---
title: "Template pmd file for python"
author: "Yingqi Jing"
date:
header-includes:
- \usepackage{textcomp}
- \renewcommand{\thefigure}{S\arabic{figure}}
- \renewcommand{\thetable}{S\arabic{table}}
- \renewcommand{\thesection}{S\arabic{section}}
- \renewcommand{\thesubsection}{S\arabic{section}.\arabic{subsection}}
- \usepackage{tocloft}
- \settowidth{\cftsecnumwidth}{S10x}
output:
pdf_document:
fig_crop: true
fig_caption: true
latex_engine: xelatex
toc: true
toc_depth: 4
number_section: true
pandoc_args: ["--variable=lof","--variable=lot","--bibliography=/Users/jakejing/switchdrive/bib/references.bib", "--csl=/Users/jakejing/switchdrive/bib/unified-style-linguistics.csl"]
---
\clearpage

```{python, echo = False, include=False}
from mpl_toolkits.mplot3d import Axes3D
import numpy as np
import matplotlib.pyplot as plt
from matplotlib import cm
from matplotlib.ticker import LinearLocator, FormatStrFormatter
```

Introduction
===========

This an example of a script that can be published using `Pweave`(http://mpastell.com/pweave). The script can be executed.

Data and Methods
============

```{python, caption = "An example 3D plot"}
fig = plt.figure()
ax = fig.gca(projection='3d')
X = np.arange(-5, 5, 0.25)
Y = np.arange(-5, 5, 0.25)
X, Y = np.meshgrid(X, Y)
Z = np.sin(np.sqrt(X**2 + Y**2))
surf = ax.plot_surface(X, Y, Z, cmap=cm.coolwarm,
        linewidth=0, antialiased=False)
fig.colorbar(surf, shrink=0.5, aspect=5)
plt.show()
```

```{python, name = "for loop"}
for i in range(10):
    print(i)
```

Results
=========

Discussions
==========