Cross-link 2.

Axiom
annotated source: N-(L-isoglutamyl)-glycine
annotated property: definition
annotated target: A protein modification that effectively crosslinks an L-glutamic acid residue and a glycine residue by an isopeptide bond to form N-(L-isoglutamyl)-glycine.
database_cross_reference: PubMed:14531691
database_cross_reference: RESID:AA0360

Axiom
annotated source: N-(L-isoglutamyl)-glycine
annotated property: has_exact_synonym
annotated target: (S)-2-amino-5-(carboxymethyl)amino-5-oxopentanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N-(L-isoglutamyl)-glycine
annotated property: has_exact_synonym
annotated target: 2-amino-N5-(carboxymethyl)-pentanediamic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-(L-isoglutamyl)-glycine
annotated property: has_exact_synonym
annotated target: CROSSLNK Isoglutamyl glycine isopeptide (Gly-Glu)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N-(L-isoglutamyl)-glycine
annotated property: has_exact_synonym
annotated target: N-(L-isoglutamyl)-glycine
has_synonym_type: Name from RESID

Axiom
annotated source: N-(L-isoglutamyl)-glycine
annotated property: has_exact_synonym
annotated target: N-gamma-glutamylglycine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-(L-isoglutamyl)-glycine
annotated property: has_exact_synonym
annotated target: isoglutamyl glycine
has_synonym_type: Alternate name from RESID

O-sulfo-L-serine
type: Class
subclass of: MOD_00695
subclass of: MOD_00771
subclass of: MOD_00916
definition: A protein modification that effectively converts an L-serine residue to O-sulfo-L-serine.
diff avg: 80.06
diff formula: C 0 H 0 N 0 O 3 S 1
diff mono: 79.95682
formula: C 3 H 5 N 1 O 5 S 1
mass avg: 167.13
mass mono: 166.98885
origin: S
source: natural
database_cross_reference: Unimod:40
database_cross_reference: uniprot.ptm:PTM-0284
has_exact_synonym: (2S)-2-amino-3-(sulfooxy)propanoic acid
has_exact_synonym: 2-amino-3-hydroxypropanoic acid 3-sulfate
has_exact_synonym: MOD_RES Sulfoserine
has_exact_synonym: O-sulfo-L-serine
has_exact_synonym: O3-sulfonoserine
has_exact_synonym: O3-sulfoserine
has_exact_synonym: serine sulfate ester
has_obo_namespace: PSI-MOD
has_related_synonym: O-Sulfonation
has_related_synonym: Sulfo
id: MOD:00366
in_subset: PSI-MOD-slim

Axiom
annotated source: O-sulfo-L-serine
annotated property: definition
annotated target: A protein modification that effectively converts an L-serine residue to O-sulfo-L-serine.
database_cross_reference: PubMed:14752058
database_cross_reference: RESID:AA0361
database_cross_reference: Unimod:40#S

Axiom
annotated source: O-sulfo-L-serine
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-3-(sulfooxy)propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: O-sulfo-L-serine
annotated property: has_exact_synonym
annotated target: 2-amino-3-hydroxypropanoic acid 3-sulfate
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-sulfo-L-serine
annotated property: has_exact_synonym
annotated target: MOD_RES Sulfoserine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: O-sulfo-L-serine
annotated property: has_exact_synonym
annotated target: O-sulfo-L-serine
has_synonym_type: Name from RESID

Axiom
annotated source: O-sulfo-L-serine
annotated property: has_exact_synonym
annotated target: O3-sulfonoserine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-sulfo-L-serine
annotated property: has_exact_synonym
annotated target: O3-sulfoserine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-sulfo-L-serine
annotated property: has_exact_synonym
annotated target: serine sulfate ester
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-sulfo-L-serine
annotated property: has_related_synonym
annotated target: O-Sulfonation
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: O-sulfo-L-serine
annotated property: has_related_synonym
annotated target: Sulfo
has_synonym_type: Agreed label from MS community

O-sulfo-L-threonine
type: Class
subclass of: MOD_00695
subclass of: MOD_00773
subclass of: MOD_00917
definition: A protein modification that effectively converts an L-threonine residue to O-sulfo-L-threonine.
diff avg: 80.06
diff formula: C 0 H 0 N 0 O 3 S 1
diff mono: 79.95682
formula: C 4 H 7 N 1 O 5 S 1
mass avg: 181.16
mass mono: 181.00449
origin: T
source: natural
database_cross_reference: Unimod:40
database_cross_reference: uniprot.ptm:PTM-0285
has_exact_synonym: (2S,3R)-2-amino-3-(sulfooxy)butanoic acid
has_exact_synonym: 2-amino-3-hydroxybutanoic acid 3-sulfate
has_exact_synonym: MOD_RES Sulfothreonine
has_exact_synonym: O-sulfo-L-threonine
has_exact_synonym: O3-sulfonothreonine
has_exact_synonym: O3-sulfothreonine
has_exact_synonym: threonine sulfate ester
has_obo_namespace: PSI-MOD
has_related_synonym: O-Sulfonation
has_related_synonym: Sulfo
id: MOD:00367
in_subset: PSI-MOD-slim

Axiom
annotated source: O-sulfo-L-threonine
annotated property: definition
annotated target: A protein modification that effectively converts an L-threonine residue to O-sulfo-L-threonine.
database_cross_reference: PubMed:14752058
database_cross_reference: RESID:AA0362
database_cross_reference: Unimod:40#T

Axiom
annotated source: O-sulfo-L-threonine
annotated property: has_exact_synonym
annotated target: (2S,3R)-2-amino-3-(sulfooxy)butanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: O-sulfo-L-threonine
annotated property: has_exact_synonym
annotated target: 2-amino-3-hydroxybutanoic acid 3-sulfate
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-sulfo-L-threonine
annotated property: has_exact_synonym
annotated target: MOD_RES Sulfothreonine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: O-sulfo-L-threonine
annotated property: has_exact_synonym
annotated target: O-sulfo-L-threonine
has_synonym_type: Name from RESID

Axiom
annotated source: O-sulfo-L-threonine
annotated property: has_exact_synonym
annotated target: O3-sulfonothreonine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-sulfo-L-threonine
annotated property: has_exact_synonym
annotated target: O3-sulfothreonine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-sulfo-L-threonine
annotated property: has_exact_synonym
annotated target: threonine sulfate ester
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-sulfo-L-threonine
annotated property: has_related_synonym
annotated target: O-Sulfonation
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: O-sulfo-L-threonine
annotated property: has_related_synonym
annotated target: Sulfo
has_synonym_type: Agreed label from MS community

N-carboxy-L-methionine
type: Class
subclass of: MOD_00913
subclass of: MOD_01152
definition: A protein modification that effectively converts an L-methionine residue to N-carboxy-L-methionine.
diff avg: 44.01
diff formula: C 1 H 0 N 0 O 2 S 0
diff mono: 43.98983
formula: C 6 H 10 N 1 O 3 S 1
mass avg: 176.21
mass mono: 176.03813
origin: M
source: hypothetical
term spec: N-term
database_cross_reference: Unimod:299
has_exact_synonym: (S)-2-carboxyamino-4-(methylsulfanyl)butanoic acid
has_exact_synonym: 2-carbamic-4-(methylsulfanyl)butanoic acid
has_exact_synonym: 2-carbamic-4-(methylthio)butanoic acid
has_exact_synonym: N-carboxy-L-methionine
has_exact_synonym: N-carboxymethionine
has_obo_namespace: PSI-MOD
has_related_synonym: Carboxy
has_related_synonym: Carboxylation
id: MOD:00368
comment: At least three protein crystallographic structures have been reported with this modification. However, no chemical evidence for this modification is provided, there were no reports of this modification before these crystallographic reports, and there is no metabolic explanation for the conversion of a formyl group to a carboxy group. There is confusion in its description, and misnaming is common. This modification is probably a misidentification of N-(dihydroxymethyl)methionine, the hydrated form of N-formylmethionine. See MOD:01446 [JSG].

Axiom
annotated source: N-carboxy-L-methionine
annotated property: definition
annotated target: A protein modification that effectively converts an L-methionine residue to N-carboxy-L-methionine.
database_cross_reference: PubMed:10368287
database_cross_reference: PubMed:11120890
database_cross_reference: PubMed:12595263
database_cross_reference: PubMed:8312270
database_cross_reference: RESID:AA0363
database_cross_reference: Unimod:299#M

Axiom
annotated source: N-carboxy-L-methionine
annotated property: has_exact_synonym
annotated target: (S)-2-carboxyamino-4-(methylsulfanyl)butanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N-carboxy-L-methionine
annotated property: has_exact_synonym
annotated target: 2-carbamic-4-(methylsulfanyl)butanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-carboxy-L-methionine
annotated property: has_exact_synonym
annotated target: 2-carbamic-4-(methylthio)butanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-carboxy-L-methionine
annotated property: has_exact_synonym
annotated target: N-carboxy-L-methionine
has_synonym_type: Name from RESID

Axiom
annotated source: N-carboxy-L-methionine
annotated property: has_exact_synonym
annotated target: N-carboxymethionine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-carboxy-L-methionine
annotated property: has_related_synonym
annotated target: Carboxy
has_synonym_type: Interim label from Unimod

Axiom
annotated source: N-carboxy-L-methionine
annotated property: has_related_synonym
annotated target: Carboxylation
has_synonym_type: Description (full_name) from Unimod

O-acetyl-L-serine
type: Class
subclass of: mono O-acetylated residue
subclass of: monoacetylated L-serine
subclass of: MOD_02003
definition: A protein modification that effectively converts an L-serine residue to O-acetyl-L-serine.
diff avg: 42.04
diff formula: C 2 H 2 N 0 O 1
diff mono: 42.010567
formula: C 5 H 7 N 1 O 3
mass avg: 129.12
mass mono: 129.04259
origin: S
source: natural
database_cross_reference: Unimod:1
database_cross_reference: uniprot.ptm:PTM-0232
has_exact_synonym: (2S)-3-(acetyloxy)-2-aminopropanoic acid
has_exact_synonym: MOD_RES O-acetylserine
has_exact_synonym: O-acetyl-L-serine
has_exact_synonym: O-acetylated L-serine
has_exact_synonym: O-acetylserine
has_exact_synonym: OAcSer
has_exact_synonym: serine acetate ester
has_obo_namespace: PSI-MOD
has_related_synonym: Acetyl
has_related_synonym: Acetylation
id: MOD:00369
in_subset: PSI-MOD-slim
comment: incidental to RESID:AA0051

Axiom
annotated source: O-acetyl-L-serine
annotated property: definition
annotated target: A protein modification that effectively converts an L-serine residue to O-acetyl-L-serine.
database_cross_reference: ChEBI:17981
database_cross_reference: PubMed:11857757
database_cross_reference: PubMed:11999733
database_cross_reference: PubMed:12175151
database_cross_reference: PubMed:14730666
database_cross_reference: PubMed:15350136
database_cross_reference: PubMed:16731519
database_cross_reference: PubMed:489587
database_cross_reference: PubMed:7309355
database_cross_reference: RESID:AA0364
database_cross_reference: Unimod:1#S

Axiom
annotated source: O-acetyl-L-serine
annotated property: has_exact_synonym
annotated target: (2S)-3-(acetyloxy)-2-aminopropanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: O-acetyl-L-serine
annotated property: has_exact_synonym
annotated target: MOD_RES O-acetylserine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: O-acetyl-L-serine
annotated property: has_exact_synonym
annotated target: O-acetyl-L-serine
has_synonym_type: Name from RESID

Axiom
annotated source: O-acetyl-L-serine
annotated property: has_exact_synonym
annotated target: O-acetylated L-serine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: O-acetyl-L-serine
annotated property: has_exact_synonym
annotated target: O-acetylserine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-acetyl-L-serine
annotated property: has_exact_synonym
annotated target: OAcSer
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: O-acetyl-L-serine
annotated property: has_exact_synonym
annotated target: serine acetate ester
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-acetyl-L-serine
annotated property: has_related_synonym
annotated target: Acetyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: O-acetyl-L-serine
annotated property: has_related_synonym
annotated target: Acetylation
has_synonym_type: Description (full_name) from Unimod

(E)-2,3-didehydrotyrosine
type: Class
subclass of: MOD_00706
definition: A protein modification that effectively converts an L-tyrosine residue to (E)-2,3-didehydrotyrosine.
diff avg: -2.02
diff formula: C 0 H -2 N 0 O 0
diff mono: -2.01565
formula: C 9 H 7 N 1 O 2
mass avg: 161.16
mass mono: 161.04768
origin: Y
source: natural
database_cross_reference: uniprot.ptm:PTM-0001
has_exact_synonym: (2E)-2-amino-3-(4-hydroxyphenyl)prop-2-enoic acid
has_exact_synonym: (E)-2,3-didehydrogenated tyrosine
has_exact_synonym: (E)-2,3-didehydrotyrosine
has_exact_synonym: E-dHTyr
has_exact_synonym: MOD_RES (E)-2,3-didehydrotyrosine
has_exact_synonym: amino-(para-hydroxybenzylidenyl)acetic acid
has_exact_synonym: blue non-fluorescent pocilloporin chromophore
has_exact_synonym: para-hydroxybenzylidene-imidazolidinone chromophore
has_exact_synonym: trans-dehydrotyrosine
has_obo_namespace: PSI-MOD
has_related_synonym: 2-amino-3-oxo-butanoic_acid
has_related_synonym: Didehydro
id: MOD:00370
in_subset: PSI-MOD-slim
comment: incidental to RESID:AA0184; incidental to RESID:AA0187; incidental to RESID:AA0188; incidental to RESID:AA0189; incidental to RESID:AA0378; incidental to RESID:AA0379; incidental to RESID:AA0380; incidental to RESID:AA0381

Axiom
annotated source: (E)-2,3-didehydrotyrosine
annotated property: definition
annotated target: A protein modification that effectively converts an L-tyrosine residue to (E)-2,3-didehydrotyrosine.
database_cross_reference: PubMed:12623015
database_cross_reference: RESID:AA0365

Axiom
annotated source: (E)-2,3-didehydrotyrosine
annotated property: has_exact_synonym
annotated target: (2E)-2-amino-3-(4-hydroxyphenyl)prop-2-enoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: (E)-2,3-didehydrotyrosine
annotated property: has_exact_synonym
annotated target: (E)-2,3-didehydrogenated tyrosine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: (E)-2,3-didehydrotyrosine
annotated property: has_exact_synonym
annotated target: (E)-2,3-didehydrotyrosine
has_synonym_type: Name from RESID

Axiom
annotated source: (E)-2,3-didehydrotyrosine
annotated property: has_exact_synonym
annotated target: E-dHTyr
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: (E)-2,3-didehydrotyrosine
annotated property: has_exact_synonym
annotated target: MOD_RES (E)-2,3-didehydrotyrosine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: (E)-2,3-didehydrotyrosine
annotated property: has_exact_synonym
annotated target: amino-(para-hydroxybenzylidenyl)acetic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: (E)-2,3-didehydrotyrosine
annotated property: has_exact_synonym
annotated target: blue non-fluorescent pocilloporin chromophore
has_synonym_type: Alternate name from RESID

Axiom
annotated source: (E)-2,3-didehydrotyrosine
annotated property: has_exact_synonym
annotated target: para-hydroxybenzylidene-imidazolidinone chromophore
has_synonym_type: Alternate name from RESID

Axiom
annotated source: (E)-2,3-didehydrotyrosine
annotated property: has_exact_synonym
annotated target: trans-dehydrotyrosine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: (E)-2,3-didehydrotyrosine
annotated property: has_related_synonym
annotated target: 2-amino-3-oxo-butanoic_acid
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: (E)-2,3-didehydrotyrosine
annotated property: has_related_synonym
annotated target: Didehydro
has_synonym_type: Agreed label from MS community

bis-L-aspartato tris-L-glutamato L-histidino calcium tetramanganese tetroxide
type: Class
subclass of: MOD_00740
subclass of: MOD_01482
subclass of: MOD_02066
subclass of: MOD_02068
subclass of: MOD_02070
definition: A protein modification that effectively converts two L-aspartic acid residues, three L-glutamic acid residues, an L-histidine residue, and a one-calcium, four-iron, four-oxygen cluster to bis-L-aspartato tris-L-glutamato L-histidino calcium tetramanganese tetroxide.
diff avg: 317.78
diff formula: C 0 Ca 1 H -6 Mn 4 N 0 O 4
diff mono: 317.6475
formula: C 29 Ca 1 H 32 Mn 4 N 8 O 20
mass avg: 1072.44
mass mono: 1071.8881
origin: D, D, E, E, E, H
source: hypothetical
has_exact_synonym: 4Mn-Ca-4O cluster
has_exact_synonym: bis-L-aspartato tris-L-glutamato L-histidino calcium tetramanganese tetroxide
has_exact_synonym: mu3-1:2:3kappaO-oxido-mu3-1:3:4kappaO-oxido-mu3-2:3:4kappaO-oxido-mu4-1:2:4:5kappaO-oxido-N1'-histidino-O5-glutamato 2-manganese-O5,O5-glutamato 3-manganese-O4-aspartato 4-manganese-O4-aspartato-O5-glutamato 5-manganese
has_exact_synonym: photosystem II catalytic cluster
has_obo_namespace: PSI-MOD
id: MOD:00371
comment: Cross-link 6.

Axiom
annotated source: bis-L-aspartato tris-L-glutamato L-histidino calcium tetramanganese tetroxide
annotated property: definition
annotated target: A protein modification that effectively converts two L-aspartic acid residues, three L-glutamic acid residues, an L-histidine residue, and a one-calcium, four-iron, four-oxygen cluster to bis-L-aspartato tris-L-glutamato L-histidino calcium tetramanganese tetroxide.
database_cross_reference: PubMed:14764885
database_cross_reference: RESID:AA0366

Axiom
annotated source: bis-L-aspartato tris-L-glutamato L-histidino calcium tetramanganese tetroxide
annotated property: has_exact_synonym
annotated target: 4Mn-Ca-4O cluster
has_synonym_type: Alternate name from RESID

Axiom
annotated source: bis-L-aspartato tris-L-glutamato L-histidino calcium tetramanganese tetroxide
annotated property: has_exact_synonym
annotated target: bis-L-aspartato tris-L-glutamato L-histidino calcium tetramanganese tetroxide
has_synonym_type: Name from RESID

Axiom
annotated source: bis-L-aspartato tris-L-glutamato L-histidino calcium tetramanganese tetroxide
annotated property: has_exact_synonym
annotated target: mu3-1:2:3kappaO-oxido-mu3-1:3:4kappaO-oxido-mu3-2:3:4kappaO-oxido-mu4-1:2:4:5kappaO-oxido-N1'-histidino-O5-glutamato 2-manganese-O5,O5-glutamato 3-manganese-O4-aspartato 4-manganese-O4-aspartato-O5-glutamato 5-manganese
has_synonym_type: Systematic name from RESID

Axiom
annotated source: bis-L-aspartato tris-L-glutamato L-histidino calcium tetramanganese tetroxide
annotated property: has_exact_synonym
annotated target: photosystem II catalytic cluster
has_synonym_type: Alternate name from RESID

3'-(3'-L-tyrosinyl)-L-tyrosine
type: Class
subclass of: MOD_00692
subclass of: MOD_02058
definition: A protein modification that effectively cross-links two L-tyrosine residues with a carbon-carbon bond to form 3'-(3'-L-tyrosinyl)-L-tyrosine.
diff avg: -2.02
diff formula: C 0 H -2 N 0 O 0
diff mono: -2.01565
formula: C 18 H 16 N 2 O 4
mass avg: 324.34
mass mono: 324.111
origin: Y, Y
source: natural
has_exact_synonym: (2S,2'S)-3,3'-(6,6'-dihydroxybiphenyl-3,3'-diyl)bis(2-aminopropanoic acid)
has_exact_synonym: 3'-(L-tyros-3'-yl)-L-tyrosine
has_exact_synonym: 3,3'-BiTyr (Crosslink)
has_exact_synonym: 6,6'-dihydroxy-(1,1'-biphenyl)-3,3'-bis(2-aminopropanoic acid)
has_exact_synonym: alpha,alpha'-diamino-6,6'-dihydroxy-(1,1'-biphenyl)-3,3'-dipropanoic acid
has_exact_synonym: bityrosine
has_exact_synonym: o,o-dityrosine
has_obo_namespace: PSI-MOD
id: MOD:00372
comment: Cross-link 2; From DeltaMass: Average Mass: -2.

Axiom
annotated source: 3'-(3'-L-tyrosinyl)-L-tyrosine
annotated property: definition
annotated target: A protein modification that effectively cross-links two L-tyrosine residues with a carbon-carbon bond to form 3'-(3'-L-tyrosinyl)-L-tyrosine.
database_cross_reference: DeltaMass:0
database_cross_reference: PubMed:14249161
database_cross_reference: PubMed:637884
database_cross_reference: PubMed:8702710
database_cross_reference: PubMed:8937563
database_cross_reference: RESID:AA0367

Axiom
annotated source: 3'-(3'-L-tyrosinyl)-L-tyrosine
annotated property: has_exact_synonym
annotated target: (2S,2'S)-3,3'-(6,6'-dihydroxybiphenyl-3,3'-diyl)bis(2-aminopropanoic acid)
has_synonym_type: Systematic name from RESID

Axiom
annotated source: 3'-(3'-L-tyrosinyl)-L-tyrosine
annotated property: has_exact_synonym
annotated target: 3'-(L-tyros-3'-yl)-L-tyrosine
has_synonym_type: Name from RESID

Axiom
annotated source: 3'-(3'-L-tyrosinyl)-L-tyrosine
annotated property: has_exact_synonym
annotated target: 3,3'-BiTyr (Crosslink)
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: 3'-(3'-L-tyrosinyl)-L-tyrosine
annotated property: has_exact_synonym
annotated target: 6,6'-dihydroxy-(1,1'-biphenyl)-3,3'-bis(2-aminopropanoic acid)
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 3'-(3'-L-tyrosinyl)-L-tyrosine
annotated property: has_exact_synonym
annotated target: alpha,alpha'-diamino-6,6'-dihydroxy-(1,1'-biphenyl)-3,3'-dipropanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 3'-(3'-L-tyrosinyl)-L-tyrosine
annotated property: has_exact_synonym
annotated target: bityrosine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 3'-(3'-L-tyrosinyl)-L-tyrosine
annotated property: has_exact_synonym
annotated target: o,o-dityrosine
has_synonym_type: Alternate name from RESID

3'-(O4'-L-tyrosinyl)-L-tyrosine
type: Class
subclass of: MOD_00692
subclass of: MOD_02058
definition: A protein modification that effectively cross-links L-tyrosine residues with an ether bond to form 3'-(O4'-L-tyrosinyl)-L-tyrosine.
diff avg: -2.02
diff formula: C 0 H -2 N 0 O 0
diff mono: -2.01565
formula: C 18 H 16 N 2 O 4
mass avg: 324.34
mass mono: 324.111
origin: Y, Y
source: natural
database_cross_reference: uniprot.ptm:PTM-0155
has_exact_synonym: (2S)-2-amino-3-[3-(4-[(2S)-2-amino-2-carboxyethyl]phenoxy)-4-hydroxyphenyl]propanoic acid
has_exact_synonym: 2-amino-3-[4-(5-[(2S)-2-amino-2-carboxyethyl]-2-hydroxyphenoxy)phenyl]propanoic acid
has_exact_synonym: 3'-(L-tyros-O4'-yl)-L-tyrosine
has_exact_synonym: CROSSLNK Isodityrosine (Tyr-Tyr)
has_exact_synonym: IsodiTyr (Crosslink)
has_exact_synonym: O-(5-(2-amino-2-carboxyethyl)-2-hydroxyphenyl)-L-tyrosine
has_exact_synonym: isodityrosine
has_obo_namespace: PSI-MOD
id: MOD:00373
comment: Cross-link 2; secondary to RESID:AA0146; From DeltaMass: Average Mass: -2.

Axiom
annotated source: 3'-(O4'-L-tyrosinyl)-L-tyrosine
annotated property: definition
annotated target: A protein modification that effectively cross-links L-tyrosine residues with an ether bond to form 3'-(O4'-L-tyrosinyl)-L-tyrosine.
database_cross_reference: DeltaMass:0
database_cross_reference: PubMed:12719529
database_cross_reference: PubMed:7115340
database_cross_reference: PubMed:8702710
database_cross_reference: RESID:AA0368

Axiom
annotated source: 3'-(O4'-L-tyrosinyl)-L-tyrosine
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-3-[3-(4-[(2S)-2-amino-2-carboxyethyl]phenoxy)-4-hydroxyphenyl]propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: 3'-(O4'-L-tyrosinyl)-L-tyrosine
annotated property: has_exact_synonym
annotated target: 2-amino-3-[4-(5-[(2S)-2-amino-2-carboxyethyl]-2-hydroxyphenoxy)phenyl]propanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 3'-(O4'-L-tyrosinyl)-L-tyrosine
annotated property: has_exact_synonym
annotated target: 3'-(L-tyros-O4'-yl)-L-tyrosine
has_synonym_type: Name from RESID

Axiom
annotated source: 3'-(O4'-L-tyrosinyl)-L-tyrosine
annotated property: has_exact_synonym
annotated target: CROSSLNK Isodityrosine (Tyr-Tyr)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: 3'-(O4'-L-tyrosinyl)-L-tyrosine
annotated property: has_exact_synonym
annotated target: IsodiTyr (Crosslink)
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: 3'-(O4'-L-tyrosinyl)-L-tyrosine
annotated property: has_exact_synonym
annotated target: O-(5-(2-amino-2-carboxyethyl)-2-hydroxyphenyl)-L-tyrosine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 3'-(O4'-L-tyrosinyl)-L-tyrosine
annotated property: has_exact_synonym
annotated target: isodityrosine
has_synonym_type: Alternate name from RESID

3,4-dihydroxy-L-arginine
type: Class
subclass of: dihydroxylated residue
subclass of: MOD_00682
definition: A protein modification that effectively converts an L-arginine residue to 3,4-dihydroxy-L-arginine.
diff avg: 32.0
diff formula: C 0 H 0 N 0 O 2
diff mono: 31.989828
formula: C 6 H 12 N 4 O 3
mass avg: 188.19
mass mono: 188.09094
origin: R
source: natural
database_cross_reference: Unimod:425
database_cross_reference: uniprot.ptm:PTM-0022
has_exact_synonym: (2S,3Xi,4Xi)-2-amino-5-carbamimidamido-3,4-dihydroxypentanoic acid
has_exact_synonym: 2-amino-5-guanidino-3,4-dihydroxypentanoic acid
has_exact_synonym: 3,4-dihydroxy-L-arginine
has_exact_synonym: 3,4-dihydroxylated L-arginine
has_exact_synonym: 34Hy2Arg
has_exact_synonym: MOD_RES 3,4-dihydroxyarginine
has_exact_synonym: beta,gamma-dihydroxyarginine
has_obo_namespace: PSI-MOD
has_related_synonym: Dioxidation
has_related_synonym: dihydroxy
id: MOD:00374

Axiom
annotated source: 3,4-dihydroxy-L-arginine
annotated property: definition
annotated target: A protein modification that effectively converts an L-arginine residue to 3,4-dihydroxy-L-arginine.
database_cross_reference: ChEBI:141829
database_cross_reference: PubMed:10978343
database_cross_reference: PubMed:12686488
database_cross_reference: RESID:AA0369
database_cross_reference: Unimod:425#R

Axiom
annotated source: 3,4-dihydroxy-L-arginine
annotated property: has_exact_synonym
annotated target: (2S,3Xi,4Xi)-2-amino-5-carbamimidamido-3,4-dihydroxypentanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: 3,4-dihydroxy-L-arginine
annotated property: has_exact_synonym
annotated target: 2-amino-5-guanidino-3,4-dihydroxypentanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 3,4-dihydroxy-L-arginine
annotated property: has_exact_synonym
annotated target: 3,4-dihydroxy-L-arginine
has_synonym_type: Name from RESID

Axiom
annotated source: 3,4-dihydroxy-L-arginine
annotated property: has_exact_synonym
annotated target: 3,4-dihydroxylated L-arginine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: 3,4-dihydroxy-L-arginine
annotated property: has_exact_synonym
annotated target: 34Hy2Arg
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: 3,4-dihydroxy-L-arginine
annotated property: has_exact_synonym
annotated target: MOD_RES 3,4-dihydroxyarginine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: 3,4-dihydroxy-L-arginine
annotated property: has_exact_synonym
annotated target: beta,gamma-dihydroxyarginine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 3,4-dihydroxy-L-arginine
annotated property: has_related_synonym
annotated target: Dioxidation
has_synonym_type: Agreed label from MS community

Axiom
annotated source: 3,4-dihydroxy-L-arginine
annotated property: has_related_synonym
annotated target: dihydroxy
has_synonym_type: Description (full_name) from Unimod

4,5-dihydroxy-L-lysine
type: Class
subclass of: dihydroxylated residue
subclass of: MOD_00681
definition: A protein modification that effectively converts an L-lysine residue to 4,5-dihydroxy-L-lysine.
diff avg: 32.0
diff formula: C 0 H 0 N 0 O 2
diff mono: 31.989828
formula: C 6 H 12 N 2 O 3
mass avg: 160.17
mass mono: 160.0848
origin: K
source: natural
database_cross_reference: Unimod:425
database_cross_reference: uniprot.ptm:PTM-0036
has_exact_synonym: (2S,4Xi,5Xi)-2,6-diamino-4,5-dihydroxyhexanoic acid
has_exact_synonym: 4,5-dihydroxy-L-lysine
has_exact_synonym: 4,5-dihydroxylated L-lysine
has_exact_synonym: 45Hy2Lys
has_exact_synonym: MOD_RES 4,5-dihydroxylysine
has_exact_synonym: alpha,epsilon-diamino-delta,gamma-dihydroxycaproic acid
has_exact_synonym: delta,gamma-dihydroxylysine
has_obo_namespace: PSI-MOD
has_related_synonym: Dioxidation
has_related_synonym: dihydroxy
id: MOD:00375

Axiom
annotated source: 4,5-dihydroxy-L-lysine
annotated property: definition
annotated target: A protein modification that effectively converts an L-lysine residue to 4,5-dihydroxy-L-lysine.
database_cross_reference: PubMed:10978343
database_cross_reference: PubMed:12686488
database_cross_reference: RESID:AA0370
database_cross_reference: Unimod:425#K

Axiom
annotated source: 4,5-dihydroxy-L-lysine
annotated property: has_exact_synonym
annotated target: (2S,4Xi,5Xi)-2,6-diamino-4,5-dihydroxyhexanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: 4,5-dihydroxy-L-lysine
annotated property: has_exact_synonym
annotated target: 4,5-dihydroxy-L-lysine
has_synonym_type: Name from RESID

Axiom
annotated source: 4,5-dihydroxy-L-lysine
annotated property: has_exact_synonym
annotated target: 4,5-dihydroxylated L-lysine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: 4,5-dihydroxy-L-lysine
annotated property: has_exact_synonym
annotated target: 45Hy2Lys
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: 4,5-dihydroxy-L-lysine
annotated property: has_exact_synonym
annotated target: MOD_RES 4,5-dihydroxylysine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: 4,5-dihydroxy-L-lysine
annotated property: has_exact_synonym
annotated target: alpha,epsilon-diamino-delta,gamma-dihydroxycaproic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 4,5-dihydroxy-L-lysine
annotated property: has_exact_synonym
annotated target: delta,gamma-dihydroxylysine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 4,5-dihydroxy-L-lysine
annotated property: has_related_synonym
annotated target: Dioxidation
has_synonym_type: Agreed label from MS community

Axiom
annotated source: 4,5-dihydroxy-L-lysine
annotated property: has_related_synonym
annotated target: dihydroxy
has_synonym_type: Description (full_name) from Unimod

1'-(phospho-5'-adenosine)-L-histidine
type: Class
subclass of: MOD_00909
subclass of: MOD_01165
definition: A protein modification that effectively crosslinks an L-histidine residue and 5'-phosphoadenosine through a phosphoramide ester bond to form 1'-(phospho-5'-adenosine)-L-histidine.
diff avg: 329.21
diff formula: C 10 H 12 N 5 O 6 P 1
diff mono: 329.05252
formula: C 16 H 19 N 8 O 7 P 1
mass avg: 466.35
mass mono: 466.11142
origin: H
source: natural
database_cross_reference: Unimod:405
has_exact_synonym: (2S)-2-amino-3-[1-(5'-adenosine phosphono)imidazol-4-yl]propanoic acid
has_exact_synonym: 1'-(phospho-5'-adenosine)-L-histidine
has_exact_synonym: ACT_SITE Tele-AMP-histidine intermediate
has_exact_synonym: L-histidine 5'-adenosine phosphoramidester
has_exact_synonym: L-histidine monoanhydride with 5'-adenylic acid
has_exact_synonym: N(tau)-5'-adenylic-L-histidine
has_exact_synonym: N1'-adenylylated histidine
has_exact_synonym: tele-5'-adenylic-L-histidine
has_obo_namespace: PSI-MOD
has_related_synonym: AMP binding site
has_related_synonym: Phosphoadenosine
id: MOD:00376
in_subset: PSI-MOD-slim

Axiom
annotated source: 1'-(phospho-5'-adenosine)-L-histidine
annotated property: definition
annotated target: A protein modification that effectively crosslinks an L-histidine residue and 5'-phosphoadenosine through a phosphoramide ester bond to form 1'-(phospho-5'-adenosine)-L-histidine.
database_cross_reference: PubMed:15182206
database_cross_reference: PubMed:9323207
database_cross_reference: RESID:AA0371
database_cross_reference: Unimod:405#H

Axiom
annotated source: 1'-(phospho-5'-adenosine)-L-histidine
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-3-[1-(5'-adenosine phosphono)imidazol-4-yl]propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: 1'-(phospho-5'-adenosine)-L-histidine
annotated property: has_exact_synonym
annotated target: 1'-(phospho-5'-adenosine)-L-histidine
has_synonym_type: Name from RESID

Axiom
annotated source: 1'-(phospho-5'-adenosine)-L-histidine
annotated property: has_exact_synonym
annotated target: ACT_SITE Tele-AMP-histidine intermediate
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: 1'-(phospho-5'-adenosine)-L-histidine
annotated property: has_exact_synonym
annotated target: L-histidine 5'-adenosine phosphoramidester
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 1'-(phospho-5'-adenosine)-L-histidine
annotated property: has_exact_synonym
annotated target: L-histidine monoanhydride with 5'-adenylic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 1'-(phospho-5'-adenosine)-L-histidine
annotated property: has_exact_synonym
annotated target: N(tau)-5'-adenylic-L-histidine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 1'-(phospho-5'-adenosine)-L-histidine
annotated property: has_exact_synonym
annotated target: N1'-adenylylated histidine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 1'-(phospho-5'-adenosine)-L-histidine
annotated property: has_exact_synonym
annotated target: tele-5'-adenylic-L-histidine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 1'-(phospho-5'-adenosine)-L-histidine
annotated property: has_related_synonym
annotated target: AMP binding site
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: 1'-(phospho-5'-adenosine)-L-histidine
annotated property: has_related_synonym
annotated target: Phosphoadenosine
has_synonym_type: Agreed label from MS community

1'-(phospho-5'-uridine)-L-histidine
type: Class
subclass of: MOD_00909
subclass of: MOD_01166
definition: A protein modification that effectively crosslinks an L-histidine residue and 5'-phosphouridine through a phosphoramide ester bond to form 1'-(phospho-5'-uridine)-L-histidine.
diff avg: 306.17
diff formula: C 9 H 11 N 2 O 8 P 1
diff mono: 306.0253
formula: C 15 H 18 N 5 O 9 P 1
mass avg: 443.31
mass mono: 443.08423
origin: H
source: natural
database_cross_reference: Unimod:417
database_cross_reference: uniprot.ptm:PTM-0500
has_exact_synonym: (S)-2-amino-3-[1-(5'-uridine phosphono)imidazol-4-yl]propanoic acid
has_exact_synonym: 1'-(phospho-5'-uridine)-L-histidine
has_exact_synonym: ACT_SITE Tele-UMP-histidine intermediate
has_exact_synonym: L-histidine 5'-uridine phosphoramidester
has_exact_synonym: L-histidine monoanhydride with 5'-uridylic acid
has_exact_synonym: MOD_RES O-UMP-histidine
has_exact_synonym: N(tau)-5'-uridylic-L-histidine
has_exact_synonym: N1'-uridylylated histidine
has_exact_synonym: tele-5'-uridylic-L-histidine
has_obo_namespace: PSI-MOD
has_related_synonym: PhosphoUridine
has_related_synonym: uridine phosphodiester
id: MOD:00377
in_subset: PSI-MOD-slim

Axiom
annotated source: 1'-(phospho-5'-uridine)-L-histidine
annotated property: definition
annotated target: A protein modification that effectively crosslinks an L-histidine residue and 5'-phosphouridine through a phosphoramide ester bond to form 1'-(phospho-5'-uridine)-L-histidine.
database_cross_reference: PubMed:11467524
database_cross_reference: PubMed:321007
database_cross_reference: PubMed:380639
database_cross_reference: PubMed:8794735
database_cross_reference: RESID:AA0372
database_cross_reference: Unimod:417#H

Axiom
annotated source: 1'-(phospho-5'-uridine)-L-histidine
annotated property: has_exact_synonym
annotated target: (S)-2-amino-3-[1-(5'-uridine phosphono)imidazol-4-yl]propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: 1'-(phospho-5'-uridine)-L-histidine
annotated property: has_exact_synonym
annotated target: 1'-(phospho-5'-uridine)-L-histidine
has_synonym_type: Name from RESID

Axiom
annotated source: 1'-(phospho-5'-uridine)-L-histidine
annotated property: has_exact_synonym
annotated target: ACT_SITE Tele-UMP-histidine intermediate
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: 1'-(phospho-5'-uridine)-L-histidine
annotated property: has_exact_synonym
annotated target: L-histidine 5'-uridine phosphoramidester
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 1'-(phospho-5'-uridine)-L-histidine
annotated property: has_exact_synonym
annotated target: L-histidine monoanhydride with 5'-uridylic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 1'-(phospho-5'-uridine)-L-histidine
annotated property: has_exact_synonym
annotated target: MOD_RES O-UMP-histidine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: 1'-(phospho-5'-uridine)-L-histidine
annotated property: has_exact_synonym
annotated target: N(tau)-5'-uridylic-L-histidine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 1'-(phospho-5'-uridine)-L-histidine
annotated property: has_exact_synonym
annotated target: N1'-uridylylated histidine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 1'-(phospho-5'-uridine)-L-histidine
annotated property: has_exact_synonym
annotated target: tele-5'-uridylic-L-histidine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 1'-(phospho-5'-uridine)-L-histidine
annotated property: has_related_synonym
annotated target: PhosphoUridine
has_synonym_type: Agreed label from MS community

Axiom
annotated source: 1'-(phospho-5'-uridine)-L-histidine
annotated property: has_related_synonym
annotated target: uridine phosphodiester
has_synonym_type: Description (full_name) from Unimod

L-aspartyl semialdehyde
type: Class
subclass of: MOD_00904
subclass of: MOD_01161
definition: A protein modification that effectively converts an L-aspartic acid residue to L-aspartyl semialdehyde.
diff avg: -16.0
diff formula: C 0 H 0 N 0 O -1
diff mono: -15.994915
formula: C 4 H 5 N 1 O 2
mass avg: 99.09
mass mono: 99.03203
origin: D
source: natural
database_cross_reference: Unimod:447
database_cross_reference: uniprot.ptm:PTM-0064
has_exact_synonym: (S)-2-amino-4-oxobutanoic acid
has_exact_synonym: L-aminosuccinaldehydic acid
has_exact_synonym: L-aminosuccinic acid semialdehyde
has_exact_synonym: L-aspartate-beta-semialdehyde
has_exact_synonym: L-aspartic beta-semialdehyde
has_exact_synonym: L-aspartyl aldehyde
has_exact_synonym: L-beta-formylalanine
has_exact_synonym: MOD_RES Aspartyl aldehyde
has_exact_synonym: aspartyl 4-semialdehyde
has_exact_synonym: aspartyl aldehyde
has_obo_namespace: PSI-MOD
has_related_synonym: Deoxy
has_related_synonym: reduction
id: MOD:00378
in_subset: PSI-MOD-slim

Axiom
annotated source: L-aspartyl semialdehyde
annotated property: definition
annotated target: A protein modification that effectively converts an L-aspartic acid residue to L-aspartyl semialdehyde.
database_cross_reference: PubMed:1093385
database_cross_reference: PubMed:14235557
database_cross_reference: PubMed:15237995
database_cross_reference: RESID:AA0373
database_cross_reference: Unimod:447#D

Axiom
annotated source: L-aspartyl semialdehyde
annotated property: has_exact_synonym
annotated target: (S)-2-amino-4-oxobutanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-aspartyl semialdehyde
annotated property: has_exact_synonym
annotated target: L-aminosuccinaldehydic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-aspartyl semialdehyde
annotated property: has_exact_synonym
annotated target: L-aminosuccinic acid semialdehyde
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-aspartyl semialdehyde
annotated property: has_exact_synonym
annotated target: L-aspartate-beta-semialdehyde
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-aspartyl semialdehyde
annotated property: has_exact_synonym
annotated target: L-aspartic beta-semialdehyde
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-aspartyl semialdehyde
annotated property: has_exact_synonym
annotated target: L-aspartyl aldehyde
has_synonym_type: Name from RESID

Axiom
annotated source: L-aspartyl semialdehyde
annotated property: has_exact_synonym
annotated target: L-beta-formylalanine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-aspartyl semialdehyde
annotated property: has_exact_synonym
annotated target: MOD_RES Aspartyl aldehyde
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-aspartyl semialdehyde
annotated property: has_exact_synonym
annotated target: aspartyl 4-semialdehyde
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: L-aspartyl semialdehyde
annotated property: has_exact_synonym
annotated target: aspartyl aldehyde
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: L-aspartyl semialdehyde
annotated property: has_related_synonym
annotated target: Deoxy
has_synonym_type: Agreed label from MS community

Axiom
annotated source: L-aspartyl semialdehyde
annotated property: has_related_synonym
annotated target: reduction
has_synonym_type: Description (full_name) from Unimod

L-serine microcin E492 siderophore ester
type: Class
subclass of: MOD_00916
definition: A protein modification that effectively converts an L-serine residue to L-serine microcin E492 siderophore ester.
diff avg: 831.69
diff formula: C 36 H 37 N 3 O 20
diff mono: 831.197
formula: C 39 H 43 N 4 O 23
mass avg: 935.78
mass mono: 935.2318
origin: S
source: natural
term spec: C-term
database_cross_reference: Unimod:448
database_cross_reference: uniprot.ptm:PTM-0276
has_exact_synonym: L-serine microcin E492 siderophore ester
has_exact_synonym: MOD_RES Serine microcin E492 siderophore ester
has_exact_synonym: N-[5-(6-O-seryl-beta-glucosyl)-2,3-dihydroxybenzoyl]-O-[N-(2,3-dihydroxybenzoyl)-O-[N-(2,3-dihydroxybenzoyl)seryl]seryl]serine
has_obo_namespace: PSI-MOD
has_related_synonym: Microcin
has_related_synonym: microcin E492 siderophore ester from serine
id: MOD:00379
comment: Unimod origin corrected [JSG].

Axiom
annotated source: L-serine microcin E492 siderophore ester
annotated property: definition
annotated target: A protein modification that effectively converts an L-serine residue to L-serine microcin E492 siderophore ester.
database_cross_reference: PubMed:15102848
database_cross_reference: RESID:AA0374
database_cross_reference: Unimod:448#C-term

Axiom
annotated source: L-serine microcin E492 siderophore ester
annotated property: has_exact_synonym
annotated target: L-serine microcin E492 siderophore ester
has_synonym_type: Name from RESID

Axiom
annotated source: L-serine microcin E492 siderophore ester
annotated property: has_exact_synonym
annotated target: MOD_RES Serine microcin E492 siderophore ester
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-serine microcin E492 siderophore ester
annotated property: has_exact_synonym
annotated target: N-[5-(6-O-seryl-beta-glucosyl)-2,3-dihydroxybenzoyl]-O-[N-(2,3-dihydroxybenzoyl)-O-[N-(2,3-dihydroxybenzoyl)seryl]seryl]serine
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-serine microcin E492 siderophore ester
annotated property: has_related_synonym
annotated target: Microcin
has_synonym_type: Agreed label from MS community

Axiom
annotated source: L-serine microcin E492 siderophore ester
annotated property: has_related_synonym
annotated target: microcin E492 siderophore ester from serine
has_synonym_type: Description (full_name) from Unimod

L-aspartyl molybdenum bis(molybdopterin guanine dinucleotide)
type: Class
subclass of: MOD_01167
subclass of: MOD_02066
definition: A protein modification that effectively converts an L-aspartic acid residue to L-aspartyl molybdenum bis(molybdopterin guanine dinucleotide).
diff avg: 1572.02
diff formula: C 40 H 47 Mo 1 N 20 O 26 P 4 S 4
diff mono: 1572.9857
formula: C 44 H 52 Mo 1 N 21 O 29 P 4 S 4
mass avg: 1687.1
mass mono: 1688.0127
origin: D
source: natural
database_cross_reference: Unimod:424
has_exact_synonym: 2-amino-5,6-dimercapto-7-methyl-3,7,8a,9-tetrahydro-8-oxa-1,3,9,10-tetraazaanthracen-4-one guanosine dinucleotide
has_exact_synonym: L-aspartyl molybdenum bis(molybdopterin guanine dinucleotide)
has_exact_synonym: bis[8-amino-1a,2,4a,5,6,7,10-heptahydro-2-(trihydrogen diphosphate 5'-ester with guanosine)methyl-6-oxo-3,4-disulfanyl-pteridino[6,7-5,6]pyranoato-S3,S4]-aspartyl-molybdenum
has_exact_synonym: nitrate reductase A aspartyl Mo-bisMGD cofactor
has_exact_synonym: phosphoric acid 4-(2-amino-4-oxo-3,4,5,6,-tetrahydro-pteridin-6-yl)-2-hydroxy-3,4-dimercapto-but-3-en-yl ester guanylate ester
has_obo_namespace: PSI-MOD
has_related_synonym: MolybdopterinGD
has_related_synonym: molybdenum bis(molybdopterin guanine dinucleotide)
id: MOD:00380

Axiom
annotated source: L-aspartyl molybdenum bis(molybdopterin guanine dinucleotide)
annotated property: definition
annotated target: A protein modification that effectively converts an L-aspartic acid residue to L-aspartyl molybdenum bis(molybdopterin guanine dinucleotide).
database_cross_reference: PubMed:12910261
database_cross_reference: PubMed:14725769
database_cross_reference: RESID:AA0375
database_cross_reference: Unimod:424#D

Axiom
annotated source: L-aspartyl molybdenum bis(molybdopterin guanine dinucleotide)
annotated property: has_exact_synonym
annotated target: 2-amino-5,6-dimercapto-7-methyl-3,7,8a,9-tetrahydro-8-oxa-1,3,9,10-tetraazaanthracen-4-one guanosine dinucleotide
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-aspartyl molybdenum bis(molybdopterin guanine dinucleotide)
annotated property: has_exact_synonym
annotated target: L-aspartyl molybdenum bis(molybdopterin guanine dinucleotide)
has_synonym_type: Name from RESID

Axiom
annotated source: L-aspartyl molybdenum bis(molybdopterin guanine dinucleotide)
annotated property: has_exact_synonym
annotated target: bis[8-amino-1a,2,4a,5,6,7,10-heptahydro-2-(trihydrogen diphosphate 5'-ester with guanosine)methyl-6-oxo-3,4-disulfanyl-pteridino[6,7-5,6]pyranoato-S3,S4]-aspartyl-molybdenum
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-aspartyl molybdenum bis(molybdopterin guanine dinucleotide)
annotated property: has_exact_synonym
annotated target: nitrate reductase A aspartyl Mo-bisMGD cofactor
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-aspartyl molybdenum bis(molybdopterin guanine dinucleotide)
annotated property: has_exact_synonym
annotated target: phosphoric acid 4-(2-amino-4-oxo-3,4,5,6,-tetrahydro-pteridin-6-yl)-2-hydroxy-3,4-dimercapto-but-3-en-yl ester guanylate ester
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-aspartyl molybdenum bis(molybdopterin guanine dinucleotide)
annotated property: has_related_synonym
annotated target: MolybdopterinGD
has_synonym_type: Agreed label from MS community

Axiom
annotated source: L-aspartyl molybdenum bis(molybdopterin guanine dinucleotide)
annotated property: has_related_synonym
annotated target: molybdenum bis(molybdopterin guanine dinucleotide)
has_synonym_type: Description (full_name) from Unimod

L-selenocysteinyl tungsten bis(molybdopterin guanine dinucleotide) (Sec)
type: Class
subclass of: MOD_00746
subclass of: MOD_00748
subclass of: MOD_02073
definition: A protein modification that effectively converts an L-selenocysteine residue to L-selenocysteinyl tungsten bis(molybdopterin guanine dinucleotide).
diff avg: 1691.97
diff formula: C 40 H 47 N 20 O 26 P 4 S 5 Se 0 W 1
diff mono: 1691.0034
formula: C 43 H 52 N 21 O 27 P 4 S 5 Se 1 W 1
mass avg: 1842.02
mass mono: 1841.957
origin: U
source: natural
has_obo_namespace: PSI-MOD
id: MOD:00381

Axiom
annotated source: L-selenocysteinyl tungsten bis(molybdopterin guanine dinucleotide) (Sec)
annotated property: definition
annotated target: A protein modification that effectively converts an L-selenocysteine residue to L-selenocysteinyl tungsten bis(molybdopterin guanine dinucleotide).
database_cross_reference: PubMed:11372198
database_cross_reference: PubMed:12220497
database_cross_reference: RESID:AA0376#SEC

3-(2-methylthio)ethyl-6-(4-hydroxybenzylidene)-5-iminopiperazin-2-one
type: Class
subclass of: MOD_02052
subclass of: MOD_02058
definition: A protein modification that effectively crosslinks an L-methionyl-L-tyrosine dipeptide to form 3-(2-methylthio)ethyl-6-(4-hydroxybenzylidene)-5-iminopiperazin-2-one.
diff avg: -20.03
diff formula: C 0 H -4 N 0 O -1 S 0
diff mono: -20.026215
formula: C 14 H 15 N 2 O 2 S 1
mass avg: 275.35
mass mono: 275.08542
origin: M, Y
source: hypothetical
term spec: N-term
has_exact_synonym: 3-(2-methylsulfanyl)ethyl-6-(4-hydroxybenzylidene)-5-iminopiperazin-2-one
has_exact_synonym: 3-(2-methylthio)ethyl-6-(4-hydroxybenzylidene)-5-amino-3,6-didehydropyrazin-2-ol
has_exact_synonym: 3-(2-methylthio)ethyl-6-(4-hydroxybenzylidene)-5-iminopiperazin-2-one
has_exact_synonym: GFP-like chromoprotein asFP595 chromophore
has_exact_synonym: L-methionyl-L-tyrosyl-2-keto-5-iminopiperazine
has_obo_namespace: PSI-MOD
id: MOD:00382
comment: carboxamidine; cross-link 1. This is a deprecated entry in RESID. It probably does not occur naturally [JSG].

Axiom
annotated source: 3-(2-methylthio)ethyl-6-(4-hydroxybenzylidene)-5-iminopiperazin-2-one
annotated property: definition
annotated target: A protein modification that effectively crosslinks an L-methionyl-L-tyrosine dipeptide to form 3-(2-methylthio)ethyl-6-(4-hydroxybenzylidene)-5-iminopiperazin-2-one.
database_cross_reference: PubMed:10852900
database_cross_reference: PubMed:11259412
database_cross_reference: PubMed:15491166
database_cross_reference: RESID:AA0377

Axiom
annotated source: 3-(2-methylthio)ethyl-6-(4-hydroxybenzylidene)-5-iminopiperazin-2-one
annotated property: has_exact_synonym
annotated target: 3-(2-methylsulfanyl)ethyl-6-(4-hydroxybenzylidene)-5-iminopiperazin-2-one
has_synonym_type: Systematic name from RESID

Axiom
annotated source: 3-(2-methylthio)ethyl-6-(4-hydroxybenzylidene)-5-iminopiperazin-2-one
annotated property: has_exact_synonym
annotated target: 3-(2-methylthio)ethyl-6-(4-hydroxybenzylidene)-5-amino-3,6-didehydropyrazin-2-ol
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 3-(2-methylthio)ethyl-6-(4-hydroxybenzylidene)-5-iminopiperazin-2-one
annotated property: has_exact_synonym
annotated target: 3-(2-methylthio)ethyl-6-(4-hydroxybenzylidene)-5-iminopiperazin-2-one
has_synonym_type: Name from RESID

Axiom
annotated source: 3-(2-methylthio)ethyl-6-(4-hydroxybenzylidene)-5-iminopiperazin-2-one
annotated property: has_exact_synonym
annotated target: GFP-like chromoprotein asFP595 chromophore
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 3-(2-methylthio)ethyl-6-(4-hydroxybenzylidene)-5-iminopiperazin-2-one
annotated property: has_exact_synonym
annotated target: L-methionyl-L-tyrosyl-2-keto-5-iminopiperazine
has_synonym_type: Alternate name from RESID

2-imino-glutamic acid 5-imidazolinone glycine
type: Class
subclass of: MOD_01882
subclass of: MOD_02045
subclass of: MOD_02047
definition: A protein modification that effectively crosslinks an L-glutamic acid residue and a glycine residue to form 2-imino-glutamic acid 5-imidazolinone glycine.
diff avg: -20.03
diff formula: C 0 H -4 N 0 O -1
diff mono: -20.026215
formula: C 7 H 6 N 2 O 3
mass avg: 166.14
mass mono: 166.03784
origin: E, G
source: hypothetical
database_cross_reference: uniprot.ptm:PTM-0014
has_exact_synonym: 2,N-didehydroglutamyl-5-imidazolinone glycine
has_exact_synonym: 2-(3-carboxy-1-iminopropyl)-1-carboxymethyl-1-imidazolin-5-one
has_exact_synonym: 2-imino-glutamic acid 5-imidazolinone glycine
has_exact_synonym: 2-imino-glutamyl-5-imidazolinone glycine
has_exact_synonym: 4-[1-(carboxymethyl)-5-oxo-4,5-dihydro-1H-imidazol-2-yl]-4-iminobutanoic acid
has_exact_synonym: CROSSLNK 2-iminomethyl-5-imidazolinone (Glu-Gly)
has_exact_synonym: [2-(3-carboxy-1-iminopropyl)-5-oxo-4,5-dihydro-imidazol-1-yl]-acetic acid
has_exact_synonym: para-hydroxybenzylidene-imidazolidinone chromophore
has_obo_namespace: PSI-MOD
id: MOD:00383
comment: Cross-link 2; carboxamidine; cross-link 1; incidental to RESID:AA0183; incidental to RESID:AA0365.

Axiom
annotated source: 2-imino-glutamic acid 5-imidazolinone glycine
annotated property: definition
annotated target: A protein modification that effectively crosslinks an L-glutamic acid residue and a glycine residue to form 2-imino-glutamic acid 5-imidazolinone glycine.
database_cross_reference: PubMed:11682051
database_cross_reference: RESID:AA0378

Axiom
annotated source: 2-imino-glutamic acid 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: 2,N-didehydroglutamyl-5-imidazolinone glycine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 2-imino-glutamic acid 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: 2-(3-carboxy-1-iminopropyl)-1-carboxymethyl-1-imidazolin-5-one
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 2-imino-glutamic acid 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: 2-imino-glutamic acid 5-imidazolinone glycine
has_synonym_type: Name from RESID

Axiom
annotated source: 2-imino-glutamic acid 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: 2-imino-glutamyl-5-imidazolinone glycine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 2-imino-glutamic acid 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: 4-[1-(carboxymethyl)-5-oxo-4,5-dihydro-1H-imidazol-2-yl]-4-iminobutanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: 2-imino-glutamic acid 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: CROSSLNK 2-iminomethyl-5-imidazolinone (Glu-Gly)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: 2-imino-glutamic acid 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: [2-(3-carboxy-1-iminopropyl)-5-oxo-4,5-dihydro-imidazol-1-yl]-acetic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 2-imino-glutamic acid 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: para-hydroxybenzylidene-imidazolidinone chromophore
has_synonym_type: Alternate name from RESID

2-imino-methionine 5-imidazolinone glycine
type: Class
subclass of: MOD_01882
subclass of: MOD_02047
subclass of: MOD_02052
definition: A protein modification that effectively crosslinks an L-methionine residue and a glycine residue to form 2-imino-methionine 5-imidazolinone glycine.
diff avg: -20.03
diff formula: C 0 H -4 N 0 O -1 S 0
diff mono: -20.026215
formula: C 7 H 8 N 2 O 1 S 1
mass avg: 168.21
mass mono: 168.03574
origin: G, M
source: natural
database_cross_reference: uniprot.ptm:PTM-0015
has_exact_synonym: (2-[1-imino-3-(methylsulfanyl)propyl]-5-oxo-4,5-dihydro-imidazol-1-yl)acetic acid
has_exact_synonym: (2-[3-(methylsulfanyl)propanimidoyl]-5-oxo-4,5-dihydro-1H-imidazol-1-yl)acetic acid
has_exact_synonym: 2,N-didehydromethionyl-5-imidazolinone glycine
has_exact_synonym: 2-[1-imino-3-(methylsulfanyl)propyl]-1-carboxymethyl-1-imidazolin-5-one
has_exact_synonym: 2-imino-methionine 5-imidazolinone glycine
has_exact_synonym: 2-imino-methionyl-5-imidazolinone glycine
has_exact_synonym: CROSSLNK 2-iminomethyl-5-imidazolinone (Met-Gly)
has_exact_synonym: GFP-like chromoprotein asFP595 chromophore
has_exact_synonym: para-hydroxybenzylidene-imidazolidinone chromophore
has_exact_synonym: red fluorescent protein eqFP611 chromophore
has_obo_namespace: PSI-MOD
id: MOD:00384
comment: Cross-link 2; carboxamidine; cross-link 1; incidental to RESID:AA0183; incidental to RESID:AA0365.

Axiom
annotated source: 2-imino-methionine 5-imidazolinone glycine
annotated property: definition
annotated target: A protein modification that effectively crosslinks an L-methionine residue and a glycine residue to form 2-imino-methionine 5-imidazolinone glycine.
database_cross_reference: PubMed:10852900
database_cross_reference: PubMed:12185250
database_cross_reference: PubMed:12909624
database_cross_reference: PubMed:15542608
database_cross_reference: RESID:AA0379

Axiom
annotated source: 2-imino-methionine 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: (2-[1-imino-3-(methylsulfanyl)propyl]-5-oxo-4,5-dihydro-imidazol-1-yl)acetic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 2-imino-methionine 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: (2-[3-(methylsulfanyl)propanimidoyl]-5-oxo-4,5-dihydro-1H-imidazol-1-yl)acetic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: 2-imino-methionine 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: 2,N-didehydromethionyl-5-imidazolinone glycine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 2-imino-methionine 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: 2-[1-imino-3-(methylsulfanyl)propyl]-1-carboxymethyl-1-imidazolin-5-one
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 2-imino-methionine 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: 2-imino-methionine 5-imidazolinone glycine
has_synonym_type: Name from RESID

Axiom
annotated source: 2-imino-methionine 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: 2-imino-methionyl-5-imidazolinone glycine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 2-imino-methionine 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: CROSSLNK 2-iminomethyl-5-imidazolinone (Met-Gly)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: 2-imino-methionine 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: GFP-like chromoprotein asFP595 chromophore
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 2-imino-methionine 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: para-hydroxybenzylidene-imidazolidinone chromophore
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 2-imino-methionine 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: red fluorescent protein eqFP611 chromophore
has_synonym_type: Alternate name from RESID

L-asparagine 5-imidazolinone glycine
type: Class
subclass of: MOD_00954
subclass of: MOD_01882
subclass of: MOD_02042
subclass of: MOD_02047
definition: A protein modification that effectively crosslinks an L-asparagine residue and a glycine residue to form L-asparagine 5-imidazolinone glycine.
diff avg: -18.02
diff formula: C 0 H -2 N 0 O -1
diff mono: -18.010565
formula: C 6 H 7 N 3 O 2
mass avg: 153.14
mass mono: 153.05383
origin: G, N
source: hypothetical
database_cross_reference: uniprot.ptm:PTM-0046
has_exact_synonym: (2-[(1S)-1,3-diamino-3-oxopropyl]-5-oxo-4,5-dihydro-1H-imidazol-1-yl)acetic acid
has_exact_synonym: 2-[(S)-1,3-diamino-3-oxopropyl]-1-carboxymethyl-1-imidazolin-5-one
has_exact_synonym: CROSSLNK 5-imidazolinone (Asn-Gly)
has_exact_synonym: L-asparagine 5-imidazolinone glycine
has_exact_synonym: Zoanthus sp. fluorescent protein FP506 chromophore
has_exact_synonym: [2-(1,3-diamino-3-oxopropyl)-5-oxo-4,5-dihydro-imidazol-1-yl]-acetic acid
has_exact_synonym: asparaginyl-5-imidazolinone glycine
has_exact_synonym: para-hydroxybenzylidene-imidazolidinone chromophore
has_obo_namespace: PSI-MOD
id: MOD:00385
comment: Cross-link 2; carboxamidine; incidental to RESID:AA0183; incidental to RESID:AA0365.

Axiom
annotated source: L-asparagine 5-imidazolinone glycine
annotated property: definition
annotated target: A protein modification that effectively crosslinks an L-asparagine residue and a glycine residue to form L-asparagine 5-imidazolinone glycine.
database_cross_reference: PubMed:10504696
database_cross_reference: RESID:AA0380

Axiom
annotated source: L-asparagine 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: (2-[(1S)-1,3-diamino-3-oxopropyl]-5-oxo-4,5-dihydro-1H-imidazol-1-yl)acetic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-asparagine 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: 2-[(S)-1,3-diamino-3-oxopropyl]-1-carboxymethyl-1-imidazolin-5-one
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-asparagine 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: CROSSLNK 5-imidazolinone (Asn-Gly)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-asparagine 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: L-asparagine 5-imidazolinone glycine
has_synonym_type: Name from RESID

Axiom
annotated source: L-asparagine 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: Zoanthus sp. fluorescent protein FP506 chromophore
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-asparagine 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: [2-(1,3-diamino-3-oxopropyl)-5-oxo-4,5-dihydro-imidazol-1-yl]-acetic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-asparagine 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: asparaginyl-5-imidazolinone glycine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-asparagine 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: para-hydroxybenzylidene-imidazolidinone chromophore
has_synonym_type: Alternate name from RESID

L-lysine 5-imidazolinone glycine
type: Class
subclass of: MOD_00954
subclass of: MOD_01882
subclass of: MOD_02047
subclass of: MOD_02051
definition: A protein modification that effectively crosslinks an L-lysine residue and a glycine residue to form L-lysine 5-imidazolinone glycine.
diff avg: -18.02
diff formula: C 0 H -2 N 0 O -1
diff mono: -18.010565
formula: C 8 H 13 N 3 O 1
mass avg: 167.21
mass mono: 167.10587
origin: G, K
source: hypothetical
database_cross_reference: uniprot.ptm:PTM-0048
has_exact_synonym: (2-[(1S)-1,5-diaminopentyl]-5-oxo-4,5-dihydro-1H-imidazol-1-yl)acetic acid
has_exact_synonym: 2-[(S)-1,5-diaminopentanyl]-1-carboxymethyl-1-imidazolin-5-one
has_exact_synonym: Anemonia majano fluorescent protein FP486 chromophore
has_exact_synonym: CROSSLNK 5-imidazolinone (Lys-Gly)
has_exact_synonym: L-lysine 5-imidazolinone glycine
has_exact_synonym: [2-(1,5-diaminopentanyl)-5-oxo-4,5-dihydro-imidazol-1-yl]-acetic acid
has_exact_synonym: lysyl-5-imidazolinone glycine
has_exact_synonym: para-hydroxybenzylidene-imidazolidinone chromophore
has_obo_namespace: PSI-MOD
id: MOD:00386
comment: Cross-link 2; carboxamidine; incidental to RESID:AA0183; incidental to RESID:AA0365.

Axiom
annotated source: L-lysine 5-imidazolinone glycine
annotated property: definition
annotated target: A protein modification that effectively crosslinks an L-lysine residue and a glycine residue to form L-lysine 5-imidazolinone glycine.
database_cross_reference: PubMed:10504696
database_cross_reference: RESID:AA0381

Axiom
annotated source: L-lysine 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: (2-[(1S)-1,5-diaminopentyl]-5-oxo-4,5-dihydro-1H-imidazol-1-yl)acetic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-lysine 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: 2-[(S)-1,5-diaminopentanyl]-1-carboxymethyl-1-imidazolin-5-one
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-lysine 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: Anemonia majano fluorescent protein FP486 chromophore
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-lysine 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: CROSSLNK 5-imidazolinone (Lys-Gly)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-lysine 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: L-lysine 5-imidazolinone glycine
has_synonym_type: Name from RESID

Axiom
annotated source: L-lysine 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: [2-(1,5-diaminopentanyl)-5-oxo-4,5-dihydro-imidazol-1-yl]-acetic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-lysine 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: lysyl-5-imidazolinone glycine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-lysine 5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: para-hydroxybenzylidene-imidazolidinone chromophore
has_synonym_type: Alternate name from RESID

2-tetrahydropyridinyl-5-imidazolinone glycine
type: Class
subclass of: MOD_01882
subclass of: MOD_02047
subclass of: MOD_02051
definition: A protein modification that effectively crosslinks an L-lysine residue and a glycine residue to form 2-tetrahydropyridinyl-5-imidazolinone glycine.
diff avg: -37.06
diff formula: C 0 H -7 N -1 O -1
diff mono: -37.052765
formula: C 8 H 9 N 2 O 1
mass avg: 149.17
mass mono: 149.07149
origin: G, K
source: natural
term spec: N-term
database_cross_reference: uniprot.ptm:PTM-0018
has_exact_synonym: 2-(3,4,5,6-tetrahydropyridin-2-yl)-1-carboxymethyl-1-imidazolin-5-one
has_exact_synonym: 2-(tetrahydropyrid-2-yl)-5-imidazolinone glycine
has_exact_synonym: 2-tetrahydropyridinyl-5-imidazolinone glycine
has_exact_synonym: CROSSLNK 2-tetrahydro-2-pyridyl-5-imidazolinone (Lys-Gly)
has_exact_synonym: Zoanthus sp. fluorescent protein zFP538 chromophore
has_exact_synonym: [5-oxo-2-(3,4,5,6-tetrahydropyridin-2-yl)-4,5-dihydro-1H-imidazol-1-yl]acetic acid
has_exact_synonym: para-hydroxybenzylidene-imidazolidinone chromophore
has_obo_namespace: PSI-MOD
id: MOD:00387
comment: Cross-link 2; carboxamidine; incidental to RESID:AA0183; incidental to RESID:AA0365.

Axiom
annotated source: 2-tetrahydropyridinyl-5-imidazolinone glycine
annotated property: definition
annotated target: A protein modification that effectively crosslinks an L-lysine residue and a glycine residue to form 2-tetrahydropyridinyl-5-imidazolinone glycine.
database_cross_reference: PubMed:10504696
database_cross_reference: PubMed:15628861
database_cross_reference: RESID:AA0382

Axiom
annotated source: 2-tetrahydropyridinyl-5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: 2-(3,4,5,6-tetrahydropyridin-2-yl)-1-carboxymethyl-1-imidazolin-5-one
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 2-tetrahydropyridinyl-5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: 2-(tetrahydropyrid-2-yl)-5-imidazolinone glycine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 2-tetrahydropyridinyl-5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: 2-tetrahydropyridinyl-5-imidazolinone glycine
has_synonym_type: Name from RESID

Axiom
annotated source: 2-tetrahydropyridinyl-5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: CROSSLNK 2-tetrahydro-2-pyridyl-5-imidazolinone (Lys-Gly)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: 2-tetrahydropyridinyl-5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: Zoanthus sp. fluorescent protein zFP538 chromophore
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 2-tetrahydropyridinyl-5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: [5-oxo-2-(3,4,5,6-tetrahydropyridin-2-yl)-4,5-dihydro-1H-imidazol-1-yl]acetic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 2-tetrahydropyridinyl-5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: [5-oxo-2-(3,4,5,6-tetrahydropyridin-2-yl)-4,5-dihydro-1H-imidazol-1-yl]acetic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: 2-tetrahydropyridinyl-5-imidazolinone glycine
annotated property: has_exact_synonym
annotated target: para-hydroxybenzylidene-imidazolidinone chromophore
has_synonym_type: Alternate name from RESID

L-alanyl-pentaglycyl-murein peptidoglycan
type: Class
subclass of: MOD_00901
subclass of: MOD_01159
definition: A protein modification that effectively attaches an L-alanine residue to murein peptidoglycan by a pentaglycine linker peptide.
origin: A
source: hypothetical
term spec: C-term
database_cross_reference: uniprot.ptm:PTM-0245
has_exact_synonym: (2R,6S)-2-(N-mureinyl-(R)-alanyl-(S)-isoglutamyl)amino-6-(alanyl-pentaglycyl)amino-pimeloyl-(S)-alanyl-(S)-alanine
has_exact_synonym: L-alanyl-pentaglycyl-murein peptidoglycan
has_exact_synonym: MOD_RES Pentaglycyl murein peptidoglycan amidated alanine
has_obo_namespace: PSI-MOD
id: MOD:00388

Axiom
annotated source: L-alanyl-pentaglycyl-murein peptidoglycan
annotated property: definition
annotated target: A protein modification that effectively attaches an L-alanine residue to murein peptidoglycan by a pentaglycine linker peptide.
database_cross_reference: PubMed:8163519
database_cross_reference: RESID:AA0383

Axiom
annotated source: L-alanyl-pentaglycyl-murein peptidoglycan
annotated property: has_exact_synonym
annotated target: (2R,6S)-2-(N-mureinyl-(R)-alanyl-(S)-isoglutamyl)amino-6-(alanyl-pentaglycyl)amino-pimeloyl-(S)-alanyl-(S)-alanine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-alanyl-pentaglycyl-murein peptidoglycan
annotated property: has_exact_synonym
annotated target: L-alanyl-pentaglycyl-murein peptidoglycan
has_synonym_type: Name from RESID

Axiom
annotated source: L-alanyl-pentaglycyl-murein peptidoglycan
annotated property: has_exact_synonym
annotated target: MOD_RES Pentaglycyl murein peptidoglycan amidated alanine
has_synonym_type: Protein feature description from UniProtKB

N-formyl-L-proline
type: Class
subclass of: N-formylated residue
subclass of: MOD_00915
subclass of: MOD_01696
definition: A protein modification that effectively converts an L-proline residue to N-formyl-L-proline.
diff avg: 28.01
diff formula: C 1 H 0 N 0 O 1
diff mono: 27.994915
formula: C 6 H 8 N 1 O 2
mass avg: 126.14
mass mono: 126.055504
origin: P
source: hypothetical
term spec: N-term
database_cross_reference: Unimod:122
has_exact_synonym: (2S)-1-formylpyrrolidine-2-carboxylic acid
has_exact_synonym: 1-formyl-2-pyrrolidinecarboxylic acid
has_exact_synonym: 1-formylproline
has_exact_synonym: N-formyl-L-proline
has_exact_synonym: N-formylated L-proline
has_exact_synonym: NFoPro
has_obo_namespace: PSI-MOD
id: MOD:00389
comment: CAUTION - observations of this modification can be attributed to unintended artifactual production, or to spurious peptide MS identification. This modification is probably not a natural post-translational modification [JSG].

Axiom
annotated source: N-formyl-L-proline
annotated property: definition
annotated target: A protein modification that effectively converts an L-proline residue to N-formyl-L-proline.
database_cross_reference: PubMed:12051774
database_cross_reference: PubMed:5464655
database_cross_reference: RESID:AA0384
database_cross_reference: Unimod:122#N-term

Axiom
annotated source: N-formyl-L-proline
annotated property: has_exact_synonym
annotated target: (2S)-1-formylpyrrolidine-2-carboxylic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N-formyl-L-proline
annotated property: has_exact_synonym
annotated target: 1-formyl-2-pyrrolidinecarboxylic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-formyl-L-proline
annotated property: has_exact_synonym
annotated target: 1-formylproline
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-formyl-L-proline
annotated property: has_exact_synonym
annotated target: N-formyl-L-proline
has_synonym_type: Name from RESID

Axiom
annotated source: N-formyl-L-proline
annotated property: has_exact_synonym
annotated target: N-formylated L-proline
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: N-formyl-L-proline
annotated property: has_exact_synonym
annotated target: NFoPro
has_synonym_type: Short label curated by PSI-MOD

O-decanoyl-L-serine
type: Class
subclass of: MOD_00668
subclass of: MOD_02003
definition: A protein modification that effectively converts an L-serine residue to O-decanoyl-L-serine.
diff avg: 154.25
diff formula: C 10 H 18 N 0 O 1
diff mono: 154.13576
formula: C 13 H 23 N 1 O 3
mass avg: 241.33
mass mono: 241.1678
origin: S
source: natural
database_cross_reference: Unimod:449
database_cross_reference: uniprot.ptm:PTM-0234
has_exact_synonym: (2S)-2-amino-3-(decanoyloxy)propanoic acid
has_exact_synonym: L-serine decanoate ester
has_exact_synonym: LIPID O-decanoyl serine
has_exact_synonym: O-decanoyl-L-serine
has_exact_synonym: O-decanoylated L-serine
has_exact_synonym: O3-decanoyl-L-serine
has_exact_synonym: ODecSer
has_obo_namespace: PSI-MOD
has_related_synonym: Decanoyl
has_related_synonym: lipid
id: MOD:00390

Axiom
annotated source: O-decanoyl-L-serine
annotated property: definition
annotated target: A protein modification that effectively converts an L-serine residue to O-decanoyl-L-serine.
database_cross_reference: PubMed:12630926
database_cross_reference: RESID:AA0385
database_cross_reference: Unimod:449#S

Axiom
annotated source: O-decanoyl-L-serine
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-3-(decanoyloxy)propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: O-decanoyl-L-serine
annotated property: has_exact_synonym
annotated target: L-serine decanoate ester
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-decanoyl-L-serine
annotated property: has_exact_synonym
annotated target: LIPID O-decanoyl serine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: O-decanoyl-L-serine
annotated property: has_exact_synonym
annotated target: O-decanoyl-L-serine
has_synonym_type: Name from RESID

Axiom
annotated source: O-decanoyl-L-serine
annotated property: has_exact_synonym
annotated target: O-decanoylated L-serine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: O-decanoyl-L-serine
annotated property: has_exact_synonym
annotated target: O3-decanoyl-L-serine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-decanoyl-L-serine
annotated property: has_exact_synonym
annotated target: ODecSer
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: O-decanoyl-L-serine
annotated property: has_related_synonym
annotated target: Decanoyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: O-decanoyl-L-serine
annotated property: has_related_synonym
annotated target: lipid
has_synonym_type: Description (full_name) from Unimod

O-octanoyl-L-threonine
type: Class
subclass of: MOD_00669
subclass of: MOD_02004
definition: A protein modification that effectively converts an L-threonine residue to O-octanoyl-L-threonine.
diff avg: 126.2
diff formula: C 8 H 14 N 0 O 1
diff mono: 126.10446
formula: C 12 H 21 N 1 O 3
mass avg: 227.3
mass mono: 227.15215
origin: T
source: natural
database_cross_reference: Unimod:426
database_cross_reference: uniprot.ptm:PTM-0240
has_exact_synonym: (2S)-2-amino-3-(octanoyloxy)butanoic acid
has_exact_synonym: L-threonine octanoate ester
has_exact_synonym: LIPID O-octanoyl threonine
has_exact_synonym: O-octanoyl-L-threonine
has_exact_synonym: O-octanoylated L-threonine
has_exact_synonym: O3-octanoyl-L-threonine
has_exact_synonym: OOctThr
has_obo_namespace: PSI-MOD
has_related_synonym: Octanoyl
has_related_synonym: octanoyl
id: MOD:00391
in_subset: PSI-MOD-slim

Axiom
annotated source: O-octanoyl-L-threonine
annotated property: definition
annotated target: A protein modification that effectively converts an L-threonine residue to O-octanoyl-L-threonine.
database_cross_reference: PubMed:11546772
database_cross_reference: PubMed:12716131
database_cross_reference: RESID:AA0386
database_cross_reference: Unimod:426#T

Axiom
annotated source: O-octanoyl-L-threonine
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-3-(octanoyloxy)butanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: O-octanoyl-L-threonine
annotated property: has_exact_synonym
annotated target: L-threonine octanoate ester
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-octanoyl-L-threonine
annotated property: has_exact_synonym
annotated target: LIPID O-octanoyl threonine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: O-octanoyl-L-threonine
annotated property: has_exact_synonym
annotated target: O-octanoyl-L-threonine
has_synonym_type: Name from RESID

Axiom
annotated source: O-octanoyl-L-threonine
annotated property: has_exact_synonym
annotated target: O-octanoylated L-threonine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: O-octanoyl-L-threonine
annotated property: has_exact_synonym
annotated target: O3-octanoyl-L-threonine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-octanoyl-L-threonine
annotated property: has_exact_synonym
annotated target: OOctThr
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: O-octanoyl-L-threonine
annotated property: has_related_synonym
annotated target: Octanoyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: O-octanoyl-L-threonine
annotated property: has_related_synonym
annotated target: octanoyl
has_synonym_type: Description (full_name) from Unimod

O-decanoyl-L-threonine
type: Class
subclass of: MOD_00668
subclass of: MOD_02004
definition: A protein modification that effectively converts an L-threonine residue to O-decanoyl-L-threonine.
diff avg: 154.25
diff formula: C 10 H 18 N 0 O 1
diff mono: 154.13576
formula: C 14 H 25 N 1 O 3
mass avg: 255.36
mass mono: 255.18344
origin: T
source: natural
database_cross_reference: Unimod:449
database_cross_reference: uniprot.ptm:PTM-0235
has_exact_synonym: (2S)-2-amino-3-(decanoyloxy)propanoic acid
has_exact_synonym: L-threonine decanoate ester
has_exact_synonym: LIPID O-decanoyl threonine
has_exact_synonym: O-decanoyl-L-threonine
has_exact_synonym: O-decanoylated L-threonine
has_exact_synonym: O3-decanoyl-L-threonine
has_exact_synonym: ODecThr
has_obo_namespace: PSI-MOD
has_related_synonym: Decanoyl
has_related_synonym: lipid
id: MOD:00392

Axiom
annotated source: O-decanoyl-L-threonine
annotated property: definition
annotated target: A protein modification that effectively converts an L-threonine residue to O-decanoyl-L-threonine.
database_cross_reference: PubMed:11546772
database_cross_reference: RESID:AA0387
database_cross_reference: Unimod:449#T

Axiom
annotated source: O-decanoyl-L-threonine
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-3-(decanoyloxy)propanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: O-decanoyl-L-threonine
annotated property: has_exact_synonym
annotated target: L-threonine decanoate ester
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-decanoyl-L-threonine
annotated property: has_exact_synonym
annotated target: LIPID O-decanoyl threonine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: O-decanoyl-L-threonine
annotated property: has_exact_synonym
annotated target: O-decanoyl-L-threonine
has_synonym_type: Name from RESID

Axiom
annotated source: O-decanoyl-L-threonine
annotated property: has_exact_synonym
annotated target: O-decanoylated L-threonine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: O-decanoyl-L-threonine
annotated property: has_exact_synonym
annotated target: O3-decanoyl-L-threonine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: O-decanoyl-L-threonine
annotated property: has_exact_synonym
annotated target: ODecThr
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: O-decanoyl-L-threonine
annotated property: has_related_synonym
annotated target: Decanoyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: O-decanoyl-L-threonine
annotated property: has_related_synonym
annotated target: lipid
has_synonym_type: Description (full_name) from Unimod

O-methylated residue
type: Class
subclass of: methylated residue
definition: A protein modification that effectively replaces a hydroxyl group hydrogen with a methyl group to produce either an ether from an alcohol or an ester from an acid.
has_exact_synonym: OMeRes
has_obo_namespace: PSI-MOD
id: MOD:00393
in_subset: PSI-MOD-slim

Axiom
annotated source: O-methylated residue
annotated property: definition
annotated target: A protein modification that effectively replaces a hydroxyl group hydrogen with a methyl group to produce either an ether from an alcohol or an ester from an acid.
database_cross_reference: PubMed:18688235

Axiom
annotated source: O-methylated residue
annotated property: has_exact_synonym
annotated target: OMeRes
has_synonym_type: Short label curated by PSI-MOD

monoacetylated residue
type: Class
subclass of: MOD_02078
definition: A protein modification that effectively replaces one hydrogen atom with one acetyl group.
diff avg: 42.04
diff formula: C 2 H 2 O 1
diff mono: 42.010567
origin: X
source: artifact
database_cross_reference: Unimod:1
has_exact_synonym: Ac1Res
has_exact_synonym: Acetylation (N terminus, N epsilon of Lysine, O of Serine) (Ac)
has_obo_namespace: PSI-MOD
has_related_synonym: Acetyl
has_related_synonym: Acetylation
id: MOD:00394
in_subset: PSI-MOD-slim
comment: Amino hydrogens are replaced to produce amides; hydroxyl hydrogens are replaced to produce esters; and hydrosulfanyl (thiol) hydrogens are replaced to produce sulfanyl esters (thiol esters). From DeltaMass: Average Mass: 42

Axiom
annotated source: monoacetylated residue
annotated property: definition
annotated target: A protein modification that effectively replaces one hydrogen atom with one acetyl group.
database_cross_reference: DeltaMass:0
database_cross_reference: PubMed:11857757
database_cross_reference: PubMed:11999733
database_cross_reference: PubMed:12175151
database_cross_reference: PubMed:14730666
database_cross_reference: PubMed:15350136
database_cross_reference: Unimod:1

Axiom
annotated source: monoacetylated residue
annotated property: has_exact_synonym
annotated target: Ac1Res
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: monoacetylated residue
annotated property: has_exact_synonym
annotated target: Acetylation (N terminus, N epsilon of Lysine, O of Serine) (Ac)
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: monoacetylated residue
annotated property: has_related_synonym
annotated target: Acetyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: monoacetylated residue
annotated property: has_related_synonym
annotated target: Acetylation
has_synonym_type: Description (full_name) from Unimod

thioester crosslinked residues
type: Class
subclass of: crosslinked residues
subclass of: MOD_02044
definition: A protein modification that crosslinks two residues by formation of a thioester bond between a cysteine thiol and either an alpha-carbonyl, as in S-(L-methionyl-L-cysteine), or a sidechain carbonyl, as in S-(L-isoglutamyl)-L-cysteine.
has_obo_namespace: PSI-MOD
id: MOD:00395
in_subset: PSI-MOD-slim

Axiom
annotated source: thioester crosslinked residues
annotated property: definition
annotated target: A protein modification that crosslinks two residues by formation of a thioester bond between a cysteine thiol and either an alpha-carbonyl, as in S-(L-methionyl-L-cysteine), or a sidechain carbonyl, as in S-(L-isoglutamyl)-L-cysteine.
database_cross_reference: PubMed:18688235

O-glycosylated residue
type: Class
subclass of: MOD_00693
definition: A protein modification that effectively replaces a residue hydrogen atom on an oxygen with a carbohydrate-like group through a glycosidic bond.
has_exact_synonym: OGlycoRes
has_obo_namespace: PSI-MOD
id: MOD:00396
in_subset: PSI-MOD-slim

Axiom
annotated source: O-glycosylated residue
annotated property: definition
annotated target: A protein modification that effectively replaces a residue hydrogen atom on an oxygen with a carbohydrate-like group through a glycosidic bond.
database_cross_reference: PubMed:18688235

Axiom
annotated source: O-glycosylated residue
annotated property: has_exact_synonym
annotated target: OGlycoRes
has_synonym_type: Short label curated by PSI-MOD

iodoacetamide derivatized residue
type: Class
subclass of: MOD_00848
definition: A protein modification that is produced by reaction with iodoacetamide, usually replacement of a reactive hydrogen with a methylcarboxamido group.
diff avg: 57.05
diff formula: C 2 H 3 N 1 O 1
diff mono: 57.021465
origin: X
source: artifact
database_cross_reference: Unimod:4
has_obo_namespace: PSI-MOD
has_related_synonym: Carbamidomethyl
has_related_synonym: Iodoacetamide derivative
id: MOD:00397
in_subset: PSI-MOD-slim

Axiom
annotated source: iodoacetamide derivatized residue
annotated property: definition
annotated target: A protein modification that is produced by reaction with iodoacetamide, usually replacement of a reactive hydrogen with a methylcarboxamido group.
database_cross_reference: PubMed:11327326
database_cross_reference: PubMed:11510821
database_cross_reference: PubMed:12422359
database_cross_reference: Unimod:4

Axiom
annotated source: iodoacetamide derivatized residue
annotated property: has_related_synonym
annotated target: Carbamidomethyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: iodoacetamide derivatized residue
annotated property: has_related_synonym
annotated target: Iodoacetamide derivative
has_synonym_type: Description (full_name) from Unimod

carbamoylated residue
type: Class
subclass of: MOD_01156
definition: A protein modification that effectively replaces a hydrogen atom with a carbamoyl (carboxamido) group. Replacement of an amino hydrogen produces a ureido group.
diff avg: 43.02
diff formula: C 1 H 1 N 1 O 1
diff mono: 43.005814
origin: X
database_cross_reference: Unimod:5
has_exact_synonym: Carbamylation
has_obo_namespace: PSI-MOD
has_related_synonym: Carbamyl
has_related_synonym: Carbamylation
id: MOD:00398
in_subset: PSI-MOD-slim
comment: This modification can be produced by hydrogen cyanate, either used as a reagent or as released by urea degradation in solution [JSG].

Axiom
annotated source: carbamoylated residue
annotated property: definition
annotated target: A protein modification that effectively replaces a hydrogen atom with a carbamoyl (carboxamido) group. Replacement of an amino hydrogen produces a ureido group.
database_cross_reference: DeltaMass:56
database_cross_reference: PubMed:10978403
database_cross_reference: PubMed:12203680
database_cross_reference: Unimod:5

Axiom
annotated source: carbamoylated residue
annotated property: has_exact_synonym
annotated target: Carbamylation
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: carbamoylated residue
annotated property: has_related_synonym
annotated target: Carbamyl
has_synonym_type: Interim label from Unimod

Axiom
annotated source: carbamoylated residue
annotated property: has_related_synonym
annotated target: Carbamylation
has_synonym_type: Description (full_name) from Unimod

iodoacetic acid derivatized residue
type: Class
subclass of: MOD_00848
definition: A protein modification that is produced by reaction with iodoacetic acid, usually replacement of a reactive hydrogen with a methylcarboxy group.
diff avg: 58.04
diff formula: C 2 H 2 O 2
diff mono: 58.005478
origin: X
source: artifact
database_cross_reference: Unimod:6
has_exact_synonym: Carboxymethyl (on Cysteine)
has_obo_namespace: PSI-MOD
has_related_synonym: Carboxymethyl
has_related_synonym: Iodoacetic acid derivative
id: MOD:00399
in_subset: PSI-MOD-slim
comment: From DeltaMass: Average Mass: 58 Abbreviation:CmC Average Mass Change:58 Notes:Cysteine reacts with iodoacetic acid to produce carboxymethyl cysteine.

Axiom
annotated source: iodoacetic acid derivatized residue
annotated property: definition
annotated target: A protein modification that is produced by reaction with iodoacetic acid, usually replacement of a reactive hydrogen with a methylcarboxy group.
database_cross_reference: DeltaMass:64
database_cross_reference: Unimod:6

Axiom
annotated source: iodoacetic acid derivatized residue
annotated property: has_exact_synonym
annotated target: Carboxymethyl (on Cysteine)
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: iodoacetic acid derivatized residue
annotated property: has_related_synonym
annotated target: Carboxymethyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: iodoacetic acid derivatized residue
annotated property: has_related_synonym
annotated target: Iodoacetic acid derivative
has_synonym_type: Description (full_name) from Unimod

deamidated residue
type: Class
subclass of: MOD_01156
definition: A protein modification that effectively replaces a carboxamido group with a carboxyl group, with both a gain of oxygen and loss of a nitrogen and a hydrogen.
diff avg: 0.98
diff formula: H -1 N -1 O 1
diff mono: 0.984016
origin: X
database_cross_reference: Unimod:7
has_exact_synonym: Deamidation of Asparagine and Glutamine to Aspartate and Glutamate
has_exact_synonym: dNRes
has_exact_synonym: deamidationkq
has_obo_namespace: PSI-MOD
has_related_synonym: Deamidated
has_related_synonym: Deamidation
id: MOD:00400
in_subset: PSI-MOD-slim
comment: From DeltaMass: References:Vish Katta.

Axiom
annotated source: deamidated residue
annotated property: definition
annotated target: A protein modification that effectively replaces a carboxamido group with a carboxyl group, with both a gain of oxygen and loss of a nitrogen and a hydrogen.
database_cross_reference: DeltaMass:32
database_cross_reference: OMSSA:4
database_cross_reference: Unimod:7

Axiom
annotated source: deamidated residue
annotated property: has_exact_synonym
annotated target: Deamidation of Asparagine and Glutamine to Aspartate and Glutamate
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: deamidated residue
annotated property: has_exact_synonym
annotated target: dNRes
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: deamidated residue
annotated property: has_exact_synonym
annotated target: deamidationkq
has_synonym_type: Short label from OMSSA

Axiom
annotated source: deamidated residue
annotated property: has_related_synonym
annotated target: Deamidated
has_synonym_type: Agreed label from MS community

Axiom
annotated source: deamidated residue
annotated property: has_related_synonym
annotated target: Deamidation
has_synonym_type: Description (full_name) from Unimod

Gygi ICAT(TM) d0 modified cysteine
type: Class
subclass of: MOD_01426
subclass of: MOD_01820
definition: A protein modification that is produced by formation of an adduct of a cysteine residue with the Gygi isotope-coded affinity tag d0 reagent.
diff avg: 486.63
diff formula: C 22 H 38 N 4 O 6 S 1
diff mono: 486.25122
formula: C 25 H 43 N 5 O 7 S 2
mass avg: 589.77
mass mono: 589.2604
origin: C
source: artifact
database_cross_reference: Unimod:8
has_obo_namespace: PSI-MOD
has_related_synonym: Gygi ICAT(TM) d0
has_related_synonym: ICAT-G
id: MOD:00401

Axiom
annotated source: Gygi ICAT(TM) d0 modified cysteine
annotated property: definition
annotated target: A protein modification that is produced by formation of an adduct of a cysteine residue with the Gygi isotope-coded affinity tag d0 reagent.
database_cross_reference: PubMed:10504701
database_cross_reference: Unimod:8#C

Axiom
annotated source: Gygi ICAT(TM) d0 modified cysteine
annotated property: has_related_synonym
annotated target: Gygi ICAT(TM) d0
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: Gygi ICAT(TM) d0 modified cysteine
annotated property: has_related_synonym
annotated target: ICAT-G
has_synonym_type: Agreed label from MS community

Gygi ICAT(TM) d8 modified cysteine
type: Class
subclass of: MOD_01431
subclass of: MOD_01820
definition: A protein modification that is produced by formation of an adduct of a cysteine residue with the Gygi isotope-coded affinity tag d8 reagent.
diff avg: 494.3
diff formula: C 22 (1)H 30 (2)H 8 N 4 O 6 S 1
diff mono: 494.30142
formula: C 25 (1)H 35 (2)H 8 N 5 O 7 S 2
mass avg: 597.31
mass mono: 597.3106
origin: C
source: artifact
database_cross_reference: Unimod:9
has_obo_namespace: PSI-MOD
has_related_synonym: Gygi ICAT(TM) d8
has_related_synonym: ICAT-G:2H(8)
id: MOD:00402

Axiom
annotated source: Gygi ICAT(TM) d8 modified cysteine
annotated property: definition
annotated target: A protein modification that is produced by formation of an adduct of a cysteine residue with the Gygi isotope-coded affinity tag d8 reagent.
database_cross_reference: PubMed:10504701
database_cross_reference: Unimod:9#C

Axiom
annotated source: Gygi ICAT(TM) d8 modified cysteine
annotated property: has_related_synonym
annotated target: Gygi ICAT(TM) d8
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: Gygi ICAT(TM) d8 modified cysteine
annotated property: has_related_synonym
annotated target: ICAT-G:2H(8)
has_synonym_type: Agreed label from MS community

homoserine
type: Class
subclass of: MOD_00913
definition: A protein modification that effectively converts an L-methionine residue to homoserine.
diff avg: -30.09
diff formula: C -1 H -2 O 1 S -1
diff mono: -29.992805
formula: C 4 H 7 N 1 O 2
mass avg: 101.1
mass mono: 101.047676
origin: M
source: artifact
term spec: C-term
database_cross_reference: Unimod:10
has_exact_synonym: Homoserine formed from Met by CNBr treatment
has_exact_synonym: ctermpephsem
has_obo_namespace: PSI-MOD
has_related_synonym: Homoserine
has_related_synonym: Met->Hse
id: MOD:00403
in_subset: PSI-MOD-slim
comment: Usually formed from methionine by reaction with cyanogen bromide, CNBr, which cleaves the peptide at the methionine carboxyl group and the following residue amino group.

Axiom
annotated source: homoserine
annotated property: definition
annotated target: A protein modification that effectively converts an L-methionine residue to homoserine.
database_cross_reference: DeltaMass:113
database_cross_reference: OMSSA:56
database_cross_reference: Unimod:10#M

Axiom
annotated source: homoserine
annotated property: has_exact_synonym
annotated target: Homoserine formed from Met by CNBr treatment
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: homoserine
annotated property: has_exact_synonym
annotated target: ctermpephsem
has_synonym_type: Short label from OMSSA

Axiom
annotated source: homoserine
annotated property: has_related_synonym
annotated target: Homoserine
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: homoserine
annotated property: has_related_synonym
annotated target: Met->Hse
has_synonym_type: Agreed label from MS community

homoserine lactone
type: Class
subclass of: cyclized residue
subclass of: MOD_00913
definition: A protein modification that effectively converts an L-methionine residue to homoserine lactone.
diff avg: -48.1
diff formula: C -1 H -4 S -1
diff mono: -48.003372
formula: C 4 H 5 N 1 O 1
mass avg: 83.09
mass mono: 83.03712
origin: M
source: artifact
term spec: C-term
database_cross_reference: Unimod:11
has_exact_synonym: ctermpephselactm
has_obo_namespace: PSI-MOD
has_related_synonym: Homoserine lactone
has_related_synonym: Met->Hsl
id: MOD:00404
in_subset: PSI-MOD-slim
comment: Usually formed from methionine by reaction with cyanogen bromide, CNBr, which cleaves the peptide at the methionine carboxyl group. Under acid conditions the homoserine dehydrates to form the cyclic lactone.

Axiom
annotated source: homoserine lactone
annotated property: definition
annotated target: A protein modification that effectively converts an L-methionine residue to homoserine lactone.
database_cross_reference: DeltaMass:90
database_cross_reference: OMSSA:57
database_cross_reference: Unimod:11#M

Axiom
annotated source: homoserine lactone
annotated property: has_exact_synonym
annotated target: ctermpephselactm
has_synonym_type: Short label from OMSSA

Axiom
annotated source: homoserine lactone
annotated property: has_related_synonym
annotated target: Homoserine lactone
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: homoserine lactone
annotated property: has_related_synonym
annotated target: Met->Hsl
has_synonym_type: Interim label from Unimod

Applied Biosystems original ICAT(TM) d8 modified cysteine
type: Class
subclass of: MOD_01431
subclass of: MOD_01820
definition: A protein modification that is produced by formation of an adduct of a cysteine residue with the Applied Biosystems original isotope-coded affinity tag d8 reagent.
diff avg: 450.28
diff formula: C 20 (1)H 26 (2)H 8 N 4 O 5 S 1
diff mono: 450.2752
formula: C 23 (1)H 31 (2)H 8 N 5 O 6 S 2
mass avg: 553.28
mass mono: 553.28436
origin: C
source: artifact
database_cross_reference: Unimod:12
has_obo_namespace: PSI-MOD
has_related_synonym: Applied Biosystems original ICAT(TM) d8
has_related_synonym: ICAT-D:2H(8)
id: MOD:00405
in_subset: PSI-MOD-slim

Axiom
annotated source: Applied Biosystems original ICAT(TM) d8 modified cysteine
annotated property: definition
annotated target: A protein modification that is produced by formation of an adduct of a cysteine residue with the Applied Biosystems original isotope-coded affinity tag d8 reagent.
database_cross_reference: Unimod:12#C

Axiom
annotated source: Applied Biosystems original ICAT(TM) d8 modified cysteine
annotated property: has_related_synonym
annotated target: Applied Biosystems original ICAT(TM) d8
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: Applied Biosystems original ICAT(TM) d8 modified cysteine
annotated property: has_related_synonym
annotated target: ICAT-D:2H(8)
has_synonym_type: Agreed label from MS community

Applied Biosystems original ICAT(TM) d0 modified cysteine
type: Class
subclass of: MOD_01426
subclass of: MOD_01820
definition: A protein modification that is produced by formation of an adduct of a cysteine residue with the Applied Biosystems original isotope-coded affinity tag d0 reagent.
diff avg: 442.22
diff formula: C 20 (1)H 34 N 4 O 5 S 1
diff mono: 442.225
formula: C 23 (1)H 39 N 5 O 6 S 2
mass avg: 545.23
mass mono: 545.2342
origin: C
source: artifact
database_cross_reference: Unimod:13
has_obo_namespace: PSI-MOD
has_related_synonym: Applied Biosystems original ICAT(TM) d0
has_related_synonym: ICAT-D
id: MOD:00406
in_subset: PSI-MOD-slim

Axiom
annotated source: Applied Biosystems original ICAT(TM) d0 modified cysteine
annotated property: definition
annotated target: A protein modification that is produced by formation of an adduct of a cysteine residue with the Applied Biosystems original isotope-coded affinity tag d0 reagent.
database_cross_reference: Unimod:13#C

Axiom
annotated source: Applied Biosystems original ICAT(TM) d0 modified cysteine
annotated property: has_related_synonym
annotated target: Applied Biosystems original ICAT(TM) d0
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: Applied Biosystems original ICAT(TM) d0 modified cysteine
annotated property: has_related_synonym
annotated target: ICAT-D
has_synonym_type: Agreed label from MS community

residue methyl ester
type: Class
definition: A protein modification that effectively replaces a carboxyl group with a carboxy methyl ester group. OBSOLETE because Unimod:14 merged with entry 34, remap to MOD:00599.
term replaced by: MOD:00599
diff avg: 14.03
diff formula: C 1 H 2
diff mono: 14.01565
origin: X
has_exact_synonym: ResOMe
has_obo_namespace: PSI-MOD
id: MOD:00407
deprecated: true

Axiom
annotated source: residue methyl ester
annotated property: definition
annotated target: A protein modification that effectively replaces a carboxyl group with a carboxy methyl ester group. OBSOLETE because Unimod:14 merged with entry 34, remap to MOD:00599.
database_cross_reference: PubMed:18688235

Axiom
annotated source: residue methyl ester
annotated property: has_exact_synonym
annotated target: ResOMe
has_synonym_type: Short label curated by PSI-MOD

mono N-acetylated residue
type: Class
subclass of: monoacetylated residue
subclass of: MOD_00670
definition: A protein modification that effectively replaces a residue amino or imino hydrogen with an acetyl group.
diff avg: 42.04
diff formula: C 2 H 2 O 1
diff mono: 42.010567
origin: X
has_exact_synonym: N-Acetyl
has_exact_synonym: N-Acetylation
has_exact_synonym: NAcRes
has_obo_namespace: PSI-MOD
id: MOD:00408
in_subset: PSI-MOD-slim

Axiom
annotated source: mono N-acetylated residue
annotated property: definition
annotated target: A protein modification that effectively replaces a residue amino or imino hydrogen with an acetyl group.
database_cross_reference: PubMed:18688235

Axiom
annotated source: mono N-acetylated residue
annotated property: has_exact_synonym
annotated target: N-Acetyl
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: mono N-acetylated residue
annotated property: has_exact_synonym
annotated target: N-Acetylation
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: mono N-acetylated residue
annotated property: has_exact_synonym
annotated target: NAcRes
has_synonym_type: Short label curated by PSI-MOD

N-formylated residue
type: Class
subclass of: formylated residue
subclass of: MOD_00670
definition: A protein modification that effectively replaces a residue amino group with a formamido group.
diff avg: 28.01
diff formula: C 1 O 1
diff mono: 27.994915
origin: X
has_exact_synonym: NFoRes
has_exact_synonym: ntermformyl
has_exact_synonym: ntermpepformyl
has_obo_namespace: PSI-MOD
has_related_synonym: Formyl
id: MOD:00409
in_subset: PSI-MOD-slim

Axiom
annotated source: N-formylated residue
annotated property: definition
annotated target: A protein modification that effectively replaces a residue amino group with a formamido group.
database_cross_reference: OMSSA:44
database_cross_reference: OMSSA:82

Axiom
annotated source: N-formylated residue
annotated property: has_exact_synonym
annotated target: NFoRes
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: N-formylated residue
annotated property: has_exact_synonym
annotated target: ntermformyl
has_synonym_type: Short label from OMSSA

Axiom
annotated source: N-formylated residue
annotated property: has_exact_synonym
annotated target: ntermpepformyl
has_synonym_type: Short label from OMSSA

Axiom
annotated source: N-formylated residue
annotated property: has_related_synonym
annotated target: Formyl
has_synonym_type: Agreed label from MS community

S-(N-isopropylcarboxamidomethyl)-L-cysteine
type: Class
subclass of: MOD_00848
subclass of: MOD_00905
definition: A protein modification that effectively converts an L-cysteine residue to S-(N-isopropylcarboxamidomethyl)-L-cysteine.
diff avg: 99.13
diff formula: C 5 H 9 N 1 O 1 S 0
diff mono: 99.06841
formula: C 8 H 14 N 2 O 2 S 1
mass avg: 202.27
mass mono: 202.0776
origin: C
source: artifact
database_cross_reference: Unimod:17
has_exact_synonym: nipcam
has_obo_namespace: PSI-MOD
has_related_synonym: N-isopropylcarboxamidomethyl
has_related_synonym: NIPCAM
id: MOD:00410

Axiom
annotated source: S-(N-isopropylcarboxamidomethyl)-L-cysteine
annotated property: definition
annotated target: A protein modification that effectively converts an L-cysteine residue to S-(N-isopropylcarboxamidomethyl)-L-cysteine.
database_cross_reference: OMSSA:84
database_cross_reference: PubMed:11465505
database_cross_reference: PubMed:8465942
database_cross_reference: Unimod:17#C

Axiom
annotated source: S-(N-isopropylcarboxamidomethyl)-L-cysteine
annotated property: has_exact_synonym
annotated target: nipcam
has_synonym_type: Short label from OMSSA

Axiom
annotated source: S-(N-isopropylcarboxamidomethyl)-L-cysteine
annotated property: has_related_synonym
annotated target: N-isopropylcarboxamidomethyl
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: S-(N-isopropylcarboxamidomethyl)-L-cysteine
annotated property: has_related_synonym
annotated target: NIPCAM
has_synonym_type: Agreed label from MS community

O18 label
type: Class
definition: modification from Unimod Isotopic label. OBSOLETE because Unimod:18 is now merged with entry 258 remap to MOD:00581 'single 018 label'
term replaced by: MOD:00581
diff avg: 2.0
diff formula: (16)O -1 (18)O 1
diff mono: 2.004246
origin: X
source: artifact
has_obo_namespace: PSI-MOD
id: MOD:00411
comment: A modification from Unimod:18
deprecated: true

Axiom
annotated source: O18 label
annotated property: definition
annotated target: modification from Unimod Isotopic label. OBSOLETE because Unimod:18 is now merged with entry 258 remap to MOD:00581 'single 018 label'
database_cross_reference: PubMed:18688235

oxidation
type: Class
definition: modification from Unimod artifact. OBSOLETE because Unimod entry 19 is now merged with Unimod 35 remap to MOD:00425 'monohydroxylated residue'.
term replaced by: MOD:00425
diff avg: 16.0
diff formula: O 1
diff mono: 15.994915
origin: X
has_obo_namespace: PSI-MOD
id: MOD:00412
deprecated: true

Axiom
annotated source: oxidation
annotated property: definition
annotated target: modification from Unimod artifact. OBSOLETE because Unimod entry 19 is now merged with Unimod 35 remap to MOD:00425 'monohydroxylated residue'.
database_cross_reference: PubMed:18688235

biotinyl-iodoacetamidyl-3,6-dioxaoctanediamine derivatized cysteine
type: Class
subclass of: MOD_00848
subclass of: MOD_00905
definition: A protein modification that is produced by reaction of a cysteine residue with biotinyl-iodoacetamidyl-3,6-dioxaoctanediamine.
diff avg: 414.52
diff formula: C 18 H 30 N 4 O 5 S 1
diff mono: 414.1937
formula: C 21 H 35 N 5 O 6 S 2
mass avg: 517.66
mass mono: 517.2029
origin: C
source: artifact
database_cross_reference: Unimod:20
has_obo_namespace: PSI-MOD
has_related_synonym: Biotinyl-iodoacetamidyl-3,6-dioxaoctanediamine
has_related_synonym: PEO-Iodoacetyl-LC-Biotin
id: MOD:00413

Axiom
annotated source: biotinyl-iodoacetamidyl-3,6-dioxaoctanediamine derivatized cysteine
annotated property: definition
annotated target: A protein modification that is produced by reaction of a cysteine residue with biotinyl-iodoacetamidyl-3,6-dioxaoctanediamine.
database_cross_reference: Unimod:20#C

Axiom
annotated source: biotinyl-iodoacetamidyl-3,6-dioxaoctanediamine derivatized cysteine
annotated property: has_related_synonym
annotated target: Biotinyl-iodoacetamidyl-3,6-dioxaoctanediamine
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: biotinyl-iodoacetamidyl-3,6-dioxaoctanediamine derivatized cysteine
annotated property: has_related_synonym
annotated target: PEO-Iodoacetyl-LC-Biotin
has_synonym_type: Interim label from Unimod

monomethylated L-arginine
type: Class
subclass of: monomethylated residue
subclass of: MOD_00658
definition: A protein modification that effectively replaces one hydrogen atom of an L-arginine residue with one methyl group.
diff avg: 14.03
diff formula: C 1 H 2 N 0 O 0
diff mono: 14.01565
formula: C 7 H 14 N 4 O 1
mass avg: 170.22
mass mono: 170.11676
origin: R
database_cross_reference: Unimod:34
has_exact_synonym: Me1Arg
has_exact_synonym: N-methyl Arginyl
has_exact_synonym: methylr
has_obo_namespace: PSI-MOD
has_related_synonym: Methyl
id: MOD:00414
in_subset: PSI-MOD-slim
comment: From DeltaMass: formula incorrect, N and O reversed

Axiom
annotated source: monomethylated L-arginine
annotated property: definition
annotated target: A protein modification that effectively replaces one hydrogen atom of an L-arginine residue with one methyl group.
database_cross_reference: DeltaMass:215
database_cross_reference: OMSSA:77
database_cross_reference: Unimod:34#R

Axiom
annotated source: monomethylated L-arginine
annotated property: has_exact_synonym
annotated target: Me1Arg
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: monomethylated L-arginine
annotated property: has_exact_synonym
annotated target: N-methyl Arginyl
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: monomethylated L-arginine
annotated property: has_exact_synonym
annotated target: methylr
has_synonym_type: Short label from OMSSA

Axiom
annotated source: monomethylated L-arginine
annotated property: has_related_synonym
annotated target: Methyl
has_synonym_type: Agreed label from MS community

phosphorylation without neutral loss
type: Class
definition: modification from Unimod - OBSOLETE because Unimod entry 22 is now merged with entry 21 remap to MOD:00696 'phosphorylated residue'.
term replaced by: MOD:00696
diff avg: 79.98
diff formula: H 1 O 3 P 1
diff mono: 79.96633
origin: X
source: artifact
has_obo_namespace: PSI-MOD
id: MOD:00415
deprecated: true

Axiom
annotated source: phosphorylation without neutral loss
annotated property: definition
annotated target: modification from Unimod - OBSOLETE because Unimod entry 22 is now merged with entry 21 remap to MOD:00696 'phosphorylated residue'.
database_cross_reference: PubMed:18688235

phosphorylation of an hydroxyl amino acid with prompt loss of phosphate
type: Class
subclass of: modified residue with neutral loss of phosphate
subclass of: MOD_00704
definition: A change resulting in an alteration of the measured molecular mass of a peptide or protein hydroxyl amino acid phosphorylated promptly followed by secondary loss of a neutral trihydrogen phosphate molecular fragment.
diff avg: -18.02
diff formula: H -2 O -1
diff mono: -18.010565
origin: X
source: artifact
database_cross_reference: Unimod:23
has_obo_namespace: PSI-MOD
has_related_synonym: Dehydrated
has_related_synonym: Dehydration
id: MOD:00416
in_subset: PSI-MOD-slim
comment: O4-phosphotyrosine does not lose phosphate by this mechanism. Unimod does not provide a citation for this particular modification [JSG].

Axiom
annotated source: phosphorylation of an hydroxyl amino acid with prompt loss of phosphate
annotated property: definition
annotated target: A change resulting in an alteration of the measured molecular mass of a peptide or protein hydroxyl amino acid phosphorylated promptly followed by secondary loss of a neutral trihydrogen phosphate molecular fragment.
database_cross_reference: Unimod:23

Axiom
annotated source: phosphorylation of an hydroxyl amino acid with prompt loss of phosphate
annotated property: has_related_synonym
annotated target: Dehydrated
has_synonym_type: Interim label from Unimod

Axiom
annotated source: phosphorylation of an hydroxyl amino acid with prompt loss of phosphate
annotated property: has_related_synonym
annotated target: Dehydration
has_synonym_type: Description (full_name) from Unimod

S-carboxamidoethyl-L-cysteine
type: Class
subclass of: MOD_00905
definition: A protein modification that effectively converts an L-cysteine residue to S-carboxamidoethyl-L-cysteine.
diff avg: 71.08
diff formula: C 3 H 5 N 1 O 1 S 0
diff mono: 71.03712
formula: C 6 H 10 N 2 O 2 S 1
mass avg: 174.22
mass mono: 174.0463
origin: C
source: artifact
database_cross_reference: Unimod:24
has_exact_synonym: PAM-Cys
has_exact_synonym: Propionamide or Acrylamide adduct
has_exact_synonym: S-(3-amino-3-oxopropyl)cysteine
has_exact_synonym: S-carbamoylethyl-L-cysteine
has_exact_synonym: S-propanamide-L-cysteine
has_exact_synonym: propionamidec
has_obo_namespace: PSI-MOD
has_related_synonym: Acrylamide adduct
has_related_synonym: Propionamide
id: MOD:00417
comment: From DeltaMass: References: Anal. Biochem. Vol 216 No. 1 p131 (citation not found) Notes: Residual acrylamide in SDS gels can label free cysteines to produce propionamido-Cys (also known as PAM-Cys)

Axiom
annotated source: S-carboxamidoethyl-L-cysteine
annotated property: definition
annotated target: A protein modification that effectively converts an L-cysteine residue to S-carboxamidoethyl-L-cysteine.
database_cross_reference: DeltaMass:72
database_cross_reference: OMSSA:5
database_cross_reference: PubMed:1481983
database_cross_reference: Unimod:24#C

Axiom
annotated source: S-carboxamidoethyl-L-cysteine
annotated property: has_exact_synonym
annotated target: PAM-Cys
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: S-carboxamidoethyl-L-cysteine
annotated property: has_exact_synonym
annotated target: Propionamide or Acrylamide adduct
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: S-carboxamidoethyl-L-cysteine
annotated property: has_exact_synonym
annotated target: S-(3-amino-3-oxopropyl)cysteine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: S-carboxamidoethyl-L-cysteine
annotated property: has_exact_synonym
annotated target: S-carbamoylethyl-L-cysteine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: S-carboxamidoethyl-L-cysteine
annotated property: has_exact_synonym
annotated target: S-propanamide-L-cysteine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: S-carboxamidoethyl-L-cysteine
annotated property: has_exact_synonym
annotated target: propionamidec
has_synonym_type: Short label from OMSSA

Axiom
annotated source: S-carboxamidoethyl-L-cysteine
annotated property: has_related_synonym
annotated target: Acrylamide adduct
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: S-carboxamidoethyl-L-cysteine
annotated property: has_related_synonym
annotated target: Propionamide
has_synonym_type: Agreed label from MS community

pyridylacetylated residue
type: Class
subclass of: acylated residue
subclass of: MOD_00848
definition: A protein modification that effectively replaces a hydrogen atom with an (pyridin-3-yl)acetyl group.
diff avg: 119.12
diff formula: C 7 H 5 N 1 O 1
diff mono: 119.03712
origin: X
source: artifact
database_cross_reference: Unimod:25
has_obo_namespace: PSI-MOD
has_related_synonym: Pyridylacetyl
has_related_synonym: pyridylacetyl
id: MOD:00418
comment: Produced by reaction with N-[(pyrid-3-yl)acetyl]oxy-succinimide [JSG].

Axiom
annotated source: pyridylacetylated residue
annotated property: definition
annotated target: A protein modification that effectively replaces a hydrogen atom with an (pyridin-3-yl)acetyl group.
database_cross_reference: PubMed:9276974
database_cross_reference: Unimod:25

Axiom
annotated source: pyridylacetylated residue
annotated property: has_related_synonym
annotated target: Pyridylacetyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: pyridylacetylated residue
annotated property: has_related_synonym
annotated target: pyridylacetyl
has_synonym_type: Description (full_name) from Unimod

(R)-5-oxo-1,4-tetrahydrothiazine-3-carboxylic acid
type: Class
subclass of: cyclized residue
subclass of: MOD_00905
definition: A protein modification that effectively converts an L-cysteine residue to (R)-5-oxo-1,4-tetrahydrothiazine-3-carboxylic acid.
diff avg: 40.02
diff formula: C 2 H 0 N 0 O 1 S 0
diff mono: 39.994915
formula: C 5 H 6 N 1 O 2 S 1
mass avg: 144.17
mass mono: 144.01192
origin: C
source: artifact
term spec: N-term
database_cross_reference: Unimod:26
has_exact_synonym: (R)-5-oxoperhydro-1,4-thiazine-3-carboxylic acid
has_exact_synonym: 5-oxothiomorpholine-3-carboxylic acid
has_exact_synonym: Otc
has_exact_synonym: S-carbamoylmethylcysteine cyclization (N-terminus)
has_obo_namespace: PSI-MOD
has_related_synonym: Pyro-carbamidomethyl
has_related_synonym: S-carbamoylmethylcysteine cyclization (N-terminus)
id: MOD:00419
comment: From DeltaMass: A secondary modification affecting peptides with S-carbamoylmethyl-L-cysteine (CamC) at the N-terminus. These exist in enzymatic digests of proteins that have been S-alkylated with iodoacetamide. Cyclization of N-terminal CamC gives a residue of (R)-5-oxoperhydro-1,4-thiazine-3-carboxylic acid. Peptides in which this has occurred become more hydrophobic, and lose 17 Da from the N-terminal residue.

Axiom
annotated source: (R)-5-oxo-1,4-tetrahydrothiazine-3-carboxylic acid
annotated property: definition
annotated target: A protein modification that effectively converts an L-cysteine residue to (R)-5-oxo-1,4-tetrahydrothiazine-3-carboxylic acid.
database_cross_reference: DeltaMass:336
database_cross_reference: PubMed:12643538
database_cross_reference: Unimod:26#C

Axiom
annotated source: (R)-5-oxo-1,4-tetrahydrothiazine-3-carboxylic acid
annotated property: has_exact_synonym
annotated target: (R)-5-oxoperhydro-1,4-thiazine-3-carboxylic acid
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: (R)-5-oxo-1,4-tetrahydrothiazine-3-carboxylic acid
annotated property: has_exact_synonym
annotated target: 5-oxothiomorpholine-3-carboxylic acid
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: (R)-5-oxo-1,4-tetrahydrothiazine-3-carboxylic acid
annotated property: has_exact_synonym
annotated target: Otc
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: (R)-5-oxo-1,4-tetrahydrothiazine-3-carboxylic acid
annotated property: has_exact_synonym
annotated target: S-carbamoylmethylcysteine cyclization (N-terminus)
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: (R)-5-oxo-1,4-tetrahydrothiazine-3-carboxylic acid
annotated property: has_related_synonym
annotated target: Pyro-carbamidomethyl
has_synonym_type: Interim label from Unimod

Axiom
annotated source: (R)-5-oxo-1,4-tetrahydrothiazine-3-carboxylic acid
annotated property: has_related_synonym
annotated target: S-carbamoylmethylcysteine cyclization (N-terminus)
has_synonym_type: Description (full_name) from Unimod

2-pyrrolidone-5-carboxylic acid (Glu)
type: Class
subclass of: MOD_00906
subclass of: MOD_01048
definition: A protein modification that effectively converts an L-glutamic acid residue to 2-pyrrolidone-5-carboxylic acid.
diff avg: -18.02
diff formula: C 0 H -2 N 0 O -1
diff mono: -18.010565
formula: C 5 H 6 N 1 O 2
mass avg: 112.11
mass mono: 112.039856
origin: E
source: artifact
term spec: N-term
database_cross_reference: Unimod:27
database_cross_reference: uniprot.ptm:PTM-0262
has_exact_synonym: (2S)-5-oxo-2-pyrrolidinecarboxylic acid
has_exact_synonym: 2-oxopyrrolidine-5-carboxylic acid
has_exact_synonym: 2-pyrrolidone-5-carboxylic acid
has_exact_synonym: 5-oxoproline
has_exact_synonym: 5-oxopyrrolidine-2-carboxylic acid
has_exact_synonym: 5-pyrrolidone-2-carboxylic acid
has_exact_synonym: MOD_RES Pyrrolidone carboxylic acid (Glu)
has_exact_synonym: PCA
has_exact_synonym: PyrGlu(Glu)
has_exact_synonym: Pyroglutamic Acid formed from Glutamic Acid
has_exact_synonym: ntermpeppyroe
has_exact_synonym: pyroglutamic acid
has_obo_namespace: PSI-MOD
has_related_synonym: Glu->pyro-Glu
has_related_synonym: Pyro-glu from E
id: MOD:00420
comment: From DeltaMass: References: The conversion of glutamic acid to pyroglutamic was reported for the beta-amyloid protein. Miller et al. Arch. Biochem. Biophy. (1993) 301, 41-52 [DeltaMass]. The modification in amyloid protein is probably an artifact of treatment with strong acid under anhydrous conditions. Peptides with N-terminal glutamic acid isolated from single cells of Aplysia neurons show partial conversion to pyroglutamic acid, possibly dependent on a temperature sensitive factor [JSG].

Axiom
annotated source: 2-pyrrolidone-5-carboxylic acid (Glu)
annotated property: definition
annotated target: A protein modification that effectively converts an L-glutamic acid residue to 2-pyrrolidone-5-carboxylic acid.
database_cross_reference: DeltaMass:16
database_cross_reference: OMSSA:109
database_cross_reference: PubMed:10214721
database_cross_reference: PubMed:1836357
database_cross_reference: PubMed:3473473
database_cross_reference: PubMed:8382902
database_cross_reference: RESID:AA0031#GLU
database_cross_reference: Unimod:27#E

Axiom
annotated source: 2-pyrrolidone-5-carboxylic acid (Glu)
annotated property: has_exact_synonym
annotated target: (2S)-5-oxo-2-pyrrolidinecarboxylic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: 2-pyrrolidone-5-carboxylic acid (Glu)
annotated property: has_exact_synonym
annotated target: 2-oxopyrrolidine-5-carboxylic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 2-pyrrolidone-5-carboxylic acid (Glu)
annotated property: has_exact_synonym
annotated target: 2-pyrrolidone-5-carboxylic acid
has_synonym_type: Name from RESID

Axiom
annotated source: 2-pyrrolidone-5-carboxylic acid (Glu)
annotated property: has_exact_synonym
annotated target: 5-oxoproline
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 2-pyrrolidone-5-carboxylic acid (Glu)
annotated property: has_exact_synonym
annotated target: 5-oxopyrrolidine-2-carboxylic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 2-pyrrolidone-5-carboxylic acid (Glu)
annotated property: has_exact_synonym
annotated target: 5-pyrrolidone-2-carboxylic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 2-pyrrolidone-5-carboxylic acid (Glu)
annotated property: has_exact_synonym
annotated target: MOD_RES Pyrrolidone carboxylic acid (Glu)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: 2-pyrrolidone-5-carboxylic acid (Glu)
annotated property: has_exact_synonym
annotated target: PCA
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 2-pyrrolidone-5-carboxylic acid (Glu)
annotated property: has_exact_synonym
annotated target: PyrGlu(Glu)
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: 2-pyrrolidone-5-carboxylic acid (Glu)
annotated property: has_exact_synonym
annotated target: Pyroglutamic Acid formed from Glutamic Acid
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: 2-pyrrolidone-5-carboxylic acid (Glu)
annotated property: has_exact_synonym
annotated target: ntermpeppyroe
has_synonym_type: Short label from OMSSA

Axiom
annotated source: 2-pyrrolidone-5-carboxylic acid (Glu)
annotated property: has_exact_synonym
annotated target: pyroglutamic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: 2-pyrrolidone-5-carboxylic acid (Glu)
annotated property: has_related_synonym
annotated target: Glu->pyro-Glu
has_synonym_type: Agreed label from MS community

Axiom
annotated source: 2-pyrrolidone-5-carboxylic acid (Glu)
annotated property: has_related_synonym
annotated target: Pyro-glu from E
has_synonym_type: Description (full_name) from Unimod

C-glycosylated residue
type: Class
subclass of: MOD_00693
definition: A protein modification that effectively replaces a residue hydrogen atom on a carbon with a carbohydrate-like group through a glycosidic bond.
has_exact_synonym: CGlycoRes
has_obo_namespace: PSI-MOD
id: MOD:00421
in_subset: PSI-MOD-slim

Axiom
annotated source: C-glycosylated residue
annotated property: definition
annotated target: A protein modification that effectively replaces a residue hydrogen atom on a carbon with a carbohydrate-like group through a glycosidic bond.
database_cross_reference: PubMed:18688235

Axiom
annotated source: C-glycosylated residue
annotated property: has_exact_synonym
annotated target: CGlycoRes
has_synonym_type: Short label curated by PSI-MOD

alpha-amino morpholine-2-acetylated residue
type: Class
subclass of: MOD_01696
subclass of: MOD_01813
definition: A protein modification that effectively replaces a residue alpha-amino- or alpha-imino-hydrogen with a morpholine-2-acetyl group.
diff avg: 127.14
diff formula: C 6 H 9 N 1 O 2
diff mono: 127.06333
origin: X
source: artifact
term spec: N-term
database_cross_reference: Unimod:29
has_exact_synonym: N-succinimidylmorpholine-2-acetate alpha-amino derivative
has_obo_namespace: PSI-MOD
has_related_synonym: N-Succinimidyl-2-morpholine acetate
has_related_synonym: SMA
id: MOD:00422
comment: The Unimod name "N-Succinimidyl-3-morpholine acetate" appears to have been a typographical error [JSG].

Axiom
annotated source: alpha-amino morpholine-2-acetylated residue
annotated property: definition
annotated target: A protein modification that effectively replaces a residue alpha-amino- or alpha-imino-hydrogen with a morpholine-2-acetyl group.
database_cross_reference: PubMed:10446193
database_cross_reference: Unimod:29#N-term

Axiom
annotated source: alpha-amino morpholine-2-acetylated residue
annotated property: has_exact_synonym
annotated target: N-succinimidylmorpholine-2-acetate alpha-amino derivative
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: alpha-amino morpholine-2-acetylated residue
annotated property: has_related_synonym
annotated target: N-Succinimidyl-2-morpholine acetate
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: alpha-amino morpholine-2-acetylated residue
annotated property: has_related_synonym
annotated target: SMA
has_synonym_type: Agreed label from MS community

monosodium salt
type: Class
subclass of: MOD_00747
definition: A protein modification that effectively substitutes one sodium atom for one hydrogen atom.
diff avg: 21.98
diff formula: H -1 Na 1
diff mono: 21.981943
origin: X
database_cross_reference: Unimod:30
has_exact_synonym: Na1Res
has_exact_synonym: Sodium
has_obo_namespace: PSI-MOD
has_related_synonym: Cation:Na
has_related_synonym: Sodium adduct
id: MOD:00423
in_subset: PSI-MOD-slim

Axiom
annotated source: monosodium salt
annotated property: definition
annotated target: A protein modification that effectively substitutes one sodium atom for one hydrogen atom.
database_cross_reference: DeltaMass:0
database_cross_reference: Unimod:30

Axiom
annotated source: monosodium salt
annotated property: has_exact_synonym
annotated target: Na1Res
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: monosodium salt
annotated property: has_exact_synonym
annotated target: Sodium
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: monosodium salt
annotated property: has_related_synonym
annotated target: Cation:Na
has_synonym_type: Agreed label from MS community

Axiom
annotated source: monosodium salt
annotated property: has_related_synonym
annotated target: Sodium adduct
has_synonym_type: Description (full_name) from Unimod

S-pyridylethyl-L-cysteine
type: Class
subclass of: MOD_00848
subclass of: MOD_00905
definition: A protein modification that effectively converts an L-cysteine residue to S-pyridylethyl-L-cysteine.
diff avg: 105.14
diff formula: C 7 H 7 N 1
diff mono: 105.057846
formula: C 10 H 12 N 2 O 1 S 1
mass avg: 208.28
mass mono: 208.06703
origin: C
source: artifact
database_cross_reference: Unimod:31
has_exact_synonym: PECys
has_exact_synonym: Pyridylethyl Cystenyl
has_exact_synonym: S-pyridinylethyl-L-cysteine
has_exact_synonym: spyridylethylc
has_exact_synonym: vinylpyridine derivatized cysteine residue
has_obo_namespace: PSI-MOD
has_related_synonym: Pyridylethyl
has_related_synonym: S-pyridylethylation
id: MOD:00424
comment: From DeltaMass: Formula:C10H12O2N1S1 (formula incorrect, N and O reversed) Monoisotopic Mass Change:208.067 Average Mass Change:208.286 (mass incorrect, aggregate not delta) References:PE Sciex

Axiom
annotated source: S-pyridylethyl-L-cysteine
annotated property: definition
annotated target: A protein modification that effectively converts an L-cysteine residue to S-pyridylethyl-L-cysteine.
database_cross_reference: DeltaMass:253
database_cross_reference: OMSSA:112
database_cross_reference: PubMed:11760118
database_cross_reference: PubMed:626389
database_cross_reference: PubMed:8297018
database_cross_reference: PubMed:8783016
database_cross_reference: Unimod:31#C

Axiom
annotated source: S-pyridylethyl-L-cysteine
annotated property: has_exact_synonym
annotated target: PECys
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: S-pyridylethyl-L-cysteine
annotated property: has_exact_synonym
annotated target: Pyridylethyl Cystenyl
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: S-pyridylethyl-L-cysteine
annotated property: has_exact_synonym
annotated target: S-pyridinylethyl-L-cysteine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: S-pyridylethyl-L-cysteine
annotated property: has_exact_synonym
annotated target: spyridylethylc
has_synonym_type: Short label from OMSSA

Axiom
annotated source: S-pyridylethyl-L-cysteine
annotated property: has_exact_synonym
annotated target: vinylpyridine derivatized cysteine residue
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: S-pyridylethyl-L-cysteine
annotated property: has_related_synonym
annotated target: Pyridylethyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: S-pyridylethyl-L-cysteine
annotated property: has_related_synonym
annotated target: S-pyridylethylation
has_synonym_type: Description (full_name) from Unimod

monohydroxylated residue
type: Class
subclass of: MOD_00677
definition: A protein modification that effectively replaces one hydrogen atom with a hydroxyl group.
diff avg: 16.0
diff formula: O 1
diff mono: 15.994915
origin: X
database_cross_reference: Unimod:35
has_exact_synonym: Hy1Res
has_obo_namespace: PSI-MOD
has_related_synonym: Oxidation
has_related_synonym: Oxidation or Hydroxylation
id: MOD:00425
in_subset: PSI-MOD-slim

Axiom
annotated source: monohydroxylated residue
annotated property: definition
annotated target: A protein modification that effectively replaces one hydrogen atom with a hydroxyl group.
database_cross_reference: Unimod:35

Axiom
annotated source: monohydroxylated residue
annotated property: has_exact_synonym
annotated target: Hy1Res
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: monohydroxylated residue
annotated property: has_related_synonym
annotated target: Oxidation
has_synonym_type: Interim label from Unimod

Axiom
annotated source: monohydroxylated residue
annotated property: has_related_synonym
annotated target: Oxidation or Hydroxylation
has_synonym_type: Description (full_name) from Unimod

S-glycosylated residue
type: Class
subclass of: MOD_00693
definition: A protein modification that effectively replaces a residue hydrogen atom on a sulfur with a carbohydrate-like group through a glycosidic bond.
has_exact_synonym: SGlycoRes
has_obo_namespace: PSI-MOD
id: MOD:00426

Axiom
annotated source: S-glycosylated residue
annotated property: definition
annotated target: A protein modification that effectively replaces a residue hydrogen atom on a sulfur with a carbohydrate-like group through a glycosidic bond.
database_cross_reference: PubMed:18688235

Axiom
annotated source: S-glycosylated residue
annotated property: has_exact_synonym
annotated target: SGlycoRes
has_synonym_type: Short label curated by PSI-MOD

methylated residue
type: Class
subclass of: alkylated residue
definition: A protein modification that effectively replaces a hydrogen atom with a methyl group.
has_exact_synonym: MeRes
has_exact_synonym: Methylation (N terminus, N epsilon of Lysine, O of Serine, Threonine or C terminus, N of Asparagine)
has_obo_namespace: PSI-MOD
id: MOD:00427
in_subset: PSI-MOD-slim
comment: From DeltaMass: Average Mass: 14 Average Mass Change:14 References:Methylation of Asparagine (found in phycobiliproteins) Klotz and Glazer (1987) J. Biol. Chem. 262; 17350-17355

Axiom
annotated source: methylated residue
annotated property: definition
annotated target: A protein modification that effectively replaces a hydrogen atom with a methyl group.
database_cross_reference: DeltaMass:36

Axiom
annotated source: methylated residue
annotated property: has_exact_synonym
annotated target: MeRes
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: methylated residue
annotated property: has_exact_synonym
annotated target: Methylation (N terminus, N epsilon of Lysine, O of Serine, Threonine or C terminus, N of Asparagine)
has_synonym_type: Label from MS DeltaMass

dihydroxylated residue
type: Class
subclass of: MOD_00677
definition: A protein modification that effectively replaces two hydrogen atoms with two hydroxyl groups.
diff avg: 32.0
diff formula: C 0 H 0 N 0 O 2
diff mono: 31.989828
origin: X
database_cross_reference: Unimod:425
has_exact_synonym: Hy2Res
has_obo_namespace: PSI-MOD
has_related_synonym: Dioxidation
has_related_synonym: dihydroxy
id: MOD:00428
in_subset: PSI-MOD-slim

Axiom
annotated source: dihydroxylated residue
annotated property: definition
annotated target: A protein modification that effectively replaces two hydrogen atoms with two hydroxyl groups.
database_cross_reference: PubMed:12686488
database_cross_reference: Unimod:425

Axiom
annotated source: dihydroxylated residue
annotated property: has_exact_synonym
annotated target: Hy2Res
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: dihydroxylated residue
annotated property: has_related_synonym
annotated target: Dioxidation
has_synonym_type: Agreed label from MS community

Axiom
annotated source: dihydroxylated residue
annotated property: has_related_synonym
annotated target: dihydroxy
has_synonym_type: Description (full_name) from Unimod

dimethylated residue
type: Class
subclass of: methylated residue
definition: A protein modification that effectively replaces two hydrogen atoms with two methyl groups.
diff avg: 28.05
diff formula: C 2 H 4
diff mono: 28.0313
origin: X
database_cross_reference: Unimod:36
has_exact_synonym: Me2Res
has_exact_synonym: N,N dimethylation (of Arginine or Lysine)
has_obo_namespace: PSI-MOD
has_related_synonym: Dimethyl
has_related_synonym: di-Methylation
id: MOD:00429
in_subset: PSI-MOD-slim
comment: For amino-terminal proline residues, dimethylation can effectively only be accomplished with a protonated imino group. This process accounts only for dimethylation and not protonation. The alternative Me2+Res process accounts for both protonation and dimethylation [JSG].

Axiom
annotated source: dimethylated residue
annotated property: definition
annotated target: A protein modification that effectively replaces two hydrogen atoms with two methyl groups.
database_cross_reference: DeltaMass:0
database_cross_reference: PubMed:12964758
database_cross_reference: PubMed:14570711
database_cross_reference: Unimod:36

Axiom
annotated source: dimethylated residue
annotated property: has_exact_synonym
annotated target: Me2Res
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: dimethylated residue
annotated property: has_exact_synonym
annotated target: N,N dimethylation (of Arginine or Lysine)
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: dimethylated residue
annotated property: has_related_synonym
annotated target: Dimethyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: dimethylated residue
annotated property: has_related_synonym
annotated target: di-Methylation
has_synonym_type: Description (full_name) from Unimod

trimethylated residue
type: Class
subclass of: methylated residue
definition: A protein modification that effectively replaces three hydrogen atoms with three methyl groups.
diff avg: 42.08
diff formula: C 3 H 6
diff mono: 42.04695
origin: X
database_cross_reference: Unimod:37
has_exact_synonym: Me3Res
has_obo_namespace: PSI-MOD
has_related_synonym: Trimethyl
has_related_synonym: tri-Methylation
id: MOD:00430
in_subset: PSI-MOD-slim
comment: For amino acids residues, amine trimethylation can effectively only be accomplished with an aminium, protonated primary amino, group. This process accounts only for trimethylation and not protonation. The alternative Me3+Res process accounts for both protonation and trimethylation.

Axiom
annotated source: trimethylated residue
annotated property: definition
annotated target: A protein modification that effectively replaces three hydrogen atoms with three methyl groups.
database_cross_reference: PubMed:12590383
database_cross_reference: PubMed:3145979
database_cross_reference: PubMed:4304194
database_cross_reference: PubMed:6778808
database_cross_reference: PubMed:7093227
database_cross_reference: PubMed:8453381
database_cross_reference: Unimod:37

Axiom
annotated source: trimethylated residue
annotated property: has_exact_synonym
annotated target: Me3Res
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: trimethylated residue
annotated property: has_related_synonym
annotated target: Trimethyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: trimethylated residue
annotated property: has_related_synonym
annotated target: tri-Methylation
has_synonym_type: Description (full_name) from Unimod

modified residue with a secondary neutral loss
type: Class
subclass of: MOD_01157
definition: Covalent modification of, or a change resulting in an alteration of the measured molecular mass of, a peptide or protein amino acid residue with a secondary loss of a neutral molecular fragment.
has_exact_synonym: NLModRes
has_obo_namespace: PSI-MOD
id: MOD:00431
in_subset: PSI-MOD-slim

Axiom
annotated source: modified residue with a secondary neutral loss
annotated property: definition
annotated target: Covalent modification of, or a change resulting in an alteration of the measured molecular mass of, a peptide or protein amino acid residue with a secondary loss of a neutral molecular fragment.
database_cross_reference: PubMed:18688235

Axiom
annotated source: modified residue with a secondary neutral loss
annotated property: has_exact_synonym
annotated target: NLModRes
has_synonym_type: Short label curated by PSI-MOD

modified residue with neutral loss of phosphate
type: Class
subclass of: modified residue with a secondary neutral loss
definition: Covalent modification of, or a change resulting in an alteration of the measured molecular mass of, a peptide or protein amino acid residue with a secondary loss of a neutral trihydrogen phosphate molecular fragment.
has_exact_synonym: dPhosModRes
has_obo_namespace: PSI-MOD
id: MOD:00432
in_subset: PSI-MOD-slim

Axiom
annotated source: modified residue with neutral loss of phosphate
annotated property: definition
annotated target: Covalent modification of, or a change resulting in an alteration of the measured molecular mass of, a peptide or protein amino acid residue with a secondary loss of a neutral trihydrogen phosphate molecular fragment.
database_cross_reference: PubMed:18688235

Axiom
annotated source: modified residue with neutral loss of phosphate
annotated property: has_exact_synonym
annotated target: dPhosModRes
has_synonym_type: Short label curated by PSI-MOD

monoglucosylated residue
type: Class
subclass of: MOD_00726
subclass of: MOD_00761
definition: A protein modification that effectively replaces a hydrogen atom with an glucose group through a glycosidic bond.
diff avg: 162.14
diff formula: C 6 H 10 N 0 O 5
diff mono: 162.05283
origin: X
has_exact_synonym: GlcRes
has_obo_namespace: PSI-MOD
id: MOD:00433
in_subset: PSI-MOD-slim

Axiom
annotated source: monoglucosylated residue
annotated property: definition
annotated target: A protein modification that effectively replaces a hydrogen atom with an glucose group through a glycosidic bond.
database_cross_reference: PubMed:18688235

Axiom
annotated source: monoglucosylated residue
annotated property: has_exact_synonym
annotated target: GlcRes
has_synonym_type: Short label curated by PSI-MOD

hexosylated residue
type: Class
subclass of: MOD_00693
definition: A protein modification that effectively replaces a hydrogen atom of an amino acid residue or of a modifying group with a hexose sugar group through a glycosidic bond.
origin: X
source: natural
database_cross_reference: Unimod:41
has_exact_synonym: Hex
has_exact_synonym: Hexoses (Fru, Gal, Glc, Man)
has_exact_synonym: O-Glycosyl-
has_obo_namespace: PSI-MOD
has_related_synonym: Hex
has_related_synonym: Hexose
id: MOD:00434
in_subset: PSI-MOD-slim
comment: From DeltaMass: Average Mass: 162 Formula:C6 H10 05 Monoisotopic Mass Change:162.053 Average Mass Change:162.143 References:PE Sciex.

Axiom
annotated source: hexosylated residue
annotated property: definition
annotated target: A protein modification that effectively replaces a hydrogen atom of an amino acid residue or of a modifying group with a hexose sugar group through a glycosidic bond.
database_cross_reference: DeltaMass:203
database_cross_reference: PubMed:15279557
database_cross_reference: Unimod:41

Axiom
annotated source: hexosylated residue
annotated property: has_exact_synonym
annotated target: Hex
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: hexosylated residue
annotated property: has_exact_synonym
annotated target: Hexoses (Fru, Gal, Glc, Man)
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: hexosylated residue
annotated property: has_exact_synonym
annotated target: O-Glycosyl-
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: hexosylated residue
annotated property: has_related_synonym
annotated target: Hex
has_synonym_type: Agreed label from MS community

Axiom
annotated source: hexosylated residue
annotated property: has_related_synonym
annotated target: Hexose
has_synonym_type: Description (full_name) from Unimod

O-phospho-L-serine with neutral loss of phosphate
type: Class
subclass of: MOD_01151
subclass of: Restriction
  on property: derives from
  some values from: O-phospho-L-serine
definition: Covalent modification of a peptide or protein amino acid phosphorylated serine with a secondary loss of a neutral trihydrogen phosphate molecular fragment.
diff avg: -97.99
diff formula: C 0 H -3 N 0 O -4 P -1
diff mono: -97.9769
formula: C 3 H 3 N 1 O 1
mass avg: 69.06
mass mono: 69.02146
origin: MOD:00046
source: artifact
has_exact_synonym: dPhosOPhosSer
has_obo_namespace: PSI-MOD
id: MOD:00435
in_subset: PSI-MOD-slim

Axiom
annotated source: O-phospho-L-serine with neutral loss of phosphate
annotated property: definition
annotated target: Covalent modification of a peptide or protein amino acid phosphorylated serine with a secondary loss of a neutral trihydrogen phosphate molecular fragment.
database_cross_reference: PubMed:18688235

Axiom
annotated source: O-phospho-L-serine with neutral loss of phosphate
annotated property: has_exact_synonym
annotated target: dPhosOPhosSer
has_synonym_type: Short label curated by PSI-MOD

N-acetylhexosaminylated residue
type: Class
subclass of: MOD_00693
definition: A protein modification that effectively replaces a hydrogen atom of an amino acid residue or of a modifying group with an N-acetylhexosamine group through a glycosidic bond.
diff avg: 203.19
diff formula: C 8 H 13 N 1 O 5
diff mono: 203.07938
origin: X
database_cross_reference: GNO:G29068FM
has_exact_synonym: HexNAc
has_obo_namespace: PSI-MOD
has_related_synonym: HexNAc
has_related_synonym: N-Acetylhexosamine
id: MOD:00436
in_subset: PSI-MOD-slim

Axiom
annotated source: N-acetylhexosaminylated residue
annotated property: definition
annotated target: A protein modification that effectively replaces a hydrogen atom of an amino acid residue or of a modifying group with an N-acetylhexosamine group through a glycosidic bond.
database_cross_reference: PubMed:18688235

Axiom
annotated source: N-acetylhexosaminylated residue
annotated property: has_exact_synonym
annotated target: HexNAc
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: N-acetylhexosaminylated residue
annotated property: has_related_synonym
annotated target: HexNAc
has_synonym_type: Agreed label from MS community

Axiom
annotated source: N-acetylhexosaminylated residue
annotated property: has_related_synonym
annotated target: N-Acetylhexosamine
has_synonym_type: Description (full_name) from Unimod

farnesylated residue
type: Class
subclass of: MOD_00703
definition: A protein modification that effectively replaces a hydrogen atom with a farnesyl group.
diff avg: 204.36
diff formula: C 15 H 24
diff mono: 204.1878
origin: X
source: natural
database_cross_reference: Unimod:44
has_exact_synonym: FarnRes
has_exact_synonym: Farnesylation
has_obo_namespace: PSI-MOD
has_related_synonym: Farnesyl
has_related_synonym: Farnesylation
id: MOD:00437
in_subset: PSI-MOD-slim
comment: From DeltaMass: Average Mass: 204

Axiom
annotated source: farnesylated residue
annotated property: definition
annotated target: A protein modification that effectively replaces a hydrogen atom with a farnesyl group.
database_cross_reference: DeltaMass:0
database_cross_reference: PubMed:15609361
database_cross_reference: Unimod:44

Axiom
annotated source: farnesylated residue
annotated property: has_exact_synonym
annotated target: FarnRes
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: farnesylated residue
annotated property: has_exact_synonym
annotated target: Farnesylation
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: farnesylated residue
annotated property: has_related_synonym
annotated target: Farnesyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: farnesylated residue
annotated property: has_related_synonym
annotated target: Farnesylation
has_synonym_type: Description (full_name) from Unimod

myristoylated residue
type: Class
subclass of: acylated residue
subclass of: MOD_01155
definition: A protein modification that effectively replaces a hydrogen atom with a myristoyl group.
diff avg: 210.36
diff formula: C 14 H 26 O 1
diff mono: 210.19836
origin: X
source: natural
database_cross_reference: Unimod:45
has_exact_synonym: C14:0 aliphatic acylated residue
has_exact_synonym: MyrRes
has_exact_synonym: Myristoylation
has_obo_namespace: PSI-MOD
has_related_synonym: Myristoyl
has_related_synonym: Myristoylation
id: MOD:00438
in_subset: PSI-MOD-slim
comment: From DeltaMass: Average Mass: 210

Axiom
annotated source: myristoylated residue
annotated property: definition
annotated target: A protein modification that effectively replaces a hydrogen atom with a myristoyl group.
database_cross_reference: DeltaMass:0
database_cross_reference: Unimod:45

Axiom
annotated source: myristoylated residue
annotated property: has_exact_synonym
annotated target: C14:0 aliphatic acylated residue
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: myristoylated residue
annotated property: has_exact_synonym
annotated target: MyrRes
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: myristoylated residue
annotated property: has_exact_synonym
annotated target: Myristoylation
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: myristoylated residue
annotated property: has_related_synonym
annotated target: Myristoyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: myristoylated residue
annotated property: has_related_synonym
annotated target: Myristoylation
has_synonym_type: Description (full_name) from Unimod

O-phospho-L-threonine with neutral loss of phosphate
type: Class
subclass of: MOD_00917
subclass of: MOD_01151
subclass of: Restriction
  on property: derives from
  some values from: O-phospho-L-threonine
definition: Covalent modification of a peptide or protein amino acid phosphorylated threonine with a secondary loss of a neutral trihydrogen phosphate molecular fragment.
diff avg: -97.99
diff formula: C 0 H -3 N 0 O -4 P -1
diff mono: -97.9769
formula: C 4 H 5 N 1 O 1
mass avg: 83.09
mass mono: 83.03712
origin: MOD:00047
source: artifact
has_exact_synonym: dPhosOPhosThr
has_obo_namespace: PSI-MOD
id: MOD:00439
in_subset: PSI-MOD-slim

Axiom
annotated source: O-phospho-L-threonine with neutral loss of phosphate
annotated property: definition
annotated target: Covalent modification of a peptide or protein amino acid phosphorylated threonine with a secondary loss of a neutral trihydrogen phosphate molecular fragment.
database_cross_reference: PubMed:18688235

Axiom
annotated source: O-phospho-L-threonine with neutral loss of phosphate
annotated property: has_exact_synonym
annotated target: dPhosOPhosThr
has_synonym_type: Short label curated by PSI-MOD

palmitoylated residue
type: Class
subclass of: acylated residue
subclass of: MOD_01155
definition: A protein modification that effectively replaces a hydrogen atom with a palmitoyl group.
diff avg: 238.41
diff formula: C 16 H 30 O 1
diff mono: 238.22966
origin: X
source: natural
has_exact_synonym: Hexadecanoylated residue
has_exact_synonym: Palmitoylation
has_exact_synonym: PamRes
has_obo_namespace: PSI-MOD
has_related_synonym: Palmitoyl
has_related_synonym: Palmitoylation
id: MOD:00440
in_subset: PSI-MOD-slim
comment: From DeltaMass: Average Mass: 238

Axiom
annotated source: palmitoylated residue
annotated property: definition
annotated target: A protein modification that effectively replaces a hydrogen atom with a palmitoyl group.
database_cross_reference: DeltaMass:0

Axiom
annotated source: palmitoylated residue
annotated property: has_exact_synonym
annotated target: Hexadecanoylated residue
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: palmitoylated residue
annotated property: has_exact_synonym
annotated target: Palmitoylation
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: palmitoylated residue
annotated property: has_exact_synonym
annotated target: PamRes
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: palmitoylated residue
annotated property: has_related_synonym
annotated target: Palmitoyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: palmitoylated residue
annotated property: has_related_synonym
annotated target: Palmitoylation
has_synonym_type: Description (full_name) from Unimod

geranylgeranylated residue
type: Class
subclass of: MOD_00703
definition: A protein modification that effectively replaces a hydrogen atom with a geranylgeranyl group.
diff avg: 272.48
diff formula: C 20 H 32
diff mono: 272.2504
origin: X
source: natural
database_cross_reference: Unimod:48
has_exact_synonym: Geranylgeranylation
has_exact_synonym: GergerRes
has_obo_namespace: PSI-MOD
has_related_synonym: Geranyl-geranyl
has_related_synonym: GeranylGeranyl
id: MOD:00441
in_subset: PSI-MOD-slim
comment: From DeltaMass: Average Mass: 272

Axiom
annotated source: geranylgeranylated residue
annotated property: definition
annotated target: A protein modification that effectively replaces a hydrogen atom with a geranylgeranyl group.
database_cross_reference: DeltaMass:0
database_cross_reference: PubMed:15609361
database_cross_reference: Unimod:48

Axiom
annotated source: geranylgeranylated residue
annotated property: has_exact_synonym
annotated target: Geranylgeranylation
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: geranylgeranylated residue
annotated property: has_exact_synonym
annotated target: GergerRes
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: geranylgeranylated residue
annotated property: has_related_synonym
annotated target: Geranyl-geranyl
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: geranylgeranylated residue
annotated property: has_related_synonym
annotated target: GeranylGeranyl
has_synonym_type: Agreed label from MS community

protonated omega-N,omega-N'-dimethylated L-arginine with secondary neutral loss of N,N'-carbodiimide
type: Class
subclass of: modified residue with a secondary neutral loss
subclass of: MOD_00902
definition: Covalent modification of a peptide or protein L-arginine residue to protonated omega-N,omega-N'-dimethylated L-arginine with secondary loss of an N,N'-carbodiimide molecular fragment.
diff avg: 42.04
diff formula: C 1 H 2 N 2 O 0
diff mono: 42.021797
formula: C 7 H 14 N 2 O 1
mass avg: 142.2
mass mono: 142.11061
origin: R
source: artifact
has_exact_synonym: dCDI-NNMe2+Arg
has_obo_namespace: PSI-MOD
id: MOD:00442

Axiom
annotated source: protonated omega-N,omega-N'-dimethylated L-arginine with secondary neutral loss of N,N'-carbodiimide
annotated property: definition
annotated target: Covalent modification of a peptide or protein L-arginine residue to protonated omega-N,omega-N'-dimethylated L-arginine with secondary loss of an N,N'-carbodiimide molecular fragment.
database_cross_reference: PubMed:15835918
database_cross_reference: PubMed:18688235

Axiom
annotated source: protonated omega-N,omega-N'-dimethylated L-arginine with secondary neutral loss of N,N'-carbodiimide
annotated property: has_exact_synonym
annotated target: dCDI-NNMe2+Arg
has_synonym_type: Short label curated by PSI-MOD

protonated omega-N,omega-N-dimethlyated L-arginine with secondary neutral loss of N,N-dimethylamine
type: Class
subclass of: modified residue with a secondary neutral loss
subclass of: MOD_00902
definition: Covalent modification of a peptide or protein L-arginine residue to protonated omega-N,omega-N-dimethlyated L-arginine with secondary neutral loss of an N,N-dimethylamine molecular fragment.
diff avg: 59.09
diff formula: C 2 H 7 N 2
diff mono: 59.060925
formula: C 6 H 10 N 3 O 1
mass avg: 140.17
mass mono: 140.08238
origin: R
source: artifact
has_exact_synonym: dDMA-NoMe2+Arg
has_obo_namespace: PSI-MOD
id: MOD:00443

Axiom
annotated source: protonated omega-N,omega-N-dimethlyated L-arginine with secondary neutral loss of N,N-dimethylamine
annotated property: definition
annotated target: Covalent modification of a peptide or protein L-arginine residue to protonated omega-N,omega-N-dimethlyated L-arginine with secondary neutral loss of an N,N-dimethylamine molecular fragment.
database_cross_reference: PubMed:15835918
database_cross_reference: PubMed:18688235

Axiom
annotated source: protonated omega-N,omega-N-dimethlyated L-arginine with secondary neutral loss of N,N-dimethylamine
annotated property: has_exact_synonym
annotated target: dDMA-NoMe2+Arg
has_synonym_type: Short label curated by PSI-MOD

N-palmitoyl-S-(sn-1-2,3-dipalmitoyl-glycerol)cysteine
type: Class
subclass of: MOD_00899
subclass of: Restriction
  on property: has functional parent
  some values from: MOD_01144
definition: A protein modification that effectively converts an L-cysteine residue to N-palmitoyl-S-(sn-1-2,3-dipalmitoyl-glycerol)cysteine.
diff avg: 789.32
diff formula: C 51 H 96 O 5
diff mono: 788.72577
formula: C 54 H 101 N 1 O 6 S 1
mass avg: 892.46
mass mono: 891.735
origin: C
source: natural
term spec: N-term
database_cross_reference: Unimod:51
has_exact_synonym: ntermpeptripalmitatec
has_obo_namespace: PSI-MOD
has_related_synonym: N-acyl diglyceride cysteine
has_related_synonym: Tripalmitate
id: MOD:00444

Axiom
annotated source: N-palmitoyl-S-(sn-1-2,3-dipalmitoyl-glycerol)cysteine
annotated property: definition
annotated target: A protein modification that effectively converts an L-cysteine residue to N-palmitoyl-S-(sn-1-2,3-dipalmitoyl-glycerol)cysteine.
database_cross_reference: OMSSA:118
database_cross_reference: PubMed:10356335
database_cross_reference: Unimod:51

Axiom
annotated source: N-palmitoyl-S-(sn-1-2,3-dipalmitoyl-glycerol)cysteine
annotated property: has_exact_synonym
annotated target: ntermpeptripalmitatec
has_synonym_type: Short label from OMSSA

Axiom
annotated source: N-palmitoyl-S-(sn-1-2,3-dipalmitoyl-glycerol)cysteine
annotated property: has_related_synonym
annotated target: N-acyl diglyceride cysteine
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: N-palmitoyl-S-(sn-1-2,3-dipalmitoyl-glycerol)cysteine
annotated property: has_related_synonym
annotated target: Tripalmitate
has_synonym_type: Agreed label from MS community

L-homoarginine
type: Class
subclass of: MOD_00848
subclass of: MOD_00912
definition: A protein modification that effectively converts an L-lysine residue to L-homoarginine, such as reaction with O-methylisourea.
diff avg: 42.04
diff formula: C 1 H 2 N 2
diff mono: 42.021797
formula: C 7 H 14 N 4 O 1
mass avg: 170.22
mass mono: 170.11676
origin: K
source: artifact
database_cross_reference: Unimod:52
has_exact_synonym: guanidinationk
has_obo_namespace: PSI-MOD
has_related_synonym: Guanidination
has_related_synonym: Guanidinyl
id: MOD:00445
in_subset: PSI-MOD-slim

Axiom
annotated source: L-homoarginine
annotated property: definition
annotated target: A protein modification that effectively converts an L-lysine residue to L-homoarginine, such as reaction with O-methylisourea.
database_cross_reference: OMSSA:53
database_cross_reference: PubMed:11078590
database_cross_reference: PubMed:11085420
database_cross_reference: PubMed:11821862
database_cross_reference: Unimod:52

Axiom
annotated source: L-homoarginine
annotated property: has_exact_synonym
annotated target: guanidinationk
has_synonym_type: Short label from OMSSA

Axiom
annotated source: L-homoarginine
annotated property: has_related_synonym
annotated target: Guanidination
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: L-homoarginine
annotated property: has_related_synonym
annotated target: Guanidinyl
has_synonym_type: Agreed label from MS community

4-hydroxynonenal adduct
type: Class
subclass of: MOD_01155
definition: A protein modification produced by formation of an adduct of a residue with 4-hydroxynonenal.
diff avg: 156.22
diff formula: C 9 H 16 O 2
diff mono: 156.11504
origin: X
source: artifact
database_cross_reference: Unimod:53
has_obo_namespace: PSI-MOD
has_related_synonym: 4-hydroxynonenal (HNE)
has_related_synonym: HNE
id: MOD:00446
comment: 4-hydroxynonenal, a toxic lipid aldehyde, is a product of the hydroperoxide beta-cleavage degradation of omega-6 polyunsaturated fatty acids, such as arachidonic and linoleic acids [JSG].

Axiom
annotated source: 4-hydroxynonenal adduct
annotated property: definition
annotated target: A protein modification produced by formation of an adduct of a residue with 4-hydroxynonenal.
database_cross_reference: PubMed:11327326
database_cross_reference: PubMed:15133838
database_cross_reference: Unimod:53

Axiom
annotated source: 4-hydroxynonenal adduct
annotated property: has_related_synonym
annotated target: 4-hydroxynonenal (HNE)
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: 4-hydroxynonenal adduct
annotated property: has_related_synonym
annotated target: HNE
has_synonym_type: Agreed label from MS community

N-glucuronylated residue
type: Class
subclass of: MOD_00764
definition: A protein modification that effectively results from forming an adduct with a glucuronic acid either through a carboxyl group amide or ester bond, or through C1-glycosylation.
diff avg: 176.12
diff formula: C 6 H 8 O 6
diff mono: 176.03209
origin: X
database_cross_reference: Unimod:54
has_exact_synonym: N-Glucuronyl (N terminus)
has_obo_namespace: PSI-MOD
has_related_synonym: Glucuronyl
has_related_synonym: N-glucuronylation
id: MOD:00447
in_subset: PSI-MOD-slim

Axiom
annotated source: N-glucuronylated residue
annotated property: definition
annotated target: A protein modification that effectively results from forming an adduct with a glucuronic acid either through a carboxyl group amide or ester bond, or through C1-glycosylation.
database_cross_reference: DeltaMass:0
database_cross_reference: PubMed:7398618
database_cross_reference: Unimod:54#N-term

Axiom
annotated source: N-glucuronylated residue
annotated property: has_exact_synonym
annotated target: N-Glucuronyl (N terminus)
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: N-glucuronylated residue
annotated property: has_related_synonym
annotated target: Glucuronyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: N-glucuronylated residue
annotated property: has_related_synonym
annotated target: N-glucuronylation
has_synonym_type: Description (full_name) from Unimod

mono-N-acetylaminoglucosylated residue
type: Class
subclass of: MOD_00733
subclass of: MOD_01673
definition: A protein modification that effectively replaces a hydrogen atom with an N-acetylaminoglucose group through a glycosidic bond.
diff avg: 203.19
diff formula: C 8 H 13 N 1 O 5
diff mono: 203.07938
origin: X
has_exact_synonym: GlcNAcRes
has_obo_namespace: PSI-MOD
has_related_synonym: HexNAc
id: MOD:00448
in_subset: PSI-MOD-slim

Axiom
annotated source: mono-N-acetylaminoglucosylated residue
annotated property: definition
annotated target: A protein modification that effectively replaces a hydrogen atom with an N-acetylaminoglucose group through a glycosidic bond.
database_cross_reference: PubMed:18688235

Axiom
annotated source: mono-N-acetylaminoglucosylated residue
annotated property: has_exact_synonym
annotated target: GlcNAcRes
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: mono-N-acetylaminoglucosylated residue
annotated property: has_related_synonym
annotated target: HexNAc
has_synonym_type: Agreed label from MS community

acetate labeling reagent (N-term) (heavy form, +3amu)
type: Class
subclass of: MOD_01431
definition: modification from Unimod Isotopic label
diff avg: 45.03
diff formula: C 2 (1)H -1 (2)H 3 O 1
diff mono: 45.029396
origin: X
source: artifact
term spec: N-term
database_cross_reference: Unimod:56
has_obo_namespace: PSI-MOD
has_related_synonym: Acetate labeling reagent (N-term & K) (heavy form, +3amu)
has_related_synonym: Acetyl:2H(3)
id: MOD:00449

Axiom
annotated source: acetate labeling reagent (N-term) (heavy form, +3amu)
annotated property: definition
annotated target: modification from Unimod Isotopic label
database_cross_reference: PubMed:11857757
database_cross_reference: PubMed:11999733
database_cross_reference: PubMed:12175151
database_cross_reference: Unimod:56

Axiom
annotated source: acetate labeling reagent (N-term) (heavy form, +3amu)
annotated property: has_related_synonym
annotated target: Acetate labeling reagent (N-term & K) (heavy form, +3amu)
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: acetate labeling reagent (N-term) (heavy form, +3amu)
annotated property: has_related_synonym
annotated target: Acetyl:2H(3)
has_synonym_type: Agreed label from MS community

acetate labeling reagent light form (K)
type: Class
definition: OBSOLETE because this isotopic label from Unimod entry 57 is deprecated
diff avg: 42.01
diff formula: C 2 (1)H 2 O 1
diff mono: 42.010567
origin: K
source: artifact
has_obo_namespace: PSI-MOD
id: MOD:00450
deprecated: true

Axiom
annotated source: acetate labeling reagent light form (K)
annotated property: definition
annotated target: OBSOLETE because this isotopic label from Unimod entry 57 is deprecated
database_cross_reference: PubMed:11857757

alpha-amino propanoylated residue
type: Class
subclass of: MOD_01894
definition: A protein modification that effectively replaces a residue alpha-amino- or alpha-imino-hydrogen with a propanoyl group.
diff avg: 56.06
diff formula: C 3 H 4 O 1
diff mono: 56.026215
origin: X
source: artifact
term spec: N-term
database_cross_reference: Unimod:58
has_obo_namespace: PSI-MOD
has_related_synonym: Propionate labeling reagent light form (N-term & K)
has_related_synonym: Propionyl
id: MOD:00451

Axiom
annotated source: alpha-amino propanoylated residue
annotated property: definition
annotated target: A protein modification that effectively replaces a residue alpha-amino- or alpha-imino-hydrogen with a propanoyl group.
database_cross_reference: PubMed:11857757
database_cross_reference: PubMed:11999733
database_cross_reference: PubMed:12175151
database_cross_reference: Unimod:58#N-term

Axiom
annotated source: alpha-amino propanoylated residue
annotated property: has_related_synonym
annotated target: Propionate labeling reagent light form (N-term & K)
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: alpha-amino propanoylated residue
annotated property: has_related_synonym
annotated target: Propionyl
has_synonym_type: Agreed label from MS community

alpha-amino 3x(13)C-labeled propanoylated residue
type: Class
subclass of: MOD_01426
subclass of: MOD_01428
subclass of: Restriction
  on property: derives from
  some values from: alpha-amino propanoylated residue
definition: A protein modification that effectively replaces a residue alpha-amino- or alpha-imino-hydrogen with a 3x(13)C-labeled propanoyl group.
diff avg: 59.04
diff formula: (13)C 3 H 4 O 1
diff mono: 59.036278
formula: (12)C 6 (13)C 3 H 16 N 2 O 2
mass avg: 187.13
mass mono: 187.13124
origin: X
source: artifact
term spec: N-term
database_cross_reference: Unimod:59
has_obo_namespace: PSI-MOD
has_related_synonym: Propionate labeling reagent heavy form (+3amu), N-term & K
has_related_synonym: Propionyl:13C(3)
id: MOD:00452

Axiom
annotated source: alpha-amino 3x(13)C-labeled propanoylated residue
annotated property: definition
annotated target: A protein modification that effectively replaces a residue alpha-amino- or alpha-imino-hydrogen with a 3x(13)C-labeled propanoyl group.
database_cross_reference: PubMed:11857757
database_cross_reference: PubMed:11999733
database_cross_reference: PubMed:12175151
database_cross_reference: Unimod:59#N-term

Axiom
annotated source: alpha-amino 3x(13)C-labeled propanoylated residue
annotated property: has_related_synonym
annotated target: Propionate labeling reagent heavy form (+3amu), N-term & K
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: alpha-amino 3x(13)C-labeled propanoylated residue
annotated property: has_related_synonym
annotated target: Propionyl:13C(3)
has_synonym_type: Agreed label from MS community

quaternary amine labeling reagent light form (N-term & K)
type: Class
subclass of: MOD_01426
definition: A protein modification that effectively replaces a residue alpha-amino- or alpha-imino-hydrogen with a quaternary amine reagent light form group.
diff avg: 127.19
diff formula: C 7 H 13 N 1 O 1
diff mono: 127.09972
origin: X
source: artifact
database_cross_reference: Unimod:60
has_obo_namespace: PSI-MOD
has_related_synonym: GIST-Quat
has_related_synonym: Quaternary amine labeling reagent light form (N-term & K)
id: MOD:00453

Axiom
annotated source: quaternary amine labeling reagent light form (N-term & K)
annotated property: definition
annotated target: A protein modification that effectively replaces a residue alpha-amino- or alpha-imino-hydrogen with a quaternary amine reagent light form group.
database_cross_reference: PubMed:11857757
database_cross_reference: Unimod:60

Axiom
annotated source: quaternary amine labeling reagent light form (N-term & K)
annotated property: has_related_synonym
annotated target: GIST-Quat
has_synonym_type: Agreed label from MS community

Axiom
annotated source: quaternary amine labeling reagent light form (N-term & K)
annotated property: has_related_synonym
annotated target: Quaternary amine labeling reagent light form (N-term & K)
has_synonym_type: Description (full_name) from Unimod

quaternary amine labeling reagent heavy form (+3amu) (N-term & K)
type: Class
subclass of: MOD_01426
definition: A protein modification that effectively replaces a residue alpha-amino- or alpha-imino-hydrogen with a quaternary amine reagent heavy (+3amu) form group.
diff avg: 130.12
diff formula: C 7 (1)H 10 (2)H 3 N 1 O 1
diff mono: 130.11855
formula: C 13 (1)H 22 (2)H 3 N 3 O 2
mass avg: 258.21
mass mono: 258.2135
origin: X
source: artifact
database_cross_reference: Unimod:61
has_obo_namespace: PSI-MOD
has_related_synonym: GIST-Quat:2H(3)
has_related_synonym: Quaternary amine labeling reagent heavy (+3amu) form, N-term & K
id: MOD:00454

Axiom
annotated source: quaternary amine labeling reagent heavy form (+3amu) (N-term & K)
annotated property: definition
annotated target: A protein modification that effectively replaces a residue alpha-amino- or alpha-imino-hydrogen with a quaternary amine reagent heavy (+3amu) form group.
database_cross_reference: PubMed:11857757
database_cross_reference: Unimod:61

Axiom
annotated source: quaternary amine labeling reagent heavy form (+3amu) (N-term & K)
annotated property: has_related_synonym
annotated target: GIST-Quat:2H(3)
has_synonym_type: Agreed label from MS community

Axiom
annotated source: quaternary amine labeling reagent heavy form (+3amu) (N-term & K)
annotated property: has_related_synonym
annotated target: Quaternary amine labeling reagent heavy (+3amu) form, N-term & K
has_synonym_type: Description (full_name) from Unimod

quaternary amine labeling reagent heavy form (+6amu) (N-term & K)
type: Class
subclass of: MOD_01426
definition: A protein modification that effectively replaces a residue alpha-amino- or alpha-imino-hydrogen with a quaternary amine reagent heavy (+6amu) form group.
diff avg: 133.14
diff formula: C 7 H 7 (2)H 6 N 1 O 1
diff mono: 133.13737
origin: X
source: artifact
database_cross_reference: Unimod:62
has_obo_namespace: PSI-MOD
has_related_synonym: GIST-Quat:2H(6)
has_related_synonym: Quaternary amine labeling reagent heavy form (+6amu), N-term & K
id: MOD:00455

Axiom
annotated source: quaternary amine labeling reagent heavy form (+6amu) (N-term & K)
annotated property: definition
annotated target: A protein modification that effectively replaces a residue alpha-amino- or alpha-imino-hydrogen with a quaternary amine reagent heavy (+6amu) form group.
database_cross_reference: PubMed:11857757
database_cross_reference: Unimod:62

Axiom
annotated source: quaternary amine labeling reagent heavy form (+6amu) (N-term & K)
annotated property: has_related_synonym
annotated target: GIST-Quat:2H(6)
has_synonym_type: Agreed label from MS community

Axiom
annotated source: quaternary amine labeling reagent heavy form (+6amu) (N-term & K)
annotated property: has_related_synonym
annotated target: Quaternary amine labeling reagent heavy form (+6amu), N-term & K
has_synonym_type: Description (full_name) from Unimod

quaternary amine labeling reagent heavy form (+9amu) (N-term & K)
type: Class
subclass of: MOD_01426
definition: A protein modification that effectively replaces a residue alpha-amino- or alpha-imino-hydrogen with a quaternary amine reagent heavy (+9amu) form group.
diff avg: 136.16
diff formula: C 7 (1)H 4 (2)H 9 N 1 O 1
diff mono: 136.1562
formula: C 13 (1)H 16 (2)H 9 N 3 O 2
mass avg: 264.25
mass mono: 264.25116
origin: X
source: artifact
database_cross_reference: Unimod:63
has_obo_namespace: PSI-MOD
has_related_synonym: GIST-Quat:2H(9)
has_related_synonym: Quaternary amine labeling reagent heavy form (+9amu), N-term & K
id: MOD:00456

Axiom
annotated source: quaternary amine labeling reagent heavy form (+9amu) (N-term & K)
annotated property: definition
annotated target: A protein modification that effectively replaces a residue alpha-amino- or alpha-imino-hydrogen with a quaternary amine reagent heavy (+9amu) form group.
database_cross_reference: PubMed:11857757
database_cross_reference: Unimod:63

Axiom
annotated source: quaternary amine labeling reagent heavy form (+9amu) (N-term & K)
annotated property: has_related_synonym
annotated target: GIST-Quat:2H(9)
has_synonym_type: Agreed label from MS community

Axiom
annotated source: quaternary amine labeling reagent heavy form (+9amu) (N-term & K)
annotated property: has_related_synonym
annotated target: Quaternary amine labeling reagent heavy form (+9amu), N-term & K
has_synonym_type: Description (full_name) from Unimod

4x(12)C, 4x(1)H labeled alpha-amino succinylated residue
type: Class
subclass of: MOD_01426
subclass of: MOD_01696
subclass of: Restriction
  on property: derives from
  some values from: MOD_01029
definition: A protein modification that effectively replaces a residue alpha-amino- or alpha-imino-hydrogen with a light succinyl group.
diff avg: 100.03
diff formula: (12)C 4 (1)H 4 O 3
diff mono: 100.016045
origin: X
source: natural
term spec: N-term
database_cross_reference: Unimod:64
has_obo_namespace: PSI-MOD
has_related_synonym: Succinic anhydride labeling reagent light form (N-term)
has_related_synonym: Succinyl
id: MOD:00457

Axiom
annotated source: 4x(12)C, 4x(1)H labeled alpha-amino succinylated residue
annotated property: definition
annotated target: A protein modification that effectively replaces a residue alpha-amino- or alpha-imino-hydrogen with a light succinyl group.
database_cross_reference: PubMed:11857757
database_cross_reference: PubMed:12175151
database_cross_reference: Unimod:64#N-term

Axiom
annotated source: 4x(12)C, 4x(1)H labeled alpha-amino succinylated residue
annotated property: has_related_synonym
annotated target: Succinic anhydride labeling reagent light form (N-term)
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: 4x(12)C, 4x(1)H labeled alpha-amino succinylated residue
annotated property: has_related_synonym
annotated target: Succinyl
has_synonym_type: Agreed label from MS community

4x(2)H labeled alpha-amino succinylated residue
type: Class
subclass of: MOD_01426
subclass of: MOD_01696
subclass of: Restriction
  on property: derives from
  some values from: MOD_01029
definition: A protein modification that effectively replaces a residue alpha-amino- or alpha-imino-hydrogen with a 4x(2)H labeled succinyl group.
diff avg: 104.04
diff formula: C 4 (2)H 4 O 3
diff mono: 104.04115
origin: X
source: artifact
term spec: N-term
database_cross_reference: Unimod:65
has_obo_namespace: PSI-MOD
has_related_synonym: Succinic anhydride labeling reagent, heavy form (+4amu, 4H2), N-term
has_related_synonym: Succinyl:2H(4)
id: MOD:00458

Axiom
annotated source: 4x(2)H labeled alpha-amino succinylated residue
annotated property: definition
annotated target: A protein modification that effectively replaces a residue alpha-amino- or alpha-imino-hydrogen with a 4x(2)H labeled succinyl group.
database_cross_reference: PubMed:11857757
database_cross_reference: PubMed:12175151
database_cross_reference: Unimod:65#N-term

Axiom
annotated source: 4x(2)H labeled alpha-amino succinylated residue
annotated property: has_related_synonym
annotated target: Succinic anhydride labeling reagent, heavy form (+4amu, 4H2), N-term
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: 4x(2)H labeled alpha-amino succinylated residue
annotated property: has_related_synonym
annotated target: Succinyl:2H(4)
has_synonym_type: Agreed label from MS community

4x(13)C labeled alpha-amino succinylated residue
type: Class
subclass of: MOD_01426
subclass of: MOD_01428
subclass of: MOD_01696
subclass of: Restriction
  on property: derives from
  some values from: MOD_01029
definition: A protein modification that effectively replaces a residue alpha-amino- or alpha-imino-hydrogen with a 4x(13)C labeled succinyl group.
diff avg: 104.03
diff formula: (13)C 4 H 4 O 3
diff mono: 104.029465
origin: X
database_cross_reference: Unimod:66
has_obo_namespace: PSI-MOD
has_related_synonym: Succinic anhydride labeling reagent, heavy form (+4amu, 4C13), N-term & K
has_related_synonym: Succinyl:13C(4)
id: MOD:00459

Axiom
annotated source: 4x(13)C labeled alpha-amino succinylated residue
annotated property: definition
annotated target: A protein modification that effectively replaces a residue alpha-amino- or alpha-imino-hydrogen with a 4x(13)C labeled succinyl group.
database_cross_reference: PubMed:11857757
database_cross_reference: PubMed:12175151
database_cross_reference: Unimod:66#N-term

Axiom
annotated source: 4x(13)C labeled alpha-amino succinylated residue
annotated property: has_related_synonym
annotated target: Succinic anhydride labeling reagent, heavy form (+4amu, 4C13), N-term & K
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: 4x(13)C labeled alpha-amino succinylated residue
annotated property: has_related_synonym
annotated target: Succinyl:13C(4)
has_synonym_type: Agreed label from MS community

L-cysteic acid (L-cysteine sulfonic acid)
type: Class
subclass of: MOD_00708
definition: A protein modification that effectively trioxygenates an L-cysteine residue to L-cysteine sulfonic acid.
diff avg: 48.0
diff formula: C 0 H 0 N 0 O 3 S 0
diff mono: 47.984745
formula: C 3 H 5 N 1 O 4 S 1
mass avg: 151.14
mass mono: 150.99393
origin: C
source: artifact
database_cross_reference: Unimod:345
database_cross_reference: uniprot.ptm:PTM-0634
has_exact_synonym: (2R)-2-amino-3-sulfopropanoic acid
has_exact_synonym: 2-amino-2-carboxyethanesulfonic acid
has_exact_synonym: 2-azanyl-3-sulfopropanoic acid
has_exact_synonym: 3-sulfoalanine
has_exact_synonym: Cya
has_exact_synonym: CysO3H
has_exact_synonym: Cysteic acid, oxidation of cysteine
has_exact_synonym: L-cysteine sulfonic acid
has_exact_synonym: MOD_RES Cysteine sulfonic acid (-SO3H)
has_exact_synonym: cysteic acid
has_exact_synonym: cysteicacidc
has_exact_synonym: cysteine sulphonic acid
has_obo_namespace: PSI-MOD
has_related_synonym: Trioxidation
has_related_synonym: cysteine oxidation to cysteic acid
id: MOD:00460
in_subset: PSI-MOD-slim
comment: From DeltaMass: Notes:Treatment of cysteine by strongly oxidising reagents such as performic acid results in the complete oxidation of the sulphur atom. Such treatment is often carried out prior to amino acid analysis as the resulting cysteic acid is then resistant to acid degradation during the hydrolysis procedure.

Axiom
annotated source: L-cysteic acid (L-cysteine sulfonic acid)
annotated property: definition
annotated target: A protein modification that effectively trioxygenates an L-cysteine residue to L-cysteine sulfonic acid.
database_cross_reference: ChEBI:17285
database_cross_reference: DeltaMass:334
database_cross_reference: OMSSA:34
database_cross_reference: PubMed:14678012
database_cross_reference: PubMed:18306178
database_cross_reference: PubMed:19522542
database_cross_reference: PubMed:9252331
database_cross_reference: RESID:AA0556
database_cross_reference: Unimod:345#C

Axiom
annotated source: L-cysteic acid (L-cysteine sulfonic acid)
annotated property: has_exact_synonym
annotated target: (2R)-2-amino-3-sulfopropanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: L-cysteic acid (L-cysteine sulfonic acid)
annotated property: has_exact_synonym
annotated target: 2-amino-2-carboxyethanesulfonic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteic acid (L-cysteine sulfonic acid)
annotated property: has_exact_synonym
annotated target: 2-azanyl-3-sulfopropanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteic acid (L-cysteine sulfonic acid)
annotated property: has_exact_synonym
annotated target: 3-sulfoalanine
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteic acid (L-cysteine sulfonic acid)
annotated property: has_exact_synonym
annotated target: Cya
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: L-cysteic acid (L-cysteine sulfonic acid)
annotated property: has_exact_synonym
annotated target: CysO3H
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-cysteic acid (L-cysteine sulfonic acid)
annotated property: has_exact_synonym
annotated target: Cysteic acid, oxidation of cysteine
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: L-cysteic acid (L-cysteine sulfonic acid)
annotated property: has_exact_synonym
annotated target: L-cysteine sulfonic acid
has_synonym_type: Name from RESID

Axiom
annotated source: L-cysteic acid (L-cysteine sulfonic acid)
annotated property: has_exact_synonym
annotated target: MOD_RES Cysteine sulfonic acid (-SO3H)
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: L-cysteic acid (L-cysteine sulfonic acid)
annotated property: has_exact_synonym
annotated target: cysteic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteic acid (L-cysteine sulfonic acid)
annotated property: has_exact_synonym
annotated target: cysteicacidc
has_synonym_type: Short label from OMSSA

Axiom
annotated source: L-cysteic acid (L-cysteine sulfonic acid)
annotated property: has_exact_synonym
annotated target: cysteine sulphonic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: L-cysteic acid (L-cysteine sulfonic acid)
annotated property: has_related_synonym
annotated target: Trioxidation
has_synonym_type: Agreed label from MS community

Axiom
annotated source: L-cysteic acid (L-cysteine sulfonic acid)
annotated property: has_related_synonym
annotated target: cysteine oxidation to cysteic acid
has_synonym_type: Description (full_name) from Unimod

nitrated residue
type: Class
subclass of: MOD_00848
definition: A protein modification that effectively substitutes a nitrite (NO2) group for a hydrogen atom.
diff avg: 45.0
diff formula: H -1 N 1 O 2
diff mono: 44.985077
origin: X
database_cross_reference: Unimod:354
has_exact_synonym: Nitro (NO2)
has_obo_namespace: PSI-MOD
has_related_synonym: Nitro
has_related_synonym: Oxidation to nitro
id: MOD:00461
in_subset: PSI-MOD-slim
comment: Note, this is often misrepresented as the introduction of a nitrate (NO3) group [JSG].

Axiom
annotated source: nitrated residue
annotated property: definition
annotated target: A protein modification that effectively substitutes a nitrite (NO2) group for a hydrogen atom.
database_cross_reference: DeltaMass:0
database_cross_reference: PubMed:8839040
database_cross_reference: PubMed:9252331
database_cross_reference: Unimod:354

Axiom
annotated source: nitrated residue
annotated property: has_exact_synonym
annotated target: Nitro (NO2)
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: nitrated residue
annotated property: has_related_synonym
annotated target: Nitro
has_synonym_type: Agreed label from MS community

Axiom
annotated source: nitrated residue
annotated property: has_related_synonym
annotated target: Oxidation to nitro
has_synonym_type: Description (full_name) from Unimod

L-kynurenine
type: Class
subclass of: MOD_00918
definition: A protein modification that effectively converts an L-tryptophan residue to L-kynurenine.
diff avg: 3.99
diff formula: C -1 O 1
diff mono: 3.994915
formula: C 10 H 10 N 2 O 2
mass avg: 190.2
mass mono: 190.07423
origin: W
source: artifact
database_cross_reference: Unimod:351
has_exact_synonym: (2S)-2-amino-4-(2-aminophenyl)-4-oxo-butanoic acid
has_exact_synonym: kynureninw
has_obo_namespace: PSI-MOD
has_related_synonym: Trp->Kynurenin
has_related_synonym: tryptophan oxidation to kynurenin
id: MOD:00462
in_subset: PSI-MOD-slim

Axiom
annotated source: L-kynurenine
annotated property: definition
annotated target: A protein modification that effectively converts an L-tryptophan residue to L-kynurenine.
database_cross_reference: DeltaMass:357
database_cross_reference: OMSSA:66
database_cross_reference: PubMed:11029593
database_cross_reference: PubMed:9252331
database_cross_reference: Unimod:351#W

Axiom
annotated source: L-kynurenine
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-4-(2-aminophenyl)-4-oxo-butanoic acid
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: L-kynurenine
annotated property: has_exact_synonym
annotated target: kynureninw
has_synonym_type: Short label from OMSSA

Axiom
annotated source: L-kynurenine
annotated property: has_related_synonym
annotated target: Trp->Kynurenin
has_synonym_type: Agreed label from MS community

Axiom
annotated source: L-kynurenine
annotated property: has_related_synonym
annotated target: tryptophan oxidation to kynurenin
has_synonym_type: Description (full_name) from Unimod

3'-hydroxy-L-kynurenine
type: Class
subclass of: MOD_00679
subclass of: MOD_00918
definition: A protein modification that effectively converts an L-tryptophan residue to 3'-hydroxy-L-kynurenine.
diff avg: 19.99
diff formula: C -1 O 2
diff mono: 19.989828
formula: C 10 H 10 N 2 O 3
mass avg: 206.2
mass mono: 206.06914
origin: W
source: artifact
database_cross_reference: Unimod:350
has_exact_synonym: hydroxykynureninw
has_obo_namespace: PSI-MOD
has_related_synonym: Trp->Hydroxykynurenin
has_related_synonym: tryptophan oxidation to hydroxykynurenin
id: MOD:00463
in_subset: PSI-MOD-slim

Axiom
annotated source: 3'-hydroxy-L-kynurenine
annotated property: definition
annotated target: A protein modification that effectively converts an L-tryptophan residue to 3'-hydroxy-L-kynurenine.
database_cross_reference: OMSSA:58
database_cross_reference: PubMed:9252331
database_cross_reference: Unimod:350#W

Axiom
annotated source: 3'-hydroxy-L-kynurenine
annotated property: has_exact_synonym
annotated target: hydroxykynureninw
has_synonym_type: Short label from OMSSA

Axiom
annotated source: 3'-hydroxy-L-kynurenine
annotated property: has_related_synonym
annotated target: Trp->Hydroxykynurenin
has_synonym_type: Agreed label from MS community

Axiom
annotated source: 3'-hydroxy-L-kynurenine
annotated property: has_related_synonym
annotated target: tryptophan oxidation to hydroxykynurenin
has_synonym_type: Description (full_name) from Unimod

N'-formyl-L-kynurenine
type: Class
subclass of: MOD_00679
subclass of: MOD_00918
definition: A protein modification that effectively converts an L-tryptophan residue to N'-formyl-L-kynurenine.
diff avg: 32.0
diff formula: O 2
diff mono: 31.989828
formula: C 11 H 10 N 2 O 3
mass avg: 218.21
mass mono: 218.06914
origin: W
source: artifact
database_cross_reference: Unimod:425
has_exact_synonym: Double oxidation of Trp
has_exact_synonym: formylkynureninw
has_obo_namespace: PSI-MOD
has_related_synonym: Dioxidation
has_related_synonym: dihydroxy
has_related_synonym: tryptophan oxidation to formylkynurenin
id: MOD:00464
in_subset: PSI-MOD-slim
comment: From DeltaMass: References:Willy V. Bienvenut, Catherine Déon, Carla Pasquarello, Jennifer M. Campbell, Jean-Charles Sanchez, Marvin L. Vestal, Denis F. Hochstrasser Matrix-assisted laser desorption/ionization-tandemmass spectrometry with high resolution andsensitivity for identification and characterizationof proteins. Proteomics 2002, 2, 868-876 Notes: A double oxidation of tryptophan for which the N-formylkynurenine (+32) structure can be proposed. Many minor peaks accompanying the main peak might also be attributed to other oxidation products of the tryptophan such as kynurenine (+4), an unknown by-product found in all oxidized tryptophan patterns (+13), hydroxytryptophan (+16), 3-hydroxykynurenine (+20) and hydroxy-N-formylkynurenine (+48). See proposed structures at http://www.abrf.org/images/misc/dmass32.jpg.

Axiom
annotated source: N'-formyl-L-kynurenine
annotated property: definition
annotated target: A protein modification that effectively converts an L-tryptophan residue to N'-formyl-L-kynurenine.
database_cross_reference: DeltaMass:356
database_cross_reference: OMSSA:45
database_cross_reference: PubMed:12124932
database_cross_reference: PubMed:12686488
database_cross_reference: PubMed:9252331
database_cross_reference: Unimod:425#W

Axiom
annotated source: N'-formyl-L-kynurenine
annotated property: has_exact_synonym
annotated target: Double oxidation of Trp
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: N'-formyl-L-kynurenine
annotated property: has_exact_synonym
annotated target: formylkynureninw
has_synonym_type: Short label from OMSSA

Axiom
annotated source: N'-formyl-L-kynurenine
annotated property: has_related_synonym
annotated target: Dioxidation
has_synonym_type: Agreed label from MS community

Axiom
annotated source: N'-formyl-L-kynurenine
annotated property: has_related_synonym
annotated target: dihydroxy
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: N'-formyl-L-kynurenine
annotated property: has_related_synonym
annotated target: tryptophan oxidation to formylkynurenin
has_synonym_type: Alternate name from Unimod

dihydroxyphenylalanine (Phe)
type: Class
subclass of: dihydroxylated residue
subclass of: MOD_00914
definition: A protein modification that effectively converts an L-phenylalanine residue to a dihydroxyphenylalanine.
diff avg: 32.0
diff formula: O 2
diff mono: 31.989828
formula: C 9 H 9 N 1 O 3
mass avg: 179.17
mass mono: 179.05824
origin: F
source: artifact
database_cross_reference: Unimod:425
has_exact_synonym: dihydroxyf
has_obo_namespace: PSI-MOD
has_related_synonym: Dioxidation
has_related_synonym: dihydroxy
id: MOD:00465
in_subset: PSI-MOD-slim
comment: Dihydroxyphenyalanines with a 4'-hydroxyl orginate naturally by a monohydroxylation of tyrosine, and not by dihydroxylation of phenylalanine [JSG].

Axiom
annotated source: dihydroxyphenylalanine (Phe)
annotated property: definition
annotated target: A protein modification that effectively converts an L-phenylalanine residue to a dihydroxyphenylalanine.
database_cross_reference: OMSSA:39
database_cross_reference: PubMed:1610822
database_cross_reference: PubMed:1903612
database_cross_reference: PubMed:3734192
database_cross_reference: PubMed:9252331
database_cross_reference: RESID:AA0146#var
database_cross_reference: Unimod:425#F

Axiom
annotated source: dihydroxyphenylalanine (Phe)
annotated property: has_exact_synonym
annotated target: dihydroxyf
has_synonym_type: Short label from OMSSA

Axiom
annotated source: dihydroxyphenylalanine (Phe)
annotated property: has_related_synonym
annotated target: Dioxidation
has_synonym_type: Agreed label from MS community

Axiom
annotated source: dihydroxyphenylalanine (Phe)
annotated property: has_related_synonym
annotated target: dihydroxy
has_synonym_type: Description (full_name) from Unimod

glycosylsphingolipidinositolated residue
type: Class
subclass of: MOD_00764
subclass of: MOD_01155
definition: A protein modification that effectively converts a residue to a glycosylsphingolipidinositolethanolamidated.
has_exact_synonym: GSIRes
has_obo_namespace: PSI-MOD
id: MOD:00466

Axiom
annotated source: glycosylsphingolipidinositolated residue
annotated property: definition
annotated target: A protein modification that effectively converts a residue to a glycosylsphingolipidinositolethanolamidated.
database_cross_reference: PubMed:12626404
database_cross_reference: PubMed:18688235
database_cross_reference: PubMed:8404891

Axiom
annotated source: glycosylsphingolipidinositolated residue
annotated property: has_exact_synonym
annotated target: GSIRes
has_synonym_type: Short label curated by PSI-MOD

iminobiotinyl modified residue
type: Class
subclass of: MOD_00848
definition: A protein modification that effectively substitutes an iminobiotinyl group for a hydrogen atom.
diff avg: 225.31
diff formula: C 10 H 15 N 3 O 1 S 1
diff mono: 225.09358
origin: X
source: artifact
database_cross_reference: Unimod:89
has_obo_namespace: PSI-MOD
has_related_synonym: Iminobiotin
has_related_synonym: Iminobiotinylation
id: MOD:00467

Axiom
annotated source: iminobiotinyl modified residue
annotated property: definition
annotated target: A protein modification that effectively substitutes an iminobiotinyl group for a hydrogen atom.
database_cross_reference: PubMed:9750125
database_cross_reference: Unimod:89

Axiom
annotated source: iminobiotinyl modified residue
annotated property: has_related_synonym
annotated target: Iminobiotin
has_synonym_type: Agreed label from MS community

Axiom
annotated source: iminobiotinyl modified residue
annotated property: has_related_synonym
annotated target: Iminobiotinylation
has_synonym_type: Description (full_name) from Unimod

ESP-Tag light d0
type: Class
subclass of: MOD_01426
definition: modification from Unimod Isotopic label
diff avg: 338.47
diff formula: C 16 H 26 N 4 O 2 S 1
diff mono: 338.17764
origin: X
source: artifact
database_cross_reference: Unimod:90
has_obo_namespace: PSI-MOD
has_related_synonym: ESP
has_related_synonym: ESP-Tag light d0
id: MOD:00468

Axiom
annotated source: ESP-Tag light d0
annotated property: definition
annotated target: modification from Unimod Isotopic label
database_cross_reference: Unimod:90

Axiom
annotated source: ESP-Tag light d0
annotated property: has_related_synonym
annotated target: ESP
has_synonym_type: Agreed label from MS community

Axiom
annotated source: ESP-Tag light d0
annotated property: has_related_synonym
annotated target: ESP-Tag light d0
has_synonym_type: Description (full_name) from Unimod

ESP-Tag heavy d10
type: Class
subclass of: MOD_01431
definition: modification from Unimod Isotopic label
diff avg: 348.24
diff formula: C 16 (1)H 16 (2)H 10 N 4 O 2 S 1
diff mono: 348.24042
origin: X
source: artifact
database_cross_reference: Unimod:91
has_obo_namespace: PSI-MOD
has_related_synonym: ESP-Tag heavy d10
has_related_synonym: ESP:2H(10)
id: MOD:00469

Axiom
annotated source: ESP-Tag heavy d10
annotated property: definition
annotated target: modification from Unimod Isotopic label
database_cross_reference: Unimod:91

Axiom
annotated source: ESP-Tag heavy d10
annotated property: has_related_synonym
annotated target: ESP-Tag heavy d10
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: ESP-Tag heavy d10
annotated property: has_related_synonym
annotated target: ESP:2H(10)
has_synonym_type: Agreed label from MS community

NHS-LC-Biotin
type: Class
subclass of: MOD_00848
definition: modification from Unimod Chemical derivative
diff avg: 339.45
diff formula: C 16 H 25 N 3 O 3 S 1
diff mono: 339.16165
origin: X
source: artifact
database_cross_reference: Unimod:92
has_obo_namespace: PSI-MOD
has_related_synonym: NHS-LC-Biotin
id: MOD:00470

Axiom
annotated source: NHS-LC-Biotin
annotated property: definition
annotated target: modification from Unimod Chemical derivative
database_cross_reference: Unimod:92

Axiom
annotated source: NHS-LC-Biotin
annotated property: has_related_synonym
annotated target: NHS-LC-Biotin
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: NHS-LC-Biotin
annotated property: has_related_synonym
annotated target: NHS-LC-Biotin
has_synonym_type: Interim label from Unimod

EDT-maleimide-PEO-biotin
type: Class
subclass of: MOD_00848
definition: modification from Unimod Chemical derivative
diff avg: 601.8
diff formula: C 25 H 39 N 5 O 6 S 3
diff mono: 601.20624
origin: X
source: artifact
database_cross_reference: Unimod:93
has_obo_namespace: PSI-MOD
has_related_synonym: EDT-maleimide-PEO-biotin
id: MOD:00471

Axiom
annotated source: EDT-maleimide-PEO-biotin
annotated property: definition
annotated target: modification from Unimod Chemical derivative
database_cross_reference: Unimod:93

Axiom
annotated source: EDT-maleimide-PEO-biotin
annotated property: has_related_synonym
annotated target: EDT-maleimide-PEO-biotin
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: EDT-maleimide-PEO-biotin
annotated property: has_related_synonym
annotated target: EDT-maleimide-PEO-biotin
has_synonym_type: Interim label from Unimod

IMID d0
type: Class
subclass of: MOD_01426
definition: modification from Unimod Isotopic label
diff avg: 68.04
diff formula: C 3 (1)H 4 N 2
diff mono: 68.037445
formula: C 9 H 16 N 4 O 1
mass avg: 196.13
mass mono: 196.13242
origin: K
source: artifact
database_cross_reference: Unimod:94
has_obo_namespace: PSI-MOD
has_related_synonym: IMID
has_related_synonym: IMID d0
id: MOD:00472

Axiom
annotated source: IMID d0
annotated property: definition
annotated target: modification from Unimod Isotopic label
database_cross_reference: PubMed:11746907
database_cross_reference: URL:http://dx.doi.org/10.1002/rcm.517
database_cross_reference: Unimod:94

Axiom
annotated source: IMID d0
annotated property: has_related_synonym
annotated target: IMID
has_synonym_type: Agreed label from MS community

Axiom
annotated source: IMID d0
annotated property: has_related_synonym
annotated target: IMID d0
has_synonym_type: Description (full_name) from Unimod

IMID d4
type: Class
subclass of: MOD_01426
definition: modification from Unimod Isotopic label
diff avg: 72.06
diff formula: C 3 (2)H 4 N 2
diff mono: 72.06255
formula: C 9 (1)H 12 (2)H 4 N 4 O 1
mass avg: 200.16
mass mono: 200.15752
origin: K
source: artifact
database_cross_reference: Unimod:95
has_obo_namespace: PSI-MOD
has_related_synonym: IMID d4
has_related_synonym: IMID:2H(4)
id: MOD:00473

Axiom
annotated source: IMID d4
annotated property: definition
annotated target: modification from Unimod Isotopic label
database_cross_reference: PubMed:11746907
database_cross_reference: URL:http://dx.doi.org/10.1002/rcm.517
database_cross_reference: Unimod:95

Axiom
annotated source: IMID d4
annotated property: has_related_synonym
annotated target: IMID d4
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: IMID d4
annotated property: has_related_synonym
annotated target: IMID:2H(4)
has_synonym_type: Agreed label from MS community

S-([1,1,2-(2)H3]-carboxamidoethyl)-L-cysteine
type: Class
subclass of: MOD_01426
subclass of: Restriction
  on property: derives from
  some values from: S-carboxamidoethyl-L-cysteine
definition: A protein modification that effectively converts an L-cysteine residue to S-(1,1,2-(2)H3)-propanamide-L-cysteine.
diff avg: 74.06
diff formula: C 3 (1)H 2 (2)H 3 N 1 O 1
diff mono: 74.05595
formula: C 6 (1)H 7 (2)H 3 N 2 O 2 S 1
mass avg: 177.07
mass mono: 177.06512
origin: C
source: artifact
database_cross_reference: Unimod:97
has_exact_synonym: S-([1,1,2-(2)H3]-3-amino-3-oxopropyl)cysteine
has_exact_synonym: S-([1,1,2-(2)H3]-carbamoylethyl)-L-cysteine
has_exact_synonym: S-([1,1,2-(2)H3]-propanamide)-L-cysteine
has_obo_namespace: PSI-MOD
has_related_synonym: Acrylamide d3
has_related_synonym: Propionamide:2H(3)
id: MOD:00474

Axiom
annotated source: S-([1,1,2-(2)H3]-carboxamidoethyl)-L-cysteine
annotated property: definition
annotated target: A protein modification that effectively converts an L-cysteine residue to S-(1,1,2-(2)H3)-propanamide-L-cysteine.
database_cross_reference: Unimod:97#C

Axiom
annotated source: S-([1,1,2-(2)H3]-carboxamidoethyl)-L-cysteine
annotated property: has_exact_synonym
annotated target: S-([1,1,2-(2)H3]-3-amino-3-oxopropyl)cysteine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: S-([1,1,2-(2)H3]-carboxamidoethyl)-L-cysteine
annotated property: has_exact_synonym
annotated target: S-([1,1,2-(2)H3]-carbamoylethyl)-L-cysteine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: S-([1,1,2-(2)H3]-carboxamidoethyl)-L-cysteine
annotated property: has_exact_synonym
annotated target: S-([1,1,2-(2)H3]-propanamide)-L-cysteine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: S-([1,1,2-(2)H3]-carboxamidoethyl)-L-cysteine
annotated property: has_related_synonym
annotated target: Acrylamide d3
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: S-([1,1,2-(2)H3]-carboxamidoethyl)-L-cysteine
annotated property: has_related_synonym
annotated target: Propionamide:2H(3)
has_synonym_type: Agreed label from MS community

2-amino-L-tyrosine
type: Class
subclass of: MOD_00919
subclass of: MOD_02039
definition: A protein modification that effectively converts an L-tyrosine residue to 2-amino-L-tyrosine.
diff avg: 15.02
diff formula: H 1 N 1
diff mono: 15.010899
formula: C 9 H 10 N 2 O 2
mass avg: 178.19
mass mono: 178.07423
origin: Y
source: artifact
database_cross_reference: Unimod:342
has_obo_namespace: PSI-MOD
has_related_synonym: Amino
has_related_synonym: Tyrosine oxidation to 2-aminotyrosine
id: MOD:00475

Axiom
annotated source: 2-amino-L-tyrosine
annotated property: definition
annotated target: A protein modification that effectively converts an L-tyrosine residue to 2-amino-L-tyrosine.
database_cross_reference: PubMed:8839040
database_cross_reference: PubMed:9252331
database_cross_reference: Unimod:342#Y

Axiom
annotated source: 2-amino-L-tyrosine
annotated property: has_related_synonym
annotated target: Amino
has_synonym_type: Agreed label from MS community

Axiom
annotated source: 2-amino-L-tyrosine
annotated property: has_related_synonym
annotated target: Tyrosine oxidation to 2-aminotyrosine
has_synonym_type: Description (full_name) from Unimod

monogalactosylated residue
type: Class
subclass of: MOD_00728
subclass of: MOD_00761
definition: A protein modification that effectively replaces a hydrogen atom with an galactose group through a glycosidic bond.
diff avg: 162.14
diff formula: C 6 H 10 O 5
diff mono: 162.05283
origin: X
source: natural
has_exact_synonym: GalRes
has_obo_namespace: PSI-MOD
id: MOD:00476
in_subset: PSI-MOD-slim

Axiom
annotated source: monogalactosylated residue
annotated property: definition
annotated target: A protein modification that effectively replaces a hydrogen atom with an galactose group through a glycosidic bond.
database_cross_reference: PubMed:18688235

Axiom
annotated source: monogalactosylated residue
annotated property: has_exact_synonym
annotated target: GalRes
has_synonym_type: Short label curated by PSI-MOD

2-pyrrolidone
type: Class
subclass of: MOD_00683
subclass of: MOD_00915
definition: A protein modification that effectively converts, by oxidative decarboxylation, an L-proline residue to 2-pyrrolidone with breakage of the peptide chain.
diff avg: -13.02
diff formula: C -1 H -1 N 0 O 0
diff mono: -13.007825
formula: C 4 H 6 N 1 O 1
mass avg: 84.1
mass mono: 84.04494
origin: P
source: artifact
database_cross_reference: Unimod:360
has_obo_namespace: PSI-MOD
has_related_synonym: Pro->Pyrrolidinone
has_related_synonym: Proline oxidation to pyrrolidinone
id: MOD:00477
comment: The oxidative decarboxylation of a proline residue results in breaking of the peptide chain, leaving a peptidyl-2-pyrrolidone at the C-terminus. The difference formula, derived from the result in the original citation, has been corrected from the Unimod entry.

Axiom
annotated source: 2-pyrrolidone
annotated property: definition
annotated target: A protein modification that effectively converts, by oxidative decarboxylation, an L-proline residue to 2-pyrrolidone with breakage of the peptide chain.
database_cross_reference: PubMed:2161657
database_cross_reference: PubMed:9252331
database_cross_reference: Unimod:360#P

Axiom
annotated source: 2-pyrrolidone
annotated property: has_related_synonym
annotated target: Pro->Pyrrolidinone
has_synonym_type: Agreed label from MS community

Axiom
annotated source: 2-pyrrolidone
annotated property: has_related_synonym
annotated target: Proline oxidation to pyrrolidinone
has_synonym_type: Description (full_name) from Unimod

glutamyl semialdehyde (Pro)
type: Class
subclass of: MOD_00679
subclass of: MOD_00915
subclass of: MOD_01440
definition: A protein modification that effectively converts an L-proline residue to L-glutamyl semialdehyde.
diff avg: 16.0
diff formula: C 0 H 0 N 0 O 1
diff mono: 15.994915
formula: C 5 H 7 N 1 O 2
mass avg: 113.12
mass mono: 113.047676
origin: P
source: artifact
database_cross_reference: Unimod:35
has_exact_synonym: Oxidation of proline to gamma-glutamyl semialdehyde
has_exact_synonym: gamma-glutamyl semialdehyde
has_exact_synonym: glutamyl 5-semialdehyde
has_exact_synonym: glutamyl aldehyde
has_obo_namespace: PSI-MOD
has_related_synonym: Oxidation
has_related_synonym: Oxidation or Hydroxylation
id: MOD:00478

Axiom
annotated source: glutamyl semialdehyde (Pro)
annotated property: definition
annotated target: A protein modification that effectively converts an L-proline residue to L-glutamyl semialdehyde.
database_cross_reference: DeltaMass:354
database_cross_reference: PubMed:11120890
database_cross_reference: PubMed:2563380
database_cross_reference: PubMed:9252331
database_cross_reference: Unimod:35#P

Axiom
annotated source: glutamyl semialdehyde (Pro)
annotated property: has_exact_synonym
annotated target: Oxidation of proline to gamma-glutamyl semialdehyde
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: glutamyl semialdehyde (Pro)
annotated property: has_exact_synonym
annotated target: gamma-glutamyl semialdehyde
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: glutamyl semialdehyde (Pro)
annotated property: has_exact_synonym
annotated target: glutamyl 5-semialdehyde
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: glutamyl semialdehyde (Pro)
annotated property: has_exact_synonym
annotated target: glutamyl aldehyde
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: glutamyl semialdehyde (Pro)
annotated property: has_related_synonym
annotated target: Oxidation
has_synonym_type: Interim label from Unimod

Axiom
annotated source: glutamyl semialdehyde (Pro)
annotated property: has_related_synonym
annotated target: Oxidation or Hydroxylation
has_synonym_type: Description (full_name) from Unimod

glutamyl semialdehyde (Arg)
type: Class
subclass of: MOD_00902
subclass of: MOD_01440
definition: A protein modification that effectively converts an L-arginine residue to L-glutamyl semialdehyde.
diff avg: -43.07
diff formula: C -1 H -5 N -3 O 1
diff mono: -43.053432
formula: C 5 H 7 N 1 O 2
mass avg: 113.12
mass mono: 113.047676
origin: R
source: artifact
database_cross_reference: Unimod:344
has_exact_synonym: Oxidation of arginine (to glutamic acid)
has_obo_namespace: PSI-MOD
has_related_synonym: Arg->GluSA
has_related_synonym: Arginine oxidation to glutamic semialdehyde
id: MOD:00479
comment: From DeltaMass: Average Mass: -27 Monoisotopic Mass Change:-27.06 Average Mass Change:-27.07 References:Amici A, Levine, RL, Tsai, L, and Stadtman, ER: Conversion of amino acid residues in proteins and amino acid homopolymers to carbonyl derivatives by metal-catalyzed oxidation reactions. Journal of Biological Chemistry 264: 3341-3346 1989.Requena JR, Chao CC, Levine RL, and Stadtman ER: Glutamic and aminoadipic semialdehydes are the main carbonyl products of metal-catalyzed oxidation of proteins. Proceedings of the National Academy of Sciences USA 98: 69-74 2001.

Axiom
annotated source: glutamyl semialdehyde (Arg)
annotated property: definition
annotated target: A protein modification that effectively converts an L-arginine residue to L-glutamyl semialdehyde.
database_cross_reference: DeltaMass:351
database_cross_reference: PubMed:11120890
database_cross_reference: PubMed:1680314
database_cross_reference: PubMed:9252331
database_cross_reference: Unimod:344#R

Axiom
annotated source: glutamyl semialdehyde (Arg)
annotated property: has_exact_synonym
annotated target: Oxidation of arginine (to glutamic acid)
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: glutamyl semialdehyde (Arg)
annotated property: has_related_synonym
annotated target: Arg->GluSA
has_synonym_type: Agreed label from MS community

Axiom
annotated source: glutamyl semialdehyde (Arg)
annotated property: has_related_synonym
annotated target: Arginine oxidation to glutamic semialdehyde
has_synonym_type: Description (full_name) from Unimod

Applied Biosystems cleavable ICAT(TM) light
type: Class
subclass of: MOD_01426
definition: modification from Unimod Isotopic label
diff avg: 227.26
diff formula: C 10 H 17 N 3 O 3
diff mono: 227.12698
formula: C 13 H 22 N 4 O 4 S 1
mass avg: 330.4
mass mono: 330.13617
origin: C
source: artifact
database_cross_reference: Unimod:105
has_exact_synonym: icatlight
has_obo_namespace: PSI-MOD
has_related_synonym: Applied Biosystems cleavable ICAT(TM) light
has_related_synonym: ICAT-C
id: MOD:00480
in_subset: PSI-MOD-slim

Axiom
annotated source: Applied Biosystems cleavable ICAT(TM) light
annotated property: definition
annotated target: modification from Unimod Isotopic label
database_cross_reference: OMSSA:129
database_cross_reference: URL:http://www.appliedbiosystems.com/products/productdetail.cfm?prod_id=153
database_cross_reference: Unimod:105#C

Axiom
annotated source: Applied Biosystems cleavable ICAT(TM) light
annotated property: has_exact_synonym
annotated target: icatlight
has_synonym_type: Short label from OMSSA

Axiom
annotated source: Applied Biosystems cleavable ICAT(TM) light
annotated property: has_related_synonym
annotated target: Applied Biosystems cleavable ICAT(TM) light
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: Applied Biosystems cleavable ICAT(TM) light
annotated property: has_related_synonym
annotated target: ICAT-C
has_synonym_type: Agreed label from MS community

Applied Biosystems cleavable ICAT(TM) heavy
type: Class
subclass of: MOD_01428
definition: modification from Unimod Isotopic label
diff avg: 236.16
diff formula: (12)C 1 (13)C 9 H 17 N 3 O 3
diff mono: 236.15718
formula: (12)C 4 (13)C 9 H 22 N 4 O 4 S 1
mass avg: 339.17
mass mono: 339.16638
origin: C
source: artifact
database_cross_reference: Unimod:106
has_exact_synonym: icatheavy
has_obo_namespace: PSI-MOD
has_related_synonym: Applied Biosystems cleavable ICAT(TM) heavy
has_related_synonym: ICAT-C:13C(9)
id: MOD:00481
in_subset: PSI-MOD-slim

Axiom
annotated source: Applied Biosystems cleavable ICAT(TM) heavy
annotated property: definition
annotated target: modification from Unimod Isotopic label
database_cross_reference: OMSSA:130
database_cross_reference: URL:http://www.appliedbiosystems.com/products/productdetail.cfm?prod_id=153
database_cross_reference: Unimod:106#C

Axiom
annotated source: Applied Biosystems cleavable ICAT(TM) heavy
annotated property: has_exact_synonym
annotated target: icatheavy
has_synonym_type: Short label from OMSSA

Axiom
annotated source: Applied Biosystems cleavable ICAT(TM) heavy
annotated property: has_related_synonym
annotated target: Applied Biosystems cleavable ICAT(TM) heavy
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: Applied Biosystems cleavable ICAT(TM) heavy
annotated property: has_related_synonym
annotated target: ICAT-C:13C(9)
has_synonym_type: Agreed label from MS community

N-formyl-L-methionine (Met)
type: Class
subclass of: MOD_00913
definition: A protein modification that effectively converts an L-methionine residue to N-formyl-L-methionine (not known as a natural, post-translational modification process).
diff avg: 28.01
diff formula: C 1 H 0 N 0 O 1 S 0
diff mono: 27.994915
formula: C 6 H 10 N 1 O 2 S 1
mass avg: 160.21
mass mono: 160.04323
origin: M
source: artifact
term spec: N-term
database_cross_reference: Unimod:122
database_cross_reference: uniprot.ptm:PTM-0212
has_exact_synonym: (2S)-2-formylamino-4-(methylsulfanyl)butanoic acid
has_exact_synonym: 2-formamido-4-(methylsulfanyl)butanoic acid
has_exact_synonym: 2-formylamino-4-(methylthio)butanoic acid
has_exact_synonym: 2-formylazanyl-4-(methylsulfanyl)butanoic acid
has_exact_synonym: MOD_RES N-formylmethionine
has_exact_synonym: N-formyl-L-methionine
has_exact_synonym: N-formylated L-methionine
has_exact_synonym: NFoMet
has_obo_namespace: PSI-MOD
id: MOD:00482
comment: This entry is for the artifactual formation of N-formyl-L-methionine from methionine. For encoded N-formyl-L-methionine, use MOD:00030 [JSG].

Axiom
annotated source: N-formyl-L-methionine (Met)
annotated property: definition
annotated target: A protein modification that effectively converts an L-methionine residue to N-formyl-L-methionine (not known as a natural, post-translational modification process).
database_cross_reference: PubMed:11152118
database_cross_reference: PubMed:2165784
database_cross_reference: PubMed:3042771
database_cross_reference: RESID:AA0021#MET
database_cross_reference: Unimod:122#M

Axiom
annotated source: N-formyl-L-methionine (Met)
annotated property: has_exact_synonym
annotated target: (2S)-2-formylamino-4-(methylsulfanyl)butanoic acid
has_synonym_type: Systematic name from RESID

Axiom
annotated source: N-formyl-L-methionine (Met)
annotated property: has_exact_synonym
annotated target: 2-formamido-4-(methylsulfanyl)butanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-formyl-L-methionine (Met)
annotated property: has_exact_synonym
annotated target: 2-formylamino-4-(methylthio)butanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-formyl-L-methionine (Met)
annotated property: has_exact_synonym
annotated target: 2-formylazanyl-4-(methylsulfanyl)butanoic acid
has_synonym_type: Alternate name from RESID

Axiom
annotated source: N-formyl-L-methionine (Met)
annotated property: has_exact_synonym
annotated target: MOD_RES N-formylmethionine
has_synonym_type: Protein feature description from UniProtKB

Axiom
annotated source: N-formyl-L-methionine (Met)
annotated property: has_exact_synonym
annotated target: N-formyl-L-methionine
has_synonym_type: Name from RESID

Axiom
annotated source: N-formyl-L-methionine (Met)
annotated property: has_exact_synonym
annotated target: N-formylated L-methionine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: N-formyl-L-methionine (Met)
annotated property: has_exact_synonym
annotated target: NFoMet
has_synonym_type: Short label curated by PSI-MOD

N-ethylmaleimide derivatized cysteine
type: Class
subclass of: MOD_00848
subclass of: MOD_00905
definition: A protein modification that is produced by reaction with N-ethylmaleimide.
diff avg: 125.13
diff formula: C 6 H 7 N 1 O 2
diff mono: 125.047676
formula: C 9 H 12 N 2 O 3 S 1
mass avg: 228.27
mass mono: 228.05687
origin: C
source: artifact
database_cross_reference: Unimod:108
has_exact_synonym: nemc
has_obo_namespace: PSI-MOD
has_related_synonym: N-ethylmaleimide on cysteines
has_related_synonym: Nethylmaleimide
id: MOD:00483

Axiom
annotated source: N-ethylmaleimide derivatized cysteine
annotated property: definition
annotated target: A protein modification that is produced by reaction with N-ethylmaleimide.
database_cross_reference: OMSSA:83
database_cross_reference: PubMed:11813307
database_cross_reference: PubMed:12777388
database_cross_reference: Unimod:108#C

Axiom
annotated source: N-ethylmaleimide derivatized cysteine
annotated property: has_exact_synonym
annotated target: nemc
has_synonym_type: Short label from OMSSA

Axiom
annotated source: N-ethylmaleimide derivatized cysteine
annotated property: has_related_synonym
annotated target: N-ethylmaleimide on cysteines
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: N-ethylmaleimide derivatized cysteine
annotated property: has_related_synonym
annotated target: Nethylmaleimide
has_synonym_type: Agreed label from MS community

oxidized lysine biotinylated with biotin-LC-hydrazide, reduced
type: Class
subclass of: MOD_00848
subclass of: MOD_00912
definition: modification from Unimod Chemical derivative
diff avg: 354.47
diff formula: C 16 H 26 N 4 O 3 S 1
diff mono: 354.17258
formula: C 22 H 38 N 6 O 4 S 1
mass avg: 482.64
mass mono: 482.26752
origin: K
source: artifact
database_cross_reference: Unimod:112
has_obo_namespace: PSI-MOD
has_related_synonym: OxLysBiotinRed
has_related_synonym: Oxidized lysine biotinylated with biotin-LC-hydrazide, reduced
id: MOD:00484

Axiom
annotated source: oxidized lysine biotinylated with biotin-LC-hydrazide, reduced
annotated property: definition
annotated target: modification from Unimod Chemical derivative
database_cross_reference: Unimod:112#K

Axiom
annotated source: oxidized lysine biotinylated with biotin-LC-hydrazide, reduced
annotated property: has_related_synonym
annotated target: OxLysBiotinRed
has_synonym_type: Interim label from Unimod

Axiom
annotated source: oxidized lysine biotinylated with biotin-LC-hydrazide, reduced
annotated property: has_related_synonym
annotated target: Oxidized lysine biotinylated with biotin-LC-hydrazide, reduced
has_synonym_type: Description (full_name) from Unimod

oxidized lysine biotinylated with biotin-LC-hydrazide
type: Class
subclass of: MOD_00848
subclass of: MOD_00912
definition: modification from Unimod Chemical derivative
diff avg: 352.45
diff formula: C 16 H 24 N 4 O 3 S 1
diff mono: 352.15692
formula: C 22 H 36 N 6 O 4 S 1
mass avg: 480.63
mass mono: 480.25186
origin: K
source: artifact
database_cross_reference: Unimod:113
has_obo_namespace: PSI-MOD
has_related_synonym: OxLysBiotin
has_related_synonym: Oxidized lysine biotinylated with biotin-LC-hydrazide
id: MOD:00485

Axiom
annotated source: oxidized lysine biotinylated with biotin-LC-hydrazide
annotated property: definition
annotated target: modification from Unimod Chemical derivative
database_cross_reference: Unimod:113#K

Axiom
annotated source: oxidized lysine biotinylated with biotin-LC-hydrazide
annotated property: has_related_synonym
annotated target: OxLysBiotin
has_synonym_type: Interim label from Unimod

Axiom
annotated source: oxidized lysine biotinylated with biotin-LC-hydrazide
annotated property: has_related_synonym
annotated target: Oxidized lysine biotinylated with biotin-LC-hydrazide
has_synonym_type: Description (full_name) from Unimod

oxidized proline biotinylated with biotin-LC-hydrazide, reduced
type: Class
subclass of: MOD_00848
subclass of: MOD_00915
definition: modification from Unimod Chemical derivative
diff avg: 371.5
diff formula: C 16 H 29 N 5 O 3 S 1
diff mono: 371.1991
formula: C 21 H 36 N 6 O 4 S 1
mass avg: 468.62
mass mono: 468.25186
origin: P
source: artifact
database_cross_reference: Unimod:114
has_obo_namespace: PSI-MOD
has_related_synonym: OxProBiotinRed
has_related_synonym: Oxidized proline biotinylated with biotin-LC-hydrazide, reduced
id: MOD:00486

Axiom
annotated source: oxidized proline biotinylated with biotin-LC-hydrazide, reduced
annotated property: definition
annotated target: modification from Unimod Chemical derivative
database_cross_reference: Unimod:114#C

Axiom
annotated source: oxidized proline biotinylated with biotin-LC-hydrazide, reduced
annotated property: has_related_synonym
annotated target: OxProBiotinRed
has_synonym_type: Interim label from Unimod

Axiom
annotated source: oxidized proline biotinylated with biotin-LC-hydrazide, reduced
annotated property: has_related_synonym
annotated target: Oxidized proline biotinylated with biotin-LC-hydrazide, reduced
has_synonym_type: Description (full_name) from Unimod

oxidized proline biotinylated with biotin-LC-hydrazide
type: Class
subclass of: MOD_00848
subclass of: MOD_00915
definition: modification from Unimod Chemical derivative
diff avg: 369.48
diff formula: C 16 H 27 N 5 O 3 S 1
diff mono: 369.18347
formula: C 21 H 34 N 6 O 4 S 1
mass avg: 466.6
mass mono: 466.23624
origin: P
source: artifact
database_cross_reference: Unimod:115
has_obo_namespace: PSI-MOD
has_related_synonym: OxProBiotin
has_related_synonym: Oxidized Proline biotinylated with biotin-LC-hydrazide
id: MOD:00487

Axiom
annotated source: oxidized proline biotinylated with biotin-LC-hydrazide
annotated property: definition
annotated target: modification from Unimod Chemical derivative
database_cross_reference: Unimod:115#C

Axiom
annotated source: oxidized proline biotinylated with biotin-LC-hydrazide
annotated property: has_related_synonym
annotated target: OxProBiotin
has_synonym_type: Interim label from Unimod

Axiom
annotated source: oxidized proline biotinylated with biotin-LC-hydrazide
annotated property: has_related_synonym
annotated target: Oxidized Proline biotinylated with biotin-LC-hydrazide
has_synonym_type: Description (full_name) from Unimod

oxidized arginine biotinylated with biotin-LC-hydrazide
type: Class
subclass of: MOD_00848
subclass of: MOD_00902
definition: modification from Unimod Chemical derivative
diff avg: 310.41
diff formula: C 15 H 22 N 2 O 3 S 1
diff mono: 310.1351
formula: C 21 H 34 N 6 O 4 S 1
mass avg: 466.6
mass mono: 466.23624
origin: R
source: artifact
has_obo_namespace: PSI-MOD
has_related_synonym: OxArgBiotin
has_related_synonym: Oxidized arginine biotinylated with biotin-LC-hydrazide
id: MOD:00488

Axiom
annotated source: oxidized arginine biotinylated with biotin-LC-hydrazide
annotated property: definition
annotated target: modification from Unimod Chemical derivative
database_cross_reference: Unimod:116#C

Axiom
annotated source: oxidized arginine biotinylated with biotin-LC-hydrazide
annotated property: has_related_synonym
annotated target: OxArgBiotin
has_synonym_type: Interim label from Unimod

Axiom
annotated source: oxidized arginine biotinylated with biotin-LC-hydrazide
annotated property: has_related_synonym
annotated target: Oxidized arginine biotinylated with biotin-LC-hydrazide
has_synonym_type: Description (full_name) from Unimod

oxidized arginine biotinylated with biotin-LC-hydrazide, reduced
type: Class
subclass of: MOD_00848
subclass of: MOD_00902
definition: modification from Unimod Chemical derivative
diff avg: 312.43
diff formula: C 15 H 24 N 2 O 3 S 1
diff mono: 312.15076
formula: C 21 H 36 N 6 O 4 S 1
mass avg: 468.62
mass mono: 468.25186
origin: R
source: artifact
database_cross_reference: Unimod:117
has_obo_namespace: PSI-MOD
has_related_synonym: OxArgBiotinRed
has_related_synonym: Oxidized arginine biotinylated with biotin-LC-hydrazide, reduced
id: MOD:00489

Axiom
annotated source: oxidized arginine biotinylated with biotin-LC-hydrazide, reduced
annotated property: definition
annotated target: modification from Unimod Chemical derivative
database_cross_reference: Unimod:117#C

Axiom
annotated source: oxidized arginine biotinylated with biotin-LC-hydrazide, reduced
annotated property: has_related_synonym
annotated target: OxArgBiotinRed
has_synonym_type: Interim label from Unimod

Axiom
annotated source: oxidized arginine biotinylated with biotin-LC-hydrazide, reduced
annotated property: has_related_synonym
annotated target: Oxidized arginine biotinylated with biotin-LC-hydrazide, reduced
has_synonym_type: Description (full_name) from Unimod

EDT-iodo-PEO-biotin
type: Class
subclass of: MOD_00848
definition: modification from Unimod Chemical derivative
diff avg: 490.7
diff formula: C 20 H 34 N 4 O 4 S 3
diff mono: 490.17422
origin: X
database_cross_reference: Unimod:118
has_obo_namespace: PSI-MOD
has_related_synonym: EDT-iodo-PEO-biotin
has_related_synonym: EDT-iodoacetyl-PEO-biotin
id: MOD:00490

Axiom
annotated source: EDT-iodo-PEO-biotin
annotated property: definition
annotated target: modification from Unimod Chemical derivative
database_cross_reference: Unimod:118

Axiom
annotated source: EDT-iodo-PEO-biotin
annotated property: has_related_synonym
annotated target: EDT-iodo-PEO-biotin
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: EDT-iodo-PEO-biotin
annotated property: has_related_synonym
annotated target: EDT-iodoacetyl-PEO-biotin
has_synonym_type: Agreed label from MS community

thio ether formation - BTP Adduct
type: Class
subclass of: MOD_00848
subclass of: MOD_00861
subclass of: MOD_00905
definition: modification from Unimod Chemical derivative
diff avg: 316.38
diff formula: C 22 H 21 P 1
diff mono: 316.1381
formula: C 25 H 26 N 1 O 1 P 1 S 1
mass avg: 419.52
mass mono: 419.14728
origin: C
source: artifact
database_cross_reference: Unimod:119
has_obo_namespace: PSI-MOD
has_related_synonym: IBTP
has_related_synonym: Thio Ether Formation - BTP Adduct
id: MOD:00491

Axiom
annotated source: thio ether formation - BTP Adduct
annotated property: definition
annotated target: modification from Unimod Chemical derivative
database_cross_reference: PubMed:11861642
database_cross_reference: Unimod:119#C

Axiom
annotated source: thio ether formation - BTP Adduct
annotated property: has_related_synonym
annotated target: IBTP
has_synonym_type: Agreed label from MS community

Axiom
annotated source: thio ether formation - BTP Adduct
annotated property: has_related_synonym
annotated target: Thio Ether Formation - BTP Adduct
has_synonym_type: Description (full_name) from Unimod

ubiquitination signature dipeptidyl lysine
type: Class
subclass of: MOD_01875
subclass of: MOD_02047
subclass of: MOD_02051
subclass of: Restriction
  on property: derives from
  some values from: MOD_01148
definition: A protein modification that crosslinks the N6-amino of a peptidyl lysine with the carboxyl of glycylglycine, the two glycine residues left after tryptic digestion of ubiquitin.
diff avg: 114.1
diff formula: C 4 H 6 N 2 O 2
diff mono: 114.04293
formula: C 10 H 18 N 4 O 3
mass avg: 242.28
mass mono: 242.1379
origin: K
source: artifact
database_cross_reference: Unimod:121
has_exact_synonym: N6-(glycylglycyl)lysine
has_exact_synonym: N6-glycylglycyl-L-lysine
has_exact_synonym: glyglyk
has_obo_namespace: PSI-MOD
has_related_synonym: GlyGly
has_related_synonym: ubiquitinylation residue
id: MOD:00492

Axiom
annotated source: ubiquitination signature dipeptidyl lysine
annotated property: definition
annotated target: A protein modification that crosslinks the N6-amino of a peptidyl lysine with the carboxyl of glycylglycine, the two glycine residues left after tryptic digestion of ubiquitin.
database_cross_reference: OMSSA:52
database_cross_reference: PubMed:11125103
database_cross_reference: PubMed:12612601
database_cross_reference: PubMed:12872131
database_cross_reference: RESID:AA0125#var
database_cross_reference: Unimod:121#K

Axiom
annotated source: ubiquitination signature dipeptidyl lysine
annotated property: has_exact_synonym
annotated target: N6-(glycylglycyl)lysine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: ubiquitination signature dipeptidyl lysine
annotated property: has_exact_synonym
annotated target: N6-glycylglycyl-L-lysine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: ubiquitination signature dipeptidyl lysine
annotated property: has_exact_synonym
annotated target: glyglyk
has_synonym_type: Short label from OMSSA

Axiom
annotated source: ubiquitination signature dipeptidyl lysine
annotated property: has_related_synonym
annotated target: GlyGly
has_synonym_type: Agreed label from MS community

Axiom
annotated source: ubiquitination signature dipeptidyl lysine
annotated property: has_related_synonym
annotated target: ubiquitinylation residue
has_synonym_type: Description (full_name) from Unimod

formylated residue
type: Class
subclass of: acylated residue
definition: A protein modification that effectively replaces a hydrogen atom with a formyl group.
diff avg: 28.01
diff formula: C 1 O 1
diff mono: 27.994915
origin: X
database_cross_reference: Unimod:122
has_exact_synonym: FoRes
has_exact_synonym: Formylation (CHO)
has_obo_namespace: PSI-MOD
has_related_synonym: Formyl
has_related_synonym: Formylation
id: MOD:00493
in_subset: PSI-MOD-slim
comment: From DeltaMass: Average Mass: 28

Axiom
annotated source: formylated residue
annotated property: definition
annotated target: A protein modification that effectively replaces a hydrogen atom with a formyl group.
database_cross_reference: DeltaMass:0
database_cross_reference: PubMed:15799070
database_cross_reference: Unimod:122

Axiom
annotated source: formylated residue
annotated property: has_exact_synonym
annotated target: FoRes
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: formylated residue
annotated property: has_exact_synonym
annotated target: Formylation (CHO)
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: formylated residue
annotated property: has_related_synonym
annotated target: Formyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: formylated residue
annotated property: has_related_synonym
annotated target: Formylation
has_synonym_type: Description (full_name) from Unimod

N-iodoacetyl, p-chlorobenzyl-12C6-glucamine
type: Class
subclass of: MOD_00905
subclass of: MOD_01426
definition: modification from Unimod Isotopic label
diff avg: 345.78
diff formula: C 15 Cl 1 H 20 N 1 O 6 S 0
diff mono: 345.0979
formula: C 18 Cl 1 H 25 N 2 O 7 S 1
mass avg: 448.91
mass mono: 448.1071
origin: C
source: artifact
database_cross_reference: Unimod:123
has_obo_namespace: PSI-MOD
has_related_synonym: ICAT-H
has_related_synonym: N-iodoacetyl, p-chlorobenzyl-12C6-glucamine
id: MOD:00494

Axiom
annotated source: N-iodoacetyl, p-chlorobenzyl-12C6-glucamine
annotated property: definition
annotated target: modification from Unimod Isotopic label
database_cross_reference: PubMed:12185208
database_cross_reference: Unimod:123#C

Axiom
annotated source: N-iodoacetyl, p-chlorobenzyl-12C6-glucamine
annotated property: has_related_synonym
annotated target: ICAT-H
has_synonym_type: Agreed label from MS community

Axiom
annotated source: N-iodoacetyl, p-chlorobenzyl-12C6-glucamine
annotated property: has_related_synonym
annotated target: N-iodoacetyl, p-chlorobenzyl-12C6-glucamine
has_synonym_type: Description (full_name) from Unimod

N-iodoacetyl, p-chlorobenzyl-13C6-glucamine
type: Class
subclass of: MOD_00905
subclass of: MOD_01426
definition: modification from Unimod Isotopic label
diff avg: 351.12
diff formula: (12)C 9 (13)C 6 Cl 1 H 20 N 1 O 6 S 0
diff mono: 351.11804
formula: (12)C 12 (13)C 6 Cl 1 H 25 N 2 O 7 S 1
mass avg: 454.13
mass mono: 454.12723
origin: C
source: artifact
database_cross_reference: Unimod:124
has_obo_namespace: PSI-MOD
has_related_synonym: ICAT-H:13C(6)
has_related_synonym: N-iodoacetyl, p-chlorobenzyl-13C6-glucamine
id: MOD:00495

Axiom
annotated source: N-iodoacetyl, p-chlorobenzyl-13C6-glucamine
annotated property: definition
annotated target: modification from Unimod Isotopic label
database_cross_reference: PubMed:12185208
database_cross_reference: Unimod:124#C

Axiom
annotated source: N-iodoacetyl, p-chlorobenzyl-13C6-glucamine
annotated property: has_related_synonym
annotated target: ICAT-H:13C(6)
has_synonym_type: Agreed label from MS community

Axiom
annotated source: N-iodoacetyl, p-chlorobenzyl-13C6-glucamine
annotated property: has_related_synonym
annotated target: N-iodoacetyl, p-chlorobenzyl-13C6-glucamine
has_synonym_type: Description (full_name) from Unimod

reductive amination-D
type: Class
definition: OBSOLETE because Unimod entry 125 is merged with entry 199, remap to id: MOD:00552
term replaced by: MOD:00552
diff avg: 32.06
diff formula: C 2 (2)H 4
diff mono: 32.056408
origin: K
source: artifact
database_cross_reference: Unimod:125
has_obo_namespace: PSI-MOD
id: MOD:00496
deprecated: true

Axiom
annotated source: reductive amination-D
annotated property: definition
annotated target: OBSOLETE because Unimod entry 125 is merged with entry 199, remap to id: MOD:00552
database_cross_reference: Unimod:125

3-sulfanylpropanoyl (N-term and Lys)
type: Class
subclass of: MOD_00848
subclass of: MOD_00912
definition: modification from Unimod [(35)S]dithiobis(succinimidyl propionate) crosslinking
diff avg: 88.12
diff formula: C 3 H 4 O 1 S 1
diff mono: 87.99828
formula: C 9 H 16 N 2 O 2 S 1
mass avg: 216.3
mass mono: 216.09325
origin: K
source: artifact
database_cross_reference: Unimod:126
has_obo_namespace: PSI-MOD
has_related_synonym: 3,3-Dithio-bis-(sulfosuccinimidyl)propionate
has_related_synonym: 3-sulfanylpropanoyl
has_related_synonym: Thioacyl
id: MOD:00497
comment: The name "thioacylation of primary amines" in Unimod was a misdescription [JSG].

Axiom
annotated source: 3-sulfanylpropanoyl (N-term and Lys)
annotated property: definition
annotated target: modification from Unimod [(35)S]dithiobis(succinimidyl propionate) crosslinking
database_cross_reference: PubMed:957432
database_cross_reference: Unimod:126

Axiom
annotated source: 3-sulfanylpropanoyl (N-term and Lys)
annotated property: has_related_synonym
annotated target: 3,3-Dithio-bis-(sulfosuccinimidyl)propionate
has_synonym_type: Alternate name from Unimod

Axiom
annotated source: 3-sulfanylpropanoyl (N-term and Lys)
annotated property: has_related_synonym
annotated target: 3-sulfanylpropanoyl
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: 3-sulfanylpropanoyl (N-term and Lys)
annotated property: has_related_synonym
annotated target: Thioacyl
has_synonym_type: Agreed label from MS community

fluorinated residue
type: Class
subclass of: MOD_00694
definition: A protein modification that effectively substitutes a hydrogen of a residue with a fluorine atom.
origin: X
source: artifact
has_exact_synonym: FRes
has_exact_synonym: Fluorophenylalanyl
has_obo_namespace: PSI-MOD
has_related_synonym: Fluoro
has_related_synonym: fluorophenylalanine replacement of phenylalanine
id: MOD:00498

Axiom
annotated source: fluorinated residue
annotated property: definition
annotated target: A protein modification that effectively substitutes a hydrogen of a residue with a fluorine atom.
database_cross_reference: PubMed:18688235

Axiom
annotated source: fluorinated residue
annotated property: has_exact_synonym
annotated target: FRes
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: fluorinated residue
annotated property: has_exact_synonym
annotated target: Fluorophenylalanyl
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: fluorinated residue
annotated property: has_related_synonym
annotated target: Fluoro
has_synonym_type: Agreed label from MS community

Axiom
annotated source: fluorinated residue
annotated property: has_related_synonym
annotated target: fluorophenylalanine replacement of phenylalanine
has_synonym_type: Description (full_name) from Unimod

5-iodoacetamidofluorescein
type: Class
subclass of: MOD_00848
subclass of: MOD_00905
definition: modification from Unimod Chemical derivative
diff avg: 388.35
diff formula: C 22 H 14 N 1 O 6
diff mono: 388.08212
formula: C 25 H 19 N 2 O 7 S 1
mass avg: 491.49
mass mono: 491.0913
origin: C
source: artifact
database_cross_reference: Unimod:128
has_obo_namespace: PSI-MOD
has_related_synonym: 5-Iodoacetamidofluorescein (Molecular Probe, Eugene, OR)
has_related_synonym: Fluorescein
id: MOD:00499

Axiom
annotated source: 5-iodoacetamidofluorescein
annotated property: definition
annotated target: modification from Unimod Chemical derivative
database_cross_reference: PubMed:3311742
database_cross_reference: PubMed:3578767
database_cross_reference: Unimod:128#C

Axiom
annotated source: 5-iodoacetamidofluorescein
annotated property: has_related_synonym
annotated target: 5-Iodoacetamidofluorescein (Molecular Probe, Eugene, OR)
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: 5-iodoacetamidofluorescein
annotated property: has_related_synonym
annotated target: Fluorescein
has_synonym_type: Agreed label from MS community

monoiodinated residue
type: Class
subclass of: MOD_00755
definition: A protein modification that effectively substitutes one hydrogen atom of a residue with one iodine atom.
diff avg: 125.9
diff formula: H -1 I 1
diff mono: 125.896645
origin: X
database_cross_reference: Unimod:129
has_exact_synonym: I1Res
has_exact_synonym: Iodination (of Histidine[C4] or Tyrosine[C3])
has_obo_namespace: PSI-MOD
has_related_synonym: Iodination
has_related_synonym: Iodo
id: MOD:00500
in_subset: PSI-MOD-slim
comment: From DeltaMass: Average Mass: 126

Axiom
annotated source: monoiodinated residue
annotated property: definition
annotated target: A protein modification that effectively substitutes one hydrogen atom of a residue with one iodine atom.
database_cross_reference: DeltaMass:0
database_cross_reference: PubMed:15627961
database_cross_reference: PubMed:2026710
database_cross_reference: Unimod:129

Axiom
annotated source: monoiodinated residue
annotated property: has_exact_synonym
annotated target: I1Res
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: monoiodinated residue
annotated property: has_exact_synonym
annotated target: Iodination (of Histidine[C4] or Tyrosine[C3])
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: monoiodinated residue
annotated property: has_related_synonym
annotated target: Iodination
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: monoiodinated residue
annotated property: has_related_synonym
annotated target: Iodo
has_synonym_type: Agreed label from MS community

diiodinated residue
type: Class
subclass of: MOD_00755
definition: A protein modification that effectively substitutes two hydrogen atoms of a residue with two iodine atoms.
diff avg: 251.79
diff formula: H -2 I 2
diff mono: 251.79329
origin: X
database_cross_reference: Unimod:130
has_exact_synonym: I2Res
has_obo_namespace: PSI-MOD
has_related_synonym: Diiodo
has_related_synonym: di-Iodination
id: MOD:00501
in_subset: PSI-MOD-slim
comment: From DeltaMass: Average Mass: 252

Axiom
annotated source: diiodinated residue
annotated property: definition
annotated target: A protein modification that effectively substitutes two hydrogen atoms of a residue with two iodine atoms.
database_cross_reference: Unimod:130

Axiom
annotated source: diiodinated residue
annotated property: has_exact_synonym
annotated target: I2Res
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: diiodinated residue
annotated property: has_related_synonym
annotated target: Diiodo
has_synonym_type: Agreed label from MS community

Axiom
annotated source: diiodinated residue
annotated property: has_related_synonym
annotated target: di-Iodination
has_synonym_type: Description (full_name) from Unimod

triiodinated residue
type: Class
subclass of: MOD_00755
definition: A protein modification that effectively substitutes three hydrogen atoms of a residue with three iodine atoms.
diff avg: 377.69
diff formula: H -3 I 3
diff mono: 377.68994
origin: X
source: artifact
database_cross_reference: Unimod:131
has_exact_synonym: I3Res
has_exact_synonym: triiodinationy
has_obo_namespace: PSI-MOD
has_related_synonym: Triiodo
has_related_synonym: tri-Iodination
id: MOD:00502
in_subset: PSI-MOD-slim
comment: From Unimod. In PubMed:2026710, mono- and diiodination of tyrosine are discussed, but triiodination of tyrosine is not mentioned. In PubMed:15627961, triiodothyronine (see MOD:00186) is discussed, but triiodotyrosine is not mentioned. This modification probably does not exist, and may be a confusion of "tyrosine" for "thyronine", a common error [JSG].

Axiom
annotated source: triiodinated residue
annotated property: definition
annotated target: A protein modification that effectively substitutes three hydrogen atoms of a residue with three iodine atoms.
database_cross_reference: OMSSA:116
database_cross_reference: PubMed:15627961
database_cross_reference: PubMed:2026710
database_cross_reference: Unimod:131

Axiom
annotated source: triiodinated residue
annotated property: has_exact_synonym
annotated target: I3Res
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: triiodinated residue
annotated property: has_exact_synonym
annotated target: triiodinationy
has_synonym_type: Short label from OMSSA

Axiom
annotated source: triiodinated residue
annotated property: has_related_synonym
annotated target: Triiodo
has_synonym_type: Agreed label from MS community

Axiom
annotated source: triiodinated residue
annotated property: has_related_synonym
annotated target: tri-Iodination
has_synonym_type: Description (full_name) from Unimod

N-(cis-delta 5)-tetradecaenoylglycine
type: Class
subclass of: MOD_00908
subclass of: MOD_01696
definition: A protein modification that effectively converts a glycine residue to N-(cis-delta 5)-tetradecaenoylglycine.
diff avg: 208.35
diff formula: C 14 H 24 N 0 O 1
diff mono: 208.18271
formula: C 16 H 27 N 1 O 2
mass avg: 265.4
mass mono: 265.2042
origin: G
source: natural
term spec: N-term
database_cross_reference: Unimod:134
has_exact_synonym: N-(C14:1 aliphatic acyl)glycine
has_exact_synonym: myristoleylation (one double bond)
has_exact_synonym: ntermpepmyristoyeylationg
has_obo_namespace: PSI-MOD
has_related_synonym: (cis-delta 5)-tetradecaenoyl
has_related_synonym: Myristoleyl
id: MOD:00503

Axiom
annotated source: N-(cis-delta 5)-tetradecaenoylglycine
annotated property: definition
annotated target: A protein modification that effectively converts a glycine residue to N-(cis-delta 5)-tetradecaenoylglycine.
database_cross_reference: OMSSA:78
database_cross_reference: PubMed:11955007
database_cross_reference: PubMed:11955008
database_cross_reference: PubMed:1326520
database_cross_reference: PubMed:1386601
database_cross_reference: PubMed:6436247
database_cross_reference: PubMed:7543369
database_cross_reference: RESID:AA0059#var
database_cross_reference: Unimod:134#G

Axiom
annotated source: N-(cis-delta 5)-tetradecaenoylglycine
annotated property: has_exact_synonym
annotated target: N-(C14:1 aliphatic acyl)glycine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: N-(cis-delta 5)-tetradecaenoylglycine
annotated property: has_exact_synonym
annotated target: myristoleylation (one double bond)
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: N-(cis-delta 5)-tetradecaenoylglycine
annotated property: has_exact_synonym
annotated target: ntermpepmyristoyeylationg
has_synonym_type: Short label from OMSSA

Axiom
annotated source: N-(cis-delta 5)-tetradecaenoylglycine
annotated property: has_related_synonym
annotated target: (cis-delta 5)-tetradecaenoyl
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: N-(cis-delta 5)-tetradecaenoylglycine
annotated property: has_related_synonym
annotated target: Myristoleyl
has_synonym_type: Agreed label from MS community

N-(cis,cis-delta 5,delta 8)-tetradecadienoylglycine
type: Class
subclass of: MOD_00908
subclass of: MOD_01696
definition: A protein modification that effectively converts a glycine residue to N-(cis,cis-delta 5,delta 8)-tetradecadienoylglycine.
diff avg: 206.33
diff formula: C 14 H 22 O 1
diff mono: 206.16707
formula: C 16 H 25 N 1 O 2
mass avg: 263.38
mass mono: 263.18854
origin: G
source: natural
term spec: N-term
database_cross_reference: Unimod:135
has_exact_synonym: N-(C14:2 aliphatic acyl)glycine
has_exact_synonym: myristoylation-4H (two double bonds)
has_exact_synonym: ntermpepmyristoyl4hg
has_obo_namespace: PSI-MOD
has_related_synonym: (cis,cis-delta 5, delta 8)-tetradecadienoyl
has_related_synonym: Myristoyl+Delta:H(-4)
id: MOD:00504

Axiom
annotated source: N-(cis,cis-delta 5,delta 8)-tetradecadienoylglycine
annotated property: definition
annotated target: A protein modification that effectively converts a glycine residue to N-(cis,cis-delta 5,delta 8)-tetradecadienoylglycine.
database_cross_reference: OMSSA:79
database_cross_reference: PubMed:11955007
database_cross_reference: PubMed:11955008
database_cross_reference: PubMed:1326520
database_cross_reference: PubMed:1386601
database_cross_reference: PubMed:6436247
database_cross_reference: PubMed:7543369
database_cross_reference: RESID:AA0059#var
database_cross_reference: Unimod:135#G

Axiom
annotated source: N-(cis,cis-delta 5,delta 8)-tetradecadienoylglycine
annotated property: has_exact_synonym
annotated target: N-(C14:2 aliphatic acyl)glycine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: N-(cis,cis-delta 5,delta 8)-tetradecadienoylglycine
annotated property: has_exact_synonym
annotated target: myristoylation-4H (two double bonds)
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: N-(cis,cis-delta 5,delta 8)-tetradecadienoylglycine
annotated property: has_exact_synonym
annotated target: ntermpepmyristoyl4hg
has_synonym_type: Short label from OMSSA

Axiom
annotated source: N-(cis,cis-delta 5,delta 8)-tetradecadienoylglycine
annotated property: has_related_synonym
annotated target: (cis,cis-delta 5, delta 8)-tetradecadienoyl
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: N-(cis,cis-delta 5,delta 8)-tetradecadienoylglycine
annotated property: has_related_synonym
annotated target: Myristoyl+Delta:H(-4)
has_synonym_type: Agreed label from MS community

benzoyl labeling reagent light form (N-term and K)
type: Class
subclass of: MOD_00848
definition: modification from Unimod Isotopic label
diff avg: 104.11
diff formula: C 7 H 4 O 1
diff mono: 104.026215
origin: X
source: artifact
database_cross_reference: Unimod:136
has_exact_synonym: Benzoyl (Bz)
has_obo_namespace: PSI-MOD
has_related_synonym: Benzoyl
has_related_synonym: labeling reagent light form (N-term & K)
id: MOD:00505
comment: From DeltaMass: Average Mass: 104

Axiom
annotated source: benzoyl labeling reagent light form (N-term and K)
annotated property: definition
annotated target: modification from Unimod Isotopic label
database_cross_reference: DeltaMass:0
database_cross_reference: PubMed:15456300
database_cross_reference: Unimod:136

Axiom
annotated source: benzoyl labeling reagent light form (N-term and K)
annotated property: has_exact_synonym
annotated target: Benzoyl (Bz)
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: benzoyl labeling reagent light form (N-term and K)
annotated property: has_related_synonym
annotated target: Benzoyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: benzoyl labeling reagent light form (N-term and K)
annotated property: has_related_synonym
annotated target: labeling reagent light form (N-term & K)
has_synonym_type: Description (full_name) from Unimod

N-linked glycan core N4-glycosylated asparagine
type: Class
subclass of: N4-glycosyl-L-asparagine
subclass of: MOD_00725
definition: modification from Unimod N-linked glycosylation, Hex(5) HexNAc(2)
diff avg: 1217.09
diff formula: C 46 H 76 N 2 O 35
diff mono: 1216.4229
formula: C 50 H 82 N 4 O 37
mass avg: 1331.2
mass mono: 1330.4658
origin: N
source: natural
database_cross_reference: GNO:G02815KT
database_cross_reference: Unimod:137
has_obo_namespace: PSI-MOD
has_related_synonym: Hex(5)HexNAc(2)
has_related_synonym: N-linked glycan core
id: MOD:00506

Axiom
annotated source: N-linked glycan core N4-glycosylated asparagine
annotated property: definition
annotated target: modification from Unimod N-linked glycosylation, Hex(5) HexNAc(2)
database_cross_reference: PubMed:111247
database_cross_reference: PubMed:1694179
database_cross_reference: PubMed:5490222
database_cross_reference: RESID:AA0151#var
database_cross_reference: Unimod:137#N

Axiom
annotated source: N-linked glycan core N4-glycosylated asparagine
annotated property: has_related_synonym
annotated target: Hex(5)HexNAc(2)
has_synonym_type: Agreed label from MS community

Axiom
annotated source: N-linked glycan core N4-glycosylated asparagine
annotated property: has_related_synonym
annotated target: N-linked glycan core
has_synonym_type: Description (full_name) from Unimod

5-dimethylaminonaphthalene-1-sulfonyl
type: Class
definition: OBSOLETE because redundant, replaced by MOD:01653. Remap to MOD:01653.
term replaced by: MOD:01653
diff avg: 233.29
diff formula: C 12 H 11 N 1 O 2 S 1
diff mono: 233.05106
origin: X
source: artifact
database_cross_reference: Unimod:139
has_exact_synonym: Dansyl (Dns)
has_obo_namespace: PSI-MOD
has_related_synonym: 5-dimethylaminonaphthalene-1-sulfonyl
has_related_synonym: Dansyl
id: MOD:00507
comment: From DeltaMass: Average Mass: 233
deprecated: true

Axiom
annotated source: 5-dimethylaminonaphthalene-1-sulfonyl
annotated property: definition
annotated target: OBSOLETE because redundant, replaced by MOD:01653. Remap to MOD:01653.
database_cross_reference: DeltaMass:0
database_cross_reference: Unimod:139

Axiom
annotated source: 5-dimethylaminonaphthalene-1-sulfonyl
annotated property: has_exact_synonym
annotated target: Dansyl (Dns)
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: 5-dimethylaminonaphthalene-1-sulfonyl
annotated property: has_related_synonym
annotated target: 5-dimethylaminonaphthalene-1-sulfonyl
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: 5-dimethylaminonaphthalene-1-sulfonyl
annotated property: has_related_synonym
annotated target: Dansyl
has_synonym_type: Agreed label from MS community

ISD a-series (C-Term)
type: Class
definition: OBSOLETE because this is an ion type and is not a biological or chemical modification to a polypeptide, can be handled by PSI-MS CV term, MS:1001229
origin: X
source: artifact
term spec: C-term
database_cross_reference: Unimod:140
has_obo_namespace: PSI-MOD
has_related_synonym: ISD a-series (C-Term)
has_related_synonym: a-type-ion
id: MOD:00508
comment: Virtual Modification for MS/MS of a-type ions, by decarboxylation of C-terminus as reaction inside the mass spectrometer.
deprecated: true

Axiom
annotated source: ISD a-series (C-Term)
annotated property: definition
annotated target: OBSOLETE because this is an ion type and is not a biological or chemical modification to a polypeptide, can be handled by PSI-MS CV term, MS:1001229
database_cross_reference: PubMed:14588022
database_cross_reference: Unimod:140

Axiom
annotated source: ISD a-series (C-Term)
annotated property: has_related_synonym
annotated target: ISD a-series (C-Term)
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: ISD a-series (C-Term)
annotated property: has_related_synonym
annotated target: a-type-ion
has_synonym_type: Agreed label from MS community

amidination of lysines or N-terminal amines with methyl acetimidate
type: Class
subclass of: MOD_00848
definition: modification from Unimod Chemical derivative
diff avg: 41.05
diff formula: C 2 H 3 N 1
diff mono: 41.02655
origin: X
source: artifact
database_cross_reference: Unimod:141
has_obo_namespace: PSI-MOD
has_related_synonym: Amidine
has_related_synonym: amidination of lysines or N-terminal amines with methyl acetimidate
id: MOD:00509

Axiom
annotated source: amidination of lysines or N-terminal amines with methyl acetimidate
annotated property: definition
annotated target: modification from Unimod Chemical derivative
database_cross_reference: PubMed:12643539
database_cross_reference: PubMed:6273432
database_cross_reference: Unimod:141

Axiom
annotated source: amidination of lysines or N-terminal amines with methyl acetimidate
annotated property: has_related_synonym
annotated target: Amidine
has_synonym_type: Agreed label from MS community

Axiom
annotated source: amidination of lysines or N-terminal amines with methyl acetimidate
annotated property: has_related_synonym
annotated target: amidination of lysines or N-terminal amines with methyl acetimidate
has_synonym_type: Description (full_name) from Unimod

HexNAc1dHex1 N4-glycosylated asparagine
type: Class
subclass of: N4-glycosyl-L-asparagine
subclass of: MOD_00725
definition: modification from Unimod N-linked glycosylation, dHex HexNAc
diff avg: 349.34
diff formula: C 14 H 23 N 1 O 9
diff mono: 349.13727
formula: C 18 H 29 N 3 O 11
mass avg: 463.44
mass mono: 463.1802
origin: N
source: natural
database_cross_reference: GNO:G00194GV
database_cross_reference: Unimod:142
has_exact_synonym: dHexHexNAcN
has_obo_namespace: PSI-MOD
has_related_synonym: HexNAc(1)dHex(1)
has_related_synonym: HexNAc1dHex1
id: MOD:00510

Axiom
annotated source: HexNAc1dHex1 N4-glycosylated asparagine
annotated property: definition
annotated target: modification from Unimod N-linked glycosylation, dHex HexNAc
database_cross_reference: OMSSA:183
database_cross_reference: PubMed:111247
database_cross_reference: PubMed:1694179
database_cross_reference: PubMed:5490222
database_cross_reference: RESID:AA0151#var
database_cross_reference: Unimod:142

Axiom
annotated source: HexNAc1dHex1 N4-glycosylated asparagine
annotated property: has_exact_synonym
annotated target: dHexHexNAcN
has_synonym_type: Short label from OMSSA

Axiom
annotated source: HexNAc1dHex1 N4-glycosylated asparagine
annotated property: has_related_synonym
annotated target: HexNAc(1)dHex(1)
has_synonym_type: Agreed label from MS community

Axiom
annotated source: HexNAc1dHex1 N4-glycosylated asparagine
annotated property: has_related_synonym
annotated target: HexNAc1dHex1
has_synonym_type: Description (full_name) from Unimod

HexNAc2 N4-glycosylated asparagine
type: Class
subclass of: N4-glycosyl-L-asparagine
subclass of: MOD_00725
definition: modification from Unimod N-linked glycosylation, HexNAc(2)
diff avg: 406.39
diff formula: C 16 H 26 N 2 O 10
diff mono: 406.15875
formula: C 20 H 32 N 4 O 12
mass avg: 520.49
mass mono: 520.20166
origin: N
source: natural
database_cross_reference: GNO:G27391WQ
database_cross_reference: Unimod:143
has_obo_namespace: PSI-MOD
has_related_synonym: HexNAc(2)
has_related_synonym: HexNAc2
id: MOD:00511

Axiom
annotated source: HexNAc2 N4-glycosylated asparagine
annotated property: definition
annotated target: modification from Unimod N-linked glycosylation, HexNAc(2)
database_cross_reference: PubMed:111247
database_cross_reference: PubMed:1694179
database_cross_reference: PubMed:5490222
database_cross_reference: RESID:AA0151#var
database_cross_reference: Unimod:143

Axiom
annotated source: HexNAc2 N4-glycosylated asparagine
annotated property: has_related_synonym
annotated target: HexNAc(2)
has_synonym_type: Agreed label from MS community

Axiom
annotated source: HexNAc2 N4-glycosylated asparagine
annotated property: has_related_synonym
annotated target: HexNAc2
has_synonym_type: Description (full_name) from Unimod

Hex3 N4-glycosylated asparagine
type: Class
subclass of: N4-glycosyl-L-asparagine
subclass of: MOD_00725
definition: modification from Unimod N-linked glycosylation, Hex3
diff avg: 486.42
diff formula: C 18 H 30 O 15
diff mono: 486.15848
formula: C 22 H 36 N 2 O 17
mass avg: 600.53
mass mono: 600.2014
origin: N
source: natural
database_cross_reference: GNO:G39365VM
database_cross_reference: Unimod:144
has_obo_namespace: PSI-MOD
has_related_synonym: Hex(3)
has_related_synonym: Hex3
id: MOD:00512

Axiom
annotated source: Hex3 N4-glycosylated asparagine
annotated property: definition
annotated target: modification from Unimod N-linked glycosylation, Hex3
database_cross_reference: PubMed:111247
database_cross_reference: PubMed:1694179
database_cross_reference: PubMed:5490222
database_cross_reference: RESID:AA0151#var
database_cross_reference: Unimod:144

Axiom
annotated source: Hex3 N4-glycosylated asparagine
annotated property: has_related_synonym
annotated target: Hex(3)
has_synonym_type: Agreed label from MS community

Axiom
annotated source: Hex3 N4-glycosylated asparagine
annotated property: has_related_synonym
annotated target: Hex3
has_synonym_type: Description (full_name) from Unimod

HexNAc1dHex2 N4-glycosylated asparagine
type: Class
subclass of: N4-glycosyl-L-asparagine
subclass of: MOD_00725
definition: modification from Unimod N-linked glycosylation, dHex(2) HexNAc
diff avg: 495.48
diff formula: C 20 H 33 N 1 O 13
diff mono: 495.1952
formula: C 24 H 39 N 3 O 15
mass avg: 609.58
mass mono: 609.2381
origin: N
source: natural
database_cross_reference: GNO:G74392IM
database_cross_reference: Unimod:145
has_obo_namespace: PSI-MOD
has_related_synonym: HexNAc(1)dHex(2)
has_related_synonym: HexNAc1dHex2
id: MOD:00513

Axiom
annotated source: HexNAc1dHex2 N4-glycosylated asparagine
annotated property: definition
annotated target: modification from Unimod N-linked glycosylation, dHex(2) HexNAc
database_cross_reference: PubMed:111247
database_cross_reference: PubMed:1694179
database_cross_reference: PubMed:5490222
database_cross_reference: RESID:AA0151#var
database_cross_reference: Unimod:145

Axiom
annotated source: HexNAc1dHex2 N4-glycosylated asparagine
annotated property: has_related_synonym
annotated target: HexNAc(1)dHex(2)
has_synonym_type: Agreed label from MS community

Axiom
annotated source: HexNAc1dHex2 N4-glycosylated asparagine
annotated property: has_related_synonym
annotated target: HexNAc1dHex2
has_synonym_type: Description (full_name) from Unimod

Hex1HexNAc1dHex1 N4-glycosylated asparagine
type: Class
subclass of: N4-glycosyl-L-asparagine
subclass of: MOD_00725
definition: modification from Unimod N-linked glycosylation, dHex Hex HexNAc
diff avg: 511.48
diff formula: C 20 H 33 N 1 O 14
diff mono: 511.1901
formula: C 24 H 39 N 3 O 16
mass avg: 625.58
mass mono: 625.23303
origin: N
source: natural
database_cross_reference: GNO:G54129SE
database_cross_reference: Unimod:146
has_obo_namespace: PSI-MOD
has_related_synonym: Hex(1)HexNAc(1)dHex(1)
has_related_synonym: Hex1HexNAc1dHex1
id: MOD:00514

Axiom
annotated source: Hex1HexNAc1dHex1 N4-glycosylated asparagine
annotated property: definition
annotated target: modification from Unimod N-linked glycosylation, dHex Hex HexNAc
database_cross_reference: PubMed:111247
database_cross_reference: PubMed:1694179
database_cross_reference: PubMed:5490222
database_cross_reference: RESID:AA0151#var
database_cross_reference: Unimod:146

Axiom
annotated source: Hex1HexNAc1dHex1 N4-glycosylated asparagine
annotated property: has_related_synonym
annotated target: Hex(1)HexNAc(1)dHex(1)
has_synonym_type: Agreed label from MS community

Axiom
annotated source: Hex1HexNAc1dHex1 N4-glycosylated asparagine
annotated property: has_related_synonym
annotated target: Hex1HexNAc1dHex1
has_synonym_type: Description (full_name) from Unimod

HexNAc2dHex1 N4-glycosylated asparagine
type: Class
subclass of: N4-glycosyl-L-asparagine
subclass of: MOD_00725
definition: modification from Unimod N-linked glycosylation, dHex HexNAc(2)
diff avg: 552.53
diff formula: C 22 H 36 N 2 O 14
diff mono: 552.2167
formula: C 26 H 42 N 4 O 16
mass avg: 666.63
mass mono: 666.2596
origin: N
source: natural
database_cross_reference: GNO:G06042JP
database_cross_reference: Unimod:147
has_obo_namespace: PSI-MOD
has_related_synonym: HexNAc(2)dHex(1)
has_related_synonym: HexNAc2dHex1
id: MOD:00515

Axiom
annotated source: HexNAc2dHex1 N4-glycosylated asparagine
annotated property: definition
annotated target: modification from Unimod N-linked glycosylation, dHex HexNAc(2)
database_cross_reference: PubMed:111247
database_cross_reference: PubMed:1694179
database_cross_reference: PubMed:5490222
database_cross_reference: RESID:AA0151#var
database_cross_reference: Unimod:147

Axiom
annotated source: HexNAc2dHex1 N4-glycosylated asparagine
annotated property: has_related_synonym
annotated target: HexNAc(2)dHex(1)
has_synonym_type: Agreed label from MS community

Axiom
annotated source: HexNAc2dHex1 N4-glycosylated asparagine
annotated property: has_related_synonym
annotated target: HexNAc2dHex1
has_synonym_type: Description (full_name) from Unimod

Hex1HexNAc2 N4-glycosylated asparagine
type: Class
subclass of: N4-glycosyl-L-asparagine
subclass of: MOD_00725
definition: modification from Unimod N-linked glycosylation
diff avg: 568.53
diff formula: C 22 H 36 N 2 O 15
diff mono: 568.21155
formula: C 26 H 42 N 4 O 17
mass avg: 682.63
mass mono: 682.2545
origin: N
source: natural
database_cross_reference: GNO:G58001LT
database_cross_reference: Unimod:148
has_obo_namespace: PSI-MOD
has_related_synonym: Hex(1)HexNAc(2)
has_related_synonym: Hex1HexNAc2
id: MOD:00516

Axiom
annotated source: Hex1HexNAc2 N4-glycosylated asparagine
annotated property: definition
annotated target: modification from Unimod N-linked glycosylation
database_cross_reference: RESID:AA0151#var
database_cross_reference: Unimod:148

Axiom
annotated source: Hex1HexNAc2 N4-glycosylated asparagine
annotated property: has_related_synonym
annotated target: Hex(1)HexNAc(2)
has_synonym_type: Agreed label from MS community

Axiom
annotated source: Hex1HexNAc2 N4-glycosylated asparagine
annotated property: has_related_synonym
annotated target: Hex1HexNAc2
has_synonym_type: Description (full_name) from Unimod

Hex1HexNAc1NeuAc1 glycosylated residue
type: Class
subclass of: MOD_00725
definition: A protein modification that effectively replaces a hydrogen atom of an amino acid residue or of a modifying group with a carbohydrate-like group composed of Hex1HexNAc1NeuAc1 linked through a glycosidic bond.
diff avg: 657.6
diff formula: C 25 H 41 N 2 O 18
diff mono: 657.2354
origin: X
source: natural
database_cross_reference: GNO:G17015OC
has_exact_synonym: NeuAc-Hex-HexNAc
has_obo_namespace: PSI-MOD
has_related_synonym: Hex(1)HexNAc(1)NeuAc(1)
has_related_synonym: Hex1HexNAc1NeuAc1
id: MOD:00517
comment: From DeltaMass: Average Mass: 657

Axiom
annotated source: Hex1HexNAc1NeuAc1 glycosylated residue
annotated property: definition
annotated target: A protein modification that effectively replaces a hydrogen atom of an amino acid residue or of a modifying group with a carbohydrate-like group composed of Hex1HexNAc1NeuAc1 linked through a glycosidic bond.
database_cross_reference: DeltaMass:0
database_cross_reference: Unimod:149

Axiom
annotated source: Hex1HexNAc1NeuAc1 glycosylated residue
annotated property: has_exact_synonym
annotated target: NeuAc-Hex-HexNAc
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: Hex1HexNAc1NeuAc1 glycosylated residue
annotated property: has_related_synonym
annotated target: Hex(1)HexNAc(1)NeuAc(1)
has_synonym_type: Agreed label from MS community

Axiom
annotated source: Hex1HexNAc1NeuAc1 glycosylated residue
annotated property: has_related_synonym
annotated target: Hex1HexNAc1NeuAc1
has_synonym_type: Description (full_name) from Unimod

HexNAc2dHex2 N4-glycosylated asparagine
type: Class
subclass of: N4-glycosyl-L-asparagine
subclass of: MOD_00725
definition: modification from Unimod N-linked glycosylation
diff avg: 698.67
diff formula: C 28 H 46 N 2 O 18
diff mono: 698.27454
formula: C 32 H 52 N 4 O 20
mass avg: 812.78
mass mono: 812.3175
origin: N
source: natural
database_cross_reference: GNO:G90423UY
database_cross_reference: Unimod:150
has_obo_namespace: PSI-MOD
has_related_synonym: HexNAc(2)dHex(2)
has_related_synonym: HexNAc2dHex2
id: MOD:00518

Axiom
annotated source: HexNAc2dHex2 N4-glycosylated asparagine
annotated property: definition
annotated target: modification from Unimod N-linked glycosylation
database_cross_reference: RESID:AA0151#var
database_cross_reference: Unimod:150

Axiom
annotated source: HexNAc2dHex2 N4-glycosylated asparagine
annotated property: has_related_synonym
annotated target: HexNAc(2)dHex(2)
has_synonym_type: Agreed label from MS community

Axiom
annotated source: HexNAc2dHex2 N4-glycosylated asparagine
annotated property: has_related_synonym
annotated target: HexNAc2dHex2
has_synonym_type: Description (full_name) from Unimod

Hex1HexNAc2Pent1 N4-glycosylated asparagine
type: Class
subclass of: N4-glycosyl-L-asparagine
subclass of: MOD_00725
definition: modification from Unimod N-linked glycosylation
diff avg: 700.64
diff formula: C 27 H 44 N 2 O 19
diff mono: 700.25385
formula: C 31 H 50 N 4 O 21
mass avg: 814.75
mass mono: 814.29675
origin: N
source: natural
database_cross_reference: GNO:G54968WM
database_cross_reference: Unimod:151
has_obo_namespace: PSI-MOD
has_related_synonym: Hex(1)HexNAc(2)Pent(1)
has_related_synonym: Hex1HexNAc2Pent1
id: MOD:00519

Axiom
annotated source: Hex1HexNAc2Pent1 N4-glycosylated asparagine
annotated property: definition
annotated target: modification from Unimod N-linked glycosylation
database_cross_reference: RESID:AA0151#var
database_cross_reference: Unimod:151

Axiom
annotated source: Hex1HexNAc2Pent1 N4-glycosylated asparagine
annotated property: has_related_synonym
annotated target: Hex(1)HexNAc(2)Pent(1)
has_synonym_type: Agreed label from MS community

Axiom
annotated source: Hex1HexNAc2Pent1 N4-glycosylated asparagine
annotated property: has_related_synonym
annotated target: Hex1HexNAc2Pent1
has_synonym_type: Description (full_name) from Unimod

Hex1HexNAc2dHex1 N4-glycosylated asparagine
type: Class
subclass of: N4-glycosyl-L-asparagine
subclass of: MOD_00725
definition: modification from Unimod N-linked glycosylation
diff avg: 714.67
diff formula: C 28 H 46 N 2 O 19
diff mono: 714.2695
formula: C 32 H 52 N 4 O 21
mass avg: 828.77
mass mono: 828.3124
origin: N
source: natural
database_cross_reference: GNO:G94583DZ
database_cross_reference: Unimod:152
has_obo_namespace: PSI-MOD
has_related_synonym: Hex(1)HexNAc(2)dHex(1)
has_related_synonym: Hex1HexNAc2dHex1
id: MOD:00520

Axiom
annotated source: Hex1HexNAc2dHex1 N4-glycosylated asparagine
annotated property: definition
annotated target: modification from Unimod N-linked glycosylation
database_cross_reference: RESID:AA0151#var
database_cross_reference: Unimod:152

Axiom
annotated source: Hex1HexNAc2dHex1 N4-glycosylated asparagine
annotated property: has_related_synonym
annotated target: Hex(1)HexNAc(2)dHex(1)
has_synonym_type: Agreed label from MS community

Axiom
annotated source: Hex1HexNAc2dHex1 N4-glycosylated asparagine
annotated property: has_related_synonym
annotated target: Hex1HexNAc2dHex1
has_synonym_type: Description (full_name) from Unimod

Hex2HexNAc2 N4-glycosylated asparagine
type: Class
subclass of: N4-glycosyl-L-asparagine
subclass of: MOD_00725
definition: modification from Unimod N-linked glycosylation
diff avg: 730.67
diff formula: C 28 H 46 N 2 O 20
diff mono: 730.2644
formula: C 32 H 52 N 4 O 22
mass avg: 844.77
mass mono: 844.3073
origin: N
source: natural
database_cross_reference: GNO:G53434XO
database_cross_reference: Unimod:153
has_obo_namespace: PSI-MOD
has_related_synonym: Hex(2)HexNAc(2)
has_related_synonym: Hex2HexNAc2
id: MOD:00521

Axiom
annotated source: Hex2HexNAc2 N4-glycosylated asparagine
annotated property: definition
annotated target: modification from Unimod N-linked glycosylation
database_cross_reference: RESID:AA0151#var
database_cross_reference: Unimod:153

Axiom
annotated source: Hex2HexNAc2 N4-glycosylated asparagine
annotated property: has_related_synonym
annotated target: Hex(2)HexNAc(2)
has_synonym_type: Agreed label from MS community

Axiom
annotated source: Hex2HexNAc2 N4-glycosylated asparagine
annotated property: has_related_synonym
annotated target: Hex2HexNAc2
has_synonym_type: Description (full_name) from Unimod

Hex3HexNAc1Pent1 N4-glycosylated asparagine
type: Class
subclass of: N4-glycosyl-L-asparagine
subclass of: MOD_00725
definition: modification from Unimod N-linked glycosylation
diff avg: 821.73
diff formula: C 31 H 51 N 1 O 24
diff mono: 821.2801
formula: C 35 H 57 N 3 O 26
mass avg: 935.84
mass mono: 935.32306
origin: N
source: natural
database_cross_reference: GNO:G64686LL
database_cross_reference: Unimod:154
has_obo_namespace: PSI-MOD
has_related_synonym: Hex(3)HexNAc(1)Pent(1)
has_related_synonym: Hex3HexNAc1Pent1
id: MOD:00522

Axiom
annotated source: Hex3HexNAc1Pent1 N4-glycosylated asparagine
annotated property: definition
annotated target: modification from Unimod N-linked glycosylation
database_cross_reference: RESID:AA0151#var
database_cross_reference: Unimod:154

Axiom
annotated source: Hex3HexNAc1Pent1 N4-glycosylated asparagine
annotated property: has_related_synonym
annotated target: Hex(3)HexNAc(1)Pent(1)
has_synonym_type: Agreed label from MS community

Axiom
annotated source: Hex3HexNAc1Pent1 N4-glycosylated asparagine
annotated property: has_related_synonym
annotated target: Hex3HexNAc1Pent1
has_synonym_type: Description (full_name) from Unimod

Hex1HexNAc2dHex1Pent1 N4-glycosylated asparagine
type: Class
subclass of: N4-glycosyl-L-asparagine
subclass of: MOD_00725
definition: modification from Unimod N-linked glycosylation
diff avg: 846.79
diff formula: C 33 H 54 N 2 O 23
diff mono: 846.3117
formula: C 35 H 57 N 3 O 26
mass avg: 960.89
mass mono: 960.3547
origin: N
source: natural
database_cross_reference: GNO:G84825UQ
database_cross_reference: Unimod:155
has_obo_namespace: PSI-MOD
has_related_synonym: Hex(1)HexNAc(2)dHex(1)Pent(1)
has_related_synonym: Hex1HexNAc2dHex1Pent1
id: MOD:00523

Axiom
annotated source: Hex1HexNAc2dHex1Pent1 N4-glycosylated asparagine
annotated property: definition
annotated target: modification from Unimod N-linked glycosylation
database_cross_reference: RESID:AA0151#var
database_cross_reference: Unimod:155

Axiom
annotated source: Hex1HexNAc2dHex1Pent1 N4-glycosylated asparagine
annotated property: has_related_synonym
annotated target: Hex(1)HexNAc(2)dHex(1)Pent(1)
has_synonym_type: Agreed label from MS community

Axiom
annotated source: Hex1HexNAc2dHex1Pent1 N4-glycosylated asparagine
annotated property: has_related_synonym
annotated target: Hex1HexNAc2dHex1Pent1
has_synonym_type: Description (full_name) from Unimod

Hex1HexNAc2dHex2 N4-glycosylated asparagine
type: Class
subclass of: N4-glycosyl-L-asparagine
subclass of: MOD_00725
definition: modification from Unimod N-linked glycosylation
diff avg: 860.81
diff formula: C 34 H 56 N 2 O 23
diff mono: 860.3274
formula: C 38 H 62 N 4 O 25
mass avg: 974.92
mass mono: 974.3703
origin: N
source: natural
database_cross_reference: GNO:G05460KC
database_cross_reference: Unimod:156
has_obo_namespace: PSI-MOD
has_related_synonym: Hex(1)HexNAc(2)dHex(2)
has_related_synonym: Hex1HexNAc2dHex2
id: MOD:00524

Axiom
annotated source: Hex1HexNAc2dHex2 N4-glycosylated asparagine
annotated property: definition
annotated target: modification from Unimod N-linked glycosylation
database_cross_reference: RESID:AA0151#var
database_cross_reference: Unimod:156

Axiom
annotated source: Hex1HexNAc2dHex2 N4-glycosylated asparagine
annotated property: has_related_synonym
annotated target: Hex(1)HexNAc(2)dHex(2)
has_synonym_type: Agreed label from MS community

Axiom
annotated source: Hex1HexNAc2dHex2 N4-glycosylated asparagine
annotated property: has_related_synonym
annotated target: Hex1HexNAc2dHex2
has_synonym_type: Description (full_name) from Unimod

Hex2HexNAc2Pent1 N4-glycosylated asparagine
type: Class
subclass of: N4-glycosyl-L-asparagine
subclass of: MOD_00725
definition: modification from Unimod N-linked glycosylation
diff avg: 862.79
diff formula: C 33 H 54 N 2 O 24
diff mono: 862.30664
formula: C 37 H 60 N 4 O 26
mass avg: 976.89
mass mono: 976.34955
origin: N
source: natural
database_cross_reference: GNO:G18999EB
database_cross_reference: Unimod:157
has_obo_namespace: PSI-MOD
has_related_synonym: Hex(2)HexNAc(2)Pent(1)
has_related_synonym: Hex2HexNAc2Pent1
id: MOD:00525

Axiom
annotated source: Hex2HexNAc2Pent1 N4-glycosylated asparagine
annotated property: definition
annotated target: modification from Unimod N-linked glycosylation
database_cross_reference: RESID:AA0151#var
database_cross_reference: Unimod:157

Axiom
annotated source: Hex2HexNAc2Pent1 N4-glycosylated asparagine
annotated property: has_related_synonym
annotated target: Hex(2)HexNAc(2)Pent(1)
has_synonym_type: Agreed label from MS community

Axiom
annotated source: Hex2HexNAc2Pent1 N4-glycosylated asparagine
annotated property: has_related_synonym
annotated target: Hex2HexNAc2Pent1
has_synonym_type: Description (full_name) from Unimod

Hex2HexNAc2dHex1 N4-glycosylated asparagine
type: Class
subclass of: N4-glycosyl-L-asparagine
subclass of: MOD_00725
definition: modification from Unimod N-linked glycosylation
diff avg: 876.81
diff formula: C 34 H 56 N 2 O 24
diff mono: 876.3223
formula: C 38 H 62 N 4 O 26
mass avg: 990.92
mass mono: 990.36523
origin: N
source: natural
database_cross_reference: GNO:G93579XB
database_cross_reference: Unimod:158
has_obo_namespace: PSI-MOD
has_related_synonym: Hex(2)HexNAc(2)dHex(1)
has_related_synonym: Hex2HexNAc2dHex1
id: MOD:00526

Axiom
annotated source: Hex2HexNAc2dHex1 N4-glycosylated asparagine
annotated property: definition
annotated target: modification from Unimod N-linked glycosylation
database_cross_reference: RESID:AA0151#var
database_cross_reference: Unimod:158

Axiom
annotated source: Hex2HexNAc2dHex1 N4-glycosylated asparagine
annotated property: has_related_synonym
annotated target: Hex(2)HexNAc(2)dHex(1)
has_synonym_type: Agreed label from MS community

Axiom
annotated source: Hex2HexNAc2dHex1 N4-glycosylated asparagine
annotated property: has_related_synonym
annotated target: Hex2HexNAc2dHex1
has_synonym_type: Description (full_name) from Unimod

Hex3HexNAc2 N4-glycosylated asparagine
type: Class
subclass of: N4-glycosyl-L-asparagine
subclass of: MOD_00725
definition: modification from Unimod N-linked glycosylation
diff avg: 892.81
diff formula: C 34 H 56 N 2 O 25
diff mono: 892.3172
formula: C 38 H 62 N 4 O 27
mass avg: 1006.92
mass mono: 1006.36017
origin: N
source: natural
database_cross_reference: GNO:G28681TP
database_cross_reference: Unimod:159
has_exact_synonym: (Hex)3-HexNAc-HexNAc
has_obo_namespace: PSI-MOD
has_related_synonym: Hex(3)HexNAc(2)
has_related_synonym: Hex3HexNAc2
id: MOD:00527
comment: From DeltaMass: Average Mass: 893

Axiom
annotated source: Hex3HexNAc2 N4-glycosylated asparagine
annotated property: definition
annotated target: modification from Unimod N-linked glycosylation
database_cross_reference: DeltaMass:0
database_cross_reference: RESID:AA0151#var
database_cross_reference: Unimod:159

Axiom
annotated source: Hex3HexNAc2 N4-glycosylated asparagine
annotated property: has_exact_synonym
annotated target: (Hex)3-HexNAc-HexNAc
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: Hex3HexNAc2 N4-glycosylated asparagine
annotated property: has_related_synonym
annotated target: Hex(3)HexNAc(2)
has_synonym_type: Agreed label from MS community

Axiom
annotated source: Hex3HexNAc2 N4-glycosylated asparagine
annotated property: has_related_synonym
annotated target: Hex3HexNAc2
has_synonym_type: Description (full_name) from Unimod

Hex1HexNAc1NeuAc2 glycosylated residue
type: Class
subclass of: MOD_00725
definition: A protein modification that effectively replaces a hydrogen atom of an amino acid residue or of a modifying group with a carbohydrate-like group composed of Hex1HexNAc1NeuAc2 linked through a glycosidic bond.
diff avg: 947.85
diff formula: C 36 H 57 N 3 O 26
diff mono: 947.32306
origin: X
source: natural
database_cross_reference: GNO:G23729WG
database_cross_reference: Unimod:160
has_obo_namespace: PSI-MOD
has_related_synonym: Hex(1)HexNAc(1)NeuAc(2)
has_related_synonym: Hex1HexNAc1NeuAc2
id: MOD:00528

Axiom
annotated source: Hex1HexNAc1NeuAc2 glycosylated residue
annotated property: definition
annotated target: A protein modification that effectively replaces a hydrogen atom of an amino acid residue or of a modifying group with a carbohydrate-like group composed of Hex1HexNAc1NeuAc2 linked through a glycosidic bond.
database_cross_reference: Unimod:160

Axiom
annotated source: Hex1HexNAc1NeuAc2 glycosylated residue
annotated property: has_related_synonym
annotated target: Hex(1)HexNAc(1)NeuAc(2)
has_synonym_type: Agreed label from MS community

Axiom
annotated source: Hex1HexNAc1NeuAc2 glycosylated residue
annotated property: has_related_synonym
annotated target: Hex1HexNAc1NeuAc2
has_synonym_type: Description (full_name) from Unimod

Hex3HexNAc2P1 N4-glycosylated asparagine
type: Class
subclass of: N4-glycosyl-L-asparagine
subclass of: MOD_00725
definition: modification from Unimod N-linked glycosylation
diff avg: 972.79
diff formula: C 34 H 57 N 2 O 28 P 1
diff mono: 972.28357
formula: C 38 H 63 N 4 O 30 P 1
mass avg: 1086.89
mass mono: 1086.3264
origin: N
source: natural
database_cross_reference: GNO:G88520YF
database_cross_reference: Unimod:161
has_obo_namespace: PSI-MOD
has_related_synonym: Hex(3)HexNAc(2)P(1)
has_related_synonym: Hex3HexNAc2P1
id: MOD:00529

Axiom
annotated source: Hex3HexNAc2P1 N4-glycosylated asparagine
annotated property: definition
annotated target: modification from Unimod N-linked glycosylation
database_cross_reference: RESID:AA0151#var
database_cross_reference: Unimod:161

Axiom
annotated source: Hex3HexNAc2P1 N4-glycosylated asparagine
annotated property: has_related_synonym
annotated target: Hex(3)HexNAc(2)P(1)
has_synonym_type: Agreed label from MS community

Axiom
annotated source: Hex3HexNAc2P1 N4-glycosylated asparagine
annotated property: has_related_synonym
annotated target: Hex3HexNAc2P1
has_synonym_type: Description (full_name) from Unimod

L-selenomethionine
type: Class
subclass of: selenium substitution for sulfur
subclass of: MOD_00913
definition: A protein modification that effectively converts an L-methionine residue to L-selenomethionine.
diff avg: 46.91
diff formula: C 0 H 0 N 0 S -1 Se 1
diff mono: 47.94445
formula: C 5 H 9 N 1 O 1 Se 1
mass avg: 178.1
mass mono: 178.98494
origin: M
source: artifact
database_cross_reference: Unimod:162
has_exact_synonym: Se(S)Met
has_exact_synonym: semetm
has_obo_namespace: PSI-MOD
has_related_synonym: Delta:S(-1)Se(1)
has_related_synonym: Selenium replaces sulphur
id: MOD:00530

Axiom
annotated source: L-selenomethionine
annotated property: definition
annotated target: A protein modification that effectively converts an L-methionine residue to L-selenomethionine.
database_cross_reference: OMSSA:113
database_cross_reference: PubMed:12148805
database_cross_reference: Unimod:162#M

Axiom
annotated source: L-selenomethionine
annotated property: has_exact_synonym
annotated target: Se(S)Met
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-selenomethionine
annotated property: has_exact_synonym
annotated target: semetm
has_synonym_type: Short label from OMSSA

Axiom
annotated source: L-selenomethionine
annotated property: has_related_synonym
annotated target: Delta:S(-1)Se(1)
has_synonym_type: Agreed label from MS community

Axiom
annotated source: L-selenomethionine
annotated property: has_related_synonym
annotated target: Selenium replaces sulphur
has_synonym_type: Description (full_name) from Unimod

(18)O labeled deglycosylated asparagine
type: Class
subclass of: MOD_01293
definition: A protein modification that effectively converts an L-asparagine residue to L-aspartic acid with one (18)O as the result of having been deglycosylated in (18)O water.
diff avg: 2.99
diff formula: H -1 N -1 (18)O 1
diff mono: 2.988262
formula: C 4 H 5 N 1 (16)O 2 (18)O 1
mass avg: 117.03
mass mono: 117.03119
origin: N
source: artifact
database_cross_reference: Unimod:170
has_obo_namespace: PSI-MOD
has_related_synonym: Delta:H(1)O(-1)18O(1)
has_related_synonym: glycosylated asparagine 18O labeling
id: MOD:00531
in_subset: PSI-MOD-slim

Axiom
annotated source: (18)O labeled deglycosylated asparagine
annotated property: definition
annotated target: A protein modification that effectively converts an L-asparagine residue to L-aspartic acid with one (18)O as the result of having been deglycosylated in (18)O water.
database_cross_reference: PubMed:14435542
database_cross_reference: Unimod:170

Axiom
annotated source: (18)O labeled deglycosylated asparagine
annotated property: has_related_synonym
annotated target: Delta:H(1)O(-1)18O(1)
has_synonym_type: Agreed label from MS community

Axiom
annotated source: (18)O labeled deglycosylated asparagine
annotated property: has_related_synonym
annotated target: glycosylated asparagine 18O labeling
has_synonym_type: Description (full_name) from Unimod

Shimadzu 13CNBS
type: Class
subclass of: MOD_01426
definition: modification from Unimod Chemical derivative
diff avg: 159.01
diff formula: (13)C 6 H 3 N 1 O 2 S 1
diff mono: 159.00858
formula: (12)C 11 (13)C 6 H 13 N 3 O 3 S 1
mass avg: 345.09
mass mono: 345.0879
origin: W
source: artifact
database_cross_reference: Unimod:171
has_obo_namespace: PSI-MOD
has_related_synonym: NBS:13C(6)
has_related_synonym: Shimadzu NBS-13C
id: MOD:00532

Axiom
annotated source: Shimadzu 13CNBS
annotated property: definition
annotated target: modification from Unimod Chemical derivative
database_cross_reference: PubMed:12845591
database_cross_reference: Unimod:171

Axiom
annotated source: Shimadzu 13CNBS
annotated property: has_related_synonym
annotated target: NBS:13C(6)
has_synonym_type: Interim label from Unimod

Axiom
annotated source: Shimadzu 13CNBS
annotated property: has_related_synonym
annotated target: Shimadzu NBS-13C
has_synonym_type: Description (full_name) from Unimod

Shimadzu 12CNBS
type: Class
subclass of: MOD_01426
definition: modification from Unimod Chemical derivative
diff avg: 152.99
diff formula: (12)C 6 H 3 N 1 O 2 S 1
diff mono: 152.98845
formula: (12)C 17 H 13 N 3 O 3 S 1
mass avg: 339.07
mass mono: 339.06775
origin: W
source: artifact
database_cross_reference: Unimod:172
has_obo_namespace: PSI-MOD
has_related_synonym: NBS
has_related_synonym: Shimadzu NBS-12C
id: MOD:00533

Axiom
annotated source: Shimadzu 12CNBS
annotated property: definition
annotated target: modification from Unimod Chemical derivative
database_cross_reference: PubMed:12845591
database_cross_reference: Unimod:172

Axiom
annotated source: Shimadzu 12CNBS
annotated property: has_related_synonym
annotated target: NBS
has_synonym_type: Interim label from Unimod

Axiom
annotated source: Shimadzu 12CNBS
annotated property: has_related_synonym
annotated target: Shimadzu NBS-12C
has_synonym_type: Description (full_name) from Unimod

Michael addition of BHT quinone methide to cysteine and lysine
type: Class
subclass of: MOD_00848
definition: modification from Unimod Post-translational
diff avg: 218.34
diff formula: C 15 H 22 O 1
diff mono: 218.16707
origin: X
source: artifact
database_cross_reference: Unimod:176
has_obo_namespace: PSI-MOD
has_related_synonym: BHT
has_related_synonym: Michael addition of BHT quinone methide to Cysteine and Lysine
id: MOD:00534
comment: Butylated Hydroxytoluene adduct.

Axiom
annotated source: Michael addition of BHT quinone methide to cysteine and lysine
annotated property: definition
annotated target: modification from Unimod Post-translational
database_cross_reference: PubMed:9448752
database_cross_reference: Unimod:176

Axiom
annotated source: Michael addition of BHT quinone methide to cysteine and lysine
annotated property: has_related_synonym
annotated target: BHT
has_synonym_type: Agreed label from MS community

Axiom
annotated source: Michael addition of BHT quinone methide to cysteine and lysine
annotated property: has_related_synonym
annotated target: Michael addition of BHT quinone methide to Cysteine and Lysine
has_synonym_type: Description (full_name) from Unimod

phosphorylation to amine thiol
type: Class
subclass of: MOD_00848
definition: modification from Unimod Chemical derivative
diff avg: 87.18
diff formula: C 4 H 9 N 1 O -1 S 1
diff mono: 87.05066
origin: X
source: artifact
database_cross_reference: Unimod:178
has_obo_namespace: PSI-MOD
has_related_synonym: DAET
has_related_synonym: phosphorylation to amine thiol
id: MOD:00535
comment: DAET = 2-(dimethylamino)ethanethiol. The phosphorylation to amine is the beta elimination of phosphate and Michael addition of 2-(dimethylamino)ethanethiol to the site.

Axiom
annotated source: phosphorylation to amine thiol
annotated property: definition
annotated target: modification from Unimod Chemical derivative
database_cross_reference: PubMed:12216740
database_cross_reference: Unimod:178

Axiom
annotated source: phosphorylation to amine thiol
annotated property: has_related_synonym
annotated target: DAET
has_synonym_type: Agreed label from MS community

Axiom
annotated source: phosphorylation to amine thiol
annotated property: has_related_synonym
annotated target: phosphorylation to amine thiol
has_synonym_type: Description (full_name) from Unimod

L-serine to L-alanine replacement
type: Class
definition: OBSOLETE because Unimod 179 merged with Unimod 447 remap to ??? a protein modification that replaces an L-serine residue with an L-alanine residue
diff avg: -16.0
diff formula: O -1
diff mono: -15.994915
origin: S
source: artifact
database_cross_reference: Unimod:179
has_exact_synonym: Ser_Ala
has_obo_namespace: PSI-MOD
id: MOD:00536
deprecated: true

Axiom
annotated source: L-serine to L-alanine replacement
annotated property: definition
annotated target: OBSOLETE because Unimod 179 merged with Unimod 447 remap to ??? a protein modification that replaces an L-serine residue with an L-alanine residue
database_cross_reference: Unimod:179

Axiom
annotated source: L-serine to L-alanine replacement
annotated property: has_exact_synonym
annotated target: Ser_Ala
has_synonym_type: Short label curated by PSI-MOD

L-alanine residue (Thr)
type: Class
subclass of: MOD_00917
definition: A protein modification that effectively converts an L-threonine residue to L-alanine.
diff avg: -30.03
diff formula: C -1 H -2 O -1
diff mono: -30.010565
formula: C 3 H 5 N 1 O 1
mass avg: 71.08
mass mono: 71.03712
origin: T
database_cross_reference: Unimod:659
has_exact_synonym: Thr(Ala)
has_obo_namespace: PSI-MOD
has_related_synonym: Thr->Ala
has_related_synonym: Thr->Ala substitution
id: MOD:00537
comment: This could represent either an engineered replacement or a chemical modification.

Axiom
annotated source: L-alanine residue (Thr)
annotated property: definition
annotated target: A protein modification that effectively converts an L-threonine residue to L-alanine.
database_cross_reference: Unimod:659

Axiom
annotated source: L-alanine residue (Thr)
annotated property: has_exact_synonym
annotated target: Thr(Ala)
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: L-alanine residue (Thr)
annotated property: has_related_synonym
annotated target: Thr->Ala
has_synonym_type: Interim label from Unimod

Axiom
annotated source: L-alanine residue (Thr)
annotated property: has_related_synonym
annotated target: Thr->Ala substitution
has_synonym_type: Description (full_name) from Unimod

protein modification categorized by isobaric sets
type: Class
subclass of: protein modification
definition: Modified amino acid residues groups into isobaric sets at particular mass resolution cut-offs.
has_obo_namespace: PSI-MOD
id: MOD:00538
in_subset: PSI-MOD-slim

Axiom
annotated source: protein modification categorized by isobaric sets
annotated property: definition
annotated target: Modified amino acid residues groups into isobaric sets at particular mass resolution cut-offs.
database_cross_reference: PubMed:18688235

threonine reduced to aminobutynate
type: Class
definition: OBSOLETE because Unimod 179 merged wth Unimod 447 remap to ??? modification from Unimod O-linked glycosylation
diff avg: -17.01
diff formula: H -1 O -1
diff mono: -17.00274
origin: T
source: artifact
database_cross_reference: Unimod:182
has_obo_namespace: PSI-MOD
id: MOD:00539
deprecated: true

Axiom
annotated source: threonine reduced to aminobutynate
annotated property: definition
annotated target: OBSOLETE because Unimod 179 merged wth Unimod 447 remap to ??? modification from Unimod O-linked glycosylation
database_cross_reference: Unimod:182

9x(13)C labeled residue
type: Class
subclass of: MOD_00842
definition: A protein modification that effectively converts a residue containing common isotopes to a 9x(13)C labeled residue.
diff avg: 9.03
diff formula: (12)C -9 (13)C 9
diff mono: 9.030194
origin: X
source: artifact
database_cross_reference: Unimod:184
has_obo_namespace: PSI-MOD
has_related_synonym: 13C(9) Silac label
has_related_synonym: Label:13C(9)
id: MOD:00540

Axiom
annotated source: 9x(13)C labeled residue
annotated property: definition
annotated target: A protein modification that effectively converts a residue containing common isotopes to a 9x(13)C labeled residue.
database_cross_reference: PubMed:12716131
database_cross_reference: Unimod:184

Axiom
annotated source: 9x(13)C labeled residue
annotated property: has_related_synonym
annotated target: 13C(9) Silac label
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: 9x(13)C labeled residue
annotated property: has_related_synonym
annotated target: Label:13C(9)
has_synonym_type: Agreed label from MS community

9x(13)C labeled L-phosphotyrosine
type: Class
subclass of: MOD_00842
subclass of: MOD_00919
subclass of: Restriction
  on property: derives from
  some values from: O4'-phospho-L-tyrosine
subclass of: Restriction
  on property: derives from
  some values from: 9x(13)C labeled residue
definition: A protein modification that effectively converts an L-tyrosine residue to 9x(13)C labeled L-phosphotyrosine.
diff avg: 89.0
diff formula: (12)C -9 (13)C 9 H 1 O 3 P 1
diff mono: 88.99652
formula: (13)C 9 H 10 N 1 O 5 P 1
mass avg: 252.06
mass mono: 252.05986
origin: Y
source: artifact
database_cross_reference: Unimod:185
has_obo_namespace: PSI-MOD
has_related_synonym: C13 label (Phosphotyrosine)
has_related_synonym: Label:13C(9)+Phospho
id: MOD:00541

Axiom
annotated source: 9x(13)C labeled L-phosphotyrosine
annotated property: definition
annotated target: A protein modification that effectively converts an L-tyrosine residue to 9x(13)C labeled L-phosphotyrosine.
database_cross_reference: PubMed:12716131
database_cross_reference: Unimod:185

Axiom
annotated source: 9x(13)C labeled L-phosphotyrosine
annotated property: has_related_synonym
annotated target: C13 label (Phosphotyrosine)
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: 9x(13)C labeled L-phosphotyrosine
annotated property: has_related_synonym
annotated target: Label:13C(9)+Phospho
has_synonym_type: Agreed label from MS community

hydroxyphenylglyoxal arginine
type: Class
subclass of: MOD_00848
subclass of: MOD_00902
definition: modification from Unimod Chemical derivative
diff avg: 132.12
diff formula: C 8 H 4 O 2
diff mono: 132.02113
formula: C 14 H 16 N 4 O 3
mass avg: 288.31
mass mono: 288.12225
origin: R
source: artifact
database_cross_reference: Unimod:186
has_obo_namespace: PSI-MOD
has_related_synonym: HPG
has_related_synonym: Hydroxyphenylglyoxal arginine
id: MOD:00542

Axiom
annotated source: hydroxyphenylglyoxal arginine
annotated property: definition
annotated target: modification from Unimod Chemical derivative
database_cross_reference: PubMed:11698400
database_cross_reference: PubMed:11914093
database_cross_reference: Unimod:186

Axiom
annotated source: hydroxyphenylglyoxal arginine
annotated property: has_related_synonym
annotated target: HPG
has_synonym_type: Agreed label from MS community

Axiom
annotated source: hydroxyphenylglyoxal arginine
annotated property: has_related_synonym
annotated target: Hydroxyphenylglyoxal arginine
has_synonym_type: Description (full_name) from Unimod

bis(hydroxyphenylglyoxal) arginine
type: Class
subclass of: MOD_00848
subclass of: MOD_00902
definition: modification from Unimod Chemical derivative
diff avg: 282.25
diff formula: C 16 H 10 O 5
diff mono: 282.05283
formula: C 22 H 22 N 4 O 6
mass avg: 438.44
mass mono: 438.15393
origin: R
source: artifact
database_cross_reference: Unimod:187
has_obo_namespace: PSI-MOD
has_related_synonym: 2HPG
has_related_synonym: bis(hydroxphenylglyoxal) arginine
id: MOD:00543
comment: OH-PGO and PGO react with arginine at a stoichiometry of 2:1 [Unimod].

Axiom
annotated source: bis(hydroxyphenylglyoxal) arginine
annotated property: definition
annotated target: modification from Unimod Chemical derivative
database_cross_reference: PubMed:11698400
database_cross_reference: Unimod:187

Axiom
annotated source: bis(hydroxyphenylglyoxal) arginine
annotated property: has_related_synonym
annotated target: 2HPG
has_synonym_type: Agreed label from MS community

Axiom
annotated source: bis(hydroxyphenylglyoxal) arginine
annotated property: has_related_synonym
annotated target: bis(hydroxphenylglyoxal) arginine
has_synonym_type: Description (full_name) from Unimod

6x(13)C labeled residue
type: Class
subclass of: MOD_00842
definition: A protein modification that effectively converts a residue containing common isotopes to a 6x(13)C labeled residue.
diff avg: 6.02
diff formula: (12)C -6 (13)C 6
diff mono: 6.020129
origin: X
source: artifact
database_cross_reference: Unimod:188
has_obo_namespace: PSI-MOD
has_related_synonym: 13C(6) Silac label
has_related_synonym: Label:13C(6)
id: MOD:00544
in_subset: PSI-MOD-slim

Axiom
annotated source: 6x(13)C labeled residue
annotated property: definition
annotated target: A protein modification that effectively converts a residue containing common isotopes to a 6x(13)C labeled residue.
database_cross_reference: PubMed:12716131
database_cross_reference: Unimod:188

Axiom
annotated source: 6x(13)C labeled residue
annotated property: has_related_synonym
annotated target: 13C(6) Silac label
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: 6x(13)C labeled residue
annotated property: has_related_synonym
annotated target: Label:13C(6)
has_synonym_type: Agreed label from MS community

deuterated dimethyl labeling (D)
type: Class
definition: OBSOLETE because redundant with MOD:00927. Remap to MOD:00927.
term replaced by: MOD:00927
origin: X
source: artifact
term spec: N-term
has_obo_namespace: PSI-MOD
id: MOD:00545
deprecated: true

Axiom
annotated source: deuterated dimethyl labeling (D)
annotated property: definition
annotated target: OBSOLETE because redundant with MOD:00927. Remap to MOD:00927.
database_cross_reference: PubMed:14670044

(18)O label at both C-terminal oxygens
type: Class
subclass of: MOD_00847
definition: A protein modification that effectively substitutes two (18)O atom for the two (16)O atoms of an alpha-carboxyl (1-carboxyl) group.
diff avg: 4.01
diff formula: (16)O -2 (18)O 2
diff mono: 4.008493
origin: X
source: artifact
term spec: C-term
database_cross_reference: Unimod:193
has_exact_synonym: ctermpepdio18
has_obo_namespace: PSI-MOD
has_related_synonym: Label:18O(2)
has_related_synonym: O18 label at both C-terminal oxygens
id: MOD:00546
in_subset: PSI-MOD-slim

Axiom
annotated source: (18)O label at both C-terminal oxygens
annotated property: definition
annotated target: A protein modification that effectively substitutes two (18)O atom for the two (16)O atoms of an alpha-carboxyl (1-carboxyl) group.
database_cross_reference: OMSSA:88
database_cross_reference: PubMed:11467524
database_cross_reference: Unimod:193

Axiom
annotated source: (18)O label at both C-terminal oxygens
annotated property: has_exact_synonym
annotated target: ctermpepdio18
has_synonym_type: Short label from OMSSA

Axiom
annotated source: (18)O label at both C-terminal oxygens
annotated property: has_related_synonym
annotated target: Label:18O(2)
has_synonym_type: Agreed label from MS community

Axiom
annotated source: (18)O label at both C-terminal oxygens
annotated property: has_related_synonym
annotated target: O18 label at both C-terminal oxygens
has_synonym_type: Description (full_name) from Unimod

6-aminoquinolyl-N-hydroxysuccinimidyl carbamate
type: Class
subclass of: MOD_00848
definition: modification from Unimod Chemical derivative used for amino acid analysis
diff avg: 170.17
diff formula: C 10 H 6 N 2 O 1
diff mono: 170.04802
origin: X
source: artifact
database_cross_reference: Unimod:194
has_obo_namespace: PSI-MOD
has_related_synonym: 6-aminoquinolyl-N-hydroxysuccinimidyl carbamate
has_related_synonym: AccQTag
id: MOD:00547

Axiom
annotated source: 6-aminoquinolyl-N-hydroxysuccinimidyl carbamate
annotated property: definition
annotated target: modification from Unimod Chemical derivative used for amino acid analysis
database_cross_reference: PubMed:14997490
database_cross_reference: Unimod:194

Axiom
annotated source: 6-aminoquinolyl-N-hydroxysuccinimidyl carbamate
annotated property: has_related_synonym
annotated target: 6-aminoquinolyl-N-hydroxysuccinimidyl carbamate
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: 6-aminoquinolyl-N-hydroxysuccinimidyl carbamate
annotated property: has_related_synonym
annotated target: AccQTag
has_synonym_type: Agreed label from MS community

APTA
type: Class
subclass of: MOD_00848
definition: modification from Unimod Chemical derivative
diff avg: 171.26
diff formula: C 9 H 19 N 2 O 1
diff mono: 171.14973
formula: C 12 H 24 N 3 O 2 S 1
mass avg: 274.4
mass mono: 274.15894
origin: C
source: artifact
database_cross_reference: Unimod:195
has_obo_namespace: PSI-MOD
has_related_synonym: APTA-d0
has_related_synonym: QAT
id: MOD:00548
comment: Derivatization of cysteine with 3-acrylamidopropyl)trimethylammonium chloride [JSG].

Axiom
annotated source: APTA
annotated property: definition
annotated target: modification from Unimod Chemical derivative
database_cross_reference: PubMed:15283597
database_cross_reference: Unimod:195

Axiom
annotated source: APTA
annotated property: has_related_synonym
annotated target: APTA-d0
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: APTA
annotated property: has_related_synonym
annotated target: QAT
has_synonym_type: Agreed label from MS community

APTA d3
type: Class
subclass of: MOD_01431
definition: modification from Unimod Isotopic label
diff avg: 174.17
diff formula: C 9 (1)H 16 (2)H 3 N 2 O 1
diff mono: 174.16856
formula: C 12 (1)H 21 (2)H 3 N 3 O 2 S 1
mass avg: 277.18
mass mono: 277.17776
origin: C
source: artifact
database_cross_reference: Unimod:196
has_obo_namespace: PSI-MOD
has_related_synonym: (3-acrylamidopropyl)trimethylammonium
has_related_synonym: APTA d3
has_related_synonym: QAT:2H(3)
id: MOD:00549
comment: Derivatization of cysteine with 3-acrylamidopropyl)trimethylammonium chloride (difference formula correct) [JSG].

Axiom
annotated source: APTA d3
annotated property: definition
annotated target: modification from Unimod Isotopic label
database_cross_reference: PubMed:15283597
database_cross_reference: Unimod:196

Axiom
annotated source: APTA d3
annotated property: has_related_synonym
annotated target: (3-acrylamidopropyl)trimethylammonium
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: APTA d3
annotated property: has_related_synonym
annotated target: APTA d3
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: APTA d3
annotated property: has_related_synonym
annotated target: QAT:2H(3)
has_synonym_type: Agreed label from MS community

EAPTA d0
type: Class
subclass of: MOD_01426
definition: modification from Unimod Chemical derivative
diff avg: 184.28
diff formula: C 10 H 20 N 2 O 1
diff mono: 184.15756
formula: C 13 H 25 N 3 O 2 S 1
mass avg: 287.42
mass mono: 287.16675
origin: C
source: artifact
database_cross_reference: Unimod:197
has_obo_namespace: PSI-MOD
has_related_synonym: EAPTA d0
has_related_synonym: EQAT
id: MOD:00550

Axiom
annotated source: EAPTA d0
annotated property: definition
annotated target: modification from Unimod Chemical derivative
database_cross_reference: Unimod:197

Axiom
annotated source: EAPTA d0
annotated property: has_related_synonym
annotated target: EAPTA d0
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: EAPTA d0
annotated property: has_related_synonym
annotated target: EQAT
has_synonym_type: Agreed label from MS community

EAPTA d5
type: Class
subclass of: MOD_01431
definition: modification from Unimod Isotopic label
diff avg: 189.19
diff formula: C 10 (1)H 15 (2)H 5 N 2 O 1
diff mono: 189.18895
formula: C 13 (1)H 20 (2)H 5 N 3 O 2 S 1
mass avg: 292.2
mass mono: 292.19812
origin: C
source: artifact
database_cross_reference: Unimod:198
has_obo_namespace: PSI-MOD
has_related_synonym: EAPTA d5
has_related_synonym: EQAT:2H(5)
id: MOD:00551

Axiom
annotated source: EAPTA d5
annotated property: definition
annotated target: modification from Unimod Isotopic label
database_cross_reference: Unimod:198

Axiom
annotated source: EAPTA d5
annotated property: has_related_synonym
annotated target: EAPTA d5
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: EAPTA d5
annotated property: has_related_synonym
annotated target: EQAT:2H(5)
has_synonym_type: Agreed label from MS community

4x(2)H labeled dimethylated residue
type: Class
subclass of: MOD_00839
definition: A protein modification that effectively converts a residue containing common isotopes to a 4x(2)H labeled dimethylated residue.
diff avg: 32.06
diff formula: C 2 (2)H 4
diff mono: 32.056408
origin: X
source: artifact
database_cross_reference: Unimod:199
has_obo_namespace: PSI-MOD
has_related_synonym: DiMethyl-CHD2
has_related_synonym: Dimethyl:2H(4)
id: MOD:00552
in_subset: PSI-MOD-slim
comment: Supposed to be alpha-amino and Lys-N6 derivatized by C(2)H2O and reduction.

Axiom
annotated source: 4x(2)H labeled dimethylated residue
annotated property: definition
annotated target: A protein modification that effectively converts a residue containing common isotopes to a 4x(2)H labeled dimethylated residue.
database_cross_reference: PubMed:14670044
database_cross_reference: Unimod:199

Axiom
annotated source: 4x(2)H labeled dimethylated residue
annotated property: has_related_synonym
annotated target: DiMethyl-CHD2
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: 4x(2)H labeled dimethylated residue
annotated property: has_related_synonym
annotated target: Dimethyl:2H(4)
has_synonym_type: Agreed label from MS community

1,2-ethanedithiol modified residue
type: Class
subclass of: MOD_00848
definition: A protein modification that effectively substitutes a (2-sulfanylethyl)sulfanyl (or thioethylthiol) group for a hydroxy group.
diff avg: 76.18
diff formula: C 2 H 4 O -1 S 2
diff mono: 75.98053
origin: X
source: artifact
database_cross_reference: Unimod:200
has_exact_synonym: 1,2-ethanedithiol (EDT)
has_obo_namespace: PSI-MOD
has_related_synonym: EDT
has_related_synonym: Ethanedithiol
id: MOD:00553
comment: From DeltaMass: Average Mass: 93; supposed to be derivatization of serine and threonine.

Axiom
annotated source: 1,2-ethanedithiol modified residue
annotated property: definition
annotated target: A protein modification that effectively substitutes a (2-sulfanylethyl)sulfanyl (or thioethylthiol) group for a hydroxy group.
database_cross_reference: DeltaMass:0
database_cross_reference: PubMed:11507762
database_cross_reference: Unimod:200

Axiom
annotated source: 1,2-ethanedithiol modified residue
annotated property: has_exact_synonym
annotated target: 1,2-ethanedithiol (EDT)
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: 1,2-ethanedithiol modified residue
annotated property: has_related_synonym
annotated target: EDT
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: 1,2-ethanedithiol modified residue
annotated property: has_related_synonym
annotated target: Ethanedithiol
has_synonym_type: Agreed label from MS community

APTA-d0 with no neutral loss
type: Class
definition: OBSOLETE because Unimod entry 202 was merged with entry 195, remap to MOD:00548. modification from Unimod Chemical derivative
term replaced by: MOD:00548
diff avg: 170.26
diff formula: C 9 H 18 N 2 O 1
diff mono: 170.1419
origin: C
source: artifact
database_cross_reference: Unimod:202
has_obo_namespace: PSI-MOD
id: MOD:00554
deprecated: true

Axiom
annotated source: APTA-d0 with no neutral loss
annotated property: definition
annotated target: OBSOLETE because Unimod entry 202 was merged with entry 195, remap to MOD:00548. modification from Unimod Chemical derivative
database_cross_reference: Unimod:202

APTA-d0 with quaternary amine loss
type: Class
definition: OBSOLETE because Unimod entry 202 was merged with entry 195, remap to MOD:00548. modification from Unimod Chemical derivative
term replaced by: MOD:00548
diff avg: 170.26
diff formula: C 9 H 18 N 2 O 1
diff mono: 170.1419
origin: C
source: artifact
database_cross_reference: Unimod:203
has_obo_namespace: PSI-MOD
id: MOD:00555
deprecated: true

Axiom
annotated source: APTA-d0 with quaternary amine loss
annotated property: definition
annotated target: OBSOLETE because Unimod entry 202 was merged with entry 195, remap to MOD:00548. modification from Unimod Chemical derivative
database_cross_reference: Unimod:203

acrolein addition +94
type: Class
definition: OBSOLETE because this modification not supported by any literature that I can find[PMT]
diff avg: 94.11
diff formula: C 6 H 6 O 1
diff mono: 94.04186
formula: C 12 H 18 N 2 O 2
mass avg: 222.29
mass mono: 222.13683
origin: K
source: artifact
database_cross_reference: Unimod:205
has_obo_namespace: PSI-MOD
has_related_synonym: Acrolein addition +94
has_related_synonym: Delta:H(6)C(6)O(1)
id: MOD:00556
deprecated: true

Axiom
annotated source: acrolein addition +94
annotated property: definition
annotated target: OBSOLETE because this modification not supported by any literature that I can find[PMT]
database_cross_reference: Unimod:205

Axiom
annotated source: acrolein addition +94
annotated property: has_related_synonym
annotated target: Acrolein addition +94
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: acrolein addition +94
annotated property: has_related_synonym
annotated target: Delta:H(6)C(6)O(1)
has_synonym_type: Agreed label from MS community

acrolein addition +56
type: Class
definition: OBSOLETE because this modification not supported by the papers listed or any other that I can find[PMT]
diff avg: 56.06
diff formula: C 3 H 4 O 1
diff mono: 56.026215
origin: X
source: artifact
database_cross_reference: Unimod:206
has_obo_namespace: PSI-MOD
has_related_synonym: Acrolein addition +56
has_related_synonym: Delta:H(4)C(3)O(1)
id: MOD:00557
deprecated: true

Axiom
annotated source: acrolein addition +56
annotated property: definition
annotated target: OBSOLETE because this modification not supported by the papers listed or any other that I can find[PMT]
database_cross_reference: PubMed:10825247
database_cross_reference: PubMed:15541752
database_cross_reference: Unimod:206

Axiom
annotated source: acrolein addition +56
annotated property: has_related_synonym
annotated target: Acrolein addition +56
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: acrolein addition +56
annotated property: has_related_synonym
annotated target: Delta:H(4)C(3)O(1)
has_synonym_type: Agreed label from MS community

acrolein addition +38
type: Class
definition: OBSOLETE because this modification not supported by any literature that I can find[PMT]
diff avg: 38.05
diff formula: C 3 H 2
diff mono: 38.01565
formula: C 9 H 14 N 2 O 1
mass avg: 166.22
mass mono: 166.11061
origin: K
source: artifact
database_cross_reference: Unimod:207
has_obo_namespace: PSI-MOD
has_related_synonym: Acrolein addition +38
has_related_synonym: Delta:H(2)C(3)
id: MOD:00558
deprecated: true

Axiom
annotated source: acrolein addition +38
annotated property: definition
annotated target: OBSOLETE because this modification not supported by any literature that I can find[PMT]
database_cross_reference: Unimod:207

Axiom
annotated source: acrolein addition +38
annotated property: has_related_synonym
annotated target: Acrolein addition +38
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: acrolein addition +38
annotated property: has_related_synonym
annotated target: Delta:H(2)C(3)
has_synonym_type: Agreed label from MS community

acrolein addition +76
type: Class
definition: OBSOLETE because this modification not supported by any literature that I can find[PMT]
diff avg: 76.1
diff formula: C 6 H 4
diff mono: 76.0313
formula: C 12 H 16 N 2 O 1
mass avg: 204.27
mass mono: 204.12627
origin: K
source: artifact
database_cross_reference: Unimod:208
has_obo_namespace: PSI-MOD
has_related_synonym: Acrolein addition +76
has_related_synonym: Delta:H(4)C(6)
id: MOD:00559
deprecated: true

Axiom
annotated source: acrolein addition +76
annotated property: definition
annotated target: OBSOLETE because this modification not supported by any literature that I can find[PMT]
database_cross_reference: Unimod:208

Axiom
annotated source: acrolein addition +76
annotated property: has_related_synonym
annotated target: Acrolein addition +76
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: acrolein addition +76
annotated property: has_related_synonym
annotated target: Delta:H(4)C(6)
has_synonym_type: Agreed label from MS community

acrolein addition +112
type: Class
definition: OBSOLETE because this modification not supported by any literature that I can find[PMT]
diff avg: 112.13
diff formula: C 6 H 8 O 2
diff mono: 112.05243
formula: C 12 H 20 N 2 O 3
mass avg: 240.3
mass mono: 240.1474
origin: K
source: artifact
database_cross_reference: Unimod:209
has_obo_namespace: PSI-MOD
has_related_synonym: Acrolein addition +112
has_related_synonym: Delta:H(8)C(6)O(2)
id: MOD:00560
deprecated: true

Axiom
annotated source: acrolein addition +112
annotated property: definition
annotated target: OBSOLETE because this modification not supported by any literature that I can find[PMT]
database_cross_reference: Unimod:209

Axiom
annotated source: acrolein addition +112
annotated property: has_related_synonym
annotated target: Acrolein addition +112
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: acrolein addition +112
annotated property: has_related_synonym
annotated target: Delta:H(8)C(6)O(2)
has_synonym_type: Agreed label from MS community

N-ethyl iodoacetamide-
type: Class
subclass of: MOD_00848
definition: modification from Unimod Isotopic label
diff avg: 85.11
diff formula: C 4 H 7 N 1 O 1
diff mono: 85.052765
origin: X
source: artifact
database_cross_reference: Unimod:211
has_obo_namespace: PSI-MOD
has_related_synonym: N-ethyl iodoacetamide-d0
has_related_synonym: NEIAA
id: MOD:00561

Axiom
annotated source: N-ethyl iodoacetamide-
annotated property: definition
annotated target: modification from Unimod Isotopic label
database_cross_reference: PubMed:12766232
database_cross_reference: Unimod:211

Axiom
annotated source: N-ethyl iodoacetamide-
annotated property: has_related_synonym
annotated target: N-ethyl iodoacetamide-d0
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: N-ethyl iodoacetamide-
annotated property: has_related_synonym
annotated target: NEIAA
has_synonym_type: Agreed label from MS community

N-ethyl iodoacetamide-d5
type: Class
subclass of: MOD_01431
definition: modification from Unimod Isotopic label
diff avg: 90.08
diff formula: C 4 (1)H 2 (2)H 5 N 1 O 1
diff mono: 90.084145
origin: X
source: artifact
database_cross_reference: Unimod:212
has_obo_namespace: PSI-MOD
has_related_synonym: N-ethyl iodoacetamide-d5
has_related_synonym: NEIAA:2H(5)
id: MOD:00562

Axiom
annotated source: N-ethyl iodoacetamide-d5
annotated property: definition
annotated target: modification from Unimod Isotopic label
database_cross_reference: PubMed:12766232
database_cross_reference: Unimod:212

Axiom
annotated source: N-ethyl iodoacetamide-d5
annotated property: has_related_synonym
annotated target: N-ethyl iodoacetamide-d5
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: N-ethyl iodoacetamide-d5
annotated property: has_related_synonym
annotated target: NEIAA:2H(5)
has_synonym_type: Agreed label from MS community

mono-N-acetylaminogalactosylated residue
type: Class
subclass of: MOD_00734
subclass of: MOD_01673
definition: A protein modification that effectively replaces a hydrogen atom with an N-acetylaminogalactose group through a glycosidic bond.
diff avg: 203.19
diff formula: C 8 H 13 N 1 O 5
diff mono: 203.07938
origin: X
has_exact_synonym: GalNAcRes
has_obo_namespace: PSI-MOD
has_related_synonym: HexNAc
id: MOD:00563
in_subset: PSI-MOD-slim

Axiom
annotated source: mono-N-acetylaminogalactosylated residue
annotated property: definition
annotated target: A protein modification that effectively replaces a hydrogen atom with an N-acetylaminogalactose group through a glycosidic bond.
database_cross_reference: PubMed:18688235

Axiom
annotated source: mono-N-acetylaminogalactosylated residue
annotated property: has_exact_synonym
annotated target: GalNAcRes
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: mono-N-acetylaminogalactosylated residue
annotated property: has_related_synonym
annotated target: HexNAc
has_synonym_type: Agreed label from MS community

Applied Biosystems iTRAQ(TM) multiplexed quantitation chemistry
type: Class
definition: Modification from Unimod Isotopic label. The Unimod term was extracted when it had not been approved. OBSOLETE because redundant to MOD:01505. Remap to MOD:01505, or one of the child terms MOD:01493 or MOD:01497.
term replaced by: MOD:01505
origin: X
source: artifact
database_cross_reference: Unimod:214
has_obo_namespace: PSI-MOD
has_related_synonym: Representative mass and accurate mass for 116 & 117
has_related_synonym: iTRAQ4plex
id: MOD:00564
deprecated: true

Axiom
annotated source: Applied Biosystems iTRAQ(TM) multiplexed quantitation chemistry
annotated property: definition
annotated target: Modification from Unimod Isotopic label. The Unimod term was extracted when it had not been approved. OBSOLETE because redundant to MOD:01505. Remap to MOD:01505, or one of the child terms MOD:01493 or MOD:01497.
database_cross_reference: URL:http://docs.appliedbiosystems.com/pebiodocs/04351918.pdf
database_cross_reference: Unimod:214

Axiom
annotated source: Applied Biosystems iTRAQ(TM) multiplexed quantitation chemistry
annotated property: has_related_synonym
annotated target: Representative mass and accurate mass for 116 & 117
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: Applied Biosystems iTRAQ(TM) multiplexed quantitation chemistry
annotated property: has_related_synonym
annotated target: iTRAQ4plex
has_synonym_type: Interim label from Unimod

deglycosylated asparagine
type: Class
subclass of: MOD_00903
definition: modification from Unimod N-linked glycosylation
diff avg: 0.98
diff formula: H -1 N -1 O 1
diff mono: 0.984016
formula: C 4 H 5 N 1 O 3
mass avg: 115.09
mass mono: 115.02694
origin: N
source: artifact
database_cross_reference: Unimod:7
has_obo_namespace: PSI-MOD
has_related_synonym: Deamidated
has_related_synonym: Deamidation
id: MOD:00565
comment: Conversion of glycosylated asparagine residues upon deglycosylation with PGNase F in H2O. CAUTION - the difference formula appears to be based on a partial structure [JSG].

Axiom
annotated source: deglycosylated asparagine
annotated property: definition
annotated target: modification from Unimod N-linked glycosylation
database_cross_reference: Unimod:7#N

Axiom
annotated source: deglycosylated asparagine
annotated property: has_related_synonym
annotated target: Deamidated
has_synonym_type: Interim label from Unimod

Axiom
annotated source: deglycosylated asparagine
annotated property: has_related_synonym
annotated target: Deamidation
has_synonym_type: Description (full_name) from Unimod

label cysteine with IGBP reagent
type: Class
subclass of: MOD_00848
subclass of: MOD_00905
definition: modification from Unimod Chemical derivative
diff avg: 297.15
diff formula: Br 1 C 12 H 13 N 2 O 2
diff mono: 296.01605
formula: Br 1 C 15 H 18 N 3 O 3 S 1
mass avg: 400.29
mass mono: 399.02524
origin: C
source: artifact
database_cross_reference: Unimod:243
has_obo_namespace: PSI-MOD
has_related_synonym: IGBP
has_related_synonym: Light IDBEST tag for quantitation
id: MOD:00566
comment: "IDBEST tag for quantitation, http://www.targetdiscovery.com/index.php?topic=prod.idbe"

Axiom
annotated source: label cysteine with IGBP reagent
annotated property: definition
annotated target: modification from Unimod Chemical derivative
database_cross_reference: Unimod:243

Axiom
annotated source: label cysteine with IGBP reagent
annotated property: has_related_synonym
annotated target: IGBP
has_synonym_type: Agreed label from MS community

Axiom
annotated source: label cysteine with IGBP reagent
annotated property: has_related_synonym
annotated target: Light IDBEST tag for quantitation
has_synonym_type: Description (full_name) from Unimod

histidine oxidation to asparagine
type: Class
definition: OBSOLETE because Unimod entry 244 is redundant with Unimod 348. Remap to MOD:00775.
diff avg: -23.04
diff formula: C -2 H -1 N -1 O 1
diff mono: -23.015984
origin: H
source: artifact
database_cross_reference: Unimod:244
has_obo_namespace: PSI-MOD
id: MOD:00567
deprecated: true

Axiom
annotated source: histidine oxidation to asparagine
annotated property: definition
annotated target: OBSOLETE because Unimod entry 244 is redundant with Unimod 348. Remap to MOD:00775.
database_cross_reference: ChEBI:29956
database_cross_reference: PubMed:15736973
database_cross_reference: PubMed:5681232
database_cross_reference: PubMed:6692818
database_cross_reference: PubMed:9789001
database_cross_reference: RESID:AA0003
database_cross_reference: Unimod:244

histidine oxidation to aspartic acid
type: Class
definition: OBSOLETE because Unimod entry 245 is redundant with Unimod 349. Remap to MOD:00776
term replaced by: MOD:00776
diff avg: -22.05
diff formula: C -2 H -2 N -2 O 2
diff mono: -22.03197
origin: H
source: artifact
database_cross_reference: Unimod:245
has_obo_namespace: PSI-MOD
id: MOD:00568
deprecated: true

Axiom
annotated source: histidine oxidation to aspartic acid
annotated property: definition
annotated target: OBSOLETE because Unimod entry 245 is redundant with Unimod 349. Remap to MOD:00776
database_cross_reference: PubMed:1097438
database_cross_reference: PubMed:339692
database_cross_reference: PubMed:4399050
database_cross_reference: PubMed:5764436
database_cross_reference: PubMed:6692818
database_cross_reference: PubMed:8089117
database_cross_reference: PubMed:9521123
database_cross_reference: PubMed:9582379
database_cross_reference: Unimod:245

residues isobaric at a resolution below 0.000001 Da
type: Class
subclass of: MOD_00770
definition: Natural or modified residues that are isobaric at a resolution below 0.000001 Da.
has_obo_namespace: PSI-MOD
id: MOD:00569
in_subset: PSI-MOD-slim

Axiom
annotated source: residues isobaric at a resolution below 0.000001 Da
annotated property: definition
annotated target: Natural or modified residues that are isobaric at a resolution below 0.000001 Da.
database_cross_reference: PubMed:18688235

residues isobaric at 71.037114 Da
type: Class
subclass of: residues isobaric at a resolution below 0.000001 Da
subclass of: MOD_00769
definition: Natural or modified residues with a mass of 71.037114 Da.
has_obo_namespace: PSI-MOD
id: MOD:00570

Axiom
annotated source: residues isobaric at 71.037114 Da
annotated property: definition
annotated target: Natural or modified residues with a mass of 71.037114 Da.
database_cross_reference: PubMed:18688235

2-pyrrolidone-5-carboxylic acid (Pro)
type: Class
subclass of: MOD_00679
subclass of: MOD_00915
subclass of: MOD_01048
definition: A modification that effectively oxygenates C5 of an L-proline residue to form a 2-pyrrolidone-5-carboxylic acid, pyroglutamic acid.
diff avg: 13.98
diff formula: H -2 O 1
diff mono: 13.979265
formula: C 5 H 6 N 1 O 2
mass avg: 112.11
mass mono: 112.039856
origin: P
source: artifact
database_cross_reference: Unimod:359
has_exact_synonym: PyrGlu(Pro)
has_exact_synonym: pyroglutamicp
has_obo_namespace: PSI-MOD
has_related_synonym: Pro->pyro-Glu
has_related_synonym: Pyroglutamic
id: MOD:00571
comment: The review article PubMed:9252331 does not provide an original citation for this modification [JSG].

Axiom
annotated source: 2-pyrrolidone-5-carboxylic acid (Pro)
annotated property: definition
annotated target: A modification that effectively oxygenates C5 of an L-proline residue to form a 2-pyrrolidone-5-carboxylic acid, pyroglutamic acid.
database_cross_reference: OMSSA:111
database_cross_reference: PubMed:9252331
database_cross_reference: Unimod:359

Axiom
annotated source: 2-pyrrolidone-5-carboxylic acid (Pro)
annotated property: has_exact_synonym
annotated target: PyrGlu(Pro)
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: 2-pyrrolidone-5-carboxylic acid (Pro)
annotated property: has_exact_synonym
annotated target: pyroglutamicp
has_synonym_type: Short label from OMSSA

Axiom
annotated source: 2-pyrrolidone-5-carboxylic acid (Pro)
annotated property: has_related_synonym
annotated target: Pro->pyro-Glu
has_synonym_type: Agreed label from MS community

Axiom
annotated source: 2-pyrrolidone-5-carboxylic acid (Pro)
annotated property: has_related_synonym
annotated target: Pyroglutamic
has_synonym_type: Interim label from Unimod

oxidized arginine biotinylated with biotin hydrazide
type: Class
subclass of: MOD_00848
subclass of: MOD_00902
definition: modification from Unimod Chemical derivative
diff avg: 199.27
diff formula: C 9 H 13 N 1 O 2 S 1
diff mono: 199.0667
formula: C 15 H 25 N 5 O 3 S 1
mass avg: 355.46
mass mono: 355.16782
origin: R
source: artifact
database_cross_reference: Unimod:343
has_obo_namespace: PSI-MOD
has_related_synonym: Argbiotinhydrazide
has_related_synonym: oxidized Arginine biotinylated with biotin hydrazide
id: MOD:00572

Axiom
annotated source: oxidized arginine biotinylated with biotin hydrazide
annotated property: definition
annotated target: modification from Unimod Chemical derivative
database_cross_reference: PubMed:15174056
database_cross_reference: PubMed:15828771
database_cross_reference: Unimod:343

Axiom
annotated source: oxidized arginine biotinylated with biotin hydrazide
annotated property: has_related_synonym
annotated target: Argbiotinhydrazide
has_synonym_type: Interim label from Unimod

Axiom
annotated source: oxidized arginine biotinylated with biotin hydrazide
annotated property: has_related_synonym
annotated target: oxidized Arginine biotinylated with biotin hydrazide
has_synonym_type: Description (full_name) from Unimod

oxidized lysine biotinylated with biotin hydrazide
type: Class
subclass of: MOD_00848
subclass of: MOD_00912
definition: modification from Unimod Chemical derivative
diff avg: 241.31
diff formula: C 10 H 15 N 3 O 2 S 1
diff mono: 241.0885
formula: C 16 H 27 N 5 O 3 S 1
mass avg: 369.48
mass mono: 369.18347
origin: K
source: artifact
database_cross_reference: Unimod:353
has_obo_namespace: PSI-MOD
has_related_synonym: Lysbiotinhydrazide
has_related_synonym: oxidized Lysine biotinylated with biotin hydrazide
id: MOD:00573
comment: "http://www.piercenet.com/Proteomics/browse.cfm?fldID=84EBE112-F871-4CA5-807F-47327153CFCB"

Axiom
annotated source: oxidized lysine biotinylated with biotin hydrazide
annotated property: definition
annotated target: modification from Unimod Chemical derivative
database_cross_reference: PubMed:15174056
database_cross_reference: Unimod:353

Axiom
annotated source: oxidized lysine biotinylated with biotin hydrazide
annotated property: has_related_synonym
annotated target: Lysbiotinhydrazide
has_synonym_type: Interim label from Unimod

Axiom
annotated source: oxidized lysine biotinylated with biotin hydrazide
annotated property: has_related_synonym
annotated target: oxidized Lysine biotinylated with biotin hydrazide
has_synonym_type: Description (full_name) from Unimod

oxidized proline biotinylated with biotin hydrazide
type: Class
subclass of: MOD_00848
subclass of: MOD_00915
definition: modification from Unimod Chemical derivative
diff avg: 258.34
diff formula: C 10 H 18 N 4 O 2 S 1
diff mono: 258.11505
formula: C 15 H 25 N 5 O 3 S 1
mass avg: 355.46
mass mono: 355.16782
origin: P
source: artifact
database_cross_reference: Unimod:357
has_obo_namespace: PSI-MOD
has_related_synonym: oxidized proline biotinylated with biotin hydrazide
has_related_synonym: probiotinhydrazide
id: MOD:00574
comment: "http://www.piercenet.com/Proteomics/browse.cfm?fldID=84EBE112-F871-4CA5-807F-47327153CFCB"

Axiom
annotated source: oxidized proline biotinylated with biotin hydrazide
annotated property: definition
annotated target: modification from Unimod Chemical derivative
database_cross_reference: PubMed:15174056
database_cross_reference: Unimod:357

Axiom
annotated source: oxidized proline biotinylated with biotin hydrazide
annotated property: has_related_synonym
annotated target: oxidized proline biotinylated with biotin hydrazide
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: oxidized proline biotinylated with biotin hydrazide
annotated property: has_related_synonym
annotated target: probiotinhydrazide
has_synonym_type: Interim label from Unimod

oxidized threonine biotinylated with biotin hydrazide
type: Class
subclass of: MOD_00848
subclass of: MOD_00917
definition: modification from Unimod Chemical derivative
diff avg: 240.32
diff formula: C 10 H 16 N 4 O 1 S 1
diff mono: 240.10448
formula: C 14 H 23 N 5 O 3 S 1
mass avg: 341.43
mass mono: 341.15216
origin: T
source: artifact
database_cross_reference: Unimod:361
has_obo_namespace: PSI-MOD
has_related_synonym: Thrbiotinhydrazide
has_related_synonym: oxidized Threonine biotinylated with biotin hydrazide
id: MOD:00575
comment: "http://www.piercenet.com/Proteomics/browse.cfm?fldID=84EBE112-F871-4CA5-807F-47327153CFCB"

Axiom
annotated source: oxidized threonine biotinylated with biotin hydrazide
annotated property: definition
annotated target: modification from Unimod Chemical derivative
database_cross_reference: PubMed:15174056
database_cross_reference: Unimod:361

Axiom
annotated source: oxidized threonine biotinylated with biotin hydrazide
annotated property: has_related_synonym
annotated target: Thrbiotinhydrazide
has_synonym_type: Interim label from Unimod

Axiom
annotated source: oxidized threonine biotinylated with biotin hydrazide
annotated property: has_related_synonym
annotated target: oxidized Threonine biotinylated with biotin hydrazide
has_synonym_type: Description (full_name) from Unimod

crotonylated residue
type: Class
subclass of: acylated residue
definition: modification from Unimod Other
diff avg: 70.09
diff formula: C 4 H 6 O 1
diff mono: 70.04186
origin: X
source: artifact
database_cross_reference: Unimod:253
has_obo_namespace: PSI-MOD
has_related_synonym: Crotonaldehyde
id: MOD:00576

Axiom
annotated source: crotonylated residue
annotated property: definition
annotated target: modification from Unimod Other
database_cross_reference: PubMed:11283024
database_cross_reference: PubMed:25907603
database_cross_reference: Unimod:253

Axiom
annotated source: crotonylated residue
annotated property: has_related_synonym
annotated target: Crotonaldehyde
has_synonym_type: Agreed label from MS community

Axiom
annotated source: crotonylated residue
annotated property: has_related_synonym
annotated target: Crotonaldehyde
has_synonym_type: Description (full_name) from Unimod

acetaldehyde crosslinked penta-L-lysine
type: Class
subclass of: MOD_00692
subclass of: MOD_02051
definition: modification occurs as a Schiff base in the presence of pentalysine
diff avg: 26.04
diff formula: C 2 H 2
diff mono: 26.01565
formula: C 8 H 14 N 2 O 1
mass avg: 666.91
mass mono: 666.4905
origin: K, K, K, K, K
source: artifact
database_cross_reference: Unimod:254
has_obo_namespace: PSI-MOD
has_related_synonym: Acetaldehyde +26
has_related_synonym: Delta:H(2)C(2)
id: MOD:00577

Axiom
annotated source: acetaldehyde crosslinked penta-L-lysine
annotated property: definition
annotated target: modification occurs as a Schiff base in the presence of pentalysine
database_cross_reference: PubMed:7744761
database_cross_reference: Unimod:254

Axiom
annotated source: acetaldehyde crosslinked penta-L-lysine
annotated property: has_related_synonym
annotated target: Acetaldehyde +26
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: acetaldehyde crosslinked penta-L-lysine
annotated property: has_related_synonym
annotated target: Delta:H(2)C(2)
has_synonym_type: Agreed label from MS community

acetaldehyde +28
type: Class
definition: OBSOLETE because this modification not supported by any literature that I can find [PMT]
diff avg: 28.05
diff formula: C 2 H 4
diff mono: 28.0313
formula: C
origin: X
source: artifact
database_cross_reference: Unimod:255
has_obo_namespace: PSI-MOD
has_related_synonym: Acetaldehyde +28
has_related_synonym: Delta:H(4)C(2)
id: MOD:00578
deprecated: true

Axiom
annotated source: acetaldehyde +28
annotated property: definition
annotated target: OBSOLETE because this modification not supported by any literature that I can find [PMT]
database_cross_reference: Unimod:255

Axiom
annotated source: acetaldehyde +28
annotated property: has_related_synonym
annotated target: Acetaldehyde +28
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: acetaldehyde +28
annotated property: has_related_synonym
annotated target: Delta:H(4)C(2)
has_synonym_type: Agreed label from MS community

propionaldehyde +40
type: Class
definition: OBSOLETE because not supported by the linked literature [PMT]. modification from Unimod Other
diff avg: 40.06
diff formula: C 3 H 4
diff mono: 40.0313
origin: X
source: artifact
database_cross_reference: Unimod:256
has_obo_namespace: PSI-MOD
has_related_synonym: Delta:H(4)C(3)
has_related_synonym: Propionaldehyde +40
id: MOD:00579
deprecated: true

Axiom
annotated source: propionaldehyde +40
annotated property: definition
annotated target: OBSOLETE because not supported by the linked literature [PMT]. modification from Unimod Other
database_cross_reference: Unimod:256

Axiom
annotated source: propionaldehyde +40
annotated property: has_related_synonym
annotated target: Delta:H(4)C(3)
has_synonym_type: Agreed label from MS community

Axiom
annotated source: propionaldehyde +40
annotated property: has_related_synonym
annotated target: Propionaldehyde +40
has_synonym_type: Description (full_name) from Unimod

propionaldehyde +42
type: Class
definition: OBSOLETE because entry removed from Unimod. Remap potentially to MOD:00579 propionaldehyde +40
term replaced by: MOD:00579
diff avg: 42.08
diff formula: C 3 H 6
diff mono: 42.04695
origin: X
source: artifact
database_cross_reference: Unimod:257
has_obo_namespace: PSI-MOD
id: MOD:00580
deprecated: true

Axiom
annotated source: propionaldehyde +42
annotated property: definition
annotated target: OBSOLETE because entry removed from Unimod. Remap potentially to MOD:00579 propionaldehyde +40
database_cross_reference: Unimod:257

(18)O monosubstituted residue
type: Class
subclass of: MOD_00845
definition: A protein modification that effectively substitutes one (18)O atom for one (16)O atom.
diff avg: 2.0
diff formula: (16)O -1 (18)O 1
diff mono: 2.004246
origin: X
source: artifact
term spec: C-term
database_cross_reference: Unimod:258
has_exact_synonym: ctermpepo18
has_obo_namespace: PSI-MOD
has_related_synonym: Label:18O(1)
has_related_synonym: O18 Labeling
id: MOD:00581
in_subset: PSI-MOD-slim

Axiom
annotated source: (18)O monosubstituted residue
annotated property: definition
annotated target: A protein modification that effectively substitutes one (18)O atom for one (16)O atom.
database_cross_reference: OMSSA:87
database_cross_reference: PubMed:11467524
database_cross_reference: Unimod:258

Axiom
annotated source: (18)O monosubstituted residue
annotated property: has_exact_synonym
annotated target: ctermpepo18
has_synonym_type: Short label from OMSSA

Axiom
annotated source: (18)O monosubstituted residue
annotated property: has_related_synonym
annotated target: Label:18O(1)
has_synonym_type: Agreed label from MS community

Axiom
annotated source: (18)O monosubstituted residue
annotated property: has_related_synonym
annotated target: O18 Labeling
has_synonym_type: Description (full_name) from Unimod

6x(13)C,2x(15)N labeled L-lysine
type: Class
subclass of: MOD_00842
subclass of: MOD_00843
subclass of: MOD_00912
definition: A protein modification that effectively converts an L-lysine residue to 6x(13)C,2x(15)N labeled L-lysine.
diff avg: 8.01
diff formula: (12)C -6 (13)C 6 (14)N -2 (15)N 2
diff mono: 8.014199
formula: (13)C 6 H 12 (15)N 2 O 1
mass avg: 136.11
mass mono: 136.10916
origin: K
source: artifact
database_cross_reference: Unimod:259
has_exact_synonym: lys-13C615N2
has_obo_namespace: PSI-MOD
has_related_synonym: 13C(6) 15N(2) Silac label
has_related_synonym: Label:13C(6)15N(2)
id: MOD:00582

Axiom
annotated source: 6x(13)C,2x(15)N labeled L-lysine
annotated property: definition
annotated target: A protein modification that effectively converts an L-lysine residue to 6x(13)C,2x(15)N labeled L-lysine.
database_cross_reference: OMSSA:181
database_cross_reference: PubMed:12716131
database_cross_reference: Unimod:259

Axiom
annotated source: 6x(13)C,2x(15)N labeled L-lysine
annotated property: has_exact_synonym
annotated target: lys-13C615N2
has_synonym_type: Short label from OMSSA

Axiom
annotated source: 6x(13)C,2x(15)N labeled L-lysine
annotated property: has_related_synonym
annotated target: 13C(6) 15N(2) Silac label
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: 6x(13)C,2x(15)N labeled L-lysine
annotated property: has_related_synonym
annotated target: Label:13C(6)15N(2)
has_synonym_type: Agreed label from MS community

thiophosphorylated residue
type: Class
subclass of: MOD_00860
subclass of: MOD_00861
definition: A protein modification that effectively replaces a hydrogen atom with a thiophosphono group (H2PO2S, 'thiophosphate').
diff avg: 96.04
diff formula: H 1 O 2 P 1 S 1
diff mono: 95.94349
origin: X
source: artifact
database_cross_reference: Unimod:260
has_obo_namespace: PSI-MOD
has_related_synonym: Thiophospho
has_related_synonym: Thiophosphorylation
id: MOD:00583

Axiom
annotated source: thiophosphorylated residue
annotated property: definition
annotated target: A protein modification that effectively replaces a hydrogen atom with a thiophosphono group (H2PO2S, 'thiophosphate').
database_cross_reference: PubMed:12110917
database_cross_reference: Unimod:260

Axiom
annotated source: thiophosphorylated residue
annotated property: has_related_synonym
annotated target: Thiophospho
has_synonym_type: Agreed label from MS community

Axiom
annotated source: thiophosphorylated residue
annotated property: has_related_synonym
annotated target: Thiophosphorylation
has_synonym_type: Description (full_name) from Unimod

4-sulfophenyl isothiocyanate derivatized residue
type: Class
subclass of: MOD_00841
definition: A protein modification produced by formation of an adduct with 4-sulfophenyl isothiocyanate.
diff avg: 215.24
diff formula: C 7 H 5 N 1 O 3 S 2
diff mono: 214.97108
origin: X
source: artifact
term spec: N-term
database_cross_reference: Unimod:261
has_obo_namespace: PSI-MOD
has_related_synonym: 4-sulfophenyl isothiocyanate
has_related_synonym: SPITC
id: MOD:00584

Axiom
annotated source: 4-sulfophenyl isothiocyanate derivatized residue
annotated property: definition
annotated target: A protein modification produced by formation of an adduct with 4-sulfophenyl isothiocyanate.
database_cross_reference: PubMed:14689565
database_cross_reference: PubMed:14745769
database_cross_reference: PubMed:16526082
database_cross_reference: Unimod:261

Axiom
annotated source: 4-sulfophenyl isothiocyanate derivatized residue
annotated property: has_related_synonym
annotated target: 4-sulfophenyl isothiocyanate
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: 4-sulfophenyl isothiocyanate derivatized residue
annotated property: has_related_synonym
annotated target: SPITC
has_synonym_type: Agreed label from MS community

deuterium trisubstituted residue
type: Class
subclass of: MOD_00786
definition: A protein modification that effectively substitutes three (2)H deuterium atoms for three (1)H protium atoms.
diff avg: 3.02
diff formula: (1)H -3 (2)H 3
diff mono: 3.01883
origin: X
source: artifact
database_cross_reference: Unimod:262
has_exact_synonym: D(H)3Res
has_obo_namespace: PSI-MOD
has_related_synonym: Label:2H(3)
has_related_synonym: Trideuteration
id: MOD:00585

Axiom
annotated source: deuterium trisubstituted residue
annotated property: definition
annotated target: A protein modification that effectively substitutes three (2)H deuterium atoms for three (1)H protium atoms.
database_cross_reference: Unimod:262

Axiom
annotated source: deuterium trisubstituted residue
annotated property: has_exact_synonym
annotated target: D(H)3Res
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: deuterium trisubstituted residue
annotated property: has_related_synonym
annotated target: Label:2H(3)
has_synonym_type: Agreed label from MS community

Axiom
annotated source: deuterium trisubstituted residue
annotated property: has_related_synonym
annotated target: Trideuteration
has_synonym_type: Description (full_name) from Unimod

pyridyl thiol modified residue
type: Class
subclass of: MOD_00848
definition: modification from Unimod Chemical derivative
diff avg: 121.2
diff formula: C 7 H 7 N 1 O -1 S 1
diff mono: 121.035
origin: X
source: artifact
database_cross_reference: Unimod:264
has_obo_namespace: PSI-MOD
has_related_synonym: PET
has_related_synonym: phosphorylation to pyridyl thiol
id: MOD:00586

Axiom
annotated source: pyridyl thiol modified residue
annotated property: definition
annotated target: modification from Unimod Chemical derivative
database_cross_reference: Unimod:264

Axiom
annotated source: pyridyl thiol modified residue
annotated property: has_related_synonym
annotated target: PET
has_synonym_type: Agreed label from MS community

Axiom
annotated source: pyridyl thiol modified residue
annotated property: has_related_synonym
annotated target: phosphorylation to pyridyl thiol
has_synonym_type: Description (full_name) from Unimod

6x(13)C,4x(15)N labeled L-arginine
type: Class
subclass of: MOD_00842
subclass of: MOD_00843
subclass of: MOD_00902
definition: A protein modification that effectively converts an L-arginine residue to 6x(13)C, 4x(15)N labeled L-arginine.
diff avg: 10.01
diff formula: (12)C -6 (13)C 6 (14)N -4 (15)N 4
diff mono: 10.008269
formula: (13)C 6 H 12 (15)N 4 O 1
mass avg: 166.11
mass mono: 166.10938
origin: R
source: artifact
database_cross_reference: Unimod:267
has_exact_synonym: arg-13c6-15n4
has_obo_namespace: PSI-MOD
has_related_synonym: 13C(6) 15N(4) Silac label
has_related_synonym: Label:13C(6)15N(4)
id: MOD:00587
in_subset: PSI-MOD-slim

Axiom
annotated source: 6x(13)C,4x(15)N labeled L-arginine
annotated property: definition
annotated target: A protein modification that effectively converts an L-arginine residue to 6x(13)C, 4x(15)N labeled L-arginine.
database_cross_reference: OMSSA:137
database_cross_reference: PubMed:12716131
database_cross_reference: Unimod:267

Axiom
annotated source: 6x(13)C,4x(15)N labeled L-arginine
annotated property: has_exact_synonym
annotated target: arg-13c6-15n4
has_synonym_type: Short label from OMSSA

Axiom
annotated source: 6x(13)C,4x(15)N labeled L-arginine
annotated property: has_related_synonym
annotated target: 13C(6) 15N(4) Silac label
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: 6x(13)C,4x(15)N labeled L-arginine
annotated property: has_related_synonym
annotated target: Label:13C(6)15N(4)
has_synonym_type: Agreed label from MS community

5x(13)C,1x(15)N labeled L-valine
type: Class
subclass of: MOD_00920
subclass of: MOD_01809
definition: A protein modification that effectively converts an L-valine residue to 5x(13)C,1x(15)N labeled L-valine.
diff avg: 6.01
diff formula: (12)C -5 (13)C 5 (14)N -1 (15)N 1
diff mono: 6.013809
formula: (13)C 5 H 9 (15)N 1 O 1
mass avg: 105.08
mass mono: 105.08222
origin: V
source: artifact
database_cross_reference: Unimod:268
has_obo_namespace: PSI-MOD
has_related_synonym: 13C(5) 15N(1) Silac label
has_related_synonym: Label:13C(5)15N(1)
id: MOD:00588

Axiom
annotated source: 5x(13)C,1x(15)N labeled L-valine
annotated property: definition
annotated target: A protein modification that effectively converts an L-valine residue to 5x(13)C,1x(15)N labeled L-valine.
database_cross_reference: PubMed:12771378
database_cross_reference: Unimod:268#V

Axiom
annotated source: 5x(13)C,1x(15)N labeled L-valine
annotated property: has_related_synonym
annotated target: 13C(5) 15N(1) Silac label
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: 5x(13)C,1x(15)N labeled L-valine
annotated property: has_related_synonym
annotated target: Label:13C(5)15N(1)
has_synonym_type: Agreed label from MS community

9x(13)C,1x(15)N labeled L-phenylalanine
type: Class
subclass of: MOD_00842
subclass of: MOD_00843
subclass of: MOD_00914
definition: A protein modification that effectively converts an L-phenylalanine residue to (13)C,(15)N labeled L-phenylalanine.
diff avg: 10.03
diff formula: (12)C -9 (13)C 9 (14)N -1 (15)N 1
diff mono: 10.027228
formula: (13)C 9 H 9 (15)N 1 O 1
mass avg: 157.1
mass mono: 157.09564
origin: F
source: artifact
database_cross_reference: Unimod:269
has_obo_namespace: PSI-MOD
has_related_synonym: 13C(9) 15N(1) Silac label
has_related_synonym: Label:13C(9)15N(1)
id: MOD:00589

Axiom
annotated source: 9x(13)C,1x(15)N labeled L-phenylalanine
annotated property: definition
annotated target: A protein modification that effectively converts an L-phenylalanine residue to (13)C,(15)N labeled L-phenylalanine.
database_cross_reference: PubMed:12771378
database_cross_reference: Unimod:269

Axiom
annotated source: 9x(13)C,1x(15)N labeled L-phenylalanine
annotated property: has_related_synonym
annotated target: 13C(9) 15N(1) Silac label
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: 9x(13)C,1x(15)N labeled L-phenylalanine
annotated property: has_related_synonym
annotated target: Label:13C(9)15N(1)
has_synonym_type: Agreed label from MS community

nucleophilic addtion to cytopiloyne
type: Class
definition: OBSOLETE because there is no evidence in the literature of covalent modification of polypeptides with cytopiloyne or cytopiloyne+H2O. Modifications could potentially happen, but are not experimentally verified. [PMT] modification from Unimod Chemical derivative
diff avg: 362.38
diff formula: C 19 H 22 O 7
diff mono: 362.13657
origin: X
source: artifact
database_cross_reference: Unimod:270
has_obo_namespace: PSI-MOD
has_related_synonym: Cytopiloyne
has_related_synonym: nucleophilic addtion to cytopiloyne
id: MOD:00590
deprecated: true

Axiom
annotated source: nucleophilic addtion to cytopiloyne
annotated property: definition
annotated target: OBSOLETE because there is no evidence in the literature of covalent modification of polypeptides with cytopiloyne or cytopiloyne+H2O. Modifications could potentially happen, but are not experimentally verified. [PMT] modification from Unimod Chemical derivative
database_cross_reference: PubMed:15549660
database_cross_reference: Unimod:270

Axiom
annotated source: nucleophilic addtion to cytopiloyne
annotated property: has_related_synonym
annotated target: Cytopiloyne
has_synonym_type: Agreed label from MS community

Axiom
annotated source: nucleophilic addtion to cytopiloyne
annotated property: has_related_synonym
annotated target: nucleophilic addtion to cytopiloyne
has_synonym_type: Description (full_name) from Unimod

nucleophilic addition to cytopiloyne+H2O
type: Class
definition: OBSOLETE because there is no evidence in the literature of covalent modification of polypeptides with cytopiloyne or cytopiloyne+H2O. Modifications could potentially happen, but are not experimentally verified. [PMT] modification from Unimod Chemical derivative
diff avg: 380.39
diff formula: C 19 H 24 O 8
diff mono: 380.14713
origin: X
source: artifact
database_cross_reference: Unimod:271
has_obo_namespace: PSI-MOD
has_related_synonym: Cytopiloyne+water
has_related_synonym: nucleophilic addition to cytopiloyne+H2O
id: MOD:00591
deprecated: true

Axiom
annotated source: nucleophilic addition to cytopiloyne+H2O
annotated property: definition
annotated target: OBSOLETE because there is no evidence in the literature of covalent modification of polypeptides with cytopiloyne or cytopiloyne+H2O. Modifications could potentially happen, but are not experimentally verified. [PMT] modification from Unimod Chemical derivative
database_cross_reference: PubMed:15549660
database_cross_reference: Unimod:271

Axiom
annotated source: nucleophilic addition to cytopiloyne+H2O
annotated property: has_related_synonym
annotated target: Cytopiloyne+water
has_synonym_type: Agreed label from MS community

Axiom
annotated source: nucleophilic addition to cytopiloyne+H2O
annotated property: has_related_synonym
annotated target: nucleophilic addition to cytopiloyne+H2O
has_synonym_type: Description (full_name) from Unimod

sulfonation of N-terminal
type: Class
subclass of: MOD_00848
definition: modification from Unimod Chemical derivative
diff avg: 136.12
diff formula: C 3 H 4 O 4 S 1
diff mono: 135.98303
origin: X
source: artifact
term spec: N-term
database_cross_reference: Unimod:272
has_obo_namespace: PSI-MOD
has_related_synonym: CAF
has_related_synonym: sulfonation of N-terminus
id: MOD:00592

Axiom
annotated source: sulfonation of N-terminal
annotated property: definition
annotated target: modification from Unimod Chemical derivative
database_cross_reference: PubMed:12705581
database_cross_reference: PubMed:15732931
database_cross_reference: PubMed:16046801
database_cross_reference: Unimod:272

Axiom
annotated source: sulfonation of N-terminal
annotated property: has_related_synonym
annotated target: CAF
has_synonym_type: Agreed label from MS community

Axiom
annotated source: sulfonation of N-terminal
annotated property: has_related_synonym
annotated target: sulfonation of N-terminus
has_synonym_type: Description (full_name) from Unimod

covalent modification of lysine by omega-maleimido alkanoyl N-hydroxysuccinimido esters
type: Class
definition: OBSOLETE because removed from Unimod. modification from Unimod Chemical derivative
diff avg: 253.25
diff formula: C 12 H 15 N 1 O 5
diff mono: 253.09502
formula: C 18 H 27 N 3 O 6
mass avg: 381.43
mass mono: 381.18997
origin: K
source: artifact
database_cross_reference: Unimod:273
has_obo_namespace: PSI-MOD
has_related_synonym: Xlink:SSD
has_related_synonym: covalent modification of lysine by cross-linking reagent
id: MOD:00593
comment: J. Prot. Chem. 2, 263-277, 1983
deprecated: true

Axiom
annotated source: covalent modification of lysine by omega-maleimido alkanoyl N-hydroxysuccinimido esters
annotated property: definition
annotated target: OBSOLETE because removed from Unimod. modification from Unimod Chemical derivative
database_cross_reference: Unimod:273

Axiom
annotated source: covalent modification of lysine by omega-maleimido alkanoyl N-hydroxysuccinimido esters
annotated property: has_related_synonym
annotated target: Xlink:SSD
has_synonym_type: Agreed label from MS community

Axiom
annotated source: covalent modification of lysine by omega-maleimido alkanoyl N-hydroxysuccinimido esters
annotated property: has_related_synonym
annotated target: covalent modification of lysine by cross-linking reagent
has_synonym_type: Description (full_name) from Unimod

residues isobaric at 113.047678 Da
type: Class
subclass of: residues isobaric at a resolution below 0.000001 Da
subclass of: residues isobaric at 113.0-113.1 Da
definition: Natural or modified resiues with a mass of 113.047678 Da.
has_obo_namespace: PSI-MOD
id: MOD:00594
in_subset: PSI-MOD-slim

Axiom
annotated source: residues isobaric at 113.047678 Da
annotated property: definition
annotated target: Natural or modified resiues with a mass of 113.047678 Da.
database_cross_reference: PubMed:18688235

monomannosylated residue
type: Class
subclass of: MOD_00727
subclass of: MOD_00761
definition: A protein modification that effectively replaces a hydrogen atom with an manose group through a glycosidic bond
diff avg: 162.14
diff formula: C 6 H 10 O 5
diff mono: 162.05283
origin: X
source: natural
has_exact_synonym: ManRes
has_obo_namespace: PSI-MOD
id: MOD:00595
in_subset: PSI-MOD-slim

Axiom
annotated source: monomannosylated residue
annotated property: definition
annotated target: A protein modification that effectively replaces a hydrogen atom with an manose group through a glycosidic bond
database_cross_reference: PubMed:18688235

Axiom
annotated source: monomannosylated residue
annotated property: has_exact_synonym
annotated target: ManRes
has_synonym_type: Short label curated by PSI-MOD

4-(2-aminoethyl)benzenesulfonyl fluoride derivatized residue
type: Class
subclass of: MOD_01652
definition: A protein modification that is produced by formation of an adduct with 4-(2-aminoethyl)benzenesulfonyl fluoride, AEBS.
diff avg: 183.23
diff formula: C 8 H 9 N 1 O 2 S 1
diff mono: 183.0354
origin: X
source: artifact
database_cross_reference: Unimod:276
has_exact_synonym: AEBSF
has_obo_namespace: PSI-MOD
has_related_synonym: AEBS
has_related_synonym: Aminoethylbenzenesulfonylation
id: MOD:00596
comment: From DeltaMass: Average Mass: 183 Average Mass Change:183 References:We have found that AEBSF modifies many proteins by covalent attachment, preferentially on Tyr, and to a lesser extent on Lys, His, and the amino-terminus. These modifications were identified by electrospray MS of the proteins (adds 183 Da per AEBS-group) and by peptide mapping and MS/MS. All the proteins we examined were modified after 24 hrs. at 4 C with 1 mM AEBSF in TRIS, pH 8.0. The reaction is 10-20x slower at pH 7; however AEBSF is quite stable in aqueous solution and the extent of to which the protein is modified continues to increase for several days. We have seen the addition of 10 or more AEBS-groups to proteins after prolonged storage. We found no equivalent modification from PMSF, probably because it degrades so quickly. We no longer use AEBSF, and urge caution to those who do. To address the problem, Boehringer Mannheim (now Roche Molecular Biochemicals) introduced Pefabloc PLUS which includes an additional component to compete for these side reactions. In our limited experience with Pefabloc PLUS, it reduces the +183 modifications, but does not always eliminate them. As a result, we prefer PMSF, despite its own set of drawbacks. We have never found PMSF-induced modification of proteins (except trypsin), probably due to its short half-life in aqeous solution.

Axiom
annotated source: 4-(2-aminoethyl)benzenesulfonyl fluoride derivatized residue
annotated property: definition
annotated target: A protein modification that is produced by formation of an adduct with 4-(2-aminoethyl)benzenesulfonyl fluoride, AEBS.
database_cross_reference: DeltaMass:235
database_cross_reference: PubMed:8597590
database_cross_reference: Unimod:276

Axiom
annotated source: 4-(2-aminoethyl)benzenesulfonyl fluoride derivatized residue
annotated property: has_exact_synonym
annotated target: AEBSF
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: 4-(2-aminoethyl)benzenesulfonyl fluoride derivatized residue
annotated property: has_related_synonym
annotated target: AEBS
has_synonym_type: Agreed label from MS community

Axiom
annotated source: 4-(2-aminoethyl)benzenesulfonyl fluoride derivatized residue
annotated property: has_related_synonym
annotated target: Aminoethylbenzenesulfonylation
has_synonym_type: Description (full_name) from Unimod

methyl methanethiosulfonate
type: Class
definition: OBSOLETE because Unimod entry 277 redundant with Unimod 39. Remap to MOD:00110.
term replaced by: MOD:00110
diff avg: 46.09
diff formula: C 1 H 2 S 1
diff mono: 45.98772
origin: C
source: artifact
database_cross_reference: Unimod:277
has_obo_namespace: PSI-MOD
id: MOD:00597
deprecated: true

Axiom
annotated source: methyl methanethiosulfonate
annotated property: definition
annotated target: OBSOLETE because Unimod entry 277 redundant with Unimod 39. Remap to MOD:00110.
database_cross_reference: Unimod:277

S-(2-hydroxyethyl)cysteine
type: Class
subclass of: MOD_00905
definition: A protein modification that effectively converts an L-cysteine residue to S-(2-hydroxyethyl)cysteine
diff avg: 44.05
diff formula: C 2 H 4 O 1
diff mono: 44.026215
formula: C 5 H 9 N 1 O 2 S 1
mass avg: 147.19
mass mono: 147.0354
origin: C
source: artifact
database_cross_reference: Unimod:278
has_obo_namespace: PSI-MOD
has_related_synonym: Ethanolation of Cys
has_related_synonym: Ethanolyl
id: MOD:00598
in_subset: PSI-MOD-slim
comment: This modification of cysteine is produced by the reagent iodoethanol with triethylphosphine [JSG].

Axiom
annotated source: S-(2-hydroxyethyl)cysteine
annotated property: definition
annotated target: A protein modification that effectively converts an L-cysteine residue to S-(2-hydroxyethyl)cysteine
database_cross_reference: PubMed:15351294
database_cross_reference: Unimod:278

Axiom
annotated source: S-(2-hydroxyethyl)cysteine
annotated property: has_related_synonym
annotated target: Ethanolation of Cys
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: S-(2-hydroxyethyl)cysteine
annotated property: has_related_synonym
annotated target: Ethanolyl
has_synonym_type: Agreed label from MS community

monomethylated residue
type: Class
subclass of: methylated residue
definition: A protein modification that effectively replaces one hydrogen atom with one methyl group.
diff avg: 14.03
diff formula: C 1 H 2
diff mono: 14.01565
origin: X
database_cross_reference: Unimod:34
has_exact_synonym: Me1Res
has_obo_namespace: PSI-MOD
has_related_synonym: Methyl
has_related_synonym: Methylation
id: MOD:00599
in_subset: PSI-MOD-slim

Axiom
annotated source: monomethylated residue
annotated property: definition
annotated target: A protein modification that effectively replaces one hydrogen atom with one methyl group.
database_cross_reference: PubMed:11875433
database_cross_reference: Unimod:34

Axiom
annotated source: monomethylated residue
annotated property: has_exact_synonym
annotated target: Me1Res
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: monomethylated residue
annotated property: has_related_synonym
annotated target: Methyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: monomethylated residue
annotated property: has_related_synonym
annotated target: Methylation
has_synonym_type: Description (full_name) from Unimod

L-glutamic acid 5-ethyl ester
type: Class
subclass of: MOD_00906
subclass of: MOD_01339
definition: A protein modification that effectively converts an L-glutamic acid residue to L-glutamate 5-ethyl ester.
diff avg: 28.05
diff formula: C 2 H 4
diff mono: 28.0313
formula: C 7 H 11 N 1 O 3
mass avg: 157.17
mass mono: 157.0739
origin: E
source: artifact
database_cross_reference: Unimod:280
has_exact_synonym: Ethyl
has_obo_namespace: PSI-MOD
has_related_synonym: Ethyl
has_related_synonym: Ethylation
id: MOD:00600
comment: From DeltaMass: Average Mass: 28 with no citation. The Unimod citation refers to the formation of glutamate ethyl ester and not to either lysine or N-terminal alkylation. For dimethylated residues, see MOD:00429 and its children [JSG].

Axiom
annotated source: L-glutamic acid 5-ethyl ester
annotated property: definition
annotated target: A protein modification that effectively converts an L-glutamic acid residue to L-glutamate 5-ethyl ester.
database_cross_reference: DeltaMass:0
database_cross_reference: PubMed:9629898
database_cross_reference: Unimod:280#E

Axiom
annotated source: L-glutamic acid 5-ethyl ester
annotated property: has_exact_synonym
annotated target: Ethyl
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: L-glutamic acid 5-ethyl ester
annotated property: has_related_synonym
annotated target: Ethyl
has_synonym_type: Agreed label from MS community

Axiom
annotated source: L-glutamic acid 5-ethyl ester
annotated property: has_related_synonym
annotated target: Ethylation
has_synonym_type: Description (full_name) from Unimod

cyclized residue
type: Class
subclass of: MOD_01156
definition: A protein modification that effectively produces an heterocyclic amino acid with a covalent bond between the side chain and either its alpha amino or 1-carboxyl group, possibly breaking the peptide chain.
has_exact_synonym: CycRes
has_obo_namespace: PSI-MOD
id: MOD:00601
in_subset: PSI-MOD-slim

Axiom
annotated source: cyclized residue
annotated property: definition
annotated target: A protein modification that effectively produces an heterocyclic amino acid with a covalent bond between the side chain and either its alpha amino or 1-carboxyl group, possibly breaking the peptide chain.
database_cross_reference: PubMed:18688235

Axiom
annotated source: cyclized residue
annotated property: has_exact_synonym
annotated target: CycRes
has_synonym_type: Short label curated by PSI-MOD

N-methylated residue
type: Class
subclass of: methylated residue
definition: A protein modification that effectively replaces a hydrogen atom of a residue amino or imino group with an methyl group.
has_exact_synonym: NMeRes
has_obo_namespace: PSI-MOD
id: MOD:00602
in_subset: PSI-MOD-slim

Axiom
annotated source: N-methylated residue
annotated property: definition
annotated target: A protein modification that effectively replaces a hydrogen atom of a residue amino or imino group with an methyl group.
database_cross_reference: PubMed:18688235

Axiom
annotated source: N-methylated residue
annotated property: has_exact_synonym
annotated target: NMeRes
has_synonym_type: Short label curated by PSI-MOD

N-ethylation
type: Class
definition: OBSOLETE because Unimod entry 283 is redundant with Unimod 280. Remap to MOD:00600
term replaced by: MOD:00600
diff avg: 28.05
diff formula: C 2 H 4
diff mono: 28.0313
origin: X
source: artifact
term spec: N-term
database_cross_reference: Unimod:283
has_obo_namespace: PSI-MOD
id: MOD:00603
deprecated: true

Axiom
annotated source: N-ethylation
annotated property: definition
annotated target: OBSOLETE because Unimod entry 283 is redundant with Unimod 280. Remap to MOD:00600
database_cross_reference: Unimod:283

2x(2)H monomethylated L-lysine
type: Class
subclass of: MOD_00839
subclass of: MOD_00912
subclass of: Restriction
  on property: derives from
  some values from: N6-methyl-L-lysine
definition: A protein modification that effectively converts an L-lysine residue to 2x(2)H labeled monomethylated L-lysine.
diff avg: 16.03
diff formula: C 1 (2)H 2
diff mono: 16.028204
formula: C 7 (1)H 12 (2)H 2 N 2 O 1
mass avg: 144.12
mass mono: 144.12317
origin: K
source: artifact
database_cross_reference: Unimod:284
has_obo_namespace: PSI-MOD
has_related_synonym: Deuterium Methylation of Lysine
has_related_synonym: Methyl:2H(2)
id: MOD:00604

Axiom
annotated source: 2x(2)H monomethylated L-lysine
annotated property: definition
annotated target: A protein modification that effectively converts an L-lysine residue to 2x(2)H labeled monomethylated L-lysine.
database_cross_reference: PubMed:15525938
database_cross_reference: Unimod:284

Axiom
annotated source: 2x(2)H monomethylated L-lysine
annotated property: has_related_synonym
annotated target: Deuterium Methylation of Lysine
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: 2x(2)H monomethylated L-lysine
annotated property: has_related_synonym
annotated target: Methyl:2H(2)
has_synonym_type: Agreed label from MS community

Sulfanilic Acid (SA), light C12
type: Class
subclass of: MOD_01426
definition: modification from Unimod Chemical derivative, C-Terminal/Glutamate/Aspartate sulfonation
diff avg: 155.0
diff formula: (12)C 6 H 5 N 1 O 2 S 1
diff mono: 155.0041
origin: X
source: artifact
term spec: C-term
database_cross_reference: Unimod:285
has_obo_namespace: PSI-MOD
has_related_synonym: Light Sulfanilic Acid (SA) C12
has_related_synonym: SulfanilicAcid
id: MOD:00605

Axiom
annotated source: Sulfanilic Acid (SA), light C12
annotated property: definition
annotated target: modification from Unimod Chemical derivative, C-Terminal/Glutamate/Aspartate sulfonation
database_cross_reference: Unimod:285

Axiom
annotated source: Sulfanilic Acid (SA), light C12
annotated property: has_related_synonym
annotated target: Light Sulfanilic Acid (SA) C12
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: Sulfanilic Acid (SA), light C12
annotated property: has_related_synonym
annotated target: SulfanilicAcid
has_synonym_type: Agreed label from MS community

Sulfanilic Acid (SA), heavy C13
type: Class
subclass of: MOD_01428
definition: modification from Unimod Chemical derivative
diff avg: 161.02
diff formula: (13)C 6 H 5 N 1 O 2 S 1
diff mono: 161.02423
origin: X
source: artifact
term spec: C-term
database_cross_reference: Unimod:286
has_obo_namespace: PSI-MOD
has_related_synonym: Heavy Sulfanilic Acid (SA) C13
has_related_synonym: SulfanilicAcid:13C(6)
id: MOD:00606

Axiom
annotated source: Sulfanilic Acid (SA), heavy C13
annotated property: definition
annotated target: modification from Unimod Chemical derivative
database_cross_reference: PubMed:9254591
database_cross_reference: Unimod:286

Axiom
annotated source: Sulfanilic Acid (SA), heavy C13
annotated property: has_related_synonym
annotated target: Heavy Sulfanilic Acid (SA) C13
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: Sulfanilic Acid (SA), heavy C13
annotated property: has_related_synonym
annotated target: SulfanilicAcid:13C(6)
has_synonym_type: Agreed label from MS community

dioxoindolealanine lactone
type: Class
subclass of: MOD_00918
definition: modification from Unimod Chemical derivative
diff avg: 30.99
diff formula: H -1 O 2
diff mono: 30.982004
formula: C 11 H 9 N 2 O 3
mass avg: 217.2
mass mono: 217.06131
origin: W
source: artifact
term spec: C-term
database_cross_reference: Unimod:288
has_obo_namespace: PSI-MOD
has_related_synonym: Trp->Oxolactone
has_related_synonym: Tryptophan oxidation to oxolactone
id: MOD:00607
comment: Unimod name, formula, and terminal specification corrected. Formula corresponded to uncleaved intermediate [JSG].

Axiom
annotated source: dioxoindolealanine lactone
annotated property: definition
annotated target: modification from Unimod Chemical derivative
database_cross_reference: PubMed:7949339
database_cross_reference: Unimod:288

Axiom
annotated source: dioxoindolealanine lactone
annotated property: has_related_synonym
annotated target: Trp->Oxolactone
has_synonym_type: Agreed label from MS community

Axiom
annotated source: dioxoindolealanine lactone
annotated property: has_related_synonym
annotated target: Tryptophan oxidation to oxolactone
has_synonym_type: Description (full_name) from Unimod

biotin polyethyleneoxide amine
type: Class
subclass of: MOD_00848
definition: modification from Unimod Chemical derivative
origin: X
source: artifact
database_cross_reference: Unimod:289
has_obo_namespace: PSI-MOD
has_related_synonym: Biotin polyethyleneoxide amine
has_related_synonym: Biotin-PEO-Amine
id: MOD:00608

Axiom
annotated source: biotin polyethyleneoxide amine
annotated property: definition
annotated target: modification from Unimod Chemical derivative
database_cross_reference: Unimod:289

Axiom
annotated source: biotin polyethyleneoxide amine
annotated property: has_related_synonym
annotated target: Biotin polyethyleneoxide amine
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: biotin polyethyleneoxide amine
annotated property: has_related_synonym
annotated target: Biotin-PEO-Amine
has_synonym_type: Interim label from Unimod

Pierce EZ-Link Biotin-HPDP modified L-cysteine
type: Class
subclass of: MOD_00848
subclass of: MOD_00905
definition: modification from Unimod Chemical derivative
diff avg: 428.61
diff formula: C 19 H 32 N 4 O 3 S 2
diff mono: 428.1916
formula: C 22 H 37 N 5 O 4 S 3
mass avg: 531.75
mass mono: 531.20074
origin: C
source: artifact
database_cross_reference: Unimod:290
has_obo_namespace: PSI-MOD
has_related_synonym: Biotin-HPDP
has_related_synonym: Pierce EZ-Link Biotin-HPDP
id: MOD:00609

Axiom
annotated source: Pierce EZ-Link Biotin-HPDP modified L-cysteine
annotated property: definition
annotated target: modification from Unimod Chemical derivative
database_cross_reference: Unimod:290

Axiom
annotated source: Pierce EZ-Link Biotin-HPDP modified L-cysteine
annotated property: has_related_synonym
annotated target: Biotin-HPDP
has_synonym_type: Interim label from Unimod

Axiom
annotated source: Pierce EZ-Link Biotin-HPDP modified L-cysteine
annotated property: has_related_synonym
annotated target: Pierce EZ-Link Biotin-HPDP
has_synonym_type: Description (full_name) from Unimod

cysteinyl mercury
type: Class
subclass of: MOD_00848
subclass of: MOD_01075
subclass of: MOD_02067
definition: modification from Unimod Chemical derivative
diff avg: 200.59
diff formula: Hg 1
diff mono: 201.97064
formula: C 3 H 5 Hg 1 N 1 O 1 S 1
mass avg: 303.73
mass mono: 304.97983
origin: C
source: artifact
database_cross_reference: Unimod:291
has_obo_namespace: PSI-MOD
has_related_synonym: Delta:Hg(1)
has_related_synonym: Mercury Mercaptan
id: MOD:00610

Axiom
annotated source: cysteinyl mercury
annotated property: definition
annotated target: modification from Unimod Chemical derivative
database_cross_reference: PubMed:10695144
database_cross_reference: Unimod:291

Axiom
annotated source: cysteinyl mercury
annotated property: has_related_synonym
annotated target: Delta:Hg(1)
has_synonym_type: Agreed label from MS community

Axiom
annotated source: cysteinyl mercury
annotated property: has_related_synonym
annotated target: Mercury Mercaptan
has_synonym_type: Description (full_name) from Unimod

iodouridine monophosphate derivatized residue
type: Class
subclass of: MOD_00848
definition: A protein modification that is produced by reaction of iodouridine monophosphate with a residue.
diff avg: 322.17
diff formula: C 9 H 11 N 2 O 9 P 1
diff mono: 322.0202
origin: X
source: artifact
database_cross_reference: Unimod:292
has_obo_namespace: PSI-MOD
has_related_synonym: Cross-link of (Iodo)-uracil MP with W,F,Y
has_related_synonym: IodoU-AMP
id: MOD:00611

Axiom
annotated source: iodouridine monophosphate derivatized residue
annotated property: definition
annotated target: A protein modification that is produced by reaction of iodouridine monophosphate with a residue.
database_cross_reference: PubMed:11112526
database_cross_reference: PubMed:11567090
database_cross_reference: PubMed:6540775
database_cross_reference: Unimod:292

Axiom
annotated source: iodouridine monophosphate derivatized residue
annotated property: has_related_synonym
annotated target: Cross-link of (Iodo)-uracil MP with W,F,Y
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: iodouridine monophosphate derivatized residue
annotated property: has_related_synonym
annotated target: IodoU-AMP
has_synonym_type: Agreed label from MS community

3-(carboxamidomethylthio)propanoylated residue
type: Class
subclass of: acylated residue
subclass of: MOD_00848
definition: A protein modification that is produced by derivatization of a residue with 3,3-dithiobis[sulfosuccinimidyl propanoate], DTSSP, or with Pierce EZ-Link Sulfo-NHS-SS-Biotin reagent, sulfosuccinimidyl 3-[(2-[biotinamido]ethyl)disulfanyl]propanoate, followed by reduction with dithiothreitol and then reaction with iodoacetamide.
diff avg: 145.18
diff formula: C 5 H 7 N 1 O 2 S 1
diff mono: 145.01974
origin: X
source: artifact
database_cross_reference: Unimod:293
has_obo_namespace: PSI-MOD
has_related_synonym: 3-(carbamidomethylthio)propanoyl
has_related_synonym: CAMthiopropanoyl
id: MOD:00612

Axiom
annotated source: 3-(carboxamidomethylthio)propanoylated residue
annotated property: definition
annotated target: A protein modification that is produced by derivatization of a residue with 3,3-dithiobis[sulfosuccinimidyl propanoate], DTSSP, or with Pierce EZ-Link Sulfo-NHS-SS-Biotin reagent, sulfosuccinimidyl 3-[(2-[biotinamido]ethyl)disulfanyl]propanoate, followed by reduction with dithiothreitol and then reaction with iodoacetamide.
database_cross_reference: PubMed:15121203
database_cross_reference: Unimod:293

Axiom
annotated source: 3-(carboxamidomethylthio)propanoylated residue
annotated property: has_related_synonym
annotated target: 3-(carbamidomethylthio)propanoyl
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: 3-(carboxamidomethylthio)propanoylated residue
annotated property: has_related_synonym
annotated target: CAMthiopropanoyl
has_synonym_type: Agreed label from MS community

biotinoyl-iodoacetyl-ethylenediamine
type: Class
subclass of: MOD_00848
subclass of: MOD_00905
definition: modification from Unimod Chemical derivative
diff avg: 326.42
diff formula: C 14 H 22 N 4 O 3 S 1
diff mono: 326.14127
formula: C 17 H 27 N 5 O 4 S 2
mass avg: 429.55
mass mono: 429.15045
origin: C
source: artifact
database_cross_reference: Unimod:294
has_obo_namespace: PSI-MOD
has_related_synonym: IED-Biotin
has_related_synonym: biotinoyl-iodoacetyl-ethylenediamine
id: MOD:00613

Axiom
annotated source: biotinoyl-iodoacetyl-ethylenediamine
annotated property: definition
annotated target: modification from Unimod Chemical derivative
database_cross_reference: PubMed:10906242
database_cross_reference: Unimod:294

Axiom
annotated source: biotinoyl-iodoacetyl-ethylenediamine
annotated property: has_related_synonym
annotated target: IED-Biotin
has_synonym_type: Agreed label from MS community

Axiom
annotated source: biotinoyl-iodoacetyl-ethylenediamine
annotated property: has_related_synonym
annotated target: biotinoyl-iodoacetyl-ethylenediamine
has_synonym_type: Description (full_name) from Unimod

fucosylated residue
type: Class
subclass of: MOD_00736
definition: A protein modification that effectively replaces a hydrogen atom of an amino acid residue or of a modifying group with a fucose (6-deoxy-D-galactose) group through a glycosidic bond.
diff avg: 146.14
diff formula: C 6 H 10 O 4
diff mono: 146.0579
origin: X
source: natural
database_cross_reference: GNO:G49112ZN
database_cross_reference: Unimod:295
has_exact_synonym: Fuc
has_obo_namespace: PSI-MOD
has_related_synonym: Fucose
has_related_synonym: dHex
id: MOD:00614
in_subset: PSI-MOD-slim

Axiom
annotated source: fucosylated residue
annotated property: definition
annotated target: A protein modification that effectively replaces a hydrogen atom of an amino acid residue or of a modifying group with a fucose (6-deoxy-D-galactose) group through a glycosidic bond.
database_cross_reference: PubMed:11344537
database_cross_reference: PubMed:15189151
database_cross_reference: Unimod:295

Axiom
annotated source: fucosylated residue
annotated property: has_exact_synonym
annotated target: Fuc
has_synonym_type: Short label curated by PSI-MOD

Axiom
annotated source: fucosylated residue
annotated property: has_related_synonym
annotated target: Fucose
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: fucosylated residue
annotated property: has_related_synonym
annotated target: dHex
has_synonym_type: Agreed label from MS community

4-sulfophenyl isothiocyante modification to N-term R
type: Class
definition: OBSOLETE because entry Unimod:261 site N-term R was abandoned. Remap to MOD:00584
term replaced by: MOD:00584
diff avg: 215.24
diff formula: C 7 H 5 N 1 O 3 S 2
diff mono: 214.97108
origin: R
source: artifact
term spec: N-term
database_cross_reference: Unimod:261
has_obo_namespace: PSI-MOD
id: MOD:00615
deprecated: true

Axiom
annotated source: 4-sulfophenyl isothiocyante modification to N-term R
annotated property: definition
annotated target: OBSOLETE because entry Unimod:261 site N-term R was abandoned. Remap to MOD:00584
database_cross_reference: PubMed:14689565
database_cross_reference: Unimod:261

residues isobaric at a resolution below 0.1 Da
type: Class
subclass of: protein modification categorized by isobaric sets
definition: Natural or modified residues that are isobaric at a resolution below 0.1 Da.
has_obo_namespace: PSI-MOD
id: MOD:00616
in_subset: PSI-MOD-slim

Axiom
annotated source: residues isobaric at a resolution below 0.1 Da
annotated property: definition
annotated target: Natural or modified residues that are isobaric at a resolution below 0.1 Da.
database_cross_reference: PubMed:18688235

3x(2)H residue methyl ester
type: Class
subclass of: MOD_00839
definition: A protein modification that effectively converts a residue containing common isotopes to a 3x(2)H labeled residue methyl ester.
diff avg: 17.03
diff formula: C 1 (1)H -1 (2)H 3
diff mono: 17.03448
origin: X
source: artifact
term spec: C-term
database_cross_reference: Unimod:298
has_exact_synonym: ctermpeptrideuteromethyl
has_obo_namespace: PSI-MOD
has_related_synonym: Methyl:2H(3)
has_related_synonym: deuterated methyl ester
id: MOD:00617

Axiom
annotated source: 3x(2)H residue methyl ester
annotated property: definition
annotated target: A protein modification that effectively converts a residue containing common isotopes to a 3x(2)H labeled residue methyl ester.
database_cross_reference: OMSSA:21
database_cross_reference: Unimod:298

Axiom
annotated source: 3x(2)H residue methyl ester
annotated property: has_exact_synonym
annotated target: ctermpeptrideuteromethyl
has_synonym_type: Short label from OMSSA

Axiom
annotated source: 3x(2)H residue methyl ester
annotated property: has_related_synonym
annotated target: Methyl:2H(3)
has_synonym_type: Agreed label from MS community

Axiom
annotated source: 3x(2)H residue methyl ester
annotated property: has_related_synonym
annotated target: deuterated methyl ester
has_synonym_type: Description (full_name) from Unimod

tryptophan carboxylation
type: Class
subclass of: MOD_00918
subclass of: MOD_01152
definition: modification from Unimod Chemical derivative
diff avg: 44.01
diff formula: C 1 O 2
diff mono: 43.98983
formula: C 12 H 10 N 2 O 3
mass avg: 230.22
mass mono: 230.06914
origin: W
source: artifact
database_cross_reference: Unimod:299
has_obo_namespace: PSI-MOD
has_related_synonym: Carboxy
has_related_synonym: Carboxylation
id: MOD:00618
comment: There is no literature citation for this Unimod entry [JSG].

Axiom
annotated source: tryptophan carboxylation
annotated property: definition
annotated target: modification from Unimod Chemical derivative
database_cross_reference: Unimod:299#W

Axiom
annotated source: tryptophan carboxylation
annotated property: has_related_synonym
annotated target: Carboxy
has_synonym_type: Interim label from Unimod

Axiom
annotated source: tryptophan carboxylation
annotated property: has_related_synonym
annotated target: Carboxylation
has_synonym_type: Description (full_name) from Unimod

hydroxylethanone
type: Class
definition: OBSOLETE because entry 300 is redundant with Unimod 6 remap to MOD:01328
term replaced by: MOD:01328
diff avg: 58.04
diff formula: C 2 H 2 O 2
diff mono: 58.005478
origin: W
source: artifact
database_cross_reference: Unimod:300
has_obo_namespace: PSI-MOD
id: MOD:00619
deprecated: true

Axiom
annotated source: hydroxylethanone
annotated property: definition
annotated target: OBSOLETE because entry 300 is redundant with Unimod 6 remap to MOD:01328
database_cross_reference: Unimod:300

cysteine monobromobimane derivative
type: Class
subclass of: MOD_00848
subclass of: MOD_00905
definition: modification from Unimod Chemical derivative
diff avg: 190.2
diff formula: C 10 H 10 N 2 O 2
diff mono: 190.07423
formula: C 13 H 15 N 3 O 3 S 1
mass avg: 293.34
mass mono: 293.0834
origin: C
source: artifact
database_cross_reference: Unimod:301
has_obo_namespace: PSI-MOD
has_related_synonym: Bromobimane
has_related_synonym: Monobromobimane derivative
id: MOD:00620
comment: 1-(bromomethyl)-2,6,7-trimethylpyrazolo[1,2-a]pyrazole-3,5-dione, C 10 H 11 Br 1 N 2 O 2.

Axiom
annotated source: cysteine monobromobimane derivative
annotated property: definition
annotated target: modification from Unimod Chemical derivative
database_cross_reference: PubMed:7856876
database_cross_reference: Unimod:301

Axiom
annotated source: cysteine monobromobimane derivative
annotated property: has_related_synonym
annotated target: Bromobimane
has_synonym_type: Agreed label from MS community

Axiom
annotated source: cysteine monobromobimane derivative
annotated property: has_related_synonym
annotated target: Monobromobimane derivative
has_synonym_type: Description (full_name) from Unimod

menadione quinone derivative
type: Class
subclass of: MOD_00848
definition: modification from Unimod Chemical derivative
diff avg: 170.17
diff formula: C 11 H 6 O 2
diff mono: 170.03677
origin: X
source: artifact
database_cross_reference: Unimod:302
has_obo_namespace: PSI-MOD
has_related_synonym: Menadione
has_related_synonym: Menadione quinone derivative
id: MOD:00621

Axiom
annotated source: menadione quinone derivative
annotated property: definition
annotated target: modification from Unimod Chemical derivative
database_cross_reference: PubMed:15939799
database_cross_reference: Unimod:302

Axiom
annotated source: menadione quinone derivative
annotated property: has_related_synonym
annotated target: Menadione
has_synonym_type: Interim label from Unimod

Axiom
annotated source: menadione quinone derivative
annotated property: has_related_synonym
annotated target: Menadione quinone derivative
has_synonym_type: Description (full_name) from Unimod

cysteine mercaptoethanol
type: Class
subclass of: MOD_00848
subclass of: MOD_00905
definition: modification from Unimod Chemical derivative
diff avg: 76.11
diff formula: C 2 H 4 O 1 S 1
diff mono: 75.99828
formula: C 5 H 9 N 1 O 2 S 2
mass avg: 179.25
mass mono: 179.00748
origin: C
source: artifact
database_cross_reference: Unimod:303
has_exact_synonym: Beta mercaptoethanol adduct
has_obo_namespace: PSI-MOD
has_related_synonym: Cysteine mercaptoethanol
has_related_synonym: DeStreak
id: MOD:00622
comment: From DeltaMass: Average Mass: 76 Average Mass Change:76 PubMed:8019414.

Axiom
annotated source: cysteine mercaptoethanol
annotated property: definition
annotated target: modification from Unimod Chemical derivative
database_cross_reference: DeltaMass:80
database_cross_reference: PubMed:12442261
database_cross_reference: Unimod:303

Axiom
annotated source: cysteine mercaptoethanol
annotated property: has_exact_synonym
annotated target: Beta mercaptoethanol adduct
has_synonym_type: Label from MS DeltaMass

Axiom
annotated source: cysteine mercaptoethanol
annotated property: has_related_synonym
annotated target: Cysteine mercaptoethanol
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: cysteine mercaptoethanol
annotated property: has_related_synonym
annotated target: DeStreak
has_synonym_type: Agreed label from MS community

fucosylated biantennary (-2 galactose) N4-glycosylated asparagine
type: Class
subclass of: N4-glycosyl-L-asparagine
subclass of: MOD_00725
definition: modification from Unimod N-linked glycosylation
diff avg: 1443.33
diff formula: C 56 H 90 N 4 O 39
diff mono: 1442.5182
formula: C 60 H 96 N 6 O 41
mass avg: 1557.43
mass mono: 1556.5612
origin: N
source: natural
database_cross_reference: GNO:G25987BV
database_cross_reference: Unimod:305
has_obo_namespace: PSI-MOD
has_related_synonym: Fucosylated biantennary (-2 galactose)
has_related_synonym: dHex(1)Hex(3)HexNAc(4)
id: MOD:00623

Axiom
annotated source: fucosylated biantennary (-2 galactose) N4-glycosylated asparagine
annotated property: definition
annotated target: modification from Unimod N-linked glycosylation
database_cross_reference: Unimod:305

Axiom
annotated source: fucosylated biantennary (-2 galactose) N4-glycosylated asparagine
annotated property: has_related_synonym
annotated target: Fucosylated biantennary (-2 galactose)
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: fucosylated biantennary (-2 galactose) N4-glycosylated asparagine
annotated property: has_related_synonym
annotated target: dHex(1)Hex(3)HexNAc(4)
has_synonym_type: Agreed label from MS community

residues isobaric at 113.0-113.1 Da
type: Class
subclass of: residues isobaric at a resolution below 0.1 Da
definition: Natural or modified residues with a mass of 113.0-113.1 Da.
has_obo_namespace: PSI-MOD
id: MOD:00624
in_subset: PSI-MOD-slim

Axiom
annotated source: residues isobaric at 113.0-113.1 Da
annotated property: definition
annotated target: Natural or modified residues with a mass of 113.0-113.1 Da.
database_cross_reference: PubMed:18688235

N-methylmaleimide derivatized residue
type: Class
subclass of: MOD_00848
definition: modification from Unimod Chemical derivative
diff avg: 111.1
diff formula: C 5 H 5 N 1 O 2
diff mono: 111.03203
origin: X
source: artifact
database_cross_reference: Unimod:314
has_obo_namespace: PSI-MOD
has_related_synonym: Nmethylmaleimide
id: MOD:00625

Axiom
annotated source: N-methylmaleimide derivatized residue
annotated property: definition
annotated target: modification from Unimod Chemical derivative
database_cross_reference: Unimod:314

Axiom
annotated source: N-methylmaleimide derivatized residue
annotated property: has_related_synonym
annotated target: Nmethylmaleimide
has_synonym_type: Agreed label from MS community

Axiom
annotated source: N-methylmaleimide derivatized residue
annotated property: has_related_synonym
annotated target: Nmethylmaleimide
has_synonym_type: Description (full_name) from Unimod

fluorescein-5-thiosemicarbazide modified residue
type: Class
subclass of: MOD_00848
definition: modification from Unimod Chemical derivative
diff avg: 421.43
diff formula: C 21 H 15 N 3 O 5 S 1
diff mono: 421.07324
origin: X
source: artifact
database_cross_reference: Unimod:478
has_obo_namespace: PSI-MOD
has_related_synonym: FTC
has_related_synonym: fluorescein-5-thiosemicarbazide
id: MOD:00626

Axiom
annotated source: fluorescein-5-thiosemicarbazide modified residue
annotated property: definition
annotated target: modification from Unimod Chemical derivative
database_cross_reference: PubMed:2883911
database_cross_reference: Unimod:478

Axiom
annotated source: fluorescein-5-thiosemicarbazide modified residue
annotated property: has_related_synonym
annotated target: FTC
has_synonym_type: Agreed label from MS community

Axiom
annotated source: fluorescein-5-thiosemicarbazide modified residue
annotated property: has_related_synonym
annotated target: fluorescein-5-thiosemicarbazide
has_synonym_type: Description (full_name) from Unimod

2,5-dimethylpyrrole lysine from 2,5-hexanedione adduct
type: Class
subclass of: MOD_00848
subclass of: MOD_00912
definition: modification from Unimod Chemical derivative
diff avg: 78.11
diff formula: C 6 H 6
diff mono: 78.04695
formula: C 12 H 18 N 2 O 1
mass avg: 206.29
mass mono: 206.1419
origin: K
source: artifact
database_cross_reference: Unimod:316
has_exact_synonym: (2S)-2-amino-6-(2,5-dimethylpyrrolidin-1-yl)hexanoic acid
has_exact_synonym: 6-(2,5-dimethylpyrrolidin-1-yl)norleucine
has_obo_namespace: PSI-MOD
has_related_synonym: 2,5-dimethypyrrole
has_related_synonym: DimethylpyrroleAdduct
id: MOD:00627
comment: There is no citation for this Unimod entry. Add PubMed:7981420, correct spelling [JSG].

Axiom
annotated source: 2,5-dimethylpyrrole lysine from 2,5-hexanedione adduct
annotated property: definition
annotated target: modification from Unimod Chemical derivative
database_cross_reference: Unimod:316

Axiom
annotated source: 2,5-dimethylpyrrole lysine from 2,5-hexanedione adduct
annotated property: has_exact_synonym
annotated target: (2S)-2-amino-6-(2,5-dimethylpyrrolidin-1-yl)hexanoic acid
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: 2,5-dimethylpyrrole lysine from 2,5-hexanedione adduct
annotated property: has_exact_synonym
annotated target: 6-(2,5-dimethylpyrrolidin-1-yl)norleucine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: 2,5-dimethylpyrrole lysine from 2,5-hexanedione adduct
annotated property: has_related_synonym
annotated target: 2,5-dimethypyrrole
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: 2,5-dimethylpyrrole lysine from 2,5-hexanedione adduct
annotated property: has_related_synonym
annotated target: DimethylpyrroleAdduct
has_synonym_type: Agreed label from MS community

Hex2
type: Class
subclass of: MOD_00725
definition: a protein modification that effectively replaces a hydrogen atom of an amino acid residue or of a modifying group with two hexose sugar groups through glycosidic bonds
diff avg: 324.28
diff formula: C 12 H 20 O 10
diff mono: 324.10565
origin: X
source: natural
database_cross_reference: GNO:G90627TW
has_obo_namespace: PSI-MOD
id: MOD:00628

Axiom
annotated source: Hex2
annotated property: definition
annotated target: a protein modification that effectively replaces a hydrogen atom of an amino acid residue or of a modifying group with two hexose sugar groups through glycosidic bonds
database_cross_reference: PubMed:18688235

MDA adduct +62
type: Class
subclass of: MOD_00848
subclass of: MOD_00912
definition: modification from Unimod Chemical derivative
diff avg: 62.07
diff formula: C 5 H 2
diff mono: 62.01565
formula: C 11 H 14 N 2 O 1
mass avg: 190.25
mass mono: 190.11061
origin: K
source: artifact
database_cross_reference: Unimod:318
has_obo_namespace: PSI-MOD
has_related_synonym: Delta:H(2)C(5)
has_related_synonym: MDA adduct +62
id: MOD:00629
comment: Usually major adduct formed from malondialdehyde (MDA) with the amino group of lysine residues [UniProt].

Axiom
annotated source: MDA adduct +62
annotated property: definition
annotated target: modification from Unimod Chemical derivative
database_cross_reference: Unimod:318

Axiom
annotated source: MDA adduct +62
annotated property: has_related_synonym
annotated target: Delta:H(2)C(5)
has_synonym_type: Agreed label from MS community

Axiom
annotated source: MDA adduct +62
annotated property: has_related_synonym
annotated target: MDA adduct +62
has_synonym_type: Description (full_name) from Unimod

C3-H2-O adduct (+54 amu) of malondialdehyde with lysine or methylglyoxal with arginine.
type: Class
subclass of: MOD_00848
definition: modification from Unimod Chemical derivative
diff avg: 54.05
diff formula: C 3 H 2 O 1
diff mono: 54.010567
origin: X
source: artifact
database_cross_reference: Unimod:319
has_obo_namespace: PSI-MOD
has_related_synonym: Delta:H(2)C(3)O(1)
has_related_synonym: MDA adduct +54
id: MOD:00630
comment: This is not a legitimate ontological entry and will become obsolete when the children are reassigned [JSG]

Axiom
annotated source: C3-H2-O adduct (+54 amu) of malondialdehyde with lysine or methylglyoxal with arginine.
annotated property: definition
annotated target: modification from Unimod Chemical derivative
database_cross_reference: PubMed:9328283
database_cross_reference: Unimod:319

Axiom
annotated source: C3-H2-O adduct (+54 amu) of malondialdehyde with lysine or methylglyoxal with arginine.
annotated property: has_related_synonym
annotated target: Delta:H(2)C(3)O(1)
has_synonym_type: Agreed label from MS community

Axiom
annotated source: C3-H2-O adduct (+54 amu) of malondialdehyde with lysine or methylglyoxal with arginine.
annotated property: has_related_synonym
annotated target: MDA adduct +54
has_synonym_type: Description (full_name) from Unimod

hydrolyzed N-ethylmaleimide adduct
type: Class
subclass of: MOD_00848
definition: modification from Unimod Chemical derivative
diff avg: 143.14
diff formula: C 6 H 9 N 1 O 3
diff mono: 143.05824
origin: X
source: artifact
database_cross_reference: Unimod:320
has_obo_namespace: PSI-MOD
has_related_synonym: Nethylmaleimide+water
has_related_synonym: Nethylmaleimidehydrolysis
id: MOD:00631
comment: N-ethylmaeimide adduct + H20 (a mixture of isobaric products) [JSG].

Axiom
annotated source: hydrolyzed N-ethylmaleimide adduct
annotated property: definition
annotated target: modification from Unimod Chemical derivative
database_cross_reference: Unimod:320

Axiom
annotated source: hydrolyzed N-ethylmaleimide adduct
annotated property: has_related_synonym
annotated target: Nethylmaleimide+water
has_synonym_type: Agreed label from MS community

Axiom
annotated source: hydrolyzed N-ethylmaleimide adduct
annotated property: has_related_synonym
annotated target: Nethylmaleimidehydrolysis
has_synonym_type: Description (full_name) from Unimod

N-succinimide
type: Class
definition: OBSOLETE because this chemical derivative modification from Unimod 321 is deprecated.
diff avg: -17.01
diff formula: H -1 O -1
diff mono: -17.00274
origin: N
source: artifact
database_cross_reference: Unimod:321
has_obo_namespace: PSI-MOD
id: MOD:00632
deprecated: true

Axiom
annotated source: N-succinimide
annotated property: definition
annotated target: OBSOLETE because this chemical derivative modification from Unimod 321 is deprecated.
database_cross_reference: Unimod:321

bis-N-I-sulfonerahodamine
type: Class
subclass of: MOD_00848
subclass of: MOD_00905
definition: modification from Unimod Chemical derivative
diff avg: 713.57
diff formula: C 31 H 30 I 1 N 4 O 6 S 1
diff mono: 713.0931
formula: C 34 H 35 I 1 N 5 O 7 S 2
mass avg: 816.71
mass mono: 816.10223
origin: C
source: artifact
database_cross_reference: Unimod:323
has_exact_synonym: bis-((N-iodoacetyl)piperazinyl)sulfonerhodamine
has_obo_namespace: PSI-MOD
has_related_synonym: Xlink:B10621
has_related_synonym: bis-N-I-sulfonerahodamine
id: MOD:00633
comment: Invitrogen B-10621, a red fluorescent cross-linking reagent (only link to Cys is indicated) [Unimod].

Axiom
annotated source: bis-N-I-sulfonerahodamine
annotated property: definition
annotated target: modification from Unimod Chemical derivative
database_cross_reference: Unimod:323

Axiom
annotated source: bis-N-I-sulfonerahodamine
annotated property: has_exact_synonym
annotated target: bis-((N-iodoacetyl)piperazinyl)sulfonerhodamine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: bis-N-I-sulfonerahodamine
annotated property: has_related_synonym
annotated target: Xlink:B10621
has_synonym_type: Agreed label from MS community

Axiom
annotated source: bis-N-I-sulfonerahodamine
annotated property: has_related_synonym
annotated target: bis-N-I-sulfonerahodamine
has_synonym_type: Description (full_name) from Unimod

dimethyl 3,3'-dithiobispropionimidate
type: Class
subclass of: MOD_00848
definition: modification from Unimod Chemical derivative
diff avg: 123.6
diff formula: C 3 Cl 1 H 6 N 1 S 1
diff mono: 122.99095
origin: X
source: artifact
database_cross_reference: Unimod:324
has_obo_namespace: PSI-MOD
has_related_synonym: DTBP
has_related_synonym: dimethyl 3,3'-dithiobispropionimidate
id: MOD:00634
comment: Pierce reagent, needs sites for N, Q, R, K, and N-term [JSG].

Axiom
annotated source: dimethyl 3,3'-dithiobispropionimidate
annotated property: definition
annotated target: modification from Unimod Chemical derivative
database_cross_reference: PubMed:770170
database_cross_reference: Unimod:324

Axiom
annotated source: dimethyl 3,3'-dithiobispropionimidate
annotated property: has_related_synonym
annotated target: DTBP
has_synonym_type: Interim label from Unimod

Axiom
annotated source: dimethyl 3,3'-dithiobispropionimidate
annotated property: has_related_synonym
annotated target: dimethyl 3,3'-dithiobispropionimidate
has_synonym_type: Description (full_name) from Unimod

10-fluoroethoxyphosphinyl-N-(biotinamidopentyl)decanamide
type: Class
subclass of: MOD_00848
subclass of: MOD_00861
subclass of: MOD_00916
definition: modification from Unimod Chemical derivative
diff avg: 572.75
diff formula: C 27 H 49 N 4 O 5 P 1 S 1
diff mono: 572.3161
formula: C 30 H 54 N 5 O 7 P 1 S 1
mass avg: 659.82
mass mono: 659.34814
origin: S
source: artifact
database_cross_reference: Unimod:325
has_obo_namespace: PSI-MOD
has_related_synonym: 10-ethoxyphosphinyl-N-(biotinamidopentyl)decanamide
has_related_synonym: FP-Biotin
id: MOD:00635

Axiom
annotated source: 10-fluoroethoxyphosphinyl-N-(biotinamidopentyl)decanamide
annotated property: definition
annotated target: modification from Unimod Chemical derivative
database_cross_reference: PubMed:10611275
database_cross_reference: Unimod:325

Axiom
annotated source: 10-fluoroethoxyphosphinyl-N-(biotinamidopentyl)decanamide
annotated property: has_related_synonym
annotated target: 10-ethoxyphosphinyl-N-(biotinamidopentyl)decanamide
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: 10-fluoroethoxyphosphinyl-N-(biotinamidopentyl)decanamide
annotated property: has_related_synonym
annotated target: FP-Biotin
has_synonym_type: Interim label from Unimod

S-ethylcysteine (Ser)
type: Class
subclass of: MOD_00916
definition: A protein modification that effectively converts an L-serine residue to S-ethylcysteine.
diff avg: 44.11
diff formula: C 2 H 4 O -1 S 1
diff mono: 44.008457
formula: C 5 H 9 N 1 O 1 S 1
mass avg: 131.19
mass mono: 131.04048
origin: S
source: artifact
database_cross_reference: Unimod:327
has_obo_namespace: PSI-MOD
has_related_synonym: Delta:H(4)C(2)O(-1)S(1)
has_related_synonym: S-Ethylcystine from Serine
id: MOD:00636
comment: Modification from Unimod. Phosphoserine is converted to dehydroalanine then by Michael addition of ethanethiol to S-ethylcysteine. Needs parent and sibling for S-ethyl-cysteine.

Axiom
annotated source: S-ethylcysteine (Ser)
annotated property: definition
annotated target: A protein modification that effectively converts an L-serine residue to S-ethylcysteine.
database_cross_reference: Unimod:327

Axiom
annotated source: S-ethylcysteine (Ser)
annotated property: has_related_synonym
annotated target: Delta:H(4)C(2)O(-1)S(1)
has_synonym_type: Agreed label from MS community

Axiom
annotated source: S-ethylcysteine (Ser)
annotated property: has_related_synonym
annotated target: S-Ethylcystine from Serine
has_synonym_type: Description (full_name) from Unimod

1x(13)C,3x(2)H labeled monomethylated L-arginine
type: Class
subclass of: MOD_00839
subclass of: MOD_00842
subclass of: MOD_00902
subclass of: Restriction
  on property: derives from
  some values from: monomethylated L-arginine
definition: A protein modification that effectively replaces one hydrogen atom of an L-arginine residue with a (13)C,3x(2)H labeled methyl group to form a 1x(13)C,3x(2)H labeled monomethylated L-arginine.
diff avg: 18.04
diff formula: (13)C 1 (1)H -1 (2)H 3
diff mono: 18.037834
formula: (12)C 6 (13)C 1 (1)H 11 (2)H 3 N 4 O 1
mass avg: 174.14
mass mono: 174.13895
origin: R
source: artifact
database_cross_reference: Unimod:329
has_obo_namespace: PSI-MOD
has_related_synonym: Methyl:2H(3)13C(1)
has_related_synonym: monomethylated arginine
id: MOD:00637

Axiom
annotated source: 1x(13)C,3x(2)H labeled monomethylated L-arginine
annotated property: definition
annotated target: A protein modification that effectively replaces one hydrogen atom of an L-arginine residue with a (13)C,3x(2)H labeled methyl group to form a 1x(13)C,3x(2)H labeled monomethylated L-arginine.
database_cross_reference: Unimod:329

Axiom
annotated source: 1x(13)C,3x(2)H labeled monomethylated L-arginine
annotated property: has_related_synonym
annotated target: Methyl:2H(3)13C(1)
has_synonym_type: Agreed label from MS community

Axiom
annotated source: 1x(13)C,3x(2)H labeled monomethylated L-arginine
annotated property: has_related_synonym
annotated target: monomethylated arginine
has_synonym_type: Description (full_name) from Unimod

2x(13)C,6x(2)H labeled dimethylated L-arginine
type: Class
subclass of: MOD_00839
subclass of: MOD_00842
subclass of: MOD_00902
subclass of: Restriction
  on property: derives from
  some values from: MOD_00783
definition: A protein modification that effectively replaces two hydrogen atoms of an L-arginine residue with two (13)C,3x(2)H labeled methyl groups to form a 2x(13)C,6x(2)H labeled dimethylated L-arginine.
diff avg: 36.08
diff formula: (13)C 2 (1)H -2 (2)H 6
diff mono: 36.07567
formula: (12)C 6 (13)C 2 (1)H 10 (2)H 6 N 4 O 1
mass avg: 192.18
mass mono: 192.17679
origin: R
source: artifact
database_cross_reference: Unimod:330
has_obo_namespace: PSI-MOD
has_related_synonym: Dimethyl:2H(6)13C(2)
has_related_synonym: dimethylated arginine
id: MOD:00638

Axiom
annotated source: 2x(13)C,6x(2)H labeled dimethylated L-arginine
annotated property: definition
annotated target: A protein modification that effectively replaces two hydrogen atoms of an L-arginine residue with two (13)C,3x(2)H labeled methyl groups to form a 2x(13)C,6x(2)H labeled dimethylated L-arginine.
database_cross_reference: PubMed:15782174
database_cross_reference: Unimod:330

Axiom
annotated source: 2x(13)C,6x(2)H labeled dimethylated L-arginine
annotated property: has_related_synonym
annotated target: Dimethyl:2H(6)13C(2)
has_synonym_type: Agreed label from MS community

Axiom
annotated source: 2x(13)C,6x(2)H labeled dimethylated L-arginine
annotated property: has_related_synonym
annotated target: dimethylated arginine
has_synonym_type: Description (full_name) from Unimod

thiophosphate labeled with biotin-HPDP
type: Class
subclass of: MOD_00848
subclass of: MOD_00861
definition: modification from Unimod Chemical derivative
diff avg: 525.66
diff formula: C 19 H 34 N 4 O 5 P 1 S 3
diff mono: 525.1429
origin: X
source: artifact
database_cross_reference: Unimod:332
has_obo_namespace: PSI-MOD
has_related_synonym: Thiophos-S-S-biotin
has_related_synonym: thiophosphate labeled with biotin-HPDP
id: MOD:00639

Axiom
annotated source: thiophosphate labeled with biotin-HPDP
annotated property: definition
annotated target: modification from Unimod Chemical derivative
database_cross_reference: Unimod:332

Axiom
annotated source: thiophosphate labeled with biotin-HPDP
annotated property: has_related_synonym
annotated target: Thiophos-S-S-biotin
has_synonym_type: Agreed label from MS community

Axiom
annotated source: thiophosphate labeled with biotin-HPDP
annotated property: has_related_synonym
annotated target: thiophosphate labeled with biotin-HPDP
has_synonym_type: Description (full_name) from Unimod

6-N-biotinylaminohexyl isopropyl phosphorofluoridate
type: Class
subclass of: MOD_00848
subclass of: MOD_00861
subclass of: MOD_00916
definition: modification from Unimod Chemical derivative
diff avg: 467.54
diff formula: C 19 F 1 H 35 N 3 O 5 P 1 S 1
diff mono: 467.2019
formula: C 22 F 1 H 40 N 4 O 7 P 1 S 1
mass avg: 554.62
mass mono: 554.23395
origin: S
source: artifact
database_cross_reference: Unimod:333
has_obo_namespace: PSI-MOD
has_related_synonym: 6-N-biotinylaminohexyl isopropyl phosphate
has_related_synonym: Can-FP-biotin
id: MOD:00640

Axiom
annotated source: 6-N-biotinylaminohexyl isopropyl phosphorofluoridate
annotated property: definition
annotated target: modification from Unimod Chemical derivative
database_cross_reference: Unimod:333

Axiom
annotated source: 6-N-biotinylaminohexyl isopropyl phosphorofluoridate
annotated property: has_related_synonym
annotated target: 6-N-biotinylaminohexyl isopropyl phosphate
has_synonym_type: Description (full_name) from Unimod

Axiom
annotated source: 6-N-biotinylaminohexyl isopropyl phosphorofluoridate
annotated property: has_related_synonym
annotated target: Can-FP-biotin
has_synonym_type: Interim label from Unimod

CAMthiopropanoyl of Lys
type: Class
definition: OBSOLETE because Unimod entry 334 is merged with Unimod 293. Remap to MOD:00612
term replaced by: MOD:00612
diff avg: 146.18
diff formula: C 5 H 8 N 1 O 2 S 1
diff mono: 146.02757
origin: K
source: artifact
database_cross_reference: Unimod:334
has_obo_namespace: PSI-MOD
id: MOD:00641
deprecated: true

Axiom
annotated source: CAMthiopropanoyl of Lys
annotated property: definition
annotated target: OBSOLETE because Unimod entry 334 is merged with Unimod 293. Remap to MOD:00612
database_cross_reference: Unimod:334

reduced 4-hydroxynonenal adduct
type: Class
subclass of: MOD_00848
subclass of: MOD_01155
subclass of: Restriction
  on property: derives from
  some values from: 4-hydroxynonenal adduct
definition: A protein modification produced by formation of an adduct of a residue with 4-hydroxynonenal artificially reduced by a reagent such as NaBH4.
diff avg: 158.24
diff formula: C 9 H 18 O 2
diff mono: 158.13068
origin: X
source: artifact
database_cross_reference: Unimod:335
has_obo_namespace: PSI-MOD
has_related_synonym: HNE+Delta:H(2)
has_related_synonym: reduced 4-Hydroxynonenal
id: MOD:00642
comment: 4-hydroxynonenal, a toxic lipid aldehyde, is a product of the hydroperoxide beta-cleavage degradation of omega-6 polyunsaturated fatty acids, such as arachidonic and linoleic acids [JSG].

Axiom
annotated source: reduced 4-hydroxynonenal adduct
annotated property: definition
annotated target: A protein modification produced by formation of an adduct of a residue with 4-hydroxynonenal artificially reduced by a reagent such as NaBH4.
database_cross_reference: PubMed:11910026
database_cross_reference: PubMed:15133838
database_cross_reference: Unimod:335

Axiom
annotated source: reduced 4-hydroxynonenal adduct
annotated property: has_related_synonym
annotated target: HNE+Delta:H(2)
has_synonym_type: Agreed label from MS community

Axiom
annotated source: reduced 4-hydroxynonenal adduct
annotated property: has_related_synonym
annotated target: reduced 4-Hydroxynonenal
has_synonym_type: Description (full_name) from Unimod

methylamine Michael addition derivatized residue
type: Class
subclass of: MOD_00848
definition: modification from Unimod Artifact
diff avg: 13.04
diff formula: C 1 H 3 N 1 O -1
diff mono: 13.031634
origin: X
source: artifact
database_cross_reference: Unimod:337
has_obo_namespace: PSI-MOD
has_related_synonym: Methylamine
has_related_synonym: Michael addition with methylamine
id: MOD:00643

Axiom
annotated source: methylamine Michael addition derivatized residue
annotated property: definition
annotated target: modification from Unimod Artifact
database_cross_reference: PubMed:11968134
database_cross_reference: Unimod:337

Axiom
annotated source: methylamine Michael addition derivatized residue
annotated property: has_related_synonym
annotated target: Methylamine
has_synonym_type: Agreed label from MS community

Axiom
annotated source: methylamine Michael addition derivatized residue
annotated property: has_related_synonym
annotated target: Michael addition with methylamine
has_synonym_type: Description (full_name) from Unimod

mono O-acetylated residue
type: Class
subclass of: monoacetylated residue
subclass of: MOD_00671
definition: A protein modification that effectively replaces a residue hydroxyl group with an acetoxy group.
diff avg: 42.04
diff formula: C 2 H 2 O 1
diff mono: 42.010567
origin: X
source: natural
has_exact_synonym: OAcRes
has_obo_namespace: PSI-MOD
id: MOD:00644
in_subset: PSI-MOD-slim

Axiom
annotated source: mono O-acetylated residue
annotated property: definition
annotated target: A protein modification that effectively replaces a residue hydroxyl group with an acetoxy group.
database_cross_reference: PubMed:18688235

Axiom
annotated source: mono O-acetylated residue
annotated property: has_exact_synonym
annotated target: OAcRes
has_synonym_type: Short label curated by PSI-MOD

mono S-acetylated residue
type: Class
subclass of: monoacetylated residue
subclass of: MOD_00672
definition: A protein modification that effectively replaces a residue sulfanyl group with an acetylsulfanyl group.
diff avg: 42.04
diff formula: C 2 H 2 O 1 S 0
diff mono: 42.010567
origin: X
source: natural
has_exact_synonym: SAcRes
has_obo_namespace: PSI-MOD
id: MOD:00645
in_subset: PSI-MOD-slim

Axiom
annotated source: mono S-acetylated residue
annotated property: definition
annotated target: A protein modification that effectively replaces a residue sulfanyl group with an acetylsulfanyl group.
database_cross_reference: PubMed:18688235

Axiom
annotated source: mono S-acetylated residue
annotated property: has_exact_synonym
annotated target: SAcRes
has_synonym_type: Short label curated by PSI-MOD

monoacetylated L-cysteine
type: Class
subclass of: monoacetylated residue
subclass of: MOD_00905
definition: A protein modification that effectively converts an L-cysteine residue to either N-acetyl-L-cysteine or S-acetyl-L-cysteine.
diff avg: 42.04
diff formula: C 2 H 2 N 0 O 1 S 0
diff mono: 42.010567
formula: C 5 H 7 N 1 O 2 S 1
mass avg: 145.18
mass mono: 145.01974
origin: C
source: natural
has_exact_synonym: AcCys
has_obo_namespace: PSI-MOD
id: MOD:00646
in_subset: PSI-MOD-slim

Axiom
annotated source: monoacetylated L-cysteine
annotated property: definition
annotated target: A protein modification that effectively converts an L-cysteine residue to either N-acetyl-L-cysteine or S-acetyl-L-cysteine.
database_cross_reference: PubMed:18688235

Axiom
annotated source: monoacetylated L-cysteine
annotated property: has_exact_synonym
annotated target: AcCys
has_synonym_type: Short label curated by PSI-MOD

monoacetylated L-serine
type: Class
subclass of: monoacetylated residue
subclass of: MOD_00916
definition: A protein modification that effectively converts an L-serine residue to either N-acetyl-L-serine, O-acetyl-L-serine, or N,O-diacetyl-L-serine.
diff avg: 42.04
diff formula: C 2 H 2 N 0 O 1
diff mono: 42.010567
origin: S
source: natural
has_exact_synonym: AcSer
has_obo_namespace: PSI-MOD
id: MOD:00647
in_subset: PSI-MOD-slim

Axiom
annotated source: monoacetylated L-serine
annotated property: definition
annotated target: A protein modification that effectively converts an L-serine residue to either N-acetyl-L-serine, O-acetyl-L-serine, or N,O-diacetyl-L-serine.
database_cross_reference: PubMed:18688235

Axiom
annotated source: monoacetylated L-serine
annotated property: has_exact_synonym
annotated target: AcSer
has_synonym_type: Short label curated by PSI-MOD

N,O-diacetylated L-serine
type: Class
subclass of: MOD_02080
subclass of: Restriction
  on property: has functional parent
  some values from: N-acetyl-L-serine
subclass of: Restriction
  on property: has functional parent
  some values from: O-acetyl-L-serine
definition: A protein modification that effectively converts an L-serine residue to N,O-diacetyl-L-serine.
diff avg: 84.07
diff formula: C 4 H 4 N 0 O 2
diff mono: 84.021126
formula: C 7 H 10 N 1 O 4
mass avg: 172.16
mass mono: 172.06099
origin: S
source: artifact
term spec: N-term
has_exact_synonym: (S)-2-acetamido-3-acetyloxypropanoic acid
has_exact_synonym: N,O-diacetyl-L-serine
has_exact_synonym: N,O-diacetylserine
has_exact_synonym: NOAc2Ser
has_obo_namespace: PSI-MOD
id: MOD:00648
comment: In one paper, the samples were prepared using glacial acetic acid, and were probably artifactual [JSG].

Axiom
annotated source: N,O-diacetylated L-serine
annotated property: definition
annotated target: A protein modification that effectively converts an L-serine residue to N,O-diacetyl-L-serine.
database_cross_reference: PubMed:16731519
database_cross_reference: PubMed:489587
database_cross_reference: PubMed:7309355
database_cross_reference: RESID:AA0051#var
database_cross_reference: RESID:AA0364#var

Axiom
annotated source: N,O-diacetylated L-serine
annotated property: has_exact_synonym
annotated target: (S)-2-acetamido-3-acetyloxypropanoic acid
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: N,O-diacetylated L-serine
annotated property: has_exact_synonym
annotated target: N,O-diacetyl-L-serine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: N,O-diacetylated L-serine
annotated property: has_exact_synonym
annotated target: N,O-diacetylserine
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: N,O-diacetylated L-serine
annotated property: has_exact_synonym
annotated target: NOAc2Ser
has_synonym_type: Short label curated by PSI-MOD

acylated residue
type: Class
subclass of: MOD_01156
definition: A protein modification that effectively replaces a hydrogen atom with an acyl group.
has_exact_synonym: AcylRes
has_obo_namespace: PSI-MOD
id: MOD:00649
in_subset: PSI-MOD-slim

Axiom
annotated source: acylated residue
annotated property: definition
annotated target: A protein modification that effectively replaces a hydrogen atom with an acyl group.
database_cross_reference: PubMed:18688235

Axiom
annotated source: acylated residue
annotated property: has_exact_synonym
annotated target: AcylRes
has_synonym_type: Short label curated by PSI-MOD

N-myristoylated residue
type: Class
subclass of: myristoylated residue
subclass of: MOD_00670
definition: A protein modification that effectively replaces a residue amino group with a myristoylamino group.
diff avg: 210.36
diff formula: C 14 H 26 O 1
diff mono: 210.19836
origin: X
source: natural
has_exact_synonym: NMyrRes
has_obo_namespace: PSI-MOD
id: MOD:00650
in_subset: PSI-MOD-slim

Axiom
annotated source: N-myristoylated residue
annotated property: definition
annotated target: A protein modification that effectively replaces a residue amino group with a myristoylamino group.
database_cross_reference: PubMed:18688235

Axiom
annotated source: N-myristoylated residue
annotated property: has_exact_synonym
annotated target: NMyrRes
has_synonym_type: Short label curated by PSI-MOD

N-palmitoylated residue
type: Class
subclass of: palmitoylated residue
subclass of: MOD_00670
definition: A protein modification that effectively replaces a residue amino group with a palmitoylamino group.
diff avg: 238.41
diff formula: C 16 H 30 O 1
diff mono: 238.22966
origin: X
source: natural
has_exact_synonym: N-hexadecanoylated residue
has_exact_synonym: NPamRes
has_obo_namespace: PSI-MOD
id: MOD:00651
in_subset: PSI-MOD-slim

Axiom
annotated source: N-palmitoylated residue
annotated property: definition
annotated target: A protein modification that effectively replaces a residue amino group with a palmitoylamino group.
database_cross_reference: PubMed:18688235

Axiom
annotated source: N-palmitoylated residue
annotated property: has_exact_synonym
annotated target: N-hexadecanoylated residue
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: N-palmitoylated residue
annotated property: has_exact_synonym
annotated target: NPamRes
has_synonym_type: Short label curated by PSI-MOD

O-palmitoylated residue
type: Class
subclass of: palmitoylated residue
subclass of: MOD_00671
definition: A protein modification that effectively replaces a residue hydroxyl group with a palmitoyloxy group.
diff avg: 238.41
diff formula: C 16 H 30 O 1
diff mono: 238.22966
origin: X
source: natural
has_exact_synonym: O-hexadecanoylated residue
has_exact_synonym: OPamRes
has_obo_namespace: PSI-MOD
id: MOD:00652
in_subset: PSI-MOD-slim

Axiom
annotated source: O-palmitoylated residue
annotated property: definition
annotated target: A protein modification that effectively replaces a residue hydroxyl group with a palmitoyloxy group.
database_cross_reference: PubMed:18688235

Axiom
annotated source: O-palmitoylated residue
annotated property: has_exact_synonym
annotated target: O-hexadecanoylated residue
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: O-palmitoylated residue
annotated property: has_exact_synonym
annotated target: OPamRes
has_synonym_type: Short label curated by PSI-MOD

S-palmitoylated residue
type: Class
subclass of: palmitoylated residue
subclass of: MOD_00672
definition: A protein modification that effectively replaces a residue sulfanyl group with an palmitoylsulfanyl group.
diff avg: 238.41
diff formula: C 16 H 30 O 1 S 0
diff mono: 238.22966
origin: X
source: natural
has_exact_synonym: S-hexadecanoylated residue
has_exact_synonym: SPamRes
has_obo_namespace: PSI-MOD
id: MOD:00653
in_subset: PSI-MOD-slim

Axiom
annotated source: S-palmitoylated residue
annotated property: definition
annotated target: A protein modification that effectively replaces a residue sulfanyl group with an palmitoylsulfanyl group.
database_cross_reference: PubMed:18688235

Axiom
annotated source: S-palmitoylated residue
annotated property: has_exact_synonym
annotated target: S-hexadecanoylated residue
has_synonym_type: Alternate name curated by PSI-MOD

Axiom
annotated source: S-palmitoylated residue
annotated property: has_exact_synonym
annotated target: SPamRes
has_synonym_type: Short label curated by PSI-MOD

S-methylated residue
type: Class
subclass of: methylated residue
definition: a protein modification that effectively replaces a sulfanyl group with a methylsulfanyl group
has_exact_synonym: SMeRes
has_obo_namespace: PSI-MOD
id: MOD:00654
in_subset: PSI-MOD-slim

Axiom
annotated source: S-methylated residue
annotated property: definition
annotated target: a protein modification that effectively replaces a sulfanyl group with a methylsulfanyl group
database_cross_reference: PubMed:18688235

Axiom
annotated source: S-methylated residue
annotated property: has_exact_synonym
annotated target: SMeRes
has_synonym_type: Short label curated by PSI-MOD