@prefix ont: <https://Junjingw.github.io/bacteria-ontologia#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix dc: <http://purl.org/dc/elements/1.1/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix foaf: <http://xmlns.com/foaf/0.1/> .

<https://Junjingw.github.io/bacteria-ontologia#> a owl:Ontology ;
    dc:title "Ontology of Bacteria and Antibiotic Resistance Genes (ARGs)" .

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# Main Classes
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# Class: Bacteria
ont:Bacteria a owl:Class ;
    rdfs:comment "Represents a bacterial organism"@en ;
    rdfs:subClassOf owl:Thing .

# Class: ARG (Antibiotic Resistance Gene)
ont:ARG a owl:Class ;
    rdfs:comment "A gene that confers resistance to one or more antibiotics"@en ;
    rdfs:subClassOf owl:Thing .

# Class: Antibiotic
ont:Antibiotic a owl:Class ;
    rdfs:comment "A substance used to inhibit bacterial growth or destroy bacteria"@en ;
    rdfs:subClassOf owl:Thing .

# Class: Mutation
ont:Mutation a owl:Class ;
    rdfs:label "Mutation"@en ;
    rdfs:comment "Represents a mutation occurring in a bacterium linked to an ARG"@en ;
    rdfs:subClassOf owl:Thing .

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# Object Properties
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# Property: hasMutation
ont:hasMutation a owl:ObjectProperty ;
    rdfs:comment "Relates a bacterium to the mutations it contains"@en ;
    rdfs:domain ont:Bacteria ;
    rdfs:range ont:Mutation ;
    owl:inverseOf ont:occursIn .

# Property: linkedToARG (Linked to ARG)
ont:linkedToARG a owl:ObjectProperty ;
    rdfs:comment "Relates a Mutation to the ARG it represents"@en ;
    rdfs:domain ont:Mutation ;
    rdfs:range ont:ARG ;
    owl:inverseOf ont:hasMutationARG .

# Property: resistantTo (Resistance to Antibiotic)
ont:resistantTo a owl:ObjectProperty ;
    rdfs:comment "Relates an ARG to the antibiotics it resists"@en ;
    rdfs:domain ont:ARG ;
    rdfs:range ont:Antibiotic .

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# Data Properties
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# Property: frequency (Frequency of Mutation)
ont:frequency a owl:DatatypeProperty ;
    rdfs:label "frequency"@en ;
    rdfs:comment "The frequency of occurrence of a mutation in a bacterial population"@en ;
    rdfs:domain ont:Mutation ;
    rdfs:range xsd:float .

# Property: hasSign
ont:hasSign a owl:DatatypeProperty ;
    rdfs:comment "Physical or physiological indications of a disease caused by bacteria"@en ;
    rdfs:domain ont:Bacteria ;
    rdfs:range xsd:string .

ont:taxonId a owl:DatatypeProperty ;
    rdfs:comment "An integer identifier for the taxonomic classification of the bacteria"@en ;
    rdfs:domain ont:Bacteria ;
    rdfs:range xsd:int .