### A Pluto.jl notebook ###
# v0.19.40

using Markdown
using InteractiveUtils

# ╔═╡ 7306f20f-9da1-4419-9222-1704fd296ee8
begin
	import ClimateBase, NCDatasets, ClimateTools, NetCDF
	using Downloads, Dates, PlutoUI, Pkg
	"Done with loading packages"
end

# ╔═╡ 15f947af-0485-433c-a424-ba0c0a5f376a
md"""# NetCDF files in Julia

The examples below focus on reading NetCDF datasets using different packages. 

- [NetCDF.jl](https://juliageo.org/NetCDF.jl/dev/) High-level (MATLAB-like), low-level (C-like) and array-based access to NetCDF files. 
- [NCDataSets.jl](https://alexander-barth.github.io/NCDatasets.jl/latest/) : loading/writing NetCDF data, as well as doing basic numerics with them.
- [ClimateBase.jl](https://juliaclimate.github.io/ClimateBase.jl/dev/) provides tools to analyze and manipulate climate (spatiotemporal) data.
- [ClimateTools.jl](https://github.com/JuliaClimate/ClimateTools.jl) is a collection of commonly-used tools in Climate science. 
"""

# ╔═╡ e112e6e8-50b8-496e-b4ea-8c37a288e4a0
TableOfContents()

# ╔═╡ d9874aec-7c7f-4818-81a8-a5fd520159d5
md"""## NCDataSets.jl

[Docs here](https://github.com/Alexander-Barth/NCDatasets.jl#readme)
"""

# ╔═╡ 444ffabf-a52a-40c2-bf88-196f752afee9
md"""## NetCDF.jl

[Docs here](https://github.com/JuliaGeo/NetCDF.jl#readme)
"""

# ╔═╡ e39f0208-c7a1-44fc-b4b9-07f83a86e8d8
md"""## ClimateBase.jl

[Docs here](https://github.com/JuliaClimate/ClimateBase.jl#readme)
"""

# ╔═╡ 0a92c84f-bc1c-4624-ada3-d4202e9f37fa
md"""## ClimateTools.jl

[Docs here](https://github.com/JuliaClimate/ClimateTools.jl#readme)
"""

# ╔═╡ af6450d9-d92a-4331-853f-cd19ff72abd2
begin
		url_large_file="http://esgf-data1.diasjp.net/thredds/fileServer/esg_dataroot/cmip5/output1/MIROC/MIROC5/piControl/day/atmos/day/r1i1p1/v20161012/tas/tas_day_MIROC5_piControl_r1i1p1_20000101-20091231.nc"
	md"""## Download Test File
	
	For extended and performance testing, download the large file ([this url](url_large_file)).
	"""
end

# ╔═╡ 9f0a3ab4-9d79-11ec-33e2-eb9616058d43
begin	
	url="https://github.com/JuliaClimate/ClimateTools.jl/raw/master/test/data/sresa1b_ncar_ccsm3-example.nc"
	fil=joinpath(tempdir(),"sresa1b_ncar_ccsm3-example.nc")
	
	!isfile(fil) ? Downloads.download(url,fil) : nothing
	"File currently used : $(fil)"

	#alternative, bigger, file:
	
	#url="http://esgf-data1.diasjp.net/thredds/fileServer/esg_dataroot/cmip5/output1/MIROC/MIROC5/piControl/day/atmos/day/r1i1p1/v20161012/tas/tas_day_MIROC5_piControl_r1i1p1_20000101-20091231.nc"
	#fil=joinpath(tempdir(),"tas_day_MIROC5_piControl_r1i1p1_20000101-20091231.nc")

end

# ╔═╡ 6c52f938-86db-496c-a1c2-ffdd7836f533
begin
	ds=NCDatasets.Dataset(fil)
	tas_NCD = ds["tas"]
end

# ╔═╡ 11fd1491-64b9-4da0-b7ed-7850825779ea
begin
	tas_NC1 = NetCDF.open(fil, "tas")
	tas_NC2 = tas_NC1[:,:]
	tas_NC3 = NetCDF.ncread(fil, "tas")
	NetCDF.ncinfo(fil)
end

# ╔═╡ 88714902-cf5f-4cd7-adb3-443dd6d48c35
begin
	#Tutorial example:
	lats = -90:5:90
	lons = 0:10:359
	t = Date(2000, 3, 15):Month(1):Date(2020, 3, 15)
	dimensions = (ClimateBase.Lon(lons), ClimateBase.Lat(lats), ClimateBase.Ti(t))
	data = rand(36, 37, 241) # same size as `dimensions`
	A = ClimateBase.ClimArray(data, dimensions)

	#Reading from file:
	tas_CB = ClimateBase.ncread(fil,"tas")
end


# ╔═╡ bd831162-b479-4148-9031-de6529f4bf89
begin
	C=ClimateTools.load(fil,"tas")
	Csub =  ClimateTools.temporalsubset(C, (2000,05,01,12), (2000,06,01,12))
	poly=[NaN -90.0 0.0 0.0 -90.0 -90.0 ; NaN -90.0 -90.0 0.0 0.0 -90.0]
	ClimateTools.spatialsubset(C,poly)
end

# ╔═╡ d164f293-b571-4218-8411-bf01f52e7a20
md"""## Packages"""

# ╔═╡ 2e82a902-a8ba-43a7-b8af-3b7438d4cd97
Pkg.status()

# ╔═╡ 00000000-0000-0000-0000-000000000001
PLUTO_PROJECT_TOML_CONTENTS = """
[deps]
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Dates = "ade2ca70-3891-5945-98fb-dc099432e06a"
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version = "1.6.1"

[[deps.XML2_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"]
git-tree-sha1 = "532e22cf7be8462035d092ff21fada7527e2c488"
uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a"
version = "2.12.6+0"

[[deps.Zlib_jll]]
deps = ["Libdl"]
uuid = "83775a58-1f1d-513f-b197-d71354ab007a"
version = "1.2.13+1"

[[deps.Zstd_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "e678132f07ddb5bfa46857f0d7620fb9be675d3b"
uuid = "3161d3a3-bdf6-5164-811a-617609db77b4"
version = "1.5.6+0"

[[deps.libaec_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "46bf7be2917b59b761247be3f317ddf75e50e997"
uuid = "477f73a3-ac25-53e9-8cc3-50b2fa2566f0"
version = "1.1.2+0"

[[deps.libblastrampoline_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "8e850b90-86db-534c-a0d3-1478176c7d93"
version = "5.8.0+1"

[[deps.libevent_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "OpenSSL_jll"]
git-tree-sha1 = "f04ec6d9a186115fb38f858f05c0c4e1b7fc9dcb"
uuid = "1080aeaf-3a6a-583e-a51c-c537b09f60ec"
version = "2.1.13+1"

[[deps.nghttp2_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d"
version = "1.52.0+1"

[[deps.p7zip_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0"
version = "17.4.0+2"

[[deps.prrte_jll]]
deps = ["Artifacts", "Hwloc_jll", "JLLWrappers", "Libdl", "PMIx_jll", "libevent_jll"]
git-tree-sha1 = "5adb2d7a18a30280feb66cad6f1a1dfdca2dc7b0"
uuid = "eb928a42-fffd-568d-ab9c-3f5d54fc65b9"
version = "3.0.2+0"
"""

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