<?xml version="1.0"?>
<rdf:RDF xmlns="http://purl.obolibrary.org/obo/gecko/ihcc-gecko.owl#"
xml:base="http://purl.obolibrary.org/obo/gecko/ihcc-gecko.owl"
xmlns:dc="http://purl.org/dc/elements/1.1/"
xmlns:obo="http://purl.obolibrary.org/obo/"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:xml="http://www.w3.org/XML/1998/namespace"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:terms="http://purl.org/dc/terms/"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/gecko/ihcc-gecko.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/gecko/releases/2021-01-19/views/ihcc-gecko.owl"/>
<dc:title rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Genomics Cohorts Knowledge Ontology (IHCC View)</dc:title>
<terms:license rdf:resource="https://creativecommons.org/licenses/by/4.0/"/>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The GECKO is maintained by the CINECA project, https://www.cineca-project.eu, and standardises attributes commonly used for genomics cohort description as well as individual-level data items. A series of tools is being developed to enable automated generation of harmonised data files based on a JSON schema mapping file. For more information please contact info@cineca-project.eu</rdfs:comment>
</owl:Ontology>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Annotation properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/IAO_0000112 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000112">
<rdfs:label>example of usage</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000115 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000115">
<rdfs:label>definition</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000118 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000118">
<rdfs:label>alternative term</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000119 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000119">
<rdfs:label>definition source</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#hasAlternativeId -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasAlternativeId">
<rdfs:label>has_alternative_id</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym">
<rdfs:label>has_broad_synonym</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#hasExactSynonym -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym">
<rdfs:label>has_exact_synonym</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym">
<rdfs:label>has_narrow_synonym</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym">
<rdfs:label>has_related_synonym</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.w3.org/2000/01/rdf-schema#comment -->
<owl:AnnotationProperty rdf:about="http://www.w3.org/2000/01/rdf-schema#comment">
<rdfs:label>comment</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.w3.org/2000/01/rdf-schema#seeAlso -->
<owl:AnnotationProperty rdf:about="http://www.w3.org/2000/01/rdf-schema#seeAlso">
<rdfs:label>see also</rdfs:label>
</owl:AnnotationProperty>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Classes
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/CMO_0000000 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/CMO_0000000">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000056"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">physiological measurements</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/CMO_0000001 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/CMO_0000001">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CMO_0000000"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">circulation and respiration</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/CMO_0000003 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/CMO_0000003">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CMO_0000001"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">blood pressure</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/CMO_0000012 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/CMO_0000012">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CMO_0000021"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">weight</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/CMO_0000021 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/CMO_0000021">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CMO_0000000"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">anthropometry</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/CMO_0000106 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/CMO_0000106">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CMO_0000021"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">height</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/CMO_0000294 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/CMO_0000294">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CMO_0000001"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">heart rate (HR)</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/EUPATH_0000147 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/EUPATH_0000147">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000116"/>
<obo:IAO_0000115>An information content entity indicating the cause of death for a participant in the study.</obo:IAO_0000115>
<obo:IAO_0000119>Penn Group</obo:IAO_0000119>
<oboInOwl:hasExactSynonym>cause of participant death</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">cause of death</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/EUPATH_0000305 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/EUPATH_0000305">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/EUPATH_0000451"/>
<obo:IAO_0000115 xml:lang="en">a data item that is about an investigation and is the specified output of a data transformation that has only clinical visit data as input</obo:IAO_0000115>
<obo:IAO_0000119 xml:lang="en">EuPathDB</obo:IAO_0000119>
<oboInOwl:hasExactSynonym>aggregated clinical visit information</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">routine clincial visits</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/EUPATH_0000308 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/EUPATH_0000308">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/EUPATH_0000451"/>
<obo:IAO_0000115 xml:lang="en">an information content entity that is about a part of a health care encounter that occurs in a hospital facility</obo:IAO_0000115>
<obo:IAO_0000119 xml:lang="en">EuPathDB</obo:IAO_0000119>
<oboInOwl:hasExactSynonym>hospitalization information</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">hospitalizations</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/EUPATH_0000359 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/EUPATH_0000359">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0001995"/>
<obo:IAO_0000115 xml:lang="en">An information content entity that is about an activity that realizes a social role and is often performed for payment.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>occupation</oboInOwl:hasExactSynonym>
<rdfs:label>occupation</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/EUPATH_0000374 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/EUPATH_0000374">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0001995"/>
<obo:IAO_0000115 xml:lang="en">a categorical value specification that is about a human being and specifies whether that human being is joined to another human being in marriage</obo:IAO_0000115>
<obo:IAO_0000119 xml:lang="en">EuPathDB, BFO's 'relational quality' examples</obo:IAO_0000119>
<oboInOwl:hasExactSynonym>marital status</oboInOwl:hasExactSynonym>
<rdfs:label>marital status</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/EUPATH_0000451 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/EUPATH_0000451">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000056"/>
<obo:IAO_0000115>An information content entity about healthcare that is private or public.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>healthcare information</oboInOwl:hasExactSynonym>
<rdfs:label>healthcare information</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/EUPATH_0010032 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/EUPATH_0010032">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000056"/>
<obo:IAO_0000115>environmental system associated with the dwelling used by humans.</obo:IAO_0000115>
<obo:IAO_0000119>Penn Group</obo:IAO_0000119>
<oboInOwl:hasExactSynonym>environment associated with human dwelling</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">physical environment</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000001 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000001">
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">basic cohort attributes</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000003 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000003">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000001"/>
<obo:IAO_0000115>A directive information entity that specifies the sequence in which a series of events occurred or will occur.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>timeline</oboInOwl:hasExactSynonym>
<rdfs:label>timeline</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000005 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000005">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000001"/>
<obo:IAO_0000115>A data item that is about a population of organisms.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>population data item</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">population data</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000006 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000006">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000005"/>
<obo:IAO_0000115>A population data item that is about the geographical location of a population of organisms.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>population location</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">location</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000008 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000008">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000005"/>
<obo:IAO_0000115>A sample size that is about the count of individual organisms in a population.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>population size</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">num. participants</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000009 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000009">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000001"/>
<obo:IAO_0000115>A quality which inheres in a population of organisms.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>population quality</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">demographic data</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000010 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000010">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000009"/>
<obo:IAO_0000115>A population quality concerning the sex or sexes of the population.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>population sex or sexes</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">sex(es) studied in cohort</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000011 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000011">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000009"/>
<obo:IAO_0000115>A population quality concerning the gender or genders of the population.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>population gender or genders</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">gender(s) studied in cohort</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000012 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000012">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000009"/>
<obo:IAO_0000115>A population quality concerning the age range of a population.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>population age range</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">age range</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000013 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000013">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000001"/>
<obo:IAO_0000115>A planned process that is a part of an investigation in which raw data is collected.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>data collection</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">data collection events</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000014 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000014">
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">biosample</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000019 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000019">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000178"/>
<obo:IAO_0000115>Blood that is collected from an organism which has been fasting for a given amount of time.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>blood collected from fasting subject</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">fasting or non-fasting</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000026 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000026">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000014"/>
<obo:IAO_0000115>A storage process for a biosample collected from an organism.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>biosample storage</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">storage method</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000027 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000027">
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">laboratory measures</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000032 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000032">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000027"/>
<obo:IAO_0000115>An assay that investigates the genome or genomes of an individual organism or population of organisms.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>genomic assay</oboInOwl:hasExactSynonym>
<rdfs:comment>Merged GECKO 'data type' into 'genomics'.</rdfs:comment>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">genomics</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000040 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000040">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000032"/>
<obo:IAO_0000115>A genomic assay that profiles the microorganisms present in a sample.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>microbiome sequencing assay</oboInOwl:hasExactSynonym>
<rdfs:comment>Potential new OBI request</rdfs:comment>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Microbiome markers (rRNA, etc)</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000042 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000042">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000032"/>
<obo:IAO_0000115>A genomic assay that identifies genetic loci and candidate genes correlated with phenotypes.</obo:IAO_0000115>
<obo:IAO_0000119>PMID:27964730</obo:IAO_0000119>
<oboInOwl:hasExactSynonym>eQTL analysis</oboInOwl:hasExactSynonym>
<rdfs:comment>Potential new OBI request</rdfs:comment>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">eQTL (Cis eQTLs and/or Trans eQTLs)</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000044 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000044">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000014"/>
<obo:IAO_0000115>A count of the number of biosamples collected for an investigation.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>biosample size</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">sample size</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000047 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000047">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000014"/>
<obo:IAO_0000115>A material processing which prepares a biosample for investigation.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>biosample processing</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">processing method</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000052 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000052">
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">survey administration</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000055 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000055">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000052"/>
<obo:IAO_0000115>An identifier that is guaranteed to be unique among all identifiers in a particular domain.</obo:IAO_0000115>
<obo:IAO_0000119>Wikipedia:Unique_identifier</obo:IAO_0000119>
<oboInOwl:hasExactSynonym>unique identifier</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">unique identifiers</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000056 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000056">
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">questionnaire/survey data</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000060 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000060">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0001995"/>
<obo:IAO_0000115>An organismal quality inhering in a bearer by virtue of the bearer's preference towards a range of characteristics pertaining to, and differentiating between, masculinity and femininity.</obo:IAO_0000115>
<obo:IAO_0000119>Wikipedia:Gender|PATO:0000047</obo:IAO_0000119>
<oboInOwl:hasExactSynonym>gender</oboInOwl:hasExactSynonym>
<rdfs:label>gender</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000061 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000061">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0001995"/>
<obo:IAO_0000115>An organismal quality inhering in a bearer by virtue of the bearer's identification with a group of other individuals on the basis of presumed similarities such as language or common ancestry.</obo:IAO_0000115>
<obo:IAO_0000119>Wikipedia:Ethnic_group</obo:IAO_0000119>
<oboInOwl:hasExactSynonym>ethnicity</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ethnicity/race</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000063 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000063">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0001995"/>
<obo:IAO_0000115>A geographical location in which an individual was born.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>birthplace location</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">birthplace</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000064 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000064">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0001995"/>
<obo:IAO_0000115>A geographical location in which an individual currently resides.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>residence location</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">residence</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000065 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000065">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0001995"/>
<obo:IAO_0000115>An organismal quality inhering in a bearer by virute of the bearer's highest level of formal education completed.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>education level</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">education</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000066 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000066">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0001995"/>
<obo:IAO_0000115>Information that is about the structure of an individual's family and/or household.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>family and household structure</oboInOwl:hasExactSynonym>
<rdfs:label>family and household structure</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000067 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000067">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000056"/>
<obo:IAO_0000115>A clinical history that is about the lifestyle and behaviors of an individual which may impact health outcomes.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>lifestyle history</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">lifestyle and behaviours</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000068 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000068">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000067"/>
<obo:IAO_0000115>A lifestyle history that is about the tobacco use or exposure of an individual.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>tobacco use history</oboInOwl:hasExactSynonym>
<rdfs:label>tobacco use history</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000069 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000069">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000067"/>
<obo:IAO_0000115>A lifestyle history that is about the alcohol consumption of an individual.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>alcohol use history</oboInOwl:hasExactSynonym>
<rdfs:label>alcohol use history</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000071 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000071">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000067"/>
<obo:IAO_0000115>A lifestyle history that is about the sleep quality and duration of an individual.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>sleep history</oboInOwl:hasExactSynonym>
<rdfs:label>sleep history</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000072 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000072">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000067"/>
<obo:IAO_0000115>A lifestyle history that is about the diet and nutrition of an individual.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>nutritional history</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">dietary history</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000073 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000073">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/EUPATH_0000451"/>
<obo:IAO_0000115>A textual entity that contains contact details for an individual's physician, which may include: name, phone number, address, etc.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>physician contact textual entity</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">physician/practitioner info</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000091 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000091">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000056"/>
<obo:IAO_0000115>A treatment history that is about any non-pharamacological treatments such as surgery or physical therapy.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>non-pharmacological treatment history</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">non-pharmacological interventions</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000092 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000092">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000091"/>
<obo:IAO_0000115>A clinical history that is about surgical operations performed on an individual.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>surgical history</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">surgical interventions</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000093 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000093">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000056"/>
<obo:IAO_0000115>A clinical history that is about the prescription drugs taken by an individual.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>prescription drug history</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">medication</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000094 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000094">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000093"/>
<obo:IAO_0000115>Information that is about the disease treated by a drug prescribed to an individual.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>disease treated by prescription drug</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">associated disease(s)</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000096 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000096">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000093"/>
<obo:IAO_0000115>A biological process that results from a drug stimulus.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>response to medication</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">drug response(s)</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000101 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000101">
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">statistics</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000102 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000102">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000101"/>
<obo:IAO_0000115>A statistic that summarizes a set of federated data.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>summary statistic for federated data</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">summary statistics for additional data from federated sources</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000103 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000103">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000067"/>
<obo:IAO_0000115>A lifestyle history that is about the use of unprescribed and/or non-prescription drugs.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>recreational drug history</oboInOwl:hasExactSynonym>
<rdfs:label>recreational drug history</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000104 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000104">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000067"/>
<obo:IAO_0000115>A lifestyle history that is about the typical physical activity of an individual.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>physical activity history</oboInOwl:hasExactSynonym>
<rdfs:label>physical activity history</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000105 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000105">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000032"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">other</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000112 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000112">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000463"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">other biosample type</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000113 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000113">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000014"/>
<obo:IAO_0000115>An availability textual entity that is about a substance from an organism (a biosample).</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>biosample availability textual entity</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">availability</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000114 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000114">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000116"/>
<obo:IAO_0000115>A clinical history that is about pregnancy, maternity, fertility, menses, and any other reproductive aspect.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>reproductive history</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">reproduction</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000116 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000116">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000056"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">other questionnaire/survey data</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000117 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000117">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000056"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">perception of health and quality of life</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000118 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000118">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000056"/>
<obo:IAO_0000115>A measurement datum of some aspect of human psychology.</obo:IAO_0000115>
<obo:IAO_0000119>EFO:0009095</obo:IAO_0000119>
<oboInOwl:hasExactSynonym>psychological measurement</oboInOwl:hasExactSynonym>
<rdfs:comment>See also EFO:0009095</rdfs:comment>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">cognitive and psychological measurements</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000119 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000119">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000118"/>
<obo:IAO_0000115>A psychological measurement of some aspect of intellectual functions such as memory, problem solving, and comprehension.</obo:IAO_0000115>
<obo:IAO_0000119>Wikipedia:Cognition</obo:IAO_0000119>
<oboInOwl:hasExactSynonym>cognitive measurement</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">cognitive functioning</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000120 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000120">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000118"/>
<obo:IAO_0000115>A psychological measurement of a person's individual sets of behaviours, cognitions, and emotional patterns.</obo:IAO_0000115>
<obo:IAO_0000119>Wikipedia:Personality</obo:IAO_0000119>
<oboInOwl:hasExactSynonym>personality measurement</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">personality</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000121 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000121">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000118"/>
<obo:IAO_0000115>A biological process that results from neurophysiological changes in response to internal and external events.</obo:IAO_0000115>
<obo:IAO_0000119>Wikipedia:Emotion</obo:IAO_0000119>
<oboInOwl:hasExactSynonym>emotion</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">psychological distress and emotions</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000122 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000122">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000067"/>
<obo:IAO_0000115>A lifestyle history that is about oral health and hygiene.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>oral health history</oboInOwl:hasExactSynonym>
<rdfs:label>oral health history</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000123 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000123">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000091"/>
<obo:IAO_0000115>A non-pharmacological treatment history that is about psychological treatments such as counselling.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>psychological treatment history</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">psychological interventions</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000124 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000124">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000091"/>
<obo:IAO_0000115>A non-pharmacological treatment history that is about use of radiology for treatment of disease, disorder, or symptom.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>radiological treatment history</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">radiological interventions</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000125 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000125">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000091"/>
<obo:IAO_0000115>A non-pharmacological treatment history that is about physical therapy treatments such as physical rehabilitation.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>physical therapy history</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">physical therapy interventions</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000126 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000126">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000117"/>
<obo:IAO_0000115>A psychological measurement of an individual's subjective perception of health.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>perception of health measurement</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">perception of health</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000127 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000127">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000117"/>
<obo:IAO_0000115>A psychological measurement of an individual's perception of their quality of life.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>quality of life measurement</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">quality of life</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000128 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000128">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000117"/>
<obo:IAO_0000115>Information that is about an individual's limitations in activities that involve caring for an moving the body.</obo:IAO_0000115>
<obo:IAO_0000119>Maelstrom:Act_daily_living</obo:IAO_0000119>
<oboInOwl:hasExactSynonym>information on functional limitations</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">functional limitations</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000129 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000129">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000117"/>
<obo:IAO_0000115>Information about an individual's use of assistive devices in performing daily activities.</obo:IAO_0000115>
<obo:IAO_0000119>Maelstrom:Use_devices</obo:IAO_0000119>
<oboInOwl:hasExactSynonym>information on use of assistive devices</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">use of assistive devices</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000130 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000130">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0001995"/>
<obo:IAO_0000115>Information about an individual's association with a religion, denomiation, or sub- or non-denominational religious group.</obo:IAO_0000115>
<obo:IAO_0000119>url:http://archive.stats.govt.nz/methods/classifications-and-standards/classification-related-stats-standards/religious-affiliation/definition.aspx</obo:IAO_0000119>
<oboInOwl:hasExactSynonym>religious affiliation</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">religion</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000131 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000131">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000116"/>
<obo:IAO_0000115>An immaterial entity that encompasses the domain made up of interactions between the individual's physical environment, social processes, and relationships with other individuals and groups.</obo:IAO_0000115>
<obo:IAO_0000119>PMID:10352860</obo:IAO_0000119>
<oboInOwl:hasExactSynonym>human social environment</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">social environment</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000132 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000132">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000116"/>
<obo:IAO_0000115>A clinical history that is about any family history of disease.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>family history of disease</oboInOwl:hasExactSynonym>
<rdfs:label>family history of disease</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000133 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000133">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000091"/>
<obo:IAO_0000115>A non-pharmacological treatment history that is about diagnostic procedures to determine a condition or disease.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>diagnostic procedure history</oboInOwl:hasExactSynonym>
<rdfs:comment>Includes procedures such as colonoscopies, ultrasounds, etc., but excludes laboratory tests.</rdfs:comment>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">diagnostic interventions</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000134 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000134">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000119"/>
<obo:IAO_0000115>A cognitive measurement that is an output (score) from the Alzheimer's Disease Assessment Scale.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>Alzheimer's Disease Assessment Scale score</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ADAS</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000135 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000135">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000119"/>
<obo:IAO_0000115>A cognitive measurement that is an output (score) from the Mini-Mental State Exam.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>Mini-Mental State Exam score</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MMSE</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000136 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000136">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0001995"/>
<obo:IAO_0000115>Information about the language an individual has been exposed to from birth and is their first language.</obo:IAO_0000115>
<obo:IAO_0000119>url:https://en.wikipedia.org/wiki/First_language</obo:IAO_0000119>
<oboInOwl:hasExactSynonym>native language of individual</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">native language</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000137 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000137">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000119"/>
<obo:IAO_0000115>A cognitive measurement that is the output (score) from the Montreal Cognitive Assessment Test (MoCA) for Dementia</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>Montreal Cognitive Assessment Test score</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MoCA</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000138 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000138">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000119"/>
<obo:IAO_0000115>A cognitive measurement that is the output (score) from the CERAD Neurophyschological Battery.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>CERAD Neuropsychological Battery score</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">CERAD Battery</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000139 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000139">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000119"/>
<obo:IAO_0000115>A cognitive measurement that is the output (score) from the Penn Computerized Neurocognitive Battery.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>Penn Computerized Neurocognitive Battery score</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Penn CNB</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000140 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000140">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/MONDO_0000001"/>
<obo:IAO_0000115>A disorder that is present at birth due to genetics or environmental factors during development.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>congenital disorder</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">congenital and genetic disorders</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000141 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000141">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000119"/>
<obo:IAO_0000115>A cognitive measurement that is the output (score) from the Severe Impairment Battery.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>Severe Impairment Battery score</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">SIB</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000142 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000142">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000119"/>
<obo:IAO_0000115>A cognitive measurement that is the output (score) from the Neuropsychiatric Inventory.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>Neuropsychiatric Inventory score</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">NPI</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GECKO_0000143 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000143">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000119"/>
<obo:IAO_0000115>A cognitive measurement that is the output (score) from the Clinical Dementia Rating Scale.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>Clinical Dementia Rating Scale score</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">CDR</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000005 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000005">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000001"/>
<obo:IAO_0000112 xml:lang="en">In the protocol of a ChIP assay the objective specification says to identify protein and DNA interaction.</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A directive information entity that describes an intended process endpoint. When part of a plan specification the concretization is realized in a planned process in which the bearer tries to effect the world so that the process endpoint is achieved.</obo:IAO_0000115>
<obo:IAO_0000118 xml:lang="en">goal specification</obo:IAO_0000118>
<obo:IAO_0000119 xml:lang="en">OBI Plan and Planned Process/Roles Branch</obo:IAO_0000119>
<obo:IAO_0000119 xml:lang="en">OBI_0000217</obo:IAO_0000119>
<oboInOwl:hasExactSynonym>objective specification</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">aims and objectives</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000619 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000619">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000052"/>
<obo:IAO_0000112 xml:lang="en">From Shiba et al. Acta Neuropathol Commun. 2013; 1: 45. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3893467/):
Written informed consent was obtained from the patient’s parents for publication of this Case report and any accompanying images. A copy of the written consent is available for review by the Editor-in chief of this journal.</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A textual entity that documents the consenting process used to enroll patients in a study.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>consent textual entity</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">consent/accessibility</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/MF_0000041 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/MF_0000041">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000116"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">personal beliefs and values</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/MONDO_0000001 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0000001">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000056"/>
<obo:IAO_0000115>A disease is a disposition to undergo pathological processes that exists in an organism because of one or more disorders in that organism.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>condition</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>disease</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>disease or disorder</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>disease or disorder, non-neoplastic</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>diseases</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>diseases and disorders</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>disorder</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>disorders</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>medical condition</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>other disease</oboInOwl:hasExactSynonym>
<rdfs:label>diseases</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/MONDO_0002051 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0002051">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/MONDO_0000001"/>
<obo:IAO_0000115>A disease involving the integumental system.</obo:IAO_0000115>
<oboInOwl:hasAlternativeId>MONDO:0045027</oboInOwl:hasAlternativeId>
<oboInOwl:hasExactSynonym>disease of integumental system</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>disease or disorder of integumental system</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>disorder of integumental system</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>integumental system disease</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>integumental system disease or disorder</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>integumentary disease</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>integumentary system disease</oboInOwl:hasExactSynonym>
<oboInOwl:hasRelatedSynonym>disorder of integument</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym>disorder of integumental system</oboInOwl:hasRelatedSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">skin and subcutaneous tissue diseases</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/MONDO_0002081 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0002081">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/MONDO_0000001"/>
<obo:IAO_0000115>A disease involving the musculoskeletal system.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>disease of musculoskeletal system</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>disease or disorder of musculoskeletal system</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>disorder of musculoskeletal system</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>musculoskeletal disease</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>musculoskeletal system disease</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>musculoskeletal system disease or disorder</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>musculoskeletal system disorder</oboInOwl:hasExactSynonym>
<oboInOwl:hasRelatedSynonym>disorder of musculoskeletal system</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym>musculoskeletal disorder</oboInOwl:hasRelatedSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">musculoskeletal system diseases</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/MONDO_0002118 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0002118">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/MONDO_0000001"/>
<obo:IAO_0000115>A disease involving the renal system.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>disease of renal system</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>disease or disorder of renal system</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>disorder of renal system</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>disorder of the urinary system</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>disorder of urinary system</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>non-neoplastic urinary tract disease</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>renal disease</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>renal system disease</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>renal system disease or disorder</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>urinary system disease</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>urinary tract disease</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>urinary tract disorder</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>urologic disorder</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>urological disorders</oboInOwl:hasExactSynonym>
<oboInOwl:hasRelatedSynonym>disease, urinary tract</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym>disease, urologic</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym>disease, urological</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym>diseases, urinary tract</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym>diseases, urologic</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym>diseases, urological</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym>disorder of renal system</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym>urinary disease</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym>urinary system disorder</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym>urinary tract diseases</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym>urologic disease</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym>urological disease</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym>urological diseases</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym>urological disorder</oboInOwl:hasRelatedSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">urinary system diseases</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/MONDO_0004335 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0004335">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/MONDO_0000001"/>
<obo:IAO_0000115>A disease or disorder that involves the digestive system.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>alimentary system disease</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>digestive disease</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>digestive system disease</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>digestive system disease or disorder</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>digestive system disorder</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>disease of digestive system</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>disease or disorder of digestive system</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>disorder of digestive system</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>gastroenterological system disease</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>gastroenterological system disorder</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>gastroenteropathy</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>gastrointestinal disease</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>gastrointestinal disorder</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>gastrointestinal system disease</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>gastrointestinal system disorder</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>git disease</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>stomach or intestinal disorder</oboInOwl:hasExactSynonym>
<oboInOwl:hasRelatedSynonym>disorder of digestive system</oboInOwl:hasRelatedSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">digestive system diseases</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/MONDO_0004992 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0004992">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/MONDO_0000001"/>
<obo:IAO_0000115>A tumor composed of atypical neoplastic, often pleomorphic cells that invade other tissues. Malignant neoplasms often metastasize to distant anatomic sites and may recur after excision. The most common malignant neoplasms are carcinomas (adenocarcinomas or squamous cell carcinomas), Hodgkin and non-Hodgkin lymphomas, leukemias, melanomas, and sarcomas.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>CA</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>cancer</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>cell type cancer</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>malignancy</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>malignant Growth</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>malignant neoplasm</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>malignant neoplasm (disease)</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>malignant neoplastic disease</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>malignant tumor</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>neoplasm (disease), malignant</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>neoplasm, malignant</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>organ system cancer</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>primary cancer</oboInOwl:hasExactSynonym>
<oboInOwl:hasRelatedSynonym>MT</oboInOwl:hasRelatedSynonym>
<rdfs:label>cancer</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/MONDO_0004995 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0004995">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/MONDO_0000001"/>
<obo:IAO_0000115>A disease involving the cardiovascular system.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>cardiovascular disease</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>cardiovascular disease (CVD)</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>cardiovascular disorder</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>cardiovascular system disease</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>cardiovascular system disease or disorder</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>disease of cardiovascular system</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>disease of subdivision of hemolymphoid system</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>disease or disorder of cardiovascular system</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>disorder of cardiovascular system</oboInOwl:hasExactSynonym>
<oboInOwl:hasRelatedSynonym>circulatory system disease</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym>disorder of cardiovascular system</oboInOwl:hasRelatedSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">cardiovascular diseases</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/MONDO_0005039 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0005039">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/MONDO_0000001"/>
<obo:IAO_0000115>A disease involving the reproductive system.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>disease of reproductive system</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>disease or disorder of reproductive system</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>disorder of reproductive system</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>genital disorders</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>genital system disease</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>reproductive disease</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>reproductive system disease</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>reproductive system disease or disorder</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>reproductive system disorder</oboInOwl:hasExactSynonym>
<oboInOwl:hasRelatedSynonym>disorder of reproductive system</oboInOwl:hasRelatedSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">reproductive system diseases</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/MONDO_0005046 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0005046">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/MONDO_0000001"/>
<obo:IAO_0000115>A disorder resulting from an abnormality in the immune system.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>disease of immune system</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>disease or disorder of immune system</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>disorder of immune system</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>immune disease</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>immune disorder</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>immune dysfunction</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>immune system disease</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>immune system disease or disorder</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>immune system disorder</oboInOwl:hasExactSynonym>
<oboInOwl:hasRelatedSynonym>disorder of immune system</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym>immune disorder, NOS</oboInOwl:hasRelatedSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">immune system diseases</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/MONDO_0005071 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0005071">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/MONDO_0000001"/>
<obo:IAO_0000115>A non-neoplastic or neoplastic disorder that affects the brain, spinal cord, or peripheral nerves.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>disease of nervous system</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>disease or disorder of nervous system</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>disorder of nervous system</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>nervous system disease</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>nervous system disease or disorder</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>nervous system disorder</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>neurologic disease</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>neurologic disorder</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>neurological disease</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>neurological disorder</oboInOwl:hasExactSynonym>
<oboInOwl:hasRelatedSynonym>disorder of nervous system</oboInOwl:hasRelatedSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">nervous system disorders</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/MONDO_0005084 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0005084">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/MONDO_0000001"/>
<obo:IAO_0000115>A disease that has its basis in the disruption of mental process.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>disorder of mental process</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>mental disorder</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>mental or behavioural disorder</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>mental process disease</oboInOwl:hasExactSynonym>
<oboInOwl:hasRelatedSynonym>disorder of mental process</oboInOwl:hasRelatedSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">mental and behaviour disorders</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/MONDO_0005087 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0005087">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/MONDO_0000001"/>
<obo:IAO_0000115>A non-neoplastic or neoplastic disorder that affects the respiratory system. Representative examples include pneumonia, chronic obstructive pulmonary disease, pulmonary failure, lung adenoma, lung carcinoma, and tracheal carcinoma.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>disease of respiratory system</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>disease or disorder of respiratory system</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>disorder of respiratory system</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>respiratory disease</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>respiratory disorder</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>respiratory system disease</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>respiratory system disease or disorder</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>respiratory system disorder</oboInOwl:hasExactSynonym>
<oboInOwl:hasRelatedSynonym>disorder of respiratory system</oboInOwl:hasRelatedSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">respiratory system diseases</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/MONDO_0005151 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0005151">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/MONDO_0000001"/>
<obo:IAO_0000115>A disease involving the endocrine system.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>disease of endocrine system</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>disease or disorder of endocrine system</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>disorder of endocrine system</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>endocrine disease</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>endocrine disorder</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>endocrine system disease</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>endocrine system disease or disorder</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>endocrine system disorder</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>endocrinopathy</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>thyroid or other glandular disorders</oboInOwl:hasExactSynonym>
<oboInOwl:hasRelatedSynonym>disorder of endocrine system</oboInOwl:hasRelatedSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">endocrine system diseases</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/MONDO_0005550 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0005550">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/MONDO_0000001"/>
<obo:IAO_0000115>A disorder resulting from the presence and activity of a microbial, viral, or parasitic agent. It can be transmitted by direct or indirect contact.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>ID</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>clinical infection</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>communicable disease</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>infection</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>infectious</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>infectious disease</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>infectious diseases and manifestations</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>infectious disorder</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>transmissible disease</oboInOwl:hasExactSynonym>
<oboInOwl:hasRelatedSynonym>disease by infectious agent</oboInOwl:hasRelatedSynonym>
<rdfs:comment>Replaces 'infection' in disease hierarchy. OBI imported term infection is moved to pathologic process. This class is a container class for infectious diseases, not the process of infection itself.</rdfs:comment>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">infectious diseases</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/MONDO_0005570 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0005570">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/MONDO_0000001"/>
<obo:IAO_0000115>A disease involving the hematopoietic system.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>blood disease</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>blood disorder</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>blood dyscrasia</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>disease of hematopoietic system</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>disease of the blood and blood-forming organs</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>disease or disorder of hematopoietic system</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>disorder of hematopoietic system</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>hematologic and lymphocytic disorder</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>hematologic disease</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>hematologic disorder</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>hematological disease</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>hematological disorder</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>hematological system disease</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>hematopoietic disease</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>hematopoietic system disease</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>hematopoietic system disease or disorder</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>rare hematologic disease</oboInOwl:hasExactSynonym>
<oboInOwl:hasRelatedSynonym>blood dyscrasia NOS</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym>disorder of hematopoietic system</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym>hematological disorders and malignancies</oboInOwl:hasRelatedSynonym>
<rdfs:comment>placeholder for lymphoid disease</rdfs:comment>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">blood-related disorders</rdfs:label>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://github.com/monarch-initiative/mondo/issues/254</rdfs:seeAlso>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/MONDO_0021178 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0021178">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/MONDO_0000001"/>
<obo:IAO_0000115>Damage inflicted on the body as the direct or indirect result of an external force, with or without disruption of structural continuity.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>injury</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>trauma</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>traumatic injury</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>wound</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">injuries</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/MONDO_0024458 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0024458">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/MONDO_0000001"/>
<obo:IAO_0000115>A disease that involves the visual system.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>disease of visual system</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>disease or disorder of visual system</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>disorder of visual system</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>visual system disease</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>visual system disease or disorder</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>visual system disorder</oboInOwl:hasExactSynonym>
<oboInOwl:hasRelatedSynonym>disorder of visual system</oboInOwl:hasRelatedSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">visual system diseases</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/MONDO_0024623 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0024623">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/MONDO_0000001"/>
<obo:IAO_0000115>Pathological processes of the ear, the nose, and the throat, also known as the ENT diseases.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>ear, nose and throat disorder</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>ear, nose or throat disorder</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>ear/nose/throat disease</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>otolaryngologic disorder</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>otorhinolaryngologic disease</oboInOwl:hasExactSynonym>
<oboInOwl:hasRelatedSynonym>ENT disease</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym>ENT diseases</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym>disease, ENT</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym>disease, otolaryngologic</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym>disease, otolaryngological</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym>disease, otorhinolaryngologic</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym>disease, otorhinolaryngological</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym>diseases, ENT</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym>diseases, otolaryngologic</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym>diseases, otolaryngological</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym>diseases, otorhinolaryngologic</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym>diseases, otorhinolaryngological</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym>otolaryngologic disease</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym>otolaryngologic diseases</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym>otolaryngological disease</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym>otolaryngological diseases</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym>otorhinolaryngological disease</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym>otorhinolaryngological diseases</oboInOwl:hasRelatedSynonym>
<rdfs:comment>Editor note: consider uberon class</rdfs:comment>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">diseases of the ear, nose, and/or throat</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/MONDO_0029000 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0029000">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/MONDO_0000001"/>
<obo:IAO_0000115>A condition or physical state produced by the ingestion, injection, inhalation of or exposure to a deleterious agent.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>poisoning</oboInOwl:hasExactSynonym>
<oboInOwl:hasRelatedSynonym>Poisonings</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym>intoxication</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym>poisoning syndrome</oboInOwl:hasRelatedSynonym>
<rdfs:label>poisoning</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000185 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000185">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000027"/>
<obo:IAO_0000115>An assay that produces a picture of an entity.</obo:IAO_0000115>
<obo:IAO_0000119>OBI branch derived</obo:IAO_0000119>
<oboInOwl:hasExactSynonym>imaging assay</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">imaging</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000435 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000435">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000032"/>
<obo:IAO_0000112>High-throughput genotyping of oncogenic human papilloma viruses with MALDI-TOF mass spectrometry. Clin Chem. 2008 Jan;54(1):86-92. Epub 2007 Nov 2.PMID: 17981923</obo:IAO_0000112>
<obo:IAO_0000115>An assay which generates data about a genotype from a specimen of genomic DNA. A variety of techniques and instruments can be used to produce information about sequence variation at particular genomic positions.</obo:IAO_0000115>
<obo:IAO_0000118>SNP analysis</obo:IAO_0000118>
<obo:IAO_0000118>genotype profiling</obo:IAO_0000118>
<obo:IAO_0000119>OBI Biomaterial</obo:IAO_0000119>
<oboInOwl:hasExactSynonym>genotyping assay</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">DNA/Genotyping</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000537 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000537">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000032"/>
<obo:IAO_0000112>Profiling of copy number variations (CNVs) in healthy individuals from three ethnic groups using a human genome 32 K BAC-clone-based array. PMID:18058796</obo:IAO_0000112>
<obo:IAO_0000115>An assay that determines lost or amplified genomic regions of DNA by comparing genomic DNA originating from tissues from the same or different individuals using specific techniques such as CGH, array CGH, SNP genotyping</obo:IAO_0000115>
<obo:IAO_0000118>CNV analysis</obo:IAO_0000118>
<oboInOwl:hasExactSynonym>copy number variation profiling assay</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Sequence variants (CNV, SNP arrays)</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0001271 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0001271">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000032"/>
<obo:IAO_0000115>An transcription profiling assay that determines an RNA sequence by analyzing the transcibed regions of the genome and or to quantitate transcript abundance.</obo:IAO_0000115>
<obo:IAO_0000118>transcription profiling by high throughput sequencing</obo:IAO_0000118>
<obo:IAO_0000119>EFO:0002770</obo:IAO_0000119>
<oboInOwl:hasExactSynonym>RNA-seq assay</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">RNAseq/gene expression</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0001624 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0001624">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000027"/>
<obo:IAO_0000115>An assay that identifies the organism species in a specimen.</obo:IAO_0000115>
<obo:IAO_0000119>NIAID GSCID-BRC metadata working group</obo:IAO_0000119>
<oboInOwl:hasExactSynonym>organism identification assay</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">microbiology</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002020 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002020">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000032"/>
<obo:IAO_0000115>An assay that identifies epigenetic modifications including histone modifications, open chromatin, and DNA methylation.</obo:IAO_0000115>
<obo:IAO_0000119>Penn group</obo:IAO_0000119>
<oboInOwl:hasExactSynonym>epigenetic modification assay</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Epigenetics</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002117 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002117">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000032"/>
<obo:IAO_0000112>WGS permits comprehensive sequencing of introns and exons, whereas whole exome sequencing (WES) allows deeper sequencing of exonic regions at a lower cost. Due to the large number of genetic variants found in each genome, it is necessary to use filtering approaches to distinguish deleterious from benign variants. WES has been used successfully to identify novel genetic causes of primary immunodeficiency. Complex structural variations and non-Mendelian disorders remain challenges for WGS.</obo:IAO_0000112>
<obo:IAO_0000115>A DNA sequencing assay that intends to provide information about the sequence of an entire genome of an organism.</obo:IAO_0000115>
<obo:IAO_0000118>WGS</obo:IAO_0000118>
<obo:IAO_0000119>PMID:23095910</obo:IAO_0000119>
<obo:IAO_0000119>PMID:25827230</obo:IAO_0000119>
<oboInOwl:hasExactSynonym>whole genome sequencing assay</oboInOwl:hasExactSynonym>
<rdfs:label>WGS</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002118 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002118">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000032"/>
<obo:IAO_0000112>DNA was extracted from the Ficoll pellet of blood taken from congenital asplenia patients. Unamplified, high-molecular weight, RNase-treated genomic DNA (4_6 _g) was used for whole exome sequencing (WES) with the use of Agilent 71 Mb (V4 + UTR) singlesample capture and an Illumina HiSeq 2000. Sequencing was carried out so as to obtain 30_ coverage from 2 _ 100-bp paired-end reads. We used the Annovar tool (25) to annotate the resulting highquality (HQ) variants. In the regions targeted by WES capture (81.5% of the consensus coding genome), the mean numbers of single-nucleotide variants (SNVs) and small insertions/deletions (indels) detected per sample were 84,192 and13,325, respectively. After filtering, a mean of 74,398 (95.3%) high-quality (HQ) SNVs and 9,033 (70.6%) HQ indels were called. A mean of 105 coding HQ SNVs and 32 indels was identified.</obo:IAO_0000112>
<obo:IAO_0000115>A DNA sequencing assay that intends to provide information about the sequence of the protein coding components of a genome (exons).</obo:IAO_0000115>
<obo:IAO_0000118>WES</obo:IAO_0000118>
<obo:IAO_0000119>PMID:25827230</obo:IAO_0000119>
<oboInOwl:hasExactSynonym>exome sequencing assay</oboInOwl:hasExactSynonym>
<rdfs:label>WES</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002415 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002415">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/EUPATH_0010032"/>
<obo:IAO_0000115>A information content entity that indicates the exposure of an individual to carcinogens in the workplace or environment.</obo:IAO_0000115>
<obo:IAO_0000119>OBIB</obo:IAO_0000119>
<oboInOwl:hasExactSynonym>exposure to environmental and workplace carcinogens history</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">exposure to carcinogens</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002623 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002623">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000032"/>
<obo:IAO_0000115>A DNA sequencing assay that intends to provide information on the DNA sequences of multiple genomes (a metagenome) from different organisms present in the same input sample.</obo:IAO_0000115>
<obo:IAO_0000118>WMS</obo:IAO_0000118>
<obo:IAO_0000119>Bjoern Peters</obo:IAO_0000119>
<obo:IAO_0000119>Michelle Giglio</obo:IAO_0000119>
<oboInOwl:hasExactSynonym>whole metagenome sequencing assay</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Metagenomics</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0500000 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0500000">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000001"/>
<obo:IAO_0000112 xml:lang="en">a matched pairs study design describes criteria by which subjects are identified as pairs which then undergo the same protocols, and the data generated is analyzed by comparing the differences between the paired subjects, which constitute the results of the executed study design.</obo:IAO_0000112>
<obo:IAO_0000115>A plan specification comprised of protocols (which may specify how and what kinds of data will be gathered) that are executed as part of an investigation and is realized during a study design execution.</obo:IAO_0000115>
<obo:IAO_0000118 xml:lang="en">experimental design</obo:IAO_0000118>
<oboInOwl:hasExactSynonym>study design</oboInOwl:hasExactSynonym>
<rdfs:label>study design</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0500027 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0500027">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000005"/>
<obo:IAO_0000112 xml:lang="en">PMID: 23979341-The major inclusion criterion was patients in whom severe cerebral embolism was diagnosed at age 75 or younger (more than 9 in the NIHSS score on day 7 after the onset of stroke) .</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">an inclusion criterion (rule) is_a *eligibility criterion* which defines and states a condition which, if met, makes an entity suitable for a given task or participation in a given process. For instance, in a study protocol, inclusion criteria indicate the conditions that prospective subjects MUST meet to be eligible for participation in a study.</obo:IAO_0000115>
<obo:IAO_0000118 xml:lang="en">inclusion condition</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">inclusion rule</obo:IAO_0000118>
<obo:IAO_0000119 xml:lang="en">Adapted from Clinical Research Glossary Version 4.0 CDICS glossary group</obo:IAO_0000119>
<oboInOwl:hasExactSynonym>inclusion criterion</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">criteria for enrollment and recruitment procedures</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OGMS_0000020 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OGMS_0000020">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000116"/>
<obo:IAO_0000115 xml:lang="en">A process experienced by the patient, which can only be experienced by the patient, that is hypothesized to be clinically relevant.</obo:IAO_0000115>
<obo:IAO_0000119>http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf</obo:IAO_0000119>
<oboInOwl:hasExactSynonym>symptom</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">signs and symptoms</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OMRSE_00000501 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OMRSE_00000501">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0001995"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">income and possessions</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PATO_0000011 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0000011">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0001995"/>
<obo:IAO_0000115>A time quality inhering in a bearer by virtue of how long the bearer has existed.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>age</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">age/birthdate</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PATO_0000047 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0000047">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0001995"/>
<obo:IAO_0000115>An organismal quality inhering in a bearer by virtue of the bearer's ability to undergo sexual reproduction in order to differentiate the individuals or types involved.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>biological sex</oboInOwl:hasExactSynonym>
<rdfs:label>biological sex</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PATO_0001995 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0001995">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000056"/>
<obo:IAO_0000115>A quality that inheres in an entire organism or part of an organism.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>organismal quality</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">socio-demographic and economic characteristics</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PDRO_0000024 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PDRO_0000024">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000093"/>
<obo:IAO_0000112>"Prescription for John Smith : Ativan 2mg tablets, take 1 tablet twice daily by mouth as needed if anxious, dispense 60 tablets, renew 12 times. Signed by Dr Hazard. Date: 15/10/29"</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A health care prescription specifying the initiation, modification or cessation of a drug administration.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>drug prescription</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">prescription</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PDRO_0010022 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PDRO_0010022">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000093"/>
<obo:IAO_0000112>'take Aspirin 81 mg oral tablet, 1 tablet once daily by mouth, start today' or the synonymous abbreviated version 'Aspirin 81 mg tablet PO DIE'</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A drug administration description that specifies a drug administration prescribed or reported by an healthcare provider.
It specifies:
- The drug product
- The posology
It may also specify a starting drug administration condition</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>drug administration specification</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">administration</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/STATO_0000093 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/STATO_0000093">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000052"/>
<obo:IAO_0000115 xml:lang="en">Information about a calendar date or timestamp indicating day, month, year and time of an event.</obo:IAO_0000115>
<obo:IAO_0000119 xml:lang="en">STATO</obo:IAO_0000119>
<oboInOwl:hasExactSynonym>date</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">date and time-related information</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0000105 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0000105">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000116"/>
<obo:IAO_0000115>A spatiotemporal region encompassing some part of the life cycle of an organism.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>life cycle stage</oboInOwl:hasExactSynonym>
<oboInOwl:hasNarrowSynonym>developmental stage</oboInOwl:hasNarrowSynonym>
<oboInOwl:hasNarrowSynonym>stage</oboInOwl:hasNarrowSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">life stage/time point</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0000178 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0000178">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000463"/>
<obo:IAO_0000115>A fluid that is composed of blood plasma and erythrocytes.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>blood</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>portion of blood</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>vertebrate blood</oboInOwl:hasExactSynonym>
<oboInOwl:hasRelatedSynonym>whole blood</oboInOwl:hasRelatedSynonym>
<rdfs:label>blood</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0000463 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0000463">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000014"/>
<obo:IAO_0000115>Material anatomical entity in a gaseous, liquid, semisolid or solid state; produced by anatomical structures or derived from inhaled and ingested substances that have been modified by anatomical structures as they pass through the body.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>body fluid or substance</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>body substance</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>organism substance</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>portion of body substance</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>portion of organism substance</oboInOwl:hasExactSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">sample type</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0001088 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0001088">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000463"/>
<obo:IAO_0000115>Excretion that is the output of a kidney</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>urine</oboInOwl:hasExactSynonym>
<rdfs:label>urine</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0001836 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0001836">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000463"/>
<obo:IAO_0000115>A fluid produced in the oral cavity by salivary glands, typically used in predigestion, but also in other functions.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>saliva</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>salivary gland secretion</oboInOwl:hasExactSynonym>
<oboInOwl:hasRelatedSynonym>sailva normalis</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym>saliva atomaris</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym>saliva molecularis</oboInOwl:hasRelatedSynonym>
<rdfs:label>saliva</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0001988 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0001988">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000463"/>
<obo:IAO_0000115>Portion of semisolid bodily waste discharged through the anus[MW,modified]</obo:IAO_0000115>
<oboInOwl:hasBroadSynonym>excreta</oboInOwl:hasBroadSynonym>
<oboInOwl:hasExactSynonym>faeces</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>fecal material</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>fecal matter</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>feces</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>matières fécales@fr</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>merde@fr</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>partie de la merde@fr</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>piece of shit</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>porción de mierda@es</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>portion of excrement</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>portion of faeces</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>portion of fecal material</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>portion of fecal matter</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>portion of feces</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>portionem cacas</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>stool</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>teil der fäkalien@de</oboInOwl:hasExactSynonym>
<oboInOwl:hasNarrowSynonym>cow dung</oboInOwl:hasNarrowSynonym>
<oboInOwl:hasNarrowSynonym>cow pat</oboInOwl:hasNarrowSynonym>
<oboInOwl:hasNarrowSynonym>dung</oboInOwl:hasNarrowSynonym>
<oboInOwl:hasNarrowSynonym>fewmet</oboInOwl:hasNarrowSynonym>
<oboInOwl:hasNarrowSynonym>frass</oboInOwl:hasNarrowSynonym>
<oboInOwl:hasNarrowSynonym>guano</oboInOwl:hasNarrowSynonym>
<oboInOwl:hasNarrowSynonym>portion of dung</oboInOwl:hasNarrowSynonym>
<oboInOwl:hasNarrowSynonym>portion of guano</oboInOwl:hasNarrowSynonym>
<oboInOwl:hasNarrowSynonym>portion of scat</oboInOwl:hasNarrowSynonym>
<oboInOwl:hasNarrowSynonym>scat</oboInOwl:hasNarrowSynonym>
<oboInOwl:hasNarrowSynonym>spraint</oboInOwl:hasNarrowSynonym>
<oboInOwl:hasRelatedSynonym>droppings</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym>excrement</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym>ordure</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym>spoor</oboInOwl:hasRelatedSynonym>
<rdfs:label>stool</rdfs:label>
</owl:Class>
</rdf:RDF>
<!-- Generated by the OWL API (version 4.5.6) https://github.com/owlcs/owlapi -->