### A Pluto.jl notebook ### # v0.19.46 using Markdown using InteractiveUtils # This Pluto notebook uses @bind for interactivity. When running this notebook outside of Pluto, the following 'mock version' of @bind gives bound variables a default value (instead of an error). macro bind(def, element) quote local iv = try Base.loaded_modules[Base.PkgId(Base.UUID("6e696c72-6542-2067-7265-42206c756150"), "AbstractPlutoDingetjes")].Bonds.initial_value catch; b -> missing; end local el = $(esc(element)) global $(esc(def)) = Core.applicable(Base.get, el) ? Base.get(el) : iv(el) el end end # ╔═╡ 882b8a60-ea87-11ed-3518-8db7b95f5a9f begin using Climatology, NCDatasets, CairoMakie, PlutoUI, Glob # input_path=Climatology.SST_demo_path input_path=tempname(); mkdir(input_path) input_path_ersst="files_ersst" path_OISST_stats=Climatology.downloads.OISST_stats_download() function save_fig(fig,trigger=true; file="") isempty(file) ? fil=tempname()*".png" : fil=joinpath(tempdir(),file) save(fil,fig) println(fil) fig end using Pkg; Pkg.status() end # ╔═╡ 714b333f-c35a-4035-9a57-8d3de33a87a2 md"""# SST data ## OISST dataset The NOAA 1/4° daily Optimum Interpolation Sea Surface Temperature (or daily OISST) Climate Data Record (CDR) provides complete ocean temperature fields constructed by combining bias-adjusted observations from different platforms (satellites, ships, buoys) on a regular global grid, with gaps filled in by interpolation. **Data source :** [ncei.noaa.gov](https://www.ncei.noaa.gov/products/climate-data-records/sea-surface-temperature-optimum-interpolation) **Plots for comparison :** [climatereanalyzer.org](https://climatereanalyzer.org/clim/sst_daily/) """ # ╔═╡ 2f945738-a4ba-46a7-be41-58261b939d17 TableOfContents() # ╔═╡ ad758a95-5a23-4a84-afbf-2228f5938904 md"""## OISST Anomaly Map""" # ╔═╡ 3b7f039f-5dcc-4f17-b1f2-2ea27e54a2eb begin b_fil_delta = @bind fil_del Select([1,3,7,30,365],default=1) md"""- \# of days in between maps? $(b_fil_delta) """ end # ╔═╡ 68d367ba-ea7f-4870-8317-f777edaefd4d md"""## Regional SST timeseries""" # ╔═╡ 47f1f04b-d40e-4570-8112-1c38bca794a3 begin b_lon0 = @bind lon0 Select(5:10:360,default=205) b_lat0 = @bind lat0 Select(-85:10:85,default=25) md"""Select Location ? - longitude = $(b_lon0) - latitude = $(b_lat0) """ end # ╔═╡ 24487624-d4f8-4b35-8512-f3753b2025de begin b_show_anom = @bind show_anom Select([true,false], default=true) b_show_clim = @bind show_clim Select([true,false], default=false) md"""#### Closer Look Show anomaly? $(b_show_anom) Show climatology? $(b_show_clim) """ end # ╔═╡ eef9e624-5021-4ab8-9138-57214d314ab6 md"""#### Compare to WHOTS""" # ╔═╡ 937b175f-7568-4920-9925-a1c8ce0dd4a8 do_plot_WHOTS=false # ╔═╡ 0e68e2d3-c774-4e57-b54b-84c205cd459a if do_plot_WHOTS using OceanRobots (WHOTS,WHOTSunits)=OceanSites.read_WHOTS() end # ╔═╡ 095b931d-ec21-4b70-bc5c-67922def83df md"""## Zonal Mean Timeseries""" # ╔═╡ 2f277f58-052b-43ff-b219-b72c41f80455 do_zonal_mean=false # ╔═╡ ce4ae175-8d7d-4da7-b01b-833ee38b115a md"""## Global Mean Timeseries Global and zonal means are calculated from the coarse grained data set (like the _local time series_). """ # ╔═╡ 227000e4-e4c4-4619-8f9b-0f999863658d md"""#### Closer Look _Note : first left hand side value is incorrect_ """ # ╔═╡ f3a46bdc-8541-423c-8c86-b9dd7413d42d md"""## Marine Heat Waves _Periods above 90 percentile threshold defined by season._ 1. local SST 1. global SST """ # ╔═╡ 4c2e8d98-d373-495d-9e1b-710d24a03312 md"""## ERSST Anomaly Map Extended Reconstructed Sea Surface Temperature (ERSST) is a global monthly analysis of SST data derived from the International Comprehensive Ocean–Atmosphere Dataset (ICOADS) from 1853 with a 2 degree resolution. **Data source** : [ncei.noaa.gov](https://www.ncei.noaa.gov/products/extended-reconstructed-sst) """ # ╔═╡ f7d8e391-53e7-438f-a237-cf65e57af950 do_ERSST_map=false # ╔═╡ cfd95718-7e1e-4b0c-931c-9dce8a3faea0 begin dfp = @bind do_future_projection Select([true,false],default=false) b_ny = @bind ny Select(0:10:80) b_showgrid = @bind showgrid Select([true,false],default=false) b_scenario = @bind scenario Select([119,126,245,370,585],default=245) md"""## Climate Projection A climate anomaly can be added from a chosen climate scenario and time horizon. This was done using [ClimateModels.jl](https://github.com/gaelforget/ClimateModels.jl#readme) to drive the [Hector simple climate model](https://jgcri.github.io/hector/index.html). If `fast foward` >0 then we extrapolate in time by `ny` years using climate `scenario`. - show climate projection? $(dfp) - fast forward by $(b_ny) years - following scenario ssp$(b_scenario) """ end # ╔═╡ d5a92490-636a-4d61-b843-64a6eda9d83b md"""## Appendix""" # ╔═╡ 044069e5-0d35-440e-9e62-561e11de6d18 doSave=true # ╔═╡ b548be7e-a0d6-4051-b3bd-2834cdd01ce4 begin dlon=10.0 dnl=Int(dlon/0.25) (df,gdf,kdf)=SST_coarse_grain.lowres_read(fil="lowres_oisst_sst_$(dlon).csv",path=path_OISST_stats) show(df) end # ╔═╡ 27c6c10b-93f0-4b3c-910c-a52c9b30ddf3 begin kdf0=kdf[SST_coarse_grain.lowres_index(lon0,lat0,kdf)] (lon1,lat1)=SST_coarse_grain.lowres_position(kdf0.i,kdf0.j,kdf) end # ╔═╡ 3178b826-8f9d-4cf6-955f-c40887e15476 begin (fil1,fil2)=SST_FILES.file_lists(path=input_path) list=SST_FILES.read_files_list(path=input_path) files_list=SST_processing.download_files(path=input_path,short_demo=true) display([input_path;basename.(files_list)]) end # ╔═╡ 1632750d-0908-4b06-98dc-861101449fef begin tt=(length(files_list)>30 ? range(length(files_list),step=-fil_del,length=30) : tt=(1:length(files_list))) b_fil_sst = @bind fil_sst Select(files_list[tt],default=files_list[end]) b_ano_sst = @bind ano_sst Select([true,false]) b_ano_ncei = @bind ano_ncei Select([true,false],default=false) md""" - file name = $(b_fil_sst) - subtract 92-11 climatology = $(b_ano_sst) - show NCEI anomaly instead = $(b_ano_ncei) _If true then the monthly climatology calculated over 1992-2011 is subtracted._ """ end # ╔═╡ 0468be31-8bff-4606-902a-474d4225d108 ts=SST_timeseries.calc(kdf0,list,gdf=gdf) # ╔═╡ d6d3e960-c150-40fd-81fd-36bd0a9f8f40 let f3b=plot(SSTdiag(options=(plot_type=:by_year,ts=ts))) save_fig(f3b,doSave,file="sst_local_by_year.png") end # ╔═╡ cd786d83-1b65-4e3d-8e1f-46a9994a827b let options=(plot_type=:by_time,ts=ts,show_anom=show_anom,show_clim=show_clim) f4=plot(SSTdiag(options=options)) save_fig(f4,doSave,file="sst_local.png") end # ╔═╡ 0fd9ae44-89cb-468a-9921-5fe8c16093b7 if do_plot_WHOTS using Dates, Statistics runmean(x,n1)=[mean(x[i:i-1+n1]) for i in 1:length(x)-n1] TEMP=runmean(WHOTS.TEMP,5*24) TIM=[1992 .+ (t-DateTime("1992-01-01","yyyy-mm-dd")).value/86400000/365 for t in WHOTS.TIME] TIM=runmean(TIM,5*24) options=(plot_type=:by_time,ts=ts,show_anom=show_anom,show_clim=show_clim) f4=plot(SSTdiag(options=options)) lines!(TIM,TEMP) limits!(2003,2019,20,28) f4 end # ╔═╡ e87d0817-827d-4b44-a8b6-f566b61391c2 let f3=plot(SSTdiag(options=(plot_type=:MHW,ts=ts))) save_fig(f3,doSave,file="sst_local_MHW.png") end # ╔═╡ c925f69f-6ecc-428e-aae1-0a2446baddb8 G=SST_coarse_grain.grid(files_list[end]) # ╔═╡ 9ecb8f63-e8ac-4e5b-9078-356f7f434f2c begin file_climatology=joinpath(path_OISST_stats,"OISST_mean_monthly_1992_2011.nc") (year_sst,mon_sst,day_sst)=SST_FILES.ymd(fil_sst) if ano_ncei v_map="anom" ttl="SST anomaly (NCEI) for time "*fil_sst[end-10:end-3] cr_map=4 .*(-1.0,1.0) cm_map=:curl elseif ano_sst v_map="anom_recompute" ttl="SST anomaly (recomputed) for $(year_sst) / $(mon_sst) / $(day_sst)" cr_map=4 .*(-1.0,1.0) cm_map=:curl else v_map="sst" ttl="SST for time "*fil_sst[end-10:end-3] cr_map=(-1.0,31.0) cm_map=:thermal end to_map=(field=SST_FILES.read_map(variable=v_map,file=fil_sst,file_climatology=file_climatology), title=ttl,colorrange=cr_map,colormap=cm_map, lon=G.lon,lat=G.lat,lon1=lon1,lat1=lat1,showgrid=false) end # ╔═╡ 1bed0676-4984-4909-a6af-4d25d894aa69 begin f7=plot(SSTdiag(options=(plot_type=:map,to_map=to_map))) save_fig(f7,doSave,file="sst_anomaly_map.png") end # ╔═╡ beb0a305-8261-475e-bf8d-be84d8386f68 if do_ERSST_map function ERSST_map(year_sst,mon_sst;path=Climatology.SST_demo_path) ersst_fil=SST_FILES.@sprintf "ersst.v5.%i%02i.nc" year_sst mon_sst (year_sst==2023&&mon_sst>7)||(year_sst>2023) ? ersst_fil="ersst.v5.202307.nc" : nothing ersst=Dataset(joinpath(path,ersst_fil)) ersst_ssta=fill(NaN,(180,89)) tmp1=ersst[:ssta][:,:] [ersst_ssta[i]=Float64.(tmp1[i]) for i in findall((!ismissing).(tmp1))] fig=plot(SSTdiag(options=(plot_type=:map_base,))) ax=current_axis() hm=heatmap!(ax,ersst[:lon][:],ersst[:lat][:],ersst_ssta,colormap=:curl,colorrange=4 .*(-1.0,1.0)) ax.title=ersst_fil Colorbar(fig[1, 2],hm) fig end fig=ERSST_map(year_sst,mon_sst;path=input_path_ersst) save_fig(fig,doSave,file="sst_anomaly_map_ERSST.png") end # ╔═╡ d37e8f34-77e8-4283-b871-d8ce0497accf if do_future_projection offset=SST_scenarios.calc_offset(year_sst,ny,scenario) "SST offset = $(offset)" end # ╔═╡ 9f7d8596-1576-4d96-803f-21d9b5c53aa4 if do_zonal_mean zm=SST_coarse_grain.calc_zm(G,df) for l in 1:size(zm,1) if !isnan(zm[l,1]) tmp2=SST_timeseries.calc(zm[l,:],list,title="Zonal Mean SST") zm[l,:].=tmp2.sst-tmp2.clim end end size(zm) end # ╔═╡ 9516cb99-ba91-4c5e-b5a4-db0b2f702934 if do_zonal_mean f5=plot(SSTdiag(options=(plot_type=:TimeLat,zm=zm,title="OISST anomaly"))) save_fig(f5,doSave,file="sst_zonal_mean.png") end # ╔═╡ 9aaa7fd5-3103-48f9-9cfb-ce6d775c05f8 begin # should be in a function within SST_coarsegrain module? gdf1=SST_FILES.groupby(df, :t) tmp1=gdf1[end] area_tmp=[SST_coarse_grain.areaintegral(G.msk,x.i,x.j,G,dnl) for x in eachrow(tmp1)] glmsst=[sum(tmp1.sst[:].*area_tmp)/sum(area_tmp) for tmp1 in gdf1] ts_global=SST_timeseries.calc(glmsst,list,title="Global Mean SST") end # ╔═╡ 679faf60-95db-40bc-a07d-672f7510e8fb let x=SSTdiag(options=(plot_type=:local_and_global,ts=ts,ts_global=ts_global,kdf0=kdf0)) f5=plot(x) save_fig(f5,doSave,file="sst_global_local.png") end # ╔═╡ f5d4c0db-5b68-4ce8-badb-11ac0c9d85de let options=(plot_type=:by_time,ts=ts_global,show_anom=show_anom,show_clim=show_clim) f1=plot(SSTdiag(options=options)) save_fig(f1,doSave,file="sst_global_mean.png") end # ╔═╡ 3c0da51f-109a-4b3d-bfe2-82103a1d7270 let f2=plot(SSTdiag(options=(plot_type=:by_year,ts=ts_global))) save_fig(f2,doSave,file="sst_global_mean_by_year.png") end # ╔═╡ 5c73d087-c0bb-40ff-85f9-2d5ddd0690f1 let f3c=plot(SSTdiag(options=(plot_type=:MHW,ts=ts_global))) save_fig(f3c,doSave,file="sst_global_mean_MHW.png") end # ╔═╡ b8d4025a-20f4-4032-825b-5e218fae4b9a let tmp1=SST_FILES.groupby(df, :t)[end] #this first method is incorrect -- I think because of different orderings area_kdf=[SST_coarse_grain.areaintegral(ones(size(G.msk)),x.i,x.j,G,dnl) for x in kdf] r1=sum(tmp1.sst[:].*area_kdf)/sum(area_kdf) tmp2=[SST_coarse_grain.areaintegral(G.msk,x.i,x.j,G,dnl) for x in eachrow(tmp1)] r2=sum(tmp1.sst[:].*tmp2)/sum(tmp2) (r1,r2) end # ╔═╡ 25cebf8f-c577-4bb8-be6e-cb2aa3388e07 let sst=SST_FILES.read_map(variable="sst",file=fil_sst,file_climatology=file_climatology) ii=findall((!isnan).(G.msk)) tmp0=sum(G.area[ii].*sst[ii])/sum(G.area[ii]) tmp2=zeros(size(G.msk)) tmp2[ii].=sst[ii] tmp1=[SST_coarse_grain.areaintegral(G.msk,x.i,x.j,G,dnl) for x in kdf] tmp2=[SST_coarse_grain.areaintegral(tmp2,x.i,x.j,G,dnl) for x in kdf] [tmp0 sum(tmp2)/sum(tmp1)] end # ╔═╡ 2dcbb093-48f8-44cc-a756-c0c46f6d0844 function projection_map(fil_sst1,mon_sst,offset) sst = Dataset(fil_sst1,"r") do ds ds["sst"][:,:,1,1] end files_climatology="files_climatology/OISST_mean_monthly_1992_2011.nc" sst_clim = Dataset(files_climatology)["sst"][:,:,mon_sst] fig=plot(SSTdiag(options=(plot_type=:map_base,))) ax=current_axis() hm=heatmap!(ax,G.lon,G.lat,offset .+sst-sst_clim,colormap=:curl,colorrange=4 .*(-1.0,1.0)) # showgrid ? lowres_scatter(ax) : nothing Colorbar(fig[1, 2],hm) ax.title="SST projection" fig end # ╔═╡ fb9334f7-c57f-4c1e-8430-e0f81a15a17e do_future_projection ? projection_map(fil_sst1,mon_sst,offset) : "climate projection turned off" # ╔═╡ 00000000-0000-0000-0000-000000000001 PLUTO_PROJECT_TOML_CONTENTS = """ [deps] CairoMakie = "13f3f980-e62b-5c42-98c6-ff1f3baf88f0" Climatology = "9e9a4d37-2d2e-41e3-8b85-f7978328d9c7" Dates = "ade2ca70-3891-5945-98fb-dc099432e06a" Glob = "c27321d9-0574-5035-807b-f59d2c89b15c" NCDatasets = "85f8d34a-cbdd-5861-8df4-14fed0d494ab" OceanRobots = "0b51df41-3294-4961-8d23-db645e32016d" Pkg = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" PlutoUI = "7f904dfe-b85e-4ff6-b463-dae2292396a8" Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" [compat] Glob = "~1.3.1" PlutoUI = "~0.7.52" """ # ╔═╡ 00000000-0000-0000-0000-000000000002 PLUTO_MANIFEST_TOML_CONTENTS = """ # This file is machine-generated - editing it directly is not advised julia_version = "1.10.5" manifest_format = "2.0" project_hash = "543b842e4768414775b89564096416528d2d0e7d" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" version = "1.5.0" weakdeps = ["ChainRulesCore", "Test"] [deps.AbstractFFTs.extensions] AbstractFFTsChainRulesCoreExt = "ChainRulesCore" AbstractFFTsTestExt = "Test" [[deps.AbstractPlutoDingetjes]] deps = ["Pkg"] git-tree-sha1 = "6e1d2a35f2f90a4bc7c2ed98079b2ba09c35b83a" uuid = "6e696c72-6542-2067-7265-42206c756150" version = "1.3.2" [[deps.AbstractTrees]] git-tree-sha1 = 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