ICDC: ICD-China
type: Ontology
date: 10-19-2018
subject: ICDC: ICD-China.
description: The ICD-China (ICDC) represents the representation of the Chinese version of the ICD standard (GB/T 14396).
creator: Ling Wan)
Format: OWL-DL
version info: Vision Release: 1.0.01
creator: Yongqun "Oliver" He (YH)

BFO OWL specification label
type: AnnotationProperty
definition: Relates an entity in the ontology to the name of the variable that is used to represent it in the code that generates the BFO OWL file from the lispy specification.
curator note: Really of interest to developers only
sub property of: label

BFO CLIF specification label
type: AnnotationProperty
definition: Relates an entity in the ontology to the term that is used to represent it in the the CLIF specification of BFO2
definition source: Person:Alan Ruttenberg
curator note: Really of interest to developers only
sub property of: label

editor preferred label
type: AnnotationProperty
editor preferred label: editor preferred label
editor preferred label: editor preferred term
editor preferred label: editor preferred term~editor preferred label
has curation status: ready for release
definition: The concise, meaningful, and human-friendly name for a class or property preferred by the ontology developers. (US-English)
term editor: PERSON:Daniel Schober
definition source: GROUP:OBI:<http://purl.obolibrary.org/obo/obi>
label: editor preferred term
label: editor preferred term~editor preferred label

example of usage
type: AnnotationProperty
editor preferred label: example
has curation status: ready for release
definition: A phrase describing how a term should be used and/or a citation to a work which uses it. May also include other kinds of examples that facilitate immediate understanding, such as widely know prototypes or instances of a class, or cases where a relation is said to hold.
term editor: PERSON:Daniel Schober
definition source: GROUP:OBI:<http://purl.obolibrary.org/obo/obi>

has curation status
type: AnnotationProperty
editor preferred label: has curation status
term editor: PERSON:Alan Ruttenberg
term editor: PERSON:Bill Bug
term editor: PERSON:Melanie Courtot
definition source: OBI_0000281

definition
type: AnnotationProperty
editor preferred label: definition
editor preferred label: textual definition
has curation status: ready for release
definition: English language definitions of what NCI means by the concept. These are limited to 1024 characters. They may also include information about the definition's source and attribution in a form that can easily be interpreted by software.
definition: The official OBI definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions.
definition: The official definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions.
editor note: 2012-04-05: Barry Smith The official OBI definition, explaining the meaning of a class or property: 'Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions' is terrible. Can you fix to something like: A statement of necessary and sufficient conditions explaining the meaning of an expression referring to a class or property. Alan Ruttenberg Your proposed definition is a reasonable candidate, except that it is very common that necessary and sufficient conditions are not given. Mostly they are necessary, occasionally they are necessary and sufficient or just sufficient. Often they use terms that are not themselves defined and so they effectively can't be evaluated by those criteria. On the specifics of the proposed definition: We don't have definitions of 'meaning' or 'expression' or 'property'. For 'reference' in the intended sense I think we use the term 'denotation'. For 'expression', I think we you mean symbol, or identifier. For 'meaning' it differs for class and property. For class we want documentation that let's the intended reader determine whether an entity is instance of the class, or not. For property we want documentation that let's the intended reader determine, given a pair of potential relata, whether the assertion that the relation holds is true. The 'intended reader' part suggests that we also specify who, we expect, would be able to understand the definition, and also generalizes over human and computer reader to include textual and logical definition. Personally, I am more comfortable weakening definition to documentation, with instructions as to what is desirable. We also have the outstanding issue of how to aim different definitions to different audiences. A clinical audience reading chebi wants a different sort of definition documentation/definition from a chemistry trained audience, and similarly there is a need for a definition that is adequate for an ontologist to work with.
term editor: PERSON:Daniel Schober
definition source: GROUP:OBI:<http://purl.obolibrary.org/obo/obi>
has exact synonym: DEFINITION
label: textual definition

editor note
type: AnnotationProperty
editor preferred label: editor note
has curation status: ready for release
definition: An administrative note intended for its editor. It may not be included in the publication version of the ontology, so it should contain nothing necessary for end users to understand the ontology.
term editor: PERSON:Daniel Schober
definition source: GROUP:OBI:<http://purl.obfoundry.org/obo/obi>

term editor
type: AnnotationProperty
editor preferred label: term editor
has curation status: ready for release
definition: Name of editor entering the term in the file. The term editor is a point of contact for information regarding the term. The term editor may be, but is not always, the author of the definition, which may have been worked upon by several people
editor note: 20110707, MC: label update to term editor and definition modified accordingly. See https://github.com/information-artifact-ontology/IAO/issues/115.
term editor: PERSON:Daniel Schober
definition source: GROUP:OBI:<http://purl.obolibrary.org/obo/obi>

alternative term
type: AnnotationProperty
editor preferred label: alternative term
has curation status: pending final vetting
definition: An alternative name for a class or property which means the same thing as the preferred name (semantically equivalent)
term editor: PERSON:Daniel Schober
definition source: GROUP:OBI:<http://purl.obolibrary.org/obo/obi>

definition source
type: AnnotationProperty
editor preferred label: definition source
has curation status: ready for release
definition: formal citation, e.g. identifier in external database to indicate / attribute source(s) for the definition. Free text indicate / attribute source(s) for the definition. EXAMPLE: Author Name, URI, MeSH Term C04, PUBMED ID, Wiki uri on 31.01.2007
term editor: PERSON:Daniel Schober
definition source: Discussion on obo-discuss mailing-list, see http://bit.ly/hgm99w
definition source: GROUP:OBI:<http://purl.obolibrary.org/obo/obi>

curator note
type: AnnotationProperty
editor preferred label: curator note
has curation status: ready for release
definition: An administrative note of use for a curator but of no use for a user
term editor: PERSON:Alan Ruttenberg

imported from
type: AnnotationProperty
editor preferred label: imported from
has curation status: pending final vetting
definition: For external terms/classes, the ontology from which the term was imported
term editor: PERSON:Alan Ruttenberg
term editor: PERSON:Melanie Courtot
definition source: GROUP:OBI:<http://purl.obolibrary.org/obo/obi>

OBO foundry unique label
type: AnnotationProperty
editor preferred label: OBO foundry unique label
has curation status: pending final vetting
definition: An alternative name for a class or property which is unique across the OBO Foundry.
editor note: The intended usage of that property is as follow: OBO foundry unique labels are automatically generated based on regular expressions provided by each ontology, so that SO could specify unique label = 'sequence ' + [label], etc. , MA could specify 'mouse + [label]' etc. Upon importing terms, ontology developers can choose to use the 'OBO foundry unique label' for an imported term or not. The same applies to tools .
term editor: PERSON:Alan Ruttenberg
term editor: PERSON:Bjoern Peters
term editor: PERSON:Chris Mungall
term editor: PERSON:Melanie Courtot
definition source: GROUP:OBO Foundry <http://obofoundry.org/>

elucidation
type: AnnotationProperty
editor preferred label: elucidation
term editor: person:Alan Ruttenberg
definition source: Person:Barry Smith
elucidation: Primitive terms in a highest-level ontology such as BFO are terms which are so basic to our understanding of reality that there is no way of defining them in a non-circular fashion. For these, therefore, we can provide only elucidations, supplemented by examples and by axioms

has associated axiom(nl)
type: AnnotationProperty
editor preferred label: has associated axiom(nl)
term editor: Person:Alan Ruttenberg
definition source: Person:Alan Ruttenberg
elucidation: An axiom associated with a term expressed using natural language

has associated axiom(fol)
type: AnnotationProperty
editor preferred label: has associated axiom(fol)
term editor: Person:Alan Ruttenberg
definition source: Person:Alan Ruttenberg
elucidation: An axiom expressed in first order logic using CLIF syntax

Has_CDRH_Parent
type: AnnotationProperty
definition: A property created to allow the source CDRH to assign a parent to each concept with the intent of creating a hierarchy that includes only terms in which they are the contributing source.
code: A10
Semantic_Type: Conceptual Entity
Display_Name: Has CDRH Parent
Preferred_Name: Has_CDRH_Parent
has exact synonym: Has_CDRH_Parent
range: anyURI

Has_NICHD_Parent
type: AnnotationProperty
definition: A property created to allow the source NICHD to assign a parent to each concept with the intent of creating a hierarchy that includes only terms in which they are the contributing source.
code: A11
Semantic_Type: Conceptual Entity
Preferred_Name: Has_NICHD_Parent
has exact synonym: Has_NICHD_Parent
range: anyURI

Has_CTCAE_5_Parent
type: AnnotationProperty
definition: A property created to allow the source CTCAE 5.0 to assign a parent to each concept with the intent of creating a hierarchy that includes only terms in which CTCAE is the contributing source.
code: A15
Semantic_Type: Conceptual Entity
Preferred_Name: Has_CTCAE_5_Parent
has exact synonym: Has_CTCAE_5_Parent
range: anyURI

code
type: AnnotationProperty
read only: true
code: NHC0
Preferred_Name: code
has exact synonym: code
range: string

Semantic_Type
type: AnnotationProperty
definition: The semantic type describes the sort of thing or category to which a concept belongs in the context of the UMLS semantic network.
code: P106
Semantic_Type: Conceptual Entity
Display_Name: Semantic Type
Preferred_Name: Semantic_Type
DesignNote: In general, applying semantic types aids in allowing users (or computer programs) to draw conclusions about concepts by virtue of the categories to which they have been assigned. We use a set of semantic types developed for the UMLS Metathesaurus. There are currently 134 semantic types in the UMLS.
has exact synonym: Semantic_Type
range: NCIT Semantic Type-enum

Display_Name
type: AnnotationProperty
definition: Provides an alternative Preferred Name for use in some NCI systems.
code: P107
Semantic_Type: Conceptual Entity
Display_Name: Display Name
Preferred_Name: Display_Name
has exact synonym: Display Name
has exact synonym: Display_Name
range: string

Preferred_Name
type: AnnotationProperty
definition: The word or phrase that NCI uses by preference to refer to the concept.
code: P108
Semantic_Type: Conceptual Entity
Display_Name: Preferred Name
Preferred_Name: Preferred_Name
has exact synonym: Preferred Name
has exact synonym: Preferred Term
has exact synonym: Preferred_Name
range: string

UMLS_CUI
type: AnnotationProperty
definition: Concept Unique Identifiers, or CUIs, are concept numbers assigned by the National Library of Medicine (NLM). If a concept in any NCI-maintained knowledgebase exists in the NLM Unified Medical Language System (UMLS), NCI includes the NLM CUI among the information we provide about the concept.
code: P207
Semantic_Type: Conceptual Entity
Display_Name: UMLS CUI
Preferred_Name: UMLS_CUI
has exact synonym: UMLS_CUI
range: string

NCI_META_CUI
type: AnnotationProperty
definition: Contains a Concept Unique Identifier for those concepts that appear in NCI Metathesaurus but not in the NLM UMLS.
code: P208
Semantic_Type: Conceptual Entity
Display_Name: NCI Metathesaurus CUI
Preferred_Name: NCI_META_CUI
has exact synonym: NCI_META_CUI
range: string

Concept_Status
type: AnnotationProperty
definition: An NCI Thesaurus property used to indicate the standing of a concept in relation to currently accepted classifications and concepts. In NCI Thesaurus concept status subtype indicates concepts with unusual and problematic characteristics that should be evaluated by people and/or programs before those concept are used.
code: P310
Semantic_Type: Conceptual Entity
Display_Name: Concept Status
Preferred_Name: Concept_Status
has exact synonym: Concept_Status
range: NCIT Concept Status-enum

FDA_Table
type: AnnotationProperty
definition: Used to flag terms that are part of an FDA data standard manual, including Route of Administration, Dosage Form, Package Type and Potency.
code: P317
Semantic_Type: Conceptual Entity
Display_Name: FDA Table
Preferred_Name: FDA_Table
has exact synonym: FDA_Table
range: NCIT FDA Table-enum

Contributing_Source
type: AnnotationProperty
definition: This property is used to indicate when a non-EVS entity has contributed to, and has a stake in, a concept. This is used where such entities, within or outside NCI, have indicated the need to be able to track their own concepts. A single concept can have multiple instances of this property if multiple entities have such a defined stake.
code: P322
Semantic_Type: Conceptual Entity
Display_Name: Contributing Source
Preferred_Name: Contributing_Source
has exact synonym: Contributing_Source
range: NCIT Contributing Source-enum

ALT_DEFINITION
type: AnnotationProperty
definition: English language definitions of what a source other than NCI means by the concept. These are limited to 1024 characters. They include information about the definition's source in a form that can easily be interpreted by software.
code: P325
Semantic_Type: Conceptual Entity
Display_Name: [source] Definition
Preferred_Name: ALT_DEFINITION
has exact synonym: ALT_DEFINITION
range: NCIT textArea

Neoplastic_Status
type: AnnotationProperty
definition: The morphologic, clinical, and genetic profile of a neoplastic growth that defines it as non-cancerous, cancerous, or of uncertain cancerous potential.
code: P363
Semantic_Type: Conceptual Entity
Display_Name: Neoplastic Status
Preferred_Name: Neoplastic_Status
Contributing_Source: FDA
has exact synonym: Neoplastic_Status
range: NCIT Neoplastic Status-enum

Legacy_Concept_Name
type: AnnotationProperty
read only: true
definition: A retired unique concept identifier created and stored as Concept Name by legacy EVS software. Use of these values was long discouraged, but continued as late as 2009 when creation of new values ceased and Concept Name was retired. Legacy values are intended solely to help resolve and update earlier coding.
code: P366
Semantic_Type: Conceptual Entity
Preferred_Name: Legacy Concept Name
has exact synonym: Legacy Concept Name
range: string

NICHD_Hierarchy_Term
type: AnnotationProperty
code: P371
Semantic_Type: Conceptual Entity
Preferred_Name: NICHD_Hierarchy_Term
Contributing_Source: NICHD
has exact synonym: NICHD_Hierarchy_Term
range: string

Publish_Value_Set
type: AnnotationProperty
definition: Indicates whether or not a value set is ready for publication in the browser.
code: P372
Semantic_Type: Conceptual Entity
Preferred_Name: Publish_Value_Set
has exact synonym: Publish_Value_Set
range: NCIT Publish Value Set-enum

DesignNote
type: AnnotationProperty
definition: Design notes are notations made by NCI vocabulary curators. They are intended to provide supplemental, unstructured information to the user or additional insight about the concept.
code: P98
Semantic_Type: Conceptual Entity
Display_Name: DesignNote
Preferred_Name: DesignNote
has exact synonym: DesignNote
range: string

has PATO_ID
type: AnnotationProperty

has_14396_code
type: AnnotationProperty

ISA alternative term
type: AnnotationProperty
editor preferred label: ISA alternative term
has curation status: ready for release
definition: An alternative term used by the ISA tools project (http://isa-tools.org).
editor note: Requested by Alejandra Gonzalez-Beltran https://sourceforge.net/tracker/?func=detail&aid=3603413&group_id=177891&atid=886178
term editor: Person: Alejandra Gonzalez-Beltran
term editor: Person: Philippe Rocca-Serra
definition source: ISA tools project (http://isa-tools.org)
sub property of: alternative term

IEDB alternative term
type: AnnotationProperty
editor preferred label: IEDB alternative term
has curation status: ready for release
definition: An alternative term used by the IEDB.
term editor: PERSON:Randi Vita, Jason Greenbaum, Bjoern Peters
definition source: IEDB
sub property of: alternative term

temporal interpretation
type: AnnotationProperty
definition: An assertion that holds between an OWL Object Property and a temporal interpretation that elucidates how OWL Class Axioms that use this property are to be interpreted in a temporal context.
sub property of: logical macro assertion on an object property

logical macro assertion
type: AnnotationProperty
definition: An assertion that involves at least one OWL object that is intended to be expanded into one or more logical axioms. The logical expansion can yield axioms expressed using any formal logical system, including, but not limited to OWL2-DL.

logical macro assertion on a property
type: AnnotationProperty
definition: A logical macro assertion whose domain is an IRI for a property
sub property of: logical macro assertion

logical macro assertion on an object property
type: AnnotationProperty
definition: Used to annotate object properties to describe a logical meta-property or characteristic of the object property.
sub property of: logical macro assertion on a property

is opposite of
type: AnnotationProperty
database_cross_reference: RO:0002604
has_obo_namespace: quality
id: is_opposite_of
is class level: true
is metadata tag: true
shorthand: is_opposite_of

Contributor
type: AnnotationProperty
description: Examples of a Contributor include a person, an organisation, or a service. Typically, the name of a Contributor should be used to indicate the entity.
comment: An entity responsible for making contributions to the content of the resource.

Creator
type: AnnotationProperty
description: Examples of a Creator include a person, an organisation, or a service. Typically, the name of a Creator should be used to indicate the entity.
comment: An entity primarily responsible for making the content of the resource.

Date
type: AnnotationProperty
description: Typically, Date will be associated with the creation or availability of the resource. Recommended best practice for encoding the date value is defined in a profile of ISO 8601 [W3CDTF] and follows the YYYY-MM-DD format.
comment: A date associated with an event in the life cycle of the resource.

Description
type: AnnotationProperty
description: Description may include but is not limited to: an abstract, table of contents, reference to a graphical representation of content or a free-text account of the content.
comment: An account of the content of the resource.

Format
type: AnnotationProperty
description: Typically, Format may include the media-type or dimensions of the resource. Format may be used to determine the software, hardware or other equipment needed to display or operate the resource. Examples of dimensions include size and duration. Recommended best practice is to select a value from a controlled vocabulary (for example, the list of Internet Media Types [MIME] defining computer media formats).
comment: The physical or digital manifestation of the resource.

Source
type: AnnotationProperty
description: The present resource may be derived from the Source resource in whole or in part. Recommended best practice is to reference the resource by means of a string or number conforming to a formal identification system.
comment: A reference to a resource from which the present resource is derived.

Subject and Keywords
type: AnnotationProperty
description: Typically, a Subject will be expressed as keywords, key phrases or classification codes that describe a topic of the resource. Recommended best practice is to select a value from a controlled vocabulary or formal classification scheme.
comment: The topic of the content of the resource.

license
type: AnnotationProperty
term editor: Mark Miller
date: 2018-05-11T13:47:29Z

has_alternative_id
type: AnnotationProperty

database_cross_reference
type: AnnotationProperty

has exact synonym
type: AnnotationProperty
definition: Fully qualified synonym, contains the string, term type, source, and an optional source code if appropriate. Each subfield is deliniated to facilitate interpretation by software.
has exact synonym: FULL_SYN
has exact synonym: Synonym with Source Data
label: has_exact_synonym

has_narrow_synonym
type: AnnotationProperty

has_obo_format_version
type: AnnotationProperty

has_obo_namespace
type: AnnotationProperty

has_related_synonym
type: AnnotationProperty

in subset
type: AnnotationProperty
definition: Used to associate the concept defining a particular terminology subset with concepts that belong to this subset.
has exact synonym: Concept_In_Subset
label: in_subset

shorthand
type: AnnotationProperty

label
type: AnnotationProperty
editor preferred label: label

part of
type: ObjectProperty
equivalent property:
  inverse of: has part
inverse of: has part
type: TransitiveProperty
editor preferred label: is part of
example of usage: my brain is part of my body (continuant parthood, two material entities)
example of usage: my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)
example of usage: this day is part of this year (occurrent parthood)
definition: a core relation that holds between a part and its whole
editor note: Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other.
editor note: Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime
editor note: Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.) A continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'.
alternative term: part_of
imported from: obi.owl
temporal interpretation: axiom holds for all times

has part
type: ObjectProperty
equivalent property:
  inverse of: part of
type: TransitiveProperty
editor preferred label: has part
example of usage: my body has part my brain (continuant parthood, two material entities)
example of usage: my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)
example of usage: this year has part this day (occurrent parthood)
definition: a core relation that holds between a whole and its part
editor note: Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part.
editor note: Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime
editor note: Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.) A continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'.
alternative term: has_part
imported from: obi.owl
temporal interpretation: axiom holds for all times

realized in
type: ObjectProperty
equivalent property:
  inverse of: realizes
inverse of: realizes
domain: 可感知实体
range: 过程
editor preferred label: realized in
example of usage: this disease is realized in this disease course
example of usage: this fragility is realized in this shattering
example of usage: this investigator role is realized in this investigation
alternative term: is realized by
alternative term: realized_in
imported from: obi.owl
elucidation: [copied from inverse property 'realizes'] to say that b realizes c at t is to assert that there is some material entity d & b is a process which has participant d at t & c is a disposition or role of which d is bearer_of at t& the type instantiated by b is correlated with the type instantiated by c. (axiom label in BFO2 Reference: [059-003])
comment: Paraphrase of elucidation: a relation between a realizable entity and a process, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process

realizes
type: ObjectProperty
equivalent property:
  inverse of: realized in
domain: 过程
range: 可感知实体
editor preferred label: realizes
example of usage: this disease course realizes this disease
example of usage: this investigation realizes this investigator role
example of usage: this shattering realizes this fragility
imported from: obi.owl
elucidation: to say that b realizes c at t is to assert that there is some material entity d & b is a process which has participant d at t & c is a disposition or role of which d is bearer_of at t& the type instantiated by b is correlated with the type instantiated by c. (axiom label in BFO2 Reference: [059-003])
comment: Paraphrase of elucidation: a relation between a process and a realizable entity, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process

is about
type: ObjectProperty
domain: 信息内容实体
example of usage: This document is about information artifacts and their representations
has curation status: pending final vetting
definition: is_about is a (currently) primitive relation that relates an information artifact to an entity.
editor note: 7/6/2009 Alan Ruttenberg. Following discussion with Jonathan Rees, and introduction of "mentions" relation. Weaken the is_about relationship to be primitive. We will try to build it back up by elaborating the various subproperties that are more precisely defined. Some currently missing phenomena that should be considered "about" are predications - "The only person who knows the answer is sitting beside me" , Allegory, Satire, and other literary forms that can be topical without explicitly mentioning the topic.
term editor: person:Alan Ruttenberg
definition source: Smith, Ceusters, Ruttenberg, 2000 years of philosophy
imported from: obi.owl

Disease_Has_Associated_Anatomic_Site
type: ObjectProperty

Disease_Has_Primary_Anatomic_Site
type: ObjectProperty

Disease_Has_Normal_Tissue_Origin
type: ObjectProperty

Disease_Has_Abnormal_Cell
type: ObjectProperty

Disease_Has_Finding
type: ObjectProperty

Disease_Excludes_Primary_Anatomic_Site
type: ObjectProperty

Anatomic_Structure_Has_Location
type: ObjectProperty
type: TransitiveProperty

located in
type: ObjectProperty

has_specified_input
type: ObjectProperty
equivalent property:
  inverse of: is_specified_input_of
sub property of: has participant
inverse of: is_specified_input_of
domain: 计划性过程
editor preferred label: has_specified_input
example of usage: see is_input_of example_of_usage
has curation status: ready for release
definition: A relation between a planned process and a continuant participating in that process that is not created during the process. The presence of the continuant during the process is explicitly specified in the plan specification which the process realizes the concretization of.
editor note: 8/17/09: specified inputs of one process are not necessarily specified inputs of a larger process that it is part of. This is in contrast to how 'has participant' works.
term editor: PERSON: Alan Ruttenberg
term editor: PERSON: Bjoern Peters
term editor: PERSON: Larry Hunter
term editor: PERSON: Melanie Coutot
imported from: obi.owl

is_specified_input_of
type: ObjectProperty
equivalent property:
  inverse of: has_specified_input
sub property of: participates in
range: 计划性过程
editor preferred label: is_specified_input_of
example of usage: some Autologous EBV(Epstein-Barr virus)-transformed B-LCL (B lymphocyte cell line) is_input_for instance of Chromum Release Assay described at https://wiki.cbil.upenn.edu/obiwiki/index.php/Chromium_Release_assay
has curation status: ready for release
definition: A relation between a planned process and a continuant participating in that process that is not created during the process. The presence of the continuant during the process is explicitly specified in the plan specification which the process realizes the concretization of.
term editor: Alan Ruttenberg
term editor: PERSON:Bjoern Peters
imported from: obi.owl

has_specified_output
type: ObjectProperty
equivalent property:
  inverse of: is_specified_output_of
sub property of: has participant
inverse of: is_specified_output_of
domain: 计划性过程
editor preferred label: has_specified_output
has curation status: ready for release
definition: A relation between a planned process and a continuant participating in that process. The presence of the continuant at the end of the process is explicitly specified in the objective specification which the process realizes the concretization of.
term editor: PERSON: Alan Ruttenberg
term editor: PERSON: Bjoern Peters
term editor: PERSON: Larry Hunter
term editor: PERSON: Melanie Courtot
imported from: obi.owl

is_specified_output_of
type: ObjectProperty
equivalent property:
  inverse of: has_specified_output
sub property of: participates in
range: 计划性过程
editor preferred label: is_specified_output_of
has curation status: ready for release
definition: A relation between a planned process and a continuant participating in that process. The presence of the continuant at the end of the process is explicitly specified in the objective specification which the process realizes the concretization of.
term editor: Alan Ruttenberg
term editor: PERSON:Bjoern Peters
imported from: obi.owl

achieves_planned_objective
type: ObjectProperty
inverse of: objective_achieved_by
domain: 计划性过程
range: objective specification
editor preferred label: achieves_planned_objective
example of usage: A cell sorting process achieves the objective specification 'material separation objective'
has curation status: metadata complete
definition: This relation obtains between a planned process and a objective specification when the criteria specified in the objective specification are met at the end of the planned process.
term editor: BP, AR, PPPB branch
definition source: PPPB branch derived
curator note: modified according to email thread from 1/23/09 in accordince with DT and PPPB branch
imported from: obi.owl

objective_achieved_by
type: ObjectProperty
domain: objective specification
range: 计划性过程
editor preferred label: objective_achieved_by
has curation status: ready for release
definition: This relation obtains between a a objective specification and a planned process when the criteria specified in the objective specification are met at the end of the planned process.
term editor: OBI
definition source: OBI
imported from: obi.owl

inheres in
type: ObjectProperty
equivalent property:
  inverse of: bearer of
inverse of: bearer of
editor preferred label: inheres in
example of usage: this fragility inheres in this vase
example of usage: this red color inheres in this apple
definition: a relation between a specifically dependent continuant (the dependent) and an independent continuant (the bearer), in which the dependent specifically depends on the bearer for its existence
editor note: A dependent inheres in its bearer at all times for which the dependent exists.
alternative term: inheres_in
imported from: obi.owl
temporal interpretation: axiom holds for all times

bearer of
type: ObjectProperty
equivalent property:
  inverse of: inheres in
range: 特殊型依赖性常体
editor preferred label: bearer of
example of usage: this apple is bearer of this red color
example of usage: this vase is bearer of this fragility
definition: a relation between an independent continuant (the bearer) and a specifically dependent continuant (the dependent), in which the dependent specifically depends on the bearer for its existence
editor note: A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist.
alternative term: bearer_of
alternative term: is bearer of
imported from: obi.owl
temporal interpretation: axiom holds for all times

participates in
type: ObjectProperty
equivalent property:
  inverse of: has participant
inverse of: has participant
domain: 常体
range: 行体
editor preferred label: participates in
example of usage: this blood clot participates in this blood coagulation
example of usage: this input material (or this output material) participates in this process
example of usage: this investigator participates in this investigation
definition: a relation between a continuant and a process, in which the continuant is somehow involved in the process
alternative term: participates_in
imported from: obi.owl

has participant
type: ObjectProperty
equivalent property:
  inverse of: participates in
domain: 行体
range: 常体
editor preferred label: has participant
example of usage: this blood coagulation has participant this blood clot
example of usage: this investigation has participant this investigator
example of usage: this process has participant this input material (or this output material)
definition: a relation between a process and a continuant, in which the continuant is somehow involved in the process
editor note: Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time.
alternative term: has_participant
imported from: obi.owl
Source: http://www.obofoundry.org/ro/#OBO_REL:has_participant

is concretized as
type: ObjectProperty
equivalent property:
  inverse of: concretizes
inverse of: concretizes
domain: 基本型依赖性常体
range: 特殊型依赖性常体
example of usage: A journal article is an information artifact that inheres in some number of printed journals. For each copy of the printed journal there is some quality that carries the journal article, such as a pattern of ink. The journal article (a generically dependent continuant) is concretized as the quality (a specifically dependent continuant), and both depend on that copy of the printed journal (an independent continuant).
example of usage: An investigator reads a protocol and forms a plan to carry out an assay. The plan is a realizable entity (a specifically dependent continuant) that concretizes the protocol (a generically dependent continuant), and both depend on the investigator (an independent continuant). The plan is then realized by the assay (a process).
definition: A relationship between a generically dependent continuant and a specifically dependent continuant, in which the generically dependent continuant depends on some independent continuant in virtue of the fact that the specifically dependent continuant also depends on that same independent continuant. A generically dependent continuant may be concretized as multiple specifically dependent continuants.
imported from: obi.owl

concretizes
type: ObjectProperty
equivalent property:
  inverse of: is concretized as
domain: 特殊型依赖性常体
range: 基本型依赖性常体
example of usage: A journal article is an information artifact that inheres in some number of printed journals. For each copy of the printed journal there is some quality that carries the journal article, such as a pattern of ink. The quality (a specifically dependent continuant) concretizes the journal article (a generically dependent continuant), and both depend on that copy of the printed journal (an independent continuant).
example of usage: An investigator reads a protocol and forms a plan to carry out an assay. The plan is a realizable entity (a specifically dependent continuant) that concretizes the protocol (a generically dependent continuant), and both depend on the investigator (an independent continuant). The plan is then realized by the assay (a process).
definition: A relationship between a specifically dependent continuant and a generically dependent continuant, in which the generically dependent continuant depends on some independent continuant in virtue of the fact that the specifically dependent continuant also depends on that same independent continuant. Multiple specifically dependent continuants can concretize the same generically dependent continuant.
imported from: obi.owl

role of
type: ObjectProperty
equivalent property:
  inverse of: has role
sub property of: inheres in
inverse of: has role
example of usage: this investigator role is a role of this person
definition: a relation between a role and an independent continuant (the bearer), in which the role specifically depends on the bearer for its existence
editor note: A role inheres in its bearer at all times for which the role exists, however the role need not be realized at all the times that the role exists.
alternative term: is role of
alternative term: role_of
imported from: obi.owl

has role
type: ObjectProperty
equivalent property:
  inverse of: role of
sub property of: bearer of
domain: 独立常体
range: 角色
example of usage: this person has role this investigator role (more colloquially: this person has this role of investigator)
definition: a relation between an independent continuant (the bearer) and a role, in which the role specifically depends on the bearer for its existence
editor note: A bearer can have many roles, and its roles can exist for different periods of time, but none of its roles can exist when the bearer does not exist. A role need not be realized at all the times that the role exists.
alternative term: has_role
imported from: obi.owl

located in
type: ObjectProperty
type: TransitiveProperty
editor preferred label: located in
example of usage: my brain is located in my head
example of usage: this rat is located in this cage
definition: a relation between two independent continuants, the target and the location, in which the target is entirely within the location
editor note: Location as a relation between instances: The primitive instance-level relation c located_in r at t reflects the fact that each continuant is at any given time associated with exactly one spatial region, namely its exact location. Following we can use this relation to define a further instance-level location relation - not between a continuant and the region which it exactly occupies, but rather between one continuant and another. c is located in c1, in this sense, whenever the spatial region occupied by c is part_of the spatial region occupied by c1. Note that this relation comprehends both the relation of exact location between one continuant and another which obtains when r and r1 are identical (for example, when a portion of fluid exactly fills a cavity), as well as those sorts of inexact location relations which obtain, for example, between brain and head or between ovum and uterus
editor note: Most location relations will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime
alternative term: located_in
imported from: OBO Relations Ontology
temporal interpretation: axiom holds for all times
Source: http://www.obofoundry.org/ro/#OBO_REL:located_in

constitutional_part_of
type: ObjectProperty
sub property of: part_of
imported from: fma.owl
has_obo_namespace: fma
id: constitutional_part_of

part_of
type: ObjectProperty
type: TransitiveProperty
imported from: fma.owl
has_obo_namespace: fma
id: part_of

regional_part_of
type: ObjectProperty
sub property of: part_of
imported from: fma.owl
has_obo_namespace: fma
id: regional_part_of

systemic_part_of
type: ObjectProperty
sub property of: part_of
imported from: fma.owl
has_obo_namespace: fma
id: systemic_part_of

has disease quality
type: ObjectProperty
definition: An object property that represents a relation between a disease and a quality where the patient has the diseease that has a speciifc quality.
term editor: Oliver He, Eric Wan

实体
type: Class
BFO OWL specification label: entity
BFO CLIF specification label: Entity
example of usage: Julius Caesar
example of usage: Verdi’s Requiem
example of usage: the Second World War
example of usage: your body mass index
editor note: BFO 2 Reference: In all areas of empirical inquiry we encounter general terms of two sorts. First are general terms which refer to universals or types:animaltuberculosissurgical procedurediseaseSecond, are general terms used to refer to groups of entities which instantiate a given universal but do not correspond to the extension of any subuniversal of that universal because there is nothing intrinsic to the entities in question by virtue of which they – and only they – are counted as belonging to the given group. Examples are: animal purchased by the Emperortuberculosis diagnosed on a Wednesdaysurgical procedure performed on a patient from Stockholmperson identified as candidate for clinical trial #2056-555person who is signatory of Form 656-PPVpainting by Leonardo da VinciSuch terms, which represent what are called ‘specializations’ in [81
editor note: Entity doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example Werner Ceusters 'portions of reality' include 4 sorts, entities (as BFO construes them), universals, configurations, and relations. It is an open question as to whether entities as construed in BFO will at some point also include these other portions of reality. See, for example, 'How to track absolutely everything' at http://www.referent-tracking.com/_RTU/papers/CeustersICbookRevised.pdf
imported from: obi.owl
elucidation: An entity is anything that exists or has existed or will exist. (axiom label in BFO2 Reference: [001-001])

常体
type: Class
subclass of: 实体
BFO OWL specification label: continuant
BFO CLIF specification label: Continuant
definition: An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts.
editor note: BFO 2 Reference: Continuant entities are entities which can be sliced to yield parts only along the spatial dimension, yielding for example the parts of your table which we call its legs, its top, its nails. ‘My desk stretches from the window to the door. It has spatial parts, and can be sliced (in space) in two. With respect to time, however, a thing is a continuant.’ [60, p. 240
editor note: Continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example, in an expansion involving bringing in some of Ceuster's other portions of reality, questions are raised as to whether universals are continuants
imported from: obi.owl
elucidation: A continuant is an entity that persists, endures, or continues to exist through time while maintaining its identity. (axiom label in BFO2 Reference: [008-002])
has associated axiom(nl): if b is a continuant and if, for some t, c has_continuant_part b at t, then c is a continuant. (axiom label in BFO2 Reference: [126-001])
has associated axiom(nl): if b is a continuant and if, for some t, cis continuant_part of b at t, then c is a continuant. (axiom label in BFO2 Reference: [009-002])
has associated axiom(nl): if b is a material entity, then there is some temporal interval (referred to below as a one-dimensional temporal region) during which b exists. (axiom label in BFO2 Reference: [011-002])
has associated axiom(fol): (forall (x y) (if (and (Continuant x) (exists (t) (continuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [009-002]
has associated axiom(fol): (forall (x y) (if (and (Continuant x) (exists (t) (hasContinuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [126-001]
has associated axiom(fol): (forall (x) (if (Continuant x) (Entity x))) // axiom label in BFO2 CLIF: [008-002]
has associated axiom(fol): (forall (x) (if (Material Entity x) (exists (t) (and (TemporalRegion t) (existsAt x t))))) // axiom label in BFO2 CLIF: [011-002]

行体
type: Class
subclass of: 实体
BFO OWL specification label: occurrent
BFO CLIF specification label: Occurrent
definition: An entity that has temporal parts and that happens, unfolds or develops through time.
editor note: BFO 2 Reference: every occurrent that is not a temporal or spatiotemporal region is s-dependent on some independent continuant that is not a spatial region
editor note: BFO 2 Reference: s-dependence obtains between every process and its participants in the sense that, as a matter of necessity, this process could not have existed unless these or those participants existed also. A process may have a succession of participants at different phases of its unfolding. Thus there may be different players on the field at different times during the course of a football game; but the process which is the entire game s-depends_on all of these players nonetheless. Some temporal parts of this process will s-depend_on on only some of the players.
editor note: Occurrent doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. An example would be the sum of a process and the process boundary of another process.
editor note: Simons uses different terminology for relations of occurrents to regions: Denote the spatio-temporal location of a given occurrent e by 'spn[e]' and call this region its span. We may say an occurrent is at its span, in any larger region, and covers any smaller region. Now suppose we have fixed a frame of reference so that we can speak not merely of spatio-temporal but also of spatial regions (places) and temporal regions (times). The spread of an occurrent, (relative to a frame of reference) is the space it exactly occupies, and its spell is likewise the time it exactly occupies. We write 'spr[e]' and `spl[e]' respectively for the spread and spell of e, omitting mention of the frame.
imported from: obi.owl
elucidation: An occurrent is an entity that unfolds itself in time or it is the instantaneous boundary of such an entity (for example a beginning or an ending) or it is a temporal or spatiotemporal region which such an entity occupies_temporal_region or occupies_spatiotemporal_region. (axiom label in BFO2 Reference: [077-002])
has associated axiom(nl): Every occurrent occupies_spatiotemporal_region some spatiotemporal region. (axiom label in BFO2 Reference: [108-001])
has associated axiom(nl): b is an occurrent entity iff b is an entity that has temporal parts. (axiom label in BFO2 Reference: [079-001])
has associated axiom(fol): (forall (x) (if (Occurrent x) (exists (r) (and (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion x r))))) // axiom label in BFO2 CLIF: [108-001]
has associated axiom(fol): (forall (x) (iff (Occurrent x) (and (Entity x) (exists (y) (temporalPartOf y x))))) // axiom label in BFO2 CLIF: [079-001]

独立常体
type: Class
subclass of: 常体
BFO OWL specification label: ic
BFO CLIF specification label: IndependentContinuant
example of usage: a chair
example of usage: a heart
example of usage: a leg
example of usage: a molecule
example of usage: a spatial region
example of usage: an atom
example of usage: an orchestra.
example of usage: an organism
example of usage: the bottom right portion of a human torso
example of usage: the interior of your mouth
definition: A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything.
definition: b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])
imported from: obi.owl
has associated axiom(nl): For any independent continuant b and any time t there is some spatial region r such that b is located_in r at t. (axiom label in BFO2 Reference: [134-001])
has associated axiom(nl): For every independent continuant b and time t during the region of time spanned by its life, there are entities which s-depends_on b during t. (axiom label in BFO2 Reference: [018-002])
has associated axiom(fol): (forall (x t) (if (IndependentContinuant x) (exists (r) (and (SpatialRegion r) (locatedInAt x r t))))) // axiom label in BFO2 CLIF: [134-001]
has associated axiom(fol): (forall (x t) (if (and (IndependentContinuant x) (existsAt x t)) (exists (y) (and (Entity y) (specificallyDependsOnAt y x t))))) // axiom label in BFO2 CLIF: [018-002]
has associated axiom(fol): (iff (IndependentContinuant a) (and (Continuant a) (not (exists (b t) (specificallyDependsOnAt a b t))))) // axiom label in BFO2 CLIF: [017-002]

暂时域
type: Class
subclass of: 行体
BFO OWL specification label: t-region
BFO CLIF specification label: TemporalRegion
editor note: Temporal region doesn't have a closure axiom because the subclasses don't exhaust all possibilites. An example would be the mereological sum of a temporal instant and a temporal interval that doesn't overlap the instant. In this case the resultant temporal region is neither 0-dimensional nor 1-dimensional
imported from: obi.owl
elucidation: A temporal region is an occurrent entity that is part of time as defined relative to some reference frame. (axiom label in BFO2 Reference: [100-001])
has associated axiom(nl): All parts of temporal regions are temporal regions. (axiom label in BFO2 Reference: [101-001])
has associated axiom(nl): Every temporal region t is such that t occupies_temporal_region t. (axiom label in BFO2 Reference: [119-002])
has associated axiom(fol): (forall (r) (if (TemporalRegion r) (occupiesTemporalRegion r r))) // axiom label in BFO2 CLIF: [119-002]
has associated axiom(fol): (forall (x y) (if (and (TemporalRegion x) (occurrentPartOf y x)) (TemporalRegion y))) // axiom label in BFO2 CLIF: [101-001]
has associated axiom(fol): (forall (x) (if (TemporalRegion x) (Occurrent x))) // axiom label in BFO2 CLIF: [100-001]

过程
type: Class
subclass of: 行体
BFO OWL specification label: process
BFO CLIF specification label: Process
example of usage: a process of cell-division, \ a beating of the heart
example of usage: a process of meiosis
example of usage: a process of sleeping
example of usage: the course of a disease
example of usage: the flight of a bird
example of usage: the life of an organism
example of usage: your process of aging.
definition: An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t.
definition: p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])
editor note: BFO 2 Reference: The realm of occurrents is less pervasively marked by the presence of natural units than is the case in the realm of independent continuants. Thus there is here no counterpart of ‘object’. In BFO 1.0 ‘process’ served as such a counterpart. In BFO 2.0 ‘process’ is, rather, the occurrent counterpart of ‘material entity’. Those natural – as contrasted with engineered, which here means: deliberately executed – units which do exist in the realm of occurrents are typically either parasitic on the existence of natural units on the continuant side, or they are fiat in nature. Thus we can count lives; we can count football games; we can count chemical reactions performed in experiments or in chemical manufacturing. We cannot count the processes taking place, for instance, in an episode of insect mating behavior.Even where natural units are identifiable, for example cycles in a cyclical process such as the beating of a heart or an organism’s sleep/wake cycle, the processes in question form a sequence with no discontinuities (temporal gaps) of the sort that we find for instance where billiard balls or zebrafish or planets are separated by clear spatial gaps. Lives of organisms are process units, but they too unfold in a continuous series from other, prior processes such as fertilization, and they unfold in turn in continuous series of post-life processes such as post-mortem decay. Clear examples of boundaries of processes are almost always of the fiat sort (midnight, a time of death as declared in an operating theater or on a death certificate, the initiation of a state of war)
imported from: obi.owl
has associated axiom(fol): (iff (Process a) (and (Occurrent a) (exists (b) (properTemporalPartOf b a)) (exists (c t) (and (MaterialEntity c) (specificallyDependsOnAt a c t))))) // axiom label in BFO2 CLIF: [083-003]

性质
type: Class
subclass of: 可感知实体
BFO OWL specification label: disposition
BFO CLIF specification label: Disposition
example of usage: an atom of element X has the disposition to decay to an atom of element Y
example of usage: certain people have a predisposition to colon cancer
example of usage: children are innately disposed to categorize objects in certain ways.
example of usage: the cell wall is disposed to filter chemicals in endocytosis and exocytosis
editor note: BFO 2 Reference: Dispositions exist along a strength continuum. Weaker forms of disposition are realized in only a fraction of triggering cases. These forms occur in a significant number of cases of a similar type.
imported from: obi.owl
elucidation: b is a disposition means: b is a realizable entity & b’s bearer is some material entity & b is such that if it ceases to exist, then its bearer is physically changed, & b’s realization occurs when and because this bearer is in some special physical circumstances, & this realization occurs in virtue of the bearer’s physical make-up. (axiom label in BFO2 Reference: [062-002])
has associated axiom(nl): If b is a realizable entity then for all t at which b exists, b s-depends_on some material entity at t. (axiom label in BFO2 Reference: [063-002])
has associated axiom(fol): (forall (x t) (if (and (RealizableEntity x) (existsAt x t)) (exists (y) (and (MaterialEntity y) (specificallyDepends x y t))))) // axiom label in BFO2 CLIF: [063-002]
has associated axiom(fol): (forall (x) (if (Disposition x) (and (RealizableEntity x) (exists (y) (and (MaterialEntity y) (bearerOfAt x y t)))))) // axiom label in BFO2 CLIF: [062-002]

可感知实体
type: Class
subclass of: 特殊型依赖性常体
BFO OWL specification label: realizable
BFO CLIF specification label: RealizableEntity
example of usage: the disposition of this piece of metal to conduct electricity.
example of usage: the disposition of your blood to coagulate
example of usage: the function of your reproductive organs
example of usage: the role of being a doctor
example of usage: the role of this boundary to delineate where Utah and Colorado meet
definition: A specifically dependent continuant that inheres in continuant entities and are not exhibited in full at every time in which it inheres in an entity or group of entities. The exhibition or actualization of a realizable entity is a particular manifestation, functioning or process that occurs under certain circumstances.
imported from: obi.owl
elucidation: To say that b is a realizable entity is to say that b is a specifically dependent continuant that inheres in some independent continuant which is not a spatial region and is of a type instances of which are realized in processes of a correlated type. (axiom label in BFO2 Reference: [058-002])
has associated axiom(nl): All realizable dependent continuants have independent continuants that are not spatial regions as their bearers. (axiom label in BFO2 Reference: [060-002])
has associated axiom(fol): (forall (x t) (if (RealizableEntity x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (bearerOfAt y x t))))) // axiom label in BFO2 CLIF: [060-002]
has associated axiom(fol): (forall (x) (if (RealizableEntity x) (and (SpecificallyDependentContinuant x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (inheresIn x y)))))) // axiom label in BFO2 CLIF: [058-002]

特性
type: Class
subclass of: 特殊型依赖性常体
BFO OWL specification label: quality
BFO CLIF specification label: Quality
example of usage: the ambient temperature of this portion of air
example of usage: the color of a tomato
example of usage: the length of the circumference of your waist
example of usage: the mass of this piece of gold.
example of usage: the shape of your nose
example of usage: the shape of your nostril
imported from: obi.owl
elucidation: a quality is a specifically dependent continuant that, in contrast to roles and dispositions, does not require any further process in order to be realized. (axiom label in BFO2 Reference: [055-001])
has associated axiom(nl): If an entity is a quality at any time that it exists, then it is a quality at every time that it exists. (axiom label in BFO2 Reference: [105-001])
has associated axiom(fol): (forall (x) (if (Quality x) (SpecificallyDependentContinuant x))) // axiom label in BFO2 CLIF: [055-001]
has associated axiom(fol): (forall (x) (if (exists (t) (and (existsAt x t) (Quality x))) (forall (t_1) (if (existsAt x t_1) (Quality x))))) // axiom label in BFO2 CLIF: [105-001]

特殊型依赖性常体
type: Class
subclass of: 常体
BFO OWL specification label: sdc
BFO CLIF specification label: SpecificallyDependentContinuant
example of usage: Reciprocal specifically dependent continuants: the function of this key to open this lock and the mutually dependent disposition of this lock: to be opened by this key
example of usage: of one-sided specifically dependent continuants: the mass of this tomato
example of usage: of relational dependent continuants (multiple bearers): John’s love for Mary, the ownership relation between John and this statue, the relation of authority between John and his subordinates.
example of usage: the disposition of this fish to decay
example of usage: the function of this heart: to pump blood
example of usage: the mutual dependence of proton donors and acceptors in chemical reactions [79
example of usage: the mutual dependence of the role predator and the role prey as played by two organisms in a given interaction
example of usage: the pink color of a medium rare piece of grilled filet mignon at its center
example of usage: the role of being a doctor
example of usage: the shape of this hole.
example of usage: the smell of this portion of mozzarella
definition: A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same.
definition: b is a relational specifically dependent continuant = Def. b is a specifically dependent continuant and there are n > 1 independent continuants c1, … cn which are not spatial regions are such that for all 1 i < j n, ci and cj share no common parts, are such that for each 1 i n, b s-depends_on ci at every time t during the course of b’s existence (axiom label in BFO2 Reference: [131-004])
definition: b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003])
editor note: Specifically dependent continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. We're not sure what else will develop here, but for example there are questions such as what are promises, obligation, etc.
imported from: obi.owl
has associated axiom(fol): (iff (RelationalSpecificallyDependentContinuant a) (and (SpecificallyDependentContinuant a) (forall (t) (exists (b c) (and (not (SpatialRegion b)) (not (SpatialRegion c)) (not (= b c)) (not (exists (d) (and (continuantPartOfAt d b t) (continuantPartOfAt d c t)))) (specificallyDependsOnAt a b t) (specificallyDependsOnAt a c t)))))) // axiom label in BFO2 CLIF: [131-004]
has associated axiom(fol): (iff (SpecificallyDependentContinuant a) (and (Continuant a) (forall (t) (if (existsAt a t) (exists (b) (and (IndependentContinuant b) (not (SpatialRegion b)) (specificallyDependsOnAt a b t))))))) // axiom label in BFO2 CLIF: [050-003]

角色
type: Class
subclass of: 可感知实体
BFO OWL specification label: role
BFO CLIF specification label: Role
example of usage: John’s role of husband to Mary is dependent on Mary’s role of wife to John, and both are dependent on the object aggregate comprising John and Mary as member parts joined together through the relational quality of being married.
example of usage: the priest role
example of usage: the role of a boundary to demarcate two neighboring administrative territories
example of usage: the role of a building in serving as a military target
example of usage: the role of a stone in marking a property boundary
example of usage: the role of subject in a clinical trial
example of usage: the student role
definition: A realizable entity the manifestation of which brings about some result or end that is not essential to a continuant in virtue of the kind of thing that it is but that can be served or participated in by that kind of continuant in some kinds of natural, social or institutional contexts.
editor note: BFO 2 Reference: One major family of examples of non-rigid universals involves roles, and ontologies developed for corresponding administrative purposes may consist entirely of representatives of entities of this sort. Thus ‘professor’, defined as follows,b instance_of professor at t =Def. there is some c, c instance_of professor role & c inheres_in b at t.denotes a non-rigid universal and so also do ‘nurse’, ‘student’, ‘colonel’, ‘taxpayer’, and so forth. (These terms are all, in the jargon of philosophy, phase sortals.) By using role terms in definitions, we can create a BFO conformant treatment of such entities drawing on the fact that, while an instance of professor may be simultaneously an instance of trade union member, no instance of the type professor role is also (at any time) an instance of the type trade union member role (any more than any instance of the type color is at any time an instance of the type length).If an ontology of employment positions should be defined in terms of roles following the above pattern, this enables the ontology to do justice to the fact that individuals instantiate the corresponding universals – professor, sergeant, nurse – only during certain phases in their lives.
imported from: obi.owl
elucidation: b is a role means: b is a realizable entity & b exists because there is some single bearer that is in some special physical, social, or institutional set of circumstances in which this bearer does not have to be& b is not such that, if it ceases to exist, then the physical make-up of the bearer is thereby changed. (axiom label in BFO2 Reference: [061-001])
has associated axiom(fol): (forall (x) (if (Role x) (RealizableEntity x))) // axiom label in BFO2 CLIF: [061-001]

基本型依赖性常体
type: Class
subclass of: 常体
BFO OWL specification label: gdc
BFO CLIF specification label: GenericallyDependentContinuant
example of usage: The entries in your database are patterns instantiated as quality instances in your hard drive. The database itself is an aggregate of such patterns. When you create the database you create a particular instance of the generically dependent continuant type database. Each entry in the database is an instance of the generically dependent continuant type IAO: information content entity.
example of usage: the pdf file on your laptop, the pdf file that is a copy thereof on my laptop
example of usage: the sequence of this protein molecule; the sequence that is a copy thereof in that protein molecule.
definition: A continuant that is dependent on one or other independent continuant bearers. For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time.
definition: b is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities. (axiom label in BFO2 Reference: [074-001])
imported from: obi.owl
has associated axiom(fol): (iff (GenericallyDependentContinuant a) (and (Continuant a) (exists (b t) (genericallyDependsOnAt a b t)))) // axiom label in BFO2 CLIF: [074-001]

一维暂时域
type: Class
subclass of: 暂时域
BFO OWL specification label: 1d-t-region
BFO CLIF specification label: OneDimensionalTemporalRegion
example of usage: the temporal region during which a process occurs.
editor note: BFO 2 Reference: A temporal interval is a special kind of one-dimensional temporal region, namely one that is self-connected (is without gaps or breaks).
imported from: obi.owl
elucidation: A one-dimensional temporal region is a temporal region that is extended. (axiom label in BFO2 Reference: [103-001])
has associated axiom(fol): (forall (x) (if (OneDimensionalTemporalRegion x) (TemporalRegion x))) // axiom label in BFO2 CLIF: [103-001]

物质性实体
type: Class
subclass of: 独立常体
BFO OWL specification label: material
BFO CLIF specification label: MaterialEntity
example of usage: a flame
example of usage: a forest fire
example of usage: a human being
example of usage: a hurricane
example of usage: a photon
example of usage: a puff of smoke
example of usage: a sea wave
example of usage: a tornado
example of usage: an aggregate of human beings.
example of usage: an energy wave
example of usage: an epidemic
example of usage: the undetached arm of a human being
definition: An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time.
editor note: BFO 2 Reference: Material entities (continuants) can preserve their identity even while gaining and losing material parts. Continuants are contrasted with occurrents, which unfold themselves in successive temporal parts or phases [60
editor note: BFO 2 Reference: Object, Fiat Object Part and Object Aggregate are not intended to be exhaustive of Material Entity. Users are invited to propose new subcategories of Material Entity.
editor note: BFO 2 Reference: ‘Matter’ is intended to encompass both mass and energy (we will address the ontological treatment of portions of energy in a later version of BFO). A portion of matter is anything that includes elementary particles among its proper or improper parts: quarks and leptons, including electrons, as the smallest particles thus far discovered; baryons (including protons and neutrons) at a higher level of granularity; atoms and molecules at still higher levels, forming the cells, organs, organisms and other material entities studied by biologists, the portions of rock studied by geologists, the fossils studied by paleontologists, and so on.Material entities are three-dimensional entities (entities extended in three spatial dimensions), as contrasted with the processes in which they participate, which are four-dimensional entities (entities extended also along the dimension of time).According to the FMA, material entities may have immaterial entities as parts – including the entities identified below as sites; for example the interior (or ‘lumen’) of your small intestine is a part of your body. BFO 2.0 embodies a decision to follow the FMA here.
imported from: obi.owl
elucidation: A material entity is an independent continuant that has some portion of matter as proper or improper continuant part. (axiom label in BFO2 Reference: [019-002])
has associated axiom(nl): Every entity which has a material entity as continuant part is a material entity. (axiom label in BFO2 Reference: [020-002])
has associated axiom(nl): every entity of which a material entity is continuant part is also a material entity. (axiom label in BFO2 Reference: [021-002])
has associated axiom(fol): (forall (x) (if (MaterialEntity x) (IndependentContinuant x))) // axiom label in BFO2 CLIF: [019-002]
has associated axiom(fol): (forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt x y t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [021-002]
has associated axiom(fol): (forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt y x t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [020-002]

人的身体
type: Class
subclass of: 脊椎动物身体
definition: Anatomical structure which is the aggregate material substance of an individual member of the Homo sapiens species. Examples: There is only one human body.
imported from: fma.owl
has_obo_namespace: fma
id: FMA:20394

Wall of subdivision of external acoustic tube
type: Class
subclass of: 外耳道的其他部分
imported from: fma.owl
has_obo_namespace: fma
id: FMA:224234

Posterior wall of external acoustic tube
type: Class
subclass of: Wall of subdivision of external acoustic tube
subclass of: Restriction
  on property: regional_part_of
  some values from: Wall of external acoustic tube
imported from: fma.owl
has_obo_namespace: fma
id: FMA:224236

Posterior wall of right external acoustic tube
type: Class
subclass of: Posterior wall of external acoustic tube
subclass of: Restriction
  on property: regional_part_of
  some values from: Wall of right external acoustic tube
imported from: fma.owl
has_obo_namespace: fma
id: FMA:224238

Posterior wall of left external acoustic tube
type: Class
subclass of: Posterior wall of external acoustic tube
subclass of: Restriction
  on property: regional_part_of
  some values from: Wall of left external acoustic tube
imported from: fma.owl
has_obo_namespace: fma
id: FMA:224240

Anterior wall of external acoustic tube
type: Class
subclass of: Wall of subdivision of external acoustic tube
subclass of: Restriction
  on property: regional_part_of
  some values from: Wall of external acoustic tube
imported from: fma.owl
has_obo_namespace: fma
id: FMA:224242

Anterior wall of right external acoustic tube
type: Class
subclass of: Anterior wall of external acoustic tube
subclass of: Restriction
  on property: regional_part_of
  some values from: Wall of right external acoustic tube
imported from: fma.owl
has_obo_namespace: fma
id: FMA:224244

Anterior wall of left external acoustic tube
type: Class
subclass of: Anterior wall of external acoustic tube
subclass of: Restriction
  on property: regional_part_of
  some values from: Wall of left external acoustic tube
imported from: fma.owl
has_obo_namespace: fma
id: FMA:224246

Inferior wall of external acoustic tube
type: Class
subclass of: Wall of subdivision of external acoustic tube
subclass of: Restriction
  on property: regional_part_of
  some values from: Wall of external acoustic tube
imported from: fma.owl
has exact synonym: Floor of external acoustic tube
has_obo_namespace: fma
id: FMA:224377

Inferior wall of right external acoustic tube
type: Class
subclass of: Inferior wall of external acoustic tube
subclass of: Restriction
  on property: regional_part_of
  some values from: Wall of right external acoustic tube
imported from: fma.owl
has_obo_namespace: fma
id: FMA:224380

Inferior wall of left external acoustic tube
type: Class
subclass of: Inferior wall of external acoustic tube
subclass of: Restriction
  on property: regional_part_of
  some values from: Wall of left external acoustic tube
imported from: fma.owl
has_obo_namespace: fma
id: FMA:224382

Right supratragic tubercle
type: Class
subclass of: Supratragic tubercle
subclass of: Restriction
  on property: regional_part_of
  some values from: Right pinna
imported from: fma.owl
has_obo_namespace: fma
id: FMA:228619

Left supratragic tubercle
type: Class
subclass of: Supratragic tubercle
subclass of: Restriction
  on property: regional_part_of
  some values from: Left pinna
imported from: fma.owl
has_obo_namespace: fma
id: FMA:228621

头部的其他部分
type: Class
subclass of: 身体次要部分
imported from: fma.owl
has exact synonym: Head region
has exact synonym: Head subdivision
has exact synonym: Region of head
has_obo_namespace: fma
id: FMA:24218

脊椎动物身体
type: Class
subclass of: 身体
imported from: fma.owl
has_obo_namespace: fma
id: FMA:256133

身体
type: Class
subclass of: 解剖学结构
definition: Anatomical structure which is the aggregate material substance of an individual member of a species.
imported from: fma.owl
has_obo_namespace: fma
id: FMA:256135

耳
type: Class
subclass of: 头耳颞部的其他部分
subclass of: Restriction
  on property: regional_part_of
  some values from: 头的耳颞部分
imported from: fma.owl
has_obo_namespace: fma
id: FMA:52780

外耳
type: Class
subclass of: 头耳颞部的其他部分
subclass of: Restriction
  on property: regional_part_of
  some values from: 耳
imported from: fma.owl
has exact synonym: Auricular region
has exact synonym: Auricular region of head
has_obo_namespace: fma
id: FMA:52781

Right ear
type: Class
subclass of: 耳
subclass of: Restriction
  on property: regional_part_of
  some values from: 右脸部
subclass of: Restriction
  on property: regional_part_of
  some values from: 头的右侧耳颞部分
imported from: fma.owl
has_obo_namespace: fma
id: FMA:53641

Left ear
type: Class
subclass of: 耳
subclass of: Restriction
  on property: regional_part_of
  some values from: 左脸部
subclass of: Restriction
  on property: regional_part_of
  some values from: 头的左侧耳颞部分
imported from: fma.owl
has_obo_namespace: fma
id: FMA:53642

Right external ear
type: Class
subclass of: 外耳
subclass of: Restriction
  on property: regional_part_of
  some values from: Right ear
imported from: fma.owl
has exact synonym: Right auricular region
has_obo_namespace: fma
id: FMA:53643

Left external ear
type: Class
subclass of: 外耳
subclass of: Restriction
  on property: regional_part_of
  some values from: Left ear
imported from: fma.owl
has exact synonym: Left auricular region
has_obo_namespace: fma
id: FMA:53644

脸部次要部分
type: Class
subclass of: 头部的其他部分
imported from: fma.owl
has exact synonym: Face subdivision
has exact synonym: Facial region
has exact synonym: Region of face
has_obo_namespace: fma
id: FMA:54393

正常的头部
type: Class
subclass of: 头部的其他部分
subclass of: Restriction
  on property: regional_part_of
  some values from: 头部
definition: Subdivision of head which consists of the neurocranium and all layers superficial to it including the cranial cavity and its contents. Examples: There is only one head proper.
imported from: fma.owl
has_obo_namespace: fma
id: FMA:54545

右脸部
type: Class
subclass of: 脸部次要部分
imported from: fma.owl
has_obo_namespace: fma
id: FMA:54546

左脸部
type: Class
subclass of: 脸部次要部分
imported from: fma.owl
has_obo_namespace: fma
id: FMA:54547

耳廓
type: Class
subclass of: 外耳的其他部分
subclass of: Restriction
  on property: regional_part_of
  some values from: 外耳
imported from: fma.owl
has exact synonym: Auricle
has exact synonym: Auricle of ear
has exact synonym: Auricle of external ear
has exact synonym: Auricula (Auris externa)
has exact synonym: Pinna of ear
has_obo_namespace: fma
id: FMA:56580

Right pinna
type: Class
subclass of: 耳廓
subclass of: Restriction
  on property: regional_part_of
  some values from: Right external ear
imported from: fma.owl
has_obo_namespace: fma
id: FMA:56663

Left pinna
type: Class
subclass of: 耳廓
subclass of: Restriction
  on property: regional_part_of
  some values from: Left external ear
imported from: fma.owl
has_obo_namespace: fma
id: FMA:56664

正常头部的次要部分
type: Class
subclass of: 头部的其他部分
imported from: fma.owl
has exact synonym: Head proper region
has exact synonym: Head proper subdivision
has_obo_namespace: fma
id: FMA:58817

头的右侧耳颞部分
type: Class
subclass of: 头的耳颞部分
subclass of: Restriction
  on property: regional_part_of
  some values from: 正常的头部
imported from: fma.owl
has exact synonym: Right lateral part of head
has exact synonym: Right side of head proper
has_obo_namespace: fma
id: FMA:58825

头的左侧耳颞部分
type: Class
subclass of: 头的耳颞部分
subclass of: Restriction
  on property: regional_part_of
  some values from: 正常的头部
imported from: fma.owl
has exact synonym: Left lateral part of head
has exact synonym: Left side of head proper
has_obo_namespace: fma
id: FMA:58826

耳廓的其他部分
type: Class
subclass of: 外耳的其他部分
imported from: fma.owl
has exact synonym: Pinna subdivision
has_obo_namespace: fma
id: FMA:60960

耳廓小叶
type: Class
subclass of: 耳廓的其他部分
subclass of: Restriction
  on property: regional_part_of
  some values from: 耳廓
imported from: fma.owl
has exact synonym: Auricular lobule
has exact synonym: Ear lobe
has exact synonym: Ear lobule
has exact synonym: Lobe of ear
has exact synonym: Lobule of auricle
has exact synonym: Lobule of auricle of ear
has exact synonym: Pinna lobule
has_obo_namespace: fma
id: FMA:60984

Lobule of right pinna
type: Class
subclass of: 耳廓小叶
subclass of: Restriction
  on property: regional_part_of
  some values from: Right pinna
imported from: fma.owl
has exact synonym: Right ear lobe
has exact synonym: Right pinna lobule
has_obo_namespace: fma
id: FMA:60989

Lobule of left pinna
type: Class
subclass of: 耳廓小叶
subclass of: Restriction
  on property: regional_part_of
  some values from: Left pinna
imported from: fma.owl
has exact synonym: Left ear lobe
has exact synonym: Left pinna lobule
has_obo_namespace: fma
id: FMA:60991

耳轮
type: Class
subclass of: 耳廓的其他部分
subclass of: Restriction
  on property: regional_part_of
  some values from: 耳廓
imported from: fma.owl
has exact synonym: Helical part of pinna
has exact synonym: Helix (Auricula)
has exact synonym: Helix of auricle of ear
has exact synonym: Helix of ear
has exact synonym: Helix of pinna
has_obo_namespace: fma
id: FMA:60992

Right helix
type: Class
subclass of: 耳轮
subclass of: Restriction
  on property: regional_part_of
  some values from: Right pinna
imported from: fma.owl
has exact synonym: Helical part of right pinna
has exact synonym: Helix of auricle of right ear
has exact synonym: Helix of right pinna
has_obo_namespace: fma
id: FMA:60993

Left helix
type: Class
subclass of: 耳轮
subclass of: Restriction
  on property: regional_part_of
  some values from: Left pinna
imported from: fma.owl
has exact synonym: Helical part of left pinna
has exact synonym: Helix of auricle of left ear
has exact synonym: Helix of left pinna
has_obo_namespace: fma
id: FMA:60994

对耳轮
type: Class
subclass of: 耳廓的其他部分
subclass of: Restriction
  on property: regional_part_of
  some values from: 耳廓
imported from: fma.owl
has exact synonym: Antihelical part of pinna
has exact synonym: Antihelix (Auricula)
has exact synonym: Antihelix of pinna
has_obo_namespace: fma
id: FMA:60995

Right antihelix
type: Class
subclass of: 对耳轮
subclass of: Restriction
  on property: regional_part_of
  some values from: Right pinna
imported from: fma.owl
has exact synonym: Antihelical part of right pinna
has exact synonym: Antihelix of right pinna
has_obo_namespace: fma
id: FMA:60996

Left antihelix
type: Class
subclass of: 对耳轮
subclass of: Restriction
  on property: regional_part_of
  some values from: Left pinna
imported from: fma.owl
has exact synonym: Antihelical part of left pinna
has exact synonym: Antihelix of left pinna
has_obo_namespace: fma
id: FMA:60997

耳珠
type: Class
subclass of: 耳廓的其他部分
subclass of: Restriction
  on property: regional_part_of
  some values from: 耳廓
imported from: fma.owl
has exact synonym: Tragal part of pinna
has_obo_namespace: fma
id: FMA:60998

Right tragus
type: Class
subclass of: 耳珠
subclass of: Restriction
  on property: regional_part_of
  some values from: Right pinna
imported from: fma.owl
has exact synonym: Tragal part of right pinna
has_obo_namespace: fma
id: FMA:60999

Left tragus
type: Class
subclass of: 耳珠
subclass of: Restriction
  on property: regional_part_of
  some values from: Left pinna
imported from: fma.owl
has exact synonym: Tragal part of left pinna
has_obo_namespace: fma
id: FMA:61000

对耳屏
type: Class
subclass of: 耳廓的其他部分
subclass of: Restriction
  on property: regional_part_of
  some values from: 耳廓
imported from: fma.owl
has exact synonym: Antitragal part of pinna
has_obo_namespace: fma
id: FMA:61001

Right antitragus
type: Class
subclass of: 对耳屏
subclass of: Restriction
  on property: regional_part_of
  some values from: Right pinna
imported from: fma.owl
has exact synonym: Antitragal part of right pinna
has_obo_namespace: fma
id: FMA:61002

Left antitragus
type: Class
subclass of: 对耳屏
subclass of: Restriction
  on property: regional_part_of
  some values from: Left pinna
imported from: fma.owl
has exact synonym: Antitragal part of left pinna
has_obo_namespace: fma
id: FMA:61003

耳廓壳体
type: Class
subclass of: 耳廓的其他部分
subclass of: Restriction
  on property: regional_part_of
  some values from: 耳廓
imported from: fma.owl
has exact synonym: Concha
has exact synonym: Concha of auricle
has exact synonym: Concha of pinna
has_obo_namespace: fma
id: FMA:61006

Conchal part of right pinna
type: Class
subclass of: 耳廓壳体
subclass of: Restriction
  on property: regional_part_of
  some values from: Right pinna
imported from: fma.owl
has exact synonym: Concha of right pinna
has_obo_namespace: fma
id: FMA:61008

Conchal part of left pinna
type: Class
subclass of: 耳廓壳体
subclass of: Restriction
  on property: regional_part_of
  some values from: Left pinna
imported from: fma.owl
has exact synonym: Concha of left pinna
has_obo_namespace: fma
id: FMA:61009

耳廓壳体的其他部分
type: Class
subclass of: 耳廓的其他部分
imported from: fma.owl
has exact synonym: Subdivision of concha of auricle
has exact synonym: Subdivision of concha of pinna
has_obo_namespace: fma
id: FMA:61081

Cymba conchae of pinna
type: Class
subclass of: 耳廓壳体的其他部分
subclass of: Restriction
  on property: regional_part_of
  some values from: 耳廓壳体
imported from: fma.owl
has exact synonym: Cymba conchae of auricle
has_obo_namespace: fma
id: FMA:61082

Concha proper of pinna
type: Class
subclass of: 耳廓壳体的其他部分
subclass of: Restriction
  on property: regional_part_of
  some values from: 耳廓壳体
imported from: fma.owl
has exact synonym: Concha proper of auricle
has_obo_namespace: fma
id: FMA:61083

Cymba conchae of right pinna
type: Class
subclass of: Cymba conchae of pinna
subclass of: Restriction
  on property: regional_part_of
  some values from: Conchal part of right pinna
imported from: fma.owl
has exact synonym: Right cymba conchae
has_obo_namespace: fma
id: FMA:61084

Cymba conchae of left pinna
type: Class
subclass of: Cymba conchae of pinna
subclass of: Restriction
  on property: regional_part_of
  some values from: Conchal part of left pinna
imported from: fma.owl
has exact synonym: Left cymba conchae
has_obo_namespace: fma
id: FMA:61085

Concha proper of right pinna
type: Class
subclass of: Concha proper of pinna
subclass of: Restriction
  on property: regional_part_of
  some values from: Conchal part of right pinna
imported from: fma.owl
has_obo_namespace: fma
id: FMA:61086

Concha proper of left pinna
type: Class
subclass of: Concha proper of pinna
subclass of: Restriction
  on property: regional_part_of
  some values from: Conchal part of left pinna
imported from: fma.owl
has_obo_namespace: fma
id: FMA:61087

耳廓结节
type: Class
subclass of: 耳廓的其他部分
subclass of: Restriction
  on property: regional_part_of
  some values from: 耳廓
imported from: fma.owl
has exact synonym: Auricular tubercle
has exact synonym: Darwin's tubercle
has exact synonym: Pinna tubercle
has_obo_namespace: fma
id: FMA:61151

Tubercle of right pinna
type: Class
subclass of: 耳廓结节
subclass of: Restriction
  on property: regional_part_of
  some values from: Right pinna
imported from: fma.owl
has exact synonym: Right auricular tubercle
has exact synonym: Right pinna tubercle
has_obo_namespace: fma
id: FMA:61152

Tubercle of left pinna
type: Class
subclass of: 耳廓结节
subclass of: Restriction
  on property: regional_part_of
  some values from: Left pinna
imported from: fma.owl
has exact synonym: Left auricular tubercle
has exact synonym: Left pinna tubercle
has_obo_namespace: fma
id: FMA:61153

外耳道的其他部分
type: Class
subclass of: 外耳的其他部分
imported from: fma.owl
has exact synonym: External acoustic tube subdivision
has_obo_namespace: fma
id: FMA:61288

Isthmus of external acoustic tube
type: Class
subclass of: 外耳道的其他部分
imported from: fma.owl
has exact synonym: External acoustic tube isthmus
has_obo_namespace: fma
id: FMA:61291

Isthmus of right external acoustic meatus
type: Class
subclass of: Isthmus of external acoustic tube
subclass of: Restriction
  on property: systemic_part_of
  some values from: Wall of right external acoustic tube
imported from: fma.owl
has exact synonym: Right external acoustic meatus isthmus
has_obo_namespace: fma
id: FMA:61292

Isthmus of left external acoustic meatus
type: Class
subclass of: Isthmus of external acoustic tube
subclass of: Restriction
  on property: systemic_part_of
  some values from: Wall of left external acoustic tube
imported from: fma.owl
has exact synonym: Left external acoustic meatus isthmus
has_obo_namespace: fma
id: FMA:61293

External part of external acoustic tube
type: Class
subclass of: 外耳道的其他部分
subclass of: Restriction
  on property: regional_part_of
  some values from: 外耳道
imported from: fma.owl
has exact synonym: External part of external acoustic meatus
has exact synonym: External part of external auditory meatus
has exact synonym: External part of external auditory tube
has exact synonym: Pars externa of external acoustic meatus
has_obo_namespace: fma
id: FMA:61305

Middle part of external acoustic tube
type: Class
subclass of: 外耳道的其他部分
subclass of: Restriction
  on property: regional_part_of
  some values from: 外耳道
imported from: fma.owl
has exact synonym: Middle part of external acoustic meatus
has exact synonym: Middle part of external auditory tube
has exact synonym: Pars media of external acoustic meatus
has_obo_namespace: fma
id: FMA:61306

Inner part of external acoustic tube
type: Class
subclass of: 外耳道的其他部分
subclass of: Restriction
  on property: regional_part_of
  some values from: 外耳道
imported from: fma.owl
has exact synonym: Inner part of external acoustic meatus
has exact synonym: Inner part of external auditory tube
has exact synonym: Pars interna of external acoustic meatus
has_obo_namespace: fma
id: FMA:61307

Inner part of right external acoustic tube
type: Class
subclass of: Inner part of external acoustic tube
subclass of: Restriction
  on property: regional_part_of
  some values from: Right external acoustic tube
imported from: fma.owl
has exact synonym: Inner part of right external acoustic meatus
has_obo_namespace: fma
id: FMA:61308

Inner part of left external acoustic tube
type: Class
subclass of: Inner part of external acoustic tube
subclass of: Restriction
  on property: regional_part_of
  some values from: Left external acoustic tube
imported from: fma.owl
has exact synonym: Inner part of left external acoustic meatus
has_obo_namespace: fma
id: FMA:61309

Middle part of right external acoustic tube
type: Class
subclass of: Middle part of external acoustic tube
subclass of: Restriction
  on property: regional_part_of
  some values from: Right external acoustic tube
imported from: fma.owl
has exact synonym: Middle part of right external acoustic meatus
has exact synonym: Middle part of right external auditory meatus
has_obo_namespace: fma
id: FMA:61310

Middle part of left external acoustic tube
type: Class
subclass of: Middle part of external acoustic tube
subclass of: Restriction
  on property: regional_part_of
  some values from: Left external acoustic tube
imported from: fma.owl
has exact synonym: Middle part of left external acoustic meatus
has_obo_namespace: fma
id: FMA:61311

External part of right external acoustic tube
type: Class
subclass of: External part of external acoustic tube
subclass of: Restriction
  on property: regional_part_of
  some values from: Right external acoustic tube
imported from: fma.owl
has exact synonym: External part of right external acoustic meatus
has exact synonym: External part of right external auditory tube
has_obo_namespace: fma
id: FMA:61312

External part of left external acoustic tube
type: Class
subclass of: External part of external acoustic tube
subclass of: Restriction
  on property: regional_part_of
  some values from: Left external acoustic tube
imported from: fma.owl
has exact synonym: External part of left external acoustic meatus
has exact synonym: External part of left external auditory meatus
has_obo_namespace: fma
id: FMA:61313

Wall of external acoustic tube
type: Class
subclass of: 外耳道的其他部分
subclass of: Restriction
  on property: constitutional_part_of
  some values from: 外耳道
imported from: fma.owl
has exact synonym: External acoustic tube wall
has_obo_namespace: fma
id: FMA:61319

Wall of right external acoustic tube
type: Class
subclass of: Wall of external acoustic tube
subclass of: Restriction
  on property: constitutional_part_of
  some values from: Right external acoustic tube
imported from: fma.owl
has exact synonym: Right external acoustic meatus wall
has_obo_namespace: fma
id: FMA:61323

Wall of left external acoustic tube
type: Class
subclass of: Wall of external acoustic tube
subclass of: Restriction
  on property: constitutional_part_of
  some values from: Left external acoustic tube
imported from: fma.owl
has exact synonym: Left external acoustic meatus wall
has_obo_namespace: fma
id: FMA:61324

Wall of external part of external acoustic tube
type: Class
subclass of: Wall of subdivision of external acoustic tube
subclass of: Restriction
  on property: constitutional_part_of
  some values from: External part of external acoustic tube
subclass of: Restriction
  on property: regional_part_of
  some values from: Wall of external acoustic tube
subclass of: Restriction
  on property: systemic_part_of
  some values from: External part of external acoustic tube
imported from: fma.owl
has_obo_namespace: fma
id: FMA:61328

Wall of middle part of external acoustic tube
type: Class
subclass of: Wall of subdivision of external acoustic tube
subclass of: Restriction
  on property: constitutional_part_of
  some values from: Middle part of external acoustic tube
subclass of: Restriction
  on property: regional_part_of
  some values from: Wall of external acoustic tube
imported from: fma.owl
has_obo_namespace: fma
id: FMA:61329

Wall of inner part of external acoustic tube
type: Class
subclass of: Wall of subdivision of external acoustic tube
subclass of: Restriction
  on property: regional_part_of
  some values from: Inner part of external acoustic tube
subclass of: Restriction
  on property: regional_part_of
  some values from: Wall of external acoustic tube
subclass of: Restriction
  on property: systemic_part_of
  some values from: Inner part of external acoustic tube
imported from: fma.owl
has_obo_namespace: fma
id: FMA:61330

Wall of inner part of right external acoustic tube
type: Class
subclass of: Wall of inner part of external acoustic tube
subclass of: Restriction
  on property: constitutional_part_of
  some values from: Inner part of right external acoustic tube
subclass of: Restriction
  on property: regional_part_of
  some values from: Wall of right external acoustic tube
imported from: fma.owl
has_obo_namespace: fma
id: FMA:61331

Wall of inner part of left external acoustic tube
type: Class
subclass of: Wall of inner part of external acoustic tube
subclass of: Restriction
  on property: constitutional_part_of
  some values from: Inner part of left external acoustic tube
subclass of: Restriction
  on property: regional_part_of
  some values from: Wall of left external acoustic tube
imported from: fma.owl
has_obo_namespace: fma
id: FMA:61332

Wall of middle part of right external acoustic tube
type: Class
subclass of: Wall of middle part of external acoustic tube
subclass of: Restriction
  on property: constitutional_part_of
  some values from: Middle part of right external acoustic tube
subclass of: Restriction
  on property: regional_part_of
  some values from: Wall of right external acoustic tube
imported from: fma.owl
has_obo_namespace: fma
id: FMA:61333

Wall of middle part of left external acoustic tube
type: Class
subclass of: Wall of middle part of external acoustic tube
subclass of: Restriction
  on property: constitutional_part_of
  some values from: Middle part of left external acoustic tube
subclass of: Restriction
  on property: regional_part_of
  some values from: Wall of left external acoustic tube
imported from: fma.owl
has_obo_namespace: fma
id: FMA:61334

Wall of external part of right external acoustic tube
type: Class
subclass of: Wall of external part of external acoustic tube
subclass of: Restriction
  on property: constitutional_part_of
  some values from: External part of right external acoustic tube
subclass of: Restriction
  on property: regional_part_of
  some values from: Wall of right external acoustic tube
subclass of: Restriction
  on property: systemic_part_of
  some values from: External part of right external acoustic tube
imported from: fma.owl
has_obo_namespace: fma
id: FMA:61335

Wall of external part of left external acoustic tube
type: Class
subclass of: Wall of external part of external acoustic tube
subclass of: Restriction
  on property: constitutional_part_of
  some values from: External part of left external acoustic tube
subclass of: Restriction
  on property: regional_part_of
  some values from: Wall of left external acoustic tube
subclass of: Restriction
  on property: systemic_part_of
  some values from: External part of left external acoustic tube
imported from: fma.owl
has_obo_namespace: fma
id: FMA:61336

外耳的其他部分
type: Class
subclass of: 头耳颞部的其他部分
imported from: fma.owl
has exact synonym: External ear subdivision
has_obo_namespace: fma
id: FMA:61705

头的耳颞部分
type: Class
subclass of: 正常头部的次要部分
subclass of: Restriction
  on property: regional_part_of
  some values from: 正常的头部
definition: Subdivision of head proper which consists of the temporal bone and all layers superficial to it, including the pinna. Examples: There are only two canonical instances, right and left auriculotemporal parts of head.
imported from: fma.owl
has exact synonym: Lateral part of head
has exact synonym: Side of head proper
has_obo_namespace: fma
id: FMA:61707

头耳颞部的其他部分
type: Class
subclass of: 正常头部的次要部分
imported from: fma.owl
has_obo_namespace: fma
id: FMA:61708

外耳道
type: Class
subclass of: 外耳的其他部分
subclass of: Restriction
  on property: regional_part_of
  some values from: 外耳
imported from: fma.owl
has exact synonym: External acoustic meatus, Auditory canal
has exact synonym: External auditory canal
has exact synonym: External auditory meatus
has exact synonym: External auditory tube
has exact synonym: external canal
has_obo_namespace: fma
id: FMA:61734

Right external acoustic tube
type: Class
subclass of: 外耳道
subclass of: Restriction
  on property: regional_part_of
  some values from: Right external ear
imported from: fma.owl
has exact synonym: Right external acoustic meatus
has exact synonym: Right external auditory canal
has exact synonym: Right external auditory meatus
has_obo_namespace: fma
id: FMA:61735

Left external acoustic tube
type: Class
subclass of: 外耳道
subclass of: Restriction
  on property: regional_part_of
  some values from: Left external ear
imported from: fma.owl
has exact synonym: Left external acoustic meatus
has exact synonym: Left external auditory canal
has exact synonym: Left external auditory meatus
has exact synonym: Left external auditory tube
has_obo_namespace: fma
id: FMA:61736

身体解剖学上的实体
type: Class
subclass of: 解剖学上的实体
definition: Anatomical entity which has three or fewer spatial dimensions. Examples: hemoglobin molecule, mitochondrion, hepatocyte, erythrocyte, heart, head, blood, urine, peritoneal cavity, diaphragmatic surface of heart, inferior margin of liver, apex of lung.
imported from: fma.owl
has_obo_namespace: fma
id: FMA:61775

解剖学上的实体
type: Class
subclass of: 物质性实体
definition: Organismal continuant entity which is enclosed by the bona fide boundary of an organism or is an attribute of its structural organization. Examples: cell, heart, head, peritoneal cavity, apex of lung, anatomical term, sagittal plane.
imported from: fma.owl
has_obo_namespace: fma
id: FMA:62955

解剖学结构
type: Class
subclass of: 物质性解剖学实体
definition: Material anatomical entity which is generated by coordinated expression of the organism's own genes that guide its morphogenesis; has inherent 3D shape; its parts are connected and spatially related to one another in patterns determined by coordinated gene expression. Examples: heart, right ventricle, mitral valve, myocardium, endothelium, lymphocyte, fibroblast, thorax, cardiovascular system, hemoglobin, T cell receptor.
imported from: fma.owl
has exact synonym: Biological structure
has_obo_namespace: fma
id: FMA:67135

物质性解剖学实体
type: Class
subclass of: 身体解剖学上的实体
definition: Physical anatomical entity which has mass. Examples: hemoglobin molecule, mitochondrion, hepatocyte, erythrocyte, heart, head, blood, urine.
imported from: fma.owl
has_obo_namespace: fma
id: FMA:67165

身体次要部分
type: Class
subclass of: 解剖学结构
definition: Anatomical structure, which is a subdivision of a cardinal body part; it may exclude bones; is demarcated from other subdivisions of the same cardinal body part by anatomical surfaces or lines or topographical references; together with other contiguous subdivisions of the same cardinal body part, it constitutes a cardinal body part. Examples: thorax, perineum, back of neck, forearm, hand, phalanx, nose, auricle of ear, scrotum.
imported from: fma.owl
has exact synonym: Principal body part subdivision
has_obo_namespace: fma
id: FMA:67504

男性的身体
type: Class
subclass of: 人的身体
imported from: fma.owl
has_obo_namespace: fma
id: FMA:67811

女性的身体
type: Class
subclass of: 人的身体
imported from: fma.owl
has_obo_namespace: fma
id: FMA:67812

身体主要部分
type: Class
subclass of: 解剖学结构
definition: Anatomical structure, which has as its direct parts instances of anatomical sets of organs and cardinal organ parts spatially associated with either the skull, vertebral column, or the skeleton of a limb; in their aggregate are surrounded by a part of the skin Examples: Head, body proper, right upper limb.
imported from: fma.owl
has exact synonym: Body region
has_obo_namespace: fma
id: FMA:7153

头部
type: Class
subclass of: 身体主要部分
subclass of: Restriction
  on property: regional_part_of
  some values from: 人的身体
subclass of: Restriction
  on property: regional_part_of
  some values from: 男性的身体
subclass of: Restriction
  on property: regional_part_of
  some values from: 女性的身体
definition: Cardinal body part, which consists of a maximal set of diverse subclasses of organ and organ part spatially associated with the skull, it is partially surrounded by skin of head. Examples: There is only one head.
imported from: fma.owl
has exact synonym: Head (volume)
has_obo_namespace: fma
id: FMA:7154

Supratragic tubercle
type: Class
subclass of: 耳廓结节
subclass of: Restriction
  on property: regional_part_of
  some values from: 耳廓
imported from: fma.owl
has_obo_namespace: fma
id: FMA:77676

objective specification
type: Class
subclass of: 指令性信息实体
editor preferred label: objective specification
example of usage: In the protocol of a ChIP assay the objective specification says to identify protein and DNA interaction.
has curation status: ready for release
definition: a directive information entity that describes an intended process endpoint. When part of a plan specification the concretization is realized in a planned process in which the bearer tries to effect the world so that the process endpoint is achieved.
editor note: 2009-03-16: original definition when imported from OBI read: "objective is an non realizable information entity which can serve as that proper part of a plan towards which the realization of the plan is directed."
editor note: 2014-03-31: In the example of usage ("In the protocol of a ChIP assay the objective specification says to identify protein and DNA interaction") there is a protocol which is the ChIP assay protocol. In addition to being concretized on paper, the protocol can be concretized as a realizable entity, such as a plan that inheres in a person. The objective specification is the part that says that some protein and DNA interactions are identified. This is a specification of a process endpoint: the boundary in the process before which they are not identified and after which they are. During the realization of the plan, the goal is to get to the point of having the interactions, and participants in the realization of the plan try to do that.
editor note: Answers the question, why did you do this experiment?
term editor: PERSON: Alan Ruttenberg
term editor: PERSON: Barry Smith
term editor: PERSON: Bjoern Peters
term editor: PERSON: Jennifer Fostel
alternative term: goal specification
definition source: OBI Plan and Planned Process/Roles Branch
definition source: OBI_0000217
imported from: obi.owl

action specification
type: Class
subclass of: 指令性信息实体
example of usage: Pour the contents of flask 1 into flask 2
has curation status: ready for release
definition: a directive information entity that describes an action the bearer will take
term editor: Alan Ruttenberg
definition source: OBI Plan and Planned Process branch
imported from: obi.owl

数据项
type: Class
subclass of: 信息内容实体
editor preferred label: data item
example of usage: Data items include counts of things, analyte concentrations, and statistical summaries.
has curation status: pending final vetting
definition: a data item is an information content entity that is intended to be a truthful statement about something (modulo, e.g., measurement precision or other systematic errors) and is constructed/acquired by a method which reliably tends to produce (approximately) truthful statements.
editor note: 2/2/2009 Alan and Bjoern discussing FACS run output data. This is a data item because it is about the cell population. Each element records an event and is typically further composed a set of measurment data items that record the fluorescent intensity stimulated by one of the lasers.
editor note: 2009-03-16: data item deliberatly ambiguous: we merged data set and datum to be one entity, not knowing how to define singular versus plural. So data item is more general than datum.
editor note: 2009-03-16: removed datum as alternative term as datum specifically refers to singular form, and is thus not an exact synonym.
editor note: 2014-03-31: See discussion at http://odontomachus.wordpress.com/2014/03/30/aboutness-objects-propositions/
editor note: JAR: datum -- well, this will be very tricky to define, but maybe some information-like stuff that might be put into a computer and that is meant, by someone, to denote and/or to be interpreted by some process... I would include lists, tables, sentences... I think I might defer to Barry, or to Brian Cantwell Smith JAR: A data item is an approximately justified approximately true approximate belief
term editor: PERSON: Alan Ruttenberg
term editor: PERSON: Chris Stoeckert
term editor: PERSON: Jonathan Rees
alternative term: data
imported from: obi.owl

信息内容实体
type: Class
subclass of: 基本型依赖性常体
subclass of: Restriction
  on property: is about
  some values from: 实体
editor preferred label: information content entity
example of usage: Examples of information content entites include journal articles, data, graphical layouts, and graphs.
has curation status: ready for release
definition: A generically dependent continuant that is about some thing.
editor note: 2014-03-10: The use of "thing" is intended to be general enough to include universals and configurations (see https://groups.google.com/d/msg/information-ontology/GBxvYZCk1oc/-L6B5fSBBTQJ).
editor note: information_content_entity 'is_encoded_in' some digital_entity in obi before split (040907). information_content_entity 'is_encoded_in' some physical_document in obi before split (040907). Previous. An information content entity is a non-realizable information entity that 'is encoded in' some digital or physical entity.
term editor: PERSON: Chris Stoeckert
definition source: OBI_0000142
imported from: obi.owl

指令性信息实体
type: Class
subclass of: 信息内容实体
subclass of: Restriction
  on property: is about
  some values from: 可感知实体
has curation status: ready for release
definition: An information content entity whose concretizations indicate to their bearer how to realize them in a process.
editor note: 2009-03-16: provenance: a term realizable information entity was proposed for OBI (OBI_0000337) , edited by the PlanAndPlannedProcess branch. Original definition was "is the specification of a process that can be concretized and realized by an actor" with alternative term "instruction".It has been subsequently moved to IAO where the objective for which the original term was defined was satisfied with the definitionof this, different, term.
editor note: 2013-05-30 Alan Ruttenberg: What differentiates a directive information entity from an information concretization is that it can have concretizations that are either qualities or realizable entities. The concretizations that are realizable entities are created when an individual chooses to take up the direction, i.e. has the intention to (try to) realize it.
editor note: 8/6/2009 Alan Ruttenberg: Changed label from "information entity about a realizable" after discussions at ICBO
editor note: Werner pushed back on calling it realizable information entity as it isn't realizable. However this name isn't right either. An example would be a recipe. The realizable entity would be a plan, but the information entity isn't about the plan, it, once concretized, *is* the plan. -Alan
term editor: PERSON: Alan Ruttenberg
term editor: PERSON: Bjoern Peters
imported from: obi.owl

curation status specification
type: Class
equivalent class: Class
  one of: example to be eventually removed
  one of: metadata complete
  one of: organizational term
  one of: ready for release
  one of: metadata incomplete
  one of: uncurated
  one of: pending final vetting
  one of: to be replaced with external ontology term
  one of: requires discussion
subclass of: 本体类数据
editor preferred label: curation status specification
has curation status: pending final vetting
definition: The curation status of the term. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value.
editor note: Better to represent curation as a process with parts and then relate labels to that process (in IAO meeting)
term editor: PERSON:Bill Bug
definition source: GROUP:OBI:<http://purl.obolibrary.org/obo/obi>
definition source: OBI_0000266
imported from: obi.owl

本体类数据
type: Class
subclass of: 数据项
definition: data about an ontology part is a data item about a part of an ontology, for example a term
term editor: Person:Alan Ruttenberg
imported from: obi.owl

plan specification
type: Class
subclass of: 指令性信息实体
subclass of: Restriction
  on property: has part
  some values from: objective specification
subclass of: Restriction
  on property: has part
  some values from: action specification
editor preferred label: plan specification
example of usage: PMID: 18323827.Nat Med. 2008 Mar;14(3):226.New plan proposed to help resolve conflicting medical advice.
has curation status: ready for release
definition: A directive information entity with action specifications and objective specifications as parts that, when concretized, is realized in a process in which the bearer tries to achieve the objectives by taking the actions specified.
editor note: 2009-03-16: provenance: a term a plan was proposed for OBI (OBI_0000344) , edited by the PlanAndPlannedProcess branch. Original definition was " a plan is a specification of a process that is realized by an actor to achieve the objective specified as part of the plan". It has been subsequently moved to IAO where the objective for which the original term was defined was satisfied with the definitionof this, different, term.
editor note: 2014-03-31: A plan specification can have other parts, such as conditional specifications.
editor note: Alternative previous definition: a plan is a set of instructions that specify how an objective should be achieved
term editor: Alan Ruttenberg
definition source: OBI Plan and Planned Process branch
definition source: OBI_0000344
imported from: obi.owl
comment: 2/3/2009 Comment from OBI review. Action specification not well enough specified. Conditional specification not well enough specified. Question whether all plan specifications have objective specifications. Request that IAO either clarify these or change definitions not to use them

Sign or Symptom
type: Class
subclass of: Finding
definition: Objective evidence of disease perceptible to the examining practitioner (sign) and subjective evidence of disease perceived by the patient (symptom).
imported from: ncit.owl
Has_NICHD_Parent: Finding
code: C100104
Semantic_Type: Finding
Preferred_Name: Sign or Symptom
UMLS_CUI: C0037088
Contributing_Source: CDISC
Contributing_Source: NICHD
ALT_DEFINITION: Objective evidence of disease perceptible to the examiner (sign) and subjective evidence of disease perceived by the subject (symptom).
NICHD_Hierarchy_Term: Sign or Symptom
has exact synonym: CLINICAL FINDING
has exact synonym: CLINICAL SIGNS
has exact synonym: Clinical Finding
has exact synonym: Clinical Signs
has exact synonym: DESC
has exact synonym: Sign or Symptom
has exact synonym: Signs or Symptoms
in subset: NCIT C102579
in subset: NCIT C61410
in subset: NCIT C66830
in subset: NCIT C77526
in subset: NCIT C82590
in subset: NCIT C89506
in subset: NCIT C89963
in subset: NCIT C90259

Musculoskeletal System Disorder
type: Class
subclass of: Connective and Soft Tissue Disorder
subclass of: Restriction
  on property: Disease_Has_Associated_Anatomic_Site
  some values from: Connective and Soft Tissue
definition: A category of diseases that involve muscles and bones.
imported from: ncit.owl
Has_NICHD_Parent: Disease or Disorder
code: C107377
Semantic_Type: Disease or Syndrome
Preferred_Name: Musculoskeletal System Disorder
UMLS_CUI: C0026857
Contributing_Source: NICHD
NICHD_Hierarchy_Term: Musculoskeletal System Disorder
has exact synonym: Disorder of Musculoskeletal System
has exact synonym: Musculoskeletal System Disorder
in subset: NCIT C90259
in subset: NCIT C99147

Anatomic Structure, System, or Substance
type: Class
subclass of: 病理
definition: A human biological structure, fluid or other substance; excludes single molecular entities.
imported from: ncit.owl
Has_NICHD_Parent: Pediatric Terminology
code: C12219
Semantic_Type: Classification
Display_Name: Anatomical Concepts
Preferred_Name: Anatomic Structure, System, or Substance
UMLS_CUI: C1515976
Contributing_Source: NICHD
Legacy_Concept_Name: Anatomic_Structure_System_or_Substance
NICHD_Hierarchy_Term: Anatomic Structure, System, or Substance
has exact synonym: Anatomic Structure, System, or Substance
has exact synonym: Anatomic Structures and Systems
has exact synonym: test
in subset: NCIT C90259

Bone
type: Class
subclass of: 病理

Head and Neck
type: Class
subclass of: 病理

闭锁
type: Class
subclass of: Congenital Abnormality
definition: A congenital anatomic defect characterised by the absence of a normally present opening in an organ or tissue.
imported from: ncit.owl
code: C124497
Semantic_Type: Disease or Syndrome
Preferred_Name: Atresia
UMLS_CUI: C0243066
Contributing_Source: CDISC
ALT_DEFINITION: Absence or closure of a normal body orifice or tubular organ. (Makris S, Solomon HM, Clark R, Shiota K, Barbellion S, Buschmann J, Ema M, Fujiwara M, Grote K, Hazelden KP, Hew KW, Horimoto M, Ooshima Y, Parkinson M, Wise LD. Terminology of developmental abnormalities in common laboratory mammals (Version 2). Part B. Birth Defects Res B Dev Reprod Toxicol. 2009 Aug;86(4):227-327.)
has exact synonym: ATRESIA
has exact synonym: Atresia
has exact synonym: Atretic
in subset: NCIT C124310
in subset: NCIT C61410
in subset: NCIT C77526

Skin
type: Class
subclass of: 病理

Soft Tissue
type: Class
subclass of: 病理

Infection
type: Class
subclass of: 病理

Integumentary System
type: Class
subclass of: 病理

Neoplastic Cell
type: Class
subclass of: 病理

Exocrine System
type: Class
subclass of: 病理

Connective and Soft Tissue
type: Class
subclass of: 病理

Body Fluid or Substance
type: Class
subclass of: Anatomic Structure, System, or Substance
definition: Material produced by living organisms; it can be a necessary constituent of, or product of an organismal process.
imported from: ncit.owl
Has_NICHD_Parent: Substance
code: C13236
Semantic_Type: Body Substance
Preferred_Name: Body Fluid or Substance
NCI_META_CUI: CL427986
Contributing_Source: CDISC
Contributing_Source: NICHD
ALT_DEFINITION: Liquid substances produced by the body.
Legacy_Concept_Name: Body_Fluid_or_Substance
NICHD_Hierarchy_Term: Body Fluid or Substance
has exact synonym: Body Fluid or Substance
has exact synonym: Body Fluids and Substances
has exact synonym: Body Fluids or Substances
has exact synonym: FLUID
in subset: NCIT C61410
in subset: NCIT C66830
in subset: NCIT C77529
in subset: NCIT C78734
in subset: NCIT C89506
in subset: NCIT C90259

CTCAE by Body System
type: Class
subclass of: Adverse Event
imported from: ncit.owl
code: C143163
Semantic_Type: Finding
Preferred_Name: CTCAE by Body System
has exact synonym: CTCAE by Body System
has exact synonym: Common Terminology Criteria for Adverse Events by Body System

Infections and Infestations, CTCAE
type: Class
subclass of: CTCAE by Body System
imported from: ncit.owl
Has_CTCAE_5_Parent: CTCAE by Body System
code: C143171
Semantic_Type: Finding
Preferred_Name: Infections and Infestations, CTCAE
has exact synonym: Infections and Infestations, CTCAE

Otitis Externa, CTCAE
type: Class
subclass of: Infections and Infestations, CTCAE
definition: A disorder characterized by an infectious process involving the outer ear and ear canal. Contributory factors include excessive water exposure (swimmer's ear infection) and cuts in the ear canal. Symptoms include fullness, itching, swelling and marked discomfort in the ear and ear drainage.
imported from: ncit.owl
Has_CTCAE_5_Parent: Infections and Infestations, CTCAE
code: C143719
Semantic_Type: Finding
Preferred_Name: Otitis Externa, CTCAE
Contributing_Source: CTCAE
ALT_DEFINITION: A disorder characterized by an infectious process involving the outer ear and ear canal. Contributory factors include excessive water exposure (swimmer's ear infection) and cuts in the ear canal. Symptoms include fullness, itching, swelling and marked discomfort in the ear and ear drainage.
has exact synonym: Otitis Externa, CTCAE
has exact synonym: Otitis externa

Otitis Media, CTCAE
type: Class
subclass of: Infections and Infestations, CTCAE
definition: A disorder characterized by an infectious process involving the middle ear.
imported from: ncit.owl
Has_CTCAE_5_Parent: Infections and Infestations, CTCAE
code: C143720
Semantic_Type: Finding
Preferred_Name: Otitis Media, CTCAE
Contributing_Source: CTCAE
ALT_DEFINITION: A disorder characterized by an infectious process involving the middle ear.
has exact synonym: Otitis Media, CTCAE
has exact synonym: Otitis media

Necrotic Process
type: Class
subclass of: Pathologic Process
definition: A cell death process that is morphologically characterized by a gain in cell volume (oncosis), swelling of organelles, plasma membrane rupture and subsequent loss of intracellular contents.
imported from: ncit.owl
Has_CDRH_Parent: FDA Patient Problem Code Hierarchy
code: C16897
Semantic_Type: Pathologic Function
Preferred_Name: Necrotic Process
UMLS_CUI: C0027540
FDA_Table: Patient Code (Appendix B)
Contributing_Source: CDISC
Contributing_Source: CTRP
Contributing_Source: FDA
ALT_DEFINITION: Death of a group of cells in an organ or tissue. (INHAND)
ALT_DEFINITION: Refers to the death of tissues.
Legacy_Concept_Name: Necrosis
has exact synonym: NECROSIS
has exact synonym: Necrosis
has exact synonym: Necrotic Process
has exact synonym: necrosis
in subset: NCIT C116977
in subset: NCIT C120531
in subset: NCIT C142799
in subset: NCIT C54450
in subset: NCIT C61410
in subset: NCIT C62596
in subset: NCIT C77526

Pathologic Process
type: Class
subclass of: Biological Process
definition: A biologic function or a process having an abnormal or deleterious effect at the subcellular, cellular, multicellular, or organismal level.
imported from: ncit.owl
code: C16956
Semantic_Type: Phenomenon or Process
Preferred_Name: Pathologic Process
UMLS_CUI: C0030660
Legacy_Concept_Name: Pathologic_Process
has exact synonym: Pathologic Process

Biological Process
type: Class
subclass of: 病理
definition: An activity occurring within an organism, between organisms or among organisms and the mechanisms underlying such events.
imported from: ncit.owl
code: C17828
Semantic_Type: Biologic Function
Preferred_Name: Biological Process
UMLS_CUI: C0031845
Legacy_Concept_Name: Biological_Process
has exact synonym: Biological Function
has exact synonym: Biological Process

Non-Neoplastic Connective and Soft Tissue Disorder
type: Class
subclass of: Connective and Soft Tissue Disorder
subclass of: Non-Neoplastic Disorder by Site
subclass of: Restriction
  on property: Disease_Has_Normal_Tissue_Origin
  some values from: Connective and Soft Tissue
definition: A non-neoplastic disorder that affects the connective and soft tissue.
imported from: ncit.owl
code: C26326
Semantic_Type: Disease or Syndrome
Preferred_Name: Non-Neoplastic Connective and Soft Tissue Disorder
UMLS_CUI: C1335003
Legacy_Concept_Name: Non-Neoplastic_Connective_and_Soft_Tissue_Disorder
has exact synonym: Non-Neoplastic Connective and Soft Tissue Disease
has exact synonym: Non-Neoplastic Connective and Soft Tissue Diseases
has exact synonym: Non-Neoplastic Connective and Soft Tissue Disorder
has exact synonym: Non-Neoplastic Connective and Soft Tissue Disorders

蜂窝组织炎
type: Class
subclass of: 细菌感染
subclass of: 软组织感染
definition: Inflammation of the dermis and subcutaneous tissues caused by a bacterial infection. Symptoms include erythema, edema, and pain to the affected area.
imported from: ncit.owl
Has_CDRH_Parent: 细菌感染
Has_NICHD_Parent: 细菌感染
code: C26715
Semantic_Type: Disease or Syndrome
Preferred_Name: Cellulitis
UMLS_CUI: C0007642
FDA_Table: Patient Code (Appendix B)
Contributing_Source: FDA
Contributing_Source: MedDRA
Contributing_Source: NICHD
ALT_DEFINITION: An acute, spreading infection of the deep tissues of the skin and muscle that causes the skin to become warm and tender and may also cause fever, chills, swollen lymph nodes, and blisters.
ALT_DEFINITION: An infection of the skin and subcutaneous tissues with induration and erythema.
Legacy_Concept_Name: Cellulitis
NICHD_Hierarchy_Term: Cellulitis
has exact synonym: Cellulitis
has exact synonym: cellulitis
in subset: NCIT C118464
in subset: NCIT C128453
in subset: NCIT C54450
in subset: NCIT C62596
in subset: NCIT C90259
in subset: NCIT C99147

Infectious Disorder
type: Class
subclass of: Inflammatory Disorder
definition: A disorder resulting from the presence and activity of a microbial, viral, fungal, or parasitic agent. It can be transmitted by direct or indirect contact.
imported from: ncit.owl
Has_CDRH_Parent: FDA Patient Problem Code Hierarchy
Has_NICHD_Parent: Disease or Disorder
code: C26726
Semantic_Type: Disease or Syndrome
Display_Name: Infectious Disorder
Preferred_Name: Infectious Disorder
UMLS_CUI: C0009450
FDA_Table: Patient Code (Appendix B)
Contributing_Source: CDISC
Contributing_Source: CTRP
Contributing_Source: FDA
Contributing_Source: MedDRA
Contributing_Source: NICHD
ALT_DEFINITION: A disorder resulting from the presence and activity of a microbial, viral, fungal, or parasitic agent. It can be transmitted by direct or indirect contact.
ALT_DEFINITION: A disorder resulting from the presence and activity of a microbial, viral, or parasitic agent. It can be transmitted by direct or indirect contact. (NCI)
ALT_DEFINITION: Invasion and multiplication of germs in the body. Infections can occur in any part of the body and can spread throughout the body. The germs may be bacteria, viruses, yeast, or fungi. They can cause a fever and other problems, depending on where the infection occurs. When the body's natural defense system is strong, it can often fight the germs and prevent infection. Some cancer treatments can weaken the natural defense system.
Legacy_Concept_Name: Infectious_Disorder
NICHD_Hierarchy_Term: Infectious Disorder
has exact synonym: Clinical Infection
has exact synonym: ID
has exact synonym: INFECTION
has exact synonym: Infection
has exact synonym: Infectious
has exact synonym: Infectious Disease
has exact synonym: Infectious Diseases and Manifestations
has exact synonym: Infectious Disorder
has exact synonym: infection
in subset: NCIT C101859
in subset: NCIT C116977
in subset: NCIT C118168
in subset: NCIT C118464
in subset: NCIT C128453
in subset: NCIT C54450
in subset: NCIT C61410
in subset: NCIT C62596
in subset: NCIT C66830
in subset: NCIT C90259
in subset: NCIT C96388
in subset: NCIT C99147

Connective Tissue Disorder
type: Class
subclass of: Connective and Soft Tissue Disorder
subclass of: Restriction
  on property: Disease_Has_Associated_Anatomic_Site
  some values from: Bone
definition: A non-neoplastic or neoplastic disorder that affects the connective tissue.
imported from: ncit.owl
Has_CDRH_Parent: FDA Patient Problem Code Hierarchy
Has_NICHD_Parent: Disease or Disorder
code: C26729
Semantic_Type: Disease or Syndrome
Preferred_Name: Connective Tissue Disorder
UMLS_CUI: C0009782
FDA_Table: Patient Code (Appendix B)
Contributing_Source: FDA
Contributing_Source: NICHD
ALT_DEFINITION: A disorder characterized by abnormalities in one or more of the elements of the connective tissues, typically associated with genetic defects.
Legacy_Concept_Name: Connective_Tissue_Disorder
NICHD_Hierarchy_Term: Connective Tissue Disorder
has exact synonym: Connective Tissue Disease
has exact synonym: Connective Tissue Diseases
has exact synonym: Connective Tissue Disorder
has exact synonym: Connective Tissue Disorders
has exact synonym: Disease, Connective Tissue
has exact synonym: Disorder of Connective Tissue
has exact synonym: Primary Disorder of Connective Tissue
has exact synonym: Tissue Disease, Connective
in subset: NCIT C118468
in subset: NCIT C54450
in subset: NCIT C62596
in subset: NCIT C90259
in subset: NCIT C99147

Soft Tissue Disorder
type: Class
subclass of: Connective and Soft Tissue Disorder
subclass of: Restriction
  on property: Disease_Has_Normal_Tissue_Origin
  some values from: Soft Tissue
subclass of: Restriction
  on property: Disease_Excludes_Primary_Anatomic_Site
  some values from: Bone
definition: A non-neoplastic or neoplastic disorder that affects the soft tissue.
imported from: ncit.owl
code: C27042
Semantic_Type: Disease or Syndrome
Preferred_Name: Soft Tissue Disorder
UMLS_CUI: C0263978
Legacy_Concept_Name: Soft_Tissue_Disorder
has exact synonym: Soft Tissue Disease
has exact synonym: Soft Tissue Diseases
has exact synonym: Soft Tissue Disorder
has exact synonym: Soft Tissue Disorders

Disorder by Site
type: Class
subclass of: Disease or Disorder
definition: A term that refers to the classification of a disorder according to the anatomic site that is involved in the pathologic process.
imported from: ncit.owl
code: C27551
Semantic_Type: Disease or Syndrome
Preferred_Name: Disorder by Site
UMLS_CUI: C1333305
Concept_Status: Header_Concept
Legacy_Concept_Name: Disorder_by_Site
has exact synonym: Disease by Site
has exact synonym: Disorder by Site

Dermatosis
type: Class
subclass of: Non-Neoplastic Skin Disorder
definition: A disorder involving lesions or eruptions of the skin, usually without inflammation.
imported from: ncit.owl
code: C27554
Semantic_Type: Disease or Syndrome
Display_Name: Dermatosis
Preferred_Name: Dermatosis
NCI_META_CUI: CL448476
Legacy_Concept_Name: Dermatosis
has exact synonym: Dermatosis
in subset: NCIT C118168

Non-Neoplastic Skin Disorder
type: Class
subclass of: Skin Disorder
subclass of: Non-Neoplastic Disorder by Site
subclass of: Restriction
  on property: Disease_Has_Primary_Anatomic_Site
  some values from: Skin
imported from: ncit.owl
code: C27555
Semantic_Type: Disease or Syndrome
Preferred_Name: Non-Neoplastic Skin Disorder
UMLS_CUI: C1335042
Legacy_Concept_Name: Non-Neoplastic_Skin_Disorder
has exact synonym: Non-Neoplastic Cutaneous Disorder
has exact synonym: Non-Neoplastic Skin Disorder

Head and Neck Disorder
type: Class
subclass of: Disorder by Site
subclass of: Restriction
  on property: Disease_Has_Associated_Anatomic_Site
  some values from: Head and Neck
definition: A non-neoplastic or neoplastic disorder that affects the anatomic structures of the head and neck region. This category includes inflammatory disorders, benign neoplasms, precancerous conditions, and malignant neoplasms.
imported from: ncit.owl
code: C27571
Semantic_Type: Disease or Syndrome
Preferred_Name: Head and Neck Disorder
UMLS_CUI: C1333941
Legacy_Concept_Name: Head_and_Neck_Disorder
has exact synonym: Head and Neck Disorder

Non-Neoplastic Bone Disorder
type: Class
subclass of: Musculoskeletal System Disorder
subclass of: Non-Neoplastic Connective and Soft Tissue Disorder
subclass of: Connective Tissue Disorder
subclass of: Restriction
  on property: Disease_Has_Primary_Anatomic_Site
  some values from: Bone
definition: A non-neoplastic disorder that affects the bone or articular cartilage.
imported from: ncit.owl
code: C27572
Semantic_Type: Disease or Syndrome
Preferred_Name: Non-Neoplastic Bone Disorder
UMLS_CUI: C1334997
Legacy_Concept_Name: Non-Neoplastic_Bone_Disorder
has exact synonym: Non-Neoplastic Bone Disorder

Non-Neoplastic Soft Tissue Disorder
type: Class
subclass of: Non-Neoplastic Connective and Soft Tissue Disorder
subclass of: Soft Tissue Disorder
definition: A non-neoplastic disorder that affects the soft tissue.
imported from: ncit.owl
code: C27573
Semantic_Type: Disease or Syndrome
Preferred_Name: Non-Neoplastic Soft Tissue Disorder
UMLS_CUI: C1335043
Legacy_Concept_Name: Non-Neoplastic_Soft_Tissue_Disorder
has exact synonym: Non-Neoplastic Soft Tissue Disorder

Connective and Soft Tissue Disorder
type: Class
subclass of: Disorder by Site
subclass of: Restriction
  on property: Disease_Has_Associated_Anatomic_Site
  some values from: Connective and Soft Tissue
definition: A non-neoplastic or neoplastic disorder that affects the connective and soft tissue.
imported from: ncit.owl
code: C27574
Semantic_Type: Disease or Syndrome
Preferred_Name: Connective and Soft Tissue Disorder
UMLS_CUI: C1333150
Legacy_Concept_Name: Connective_and_Soft_Tissue_Disorder
has exact synonym: Connective and Soft Tissue Disease
has exact synonym: Connective and Soft Tissue Diseases
has exact synonym: Connective and Soft Tissue Disorder

局部感染性疾患
type: Class
subclass of: Infectious Disorder
imported from: ncit.owl
code: C27583
Semantic_Type: Disease or Syndrome
Preferred_Name: Infectious Disorder by Site
UMLS_CUI: C1334175
Concept_Status: Header_Concept
Legacy_Concept_Name: Infectious_Disorder_by_Site
has exact synonym: Infectious Disorder by Site

Non-Neoplastic Head and Neck Disorder
type: Class
subclass of: Head and Neck Disorder
subclass of: Non-Neoplastic Disorder by Site
definition: A non-neoplastic disorder that affects the anatomic structures of the head and neck region.
imported from: ncit.owl
code: C27663
Semantic_Type: Disease or Syndrome
Preferred_Name: Non-Neoplastic Head and Neck Disorder
UMLS_CUI: C1335014
Legacy_Concept_Name: Non-Neoplastic_Head_and_Neck_Disorder
has exact synonym: Non-Neoplastic Head and Neck Disease
has exact synonym: Non-Neoplastic Head and Neck Disorder

Congenital Abnormality
type: Class
subclass of: Congenital or Acquired Anatomic Abnormality
definition: Any abnormality, anatomical or biochemical, evident at birth or during the neonatal period.
imported from: ncit.owl
Has_CDRH_Parent: FDA Patient Problem Code Hierarchy
Has_NICHD_Parent: Congenital or Acquired Anatomic Abnormality
Has_NICHD_Parent: Pediatric Disorder
code: C2849
Semantic_Type: Congenital Abnormality
Semantic_Type: Disease or Syndrome
Preferred_Name: Congenital Abnormality
UMLS_CUI: C0000768
FDA_Table: Patient Code (Appendix B)
Contributing_Source: CDISC
Contributing_Source: FDA
Contributing_Source: NICHD
ALT_DEFINITION: A morphologic defect of an organ, part of an organ, or larger region of the body that results from an intrinsically abnormal developmental process during gestation.
Legacy_Concept_Name: Congenital_Abnormality
NICHD_Hierarchy_Term: Congenital Malformation
has exact synonym: Birth Defect
has exact synonym: CONGENITAL DEFECT/DEFORMITY
has exact synonym: Congenital Abnormality
has exact synonym: Congenital Anatomic Abnormality
has exact synonym: Congenital Anatomical Abnormality
has exact synonym: Congenital Anomalies of Fetus
has exact synonym: Congenital Anomaly
has exact synonym: Congenital Anomaly or Birth Defect
has exact synonym: Congenital Defect
has exact synonym: Congenital Defect/Deformity
has exact synonym: Congenital Deformity
has exact synonym: Congenital Malformation
has exact synonym: DEFECT/DEFORMITY, CONGENITAL
has exact synonym: Defect/Deformity, Congenital
has exact synonym: Deformity/Defect, Congenital
has exact synonym: SCONG
in subset: NCIT C118466
in subset: NCIT C54447
in subset: NCIT C54450
in subset: NCIT C54583
in subset: NCIT C61410
in subset: NCIT C62596
in subset: NCIT C82590
in subset: NCIT C89506
in subset: NCIT C90259
in subset: NCIT C99147

细菌感染
type: Class
subclass of: Infectious Disorder
definition: An acute infectious disorder that is caused by gram positive or gram negative bacteria; representative examples include pneumococcal, streptococcal, salmonella, and meningeal infections.
imported from: ncit.owl
Has_CDRH_Parent: Infectious Disorder
Has_NICHD_Parent: Infection
code: C2890
Semantic_Type: Disease or Syndrome
Display_Name: Bacterial Infection
Preferred_Name: Bacterial Infection
UMLS_CUI: C0004623
FDA_Table: Patient Code (Appendix B)
Contributing_Source: CTRP
Contributing_Source: FDA
Contributing_Source: NICHD
ALT_DEFINITION: An infection caused by a bacterium.
Legacy_Concept_Name: Bacterial_Infection
NICHD_Hierarchy_Term: Bacterial Infection
has exact synonym: Bacterial Disease
has exact synonym: Bacterial Disorder
has exact synonym: Bacterial Infection
has exact synonym: Infection, Bacterial
in subset: NCIT C116977
in subset: NCIT C128453
in subset: NCIT C54450
in subset: NCIT C62596
in subset: NCIT C89506
in subset: NCIT C90259
in subset: NCIT C96388

Cholesteatoma
type: Class
subclass of: Non-Neoplastic Head and Neck Disorder
definition: A pathologic process characterized by the proliferation of keratinizing squamous epithelium resulting in the accumulation of keratin and cells in the middle ear and/or mastoid. It may be congenital or acquired. If left untreated, it may increase in size and destroy adjacent structures.
imported from: ncit.owl
code: C2944
Semantic_Type: Disease or Syndrome
Preferred_Name: Cholesteatoma
UMLS_CUI: C0008373
Legacy_Concept_Name: Cholesteatoma
has exact synonym: Cholesteatoma

Cyst
type: Class
subclass of: Other Finding
definition: A sac-like closed membranous structure that may be empty or contain fluid or amorphous material.
imported from: ncit.owl
Has_NICHD_Parent: Congenital or Acquired Anatomic Abnormality
code: C2978
Semantic_Type: Finding
Preferred_Name: Cyst
UMLS_CUI: C0010709
Contributing_Source: CDISC
Contributing_Source: NICHD
ALT_DEFINITION: A sac or capsule in the body. It may be filled with fluid or other material.
ALT_DEFINITION: A sac-like closed pocket of tissue that may be empty or may be filled with fluid, gas, semisolid, or amorphous material. It typically has an outer epithelial-lined capsule.
Legacy_Concept_Name: Cyst
NICHD_Hierarchy_Term: Cyst
has exact synonym: CYST
has exact synonym: Cyst
has exact synonym: cyst
in subset: NCIT C120531
in subset: NCIT C124310
in subset: NCIT C61410
in subset: NCIT C77526
in subset: NCIT C90259
in subset: NCIT C99147

Dermatitis
type: Class
subclass of: Dermatosis
definition: An inflammatory process affecting the skin. Signs include red rash, itching, and blister formation. Representative examples are contact dermatitis, atopic dermatitis, and seborrheic dermatitis.
imported from: ncit.owl
Has_CDRH_Parent: FDA Patient Problem Code Hierarchy
code: C2983
Semantic_Type: Disease or Syndrome
Display_Name: Dermatitis
Preferred_Name: Dermatitis
UMLS_CUI: C0011603
FDA_Table: Patient Code (Appendix B)
Contributing_Source: FDA
ALT_DEFINITION: Inflammation of the skin.
Legacy_Concept_Name: Dermatitis
has exact synonym: Dermatitis
has exact synonym: Inflammation Of Skin
has exact synonym: Inflammation of Skin
has exact synonym: Inflammation of the Skin
has exact synonym: Skin Inflammation
has exact synonym: dermatitis
in subset: NCIT C118168
in subset: NCIT C54450
in subset: NCIT C62596

Disease or Disorder
type: Class
subclass of: 病理
definition: Any abnormal condition of the body or mind that causes discomfort, dysfunction, or distress to the person affected or those in contact with the person. The term is often used broadly to include injuries, disabilities, syndromes, symptoms, deviant behaviors, and atypical variations of structure and function.
imported from: ncit.owl
Has_NICHD_Parent: Pediatric Terminology
code: C2991
Semantic_Type: Disease or Syndrome
Preferred_Name: Disease or Disorder
UMLS_CUI: C0012634
Contributing_Source: CDISC-GLOSS
Contributing_Source: NICHD
ALT_DEFINITION: Any deviation from or interruption of the normal structure or function of a part, organ, or system of the body as manifested by characteristic symptoms and signs. [Dorland's Medical Dictionary]
ALT_DEFINITION: In medicine, a health problem with certain characteristics or symptoms.
Legacy_Concept_Name: Diseases_and_Disorders
NICHD_Hierarchy_Term: Disease or Disorder
has exact synonym: Disease
has exact synonym: Disease or Disorder
has exact synonym: Disease or Disorder, Non-Neoplastic
has exact synonym: Diseases
has exact synonym: Diseases and Disorders
has exact synonym: Disorder
has exact synonym: Disorders
has exact synonym: Other Disease
has exact synonym: condition
has exact synonym: disease
has exact synonym: disorder
in subset: NCIT C138188
in subset: NCIT C138189
in subset: NCIT C61410
in subset: NCIT C67497
in subset: NCIT C90259
in subset: NCIT C99147

湿疹
type: Class
subclass of: Dermatitis
definition: A form of dermatitis characterized by red, itchy, scaly, or crusty patches that can be chronic or intermittent.
imported from: ncit.owl
Has_NICHD_Parent: Skin Disorder
code: C3001
Semantic_Type: Disease or Syndrome
Preferred_Name: Eczema
UMLS_CUI: C0013595
Contributing_Source: MedDRA
Contributing_Source: NICHD
ALT_DEFINITION: A form of dermatitis characterized by red, itchy, scaly, or crusty patches that can be chronic or intermittent.
ALT_DEFINITION: A group of conditions in which the skin becomes inflamed, forms blisters, and becomes crusty, thick, and scaly. Eczema causes burning and itching, and may occur over a long period of time. Atopic dermatitis is the most common type of eczema.
Legacy_Concept_Name: Eczema
NICHD_Hierarchy_Term: Eczema
has exact synonym: Atopic Dermatitis
has exact synonym: Eczema
has exact synonym: Eczematous Dermatitis
has exact synonym: eczema
in subset: NCIT C118464
in subset: NCIT C90259

Exostosis
type: Class
subclass of: Non-Neoplastic Bone Disorder
definition: Non-neoplastic overgrowth of bone.
imported from: ncit.owl
code: C3029
Semantic_Type: Disease or Syndrome
Preferred_Name: Exostosis
UMLS_CUI: C1442903
ALT_DEFINITION: A disorder characterized by non-neoplastic overgrowth of bone.
Legacy_Concept_Name: Exostosis
has exact synonym: Exostosis

Fibrosis
type: Class
subclass of: Morphologic Finding
definition: The formation of fibrous tissue.
imported from: ncit.owl
Has_CDRH_Parent: FDA Patient Problem Code Hierarchy
code: C3044
Semantic_Type: Finding
Preferred_Name: Fibrosis
UMLS_CUI: C0016059
FDA_Table: Patient Code (Appendix B)
Contributing_Source: CDISC
Contributing_Source: FDA
ALT_DEFINITION: Increase in collagen and low numbers of fibrocytes.
ALT_DEFINITION: The formation of fibrous tissue; fibroid or fibrous degeneration.
ALT_DEFINITION: The growth of fibrous tissue.
Legacy_Concept_Name: Fibrosis
has exact synonym: FIBROSIS
has exact synonym: Fibrosis
has exact synonym: fibrosis
in subset: NCIT C120531
in subset: NCIT C54450
in subset: NCIT C61410
in subset: NCIT C62596
in subset: NCIT C77526

瘘
type: Class
subclass of: Congenital or Acquired Anatomic Abnormality
definition: Abnormal epithelial-lined communication between two anatomical structures.
imported from: ncit.owl
Has_CDRH_Parent: FDA Patient Problem Code Hierarchy
Has_NICHD_Parent: Congenital or Acquired Anatomic Abnormality
code: C3045
Semantic_Type: Anatomical Abnormality
Semantic_Type: Disease or Syndrome
Display_Name: Fistula
Preferred_Name: Fistula
UMLS_CUI: C0016169
FDA_Table: Patient Code (Appendix B)
Contributing_Source: CDISC
Contributing_Source: CTRP
Contributing_Source: FDA
Contributing_Source: MedDRA
Contributing_Source: NICHD
ALT_DEFINITION: Abnormal epithelial-lined communication between two structures.
ALT_DEFINITION: Abnormal passage or communication between two normally unconnected structures, body cavities, or the surface of the body. (Makris S, Solomon HM, Clark R, Shiota K, Barbellion S, Buschmann J, Ema M, Fujiwara M, Grote K, Hazelden KP, Hew KW, Horimoto M, Ooshima Y, Parkinson M, Wise LD. Terminology of developmental abnormalities in common laboratory mammals (Version 2). Part B. Birth Defects Res B Dev Reprod Toxicol. 2009 Aug;86(4):227-327.)
ALT_DEFINITION: An abnormal opening or passage between two organs or between an organ and the surface of the body. Fistulas may be caused by injury, infection, or inflammation, or may be created during surgery.
Legacy_Concept_Name: Fistula
NICHD_Hierarchy_Term: Fistula
has exact synonym: FISTULA
has exact synonym: Fistula
has exact synonym: Pathologic Fistula
has exact synonym: fistula
in subset: NCIT C118168
in subset: NCIT C118464
in subset: NCIT C124310
in subset: NCIT C54450
in subset: NCIT C61410
in subset: NCIT C62596
in subset: NCIT C77526
in subset: NCIT C90259

Granuloma
type: Class
subclass of: Morphologic Finding
definition: An inflammatory reaction usually caused by infectious organisms, foreign bodies, or cholesterol deposits. It is characterized by the presence of epithelioid histiocytes and chronic inflammation.
imported from: ncit.owl
Has_CDRH_Parent: FDA Patient Problem Code Hierarchy
Has_NICHD_Parent: Skin Disorder
code: C3064
Semantic_Type: Finding
Preferred_Name: Granuloma
UMLS_CUI: C0018188
FDA_Table: Patient Code (Appendix B)
Contributing_Source: CDISC
Contributing_Source: FDA
Contributing_Source: MedDRA
Contributing_Source: NICHD
ALT_DEFINITION: A lesion characterized by the presence of epithelioid histiocytes and chronic inflammation.
ALT_DEFINITION: An organized chronic inflammatory reaction characterized by the presence of epithelioid macrophages. Giant cells and/or necrosis can be observed.
Legacy_Concept_Name: Granuloma
NICHD_Hierarchy_Term: Granuloma
has exact synonym: GRANULOMA
has exact synonym: Granuloma
has exact synonym: Granulomatous Lesion
in subset: NCIT C118464
in subset: NCIT C120531
in subset: NCIT C54450
in subset: NCIT C61410
in subset: NCIT C62596
in subset: NCIT C77526
in subset: NCIT C90259

Inflammation
type: Class
subclass of: Other Finding
definition: A localized protective response resulting from injury or destruction of tissues. Inflammation serves to destroy, dilute, or wall off both the injurious agent and the injured tissue. In the acute phase, inflammation is characterized by the signs of pain, heat, redness, swelling, and loss of function. Histologically, inflammation involves a complex series of events, including dilatation of arterioles, capillaries, and venules, with increased permeability and blood flow; exudation of fluids, including plasma proteins; and leukocyte migration into the site of inflammation.
imported from: ncit.owl
Has_CDRH_Parent: FDA Patient Problem Code Hierarchy
code: C3137
Semantic_Type: Finding
Preferred_Name: Inflammation
UMLS_CUI: C0021368
FDA_Table: Patient Code (Appendix B)
Contributing_Source: CDISC
Contributing_Source: FDA
ALT_DEFINITION: A response to an injury or abnormal stimuli characterized by inflammatory cell infiltration and varying degrees of vascular and tissue reactions (hyperemia, edema, fibrin, and/or fibrosis).
ALT_DEFINITION: Redness, swelling, pain, and/or a feeling of heat in an area of the body. This is a protective reaction to injury, disease, or irritation of the tissues.
Legacy_Concept_Name: Inflammation
has exact synonym: INFLAMMATION
has exact synonym: Inflammation
has exact synonym: inflammation
in subset: NCIT C120531
in subset: NCIT C54450
in subset: NCIT C61410
in subset: NCIT C62596
in subset: NCIT C77526

Cerumen
type: Class
subclass of: Exocrine Gland Fluid or Secretion
definition: A soft yellow wax secreted by glands in the ear canal.
imported from: ncit.owl
code: C32293
Semantic_Type: Body Substance
Preferred_Name: Cerumen
UMLS_CUI: C0740486
Contributing_Source: CDISC
ALT_DEFINITION: A wax secreted by glands in the ear canal.
Legacy_Concept_Name: Cerumen
has exact synonym: CERUMEN
has exact synonym: Cerumen
has exact synonym: Earwax
in subset: NCIT C61410
in subset: NCIT C66830
in subset: NCIT C78734

Neoplasm
type: Class
subclass of: Disease or Disorder
subclass of: Restriction
  on property: Disease_Has_Abnormal_Cell
  some values from: Neoplastic Cell
definition: A benign or malignant tissue growth resulting from uncontrolled cell proliferation. Benign neoplastic cells resemble normal cells without exhibiting significant cytologic atypia, while malignant cells exhibit overt signs such as dysplastic features, atypical mitotic figures, necrosis, nuclear pleomorphism, and anaplasia. Representative examples of benign neoplasms include papillomas, cystadenomas, and lipomas; malignant neoplasms include carcinomas, sarcomas, lymphomas, and leukemias.
imported from: ncit.owl
Has_NICHD_Parent: Disease or Disorder
code: C3262
Semantic_Type: Neoplastic Process
Preferred_Name: Neoplasm
UMLS_CUI: C0375111
Contributing_Source: CTRP
Contributing_Source: NICHD
ALT_DEFINITION: An abnormal mass of tissue that results when cells divide more than they should or do not die when they should. Neoplasms may be benign (not cancer), or malignant (cancer).
Neoplastic_Status: Undetermined
Legacy_Concept_Name: Neoplasm
NICHD_Hierarchy_Term: Neoplasm
Publish_Value_Set: Yes
has exact synonym: Neoplasia
has exact synonym: Neoplasm
has exact synonym: Neoplastic Disease
has exact synonym: Neoplastic Growth
has exact synonym: Other Neoplasm
has exact synonym: neoplasia
has exact synonym: neoplasm
has exact synonym: tumor
in subset: NCIT C116977
in subset: NCIT C138188
in subset: NCIT C138189
in subset: NCIT C142799
in subset: NCIT C90259
in subset: NCIT C99147

Hair
type: Class
subclass of: 病理

Finding
type: Class
subclass of: Disease, Disorder or Finding
definition: Clinical, laboratory or molecular evidence, or absence of evidence of disease.
imported from: ncit.owl
Has_NICHD_Parent: Pediatric Terminology
code: C3367
Semantic_Type: Finding
Preferred_Name: Finding
UMLS_CUI: C1285578
Contributing_Source: CDISC-GLOSS
Contributing_Source: NICHD
ALT_DEFINITION: A meaningful interpretation of data or observations resulting from planned evaluations. Compare to conclusion, hypothesis.
Legacy_Concept_Name: Finding
NICHD_Hierarchy_Term: Finding
has exact synonym: Finding
has exact synonym: Observable Entity
has exact synonym: finding
in subset: NCIT C61410
in subset: NCIT C67497
in subset: NCIT C89506
in subset: NCIT C90259

Skin Disorder
type: Class
subclass of: Disorder by Site
subclass of: Restriction
  on property: Disease_Has_Associated_Anatomic_Site
  some values from: Integumentary System
subclass of: Restriction
  on property: Disease_Has_Finding
  some values from: Cutaneous Involvement
definition: Any deviation from the normal structure or function of the skin or subcutaneous tissue that is manifested by a characteristic set of symptoms and signs.
imported from: ncit.owl
Has_NICHD_Parent: Disease or Disorder
code: C3371
Semantic_Type: Disease or Syndrome
Preferred_Name: Skin Disorder
UMLS_CUI: C0037274
Contributing_Source: NICHD
Legacy_Concept_Name: Skin_Disorder
NICHD_Hierarchy_Term: Skin Disorder
has exact synonym: Cutaneous Disorder
has exact synonym: Disorder of Skin
has exact synonym: Skin Diseases and Manifestations
has exact synonym: Skin Disorder
in subset: NCIT C90259
in subset: NCIT C99147

Swelling
type: Class
subclass of: Sign
definition: Enlargement; expansion in size; sign of inflammation
imported from: ncit.owl
Has_CDRH_Parent: FDA Patient Problem Code Hierarchy
code: C3399
Semantic_Type: Sign or Symptom
Preferred_Name: Swelling
UMLS_CUI: C0038999
FDA_Table: Patient Code (Appendix B)
Contributing_Source: FDA
Legacy_Concept_Name: Swelling
has exact synonym: Swelling
in subset: NCIT C54450
in subset: NCIT C62596

Exocrine Gland Fluid or Secretion
type: Class
subclass of: Body Fluid or Substance
subclass of: Restriction
  on property: Anatomic_Structure_Has_Location
  some values from: Exocrine System
imported from: ncit.owl
code: C34062
Semantic_Type: Body Substance
Preferred_Name: Exocrine Gland Fluid or Secretion
UMLS_CUI: C1516992
Legacy_Concept_Name: Exocrine_Gland_Fluid_or_Secretion
has exact synonym: Exocrine Gland Fluid or Secretion

Scar
type: Class
subclass of: Fibrosis
definition: A permanent mark left on the skin in the process of wound healing.
imported from: ncit.owl
Has_CDRH_Parent: Fibrosis
Has_NICHD_Parent: Integumentary System Finding
code: C34483
Semantic_Type: Finding
Preferred_Name: Scar
UMLS_CUI: C2004491
FDA_Table: Patient Code (Appendix B)
Contributing_Source: CDISC
Contributing_Source: FDA
Contributing_Source: MedDRA
Contributing_Source: NICHD
ALT_DEFINITION: A mark left (usually on the skin) by the healing of injured tissue.
ALT_DEFINITION: A permanent mark left on the skin in the process of wound healing.
Legacy_Concept_Name: Scar
NICHD_Hierarchy_Term: Scar
has exact synonym: SCAR
has exact synonym: Scar
has exact synonym: Scarring
in subset: NCIT C102590
in subset: NCIT C118464
in subset: NCIT C54450
in subset: NCIT C61410
in subset: NCIT C62596
in subset: NCIT C66830
in subset: NCIT C90259

Hair Disorder
type: Class
subclass of: Skin Disorder
subclass of: Restriction
  on property: Disease_Has_Primary_Anatomic_Site
  some values from: Hair
definition: A non-neoplastic or neoplastic disorder involving the hair. Representative examples include folliculitis, alopecia, tricholemmoma, and pilomatrical carcinoma.
imported from: ncit.owl
code: C34656
Semantic_Type: Disease or Syndrome
Preferred_Name: Hair Disorder
UMLS_CUI: C0018500
Legacy_Concept_Name: Hair_Disorder
has exact synonym: Hair Disorder

疝
type: Class
subclass of: Congenital or Acquired Anatomic Abnormality
definition: The protrusion of part of an organ or fibroadipose tissue through an abnormal opening.
imported from: ncit.owl
Has_CDRH_Parent: FDA Patient Problem Code Hierarchy
Has_NICHD_Parent: Musculoskeletal System Disorder
code: C34685
Semantic_Type: Anatomical Abnormality
Semantic_Type: Disease or Syndrome
Display_Name: Hernia
Preferred_Name: Hernia
UMLS_CUI: C0019270
FDA_Table: Patient Code (Appendix B)
Contributing_Source: CDISC
Contributing_Source: CTRP
Contributing_Source: FDA
Contributing_Source: NICHD
ALT_DEFINITION: The bulging of an internal organ through a weak area or tear in the muscle or other tissue that holds it in place. Most hernias occur in the abdomen.
ALT_DEFINITION: The protrusion of part of an organ or fibroadipose tissue through an abnormal opening. (NCI)
Legacy_Concept_Name: Hernia
NICHD_Hierarchy_Term: Hernia
has exact synonym: HERNIA
has exact synonym: Hernia
has exact synonym: hernia
in subset: NCIT C116977
in subset: NCIT C124310
in subset: NCIT C54450
in subset: NCIT C61410
in subset: NCIT C62596
in subset: NCIT C77526
in subset: NCIT C90259

Keratosis
type: Class
subclass of: Integumentary System Finding
definition: Excessive growth of keratin on the skin.
imported from: ncit.owl
code: C34747
Semantic_Type: Finding
Preferred_Name: Keratosis
UMLS_CUI: C0022593
Legacy_Concept_Name: Keratosis
has exact synonym: Keratosis

Staphylococcal Infection
type: Class
subclass of: 细菌感染
definition: infection by Staphylococcus.
imported from: ncit.owl
code: C35038
Semantic_Type: Disease or Syndrome
Preferred_Name: Staphylococcal Infection
UMLS_CUI: C0038160
Legacy_Concept_Name: Staphylococcal_Infection
has exact synonym: Staphylococcal Infection

Non-Neoplastic Hair Disorder
type: Class
subclass of: Non-Neoplastic Skin Disorder
subclass of: Hair Disorder
definition: A non-neoplastic disorder that affects the hair. Representative examples may include alopecia, male pattern baldness, hirsutism, and hair shaft disorders.
imported from: ncit.owl
code: C35784
Semantic_Type: Disease or Syndrome
Preferred_Name: Non-Neoplastic Hair Disorder
UMLS_CUI: C1335013
Legacy_Concept_Name: Non-Neoplastic_Hair_Disorder
has exact synonym: Non-Neoplastic Hair Disorder

Morphologic Finding
type: Class
subclass of: Microscopic Finding
definition: A light microscopic finding that describes the cellular characteristics and architectural patterns of cell populations in a tissue sample.
imported from: ncit.owl
code: C35867
Semantic_Type: Finding
Preferred_Name: Morphologic Finding
UMLS_CUI: C0700329
Legacy_Concept_Name: Morphologic_Finding
has exact synonym: Morphologic Finding

Finding by Site or System
type: Class
subclass of: Finding
definition: A term that refers to the classification of a clinical or laboratory finding according to the anatomic site or system that is involved.
imported from: ncit.owl
code: C36278
Semantic_Type: Finding
Preferred_Name: Finding by Site or System
UMLS_CUI: C1333618
Concept_Status: Header_Concept
Legacy_Concept_Name: Finding_by_Site_or_System
has exact synonym: Finding by Site or System

Integumentary System Finding
type: Class
subclass of: Finding by Site or System
definition: Symptoms, physical examination results, and/or laboratory test results related to the integumentary system.
imported from: ncit.owl
Has_NICHD_Parent: Finding
code: C36281
Semantic_Type: Finding
Preferred_Name: Integumentary System Finding
UMLS_CUI: C1291044
Contributing_Source: CDISC
Contributing_Source: NICHD
ALT_DEFINITION: Symptoms, physical examination results, and/or laboratory test results related to the integumentary system. (NCI)
Legacy_Concept_Name: Integumentary_System_Finding
NICHD_Hierarchy_Term: Integumentary System Finding
has exact synonym: INTEGUMENTARY SYSTEM
has exact synonym: Integumentary System Finding
has exact synonym: Skin Finding
in subset: NCIT C61410
in subset: NCIT C77526
in subset: NCIT C88026
in subset: NCIT C90259
in subset: NCIT C99147

Congenital or Acquired Anatomic Abnormality
type: Class
subclass of: Non-Neoplastic Disorder by Special Category
definition: An anatomic abnormality that is either present at birth or appears later in life.
imported from: ncit.owl
Has_NICHD_Parent: Disease or Disorder
code: C36287
Semantic_Type: Anatomical Abnormality
Semantic_Type: Disease or Syndrome
Preferred_Name: Congenital or Acquired Anatomic Abnormality
UMLS_CUI: C0302142
Contributing_Source: CDISC
Contributing_Source: NICHD
ALT_DEFINITION: A permanent structural change that is likely to adversely affect the form, survival or health of the species under study. (Gupta, R. C. ed. (2011) Reproductive and Developmental Toxicology. London, UK: Elsevier, Inc.)
Legacy_Concept_Name: Congenital_or_Acquired_Anatomic_Abnormality
NICHD_Hierarchy_Term: Congenital or Acquired Anatomic Abnormality
has exact synonym: Anatomic Abnormality
has exact synonym: Anatomical Abnormality
has exact synonym: Congenital or Acquired Anatomic Abnormality
has exact synonym: Congenital or Acquired Anatomical Abnormality
has exact synonym: Deformity
has exact synonym: MALFORMATION
in subset: NCIT C120531
in subset: NCIT C124313
in subset: NCIT C61410
in subset: NCIT C77526
in subset: NCIT C90259

Finding by Cause
type: Class
subclass of: Finding
imported from: ncit.owl
code: C36291
Semantic_Type: Finding
Preferred_Name: Finding by Cause
UMLS_CUI: C1333617
Concept_Status: Header_Concept
Legacy_Concept_Name: Finding_by_Cause
has exact synonym: Finding by Cause

Other Finding
type: Class
subclass of: Finding
imported from: ncit.owl
code: C36295
Semantic_Type: Finding
Preferred_Name: Other Finding
UMLS_CUI: C1335151
Concept_Status: Header_Concept
Legacy_Concept_Name: Other_Finding
has exact synonym: Other Finding

Cutaneous Involvement
type: Class
subclass of: 病理

Adverse Event
type: Class
subclass of: Finding by Cause
definition: Any unfavorable or unintended disease, sign, or symptom (including an abnormal laboratory finding) that is temporally associated with the use of a medical treatment or procedure, and that may or may not be considered related to the medical treatment or procedure. Such events can be related to the intervention, dose, route of administration, patient, or caused by an interaction with another drug(s) or procedure(s).
imported from: ncit.owl
code: C41331
Semantic_Type: Finding
Preferred_Name: Adverse Event
UMLS_CUI: C0877248
Contributing_Source: BRIDG
Contributing_Source: CDISC
Contributing_Source: CDISC-GLOSS
Contributing_Source: FDA
ALT_DEFINITION: An unexpected medical problem that happens during treatment with a drug or other therapy. Adverse effects do not have to be caused by the drug or therapy, and they may be mild, moderate, or severe.
ALT_DEFINITION: Any unfavorable and unintended sign, symptom, disease, or other medical occurrence with a temporal association with the use of a medical product, procedure or other therapy, or in conjunction with a research study, regardless of causal relationship. EXAMPLE(S): death, back pain, headache, pulmonary embolism, heart attack
ALT_DEFINITION: Any unfavorable or unintended disease, sign, or symptom (including an abnormal laboratory finding) that is temporally associated with the use of a medical treatment or procedure, and that may or may not be considered related to the medical treatment or procedure. Such events can be related to the intervention, dose, route of administration, patient, or caused by an interaction with another drug(s) or procedure(s).
ALT_DEFINITION: Any untoward medical occurrence in a patient or clinical investigation subject administered a pharmaceutical product and which does not necessarily have a causal relationship with this treatment. An adverse event (AE) can therefore be any unintended sign (including an abnormal laboratory finding), symptom, or disease temporally associated with the use of a medicinal (investigational) product, whether or not related to the medicinal (investigational) product. NOTE: For further information, see the ICH Guideline for Clinical Safety Data Management: Definitions and Standards for Expedited Reporting. [Modified from ICH E2A] Synonyms: side effect, adverse experience. See also serious adverse event, serious adverse experience. (CDISC glossary)
ALT_DEFINITION: Any untoward medical occurrence in a patient or clinical investigation subject administered a pharmaceutical product and which does not necessarily have a causal relationship with this treatment. an adverse event (AE) can therefore be any unintended sign (including an abnormal laboratory finding), symptom, or disease temporally associated with the use of a medicinal (investigational) product, whether or not related to the medicinal (investigational) product. NOTE: For further information, see the ICH Guideline for Clinical safety Data Management: Definitions and standards for expedited Reporting. [After ICH E2A] See also serious adverse event, serious adverse experience.
Legacy_Concept_Name: Adverse_Event
has exact synonym: ADVERSE EVENT
has exact synonym: AE
has exact synonym: Adverse Event
has exact synonym: Adverse Experience
has exact synonym: AdverseEvent
has exact synonym: adverse event
has exact synonym: adverse event (AE)
has exact synonym: adverse experience
has exact synonym: side effects
in subset: NCIT C54447
in subset: NCIT C54580
in subset: NCIT C61410
in subset: NCIT C66727
in subset: NCIT C66830
in subset: NCIT C67497

Substance
type: Class
subclass of: 病理

Hematoma
type: Class
subclass of: Other Finding
definition: A localized collection of blood, usually clotted, in an organ, space, or tissue, due to a break in the wall of a blood vessel.
imported from: ncit.owl
Has_CDRH_Parent: FDA Patient Problem Code Hierarchy
Has_NICHD_Parent: Congenital or Acquired Anatomic Abnormality
code: C50579
Semantic_Type: Finding
Preferred_Name: Hematoma
UMLS_CUI: C0018944
FDA_Table: Patient Code (Appendix B)
Contributing_Source: CTCAE
Contributing_Source: FDA
Contributing_Source: MedDRA
Contributing_Source: NICHD
ALT_DEFINITION: A disorder characterized by a localized collection of blood, usually clotted, in an organ, space, or tissue, due to a break in the wall of a blood vessel.
ALT_DEFINITION: A localized collection of blood, usually clotted, in an organ, space, or tissue, due to a break in the wall of a blood vessel.
ALT_DEFINITION: A localized collection of extra vascular blood.
ALT_DEFINITION: A pool of clotted or partially clotted blood in an organ, tissue, or body space, usually caused by a broken blood vessel.
Legacy_Concept_Name: Hematoma
NICHD_Hierarchy_Term: Hematoma
has exact synonym: Hematoma
has exact synonym: hematoma
in subset: NCIT C118464
in subset: NCIT C54450
in subset: NCIT C62596
in subset: NCIT C90259

Stenosis
type: Class
subclass of: Other Finding
definition: Narrowing or stricture of a vessel, duct or canal.
imported from: ncit.owl
Has_CDRH_Parent: FDA Patient Problem Code Hierarchy
Has_NICHD_Parent: Congenital or Acquired Anatomic Abnormality
code: C50754
Semantic_Type: Finding
Preferred_Name: Stenosis
UMLS_CUI: C1261287
FDA_Table: Patient Code (Appendix B)
Contributing_Source: FDA
Contributing_Source: MedDRA
Contributing_Source: NICHD
ALT_DEFINITION: Narrowing of the luminal diameter in a tubular organ or structure.
ALT_DEFINITION: Narrowing or stricture of a duct or canal.
Legacy_Concept_Name: Stenosis
NICHD_Hierarchy_Term: Stenosis
has exact synonym: Stenosis
has exact synonym: Stricture
in subset: NCIT C118464
in subset: NCIT C54450
in subset: NCIT C62596
in subset: NCIT C90259

Sign
type: Class
subclass of: Sign or Symptom
definition: Objective evidence of disease perceptible to the examining healthcare provider.
imported from: ncit.owl
code: C53458
Semantic_Type: Finding
Preferred_Name: Sign
UMLS_CUI: C0311392
Legacy_Concept_Name: Sign
has exact synonym: Sign

Non-Neoplastic Disorder
type: Class
subclass of: Disease or Disorder
definition: Any disorder other than abnormal tissue growth resulting from uncontrolled cell proliferation.
imported from: ncit.owl
code: C53529
Semantic_Type: Disease or Syndrome
Preferred_Name: Non-Neoplastic Disorder
UMLS_CUI: C1709246
Contributing_Source: CDISC
Contributing_Source: CTEP
ALT_DEFINITION: Any disorder other than abnormal tissue growth resulting from uncontrolled cell proliferation. (NCI)
Legacy_Concept_Name: Non-Neoplastic_Disorder
has exact synonym: NON-NEOPLASTIC
has exact synonym: Non-Neoplastic Disease
has exact synonym: Non-Neoplastic Disorder
has exact synonym: Non-neoplastic Disorder
has exact synonym: Non-neoplastic condition, NOS
has exact synonym: Non-neoplastic disorder, NOS
in subset: NCIT C102905
in subset: NCIT C103097
in subset: NCIT C61410
in subset: NCIT C77526
in subset: NCIT C90017

Non-Neoplastic Disorder by Site
type: Class
subclass of: Non-Neoplastic Disorder
imported from: ncit.owl
code: C53531
Semantic_Type: Disease or Syndrome
Preferred_Name: Non-Neoplastic Disorder by Site
UMLS_CUI: C1709247
Legacy_Concept_Name: Non-Neoplastic_Disorder_by_Site
has exact synonym: Non-Neoplastic Disease by Site
has exact synonym: Non-Neoplastic Disorder by Site

Non-Neoplastic Disorder by Special Category
type: Class
subclass of: Non-Neoplastic Disorder
imported from: ncit.owl
code: C53547
Semantic_Type: Disease or Syndrome
Preferred_Name: Non-Neoplastic Disorder by Special Category
UMLS_CUI: C1709248
Legacy_Concept_Name: Non-Neoplastic_Disorder_by_Special_Category
has exact synonym: Non-Neoplastic Disease by Special Category
has exact synonym: Non-Neoplastic Disorder by Special Category

FDA Patient Problem Code Hierarchy
type: Class
subclass of: 病理

Disease, Disorder or Finding
type: Class
subclass of: 病理
definition: A condition that is relevant to human neoplasms and non-neoplastic disorders. This includes observations, test results, history and other concepts relevant to the characterization of human pathologic conditions.
imported from: ncit.owl
code: C7057
Semantic_Type: Conceptual Entity
Preferred_Name: Disease, Disorder or Finding
UMLS_CUI: C1511989
Legacy_Concept_Name: Diseases_Disorders_and_Findings
has exact synonym: Disease, Disorder or Finding

软组织感染
type: Class
subclass of: Non-Neoplastic Soft Tissue Disorder
subclass of: 局部感染性疾患
definition: A bacterial infectious process affecting the soft tissues. A severe form caused by anaerobic or aerobic bacteria is associated with soft tissues necrosis and affects the subcutaneous adipose tissue, muscles, fascia, and the skin.
imported from: ncit.owl
code: C79745
Semantic_Type: Disease or Syndrome
Preferred_Name: Soft Tissue Infection
UMLS_CUI: C0149778
ALT_DEFINITION: A disorder characterized by an infectious process involving soft tissues.
Legacy_Concept_Name: Soft_Tissue_Infection
has exact synonym: Soft Tissue Infection
has exact synonym: Soft tissue infection

Microscopic Finding
type: Class
subclass of: Finding
definition: A finding resulting from the examination of a tissue sample under light or electron microscopy.
imported from: ncit.owl
code: C83490
Semantic_Type: Finding
Preferred_Name: Microscopic Finding
UMLS_CUI: C2827068
Legacy_Concept_Name: Microscopic_Finding
has exact synonym: Microscopic Finding

Pediatric Disorder
type: Class
subclass of: 病理

Pediatric Terminology
type: Class
subclass of: 病理

Inflammatory Disorder
type: Class
subclass of: Non-Neoplastic Disorder by Special Category
definition: An infectious or non infectious disorder characterized by signs and symptoms derived from focal or extensive tissue infiltration by acute (e.g., polymorphonuclear) or chronic (e.g., lymphocytic-plasmacytic) inflammatory cells. Representative examples of infectious disorders include viral infections, bacterial infections, and parasitic infections. Representative examples of non-infectious inflammatory disorders include inflammatory bowel disease and inflammatory polyps.
imported from: ncit.owl
code: C93210
Semantic_Type: Disease or Syndrome
Preferred_Name: Inflammatory Disorder
UMLS_CUI: C1290884
has exact synonym: Inflammatory Disease
has exact synonym: Inflammatory Disorder

Folliculitis
type: Class
subclass of: Non-Neoplastic Hair Disorder
definition: Inflammation of the hair follicles. Causes include excessive perspiration, skin infections, and skin wounds.
imported from: ncit.owl
Has_NICHD_Parent: Skin Disorder
code: C94408
Semantic_Type: Disease or Syndrome
Preferred_Name: Folliculitis
UMLS_CUI: C0016436
Contributing_Source: NICHD
ALT_DEFINITION: Inflammation of a follicle (a sac or pouch-like cavity), usually a hair follicle.
ALT_DEFINITION: Inflammation of the hair follicles.
NICHD_Hierarchy_Term: Folliculitis
has exact synonym: Folliculitis
has exact synonym: folliculitis
in subset: NCIT C128453
in subset: NCIT C90259

Pseudocyst
type: Class
subclass of: Other Finding
definition: A cyst-like structure that lacks an epithelial lining.
imported from: ncit.owl
code: C97117
Semantic_Type: Finding
Preferred_Name: Pseudocyst
UMLS_CUI: C0333161
has exact synonym: Pseudocyst

疖
type: Class
subclass of: Staphylococcal Infection
subclass of: Folliculitis
definition: Bacterial infection of the hair follicle and the surrounding skin. It is caused by Staphylococcus aureus. It presents as a painful, erythematous and swollen skin lesion.
imported from: ncit.owl
code: C99087
Semantic_Type: Disease or Syndrome
Preferred_Name: Furuncle
UMLS_CUI: C0242301
has exact synonym: Boil
has exact synonym: Furuncle

颞下颌关节
type: Class
subclass of: 正常头部的次要部分
id: FMA:54832

特征
type: Class
subclass of: disease quality

恶性
type: Class
subclass of: 特征
has PATO_ID: PATO:0002097
has_obo_namespace: quality

良性
type: Class
subclass of: 特征
has_obo_namespace: quality

后天性
type: Class
subclass of: 特征
has_obo_namespace: quality

先天性
type: Class
subclass of: 特征
has_obo_namespace: quality

光化性
type: Class
subclass of: 特征
has_obo_namespace: quality

化学性
type: Class
subclass of: 特征
has_obo_namespace: quality

弥漫性
type: Class
subclass of: 特征
has PATO_ID: PATO:0001513
has_obo_namespace: quality

阻塞性
type: Class
subclass of: 特征
has_obo_namespace: quality

出血性
type: Class
subclass of: 特征
has PATO_ID: PATO:0002105
has_obo_namespace: quality

感染性
type: Class
subclass of: 特征
has_obo_namespace: quality

结节性
type: Class
subclass of: 特征
has PATO_ID: PATO:0002125
has_obo_namespace: quality

非感染性
type: Class
subclass of: 特征
has_obo_namespace: quality

骨化
type: Class
subclass of: 时限
has PATO_ID: PATO:0001448
has_obo_namespace: quality

外耳脓肿
type: Class
subclass of: 外耳疾患
has_14396_code: H60.000

外耳疖
type: Class
subclass of: 外耳疾患
has_14396_code: H60.001

外耳痈
type: Class
subclass of: 外耳疾患
has_14396_code: H60.002

外耳蜂窝组织炎
type: Class
subclass of: 外耳疾患
has_14396_code: H60.100

恶性外耳炎
type: Class
subclass of: 外耳疾患
has_14396_code: H60.200

感染性外耳炎，其他的
type: Class
subclass of: 外耳疾患
subclass of: Restriction
  on property: has part
  some values from: 外耳
subclass of: Restriction
  on property: has disease quality
  some values from: 感染性
subclass of: Restriction
  on property: has disease quality
  some values from: 其他的
has_14396_code: H60.300

出血性外耳炎
type: Class
subclass of: 外耳疾患
has_14396_code: H60.301

弥漫性外耳炎
type: Class
subclass of: 外耳疾患
has_14396_code: H60.302

游泳者耳病
type: Class
subclass of: 外耳疾患
has_14396_code: H60.303

外耳胆脂瘤
type: Class
subclass of: 外耳疾患
has_14396_code: H60.400

外耳肉芽肿
type: Class
subclass of: 外耳疾患
has_14396_code: H60.401

外耳阻塞性角化病
type: Class
subclass of: 外耳疾患
has_14396_code: H60.402

外耳道肉芽肿
type: Class
subclass of: 外耳道疾患
has_14396_code: H60.403

急性外耳炎，非感染性
type: Class
subclass of: 外耳疾患
subclass of: Restriction
  on property: has part
  some values from: 外耳
subclass of: Restriction
  on property: has disease quality
  some values from: 非感染性
subclass of: Restriction
  on property: has disease quality
  some values from: 急性
has_14396_code: H60.500

外耳湿疹
type: Class
subclass of: 外耳疾患
has_14396_code: H60.501

急性光化性外耳炎
type: Class
subclass of: 外耳疾患
has_14396_code: H60.502

急性化学性外耳炎
type: Class
subclass of: 外耳疾患
has_14396_code: H60.503

外耳炎，其他特指的
type: Class
subclass of: 外耳疾患
has_14396_code: H60.800

慢性外耳炎
type: Class
subclass of: 外耳疾患
has_14396_code: H60.801

外耳炎
type: Class
subclass of: 外耳疾患
has_14396_code: H60.900

外耳道炎
type: Class
subclass of: 外耳道疾患
has_14396_code: H60.901

外耳软骨膜炎
type: Class
subclass of: 外耳疾患
has_14396_code: H61.000

慢性结节性耳轮软骨皮炎
type: Class
subclass of: 外耳疾患
has_14396_code: H61.001

耳廓瘢痕
type: Class
subclass of: 外耳疾患
has_14396_code: H61.002

耳廓非感染性疾患
type: Class
subclass of: 外耳疾患
has_14396_code: H61.100

后天性外耳畸形
type: Class
subclass of: 外耳疾患
has_14396_code: H61.101

耳廓瘘
type: Class
subclass of: 外耳疾患
has_14396_code: H61.102

耳廓假性囊肿
type: Class
subclass of: 外耳疾患
has_14396_code: H61.103

耳后血肿骨化
type: Class
subclass of: 外耳疾患
has_14396_code: H61.104

耳廓肿物
type: Class
subclass of: 外耳疾患
has_14396_code: H61.105

耵聍栓塞
type: Class
subclass of: 外耳疾患
has_14396_code: H61.200

后天性外耳道狭窄
type: Class
subclass of: 外耳疾患
has_14396_code: H61.300

外耳其他特指的疾患
type: Class
subclass of: 外耳疾患
has_14396_code: H61.800

颞下颌关节外耳道疝
type: Class
subclass of: 外耳道疾患
subclass of: Restriction
  on property: has part
  some values from: 外耳道
subclass of: Restriction
  on property: has part
  some values from: 颞下颌关节
has_14396_code: H61.801

外耳道外生骨疣
type: Class
subclass of: 外耳道疾患
has_14396_code: H61.802

外耳瘘
type: Class
subclass of: 外耳疾患
has_14396_code: H61.803

外耳道角化症
type: Class
subclass of: 外耳道疾患
has_14396_code: H61.804

外耳道坏死
type: Class
subclass of: 外耳道疾患
has_14396_code: H61.805

外耳道囊肿
type: Class
subclass of: 外耳道疾患
has_14396_code: H61.806

外耳异常
type: Class
subclass of: 外耳疾患
has_14396_code: H61.900

外耳道肿物
type: Class
subclass of: 外耳道疾患
has_14396_code: H61.901

后天性外耳道闭锁
type: Class
subclass of: 外耳道疾患
subclass of: Restriction
  on property: located in
  some values from: 外耳道
subclass of: Restriction
  on property: has disease quality
  some values from: 闭锁
subclass of: Restriction
  on property: has disease quality
  some values from: 后天性
has_14396_code: H61.902

disease quality
type: Class
subclass of: 物理的过程特性
label: 疾病特性

栓塞性
type: Class
subclass of: 特征

修饰
type: Class
subclass of: disease quality

其他的
type: Class
subclass of: 修饰

其他特指的
type: Class
subclass of: 修饰

空间位置
type: Class
subclass of: disease quality

在 的后面
type: Class
subclass of: 空间位置

在 的前面
type: Class
subclass of: 空间位置

在 的上面
type: Class
subclass of: 空间位置

在 的下面
type: Class
subclass of: 空间位置

外耳疾患
type: Class
subclass of: 疾病

外耳道疾患
type: Class
subclass of: 疾病

病理
type: Class
subclass of: disease quality

carbuncle
type: Class
subclass of: Disorder by Site

carbuncle
type: Class
subclass of: Skin Disorder

痈
type: Class
subclass of: Skin Disorder
definition: An infection of cutaneous and subcutaneous tissue that consists of a cluster of boils. Commonly, the causative agent is staphylococcus aureus. Carbuncles produce fever, leukocytosis, extreme pain, and prostration. [database_cross_reference: MESH:D002270]
database_cross_reference: DOID:2176; ICD9:680.9; ICD9:680.8; EFO:1000674; UMLS:C0007078; SCTID:416893007; MESH:D002270
has exact synonym: carbuncle and furuncle of leg except foot; carbuncle and furuncle of gluteal region; carbuncle and furuncle of neck; carbuncle and furuncle of hand; carbuncle and furuncle of face; carbuncle and furuncle of buttock; carbuncle and furuncle of trunk; carbuncle and furuncle of upper arm and forearm; carbuncle and furuncle of foot; carbuncle and furuncle of any part of face except eye

计划性过程
type: Class
equivalent class: Restriction
  on property: realizes
  some values from: Restriction
    on property: concretizes
    some values from: plan specification
subclass of: 过程
editor preferred label: planned process
example of usage: Injecting mice with a vaccine in order to test its efficacy
has curation status: ready for release
definition: A processual entity that realizes a plan which is the concretization of a plan specification.
editor note: 'Plan' includes a future direction sense. That can be problematic if plans are changed during their execution. There are however implicit contingencies for protocols that an agent has in his mind that can be considered part of the plan, even if the agent didn't have them in mind before. Therefore, a planned process can diverge from what the agent would have said the plan was before executing it, by adjusting to problems encountered during execution (e.g. choosing another reagent with equivalent properties, if the originally planned one has run out.)
editor note: We are only considering successfully completed planned processes. A plan may be modified, and details added during execution. For a given planned process, the associated realized plan specification is the one encompassing all changes made during execution. This means that all processes in which an agent acts towards achieving some objectives is a planned process.
term editor: Bjoern Peters
definition source: branch derived
curator note: 6/11/9: Edited at workshop. Used to include: is initiated by an agent
curator note: This class merges the previously separated objective driven process and planned process, as they the separation proved hard to maintain. (1/22/09, branch call)
imported from: obi.owl

评估性角色
type: Class
subclass of: 角色
subclass of: Restriction
  on property: inheres in
  some values from: 物质性实体
subclass of: Restriction
  on property: realized in
  all values from: 企图
editor preferred label: evaluant role
example of usage: When a specimen of blood is assayed for glucose concentration, the blood has the evaluant role. When measuring the mass of a mouse, the evaluant is the mouse. When measuring the time of DNA replication, the evaluant is the DNA. When measuring the intensity of light on a surface, the evaluant is the light source.
has curation status: ready for release
definition: a role that inheres in a material entity that is realized in an assay in which data is generated about the bearer of the evaluant role
editor note: Role call - 17nov-08: JF and MC think an evaluant role is always specified input of a process. Even in the case where we have an assay taking blood as evaluant and outputting blood, the blood is not the specified output at the end of the assay (the concentration of glucose in the blood is)
editor note: examples of features that could be described in an evaluant: quality.... e.g. "contains 10 pg/ml IL2", or "no glucose detected")
term editor: GROUP: Role Branch
definition source: OBI
curator note: Feb 10, 2009. changes after discussion at OBI Consortium Workshop Feb 2-6, 2009. accepted as core term.
imported from: obi.owl

企图
type: Class
equivalent class: Restriction
  on property: achieves_planned_objective
  some values from: assay objective
subclass of: 计划性过程
subclass of: Restriction
  on property: realizes
  some values from: 评估性角色
subclass of: Restriction
  on property: has_specified_input
  some values from: Class
    intersection of: 物质性实体
    intersection of: Restriction
      on property: has role
      some values from: 评估性角色
subclass of: Restriction
  on property: has_specified_output
  some values from: Class
    intersection of: 数据项
    intersection of: Restriction
      on property: is about
      some values from: Class
        intersection of: 物质性实体
        intersection of: Restriction
editor preferred label: assay
example of usage: Assay the wavelength of light emitted by excited Neon atoms. Count of geese flying over a house.
has curation status: ready for release
definition: A planned process with the objective to produce information about the material entity that is the evaluant, by physically examining it or its proxies.
editor note: 12/3/12: BP: the reference to the 'physical examination' is included to point out that a prediction is not an assay, as that does not require physical examiniation.
term editor: PlanAndPlannedProcess Branch
alternative term: measuring
alternative term: scientific observation
definition source: OBI branch derived
imported from: obi.owl
ISA alternative term: study assay
IEDB alternative term: any method

assay objective
type: Class
subclass of: objective specification
editor preferred label: assay objective
example of usage: the objective to determine the weight of a mouse.
has curation status: ready for release
definition: an objective specification to determine a specified type of information about an evaluated entity (the material entity bearing evaluant role)
term editor: PPPB branch
definition source: PPPB branch
imported from: obi.owl

特性
type: Class
definition: A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities
imported from: pato.owl
has_alternative_id: PATO:0000072
has exact synonym: trait
has_obo_namespace: quality
id: PATO:0000001

急性
type: Class
subclass of: 时限
definition: A quality of a process inhering in a bearer by virtue of the bearer's having a sudden onset, sharp rise, and short course.
imported from: pato.owl
is opposite of: 慢性
has_obo_namespace: quality
id: PATO:0000389
in subset: hpo slim
in subset: mpath slim
in subset: value slim

过程特性
type: Class
subclass of: 特性
definition: A quality which inheres in an process.
imported from: pato.owl
has_alternative_id: PATO:0001239
has_alternative_id: PATO:0001240
has exact synonym: quality of a process
has exact synonym: quality of occurrent
has exact synonym: quality of process
has exact synonym: relational quality of occurrent
has_obo_namespace: quality
id: PATO:0001236
comment: See comments of relational quality of a physical entity.

对象的物理特性
type: Class
subclass of: 特性
definition: A quality which inheres in a continuant.
imported from: pato.owl
has_alternative_id: PATO:0001237
has_alternative_id: PATO:0001238
database_cross_reference: snap:Quality
has exact synonym: monadic quality of a continuant
has exact synonym: multiply inhering quality of a physical entity
has exact synonym: quality of a continuant
has exact synonym: quality of a single physical entity
has exact synonym: quality of an object
has exact synonym: quality of continuant
has_narrow_synonym: monadic quality of an object
has_narrow_synonym: monadic quality of continuant
has_obo_namespace: quality
id: PATO:0001241
comment: Relational qualities are qualities that hold between multiple entities. Normal (monadic) qualities such as the shape of a eyeball exist purely as a quality of that eyeball. A relational quality such as sensitivity to light is a quality of that eyeball (and connecting nervous system) as it relates to incoming light waves/particles.

时限
type: Class
subclass of: disease quality
definition: A process quality inhering in a bearer by virtue of the bearer's magnitude of the temporal extent between the starting and ending point.
imported from: pato.owl
has_alternative_id: PATO:0000081
has exact synonym: period
has_obo_namespace: quality
has_related_synonym: time
id: PATO:0001309
in subset: attribute slim
in subset: hpo slim

慢性
type: Class
subclass of: 时限
definition: A duration quality of a process inhering in a bearer by virtue of the bearer's having slow progressive course of indefinite duration.
imported from: pato.owl
is opposite of: 急性
has_obo_namespace: quality
id: PATO:0001863
in subset: hpo slim
in subset: mpath slim
in subset: value slim

物理的过程特性
type: Class
subclass of: 过程特性
imported from: pato.owl
created by: george
creation date: 2009-06-05T09:16:46Z
has_obo_namespace: quality
id: PATO:0002062
in subset: attribute slim

亚急性
type: Class
subclass of: 时限
definition: A quality of a single process inhering in a bearer by virtue of the bearer's having an onset and time course between acute and chronic.
imported from: pato.owl
created by: george
creation date: 2009-10-05T11:31:35Z
has_obo_namespace: quality
id: PATO:0002091
in subset: hpo slim
in subset: mpath slim
in subset: value slim

疾病
type: Class
subclass of: 性质

example to be eventually removed
type: NamedIndividual
type: curation status specification

metadata complete
type: Thing
type: NamedIndividual
type: curation status specification
definition: Class has all its metadata, but is either not guaranteed to be in its final location in the asserted IS_A hierarchy or refers to another class that is not complete.

organizational term
type: Thing
type: NamedIndividual
type: curation status specification
definition: term created to ease viewing/sort terms for development purpose, and will not be included in a release
term editor: PERSON:Alan Ruttenberg

ready for release
type: Thing
type: NamedIndividual
type: curation status specification
has curation status: pending final vetting
definition: Class has undergone final review, is ready for use, and will be included in the next release. Any class lacking "ready_for_release" should be considered likely to change place in hierarchy, have its definition refined, or be obsoleted in the next release. Those classes deemed "ready_for_release" will also derived from a chain of ancestor classes that are also "ready_for_release."

metadata incomplete
type: Thing
type: NamedIndividual
type: curation status specification
definition: Class is being worked on; however, the metadata (including definition) are not complete or sufficiently clear to the branch editors.

uncurated
type: Thing
type: NamedIndividual
type: curation status specification
definition: Nothing done yet beyond assigning a unique class ID and proposing a preferred term.

pending final vetting
type: Thing
type: NamedIndividual
type: curation status specification
definition: All definitions, placement in the asserted IS_A hierarchy and required minimal metadata are complete. The class is awaiting a final review by someone other than the term editor.

to be replaced with external ontology term
type: NamedIndividual
type: curation status specification
definition: Terms with this status should eventually replaced with a term from another ontology.
term editor: Alan Ruttenberg
definition source: group:OBI

requires discussion
type: NamedIndividual
type: curation status specification
definition: A term that is metadata complete, has been reviewed, and problems have been identified that require discussion before release. Such a term requires editor note(s) to identify the outstanding issues.
term editor: Alan Ruttenberg
definition source: group:OBI

axiom holds for all times
type: NamedIndividual
definition: ## Elucidation This is used when the statement/axiom is assumed to hold true 'eternally' ## How to interpret (informal) First the "atemporal" FOL is derived from the OWL using the standard interpretation. This axiom is temporalized by embedding the axiom within a for-all-times quantified sentence. The t argument is added to all instantiation predicates and predicates that use this relation. ## Example Class: nucleus SubClassOf: part_of some cell forall t : forall n : instance_of(n,Nucleus,t) implies exists c : instance_of(c,Cell,t) part_of(n,c,t) ## Notes This interpretation is *not* the same as an at-all-times relation

obi.owl
type: NamedIndividual
default language: en
OBO foundry unique label: Ontology for Biomedical Investigations
Contributor: Advisors for this project come from the IFOMIS group, Saarbruecken and from the Co-ODE group in Manchester
creator: Alan Ruttenberg
creator: Allyson Lister
creator: Barry Smith
creator: Bill Bug
creator: Bjoern Peters
creator: Carlo Torniai
creator: Chris Mungall
creator: Chris Stoeckert
creator: Chris Taylor
creator: Christian Bolling
creator: Cristian Cocos
creator: Daniel Rubin
creator: Daniel Schober
creator: Dawn Field
creator: Dirk Derom
creator: Elisabetta Manduchi
creator: Eric Deutsch
creator: Frank Gibson
creator: Gilberto Fragoso
creator: Helen C. Causton
creator: Helen Parkinson
creator: Holger Stenzhorn
creator: James A. Overton
creator: James Malone
creator: Jay Greenbaum
creator: Jeffrey Grethe
creator: Jennifer Fostel
creator: Jessica Turner
creator: Jie Zheng
creator: Joe White
creator: John Westbrook
creator: Kevin Clancy
creator: Larisa Soldatova
creator: Lawrence Hunter
creator: Liju Fan
creator: Luisa Montecchi
creator: Matthew Brush
creator: Matthew Pocock
creator: Melanie Courtot
creator: Melissa Haendel
creator: Mervi Heiskanen
creator: Monnie McGee
creator: Norman Morrison
creator: Philip Lord
creator: Philippe Rocca-Serra
creator: Pierre Grenon
creator: Richard Bruskiewich
creator: Richard Scheuermann
creator: Robert Stevens
creator: Ryan R. Brinkman
creator: Stefan Wiemann
creator: Susanna-Assunta Sansone
creator: Tanya Gray
creator: Tina Hernandez-Boussard
creator: Trish Whetzel
creator: Yongqun He
date: 2009-07-31
description: The Ontology for Biomedical Investigations (OBI) is build in a collaborative, international effort and will serve as a resource for annotating biomedical investigations, including the study design, protocols and instrumentation used, the data generated and the types of analysis performed on the data. This ontology arose from the Functional Genomics Investigation Ontology (FuGO) and will contain both terms that are common to all biomedical investigations, including functional genomics investigations and those that are more domain specific.
Format: OWL-DL
subject: An ontology for the annotation of biomedical and functional genomics experiments.
license: http://creativecommons.org/licenses/by/4.0/
comment: Please cite the OBI consortium http://purl.obolibrary.org/obo/obi where traditional citation is called for. However it is adequate that individual terms be attributed simply by use of the identifying PURL for the term, in projects that refer to them.
version info: 2018-08-27

fma.owl
date: 24:07:2008 15:29
default-namespace: fma
has_obo_format_version: 1.2
comment: this is an ALPHA version of the FMA2.0 in obo. Conversion based on http://www.bioontology.org/wiki/index.php/FMAInOwl

pato.owl
date: 07:02:2018 10:27
default-namespace: quality
has_obo_format_version: 1.2
saved-by: segerdel
auto-generated-by: OBO-Edit 2.3.1

OBO Relations Ontology
description: The OBO Relations Ontology (RO) is a collection of OWL relations (ObjectProperties) intended for use across a wide variety of biological ontologies.
comment: Includes Ontology(OntologyID(Anonymous-21)) [Axioms: 26 Logical Axioms: 0]
Source: ro
comment: Includes Ontology(OntologyID(Anonymous-21)) [Axioms: 32 Logical Axioms: 0]