### A Pluto.jl notebook ###
# v0.19.46

using Markdown
using InteractiveUtils

# This Pluto notebook uses @bind for interactivity. When running this notebook outside of Pluto, the following 'mock version' of @bind gives bound variables a default value (instead of an error).
macro bind(def, element)
    quote
        local iv = try Base.loaded_modules[Base.PkgId(Base.UUID("6e696c72-6542-2067-7265-42206c756150"), "AbstractPlutoDingetjes")].Bonds.initial_value catch; b -> missing; end
        local el = $(esc(element))
        global $(esc(def)) = Core.applicable(Base.get, el) ? Base.get(el) : iv(el)
        el
    end
end

# ╔═╡ a8e0b727-a416-4aad-b660-69e5470c7e9e
begin
	using OceanRobots, CairoMakie, Dataverse, ArchGDAL, PlutoUI
	OceanRobotsMakieExt=Base.get_extension(OceanRobots, :OceanRobotsMakieExt)
	"Done with Julia packages"
end

# ╔═╡ 71e87ed3-5a9f-49aa-99af-cf144501c678
md"""# Regional Sea Level

Visualize dynamic sea level anomaly (colors) and ocean bathymetry/topography (contours) in the region of the Azores as a function of space and time. 

!!! tip
    Choose between two data sets (sources: NASA PODAAC, ESA CMEMS), select time, or generate animation.
"""

# ╔═╡ a58cc4b4-7023-4dcf-a5f4-6366be8047a3
TableOfContents()

# ╔═╡ 62e0b8a9-0025-4ce7-9538-b6114d97b762
md"""## Visualize Data

- Color shading is sea level anomaly from a gridded data product based on satellite measurement (altimetry).
- Contours show the relief (topography, bathymetry). Light pink contours correspond to the Azores islands.
"""

# ╔═╡ c93dde18-e639-4edd-9192-f6c9eed0cb89
@bind fil Select(["sla_podaac.nc","sla_cmems.nc"])

# ╔═╡ 0c9fdfb0-bddc-4def-9954-526978491a84
dates=OceanRobotsMakieExt.sla_dates(fil)

# ╔═╡ 8ff180a4-dd71-4a70-82ab-70bc80427abb
@bind d0 Select(dates)

# ╔═╡ ff7dd5eb-5b1b-4314-9553-b8c05c4d7376
md"""## Data Set"""

# ╔═╡ 9b3c3856-9fe1-43ba-97a2-abcd5b385c1d
sla=read(SeaLevelAnomaly(),Symbol(fil[1:end-3]))

# ╔═╡ 1cf2cdb9-3c09-4b39-81cf-49318c16f531
md"""## Apendix

### Julia Codes"""

# ╔═╡ 50b75406-e55f-433d-bd7b-089d975e5001
t0=findall(dates.==d0)[1]

# ╔═╡ af68228e-710c-4a5a-be48-c716592f8f45
md"""### Data Sources

- Topography, bathymetry : NOAA [etopo-global-relief-model](https://www.ncei.noaa.gov/products/etopo-global-relief-model)
- Sea Level Anomaly #1 : NASA PODAAC [page 1](https://sealevel.nasa.gov/data/dataset/?identifier=SLCP_SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205_2205), [page 2](https://podaac.jpl.nasa.gov/dataset/SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205)
- Sea Level Anomaly #2 : ESA CMEMS [here](https://data.marine.copernicus.eu/product/SEALEVEL_GLO_PHY_L4_MY_008_047/description)

The SLA data sets used in this notebook are available in [this Dataverse repo](https://doi.org/10.7910/DVN/OYBLGK). 

They were generated using `OceanRobots.podaac_sla.subset()` from the above sources.
"""

# ╔═╡ aa82d9bd-8ba2-4e18-8f65-e71b0361f5cb
begin
	DOI="doi:10.7910/DVN/OYBLGK"
	df=Dataverse.file_list(DOI)
	@bind filename Select(df.filename,default="exportImage_60arc.tiff")
end

# ╔═╡ 24a9fc25-b85b-4582-a36b-0a43e04ee799
begin
    pth0=joinpath(tempdir(),"azores_region_data")
    file0=joinpath(pth0,filename)
    !ispath(pth0) ? mkdir(pth0) : nothing
    !isfile(file0) ? Dataverse.file_download(df,filename,pth0) : nothing
    "Downloaded to "*file0
end

# ╔═╡ eeb9d308-ef62-4dcc-ba90-a2a1912ef2bd
topo = begin
	dataset = ArchGDAL.read(joinpath(pth0,"exportImage_60arc.tiff"))
	band =ArchGDAL.getband(dataset, 1)
	geotransform = ArchGDAL.getgeotransform(dataset)
	
	(nx,ny)=size(band)
	lon=geotransform[1] .+ geotransform[2]*(0.5:nx-0.5)
	lat=geotransform[4] .+ geotransform[6]*(0.5:ny-0.5)
	(lon=lon,lat=lat,z=band[:,:])
end	

# ╔═╡ a45bbdbd-3793-4e69-b042-39a4a1ac7ed7
plot(sla,dates=dates,topo=topo)

# ╔═╡ 5fec1029-34a1-4d43-9183-7e6095194a3a
md"""### Create Animation"""

# ╔═╡ ec8cbf44-82d9-11ed-0131-1bdea9285f79
begin
    nt=size(sla.data["SLA"],3)
	framerate=Int(floor(nt/120))
end

# ╔═╡ 8fbd1b1d-affe-4e30-a3b2-f2584e459003
#fil_mp4=OceanRobotsMakieExt.make_movie(sla.data,1:nt,framerate=framerate,dates=dates)

# ╔═╡ 2d5611a9-b8ea-4d26-8ca3-edff9f2ebfdd
begin
	url_mp4="http://www.gaelforget.net/notebooks/sla_podaac.mp4"
	RemoteResource(url_mp4,:width=>400)
end

# ╔═╡ 00000000-0000-0000-0000-000000000001
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deps = ["Unicode"]
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uuid = "30578b45-9adc-5946-b283-645ec420af67"
version = "0.4.1"

[[deps.URIs]]
git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b"
uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4"
version = "1.5.1"

[[deps.UUIDs]]
deps = ["Random", "SHA"]
uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4"

[[deps.Unicode]]
uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5"

[[deps.UnicodeFun]]
deps = ["REPL"]
git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf"
uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1"
version = "0.4.1"

[[deps.Unitful]]
deps = ["Dates", "LinearAlgebra", "Random"]
git-tree-sha1 = "d95fe458f26209c66a187b1114df96fd70839efd"
uuid = "1986cc42-f94f-5a68-af5c-568840ba703d"
version = "1.21.0"

    [deps.Unitful.extensions]
    ConstructionBaseUnitfulExt = "ConstructionBase"
    InverseFunctionsUnitfulExt = "InverseFunctions"

    [deps.Unitful.weakdeps]
    ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9"
    InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112"

[[deps.WeakRefStrings]]
deps = ["DataAPI", "InlineStrings", "Parsers"]
git-tree-sha1 = "b1be2855ed9ed8eac54e5caff2afcdb442d52c23"
uuid = "ea10d353-3f73-51f8-a26c-33c1cb351aa5"
version = "1.4.2"

[[deps.WoodburyMatrices]]
deps = ["LinearAlgebra", "SparseArrays"]
git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511"
uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6"
version = "1.0.0"

[[deps.WorkerUtilities]]
git-tree-sha1 = "cd1659ba0d57b71a464a29e64dbc67cfe83d54e7"
uuid = "76eceee3-57b5-4d4a-8e66-0e911cebbf60"
version = "1.6.1"

[[deps.XML2_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"]
git-tree-sha1 = "1165b0443d0eca63ac1e32b8c0eb69ed2f4f8127"
uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a"
version = "2.13.3+0"

[[deps.XSLT_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "XML2_jll", "Zlib_jll"]
git-tree-sha1 = "a54ee957f4c86b526460a720dbc882fa5edcbefc"
uuid = "aed1982a-8fda-507f-9586-7b0439959a61"
version = "1.1.41+0"

[[deps.XZ_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "ac88fb95ae6447c8dda6a5503f3bafd496ae8632"
uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800"
version = "5.4.6+0"

[[deps.Xorg_libX11_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"]
git-tree-sha1 = "afead5aba5aa507ad5a3bf01f58f82c8d1403495"
uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc"
version = "1.8.6+0"

[[deps.Xorg_libXau_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8"
uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec"
version = "1.0.11+0"

[[deps.Xorg_libXdmcp_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7"
uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05"
version = "1.1.4+0"

[[deps.Xorg_libXext_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"]
git-tree-sha1 = "d2d1a5c49fae4ba39983f63de6afcbea47194e85"
uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3"
version = "1.3.6+0"

[[deps.Xorg_libXrender_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"]
git-tree-sha1 = "47e45cd78224c53109495b3e324df0c37bb61fbe"
uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa"
version = "0.9.11+0"

[[deps.Xorg_libpthread_stubs_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9"
uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74"
version = "0.1.1+0"

[[deps.Xorg_libxcb_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"]
git-tree-sha1 = "bcd466676fef0878338c61e655629fa7bbc69d8e"
uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b"
version = "1.17.0+0"

[[deps.Xorg_xtrans_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77"
uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10"
version = "1.5.0+0"

[[deps.ZipFile]]
deps = ["Libdl", "Printf", "Zlib_jll"]
git-tree-sha1 = "f492b7fe1698e623024e873244f10d89c95c340a"
uuid = "a5390f91-8eb1-5f08-bee0-b1d1ffed6cea"
version = "0.10.1"

[[deps.Zlib_jll]]
deps = ["Libdl"]
uuid = "83775a58-1f1d-513f-b197-d71354ab007a"
version = "1.2.13+1"

[[deps.Zstd_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "e678132f07ddb5bfa46857f0d7620fb9be675d3b"
uuid = "3161d3a3-bdf6-5164-811a-617609db77b4"
version = "1.5.6+0"

[[deps.boost_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"]
git-tree-sha1 = "7a89efe0137720ca82f99e8daa526d23120d0d37"
uuid = "28df3c45-c428-5900-9ff8-a3135698ca75"
version = "1.76.0+1"

[[deps.isoband_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "51b5eeb3f98367157a7a12a1fb0aa5328946c03c"
uuid = "9a68df92-36a6-505f-a73e-abb412b6bfb4"
version = "0.2.3+0"

[[deps.libaec_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "46bf7be2917b59b761247be3f317ddf75e50e997"
uuid = "477f73a3-ac25-53e9-8cc3-50b2fa2566f0"
version = "1.1.2+0"

[[deps.libaom_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "1827acba325fdcdf1d2647fc8d5301dd9ba43a9d"
uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b"
version = "3.9.0+0"

[[deps.libass_jll]]
deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Zlib_jll"]
git-tree-sha1 = "e17c115d55c5fbb7e52ebedb427a0dca79d4484e"
uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0"
version = "0.15.2+0"

[[deps.libblastrampoline_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "8e850b90-86db-534c-a0d3-1478176c7d93"
version = "5.8.0+1"

[[deps.libfdk_aac_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "8a22cf860a7d27e4f3498a0fe0811a7957badb38"
uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280"
version = "2.0.3+0"

[[deps.libgeotiff_jll]]
deps = ["Artifacts", "JLLWrappers", "LibCURL_jll", "Libdl", "Libtiff_jll", "PROJ_jll"]
git-tree-sha1 = "c48ca6e850d4190dcb8e0ccd220380c2bc678403"
uuid = "06c338fa-64ff-565b-ac2f-249532af990e"
version = "100.701.300+0"

[[deps.libpng_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"]
git-tree-sha1 = "d7015d2e18a5fd9a4f47de711837e980519781a4"
uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f"
version = "1.6.43+1"

[[deps.libsixel_jll]]
deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Pkg", "libpng_jll"]
git-tree-sha1 = "d4f63314c8aa1e48cd22aa0c17ed76cd1ae48c3c"
uuid = "075b6546-f08a-558a-be8f-8157d0f608a5"
version = "1.10.3+0"

[[deps.libvorbis_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"]
git-tree-sha1 = "490376214c4721cdaca654041f635213c6165cb3"
uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a"
version = "1.3.7+2"

[[deps.libzip_jll]]
deps = ["Artifacts", "Bzip2_jll", "GnuTLS_jll", "JLLWrappers", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"]
git-tree-sha1 = "3282b7d16ae7ac3e57ec2f3fa8fafb564d8f9f7f"
uuid = "337d8026-41b4-5cde-a456-74a10e5b31d1"
version = "1.10.1+0"

[[deps.nghttp2_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d"
version = "1.52.0+1"

[[deps.oneTBB_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "7d0ea0f4895ef2f5cb83645fa689e52cb55cf493"
uuid = "1317d2d5-d96f-522e-a858-c73665f53c3e"
version = "2021.12.0+0"

[[deps.p7zip_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0"
version = "17.4.0+2"

[[deps.snappy_jll]]
deps = ["Artifacts", "JLLWrappers", "LZO_jll", "Libdl", "Zlib_jll"]
git-tree-sha1 = "ab27636e7c8222f14b9318a983fcd89cf130d419"
uuid = "fe1e1685-f7be-5f59-ac9f-4ca204017dfd"
version = "1.1.10+0"

[[deps.x264_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "35976a1216d6c066ea32cba2150c4fa682b276fc"
uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a"
version = "10164.0.0+0"

[[deps.x265_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "dcc541bb19ed5b0ede95581fb2e41ecf179527d2"
uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76"
version = "3.6.0+0"
"""

# ╔═╡ Cell order:
# ╟─71e87ed3-5a9f-49aa-99af-cf144501c678
# ╟─a58cc4b4-7023-4dcf-a5f4-6366be8047a3
# ╟─a45bbdbd-3793-4e69-b042-39a4a1ac7ed7
# ╟─62e0b8a9-0025-4ce7-9538-b6114d97b762
# ╟─c93dde18-e639-4edd-9192-f6c9eed0cb89
# ╟─0c9fdfb0-bddc-4def-9954-526978491a84
# ╟─8ff180a4-dd71-4a70-82ab-70bc80427abb
# ╟─ff7dd5eb-5b1b-4314-9553-b8c05c4d7376
# ╟─9b3c3856-9fe1-43ba-97a2-abcd5b385c1d
# ╟─1cf2cdb9-3c09-4b39-81cf-49318c16f531
# ╟─a8e0b727-a416-4aad-b660-69e5470c7e9e
# ╟─eeb9d308-ef62-4dcc-ba90-a2a1912ef2bd
# ╟─50b75406-e55f-433d-bd7b-089d975e5001
# ╟─af68228e-710c-4a5a-be48-c716592f8f45
# ╟─aa82d9bd-8ba2-4e18-8f65-e71b0361f5cb
# ╟─24a9fc25-b85b-4582-a36b-0a43e04ee799
# ╟─5fec1029-34a1-4d43-9183-7e6095194a3a
# ╟─ec8cbf44-82d9-11ed-0131-1bdea9285f79
# ╠═8fbd1b1d-affe-4e30-a3b2-f2584e459003
# ╟─2d5611a9-b8ea-4d26-8ca3-edff9f2ebfdd
# ╟─00000000-0000-0000-0000-000000000001
# ╟─00000000-0000-0000-0000-000000000002