### A Pluto.jl notebook ###
# v0.19.40

using Markdown
using InteractiveUtils

# ╔═╡ 16eab80b-325b-43bd-8bda-6b9ed27513a8
begin
	using IndividualDisplacements, DataFrames, CairoMakie, OceanStateEstimation, NetCDF

        p0=joinpath(dirname(pathof(IndividualDisplacements)),"..","examples")
        f0=joinpath(p0,"worldwide","OCCA_FlowFields.jl")
        include(f0)

	"Done with loading packages"
end

# ╔═╡ 68c92218-40d3-11ec-0397-1747ac61c311
md"""# Three Dimensional Ocean Circulation

Advect particles with climatological mean flow in three dimensions starting from a selected depth level (e.g. `k=10` for 95 m) and region using a near-global ocean state estimate ([OCCA](https://doi.org/10.1175/2009JPO4043.1) which is here repeated for two years. For additional documentation e.g. see : [1](https://JuliaClimate.github.io/MeshArrays.jl/dev/), [2](https://JuliaClimate.github.io/IndividualDisplacements.jl/dev/), [3](https://docs.juliadiffeq.org/latest/solvers/ode_solve.html), [4](https://en.wikipedia.org/wiki/Displacement_(vector))

"""
#![Three dimensional simulation](https://user-images.githubusercontent.com/20276764/94491485-595ee900-01b6-11eb-95e6-c2cacb812f46.png)

# ╔═╡ 44346351-f249-4376-b002-8147755ed489
md"""## Initialize Data Structures"""

# ╔═╡ 66c95828-227c-4db5-a6f1-3e3004a99785
begin
	𝑃,𝐷=OCCA_FlowFields.setup(nmax=5)
	"Done with FlowFields"
end

# ╔═╡ c21d725b-7adf-4918-bddd-39f225ea9858
begin
	nf=100; lo=(-160.0,-150.0); la=(30.0,40.0); level=2.5;
	df=OCCA_FlowFields.initial_positions(𝐷.Γ, nf, lo, la, level)
	"Done with initial positions"
end

# ╔═╡ f199f321-976a-4ccd-a003-140211aa67fe
begin	
	𝐼=Individuals(𝑃,df.x,df.y,df.z,df.f,
		(🔴=OCCA_FlowFields.custom🔴,🔧=OCCA_FlowFields.custom🔧, 𝐷=𝐷))
	"Done with Individuals"
end

# ╔═╡ 00464caa-fab2-4fd2-b39b-177e505d6d89
md"""## Compute Displacements"""

# ╔═╡ 938fdaa8-357d-477e-8fa2-e6da53806242
begin
	𝑇=(0.0,10*86400.0)
	∫!(𝐼,𝑇)
end

# ╔═╡ 09d31a7b-f411-429f-b42b-4c5cd0e5a420
md"""## Visualize Displacements"""

# ╔═╡ 8e371f54-d7f7-4f59-a2e1-9f673486f1fa
plot(𝐼)



# ╔═╡ a6f4b5a0-7818-41a6-a4e5-30d80a727625
"""
    plot(𝐼::Individuals)

Plot the initial and final positions as scatter plot in `lon,lat` or `x,y` plane.
"""
function plot(𝐼::Individuals)
	🔴_by_t = DataFrames.groupby(𝐼.🔴, :t)
	
	set_theme!(theme_light())
	fig=Figure(resolution = (900, 600))
	try
		a = Axis(fig[1, 1],xlabel="longitude",ylabel="latitude")		
		scatter!(a,🔴_by_t[1].lon,🔴_by_t[1].lat,color=:green2)
		scatter!(a,🔴_by_t[end].lon,🔴_by_t[end].lat,color=:red)
	catch
		a = Axis(fig[1, 1],xlabel="longitude",ylabel="latitude")		
		scatter!(a,🔴_by_t[1].x,🔴_by_t[1].y,color=:green2)
		scatter!(a,🔴_by_t[end].x,🔴_by_t[end].y,color=:red)
    end
    return fig
end

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version = "3.5.0+0"
"""

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