Annotation
literal: Orlaith Burke

Annotation
literal: STATO is the statistical methods ontology. It contains concepts and properties related to statistical methods, probability distributions and other concepts related to statistical analysis, including relationships to study designs and plots.

Annotation
literal: Statistical Method, Design of Experiment, Plots, Statistical Model

Annotation
literal: Alejandra Gonzalez-Beltran (http://orcid.org/0000-0003-3499-8262)

Annotation
literal: Thomas Nichols (http://orcid.org/0000-0002-4516-5103)

Annotation
literal: This Ontology is distributed under a Creative Commons Attribution License

Annotation
literal: Philippe Rocca-Serra (http://orcid.org/0000-0001-9853-5668)

Annotation
literal: Nolan Nichols (http://orcid.org/0000-0003-1099-3328)

Annotation
literal: STATO: the statistical methods ontology

Annotation
literal: Chris Mungall (http://orcid.org/0000-0002-6601-2165)

Annotation
literal: 1.2

SubClassOf
object some values from: ObjectProperty
object some values from: ObjectIntersectionOf
  data has value:
    literal: true

SubClassOf
object min cardinality: ObjectProperty
object min cardinality: ObjectIntersectionOf
  object some values from: ObjectProperty
  object some values from: ObjectIntersectionOf
    data has value:
      literal: true

SubClassOf
object some values from: ObjectProperty
object some values from: ObjectIntersectionOf
  data has value:
    literal: true

SubClassOf
object some values from: ObjectProperty
object some values from: ObjectIntersectionOf
  object intersection of: Class
  object intersection of: DataHasValue
    literal: true
  object some values from: ObjectProperty
  object some values from: Class

SubClassOf
annotation:
  literal: This statement can actually be inferred from 'plan specification', because 'independent variable specification' is a subclass of 'is part of' some 'plan specification'
object some values from: ObjectProperty
object some values from: Class

SubClassOf
object some values from: ObjectProperty
object some values from: ObjectIntersectionOf
  data has value:
    literal: true

SubClassOf
object some values from: ObjectProperty
object some values from: ObjectIntersectionOf
  object intersection of: Class
  object intersection of: DataHasValue
    literal: true
  object some values from: ObjectProperty
  object some values from: Class

SubClassOf
object some values from: ObjectProperty
object some values from: ObjectIntersectionOf
  data has value:
    literal: true

SubClassOf
object some values from: ObjectProperty
object some values from: ObjectIntersectionOf
  object intersection of: Class
  object intersection of: DataHasValue
    literal: true
  object some values from: ObjectProperty
  object some values from: Class

SubClassOf
object some values from: ObjectProperty
object some values from: ObjectIntersectionOf
  data has value:
    literal: true

SubClassOf
object some values from: ObjectProperty
object some values from: ObjectIntersectionOf
  object intersection of: Class
  object intersection of: DataHasValue
    literal: true
  object some values from: ObjectProperty
  object some values from: Class

SubClassOf
object some values from: ObjectProperty
object some values from: ObjectIntersectionOf
  data has value:
    literal: true

SubClassOf
object some values from: ObjectProperty
object some values from: ObjectIntersectionOf
  data has value:
    literal: 0

SubClassOf
object some values from: ObjectProperty
object some values from: ObjectIntersectionOf
  data has value:
    literal: true

SubClassOf
object some values from: ObjectProperty
object some values from: ObjectIntersectionOf
  data has value:
    literal: true

SubClassOf
object min cardinality: ObjectProperty
object min cardinality: ObjectIntersectionOf
  object some values from: ObjectProperty
  object some values from: ObjectIntersectionOf
    data has value:
      literal: true

SubClassOf
data some values from: DataProperty
data some values from: DataIntersectionOf
  datatype restriction: Datatype
  datatype restriction: FacetRestriction
    literal: -1
  datatype restriction: FacetRestriction
    literal: 1

SubClassOf
object some values from: ObjectProperty
object some values from: ObjectIntersectionOf
  data has value:
    literal: 2

SubClassOf
object some values from: ObjectProperty
object some values from: ObjectIntersectionOf
  data has value:
    literal: 1

SubClassOf
object some values from: ObjectProperty
object some values from: ObjectIntersectionOf
  data has value:
    literal: 0

SubClassOf
object some values from: ObjectProperty
object some values from: ObjectIntersectionOf
  data has value:
    literal: 0

SubClassOf
object some values from: ObjectProperty
object some values from: ObjectIntersectionOf
  data has value:
    literal: true

SubClassOf
object some values from: ObjectProperty
object some values from: ObjectIntersectionOf
  data has value:
    literal: true

SubClassOf
object intersection of: ObjectSomeValuesFrom
  object exact cardinality: ObjectProperty
  object exact cardinality: ObjectIntersectionOf
    object some values from: ObjectProperty
    object some values from: ObjectIntersectionOf
      data has value:
        literal: true
object intersection of: ObjectExactCardinality

SubClassOf
object exact cardinality: ObjectProperty
object exact cardinality: ObjectIntersectionOf
  object some values from: ObjectProperty
  object some values from: ObjectIntersectionOf
    data has value:
      literal: true

SubClassOf
object some values from: ObjectProperty
object some values from: ObjectIntersectionOf
  object some values from: ObjectProperty
  object some values from: ObjectIntersectionOf
    data has value:
      literal: 0

SubClassOf
object some values from: ObjectProperty
object some values from: ObjectIntersectionOf
  object some values from: ObjectProperty
  object some values from: ObjectIntersectionOf
    data has value:
      literal: 0

SubClassOf
object min cardinality: ObjectProperty
object min cardinality: ObjectIntersectionOf
  object some values from: ObjectProperty
  object some values from: ObjectIntersectionOf
    data has value:
      literal: true

SubClassOf
object min cardinality: ObjectProperty
object min cardinality: ObjectIntersectionOf
  object some values from: ObjectProperty
  object some values from: ObjectIntersectionOf
    data has value:
      literal: true

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000001
literal: entity

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000001
literal: entity

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000002
literal: continuant

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000002
literal: a heart

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000002
literal: a person

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000002
literal: a symphony orchestra

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000002
literal: the color of a tomato

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000002
literal: the disposition of blood to coagulate

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000002
literal: the lawn and atmosphere in front of our building

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000002
literal: the mass of a cloud

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000002
literal: An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts.

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000002
literal: endurant

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000002
literal: continuant

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000003
literal: occurrent

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000003
literal: a surgical operation as processual context for a nosocomical infection

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000003
literal: the life of an organism

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000003
literal: the most interesting part of Van Gogh's life

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000003
literal: the spatiotemporal context occupied by a process of cellular meiosis

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000003
literal: the spatiotemporal region occupied by the development of a cancer tumor

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000003
literal: An entity that has temporal parts and that happens, unfolds or develops through time. Sometimes also called perdurants.

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000003
literal: perdurant

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000003
literal: occurrent

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000004
literal: independent continuant

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000004
literal: a chair

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000004
literal: a heart

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000004
literal: a leg

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000004
literal: a person

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000004
literal: a symphony orchestra

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000004
literal: an organism

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000004
literal: the bottom right portion of a human torso

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000004
literal: the lawn and atmosphere in front of our building

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000004
literal: A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything.

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000004
literal: substantial entity

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000004
literal: independent continuant

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000005
literal: dependent continuant

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000005
literal: A continuant that is either dependent on one or other independent continuant bearers or inheres in or is borne by other entities.

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000005
literal: dependent continuant

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000006
literal: spatial region

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000006
literal: parts of the sum total of all space in the universe

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000006
literal: the sum total of all space in the universe

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000006
literal: A continuant that is neither bearer of quality entities nor inheres in any other entities.

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000006
literal: All instances of continuant [snap:Continuant] are spatial entities, that is, they enter in the relation of (spatial) location with spatial region [snap:SpatialRegion] entities. As a particular case, the exact spatial location of a spatial region [snap:SpatialRegion] is this region itself.

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000006
literal: An instance of spatial region [snap:SpatialRegion] is a part of space. All parts of space are spatial region [snap:SpatialRegion] entities and only spatial region [snap:SpatialRegion] entities are parts of space. Space is the entire extent of the spatial universe, a designated individual, which is thus itself a spatial region [snap:SpatialRegion].

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000006
literal: Space and spatial region [snap:SpatialRegion] entities are entities in their own rights which exist independently of any entities which can be located at them. This view of space is sometimes called "absolutist" or "the container view". In BFO, the class site [snap:Site] allows for a so-called relational view of space, that is to say, a view according to which spatiality is a matter of relative location between entities and not a matter of being tied to space. The bridge between these two views is secured through the fact that while instances of site [snap:Site] are not spatial region [snap:SpatialRegion] entities, they are nevertheless spatial entities.

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000006
literal: spatial region

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000007
literal: process

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000007
literal: the life of an organism

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000007
literal: the process of cell-division

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000007
literal: the process of sleeping

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000007
literal: A processual entity that is a maximally connected spatiotemporal whole and has bona fide beginnings and endings corresponding to real discontinuities.

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000007
literal: process

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000009
literal: two dimensional region

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000009
literal: the surface of a cube-shaped part of space

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000009
literal: the surface of a rectilinear planar figure-shaped part of space

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000009
literal: the surface of a sphere-shaped part of space

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000009
literal: A spatial region with two dimensions.

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000009
literal: two dimensional region

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000016
literal: disposition

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000016
literal: the disposition of a patient with a weakened immune system to contract disease

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000016
literal: the disposition of a vase to brake if dropped

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000016
literal: the disposition of blood to coagulate

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000016
literal: the disposition of metal to conduct electricity

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000016
literal: the disposition of vegetables to decay when not refrigerated

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000016
literal: A realizable entity that essentially causes a specific process or transformation in the object in which it inheres, under specific circumstances and in conjunction with the laws of nature. A general formula for dispositions is: X (object has the disposition D to (transform, initiate a process) R under conditions C.

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000016
literal: disposition

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000017
literal: realizable entity

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000017
literal: the disposition of blood to coagulate

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000017
literal: the disposition of metal to conduct electricity

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000017
literal: the function of the reproductive organs

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000017
literal: the role of being a doctor

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000017
literal: A specifically dependent continuant that inheres in continuant entities and are not exhibited in full at every time in which it inheres in an entity or group of entities. The exhibition or actualization of a realizable entity is a particular manifestation, functioning or process that occurs under certain circumstances.

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000017
literal: If a realizable entity [snap:RealizableEntity] inheres in a continuant [snap:Continuant], this does not imply that it is actually realized.

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000017
literal: realizable entity

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000018
literal: zero dimensional region

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000018
literal: a point

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000018
literal: A spatial region with no dimensions.

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000018
literal: zero dimensional region

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000019
literal: quality

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000019
literal: the ambient temperature of air

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000019
literal: the circumference of a waist

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000019
literal: the color of a tomato

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000019
literal: the mass of a piece of gold

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000019
literal: the shape of a nose

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000019
literal: the weight of a chimpanzee

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000019
literal: A specifically dependent continuant that is exhibited if it inheres in an entity or entities at all (a categorical property).

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000019
literal: quality

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000020
literal: specifically dependent continuant

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000020
literal: the color of a tomato

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000020
literal: the disposition of fish to decay

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000020
literal: the function of the heart in the body: to pump blood, to receive de-oxygenated and oxygenated blood, etc.

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000020
literal: the liquidity of blood

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000020
literal: the mass of a cloud

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000020
literal: the role of being a doctor

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000020
literal: the smell of mozzarella

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000020
literal: A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same.

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000020
literal: mode

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000020
literal: property

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000020
literal: trope

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000020
literal: specifically dependent continuant

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000023
literal: role

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000023
literal: the role of a biological grandfather as legal guardian in the context of a system of laws

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000023
literal: the role of a chemical compound in an experiment

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000023
literal: the role of a patient relative as defined by a hospital administrative form

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000023
literal: the role of a person as a surgeon

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000023
literal: the role of a student in a university

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000023
literal: the role of a woman as a legal mother in the context of system of laws

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000023
literal: the role of ingested matter in digestion

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000023
literal: A realizable entity the manifestation of which brings about some result or end that is not essential to a continuant in virtue of the kind of thing that it is but that can be served or participated in by that kind of continuant in some kinds of natural, social or institutional contexts.

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000023
literal: role

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000026
literal: one dimensional region

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000026
literal: an edge of a cube-shaped part of space

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000026
literal: the part of space that is a line stretching from one end of absolute space to the other

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000026
literal: A spatial region with one dimension.

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000026
literal: one dimensional region

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000028
literal: three dimensional region

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000028
literal: a cube-shaped part of space

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000028
literal: a sphere-shaped part of space

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000028
literal: A spatial region with three dimensions.

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000028
literal: three dimensional region

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000031
literal: generically dependent continuant

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000031
literal: a certain PDF file that exists in different and in several hard drives

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000031
literal: A continuant that is dependent on one or other independent continuant bearers. For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time.

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000031
literal: generically dependent continuant

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000034
literal: function

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000034
literal: the digestive function of the stomach to nutriate the body

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000034
literal: the function of a birth canal to enable transport

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000034
literal: the function of a computer program to compute mathematical equations

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000034
literal: the function of a hammer to drive in nails

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000034
literal: the function of a judge in a court of law

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000034
literal: the function of an automobile to provide transportation

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000034
literal: the function of reproduction in the transmission of genetic material

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000034
literal: the function of the heart in the body: to pump blood, to receive de-oxygenated and oxygenated blood, etc.

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000034
literal: A realizable entity the manifestation of which is an essentially end-directed activity of a continuant entity in virtue of that continuant entity being a specific kind of entity in the kind or kinds of contexts that it is made for.

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000034
literal: function

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000040
literal: material entity

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000040
literal: An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time.

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000040
literal: Examples: collection of random bacteria, a chair, dorsal surface of the body

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000040
literal: Material entity [snap:MaterialEntity] subsumes object [snap:Object], fiat object part [snap:FiatObjectPart], and object aggregate [snap:ObjectAggregate], which assume a three level theory of granularity, which is inadequate for some domains, such as biology.

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000040
literal: material entity

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000050
literal: is part of

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000050
literal: There is controversy about this relation intended to represent the relation between some arbitrary physical thing that is used as a represention/proxy/pointer to something else

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000050
literal: part of

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000050
literal: part_of

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000050
literal: is part of

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000051
literal: has part

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000051
literal: has_part

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000051
literal: has part

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000052
literal: inheres in

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000052
literal: inheres_in

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000052
literal: inheres in

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000053
literal: is bearer of

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000053
literal: bearer of

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000053
literal: bearer_of

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000053
literal: is bearer of

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000054
literal: is realized by

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000054
literal: realized by

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000054
literal: realized_by

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000054
literal: is realized by

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000055
literal: realizes

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000055
literal: realizes

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000056
literal: participates in

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000056
literal: participates_in

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000056
literal: participates in

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000057
literal: has participant

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000057
literal: has_participant

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000057
literal: has participant

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000058
literal: is concretized as

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000058
literal: is concretized as

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000059
literal: concretizes

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000059
literal: concretizes

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000062
literal: is preceded by

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000062
literal: preceded by

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000062
literal: preceded_by

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000062
literal: is preceded by

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000063
literal: precedes

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000063
literal: precedes

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000070
literal: s depends on

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000070
literal: s_depends_on

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000070
literal: s depends on

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000079
literal: is function of

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000079
literal: function of

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000079
literal: function_of

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000079
literal: is function of

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000081
literal: is role of

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000081
literal: role of

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000081
literal: role_of

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000081
literal: is role of

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000082
literal: is located in

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000082
literal: located in

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000082
literal: located_in

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000082
literal: is located in

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000085
literal: has function

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000085
literal: has_function

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000085
literal: has function

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000086
literal: has quality

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000086
literal: has_quality

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000086
literal: has quality

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000087
literal: has role

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000087
literal: has_role

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/BFO_0000087
literal: has role

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/CARO_0001008
literal: gross anatomical part

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/CARO_0001008
literal: Anatomical structure that is part of a multicellular organism and is at the gross anatomical level, e.g. above the level of a cell. Included are portions of organism substances such as blood, multi-cell-part structures such as axon tracts, acellular anatomical structures such as hair, and organism subdivisions such as head. Excluded is the whole organism and more granular parts of the organism, such as atoms, molecules, macromolecular complexes and cells.

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/CARO_0001008
literal: gross anatomical part

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/CHEBI_16670
literal: peptide

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/CHEBI_16670
literal: Amide derived from two or more amino carboxylic acid molecules (the same or different) by formation of a covalent bond from the carbonyl carbon of one to the nitrogen atom of another with formal loss of water. The term is usually applied to structures formed from alpha-amino acids, but it includes those derived from any amino carboxylic acid. X = OH, OR, NH2, NHR, etc.

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/CHEBI_16670
literal: peptide

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/CHEBI_16991
literal: deoxyribonucleic acid

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/CHEBI_16991
literal: High molecular weight, linear polymers, composed of nucleotides containing deoxyribose and linked by phosphodiester bonds; DNA contain the genetic information of organisms.

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/CHEBI_16991
literal: deoxyribonucleic acid

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/CHEBI_23367
literal: molecular entity

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/CHEBI_23367
literal: Any constitutionally or isotopically distinct atom, molecule, ion, ion pair, radical, radical ion, complex, conformer etc., identifiable as a separately distinguishable entity.

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/CHEBI_23367
literal: We are assuming that every molecular entity has to be completely connected by chemical bonds. This excludes protein complexes, which are comprised of minimally two separate molecular entities. We will follow up with Chebi to ensure this is their understanding as well

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/CHEBI_23367
literal: molecular entity

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/CHEBI_33250
literal: atom

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/CHEBI_33250
literal: A chemical entity constituting the smallest component of an element having the chemical properties of the element.

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/CHEBI_33250
literal: atom

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/CHEBI_33696
literal: nucleic acid

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/CHEBI_33696
literal: A macromolecule made up of nucleotide units and hydrolysable into certain pyrimidine or purine bases (usually adenine, cytosine, guanine, thymine, uracil), D-ribose or 2-deoxy-D-ribose and phosphoric acid.

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/CHEBI_33696
literal: nucleic acid

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/CHEBI_33697
literal: ribonucleic acid

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/CHEBI_33697
literal: High molecular weight, linear polymers, composed of nucleotides containing ribose and linked by phosphodiester bonds; RNA is central to the synthesis of proteins.

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/CHEBI_33697
literal: ribonucleic acid

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/CHEBI_33839
literal: macromolecule

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/CHEBI_33839
literal: A macromolecule is a molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass.

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/CHEBI_33839
literal: polymer

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/CHEBI_33839
literal: macromolecule

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/CL_0000000
literal: cell

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/CL_0000000
literal: PMID:18089833.Cancer Res. 2007 Dec 15;67(24):12018-25. "...Epithelial cells were harvested from histologically confirmed adenocarcinomas .."

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/CL_0000000
literal: A material entity of anatomical origin (part of or deriving from an organism) that has as its parts a maximally connected cell compartment surrounded by a plasma membrane.

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/CL_0000000
literal: cell

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/CL_0000010
literal: cultured cell

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/CL_0000010
literal: A cell in vitro that is or has been maintained or propagated as part of a cell culture.

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/CL_0000010
literal: cultured cell

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/CL_0000578
literal: experimentally modified cell in vitro

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/CL_0000578
literal: A cell in vitro that has undergone physical changes as a consequence of a deliberate and specific experimental procedure.

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/CL_0000578
literal: experimentally modified cell in vitro

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/GO_0003674
literal: molecular_function

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/GO_0003674
literal: Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions.

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/GO_0003674
literal: molecular_function

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/GO_0003824
literal: catalytic activity

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/GO_0003824
literal: Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/GO_0003824
literal: catalytic activity

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/GO_0008150
literal: biological_process

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/GO_0008150
literal: Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/GO_0008150
literal: biological_process

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/GO_0010467
literal: gene expression

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/GO_0010467
literal: The process in which a gene's sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form.

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/GO_0010467
literal: gene expression

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/GO_0043234
literal: protein complex

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/GO_0043234
literal: A ribosome is a protein complex

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/GO_0043234
literal: Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or other small molecules.

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/GO_0043234
literal: protein complex

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/IAO_0000001
literal: conditional specification

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/IAO_0000001
literal: a directive information entity that specifies what should happen if the trigger condition is fulfilled

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/IAO_0000001
literal: PlanAndPlannedProcess Branch

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/IAO_0000001
literal: OBI branch derived

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/IAO_0000001
literal: OBI_0000349

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/IAO_0000001
literal: conditional specification

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/IAO_0000002
literal: example to be eventually removed

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/IAO_0000002
literal: example to be eventually removed

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/IAO_0000003
literal: measurement unit label

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/IAO_0000003
literal: Examples of measurement unit labels are liters, inches, weight per volume.

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/IAO_0000003
literal: A data item label that denotes a unit of measure.

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/IAO_0000003
literal: 2009-03-16: review of this term done during during the OBI workshop winter 2009 and the current definition was considered acceptable for use in OBI. If there is a need to modify this definition please notify OBI.

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/IAO_0000003
literal: PERSON: Alan Ruttenberg

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/IAO_0000003
literal: PERSON: Melanie Courtot

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/IAO_0000003
literal: measurement unit label

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/IAO_0000005
literal: objective specification

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/IAO_0000005
literal: a directive information entity that describes an intended process endpoint.

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/IAO_0000005
literal: Answers the question, why did you do this experiment?

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/IAO_0000005
literal: PERSON: Alan Ruttenberg

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/IAO_0000005
literal: PERSON: Barry Smith

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/IAO_0000005
literal: PERSON: Bjoern Peters

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/IAO_0000005
literal: PERSON: Jennifer Fostel

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/IAO_0000005
literal: OBI Plan and Planned Process/Roles Branch

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/IAO_0000005
literal: OBI_0000217

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/IAO_0000005
literal: objective specification

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/IAO_0000007
literal: action specification

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/IAO_0000007
literal: Pour the contents of flask 1 into flask 2

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/IAO_0000007
literal: a directive information entity that describes an action the bearer will take

ObjectIntersectionOf
object some values from: ObjectProperty
object some values from: ObjectIntersectionOf
  object some values from: ObjectProperty
  object some values from: ObjectIntersectionOf
    data some values from: DataProperty
    data some values from: DatatypeRestriction
      facet restriction:
        literal: 5