### A Pluto.jl notebook ###
# v0.20.21

using Markdown
using InteractiveUtils

# This Pluto notebook uses @bind for interactivity. When running this notebook outside of Pluto, the following 'mock version' of @bind gives bound variables a default value (instead of an error).
macro bind(def, element)
    #! format: off
    return quote
        local iv = try Base.loaded_modules[Base.PkgId(Base.UUID("6e696c72-6542-2067-7265-42206c756150"), "AbstractPlutoDingetjes")].Bonds.initial_value catch; b -> missing; end
        local el = $(esc(element))
        global $(esc(def)) = Core.applicable(Base.get, el) ? Base.get(el) : iv(el)
        el
    end
    #! format: on
end

# ╔═╡ a8e0b727-a416-4aad-b660-69e5470c7e9e
begin
	using Climatology, NCDatasets, CairoMakie, Dataverse, ArchGDAL, PlutoUI
	ClimatologyMakieExt=Base.get_extension(Climatology, :ClimatologyMakieExt)
	"Done with Julia packages"
end

# ╔═╡ 71e87ed3-5a9f-49aa-99af-cf144501c678
md"""# Regional Sea Level

Visualize dynamic sea level anomaly (colors) and ocean bathymetry/topography (contours) in the region of the Azores as a function of space and time. 

!!! tip
    Choose between two data sets (sources: NASA PODAAC, ESA CMEMS), select time, or generate animation.
"""

# ╔═╡ a58cc4b4-7023-4dcf-a5f4-6366be8047a3
TableOfContents()

# ╔═╡ 62e0b8a9-0025-4ce7-9538-b6114d97b762
md"""## Visualize Data

- Color shading is sea level anomaly from a gridded data product based on satellite measurement (altimetry).
- Contours show the relief (topography, bathymetry). Light pink contours correspond to the Azores islands.
"""

# ╔═╡ c93dde18-e639-4edd-9192-f6c9eed0cb89
@bind fil Select(["sla_podaac.nc","sla_cmems.nc"])

# ╔═╡ 0c9fdfb0-bddc-4def-9954-526978491a84
dates=SLA_MAIN.sla_dates(fil)

# ╔═╡ 8ff180a4-dd71-4a70-82ab-70bc80427abb
@bind d0 Select(dates)

# ╔═╡ ff7dd5eb-5b1b-4314-9553-b8c05c4d7376
md"""## Data Set"""

# ╔═╡ 9b3c3856-9fe1-43ba-97a2-abcd5b385c1d
sla=read(SeaLevelAnomaly(name=fil[1:end-3],path=tempname()))

# ╔═╡ a45bbdbd-3793-4e69-b042-39a4a1ac7ed7
plot(sla) #,topo=topo)

# ╔═╡ 1cf2cdb9-3c09-4b39-81cf-49318c16f531
md"""## Apendix

### Julia Codes"""

# ╔═╡ 50b75406-e55f-433d-bd7b-089d975e5001
t0=findall(dates.==d0)[1]

# ╔═╡ af68228e-710c-4a5a-be48-c716592f8f45
md"""### Data Sources

- Topography, bathymetry : NOAA [etopo-global-relief-model](https://www.ncei.noaa.gov/products/etopo-global-relief-model)
- Sea Level Anomaly #1 : NASA PODAAC [page 1](https://sealevel.nasa.gov/data/dataset/?identifier=SLCP_SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205_2205), [page 2](https://podaac.jpl.nasa.gov/dataset/SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205)
- Sea Level Anomaly #2 : ESA CMEMS [here](https://data.marine.copernicus.eu/product/SEALEVEL_GLO_PHY_L4_MY_008_047/description)

The SLA data sets used in this notebook are available in [this Dataverse repo](https://doi.org/10.7910/DVN/OYBLGK). 

They were generated using `OceanRobots.podaac_sla.subset()` from the above sources.
"""

# ╔═╡ aa82d9bd-8ba2-4e18-8f65-e71b0361f5cb
begin
	DOI="doi:10.7910/DVN/OYBLGK"
	df=Dataverse.file_list(DOI)
	@bind filename Select(df.filename,default="exportImage_60arc.tiff")
end

# ╔═╡ 24a9fc25-b85b-4582-a36b-0a43e04ee799
begin
    pth0=joinpath(tempdir(),"azores_region_data")
    file0=joinpath(pth0,filename)
    !ispath(pth0) ? mkdir(pth0) : nothing
    !isfile(file0) ? Dataverse.file_download(df,filename,pth0) : nothing
    "Downloaded to "*file0
end

# ╔═╡ eeb9d308-ef62-4dcc-ba90-a2a1912ef2bd
topo = begin
	dataset = ArchGDAL.read(joinpath(pth0,"exportImage_60arc.tiff"))
	band =ArchGDAL.getband(dataset, 1)
	geotransform = ArchGDAL.getgeotransform(dataset)
	
	(nx,ny)=size(band)
	lon=geotransform[1] .+ geotransform[2]*(0.5:nx-0.5)
	lat=geotransform[4] .+ geotransform[6]*(0.5:ny-0.5)
	(lon=lon,lat=lat,z=band[:,:])
end	

# ╔═╡ 5fec1029-34a1-4d43-9183-7e6095194a3a
md"""### Create Animation"""

# ╔═╡ ec8cbf44-82d9-11ed-0131-1bdea9285f79
begin
    nt=size(sla.data[1]["SLA"],3)
	framerate=Int(floor(nt/120))
end

# ╔═╡ 8fbd1b1d-affe-4e30-a3b2-f2584e459003
#fil_mp4=ClimatologyMakieExt.make_movie(sla.data[1],1:nt,framerate=framerate,dates=dates)

# ╔═╡ 2d5611a9-b8ea-4d26-8ca3-edff9f2ebfdd
begin
	url_mp4="http://www.gaelforget.net/notebooks/sla_podaac.mp4"
	RemoteResource(url_mp4,:width=>400)
end


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[[deps.Xorg_libxcb_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libXau_jll", "Xorg_libXdmcp_jll"]
git-tree-sha1 = "bfcaf7ec088eaba362093393fe11aa141fa15422"
uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b"
version = "1.17.1+0"

[[deps.Xorg_xtrans_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "a63799ff68005991f9d9491b6e95bd3478d783cb"
uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10"
version = "1.6.0+0"

[[deps.ZipFile]]
deps = ["Libdl", "Printf", "Zlib_jll"]
git-tree-sha1 = "f492b7fe1698e623024e873244f10d89c95c340a"
uuid = "a5390f91-8eb1-5f08-bee0-b1d1ffed6cea"
version = "0.10.1"

[[deps.Zlib_jll]]
deps = ["Libdl"]
uuid = "83775a58-1f1d-513f-b197-d71354ab007a"
version = "1.3.1+2"

[[deps.Zstd_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "446b23e73536f84e8037f5dce465e92275f6a308"
uuid = "3161d3a3-bdf6-5164-811a-617609db77b4"
version = "1.5.7+1"

[[deps.boost_jll]]
deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"]
git-tree-sha1 = "25fb6ecbb784a45f8ea74584fa631a9e85393dd0"
uuid = "28df3c45-c428-5900-9ff8-a3135698ca75"
version = "1.87.0+0"

[[deps.brotli_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "46fda47f4215c957bc92fd5fbb5ad04fee1e3743"
uuid = "4611771a-a7d2-5e23-8d00-b1becdba1aae"
version = "1.2.0+0"

[[deps.dlfcn_win32_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "e141d67ffe550eadfb5af1bdbdaf138031e4805f"
uuid = "c4b69c83-5512-53e3-94e6-de98773c479f"
version = "1.4.2+0"

[[deps.libaec_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "1aa23f01927b2dac46db77a56b31088feee0a491"
uuid = "477f73a3-ac25-53e9-8cc3-50b2fa2566f0"
version = "1.1.4+0"

[[deps.libblastrampoline_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "8e850b90-86db-534c-a0d3-1478176c7d93"
version = "5.15.0+0"

[[deps.libgeotiff_jll]]
deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LibCURL_jll", "Libdl", "Libtiff_jll", "PROJ_jll", "Zlib_jll"]
git-tree-sha1 = "cbdbc9ae1127f81cb653a4f7545d89f8db2a17a7"
uuid = "06c338fa-64ff-565b-ac2f-249532af990e"
version = "100.702.400+0"

[[deps.libpng_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"]
git-tree-sha1 = "6ab498eaf50e0495f89e7a5b582816e2efb95f64"
uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f"
version = "1.6.54+0"

[[deps.libwebp_jll]]
deps = ["Artifacts", "Giflib_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libglvnd_jll", "Libtiff_jll", "libpng_jll"]
git-tree-sha1 = "4e4282c4d846e11dce56d74fa8040130b7a95cb3"
uuid = "c5f90fcd-3b7e-5836-afba-fc50a0988cb2"
version = "1.6.0+0"

[[deps.libzip_jll]]
deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "OpenSSL_jll", "XZ_jll", "Zlib_jll", "Zstd_jll"]
git-tree-sha1 = "86addc139bca85fdf9e7741e10977c45785727b7"
uuid = "337d8026-41b4-5cde-a456-74a10e5b31d1"
version = "1.11.3+0"

[[deps.muparser_jll]]
deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"]
git-tree-sha1 = "70ee0f42a44ef6e16298e5bfc8b6e311d08e49bb"
uuid = "888e69b1-873b-5047-a2fc-24c07cbe9dc8"
version = "2.3.5+0"

[[deps.nghttp2_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d"
version = "1.64.0+1"

[[deps.p7zip_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0"
version = "17.5.0+2"

[[deps.snappy_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "ca88363dd41d2547f52118287dd34dbbc14f3eb7"
uuid = "fe1e1685-f7be-5f59-ac9f-4ca204017dfd"
version = "1.2.3+0"
"""

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