### A Pluto.jl notebook ###
# v0.20.17

using Markdown
using InteractiveUtils

# ╔═╡ bf29d9b6-be57-11ec-2b83-87ce1f770075
using CairoMakie, OceanRobots, FFTW, PlutoUI

# ╔═╡ 97537903-fb3b-4837-9e7c-461cb9e4ef5e
md"""# Transpose _Cloud-Drift_ workflow into Julia

See <https://github.com/Cloud-Drift/earthcube-meeting-2022> for context and detail.
"""

# ╔═╡ c56e7f24-7be8-4209-8fc9-843cb674fd6e
TableOfContents()

# ╔═╡ f3c351c7-3fba-4ee8-8522-80fd0e8921af
md"""## Visualize Data"""

# ╔═╡ 05b32012-927d-42b4-8a18-fdfcb051a3fd
md"""## Per Trajectory Statistics"""


# ╔═╡ 89c82c13-9221-48b8-9138-79b91603d7e6
md"""## Appendix

Packages, grid, functions used in the notebook are defined here.
"""

# ╔═╡ d0362426-0609-4fcf-a888-77892db9b7e7
begin
    GDP_CD=read(CloudDrift(),"")
    df=GDP_CD.data.main
    df_subset=GDP_CD.data.subset
	"Done reading data"
end

# ╔═╡ 60479536-8238-4077-bdcd-776e07330621
let
	ii=findall(isfinite.(df_subset.longitude.*df_subset.latitude))	
	scatter(df_subset.longitude[ii], df_subset.latitude[ii], markersize=2,
		color=sqrt.(df_subset.ve.^2+df_subset.vn.^2), colorrange=(0,2.5), colormap=:speed)
end

# ╔═╡ d4af67e7-2308-4135-929e-c7fc6572d6c7
heatmap(GDP_CD.data.grid.lon,GDP_CD.data.grid.lat,GDP_CD.data.ve)

# ╔═╡ a25027b5-5b0e-4190-b4b6-987f4e16ccd8
begin
	gdf2=GDP_CloudDrift.groupby(df,:ID)
	df2=GDP_CloudDrift.trajectory_stats(gdf2)
	trajectory_periodogram(cv) = 1/24 *abs.(fft(cv[:])).^2
	periodograms=[trajectory_periodogram(tmp.cv[:]) for tmp in gdf2]
	df2[1,:]
end

# ╔═╡ efc6b8b3-a55b-4830-953c-2a51ce162604
begin
	# ( for detail, see original notebook @ https://github.com/Cloud-Drift/earthcube-meeting-2022 )

    ii=1

    # calculate inertial frequency in cycle per day [cpd] from the mean latitude of trajectory
    omega = 7.2921159e-5  # Earth's rotation rate [rad/s]
    seconds_per_day = 60*60*24  # [s]
    fi = -2*omega*(seconds_per_day/(2*pi))*sind(df2[ii,:latitude])

    # define frequency scale/abscissa
    dt = 1/24  # [-]
    f = fftfreq(length(periodograms[ii]), dt) /dt/dt
    ss = log10.(periodograms[ii])  # spectrum of the ith trajectory 

    # plot
    function plot1(f,ss)
        fig1 = Figure()
        ax1=Axis(fig1[1,1],ylabel="PSD (m^2 / s^2 / cpd)",xlabel="Frequency [cpd]")
        lines!(ax1,fftshift(f), fftshift(ss),label="Spectrum")
        lines!(ax1,[fi,fi], [-3.0,6.0], color=:red, linestyle=:dash, linewidth=2,label="Inertial frequency")
        #fig1[1, 2] = Legend(fig1, ax1)
        axislegend(position = :rt)

        fig1
    end

	fig1=plot1(f,ss)
end

# ╔═╡ 00000000-0000-0000-0000-000000000001
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version = "3.12.1+0"

[[deps.libass_jll]]
deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Zlib_jll"]
git-tree-sha1 = "125eedcb0a4a0bba65b657251ce1d27c8714e9d6"
uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0"
version = "0.17.4+0"

[[deps.libblastrampoline_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "8e850b90-86db-534c-a0d3-1478176c7d93"
version = "5.11.0+0"

[[deps.libfdk_aac_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "646634dd19587a56ee2f1199563ec056c5f228df"
uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280"
version = "2.0.4+0"

[[deps.libpng_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"]
git-tree-sha1 = "07b6a107d926093898e82b3b1db657ebe33134ec"
uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f"
version = "1.6.50+0"

[[deps.libsixel_jll]]
deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "libpng_jll"]
git-tree-sha1 = "c1733e347283df07689d71d61e14be986e49e47a"
uuid = "075b6546-f08a-558a-be8f-8157d0f608a5"
version = "1.10.5+0"

[[deps.libvorbis_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll"]
git-tree-sha1 = "11e1772e7f3cc987e9d3de991dd4f6b2602663a5"
uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a"
version = "1.3.8+0"

[[deps.libwebp_jll]]
deps = ["Artifacts", "Giflib_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libglvnd_jll", "Libtiff_jll", "libpng_jll"]
git-tree-sha1 = "4e4282c4d846e11dce56d74fa8040130b7a95cb3"
uuid = "c5f90fcd-3b7e-5836-afba-fc50a0988cb2"
version = "1.6.0+0"

[[deps.libzip_jll]]
deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "OpenSSL_jll", "XZ_jll", "Zlib_jll", "Zstd_jll"]
git-tree-sha1 = "86addc139bca85fdf9e7741e10977c45785727b7"
uuid = "337d8026-41b4-5cde-a456-74a10e5b31d1"
version = "1.11.3+0"

[[deps.nghttp2_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d"
version = "1.59.0+0"

[[deps.oneTBB_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "d5a767a3bb77135a99e433afe0eb14cd7f6914c3"
uuid = "1317d2d5-d96f-522e-a858-c73665f53c3e"
version = "2022.0.0+0"

[[deps.p7zip_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0"
version = "17.4.0+2"

[[deps.snappy_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "ca88363dd41d2547f52118287dd34dbbc14f3eb7"
uuid = "fe1e1685-f7be-5f59-ac9f-4ca204017dfd"
version = "1.2.3+0"

[[deps.x264_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "14cc7083fc6dff3cc44f2bc435ee96d06ed79aa7"
uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a"
version = "10164.0.1+0"

[[deps.x265_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "e7b67590c14d487e734dcb925924c5dc43ec85f3"
uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76"
version = "4.1.0+0"
"""

# ╔═╡ Cell order:
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# ╠═bf29d9b6-be57-11ec-2b83-87ce1f770075
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