#Chromosome	Start	Stop	TEID	Score	Strand	SubFamily	Family	SuperFamily	Length	LengthCategory	Copy#	Copy#Category	DistanceFromCentromere	LocationCategory	GeneDistance	TE-silent_RdDM	TE-active_RdDM	Expression	TranscriptionalStartSite	TranscriptionalStopSite	TranscriptionalStrand	TranscriptID
Chr1	11896	11976	AT1TE00010	.	+	ATCOPIA24	Copia	LTR	80	tiny	27	low	14499746	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	16882	17009	AT1TE00020	.	-	ATREP4	Helitron	RC	127	short	832	high	14494713	chromoarm	3942	no-CHH	no-RdDM	.	.	.	.	.
Chr1	17023	18924	AT1TE00025	.	+	ATREP3	Helitron	RC	1901	short	1439	high	14492798	chromoarm	4083	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	18330	18642	AT1TE00030	.	-	ATHATN7	HAT	DNA	312	short	71	medium	14493080	chromoarm	4876	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	55675	56576	AT1TE00150	.	+	SIMPLEHAT1	HAT	DNA	901	short	56	medium	14455146	chromoarm	47	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	76843	77500	AT1TE00220	.	+	TA11	L1	LINE	657	short	157	medium	14434222	chromoarm	287	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	78287	78785	AT1TE00225	.	-	HELITRONY1D	Helitron	RC	498	short	756	high	14432937	chromoarm	1731	no-CHH	no-CHH	.	.	.	.	.
Chr1	154330	154418	AT1TE00470	.	-	ATLINE1_3A	L1	LINE	88	tiny	160	medium	14357304	chromoarm	132	no-CHH	no-CHH	.	.	.	.	.
Chr1	193673	194263	AT1TE00600	.	-	ATREP5	Helitron	RC	590	short	624	high	14317459	chromoarm	11	no-CHH	no-CHH	.	.	.	.	.
Chr1	194263	194300	AT1TE00605	.	-	ATREP3	Helitron	RC	37	tiny	1439	high	14317422	chromoarm	601	no-CHH	no-CHH	.	.	.	.	.
Chr1	194300	194336	AT1TE00610	.	-	ATREP4	Helitron	RC	36	tiny	832	high	14317386	chromoarm	638	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr1	208029	208051	AT1TE00660	.	+	ATDNA2T9C	MuDR	DNA	22	tiny	242	high	14303671	chromoarm	594	no-CHH	no-CHH	.	.	.	.	.
Chr1	208051	208550	AT1TE00665	.	+	ATREP11	Helitron	RC	499	short	841	high	14303172	chromoarm	616	no-CHH	no-CHH	.	.	.	.	.
Chr1	208550	209163	AT1TE00670	.	+	HELITRONY1E	Helitron	RC	613	short	447	high	14302559	chromoarm	231	no-CHH	no-CHH	.	.	.	.	.
Chr1	213761	214159	AT1TE00680	.	+	ATDNA2T9C	MuDR	DNA	398	short	242	high	14297563	chromoarm	69	no-CHH	no-CHH	.	.	.	.	.
Chr1	255711	256074	AT1TE00820	.	-	HELITRONY3	Helitron	RC	363	short	1399	high	14255648	chromoarm	1216	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	256074	256920	AT1TE00825	.	-	ATHPOGON3	Pogo	DNA	846	short	118	medium	14254802	chromoarm	1579	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	256920	256967	AT1TE00830	.	+	BRODYAGA2	MuDR	DNA	47	tiny	525	high	14254755	chromoarm	2425	no-CHH	no-CHH	.	.	.	.	.
Chr1	257687	257709	AT1TE00835	.	+	AT9NMU1	MuDR	DNA	23	tiny	45	low	14254013	chromoarm	1785	.	.	.	.	.	.	.
Chr1	257709	258629	AT1TE00840	.	-	AT9NMU1	MuDR	DNA	920	short	45	low	14253093	chromoarm	865	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	258629	258712	AT1TE00845	.	-	AT9NMU1	MuDR	DNA	83	tiny	45	low	14253010	chromoarm	782	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	309295	309351	AT1TE01010	.	-	ATLINEIII	L1	LINE	56	tiny	196	medium	14202371	chromoarm	304	no-CHH	no-CHH	.	.	.	.	.
Chr1	349927	349969	AT1TE01140	.	-	ATGP2	Gypsy	LTR	42	tiny	48	low	14161753	chromoarm	0	no-RdDM	no-CHH	.	.	.	.	.
Chr1	349971	350037	AT1TE01145	.	-	ATGP2	Gypsy	LTR	66	tiny	48	low	14161685	chromoarm	0	no-RdDM	no-CHH	.	.	.	.	.
Chr1	354367	354750	AT1TE01155	.	-	ATENSPM6	En-Spm	DNA	383	short	151	medium	14156972	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	422673	424055	AT1TE01370	.	+	ARNOLDY1	MuDR	DNA	1382	short	237	high	14087667	chromoarm	519	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	431309	431469	AT1TE01390	.	+	TAG2	HAT	DNA	160	short	86	medium	14080253	chromoarm	742	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	431473	431916	AT1TE01395	.	-	SIMPLEGUY1	Harbinger	DNA	443	short	116	medium	14079806	chromoarm	906	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	431916	432073	AT1TE01400	.	+	TAG2	HAT	DNA	157	short	86	medium	14079649	chromoarm	1349	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	432994	433837	AT1TE01405	.	-	ATLINE1A	L1	LINE	843	short	289	high	14077885	chromoarm	1336	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	460799	461652	AT1TE01490	.	-	ATREP15	Helitron	RC	853	short	1003	high	14050070	chromoarm	147	no-CHH	no-CHH	.	.	.	.	.
Chr1	474081	474176	AT1TE01530	.	+	TSCL	.	LINE?	96	tiny	81	medium	14037546	chromoarm	339	.	.	.	.	.	.	.
Chr1	499076	499134	AT1TE01610	.	-	HELITRONY3	Helitron	RC	58	tiny	1399	high	14012588	chromoarm	596	no-CHH	no-CHH	.	.	.	.	.
Chr1	499134	501371	AT1TE01615	.	-	ATREP3	Helitron	RC	2237	medium	1439	high	14010351	chromoarm	654	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	501371	501635	AT1TE01620	.	-	ATREP3	Helitron	RC	264	short	1439	high	14010087	chromoarm	2891	no-CHH	no-CHH	.	.	.	.	.
Chr1	501635	501971	AT1TE01625	.	+	ATREP10D	Helitron	RC	336	short	1295	high	14009751	chromoarm	2925	no-CHH	no-CHH	.	.	.	.	.
Chr1	512670	512692	AT1TE01660	.	+	ATMU3N1	MuDR	DNA	22	tiny	19	low	13999030	chromoarm	0	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	512692	513136	AT1TE01665	.	-	ATMU3N1	MuDR	DNA	444	short	19	low	13998586	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	529160	529576	AT1TE01710	.	+	HELITRON4	Helitron	RC	416	short	199	medium	13982146	chromoarm	259	no-CHH	no-CHH	.	.	.	.	.
Chr1	537237	537593	AT1TE01740	.	+	ATREP4	Helitron	RC	356	short	832	high	13974129	chromoarm	26	no-CHH	no-CHH	.	.	.	.	.
Chr1	540268	540416	AT1TE01745	.	-	ATREP14	Helitron	RC	148	short	47	low	13971306	chromoarm	463	no-CHH	no-CHH	.	.	.	.	.
Chr1	540416	540985	AT1TE01750	.	-	ATREP2	Helitron	RC	569	short	164	medium	13970737	chromoarm	394	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	540985	541195	AT1TE01755	.	-	HELITRONY1A	Helitron	RC	210	short	271	high	13970527	chromoarm	184	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	543980	544642	AT1TE01760	.	+	ATREP1	Helitron	RC	662	short	498	high	13967080	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	559301	559557	AT1TE01810	.	+	ATTIRTA1	Tc1	DNA	256	short	95	medium	13952165	chromoarm	1449	no-CHH	no-CHH	.	.	.	.	.
Chr1	587268	587326	AT1TE01900	.	+	ATREP10D	Helitron	RC	58	tiny	1295	high	13924396	chromoarm	232	no-CHH	no-CHH	.	.	.	.	.
Chr1	587326	587409	AT1TE01905	.	+	ATREP4	Helitron	RC	83	tiny	832	high	13924313	chromoarm	290	no-CHH	no-CHH	.	.	.	.	.
Chr1	587409	588054	AT1TE01910	.	-	ATREP2	Helitron	RC	645	short	164	medium	13923668	chromoarm	312	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	588054	588182	AT1TE01915	.	+	ATREP5	Helitron	RC	128	short	624	high	13923540	chromoarm	184	no-CHH	no-CHH	.	.	.	.	.
Chr1	588182	588231	AT1TE01920	.	+	ATREP4	Helitron	RC	49	tiny	832	high	13923491	chromoarm	135	no-CHH	no-CHH	.	.	.	.	.
Chr1	604399	604453	AT1TE01970	.	+	ATLINEIII	L1	LINE	54	tiny	196	medium	13907269	chromoarm	265	no-RdDM	no-CHH	.	.	.	.	.
Chr1	606709	607198	AT1TE01975	.	-	ATREP4	Helitron	RC	489	short	832	high	13904524	chromoarm	85	no-CHH	no-CHH	.	.	.	.	.
Chr1	607198	607224	AT1TE01980	.	-	ATREP4	Helitron	RC	26	tiny	832	high	13904498	chromoarm	574	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	609512	610347	AT1TE01985	.	+	ATREP5	Helitron	RC	835	short	624	high	13901375	chromoarm	121	no-CHH	no-CHH	.	.	.	.	.
Chr1	634245	634464	AT1TE02060	.	+	RP1_AT	.	DNA	219	short	87	medium	13877258	chromoarm	1009	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	638899	639129	AT1TE02070	.	-	ATREP10B	Helitron	RC	230	short	491	high	13872593	chromoarm	296	no-CHH	no-CHH	.	.	.	.	.
Chr1	639129	641133	AT1TE02075	.	+	ARNOLDY1	MuDR	DNA	2004	medium	237	high	13870589	chromoarm	526	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	641276	641420	AT1TE02080	.	+	ARNOLDY1	MuDR	DNA	144	short	237	high	13870302	chromoarm	1642	no-CHH	no-CHH	.	.	.	.	.
Chr1	664382	664538	AT1TE02160	.	-	META1	Copia	LTR	156	short	138	medium	13847184	chromoarm	254	no-CHH	no-CHH	.	.	.	.	.
Chr1	664538	664905	AT1TE02165	.	+	ATREP10B	Helitron	RC	367	short	491	high	13846817	chromoarm	402	no-CHH	no-CHH	.	.	.	.	.
Chr1	669866	670631	AT1TE02175	.	-	ATREP11	Helitron	RC	765	short	841	high	13841091	chromoarm	93	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	672778	673137	AT1TE02180	.	-	HELITRONY2	Helitron	RC	359	short	198	medium	13838585	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	676494	677066	AT1TE02190	.	+	ATREP9	Helitron	RC	572	short	201	high	13834656	chromoarm	367	no-CHH	no-CHH	.	.	.	.	.
Chr1	677066	677162	AT1TE02195	.	+	ATREP4	Helitron	RC	96	tiny	832	high	13834560	chromoarm	706	no-CHH	no-CHH	.	.	.	.	.
Chr1	677162	677290	AT1TE02200	.	-	HELITRONY1D	Helitron	RC	128	short	756	high	13834432	chromoarm	578	no-CHH	no-CHH	.	.	.	.	.
Chr1	696358	696446	AT1TE02260	.	-	ATREP2A	Helitron	RC	88	tiny	116	medium	13815276	chromoarm	170	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	696446	697372	AT1TE02265	.	-	ATREP1	Helitron	RC	926	short	498	high	13814350	chromoarm	258	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	697386	697951	AT1TE02270	.	+	ATREP10D	Helitron	RC	565	short	1295	high	13813771	chromoarm	255	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	697951	698088	AT1TE02275	.	+	HELITRONY3	Helitron	RC	137	short	1399	high	13813634	chromoarm	118	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	726694	726837	AT1TE02360	.	-	ATENSPM1A	En-Spm	DNA	143	short	77	medium	13784885	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	728984	729267	AT1TE02365	.	-	ATREP11	Helitron	RC	283	short	841	high	13782455	chromoarm	880	no-CHH	no-CHH	.	.	.	.	.
Chr1	758409	758534	AT1TE02460	.	+	HELITRONY1A	Helitron	RC	125	short	271	high	13753188	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	758534	760505	AT1TE02465	.	+	ATREP5	Helitron	RC	1971	short	624	high	13751217	chromoarm	93	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	759136,759136	759335,759439	+,+	transcript_id-"70987e68-a9f8-4ad1-a7bf-4b2fc8f0be24|3",transcript_id-"96afd37c-e938-4130-8165-4bb0537e7beb|11"
Chr1	760505	760660	AT1TE02470	.	+	ATREP3	Helitron	RC	155	short	1439	high	13751062	chromoarm	660	no-CHH	no-CHH	.	.	.	.	.
Chr1	781193	782748	AT1TE02540	.	-	ATREP15	Helitron	RC	1555	short	1003	high	13728974	chromoarm	69	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	782748	782943	AT1TE02545	.	+	HELITRONY2	Helitron	RC	195	short	198	medium	13728779	chromoarm	4	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	782943	782971	AT1TE02550	.	+	ATREP3	Helitron	RC	28	tiny	1439	high	13728751	chromoarm	0	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	784892	784929	AT1TE02555	.	-	ATHPOGON1	Pogo	DNA	37	tiny	174	medium	13726793	chromoarm	652	no-RdDM	no-CHH	.	.	.	.	.
Chr1	784929	785447	AT1TE02560	.	+	ATHPOGON1	Pogo	DNA	518	short	174	medium	13726275	chromoarm	689	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	785447	785479	AT1TE02565	.	+	HELITRONY1D	Helitron	RC	32	tiny	756	high	13726243	chromoarm	1207	no-CHH	no-CHH	.	.	.	.	.
Chr1	821722	821763	AT1TE02680	.	-	ATREP4	Helitron	RC	41	tiny	832	high	13689959	chromoarm	495	no-CHH	no-CHH	.	.	.	.	.
Chr1	821763	821946	AT1TE02685	.	-	HELITRONY1D	Helitron	RC	183	short	756	high	13689776	chromoarm	536	no-CHH	no-CHH	.	.	.	.	.
Chr1	821946	822571	AT1TE02690	.	-	ATREP5	Helitron	RC	625	short	624	high	13689151	chromoarm	262	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	822578	822627	AT1TE02695	.	-	ATREP15	Helitron	RC	49	tiny	1003	high	13689095	chromoarm	206	no-CHH	no-CHH	.	.	.	.	.
Chr1	846663	847739	AT1TE02770	.	+	SADHU	.	Unassigned	1076	short	16	low	13663983	chromoarm	89	no-CHH	no-CHH	ExpressedAndAnnotated	847713	846623	-	transcript_id-"292a6096-41e6-4f55-a4cc-4275a773e68e|4"
Chr1	882329	882554	AT1TE02880	.	+	VANDAL17	MuDR	DNA	225	short	178	medium	13629168	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	903046	903474	AT1TE02950	.	-	ATREP19	.	DNA	428	short	189	medium	13608248	chromoarm	374	no-CHH	no-CHH	.	.	.	.	.
Chr1	912338	913217	AT1TE02980	.	+	ATREP15	Helitron	RC	879	short	1003	high	13598505	chromoarm	579	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	913217	913345	AT1TE02985	.	-	BRODYAGA2	MuDR	DNA	128	short	525	high	13598377	chromoarm	876	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	921829	923363	AT1TE03010	.	+	ATREP10D	Helitron	RC	1534	short	1295	high	13588359	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	934883	935351	AT1TE03050	.	-	ATMU6N1	MuDR	DNA	468	short	39	low	13576371	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	943764	944176	AT1TE03080	.	-	HELITRONY3	Helitron	RC	412	short	1399	high	13567546	chromoarm	444	no-CHH	no-CHH	.	.	.	.	.
Chr1	971938	972418	AT1TE03170	.	-	ATREP10B	Helitron	RC	480	short	491	high	13539304	chromoarm	1880	no-CHH	no-CHH	.	.	.	.	.
Chr1	974402	974811	AT1TE03175	.	-	BRODYAGA1A	MuDR	DNA	409	short	586	high	13536911	chromoarm	1616	no-CHH	no-RdDM	.	.	.	.	.
Chr1	974811	974873	AT1TE03180	.	+	BRODYAGA1A	MuDR	DNA	62	tiny	586	high	13536849	chromoarm	1554	no-CHH	no-CHH	.	.	.	.	.
Chr1	976607	976643	AT1TE03185	.	+	ATREP5	Helitron	RC	36	tiny	624	high	13535079	chromoarm	0	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr1	976643	977202	AT1TE03190	.	+	BRODYAGA2	MuDR	DNA	559	short	525	high	13534520	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	977202	977233	AT1TE03195	.	+	ATREP5	Helitron	RC	31	tiny	624	high	13534489	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	1157762	1157863	AT1TE03780	.	+	LIMPET1	MuDR	DNA	101	short	116	medium	13353859	chromoarm	637	no-CHH	no-CHH	.	.	.	.	.
Chr1	1160068	1161330	AT1TE03785	.	+	ATREP11A	Helitron	RC	1262	short	95	medium	13350392	chromoarm	253	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	1161330	1161548	AT1TE03790	.	+	HELITRONY1D	Helitron	RC	218	short	756	high	13350174	chromoarm	35	no-CHH	no-CHH	.	.	.	.	.
Chr1	1174433	1174891	AT1TE03830	.	-	HELITRONY3	Helitron	RC	458	short	1399	high	13336831	chromoarm	285	no-CHH	no-CHH	.	.	.	.	.
Chr1	1174891	1174958	AT1TE03835	.	+	HELITRONY1D	Helitron	RC	67	tiny	756	high	13336764	chromoarm	218	no-CHH	no-CHH	.	.	.	.	.
Chr1	1184969	1185352	AT1TE03860	.	-	ATHPOGON1	Pogo	DNA	383	short	174	medium	13326370	chromoarm	366	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	1185352	1185394	AT1TE03865	.	-	ATREP1	Helitron	RC	42	tiny	498	high	13326328	chromoarm	324	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr1	1185394	1185428	AT1TE03870	.	-	BRODYAGA1A	MuDR	DNA	34	tiny	586	high	13326294	chromoarm	290	no-RdDM	no-CHH	.	.	.	.	.
Chr1	1194344	1195166	AT1TE03900	.	+	ATREP10D	Helitron	RC	822	short	1295	high	13316556	chromoarm	645	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	1194167	1196929	+	transcript_id-"e45e7420-7492-44b2-a5da-e70ad5fba4c7|8"
Chr1	1197068	1197444	AT1TE03905	.	-	VANDALNX2	MuDR	DNA	376	short	37	low	13314278	chromoarm	1415	no-CHH	no-CHH	.	.	.	.	.
Chr1	1201615	1202034	AT1TE03915	.	-	ATDNA2T9C	MuDR	DNA	419	short	242	high	13309688	chromoarm	314	no-CHH	no-CHH	.	.	.	.	.
Chr1	1205704	1205739	AT1TE03925	.	-	ATREP5	Helitron	RC	35	tiny	624	high	13305983	chromoarm	40	no-CHH	no-CHH	.	.	.	.	.
Chr1	1205739	1206603	AT1TE03930	.	+	ATREP3	Helitron	RC	864	short	1439	high	13305119	chromoarm	75	no-CHH	no-CHH	.	.	.	.	.
Chr1	1206603	1207093	AT1TE03935	.	+	ATREP15	Helitron	RC	490	short	1003	high	13304629	chromoarm	250	no-CHH	no-CHH	.	.	.	.	.
Chr1	1251629	1251772	AT1TE04080	.	-	ATREP12	Helitron	RC	143	short	22	low	13259950	chromoarm	439	no-CHH	no-CHH	.	.	.	.	.
Chr1	1275326	1275794	AT1TE04160	.	-	ATREP7	Helitron	RC	468	short	164	medium	13235928	chromoarm	2950	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	1275794	1276621	AT1TE04165	.	-	ATREP7	Helitron	RC	827	short	164	medium	13235101	chromoarm	2902	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	1276622	1276966	AT1TE04170	.	-	ATREP6	Helitron	RC	344	short	181	medium	13234756	chromoarm	2557	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr1	1286381	1286558	AT1TE04200	.	-	ATENSPM1A	En-Spm	DNA	177	short	77	medium	13225164	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	1286662	1287069	AT1TE04205	.	+	ATREP5	Helitron	RC	407	short	624	high	13224653	chromoarm	170	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	1293503	1293596	AT1TE04220	.	+	SIMPLEHAT2	HAT	DNA	93	tiny	73	medium	13218126	chromoarm	255	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	1379289	1380001	AT1TE04500	.	+	ATREP5	Helitron	RC	712	short	624	high	13131721	chromoarm	1025	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	1383409	1383734	AT1TE04510	.	+	ATREP1	Helitron	RC	325	short	498	high	13127988	chromoarm	177	no-CHH	no-CHH	.	.	.	.	.
Chr1	1417568	1417699	AT1TE04620	.	+	ATDNA1T9A	MuDR	DNA	131	short	36	low	13094023	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	1430271	1430424	AT1TE04660	.	-	TAG2	HAT	DNA	153	short	86	medium	13081298	chromoarm	994	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	1430437	1430836	AT1TE04665	.	+	SIMPLEGUY1	Harbinger	DNA	400	short	116	medium	13080886	chromoarm	582	.	.	.	.	.	.	.
Chr1	1430837	1430859	AT1TE04670	.	+	SIMPLEGUY1	Harbinger	DNA	23	tiny	116	medium	13080863	chromoarm	559	.	.	.	.	.	.	.
Chr1	1430868	1431028	AT1TE04675	.	-	TAG2	HAT	DNA	160	short	86	medium	13080694	chromoarm	390	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	1441514	1441645	AT1TE04700	.	+	ATDNAI27T9A	MuDR	DNA	131	short	116	medium	13070077	chromoarm	129	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	1441646	1441670	AT1TE04705	.	+	VANDAL5	MuDR	DNA	25	tiny	85	medium	13070052	chromoarm	260	.	.	.	.	.	.	.
Chr1	1441740	1442976	AT1TE04710	.	+	ATDNAI27T9B	MuDR	DNA	1236	short	43	low	13068746	chromoarm	355	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	1442976	1443007	AT1TE04715	.	+	ATDNAI27T9B	MuDR	DNA	31	tiny	43	low	13068715	chromoarm	1591	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	1443561	1443971	AT1TE04720	.	+	ATDNAI27T9C	MuDR	DNA	410	short	108	medium	13067751	chromoarm	2176	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	1444363	1444532	AT1TE04725	.	+	ATDNAI27T9B	MuDR	DNA	169	short	43	low	13067190	chromoarm	2978	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	1476477	1476716	AT1TE04830	.	+	ATDNATA1	Mariner	DNA	239	short	28	low	13035006	chromoarm	410	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	1477672	1478083	AT1TE04835	.	-	ATGP1	Gypsy	LTR	411	short	144	medium	13033639	chromoarm	839	no-CHH	no-CHH	ExpressedAndAnnotated	1477892	1477465	-	transcript_id-"6be87760-d942-4293-833a-38050ee46c6a|8"
Chr1	1478083	1478455	AT1TE04840	.	-	ATGP1	Gypsy	LTR	372	short	144	medium	13033267	chromoarm	467	no-CHH	no-CHH	.	.	.	.	.
Chr1	1501822	1502307	AT1TE04920	.	-	BRODYAGA2	MuDR	DNA	485	short	525	high	13009415	chromoarm	47	no-CHH	no-CHH	.	.	.	.	.
Chr1	1518864	1519729	AT1TE04970	.	+	ATREP10B	Helitron	RC	865	short	491	high	12991993	chromoarm	1472	no-CHH	no-CHH	.	.	.	.	.
Chr1	1519729	1519773	AT1TE04975	.	+	HELITRONY3	Helitron	RC	44	tiny	1399	high	12991949	chromoarm	1428	no-CHH	no-CHH	.	.	.	.	.
Chr1	1519773	1520005	AT1TE04980	.	-	ATREP3	Helitron	RC	232	short	1439	high	12991717	chromoarm	1196	no-CHH	no-CHH	.	.	.	.	.
Chr1	1520194	1520367	AT1TE04985	.	-	ATHILA	Gypsy	LTR	173	short	198	medium	12991355	chromoarm	834	no-CHH	no-CHH	.	.	.	.	.
Chr1	1522503	1522667	AT1TE04990	.	-	ATHAT10	HAT	DNA	164	short	35	low	12989055	chromoarm	56	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	1522667	1522770	AT1TE04995	.	-	ATHATN10	HAT	DNA	103	short	48	low	12988952	chromoarm	220	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	1522770	1522971	AT1TE05000	.	-	ATHATN10	HAT	DNA	201	short	48	low	12988751	chromoarm	323	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	1573301	1573550	AT1TE05170	.	+	HELITRONY1A	Helitron	RC	249	short	271	high	12938172	chromoarm	1021	no-CHH	no-CHH	.	.	.	.	.
Chr1	1589342	1589856	AT1TE05220	.	+	ATREP11	Helitron	RC	514	short	841	high	12921866	chromoarm	216	no-CHH	no-CHH	.	.	.	.	.
Chr1	1592655	1593745	AT1TE05225	.	+	HELITRONY3	Helitron	RC	1090	short	1399	high	12917977	chromoarm	481	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	1613271	1614662	AT1TE05280	.	-	ATREP16	MuDR	DNA	1391	short	47	low	12897060	chromoarm	1980	PolIV-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr1	1676341	1676363	AT1TE05480	.	+	HELITRONY1D	Helitron	RC	22	tiny	756	high	12835359	chromoarm	407	no-CHH	no-CHH	.	.	.	.	.
Chr1	1676363	1677158	AT1TE05485	.	+	ARNOLDY2	MuDR	DNA	795	short	288	high	12834564	chromoarm	348	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	1677158	1677359	AT1TE05490	.	+	ATREP11	Helitron	RC	201	short	841	high	12834363	chromoarm	147	no-CHH	no-CHH	.	.	.	.	.
Chr1	1705284	1705374	AT1TE05580	.	+	HELITRONY1D	Helitron	RC	90	tiny	756	high	12806348	chromoarm	645	no-CHH	no-CHH	.	.	.	.	.
Chr1	1705374	1706660	AT1TE05585	.	+	ATREP11	Helitron	RC	1286	short	841	high	12805062	chromoarm	735	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	1706660	1706725	AT1TE05590	.	-	ATREP15	Helitron	RC	65	tiny	1003	high	12804997	chromoarm	1083	no-CHH	no-CHH	.	.	.	.	.
Chr1	1738943	1739205	AT1TE05700	.	+	TA11	L1	LINE	262	short	157	medium	12772517	chromoarm	1578	no-RdDM	no-CHH	.	.	.	.	.
Chr1	1791741	1791914	AT1TE05870	.	+	VANDAL1	MuDR	DNA	173	short	80	medium	12719808	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	1840653	1841049	AT1TE06030	.	-	BRODYAGA2	MuDR	DNA	396	short	525	high	12670673	chromoarm	2611	no-CHH	no-CHH	.	.	.	.	.
Chr1	1850785	1851269	AT1TE06060	.	+	ATREP19	.	DNA	484	short	189	medium	12660453	chromoarm	260	no-CHH	no-CHH	.	.	.	.	.
Chr1	1876437	1876508	AT1TE06140	.	-	ARNOLD3	MuDR	DNA	71	tiny	45	low	12635214	chromoarm	0	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	1899518	1899767	AT1TE06220	.	-	ATCOPIA69	Copia	LTR	249	short	25	low	12611955	chromoarm	532	no-CHH	no-CHH	.	.	.	.	.
Chr1	1937509	1938638	AT1TE06340	.	+	ATREP15	Helitron	RC	1129	short	1003	high	12573084	chromoarm	534	no-CHH	no-CHH	.	.	.	.	.
Chr1	1938638	1938678	AT1TE06345	.	-	ATREP3	Helitron	RC	40	tiny	1439	high	12573044	chromoarm	494	no-CHH	no-CHH	.	.	.	.	.
Chr1	1974795	1974853	AT1TE06460	.	-	HELITRONY1C	Helitron	RC	58	tiny	120	medium	12536869	chromoarm	522	no-CHH	no-CHH	.	.	.	.	.
Chr1	1974853	1975397	AT1TE06465	.	+	ATREP5	Helitron	RC	544	short	624	high	12536325	chromoarm	580	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	1975441	1976072	AT1TE06470	.	+	ATHATN7	HAT	DNA	631	short	71	medium	12535650	chromoarm	1168	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	1976072	1976109	AT1TE06475	.	-	ATREP10D	Helitron	RC	37	tiny	1295	high	12535613	chromoarm	1799	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	1976109	1977174	AT1TE06480	.	-	ATREP3	Helitron	RC	1065	short	1439	high	12534548	chromoarm	1587	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	1977174	1977358	AT1TE06485	.	+	ATREP4	Helitron	RC	184	short	832	high	12534364	chromoarm	1403	no-CHH	no-CHH	.	.	.	.	.
Chr1	2002043	2002241	AT1TE06560	.	-	VANDAL17	MuDR	DNA	198	short	178	medium	12509481	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	2029751	2031696	AT1TE06650	.	+	ATIS112A	Harbinger	DNA	1945	short	173	medium	12480026	chromoarm	0	no-CHH	no-CHH	ExpressedAndAnnotated	2029993	2031363	+	transcript_id-"e9be1eb9-2b5f-437c-bbe3-7a0915549f63|3"
Chr1	2030568	2030715	AT1TE06655	.	+	ATIS112A	Harbinger	DNA	147	short	173	medium	12481007	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	2055312	2055429	AT1TE06730	.	-	LIMPET1	MuDR	DNA	117	short	116	medium	12456293	chromoarm	760	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	2070736	2073535	AT1TE06780	.	+	Unassigned	.	Unassigned	2799	medium	.	low	12438187	chromoarm	346	no-CHH	no-CHH	ExpressedAndAnnotated	2070736	2073531	+	transcript_id-"82ccb09f-277f-4cf3-a861-a6167ddaa79b|7"
Chr1	2157094	2157660	AT1TE07050	.	+	ATCOPIA58	Copia	LTR	566	short	18	low	12354062	chromoarm	0	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	2188894	2189266	AT1TE07150	.	-	BRODYAGA1A	MuDR	DNA	372	short	586	high	12322456	chromoarm	484	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	2191158	2191271	AT1TE07155	.	+	HELITRONY1D	Helitron	RC	113	short	756	high	12320451	chromoarm	534	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	2191271	2191794	AT1TE07160	.	+	ATREP3	Helitron	RC	523	short	1439	high	12319928	chromoarm	565	no-CHH	no-CHH	.	.	.	.	.
Chr1	2191794	2191972	AT1TE07165	.	+	ATREP10D	Helitron	RC	178	short	1295	high	12319750	chromoarm	387	no-CHH	no-CHH	.	.	.	.	.
Chr1	2199211	2199584	AT1TE07180	.	-	VANDAL5A	MuDR	DNA	373	short	56	medium	12312138	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	2234188	2234361	AT1TE07290	.	+	ATHATN7	HAT	DNA	174	short	71	medium	12277361	chromoarm	1290	.	.	.	.	.	.	.
Chr1	2234362	2234388	AT1TE07295	.	-	ATREP3	Helitron	RC	27	tiny	1439	high	12277334	chromoarm	1464	.	.	.	.	.	.	.
Chr1	2234388	2235176	AT1TE07300	.	-	ATREP3	Helitron	RC	788	short	1439	high	12276546	chromoarm	1491	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	2235176	2235231	AT1TE07305	.	-	ATREP3	Helitron	RC	55	tiny	1439	high	12276491	chromoarm	2279	no-CHH	no-CHH	.	.	.	.	.
Chr1	2253786	2254643	AT1TE07360	.	-	ATREP15	Helitron	RC	857	short	1003	high	12257079	chromoarm	201	no-CHH	no-CHH	.	.	.	.	.
Chr1	2254643	2254722	AT1TE07365	.	-	ATREP4	Helitron	RC	79	tiny	832	high	12257000	chromoarm	150	no-CHH	no-CHH	.	.	.	.	.
Chr1	2285665	2286032	AT1TE07460	.	+	ATDNA2T9C	MuDR	DNA	367	short	242	high	12225690	chromoarm	403	no-CHH	no-CHH	.	.	.	.	.
Chr1	2335042	2335717	AT1TE07620	.	-	ATREP3	Helitron	RC	675	short	1439	high	12176005	chromoarm	931	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	2335261	2335495	AT1TE07625	.	-	ATTIRTA1	Tc1	DNA	234	short	95	medium	12176227	chromoarm	1153	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	2374979	2375519	AT1TE07750	.	-	HELITRONY1D	Helitron	RC	540	short	756	high	12136203	chromoarm	542	no-CHH	no-CHH	.	.	.	.	.
Chr1	2383161	2383320	AT1TE07780	.	-	ATTIRX1D	.	DNA	159	short	28	low	12128402	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	2415019	2416036	AT1TE07880	.	+	ATLINE1_1	L1	LINE	1017	short	61	medium	12095686	chromoarm	225	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	2444683	2444851	AT1TE07970	.	+	ATGP8	Gypsy	LTR	168	short	92	medium	12066871	chromoarm	560	no-CHH	no-CHH	ExpressedAndAnnotated	2444077	2445128	+	transcript_id-"0536d531-411f-47d7-a961-d82ec45cf62d|4"
Chr1	2461273	2462129	AT1TE08020	.	-	ATREP3	Helitron	RC	856	short	1439	high	12049593	chromoarm	815	no-CHH	no-CHH	.	.	.	.	.
Chr1	2472645	2473098	AT1TE08050	.	-	ATREP1	Helitron	RC	453	short	498	high	12038624	chromoarm	127	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	2473098	2473306	AT1TE08055	.	-	ATREP2	Helitron	RC	208	short	164	medium	12038416	chromoarm	216	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	2473306	2473421	AT1TE08060	.	+	VANDAL8	MuDR	DNA	115	short	123	medium	12038301	chromoarm	101	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	2513506	2514452	AT1TE08190	.	+	HELITRONY3	Helitron	RC	946	short	1399	high	11997270	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	2522238	2522640	AT1TE08220	.	-	ATREP3	Helitron	RC	402	short	1439	high	11989082	chromoarm	1498	no-CHH	no-CHH	.	.	.	.	.
Chr1	2526623	2526756	AT1TE08230	.	-	ATHILA7A	Gypsy	LTR	133	short	31	low	11984966	chromoarm	511	no-CHH	no-RdDM	.	.	.	.	.
Chr1	2531450	2534781	AT1TE08240	.	-	TAG2	HAT	DNA	3331	medium	86	medium	11976941	chromoarm	681	PolIV-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr1	2533899	2533947	AT1TE08245	.	-	ATHAT1	HAT	DNA	49	tiny	105	medium	11977775	chromoarm	1515	.	.	.	.	.	.	.
Chr1	2586789	2586819	AT1TE08410	.	-	ATREP15	Helitron	RC	30	tiny	1003	high	11924903	chromoarm	89	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	2586819	2587142	AT1TE08415	.	-	HELITRONY1D	Helitron	RC	323	short	756	high	11924580	chromoarm	119	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	2587142	2588427	AT1TE08420	.	-	ATREP2	Helitron	RC	1285	short	164	medium	11923295	chromoarm	442	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	2588427	2588452	AT1TE08425	.	-	ATREP2A	Helitron	RC	25	tiny	116	medium	11923270	chromoarm	541	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	2588452	2588505	AT1TE08430	.	-	ATREP2	Helitron	RC	53	tiny	164	medium	11923217	chromoarm	488	no-CHH	no-CHH	.	.	.	.	.
Chr1	2611951	2612481	AT1TE08510	.	-	BRODYAGA1A	MuDR	DNA	530	short	586	high	11899241	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	2632337	2632532	AT1TE08580	.	+	ATMU10	MuDR	DNA	195	short	87	medium	11879190	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	2657417	2657920	AT1TE08660	.	+	ATLANTYS3	Gypsy	LTR	503	short	142	medium	11853802	chromoarm	853	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	2662994	2663093	AT1TE08670	.	+	ATDNAI27T9C	MuDR	DNA	99	tiny	108	medium	11848629	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	2675838	2675952	AT1TE08710	.	+	ATDNAI27T9A	MuDR	DNA	114	short	116	medium	11835770	chromoarm	80	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	2711388	2712022	AT1TE08830	.	-	HELITRONY1D	Helitron	RC	634	short	756	high	11799700	chromoarm	678	no-CHH	no-CHH	.	.	.	.	.
Chr1	2788429	2800701	AT1TE09080	.	+	VANDAL14	MuDR	DNA	12272	long	25	low	11711021	chromoarm	104	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	2865909	2866495	AT1TE09290	.	+	ATREP1	Helitron	RC	586	short	498	high	11645227	chromoarm	950	no-CHH	no-CHH	.	.	.	.	.
Chr1	2866495	2866523	AT1TE09295	.	-	ATREP3	Helitron	RC	28	tiny	1439	high	11645199	chromoarm	922	no-CHH	no-CHH	.	.	.	.	.
Chr1	2886424	2886533	AT1TE09360	.	-	ATREP4	Helitron	RC	109	short	832	high	11625189	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	2886533	2887304	AT1TE09365	.	-	ATHPOGON3	Pogo	DNA	771	short	118	medium	11624418	chromoarm	24	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	2887304	2887328	AT1TE09370	.	+	ARNOLDY2	MuDR	DNA	24	tiny	288	high	11624394	chromoarm	0	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr1	2887328	2887590	AT1TE09375	.	-	HELITRONY3	Helitron	RC	262	short	1399	high	11624132	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	2887590	2888195	AT1TE09380	.	-	HELITRONY1D	Helitron	RC	605	short	756	high	11623527	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	2916186	2916730	AT1TE09470	.	-	HELITRONY1B	Helitron	RC	544	short	414	high	11594992	chromoarm	1012	no-CHH	no-CHH	.	.	.	.	.
Chr1	2984316	2984815	AT1TE09690	.	-	VANDAL17	MuDR	DNA	499	short	178	medium	11526907	chromoarm	134	no-CHH	no-CHH	.	.	.	.	.
Chr1	2986278	2986347	AT1TE09695	.	-	ATREP4	Helitron	RC	69	tiny	832	high	11525375	chromoarm	366	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	2986347	2986950	AT1TE09700	.	-	ATREP2	Helitron	RC	603	short	164	medium	11524772	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	2986950	2987018	AT1TE09705	.	+	VANDAL8	MuDR	DNA	68	tiny	123	medium	11524704	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	3023385	3024890	AT1TE09820	.	-	ATREP6	Helitron	RC	1505	short	181	medium	11486832	chromoarm	10	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	3068468	3069234	AT1TE09960	.	+	ATREP4	Helitron	RC	766	short	832	high	11442488	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	3073226	3075036	AT1TE09970	.	-	ATREP3	Helitron	RC	1810	short	1439	high	11436686	chromoarm	1196	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	3073311	3073623	AT1TE09975	.	+	ATHATN7	HAT	DNA	312	short	71	medium	11438099	chromoarm	1281	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	3075050	3075419	AT1TE09980	.	-	ATREP10B	Helitron	RC	369	short	491	high	11436303	chromoarm	1796	no-CHH	no-CHH	.	.	.	.	.
Chr1	3090083	3090272	AT1TE10030	.	+	ATCOPIA17	Copia	LTR	189	short	16	low	11421450	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	3109318	3109710	AT1TE10090	.	-	ATMU6N1	MuDR	DNA	392	short	39	low	11402012	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	3124789	3125010	AT1TE10140	.	-	ATLINE1_3A	L1	LINE	221	short	160	medium	11386712	chromoarm	442	no-CHH	no-CHH	.	.	.	.	.
Chr1	3140346	3140718	AT1TE10190	.	+	HELITRONY1B	Helitron	RC	372	short	414	high	11371004	chromoarm	228	no-CHH	no-CHH	.	.	.	.	.
Chr1	3224485	3224558	AT1TE10470	.	+	ATCOPIA59	Copia	LTR	73	tiny	20	low	11287164	chromoarm	34	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	3247447	3247570	AT1TE10550	.	+	HELITRONY3A	Helitron	RC	123	short	49	low	11264152	chromoarm	729	no-CHH	no-CHH	.	.	.	.	.
Chr1	3250196	3250578	AT1TE10555	.	-	ATREP11	Helitron	RC	382	short	841	high	11261144	chromoarm	1829	no-CHH	no-CHH	.	.	.	.	.
Chr1	3250578	3251485	AT1TE10560	.	+	ATREP1	Helitron	RC	907	short	498	high	11260237	chromoarm	922	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	3251485	3252211	AT1TE10565	.	+	HELITRONY3	Helitron	RC	726	short	1399	high	11259511	chromoarm	196	no-CHH	no-CHH	.	.	.	.	.
Chr1	3252264	3252343	AT1TE10570	.	-	ATDNAI27T9C	MuDR	DNA	79	tiny	108	medium	11259379	chromoarm	64	no-CHH	no-CHH	.	.	.	.	.
Chr1	3262076	3262304	AT1TE10600	.	-	ATIS112A	Harbinger	DNA	228	short	173	medium	11249418	chromoarm	445	no-CHH	no-CHH	.	.	.	.	.
Chr1	3262495	3262581	AT1TE10605	.	-	ATIS112A	Harbinger	DNA	86	tiny	173	medium	11249141	chromoarm	168	no-CHH	no-CHH	.	.	.	.	.
Chr1	3263539	3263797	AT1TE10610	.	-	ATIS112A	Harbinger	DNA	258	short	173	medium	11247925	chromoarm	79	no-CHH	no-CHH	.	.	.	.	.
Chr1	3264446	3264824	AT1TE10615	.	-	ATLINE1_6	L1	LINE	378	short	129	medium	11246898	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	3330817	3332913	AT1TE10830	.	+	ATLINE2	L1	LINE	2096	medium	138	medium	11178809	chromoarm	1011	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	3342379	3342432	AT1TE10860	.	-	ATREP10D	Helitron	RC	53	tiny	1295	high	11169290	chromoarm	885	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	3342432	3343130	AT1TE10865	.	-	ATREP13	Helitron	RC	698	short	106	medium	11168592	chromoarm	634	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	3343130	3343466	AT1TE10870	.	-	HELITRONY1D	Helitron	RC	336	short	756	high	11168256	chromoarm	298	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	3343468	3343773	AT1TE10875	.	-	ATREP3	Helitron	RC	305	short	1439	high	11167949	chromoarm	0	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	3360539	3360625	AT1TE10930	.	-	ATCOPIA78	Copia	LTR	86	tiny	24	low	11151097	chromoarm	77	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	3360625	3361316	AT1TE10935	.	-	ATCOPIA78	Copia	LTR	691	short	24	low	11150406	chromoarm	163	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	3380425	3380594	AT1TE10990	.	-	HELITRON4	Helitron	RC	169	short	199	medium	11131128	chromoarm	199	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	3380594	3381483	AT1TE10995	.	-	ATREP15	Helitron	RC	889	short	1003	high	11130239	chromoarm	249	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	3381483	3381621	AT1TE11000	.	+	ATREP6	Helitron	RC	138	short	181	medium	11130101	chromoarm	111	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	3388027	3388400	AT1TE11020	.	+	ATENSPM6	En-Spm	DNA	373	short	151	medium	11123322	chromoarm	0	no-CHH	no-CHH	ExpressedAndAnnotated	3388397	3388044	-	transcript_id-"b4ef571b-0c20-4160-b234-a4fd3c4a58a4|4"
Chr1	3413098	3413250	AT1TE11100	.	-	RP1_AT	.	DNA	152	short	87	medium	11098472	chromoarm	1053	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	3413480	3413548	AT1TE11105	.	-	HELITRONY3	Helitron	RC	68	tiny	1399	high	11098174	chromoarm	1320	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	3413548	3414889	AT1TE11110	.	+	ATREP3	Helitron	RC	1341	short	1439	high	11096833	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	3414889	3414911	AT1TE11115	.	-	HELITRONY1B	Helitron	RC	22	tiny	414	high	11096811	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	3427847	3427917	AT1TE11150	.	+	HELITRONY1A	Helitron	RC	70	tiny	271	high	11083805	chromoarm	390	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	3481708	3482018	AT1TE11330	.	-	HELITRONY1D	Helitron	RC	310	short	756	high	11029704	chromoarm	751	no-CHH	no-CHH	.	.	.	.	.
Chr1	3497679	3498873	AT1TE11380	.	-	HELITRONY1E	Helitron	RC	1194	short	447	high	11012849	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	3498873	3498959	AT1TE11385	.	-	HELITRONY1E	Helitron	RC	86	tiny	447	high	11012763	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	3498968	3498994	AT1TE11390	.	-	ATREP4	Helitron	RC	26	tiny	832	high	11012728	chromoarm	0	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	3506359	3506498	AT1TE11410	.	+	ATCOPIA68	Copia	LTR	139	short	43	low	11005224	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	3519606	3519979	AT1TE11450	.	+	BRODYAGA1A	MuDR	DNA	373	short	586	high	10991743	chromoarm	1799	no-CHH	no-CHH	.	.	.	.	.
Chr1	3526586	3527171	AT1TE11470	.	+	AT9TSD1	MuDR	DNA	585	short	55	medium	10984551	chromoarm	537	no-CHH	no-CHH	.	.	.	.	.
Chr1	3527229	3527497	AT1TE11475	.	+	BRODYAGA1A	MuDR	DNA	268	short	586	high	10984225	chromoarm	211	no-CHH	no-CHH	.	.	.	.	.
Chr1	3544312	3544749	AT1TE11530	.	-	BRODYAGA1A	MuDR	DNA	437	short	586	high	10966973	chromoarm	530	no-CHH	no-CHH	.	.	.	.	.
Chr1	3547013	3547591	AT1TE11535	.	-	BRODYAGA1	MuDR	DNA	578	short	251	high	10964131	chromoarm	2644	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	3547592	3547613	AT1TE11540	.	-	BRODYAGA1A	MuDR	DNA	22	tiny	586	high	10964109	chromoarm	2622	.	.	.	.	.	.	.
Chr1	3547613	3547648	AT1TE11545	.	-	HELITRONY1D	Helitron	RC	35	tiny	756	high	10964074	chromoarm	2587	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	3550864	3551041	AT1TE11555	.	-	ATREP9	Helitron	RC	177	short	201	high	10960681	chromoarm	296	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	3551041	3551135	AT1TE11560	.	+	ATMUN1	MuDR	DNA	94	tiny	107	medium	10960587	chromoarm	473	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	3551135	3552618	AT1TE11565	.	-	HELITRONY1A	Helitron	RC	1483	short	271	high	10959104	chromoarm	567	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	3552618	3552896	AT1TE11570	.	+	HELITRONY3	Helitron	RC	278	short	1399	high	10958826	chromoarm	1260	no-CHH	no-CHH	.	.	.	.	.
Chr1	3557470	3557938	AT1TE11580	.	-	HELITRON2	Helitron	RC	468	short	194	medium	10953784	chromoarm	484	no-CHH	no-CHH	.	.	.	.	.
Chr1	3564881	3564973	AT1TE11600	.	+	HELITRONY3	Helitron	RC	92	tiny	1399	high	10946749	chromoarm	435	no-CHH	no-CHH	.	.	.	.	.
Chr1	3564973	3565127	AT1TE11605	.	+	ATTIR16T3A	.	DNA	154	short	106	medium	10946595	chromoarm	335	no-CHH	no-CHH	.	.	.	.	.
Chr1	3573162	3573682	AT1TE11630	.	-	ATREP10B	Helitron	RC	520	short	491	high	10938040	chromoarm	96	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	3605061	3605139	AT1TE11730	.	-	ATHILA8B	Gypsy	LTR	78	tiny	78	medium	10906583	chromoarm	411	no-CHH	no-CHH	.	.	.	.	.
Chr1	3630276	3630404	AT1TE11810	.	-	ATDNAI27T9A	MuDR	DNA	128	short	116	medium	10881318	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	3672592	3673012	AT1TE11950	.	+	VANDAL5	MuDR	DNA	420	short	85	medium	10838710	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	3715118	3715209	AT1TE12090	.	-	ATLANTYS1	Gypsy	LTR	91	tiny	153	medium	10796513	chromoarm	19	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	3728504	3728801	AT1TE12130	.	+	ATTIRX1A	.	DNA	297	short	63	medium	10782921	chromoarm	338	no-CHH	no-CHH	.	.	.	.	.
Chr1	3728968	3730413	AT1TE12135	.	+	ATLINE2	L1	LINE	1445	short	138	medium	10781309	chromoarm	802	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	3757422	3758040	AT1TE12220	.	+	HELITRONY3	Helitron	RC	618	short	1399	high	10753682	chromoarm	511	no-CHH	no-CHH	.	.	.	.	.
Chr1	3761902	3762819	AT1TE12230	.	+	HELITRONY1E	Helitron	RC	917	short	447	high	10748903	chromoarm	619	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	3762819	3762974	AT1TE12235	.	+	ATREP1	Helitron	RC	155	short	498	high	10748748	chromoarm	464	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	3762974	3763156	AT1TE12240	.	+	ATREP2	Helitron	RC	182	short	164	medium	10748566	chromoarm	282	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	3770968	3771002	AT1TE12270	.	-	ATREP10D	Helitron	RC	34	tiny	1295	high	10740720	chromoarm	1262	no-CHH	no-CHH	.	.	.	.	.
Chr1	3771002	3772133	AT1TE12275	.	-	ATREP10D	Helitron	RC	1131	short	1295	high	10739589	chromoarm	1296	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	3774281	3774495	AT1TE12280	.	+	ATMUN1	MuDR	DNA	214	short	107	medium	10737227	chromoarm	2964	no-CHH	no-CHH	.	.	.	.	.
Chr1	3775142	3775241	AT1TE12285	.	+	ATMUN1	MuDR	DNA	99	tiny	107	medium	10736481	chromoarm	2218	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	3780764	3785721	AT1TE12295	.	+	ATCOPIA78	Copia	LTR	4957	medium	24	low	10726001	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	3790752	3790843	AT1TE12305	.	+	ATCOPIA46	Copia	LTR	91	tiny	7	low	10720879	chromoarm	24	no-CHH	no-CHH	.	.	.	.	.
Chr1	3790843	3790907	AT1TE12310	.	-	ATCOPIA46	Copia	LTR	64	tiny	7	low	10720815	chromoarm	115	no-CHH	no-CHH	.	.	.	.	.
Chr1	3825293	3825411	AT1TE12420	.	-	ARNOLDY1	MuDR	DNA	118	short	237	high	10686311	chromoarm	109	no-CHH	no-CHH	.	.	.	.	.
Chr1	3825411	3825780	AT1TE12425	.	-	ARNOLDY2	MuDR	DNA	369	short	288	high	10685942	chromoarm	227	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	3825780	3827697	AT1TE12430	.	-	ARNOLDY1	MuDR	DNA	1917	short	237	high	10684025	chromoarm	400	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	3827697	3827895	AT1TE12435	.	+	HELITRONY3	Helitron	RC	198	short	1399	high	10683827	chromoarm	202	no-RdDM	no-CHH	.	.	.	.	.
Chr1	3827895	3827918	AT1TE12440	.	+	ATREP11	Helitron	RC	23	tiny	841	high	10683804	chromoarm	179	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	3851179	3851787	AT1TE12520	.	-	HELITRONY1D	Helitron	RC	608	short	756	high	10659935	chromoarm	670	no-CHH	no-CHH	.	.	.	.	.
Chr1	3851787	3851943	AT1TE12525	.	+	BRODYAGA2	MuDR	DNA	156	short	525	high	10659779	chromoarm	1278	no-CHH	no-CHH	.	.	.	.	.
Chr1	3894685	3894779	AT1TE12660	.	+	ATCOPIA37	Copia	LTR	94	tiny	32	low	10616943	chromoarm	65	no-CHH	no-RdDM	.	.	.	.	.
Chr1	3895093	3897046	AT1TE12665	.	+	ATCOPIA37	Copia	LTR	1953	short	32	low	10614676	chromoarm	473	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	3897046	3897177	AT1TE12670	.	-	HELITRONY3	Helitron	RC	131	short	1399	high	10614545	chromoarm	824	no-CHH	no-CHH	.	.	.	.	.
Chr1	3897177	3898168	AT1TE12675	.	-	ATDNA2T9C	MuDR	DNA	991	short	242	high	10613554	chromoarm	0	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	3909918	3909941	AT1TE12710	.	-	BRODYAGA2	MuDR	DNA	23	tiny	525	high	10601781	chromoarm	627	no-CHH	no-CHH	.	.	.	.	.
Chr1	3909941	3910026	AT1TE12715	.	+	ATREP4	Helitron	RC	85	tiny	832	high	10601696	chromoarm	650	no-CHH	no-CHH	.	.	.	.	.
Chr1	3910026	3910701	AT1TE12720	.	-	ATREP3	Helitron	RC	675	short	1439	high	10601021	chromoarm	131	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	3910701	3910762	AT1TE12725	.	+	HELITRON4	Helitron	RC	61	tiny	199	medium	10600960	chromoarm	70	no-CHH	no-CHH	.	.	.	.	.
Chr1	3918676	3919183	AT1TE12750	.	+	ATREP5	Helitron	RC	507	short	624	high	10592539	chromoarm	154	no-CHH	no-CHH	.	.	.	.	.
Chr1	3925330	3926124	AT1TE12770	.	-	ATCOPIA30	Copia	LTR	794	short	33	low	10585598	chromoarm	983	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	3926903	3927654	AT1TE12775	.	+	HELITRONY3	Helitron	RC	751	short	1399	high	10584068	chromoarm	865	no-CHH	no-CHH	.	.	.	.	.
Chr1	3931962	3932217	AT1TE12785	.	+	ATREP19	.	DNA	255	short	189	medium	10579505	chromoarm	480	no-CHH	no-CHH	.	.	.	.	.
Chr1	3932217	3932527	AT1TE12790	.	-	DT1	Mariner	DNA	310	short	123	medium	10579195	chromoarm	735	no-CHH	no-CHH	.	.	.	.	.
Chr1	3932527	3932593	AT1TE12795	.	-	ATREP10D	Helitron	RC	66	tiny	1295	high	10579129	chromoarm	1045	no-CHH	no-CHH	.	.	.	.	.
Chr1	3932593	3932787	AT1TE12800	.	+	HELITRONY1D	Helitron	RC	194	short	756	high	10578935	chromoarm	1111	no-CHH	no-CHH	.	.	.	.	.
Chr1	3936018	3937146	AT1TE12810	.	-	ATREP3	Helitron	RC	1128	short	1439	high	10574576	chromoarm	1778	no-CHH	no-CHH	.	.	.	.	.
Chr1	3944737	3944925	AT1TE12830	.	+	BRODYAGA1A	MuDR	DNA	188	short	586	high	10566797	chromoarm	926	no-CHH	no-CHH	.	.	.	.	.
Chr1	3960451	3960517	AT1TE12880	.	+	ATENSPM10	En-Spm	DNA	66	tiny	81	medium	10551205	chromoarm	338	no-CHH	no-RdDM	.	.	.	.	.
Chr1	4015260	4015525	AT1TE13060	.	+	HARBINGER	Harbinger	DNA	265	short	90	medium	10496197	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	4071377	4071831	AT1TE13240	.	+	ATHILA6A	Gypsy	LTR	454	short	247	high	10439891	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	4071869	4072056	AT1TE13245	.	+	VANDAL1	MuDR	DNA	187	short	80	medium	10439666	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	4082293	4083025	AT1TE13270	.	-	HELITRONY1D	Helitron	RC	732	short	756	high	10428697	chromoarm	1263	no-CHH	no-CHH	.	.	.	.	.
Chr1	4090941	4091432	AT1TE13300	.	+	HELITRONY2	Helitron	RC	491	short	198	medium	10420290	chromoarm	352	no-CHH	no-CHH	.	.	.	.	.
Chr1	4093260	4093293	AT1TE13305	.	+	DT1	Mariner	DNA	33	tiny	123	medium	10418429	chromoarm	1952	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	4093293	4094494	AT1TE13310	.	-	HELITRONY3	Helitron	RC	1201	short	1399	high	10417228	chromoarm	751	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	4097905	4098872	AT1TE13320	.	+	ATREP3	Helitron	RC	967	short	1439	high	10412850	chromoarm	2060	no-CHH	no-CHH	.	.	.	.	.
Chr1	4109988	4110103	AT1TE13360	.	+	AT9NMU1	MuDR	DNA	115	short	45	low	10401619	chromoarm	698	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	4110103	4111021	AT1TE13365	.	+	AT9NMU1	MuDR	DNA	918	short	45	low	10400701	chromoarm	813	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	4111032	4111110	AT1TE13370	.	-	ARNOLDY2	MuDR	DNA	78	tiny	288	high	10400612	chromoarm	1742	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	4111110	4113062	AT1TE13375	.	+	ARNOLDY1	MuDR	DNA	1952	short	237	high	10398660	chromoarm	1820	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	4113062	4113122	AT1TE13380	.	-	ARNOLD1	MuDR	DNA	60	tiny	39	low	10398600	chromoarm	1810	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	4129816	4130189	AT1TE13430	.	+	BRODYAGA1A	MuDR	DNA	373	short	586	high	10381533	chromoarm	115	no-CHH	no-CHH	.	.	.	.	.
Chr1	4134117	4134164	AT1TE13440	.	+	ATREP11	Helitron	RC	47	tiny	841	high	10377558	chromoarm	23	no-CHH	no-CHH	.	.	.	.	.
Chr1	4134165	4134795	AT1TE13445	.	+	ATREP10B	Helitron	RC	630	short	491	high	10376927	chromoarm	71	no-CHH	no-CHH	.	.	.	.	.
Chr1	4135741	4136147	AT1TE13450	.	-	BRODYAGA2	MuDR	DNA	406	short	525	high	10375575	chromoarm	1479	no-CHH	no-CHH	.	.	.	.	.
Chr1	4136147	4137348	AT1TE13455	.	+	ATREP10B	Helitron	RC	1201	short	491	high	10374374	chromoarm	278	no-CHH	no-CHH	.	.	.	.	.
Chr1	4169822	4170537	AT1TE13560	.	+	ATREP15	Helitron	RC	715	short	1003	high	10341185	chromoarm	1567	no-CHH	no-CHH	.	.	.	.	.
Chr1	4193925	4194357	AT1TE13640	.	-	ATREP19	.	DNA	432	short	189	medium	10317365	chromoarm	315	no-CHH	no-CHH	.	.	.	.	.
Chr1	4209163	4209607	AT1TE13690	.	-	ATMU3N1	MuDR	DNA	444	short	19	low	10302115	chromoarm	321	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	4292789	4293327	AT1TE13960	.	-	HELITRONY3	Helitron	RC	538	short	1399	high	10218395	chromoarm	1555	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	4293327	4294088	AT1TE13965	.	+	HELITRONY1B	Helitron	RC	761	short	414	high	10217634	chromoarm	794	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	4294088	4294188	AT1TE13970	.	+	HELITRONY1E	Helitron	RC	100	short	447	high	10217534	chromoarm	694	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	4297982	4298477	AT1TE13980	.	+	BRODYAGA2	MuDR	DNA	495	short	525	high	10213245	chromoarm	419	no-CHH	no-CHH	.	.	.	.	.
Chr1	4311537	4311639	AT1TE14020	.	+	ATREP11	Helitron	RC	102	short	841	high	10200083	chromoarm	80	no-CHH	no-CHH	.	.	.	.	.
Chr1	4311639	4312374	AT1TE14025	.	-	HELITRONY3	Helitron	RC	735	short	1399	high	10199348	chromoarm	23	no-CHH	no-CHH	.	.	.	.	.
Chr1	4329223	4329320	AT1TE14080	.	+	ATHATN3	HAT	DNA	97	tiny	70	medium	10182402	chromoarm	899	no-CHH	no-CHH	.	.	.	.	.
Chr1	4329876	4334393	AT1TE14085	.	+	ATMU4	MuDR	DNA	4517	medium	14	low	10177329	chromoarm	281	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	4333079,4333209,4334082	4333451,4333396,4333430	+,+,-	transcript_id-"bb04346b-5c4d-44ba-a093-94d2b4142e09|3",transcript_id-"a6bf6274-6737-4ccb-afc4-1ae0a83ef81e|33",transcript_id-"6ce5767f-d846-4c7b-81b9-4d0321bb99a1|55"
Chr1	4374595	4374826	AT1TE14210	.	-	ATMU10	MuDR	DNA	231	short	87	medium	10136896	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	4381721	4382219	AT1TE14230	.	-	ATREP10A	Helitron	RC	498	short	279	high	10129503	chromoarm	3	no-CHH	no-CHH	.	.	.	.	.
Chr1	4405693	4405995	AT1TE14310	.	-	META1	Copia	LTR	302	short	138	medium	10105727	chromoarm	198	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	4405995	4411119	AT1TE14315	.	-	META1	Copia	LTR	5124	long	138	medium	10100603	chromoarm	500	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	4411119	4411234	AT1TE14320	.	-	META1	Copia	LTR	115	short	138	medium	10100488	chromoarm	1652	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	4411794	4411881	AT1TE14325	.	+	ATLINE1_3A	L1	LINE	87	tiny	160	medium	10099841	chromoarm	1005	no-CHH	no-CHH	.	.	.	.	.
Chr1	4413085	4413210	AT1TE14330	.	+	ATREP5	Helitron	RC	125	short	624	high	10098512	chromoarm	28	no-CHH	no-RdDM	.	.	.	.	.
Chr1	4413214	4414712	AT1TE14335	.	-	ATREP10D	Helitron	RC	1498	short	1295	high	10097010	chromoarm	157	no-CHH	no-RdDM	.	.	.	.	.
Chr1	4414712	4414908	AT1TE14340	.	+	ATREP15	Helitron	RC	196	short	1003	high	10096814	chromoarm	1496	no-CHH	no-CHH	.	.	.	.	.
Chr1	4414908	4414953	AT1TE14345	.	+	HELITRONY1E	Helitron	RC	45	tiny	447	high	10096769	chromoarm	1451	no-CHH	no-CHH	.	.	.	.	.
Chr1	4414958	4415610	AT1TE14350	.	+	ATREP5	Helitron	RC	652	short	624	high	10096112	chromoarm	794	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	4415610	4415742	AT1TE14355	.	+	ATREP9	Helitron	RC	132	short	201	high	10095980	chromoarm	662	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	4460812	4461312	AT1TE14500	.	+	ATREP15	Helitron	RC	500	short	1003	high	10050410	chromoarm	5	no-CHH	no-CHH	.	.	.	.	.
Chr1	4487464	4487576	AT1TE14590	.	-	VANDAL3	MuDR	DNA	112	short	177	medium	10024146	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	4493274	4493928	AT1TE14600	.	+	ATREP3	Helitron	RC	654	short	1439	high	10017794	chromoarm	996	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	4506331	4506450	AT1TE14640	.	+	ATHILA4C	Gypsy	LTR	119	short	206	high	10005272	chromoarm	770	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	4506944	4507041	AT1TE14645	.	-	ATREP11	Helitron	RC	97	tiny	841	high	10004681	chromoarm	179	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr1	4512583	4512667	AT1TE14655	.	-	ATCOPIA59	Copia	LTR	84	tiny	20	low	9999055	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	4519857	4520031	AT1TE14670	.	+	VANDAL1	MuDR	DNA	174	short	80	medium	9991691	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	4538948	4539356	AT1TE14730	.	-	BRODYAGA1A	MuDR	DNA	408	short	586	high	9972366	chromoarm	3029	no-CHH	no-CHH	.	.	.	.	.
Chr1	4546278	4546388	AT1TE14750	.	+	ARNOLD2	MuDR	DNA	110	short	68	medium	9965334	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	4546388	4546409	AT1TE14755	.	+	VANDAL8	MuDR	DNA	21	tiny	123	medium	9965313	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	4568340	4568452	AT1TE14820	.	-	ATCOPIA28	Copia	LTR	112	short	81	medium	9943270	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	4580426	4580846	AT1TE14860	.	-	HELITRONY3	Helitron	RC	420	short	1399	high	9930876	chromoarm	2613	no-CHH	no-CHH	.	.	.	.	.
Chr1	4582382	4583615	AT1TE14865	.	+	ATREP2	Helitron	RC	1233	short	164	medium	9928107	chromoarm	4310	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	4583615	4584299	AT1TE14870	.	+	HELITRONY1D	Helitron	RC	684	short	756	high	9927423	chromoarm	3626	no-CHH	no-CHH	.	.	.	.	.
Chr1	4594516	4594550	AT1TE14900	.	-	ATREP4	Helitron	RC	34	tiny	832	high	9917172	chromoarm	967	no-CHH	no-CHH	.	.	.	.	.
Chr1	4594611	4595537	AT1TE14905	.	+	ATREP11	Helitron	RC	926	short	841	high	9916185	chromoarm	1062	no-CHH	no-CHH	.	.	.	.	.
Chr1	4595537	4595817	AT1TE14910	.	+	ATREP10D	Helitron	RC	280	short	1295	high	9915905	chromoarm	1966	no-CHH	no-CHH	.	.	.	.	.
Chr1	4619724	4620115	AT1TE14990	.	-	HELITRON4	Helitron	RC	391	short	199	medium	9891607	chromoarm	206	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	4651558	4660722	AT1TE15090	.	-	ATREP10D	Helitron	RC	9164	long	1295	high	9851000	chromoarm	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	4659771	4659830	AT1TE15095	.	-	ATREP3	Helitron	RC	59	tiny	1439	high	9851892	chromoarm	761	no-CHH	no-CHH	.	.	.	.	.
Chr1	4660722	4660763	AT1TE15100	.	+	HELITRONY3	Helitron	RC	41	tiny	1399	high	9850959	chromoarm	14	no-CHH	no-CHH	.	.	.	.	.
Chr1	4660763	4660795	AT1TE15105	.	+	ATREP10D	Helitron	RC	32	tiny	1295	high	9850927	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	4683025	4685396	AT1TE15170	.	+	AT9MU1	MuDR	DNA	2371	medium	10	low	9826326	chromoarm	1122	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	4683974	4684349	AT1TE15175	.	+	ATMU1	MuDR	DNA	375	short	59	medium	9827373	chromoarm	2071	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	4685519	4685630	AT1TE15180	.	+	AT9NMU1	MuDR	DNA	112	short	45	low	9826092	chromoarm	2570	.	.	.	.	.	.	.
Chr1	4689800	4690244	AT1TE15190	.	-	BRODYAGA1A	MuDR	DNA	444	short	586	high	9821478	chromoarm	164	no-CHH	no-CHH	.	.	.	.	.
Chr1	4706566	4708276	AT1TE15240	.	-	HELITRONY1B	Helitron	RC	1710	short	414	high	9803446	chromoarm	1974	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	4708276	4708466	AT1TE15245	.	+	ATREP15	Helitron	RC	190	short	1003	high	9803256	chromoarm	2052	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	4748156	4748407	AT1TE15370	.	-	DRL1	HAT	DNA	251	short	1	low	9763315	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	4769699	4770059	AT1TE15440	.	-	ATREP4	Helitron	RC	360	short	832	high	9741663	chromoarm	3571	no-CHH	no-CHH	.	.	.	.	.
Chr1	4770059	4770663	AT1TE15445	.	-	ATREP2	Helitron	RC	604	short	164	medium	9741059	chromoarm	2967	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	4770663	4770834	AT1TE15450	.	-	ATREP2A	Helitron	RC	171	short	116	medium	9740888	chromoarm	2796	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	4770834	4770904	AT1TE15455	.	+	ATREP3	Helitron	RC	70	tiny	1439	high	9740818	chromoarm	2726	no-CHH	no-CHH	.	.	.	.	.
Chr1	4785102	4785157	AT1TE15500	.	-	HELITRONY1D	Helitron	RC	55	tiny	756	high	9726565	chromoarm	3220	no-CHH	no-CHH	.	.	.	.	.
Chr1	4785159	4785273	AT1TE15505	.	-	ATREP3	Helitron	RC	114	short	1439	high	9726449	chromoarm	3277	no-CHH	no-CHH	.	.	.	.	.
Chr1	4785273	4787837	AT1TE15510	.	+	ATREP3	Helitron	RC	2564	medium	1439	high	9723885	chromoarm	1749	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	4787837	4788049	AT1TE15515	.	+	ATREP5	Helitron	RC	212	short	624	high	9723673	chromoarm	1537	no-CHH	no-CHH	.	.	.	.	.
Chr1	4814529	4814987	AT1TE15600	.	-	ATREP3	Helitron	RC	458	short	1439	high	9696735	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	4829795	4830189	AT1TE15650	.	+	HELITRONY1A	Helitron	RC	394	short	271	high	9681533	chromoarm	107	no-CHH	no-CHH	.	.	.	.	.
Chr1	4835449	4835616	AT1TE15660	.	-	ATCOPIA88	Copia	LTR	167	short	8	low	9676106	chromoarm	424	no-CHH	no-CHH	.	.	.	.	.
Chr1	4846670	4846730	AT1TE15700	.	-	ATCOPIA62	Copia	LTR	60	tiny	16	low	9664992	chromoarm	1097	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	4872079	4872219	AT1TE15780	.	-	HELITRONY1D	Helitron	RC	140	short	756	high	9639503	chromoarm	876	no-CHH	no-CHH	.	.	.	.	.
Chr1	4872219	4872684	AT1TE15785	.	-	ATREP4	Helitron	RC	465	short	832	high	9639038	chromoarm	515	no-CHH	no-CHH	.	.	.	.	.
Chr1	4892276	4893055	AT1TE15840	.	-	ATREP11	Helitron	RC	779	short	841	high	9618667	chromoarm	576	no-CHH	no-CHH	.	.	.	.	.
Chr1	4908295	4908451	AT1TE15890	.	+	ATCOPIA68	Copia	LTR	156	short	43	low	9603271	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	4931017	4931086	AT1TE15960	.	-	ATCOPIA57	Copia	LTR	69	tiny	48	low	9580636	chromoarm	207	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	4945120	4945380	AT1TE16010	.	+	ARNOLDY2	MuDR	DNA	260	short	288	high	9566342	chromoarm	1956	no-CHH	no-CHH	.	.	.	.	.
Chr1	4966555	4967016	AT1TE16080	.	+	ATREP6	Helitron	RC	461	short	181	medium	9544706	chromoarm	1359	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	4987763	4987868	AT1TE16150	.	-	ATENSPM4	En-Spm	DNA	105	short	50	medium	9523854	chromoarm	571	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	4987868	4988882	AT1TE16155	.	-	ATREP15	Helitron	RC	1014	short	1003	high	9522840	chromoarm	676	no-CHH	no-CHH	.	.	.	.	.
Chr1	5022762	5023295	AT1TE16260	.	+	HELITRONY3	Helitron	RC	533	short	1399	high	9488427	chromoarm	360	no-CHH	no-CHH	.	.	.	.	.
Chr1	5025646	5025808	AT1TE16265	.	+	ATIS112A	Harbinger	DNA	162	short	173	medium	9485914	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	5030106	5030262	AT1TE16275	.	+	ATIS112A	Harbinger	DNA	156	short	173	medium	9481460	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	5044509	5044605	AT1TE16320	.	-	ATREP3	Helitron	RC	96	tiny	1439	high	9467117	chromoarm	584	no-CHH	no-CHH	.	.	.	.	.
Chr1	5044605	5045303	AT1TE16325	.	+	TNAT1A	.	DNA	698	short	162	medium	9466419	chromoarm	477	no-CHH	no-CHH	.	.	.	.	.
Chr1	5045303	5045665	AT1TE16330	.	-	ATREP11A	Helitron	RC	362	short	95	medium	9466057	chromoarm	115	no-CHH	no-CHH	.	.	.	.	.
Chr1	5058196	5058727	AT1TE16370	.	-	HELITRON4	Helitron	RC	531	short	199	medium	9452995	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	5082820	5083651	AT1TE16450	.	+	ATREP15	Helitron	RC	831	short	1003	high	9428071	chromoarm	113	no-CHH	no-CHH	.	.	.	.	.
Chr1	5098848	5099142	AT1TE16500	.	+	VANDAL6	MuDR	DNA	294	short	89	medium	9412580	chromoarm	429	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	5100441	5100610	AT1TE16505	.	+	VANDAL6	MuDR	DNA	169	short	89	medium	9411112	chromoarm	0	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	5123633	5123802	AT1TE16580	.	+	BRODYAGA1A	MuDR	DNA	169	short	586	high	9387920	chromoarm	374	no-CHH	no-CHH	.	.	.	.	.
Chr1	5129879	5130004	AT1TE16590	.	-	BRODYAGA1A	MuDR	DNA	125	short	586	high	9381718	chromoarm	421	no-CHH	no-CHH	.	.	.	.	.
Chr1	5130004	5130759	AT1TE16595	.	+	HELITRON2	Helitron	RC	755	short	194	medium	9380963	chromoarm	546	no-CHH	no-CHH	.	.	.	.	.
Chr1	5194222	5194711	AT1TE16800	.	-	ATREP19	.	DNA	489	short	189	medium	9317011	chromoarm	52	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	5197904	5198865	AT1TE16810	.	+	HELITRONY1E	Helitron	RC	961	short	447	high	9312857	chromoarm	728	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	5265725	5268602	AT1TE17030	.	-	Unassigned	.	Unassigned	2877	medium	.	low	9243120	chromoarm	570	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	5275964	5276773	AT1TE17050	.	+	VANDAL17	MuDR	DNA	809	short	178	medium	9234949	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	5288932	5289334	AT1TE17090	.	-	HELITRONY3	Helitron	RC	402	short	1399	high	9222388	chromoarm	557	no-CHH	no-CHH	.	.	.	.	.
Chr1	5289334	5290044	AT1TE17095	.	-	ATREP11	Helitron	RC	710	short	841	high	9221678	chromoarm	910	no-CHH	no-CHH	.	.	.	.	.
Chr1	5353334	5353756	AT1TE17300	.	-	ATENSPM8	En-Spm	DNA	422	short	11	low	9157966	chromoarm	7256	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	5353756	5353862	AT1TE17305	.	-	ATENSPM8	En-Spm	DNA	106	short	11	low	9157860	chromoarm	7678	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	5357353	5357511	AT1TE17315	.	+	ATTIRTA1	Tc1	DNA	158	short	95	medium	9154211	chromoarm	5522	no-CHH	no-CHH	.	.	.	.	.
Chr1	5359021	5359174	AT1TE17320	.	-	RathE3_cons	.	RathE3_cons	153	short	104	medium	9152548	chromoarm	3859	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	5372482	5373191	AT1TE17360	.	+	ATREP3	Helitron	RC	709	short	1439	high	9138531	chromoarm	361	no-CHH	no-CHH	.	.	.	.	.
Chr1	5375977	5376341	AT1TE17365	.	+	BRODYAGA1A	MuDR	DNA	364	short	586	high	9135381	chromoarm	646	no-CHH	no-CHH	.	.	.	.	.
Chr1	5378224	5378613	AT1TE17370	.	+	ATHATN5	HAT	DNA	389	short	42	low	9133109	chromoarm	286	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	5391193	5391425	AT1TE17410	.	-	ATREP5	Helitron	RC	232	short	624	high	9120297	chromoarm	0	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	5391426	5392691	AT1TE17415	.	+	BRODYAGA2	MuDR	DNA	1265	short	525	high	9119031	chromoarm	228	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	5422381	5422455	AT1TE17510	.	+	HELITRONY1D	Helitron	RC	74	tiny	756	high	9089267	chromoarm	1786	no-CHH	no-CHH	.	.	.	.	.
Chr1	5422455	5423198	AT1TE17515	.	+	ATREP10D	Helitron	RC	743	short	1295	high	9088524	chromoarm	1043	no-CHH	no-CHH	.	.	.	.	.
Chr1	5436578	5436720	AT1TE17550	.	+	ATREP10D	Helitron	RC	142	short	1295	high	9075002	chromoarm	657	no-CHH	no-CHH	.	.	.	.	.
Chr1	5436720	5437872	AT1TE17555	.	-	ATREP1	Helitron	RC	1152	short	498	high	9073850	chromoarm	604	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	5437872	5438207	AT1TE17560	.	-	HELITRONY1D	Helitron	RC	335	short	756	high	9073515	chromoarm	269	no-CHH	no-CHH	.	.	.	.	.
Chr1	5451892	5452078	AT1TE17610	.	-	VANDAL1	MuDR	DNA	186	short	80	medium	9059644	chromoarm	0	no-CHH	no-RdDM	.	.	.	.	.
Chr1	5518082	5518138	AT1TE17830	.	-	ATLINEIII	L1	LINE	56	tiny	196	medium	8993584	chromoarm	242	no-CHH	no-CHH	.	.	.	.	.
Chr1	5531242	5531284	AT1TE17870	.	+	ATREP1	Helitron	RC	42	tiny	498	high	8980438	chromoarm	1130	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	5531284	5531953	AT1TE17875	.	+	ATREP2A	Helitron	RC	669	short	116	medium	8979769	chromoarm	461	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	5634544	5635101	AT1TE18210	.	-	BRODYAGA2	MuDR	DNA	557	short	525	high	8876621	chromoarm	3700	no-CHH	no-CHH	.	.	.	.	.
Chr1	5635101	5635464	AT1TE18215	.	-	ATREP9	Helitron	RC	363	short	201	high	8876258	chromoarm	3614	no-CHH	no-CHH	.	.	.	.	.
Chr1	5636841	5638117	AT1TE18220	.	-	HELITRONY1E	Helitron	RC	1276	short	447	high	8873605	chromoarm	961	no-CHH	no-CHH	.	.	.	.	.
Chr1	5653688	5653775	AT1TE18270	.	+	ATCOPIA28	Copia	LTR	87	tiny	81	medium	8857947	chromoarm	849	no-CHH	no-CHH	.	.	.	.	.
Chr1	5655867	5656061	AT1TE18275	.	-	HARBINGER	Harbinger	DNA	194	short	90	medium	8855661	chromoarm	3028	no-CHH	no-CHH	.	.	.	.	.
Chr1	5657194	5657320	AT1TE18280	.	+	HELITRONY3	Helitron	RC	126	short	1399	high	8854402	chromoarm	2144	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	5657320	5657736	AT1TE18285	.	-	ATREP13	Helitron	RC	416	short	106	medium	8853986	chromoarm	1728	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	5657736	5657944	AT1TE18290	.	-	ATREP10B	Helitron	RC	208	short	491	high	8853778	chromoarm	1520	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	5657944	5659382	AT1TE18295	.	-	ATREP10B	Helitron	RC	1438	short	491	high	8852340	chromoarm	82	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	5659382	5659406	AT1TE18300	.	-	ATREP10B	Helitron	RC	24	tiny	491	high	8852316	chromoarm	58	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	5679267	5681449	AT1TE18370	.	+	TAG2	HAT	DNA	2182	medium	86	medium	8830273	chromoarm	581	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	5681490	5681628	AT1TE18375	.	+	TAG2	HAT	DNA	139	short	86	medium	8830094	chromoarm	583	.	.	.	.	.	.	.
Chr1	5681629	5681695	AT1TE18380	.	+	TAG2	HAT	DNA	67	tiny	86	medium	8830027	chromoarm	516	.	.	.	.	.	.	.
Chr1	5681695	5681873	AT1TE18385	.	+	TAG2	HAT	DNA	178	short	86	medium	8829849	chromoarm	338	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	5691739	5696671	AT1TE18410	.	+	ATCOPIA89	Copia	LTR	4932	medium	12	low	8815051	chromoarm	638	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	5696671	5696699	AT1TE18415	.	+	ATCOPIA89	Copia	LTR	28	tiny	12	low	8815023	chromoarm	1146	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	5784962	5785335	AT1TE18700	.	+	ATCOPIA9	Copia	LTR	373	short	9	low	8726387	chromoarm	37	no-CHH	no-CHH	.	.	.	.	.
Chr1	5797259	5797340	AT1TE18740	.	-	ATENSPM5	En-Spm	DNA	81	tiny	111	medium	8714382	chromoarm	895	no-CHH	no-CHH	.	.	.	.	.
Chr1	5797670	5797691	AT1TE18745	.	-	ATCOPIA92	Copia	LTR	21	tiny	8	low	8714031	chromoarm	1306	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	5797691	5797910	AT1TE18750	.	-	ATCOPIA92	Copia	LTR	219	short	8	low	8713812	chromoarm	1327	no-CHH	no-CHH	.	.	.	.	.
Chr1	5805365	5805709	AT1TE18770	.	-	VANDAL5A	MuDR	DNA	344	short	56	medium	8706013	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	5807741	5807891	AT1TE18775	.	-	ATDNAI27T9B	MuDR	DNA	150	short	43	low	8703831	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	5811509	5811551	AT1TE18785	.	+	ATREP15	Helitron	RC	42	tiny	1003	high	8700171	chromoarm	21	no-CHH	no-CHH	.	.	.	.	.
Chr1	5811551	5812560	AT1TE18790	.	+	ATREP10D	Helitron	RC	1009	short	1295	high	8699162	chromoarm	63	no-CHH	no-CHH	.	.	.	.	.
Chr1	5812560	5812700	AT1TE18795	.	+	ATREP15	Helitron	RC	140	short	1003	high	8699022	chromoarm	27	no-CHH	no-CHH	.	.	.	.	.
Chr1	5819554	5820091	AT1TE18810	.	-	HELITRONY1E	Helitron	RC	537	short	447	high	8691631	chromoarm	166	no-CHH	no-CHH	.	.	.	.	.
Chr1	5862801	5862941	AT1TE18950	.	-	VANDAL8	MuDR	DNA	140	short	123	medium	8648781	chromoarm	560	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	5862941	5863537	AT1TE18955	.	+	ATREP2	Helitron	RC	596	short	164	medium	8648185	chromoarm	116	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	5863537	5863602	AT1TE18960	.	+	ATREP3	Helitron	RC	65	tiny	1439	high	8648120	chromoarm	51	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	5890524	5890604	AT1TE19050	.	+	ATTIRX1A	.	DNA	80	tiny	63	medium	8621118	chromoarm	359	no-CHH	no-CHH	.	.	.	.	.
Chr1	5898867	5898933	AT1TE19080	.	-	ATREP3	Helitron	RC	66	tiny	1439	high	8612789	chromoarm	150	RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	5898933	5899206	AT1TE19085	.	+	ATTIRX1C	.	DNA	273	short	39	low	8612516	chromoarm	216	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	5899207	5899868	AT1TE19090	.	-	ATREP2	Helitron	RC	661	short	164	medium	8611854	chromoarm	490	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	5899868	5899901	AT1TE19095	.	+	ATTIRX1C	.	DNA	33	tiny	39	low	8611821	chromoarm	1151	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	5911724	5916535	AT1TE19130	.	+	ATMU3	MuDR	DNA	4811	medium	15	low	8595187	chromoarm	100	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	5915188,5915270,5916095,5916267,5916271	5915429,5915427,5915477,5915493,5915594	+,+,-,-,-	transcript_id-"8fbcccbb-3295-4e13-a24d-300992bdab0b|4",transcript_id-"64fe456c-7208-4fab-94ed-3aedba3e97e0|10",transcript_id-"1bc4e996-4fcb-4a06-939d-2977e652cce1|3",transcript_id-"dfc8015e-63eb-46f2-967b-86bf96376dbe|32",transcript_id-"3aaada3a-2a61-4d20-9dfa-4332bf29dc06|13"
Chr1	5916535	5916583	AT1TE19135	.	+	ATMU7	MuDR	DNA	48	tiny	32	low	8595139	chromoarm	562	PolIV-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	5958627	5959682	AT1TE19270	.	-	ATLINE1_2	L1	LINE	1055	short	41	low	8552040	chromoarm	1237	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	5963973	5964607	AT1TE19280	.	+	VANDAL17	MuDR	DNA	634	short	178	medium	8547115	chromoarm	1728	no-CHH	no-CHH	.	.	.	.	.
Chr1	5965475	5967002	AT1TE19285	.	-	SIMPLEHAT2	HAT	DNA	1527	short	73	medium	8544720	chromoarm	1624	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	5967002	5967260	AT1TE19290	.	-	HELITRONY3	Helitron	RC	258	short	1399	high	8544462	chromoarm	1366	no-CHH	no-CHH	.	.	.	.	.
Chr1	5967260	5967319	AT1TE19295	.	+	ATHPOGO	Pogo	DNA	59	tiny	25	low	8544403	chromoarm	1307	no-CHH	no-CHH	.	.	.	.	.
Chr1	5967432	5967570	AT1TE19300	.	+	ATHPOGON1	Pogo	DNA	138	short	174	medium	8544152	chromoarm	1056	no-CHH	no-CHH	.	.	.	.	.
Chr1	5999193	5999282	AT1TE19400	.	+	ATCOPIA13	Copia	LTR	89	tiny	35	low	8512440	chromoarm	236	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	6009291	6014092	AT1TE19430	.	-	ATCOPIA64	Copia	LTR	4801	medium	13	low	8497630	chromoarm	126	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	6014092	6014116	AT1TE19435	.	-	ATCOPIA65	Copia	LTR	24	tiny	34	low	8497606	chromoarm	4640	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	6074556	6074607	AT1TE19630	.	+	ATREP3	Helitron	RC	51	tiny	1439	high	8437115	chromoarm	72	no-CHH	no-CHH	.	.	.	.	.
Chr1	6074607	6075608	AT1TE19635	.	+	ATREP13	Helitron	RC	1001	short	106	medium	8436114	chromoarm	123	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	6075608	6075714	AT1TE19640	.	+	META1	Copia	LTR	106	short	138	medium	8436008	chromoarm	673	no-CHH	no-CHH	.	.	.	.	.
Chr1	6102454	6103091	AT1TE19730	.	+	ATREP5	Helitron	RC	638	short	624	high	8408631	chromoarm	0	.	.	.	.	.	.	.
Chr1	6118058	6118280	AT1TE19780	.	-	HELITRONY2	Helitron	RC	222	short	198	medium	8393442	chromoarm	1787	no-CHH	no-CHH	.	.	.	.	.
Chr1	6119631	6120135	AT1TE19785	.	-	ATREP4	Helitron	RC	504	short	832	high	8391587	chromoarm	605	no-CHH	no-CHH	.	.	.	.	.
Chr1	6122833	6122862	AT1TE19790	.	-	HELITRONY3	Helitron	RC	29	tiny	1399	high	8388860	chromoarm	11	no-CHH	no-CHH	.	.	.	.	.
Chr1	6122862	6123448	AT1TE19795	.	-	ATTIR16T3A	.	DNA	586	short	106	medium	8388274	chromoarm	40	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	6123452	6123628	AT1TE19800	.	+	ATREP10B	Helitron	RC	176	short	491	high	8388094	chromoarm	466	no-CHH	no-CHH	.	.	.	.	.
Chr1	6127654	6127679	AT1TE19810	.	-	ATLINE1_3A	L1	LINE	25	tiny	160	medium	8384043	chromoarm	378	no-CHH	no-CHH	.	.	.	.	.
Chr1	6127679	6128262	AT1TE19815	.	-	ATLINEIII	L1	LINE	583	short	196	medium	8383460	chromoarm	403	no-CHH	no-RdDM	.	.	.	.	.
Chr1	6128262	6128348	AT1TE19820	.	-	ATLINE2	L1	LINE	86	tiny	138	medium	8383374	chromoarm	479	no-CHH	no-CHH	.	.	.	.	.
Chr1	6141635	6142279	AT1TE19860	.	+	ATREP3	Helitron	RC	644	short	1439	high	8369443	chromoarm	590	no-CHH	no-CHH	.	.	.	.	.
Chr1	6156400	6158864	AT1TE19910	.	-	VANDAL2N1	MuDR	DNA	2464	medium	51	medium	8352858	chromoarm	261	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	6196273	6196418	AT1TE20030	.	-	ATREP15	Helitron	RC	146	short	1003	high	8315304	chromoarm	225	.	.	.	.	.	.	.
Chr1	6196418	6197401	AT1TE20035	.	+	ATREP15	Helitron	RC	983	short	1003	high	8314321	chromoarm	371	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	6198002	6199615	AT1TE20040	.	-	HELITRONY1D	Helitron	RC	1613	short	756	high	8312107	chromoarm	364	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	6199616	6199686	AT1TE20045	.	-	ATREP3	Helitron	RC	71	tiny	1439	high	8312036	chromoarm	293	.	.	.	.	.	.	.
Chr1	6199687	6199844	AT1TE20050	.	+	BRODYAGA2	MuDR	DNA	158	short	525	high	8311878	chromoarm	135	.	.	.	.	.	.	.
Chr1	6209601	6209717	AT1TE20080	.	-	ATMU3N1	MuDR	DNA	116	short	19	low	8302005	chromoarm	53	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	6211026	6211309	AT1TE20085	.	+	VANDAL12	MuDR	DNA	283	short	37	low	8300413	chromoarm	0	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	6211688	6211987	AT1TE20090	.	+	ATREP16	MuDR	DNA	299	short	47	low	8299735	chromoarm	77	PolIV-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr1	6218530	6219237	AT1TE20110	.	-	ATREP2	Helitron	RC	707	short	164	medium	8292485	chromoarm	319	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	6219237	6219260	AT1TE20115	.	+	VANDAL8	MuDR	DNA	23	tiny	123	medium	8292462	chromoarm	1026	no-CHH	no-RdDM	.	.	.	.	.
Chr1	6230215	6230359	AT1TE20150	.	-	ATREP11	Helitron	RC	144	short	841	high	8281363	chromoarm	105	no-CHH	no-CHH	.	.	.	.	.
Chr1	6230359	6230391	AT1TE20155	.	-	HELITRONY1E	Helitron	RC	32	tiny	447	high	8281331	chromoarm	249	no-CHH	no-CHH	.	.	.	.	.
Chr1	6230391	6231451	AT1TE20160	.	-	HELITRONY1E	Helitron	RC	1060	short	447	high	8280271	chromoarm	281	no-CHH	no-CHH	.	.	.	.	.
Chr1	6232923	6233516	AT1TE20165	.	+	ATREP1	Helitron	RC	593	short	498	high	8278206	chromoarm	2378	no-CHH	no-CHH	.	.	.	.	.
Chr1	6233516	6233615	AT1TE20170	.	+	HELITRONY3	Helitron	RC	99	tiny	1399	high	8278107	chromoarm	2279	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	6233879	6233920	AT1TE20175	.	-	ATREP10A	Helitron	RC	41	tiny	279	high	8277802	chromoarm	1974	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	6233920	6235720	AT1TE20180	.	-	ATREP10D	Helitron	RC	1800	short	1295	high	8276002	chromoarm	174	PolIV-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	6236007	6235551	-	transcript_id-"0ba82f8d-de1c-445b-bb97-dfd3561f7166|3"
Chr1	6236162	6236229	AT1TE20185	.	+	BRODYAGA2	MuDR	DNA	67	tiny	525	high	8275493	chromoarm	0	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	6236229	6236274	AT1TE20190	.	+	HELITRONY3	Helitron	RC	45	tiny	1399	high	8275448	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	6236274	6237764	AT1TE20195	.	+	ARNOLDY2	MuDR	DNA	1490	short	288	high	8273958	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	6237764	6237963	AT1TE20200	.	-	HELITRONY3	Helitron	RC	199	short	1399	high	8273759	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	6272449	6272600	AT1TE20310	.	-	ATIS112A	Harbinger	DNA	151	short	173	medium	8239122	chromoarm	2642	no-CHH	no-CHH	.	.	.	.	.
Chr1	6273522	6276128	AT1TE20315	.	-	TAG2	HAT	DNA	2606	medium	86	medium	8235594	chromoarm	895	PolIV-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr1	6273768	6273906	AT1TE20320	.	-	TAG2	HAT	DNA	139	short	86	medium	8237816	chromoarm	3117	.	.	.	.	.	.	.
Chr1	6273947	6274053	AT1TE20325	.	-	TAG2	HAT	DNA	107	short	86	medium	8237669	chromoarm	2970	.	.	LowExpressed	.	.	.	.
Chr1	6302581	6303156	AT1TE20410	.	+	ATCOPIA58	Copia	LTR	575	short	18	low	8208566	chromoarm	0	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	6314683	6315328	AT1TE20450	.	+	ATREP4	Helitron	RC	645	short	832	high	8196394	chromoarm	357	no-CHH	no-CHH	.	.	.	.	.
Chr1	6378685	6378718	AT1TE20660	.	+	HELITRONY1E	Helitron	RC	33	tiny	447	high	8133004	chromoarm	137	no-CHH	no-CHH	.	.	.	.	.
Chr1	6378718	6379470	AT1TE20665	.	+	HELITRONY1B	Helitron	RC	752	short	414	high	8132252	chromoarm	170	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	6379971	6380659	AT1TE20670	.	+	HELITRONY1D	Helitron	RC	688	short	756	high	8131063	chromoarm	996	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr1	6381177	6381467	AT1TE20675	.	-	ATREP10D	Helitron	RC	290	short	1295	high	8130255	chromoarm	188	no-CHH	no-CHH	.	.	.	.	.
Chr1	6402735	6402869	AT1TE20740	.	-	ATREP14	Helitron	RC	134	short	47	low	8108853	chromoarm	148	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	6402869	6403656	AT1TE20745	.	-	ATREP14	Helitron	RC	787	short	47	low	8108066	chromoarm	282	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	6403656	6403763	AT1TE20750	.	+	ATREP3	Helitron	RC	107	short	1439	high	8107959	chromoarm	1069	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	6403763	6405272	AT1TE20755	.	-	ATREP6	Helitron	RC	1509	short	181	medium	8106450	chromoarm	506	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	6405272	6405391	AT1TE20760	.	+	ATREP6	Helitron	RC	119	short	181	medium	8106331	chromoarm	387	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	6429616	6430111	AT1TE20840	.	+	ATMU6N1	MuDR	DNA	495	short	39	low	8081611	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	6445973	6446201	AT1TE20890	.	+	TSCL	.	LINE?	228	short	81	medium	8065521	chromoarm	2927	no-CHH	no-CHH	.	.	.	.	.
Chr1	6449848	6450293	AT1TE20900	.	-	BRODYAGA1A	MuDR	DNA	445	short	586	high	8061429	chromoarm	487	no-CHH	no-CHH	.	.	.	.	.
Chr1	6450293	6450340	AT1TE20905	.	+	ATREP11	Helitron	RC	47	tiny	841	high	8061382	chromoarm	440	no-CHH	no-CHH	.	.	.	.	.
Chr1	6450340	6450389	AT1TE20910	.	-	ATDNA2T9C	MuDR	DNA	49	tiny	242	high	8061333	chromoarm	391	no-CHH	no-CHH	.	.	.	.	.
Chr1	6453141	6453546	AT1TE20915	.	-	BRODYAGA1A	MuDR	DNA	405	short	586	high	8058176	chromoarm	155	no-CHH	no-CHH	.	.	.	.	.
Chr1	6454530	6454676	AT1TE20920	.	+	HELITRONY3	Helitron	RC	146	short	1399	high	8057046	chromoarm	1544	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	6454676	6456015	AT1TE20925	.	+	SIMPLEHAT2	HAT	DNA	1339	short	73	medium	8055707	chromoarm	1690	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	6456015	6456183	AT1TE20930	.	+	HELITRONY3	Helitron	RC	168	short	1399	high	8055539	chromoarm	1836	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	6466828	6466976	AT1TE20970	.	+	ATLINE1_4	L1	LINE	148	short	102	medium	8044746	chromoarm	289	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	6470398	6470472	AT1TE20980	.	-	RathE1_cons	.	RathE1_cons	74	tiny	213	high	8041250	chromoarm	677	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	6478131	6478451	AT1TE21010	.	+	ATCOPIA35	Copia	LTR	320	short	22	low	8033271	chromoarm	399	no-CHH	no-CHH	.	.	.	.	.
Chr1	6481930	6481979	AT1TE21020	.	-	VANDAL4	MuDR	DNA	49	tiny	102	medium	8029743	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	6483604	6484442	AT1TE21025	.	+	HELITRONY3	Helitron	RC	838	short	1399	high	8027280	chromoarm	141	no-CHH	no-CHH	.	.	.	.	.
Chr1	6513627	6514347	AT1TE21120	.	-	HELITRONY1E	Helitron	RC	720	short	447	high	7997375	chromoarm	1138	no-CHH	no-CHH	.	.	.	.	.
Chr1	6514347	6514399	AT1TE21125	.	-	ATREP10D	Helitron	RC	52	tiny	1295	high	7997323	chromoarm	1086	no-CHH	no-CHH	.	.	.	.	.
Chr1	6514399	6515317	AT1TE21130	.	+	ATREP1	Helitron	RC	918	short	498	high	7996405	chromoarm	168	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	6515317	6515466	AT1TE21135	.	+	HELITRONY1E	Helitron	RC	149	short	447	high	7996256	chromoarm	19	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	6538418	6543539	AT1TE21210	.	+	META1	Copia	LTR	5121	long	138	medium	7968183	chromoarm	312	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	6556170	6556521	AT1TE21250	.	+	ATTIRX1A	.	DNA	352	short	63	medium	7955201	chromoarm	805	.	.	LowExpressed	.	.	.	.
Chr1	6571872	6573214	AT1TE21300	.	+	ATLINE2	L1	LINE	1342	short	138	medium	7938508	chromoarm	1072	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	6573463	6574189	AT1TE21305	.	+	TSCL	.	LINE?	726	short	81	medium	7937533	chromoarm	2663	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	6574509	6575045	AT1TE21310	.	+	ATN9_1	MuDR	DNA	536	short	65	medium	7936677	chromoarm	1849	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	6587075	6587127	AT1TE21350	.	-	ATREP10B	Helitron	RC	52	tiny	491	high	7924595	chromoarm	767	no-CHH	no-CHH	.	.	.	.	.
Chr1	6587128	6588246	AT1TE21355	.	-	ATREP10A	Helitron	RC	1119	short	279	high	7923476	chromoarm	295	.	.	.	.	.	.	.
Chr1	6589530	6589760	AT1TE21360	.	+	RP1_AT	.	DNA	230	short	87	medium	7921962	chromoarm	274	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	6593172	6594618	AT1TE21370	.	+	ATREP10D	Helitron	RC	1446	short	1295	high	7917104	chromoarm	557	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	6594618	6594664	AT1TE21375	.	+	HELITRONY3	Helitron	RC	46	tiny	1399	high	7917058	chromoarm	895	no-CHH	no-CHH	.	.	.	.	.
Chr1	6626062	6626718	AT1TE21470	.	-	ATREP3	Helitron	RC	656	short	1439	high	7885004	chromoarm	206	no-CHH	no-CHH	.	.	.	.	.
Chr1	6630258	6630352	AT1TE21480	.	-	ATRE1	Copia	LTR	94	tiny	22	low	7881370	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	6640459	6640486	AT1TE21510	.	-	BRODYAGA1A	MuDR	DNA	27	tiny	586	high	7871236	chromoarm	3702	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	6640486	6640989	AT1TE21515	.	-	ATREP10A	Helitron	RC	503	short	279	high	7870733	chromoarm	3199	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	6654800	6655609	AT1TE21560	.	+	HELITRONY1E	Helitron	RC	809	short	447	high	7856113	chromoarm	1650	no-CHH	no-CHH	.	.	.	.	.
Chr1	6661364	6661662	AT1TE21570	.	-	ATREP3	Helitron	RC	298	short	1439	high	7850060	chromoarm	1664	no-CHH	no-CHH	.	.	.	.	.
Chr1	6661662	6662494	AT1TE21575	.	+	HELITRONY1B	Helitron	RC	832	short	414	high	7849228	chromoarm	832	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	6662494	6662607	AT1TE21580	.	-	ATREP10B	Helitron	RC	113	short	491	high	7849115	chromoarm	719	no-CHH	no-CHH	.	.	.	.	.
Chr1	6669935	6670131	AT1TE21600	.	+	DT1	Mariner	DNA	196	short	123	medium	7841591	chromoarm	972	no-CHH	no-CHH	.	.	.	.	.
Chr1	6704196	6709404	AT1TE21710	.	+	META1	Copia	LTR	5208	long	138	medium	7802318	chromoarm	368	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	6709615	6709729	AT1TE21715	.	+	TAG3N1	HAT	DNA	114	short	97	medium	7801993	chromoarm	43	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	6715363	6715546	AT1TE21725	.	-	RP1_AT	.	DNA	183	short	87	medium	7796176	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	6719324	6720759	AT1TE21735	.	+	ATCOPIA14	Copia	LTR	1435	short	7	low	7790963	chromoarm	2885	no-CHH	no-CHH	.	.	.	.	.
Chr1	6734934	6734954	AT1TE21780	.	-	ATREP5	Helitron	RC	20	tiny	624	high	7776768	chromoarm	301	no-CHH	no-CHH	.	.	.	.	.
Chr1	6734954	6735678	AT1TE21785	.	-	ATREP3	Helitron	RC	724	short	1439	high	7776044	chromoarm	321	no-CHH	no-CHH	.	.	.	.	.
Chr1	6735678	6737670	AT1TE21790	.	+	ATREP3	Helitron	RC	1992	short	1439	high	7774052	chromoarm	813	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	6737670	6737763	AT1TE21795	.	+	HELITRONY3	Helitron	RC	93	tiny	1399	high	7773959	chromoarm	720	no-CHH	no-CHH	.	.	.	.	.
Chr1	6742978	6744224	AT1TE21805	.	+	SIMPLEHAT1	HAT	DNA	1246	short	56	medium	7767498	chromoarm	295	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	6753990	6754119	AT1TE21830	.	-	ATDNAI27T9A	MuDR	DNA	129	short	116	medium	7757603	chromoarm	31	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	6758934	6759700	AT1TE21840	.	+	ATHPOGON1	Pogo	DNA	766	short	174	medium	7752022	chromoarm	331	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	6759700	6759761	AT1TE21845	.	+	ATHPOGON1	Pogo	DNA	61	tiny	174	medium	7751961	chromoarm	270	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	6759761	6759900	AT1TE21850	.	+	ATREP11	Helitron	RC	139	short	841	high	7751822	chromoarm	131	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	6768375	6768717	AT1TE21880	.	-	ATREP5	Helitron	RC	342	short	624	high	7743005	chromoarm	392	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	6778569	6778858	AT1TE21910	.	-	HELITRONY3	Helitron	RC	289	short	1399	high	7732864	chromoarm	226	no-CHH	no-CHH	.	.	.	.	.
Chr1	6789612	6790113	AT1TE21950	.	-	HELITRONY1D	Helitron	RC	501	short	756	high	7721609	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	6840166	6840274	AT1TE22110	.	+	ATCOPIA59	Copia	LTR	108	short	20	low	7671448	chromoarm	335	no-CHH	no-CHH	.	.	.	.	.
Chr1	6842768	6843125	AT1TE22115	.	+	ATREP11	Helitron	RC	357	short	841	high	7668597	chromoarm	2937	no-CHH	no-CHH	.	.	.	.	.
Chr1	6880491	6880695	AT1TE22230	.	-	ATCOPIA17	Copia	LTR	204	short	16	low	7631027	chromoarm	6657	no-CHH	no-CHH	.	.	.	.	.
Chr1	6910343	6910774	AT1TE22330	.	-	HELITRONY1B	Helitron	RC	431	short	414	high	7600948	chromoarm	1659	no-CHH	no-CHH	.	.	.	.	.
Chr1	6923173	6923809	AT1TE22370	.	+	ATREP10B	Helitron	RC	636	short	491	high	7587913	chromoarm	1233	no-CHH	no-CHH	.	.	.	.	.
Chr1	6947206	6947556	AT1TE22450	.	-	ATREP3	Helitron	RC	350	short	1439	high	7564166	chromoarm	189	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	6951417	6951538	AT1TE22460	.	-	ATDNAI27T9A	MuDR	DNA	121	short	116	medium	7560184	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	6982366	6982963	AT1TE22560	.	+	ATREP11	Helitron	RC	597	short	841	high	7528759	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	7013322	7013781	AT1TE22660	.	+	ATREP19	.	DNA	459	short	189	medium	7497941	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	7013781	7013897	AT1TE22665	.	-	ATREP1	Helitron	RC	116	short	498	high	7497825	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	7015745	7016316	AT1TE22670	.	-	HELITRON2	Helitron	RC	571	short	194	medium	7495406	chromoarm	529	no-CHH	no-CHH	.	.	.	.	.
Chr1	7016513	7016567	AT1TE22675	.	+	ATLINEIII	L1	LINE	54	tiny	196	medium	7495155	chromoarm	403	no-CHH	no-CHH	.	.	.	.	.
Chr1	7023492	7023545	AT1TE22690	.	-	ATMU6N1	MuDR	DNA	53	tiny	39	low	7488177	chromoarm	283	PolIV-and-RDR6-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	7023545	7024535	AT1TE22695	.	+	ATMU6N1	MuDR	DNA	990	short	39	low	7487187	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	7024535	7024565	AT1TE22700	.	-	ATMU6N1	MuDR	DNA	30	tiny	39	low	7487157	chromoarm	323	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	7024565	7024640	AT1TE22705	.	-	ATMU6	MuDR	DNA	75	tiny	26	low	7487082	chromoarm	353	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	7025034	7025356	AT1TE22710	.	+	ATENSPM6	En-Spm	DNA	322	short	151	medium	7486366	chromoarm	191	no-CHH	no-CHH	.	.	.	.	.
Chr1	7026774	7026807	AT1TE22715	.	-	ATREP15	Helitron	RC	33	tiny	1003	high	7484915	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	7026807	7028132	AT1TE22720	.	-	ATREP11	Helitron	RC	1325	short	841	high	7483590	chromoarm	0	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr1	7034888	7034944	AT1TE22740	.	-	ATREP5	Helitron	RC	56	tiny	624	high	7476778	chromoarm	14	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	7034944	7035030	AT1TE22745	.	-	ATREP5	Helitron	RC	86	tiny	624	high	7476692	chromoarm	70	no-CHH	no-CHH	.	.	.	.	.
Chr1	7035030	7037376	AT1TE22750	.	+	ATREP3	Helitron	RC	2346	medium	1439	high	7474346	chromoarm	156	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	7037376	7037487	AT1TE22755	.	+	ATREP3	Helitron	RC	111	short	1439	high	7474235	chromoarm	1480	no-CHH	no-CHH	.	.	.	.	.
Chr1	7037487	7037582	AT1TE22760	.	+	ARNOLDY2	MuDR	DNA	95	tiny	288	high	7474140	chromoarm	1385	no-CHH	no-CHH	.	.	.	.	.
Chr1	7047675	7047813	AT1TE22790	.	-	ATREP4	Helitron	RC	138	short	832	high	7463909	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	7047813	7048779	AT1TE22795	.	+	ATREP3	Helitron	RC	966	short	1439	high	7462943	chromoarm	138	no-CHH	no-CHH	.	.	.	.	.
Chr1	7066492	7071562	AT1TE22850	.	+	ATLANTYS2	Gypsy	LTR	5070	long	179	medium	7440160	chromoarm	629	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	7067628	7067790	AT1TE22855	.	+	ATLANTYS1	Gypsy	LTR	162	short	153	medium	7443932	chromoarm	2581	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	7071562	7071716	AT1TE22865	.	+	ATLANTYS2	Gypsy	LTR	154	short	179	medium	7440006	chromoarm	475	no-RdDM	no-CHH	.	.	.	.	.
Chr1	7125859	7125994	AT1TE23040	.	-	ATDNA1T9A	MuDR	DNA	135	short	36	low	7385728	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	7132307	7132353	AT1TE23060	.	-	ATREP8	Helitron	RC	46	tiny	75	medium	7379369	chromoarm	124	PolIV-and-RDR6-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	7132353	7132972	AT1TE23065	.	-	ATREP7	Helitron	RC	619	short	164	medium	7378750	chromoarm	138	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	7132972	7133048	AT1TE23070	.	+	ATREP19	.	DNA	76	tiny	189	medium	7378674	chromoarm	62	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	7138401	7139137	AT1TE23080	.	+	HELITRONY1E	Helitron	RC	736	short	447	high	7372585	chromoarm	1128	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	7151875	7152327	AT1TE23120	.	+	HELITRONY1A	Helitron	RC	452	short	271	high	7359395	chromoarm	2266	no-CHH	no-CHH	.	.	.	.	.
Chr1	7152327	7152353	AT1TE23125	.	+	ATREP5	Helitron	RC	26	tiny	624	high	7359369	chromoarm	2718	no-CHH	no-CHH	.	.	.	.	.
Chr1	7163107	7163343	AT1TE23160	.	-	ATCOPIA81	Copia	LTR	236	short	6	low	7348379	chromoarm	1193	no-CHH	no-CHH	.	.	.	.	.
Chr1	7173966	7174501	AT1TE23190	.	+	ATREP19	.	DNA	535	short	189	medium	7337221	chromoarm	584	no-CHH	no-CHH	.	.	.	.	.
Chr1	7196711	7197396	AT1TE23260	.	+	ATREP4	Helitron	RC	685	short	832	high	7314326	chromoarm	94	no-CHH	no-CHH	.	.	.	.	.
Chr1	7201687	7202131	AT1TE23270	.	-	TNAT1A	.	DNA	444	short	162	medium	7309591	chromoarm	149	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	7202131	7202162	AT1TE23275	.	-	TNAT1A	.	DNA	31	tiny	162	medium	7309560	chromoarm	593	no-CHH	no-CHH	.	.	.	.	.
Chr1	7202162	7202263	AT1TE23280	.	-	HELITRONY3A	Helitron	RC	101	short	49	low	7309459	chromoarm	624	PolIV-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	7202464	7202502	AT1TE23285	.	+	TNAT1A	.	DNA	39	tiny	162	medium	7309220	chromoarm	799	.	.	.	.	.	.	.
Chr1	7224969	7225108	AT1TE23350	.	-	ATHATN3	HAT	DNA	139	short	70	medium	7286614	chromoarm	1201	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	7227970	7228129	AT1TE23355	.	+	ATREP2	Helitron	RC	160	short	164	medium	7283593	chromoarm	403	.	.	.	.	.	.	.
Chr1	7241159	7241362	AT1TE23390	.	+	RP1_AT	.	DNA	204	short	87	medium	7270360	chromoarm	1570	.	.	.	.	.	.	.
Chr1	7241362	7241617	AT1TE23395	.	+	RP1_AT	.	DNA	255	short	87	medium	7270105	chromoarm	1315	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	7248746	7250145	AT1TE23410	.	-	ATREP1	Helitron	RC	1399	short	498	high	7261577	chromoarm	1072	no-CHH	no-CHH	.	.	.	.	.
Chr1	7254946	7257226	AT1TE23420	.	-	VANDAL1N1	MuDR	DNA	2280	medium	52	medium	7254496	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	7281214	7281533	AT1TE23500	.	+	HELITRONY3	Helitron	RC	319	short	1399	high	7230189	chromoarm	579	no-CHH	no-CHH	.	.	.	.	.
Chr1	7281533	7284779	AT1TE23505	.	+	ATREP5	Helitron	RC	3246	medium	624	high	7226943	chromoarm	562	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	7284779	7284911	AT1TE23510	.	+	HELITRONY3	Helitron	RC	132	short	1399	high	7226811	chromoarm	430	no-CHH	no-CHH	.	.	.	.	.
Chr1	7284911	7284990	AT1TE23515	.	+	ATREP15	Helitron	RC	79	tiny	1003	high	7226732	chromoarm	351	no-CHH	no-CHH	.	.	.	.	.
Chr1	7285420	7286126	AT1TE23520	.	-	VANDAL17	MuDR	DNA	706	short	178	medium	7225596	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	7286126	7286289	AT1TE23525	.	-	VANDAL17	MuDR	DNA	163	short	178	medium	7225433	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	7294986	7295099	AT1TE23550	.	+	ATCOPIA37	Copia	LTR	113	short	32	low	7216623	chromoarm	174	no-CHH	no-CHH	.	.	.	.	.
Chr1	7296462	7296507	AT1TE23555	.	+	ATREP9	Helitron	RC	45	tiny	201	high	7215215	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	7296507	7297177	AT1TE23560	.	-	HELITRONY3	Helitron	RC	670	short	1399	high	7214545	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	7313961	7314091	AT1TE23620	.	-	ATDNAI27T9C	MuDR	DNA	130	short	108	medium	7197631	chromoarm	246	no-CHH	no-CHH	.	.	.	.	.
Chr1	7323475	7323623	AT1TE23650	.	+	ATREP3	Helitron	RC	148	short	1439	high	7188099	chromoarm	1418	no-CHH	no-CHH	.	.	.	.	.
Chr1	7323623	7324366	AT1TE23655	.	-	HELITRONY3	Helitron	RC	743	short	1399	high	7187356	chromoarm	675	no-CHH	no-CHH	.	.	.	.	.
Chr1	7352929	7365197	AT1TE23740	.	-	VANDAL14	MuDR	DNA	12268	long	25	low	7146525	chromoarm	1661	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	7392260	7392513	AT1TE23830	.	+	VANDAL13	MuDR	DNA	253	short	38	low	7119209	chromoarm	841	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	7393252	7393404	AT1TE23835	.	+	VANDAL14	MuDR	DNA	153	short	25	low	7118318	chromoarm	1832	.	.	.	.	.	.	.
Chr1	7394405	7394765	AT1TE23840	.	-	ATSINE4	.	SINE	360	short	98	medium	7116957	chromoarm	565	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	7397252	7397547	AT1TE23845	.	-	ATMUN1	MuDR	DNA	295	short	107	medium	7114175	chromoarm	612	no-CHH	no-CHH	.	.	.	.	.
Chr1	7428111	7428930	AT1TE23940	.	-	Unassigned	.	Unassigned	819	short	.	low	7082792	chromoarm	1049	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	7433092	7433175	AT1TE23950	.	-	ATLINE1_3A	L1	LINE	83	tiny	160	medium	7078547	chromoarm	746	no-CHH	no-RdDM	.	.	.	.	.
Chr1	7433494	7433653	AT1TE23955	.	+	ATCOPIA57	Copia	LTR	159	short	48	low	7078069	chromoarm	649	no-CHH	no-CHH	.	.	.	.	.
Chr1	7442217	7442979	AT1TE23980	.	-	Unassigned	.	Unassigned	762	short	.	low	7068743	chromoarm	325	no-CHH	no-CHH	ExpressedAndAnnotated	7442998	7442106	-	transcript_id-"562e15c4-0688-408e-abe6-6eb6a278fddd|15"
Chr1	7443906	7444123	AT1TE23985	.	-	HELITRONY3	Helitron	RC	217	short	1399	high	7067599	chromoarm	873	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	7449963	7450695	AT1TE23995	.	-	Unassigned	.	Unassigned	732	short	.	low	7061027	chromoarm	1280	no-CHH	no-CHH	ExpressedAndAnnotated	7450729	7449816	-	transcript_id-"32f1c60a-40ef-457d-a6f3-d2dd81510c8d|5"
Chr1	7451149	7451707	AT1TE24000	.	-	Unassigned	.	Unassigned	558	short	.	low	7060015	chromoarm	1985	no-CHH	no-CHH	.	.	.	.	.
Chr1	7452573	7452646	AT1TE24005	.	-	TSCL	.	LINE?	73	tiny	81	medium	7059076	chromoarm	1046	no-CHH	no-CHH	.	.	.	.	.
Chr1	7458512	7458854	AT1TE24015	.	+	HELITRONY1D	Helitron	RC	342	short	756	high	7052868	chromoarm	3524	no-CHH	no-CHH	.	.	.	.	.
Chr1	7474985	7475697	AT1TE24060	.	+	ATLINEIII	L1	LINE	712	short	196	medium	7036025	chromoarm	389	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	7504604	7505040	AT1TE24160	.	-	ATREP3	Helitron	RC	436	short	1439	high	7006682	chromoarm	501	no-CHH	no-RdDM	.	.	.	.	.
Chr1	7505040	7505756	AT1TE24165	.	-	ATREP10B	Helitron	RC	716	short	491	high	7005966	chromoarm	937	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	7505756	7505989	AT1TE24170	.	+	ATDNA2T9C	MuDR	DNA	233	short	242	high	7005733	chromoarm	1653	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	7526121	7526145	AT1TE24240	.	-	ATGP9B	Gypsy	LTR	24	tiny	27	low	6985577	chromoarm	1490	no-CHH	no-CHH	.	.	.	.	.
Chr1	7526145	7526520	AT1TE24245	.	-	ATGP9B	Gypsy	LTR	375	short	27	low	6985202	chromoarm	1514	no-CHH	no-CHH	.	.	.	.	.
Chr1	7528009	7528105	AT1TE24250	.	-	ATREP3	Helitron	RC	96	tiny	1439	high	6983617	chromoarm	1941	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	7528105	7529158	AT1TE24255	.	+	ATREP10D	Helitron	RC	1053	short	1295	high	6982564	chromoarm	888	no-CHH	no-CHH	.	.	.	.	.
Chr1	7630433	7630573	AT1TE24580	.	+	ATCOPIA26	Copia	LTR	140	short	19	low	6881149	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	7674322	7675043	AT1TE24720	.	+	HELITRONY1E	Helitron	RC	721	short	447	high	6836679	chromoarm	107	no-CHH	no-CHH	.	.	.	.	.
Chr1	7675857	7675877	AT1TE24725	.	-	HELITRONY1E	Helitron	RC	20	tiny	447	high	6835845	chromoarm	11	no-CHH	no-CHH	.	.	.	.	.
Chr1	7675877	7676715	AT1TE24730	.	-	HELITRONY3	Helitron	RC	838	short	1399	high	6835007	chromoarm	31	no-CHH	no-CHH	.	.	.	.	.
Chr1	7676715	7676809	AT1TE24735	.	-	BRODYAGA2	MuDR	DNA	94	tiny	525	high	6834913	chromoarm	689	no-CHH	no-CHH	.	.	.	.	.
Chr1	7676809	7677032	AT1TE24740	.	-	HELITRONY1A	Helitron	RC	223	short	271	high	6834690	chromoarm	466	no-CHH	no-CHH	.	.	.	.	.
Chr1	7690037	7690172	AT1TE24780	.	+	ATLINE2	L1	LINE	135	short	138	medium	6821550	chromoarm	992	no-CHH	no-CHH	.	.	.	.	.
Chr1	7706434	7707375	AT1TE24830	.	+	HELITRONY1E	Helitron	RC	941	short	447	high	6804347	chromoarm	568	no-CHH	no-CHH	.	.	.	.	.
Chr1	7714707	7722547	AT1TE24850	.	+	ATCOPIA78	Copia	LTR	7840	long	24	low	6789175	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	7725247	7725868	AT1TE24855	.	+	HELITRONY3	Helitron	RC	621	short	1399	high	6785854	chromoarm	103	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	7729806	7730291	AT1TE24865	.	+	HELITRONY1A	Helitron	RC	485	short	271	high	6781431	chromoarm	235	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	7742721	7742941	AT1TE24900	.	-	ATCOPIA17	Copia	LTR	220	short	16	low	6768781	chromoarm	615	no-CHH	no-CHH	.	.	.	.	.
Chr1	7753464	7753538	AT1TE24930	.	+	ATREP11	Helitron	RC	74	tiny	841	high	6758184	chromoarm	39	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	7753538	7754191	AT1TE24935	.	-	HELITRONY1D	Helitron	RC	653	short	756	high	6757531	chromoarm	113	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	7761115	7761200	AT1TE24950	.	+	AT9NMU1	MuDR	DNA	85	tiny	45	low	6750522	chromoarm	700	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	7761200	7762110	AT1TE24955	.	-	AT9NMU1	MuDR	DNA	910	short	45	low	6749612	chromoarm	785	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	7762110	7762136	AT1TE24960	.	-	AT9NMU1	MuDR	DNA	26	tiny	45	low	6749586	chromoarm	1695	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	7762136	7762164	AT1TE24965	.	-	AT9NMU1	MuDR	DNA	28	tiny	45	low	6749558	chromoarm	1721	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	7766429	7766584	AT1TE24975	.	+	ATSINE2A	.	SINE	155	short	33	low	6745138	chromoarm	1785	PolIV-and-RDR6-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	7782646	7783016	AT1TE25020	.	-	HELITRONY3	Helitron	RC	370	short	1399	high	6728706	chromoarm	2060	no-CHH	no-CHH	.	.	.	.	.
Chr1	7783016	7784339	AT1TE25025	.	+	ATREP15	Helitron	RC	1323	short	1003	high	6727383	chromoarm	1549	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	7786503	7787318	AT1TE25030	.	-	ATREP10B	Helitron	RC	815	short	491	high	6724404	chromoarm	72	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	7787596	7787625	AT1TE25035	.	+	BRODYAGA2	MuDR	DNA	30	tiny	525	high	6724097	chromoarm	70	.	.	.	.	.	.	.
Chr1	7787625	7788203	AT1TE25040	.	+	ATREP10B	Helitron	RC	578	short	491	high	6723519	chromoarm	100	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	7788824	7789179	AT1TE25045	.	+	BRODYAGA1A	MuDR	DNA	355	short	586	high	6722543	chromoarm	471	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	7809354	7810370	AT1TE25110	.	+	HELITRONY3	Helitron	RC	1016	short	1399	high	6701352	chromoarm	0	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr1	7810370	7812003	AT1TE25115	.	-	ATREP4	Helitron	RC	1633	short	832	high	6699719	chromoarm	383	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	7812003	7812081	AT1TE25120	.	-	HELITRONY3	Helitron	RC	78	tiny	1399	high	6699641	chromoarm	305	no-CHH	no-CHH	.	.	.	.	.
Chr1	7812081	7812396	AT1TE25125	.	+	ATREP10A	Helitron	RC	315	short	279	high	6699326	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	7830575	7830662	AT1TE25180	.	-	HELITRONY1E	Helitron	RC	87	tiny	447	high	6681060	chromoarm	830	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	7830662	7831066	AT1TE25185	.	+	HELITRONY3	Helitron	RC	404	short	1399	high	6680656	chromoarm	917	no-CHH	no-CHH	.	.	.	.	.
Chr1	7831066	7831925	AT1TE25190	.	+	HELITRON2	Helitron	RC	859	short	194	medium	6679797	chromoarm	1321	no-CHH	no-CHH	.	.	.	.	.
Chr1	7831925	7832253	AT1TE25195	.	+	ATREP10D	Helitron	RC	328	short	1295	high	6679469	chromoarm	2180	no-CHH	no-CHH	.	.	.	.	.
Chr1	7832901	7832972	AT1TE25200	.	-	HELITRONY3	Helitron	RC	71	tiny	1399	high	6678750	chromoarm	3156	no-CHH	no-CHH	.	.	.	.	.
Chr1	7832972	7833185	AT1TE25205	.	+	ATREP3	Helitron	RC	213	short	1439	high	6678537	chromoarm	3059	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	7833185	7834254	AT1TE25210	.	-	ATREP7	Helitron	RC	1069	short	164	medium	6677468	chromoarm	1990	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	7845125	7845438	AT1TE25250	.	-	HELITRONY1B	Helitron	RC	313	short	414	high	6666284	chromoarm	1255	no-CHH	no-CHH	.	.	.	.	.
Chr1	7845438	7845473	AT1TE25255	.	-	ATREP1	Helitron	RC	35	tiny	498	high	6666249	chromoarm	1220	no-CHH	no-RdDM	.	.	.	.	.
Chr1	7845473	7846269	AT1TE25260	.	+	ATREP3	Helitron	RC	796	short	1439	high	6665453	chromoarm	424	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	7846269	7846319	AT1TE25265	.	-	HELITRONY1B	Helitron	RC	50	tiny	414	high	6665403	chromoarm	374	no-CHH	no-CHH	.	.	.	.	.
Chr1	7852211	7852860	AT1TE25275	.	-	ATREP15	Helitron	RC	649	short	1003	high	6658862	chromoarm	223	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	7857327	7857683	AT1TE25285	.	-	BRODYAGA1A	MuDR	DNA	356	short	586	high	6654039	chromoarm	1277	no-CHH	no-CHH	.	.	.	.	.
Chr1	7881082	7881155	AT1TE25360	.	-	ATCOPIA20	Copia	LTR	73	tiny	6	low	6630567	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	7911175	7911756	AT1TE25460	.	+	ATREP3	Helitron	RC	581	short	1439	high	6599966	chromoarm	363	no-CHH	no-CHH	.	.	.	.	.
Chr1	7917485	7918148	AT1TE25470	.	-	ATREP11	Helitron	RC	663	short	841	high	6593574	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	7959314	7959915	AT1TE25610	.	-	ATDNA2T9C	MuDR	DNA	601	short	242	high	6551807	chromoarm	988	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	7960123	7961263	AT1TE25615	.	-	ATDNA2T9B	MuDR	DNA	1140	short	26	low	6550459	chromoarm	1797	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	7961263	7961466	AT1TE25620	.	-	ATDNA2T9A	MuDR	DNA	203	short	48	low	6550256	chromoarm	2735	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	7968912	7969360	AT1TE25640	.	-	ATREP11	Helitron	RC	448	short	841	high	6542362	chromoarm	360	no-CHH	no-CHH	.	.	.	.	.
Chr1	7969360	7974385	AT1TE25645	.	+	TA11	L1	LINE	5025	long	157	medium	6537337	chromoarm	808	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	7975778	7975861	AT1TE25650	.	-	ATHPOGON1	Pogo	DNA	83	tiny	174	medium	6535861	chromoarm	758	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	7975861	7976602	AT1TE25655	.	-	ATHPOGON3	Pogo	DNA	741	short	118	medium	6535120	chromoarm	17	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	7980708	7981263	AT1TE25665	.	+	Unassigned	.	Unassigned	555	short	.	low	6530459	chromoarm	2135	no-CHH	no-CHH	.	.	.	.	.
Chr1	7981053	7981390	AT1TE25670	.	+	ATLINE1_3A	L1	LINE	337	short	160	medium	6530332	chromoarm	2120	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	7984010	7984159	AT1TE25675	.	+	HELITRONY1E	Helitron	RC	149	short	447	high	6527563	chromoarm	8	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	7984159	7985117	AT1TE25680	.	+	HELITRON2	Helitron	RC	958	short	194	medium	6526605	chromoarm	157	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	7985125	7986420	AT1TE25685	.	+	SIMPLEHAT2	HAT	DNA	1295	short	73	medium	6525302	chromoarm	887	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	7986420	7986482	AT1TE25690	.	+	HELITRONY3	Helitron	RC	62	tiny	1399	high	6525240	chromoarm	825	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	8002908	8002929	AT1TE25740	.	+	ATREP11	Helitron	RC	21	tiny	841	high	6508793	chromoarm	121	no-CHH	no-CHH	.	.	.	.	.
Chr1	8002929	8003330	AT1TE25745	.	-	BRODYAGA1A	MuDR	DNA	401	short	586	high	6508392	chromoarm	142	no-CHH	no-CHH	.	.	.	.	.
Chr1	8010977	8011616	AT1TE25770	.	+	ATREP15	Helitron	RC	639	short	1003	high	6500106	chromoarm	1912	no-CHH	no-CHH	.	.	.	.	.
Chr1	8011616	8011662	AT1TE25775	.	-	ATHPOGON3	Pogo	DNA	46	tiny	118	medium	6500060	chromoarm	1866	no-CHH	no-CHH	.	.	.	.	.
Chr1	8012600	8012685	AT1TE25780	.	-	TNAT1A	.	DNA	85	tiny	162	medium	6499037	chromoarm	843	no-CHH	no-CHH	.	.	.	.	.
Chr1	8023559	8024044	AT1TE25820	.	+	BRODYAGA1A	MuDR	DNA	485	short	586	high	6487678	chromoarm	43	no-CHH	no-CHH	.	.	.	.	.
Chr1	8035731	8035847	AT1TE25860	.	+	ATLINE1_3A	L1	LINE	116	short	160	medium	6475875	chromoarm	2761	no-CHH	no-RdDM	.	.	.	.	.
Chr1	8038373	8038944	AT1TE25865	.	-	ATREP4	Helitron	RC	571	short	832	high	6472778	chromoarm	5287	no-CHH	no-CHH	.	.	.	.	.
Chr1	8041736	8042217	AT1TE25870	.	+	ATREP11	Helitron	RC	481	short	841	high	6469505	chromoarm	2014	no-CHH	no-CHH	.	.	.	.	.
Chr1	8042669	8042891	AT1TE25875	.	-	VANDALNX2	MuDR	DNA	222	short	37	low	6468831	chromoarm	1340	no-CHH	no-CHH	.	.	.	.	.
Chr1	8043907	8044269	AT1TE25880	.	-	ATHILA4C	Gypsy	LTR	362	short	206	high	6467453	chromoarm	0	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	8044269	8044323	AT1TE25885	.	-	ATHILA4D_LTR	Gypsy	LTR	54	tiny	106	medium	6467399	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	8045731	8046157	AT1TE25890	.	-	ATREP1	Helitron	RC	426	short	498	high	6465565	chromoarm	66	no-CHH	no-CHH	.	.	.	.	.
Chr1	8053167	8053294	AT1TE25910	.	-	ATCOPIA59	Copia	LTR	127	short	20	low	6458428	chromoarm	453	PolIV-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr1	8053889	8054291	AT1TE25915	.	-	ATREP10D	Helitron	RC	402	short	1295	high	6457431	chromoarm	1175	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	8054291	8055062	AT1TE25920	.	+	ATREP1	Helitron	RC	771	short	498	high	6456660	chromoarm	536	no-CHH	no-CHH	.	.	.	.	.
Chr1	8055062	8055260	AT1TE25925	.	-	ATREP10D	Helitron	RC	198	short	1295	high	6456462	chromoarm	338	no-CHH	no-CHH	.	.	.	.	.
Chr1	8059572	8060613	AT1TE25935	.	-	ATREP6	Helitron	RC	1041	short	181	medium	6451109	chromoarm	428	no-CHH	no-CHH	.	.	.	.	.
Chr1	8113299	8113476	AT1TE26100	.	+	ARNOLDY2	MuDR	DNA	177	short	288	high	6398246	chromoarm	1404	no-CHH	no-CHH	.	.	.	.	.
Chr1	8113476	8113990	AT1TE26105	.	-	HELITRONY3	Helitron	RC	514	short	1399	high	6397732	chromoarm	1581	no-CHH	no-CHH	.	.	.	.	.
Chr1	8113990	8114421	AT1TE26110	.	+	HELITRONY1B	Helitron	RC	431	short	414	high	6397301	chromoarm	2095	no-CHH	no-CHH	.	.	.	.	.
Chr1	8114421	8114684	AT1TE26115	.	-	ATREP3	Helitron	RC	263	short	1439	high	6397038	chromoarm	2526	no-CHH	no-CHH	.	.	.	.	.
Chr1	8114684	8116894	AT1TE26120	.	+	ATREP3	Helitron	RC	2210	medium	1439	high	6394828	chromoarm	626	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	8116904	8117010	AT1TE26125	.	+	ATREP1	Helitron	RC	106	short	498	high	6394712	chromoarm	510	no-CHH	no-CHH	.	.	.	.	.
Chr1	8160055	8160565	AT1TE26260	.	+	ATCOPIA42	Copia	LTR	510	short	35	low	6351157	chromoarm	1213	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	8160955	8161161	AT1TE26265	.	+	ATENSPM3	En-Spm	DNA	206	short	98	medium	6350561	chromoarm	1252	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	8161412	8161974	AT1TE26270	.	+	ATREP3	Helitron	RC	562	short	1439	high	6349748	chromoarm	439	no-CHH	no-CHH	.	.	.	.	.
Chr1	8161974	8162067	AT1TE26275	.	+	TNAT1A	.	DNA	93	tiny	162	medium	6349655	chromoarm	346	no-CHH	no-CHH	.	.	.	.	.
Chr1	8162067	8162091	AT1TE26280	.	+	ATREP10B	Helitron	RC	24	tiny	491	high	6349631	chromoarm	322	DCL3-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	8165554	8166249	AT1TE26290	.	-	HELITRONY1D	Helitron	RC	695	short	756	high	6345473	chromoarm	95	no-CHH	no-CHH	.	.	.	.	.
Chr1	8169456	8169558	AT1TE26300	.	+	ATREP7	Helitron	RC	102	short	164	medium	6342164	chromoarm	340	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	8169558	8170783	AT1TE26305	.	+	ATREP7	Helitron	RC	1225	short	164	medium	6340939	chromoarm	162	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	8178349	8178524	AT1TE26320	.	+	ATLINE1_3A	L1	LINE	175	short	160	medium	6333198	chromoarm	353	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	8189445	8189478	AT1TE26360	.	+	ATREP3	Helitron	RC	33	tiny	1439	high	6322244	chromoarm	491	no-CHH	no-CHH	.	.	.	.	.
Chr1	8189478	8189828	AT1TE26365	.	-	HELITRON4	Helitron	RC	350	short	199	medium	6321894	chromoarm	524	no-CHH	no-CHH	.	.	.	.	.
Chr1	8189828	8190549	AT1TE26370	.	+	ATREP2A	Helitron	RC	721	short	116	medium	6321173	chromoarm	874	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	8190549	8190604	AT1TE26375	.	+	ATREP2A	Helitron	RC	55	tiny	116	medium	6321118	chromoarm	1595	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	8193019	8193117	AT1TE26380	.	-	ATCOPIA28	Copia	LTR	98	tiny	81	medium	6318605	chromoarm	2749	no-CHH	no-CHH	.	.	.	.	.
Chr1	8203656	8203778	AT1TE26410	.	-	ATTIRX1A	.	DNA	122	short	63	medium	6307944	chromoarm	183	no-CHH	no-CHH	.	.	.	.	.
Chr1	8235533	8235851	AT1TE26510	.	+	ATREP10C	Helitron	RC	318	short	123	medium	6275871	chromoarm	682	no-CHH	no-CHH	.	.	.	.	.
Chr1	8235851	8237517	AT1TE26515	.	+	ATREP8	Helitron	RC	1666	short	75	medium	6274205	chromoarm	1000	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	8237517	8237720	AT1TE26520	.	+	ATREP15	Helitron	RC	203	short	1003	high	6274002	chromoarm	2453	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	8237720	8237857	AT1TE26525	.	-	HELITRONY3	Helitron	RC	137	short	1399	high	6273865	chromoarm	2316	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	8238431	8238454	AT1TE26530	.	-	ARNOLDY2	MuDR	DNA	23	tiny	288	high	6273268	chromoarm	1719	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	8238454	8239849	AT1TE26535	.	-	HELITRONY3	Helitron	RC	1395	short	1399	high	6271873	chromoarm	324	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	8239849	8240013	AT1TE26540	.	+	ARNOLDY2	MuDR	DNA	164	short	288	high	6271709	chromoarm	160	no-CHH	no-CHH	.	.	.	.	.
Chr1	8260303	8260791	AT1TE26610	.	-	ATREP5	Helitron	RC	488	short	624	high	6250931	chromoarm	73	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	8266466	8266505	AT1TE26620	.	-	SIMPLEGUY1	Harbinger	DNA	39	tiny	116	medium	6245217	chromoarm	418	no-CHH	no-CHH	.	.	.	.	.
Chr1	8266506	8267531	AT1TE26625	.	-	SIMPLEHAT2	HAT	DNA	1026	short	73	medium	6244191	chromoarm	457	.	.	.	.	.	.	.
Chr1	8267531	8267856	AT1TE26630	.	-	HELITRONY3	Helitron	RC	325	short	1399	high	6243866	chromoarm	863	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	8276346	8276494	AT1TE26660	.	-	HELITRONY3	Helitron	RC	148	short	1399	high	6235228	chromoarm	996	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	8276494	8277489	AT1TE26665	.	-	HELITRONY3	Helitron	RC	995	short	1399	high	6234233	chromoarm	1144	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	8277489	8277588	AT1TE26670	.	+	HELITRONY3	Helitron	RC	99	tiny	1399	high	6234134	chromoarm	2139	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	8277588	8279056	AT1TE26675	.	+	SIMPLEGUY1	Harbinger	DNA	1468	short	116	medium	6232666	chromoarm	817	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	8287384	8288211	AT1TE26700	.	-	ATREP10B	Helitron	RC	827	short	491	high	6223511	chromoarm	856	no-CHH	no-CHH	.	.	.	.	.
Chr1	8288211	8288747	AT1TE26705	.	+	HELITRONY3	Helitron	RC	536	short	1399	high	6222975	chromoarm	1683	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	8288747	8289831	AT1TE26710	.	+	ATREP10D	Helitron	RC	1084	short	1295	high	6221891	chromoarm	2219	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	8289831	8289870	AT1TE26715	.	-	ATREP3	Helitron	RC	39	tiny	1439	high	6221852	chromoarm	3303	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	8289870	8290484	AT1TE26720	.	+	ATHATN7	HAT	DNA	614	short	71	medium	6221238	chromoarm	3211	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	8290484	8290535	AT1TE26725	.	-	ATREP10A	Helitron	RC	51	tiny	279	high	6221187	chromoarm	3160	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	8290536	8290584	AT1TE26730	.	-	HELITRONY1E	Helitron	RC	49	tiny	447	high	6221138	chromoarm	3111	.	.	.	.	.	.	.
Chr1	8290584	8292025	AT1TE26735	.	+	ATREP3	Helitron	RC	1441	short	1439	high	6219697	chromoarm	1670	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	8292025	8292217	AT1TE26740	.	-	ATREP4	Helitron	RC	192	short	832	high	6219505	chromoarm	1478	no-CHH	no-CHH	.	.	.	.	.
Chr1	8322275	8322411	AT1TE26840	.	+	ATENSPM10	En-Spm	DNA	136	short	81	medium	6189311	chromoarm	0	no-CHH	no-RdDM	.	.	.	.	.
Chr1	8339258	8339599	AT1TE26900	.	-	ATTIRX1A	.	DNA	341	short	63	medium	6172123	chromoarm	68	no-CHH	no-CHH	.	.	.	.	.
Chr1	8374591	8374611	AT1TE27020	.	+	HELITRONY1B	Helitron	RC	20	tiny	414	high	6137111	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	8374611	8374634	AT1TE27025	.	+	HELITRONY3	Helitron	RC	23	tiny	1399	high	6137088	chromoarm	0	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	8374634	8375371	AT1TE27030	.	+	HELITRONY3	Helitron	RC	737	short	1399	high	6136351	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	8375371	8375449	AT1TE27035	.	-	ATREP10B	Helitron	RC	78	tiny	491	high	6136273	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	8383168	8383410	AT1TE27060	.	-	ATHATN9	HAT	DNA	242	short	12	low	6128312	chromoarm	1203	no-CHH	no-CHH	.	.	.	.	.
Chr1	8391453	8391610	AT1TE27090	.	+	ATREP5	Helitron	RC	157	short	624	high	6120112	chromoarm	111	no-RdDM	no-CHH	.	.	.	.	.
Chr1	8391610	8392741	AT1TE27095	.	+	ATREP4	Helitron	RC	1131	short	832	high	6118981	chromoarm	268	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	8392154	8392420	AT1TE27100	.	+	ATLINE1A	L1	LINE	266	short	289	high	6119302	chromoarm	766	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	8419004	8419254	AT1TE27190	.	+	ARNOLDY2	MuDR	DNA	250	short	288	high	6092468	chromoarm	438	no-CHH	no-CHH	.	.	.	.	.
Chr1	8447528	8448339	AT1TE27280	.	+	ATREP10B	Helitron	RC	811	short	491	high	6063383	chromoarm	376	no-CHH	no-CHH	.	.	.	.	.
Chr1	8448339	8448464	AT1TE27285	.	-	BRODYAGA2	MuDR	DNA	125	short	525	high	6063258	chromoarm	1187	no-CHH	no-CHH	.	.	.	.	.
Chr1	8453485	8461797	AT1TE27295	.	+	VANDAL6	MuDR	DNA	8312	long	89	medium	6049925	chromoarm	141	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	8453662,8457298,8461542	8456718,8458332,8458934	+,+,-	transcript_id-"640c408b-a498-4b12-9eef-daf599c37e70|4",transcript_id-"f7e61707-33f8-4844-8517-e4046cf07c90|11",transcript_id-"7f913d03-4a62-4695-9997-cfe4cde0f605|4"
Chr1	8461418	8461481	AT1TE27300	.	+	VANDAL6	MuDR	DNA	63	tiny	89	medium	6050241	chromoarm	457	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	8471384	8471416	AT1TE27330	.	-	ATREP10B	Helitron	RC	32	tiny	491	high	6040306	chromoarm	31	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	8471416	8472049	AT1TE27335	.	-	ATREP3	Helitron	RC	633	short	1439	high	6039673	chromoarm	63	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	8472049	8473869	AT1TE27340	.	+	ATREP3	Helitron	RC	1820	short	1439	high	6037853	chromoarm	696	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	8475176	8475479	AT1TE27345	.	-	ATREP16	MuDR	DNA	303	short	47	low	6036243	chromoarm	3147	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	8476058	8476379	AT1TE27350	.	+	ATREP16	MuDR	DNA	321	short	47	low	6035343	chromoarm	2247	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	8477751	8477946	AT1TE27355	.	+	ATIS112A	Harbinger	DNA	195	short	173	medium	6033776	chromoarm	680	no-CHH	no-CHH	.	.	.	.	.
Chr1	8478085	8478120	AT1TE27360	.	-	ATHATN10	HAT	DNA	35	tiny	48	low	6033602	chromoarm	506	no-CHH	no-CHH	.	.	.	.	.
Chr1	8478120	8478236	AT1TE27365	.	-	ATHATN10	HAT	DNA	116	short	48	low	6033486	chromoarm	390	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	8488222	8489149	AT1TE27390	.	-	HELITRONY1D	Helitron	RC	927	short	756	high	6022573	chromoarm	2234	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	8489149	8490468	AT1TE27395	.	-	ATREP3	Helitron	RC	1319	short	1439	high	6021254	chromoarm	3161	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	8490468	8490525	AT1TE27400	.	+	HELITRONY1A	Helitron	RC	57	tiny	271	high	6021197	chromoarm	4480	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	8490640	8492849	AT1TE27405	.	+	ATLINEIII	L1	LINE	2209	medium	196	medium	6018873	chromoarm	3207	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	8511780	8511905	AT1TE27460	.	+	ATREP10B	Helitron	RC	125	short	491	high	5999817	chromoarm	884	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	8511905	8511951	AT1TE27465	.	+	ATREP11	Helitron	RC	46	tiny	841	high	5999771	chromoarm	1009	no-CHH	no-CHH	.	.	.	.	.
Chr1	8511951	8513159	AT1TE27470	.	-	ATREP10D	Helitron	RC	1208	short	1295	high	5998563	chromoarm	1055	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr1	8515351	8515706	AT1TE27475	.	-	ATHILA7	Gypsy	LTR	355	short	134	medium	5996016	chromoarm	730	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	8538080	8538854	AT1TE27540	.	-	ATREP10B	Helitron	RC	774	short	491	high	5972868	chromoarm	795	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	8538854	8538889	AT1TE27545	.	+	HELITRONY3	Helitron	RC	35	tiny	1399	high	5972833	chromoarm	1569	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	8538890	8539819	AT1TE27550	.	+	ATREP1	Helitron	RC	929	short	498	high	5971903	chromoarm	1220	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	8570675	8571137	AT1TE27650	.	-	ATREP11	Helitron	RC	462	short	841	high	5940585	chromoarm	35	no-CHH	no-CHH	.	.	.	.	.
Chr1	8573145	8573496	AT1TE27655	.	-	ATMUNX1	MuDR	DNA	351	short	155	medium	5938226	chromoarm	273	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	8573496	8573632	AT1TE27660	.	-	ATMUNX1	MuDR	DNA	136	short	155	medium	5938090	chromoarm	137	no-CHH	no-CHH	.	.	.	.	.
Chr1	8576450	8578073	AT1TE27665	.	-	ATREP7	Helitron	RC	1623	short	164	medium	5933649	chromoarm	584	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	8577913	8578020	AT1TE27670	.	-	ATREP7	Helitron	RC	107	short	164	medium	5933702	chromoarm	637	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	8578073	8578425	AT1TE27675	.	-	ATREP10D	Helitron	RC	352	short	1295	high	5933297	chromoarm	232	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr1	8582827	8582912	AT1TE27685	.	+	ATREP6	Helitron	RC	85	tiny	181	medium	5928810	chromoarm	414	no-CHH	no-CHH	.	.	.	.	.
Chr1	8582913	8583685	AT1TE27690	.	-	BRODYAGA2	MuDR	DNA	772	short	525	high	5928037	chromoarm	353	no-CHH	no-CHH	.	.	.	.	.
Chr1	8583685	8583718	AT1TE27695	.	+	ATREP10D	Helitron	RC	33	tiny	1295	high	5928004	chromoarm	320	no-CHH	no-CHH	.	.	.	.	.
Chr1	8620663	8624017	AT1TE27810	.	-	ATREP11	Helitron	RC	3354	medium	841	high	5887705	chromoarm	174	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	8621830	8621888	AT1TE27815	.	+	ATREP3	Helitron	RC	58	tiny	1439	high	5889834	chromoarm	1410	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	8622188	8622213	AT1TE27820	.	-	ATREP10D	Helitron	RC	25	tiny	1295	high	5889509	chromoarm	1768	no-RdDM	no-CHH	.	.	.	.	.
Chr1	8622213	8622246	AT1TE27825	.	+	ATREP10D	Helitron	RC	33	tiny	1295	high	5889476	chromoarm	1793	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	8622246	8623616	AT1TE27830	.	-	ATREP1	Helitron	RC	1370	short	498	high	5888106	chromoarm	575	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	8623616	8623666	AT1TE27835	.	-	ATREP1	Helitron	RC	50	tiny	498	high	5888056	chromoarm	525	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	8644470	8644567	AT1TE27900	.	-	ATREP7	Helitron	RC	98	tiny	164	medium	5867155	chromoarm	1186	.	.	.	.	.	.	.
Chr1	8644567	8645833	AT1TE27905	.	-	ATIS112A	Harbinger	DNA	1266	short	173	medium	5865889	chromoarm	791	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	8646049	8644596	-	transcript_id-"8288bd48-20f6-4fe6-b299-cc76f8f07f62|3"
Chr1	8649241	8649670	AT1TE27915	.	+	ATHPOGON1	Pogo	DNA	429	short	174	medium	5862052	chromoarm	407	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	8649670	8649768	AT1TE27920	.	-	BRODYAGA1A	MuDR	DNA	98	tiny	586	high	5861954	chromoarm	836	no-CHH	no-CHH	.	.	.	.	.
Chr1	8650081	8650509	AT1TE27925	.	-	ATREP10C	Helitron	RC	428	short	123	medium	5861213	chromoarm	1053	no-CHH	no-CHH	.	.	.	.	.
Chr1	8654078	8654425	AT1TE27935	.	-	BRODYAGA1A	MuDR	DNA	347	short	586	high	5857297	chromoarm	517	no-CHH	no-CHH	.	.	.	.	.
Chr1	8656021	8656206	AT1TE27940	.	-	ATLINE1_3A	L1	LINE	185	short	160	medium	5855516	chromoarm	480	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	8690433	8690922	AT1TE28050	.	+	ATREP19	.	DNA	489	short	189	medium	5820800	chromoarm	1375	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	8691107	8691669	AT1TE28055	.	-	ATREP10A	Helitron	RC	562	short	279	high	5820053	chromoarm	1617	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	8713282	8713751	AT1TE28120	.	-	BRODYAGA2	MuDR	DNA	469	short	525	high	5797971	chromoarm	297	no-CHH	no-CHH	.	.	.	.	.
Chr1	8729234	8729255	AT1TE28170	.	+	TA11	L1	LINE	21	tiny	157	medium	5782467	chromoarm	2596	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	8729255	8733277	AT1TE28175	.	+	TA11	L1	LINE	4022	medium	157	medium	5778445	chromoarm	1292	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	8757563	8757756	AT1TE28250	.	-	ATDNA12T3_2	.	DNA	193	short	660	high	5753966	chromoarm	220	no-CHH	no-CHH	.	.	.	.	.
Chr1	8778395	8778654	AT1TE28320	.	+	TAT1_ATH	Gypsy	LTR	260	short	87	medium	5733068	chromoarm	0	.	.	.	.	.	.	.
Chr1	8778655	8778970	AT1TE28325	.	+	TAT1_ATH	Gypsy	LTR	316	short	87	medium	5732752	chromoarm	0	.	.	.	.	.	.	.
Chr1	8779151	8779236	AT1TE28330	.	+	ATLANTYS3	Gypsy	LTR	86	tiny	142	medium	5732486	chromoarm	0	.	.	.	.	.	.	.
Chr1	8779415	8779452	AT1TE28335	.	-	VANDAL6	MuDR	DNA	38	tiny	89	medium	5732270	chromoarm	0	.	.	.	.	.	.	.
Chr1	8790240	8797988	AT1TE28370	.	-	VANDAL5	MuDR	DNA	7748	long	85	medium	5713734	chromoarm	567	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	8791595	8792382	AT1TE28375	.	+	VANDAL4	MuDR	DNA	787	short	102	medium	5719340	chromoarm	3681	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	8793537	8794372	AT1TE28380	.	+	VANDAL4	MuDR	DNA	835	short	102	medium	5717350	chromoarm	4183	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	8797988	8798224	AT1TE28390	.	-	VANDAL5A	MuDR	DNA	236	short	56	medium	5713498	chromoarm	331	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	8800897	8801182	AT1TE28395	.	+	TAT1_ATH	Gypsy	LTR	286	short	87	medium	5710540	chromoarm	0	.	.	.	.	.	.	.
Chr1	8801183	8801459	AT1TE28400	.	+	TAT1_ATH	Gypsy	LTR	277	short	87	medium	5710263	chromoarm	0	.	.	.	.	.	.	.
Chr1	8801679	8801764	AT1TE28405	.	+	ATLANTYS3	Gypsy	LTR	86	tiny	142	medium	5709958	chromoarm	0	.	.	.	.	.	.	.
Chr1	8801943	8801980	AT1TE28410	.	-	VANDAL6	MuDR	DNA	38	tiny	89	medium	5709742	chromoarm	0	.	.	.	.	.	.	.
Chr1	8815275	8815560	AT1TE28450	.	+	TAT1_ATH	Gypsy	LTR	286	short	87	medium	5696162	chromoarm	0	.	.	.	.	.	.	.
Chr1	8815561	8815837	AT1TE28455	.	+	TAT1_ATH	Gypsy	LTR	277	short	87	medium	5695885	chromoarm	0	.	.	.	.	.	.	.
Chr1	8816057	8816142	AT1TE28460	.	+	ATLANTYS3	Gypsy	LTR	86	tiny	142	medium	5695580	chromoarm	94	.	.	.	.	.	.	.
Chr1	8816321	8816358	AT1TE28465	.	-	VANDAL6	MuDR	DNA	38	tiny	89	medium	5695364	chromoarm	358	.	.	.	.	.	.	.
Chr1	8829653	8829938	AT1TE28500	.	+	TAT1_ATH	Gypsy	LTR	286	short	87	medium	5681784	chromoarm	0	.	.	.	.	.	.	.
Chr1	8829939	8830254	AT1TE28505	.	+	TAT1_ATH	Gypsy	LTR	316	short	87	medium	5681468	chromoarm	0	.	.	.	.	.	.	.
Chr1	8830435	8830520	AT1TE28510	.	+	ATLANTYS3	Gypsy	LTR	86	tiny	142	medium	5681202	chromoarm	94	.	.	.	.	.	.	.
Chr1	8830699	8830736	AT1TE28515	.	-	VANDAL6	MuDR	DNA	38	tiny	89	medium	5680986	chromoarm	358	.	.	.	.	.	.	.
Chr1	8851192	8851341	AT1TE28580	.	+	ATDNAI27T9C	MuDR	DNA	149	short	108	medium	5660381	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	8862643	8863519	AT1TE28620	.	-	ATREP5	Helitron	RC	876	short	624	high	5648203	chromoarm	1441	no-CHH	no-CHH	.	.	.	.	.
Chr1	8869579	8869748	AT1TE28630	.	-	VANDAL22	MuDR	DNA	169	short	48	low	5641974	chromoarm	634	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	8870368	8871513	AT1TE28635	.	+	ATREP10D	Helitron	RC	1146	short	1295	high	5640209	chromoarm	54	.	.	.	.	.	.	.
Chr1	8872902	8873158	AT1TE28640	.	+	ATREP10D	Helitron	RC	256	short	1295	high	5638564	chromoarm	516	no-CHH	no-CHH	.	.	.	.	.
Chr1	8873158	8873202	AT1TE28645	.	-	ATREP5	Helitron	RC	44	tiny	624	high	5638520	chromoarm	772	no-CHH	no-CHH	.	.	.	.	.
Chr1	8873202	8873826	AT1TE28650	.	-	ATDNA2T9C	MuDR	DNA	624	short	242	high	5637896	chromoarm	297	no-CHH	no-CHH	.	.	.	.	.
Chr1	8873826	8874140	AT1TE28655	.	+	ATREP3	Helitron	RC	314	short	1439	high	5637582	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	8883662	8884111	AT1TE28680	.	+	HELITRONY1D	Helitron	RC	449	short	756	high	5627611	chromoarm	1098	no-CHH	no-CHH	.	.	.	.	.
Chr1	8919855	8920080	AT1TE28800	.	+	ATCOPIA34	Copia	LTR	225	short	16	low	5591642	chromoarm	445	no-CHH	no-CHH	.	.	.	.	.
Chr1	8927731	8933058	AT1TE28830	.	-	Unassigned	.	Unassigned	5327	long	.	low	5578664	chromoarm	880	no-RdDM	no-RdDM	ExpressedAndAnnotated	8928168	8927598	-	transcript_id-"e2897903-a1f0-4a63-a68d-e2cd80e9a648|4"
Chr1	8935686	8936138	AT1TE28835	.	-	ATREP1	Helitron	RC	452	short	498	high	5575584	chromoarm	402	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	9000000	9001095	AT1TE29040	.	-	ATREP10D	Helitron	RC	1095	short	1295	high	5510627	chromoarm	400	no-CHH	no-CHH	.	.	.	.	.
Chr1	9001440	9001749	AT1TE29045	.	-	ATCOPIA35	Copia	LTR	309	short	22	low	5509973	chromoarm	782	no-CHH	no-CHH	.	.	.	.	.
Chr1	9004806	9004833	AT1TE29055	.	+	VANDAL2N1	MuDR	DNA	27	tiny	51	medium	5506889	chromoarm	256	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	9004835	9015724	AT1TE29060	.	+	VANDAL2	MuDR	DNA	10889	long	43	low	5495998	chromoarm	285	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	9018455	9018550	AT1TE29065	.	-	ATREP3	Helitron	RC	95	tiny	1439	high	5493172	chromoarm	1005	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	9018550	9019574	AT1TE29070	.	+	ATREP10B	Helitron	RC	1024	short	491	high	5492148	chromoarm	934	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	9023712	9023800	AT1TE29080	.	-	ATDNAI27T9A	MuDR	DNA	88	tiny	116	medium	5487922	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	9042256	9042440	AT1TE29140	.	-	VANDAL1	MuDR	DNA	184	short	80	medium	5469282	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	9042441	9042476	AT1TE29145	.	-	VANDAL1	MuDR	DNA	36	tiny	80	medium	5469246	chromoarm	0	.	.	LowExpressed	.	.	.	.
Chr1	9061169	9061472	AT1TE29200	.	+	ATREP5	Helitron	RC	303	short	624	high	5450250	chromoarm	736	no-CHH	no-CHH	.	.	.	.	.
Chr1	9062304	9062678	AT1TE29205	.	+	ATREP3	Helitron	RC	374	short	1439	high	5449044	chromoarm	792	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	9080537	9080869	AT1TE29260	.	-	HELITRON4	Helitron	RC	332	short	199	medium	5430853	chromoarm	961	no-CHH	no-CHH	.	.	.	.	.
Chr1	9082621	9082919	AT1TE29265	.	+	ATREP16	MuDR	DNA	299	short	47	low	5428803	chromoarm	983	.	.	.	.	.	.	.
Chr1	9117489	9117606	AT1TE29370	.	+	VANDAL18NB	MuDR	DNA	117	short	19	low	5394116	chromoarm	343	no-CHH	no-CHH	.	.	.	.	.
Chr1	9119529	9119929	AT1TE29375	.	+	HELITRONY3	Helitron	RC	400	short	1399	high	5391793	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	9125656	9125776	AT1TE29385	.	-	ATREP10A	Helitron	RC	120	short	279	high	5385946	chromoarm	288	no-CHH	no-CHH	.	.	.	.	.
Chr1	9125776	9126902	AT1TE29390	.	-	HELITRONY3	Helitron	RC	1126	short	1399	high	5384820	chromoarm	0	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	9129201	9129588	AT1TE29395	.	+	ATDNA2T9C	MuDR	DNA	387	short	242	high	5382134	chromoarm	575	no-CHH	no-CHH	.	.	.	.	.
Chr1	9135711	9136880	AT1TE29410	.	-	ATREP9	Helitron	RC	1169	short	201	high	5374842	chromoarm	837	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	9135756	9136720	AT1TE29415	.	-	ATREP9	Helitron	RC	964	short	201	high	5375002	chromoarm	882	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	9136880	9137784	AT1TE29420	.	-	ATREP4	Helitron	RC	904	short	832	high	5373938	chromoarm	989	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	9137784	9138030	AT1TE29425	.	-	HELITRONY1B	Helitron	RC	246	short	414	high	5373692	chromoarm	743	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	9138209	9138321	AT1TE29430	.	-	ATREP7	Helitron	RC	112	short	164	medium	5373401	chromoarm	452	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	9145964	9146081	AT1TE29460	.	-	ATREP15	Helitron	RC	117	short	1003	high	5365641	chromoarm	291	no-CHH	no-CHH	.	.	.	.	.
Chr1	9146081	9146256	AT1TE29465	.	-	ARNOLDY2	MuDR	DNA	175	short	288	high	5365466	chromoarm	408	no-CHH	no-CHH	.	.	.	.	.
Chr1	9146256	9146286	AT1TE29470	.	+	ARNOLDY2	MuDR	DNA	30	tiny	288	high	5365436	chromoarm	583	no-CHH	no-CHH	.	.	.	.	.
Chr1	9146286	9147162	AT1TE29475	.	+	ARNOLDY2	MuDR	DNA	876	short	288	high	5364560	chromoarm	613	no-CHH	no-CHH	.	.	.	.	.
Chr1	9147162	9147189	AT1TE29480	.	-	HELITRONY1B	Helitron	RC	27	tiny	414	high	5364533	chromoarm	1489	no-CHH	no-CHH	.	.	.	.	.
Chr1	9147858	9148173	AT1TE29485	.	+	ATHATN3	HAT	DNA	315	short	70	medium	5363549	chromoarm	829	no-CHH	no-CHH	.	.	.	.	.
Chr1	9154728	9154986	AT1TE29500	.	-	ATTIRX1B	.	DNA	258	short	44	low	5356736	chromoarm	147	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	9163142	9163284	AT1TE29530	.	-	ATHILA7	Gypsy	LTR	142	short	134	medium	5348438	chromoarm	163	no-CHH	no-CHH	.	.	.	.	.
Chr1	9175322	9177761	AT1TE29570	.	+	HARBINGER	Harbinger	DNA	2439	medium	90	medium	5333961	chromoarm	751	no-RdDM	no-RdDM	ExpressedAndAnnotated	9175591,9175595,9175601	9177612,9177612,9177551	+,+,+	transcript_id-"8fef6e64-9ca9-49f0-bc5f-4d841bb97dc3|110",transcript_id-"a0818467-ec4b-4f80-859b-6b5e57e0ddad|3",transcript_id-"202053ef-301c-4362-a856-2c8d65826aac|3"
Chr1	9177761	9178303	AT1TE29575	.	-	ATREP10D	Helitron	RC	542	short	1295	high	5333419	chromoarm	209	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	9187419	9187605	AT1TE29600	.	-	ATREP4	Helitron	RC	186	short	832	high	5324117	chromoarm	206	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	9187619	9188638	AT1TE29605	.	+	ATMUN1	MuDR	DNA	1019	short	107	medium	5323084	chromoarm	406	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	9188638	9188764	AT1TE29610	.	+	ATREP15	Helitron	RC	126	short	1003	high	5322958	chromoarm	859	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	9200277	9200364	AT1TE29650	.	-	BRODYAGA1	MuDR	DNA	87	tiny	251	high	5311358	chromoarm	1558	no-CHH	no-CHH	.	.	.	.	.
Chr1	9200364	9200536	AT1TE29655	.	+	HELITRONY3	Helitron	RC	172	short	1399	high	5311186	chromoarm	1645	no-CHH	no-CHH	.	.	.	.	.
Chr1	9200536	9201450	AT1TE29660	.	-	ATREP15	Helitron	RC	914	short	1003	high	5310272	chromoarm	1817	no-CHH	no-CHH	.	.	.	.	.
Chr1	9204215	9205113	AT1TE29665	.	+	HELITRONY2	Helitron	RC	898	short	198	medium	5306609	chromoarm	854	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	9205729	9205798	AT1TE29670	.	+	SIMPLEHAT1	HAT	DNA	69	tiny	56	medium	5305924	chromoarm	169	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	9218630	9219110	AT1TE29710	.	-	ATREP3	Helitron	RC	480	short	1439	high	5292612	chromoarm	441	no-CHH	no-CHH	.	.	.	.	.
Chr1	9235668	9235746	AT1TE29760	.	-	ARNOLDY1	MuDR	DNA	78	tiny	237	high	5275976	chromoarm	856	no-CHH	no-CHH	.	.	.	.	.
Chr1	9235746	9235932	AT1TE29765	.	-	ARNOLDY2	MuDR	DNA	186	short	288	high	5275790	chromoarm	934	no-CHH	no-CHH	.	.	.	.	.
Chr1	9235932	9237369	AT1TE29770	.	-	ARNOLDY2	MuDR	DNA	1437	short	288	high	5274353	chromoarm	1120	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	9255425	9256534	AT1TE29830	.	-	ATREP11	Helitron	RC	1109	short	841	high	5255188	chromoarm	1283	no-CHH	no-CHH	.	.	.	.	.
Chr1	9277960	9278688	AT1TE29900	.	+	ATREP11	Helitron	RC	728	short	841	high	5233034	chromoarm	269	no-CHH	no-CHH	.	.	.	.	.
Chr1	9278688	9279001	AT1TE29905	.	+	BRODYAGA1A	MuDR	DNA	313	short	586	high	5232721	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	9282934	9282960	AT1TE29915	.	+	BRODYAGA2	MuDR	DNA	26	tiny	525	high	5228762	chromoarm	679	no-CHH	no-CHH	.	.	.	.	.
Chr1	9282960	9283901	AT1TE29920	.	-	ATREP3	Helitron	RC	941	short	1439	high	5227821	chromoarm	23	no-CHH	no-CHH	.	.	.	.	.
Chr1	9304764	9305904	AT1TE29990	.	-	ATLINE1A	L1	LINE	1140	short	289	high	5205818	chromoarm	1332	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	9305916	9306155	AT1TE29995	.	-	DT1	Mariner	DNA	239	short	123	medium	5205567	chromoarm	2484	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	9306155	9306506	AT1TE30000	.	+	HELITRON4	Helitron	RC	351	short	199	medium	5205216	chromoarm	2723	no-CHH	no-CHH	.	.	.	.	.
Chr1	9317324	9317486	AT1TE30040	.	-	HELITRONY1D	Helitron	RC	162	short	756	high	5194236	chromoarm	102	no-CHH	no-CHH	.	.	.	.	.
Chr1	9318359	9318496	AT1TE30045	.	+	VANDAL1	MuDR	DNA	137	short	80	medium	5193226	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	9326098	9327064	AT1TE30070	.	-	ATREP3	Helitron	RC	966	short	1439	high	5184658	chromoarm	91	no-CHH	no-CHH	.	.	.	.	.
Chr1	9331682	9332985	AT1TE30080	.	-	ATREP3	Helitron	RC	1303	short	1439	high	5178737	chromoarm	577	no-CHH	no-CHH	.	.	.	.	.
Chr1	9332985	9333312	AT1TE30085	.	+	ATREP15	Helitron	RC	327	short	1003	high	5178410	chromoarm	1880	no-CHH	no-CHH	.	.	.	.	.
Chr1	9335540	9335604	AT1TE30090	.	+	ATREP15	Helitron	RC	64	tiny	1003	high	5176118	chromoarm	606	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	9335610	9336202	AT1TE30095	.	+	BRODYAGA1A	MuDR	DNA	592	short	586	high	5175520	chromoarm	8	no-CHH	no-CHH	.	.	.	.	.
Chr1	9341444	9341548	AT1TE30105	.	-	ATCOPIA84	Copia	LTR	104	short	10	low	5170174	chromoarm	1644	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	9346151	9346739	AT1TE30115	.	-	HELITRONY1D	Helitron	RC	588	short	756	high	5164983	chromoarm	1189	no-CHH	no-CHH	.	.	.	.	.
Chr1	9353785	9354276	AT1TE30130	.	-	ATLINE2	L1	LINE	491	short	138	medium	5157446	chromoarm	1311	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	9365781	9366030	AT1TE30170	.	+	ATREP15	Helitron	RC	249	short	1003	high	5145692	chromoarm	171	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	9366030	9366599	AT1TE30175	.	+	ATREP10A	Helitron	RC	569	short	279	high	5145123	chromoarm	420	no-CHH	no-CHH	.	.	.	.	.
Chr1	9367250	9367448	AT1TE30180	.	+	ATREP10B	Helitron	RC	198	short	491	high	5144274	chromoarm	1640	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr1	9367448	9368006	AT1TE30185	.	+	ATREP11A	Helitron	RC	558	short	95	medium	5143716	chromoarm	1838	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	9368298	9368344	AT1TE30190	.	-	ATCOPIA61	Copia	LTR	46	tiny	12	low	5143378	chromoarm	2688	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	9368344	9373307	AT1TE30195	.	-	ATCOPIA16	Copia	LTR	4963	medium	12	low	5138415	chromoarm	760	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	9373308	9373343	AT1TE30200	.	-	ATCOPIA16	Copia	LTR	35	tiny	12	low	5138379	chromoarm	724	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	9381005	9381123	AT1TE30230	.	+	HELITRONY3A	Helitron	RC	118	short	49	low	5130599	chromoarm	586	no-CHH	no-CHH	.	.	.	.	.
Chr1	9383800	9384155	AT1TE30235	.	-	ATREP2	Helitron	RC	355	short	164	medium	5127567	chromoarm	88	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	9384159	9385031	AT1TE30240	.	-	ATREP1	Helitron	RC	872	short	498	high	5126691	chromoarm	447	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	9385032	9385167	AT1TE30245	.	+	ATREP5	Helitron	RC	135	short	624	high	5126555	chromoarm	1320	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	9385167	9386902	AT1TE30250	.	+	ATREP10D	Helitron	RC	1735	short	1295	high	5124820	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	9388398	9388759	AT1TE30255	.	+	ATREP5	Helitron	RC	361	short	624	high	5122963	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	9412333	9412459	AT1TE30330	.	+	RathE1_cons	.	RathE1_cons	126	short	213	high	5099263	chromoarm	558	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	9415935	9415989	AT1TE30340	.	+	ATREP4	Helitron	RC	54	tiny	832	high	5095733	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	9415989	9416022	AT1TE30345	.	+	AT9TSD1	MuDR	DNA	33	tiny	55	medium	5095700	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	9416022	9416970	AT1TE30350	.	+	HELITRONY1E	Helitron	RC	948	short	447	high	5094752	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	9417781	9417809	AT1TE30355	.	-	ATREP10D	Helitron	RC	28	tiny	1295	high	5093913	chromoarm	389	no-CHH	no-CHH	.	.	.	.	.
Chr1	9417809	9418062	AT1TE30360	.	+	HELITRONY1E	Helitron	RC	253	short	447	high	5093660	chromoarm	417	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	9418062	9419054	AT1TE30365	.	-	ATREP1	Helitron	RC	992	short	498	high	5092668	chromoarm	670	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	9419054	9419637	AT1TE30370	.	+	ATREP10B	Helitron	RC	583	short	491	high	5092085	chromoarm	1662	no-CHH	no-CHH	.	.	.	.	.
Chr1	9419637	9419949	AT1TE30375	.	+	ATREP10D	Helitron	RC	312	short	1295	high	5091773	chromoarm	1439	no-CHH	no-CHH	.	.	.	.	.
Chr1	9422395	9422477	AT1TE30380	.	+	ATREP18	.	DNA	82	tiny	391	high	5089245	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	9432182	9432422	AT1TE30410	.	+	ATTIRX1B	.	DNA	240	short	44	low	5079300	chromoarm	114	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	9440605	9440975	AT1TE30440	.	-	BRODYAGA1A	MuDR	DNA	370	short	586	high	5070747	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	9440975	9441014	AT1TE30445	.	+	ATREP1	Helitron	RC	39	tiny	498	high	5070708	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	9462956	9463496	AT1TE30510	.	-	ARNOLDY2	MuDR	DNA	540	short	288	high	5048226	chromoarm	309	no-CHH	no-CHH	.	.	.	.	.
Chr1	9467218	9468311	AT1TE30520	.	+	ATREP9	Helitron	RC	1093	short	201	high	5043411	chromoarm	142	no-CHH	no-CHH	.	.	.	.	.
Chr1	9468311	9468358	AT1TE30525	.	-	ATREP3	Helitron	RC	47	tiny	1439	high	5043364	chromoarm	209	no-CHH	no-CHH	.	.	.	.	.
Chr1	9476001	9480634	AT1TE30550	.	+	ATCOPIA3	Copia	LTR	4633	medium	8	low	5031088	chromoarm	1011	no-CHH	no-CHH	ExpressedAndAnnotated	9478607	9477795	-	transcript_id-"11727def-9d51-4beb-a5de-79c3afe3f446|3"
Chr1	9481853	9482068	AT1TE30555	.	+	ATENSPM2	En-Spm	DNA	215	short	114	medium	5029654	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	9547086	9547141	AT1TE30760	.	-	AT9TSD1	MuDR	DNA	55	tiny	55	medium	4964581	chromoarm	13	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr1	9547141	9547196	AT1TE30765	.	-	HELITRONY3	Helitron	RC	55	tiny	1399	high	4964526	chromoarm	68	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	9547196	9551187	AT1TE30770	.	-	HELITRONY3	Helitron	RC	3991	medium	1399	high	4960535	chromoarm	123	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	9565350	9565923	AT1TE30820	.	-	HELITRONY1C	Helitron	RC	573	short	120	medium	4945799	chromoarm	684	no-CHH	no-CHH	.	.	.	.	.
Chr1	9572800	9574191	AT1TE30840	.	-	ATREP15	Helitron	RC	1391	short	1003	high	4937531	chromoarm	518	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	9574361	9575371	AT1TE30845	.	-	HELITRON1	Helitron	RC	1010	short	130	medium	4936351	chromoarm	0	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	9578118	9578218	AT1TE30850	.	+	ATENSPM10	En-Spm	DNA	100	short	81	medium	4933504	chromoarm	0	RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr1	9582393	9582442	AT1TE30860	.	+	ATREP10D	Helitron	RC	49	tiny	1295	high	4929280	chromoarm	17	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	9582442	9582536	AT1TE30865	.	+	ATREP11	Helitron	RC	94	tiny	841	high	4929186	chromoarm	66	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	9582536	9582966	AT1TE30870	.	-	HELITRONY1A	Helitron	RC	430	short	271	high	4928756	chromoarm	160	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	9582975	9583971	AT1TE30875	.	+	ATLINE2	L1	LINE	996	short	138	medium	4927751	chromoarm	599	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	9583971	9585625	AT1TE30880	.	+	ATREP10D	Helitron	RC	1654	short	1295	high	4926097	chromoarm	1595	no-RdDM	no-CHH	.	.	.	.	.
Chr1	9585784	9585964	AT1TE30885	.	+	ATLINEIII	L1	LINE	180	short	196	medium	4925758	chromoarm	3408	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	9585964	9587249	AT1TE30890	.	-	ARNOLDY2	MuDR	DNA	1285	short	288	high	4924473	chromoarm	2683	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	9587249	9587684	AT1TE30895	.	-	ATREP7	Helitron	RC	435	short	164	medium	4924038	chromoarm	2248	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	9587684	9587875	AT1TE30900	.	-	ATREP9	Helitron	RC	191	short	201	high	4923847	chromoarm	2057	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	9587875	9587947	AT1TE30905	.	-	ATREP1	Helitron	RC	72	tiny	498	high	4923775	chromoarm	1985	no-CHH	no-CHH	.	.	.	.	.
Chr1	9618289	9618543	AT1TE31000	.	+	BRODYAGA1A	MuDR	DNA	254	short	586	high	4893179	chromoarm	2247	no-CHH	no-CHH	.	.	.	.	.
Chr1	9629581	9629650	AT1TE31040	.	+	HELITRONY3	Helitron	RC	69	tiny	1399	high	4882072	chromoarm	1168	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	9629650	9629939	AT1TE31045	.	+	ARNOLDY1	MuDR	DNA	289	short	237	high	4881783	chromoarm	1237	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	9642844	9643142	AT1TE31080	.	+	ATGP1	Gypsy	LTR	298	short	144	medium	4868580	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	9676476	9691257	AT1TE31190	.	-	VANDAL2	MuDR	DNA	14781	long	43	low	4820465	chromoarm	370	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	9682273,9687113	9683118,9685896	+,-	transcript_id-"3e230ff1-e95a-4b77-a927-efed6e95b7f1|5",transcript_id-"df726672-6c73-406b-996a-a40a26a1a872|4"
Chr1	9691257	9691303	AT1TE31195	.	-	VANDAL2	MuDR	DNA	46	tiny	43	low	4820419	chromoarm	324	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	9691303	9691418	AT1TE31200	.	-	VANDAL2N1	MuDR	DNA	115	short	51	medium	4820304	chromoarm	209	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	9744856	9745492	AT1TE31380	.	+	VANDAL4	MuDR	DNA	636	short	102	medium	4766230	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	9747390	9747715	AT1TE31385	.	+	HARBINGER	Harbinger	DNA	325	short	90	medium	4764007	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	9756655	9756816	AT1TE31410	.	+	ATCOPIA6	Copia	LTR	161	short	8	low	4754906	chromoarm	0	no-RdDM	no-CHH	.	.	.	.	.
Chr1	9761353	9761578	AT1TE31420	.	+	ATGP10	Gypsy	LTR	225	short	165	medium	4750144	chromoarm	445	PolIV-and-RDR6-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	9762607	9762754	AT1TE31425	.	+	RathE3_cons	.	RathE3_cons	147	short	104	medium	4748968	chromoarm	398	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	9786015	9786133	AT1TE31500	.	+	ATCOPIA28	Copia	LTR	118	short	81	medium	4725589	chromoarm	2151	no-CHH	no-CHH	.	.	.	.	.
Chr1	9788339	9789252	AT1TE31505	.	-	HELITRONY2	Helitron	RC	913	short	198	medium	4722470	chromoarm	573	no-CHH	no-CHH	.	.	.	.	.
Chr1	9807054	9807834	AT1TE31560	.	+	ATREP15	Helitron	RC	780	short	1003	high	4703888	chromoarm	222	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	9812381	9812585	AT1TE31570	.	+	ATIS112A	Harbinger	DNA	204	short	173	medium	4699137	chromoarm	633	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	9815534	9815681	AT1TE31575	.	+	ATREP10D	Helitron	RC	147	short	1295	high	4696041	chromoarm	391	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	9815681	9815773	AT1TE31580	.	+	ATREP3	Helitron	RC	92	tiny	1439	high	4695949	chromoarm	538	no-CHH	no-CHH	.	.	.	.	.
Chr1	9815773	9815821	AT1TE31585	.	-	HELITRONY3	Helitron	RC	48	tiny	1399	high	4695901	chromoarm	630	no-CHH	no-CHH	.	.	.	.	.
Chr1	9815821	9818677	AT1TE31590	.	+	ATREP3	Helitron	RC	2856	medium	1439	high	4693045	chromoarm	678	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	9818677	9818719	AT1TE31595	.	-	ATREP10D	Helitron	RC	42	tiny	1295	high	4693003	chromoarm	3534	no-CHH	no-CHH	.	.	.	.	.
Chr1	9835928	9836045	AT1TE31650	.	-	ATREP15	Helitron	RC	117	short	1003	high	4675677	chromoarm	86	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	9836045	9836130	AT1TE31655	.	-	ATREP3	Helitron	RC	85	tiny	1439	high	4675592	chromoarm	203	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	9836130	9837644	AT1TE31660	.	-	ATREP11	Helitron	RC	1514	short	841	high	4674078	chromoarm	288	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	9837660	9838227	AT1TE31665	.	+	ATREP3	Helitron	RC	567	short	1439	high	4673495	chromoarm	1159	no-CHH	no-CHH	.	.	.	.	.
Chr1	9838240	9838618	AT1TE31670	.	+	HELITRONY1A	Helitron	RC	378	short	271	high	4673104	chromoarm	768	no-CHH	no-CHH	.	.	.	.	.
Chr1	9848090	9848331	AT1TE31700	.	+	ATDNA2T9B	MuDR	DNA	241	short	26	low	4663391	chromoarm	275	no-CHH	no-CHH	.	.	.	.	.
Chr1	9853585	9854513	AT1TE31710	.	+	HELITRONY3	Helitron	RC	928	short	1399	high	4657209	chromoarm	84	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	9862556	9862652	AT1TE31740	.	+	HELITRONY1E	Helitron	RC	96	tiny	447	high	4649070	chromoarm	0	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	9862652	9862696	AT1TE31745	.	+	ATREP13	Helitron	RC	44	tiny	106	medium	4649026	chromoarm	0	PolIV-and-RDR6-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	9862696	9863641	AT1TE31750	.	+	ATREP13	Helitron	RC	945	short	106	medium	4648081	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	9863024	9863166	AT1TE31755	.	+	ATREP13	Helitron	RC	143	short	106	medium	4648556	chromoarm	0	.	.	.	.	.	.	.
Chr1	9863641	9863860	AT1TE31760	.	+	HELITRONY1D	Helitron	RC	219	short	756	high	4647862	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	9864971	9865345	AT1TE31765	.	-	ATREP2A	Helitron	RC	374	short	116	medium	4646377	chromoarm	417	no-CHH	no-CHH	.	.	.	.	.
Chr1	9865345	9865642	AT1TE31770	.	-	ATREP3	Helitron	RC	297	short	1439	high	4646080	chromoarm	791	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	9865642	9873666	AT1TE31775	.	+	ATREP3	Helitron	RC	8024	long	1439	high	4638056	chromoarm	0	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	9867365	9867414	AT1TE31780	.	-	ATREP3	Helitron	RC	49	tiny	1439	high	4644308	chromoarm	1106	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	9867414	9867437	AT1TE31785	.	+	ATREP3	Helitron	RC	23	tiny	1439	high	4644285	chromoarm	1083	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	9867437	9867556	AT1TE31790	.	-	HELITRONY1B	Helitron	RC	119	short	414	high	4644166	chromoarm	964	no-CHH	no-CHH	.	.	.	.	.
Chr1	9887399	9887507	AT1TE31860	.	+	ATCOPIA68	Copia	LTR	108	short	43	low	4624215	chromoarm	4	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	9893695	9894132	AT1TE31880	.	-	ATREP6	Helitron	RC	437	short	181	medium	4617590	chromoarm	2852	no-CHH	no-CHH	.	.	.	.	.
Chr1	9894132	9895243	AT1TE31885	.	-	ATREP10D	Helitron	RC	1111	short	1295	high	4616479	chromoarm	1810	no-CHH	no-CHH	.	.	.	.	.
Chr1	9899846	9899984	AT1TE31895	.	+	ATDNAI27T9C	MuDR	DNA	138	short	108	medium	4611738	chromoarm	8	no-CHH	no-CHH	.	.	.	.	.
Chr1	9900209	9900281	AT1TE31900	.	+	BRODYAGA2	MuDR	DNA	72	tiny	525	high	4611441	chromoarm	371	no-CHH	no-CHH	.	.	.	.	.
Chr1	9900281	9901174	AT1TE31905	.	+	HELITRONY3	Helitron	RC	893	short	1399	high	4610548	chromoarm	443	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	9902027	9902091	AT1TE31910	.	+	ATHILA4D_LTR	Gypsy	LTR	64	tiny	106	medium	4609631	chromoarm	1475	no-CHH	no-CHH	.	.	.	.	.
Chr1	9902091	9902764	AT1TE31915	.	+	ATHILA4D_LTR	Gypsy	LTR	673	short	106	medium	4608958	chromoarm	802	no-CHH	no-CHH	.	.	.	.	.
Chr1	9902764	9903407	AT1TE31920	.	-	ATREP15	Helitron	RC	643	short	1003	high	4608315	chromoarm	159	no-CHH	no-CHH	.	.	.	.	.
Chr1	9904437	9905000	AT1TE31925	.	+	HELITRONY1D	Helitron	RC	563	short	756	high	4606722	chromoarm	25	no-CHH	no-CHH	.	.	.	.	.
Chr1	9907901	9908868	AT1TE31930	.	+	ATCOPIA95	Copia	LTR	967	short	72	medium	4602854	chromoarm	151	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	9909362	9909762	AT1TE31935	.	+	ATCOPIA95	Copia	LTR	400	short	72	medium	4601960	chromoarm	235	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	9909762	9910259	AT1TE31940	.	-	ATREP10	Helitron	RC	497	short	63	medium	4601463	chromoarm	635	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	9910963	9911199	AT1TE31945	.	-	ATCOPIA46	Copia	LTR	236	short	7	low	4600523	chromoarm	1334	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	9913832	9913884	AT1TE31950	.	-	ATREP15	Helitron	RC	52	tiny	1003	high	4597838	chromoarm	147	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	9913884	9914254	AT1TE31955	.	+	HELITRONY3	Helitron	RC	370	short	1399	high	4597468	chromoarm	199	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	9914254	9914716	AT1TE31960	.	+	ATTIR16T3A	.	DNA	462	short	106	medium	4597006	chromoarm	569	no-RdDM	no-CHH	.	.	.	.	.
Chr1	9914716	9914902	AT1TE31965	.	+	ATREP3	Helitron	RC	186	short	1439	high	4596820	chromoarm	1031	no-CHH	no-CHH	.	.	.	.	.
Chr1	9915356	9916480	AT1TE31970	.	-	BRODYAGA1A	MuDR	DNA	1124	short	586	high	4595242	chromoarm	1671	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	9916480	9916577	AT1TE31975	.	-	BRODYAGA1A	MuDR	DNA	97	tiny	586	high	4595145	chromoarm	2795	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	9916577	9916827	AT1TE31980	.	-	BRODYAGA1	MuDR	DNA	250	short	251	high	4594895	chromoarm	2892	no-CHH	no-CHH	.	.	.	.	.
Chr1	9918157	9919330	AT1TE31985	.	-	ATREP2A	Helitron	RC	1173	short	116	medium	4592392	chromoarm	1342	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	9926835	9927006	AT1TE32000	.	-	ATLINE1_1	L1	LINE	171	short	61	medium	4584716	chromoarm	2488	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	9928213	9928416	AT1TE32005	.	+	ATCOPIA35	Copia	LTR	203	short	22	low	4583306	chromoarm	3703	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	9928423	9928443	AT1TE32010	.	+	ATCOPIA35	Copia	LTR	20	tiny	22	low	4583279	chromoarm	3676	no-CHH	no-RdDM	LowExpressed	.	.	.	.
Chr1	9928443	9931897	AT1TE32015	.	+	ATCOPIA64	Copia	LTR	3454	medium	13	low	4579825	chromoarm	222	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	9931897	9931937	AT1TE32020	.	+	ATCOPIA65	Copia	LTR	40	tiny	34	low	4579785	chromoarm	182	no-CHH	no-CHH	.	.	.	.	.
Chr1	9939336	9939673	AT1TE32040	.	+	HARBINGER	Harbinger	DNA	337	short	90	medium	4572049	chromoarm	501	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	9955183	9955238	AT1TE32090	.	+	HELITRONY1D	Helitron	RC	55	tiny	756	high	4556484	chromoarm	1112	no-CHH	no-CHH	.	.	.	.	.
Chr1	9955238	9956349	AT1TE32095	.	-	ATREP10D	Helitron	RC	1111	short	1295	high	4555373	chromoarm	1	no-CHH	no-CHH	.	.	.	.	.
Chr1	9957102	9957159	AT1TE32100	.	-	ATREP15	Helitron	RC	57	tiny	1003	high	4554563	chromoarm	251	no-CHH	no-CHH	.	.	.	.	.
Chr1	9957159	9957338	AT1TE32105	.	-	HELITRON4	Helitron	RC	179	short	199	medium	4554384	chromoarm	308	no-CHH	no-CHH	.	.	.	.	.
Chr1	9957338	9958844	AT1TE32110	.	+	HELITRONY3	Helitron	RC	1506	short	1399	high	4552878	chromoarm	487	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	9958844	9959136	AT1TE32115	.	-	ATREP4	Helitron	RC	292	short	832	high	4552586	chromoarm	1993	no-CHH	no-CHH	.	.	.	.	.
Chr1	9979708	9979897	AT1TE32180	.	+	ATENSPM5	En-Spm	DNA	189	short	111	medium	4531825	chromoarm	38	no-CHH	no-CHH	.	.	.	.	.
Chr1	9992077	9992656	AT1TE32220	.	+	BRODYAGA2	MuDR	DNA	579	short	525	high	4519066	chromoarm	329	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	9995552	9996478	AT1TE32225	.	-	ATREP3	Helitron	RC	926	short	1439	high	4515244	chromoarm	435	no-CHH	no-CHH	.	.	.	.	.
Chr1	9996478	9996758	AT1TE32230	.	+	ATREP3	Helitron	RC	280	short	1439	high	4514964	chromoarm	155	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	10007529	10008021	AT1TE32270	.	+	ATLINE1_5	L1	LINE	492	short	91	medium	4503701	chromoarm	751	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	10008021	10008663	AT1TE32275	.	+	ATHPOGON3	Pogo	DNA	642	short	118	medium	4503059	chromoarm	1243	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	10008663	10009012	AT1TE32280	.	-	ATREP4	Helitron	RC	349	short	832	high	4502710	chromoarm	1246	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	10021342	10021368	AT1TE32320	.	-	ATREP10D	Helitron	RC	26	tiny	1295	high	4490354	chromoarm	992	no-CHH	no-CHH	.	.	.	.	.
Chr1	10021368	10021965	AT1TE32325	.	-	ATREP2	Helitron	RC	597	short	164	medium	4489757	chromoarm	1018	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	10021965	10022005	AT1TE32330	.	-	ATREP11	Helitron	RC	40	tiny	841	high	4489717	chromoarm	1615	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	10025734	10025856	AT1TE32340	.	+	LIMPET1	MuDR	DNA	122	short	116	medium	4485866	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	10050433	10050646	AT1TE32420	.	+	ATTIRTA1	Tc1	DNA	213	short	95	medium	4461076	chromoarm	581	no-CHH	no-CHH	.	.	.	.	.
Chr1	10050990	10051205	AT1TE32425	.	-	DT1	Mariner	DNA	215	short	123	medium	4460517	chromoarm	22	no-CHH	no-CHH	.	.	.	.	.
Chr1	10060547	10060619	AT1TE32450	.	+	HELITRONY1D	Helitron	RC	72	tiny	756	high	4451103	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	10060619	10060876	AT1TE32455	.	-	RP1_AT	.	DNA	257	short	87	medium	4450846	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	10063057	10063257	AT1TE32460	.	-	ATLINE1_3A	L1	LINE	200	short	160	medium	4448465	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	10064688	10065436	AT1TE32465	.	-	ATREP11	Helitron	RC	748	short	841	high	4446286	chromoarm	1236	no-CHH	no-CHH	.	.	.	.	.
Chr1	10077085	10077308	AT1TE32500	.	-	ATTIRTA1	Tc1	DNA	223	short	95	medium	4434414	chromoarm	835	no-CHH	no-CHH	.	.	.	.	.
Chr1	10085501	10086130	AT1TE32530	.	-	ATREP10D	Helitron	RC	629	short	1295	high	4425592	chromoarm	543	no-CHH	no-CHH	.	.	.	.	.
Chr1	10114014	10114270	AT1TE32620	.	-	VANDAL17	MuDR	DNA	256	short	178	medium	4397452	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	10114659	10115025	AT1TE32625	.	+	ATMUNX1	MuDR	DNA	366	short	155	medium	4396697	chromoarm	319	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	10123474	10123504	AT1TE32650	.	+	ATREP9	Helitron	RC	30	tiny	201	high	4388218	chromoarm	572	no-CHH	no-CHH	.	.	.	.	.
Chr1	10123504	10124428	AT1TE32655	.	+	ATREP15	Helitron	RC	924	short	1003	high	4387294	chromoarm	95	no-CHH	no-CHH	.	.	.	.	.
Chr1	10144108	10144182	AT1TE32710	.	-	BRODYAGA1A	MuDR	DNA	74	tiny	586	high	4367540	chromoarm	3674	no-CHH	no-CHH	.	.	.	.	.
Chr1	10144182	10144531	AT1TE32715	.	-	ATDNA2T9C	MuDR	DNA	349	short	242	high	4367191	chromoarm	3325	no-RdDM	no-CHH	.	.	.	.	.
Chr1	10144531	10144558	AT1TE32720	.	-	BRODYAGA1A	MuDR	DNA	27	tiny	586	high	4367164	chromoarm	3298	no-CHH	no-CHH	.	.	.	.	.
Chr1	10152742	10152772	AT1TE32750	.	+	VANDAL1N1	MuDR	DNA	30	tiny	52	medium	4358950	chromoarm	1587	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	10152772	10154690	AT1TE32755	.	+	VANDAL1	MuDR	DNA	1918	short	80	medium	4357032	chromoarm	1617	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	10154690	10155086	AT1TE32760	.	+	VANDAL2N1	MuDR	DNA	396	short	51	medium	4356636	chromoarm	2407	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	10155200	10156790	AT1TE32765	.	+	VANDAL1N1	MuDR	DNA	1590	short	52	medium	4354932	chromoarm	703	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	10155604	10155652	AT1TE32770	.	+	VANDAL1N1	MuDR	DNA	48	tiny	52	medium	4356070	chromoarm	1841	no-RdDM	no-CHH	.	.	.	.	.
Chr1	10158869	10158914	AT1TE32780	.	+	ATREP11	Helitron	RC	45	tiny	841	high	4352808	chromoarm	195	no-CHH	no-CHH	.	.	.	.	.
Chr1	10158914	10160017	AT1TE32785	.	+	ATREP11A	Helitron	RC	1103	short	95	medium	4351705	chromoarm	240	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	10160017	10160728	AT1TE32790	.	+	ATREP11	Helitron	RC	711	short	841	high	4350994	chromoarm	1343	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	10160998	10161600	AT1TE32795	.	+	HELITRONY1C	Helitron	RC	602	short	120	medium	4350122	chromoarm	1502	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	10161609	10162336	AT1TE32800	.	+	ATREP11	Helitron	RC	727	short	841	high	4349386	chromoarm	766	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	10161624	10161834	AT1TE32805	.	+	ATREP11	Helitron	RC	210	short	841	high	4349888	chromoarm	1268	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	10167601	10167820	AT1TE32815	.	+	ATGP2	Gypsy	LTR	219	short	48	low	4343902	chromoarm	1263	no-CHH	no-CHH	.	.	.	.	.
Chr1	10170914	10171300	AT1TE32825	.	+	BRODYAGA1A	MuDR	DNA	386	short	586	high	4340422	chromoarm	382	no-CHH	no-CHH	.	.	.	.	.
Chr1	10185739	10186410	AT1TE32870	.	-	ATREP15	Helitron	RC	671	short	1003	high	4325312	chromoarm	1415	no-CHH	no-CHH	.	.	.	.	.
Chr1	10195874	10195903	AT1TE32900	.	+	ATREP11	Helitron	RC	29	tiny	841	high	4315819	chromoarm	974	no-CHH	no-RdDM	.	.	.	.	.
Chr1	10195903	10196603	AT1TE32905	.	+	HELITRONY1D	Helitron	RC	700	short	756	high	4315119	chromoarm	1003	no-CHH	no-CHH	.	.	.	.	.
Chr1	10205048	10205150	AT1TE32930	.	+	HELITRONY3	Helitron	RC	102	short	1399	high	4306572	chromoarm	1794	no-CHH	no-CHH	.	.	.	.	.
Chr1	10205150	10205810	AT1TE32935	.	+	ATREP10B	Helitron	RC	660	short	491	high	4305912	chromoarm	1896	no-CHH	no-CHH	.	.	.	.	.
Chr1	10205810	10205919	AT1TE32940	.	+	ATREP15	Helitron	RC	109	short	1003	high	4305803	chromoarm	2082	no-CHH	no-CHH	.	.	.	.	.
Chr1	10206712	10207010	AT1TE32945	.	-	SIMPLEHAT2	HAT	DNA	298	short	73	medium	4304712	chromoarm	991	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	10221013	10221279	AT1TE32990	.	+	ATSINE2A	.	SINE	266	short	33	low	4290443	chromoarm	2089	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	10221754	10222388	AT1TE32995	.	-	ATREP3	Helitron	RC	634	short	1439	high	4289334	chromoarm	1072	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	10222388	10222757	AT1TE33000	.	+	ATREP1	Helitron	RC	369	short	498	high	4288965	chromoarm	703	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	10231600	10231644	AT1TE33030	.	+	ATREP1	Helitron	RC	44	tiny	498	high	4280078	chromoarm	579	no-CHH	no-CHH	.	.	.	.	.
Chr1	10231644	10232308	AT1TE33035	.	+	BRODYAGA2	MuDR	DNA	664	short	525	high	4279414	chromoarm	623	no-CHH	no-CHH	.	.	.	.	.
Chr1	10234196	10234218	AT1TE33040	.	-	ATREP10D	Helitron	RC	22	tiny	1295	high	4277504	chromoarm	2370	no-CHH	no-CHH	.	.	.	.	.
Chr1	10234218	10234987	AT1TE33045	.	-	HELITRONY1B	Helitron	RC	769	short	414	high	4276735	chromoarm	1601	no-CHH	no-CHH	.	.	.	.	.
Chr1	10234987	10235015	AT1TE33050	.	-	ATREP10C	Helitron	RC	28	tiny	123	medium	4276707	chromoarm	1573	no-CHH	no-CHH	.	.	.	.	.
Chr1	10235015	10235039	AT1TE33055	.	+	ATREP10D	Helitron	RC	24	tiny	1295	high	4276683	chromoarm	1549	no-CHH	no-CHH	.	.	.	.	.
Chr1	10236376	10236490	AT1TE33060	.	+	ATDNAI27T9A	MuDR	DNA	114	short	116	medium	4275232	chromoarm	98	no-CHH	no-CHH	.	.	.	.	.
Chr1	10237611	10237792	AT1TE33065	.	-	ATMU11	MuDR	DNA	181	short	20	low	4273930	chromoarm	144	no-CHH	no-CHH	.	.	.	.	.
Chr1	10239033	10239320	AT1TE33070	.	+	HELITRONY1E	Helitron	RC	287	short	447	high	4272402	chromoarm	1566	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	10239320	10240195	AT1TE33075	.	+	ATREP1	Helitron	RC	875	short	498	high	4271527	chromoarm	1853	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	10240195	10240239	AT1TE33080	.	+	ATREP1	Helitron	RC	44	tiny	498	high	4271483	chromoarm	2728	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	10240239	10240617	AT1TE33085	.	+	ATREP5	Helitron	RC	378	short	624	high	4271105	chromoarm	2772	no-CHH	no-CHH	.	.	.	.	.
Chr1	10240617	10240783	AT1TE33090	.	+	HELITRONY1A	Helitron	RC	166	short	271	high	4270939	chromoarm	3150	no-CHH	no-CHH	.	.	.	.	.
Chr1	10263216	10263391	AT1TE33160	.	-	ATDNA12T3_2	.	DNA	175	short	660	high	4248331	chromoarm	1020	no-CHH	no-CHH	.	.	.	.	.
Chr1	10275030	10275149	AT1TE33200	.	+	ATLINE1_5	L1	LINE	119	short	91	medium	4236573	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	10275947	10275976	AT1TE33205	.	+	ATLINE1_5	L1	LINE	29	tiny	91	medium	4235746	chromoarm	408	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	10275976	10277727	AT1TE33210	.	+	ATLINE1_4	L1	LINE	1751	short	102	medium	4233995	chromoarm	352	no-CHH	no-CHH	.	.	.	.	.
Chr1	10294974	10295586	AT1TE33270	.	-	HELITRONY1B	Helitron	RC	612	short	414	high	4216136	chromoarm	1278	no-CHH	no-CHH	.	.	.	.	.
Chr1	10314611	10314648	AT1TE33330	.	+	ATREP11	Helitron	RC	37	tiny	841	high	4197074	chromoarm	1242	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	10314648	10314725	AT1TE33335	.	-	BRODYAGA2	MuDR	DNA	77	tiny	525	high	4196997	chromoarm	1279	no-CHH	no-CHH	.	.	.	.	.
Chr1	10314725	10315423	AT1TE33340	.	-	ATHPOGON3	Pogo	DNA	698	short	118	medium	4196299	chromoarm	1356	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	10315442	10315738	AT1TE33345	.	-	ATCOPIA54	Copia	LTR	296	short	18	low	4195984	chromoarm	2073	no-CHH	no-CHH	.	.	.	.	.
Chr1	10315743	10317790	AT1TE33350	.	+	ATCOPIA65	Copia	LTR	2047	medium	34	low	4193932	chromoarm	145	no-CHH	no-CHH	.	.	.	.	.
Chr1	10347111	10347383	AT1TE33450	.	+	VANDAL5	MuDR	DNA	273	short	85	medium	4164339	chromoarm	0	.	.	.	.	.	.	.
Chr1	10347383	10348529	AT1TE33455	.	+	VANDAL5A	MuDR	DNA	1146	short	56	medium	4163193	chromoarm	0	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	10348566	10348766	AT1TE33460	.	+	VANDAL4	MuDR	DNA	200	short	102	medium	4162956	chromoarm	0	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	10349200	10349353	AT1TE33465	.	+	VANDAL5	MuDR	DNA	153	short	85	medium	4162369	chromoarm	183	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	10357356	10363358	AT1TE33490	.	+	TA11	L1	LINE	6002	long	157	medium	4148364	chromoarm	975	no-RdDM	no-RdDM	ExpressedAndAnnotated	10357463	10359353	+	transcript_id-"6baaed6a-66b1-4166-84b8-6705f838536f|4"
Chr1	10370277	10370628	AT1TE33510	.	+	ATHAT10	HAT	DNA	351	short	35	low	4141094	chromoarm	1326	no-CHH	no-CHH	.	.	.	.	.
Chr1	10382583	10383371	AT1TE33550	.	-	ATREP3	Helitron	RC	788	short	1439	high	4128351	chromoarm	722	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr1	10383675	10383893	AT1TE33555	.	-	ATREP10A	Helitron	RC	218	short	279	high	4127829	chromoarm	1302	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	10421306	10421719	AT1TE33670	.	-	ATLINE1_2	L1	LINE	413	short	41	low	4090003	chromoarm	661	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	10442905	10442999	AT1TE33740	.	-	VANDAL8	MuDR	DNA	94	tiny	123	medium	4068723	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	10442999	10443478	AT1TE33745	.	+	BRODYAGA2	MuDR	DNA	479	short	525	high	4068244	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	10443986	10444101	AT1TE33750	.	+	RathE1_cons	.	RathE1_cons	115	short	213	high	4067621	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	10456763	10456841	AT1TE33790	.	-	VANDAL20	MuDR	DNA	78	tiny	51	medium	4054881	chromoarm	60	no-CHH	no-CHH	.	.	.	.	.
Chr1	10490252	10490333	AT1TE33900	.	-	ATREP3	Helitron	RC	81	tiny	1439	high	4021389	chromoarm	2164	no-CHH	no-CHH	.	.	.	.	.
Chr1	10490333	10491121	AT1TE33905	.	-	ATHPOGON3	Pogo	DNA	788	short	118	medium	4020601	chromoarm	1376	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	10491121	10491449	AT1TE33910	.	+	HELITRONY3	Helitron	RC	328	short	1399	high	4020273	chromoarm	1048	no-CHH	no-CHH	.	.	.	.	.
Chr1	10497530	10497719	AT1TE33920	.	+	ATREP16	MuDR	DNA	190	short	47	low	4014003	chromoarm	242	.	.	.	.	.	.	.
Chr1	10497746	10497855	AT1TE33925	.	+	ATREP16	MuDR	DNA	109	short	47	low	4013867	chromoarm	459	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	10506478	10506500	AT1TE33950	.	-	ATMU6N1	MuDR	DNA	22	tiny	39	low	4005222	chromoarm	484	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	10506500	10507368	AT1TE33955	.	-	BOMZH2	MuDR	DNA	868	short	47	low	4004354	chromoarm	297	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	10507368	10507412	AT1TE33960	.	-	ATMU6	MuDR	DNA	44	tiny	26	low	4004310	chromoarm	253	no-CHH	no-CHH	.	.	.	.	.
Chr1	10516926	10517405	AT1TE33990	.	-	ATREP15	Helitron	RC	479	short	1003	high	3994317	chromoarm	579	no-CHH	no-CHH	.	.	.	.	.
Chr1	10522217	10522868	AT1TE34000	.	-	ATCOPIA13	Copia	LTR	651	short	35	low	3988854	chromoarm	1002	no-CHH	no-CHH	.	.	.	.	.
Chr1	10524539	10524678	AT1TE34005	.	-	ATREP15	Helitron	RC	139	short	1003	high	3987044	chromoarm	3324	no-CHH	no-CHH	.	.	.	.	.
Chr1	10524678	10524717	AT1TE34010	.	+	BRODYAGA2	MuDR	DNA	39	tiny	525	high	3987005	chromoarm	3463	no-CHH	no-CHH	.	.	.	.	.
Chr1	10524717	10529695	AT1TE34015	.	+	HELITRONY3	Helitron	RC	4978	medium	1399	high	3982027	chromoarm	3502	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	10529695	10529862	AT1TE34020	.	+	HELITRONY3	Helitron	RC	167	short	1399	high	3981860	chromoarm	7906	no-RdDM	no-CHH	.	.	.	.	.
Chr1	10529862	10529905	AT1TE34025	.	+	HELITRONY3	Helitron	RC	43	tiny	1399	high	3981817	chromoarm	7863	no-CHH	no-CHH	.	.	.	.	.
Chr1	10529916	10530224	AT1TE34030	.	-	ATREP15	Helitron	RC	308	short	1003	high	3981498	chromoarm	7544	no-CHH	no-CHH	.	.	.	.	.
Chr1	10531553	10531664	AT1TE34035	.	+	ATLINE1_3A	L1	LINE	111	short	160	medium	3980058	chromoarm	6104	no-CHH	no-CHH	.	.	.	.	.
Chr1	10531994	10532076	AT1TE34040	.	+	ATLINE1_5	L1	LINE	82	tiny	91	medium	3979646	chromoarm	5692	no-RdDM	no-CHH	.	.	.	.	.
Chr1	10532076	10533434	AT1TE34045	.	+	ATLINE1_4	L1	LINE	1358	short	102	medium	3978288	chromoarm	4334	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	10533434	10533463	AT1TE34050	.	+	ATLINE1_6	L1	LINE	29	tiny	129	medium	3978259	chromoarm	4305	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	10533463	10533501	AT1TE34055	.	+	ATLINE1A	L1	LINE	38	tiny	289	high	3978221	chromoarm	4267	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	10554051	10554478	AT1TE34120	.	+	ATREP4	Helitron	RC	427	short	832	high	3957244	chromoarm	884	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	10554478	10555084	AT1TE34125	.	-	ATHPOGON1	Pogo	DNA	606	short	174	medium	3956638	chromoarm	1311	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	10555084	10555430	AT1TE34130	.	-	ATREP7	Helitron	RC	346	short	164	medium	3956292	chromoarm	1917	no-CHH	no-CHH	.	.	.	.	.
Chr1	10564718	10564875	AT1TE34160	.	-	ATREP19	.	DNA	157	short	189	medium	3946847	chromoarm	3776	no-CHH	no-CHH	.	.	.	.	.
Chr1	10564875	10565913	AT1TE34165	.	+	ATREP10D	Helitron	RC	1038	short	1295	high	3945809	chromoarm	3933	no-CHH	no-CHH	.	.	.	.	.
Chr1	10567971	10569320	AT1TE34170	.	+	ATREP6	Helitron	RC	1349	short	181	medium	3942402	chromoarm	2062	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	10569320	10569404	AT1TE34175	.	+	ATREP15	Helitron	RC	84	tiny	1003	high	3942318	chromoarm	1978	no-CHH	no-CHH	.	.	.	.	.
Chr1	10570148	10570425	AT1TE34180	.	+	ATLINE1_5	L1	LINE	277	short	91	medium	3941297	chromoarm	957	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	10578440	10579208	AT1TE34210	.	+	ATREP11A	Helitron	RC	768	short	95	medium	3932514	chromoarm	3491	no-CHH	no-CHH	.	.	.	.	.
Chr1	10579208	10580491	AT1TE34215	.	+	ATREP1	Helitron	RC	1283	short	498	high	3931231	chromoarm	2208	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	10591172	10591369	AT1TE34250	.	-	ATREP2A	Helitron	RC	197	short	116	medium	3920353	chromoarm	1950	no-CHH	no-CHH	.	.	.	.	.
Chr1	10591369	10591988	AT1TE34255	.	-	ATREP2	Helitron	RC	619	short	164	medium	3919734	chromoarm	2147	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	10591988	10592110	AT1TE34260	.	-	ATREP1	Helitron	RC	122	short	498	high	3919612	chromoarm	2766	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	10592110	10592664	AT1TE34265	.	-	BRODYAGA2	MuDR	DNA	554	short	525	high	3919058	chromoarm	2888	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	10593875	10594117	AT1TE34270	.	-	ATREP3	Helitron	RC	242	short	1439	high	3917605	chromoarm	2398	no-CHH	no-CHH	.	.	.	.	.
Chr1	10594117	10595604	AT1TE34275	.	-	ATREP7	Helitron	RC	1487	short	164	medium	3916118	chromoarm	911	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	10595604	10595772	AT1TE34280	.	+	HELITRONY1E	Helitron	RC	168	short	447	high	3915950	chromoarm	743	no-CHH	no-CHH	.	.	.	.	.
Chr1	10596061	10596335	AT1TE34285	.	-	ATDNA2T9C	MuDR	DNA	274	short	242	high	3915387	chromoarm	180	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	10597130	10597340	AT1TE34290	.	-	ATREP3	Helitron	RC	210	short	1439	high	3914382	chromoarm	35	no-CHH	no-CHH	.	.	.	.	.
Chr1	10597340	10598621	AT1TE34295	.	-	HELITRONY3	Helitron	RC	1281	short	1399	high	3913101	chromoarm	142	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	10597578	10598342	AT1TE34300	.	+	ATREP13	Helitron	RC	764	short	106	medium	3913380	chromoarm	421	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	10598621	10598763	AT1TE34305	.	+	ATREP13	Helitron	RC	142	short	106	medium	3912959	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	10602556	10604986	AT1TE34315	.	+	ATENSPM10	En-Spm	DNA	2430	medium	81	medium	3906736	chromoarm	1287	no-RdDM	no-RdDM	ExpressedAndAnnotated	10602833	10604575	+	transcript_id-"dfb560d4-c2a6-4b8f-8528-944c089e759e|4"
Chr1	10604986	10605010	AT1TE34320	.	+	ATENSPM10	En-Spm	DNA	24	tiny	81	medium	3906712	chromoarm	1263	PolIV-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	10610328	10610360	AT1TE34330	.	+	ATCOPIA83	Copia	LTR	32	tiny	7	low	3901362	chromoarm	799	no-CHH	no-CHH	.	.	.	.	.
Chr1	10610360	10614006	AT1TE34335	.	+	ATCOPIA26	Copia	LTR	3646	medium	19	low	3897716	chromoarm	831	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	10613008	10613053	AT1TE34340	.	+	ATCOPIA83	Copia	LTR	45	tiny	7	low	3898669	chromoarm	3479	no-CHH	no-CHH	.	.	.	.	.
Chr1	10614006	10614184	AT1TE34345	.	+	ATCOPIA83	Copia	LTR	178	short	7	low	3897538	chromoarm	4477	no-CHH	no-CHH	.	.	.	.	.
Chr1	10615680	10616327	AT1TE34350	.	-	ATREP3	Helitron	RC	647	short	1439	high	3895395	chromoarm	2638	no-CHH	no-CHH	.	.	.	.	.
Chr1	10621746	10622463	AT1TE34360	.	-	ATREP5	Helitron	RC	717	short	624	high	3889259	chromoarm	1944	no-CHH	no-CHH	.	.	.	.	.
Chr1	10623649	10624994	AT1TE34365	.	-	HELITRONY3	Helitron	RC	1345	short	1399	high	3886728	chromoarm	152	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	10635647	10636952	AT1TE34400	.	+	HELITRONY1B	Helitron	RC	1305	short	414	high	3874770	chromoarm	208	no-CHH	no-CHH	.	.	.	.	.
Chr1	10646087	10646144	AT1TE34430	.	-	ATHATN3	HAT	DNA	57	tiny	70	medium	3865578	chromoarm	249	no-CHH	no-CHH	.	.	.	.	.
Chr1	10646144	10647068	AT1TE34435	.	-	ATREP15	Helitron	RC	924	short	1003	high	3864654	chromoarm	184	no-CHH	no-CHH	.	.	.	.	.
Chr1	10652084	10653331	AT1TE34445	.	-	ATREP11	Helitron	RC	1247	short	841	high	3858391	chromoarm	632	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	10654143	10654665	AT1TE34450	.	-	ATREP11	Helitron	RC	523	short	841	high	3857057	chromoarm	604	.	.	.	.	.	.	.
Chr1	10655833	10655963	AT1TE34455	.	+	ARNOLD1	MuDR	DNA	130	short	39	low	3855759	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	10660289	10660600	AT1TE34465	.	-	ATENSPM1A	En-Spm	DNA	311	short	77	medium	3851122	chromoarm	1765	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	10666052	10666185	AT1TE34475	.	+	HELITRONY3A	Helitron	RC	133	short	49	low	3845537	chromoarm	1482	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	10675533	10675818	AT1TE34500	.	-	ATCOPIA62	Copia	LTR	285	short	16	low	3835904	chromoarm	472	no-CHH	no-CHH	.	.	.	.	.
Chr1	10675818	10675855	AT1TE34505	.	-	ATCOPIA61	Copia	LTR	37	tiny	12	low	3835867	chromoarm	757	no-CHH	no-CHH	.	.	.	.	.
Chr1	10675905	10675981	AT1TE34510	.	-	HELITRONY3	Helitron	RC	76	tiny	1399	high	3835741	chromoarm	844	no-CHH	no-CHH	.	.	.	.	.
Chr1	10675995	10676907	AT1TE34515	.	-	HELITRONY1A	Helitron	RC	912	short	271	high	3834815	chromoarm	934	no-CHH	no-CHH	.	.	.	.	.
Chr1	10676907	10677073	AT1TE34520	.	+	ATREP15	Helitron	RC	166	short	1003	high	3834649	chromoarm	1846	no-CHH	no-CHH	.	.	.	.	.
Chr1	10677073	10677097	AT1TE34525	.	+	ATREP10D	Helitron	RC	24	tiny	1295	high	3834625	chromoarm	2012	no-CHH	no-CHH	.	.	.	.	.
Chr1	10696713	10701584	AT1TE34580	.	+	ATCOPIA73	Copia	LTR	4871	medium	3	low	3810138	chromoarm	6677	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	10701584	10701640	AT1TE34585	.	+	ATCOPIA15	Copia	LTR	56	tiny	14	low	3810082	chromoarm	8553	no-RdDM	no-CHH	.	.	.	.	.
Chr1	10702614	10703021	AT1TE34590	.	-	ATLINE1_6	L1	LINE	407	short	129	medium	3808701	chromoarm	7172	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	10705524	10706526	AT1TE34595	.	-	ATREP3	Helitron	RC	1002	short	1439	high	3805196	chromoarm	3667	no-CHH	no-CHH	.	.	.	.	.
Chr1	10714643	10714869	AT1TE34620	.	-	ATCOPIA94	Copia	LTR	226	short	39	low	3796853	pericentromeric	1022	no-CHH	no-CHH	.	.	.	.	.
Chr1	10723433	10725219	AT1TE34650	.	+	ATLINEIII	L1	LINE	1786	short	196	medium	3786503	pericentromeric	420	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	10747662	10748313	AT1TE34720	.	+	ATREP1	Helitron	RC	651	short	498	high	3763409	pericentromeric	502	no-CHH	no-CHH	.	.	.	.	.
Chr1	10778292	10778582	AT1TE34820	.	+	HELITRONY1A	Helitron	RC	290	short	271	high	3733140	pericentromeric	840	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	10778582	10779157	AT1TE34825	.	+	ATREP15	Helitron	RC	575	short	1003	high	3732565	pericentromeric	265	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	10790655	10791009	AT1TE34860	.	-	VANDAL17	MuDR	DNA	354	short	178	medium	3720713	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	10800966	10801070	AT1TE34890	.	+	LIMPET1	MuDR	DNA	104	short	116	medium	3710652	pericentromeric	222	no-CHH	no-CHH	.	.	.	.	.
Chr1	10802425	10803341	AT1TE34895	.	-	AT9NMU1	MuDR	DNA	916	short	45	low	3708381	pericentromeric	1394	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	10803341	10803366	AT1TE34900	.	-	AT9NMU1	MuDR	DNA	25	tiny	45	low	3708356	pericentromeric	1369	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	10827328	10827972	AT1TE34980	.	-	ATREP1	Helitron	RC	644	short	498	high	3683750	pericentromeric	960	no-CHH	no-CHH	.	.	.	.	.
Chr1	10827972	10828153	AT1TE34985	.	-	ATREP10D	Helitron	RC	181	short	1295	high	3683569	pericentromeric	779	no-CHH	no-CHH	.	.	.	.	.
Chr1	10840016	10840915	AT1TE35020	.	-	HELITRON1	Helitron	RC	899	short	130	medium	3670807	pericentromeric	425	no-CHH	no-CHH	ExpressedAndAnnotated	10840224,10840224	10840712,10840790	+,+	transcript_id-"2f9b2b96-973b-4489-8cc2-3c82a21d4ceb|7",transcript_id-"82266306-6019-40ef-9369-094835ba066b|9"
Chr1	10840915	10840941	AT1TE35025	.	+	ATHATN6	HAT	DNA	26	tiny	43	low	3670781	pericentromeric	399	no-CHH	no-CHH	.	.	.	.	.
Chr1	10851265	10851466	AT1TE35050	.	-	ATTIRTA1	Tc1	DNA	201	short	95	medium	3660256	pericentromeric	748	no-CHH	no-CHH	.	.	.	.	.
Chr1	10852074	10852625	AT1TE35055	.	-	ATREP3	Helitron	RC	551	short	1439	high	3659097	pericentromeric	1557	no-RdDM	no-CHH	.	.	.	.	.
Chr1	10852625	10853287	AT1TE35060	.	-	ATREP2	Helitron	RC	662	short	164	medium	3658435	pericentromeric	2108	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	10866668	10867813	AT1TE35100	.	-	ATREP10D	Helitron	RC	1145	short	1295	high	3643909	pericentromeric	798	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	10867088	10867731	AT1TE35105	.	-	ATREP13	Helitron	RC	643	short	106	medium	3643991	pericentromeric	880	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	10867813	10867838	AT1TE35110	.	-	ATREP19	.	DNA	25	tiny	189	medium	3643884	pericentromeric	773	no-CHH	no-CHH	.	.	.	.	.
Chr1	10875048	10876201	AT1TE35130	.	-	HELITRONY1E	Helitron	RC	1153	short	447	high	3635521	pericentromeric	651	no-CHH	no-CHH	.	.	.	.	.
Chr1	10886712	10887319	AT1TE35160	.	+	VANDAL8	MuDR	DNA	607	short	123	medium	3624403	pericentromeric	652	no-CHH	no-CHH	.	.	.	.	.
Chr1	10894474	10895281	AT1TE35180	.	-	ATREP10D	Helitron	RC	807	short	1295	high	3616441	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	10911514	10911685	AT1TE35230	.	-	ATREP1	Helitron	RC	171	short	498	high	3600037	pericentromeric	2123	no-CHH	no-CHH	.	.	.	.	.
Chr1	10911685	10912196	AT1TE35235	.	+	HELITRONY3	Helitron	RC	511	short	1399	high	3599526	pericentromeric	2294	no-CHH	no-CHH	.	.	.	.	.
Chr1	10912196	10912240	AT1TE35240	.	-	ATREP11	Helitron	RC	44	tiny	841	high	3599482	pericentromeric	2805	no-CHH	no-CHH	.	.	.	.	.
Chr1	10913483	10913793	AT1TE35245	.	-	ATLINE1_3A	L1	LINE	310	short	160	medium	3597929	pericentromeric	4092	no-RdDM	no-CHH	.	.	.	.	.
Chr1	10914998	10915973	AT1TE35250	.	+	SIMPLEHAT1	HAT	DNA	975	short	56	medium	3595749	pericentromeric	2347	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	10915975	10916170	AT1TE35255	.	+	ATCOPIA15	Copia	LTR	195	short	14	low	3595552	pericentromeric	2150	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	10916591	10917541	AT1TE35260	.	+	ATREP15	Helitron	RC	950	short	1003	high	3594181	pericentromeric	779	no-CHH	no-CHH	.	.	.	.	.
Chr1	10920811	10920864	AT1TE35270	.	-	HELITRON4	Helitron	RC	54	tiny	199	medium	3590858	pericentromeric	369	.	.	.	.	.	.	.
Chr1	10920881	10921401	AT1TE35275	.	-	HELITRONY1B	Helitron	RC	520	short	414	high	3590321	pericentromeric	440	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr1	10922412	10923823	AT1TE35280	.	-	SIMPLEGUY1	Harbinger	DNA	1411	short	116	medium	3587899	pericentromeric	95	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	10924683	10924715	AT1TE35285	.	-	RP1_AT	.	DNA	32	tiny	87	medium	3587007	pericentromeric	0	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	10924715	10924942	AT1TE35290	.	-	RP1_AT	.	DNA	227	short	87	medium	3586780	pericentromeric	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	10929279	10929424	AT1TE35300	.	+	ATHPOGON1	Pogo	DNA	145	short	174	medium	3582298	pericentromeric	2718	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	10929424	10931699	AT1TE35305	.	-	VANDAL8	MuDR	DNA	2275	medium	123	medium	3580023	pericentromeric	1013	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	10930937,10930937,10930971,10930987,10930361	10927070,10929504,10930090,10930162,10931049	-,-,-,-,+	transcript_id-"3acc50a8-2800-4b5e-a07f-ffdf8c976ade|6",transcript_id-"813f1c1d-d56b-4b73-ba2c-6a37ff7e8e8a|20",transcript_id-"371b753a-f222-4c3d-95cc-b6fb89218f97|11",transcript_id-"801c55af-f9e3-4d69-974b-93e8ea12af73|13",transcript_id-"5d7501f9-6b12-47a0-b04c-2a0f47772ce8|10"
Chr1	10931699	10931893	AT1TE35310	.	+	BRODYAGA1A	MuDR	DNA	194	short	586	high	3579829	pericentromeric	819	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	10931893	10931943	AT1TE35315	.	+	ATREP3	Helitron	RC	50	tiny	1439	high	3579779	pericentromeric	769	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	10932103	10932148	AT1TE35320	.	-	TNAT1A	.	DNA	45	tiny	162	medium	3579574	pericentromeric	564	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	10932148	10932697	AT1TE35325	.	-	TNAT1A	.	DNA	549	short	162	medium	3579025	pericentromeric	15	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	10949475	10950410	AT1TE35380	.	-	ATREP3	Helitron	RC	935	short	1439	high	3561312	pericentromeric	650	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr1	10955828	10956342	AT1TE35390	.	+	ATREP11	Helitron	RC	514	short	841	high	3555380	pericentromeric	4763	no-CHH	no-CHH	.	.	.	.	.
Chr1	10956551	10957346	AT1TE35395	.	-	BRODYAGA2	MuDR	DNA	795	short	525	high	3554376	pericentromeric	3759	no-CHH	no-CHH	.	.	.	.	.
Chr1	10959979	10960874	AT1TE35400	.	+	ATREP3	Helitron	RC	895	short	1439	high	3550848	pericentromeric	231	no-CHH	no-CHH	.	.	.	.	.
Chr1	10966587	10966875	AT1TE35410	.	-	BRODYAGA1A	MuDR	DNA	288	short	586	high	3544847	pericentromeric	3588	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	10966906	10968878	AT1TE35415	.	+	SADHU	.	Unassigned	1972	short	16	low	3542844	pericentromeric	3907	no-CHH	no-CHH	ExpressedAndAnnotated	10967863,10967020,10967020	10966940,10967903,10968889	-,+,+	transcript_id-"e80bfca0-68c2-4faa-9b9c-e876da6d4d02|6",transcript_id-"82f20bc9-86fd-4900-aa1c-57c0dd8e5841|5",transcript_id-"782776cf-969d-40d8-a172-57533b6b17a9|4"
Chr1	10969136	10970374	AT1TE35420	.	+	HELITRONY3	Helitron	RC	1238	short	1399	high	3541348	pericentromeric	4206	no-CHH	no-CHH	.	.	.	.	.
Chr1	10972423	10973698	AT1TE35425	.	-	ATREP4	Helitron	RC	1275	short	832	high	3538024	pericentromeric	882	no-CHH	no-CHH	.	.	.	.	.
Chr1	10973698	10974368	AT1TE35430	.	-	HELITRONY1E	Helitron	RC	670	short	447	high	3537354	pericentromeric	212	no-CHH	no-CHH	.	.	.	.	.
Chr1	10974368	10974391	AT1TE35435	.	-	ATREP15	Helitron	RC	23	tiny	1003	high	3537331	pericentromeric	189	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	10974391	10974426	AT1TE35440	.	-	ATREP11	Helitron	RC	35	tiny	841	high	3537296	pericentromeric	154	no-CHH	RDR6-RdDM	.	.	.	.	.
Chr1	10978568	10978647	AT1TE35450	.	-	RathE2_cons	.	RathE2_cons	79	tiny	74	medium	3533075	pericentromeric	1208	no-CHH	no-CHH	.	.	.	.	.
Chr1	10982119	10982866	AT1TE35460	.	+	ATGP1	Gypsy	LTR	747	short	144	medium	3528856	pericentromeric	1692	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	10982870	10983613	AT1TE35465	.	-	ATGP1	Gypsy	LTR	743	short	144	medium	3528109	pericentromeric	1502	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	11003252	11003306	AT1TE35520	.	-	ATREP10C	Helitron	RC	54	tiny	123	medium	3508416	pericentromeric	451	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr1	11005488	11005735	AT1TE35525	.	-	ATREP4	Helitron	RC	247	short	832	high	3505987	pericentromeric	44	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	11005735	11006300	AT1TE35530	.	+	ATTIR16T3A	.	DNA	565	short	106	medium	3505422	pericentromeric	291	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	11006301	11006531	AT1TE35535	.	+	HELITRONY3	Helitron	RC	230	short	1399	high	3505191	pericentromeric	857	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	11006531	11006659	AT1TE35540	.	-	RathE3_cons	.	RathE3_cons	128	short	104	medium	3505063	pericentromeric	1087	PolIV-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	11006655	11006536	-	transcript_id-"fa9bf23c-2473-4db3-900f-a7cc0a4b9478|3"
Chr1	11015977	11016005	AT1TE35570	.	+	HELITRONY3	Helitron	RC	28	tiny	1399	high	3495717	pericentromeric	64	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	11016005	11016462	AT1TE35575	.	+	ATTIR16T3A	.	DNA	457	short	106	medium	3495260	pericentromeric	92	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	11019011	11019392	AT1TE35580	.	-	ATREP3	Helitron	RC	381	short	1439	high	3492330	pericentromeric	3098	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	11019392	11019471	AT1TE35585	.	-	ATREP10D	Helitron	RC	79	tiny	1295	high	3492251	pericentromeric	3479	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	11019473	11020246	AT1TE35590	.	-	ATHPOGON1	Pogo	DNA	773	short	174	medium	3491476	pericentromeric	3560	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	11020246	11020315	AT1TE35595	.	+	ATREP10B	Helitron	RC	69	tiny	491	high	3491407	pericentromeric	4333	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	11020315	11020416	AT1TE35600	.	+	ATREP10D	Helitron	RC	101	short	1295	high	3491306	pericentromeric	4402	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	11021030	11021141	AT1TE35605	.	+	HELITRON1	Helitron	RC	111	short	130	medium	3490581	pericentromeric	5117	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	11023418	11023824	AT1TE35610	.	-	ATDNA2T9C	MuDR	DNA	406	short	242	high	3487898	pericentromeric	7505	no-CHH	no-CHH	.	.	.	.	.
Chr1	11027750	11027971	AT1TE35620	.	+	ATHPOGON1	Pogo	DNA	221	short	174	medium	3483751	pericentromeric	8208	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	11027971	11028439	AT1TE35625	.	-	ATREP3	Helitron	RC	468	short	1439	high	3483283	pericentromeric	7740	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	11028439	11029458	AT1TE35630	.	-	ATREP11	Helitron	RC	1019	short	841	high	3482264	pericentromeric	6721	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	11032189	11032309	AT1TE35635	.	+	ATREP12	Helitron	RC	120	short	22	low	3479413	pericentromeric	3870	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	11032988	11033044	AT1TE35640	.	-	ATLINE1_3A	L1	LINE	56	tiny	160	medium	3478678	pericentromeric	3135	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	11034628	11035081	AT1TE35645	.	-	ATREP10B	Helitron	RC	453	short	491	high	3476641	pericentromeric	1098	no-CHH	no-CHH	.	.	.	.	.
Chr1	11044864	11045603	AT1TE35670	.	+	ATREP11	Helitron	RC	739	short	841	high	3466119	pericentromeric	0	PolIV-and-RDR6-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	11048185	11048555	AT1TE35675	.	-	ATLINE1_3A	L1	LINE	370	short	160	medium	3463167	pericentromeric	915	RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr1	11048696	11051466	AT1TE35680	.	-	VANDAL2N1	MuDR	DNA	2770	medium	51	medium	3460256	pericentromeric	663	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	11060777	11061137	AT1TE35710	.	+	BRODYAGA1A	MuDR	DNA	360	short	586	high	3450585	pericentromeric	2074	no-CHH	no-CHH	.	.	.	.	.
Chr1	11064455	11067139	AT1TE35720	.	-	ATLINEIII	L1	LINE	2684	medium	196	medium	3444583	pericentromeric	2653	no-RdDM	no-RdDM	ExpressedAndAnnotated	11065890	11064470	-	transcript_id-"3f4b4e61-4965-4750-a047-14b824b85e5f|3"
Chr1	11067139	11067658	AT1TE35725	.	-	ATREP15	Helitron	RC	519	short	1003	high	3444064	pericentromeric	2134	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	11068629	11068731	AT1TE35730	.	-	BRODYAGA2	MuDR	DNA	102	short	525	high	3442991	pericentromeric	1061	no-CHH	no-CHH	.	.	.	.	.
Chr1	11068731	11069339	AT1TE35735	.	-	ATREP4	Helitron	RC	608	short	832	high	3442383	pericentromeric	453	no-CHH	no-CHH	.	.	.	.	.
Chr1	11072901	11073100	AT1TE35745	.	+	ATREP15	Helitron	RC	199	short	1003	high	3438622	pericentromeric	719	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	11073100	11074071	AT1TE35750	.	+	ATREP3	Helitron	RC	971	short	1439	high	3437651	pericentromeric	918	no-CHH	no-CHH	.	.	.	.	.
Chr1	11074071	11074117	AT1TE35755	.	-	HELITRONY2	Helitron	RC	46	tiny	198	medium	3437605	pericentromeric	1602	no-CHH	no-CHH	.	.	.	.	.
Chr1	11074117	11074373	AT1TE35760	.	+	ATREP10A	Helitron	RC	256	short	279	high	3437349	pericentromeric	1346	no-CHH	no-CHH	.	.	.	.	.
Chr1	11088748	11088816	AT1TE35810	.	+	ATREP10D	Helitron	RC	68	tiny	1295	high	3422906	pericentromeric	387	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	11088816	11088840	AT1TE35815	.	-	HELITRONY1D	Helitron	RC	24	tiny	756	high	3422882	pericentromeric	455	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	11088841	11089308	AT1TE35820	.	-	HELITRONY1D	Helitron	RC	468	short	756	high	3422414	pericentromeric	479	.	.	.	.	.	.	.
Chr1	11089308	11089361	AT1TE35825	.	-	ATREP19	.	DNA	53	tiny	189	medium	3422361	pericentromeric	947	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	11089361	11089469	AT1TE35830	.	-	ATREP15	Helitron	RC	108	short	1003	high	3422253	pericentromeric	1000	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	11090505	11090638	AT1TE35835	.	+	ATLINE1_3A	L1	LINE	133	short	160	medium	3421084	pericentromeric	1193	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	11093757	11093901	AT1TE35845	.	+	ATHPOGON2	Pogo	DNA	144	short	27	low	3417821	pericentromeric	505	no-CHH	no-CHH	.	.	.	.	.
Chr1	11093901	11094007	AT1TE35850	.	+	ATHPOGON3	Pogo	DNA	106	short	118	medium	3417715	pericentromeric	399	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	11096889	11099331	AT1TE35855	.	-	ATLINE2	L1	LINE	2442	medium	138	medium	3412391	pericentromeric	1240	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	11099331	11100277	AT1TE35860	.	-	ATLINEIII	L1	LINE	946	short	196	medium	3411445	pericentromeric	3682	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	11103433	11103586	AT1TE35870	.	+	ATHAT1	HAT	DNA	153	short	105	medium	3408136	pericentromeric	788	no-RdDM	no-RdDM	ExpressedAndAnnotated	11102532	11103600	+	transcript_id-"7cfdca34-a90d-4e16-9378-bae67d9b0946|26"
Chr1	11111657	11112104	AT1TE35900	.	+	ATLINE1_3A	L1	LINE	447	short	160	medium	3399618	pericentromeric	2858	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	11120128	11120890	AT1TE35930	.	-	VANDAL20	MuDR	DNA	762	short	51	medium	3390832	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	11124545	11124578	AT1TE35940	.	+	VANDAL8	MuDR	DNA	33	tiny	123	medium	3387144	pericentromeric	439	no-CHH	no-CHH	.	.	.	.	.
Chr1	11124578	11125040	AT1TE35945	.	-	ATREP5	Helitron	RC	462	short	624	high	3386682	pericentromeric	472	no-CHH	no-CHH	.	.	.	.	.
Chr1	11125040	11125699	AT1TE35950	.	+	HELITRONY3	Helitron	RC	659	short	1399	high	3386023	pericentromeric	934	no-CHH	no-CHH	.	.	.	.	.
Chr1	11125699	11126411	AT1TE35955	.	-	ATHPOGON2	Pogo	DNA	712	short	27	low	3385311	pericentromeric	1593	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	11126411	11126449	AT1TE35960	.	+	ATREP15	Helitron	RC	38	tiny	1003	high	3385273	pericentromeric	2305	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	11126449	11126578	AT1TE35965	.	+	HELITRONY3	Helitron	RC	129	short	1399	high	3385144	pericentromeric	2343	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	11126985	11127156	AT1TE35970	.	-	VANDAL20	MuDR	DNA	171	short	51	medium	3384566	pericentromeric	2154	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	11130528	11130992	AT1TE35980	.	+	TAG2	HAT	DNA	464	short	86	medium	3380730	pericentromeric	289	no-CHH	no-CHH	.	.	.	.	.
Chr1	11132677	11132865	AT1TE35985	.	-	RathE3_cons	.	RathE3_cons	188	short	104	medium	3378857	pericentromeric	655	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	11136820	11137338	AT1TE35995	.	-	ATREP1	Helitron	RC	518	short	498	high	3374384	pericentromeric	2134	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	11148275	11148307	AT1TE36030	.	-	ATCOPIA25	Copia	LTR	33	tiny	9	low	3363415	pericentromeric	596	.	.	LowExpressed	.	.	.	.
Chr1	11148307	11152649	AT1TE36035	.	-	ATCOPIA51	Copia	LTR	4342	medium	14	low	3359073	pericentromeric	629	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	11152589	11150861	-	transcript_id-"feff09f4-e862-431e-a70f-d13169c5918e|6"
Chr1	11152649	11152684	AT1TE36040	.	-	ATCOPIA52	Copia	LTR	35	tiny	7	low	3359038	pericentromeric	4379	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	11152685	11152710	AT1TE36045	.	-	ATCOPIA79	Copia	LTR	26	tiny	7	low	3359012	pericentromeric	4353	.	.	LowExpressed	.	.	.	.
Chr1	11152796	11152909	AT1TE36050	.	-	ATREP3	Helitron	RC	113	short	1439	high	3358813	pericentromeric	4154	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	11152909	11153316	AT1TE36055	.	-	ATREP3	Helitron	RC	407	short	1439	high	3358406	pericentromeric	3747	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	11153316	11156607	AT1TE36060	.	-	HELITRONY1C	Helitron	RC	3291	medium	120	medium	3355115	pericentromeric	456	PolIV-RdDM	no-CHH	ExpressedAndAnnotated	11155712	11155491	-	transcript_id-"fdc2179c-db44-45e3-a62d-6fe3b6e98d0a|3"
Chr1	11156607	11156632	AT1TE36065	.	-	HELITRONY1C	Helitron	RC	25	tiny	120	medium	3355090	pericentromeric	431	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	11167567	11167817	AT1TE36100	.	-	BRODYAGA1A	MuDR	DNA	250	short	586	high	3343905	pericentromeric	67	no-CHH	no-CHH	.	.	.	.	.
Chr1	11170811	11171651	AT1TE36105	.	+	ATIS112A	Harbinger	DNA	840	short	173	medium	3340071	pericentromeric	3311	no-CHH	no-CHH	ExpressedAndAnnotated	11170965,11170983,11170994	11172016,11171852,11171913	+,+,+	transcript_id-"3f58acb3-381c-47c8-9002-e1ac79dbda22|11",transcript_id-"7241c341-3322-48e7-ab9c-a68d2715442b|3",transcript_id-"f7b4e989-1643-44e1-b8f9-4995cf22e107|35"
Chr1	11172036	11172192	AT1TE36110	.	+	ATIS112A	Harbinger	DNA	156	short	173	medium	3339530	pericentromeric	3366	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	11173582	11174201	AT1TE36115	.	-	ATREP10D	Helitron	RC	619	short	1295	high	3337521	pericentromeric	1357	no-CHH	no-CHH	.	.	.	.	.
Chr1	11174212	11175268	AT1TE36120	.	+	ATREP2A	Helitron	RC	1057	short	116	medium	3336454	pericentromeric	290	.	.	.	.	.	.	.
Chr1	11175268	11175496	AT1TE36125	.	+	ATREP3	Helitron	RC	228	short	1439	high	3336226	pericentromeric	62	no-CHH	no-CHH	.	.	.	.	.
Chr1	11178290	11178953	AT1TE36130	.	+	ATCOPIA50	Copia	LTR	663	short	17	low	3332769	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	11181167	11181521	AT1TE36135	.	-	ATMUN1	MuDR	DNA	354	short	107	medium	3330201	pericentromeric	255	no-CHH	no-CHH	.	.	.	.	.
Chr1	11181820	11181959	AT1TE36140	.	+	ATCOPIA27	Copia	LTR	139	short	19	low	3329763	pericentromeric	0	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	11188282	11188413	AT1TE36160	.	+	ATCOPIA28	Copia	LTR	131	short	81	medium	3323309	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	11201316	11201431	AT1TE36200	.	-	BRODYAGA1	MuDR	DNA	115	short	251	high	3310291	pericentromeric	1291	no-CHH	no-CHH	.	.	.	.	.
Chr1	11201431	11202232	AT1TE36205	.	+	ATREP5	Helitron	RC	801	short	624	high	3309490	pericentromeric	1406	no-CHH	no-CHH	.	.	.	.	.
Chr1	11203758	11204260	AT1TE36210	.	+	META1	Copia	LTR	502	short	138	medium	3307462	pericentromeric	3733	no-CHH	no-CHH	.	.	.	.	.
Chr1	11204437	11204636	AT1TE36215	.	-	RathE1_cons	.	RathE1_cons	199	short	213	high	3307086	pericentromeric	4412	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	11205303	11205826	AT1TE36220	.	-	ATREP19	.	DNA	523	short	189	medium	3305896	pericentromeric	5278	no-CHH	no-CHH	.	.	.	.	.
Chr1	11205826	11206597	AT1TE36225	.	+	ATREP3	Helitron	RC	771	short	1439	high	3305125	pericentromeric	5209	no-CHH	no-CHH	.	.	.	.	.
Chr1	11207115	11207299	AT1TE36230	.	-	HELITRONY1D	Helitron	RC	184	short	756	high	3304423	pericentromeric	4507	no-CHH	no-CHH	.	.	.	.	.
Chr1	11207300	11207627	AT1TE36235	.	+	DT1	Mariner	DNA	327	short	123	medium	3304095	pericentromeric	4179	no-CHH	no-CHH	.	.	.	.	.
Chr1	11207627	11207742	AT1TE36240	.	+	ATREP1	Helitron	RC	115	short	498	high	3303980	pericentromeric	4064	no-CHH	no-CHH	.	.	.	.	.
Chr1	11208789	11209066	AT1TE36245	.	-	ATREP11	Helitron	RC	277	short	841	high	3302656	pericentromeric	2740	no-CHH	no-CHH	.	.	.	.	.
Chr1	11212271	11212543	AT1TE36255	.	+	HELITRON2	Helitron	RC	272	short	194	medium	3299179	pericentromeric	357	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	11225125	11225228	AT1TE36290	.	+	TA11	L1	LINE	103	short	157	medium	3286494	pericentromeric	2419	no-CHH	no-CHH	.	.	.	.	.
Chr1	11239004	11239335	AT1TE36340	.	+	ATCOPIA88	Copia	LTR	331	short	8	low	3272387	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	11241566	11241774	AT1TE36345	.	-	BRODYAGA2	MuDR	DNA	208	short	525	high	3269948	pericentromeric	467	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	11241774	11242082	AT1TE36350	.	+	ATDNAI27T9A	MuDR	DNA	308	short	116	medium	3269640	pericentromeric	675	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	11280156	11280216	AT1TE36480	.	-	HELITRONY3	Helitron	RC	60	tiny	1399	high	3231506	pericentromeric	517	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	11280216	11285438	AT1TE36485	.	-	ATREP10D	Helitron	RC	5222	long	1295	high	3226284	pericentromeric	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	11281185	11281210	AT1TE36490	.	-	HELITRONY2	Helitron	RC	25	tiny	198	medium	3230512	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	11282661	11282816	AT1TE36495	.	-	ATREP3	Helitron	RC	155	short	1439	high	3228906	pericentromeric	193	no-CHH	no-CHH	.	.	.	.	.
Chr1	11282816	11282851	AT1TE36500	.	-	HELITRONY3	Helitron	RC	35	tiny	1399	high	3228871	pericentromeric	348	no-CHH	no-CHH	.	.	.	.	.
Chr1	11282851	11284969	AT1TE36505	.	-	ATREP15	Helitron	RC	2118	medium	1003	high	3226753	pericentromeric	383	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	11286624	11287694	AT1TE36510	.	-	HELITRONY3	Helitron	RC	1070	short	1399	high	3224028	pericentromeric	1549	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	11294092	11294808	AT1TE36530	.	-	ATREP15	Helitron	RC	716	short	1003	high	3216914	pericentromeric	395	no-CHH	no-CHH	.	.	.	.	.
Chr1	11294808	11294860	AT1TE36535	.	-	ARNOLDY2	MuDR	DNA	52	tiny	288	high	3216862	pericentromeric	774	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	11295150	11295230	AT1TE36540	.	-	RathE1_cons	.	RathE1_cons	80	tiny	213	high	3216492	pericentromeric	404	no-CHH	no-CHH	.	.	.	.	.
Chr1	11295413	11295628	AT1TE36545	.	+	ATHILA4D_LTR	Gypsy	LTR	215	short	106	medium	3216094	pericentromeric	6	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	11298444	11299452	AT1TE36550	.	+	ATREP7	Helitron	RC	1008	short	164	medium	3212270	pericentromeric	1160	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	11299452	11299527	AT1TE36555	.	+	ATREP8	Helitron	RC	75	tiny	75	medium	3212195	pericentromeric	2168	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	11301591	11301728	AT1TE36560	.	-	ATMUNX1	MuDR	DNA	137	short	155	medium	3209994	pericentromeric	4307	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	11302129	11302245	AT1TE36565	.	-	ATENSPM7	En-Spm	DNA	116	short	74	medium	3209477	pericentromeric	4845	DCL3-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	11302245	11310368	AT1TE36570	.	-	ATENSPM3	En-Spm	DNA	8123	long	98	medium	3201354	pericentromeric	931	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	11302969	11302618	-	transcript_id-"6d30d674-4703-4a5d-a972-d8cbd255ce68|7"
Chr1	11310726	11310971	AT1TE36575	.	+	ENDOVIR1	Copia	LTR	245	short	15	low	3200751	pericentromeric	328	no-CHH	no-CHH	.	.	.	.	.
Chr1	11312019	11312186	AT1TE36580	.	+	ATREP5	Helitron	RC	167	short	624	high	3199536	pericentromeric	307	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	11312186	11312253	AT1TE36585	.	+	HELITRONY1D	Helitron	RC	67	tiny	756	high	3199469	pericentromeric	474	no-CHH	no-CHH	.	.	.	.	.
Chr1	11312253	11313077	AT1TE36590	.	+	HELITRONY1B	Helitron	RC	824	short	414	high	3198645	pericentromeric	298	no-CHH	no-CHH	.	.	.	.	.
Chr1	11313077	11313163	AT1TE36595	.	+	HELITRONY1C	Helitron	RC	86	tiny	120	medium	3198559	pericentromeric	212	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	11313163	11313193	AT1TE36600	.	+	HELITRONY1E	Helitron	RC	30	tiny	447	high	3198529	pericentromeric	182	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	11315040	11316663	AT1TE36605	.	-	TAG2	HAT	DNA	1623	short	86	medium	3195059	pericentromeric	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	11319715	11321176	AT1TE36615	.	+	ATREP15	Helitron	RC	1461	short	1003	high	3190546	pericentromeric	168	no-CHH	no-CHH	.	.	.	.	.
Chr1	11321176	11321335	AT1TE36620	.	+	ATREP11	Helitron	RC	159	short	841	high	3190387	pericentromeric	1356	no-CHH	no-CHH	.	.	.	.	.
Chr1	11324296	11324440	AT1TE36625	.	-	HELITRONY1E	Helitron	RC	144	short	447	high	3187282	pericentromeric	120	no-CHH	no-CHH	.	.	.	.	.
Chr1	11324440	11325667	AT1TE36630	.	+	HELITRONY3	Helitron	RC	1227	short	1399	high	3186055	pericentromeric	264	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	11325951	11326100	AT1TE36635	.	-	ATCOPIA21	Copia	LTR	149	short	14	low	3185622	pericentromeric	373	no-CHH	no-CHH	.	.	.	.	.
Chr1	11334260	11334450	AT1TE36660	.	-	ATREP8	Helitron	RC	190	short	75	medium	3177272	pericentromeric	820	no-CHH	no-CHH	.	.	.	.	.
Chr1	11335193	11335777	AT1TE36665	.	-	BRODYAGA1	MuDR	DNA	584	short	251	high	3175945	pericentromeric	1753	no-CHH	no-CHH	.	.	.	.	.
Chr1	11335777	11335886	AT1TE36670	.	+	BRODYAGA2	MuDR	DNA	109	short	525	high	3175836	pericentromeric	1671	no-CHH	no-CHH	.	.	.	.	.
Chr1	11342814	11342964	AT1TE36690	.	+	ATHPOGO	Pogo	DNA	150	short	25	low	3168758	pericentromeric	925	no-CHH	no-CHH	.	.	.	.	.
Chr1	11342966	11343281	AT1TE36695	.	+	ATHPOGON2	Pogo	DNA	315	short	27	low	3168441	pericentromeric	698	no-CHH	no-CHH	.	.	.	.	.
Chr1	11345186	11345287	AT1TE36700	.	+	TAG1	HAT	DNA	101	short	28	low	3166435	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	11349406	11349640	AT1TE36710	.	-	DT1	Mariner	DNA	234	short	123	medium	3162082	pericentromeric	214	no-CHH	no-CHH	.	.	.	.	.
Chr1	11351512	11352405	AT1TE36715	.	-	ATREP10	Helitron	RC	893	short	63	medium	3159317	pericentromeric	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	11352405	11352552	AT1TE36720	.	-	ATREP10B	Helitron	RC	147	short	491	high	3159170	pericentromeric	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	11352552	11352725	AT1TE36725	.	-	ATREP4	Helitron	RC	173	short	832	high	3158997	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	11368363	11368459	AT1TE36770	.	+	HELITRONY3	Helitron	RC	96	tiny	1399	high	3143263	pericentromeric	0	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	11368459	11369371	AT1TE36775	.	+	ATREP10D	Helitron	RC	912	short	1295	high	3142351	pericentromeric	0	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	11384553	11385295	AT1TE36820	.	+	ATREP3	Helitron	RC	742	short	1439	high	3126427	pericentromeric	5139	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	11387699	11388108	AT1TE36825	.	+	HELITRONY1D	Helitron	RC	409	short	756	high	3123614	pericentromeric	3232	no-CHH	no-CHH	.	.	.	.	.
Chr1	11406186	11406327	AT1TE36880	.	-	HELITRONY1E	Helitron	RC	141	short	447	high	3105395	pericentromeric	425	no-CHH	no-CHH	.	.	.	.	.
Chr1	11406327	11406654	AT1TE36885	.	-	ATREP1	Helitron	RC	327	short	498	high	3105068	pericentromeric	566	no-CHH	no-CHH	.	.	.	.	.
Chr1	11406654	11410513	AT1TE36890	.	-	ATREP5	Helitron	RC	3859	medium	624	high	3101209	pericentromeric	618	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	11410513	11410704	AT1TE36895	.	+	ATREP4	Helitron	RC	191	short	832	high	3101018	pericentromeric	427	no-CHH	no-CHH	.	.	.	.	.
Chr1	11410704	11410726	AT1TE36900	.	-	HELITRONY1B	Helitron	RC	22	tiny	414	high	3100996	pericentromeric	405	no-CHH	no-CHH	.	.	.	.	.
Chr1	11410726	11410813	AT1TE36905	.	+	HELITRONY1A	Helitron	RC	87	tiny	271	high	3100909	pericentromeric	318	no-CHH	no-CHH	.	.	.	.	.
Chr1	11421959	11422070	AT1TE36940	.	-	ARNOLD1	MuDR	DNA	112	short	39	low	3089652	pericentromeric	1261	.	.	.	.	.	.	.
Chr1	11422070	11422450	AT1TE36945	.	-	ATTIRX1C	.	DNA	380	short	39	low	3089272	pericentromeric	881	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	11427624	11427690	AT1TE36955	.	-	HELITRONY3	Helitron	RC	66	tiny	1399	high	3084032	pericentromeric	1096	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr1	11427690	11428401	AT1TE36960	.	-	HELITRONY3	Helitron	RC	711	short	1399	high	3083321	pericentromeric	1162	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	11442206	11442905	AT1TE37010	.	+	ATREP4	Helitron	RC	699	short	832	high	3068817	pericentromeric	7	no-CHH	no-CHH	.	.	.	.	.
Chr1	11451872	11451909	AT1TE37040	.	-	HELITRONY1A	Helitron	RC	37	tiny	271	high	3059813	pericentromeric	0	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	11451909	11451944	AT1TE37045	.	-	ATREP3	Helitron	RC	35	tiny	1439	high	3059778	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	11451944	11453249	AT1TE37050	.	-	ATREP11	Helitron	RC	1305	short	841	high	3058473	pericentromeric	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	11453249	11453448	AT1TE37055	.	-	ATREP10D	Helitron	RC	199	short	1295	high	3058274	pericentromeric	1264	no-CHH	no-CHH	.	.	.	.	.
Chr1	11454383	11454469	AT1TE37060	.	-	ATLANTYS3	Gypsy	LTR	86	tiny	142	medium	3057253	pericentromeric	2398	no-CHH	no-CHH	ExpressedAndAnnotated	11453602	11455163	+	transcript_id-"f783da93-c25e-4c61-a3ab-ad9af0bd5500|3"
Chr1	11454665	11454888	AT1TE37065	.	-	TAT1_ATH	Gypsy	LTR	223	short	87	medium	3056834	pericentromeric	2680	no-CHH	no-CHH	ExpressedAndAnnotated	11453602,11453602,11453602,11453680,11454920,11454920	11455159,11455163,11455239,11455119,11454104,11454206	+,+,+,+,-,-	transcript_id-"5ec0d67a-da6a-48d0-aad4-39f66af4bcc1|19",transcript_id-"f783da93-c25e-4c61-a3ab-ad9af0bd5500|3",transcript_id-"1cd39e22-41b5-4ef7-ae4d-2fa9fd71397e|13",transcript_id-"90b5fd31-30b6-4f55-8713-d93905d58001|6",transcript_id-"ed07b7ea-f4da-4ffe-95f6-1dac9154f2ca|7",transcript_id-"75f192f4-1ed7-422f-8bdd-8c843814e9dc|10"
Chr1	11455749	11456169	AT1TE37070	.	+	ARNOLD4	MuDR	DNA	420	short	23	low	3055553	pericentromeric	2880	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	11457201	11457354	AT1TE37075	.	+	HELITRON1	Helitron	RC	153	short	130	medium	3054368	pericentromeric	1695	no-CHH	no-CHH	.	.	.	.	.
Chr1	11474998	11475090	AT1TE37130	.	+	ATCOPIA26	Copia	LTR	92	tiny	19	low	3036632	pericentromeric	716	no-CHH	no-CHH	.	.	.	.	.
Chr1	11479600	11479728	AT1TE37140	.	+	ATDNA12T3_2	.	DNA	128	short	660	high	3031994	pericentromeric	0	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	11485508	11486636	AT1TE37150	.	-	ATREP3	Helitron	RC	1128	short	1439	high	3025086	pericentromeric	1568	no-CHH	no-CHH	.	.	.	.	.
Chr1	11486636	11486704	AT1TE37155	.	+	BRODYAGA2	MuDR	DNA	68	tiny	525	high	3025018	pericentromeric	1500	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	11489819	11490271	AT1TE37165	.	+	ATREP6	Helitron	RC	452	short	181	medium	3021451	pericentromeric	637	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	11490271	11491439	AT1TE37170	.	+	ATREP8	Helitron	RC	1168	short	75	medium	3020283	pericentromeric	1089	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	11491439	11492840	AT1TE37175	.	+	HELITRONY3	Helitron	RC	1401	short	1399	high	3018882	pericentromeric	2257	no-CHH	no-CHH	.	.	.	.	.
Chr1	11492840	11493647	AT1TE37180	.	-	ATDNA12T3_2	.	DNA	807	short	660	high	3018075	pericentromeric	3658	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	11493660	11493713	AT1TE37185	.	+	HELITRONY1D	Helitron	RC	53	tiny	756	high	3018009	pericentromeric	4478	no-CHH	no-CHH	.	.	.	.	.
Chr1	11496151	11496619	AT1TE37190	.	-	ATREP11	Helitron	RC	468	short	841	high	3015103	pericentromeric	6969	no-CHH	no-CHH	.	.	.	.	.
Chr1	11496619	11497116	AT1TE37195	.	-	ATTIR16T3A	.	DNA	497	short	106	medium	3014606	pericentromeric	7437	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	11504086	11505147	AT1TE37210	.	+	ATLANTYS3	Gypsy	LTR	1061	short	142	medium	3006575	pericentromeric	3137	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	11505147	11507634	AT1TE37215	.	+	ATLANTYS2	Gypsy	LTR	2487	medium	179	medium	3004088	pericentromeric	650	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	11508352	11508500	AT1TE37220	.	-	VANDAL7	MuDR	DNA	148	short	36	low	3003222	pericentromeric	0	no-RdDM	no-CHH	ExpressedAndAnnotated	11509127	11508151	-	transcript_id-"e1270444-d240-4abb-8074-c84a041610d4|4"
Chr1	11513360	11513387	AT1TE37230	.	+	HELITRONY1E	Helitron	RC	27	tiny	447	high	2998335	pericentromeric	293	no-CHH	no-CHH	.	.	.	.	.
Chr1	11513387	11514249	AT1TE37235	.	+	HELITRONY2	Helitron	RC	862	short	198	medium	2997473	pericentromeric	320	no-CHH	no-CHH	.	.	.	.	.
Chr1	11514249	11514351	AT1TE37240	.	+	ATREP10D	Helitron	RC	102	short	1295	high	2997371	pericentromeric	242	no-CHH	no-CHH	.	.	.	.	.
Chr1	11514351	11514437	AT1TE37245	.	+	HELITRONY1E	Helitron	RC	86	tiny	447	high	2997285	pericentromeric	156	no-CHH	no-CHH	.	.	.	.	.
Chr1	11516075	11516131	AT1TE37250	.	-	RathE3_cons	.	RathE3_cons	56	tiny	104	medium	2995591	pericentromeric	480	no-RdDM	no-CHH	.	.	.	.	.
Chr1	11516844	11517045	AT1TE37255	.	+	BRODYAGA2	MuDR	DNA	201	short	525	high	2994677	pericentromeric	1249	no-CHH	no-CHH	.	.	.	.	.
Chr1	11517045	11517911	AT1TE37260	.	-	ATREP7	Helitron	RC	866	short	164	medium	2993811	pericentromeric	1450	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	11517916	11521322	AT1TE37265	.	-	ATLANTYS2	Gypsy	LTR	3406	medium	179	medium	2990400	pericentromeric	2321	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	11518146	11517993	-	transcript_id-"842830fc-a376-496b-b802-32049602274e|3"
Chr1	11521573	11521625	AT1TE37270	.	-	ATREP7	Helitron	RC	52	tiny	164	medium	2990097	pericentromeric	5978	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	11521625	11523416	AT1TE37275	.	-	ATREP11	Helitron	RC	1791	short	841	high	2988306	pericentromeric	5199	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	11523416	11523517	AT1TE37280	.	+	ATENSPM3	En-Spm	DNA	101	short	98	medium	2988205	pericentromeric	5098	no-CHH	no-CHH	.	.	.	.	.
Chr1	11523517	11523550	AT1TE37285	.	+	HELITRONY3	Helitron	RC	33	tiny	1399	high	2988172	pericentromeric	5065	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	11523550	11523780	AT1TE37290	.	+	ATENSPM5	En-Spm	DNA	230	short	111	medium	2987942	pericentromeric	4835	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	11524200	11525379	AT1TE37295	.	-	ATREP10D	Helitron	RC	1179	short	1295	high	2986343	pericentromeric	3236	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	11525390	11525686	AT1TE37300	.	+	HELITRONY3	Helitron	RC	296	short	1399	high	2986036	pericentromeric	2929	no-CHH	no-CHH	.	.	.	.	.
Chr1	11525686	11527099	AT1TE37305	.	-	ATREP11	Helitron	RC	1413	short	841	high	2984623	pericentromeric	1516	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	11527100	11527603	AT1TE37310	.	-	ATREP11	Helitron	RC	504	short	841	high	2984119	pericentromeric	1012	.	.	.	.	.	.	.
Chr1	11527603	11527635	AT1TE37315	.	+	ATREP15	Helitron	RC	32	tiny	1003	high	2984087	pericentromeric	980	no-CHH	no-CHH	.	.	.	.	.
Chr1	11536699	11536807	AT1TE37340	.	+	ATHATN3	HAT	DNA	108	short	70	medium	2974915	pericentromeric	410	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	11537285	11537388	AT1TE37345	.	+	ATCOPIA47	Copia	LTR	103	short	4	low	2974334	pericentromeric	183	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	11549114	11549607	AT1TE37380	.	+	HELITRON2	Helitron	RC	493	short	194	medium	2962115	pericentromeric	1161	no-CHH	no-CHH	.	.	.	.	.
Chr1	11550098	11550281	AT1TE37385	.	-	ATREP10B	Helitron	RC	183	short	491	high	2961441	pericentromeric	2145	no-CHH	no-CHH	.	.	.	.	.
Chr1	11550281	11551141	AT1TE37390	.	+	HELITRONY2	Helitron	RC	860	short	198	medium	2960581	pericentromeric	1784	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	11551141	11551618	AT1TE37395	.	+	HELITRONY3	Helitron	RC	477	short	1399	high	2960104	pericentromeric	1307	no-CHH	no-CHH	.	.	.	.	.
Chr1	11578082	11578165	AT1TE37480	.	+	ATHATN1	HAT	DNA	83	tiny	69	medium	2933557	pericentromeric	306	no-CHH	no-CHH	.	.	.	.	.
Chr1	11578165	11578290	AT1TE37485	.	+	ATLANTYS3	Gypsy	LTR	125	short	142	medium	2933432	pericentromeric	389	no-CHH	no-CHH	.	.	.	.	.
Chr1	11580500	11581114	AT1TE37490	.	+	ATLANTYS3	Gypsy	LTR	614	short	142	medium	2930608	pericentromeric	2724	no-CHH	no-CHH	.	.	.	.	.
Chr1	11581194	11581565	AT1TE37495	.	+	ATENSPM1	En-Spm	DNA	371	short	30	low	2930157	pericentromeric	3418	no-CHH	no-CHH	.	.	.	.	.
Chr1	11590319	11590571	AT1TE37520	.	-	VANDAL8	MuDR	DNA	252	short	123	medium	2921151	pericentromeric	668	no-CHH	no-CHH	.	.	.	.	.
Chr1	11591213	11591269	AT1TE37525	.	-	ATREP4	Helitron	RC	56	tiny	832	high	2920453	pericentromeric	1562	no-CHH	no-CHH	.	.	.	.	.
Chr1	11591269	11591960	AT1TE37530	.	-	BRODYAGA1	MuDR	DNA	691	short	251	high	2919762	pericentromeric	1098	no-CHH	no-CHH	.	.	.	.	.
Chr1	11596771	11596887	AT1TE37540	.	-	TSCL	.	LINE?	116	short	81	medium	2914835	pericentromeric	1040	no-CHH	no-CHH	.	.	.	.	.
Chr1	11597332	11597586	AT1TE37545	.	-	ATTIRTA1	Tc1	DNA	254	short	95	medium	2914136	pericentromeric	1601	no-CHH	no-CHH	.	.	.	.	.
Chr1	11597586	11597769	AT1TE37550	.	+	ATREP15	Helitron	RC	183	short	1003	high	2913953	pericentromeric	1855	no-CHH	no-CHH	.	.	.	.	.
Chr1	11611212	11611817	AT1TE37590	.	+	ATREP15	Helitron	RC	605	short	1003	high	2899905	pericentromeric	923	no-CHH	no-CHH	.	.	.	.	.
Chr1	11617476	11617533	AT1TE37600	.	-	ATREP15	Helitron	RC	57	tiny	1003	high	2894189	pericentromeric	1582	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	11617533	11617702	AT1TE37605	.	+	ATREP15	Helitron	RC	169	short	1003	high	2894020	pericentromeric	1639	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	11617702	11619060	AT1TE37610	.	+	HELITRONY3	Helitron	RC	1358	short	1399	high	2892662	pericentromeric	1808	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	11619060	11619090	AT1TE37615	.	-	ATREP3	Helitron	RC	30	tiny	1439	high	2892632	pericentromeric	3166	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	11619090	11619156	AT1TE37620	.	+	HELITRONY1E	Helitron	RC	66	tiny	447	high	2892566	pericentromeric	3196	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	11623857	11624130	AT1TE37630	.	+	ATHILA7	Gypsy	LTR	273	short	134	medium	2887592	pericentromeric	1751	no-CHH	no-CHH	.	.	.	.	.
Chr1	11626913	11627418	AT1TE37635	.	-	ATREP10D	Helitron	RC	505	short	1295	high	2884304	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	11631745	11632526	AT1TE37645	.	+	ATREP4	Helitron	RC	781	short	832	high	2879196	pericentromeric	1390	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	11634520	11634652	AT1TE37650	.	+	ATCOPIA87	Copia	LTR	132	short	19	low	2877070	pericentromeric	4165	no-CHH	no-RdDM	.	.	.	.	.
Chr1	11634652	11636076	AT1TE37655	.	-	ATREP10D	Helitron	RC	1424	short	1295	high	2875646	pericentromeric	3766	no-CHH	no-CHH	.	.	.	.	.
Chr1	11636076	11637042	AT1TE37660	.	+	ATREP10D	Helitron	RC	966	short	1295	high	2874680	pericentromeric	2800	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	11641971	11642197	AT1TE37670	.	-	ATTIR16T3A	.	DNA	226	short	106	medium	2869525	pericentromeric	187	no-CHH	no-CHH	.	.	.	.	.
Chr1	11642197	11642380	AT1TE37675	.	-	HELITRONY3	Helitron	RC	183	short	1399	high	2869342	pericentromeric	212	no-CHH	no-CHH	.	.	.	.	.
Chr1	11643079	11643309	AT1TE37680	.	+	ATHATN3	HAT	DNA	230	short	70	medium	2868413	pericentromeric	0	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	11644393	11644558	AT1TE37685	.	-	RathE1_cons	.	RathE1_cons	165	short	213	high	2867164	pericentromeric	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	11645647	11646176	AT1TE37690	.	-	HELITRONY1B	Helitron	RC	529	short	414	high	2865546	pericentromeric	43	no-CHH	no-CHH	.	.	.	.	.
Chr1	11647282	11647308	AT1TE37695	.	-	HELITRONY1E	Helitron	RC	26	tiny	447	high	2864414	pericentromeric	466	no-CHH	no-CHH	.	.	.	.	.
Chr1	11647308	11647425	AT1TE37700	.	-	HELITRONY1B	Helitron	RC	117	short	414	high	2864297	pericentromeric	492	no-CHH	no-CHH	.	.	.	.	.
Chr1	11647425	11648912	AT1TE37705	.	+	ATREP7	Helitron	RC	1487	short	164	medium	2862810	pericentromeric	609	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	11648913	11649897	AT1TE37710	.	+	ATREP10C	Helitron	RC	985	short	123	medium	2861825	pericentromeric	324	.	.	.	.	.	.	.
Chr1	11649912	11650225	AT1TE37715	.	+	HELITRONY1E	Helitron	RC	313	short	447	high	2861497	pericentromeric	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	11650318	11650578	AT1TE37720	.	-	ATGP1	Gypsy	LTR	260	short	144	medium	2861144	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	11656155	11656213	AT1TE37730	.	+	HELITRONY1D	Helitron	RC	58	tiny	756	high	2855509	pericentromeric	82	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	11656213	11656847	AT1TE37735	.	+	ATHPOGON1	Pogo	DNA	634	short	174	medium	2854875	pericentromeric	140	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	11656847	11656946	AT1TE37740	.	+	ATHPOGON1	Pogo	DNA	99	tiny	174	medium	2854776	pericentromeric	318	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	11656946	11657360	AT1TE37745	.	+	ATREP3	Helitron	RC	414	short	1439	high	2854362	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	11660592	11660990	AT1TE37755	.	-	ATREP1	Helitron	RC	398	short	498	high	2850732	pericentromeric	358	no-CHH	no-CHH	.	.	.	.	.
Chr1	11660990	11661122	AT1TE37760	.	+	ATDNA2T9C	MuDR	DNA	132	short	242	high	2850600	pericentromeric	692	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	11666452	11666871	AT1TE37770	.	-	BRODYAGA1A	MuDR	DNA	420	short	586	high	2844851	pericentromeric	365	.	.	.	.	.	.	.
Chr1	11668807	11668858	AT1TE37775	.	+	ATREP10D	Helitron	RC	51	tiny	1295	high	2842864	pericentromeric	238	no-CHH	no-CHH	.	.	.	.	.
Chr1	11668858	11669189	AT1TE37780	.	-	ATREP15	Helitron	RC	331	short	1003	high	2842533	pericentromeric	289	no-CHH	no-CHH	.	.	.	.	.
Chr1	11669189	11669319	AT1TE37785	.	-	HELITRONY1D	Helitron	RC	130	short	756	high	2842403	pericentromeric	620	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	11669319	11670243	AT1TE37790	.	-	ATREP1	Helitron	RC	924	short	498	high	2841479	pericentromeric	750	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	11670243	11670641	AT1TE37795	.	-	ATREP10B	Helitron	RC	398	short	491	high	2841081	pericentromeric	1674	no-CHH	no-CHH	.	.	.	.	.
Chr1	11687060	11687582	AT1TE37840	.	-	HELITRONY3	Helitron	RC	522	short	1399	high	2824140	pericentromeric	1810	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	11688198	11688218	AT1TE37845	.	+	ATLINEIII	L1	LINE	20	tiny	196	medium	2823504	pericentromeric	1174	no-CHH	no-CHH	.	.	.	.	.
Chr1	11688218	11688569	AT1TE37850	.	+	ATLINEIII	L1	LINE	351	short	196	medium	2823153	pericentromeric	823	no-CHH	no-CHH	.	.	.	.	.
Chr1	11688903	11688967	AT1TE37855	.	+	ATLINE1_3A	L1	LINE	64	tiny	160	medium	2822755	pericentromeric	425	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	11692362	11692500	AT1TE37865	.	-	ATGP3	Gypsy	LTR	139	short	60	medium	2819222	pericentromeric	1488	.	.	.	.	.	.	.
Chr1	11692896	11693034	AT1TE37870	.	-	ATGP3	Gypsy	LTR	139	short	60	medium	2818688	pericentromeric	1363	.	.	.	.	.	.	.
Chr1	11693330	11693686	AT1TE37875	.	-	ATGP3	Gypsy	LTR	356	short	60	medium	2818036	pericentromeric	711	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	11698913	11699257	AT1TE37885	.	-	ATREP3	Helitron	RC	344	short	1439	high	2812465	pericentromeric	1017	no-CHH	no-CHH	.	.	.	.	.
Chr1	11699257	11701926	AT1TE37890	.	+	ATREP3	Helitron	RC	2669	medium	1439	high	2809796	pericentromeric	68	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	11701926	11701959	AT1TE37895	.	+	ATREP3	Helitron	RC	33	tiny	1439	high	2809763	pericentromeric	35	no-CHH	no-CHH	.	.	.	.	.
Chr1	11701959	11702020	AT1TE37900	.	+	HELITRONY1B	Helitron	RC	61	tiny	414	high	2809702	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	11703840	11704294	AT1TE37905	.	-	VANDAL3	MuDR	DNA	454	short	177	medium	2807428	pericentromeric	637	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	11704457	11704896	AT1TE37910	.	-	VANDAL3	MuDR	DNA	439	short	177	medium	2806826	pericentromeric	35	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	11704896	11705026	AT1TE37915	.	-	VANDAL3	MuDR	DNA	130	short	177	medium	2806696	pericentromeric	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	11706322	11706445	AT1TE37920	.	+	HELITRONY1A	Helitron	RC	123	short	271	high	2805277	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	11706445	11708850	AT1TE37925	.	+	ATREP5	Helitron	RC	2405	medium	624	high	2802872	pericentromeric	120	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	11708850	11709051	AT1TE37930	.	+	ATREP5	Helitron	RC	201	short	624	high	2802671	pericentromeric	2525	no-CHH	no-CHH	.	.	.	.	.
Chr1	11710254	11711644	AT1TE37935	.	-	ATREP11	Helitron	RC	1390	short	841	high	2800078	pericentromeric	560	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	11711644	11711972	AT1TE37940	.	+	HELITRONY1E	Helitron	RC	328	short	447	high	2799750	pericentromeric	232	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	11720252	11720280	AT1TE37970	.	+	BRODYAGA2	MuDR	DNA	28	tiny	525	high	2791442	pericentromeric	445	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	11720280	11722435	AT1TE37975	.	+	ATREP4	Helitron	RC	2155	medium	832	high	2789287	pericentromeric	473	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	11722435	11722543	AT1TE37980	.	-	HELITRONY3	Helitron	RC	108	short	1399	high	2789179	pericentromeric	2628	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	11722543	11723269	AT1TE37985	.	-	ATREP10D	Helitron	RC	726	short	1295	high	2788453	pericentromeric	2736	no-CHH	no-CHH	.	.	.	.	.
Chr1	11725071	11725515	AT1TE37990	.	+	ATREP3	Helitron	RC	444	short	1439	high	2786207	pericentromeric	5264	no-CHH	no-CHH	.	.	.	.	.
Chr1	11731722	11732352	AT1TE38010	.	+	ATREP15	Helitron	RC	630	short	1003	high	2779370	pericentromeric	6506	no-CHH	no-CHH	.	.	.	.	.
Chr1	11732354	11732947	AT1TE38015	.	+	ATREP2	Helitron	RC	593	short	164	medium	2778775	pericentromeric	5911	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	11732947	11733122	AT1TE38020	.	-	ATREP10B	Helitron	RC	175	short	491	high	2778600	pericentromeric	5736	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr1	11733122	11733160	AT1TE38025	.	+	HELITRONY2	Helitron	RC	38	tiny	198	medium	2778562	pericentromeric	5698	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	11734829	11735185	AT1TE38030	.	+	ATREP10D	Helitron	RC	356	short	1295	high	2776537	pericentromeric	3673	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	11735185	11737670	AT1TE38035	.	-	ATREP3	Helitron	RC	2485	medium	1439	high	2774052	pericentromeric	1188	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	11737670	11737988	AT1TE38040	.	+	ATREP3	Helitron	RC	318	short	1439	high	2773734	pericentromeric	870	no-RdDM	no-CHH	.	.	.	.	.
Chr1	11737988	11738058	AT1TE38045	.	+	HELITRONY1D	Helitron	RC	70	tiny	756	high	2773664	pericentromeric	800	no-CHH	no-CHH	.	.	.	.	.
Chr1	11752260	11755077	AT1TE38090	.	+	VANDAL2N1	MuDR	DNA	2817	medium	51	medium	2756645	pericentromeric	266	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	11762796	11763108	AT1TE38120	.	-	ATREP3	Helitron	RC	312	short	1439	high	2748614	pericentromeric	410	no-CHH	no-CHH	.	.	.	.	.
Chr1	11764129	11765379	AT1TE38125	.	+	ATREP4	Helitron	RC	1250	short	832	high	2746343	pericentromeric	1743	no-CHH	no-CHH	.	.	.	.	.
Chr1	11766187	11767344	AT1TE38130	.	+	ATREP10D	Helitron	RC	1157	short	1295	high	2744378	pericentromeric	908	no-CHH	no-CHH	.	.	.	.	.
Chr1	11767344	11767449	AT1TE38135	.	+	ATHPOGON3	Pogo	DNA	105	short	118	medium	2744273	pericentromeric	803	no-CHH	no-CHH	.	.	.	.	.
Chr1	11775365	11775430	AT1TE38160	.	-	HELITRONY3	Helitron	RC	65	tiny	1399	high	2736292	pericentromeric	333	no-CHH	no-CHH	.	.	.	.	.
Chr1	11775430	11776018	AT1TE38165	.	+	ATREP4	Helitron	RC	588	short	832	high	2735704	pericentromeric	398	no-CHH	no-CHH	.	.	.	.	.
Chr1	11782132	11782287	AT1TE38180	.	+	ATREP11	Helitron	RC	155	short	841	high	2729435	pericentromeric	1820	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	11782287	11782359	AT1TE38185	.	-	HELITRONY1E	Helitron	RC	72	tiny	447	high	2729363	pericentromeric	1748	no-CHH	no-CHH	.	.	.	.	.
Chr1	11782359	11782552	AT1TE38190	.	-	ATREP14	Helitron	RC	193	short	47	low	2729170	pericentromeric	1555	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	11782552	11783489	AT1TE38195	.	-	ATREP15	Helitron	RC	937	short	1003	high	2728233	pericentromeric	618	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	11783489	11783570	AT1TE38200	.	-	ATREP10D	Helitron	RC	81	tiny	1295	high	2728152	pericentromeric	537	no-RdDM	no-CHH	.	.	.	.	.
Chr1	11789449	11794079	AT1TE38210	.	+	ATCOPIA31	Copia	LTR	4630	medium	8	low	2717643	pericentromeric	272	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	11803050	11803470	AT1TE38240	.	-	ATREP2A	Helitron	RC	420	short	116	medium	2708252	pericentromeric	2137	no-CHH	no-CHH	.	.	.	.	.
Chr1	11803470	11804092	AT1TE38245	.	-	ATREP2	Helitron	RC	622	short	164	medium	2707630	pericentromeric	2557	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	11804092	11804334	AT1TE38250	.	-	HELITRONY3	Helitron	RC	242	short	1399	high	2707388	pericentromeric	3179	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	11805517	11805614	AT1TE38255	.	-	ATREP3	Helitron	RC	97	tiny	1439	high	2706108	pericentromeric	4604	no-CHH	no-RdDM	.	.	.	.	.
Chr1	11805614	11806799	AT1TE38260	.	-	ATREP3	Helitron	RC	1185	short	1439	high	2704923	pericentromeric	3757	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	11817657	11818739	AT1TE38300	.	-	SIMPLEHAT1	HAT	DNA	1082	short	56	medium	2692983	pericentromeric	1681	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	11819679	11820061	AT1TE38305	.	+	BRODYAGA1	MuDR	DNA	382	short	251	high	2691661	pericentromeric	1017	no-CHH	no-CHH	.	.	.	.	.
Chr1	11823543	11825123	AT1TE38315	.	+	HELITRONY3	Helitron	RC	1580	short	1399	high	2686599	pericentromeric	1862	no-CHH	no-CHH	.	.	.	.	.
Chr1	11826417	11826496	AT1TE38320	.	-	ATREP10D	Helitron	RC	79	tiny	1295	high	2685226	pericentromeric	1091	no-CHH	no-CHH	.	.	.	.	.
Chr1	11826496	11827062	AT1TE38325	.	-	HELITRONY1D	Helitron	RC	566	short	756	high	2684660	pericentromeric	525	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	11827062	11827305	AT1TE38330	.	+	ATREP4	Helitron	RC	243	short	832	high	2684417	pericentromeric	282	no-CHH	no-CHH	.	.	.	.	.
Chr1	11830008	11830415	AT1TE38335	.	+	HELITRONY1D	Helitron	RC	407	short	756	high	2681307	pericentromeric	564	no-CHH	no-CHH	.	.	.	.	.
Chr1	11831779	11832816	AT1TE38340	.	+	HELITRONY1D	Helitron	RC	1037	short	756	high	2678906	pericentromeric	296	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	11834650	11834922	AT1TE38345	.	+	VANDAL5	MuDR	DNA	273	short	85	medium	2676800	pericentromeric	0	.	.	LowExpressed	.	.	.	.
Chr1	11834922	11836068	AT1TE38350	.	+	VANDAL5A	MuDR	DNA	1146	short	56	medium	2675654	pericentromeric	0	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	11836106	11836305	AT1TE38355	.	+	VANDAL4	MuDR	DNA	200	short	102	medium	2675417	pericentromeric	0	.	.	.	.	.	.	.
Chr1	11836740	11836893	AT1TE38360	.	+	VANDAL5	MuDR	DNA	154	short	85	medium	2674829	pericentromeric	108	.	.	ExpressedAndAnnotated	11836349	11836952	+	transcript_id-"5d661738-1735-4fb2-afd7-21cd444af222|5"
Chr1	11860050	11860152	AT1TE38440	.	+	ATHATN1	HAT	DNA	102	short	69	medium	2651570	pericentromeric	333	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	11861676	11861876	AT1TE38445	.	+	ATCOPIA95	Copia	LTR	200	short	72	medium	2649846	pericentromeric	785	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	11863014	11863362	AT1TE38450	.	+	ATHAT10	HAT	DNA	348	short	35	low	2648360	pericentromeric	1980	no-CHH	no-CHH	.	.	.	.	.
Chr1	11863831	11863981	AT1TE38455	.	+	HELITRONY3	Helitron	RC	150	short	1399	high	2647741	pericentromeric	1361	no-CHH	no-CHH	.	.	.	.	.
Chr1	11863984	11864831	AT1TE38460	.	+	BRODYAGA2	MuDR	DNA	847	short	525	high	2646891	pericentromeric	511	no-CHH	no-CHH	.	.	.	.	.
Chr1	11864831	11865337	AT1TE38465	.	-	HELITRONY1A	Helitron	RC	506	short	271	high	2646385	pericentromeric	5	no-CHH	no-CHH	.	.	.	.	.
Chr1	11873809	11874498	AT1TE38490	.	+	ATREP1	Helitron	RC	689	short	498	high	2637224	pericentromeric	529	no-CHH	no-CHH	.	.	.	.	.
Chr1	11877571	11877671	AT1TE38500	.	-	ATREP15	Helitron	RC	100	short	1003	high	2634051	pericentromeric	383	no-CHH	no-CHH	.	.	.	.	.
Chr1	11877671	11879507	AT1TE38505	.	-	ATREP15	Helitron	RC	1836	short	1003	high	2632215	pericentromeric	483	no-CHH	no-CHH	.	.	.	.	.
Chr1	11887019	11887094	AT1TE38520	.	-	ARNOLDY1	MuDR	DNA	75	tiny	237	high	2624628	pericentromeric	1176	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	11887094	11887151	AT1TE38525	.	+	ARNOLD2	MuDR	DNA	57	tiny	68	medium	2624571	pericentromeric	1251	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	11887151	11901703	AT1TE38530	.	+	ARNOLD2	MuDR	DNA	14552	long	68	medium	2610019	pericentromeric	925	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	11895609,11896586,11901547,11901547	11892909,11896417,11896417,11900760	-,-,-,-	transcript_id-"a4af4924-7e1f-4add-a361-5600c3002ab1|6",transcript_id-"a87fa8c6-0469-411f-a496-27a3ecd06680|7",transcript_id-"030cfbcf-91e4-40ae-841d-a7f1ec8a8f9f|3",transcript_id-"bef6c286-f693-44fd-a005-8b3a0cd2422e|19"
Chr1	11910222	11910244	AT1TE38560	.	+	RathE3_cons	.	RathE3_cons	22	tiny	104	medium	2601478	pericentromeric	1419	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	11910245	11910685	AT1TE38565	.	-	ATREP10D	Helitron	RC	441	short	1295	high	2601037	pericentromeric	1059	.	.	.	.	.	.	.
Chr1	11910685	11911721	AT1TE38570	.	+	ATREP15	Helitron	RC	1036	short	1003	high	2600001	pericentromeric	23	no-CHH	no-CHH	.	.	.	.	.
Chr1	11914829	11919899	AT1TE38580	.	-	ATLINEIII	L1	LINE	5070	long	196	medium	2591823	pericentromeric	94	no-CHH	no-CHH	.	.	.	.	.
Chr1	11927028	11927176	AT1TE38600	.	-	ATCOPIA56	Copia	LTR	148	short	16	low	2584546	pericentromeric	120	no-CHH	no-CHH	.	.	.	.	.
Chr1	11935689	11936470	AT1TE38630	.	-	ATREP5	Helitron	RC	781	short	624	high	2575252	pericentromeric	1163	no-CHH	no-CHH	.	.	.	.	.
Chr1	11957934	11958234	AT1TE38700	.	+	ATLINE1_2	L1	LINE	300	short	41	low	2553488	pericentromeric	795	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	11958316	11959087	AT1TE38705	.	+	TNAT2A	.	DNA	771	short	38	low	2552635	pericentromeric	199	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	11960835	11961029	AT1TE38710	.	-	RathE3_cons	.	RathE3_cons	194	short	104	medium	2550693	pericentromeric	244	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	11961998	11962592	AT1TE38715	.	+	HELITRONY1A	Helitron	RC	594	short	271	high	2549130	pericentromeric	153	no-CHH	no-CHH	.	.	.	.	.
Chr1	11972703	11973440	AT1TE38740	.	-	ATREP15	Helitron	RC	737	short	1003	high	2538282	pericentromeric	167	no-CHH	no-CHH	.	.	.	.	.
Chr1	11974465	11974503	AT1TE38745	.	-	HELITRON4	Helitron	RC	38	tiny	199	medium	2537219	pericentromeric	1014	no-CHH	no-CHH	.	.	.	.	.
Chr1	11974503	11974524	AT1TE38750	.	+	ATREP10D	Helitron	RC	21	tiny	1295	high	2537198	pericentromeric	993	no-CHH	no-CHH	.	.	.	.	.
Chr1	11974524	11975469	AT1TE38755	.	+	HELITRON2	Helitron	RC	945	short	194	medium	2536253	pericentromeric	48	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	11975469	11975496	AT1TE38760	.	+	ATREP3	Helitron	RC	27	tiny	1439	high	2536226	pericentromeric	21	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	11979510	11979620	AT1TE38770	.	+	HELITRONY3	Helitron	RC	110	short	1399	high	2532102	pericentromeric	1017	no-CHH	no-CHH	.	.	.	.	.
Chr1	11979620	11982674	AT1TE38775	.	+	ATREP4	Helitron	RC	3054	medium	832	high	2529048	pericentromeric	214	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	11982674	11983039	AT1TE38780	.	+	HELITRONY1B	Helitron	RC	365	short	414	high	2528683	pericentromeric	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	11983040	11983078	AT1TE38785	.	+	ARNOLDY2	MuDR	DNA	39	tiny	288	high	2528644	pericentromeric	0	.	.	.	.	.	.	.
Chr1	11983079	11983129	AT1TE38790	.	+	ARNOLDY2	MuDR	DNA	51	tiny	288	high	2528593	pericentromeric	0	.	.	.	.	.	.	.
Chr1	11983129	11984131	AT1TE38795	.	+	ARNOLDY2	MuDR	DNA	1002	short	288	high	2527591	pericentromeric	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	11984131	11984303	AT1TE38800	.	+	ARNOLDY1	MuDR	DNA	172	short	237	high	2527419	pericentromeric	0	no-RdDM	no-CHH	.	.	.	.	.
Chr1	11984305	11984358	AT1TE38805	.	+	ATREP10D	Helitron	RC	53	tiny	1295	high	2527364	pericentromeric	0	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	11987747	11987778	AT1TE38815	.	+	ATREP13	Helitron	RC	31	tiny	106	medium	2523944	pericentromeric	0	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr1	11987778	11988416	AT1TE38820	.	+	ATREP13	Helitron	RC	638	short	106	medium	2523306	pericentromeric	0	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	11990538	11990568	AT1TE38825	.	+	ATREP5	Helitron	RC	30	tiny	624	high	2521154	pericentromeric	211	no-CHH	no-CHH	.	.	.	.	.
Chr1	11990568	11990878	AT1TE38830	.	-	ATREP15	Helitron	RC	310	short	1003	high	2520844	pericentromeric	241	no-CHH	no-CHH	.	.	.	.	.
Chr1	11990878	11992997	AT1TE38835	.	+	ATREP15	Helitron	RC	2119	medium	1003	high	2518725	pericentromeric	460	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	11992997	11993192	AT1TE38840	.	+	ATREP3	Helitron	RC	195	short	1439	high	2518530	pericentromeric	265	no-CHH	no-CHH	.	.	.	.	.
Chr1	11993456	11993578	AT1TE38845	.	-	ATENSPM1A	En-Spm	DNA	122	short	77	medium	2518144	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	11993829	11994187	AT1TE38850	.	-	ATREP5	Helitron	RC	358	short	624	high	2517535	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	11997986	11998681	AT1TE38860	.	-	ATREP10D	Helitron	RC	695	short	1295	high	2513041	pericentromeric	0	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	11998681	11998872	AT1TE38865	.	+	ARNOLDY2	MuDR	DNA	191	short	288	high	2512850	pericentromeric	0	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr1	12001558	12001782	AT1TE38870	.	+	ATCOPIA34	Copia	LTR	224	short	16	low	2509940	pericentromeric	250	no-CHH	no-CHH	.	.	.	.	.
Chr1	12009494	12009841	AT1TE38900	.	+	ATMUNX1	MuDR	DNA	347	short	155	medium	2501881	pericentromeric	876	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	12010328	12010496	AT1TE38905	.	+	ATHATN4	HAT	DNA	169	short	56	medium	2501226	pericentromeric	489	.	.	.	.	.	.	.
Chr1	12012335	12012506	AT1TE38910	.	-	ARNOLDY2	MuDR	DNA	171	short	288	high	2499216	pericentromeric	112	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	12012508	12013095	AT1TE38915	.	-	ATTIR16T3A	.	DNA	587	short	106	medium	2498627	pericentromeric	285	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12013095	12013397	AT1TE38920	.	+	HELITRONY3	Helitron	RC	302	short	1399	high	2498325	pericentromeric	872	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	12013702	12014340	AT1TE38925	.	+	ATHAT7	HAT	DNA	638	short	20	low	2497382	pericentromeric	1479	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	12014740	12014878	AT1TE38930	.	+	ATHATN4	HAT	DNA	138	short	56	medium	2496844	pericentromeric	2517	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	12015672	12016037	AT1TE38935	.	+	HELITRONY1D	Helitron	RC	365	short	756	high	2495685	pericentromeric	3449	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	12016037	12020227	AT1TE38940	.	-	ATENSPM1A	En-Spm	DNA	4190	medium	77	medium	2491495	pericentromeric	3132	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	12019245,12019245,12019244,12019226	12016403,12016404,12016405,12024708	-,-,-,+	transcript_id-"a9d531d0-34cd-4b19-8bdc-586c8a76d034|13",transcript_id-"3888a9b0-28a3-4cde-8fff-cc07cea15c7a|13",transcript_id-"5353821b-e4be-4e23-a70d-7e2dc25c2e5f|6",transcript_id-"cef05562-a225-4fd6-a373-6172c3cbdca9|3"
Chr1	12020227	12021118	AT1TE38945	.	-	ATREP10D	Helitron	RC	891	short	1295	high	2490604	pericentromeric	2241	no-CHH	no-RdDM	.	.	.	.	.
Chr1	12021254	12021839	AT1TE38950	.	-	ATREP3	Helitron	RC	585	short	1439	high	2489883	pericentromeric	1520	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12022702	12022870	AT1TE38955	.	+	ATHATN4	HAT	DNA	169	short	56	medium	2488852	pericentromeric	489	.	.	.	.	.	.	.
Chr1	12030524	12030891	AT1TE38980	.	+	ATLINE2	L1	LINE	367	short	138	medium	2480831	pericentromeric	127	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	12031580	12033193	AT1TE38985	.	+	ATHILA5	Gypsy	LTR	1613	short	131	medium	2478529	pericentromeric	1183	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	12033193	12033256	AT1TE38990	.	+	ATHILA5	Gypsy	LTR	63	tiny	131	medium	2478466	pericentromeric	2796	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	12033256	12033378	AT1TE38995	.	+	ATHILA5	Gypsy	LTR	122	short	131	medium	2478344	pericentromeric	2859	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	12038434	12039278	AT1TE39005	.	-	HELITRONY3	Helitron	RC	844	short	1399	high	2472444	pericentromeric	5593	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12039278	12040654	AT1TE39010	.	+	ATREP3	Helitron	RC	1376	short	1439	high	2471068	pericentromeric	4217	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	12040654	12040676	AT1TE39015	.	-	ATREP10D	Helitron	RC	22	tiny	1295	high	2471046	pericentromeric	4195	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	12040676	12040723	AT1TE39020	.	+	ATREP3	Helitron	RC	47	tiny	1439	high	2470999	pericentromeric	4148	no-CHH	no-CHH	.	.	.	.	.
Chr1	12040915	12041279	AT1TE39025	.	-	ATDNA12T3_2	.	DNA	364	short	660	high	2470443	pericentromeric	3592	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	12041782	12042411	AT1TE39030	.	+	ATLINE2	L1	LINE	629	short	138	medium	2469311	pericentromeric	2460	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	12042411	12042588	AT1TE39035	.	-	ATREP5	Helitron	RC	177	short	624	high	2469134	pericentromeric	2283	no-CHH	no-CHH	.	.	.	.	.
Chr1	12043640	12044591	AT1TE39040	.	+	ATLINEIII	L1	LINE	951	short	196	medium	2467131	pericentromeric	280	no-CHH	no-CHH	.	.	.	.	.
Chr1	12062609	12062735	AT1TE39100	.	+	ATREP10B	Helitron	RC	126	short	491	high	2448987	pericentromeric	2060	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	12062735	12064146	AT1TE39105	.	-	ATREP3	Helitron	RC	1411	short	1439	high	2447576	pericentromeric	649	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12076729	12076856	AT1TE39140	.	-	ATGP9B	Gypsy	LTR	127	short	27	low	2434866	pericentromeric	740	no-CHH	no-CHH	.	.	.	.	.
Chr1	12079832	12080605	AT1TE39145	.	-	ATREP5	Helitron	RC	773	short	624	high	2431117	pericentromeric	403	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12080698	12080826	AT1TE39150	.	-	ATLINE2	L1	LINE	129	short	138	medium	2430896	pericentromeric	182	.	.	.	.	.	.	.
Chr1	12084096	12084194	AT1TE39160	.	+	ATREP8	Helitron	RC	98	tiny	75	medium	2427528	pericentromeric	634	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12084208	12084743	AT1TE39165	.	+	ATREP8	Helitron	RC	535	short	75	medium	2426979	pericentromeric	224	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	12096670	12096692	AT1TE39200	.	+	ATREP5	Helitron	RC	22	tiny	624	high	2415030	pericentromeric	881	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	12096692	12096749	AT1TE39205	.	-	ATREP11	Helitron	RC	57	tiny	841	high	2414973	pericentromeric	903	no-CHH	no-CHH	.	.	.	.	.
Chr1	12096749	12097187	AT1TE39210	.	+	HELITRONY1D	Helitron	RC	438	short	756	high	2414535	pericentromeric	960	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	12097187	12097457	AT1TE39215	.	+	HELITRONY1B	Helitron	RC	270	short	414	high	2414265	pericentromeric	1398	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	12097457	12097550	AT1TE39220	.	+	ATREP2	Helitron	RC	93	tiny	164	medium	2414172	pericentromeric	1668	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	12097550	12098275	AT1TE39225	.	+	ATREP2	Helitron	RC	725	short	164	medium	2413447	pericentromeric	1462	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12098275	12098837	AT1TE39230	.	-	HELITRONY1D	Helitron	RC	562	short	756	high	2412885	pericentromeric	900	no-CHH	no-CHH	.	.	.	.	.
Chr1	12099152	12099373	AT1TE39235	.	-	ATCOPIA61	Copia	LTR	221	short	12	low	2412349	pericentromeric	364	no-CHH	no-CHH	.	.	.	.	.
Chr1	12130445	12130783	AT1TE39330	.	+	HELITRONY1B	Helitron	RC	338	short	414	high	2380939	pericentromeric	118	no-CHH	no-CHH	.	.	.	.	.
Chr1	12131009	12131736	AT1TE39335	.	+	ATREP1	Helitron	RC	728	short	498	high	2379986	pericentromeric	681	.	.	.	.	.	.	.
Chr1	12133220	12133331	AT1TE39340	.	-	RathE1_cons	.	RathE1_cons	111	short	213	high	2378391	pericentromeric	2893	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	12136447	12136604	AT1TE39350	.	-	ATREP9	Helitron	RC	157	short	201	high	2375118	pericentromeric	6120	no-CHH	no-CHH	.	.	.	.	.
Chr1	12136604	12136633	AT1TE39355	.	-	ATREP14	Helitron	RC	29	tiny	47	low	2375089	pericentromeric	6277	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	12136633	12137681	AT1TE39360	.	-	ATREP14	Helitron	RC	1048	short	47	low	2374041	pericentromeric	6306	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12137682	12137978	AT1TE39365	.	-	ATREP11	Helitron	RC	296	short	841	high	2373744	pericentromeric	6653	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	12138861	12139089	AT1TE39370	.	-	BRODYAGA2	MuDR	DNA	228	short	525	high	2372633	pericentromeric	5542	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	12139299	12139652	AT1TE39375	.	+	VANDAL12	MuDR	DNA	353	short	37	low	2372070	pericentromeric	4979	no-RdDM	no-CHH	ExpressedAndAnnotated	12139153	12139918	+	transcript_id-"c5181226-6725-4a9a-8f1c-19e891c3ae9d|91"
Chr1	12140694	12141659	AT1TE39380	.	-	ATMU10	MuDR	DNA	965	short	87	medium	2370063	pericentromeric	2972	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	12142873	12140001	-	transcript_id-"9908b4e6-4df7-4a73-aa3e-a41c62cd9b87|4"
Chr1	12142254	12142353	AT1TE39385	.	+	ATENSPM6	En-Spm	DNA	100	short	151	medium	2369369	pericentromeric	2278	.	.	LowExpressed	.	.	.	.
Chr1	12142353	12142692	AT1TE39390	.	+	ATENSPM5	En-Spm	DNA	339	short	111	medium	2369030	pericentromeric	1939	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	12142923,12142873	12142460,12142475	-,-	transcript_id-"22a1d634-c5c5-46b3-a404-90f80d888e4b|3",transcript_id-"e1390807-1428-40ec-801e-e5932c3b5479|26"
Chr1	12142987	12143017	AT1TE39395	.	+	BRODYAGA2	MuDR	DNA	31	tiny	525	high	2368705	pericentromeric	1614	.	.	.	.	.	.	.
Chr1	12143017	12143178	AT1TE39400	.	-	BRODYAGA2	MuDR	DNA	161	short	525	high	2368544	pericentromeric	1453	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12143178	12144154	AT1TE39405	.	+	ATREP10D	Helitron	RC	976	short	1295	high	2367568	pericentromeric	477	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12144154	12144358	AT1TE39410	.	+	ATREP10B	Helitron	RC	204	short	491	high	2367364	pericentromeric	273	no-CHH	no-CHH	.	.	.	.	.
Chr1	12155266	12155294	AT1TE39450	.	+	ATHILA0_I	Gypsy	LTR	28	tiny	138	medium	2356428	pericentromeric	586	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	12155294	12155316	AT1TE39455	.	+	ATHILA0_I	Gypsy	LTR	22	tiny	138	medium	2356406	pericentromeric	614	no-CHH	no-CHH	.	.	.	.	.
Chr1	12155316	12155791	AT1TE39460	.	+	ATHILA7	Gypsy	LTR	475	short	134	medium	2355931	pericentromeric	636	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	12166280	12166620	AT1TE39490	.	-	ATLINE1_3A	L1	LINE	340	short	160	medium	2345102	pericentromeric	1580	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12166867	12167019	AT1TE39495	.	+	ATGP8	Gypsy	LTR	152	short	92	medium	2344703	pericentromeric	2072	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12167308	12167380	AT1TE39500	.	-	ATENSPM7	En-Spm	DNA	72	tiny	74	medium	2344342	pericentromeric	1711	no-CHH	no-CHH	.	.	.	.	.
Chr1	12172484	12172516	AT1TE39510	.	-	ATENSPM10	En-Spm	DNA	32	tiny	81	medium	2339206	pericentromeric	606	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	12172516	12177219	AT1TE39515	.	-	ATENSPM10	En-Spm	DNA	4703	medium	81	medium	2334503	pericentromeric	568	no-RdDM	no-RdDM	ExpressedAndAnnotated	12173134,12174671,12176897	12172914,12172916,12176319	-,-,-	transcript_id-"ceaca7a1-9c8c-4eb0-b3e8-ab1d9fe2a538|7",transcript_id-"05e70b83-c938-452d-a1a9-ab244d6d7436|3",transcript_id-"80067220-26d5-401c-b28f-0928b8ef3f55|6"
Chr1	12183386	12184077	AT1TE39530	.	-	ATREP2A	Helitron	RC	691	short	116	medium	2327645	pericentromeric	1174	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12183405	12184060	AT1TE39535	.	-	ATREP2A	Helitron	RC	655	short	116	medium	2327662	pericentromeric	1193	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12184077	12184141	AT1TE39540	.	+	VANDAL8	MuDR	DNA	64	tiny	123	medium	2327581	pericentromeric	1865	no-RdDM	no-CHH	.	.	.	.	.
Chr1	12185143	12185281	AT1TE39545	.	-	ATREP5	Helitron	RC	139	short	624	high	2326441	pericentromeric	1736	.	.	.	.	.	.	.
Chr1	12185281	12186309	AT1TE39550	.	+	HELITRONY1D	Helitron	RC	1028	short	756	high	2325413	pericentromeric	708	no-CHH	no-RdDM	.	.	.	.	.
Chr1	12186309	12186336	AT1TE39555	.	-	HELITRONY1D	Helitron	RC	27	tiny	756	high	2325386	pericentromeric	681	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	12186336	12186783	AT1TE39560	.	+	ATREP6	Helitron	RC	447	short	181	medium	2324939	pericentromeric	234	no-CHH	RDR6-RdDM	.	.	.	.	.
Chr1	12188014	12188704	AT1TE39565	.	+	ATREP1	Helitron	RC	690	short	498	high	2323018	pericentromeric	205	no-CHH	no-CHH	.	.	.	.	.
Chr1	12196682	12196963	AT1TE39590	.	-	VANDAL3	MuDR	DNA	281	short	177	medium	2314759	pericentromeric	712	no-CHH	no-CHH	.	.	.	.	.
Chr1	12207726	12207838	AT1TE39630	.	+	VANDAL1	MuDR	DNA	112	short	80	medium	2303884	pericentromeric	0	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	12215646	12216917	AT1TE39660	.	-	ATREP10D	Helitron	RC	1271	short	1295	high	2294805	pericentromeric	2075	no-CHH	no-CHH	.	.	.	.	.
Chr1	12228715	12228742	AT1TE39700	.	-	HELITRONY1A	Helitron	RC	27	tiny	271	high	2282980	pericentromeric	255	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	12228742	12228768	AT1TE39705	.	-	HELITRONY1C	Helitron	RC	26	tiny	120	medium	2282954	pericentromeric	282	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	12228768	12230816	AT1TE39710	.	-	HELITRONY1C	Helitron	RC	2048	medium	120	medium	2280906	pericentromeric	308	PolIV-RdDM	no-CHH	ExpressedAndAnnotated	12230536	12230007	-	transcript_id-"f1bc3a93-6713-4f6c-bda1-f71906c4a4f2|15"
Chr1	12229477	12229573	AT1TE39715	.	-	HELITRONY1D	Helitron	RC	96	tiny	756	high	2282149	pericentromeric	1017	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	12230816	12231359	AT1TE39720	.	-	HELITRON1	Helitron	RC	543	short	130	medium	2280363	pericentromeric	2356	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	12231359	12231480	AT1TE39725	.	+	ATREP4	Helitron	RC	121	short	832	high	2280242	pericentromeric	2288	no-CHH	no-CHH	.	.	.	.	.
Chr1	12240435	12240469	AT1TE39750	.	+	ATREP2	Helitron	RC	34	tiny	164	medium	2271253	pericentromeric	1656	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12240469	12241280	AT1TE39755	.	+	ATREP2	Helitron	RC	811	short	164	medium	2270442	pericentromeric	845	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	12241280	12241384	AT1TE39760	.	-	ATREP4	Helitron	RC	104	short	832	high	2270338	pericentromeric	741	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	12241384	12241494	AT1TE39765	.	-	BRODYAGA1	MuDR	DNA	110	short	251	high	2270228	pericentromeric	631	no-CHH	no-CHH	.	.	.	.	.
Chr1	12241494	12241571	AT1TE39770	.	+	ATREP1	Helitron	RC	77	tiny	498	high	2270151	pericentromeric	554	no-CHH	no-CHH	.	.	.	.	.
Chr1	12242735	12243209	AT1TE39775	.	-	ATMU6N1	MuDR	DNA	474	short	39	low	2268513	pericentromeric	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	12246435	12247641	AT1TE39785	.	+	ATREP10D	Helitron	RC	1206	short	1295	high	2264081	pericentromeric	401	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	12249075	12249414	AT1TE39790	.	+	ATDNA12T3_2	.	DNA	339	short	660	high	2262308	pericentromeric	3041	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12250885	12251906	AT1TE39795	.	+	HELITRONY1D	Helitron	RC	1021	short	756	high	2259816	pericentromeric	4851	no-CHH	no-CHH	.	.	.	.	.
Chr1	12252001	12252350	AT1TE39800	.	-	ATMU9	MuDR	DNA	349	short	16	low	2259372	pericentromeric	4639	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	12252751	12253031	AT1TE39805	.	-	ATCOPIA36	Copia	LTR	280	short	14	low	2258691	pericentromeric	3958	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	12253056	12253455	AT1TE39810	.	-	ATDNA12T3_2	.	DNA	399	short	660	high	2258267	pericentromeric	3534	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	12255465	12255521	AT1TE39815	.	-	TNAT1A	.	DNA	56	tiny	162	medium	2256201	pericentromeric	1468	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	12257209	12257975	AT1TE39820	.	+	ATREP11	Helitron	RC	766	short	841	high	2253747	pericentromeric	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	12263038	12263876	AT1TE39830	.	+	HARBINGER	Harbinger	DNA	838	short	90	medium	2247846	pericentromeric	582	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	12264053	12264315	AT1TE39835	.	+	SIMPLEGUY1	Harbinger	DNA	262	short	116	medium	2247407	pericentromeric	768	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	12264395	12264674	AT1TE39840	.	+	ATREP11	Helitron	RC	279	short	841	high	2247048	pericentromeric	409	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	12264674	12264732	AT1TE39845	.	-	RathE1_cons	.	RathE1_cons	58	tiny	213	high	2246990	pericentromeric	351	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12270219	12270780	AT1TE39855	.	-	ATHATN3A	HAT	DNA	561	short	20	low	2240942	pericentromeric	529	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	12271451	12271743	AT1TE39860	.	-	ATREP15	Helitron	RC	292	short	1003	high	2239979	pericentromeric	1761	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	12271743	12272453	AT1TE39865	.	-	HELITRONY1E	Helitron	RC	710	short	447	high	2239269	pericentromeric	2053	no-CHH	no-CHH	.	.	.	.	.
Chr1	12272453	12272977	AT1TE39870	.	-	ATREP11	Helitron	RC	524	short	841	high	2238745	pericentromeric	2763	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr1	12272977	12273246	AT1TE39875	.	-	ATREP3	Helitron	RC	269	short	1439	high	2238476	pericentromeric	3287	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr1	12273259	12276388	AT1TE39880	.	-	ATCOPIA35	Copia	LTR	3129	medium	22	low	2235334	pericentromeric	2049	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	12276388	12276648	AT1TE39885	.	-	ATCOPIA54	Copia	LTR	260	short	18	low	2235074	pericentromeric	1789	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	12277517	12277701	AT1TE39890	.	-	ATDNA12T3_2	.	DNA	184	short	660	high	2234021	pericentromeric	736	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12281844	12282217	AT1TE39900	.	+	ATCOPIA12	Copia	LTR	373	short	15	low	2229505	pericentromeric	438	no-CHH	no-CHH	.	.	.	.	.
Chr1	12282246	12282799	AT1TE39905	.	-	ATREP10D	Helitron	RC	553	short	1295	high	2228923	pericentromeric	840	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12286563	12287597	AT1TE39915	.	+	VANDAL18NA	MuDR	DNA	1034	short	24	low	2224125	pericentromeric	315	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	12287598	12287713	AT1TE39920	.	+	VANDAL18NA	MuDR	DNA	116	short	24	low	2224009	pericentromeric	199	.	.	LowExpressed	.	.	.	.
Chr1	12288417	12288446	AT1TE39925	.	-	HELITRONY3	Helitron	RC	29	tiny	1399	high	2223276	pericentromeric	207	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	12288446	12290102	AT1TE39930	.	-	ATREP10A	Helitron	RC	1656	short	279	high	2221620	pericentromeric	236	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	12290102	12290231	AT1TE39935	.	-	HELITRONY1B	Helitron	RC	129	short	414	high	2221491	pericentromeric	1892	no-CHH	no-CHH	.	.	.	.	.
Chr1	12290231	12291121	AT1TE39940	.	-	ATREP15	Helitron	RC	890	short	1003	high	2220601	pericentromeric	2021	no-CHH	no-CHH	.	.	.	.	.
Chr1	12291132	12291225	AT1TE39945	.	+	ATREP15	Helitron	RC	93	tiny	1003	high	2220497	pericentromeric	2922	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	12291257	12292501	AT1TE39950	.	+	Unassigned	.	Unassigned	1244	short	.	low	2219221	pericentromeric	1892	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	12295450	12295625	AT1TE39955	.	-	ATENSPM2	En-Spm	DNA	175	short	114	medium	2216097	pericentromeric	145	no-CHH	no-CHH	.	.	.	.	.
Chr1	12296789	12297054	AT1TE39960	.	-	ATHILA7	Gypsy	LTR	265	short	134	medium	2214668	pericentromeric	1484	no-CHH	no-CHH	.	.	.	.	.
Chr1	12297562	12297725	AT1TE39965	.	-	ATDNA12T3_2	.	DNA	163	short	660	high	2213997	pericentromeric	2257	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	12297725	12298009	AT1TE39970	.	-	ATDNA12T3_2	.	DNA	284	short	660	high	2213713	pericentromeric	2420	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12298455	12299158	AT1TE39975	.	-	HELITRONY1E	Helitron	RC	703	short	447	high	2212564	pericentromeric	2166	DCL3-RdDM	no-RdDM	.	.	.	.	.
Chr1	12299158	12299179	AT1TE39980	.	-	HELITRONY1B	Helitron	RC	21	tiny	414	high	2212543	pericentromeric	2145	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	12299181	12299344	AT1TE39985	.	-	ATDNA12T3_2	.	DNA	163	short	660	high	2212378	pericentromeric	1980	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	12299344	12299623	AT1TE39990	.	-	ATDNA12T3_2	.	DNA	279	short	660	high	2212099	pericentromeric	1701	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	12300021	12300214	AT1TE39995	.	+	HELITRONY1C	Helitron	RC	193	short	120	medium	2211508	pericentromeric	1110	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	12300214	12300968	AT1TE40000	.	-	HELITRONY1B	Helitron	RC	754	short	414	high	2210754	pericentromeric	356	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	12300968	12301182	AT1TE40005	.	-	HELITRONY1A	Helitron	RC	214	short	271	high	2210540	pericentromeric	142	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	12302962	12303213	AT1TE40010	.	+	RP1_AT	.	DNA	251	short	87	medium	2208509	pericentromeric	495	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12305630	12305759	AT1TE40015	.	-	ATREP10D	Helitron	RC	129	short	1295	high	2205963	pericentromeric	719	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr1	12305759	12307523	AT1TE40020	.	-	HELITRONY3	Helitron	RC	1764	short	1399	high	2204199	pericentromeric	760	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	12307523	12307633	AT1TE40025	.	+	ATREP10D	Helitron	RC	110	short	1295	high	2204089	pericentromeric	650	no-CHH	no-CHH	.	.	.	.	.
Chr1	12309951	12310543	AT1TE40030	.	-	BRODYAGA1	MuDR	DNA	592	short	251	high	2201179	pericentromeric	265	no-CHH	no-CHH	.	.	.	.	.
Chr1	12319199	12319604	AT1TE40060	.	+	ATHATN5	HAT	DNA	405	short	42	low	2192118	pericentromeric	300	no-CHH	no-CHH	.	.	.	.	.
Chr1	12324785	12324806	AT1TE40070	.	-	ATHPOGON1	Pogo	DNA	21	tiny	174	medium	2186916	pericentromeric	0	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	12324806	12325818	AT1TE40075	.	+	ATREP15	Helitron	RC	1012	short	1003	high	2185904	pericentromeric	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	12325818	12326024	AT1TE40080	.	-	HELITRONY1E	Helitron	RC	206	short	447	high	2185698	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	12327516	12327584	AT1TE40085	.	+	RathE1_cons	.	RathE1_cons	68	tiny	213	high	2184138	pericentromeric	432	no-CHH	no-CHH	.	.	.	.	.
Chr1	12327780	12330357	AT1TE40090	.	-	ATREP3	Helitron	RC	2578	medium	1439	high	2181365	pericentromeric	566	.	.	.	.	.	.	.
Chr1	12330357	12330614	AT1TE40095	.	+	HELITRONY1D	Helitron	RC	257	short	756	high	2181108	pericentromeric	309	no-CHH	no-CHH	.	.	.	.	.
Chr1	12330614	12330653	AT1TE40100	.	+	ATREP3	Helitron	RC	39	tiny	1439	high	2181069	pericentromeric	270	no-CHH	no-CHH	.	.	.	.	.
Chr1	12330653	12330798	AT1TE40105	.	+	ATREP5	Helitron	RC	145	short	624	high	2180924	pericentromeric	125	no-CHH	no-CHH	.	.	.	.	.
Chr1	12330798	12330899	AT1TE40110	.	+	ATREP5	Helitron	RC	101	short	624	high	2180823	pericentromeric	24	no-CHH	no-CHH	.	.	.	.	.
Chr1	12333624	12333648	AT1TE40115	.	-	HELITRON4	Helitron	RC	24	tiny	199	medium	2178074	pericentromeric	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	12333648	12338510	AT1TE40120	.	+	HELITRONY3	Helitron	RC	4862	medium	1399	high	2173212	pericentromeric	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12338510	12338573	AT1TE40125	.	+	HELITRONY3	Helitron	RC	63	tiny	1399	high	2173149	pericentromeric	0	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	12338574	12338648	AT1TE40130	.	-	ATHPOGON1	Pogo	DNA	74	tiny	174	medium	2173074	pericentromeric	0	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	12339186	12339263	AT1TE40135	.	-	HELITRONY3	Helitron	RC	77	tiny	1399	high	2172459	pericentromeric	4	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	12339263	12339285	AT1TE40140	.	-	HELITRONY1D	Helitron	RC	22	tiny	756	high	2172437	pericentromeric	81	no-CHH	no-CHH	.	.	.	.	.
Chr1	12339285	12340088	AT1TE40145	.	+	HELITRONY1E	Helitron	RC	803	short	447	high	2171634	pericentromeric	103	no-CHH	no-CHH	.	.	.	.	.
Chr1	12340088	12340201	AT1TE40150	.	-	ATREP19	.	DNA	113	short	189	medium	2171521	pericentromeric	906	no-CHH	no-CHH	.	.	.	.	.
Chr1	12341017	12341310	AT1TE40155	.	+	ATMUNX1	MuDR	DNA	293	short	155	medium	2170412	pericentromeric	1835	no-CHH	no-CHH	.	.	.	.	.
Chr1	12343258	12343403	AT1TE40160	.	+	ATCOPIA95	Copia	LTR	146	short	72	medium	2168319	pericentromeric	3151	.	.	.	.	.	.	.
Chr1	12344980	12345962	AT1TE40165	.	+	ATREP10D	Helitron	RC	982	short	1295	high	2165760	pericentromeric	592	no-CHH	no-CHH	.	.	.	.	.
Chr1	12345962	12346447	AT1TE40170	.	-	ATREP15	Helitron	RC	485	short	1003	high	2165275	pericentromeric	107	no-CHH	no-CHH	.	.	.	.	.
Chr1	12346862	12347001	AT1TE40175	.	-	ATMU7	MuDR	DNA	140	short	32	low	2164721	pericentromeric	0	.	.	LowExpressed	.	.	.	.
Chr1	12347001	12347086	AT1TE40180	.	-	ATMU7	MuDR	DNA	85	tiny	32	low	2164636	pericentromeric	0	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	12362546	12363127	AT1TE40230	.	-	ATREP13	Helitron	RC	581	short	106	medium	2148595	pericentromeric	1708	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	12363713	12363796	AT1TE40235	.	-	ATREP10D	Helitron	RC	83	tiny	1295	high	2147926	pericentromeric	2875	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	12363796	12366841	AT1TE40240	.	-	ATREP3	Helitron	RC	3045	medium	1439	high	2144881	pericentromeric	517	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	12366841	12366869	AT1TE40245	.	+	HELITRONY3	Helitron	RC	28	tiny	1399	high	2144853	pericentromeric	489	no-CHH	no-RdDM	LowExpressed	.	.	.	.
Chr1	12371978	12372588	AT1TE40255	.	+	ATDNA12T3_2	.	DNA	610	short	660	high	2139134	pericentromeric	513	no-CHH	no-CHH	.	.	.	.	.
Chr1	12372765	12373301	AT1TE40260	.	+	ARNOLDY1	MuDR	DNA	536	short	237	high	2138421	pericentromeric	1131	no-RdDM	no-CHH	.	.	.	.	.
Chr1	12373457	12374091	AT1TE40265	.	+	ATHATN2	HAT	DNA	634	short	46	low	2137631	pericentromeric	341	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12380647	12381184	AT1TE40280	.	-	ATHATN10	HAT	DNA	537	short	48	low	2130538	pericentromeric	960	no-RdDM	no-CHH	.	.	.	.	.
Chr1	12381498	12381898	AT1TE40285	.	+	ATDNA2T9C	MuDR	DNA	400	short	242	high	2129824	pericentromeric	1811	no-CHH	no-CHH	.	.	.	.	.
Chr1	12387694	12388109	AT1TE40295	.	+	ARNOLD4	MuDR	DNA	415	short	23	low	2123613	pericentromeric	563	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12388109	12388352	AT1TE40300	.	+	HELITRONY1B	Helitron	RC	243	short	414	high	2123370	pericentromeric	320	no-CHH	no-CHH	.	.	.	.	.
Chr1	12389720	12390060	AT1TE40305	.	+	ATLINE2	L1	LINE	340	short	138	medium	2121662	pericentromeric	264	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	12394284	12394446	AT1TE40315	.	+	RathE1_cons	.	RathE1_cons	162	short	213	high	2117276	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	12403229	12404876	AT1TE40340	.	-	ATLANTYS1	Gypsy	LTR	1647	short	153	medium	2106846	pericentromeric	2193	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	12405286	12405918	AT1TE40345	.	-	TAT1_ATH	Gypsy	LTR	632	short	87	medium	2105804	pericentromeric	4250	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	12406581	12406659	AT1TE40350	.	-	ATCOPIA57	Copia	LTR	78	tiny	48	low	2105063	pericentromeric	5010	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	12406708	12410000	AT1TE40355	.	+	ATCOPIA60	Copia	LTR	3292	medium	4	low	2101722	pericentromeric	1669	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	12409570,12409570,12407180	12406657,12406659,12409976	-,-,+	transcript_id-"fa1b15cd-0052-4c06-9b81-88c2963e9982|11",transcript_id-"9c29a9d4-5a38-4097-af4c-a06f504685e9|3",transcript_id-"1dcc2071-4e0a-4ae2-958c-d6df0a4ba0c9|5"
Chr1	12410000	12412694	AT1TE40360	.	-	ATCOPIA57	Copia	LTR	2694	medium	48	low	2099028	pericentromeric	0	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	12410497	12411549	AT1TE40365	.	-	ATCOPIA57	Copia	LTR	1052	short	48	low	2100173	pericentromeric	120	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	12412694	12412746	AT1TE40370	.	-	ATCOPIA57	Copia	LTR	52	tiny	48	low	2098976	pericentromeric	180	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	12412842	12413622	AT1TE40375	.	+	ATCOPIA52	Copia	LTR	780	short	7	low	2098100	pericentromeric	328	no-CHH	no-CHH	.	.	.	.	.
Chr1	12413661	12415420	AT1TE40380	.	+	ATCOPIA82	Copia	LTR	1759	short	7	low	2096302	pericentromeric	1147	no-CHH	no-CHH	.	.	.	.	.
Chr1	12422679	12423456	AT1TE40400	.	-	ATREP10D	Helitron	RC	777	short	1295	high	2088266	pericentromeric	1433	no-CHH	no-CHH	.	.	.	.	.
Chr1	12425560	12425646	AT1TE40405	.	-	HELITRONY1E	Helitron	RC	86	tiny	447	high	2086076	pericentromeric	1184	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	12425646	12425689	AT1TE40410	.	-	ATREP19	.	DNA	43	tiny	189	medium	2086033	pericentromeric	1141	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	12425689	12426661	AT1TE40415	.	+	HELITRONY1E	Helitron	RC	972	short	447	high	2085061	pericentromeric	169	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12426661	12426682	AT1TE40420	.	+	ATREP1	Helitron	RC	21	tiny	498	high	2085040	pericentromeric	148	no-CHH	no-CHH	.	.	.	.	.
Chr1	12439275	12439396	AT1TE40460	.	+	ATREP5	Helitron	RC	121	short	624	high	2072326	pericentromeric	38	no-CHH	no-CHH	.	.	.	.	.
Chr1	12439396	12440220	AT1TE40465	.	+	HELITRONY1B	Helitron	RC	824	short	414	high	2071502	pericentromeric	159	no-CHH	no-CHH	.	.	.	.	.
Chr1	12440220	12440987	AT1TE40470	.	-	ATREP10A	Helitron	RC	767	short	279	high	2070735	pericentromeric	405	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	12457431	12457684	AT1TE40520	.	+	ATREP1	Helitron	RC	253	short	498	high	2054038	pericentromeric	496	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	12457685	12458343	AT1TE40525	.	+	ATREP2A	Helitron	RC	658	short	116	medium	2053379	pericentromeric	734	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12458343	12458551	AT1TE40530	.	+	ATREP3	Helitron	RC	208	short	1439	high	2053171	pericentromeric	526	no-CHH	no-CHH	.	.	.	.	.
Chr1	12466961	12467841	AT1TE40560	.	-	Unassigned	.	Unassigned	880	short	.	low	2043881	pericentromeric	1050	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	12467042	12467291	AT1TE40565	.	-	HELITRONY1C	Helitron	RC	249	short	120	medium	2044431	pericentromeric	1131	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	12467834	12468306	AT1TE40570	.	+	ATDNA12T3_2	.	DNA	472	short	660	high	2043416	pericentromeric	1923	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12468655	12468734	AT1TE40575	.	-	ATCOPIA13	Copia	LTR	79	tiny	35	low	2042988	pericentromeric	2744	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12468905	12468972	AT1TE40580	.	-	ATREP10B	Helitron	RC	67	tiny	491	high	2042750	pericentromeric	2994	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	12468972	12469066	AT1TE40585	.	+	ATREP10C	Helitron	RC	94	tiny	123	medium	2042656	pericentromeric	3061	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	12469066	12469123	AT1TE40590	.	+	ATREP10C	Helitron	RC	57	tiny	123	medium	2042599	pericentromeric	3155	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12469123	12470347	AT1TE40595	.	-	ATREP10D	Helitron	RC	1224	short	1295	high	2041375	pericentromeric	2642	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	12470347	12470371	AT1TE40600	.	+	ATREP10B	Helitron	RC	24	tiny	491	high	2041351	pericentromeric	2618	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	12470416	12471254	AT1TE40605	.	+	TAG2	HAT	DNA	838	short	86	medium	2040468	pericentromeric	1735	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12474040	12474490	AT1TE40610	.	-	ATREP5	Helitron	RC	450	short	624	high	2037232	pericentromeric	409	no-CHH	no-CHH	.	.	.	.	.
Chr1	12475264	12476769	AT1TE40615	.	-	ATREP10B	Helitron	RC	1505	short	491	high	2034953	pericentromeric	1633	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	12476769	12478196	AT1TE40620	.	+	VANDALNX2	MuDR	DNA	1427	short	37	low	2033526	pericentromeric	3138	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12481426	12481673	AT1TE40630	.	+	DT1	Mariner	DNA	247	short	123	medium	2030049	pericentromeric	4293	no-CHH	no-CHH	.	.	.	.	.
Chr1	12482330	12483086	AT1TE40635	.	-	HELITRONY1D	Helitron	RC	756	short	756	high	2028636	pericentromeric	2880	no-CHH	no-CHH	.	.	.	.	.
Chr1	12483086	12483559	AT1TE40640	.	-	ATLINE2	L1	LINE	473	short	138	medium	2028163	pericentromeric	2407	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	12483559	12484873	AT1TE40645	.	-	ATREP10D	Helitron	RC	1314	short	1295	high	2026849	pericentromeric	1093	no-CHH	no-CHH	.	.	.	.	.
Chr1	12494576	12494613	AT1TE40670	.	+	ATMUN1	MuDR	DNA	37	tiny	107	medium	2017109	pericentromeric	62	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	12494613	12494935	AT1TE40675	.	+	ATDNA2T9C	MuDR	DNA	322	short	242	high	2016787	pericentromeric	99	no-CHH	no-CHH	.	.	.	.	.
Chr1	12496645	12497151	AT1TE40680	.	-	HELITRON2	Helitron	RC	506	short	194	medium	2014571	pericentromeric	848	no-CHH	no-CHH	.	.	.	.	.
Chr1	12499787	12500300	AT1TE40685	.	-	ATREP1	Helitron	RC	513	short	498	high	2011422	pericentromeric	987	no-RdDM	no-CHH	.	.	.	.	.
Chr1	12500394	12501185	AT1TE40690	.	-	ATHPOGON1	Pogo	DNA	791	short	174	medium	2010537	pericentromeric	1594	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	12501185	12503392	AT1TE40695	.	+	ATREP10D	Helitron	RC	2207	medium	1295	high	2008330	pericentromeric	57	no-CHH	no-CHH	.	.	.	.	.
Chr1	12506347	12508398	AT1TE40700	.	-	ATREP11	Helitron	RC	2051	medium	841	high	2003324	pericentromeric	149	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	12507346	12507697	AT1TE40705	.	+	ATREP10B	Helitron	RC	351	short	491	high	2004025	pericentromeric	850	no-CHH	no-CHH	.	.	.	.	.
Chr1	12508398	12508506	AT1TE40710	.	-	ATREP10D	Helitron	RC	108	short	1295	high	2003216	pericentromeric	41	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr1	12513190	12513238	AT1TE40720	.	+	ATHILA4B_LTR	Gypsy	LTR	48	tiny	143	medium	1998484	pericentromeric	867	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	12513238	12513824	AT1TE40725	.	+	ATHILA4A	Gypsy	LTR	586	short	310	high	1997898	pericentromeric	281	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	12514632	12514799	AT1TE40730	.	-	ATGP8	Gypsy	LTR	167	short	92	medium	1996923	pericentromeric	0	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	12517271	12517462	AT1TE40735	.	+	ATREP12	Helitron	RC	191	short	22	low	1994260	pericentromeric	750	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12518066	12518122	AT1TE40740	.	-	ATLINE1_3A	L1	LINE	56	tiny	160	medium	1993600	pericentromeric	1545	no-CHH	no-CHH	.	.	.	.	.
Chr1	12524946	12525074	AT1TE40760	.	+	ATLINE1_5	L1	LINE	128	short	91	medium	1986648	pericentromeric	900	no-CHH	no-CHH	.	.	.	.	.
Chr1	12525449	12525577	AT1TE40765	.	+	HELITRONY1E	Helitron	RC	128	short	447	high	1986145	pericentromeric	1403	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12525577	12526506	AT1TE40770	.	+	ATREP11A	Helitron	RC	929	short	95	medium	1985216	pericentromeric	1531	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12526506	12526885	AT1TE40775	.	+	ATREP11	Helitron	RC	379	short	841	high	1984837	pericentromeric	2460	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12526885	12527191	AT1TE40780	.	+	ATHATN5	HAT	DNA	306	short	42	low	1984531	pericentromeric	2839	no-CHH	no-CHH	.	.	.	.	.
Chr1	12527191	12527287	AT1TE40785	.	+	BRODYAGA1A	MuDR	DNA	96	tiny	586	high	1984435	pericentromeric	3145	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	12527297	12527325	AT1TE40790	.	+	ATREP3	Helitron	RC	28	tiny	1439	high	1984397	pericentromeric	3251	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12527567	12527659	AT1TE40795	.	+	ATREP11A	Helitron	RC	92	tiny	95	medium	1984063	pericentromeric	3276	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12529447	12530215	AT1TE40800	.	-	ATREP19	.	DNA	768	short	189	medium	1981507	pericentromeric	720	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr1	12530215	12530262	AT1TE40805	.	+	HELITRONY1D	Helitron	RC	47	tiny	756	high	1981460	pericentromeric	673	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	12530262	12530392	AT1TE40810	.	-	RathE3_cons	.	RathE3_cons	130	short	104	medium	1981330	pericentromeric	543	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12542348	12542532	AT1TE40850	.	+	RathE2_cons	.	RathE2_cons	184	short	74	medium	1969190	pericentromeric	453	no-CHH	no-CHH	.	.	.	.	.
Chr1	12547602	12547626	AT1TE40860	.	+	BRODYAGA2	MuDR	DNA	24	tiny	525	high	1964096	pericentromeric	1577	no-CHH	no-CHH	.	.	.	.	.
Chr1	12547626	12547959	AT1TE40865	.	-	HELITRONY1D	Helitron	RC	333	short	756	high	1963763	pericentromeric	1601	no-CHH	no-CHH	.	.	.	.	.
Chr1	12547959	12548355	AT1TE40870	.	+	ATHATN7	HAT	DNA	396	short	71	medium	1963367	pericentromeric	1934	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	12548355	12548383	AT1TE40875	.	+	ATHATN7	HAT	DNA	28	tiny	71	medium	1963339	pericentromeric	2330	no-CHH	no-CHH	.	.	.	.	.
Chr1	12548738	12548823	AT1TE40880	.	-	ATREP4	Helitron	RC	85	tiny	832	high	1962899	pericentromeric	2178	no-CHH	no-CHH	.	.	.	.	.
Chr1	12548823	12550030	AT1TE40885	.	+	ATREP10D	Helitron	RC	1207	short	1295	high	1961692	pericentromeric	971	no-CHH	no-CHH	.	.	.	.	.
Chr1	12550032	12550121	AT1TE40890	.	+	ATREP11	Helitron	RC	89	tiny	841	high	1961601	pericentromeric	880	no-CHH	no-CHH	.	.	.	.	.
Chr1	12554548	12555313	AT1TE40900	.	-	HELITRONY3	Helitron	RC	765	short	1399	high	1956409	pericentromeric	249	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12561908	12562099	AT1TE40920	.	-	HELITRONY1E	Helitron	RC	191	short	447	high	1949623	pericentromeric	2826	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	12562099	12564283	AT1TE40925	.	-	ATREP3	Helitron	RC	2184	medium	1439	high	1947439	pericentromeric	1708	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12565292	12565672	AT1TE40930	.	+	TAG3N1	HAT	DNA	380	short	97	medium	1946050	pericentromeric	319	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12565672	12565951	AT1TE40935	.	-	ATDNAI27T9A	MuDR	DNA	279	short	116	medium	1945771	pericentromeric	40	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12566242	12568303	AT1TE40940	.	+	ATGP2N	Gypsy	LTR	2061	medium	54	medium	1943419	pericentromeric	0	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	12568437	12568468	AT1TE40945	.	-	LIMPET1	MuDR	DNA	31	tiny	116	medium	1943254	pericentromeric	1822	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	12569338	12569583	AT1TE40950	.	-	LIMPET1	MuDR	DNA	245	short	116	medium	1942139	pericentromeric	2723	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12569583	12572711	AT1TE40955	.	-	ATGP2	Gypsy	LTR	3128	medium	48	low	1939011	pericentromeric	2968	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	12572722	12572963	AT1TE40960	.	-	LIMPET1	MuDR	DNA	241	short	116	medium	1938759	pericentromeric	4758	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	12573375	12573529	AT1TE40965	.	-	ATDNAI26T9	MuDR	DNA	154	short	25	low	1938193	pericentromeric	4192	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12574465	12574595	AT1TE40970	.	-	LIMPET1	MuDR	DNA	130	short	116	medium	1937127	pericentromeric	3126	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	12574603	12574908	AT1TE40975	.	+	TAG3N1	HAT	DNA	305	short	97	medium	1936814	pericentromeric	2813	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	12576207	12576510	AT1TE40980	.	-	ATDNA12T3_2	.	DNA	304	short	660	high	1935212	pericentromeric	1211	.	.	.	.	.	.	.
Chr1	12576535	12576782	AT1TE40985	.	-	HELITRONY3	Helitron	RC	247	short	1399	high	1934940	pericentromeric	939	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12577172	12577628	AT1TE40990	.	-	ATREP15	Helitron	RC	456	short	1003	high	1934094	pericentromeric	93	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12581910	12582918	AT1TE41000	.	-	HELITRON1	Helitron	RC	1008	short	130	medium	1928804	pericentromeric	120	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	12583267	12584273	AT1TE41005	.	+	HELITRONY1E	Helitron	RC	1006	short	447	high	1927449	pericentromeric	61	no-CHH	no-CHH	.	.	.	.	.
Chr1	12584273	12584300	AT1TE41010	.	+	HELITRONY1E	Helitron	RC	27	tiny	447	high	1927422	pericentromeric	286	no-CHH	no-CHH	.	.	.	.	.
Chr1	12590347	12590958	AT1TE41020	.	-	HELITRONY3	Helitron	RC	611	short	1399	high	1920764	pericentromeric	263	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	12592610	12592835	AT1TE41025	.	-	ATDNAI27T9C	MuDR	DNA	225	short	108	medium	1918887	pericentromeric	0	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	12592984	12593289	AT1TE41030	.	-	LIMPET1	MuDR	DNA	305	short	116	medium	1918433	pericentromeric	247	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	12592174	12593483	+	transcript_id-"c0393271-25ba-41a2-b217-744c984c1df6|3"
Chr1	12593289	12593311	AT1TE41035	.	+	ATDNAI27T9C	MuDR	DNA	22	tiny	108	medium	1918411	pericentromeric	552	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	12593311	12593599	AT1TE41040	.	-	ATDNAI27T9A	MuDR	DNA	288	short	116	medium	1918123	pericentromeric	574	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	12592174	12593483	+	transcript_id-"c0393271-25ba-41a2-b217-744c984c1df6|3"
Chr1	12593886	12594542	AT1TE41045	.	+	BRODYAGA1A	MuDR	DNA	656	short	586	high	1917180	pericentromeric	567	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12594543	12594591	AT1TE41050	.	-	HELITRONY1E	Helitron	RC	49	tiny	447	high	1917131	pericentromeric	518	.	.	.	.	.	.	.
Chr1	12594591	12594729	AT1TE41055	.	+	ATREP3	Helitron	RC	138	short	1439	high	1916993	pericentromeric	380	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	12601414	12601836	AT1TE41070	.	+	HELITRON3	Helitron	RC	422	short	53	medium	1909886	pericentromeric	1786	no-CHH	no-CHH	.	.	.	.	.
Chr1	12601905	12602071	AT1TE41075	.	+	ATHATN10	HAT	DNA	166	short	48	low	1909651	pericentromeric	2277	no-CHH	no-CHH	.	.	.	.	.
Chr1	12603509	12603905	AT1TE41080	.	-	ATMUN1	MuDR	DNA	396	short	107	medium	1907817	pericentromeric	668	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	12603905	12603927	AT1TE41085	.	+	ATMUN1	MuDR	DNA	22	tiny	107	medium	1907795	pericentromeric	646	no-CHH	no-CHH	.	.	.	.	.
Chr1	12603927	12604200	AT1TE41090	.	-	ATREP5	Helitron	RC	273	short	624	high	1907522	pericentromeric	373	no-CHH	no-CHH	.	.	.	.	.
Chr1	12604200	12604330	AT1TE41095	.	+	ATREP6	Helitron	RC	130	short	181	medium	1907392	pericentromeric	243	no-CHH	no-CHH	.	.	.	.	.
Chr1	12610517	12610548	AT1TE41110	.	+	BRODYAGA1	MuDR	DNA	31	tiny	251	high	1901174	pericentromeric	22	no-RdDM	no-CHH	.	.	.	.	.
Chr1	12610548	12611119	AT1TE41115	.	+	BRODYAGA1A	MuDR	DNA	571	short	586	high	1900603	pericentromeric	53	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	12612938	12613280	AT1TE41120	.	+	ATLINE2	L1	LINE	342	short	138	medium	1898442	pericentromeric	275	no-CHH	no-CHH	.	.	.	.	.
Chr1	12613365	12613422	AT1TE41125	.	-	HELITRON2	Helitron	RC	57	tiny	194	medium	1898300	pericentromeric	702	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	12613422	12614189	AT1TE41130	.	-	HELITRON2	Helitron	RC	767	short	194	medium	1897533	pericentromeric	759	no-CHH	no-CHH	.	.	.	.	.
Chr1	12614436	12614601	AT1TE41135	.	+	HELITRONY1D	Helitron	RC	165	short	756	high	1897121	pericentromeric	1326	no-CHH	no-CHH	.	.	.	.	.
Chr1	12614601	12615151	AT1TE41140	.	-	TNAT2A	.	DNA	550	short	38	low	1896571	pericentromeric	776	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12615151	12615790	AT1TE41145	.	-	ATCOPIA30	Copia	LTR	639	short	33	low	1895932	pericentromeric	137	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	12618382	12618405	AT1TE41150	.	-	HELITRONY3	Helitron	RC	23	tiny	1399	high	1893317	pericentromeric	1430	no-CHH	no-CHH	.	.	.	.	.
Chr1	12618405	12618434	AT1TE41155	.	+	HELITRONY1A	Helitron	RC	29	tiny	271	high	1893288	pericentromeric	1453	no-CHH	no-CHH	.	.	.	.	.
Chr1	12618434	12618480	AT1TE41160	.	-	ATREP10D	Helitron	RC	46	tiny	1295	high	1893242	pericentromeric	1482	no-CHH	no-CHH	.	.	.	.	.
Chr1	12618480	12618546	AT1TE41165	.	+	ATREP1	Helitron	RC	66	tiny	498	high	1893176	pericentromeric	1528	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12618546	12619858	AT1TE41170	.	+	ATREP1	Helitron	RC	1312	short	498	high	1891864	pericentromeric	1594	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12619859	12620055	AT1TE41175	.	+	ATREP10D	Helitron	RC	196	short	1295	high	1891667	pericentromeric	2907	no-CHH	no-CHH	.	.	.	.	.
Chr1	12620055	12620343	AT1TE41180	.	+	HELITRONY3	Helitron	RC	288	short	1399	high	1891379	pericentromeric	3103	no-CHH	no-CHH	.	.	.	.	.
Chr1	12620343	12621890	AT1TE41185	.	-	HELITRONY3	Helitron	RC	1547	short	1399	high	1889832	pericentromeric	1586	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	12621890	12622016	AT1TE41190	.	+	ATREP4	Helitron	RC	126	short	832	high	1889706	pericentromeric	1460	no-CHH	no-CHH	.	.	.	.	.
Chr1	12622018	12622040	AT1TE41195	.	+	ATREP10D	Helitron	RC	22	tiny	1295	high	1889682	pericentromeric	1436	no-CHH	no-CHH	.	.	.	.	.
Chr1	12622257	12622537	AT1TE41200	.	-	ATCOPIA85	Copia	LTR	280	short	7	low	1889185	pericentromeric	939	no-CHH	no-CHH	.	.	.	.	.
Chr1	12624481	12624519	AT1TE41205	.	+	HELITRONY1D	Helitron	RC	38	tiny	756	high	1887203	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	12624519	12625105	AT1TE41210	.	-	ATREP10D	Helitron	RC	586	short	1295	high	1886617	pericentromeric	32	no-CHH	no-CHH	.	.	.	.	.
Chr1	12625228	12625471	AT1TE41215	.	+	ATLINE1_3A	L1	LINE	243	short	160	medium	1886251	pericentromeric	741	no-CHH	no-CHH	.	.	.	.	.
Chr1	12625471	12626115	AT1TE41220	.	-	ATREP11	Helitron	RC	644	short	841	high	1885607	pericentromeric	984	no-CHH	no-CHH	.	.	.	.	.
Chr1	12626115	12626295	AT1TE41225	.	-	HELITRONY1D	Helitron	RC	180	short	756	high	1885427	pericentromeric	1628	no-CHH	no-CHH	.	.	.	.	.
Chr1	12626456	12630547	AT1TE41230	.	+	ATENSPM1A	En-Spm	DNA	4091	medium	77	medium	1881175	pericentromeric	1969	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	12627463,12627463,12627463,12627467,12629114	12630112,12630119,12630127,12630129,12630076	+,+,+,+,+	transcript_id-"0b2fefaa-4bc0-43c2-8f65-3a6331794e1f|10",transcript_id-"d98039f9-26f2-4e54-b733-b06a53744ed6|22",transcript_id-"c52b65f2-9dd6-4c85-89b9-ac4d530194ce|9",transcript_id-"6352bb4a-bc4f-4ab1-8fe8-3dabf62c9288|21",transcript_id-"a12691b2-0fcd-439f-bf8a-454a169257eb|3"
Chr1	12630904	12631022	AT1TE41235	.	+	ATIS112A	Harbinger	DNA	118	short	173	medium	1880700	pericentromeric	6031	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	12631495	12632463	AT1TE41240	.	-	ATREP11A	Helitron	RC	968	short	95	medium	1879259	pericentromeric	4590	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	12632666	12633185	AT1TE41245	.	+	ATREP15	Helitron	RC	519	short	1003	high	1878537	pericentromeric	3868	no-CHH	no-CHH	.	.	.	.	.
Chr1	12633185	12633406	AT1TE41250	.	+	ATREP3	Helitron	RC	221	short	1439	high	1878316	pericentromeric	3647	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	12633406	12633624	AT1TE41255	.	+	ATREP1	Helitron	RC	218	short	498	high	1878098	pericentromeric	3429	no-CHH	no-CHH	.	.	.	.	.
Chr1	12633624	12636327	AT1TE41260	.	+	HELITRONY1B	Helitron	RC	2703	medium	414	high	1875395	pericentromeric	726	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	12636327	12636722	AT1TE41265	.	+	HELITRONY1B	Helitron	RC	395	short	414	high	1875000	pericentromeric	331	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12636722	12636874	AT1TE41270	.	+	ATREP3	Helitron	RC	152	short	1439	high	1874848	pericentromeric	179	no-CHH	no-CHH	.	.	.	.	.
Chr1	12638700	12638777	AT1TE41275	.	-	ATENSPM3	En-Spm	DNA	77	tiny	98	medium	1872945	pericentromeric	150	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	12640890	12642416	AT1TE41280	.	-	ATCOPIA15	Copia	LTR	1526	short	14	low	1869306	pericentromeric	2340	no-CHH	no-CHH	.	.	.	.	.
Chr1	12642434	12642564	AT1TE41285	.	-	ATCOPIA72	Copia	LTR	130	short	4	low	1869158	pericentromeric	3884	no-CHH	no-CHH	.	.	.	.	.
Chr1	12645407	12645885	AT1TE41290	.	-	HELITRON2	Helitron	RC	478	short	194	medium	1865837	pericentromeric	1202	no-CHH	no-CHH	.	.	.	.	.
Chr1	12646095	12646216	AT1TE41295	.	-	RathE2_cons	.	RathE2_cons	121	short	74	medium	1865506	pericentromeric	871	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12646248	12646503	AT1TE41300	.	-	HELITRON5	Helitron	RC	255	short	56	medium	1865219	pericentromeric	584	no-CHH	no-CHH	.	.	.	.	.
Chr1	12651409	12651914	AT1TE41310	.	+	ATHATN3A	HAT	DNA	505	short	20	low	1859808	pericentromeric	0	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr1	12653039	12653378	AT1TE41315	.	+	TSCL	.	LINE?	339	short	81	medium	1858344	pericentromeric	393	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	12662730	12662924	AT1TE41340	.	-	RathE1_cons	.	RathE1_cons	194	short	213	high	1848798	pericentromeric	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	12664496	12673969	AT1TE41345	.	-	ATLANTYS2	Gypsy	LTR	9473	long	179	medium	1837753	pericentromeric	943	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	12664988,12664993	12667961,12667961	+,+	transcript_id-"dcc8ad08-3f6d-46a8-8930-4614bf052309|12",transcript_id-"8eac5b91-c4c8-4eaa-af6f-98ff5d17547d|16"
Chr1	12674459	12684931	AT1TE41350	.	-	VANDAL16	MuDR	DNA	10472	long	42	low	1826791	pericentromeric	385	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	12688764	12688951	AT1TE41360	.	+	ATLINE1A	L1	LINE	187	short	289	high	1822771	pericentromeric	337	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	12689891	12690138	AT1TE41365	.	+	ATDNA12T3_2	.	DNA	247	short	660	high	1821584	pericentromeric	1464	no-CHH	no-CHH	.	.	.	.	.
Chr1	12690263	12690354	AT1TE41370	.	-	HELITRONY3	Helitron	RC	91	tiny	1399	high	1821368	pericentromeric	1836	no-CHH	no-CHH	.	.	.	.	.
Chr1	12690354	12691380	AT1TE41375	.	+	ATREP11	Helitron	RC	1026	short	841	high	1820342	pericentromeric	1630	no-CHH	no-CHH	.	.	.	.	.
Chr1	12691381	12691420	AT1TE41380	.	-	BRODYAGA1A	MuDR	DNA	40	tiny	586	high	1820302	pericentromeric	1590	.	.	.	.	.	.	.
Chr1	12691420	12691532	AT1TE41385	.	-	VANDAL14	MuDR	DNA	112	short	25	low	1820190	pericentromeric	1478	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	12692263	12692502	AT1TE41390	.	-	VANDAL13	MuDR	DNA	239	short	38	low	1819220	pericentromeric	508	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12693752	12694558	AT1TE41395	.	+	ATREP4	Helitron	RC	806	short	832	high	1817164	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	12695085	12695733	AT1TE41400	.	-	ATREP10D	Helitron	RC	648	short	1295	high	1815989	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	12695733	12695770	AT1TE41405	.	+	ATREP10B	Helitron	RC	37	tiny	491	high	1815952	pericentromeric	0	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	12699868	12701299	AT1TE41415	.	+	ATENSPM2	En-Spm	DNA	1431	short	114	medium	1810423	pericentromeric	2090	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	12701957	12702535	AT1TE41420	.	+	ATREP1	Helitron	RC	578	short	498	high	1809187	pericentromeric	4179	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	12702535	12702731	AT1TE41425	.	+	ATDNAI27T9C	MuDR	DNA	196	short	108	medium	1808991	pericentromeric	4757	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	12704886	12704921	AT1TE41430	.	+	BRODYAGA1A	MuDR	DNA	35	tiny	586	high	1806801	pericentromeric	4206	no-CHH	no-CHH	.	.	.	.	.
Chr1	12704921	12705222	AT1TE41435	.	-	ATDNA2T9C	MuDR	DNA	301	short	242	high	1806500	pericentromeric	3905	no-CHH	no-CHH	.	.	.	.	.
Chr1	12710569	12710841	AT1TE41445	.	+	ATHILA7	Gypsy	LTR	272	short	134	medium	1800881	pericentromeric	146	no-CHH	no-CHH	.	.	.	.	.
Chr1	12711073	12711180	AT1TE41450	.	-	ATREP15	Helitron	RC	107	short	1003	high	1800542	pericentromeric	650	no-CHH	no-CHH	.	.	.	.	.
Chr1	12713445	12713480	AT1TE41455	.	+	VANDAL2N1	MuDR	DNA	35	tiny	51	medium	1798242	pericentromeric	3022	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	12713487	12728545	AT1TE41460	.	+	VANDAL2	MuDR	DNA	15058	long	43	low	1783177	pericentromeric	3064	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	12722937	12722089	-	transcript_id-"0634e6e4-6eb7-4466-82c9-304ab4833297|7"
Chr1	12728937	12729681	AT1TE41465	.	+	HELITRONY3	Helitron	RC	744	short	1399	high	1782041	pericentromeric	6704	DCL3-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12730089	12730320	AT1TE41470	.	+	ATDNAI27T9A	MuDR	DNA	231	short	116	medium	1781402	pericentromeric	6065	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	12730320	12730489	AT1TE41475	.	-	ATDNAI27T9A	MuDR	DNA	169	short	116	medium	1781233	pericentromeric	5896	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	12730822	12731169	AT1TE41480	.	-	ATDNA1T9A	MuDR	DNA	347	short	36	low	1780553	pericentromeric	5216	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	12731811	12732371	AT1TE41485	.	-	ATDNAI27T9B	MuDR	DNA	560	short	43	low	1779351	pericentromeric	4014	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	12733079	12732216	-	transcript_id-"fdab921f-3885-4c1f-a7e6-bcb43e6d3a94|3"
Chr1	12732945	12733344	AT1TE41490	.	-	ATDNAI27T9A	MuDR	DNA	399	short	116	medium	1778378	pericentromeric	3041	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	12733079	12732216	-	transcript_id-"fdab921f-3885-4c1f-a7e6-bcb43e6d3a94|3"
Chr1	12733350	12733441	AT1TE41495	.	-	LIMPET1	MuDR	DNA	91	tiny	116	medium	1778281	pericentromeric	2944	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	12733500	12734177	AT1TE41500	.	+	LIMPET1	MuDR	DNA	677	short	116	medium	1777545	pericentromeric	2208	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	12734326	12734552	AT1TE41505	.	+	ATDNAI27T9C	MuDR	DNA	227	short	108	medium	1777170	pericentromeric	1833	.	.	LowExpressed	.	.	.	.
Chr1	12735110	12735992	AT1TE41510	.	-	ATREP19	.	DNA	882	short	189	medium	1775730	pericentromeric	393	no-CHH	no-CHH	.	.	.	.	.
Chr1	12738259	12738292	AT1TE41515	.	+	BRODYAGA1	MuDR	DNA	33	tiny	251	high	1773430	pericentromeric	532	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	12738292	12738312	AT1TE41520	.	-	BRODYAGA1	MuDR	DNA	20	tiny	251	high	1773410	pericentromeric	565	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	12738312	12740004	AT1TE41525	.	-	BRODYAGA1A	MuDR	DNA	1692	short	586	high	1771718	pericentromeric	585	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12739496	12739623	AT1TE41530	.	-	BRODYAGA1A	MuDR	DNA	127	short	586	high	1772099	pericentromeric	1769	no-CHH	no-CHH	.	.	.	.	.
Chr1	12740004	12740064	AT1TE41535	.	-	BRODYAGA1	MuDR	DNA	60	tiny	251	high	1771658	pericentromeric	2277	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	12742145	12742665	AT1TE41540	.	+	HELITRONY1D	Helitron	RC	520	short	756	high	1769057	pericentromeric	1396	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	12742983	12743403	AT1TE41545	.	+	ATREP3	Helitron	RC	420	short	1439	high	1768319	pericentromeric	658	no-CHH	no-CHH	.	.	.	.	.
Chr1	12745850	12746413	AT1TE41550	.	+	HELITRON4	Helitron	RC	563	short	199	medium	1765309	pericentromeric	210	no-CHH	no-CHH	.	.	.	.	.
Chr1	12751151	12751235	AT1TE41560	.	-	ATLINE1_6	L1	LINE	84	tiny	129	medium	1760487	pericentromeric	1027	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr1	12751235	12752462	AT1TE41565	.	-	ATLINE1_6	L1	LINE	1227	short	129	medium	1759260	pericentromeric	1111	no-CHH	no-CHH	.	.	.	.	.
Chr1	12753467	12753511	AT1TE41570	.	+	ATCOPIA93	Copia	LTR	44	tiny	10	low	1758211	pericentromeric	3343	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	12753511	12755059	AT1TE41575	.	+	ATCOPIA93	Copia	LTR	1548	short	10	low	1756663	pericentromeric	3387	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	12755059	12760395	AT1TE41580	.	+	ATCOPIA93	Copia	LTR	5336	long	10	low	1751327	pericentromeric	3557	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	12760395	12761574	AT1TE41585	.	-	ATDNAI27T9C	MuDR	DNA	1179	short	108	medium	1750148	pericentromeric	2378	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	12761603	12762391	AT1TE41590	.	+	ATREP10B	Helitron	RC	788	short	491	high	1749331	pericentromeric	1561	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	12762391	12762481	AT1TE41595	.	+	ATREP4	Helitron	RC	90	tiny	832	high	1749241	pericentromeric	1471	no-CHH	no-CHH	.	.	.	.	.
Chr1	12762668	12763393	AT1TE41600	.	+	ATREP3	Helitron	RC	725	short	1439	high	1748329	pericentromeric	559	no-CHH	no-CHH	.	.	.	.	.
Chr1	12764460	12765070	AT1TE41605	.	-	BRODYAGA1	MuDR	DNA	610	short	251	high	1746652	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	12765528	12766385	AT1TE41610	.	-	ATREP15	Helitron	RC	857	short	1003	high	1745337	pericentromeric	0	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	12765622	12766227	AT1TE41615	.	-	HELITRONY1D	Helitron	RC	605	short	756	high	1745495	pericentromeric	133	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	12768833	12768946	AT1TE41620	.	-	ATREP11	Helitron	RC	114	short	841	high	1742776	pericentromeric	806	.	.	.	.	.	.	.
Chr1	12768946	12780004	AT1TE41625	.	-	ATREP15	Helitron	RC	11058	long	1003	high	1731718	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	12772373	12773172	AT1TE41630	.	+	ATREP5	Helitron	RC	800	short	624	high	1738550	pericentromeric	0	.	.	.	.	.	.	.
Chr1	12786026	12786825	AT1TE41670	.	+	ATREP5	Helitron	RC	800	short	624	high	1724897	pericentromeric	0	.	.	.	.	.	.	.
Chr1	12792759	12793590	AT1TE41680	.	-	ATREP1	Helitron	RC	832	short	498	high	1718132	pericentromeric	54	.	.	.	.	.	.	.
Chr1	12793591	12793657	AT1TE41685	.	-	ATREP15	Helitron	RC	67	tiny	1003	high	1718065	pericentromeric	0	.	.	.	.	.	.	.
Chr1	12802800	12803671	AT1TE41710	.	+	ATREP9	Helitron	RC	871	short	201	high	1708051	pericentromeric	36	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	12809579	12809650	AT1TE41720	.	-	HELITRONY1D	Helitron	RC	72	tiny	756	high	1702072	pericentromeric	97	.	.	.	.	.	.	.
Chr1	12809650	12810844	AT1TE41725	.	-	ATREP11	Helitron	RC	1194	short	841	high	1700878	pericentromeric	169	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12810844	12811044	AT1TE41730	.	+	ATREP10D	Helitron	RC	200	short	1295	high	1700678	pericentromeric	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	12813937	12816180	AT1TE41735	.	+	ROMANIAT5	Copia	LTR	2243	medium	49	low	1695542	pericentromeric	1368	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12816180	12816250	AT1TE41740	.	+	META1	Copia	LTR	70	tiny	138	medium	1695472	pericentromeric	3611	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12818272	12839582	AT1TE41745	.	+	VANDAL5	MuDR	DNA	21310	long	85	medium	1672140	pericentromeric	5703	no-RdDM	no-RdDM	ExpressedAndAnnotated	12827117	12826028	-	transcript_id-"6991ffe2-8fde-44df-9cb3-fd235dccc565|3"
Chr1	12826807	12827497	AT1TE41750	.	+	VANDAL4	MuDR	DNA	690	short	102	medium	1684225	pericentromeric	14238	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	12827556	12827673	AT1TE41755	.	-	VANDAL4	MuDR	DNA	118	short	102	medium	1684049	pericentromeric	14986	.	.	.	.	.	.	.
Chr1	12830296	12830336	AT1TE41760	.	-	VANDAL4	MuDR	DNA	40	tiny	102	medium	1681386	pericentromeric	17727	no-RdDM	no-CHH	.	.	.	.	.
Chr1	12830336	12832135	AT1TE41765	.	-	VANDAL4	MuDR	DNA	1799	short	102	medium	1679587	pericentromeric	17767	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	12840227	12841118	AT1TE41790	.	-	SADHU	.	Unassigned	891	short	16	low	1670604	pericentromeric	10970	no-CHH	no-CHH	ExpressedAndAnnotated	12841132,12841132	12840232,12840316	-,-	transcript_id-"cbb80317-8051-4b85-966e-1144c044cdef|3",transcript_id-"334e43ff-24b0-4c35-9453-f515d077eff0|4"
Chr1	12841754	12841890	AT1TE41795	.	+	ATCOPIA57	Copia	LTR	136	short	48	low	1669832	pericentromeric	10198	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	12842157	12845721	AT1TE41800	.	+	ATCOPIA36	Copia	LTR	3564	medium	14	low	1666001	pericentromeric	6367	no-RdDM	no-RdDM	ExpressedAndAnnotated	12845340	12845668	+	transcript_id-"8bbfc7be-107d-4fd8-a283-37278f32b3cc|6"
Chr1	12845726	12845932	AT1TE41805	.	+	HELITRONY3	Helitron	RC	206	short	1399	high	1665790	pericentromeric	6156	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	12845933	12845959	AT1TE41810	.	+	SIMPLEHAT2	HAT	DNA	27	tiny	73	medium	1665763	pericentromeric	6129	.	.	.	.	.	.	.
Chr1	12845960	12846615	AT1TE41815	.	+	HELITRONY3	Helitron	RC	656	short	1399	high	1665107	pericentromeric	5473	.	.	.	.	.	.	.
Chr1	12847930	12849661	AT1TE41820	.	+	ATHILA4C	Gypsy	LTR	1731	short	206	high	1662061	pericentromeric	2427	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	12851055	12851196	AT1TE41825	.	-	ATHATN6	HAT	DNA	141	short	43	low	1660526	pericentromeric	892	no-CHH	no-CHH	.	.	.	.	.
Chr1	12853970	12854294	AT1TE41830	.	-	HELITRONY1D	Helitron	RC	324	short	756	high	1657428	pericentromeric	952	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12854294	12854914	AT1TE41835	.	+	ATHATN7	HAT	DNA	620	short	71	medium	1656808	pericentromeric	1276	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12854915	12854952	AT1TE41840	.	-	HELITRONY1A	Helitron	RC	38	tiny	271	high	1656770	pericentromeric	1896	.	.	.	.	.	.	.
Chr1	12854952	12855065	AT1TE41845	.	-	ATREP3	Helitron	RC	113	short	1439	high	1656657	pericentromeric	1934	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	12855065	12856081	AT1TE41850	.	-	ATREP3	Helitron	RC	1016	short	1439	high	1655641	pericentromeric	2047	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	12856081	12856105	AT1TE41855	.	+	ATREP3	Helitron	RC	24	tiny	1439	high	1655617	pericentromeric	3063	PolIV-and-RDR6-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	12856201	12862061	AT1TE41860	.	-	TA11	L1	LINE	5860	long	157	medium	1649661	pericentromeric	2096	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	12862268	12863217	AT1TE41865	.	+	ATREP15	Helitron	RC	949	short	1003	high	1648505	pericentromeric	940	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12866228	12866248	AT1TE41870	.	-	HELITRONY1E	Helitron	RC	21	tiny	447	high	1645474	pericentromeric	0	.	.	.	.	.	.	.
Chr1	12866248	12866863	AT1TE41875	.	-	ATDNA2T9C	MuDR	DNA	615	short	242	high	1644859	pericentromeric	10	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12866863	12867037	AT1TE41880	.	-	RP1_AT	.	DNA	174	short	87	medium	1644685	pericentromeric	226	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	12870144	12870313	AT1TE41890	.	+	ATMU11	MuDR	DNA	169	short	20	low	1641409	pericentromeric	424	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	12872491	12872822	AT1TE41895	.	-	ATREP4	Helitron	RC	331	short	832	high	1638900	pericentromeric	352	no-CHH	no-CHH	.	.	.	.	.
Chr1	12872822	12872949	AT1TE41900	.	-	ATREP10C	Helitron	RC	127	short	123	medium	1638773	pericentromeric	683	no-CHH	no-CHH	.	.	.	.	.
Chr1	12872949	12876830	AT1TE41905	.	+	ATREP3	Helitron	RC	3881	medium	1439	high	1634892	pericentromeric	399	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12876830	12877158	AT1TE41910	.	-	ATREP3	Helitron	RC	328	short	1439	high	1634564	pericentromeric	71	no-CHH	no-CHH	.	.	.	.	.
Chr1	12877158	12877301	AT1TE41915	.	-	HELITRONY1A	Helitron	RC	143	short	271	high	1634421	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	12881668	12881715	AT1TE41925	.	+	ATREP10D	Helitron	RC	47	tiny	1295	high	1630007	pericentromeric	2198	no-CHH	no-CHH	.	.	.	.	.
Chr1	12881715	12882684	AT1TE41930	.	+	ATREP15	Helitron	RC	969	short	1003	high	1629038	pericentromeric	1753	no-CHH	no-CHH	.	.	.	.	.
Chr1	12884586	12885550	AT1TE41935	.	+	ATREP10D	Helitron	RC	964	short	1295	high	1626172	pericentromeric	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	12885652	12885997	AT1TE41940	.	-	ATLINE1_5	L1	LINE	345	short	91	medium	1625725	pericentromeric	1062	no-CHH	no-CHH	.	.	.	.	.
Chr1	12886283	12886983	AT1TE41945	.	-	ATLINE1_4	L1	LINE	700	short	102	medium	1624739	pericentromeric	1693	no-RdDM	no-CHH	.	.	.	.	.
Chr1	12888143	12888251	AT1TE41950	.	+	TNAT2A	.	DNA	108	short	38	low	1623471	pericentromeric	2292	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12888716	12888779	AT1TE41955	.	-	ATLINE1_4	L1	LINE	63	tiny	102	medium	1622943	pericentromeric	1764	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	12888779	12889257	AT1TE41960	.	-	ATHPOGON1	Pogo	DNA	478	short	174	medium	1622465	pericentromeric	1286	no-RdDM	no-CHH	.	.	.	.	.
Chr1	12889974	12890257	AT1TE41965	.	+	ATHATN2	HAT	DNA	283	short	46	low	1621465	pericentromeric	286	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	12894518	12894687	AT1TE41975	.	+	BRODYAGA1A	MuDR	DNA	169	short	586	high	1617035	pericentromeric	1886	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	12894687	12895316	AT1TE41980	.	+	BRODYAGA1A	MuDR	DNA	629	short	586	high	1616406	pericentromeric	1597	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12894922	12895203	AT1TE41985	.	-	BRODYAGA1A	MuDR	DNA	282	short	586	high	1616519	pericentromeric	1710	.	.	.	.	.	.	.
Chr1	12895203	12895269	AT1TE41990	.	+	BRODYAGA1	MuDR	DNA	66	tiny	251	high	1616453	pericentromeric	1644	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	12895316	12896538	AT1TE41995	.	-	BRODYAGA1	MuDR	DNA	1222	short	251	high	1615184	pericentromeric	375	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12897690	12897719	AT1TE42000	.	-	ATREP15	Helitron	RC	29	tiny	1003	high	1614003	pericentromeric	306	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	12897719	12897748	AT1TE42005	.	-	ATREP4	Helitron	RC	29	tiny	832	high	1613974	pericentromeric	335	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	12897748	12899470	AT1TE42010	.	-	ATREP3	Helitron	RC	1722	short	1439	high	1612252	pericentromeric	364	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	12899470	12899772	AT1TE42015	.	+	ATREP17	MuDR	DNA	302	short	34	low	1611950	pericentromeric	2086	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12899772	12899816	AT1TE42020	.	-	ATREP17	MuDR	DNA	44	tiny	34	low	1611906	pericentromeric	2388	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12899876	12900120	AT1TE42025	.	-	ATLINE1_5	L1	LINE	244	short	91	medium	1611602	pericentromeric	2492	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	12900120	12900445	AT1TE42030	.	+	ATLANTYS2	Gypsy	LTR	325	short	179	medium	1611277	pericentromeric	2736	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	12900445	12900825	AT1TE42035	.	-	BRODYAGA1A	MuDR	DNA	380	short	586	high	1610897	pericentromeric	3061	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	12901350	12901455	AT1TE42040	.	+	ATREP10A	Helitron	RC	105	short	279	high	1610267	pericentromeric	3966	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	12903414	12903458	AT1TE42045	.	-	ATREP3	Helitron	RC	44	tiny	1439	high	1608264	pericentromeric	5834	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	12903458	12904712	AT1TE42050	.	-	ATREP10A	Helitron	RC	1254	short	279	high	1607010	pericentromeric	4580	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12904712	12905225	AT1TE42055	.	+	ATREP4	Helitron	RC	513	short	832	high	1606497	pericentromeric	4067	no-RdDM	no-CHH	.	.	.	.	.
Chr1	12905225	12905261	AT1TE42060	.	-	ATREP10D	Helitron	RC	36	tiny	1295	high	1606461	pericentromeric	4031	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	12905261	12905328	AT1TE42065	.	-	HELITRONY3	Helitron	RC	67	tiny	1399	high	1606394	pericentromeric	3964	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	12906167	12906289	AT1TE42070	.	+	ATDNAI27T9A	MuDR	DNA	122	short	116	medium	1605433	pericentromeric	3003	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	12906536	12906564	AT1TE42075	.	+	LIMPET1	MuDR	DNA	28	tiny	116	medium	1605158	pericentromeric	2728	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12906564	12907856	AT1TE42080	.	+	LIMPET1	MuDR	DNA	1292	short	116	medium	1603866	pericentromeric	1436	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	12914789	12915273	AT1TE42100	.	+	ATREP10D	Helitron	RC	484	short	1295	high	1596449	pericentromeric	873	no-CHH	no-CHH	.	.	.	.	.
Chr1	12918636	12918772	AT1TE42110	.	-	ATLINE1A	L1	LINE	136	short	289	high	1592950	pericentromeric	1051	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12919161	12919553	AT1TE42115	.	+	BRODYAGA1A	MuDR	DNA	392	short	586	high	1592169	pericentromeric	1576	no-CHH	no-CHH	.	.	.	.	.
Chr1	12919553	12919600	AT1TE42120	.	-	ATHATN3	HAT	DNA	47	tiny	70	medium	1592122	pericentromeric	1968	no-CHH	no-CHH	.	.	.	.	.
Chr1	12919718	12920220	AT1TE42125	.	-	HELITRON4	Helitron	RC	502	short	199	medium	1591502	pericentromeric	2133	no-RdDM	no-CHH	.	.	.	.	.
Chr1	12925156	12925217	AT1TE42135	.	-	HELITRONY3	Helitron	RC	61	tiny	1399	high	1586505	pericentromeric	2239	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	12925450	12926377	AT1TE42140	.	-	SIMPLEGUY1	Harbinger	DNA	927	short	116	medium	1585345	pericentromeric	1079	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	12926600	12926810	AT1TE42145	.	+	ATHILA7	Gypsy	LTR	210	short	134	medium	1584912	pericentromeric	646	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	12926913	12927191	AT1TE42150	.	+	ATMU10	MuDR	DNA	278	short	87	medium	1584531	pericentromeric	265	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	12930131	12930287	AT1TE42155	.	+	ATCOPIA68	Copia	LTR	156	short	43	low	1581435	pericentromeric	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12930621	12931063	AT1TE42160	.	-	ATREP19	.	DNA	442	short	189	medium	1580659	pericentromeric	98	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12931469	12931733	AT1TE42165	.	+	HELITRONY3	Helitron	RC	264	short	1399	high	1579989	pericentromeric	73	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	12931861	12932284	AT1TE42170	.	-	ATMU10	MuDR	DNA	423	short	87	medium	1579438	pericentromeric	465	PolIV-and-RDR6-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	12932653	12933030	AT1TE42175	.	+	BRODYAGA1A	MuDR	DNA	377	short	586	high	1578692	pericentromeric	15	no-CHH	no-CHH	.	.	.	.	.
Chr1	12937878	12937930	AT1TE42185	.	-	ATREP10C	Helitron	RC	52	tiny	123	medium	1573792	pericentromeric	189	no-CHH	no-CHH	.	.	.	.	.
Chr1	12937930	12938808	AT1TE42190	.	-	ATREP10D	Helitron	RC	878	short	1295	high	1572914	pericentromeric	241	no-CHH	no-CHH	.	.	.	.	.
Chr1	12938808	12938971	AT1TE42195	.	+	BRODYAGA2	MuDR	DNA	163	short	525	high	1572751	pericentromeric	1119	no-CHH	no-CHH	.	.	.	.	.
Chr1	12942520	12942824	AT1TE42205	.	+	ATSINE4	.	SINE	304	short	98	medium	1568898	pericentromeric	4831	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	12942521	12947058	+	transcript_id-"735f7a72-66ff-4b3d-ac36-a60ceffb9970|3"
Chr1	12942824	12947010	AT1TE42210	.	+	ATENSPM3	En-Spm	DNA	4186	medium	98	medium	1564712	pericentromeric	749	no-RdDM	no-RdDM	ExpressedAndAnnotated	12946313	12946628	+	transcript_id-"234e0fcb-c4ca-450a-bbf1-31c527a3c738|5"
Chr1	12947010	12947118	AT1TE42215	.	+	ATENSPM7	En-Spm	DNA	108	short	74	medium	1564604	pericentromeric	641	no-RdDM	no-CHH	ExpressedAndAnnotated	12942521	12947058	+	transcript_id-"735f7a72-66ff-4b3d-ac36-a60ceffb9970|3"
Chr1	12949476	12949708	AT1TE42220	.	+	ATCOPIA17	Copia	LTR	232	short	16	low	1562014	pericentromeric	698	no-CHH	no-CHH	.	.	.	.	.
Chr1	12949834	12953875	AT1TE42225	.	+	ATENSPM5	En-Spm	DNA	4041	medium	111	medium	1557847	pericentromeric	1056	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	12950297,12950297,12950297,12950297,12950297	12951165,12953254,12953256,12953256,12953256	+,+,+,+,+	transcript_id-"bd10bdca-1e36-4744-916e-19320030388c|9",transcript_id-"6b4136bf-3f32-4ce4-9abd-0adac292ae55|50",transcript_id-"512b88a4-3c64-4e87-b624-ada7e77a0059|27",transcript_id-"7b7e677b-28fa-49ff-8836-f8e68f124e20|12",transcript_id-"e3586ca9-4b97-4cc8-87c2-3d5dd90ec902|14"
Chr1	12953875	12953902	AT1TE42230	.	-	ATENSPM6	En-Spm	DNA	27	tiny	151	medium	1557820	pericentromeric	2525	no-RdDM	no-CHH	.	.	.	.	.
Chr1	12953924	12954132	AT1TE42235	.	-	ATMU2	MuDR	DNA	208	short	64	medium	1557590	pericentromeric	2295	no-RdDM	no-CHH	.	.	.	.	.
Chr1	12957924	12958268	AT1TE42245	.	+	ATDNA12T3_2	.	DNA	344	short	660	high	1553454	pericentromeric	900	PolIV-and-RDR6-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	12959521	12959966	AT1TE42250	.	-	ATGP8	Gypsy	LTR	445	short	92	medium	1551756	pericentromeric	948	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	12961829	12962163	AT1TE42255	.	-	ATMUNX1	MuDR	DNA	334	short	155	medium	1549559	pericentromeric	0	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	12963537	12963565	AT1TE42260	.	+	RathE1_cons	.	RathE1_cons	28	tiny	213	high	1548157	pericentromeric	684	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	12963565	12963716	AT1TE42265	.	+	RathE1_cons	.	RathE1_cons	151	short	213	high	1548006	pericentromeric	712	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	12963807	12964134	AT1TE42270	.	-	ATMUNX1	MuDR	DNA	327	short	155	medium	1547588	pericentromeric	911	no-CHH	no-CHH	.	.	.	.	.
Chr1	12966327	12966899	AT1TE42275	.	-	ATLANTYS3	Gypsy	LTR	572	short	142	medium	1544823	pericentromeric	214	no-RdDM	no-CHH	.	.	.	.	.
Chr1	12967890	12968075	AT1TE42280	.	+	VANDAL1N1	MuDR	DNA	185	short	52	medium	1543647	pericentromeric	1777	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	12968088	12968373	AT1TE42285	.	-	HELITRONY3	Helitron	RC	286	short	1399	high	1543349	pericentromeric	1897	.	.	.	.	.	.	.
Chr1	12968373	12969313	AT1TE42290	.	-	ARNOLDY1	MuDR	DNA	940	short	237	high	1542409	pericentromeric	957	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12974901	12975082	AT1TE42300	.	+	ATHAT1	HAT	DNA	181	short	105	medium	1536640	pericentromeric	2685	no-CHH	no-CHH	.	.	.	.	.
Chr1	12975609	12975733	AT1TE42305	.	-	ATREP9	Helitron	RC	124	short	201	high	1535989	pericentromeric	2034	no-CHH	no-RdDM	.	.	.	.	.
Chr1	12975733	12976098	AT1TE42310	.	-	ATHPOGON3	Pogo	DNA	365	short	118	medium	1535624	pericentromeric	1669	no-CHH	no-RdDM	.	.	.	.	.
Chr1	12976098	12976857	AT1TE42315	.	-	ATHPOGON1	Pogo	DNA	759	short	174	medium	1534865	pericentromeric	910	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	12976857	12976942	AT1TE42320	.	+	HELITRON2	Helitron	RC	85	tiny	194	medium	1534780	pericentromeric	825	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12980274	12980300	AT1TE42330	.	-	BRODYAGA1	MuDR	DNA	26	tiny	251	high	1531422	pericentromeric	525	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12980300	12980537	AT1TE42335	.	-	BRODYAGA1A	MuDR	DNA	237	short	586	high	1531185	pericentromeric	551	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12983043	12983179	AT1TE42340	.	-	BRODYAGA1A	MuDR	DNA	136	short	586	high	1528543	pericentromeric	0	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	12985129	12986235	AT1TE42345	.	-	ATREP10D	Helitron	RC	1106	short	1295	high	1525487	pericentromeric	546	no-CHH	no-CHH	.	.	.	.	.
Chr1	12987699	12987862	AT1TE42350	.	+	ATGP9B	Gypsy	LTR	164	short	27	low	1523860	pericentromeric	3115	.	.	LowExpressed	.	.	.	.
Chr1	12990124	12990931	AT1TE42355	.	+	ATCOPIA94	Copia	LTR	807	short	39	low	1520791	pericentromeric	460	no-CHH	no-CHH	.	.	.	.	.
Chr1	12990931	12991052	AT1TE42360	.	+	ATCOPIA96	Copia	LTR	121	short	16	low	1520670	pericentromeric	339	no-CHH	no-CHH	.	.	.	.	.
Chr1	12992942	12992996	AT1TE42365	.	-	ATREP2	Helitron	RC	54	tiny	164	medium	1518726	pericentromeric	797	no-CHH	no-CHH	.	.	.	.	.
Chr1	12992996	12993612	AT1TE42370	.	-	ATREP2A	Helitron	RC	616	short	116	medium	1518110	pericentromeric	851	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	12993612	12993693	AT1TE42375	.	-	ATREP1	Helitron	RC	81	tiny	498	high	1518029	pericentromeric	1467	no-CHH	no-CHH	.	.	.	.	.
Chr1	12994813	12994981	AT1TE42380	.	-	BRODYAGA1	MuDR	DNA	168	short	251	high	1516741	pericentromeric	2668	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	12994981	12995372	AT1TE42385	.	+	BRODYAGA1A	MuDR	DNA	391	short	586	high	1516350	pericentromeric	2836	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	13000217	13005219	AT1TE42395	.	+	ATGP3	Gypsy	LTR	5002	long	60	medium	1506503	pericentromeric	453	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	13005087,13005105	13005404,13005485	+,+	transcript_id-"a5e2adc1-10c1-41ab-bf56-279d3aa82402|4",transcript_id-"2e6e472a-867d-4f99-8778-f557889ca289|3"
Chr1	13006365	13007984	AT1TE42400	.	-	ATGP3	Gypsy	LTR	1619	short	60	medium	1503738	pericentromeric	178	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	13007693	13007773	AT1TE42405	.	-	ATGP9B	Gypsy	LTR	80	tiny	27	low	1503949	pericentromeric	1506	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	13010029	13011057	AT1TE42410	.	+	TA11	L1	LINE	1028	short	157	medium	1500665	pericentromeric	3842	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	13011057	13012650	AT1TE42415	.	+	ATLINE1_6	L1	LINE	1593	short	129	medium	1499072	pericentromeric	4870	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	13012650	13012798	AT1TE42420	.	-	ATIS112A	Harbinger	DNA	148	short	173	medium	1498924	pericentromeric	5490	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	13015291	13015326	AT1TE42425	.	-	ATREP3	Helitron	RC	35	tiny	1439	high	1496396	pericentromeric	2962	no-CHH	no-CHH	.	.	.	.	.
Chr1	13015326	13017802	AT1TE42430	.	+	ATREP3	Helitron	RC	2476	medium	1439	high	1493920	pericentromeric	486	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13017802	13017883	AT1TE42435	.	-	ATREP3	Helitron	RC	81	tiny	1439	high	1493839	pericentromeric	405	no-CHH	no-CHH	.	.	.	.	.
Chr1	13019296	13019464	AT1TE42440	.	-	ATCOPIA51	Copia	LTR	168	short	14	low	1492258	pericentromeric	245	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	13019464	13021045	AT1TE42445	.	-	ATRE1	Copia	LTR	1581	short	22	low	1490677	pericentromeric	413	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	13021046	13021159	AT1TE42450	.	-	ATCOPIA5	Copia	LTR	114	short	16	low	1490563	pericentromeric	1994	.	.	.	.	.	.	.
Chr1	13021159	13021206	AT1TE42455	.	-	ATCOPIA8B	Copia	LTR	47	tiny	8	low	1490516	pericentromeric	2108	no-RdDM	no-CHH	.	.	.	.	.
Chr1	13021207	13021228	AT1TE42460	.	-	ATCOPIA3	Copia	LTR	22	tiny	8	low	1490494	pericentromeric	2155	.	.	.	.	.	.	.
Chr1	13021228	13022484	AT1TE42465	.	-	ATCOPIA48	Copia	LTR	1256	short	15	low	1489238	pericentromeric	1676	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	13022633	13021936	-	transcript_id-"ea993994-8667-415b-aa93-00fc93a7d5e8|9"
Chr1	13023621	13023787	AT1TE42470	.	-	ATENSPM9	En-Spm	DNA	166	short	97	medium	1487935	pericentromeric	373	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	13024017	13024124	AT1TE42475	.	-	BRODYAGA2	MuDR	DNA	107	short	525	high	1487598	pericentromeric	36	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	13027734	13027937	AT1TE42485	.	+	ATCOPIA95	Copia	LTR	203	short	72	medium	1483785	pericentromeric	271	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	13028439	13028711	AT1TE42490	.	+	ATCOPIA95	Copia	LTR	272	short	72	medium	1483011	pericentromeric	976	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	13029062	13029212	AT1TE42495	.	+	DT1	Mariner	DNA	150	short	123	medium	1482510	pericentromeric	1447	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	13030272	13030468	AT1TE42500	.	-	ATLINE1A	L1	LINE	196	short	289	high	1481254	pericentromeric	191	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13031286	13031482	AT1TE42505	.	-	ATSINE2A	.	SINE	196	short	33	low	1480240	pericentromeric	255	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	13031762	13031961	AT1TE42510	.	+	HELITRONY1B	Helitron	RC	199	short	414	high	1479761	pericentromeric	731	no-CHH	no-CHH	.	.	.	.	.
Chr1	13031961	13032813	AT1TE42515	.	-	HELITRONY1E	Helitron	RC	852	short	447	high	1478909	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	13032813	13032851	AT1TE42520	.	-	ATREP11	Helitron	RC	38	tiny	841	high	1478871	pericentromeric	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	13032851	13032885	AT1TE42525	.	-	ATMUN1	MuDR	DNA	34	tiny	107	medium	1478837	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	13032885	13033193	AT1TE42530	.	+	ATREP10A	Helitron	RC	308	short	279	high	1478529	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	13034009	13034370	AT1TE42535	.	+	TSCL	.	LINE?	361	short	81	medium	1477352	pericentromeric	762	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	13036141	13036721	AT1TE42540	.	+	HELITRONY3	Helitron	RC	580	short	1399	high	1475001	pericentromeric	104	no-CHH	no-CHH	.	.	.	.	.
Chr1	13036721	13036816	AT1TE42545	.	-	TNAT1A	.	DNA	95	tiny	162	medium	1474906	pericentromeric	684	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	13036816	13037383	AT1TE42550	.	-	TNAT1A	.	DNA	567	short	162	medium	1474339	pericentromeric	779	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13038846	13039176	AT1TE42555	.	-	ATMUNX1	MuDR	DNA	330	short	155	medium	1472546	pericentromeric	915	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	13039449	13039584	AT1TE42560	.	-	RathE1_cons	.	RathE1_cons	135	short	213	high	1472138	pericentromeric	507	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	13043646	13043910	AT1TE42570	.	-	ATREP10D	Helitron	RC	264	short	1295	high	1467812	pericentromeric	17	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13043910	13045178	AT1TE42575	.	-	ATREP11	Helitron	RC	1268	short	841	high	1466544	pericentromeric	281	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	13046059	13046372	AT1TE42580	.	+	BRODYAGA1A	MuDR	DNA	313	short	586	high	1465350	pericentromeric	2430	no-CHH	no-CHH	.	.	.	.	.
Chr1	13046545	13046785	AT1TE42585	.	-	ATDNA2T9A	MuDR	DNA	240	short	48	low	1464937	pericentromeric	2378	no-CHH	no-CHH	.	.	.	.	.
Chr1	13046813	13046854	AT1TE42590	.	+	ATCOPIA8B	Copia	LTR	41	tiny	8	low	1464868	pericentromeric	2309	no-CHH	no-CHH	.	.	.	.	.
Chr1	13046854	13047855	AT1TE42595	.	+	ATCOPIA55	Copia	LTR	1001	short	9	low	1463867	pericentromeric	1308	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	13049862	13050128	AT1TE42600	.	+	ATMUNX1	MuDR	DNA	267	short	155	medium	1461594	pericentromeric	428	.	.	.	.	.	.	.
Chr1	13051070	13051277	AT1TE42605	.	-	ATREP5	Helitron	RC	207	short	624	high	1460445	pericentromeric	358	no-CHH	no-CHH	.	.	.	.	.
Chr1	13055502	13055567	AT1TE42615	.	-	ATHAT1	HAT	DNA	65	tiny	105	medium	1456155	pericentromeric	580	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	13055567	13056271	AT1TE42620	.	-	ATHAT1	HAT	DNA	704	short	105	medium	1455451	pericentromeric	645	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13056712	13056980	AT1TE42625	.	-	HELITRONY3	Helitron	RC	268	short	1399	high	1454742	pericentromeric	1790	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13056980	13058485	AT1TE42630	.	+	HELITRONY3	Helitron	RC	1505	short	1399	high	1453237	pericentromeric	2058	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13058485	13061316	AT1TE42635	.	+	ATREP3	Helitron	RC	2831	medium	1439	high	1450406	pericentromeric	539	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13061316	13061387	AT1TE42640	.	+	ATREP3	Helitron	RC	71	tiny	1439	high	1450335	pericentromeric	468	no-CHH	no-CHH	.	.	.	.	.
Chr1	13061387	13061426	AT1TE42645	.	+	HELITRONY1D	Helitron	RC	39	tiny	756	high	1450296	pericentromeric	429	no-CHH	no-CHH	.	.	.	.	.
Chr1	13061426	13061580	AT1TE42650	.	+	ATREP11	Helitron	RC	154	short	841	high	1450142	pericentromeric	275	no-CHH	no-CHH	.	.	.	.	.
Chr1	13063322	13063769	AT1TE42655	.	-	ATREP10D	Helitron	RC	447	short	1295	high	1447953	pericentromeric	156	no-CHH	no-CHH	.	.	.	.	.
Chr1	13063769	13065302	AT1TE42660	.	-	ATREP11	Helitron	RC	1533	short	841	high	1446420	pericentromeric	603	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13065302	13065601	AT1TE42665	.	+	ATREP15	Helitron	RC	299	short	1003	high	1446121	pericentromeric	485	PolIV-and-RDR6-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	13067783	13068628	AT1TE42670	.	+	ATLINE1A	L1	LINE	845	short	289	high	1443094	pericentromeric	1187	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13069714	13069749	AT1TE42675	.	+	ATREP5	Helitron	RC	35	tiny	624	high	1441973	pericentromeric	1736	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13069749	13070698	AT1TE42680	.	-	HELITRONY1A	Helitron	RC	949	short	271	high	1441024	pericentromeric	787	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13070698	13070718	AT1TE42685	.	+	ATREP3	Helitron	RC	20	tiny	1439	high	1441004	pericentromeric	767	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13075491	13075526	AT1TE42695	.	+	HELITRONY1D	Helitron	RC	35	tiny	756	high	1436196	pericentromeric	816	no-CHH	no-CHH	.	.	.	.	.
Chr1	13075526	13076517	AT1TE42700	.	-	ATREP15	Helitron	RC	991	short	1003	high	1435205	pericentromeric	851	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13077561	13077761	AT1TE42705	.	+	ATIS112A	Harbinger	DNA	200	short	173	medium	1433961	pericentromeric	164	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	13080416	13081023	AT1TE42710	.	+	ATREP11A	Helitron	RC	607	short	95	medium	1430699	pericentromeric	151	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	13081023	13081057	AT1TE42715	.	+	ATREP11A	Helitron	RC	34	tiny	95	medium	1430665	pericentromeric	758	no-RdDM	no-CHH	.	.	.	.	.
Chr1	13081057	13081089	AT1TE42720	.	+	ATREP11	Helitron	RC	32	tiny	841	high	1430633	pericentromeric	792	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	13081893	13082094	AT1TE42725	.	+	ATLINE1_2	L1	LINE	201	short	41	low	1429628	pericentromeric	724	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	13085454	13085593	AT1TE42735	.	+	ATCOPIA68	Copia	LTR	139	short	43	low	1426129	pericentromeric	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13085930	13086385	AT1TE42740	.	-	BRODYAGA1A	MuDR	DNA	455	short	586	high	1425337	pericentromeric	100	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13086747	13087311	AT1TE42745	.	-	ATREP3	Helitron	RC	564	short	1439	high	1424411	pericentromeric	917	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13087384	13088087	AT1TE42750	.	+	SIMPLEHAT2	HAT	DNA	703	short	73	medium	1423635	pericentromeric	1554	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13088089	13089696	AT1TE42755	.	+	HELITRONY3	Helitron	RC	1607	short	1399	high	1422026	pericentromeric	297	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13089696	13089743	AT1TE42760	.	-	ATREP15	Helitron	RC	47	tiny	1003	high	1421979	pericentromeric	250	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	13089743	13089824	AT1TE42765	.	-	ARNOLDY2	MuDR	DNA	81	tiny	288	high	1421898	pericentromeric	169	no-CHH	no-CHH	.	.	.	.	.
Chr1	13097248	13097396	AT1TE42780	.	+	ATHPOGON1	Pogo	DNA	148	short	174	medium	1414326	pericentromeric	170	no-CHH	no-CHH	.	.	.	.	.
Chr1	13097396	13097431	AT1TE42785	.	+	ATHPOGON2	Pogo	DNA	35	tiny	27	low	1414291	pericentromeric	318	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	13097431	13098188	AT1TE42790	.	+	ATHPOGON2	Pogo	DNA	757	short	27	low	1413534	pericentromeric	353	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13098188	13098241	AT1TE42795	.	+	ATREP19	.	DNA	53	tiny	189	medium	1413481	pericentromeric	1110	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13098280	13102834	AT1TE42800	.	+	ATCOPIA69	Copia	LTR	4554	medium	25	low	1408888	pericentromeric	1202	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	13103591	13103612	AT1TE42805	.	+	HELITRONY3	Helitron	RC	21	tiny	1399	high	1408110	pericentromeric	1593	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13103612	13104210	AT1TE42810	.	+	ATREP1	Helitron	RC	598	short	498	high	1407512	pericentromeric	995	no-RdDM	no-CHH	.	.	.	.	.
Chr1	13105719	13105842	AT1TE42815	.	+	ATREP4	Helitron	RC	123	short	832	high	1405880	pericentromeric	149	no-CHH	no-CHH	.	.	.	.	.
Chr1	13107033	13107599	AT1TE42820	.	-	HELITRONY3	Helitron	RC	566	short	1399	high	1404123	pericentromeric	1034	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	13108840	13109040	AT1TE42825	.	+	VANDAL17	MuDR	DNA	200	short	178	medium	1402682	pericentromeric	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13114226	13114833	AT1TE42835	.	-	BOMZH1	MuDR	DNA	607	short	28	low	1396889	pericentromeric	1190	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	13114834	13115375	AT1TE42840	.	-	BRODYAGA1	MuDR	DNA	541	short	251	high	1396347	pericentromeric	723	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13119392	13120283	AT1TE42850	.	-	ATLINEIII	L1	LINE	891	short	196	medium	1391439	pericentromeric	2176	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	13121286	13121425	AT1TE42855	.	-	ATCOPIA71	Copia	LTR	139	short	9	low	1390297	pericentromeric	1034	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	13121472	13121558	AT1TE42860	.	+	ATLINE1_3A	L1	LINE	87	tiny	160	medium	1390164	pericentromeric	901	.	.	.	.	.	.	.
Chr1	13121565	13122033	AT1TE42865	.	-	ATCOPIA71	Copia	LTR	468	short	9	low	1389689	pericentromeric	426	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	13127112	13128014	AT1TE42875	.	-	ATSINE2A	.	SINE	902	short	33	low	1383708	pericentromeric	2304	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	13128071	13129685	AT1TE42880	.	+	ATREP15	Helitron	RC	1614	short	1003	high	1382037	pericentromeric	3263	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	13129685	13129768	AT1TE42885	.	-	BRODYAGA2	MuDR	DNA	83	tiny	525	high	1381954	pericentromeric	4877	no-CHH	DCL3-RdDM	.	.	.	.	.
Chr1	13131404	13140006	AT1TE42890	.	+	ATENSPM5	En-Spm	DNA	8602	long	111	medium	1371716	pericentromeric	3143	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	13134393,13134588,13134913,13135167,13135351,13136268	13135887,13135937,13135519,13135906,13135937,13139370	+,+,+,+,+,+	transcript_id-"4d3c0aa7-18bf-4ed6-9535-cfb30c3fcdf8|3",transcript_id-"970e67b2-f8cb-469c-b8fe-bfb115c3c6e2|4",transcript_id-"fcf76f96-804f-40a7-b215-11b673661b47|4",transcript_id-"14f10a99-4667-483f-85b8-1bd254c947e4|18",transcript_id-"ab0a153b-fcde-4035-9b2d-67196784a23c|7",transcript_id-"f6713e28-9091-415c-9776-82f9159b9052|83"
Chr1	13145949	13146519	AT1TE42900	.	-	VANDAL12	MuDR	DNA	570	short	37	low	1365203	pericentromeric	961	no-CHH	no-CHH	ExpressedAndAnnotated	13145643,13145645,13145736	13146693,13146778,13146807	+,+,+	transcript_id-"bc185315-02d9-472d-8052-b61887ca272c|7",transcript_id-"9bf314de-5f4f-4755-9c4a-cdf6bffda895|17",transcript_id-"7338cd14-2625-499a-9209-6c8fee22f39c|5"
Chr1	13146519	13146556	AT1TE42905	.	-	VANDAL12	MuDR	DNA	37	tiny	37	low	1365166	pericentromeric	1531	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	13148195	13148295	AT1TE42910	.	+	ATDNA12T3_2	.	DNA	100	short	660	high	1363427	pericentromeric	296	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	13149787	13150516	AT1TE42915	.	+	ATDNA12T3_2	.	DNA	729	short	660	high	1361206	pericentromeric	228	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	13150516	13151142	AT1TE42920	.	+	BRODYAGA1	MuDR	DNA	626	short	251	high	1360580	pericentromeric	957	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13151142	13151476	AT1TE42925	.	-	ATMU10	MuDR	DNA	334	short	87	medium	1360246	pericentromeric	1583	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13151879	13152923	AT1TE42930	.	-	SIMPLEHAT1	HAT	DNA	1044	short	56	medium	1358799	pericentromeric	659	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13155541	13156291	AT1TE42935	.	+	ATREP10	Helitron	RC	750	short	63	medium	1355431	pericentromeric	212	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	13160255	13161425	AT1TE42945	.	-	HELITRONY3	Helitron	RC	1170	short	1399	high	1350297	pericentromeric	995	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	13161425	13162868	AT1TE42950	.	-	ATREP4	Helitron	RC	1443	short	832	high	1348854	pericentromeric	172	no-CHH	no-CHH	.	.	.	.	.
Chr1	13162868	13162938	AT1TE42955	.	+	ATREP10D	Helitron	RC	70	tiny	1295	high	1348784	pericentromeric	102	no-CHH	no-CHH	.	.	.	.	.
Chr1	13164624	13164661	AT1TE42960	.	-	ATREP10D	Helitron	RC	37	tiny	1295	high	1347061	pericentromeric	140	no-CHH	no-CHH	.	.	.	.	.
Chr1	13164661	13165419	AT1TE42965	.	+	ATHPOGON3	Pogo	DNA	758	short	118	medium	1346303	pericentromeric	177	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13165419	13166074	AT1TE42970	.	+	ATREP8	Helitron	RC	655	short	75	medium	1345648	pericentromeric	935	no-CHH	no-CHH	.	.	.	.	.
Chr1	13166074	13167303	AT1TE42975	.	-	HELITRONY3	Helitron	RC	1229	short	1399	high	1344419	pericentromeric	1590	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13171300	13171359	AT1TE42985	.	+	ATREP3	Helitron	RC	59	tiny	1439	high	1340363	pericentromeric	6816	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13171359	13171380	AT1TE42990	.	+	ATREP3	Helitron	RC	21	tiny	1439	high	1340342	pericentromeric	6875	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13171380	13172402	AT1TE42995	.	-	ATDNA2T9C	MuDR	DNA	1022	short	242	high	1339320	pericentromeric	6896	no-CHH	no-CHH	.	.	.	.	.
Chr1	13172403	13172490	AT1TE43000	.	+	ATREP3	Helitron	RC	87	tiny	1439	high	1339232	pericentromeric	7919	no-CHH	no-CHH	.	.	.	.	.
Chr1	13172846	13172925	AT1TE43005	.	+	VANDAL13	MuDR	DNA	79	tiny	38	low	1338797	pericentromeric	8362	no-CHH	no-CHH	.	.	.	.	.
Chr1	13172925	13178593	AT1TE43010	.	+	VANDAL14	MuDR	DNA	5668	long	25	low	1333129	pericentromeric	8441	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	13178745	13178815	AT1TE43015	.	-	ATLANTYS3	Gypsy	LTR	70	tiny	142	medium	1332907	pericentromeric	13927	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	13178815	13179468	AT1TE43020	.	-	ATLANTYS2	Gypsy	LTR	653	short	179	medium	1332254	pericentromeric	13274	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	13179468	13180611	AT1TE43025	.	+	VANDAL14	MuDR	DNA	1143	short	25	low	1331111	pericentromeric	12131	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	13180945	13181769	AT1TE43030	.	-	ATGP7	Gypsy	LTR	824	short	47	low	1329953	pericentromeric	10973	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	13181769	13181895	AT1TE43035	.	-	ATGP7	Gypsy	LTR	126	short	47	low	1329827	pericentromeric	10847	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	13181964	13186591	AT1TE43040	.	-	ATGP7	Gypsy	LTR	4627	medium	47	low	1325131	pericentromeric	6151	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13186846	13187018	AT1TE43045	.	+	ATGP7	Gypsy	LTR	172	short	47	low	1324704	pericentromeric	5724	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13187277	13192359	AT1TE43050	.	+	VANDAL14	MuDR	DNA	5082	long	25	low	1319363	pericentromeric	383	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	13192870	13193025	AT1TE43055	.	-	VANDAL6	MuDR	DNA	155	short	89	medium	1318697	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	13193025	13193066	AT1TE43060	.	+	ARNOLD2	MuDR	DNA	41	tiny	68	medium	1318656	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	13198032	13198946	AT1TE43070	.	-	ATREP4	Helitron	RC	914	short	832	high	1312776	pericentromeric	377	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr1	13198946	13199004	AT1TE43075	.	-	ATREP4	Helitron	RC	58	tiny	832	high	1312718	pericentromeric	1291	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	13199077	13199696	AT1TE43080	.	-	HARBINGER	Harbinger	DNA	619	short	90	medium	1312026	pericentromeric	1422	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	13199828	13201184	AT1TE43085	.	+	HELITRONY1D	Helitron	RC	1356	short	756	high	1310538	pericentromeric	2173	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	13201184	13201242	AT1TE43090	.	-	HELITRONY1E	Helitron	RC	58	tiny	447	high	1310480	pericentromeric	3529	no-RdDM	no-CHH	.	.	.	.	.
Chr1	13202240	13202308	AT1TE43095	.	-	BRODYAGA1	MuDR	DNA	68	tiny	251	high	1309414	pericentromeric	3147	no-CHH	no-CHH	.	.	.	.	.
Chr1	13202308	13203265	AT1TE43100	.	-	ATREP10D	Helitron	RC	957	short	1295	high	1308457	pericentromeric	2190	no-CHH	no-CHH	.	.	.	.	.
Chr1	13203749	13203798	AT1TE43105	.	+	HELITRONY3	Helitron	RC	49	tiny	1399	high	1307924	pericentromeric	1657	no-CHH	no-CHH	.	.	.	.	.
Chr1	13203798	13203821	AT1TE43110	.	-	HELITRONY3	Helitron	RC	23	tiny	1399	high	1307901	pericentromeric	1634	no-CHH	no-CHH	.	.	.	.	.
Chr1	13203821	13205367	AT1TE43115	.	-	HELITRONY3	Helitron	RC	1546	short	1399	high	1306355	pericentromeric	88	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	13205857	13206348	AT1TE43120	.	+	ATENSPM2	En-Spm	DNA	491	short	114	medium	1305374	pericentromeric	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	13210828	13210897	AT1TE43130	.	-	ATREP11	Helitron	RC	69	tiny	841	high	1300825	pericentromeric	582	no-CHH	no-CHH	.	.	.	.	.
Chr1	13210897	13211332	AT1TE43135	.	+	ATREP10A	Helitron	RC	435	short	279	high	1300390	pericentromeric	651	no-CHH	no-CHH	.	.	.	.	.
Chr1	13211332	13211945	AT1TE43140	.	-	HELITRONY1C	Helitron	RC	613	short	120	medium	1299777	pericentromeric	1086	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	13211945	13213580	AT1TE43145	.	+	ATREP3	Helitron	RC	1635	short	1439	high	1298142	pericentromeric	1699	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	13213064	13212244	-	transcript_id-"ac13b990-e09c-4bdc-a81a-2ab9653e20bf|3"
Chr1	13213580	13214177	AT1TE43150	.	-	HELITRONY1C	Helitron	RC	597	short	120	medium	1297545	pericentromeric	3334	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	13214129	13215116	AT1TE43155	.	+	Unassigned	.	Unassigned	987	short	.	low	1296606	pericentromeric	3883	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	13214194	13214249	AT1TE43160	.	-	ATREP10B	Helitron	RC	55	tiny	491	high	1297473	pericentromeric	3948	no-CHH	no-CHH	.	.	.	.	.
Chr1	13214777	13214886	AT1TE43165	.	+	HELITRONY1C	Helitron	RC	109	short	120	medium	1296836	pericentromeric	4531	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	13215104	13216190	AT1TE43170	.	+	ATREP8	Helitron	RC	1086	short	75	medium	1295532	pericentromeric	4749	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	13216190	13216230	AT1TE43175	.	-	META1	Copia	LTR	40	tiny	138	medium	1295492	pericentromeric	4709	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13217274	13218121	AT1TE43180	.	-	ATREP4	Helitron	RC	847	short	832	high	1293601	pericentromeric	2818	no-CHH	no-CHH	.	.	.	.	.
Chr1	13219979	13220029	AT1TE43185	.	-	HELITRONY1D	Helitron	RC	50	tiny	756	high	1291693	pericentromeric	910	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13220037	13220432	AT1TE43190	.	+	ATREP15	Helitron	RC	395	short	1003	high	1291290	pericentromeric	507	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13220433	13220665	AT1TE43195	.	-	HELITRONY1D	Helitron	RC	233	short	756	high	1291057	pericentromeric	274	.	.	LowExpressed	.	.	.	.
Chr1	13230841	13230992	AT1TE43220	.	-	META1	Copia	LTR	151	short	138	medium	1280730	pericentromeric	1045	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	13230992	13235723	AT1TE43225	.	-	ROMANIAT5	Copia	LTR	4731	medium	49	low	1275999	pericentromeric	1196	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	13236049,13236047	13234545,13235053	-,-	transcript_id-"a0304167-a267-411f-8dac-0c803b1b2978|10",transcript_id-"7c49a350-5ae2-41a9-a615-00181a5b9df2|3"
Chr1	13236248	13236549	AT1TE43230	.	-	ATREP15	Helitron	RC	301	short	1003	high	1275173	pericentromeric	6452	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	13236550	13236641	AT1TE43235	.	+	ATREP10B	Helitron	RC	92	tiny	491	high	1275081	pericentromeric	6753	.	.	.	.	.	.	.
Chr1	13236641	13237476	AT1TE43240	.	-	HELITRONY1D	Helitron	RC	835	short	756	high	1274246	pericentromeric	6845	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13237481	13237795	AT1TE43245	.	+	VANDAL2N1	MuDR	DNA	314	short	51	medium	1273927	pericentromeric	7685	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13238145	13239070	AT1TE43250	.	-	VANDAL2N1	MuDR	DNA	925	short	51	medium	1272652	pericentromeric	8349	no-RdDM	no-CHH	.	.	.	.	.
Chr1	13238342	13238467	AT1TE43255	.	-	VANDAL2	MuDR	DNA	125	short	43	low	1273255	pericentromeric	8546	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	13238476	13238593	AT1TE43260	.	-	VANDAL1N1	MuDR	DNA	118	short	52	medium	1273129	pericentromeric	8679	.	.	.	.	.	.	.
Chr1	13240218	13240424	AT1TE43265	.	-	ATENSPM7	En-Spm	DNA	206	short	74	medium	1271298	pericentromeric	10422	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13240525	13240641	AT1TE43270	.	-	VANDAL1N1	MuDR	DNA	116	short	52	medium	1271081	pericentromeric	10729	no-RdDM	no-CHH	.	.	.	.	.
Chr1	13240745	13241300	AT1TE43275	.	-	HELITRONY3	Helitron	RC	555	short	1399	high	1270422	pericentromeric	10949	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13241300	13241322	AT1TE43280	.	-	ARNOLDY1	MuDR	DNA	22	tiny	237	high	1270400	pericentromeric	11504	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13245079	13245269	AT1TE43290	.	+	ATREP10D	Helitron	RC	190	short	1295	high	1266453	pericentromeric	8128	no-CHH	no-CHH	.	.	.	.	.
Chr1	13245269	13247416	AT1TE43295	.	+	ATREP4	Helitron	RC	2147	medium	832	high	1264306	pericentromeric	5981	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	13247416	13247451	AT1TE43300	.	+	ATREP10B	Helitron	RC	35	tiny	491	high	1264271	pericentromeric	5946	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	13247657	13250347	AT1TE43305	.	-	ATHAT10	HAT	DNA	2690	medium	35	low	1261375	pericentromeric	3050	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	13250347	13250446	AT1TE43310	.	-	ATHAT10	HAT	DNA	99	tiny	35	low	1261276	pericentromeric	2951	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13251865	13253034	AT1TE43315	.	-	ATREP10D	Helitron	RC	1169	short	1295	high	1258688	pericentromeric	363	no-CHH	no-CHH	.	.	.	.	.
Chr1	13255904	13256863	AT1TE43320	.	+	ATREP10D	Helitron	RC	959	short	1295	high	1254859	pericentromeric	334	no-CHH	no-CHH	.	.	.	.	.
Chr1	13256863	13257271	AT1TE43325	.	-	ATLINE1A	L1	LINE	408	short	289	high	1254451	pericentromeric	1293	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13257582	13258583	AT1TE43330	.	+	ATREP9	Helitron	RC	1001	short	201	high	1253139	pericentromeric	2012	no-CHH	no-CHH	.	.	.	.	.
Chr1	13259026	13259196	AT1TE43335	.	+	VANDAL20	MuDR	DNA	170	short	51	medium	1252526	pericentromeric	3456	no-CHH	no-CHH	.	.	.	.	.
Chr1	13260165	13260813	AT1TE43340	.	-	ATREP10D	Helitron	RC	648	short	1295	high	1250909	pericentromeric	4595	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13260813	13260951	AT1TE43345	.	-	HELITRONY3	Helitron	RC	138	short	1399	high	1250771	pericentromeric	5243	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13260951	13263559	AT1TE43350	.	-	ATREP3	Helitron	RC	2608	medium	1439	high	1248163	pericentromeric	5381	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13263762	13276157	AT1TE43355	.	+	VANDAL9	MuDR	DNA	12395	long	43	low	1235565	pericentromeric	1620	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	13278778	13279032	AT1TE43360	.	+	ATMU2	MuDR	DNA	254	short	64	medium	1232690	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	13283528	13283704	AT1TE43370	.	+	VANDAL14	MuDR	DNA	176	short	25	low	1228018	pericentromeric	3415	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13284487	13284694	AT1TE43375	.	+	VANDAL13	MuDR	DNA	207	short	38	low	1227028	pericentromeric	4374	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13285260	13285891	AT1TE43380	.	+	VANDAL13	MuDR	DNA	631	short	38	low	1225831	pericentromeric	5147	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	13285398	13285420	AT1TE43385	.	+	VANDAL13	MuDR	DNA	22	tiny	38	low	1226302	pericentromeric	5285	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	13291048	13291373	AT1TE43395	.	+	ATCOPIA28	Copia	LTR	325	short	81	medium	1220349	pericentromeric	10935	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	13291504	13291813	AT1TE43400	.	+	ROMANIAT5	Copia	LTR	309	short	49	low	1219909	pericentromeric	11391	no-RdDM	no-CHH	.	.	.	.	.
Chr1	13292186	13292284	AT1TE43405	.	+	META1	Copia	LTR	98	tiny	138	medium	1219438	pericentromeric	12073	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	13292350	13292802	AT1TE43410	.	+	ATCOPIA29	Copia	LTR	452	short	19	low	1218920	pericentromeric	12237	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13292808	13292854	AT1TE43415	.	-	ATHILA4A	Gypsy	LTR	46	tiny	310	high	1218868	pericentromeric	12695	PolIV-and-RDR6-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	13292854	13295196	AT1TE43420	.	-	ATHILA4	Gypsy	LTR	2342	medium	250	high	1216526	pericentromeric	12741	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	13295196	13295373	AT1TE43425	.	-	ATHILA4A	Gypsy	LTR	177	short	310	high	1216349	pericentromeric	12745	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	13295391	13296927	AT1TE43430	.	-	ATHILA4	Gypsy	LTR	1536	short	250	high	1214795	pericentromeric	11191	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	13297270	13297356	AT1TE43435	.	+	ATGP8	Gypsy	LTR	86	tiny	92	medium	1214366	pericentromeric	10762	DCL3-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13298355	13299022	AT1TE43440	.	+	ATGP8	Gypsy	LTR	667	short	92	medium	1212700	pericentromeric	9096	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	13299133	13301583	AT1TE43445	.	-	ATHILA4	Gypsy	LTR	2450	medium	250	high	1210139	pericentromeric	6535	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	13301584	13301629	AT1TE43450	.	-	ATHILA4C	Gypsy	LTR	45	tiny	206	high	1210093	pericentromeric	6489	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	13301629	13302052	AT1TE43455	.	+	ATCOPIA28	Copia	LTR	423	short	81	medium	1209670	pericentromeric	6066	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	13302505	13303122	AT1TE43460	.	+	ROMANIAT5	Copia	LTR	617	short	49	low	1208600	pericentromeric	4996	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	13302799	13302828	AT1TE43465	.	+	ROMANIAT5	Copia	LTR	29	tiny	49	low	1208894	pericentromeric	5290	no-RdDM	no-CHH	.	.	.	.	.
Chr1	13303122	13303377	AT1TE43470	.	+	META1	Copia	LTR	255	short	138	medium	1208345	pericentromeric	4741	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13303377	13303489	AT1TE43475	.	+	META1	Copia	LTR	112	short	138	medium	1208233	pericentromeric	4629	no-CHH	no-CHH	.	.	.	.	.
Chr1	13304426	13304737	AT1TE43480	.	+	ATCOPIA28	Copia	LTR	311	short	81	medium	1206985	pericentromeric	3381	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	13305090	13305193	AT1TE43485	.	+	META1	Copia	LTR	103	short	138	medium	1206529	pericentromeric	2925	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	13305227	13305432	AT1TE43490	.	+	ATCOPIA29	Copia	LTR	205	short	19	low	1206290	pericentromeric	2686	no-CHH	no-CHH	.	.	.	.	.
Chr1	13305432	13305993	AT1TE43495	.	-	ATREP15	Helitron	RC	561	short	1003	high	1205729	pericentromeric	2125	no-RdDM	no-CHH	.	.	.	.	.
Chr1	13310768	13311277	AT1TE43505	.	+	ATCOPIA29	Copia	LTR	509	short	19	low	1200445	pericentromeric	1511	no-RdDM	no-CHH	.	.	.	.	.
Chr1	13311596	13312488	AT1TE43510	.	+	ROMANIAT5	Copia	LTR	892	short	49	low	1199234	pericentromeric	2339	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	13312488	13312586	AT1TE43515	.	+	META1	Copia	LTR	98	tiny	138	medium	1199136	pericentromeric	3231	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	13313318	13313363	AT1TE43520	.	+	HELITRONY3	Helitron	RC	45	tiny	1399	high	1198359	pericentromeric	4061	no-CHH	no-RdDM	.	.	.	.	.
Chr1	13313363	13313433	AT1TE43525	.	-	ATREP4	Helitron	RC	70	tiny	832	high	1198289	pericentromeric	4106	no-CHH	no-CHH	.	.	.	.	.
Chr1	13313433	13314041	AT1TE43530	.	-	ATREP2	Helitron	RC	608	short	164	medium	1197681	pericentromeric	4176	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	13314041	13314155	AT1TE43535	.	-	ATREP11A	Helitron	RC	114	short	95	medium	1197567	pericentromeric	4784	no-CHH	no-CHH	.	.	.	.	.
Chr1	13314492	13314537	AT1TE43540	.	+	ATDNAI26T9	MuDR	DNA	45	tiny	25	low	1197185	pericentromeric	5235	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13316392	13316808	AT1TE43545	.	-	ATCOPIA44	Copia	LTR	416	short	12	low	1194914	pericentromeric	4405	no-CHH	no-CHH	.	.	.	.	.
Chr1	13316890	13316917	AT1TE43550	.	-	HELITRONY1D	Helitron	RC	27	tiny	756	high	1194805	pericentromeric	4296	no-CHH	no-CHH	.	.	.	.	.
Chr1	13316917	13317276	AT1TE43555	.	-	BRODYAGA1A	MuDR	DNA	359	short	586	high	1194446	pericentromeric	3937	no-CHH	no-CHH	.	.	.	.	.
Chr1	13322435	13323485	AT1TE43565	.	+	ATREP3	Helitron	RC	1050	short	1439	high	1188237	pericentromeric	313	no-CHH	no-CHH	.	.	.	.	.
Chr1	13323485	13323637	AT1TE43570	.	-	HELITRONY3	Helitron	RC	152	short	1399	high	1188085	pericentromeric	1363	no-CHH	no-CHH	.	.	.	.	.
Chr1	13323877	13323939	AT1TE43575	.	+	ATMU6	MuDR	DNA	62	tiny	26	low	1187783	pericentromeric	1755	no-CHH	no-CHH	.	.	.	.	.
Chr1	13323939	13324230	AT1TE43580	.	+	ATMU6	MuDR	DNA	291	short	26	low	1187492	pericentromeric	1817	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13324757	13329639	AT1TE43585	.	+	ATCOPIA84	Copia	LTR	4882	medium	10	low	1182083	pericentromeric	870	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	13336685	13336749	AT1TE43600	.	+	ATGP3	Gypsy	LTR	64	tiny	60	medium	1174973	pericentromeric	2635	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	13336749	13339482	AT1TE43605	.	+	ATGP3	Gypsy	LTR	2733	medium	60	medium	1172240	pericentromeric	368	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	13342235	13342475	AT1TE43610	.	-	VANDAL3	MuDR	DNA	240	short	177	medium	1169247	pericentromeric	282	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	13342810	13343440	AT1TE43615	.	-	ATHATN10	HAT	DNA	630	short	48	low	1168282	pericentromeric	857	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13344755	13344795	AT1TE43620	.	-	ATREP11	Helitron	RC	40	tiny	841	high	1166927	pericentromeric	2708	no-CHH	no-CHH	.	.	.	.	.
Chr1	13344795	13345032	AT1TE43625	.	-	HELITRONY1D	Helitron	RC	237	short	756	high	1166690	pericentromeric	2471	no-CHH	no-CHH	.	.	.	.	.
Chr1	13345032	13345720	AT1TE43630	.	-	ATREP5	Helitron	RC	688	short	624	high	1166002	pericentromeric	1783	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	13345720	13347477	AT1TE43635	.	-	HELITRONY1D	Helitron	RC	1757	short	756	high	1164245	pericentromeric	26	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	13347744	13349384	AT1TE43640	.	+	ATHILA8A	Gypsy	LTR	1640	short	97	medium	1162338	pericentromeric	0	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	13349385	13349779	AT1TE43645	.	-	ATLINE1A	L1	LINE	394	short	289	high	1161943	pericentromeric	952	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13351630	13351770	AT1TE43650	.	-	ATLINEIII	L1	LINE	140	short	196	medium	1159952	pericentromeric	3197	no-CHH	no-CHH	.	.	.	.	.
Chr1	13351817	13352148	AT1TE43655	.	+	ATLINE1_3A	L1	LINE	331	short	160	medium	1159574	pericentromeric	3384	no-CHH	no-CHH	.	.	.	.	.
Chr1	13352695	13353001	AT1TE43660	.	-	DT1	Mariner	DNA	306	short	123	medium	1158721	pericentromeric	4262	no-CHH	no-CHH	.	.	.	.	.
Chr1	13353002	13353175	AT1TE43665	.	-	ATREP5	Helitron	RC	173	short	624	high	1158547	pericentromeric	4569	no-CHH	RDR6-RdDM	.	.	.	.	.
Chr1	13353935	13355092	AT1TE43670	.	-	HELITRONY3	Helitron	RC	1157	short	1399	high	1156630	pericentromeric	5502	no-CHH	no-CHH	.	.	.	.	.
Chr1	13355092	13355234	AT1TE43675	.	+	ATREP10D	Helitron	RC	142	short	1295	high	1156488	pericentromeric	6659	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13355241	13355610	AT1TE43680	.	+	ATDNA12T3_2	.	DNA	369	short	660	high	1156112	pericentromeric	6808	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13355832	13355890	AT1TE43685	.	-	ATREP9	Helitron	RC	58	tiny	201	high	1155832	pericentromeric	7309	no-CHH	no-CHH	.	.	.	.	.
Chr1	13355890	13357161	AT1TE43690	.	+	ATREP13	Helitron	RC	1271	short	106	medium	1154561	pericentromeric	6038	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13357162	13357312	AT1TE43695	.	-	ATREP3	Helitron	RC	151	short	1439	high	1154410	pericentromeric	5887	.	.	.	.	.	.	.
Chr1	13360591	13361126	AT1TE43705	.	-	ATHATN3	HAT	DNA	535	short	70	medium	1150596	pericentromeric	2073	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13361126	13361165	AT1TE43710	.	+	ATREP10A	Helitron	RC	39	tiny	279	high	1150557	pericentromeric	2034	no-CHH	no-CHH	.	.	.	.	.
Chr1	13362163	13362482	AT1TE43715	.	-	ATMUNX1	MuDR	DNA	319	short	155	medium	1149240	pericentromeric	717	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	13365140	13365668	AT1TE43720	.	+	ATREP10D	Helitron	RC	528	short	1295	high	1146054	pericentromeric	175	no-CHH	no-CHH	.	.	.	.	.
Chr1	13365668	13366757	AT1TE43725	.	-	ATREP10C	Helitron	RC	1089	short	123	medium	1144965	pericentromeric	703	no-CHH	no-CHH	.	.	.	.	.
Chr1	13368516	13369371	AT1TE43730	.	-	ATREP15	Helitron	RC	855	short	1003	high	1142351	pericentromeric	3551	no-CHH	no-CHH	.	.	.	.	.
Chr1	13370451	13371457	AT1TE43735	.	+	ATREP10D	Helitron	RC	1006	short	1295	high	1140265	pericentromeric	5486	no-CHH	no-CHH	.	.	.	.	.
Chr1	13371474	13386480	AT1TE43740	.	+	HELITRON1	Helitron	RC	15006	long	130	medium	1125242	pericentromeric	6509	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	13377223	13377246	AT1TE43745	.	+	HELITRONY2	Helitron	RC	23	tiny	198	medium	1134476	pericentromeric	12258	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	13387201	13388018	AT1TE43770	.	+	ATREP11	Helitron	RC	817	short	841	high	1123704	pericentromeric	22236	no-RdDM	no-CHH	.	.	.	.	.
Chr1	13388503	13389976	AT1TE43775	.	+	ATREP3	Helitron	RC	1473	short	1439	high	1121746	pericentromeric	23538	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13392125	13393945	AT1TE43780	.	-	TA11	L1	LINE	1820	short	157	medium	1117777	pericentromeric	27160	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	13393945	13393969	AT1TE43785	.	-	ATLINE1_4	L1	LINE	24	tiny	102	medium	1117753	pericentromeric	28597	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13394347	13394649	AT1TE43790	.	-	ATLINE1_6	L1	LINE	302	short	129	medium	1117073	pericentromeric	27917	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	13396398	13397204	AT1TE43795	.	+	BRODYAGA2	MuDR	DNA	806	short	525	high	1114518	pericentromeric	25362	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13397403	13397539	AT1TE43800	.	+	ATHILA4D_LTR	Gypsy	LTR	136	short	106	medium	1114183	pericentromeric	25027	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	13397539	13400776	AT1TE43805	.	+	ATHILA4	Gypsy	LTR	3237	medium	250	high	1110946	pericentromeric	21790	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	13400776	13401576	AT1TE43810	.	+	ATHILA4A	Gypsy	LTR	800	short	310	high	1110146	pericentromeric	20990	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr1	13401576	13401675	AT1TE43815	.	+	ATHILA4B_LTR	Gypsy	LTR	99	tiny	143	medium	1110047	pericentromeric	20891	RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13401675	13402670	AT1TE43820	.	+	ATHILA4	Gypsy	LTR	995	short	250	high	1109052	pericentromeric	19896	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	13402807	13403182	AT1TE43825	.	+	HELITRONY1D	Helitron	RC	375	short	756	high	1108540	pericentromeric	19384	no-CHH	no-CHH	.	.	.	.	.
Chr1	13404114	13404839	AT1TE43830	.	-	BRODYAGA2	MuDR	DNA	725	short	525	high	1106883	pericentromeric	17727	no-CHH	no-CHH	.	.	.	.	.
Chr1	13404839	13404992	AT1TE43835	.	+	ATREP9	Helitron	RC	153	short	201	high	1106730	pericentromeric	17574	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13407425	13407451	AT1TE43840	.	+	ATREP10A	Helitron	RC	26	tiny	279	high	1104271	pericentromeric	15115	no-RdDM	no-CHH	.	.	.	.	.
Chr1	13407452	13409316	AT1TE43845	.	+	ATREP10B	Helitron	RC	1864	short	491	high	1102406	pericentromeric	13250	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13409316	13409339	AT1TE43850	.	+	ATREP10B	Helitron	RC	23	tiny	491	high	1102383	pericentromeric	13227	no-CHH	RDR6-RdDM	.	.	.	.	.
Chr1	13409339	13409421	AT1TE43855	.	-	VANDAL8	MuDR	DNA	82	tiny	123	medium	1102301	pericentromeric	13145	no-CHH	no-CHH	.	.	.	.	.
Chr1	13410325	13410458	AT1TE43860	.	-	TA11	L1	LINE	133	short	157	medium	1101264	pericentromeric	12108	no-RdDM	no-CHH	.	.	.	.	.
Chr1	13410458	13415145	AT1TE43865	.	-	TA11	L1	LINE	4687	medium	157	medium	1096577	pericentromeric	7421	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	13415374	13415485	AT1TE43870	.	+	ATHAT1	HAT	DNA	111	short	105	medium	1096237	pericentromeric	7081	no-RdDM	no-CHH	.	.	.	.	.
Chr1	13417636	13417657	AT1TE43875	.	+	ATMU11	MuDR	DNA	21	tiny	20	low	1094065	pericentromeric	4909	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	13417657	13421489	AT1TE43880	.	-	ATMU11	MuDR	DNA	3832	medium	20	low	1090233	pericentromeric	1077	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	13421125	13418449	-	transcript_id-"db229489-872f-4a96-b383-84c4876add0b|5"
Chr1	13421489	13421694	AT1TE43885	.	-	ATREP5	Helitron	RC	205	short	624	high	1090028	pericentromeric	872	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13421803	13421949	AT1TE43890	.	-	VANDAL18NA	MuDR	DNA	146	short	24	low	1089773	pericentromeric	617	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13423017	13423389	AT1TE43895	.	+	BRODYAGA1A	MuDR	DNA	372	short	586	high	1088333	pericentromeric	0	no-RdDM	no-CHH	.	.	.	.	.
Chr1	13423402	13424407	AT1TE43900	.	-	ATREP10D	Helitron	RC	1005	short	1295	high	1087315	pericentromeric	379	no-RdDM	no-CHH	.	.	.	.	.
Chr1	13425712	13426005	AT1TE43905	.	+	HELITRONY3A	Helitron	RC	293	short	49	low	1085717	pericentromeric	2689	no-RdDM	no-CHH	.	.	.	.	.
Chr1	13426457	13430183	AT1TE43910	.	+	ATLINE1_1	L1	LINE	3726	medium	61	medium	1081539	pericentromeric	3434	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	13430809	13430974	AT1TE43915	.	-	ATDNA1T9A	MuDR	DNA	165	short	36	low	1080748	pericentromeric	2944	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	13431628	13431826	AT1TE43920	.	+	VANDAL5A	MuDR	DNA	198	short	56	medium	1079896	pericentromeric	2092	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13433002	13433333	AT1TE43925	.	+	ATDNA1T9A	MuDR	DNA	331	short	36	low	1078389	pericentromeric	585	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13433333	13433620	AT1TE43930	.	+	VANDAL5A	MuDR	DNA	287	short	56	medium	1078102	pericentromeric	298	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13433620	13433658	AT1TE43935	.	+	ATDNA1T9A	MuDR	DNA	38	tiny	36	low	1078064	pericentromeric	260	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	13434451	13434603	AT1TE43940	.	+	ATDNA1T9A	MuDR	DNA	152	short	36	low	1077119	pericentromeric	111	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	13435208	13435229	AT1TE43945	.	+	ATDNAI27T9A	MuDR	DNA	21	tiny	116	medium	1076493	pericentromeric	868	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	13435229	13435560	AT1TE43950	.	+	ATDNAI27T9A	MuDR	DNA	331	short	116	medium	1076162	pericentromeric	889	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	13437265	13437314	AT1TE43955	.	+	ARNOLD1	MuDR	DNA	50	tiny	39	low	1074408	pericentromeric	436	.	.	.	.	.	.	.
Chr1	13437314	13439349	AT1TE43960	.	+	ATREP11	Helitron	RC	2035	medium	841	high	1072373	pericentromeric	486	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13439349	13439371	AT1TE43965	.	+	ATREP4	Helitron	RC	22	tiny	832	high	1072351	pericentromeric	2521	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13439371	13439443	AT1TE43970	.	-	ATREP10B	Helitron	RC	72	tiny	491	high	1072279	pericentromeric	2543	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	13439443	13448530	AT1TE43975	.	+	ATCOPIA43	Copia	LTR	9087	long	29	low	1063192	pericentromeric	1936	no-RdDM	no-RdDM	ExpressedAndAnnotated	13446118,13446119	13447835,13448484	+,+	transcript_id-"7166dba5-456a-47ba-8936-8ee5264a80c5|6",transcript_id-"9513163b-8bef-4564-aaab-6a769ff54b8b|6"
Chr1	13449165	13449263	AT1TE43980	.	+	ATREP10A	Helitron	RC	98	tiny	279	high	1062459	pericentromeric	1203	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	13449263	13450021	AT1TE43985	.	-	SIMPLEGUY1	Harbinger	DNA	758	short	116	medium	1061701	pericentromeric	445	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13449462	13449759	AT1TE43990	.	-	SIMPLEHAT2	HAT	DNA	297	short	73	medium	1061963	pericentromeric	707	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13453496	13453646	AT1TE44000	.	+	ATHATN3A	HAT	DNA	150	short	20	low	1058076	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	13453740	13453968	AT1TE44005	.	+	ATHATN3	HAT	DNA	228	short	70	medium	1057754	pericentromeric	57	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	13456376	13456980	AT1TE44010	.	+	ATREP1	Helitron	RC	604	short	498	high	1054742	pericentromeric	714	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	13456980	13457011	AT1TE44015	.	+	ATREP4	Helitron	RC	31	tiny	832	high	1054711	pericentromeric	1318	no-CHH	no-CHH	.	.	.	.	.
Chr1	13457480	13457940	AT1TE44020	.	-	HELITRON4	Helitron	RC	460	short	199	medium	1053782	pericentromeric	1818	no-CHH	no-CHH	.	.	.	.	.
Chr1	13458207	13458371	AT1TE44025	.	+	HELITRONY1E	Helitron	RC	164	short	447	high	1053351	pericentromeric	2545	no-CHH	no-CHH	.	.	.	.	.
Chr1	13458371	13459371	AT1TE44030	.	-	ATREP15	Helitron	RC	1000	short	1003	high	1052351	pericentromeric	2709	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	13459371	13459432	AT1TE44035	.	-	ATREP1	Helitron	RC	61	tiny	498	high	1052290	pericentromeric	3709	no-CHH	no-CHH	.	.	.	.	.
Chr1	13460096	13460265	AT1TE44040	.	+	RathE1_cons	.	RathE1_cons	169	short	213	high	1051457	pericentromeric	4434	no-CHH	no-CHH	.	.	.	.	.
Chr1	13460982	13461897	AT1TE44045	.	+	HELITRONY1A	Helitron	RC	915	short	271	high	1049825	pericentromeric	5266	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	13461897	13462182	AT1TE44050	.	+	ATHATN5	HAT	DNA	285	short	42	low	1049540	pericentromeric	4981	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	13464542	13465904	AT1TE44055	.	-	ATREP10B	Helitron	RC	1362	short	491	high	1045818	pericentromeric	1259	no-CHH	no-CHH	.	.	.	.	.
Chr1	13465904	13466750	AT1TE44060	.	+	ATREP10D	Helitron	RC	846	short	1295	high	1044972	pericentromeric	413	no-CHH	no-CHH	.	.	.	.	.
Chr1	13473486	13473687	AT1TE44080	.	-	ATENSPM3	En-Spm	DNA	201	short	98	medium	1038035	pericentromeric	3100	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	13473687	13474500	AT1TE44085	.	-	HELITRONY1C	Helitron	RC	813	short	120	medium	1037222	pericentromeric	3301	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13474500	13474564	AT1TE44090	.	-	HELITRONY1D	Helitron	RC	64	tiny	756	high	1037158	pericentromeric	4114	no-CHH	no-CHH	.	.	.	.	.
Chr1	13475893	13476001	AT1TE44095	.	-	HELITRON3	Helitron	RC	108	short	53	medium	1035721	pericentromeric	5507	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	13476001	13477572	AT1TE44100	.	-	HELITRONY1D	Helitron	RC	1571	short	756	high	1034150	pericentromeric	4124	no-CHH	no-CHH	.	.	.	.	.
Chr1	13479019	13480875	AT1TE44105	.	-	HELITRON3	Helitron	RC	1856	short	53	medium	1030847	pericentromeric	821	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	13477755	13480917	+	transcript_id-"73186391-375a-4623-95f7-e03102c24e9c|3"
Chr1	13479163	13479193	AT1TE44110	.	-	ATREP4	Helitron	RC	30	tiny	832	high	1032529	pericentromeric	2503	no-CHH	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	13479193	13480165	AT1TE44115	.	-	ATREP11	Helitron	RC	972	short	841	high	1031557	pericentromeric	1531	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13480165	13480491	AT1TE44120	.	-	HELITRONY1E	Helitron	RC	326	short	447	high	1031231	pericentromeric	1205	no-RdDM	no-CHH	.	.	.	.	.
Chr1	13482747	13490426	AT1TE44125	.	-	VANDAL6	MuDR	DNA	7679	long	89	medium	1021296	pericentromeric	96	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	13483000,13486914,13486917,13490242	13485743,13485914,13486029,13487459	+,-,-,-	transcript_id-"601c5bff-ef07-452c-94bf-677f5c61694b|3",transcript_id-"81122933-0092-4480-9f6d-b1dc927188a4|3",transcript_id-"fbbc5975-bd1b-4654-8016-4ca92c8c79f0|47",transcript_id-"fbc4df07-d2b5-4acc-a06f-fea65e8c297c|7"
Chr1	13490620	13490824	AT1TE44130	.	-	ATENSPM7	En-Spm	DNA	204	short	74	medium	1020898	pericentromeric	545	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	13493208	13493350	AT1TE44135	.	+	ATDNA12T3_2	.	DNA	142	short	660	high	1018372	pericentromeric	483	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13494259	13494325	AT1TE44140	.	-	TAT1_ATH	Gypsy	LTR	66	tiny	87	medium	1017397	pericentromeric	326	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13495212	13495253	AT1TE44145	.	-	ATREP3	Helitron	RC	41	tiny	1439	high	1016469	pericentromeric	0	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	13495253	13495370	AT1TE44150	.	-	ATREP1	Helitron	RC	117	short	498	high	1016352	pericentromeric	38	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	13495370	13496086	AT1TE44155	.	-	ATREP2	Helitron	RC	716	short	164	medium	1015636	pericentromeric	155	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13496086	13496225	AT1TE44160	.	-	ATREP1	Helitron	RC	139	short	498	high	1015497	pericentromeric	871	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13496333	13496961	AT1TE44165	.	-	ATREP3	Helitron	RC	628	short	1439	high	1014761	pericentromeric	1118	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	13497532	13497563	AT1TE44170	.	-	BRODYAGA1A	MuDR	DNA	31	tiny	586	high	1014159	pericentromeric	2317	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13497563	13498532	AT1TE44175	.	-	HELITRON2	Helitron	RC	969	short	194	medium	1013190	pericentromeric	2348	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13499729	13500849	AT1TE44180	.	+	ATMU10	MuDR	DNA	1120	short	87	medium	1010873	pericentromeric	4514	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	13500849	13500891	AT1TE44185	.	+	ATMU8	MuDR	DNA	42	tiny	9	low	1010831	pericentromeric	5634	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13500958	13501073	AT1TE44190	.	+	ATENSPM11	En-Spm	DNA	115	short	47	low	1010649	pericentromeric	5743	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	13502553	13502777	AT1TE44195	.	+	ATENSPM11	En-Spm	DNA	224	short	47	low	1008945	pericentromeric	7338	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	13503766	13504265	AT1TE44200	.	-	HELITRON2	Helitron	RC	499	short	194	medium	1007457	pericentromeric	8551	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	13504265	13505061	AT1TE44205	.	-	ATCOPIA45	Copia	LTR	796	short	20	low	1006661	pericentromeric	9050	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	13505061	13505087	AT1TE44210	.	-	ATCOPIA64	Copia	LTR	26	tiny	13	low	1006635	pericentromeric	9846	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	13505093	13506749	AT1TE44215	.	-	ATCOPIA45	Copia	LTR	1656	short	20	low	1004973	pericentromeric	9878	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	13506749	13507194	AT1TE44220	.	-	HELITRON2	Helitron	RC	445	short	194	medium	1004528	pericentromeric	11534	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13507194	13507779	AT1TE44225	.	-	ATHILA4B_LTR	Gypsy	LTR	585	short	143	medium	1003943	pericentromeric	11979	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13507779	13515964	AT1TE44230	.	-	ATGP1	Gypsy	LTR	8185	long	144	medium	995758	pericentromeric	12292	no-RdDM	no-RdDM	ExpressedAndAnnotated	13510264	13509684	-	transcript_id-"66cf2d8e-3087-4ddd-b4e7-e019dceb9044|6"
Chr1	13515964	13517626	AT1TE44235	.	-	ATHILA4A	Gypsy	LTR	1662	short	310	high	994096	pericentromeric	10630	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	13517652	13517708	AT1TE44240	.	-	ATHILA4A	Gypsy	LTR	56	tiny	310	high	994014	pericentromeric	10548	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13517708	13517733	AT1TE44245	.	+	ATHILA4C	Gypsy	LTR	25	tiny	206	high	993989	pericentromeric	10523	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	13517762	13520558	AT1TE44250	.	-	ATHILA4	Gypsy	LTR	2796	medium	250	high	991164	pericentromeric	7698	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	13520558	13524125	AT1TE44255	.	-	HELITRONY2	Helitron	RC	3567	medium	198	medium	987597	pericentromeric	4131	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13524125	13524980	AT1TE44260	.	-	HELITRONY2	Helitron	RC	855	short	198	medium	986742	pericentromeric	3276	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	13525013	13527625	AT1TE44265	.	-	HELITRONY2	Helitron	RC	2612	medium	198	medium	984097	pericentromeric	631	PolIV-and-RDR6-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	13527625	13527831	AT1TE44270	.	-	HELITRON2	Helitron	RC	206	short	194	medium	983891	pericentromeric	425	no-RdDM	no-CHH	.	.	.	.	.
Chr1	13529502	13530335	AT1TE44275	.	-	ATREP11	Helitron	RC	833	short	841	high	981387	pericentromeric	32	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	13530447	13530689	AT1TE44280	.	-	ATREP15	Helitron	RC	242	short	1003	high	981033	pericentromeric	977	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	13530689	13530736	AT1TE44285	.	-	ATREP4	Helitron	RC	47	tiny	832	high	980986	pericentromeric	1219	no-CHH	no-CHH	.	.	.	.	.
Chr1	13530736	13531562	AT1TE44290	.	-	ATREP10B	Helitron	RC	826	short	491	high	980160	pericentromeric	1266	no-CHH	no-CHH	.	.	.	.	.
Chr1	13544555	13544699	AT1TE44330	.	-	VANDAL16	MuDR	DNA	145	short	42	low	967023	pericentromeric	781	.	.	.	.	.	.	.
Chr1	13545794	13545846	AT1TE44335	.	-	VANDAL16	MuDR	DNA	52	tiny	42	low	965876	pericentromeric	200	no-CHH	no-CHH	.	.	.	.	.
Chr1	13548170	13548238	AT1TE44340	.	+	ATMUNX1	MuDR	DNA	68	tiny	155	medium	963484	pericentromeric	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	13548238	13549729	AT1TE44345	.	+	HELITRONY1E	Helitron	RC	1491	short	447	high	961993	pericentromeric	0	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	13549729	13549776	AT1TE44350	.	+	HELITRONY1E	Helitron	RC	47	tiny	447	high	961946	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	13549776	13549900	AT1TE44355	.	-	ATREP1	Helitron	RC	124	short	498	high	961822	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	13559845	13564825	AT1TE44380	.	+	ATCOPIA89	Copia	LTR	4980	medium	12	low	946897	pericentromeric	1506	no-RdDM	no-RdDM	ExpressedAndAnnotated	13559964,13559964,13561773	13562024,13562038,13561993	+,+,+	transcript_id-"c3a946cc-824b-4ddd-8f80-974e2aa6bca7|39",transcript_id-"18b7d2fe-2139-47a5-80ae-d33ba15460c0|20",transcript_id-"a531a3bd-1b35-4240-a0be-e40e3cd71890|6"
Chr1	13565365	13566361	AT1TE44385	.	+	ATREP10A	Helitron	RC	996	short	279	high	945361	pericentromeric	7026	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13566361	13566471	AT1TE44390	.	-	HELITRONY1C	Helitron	RC	110	short	120	medium	945251	pericentromeric	8022	no-CHH	no-CHH	.	.	.	.	.
Chr1	13566471	13568163	AT1TE44395	.	-	ARNOLDY2	MuDR	DNA	1692	short	288	high	943559	pericentromeric	8132	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13568163	13568218	AT1TE44400	.	+	ARNOLDY2	MuDR	DNA	55	tiny	288	high	943504	pericentromeric	9824	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13568218	13568323	AT1TE44405	.	-	HELITRONY3	Helitron	RC	105	short	1399	high	943399	pericentromeric	9879	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13569972	13570034	AT1TE44410	.	-	HELITRONY3	Helitron	RC	62	tiny	1399	high	941688	pericentromeric	11633	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13570034	13570068	AT1TE44415	.	-	ARNOLDY2	MuDR	DNA	34	tiny	288	high	941654	pericentromeric	11695	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr1	13570068	13570521	AT1TE44420	.	-	ATREP10B	Helitron	RC	453	short	491	high	941201	pericentromeric	11729	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	13570521	13571376	AT1TE44425	.	+	ATREP10B	Helitron	RC	855	short	491	high	940346	pericentromeric	12182	PolIV-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr1	13571376	13572049	AT1TE44430	.	+	ATREP10A	Helitron	RC	673	short	279	high	939673	pericentromeric	13037	no-CHH	no-RdDM	.	.	.	.	.
Chr1	13572049	13573262	AT1TE44435	.	-	HELITRONY3	Helitron	RC	1213	short	1399	high	938460	pericentromeric	13710	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	13572182	13572386	AT1TE44440	.	-	ARNOLDY1	MuDR	DNA	204	short	237	high	939336	pericentromeric	13843	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	13573279	13573424	AT1TE44445	.	-	HELITRONY3	Helitron	RC	145	short	1399	high	938298	pericentromeric	14940	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13573424	13576126	AT1TE44450	.	-	ATENSPM4	En-Spm	DNA	2702	medium	50	medium	935596	pericentromeric	15085	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	13576521,13576541,13576541,13576539,13576541	13573918,13573918,13574581,13574729,13574745	-,-,-,-,-	transcript_id-"14e0b7a6-8ba9-487b-9593-cd193d89ebda|449",transcript_id-"3be2fa2d-a18f-473f-82b8-554143d90b0d|71",transcript_id-"6e044e2c-8ce4-406e-82d0-bbcd9c1e1c5a|5",transcript_id-"585dba6e-938f-4f7b-b09a-c14ea67ddf6c|151",transcript_id-"70211a8b-2758-4716-9790-1f3b9e51d20e|16"
Chr1	13576126	13581525	AT1TE44455	.	-	ATENSPM2	En-Spm	DNA	5399	long	114	medium	930197	pericentromeric	17787	no-RdDM	no-RdDM	ExpressedAndAnnotated	13576521,13576541,13576541,13576539,13576541,13581060,13578291,13581058,13581058	13573918,13573918,13574581,13574729,13574745,13577194,13577226,13577259,13580734	-,-,-,-,-,-,-,-,-	transcript_id-"14e0b7a6-8ba9-487b-9593-cd193d89ebda|449",transcript_id-"3be2fa2d-a18f-473f-82b8-554143d90b0d|71",transcript_id-"6e044e2c-8ce4-406e-82d0-bbcd9c1e1c5a|5",transcript_id-"585dba6e-938f-4f7b-b09a-c14ea67ddf6c|151",transcript_id-"70211a8b-2758-4716-9790-1f3b9e51d20e|16",transcript_id-"246d6525-e6d7-4b22-b452-386e3bbb3b59|11",transcript_id-"d33eab52-815a-4dcd-93db-c70235c66101|5",transcript_id-"2728cb85-c02b-44d1-8a3d-daae4d883868|5",transcript_id-"ed400e43-f13f-4a40-b628-c1c2b526c5b1|7"
Chr1	13581683	13581734	AT1TE44460	.	-	ATREP4	Helitron	RC	51	tiny	832	high	929988	pericentromeric	23344	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr1	13581734	13581894	AT1TE44465	.	-	HELITRONY3	Helitron	RC	160	short	1399	high	929828	pericentromeric	23395	no-CHH	no-CHH	.	.	.	.	.
Chr1	13581894	13582929	AT1TE44470	.	+	ATREP10B	Helitron	RC	1035	short	491	high	928793	pericentromeric	23555	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13582929	13583578	AT1TE44475	.	+	ATREP10D	Helitron	RC	649	short	1295	high	928144	pericentromeric	24590	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13583578	13583598	AT1TE44480	.	+	ATREP10D	Helitron	RC	20	tiny	1295	high	928124	pericentromeric	25239	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13584483	13585600	AT1TE44485	.	+	ATREP10D	Helitron	RC	1117	short	1295	high	926122	pericentromeric	25384	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13585936	13586834	AT1TE44490	.	-	HELITRONY3	Helitron	RC	898	short	1399	high	924888	pericentromeric	24150	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13586834	13587040	AT1TE44495	.	+	ATREP10D	Helitron	RC	206	short	1295	high	924682	pericentromeric	23944	no-CHH	no-CHH	.	.	.	.	.
Chr1	13591766	13591828	AT1TE44505	.	-	ATREP13	Helitron	RC	62	tiny	106	medium	919894	pericentromeric	19156	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13591828	13591985	AT1TE44510	.	+	ATHILA4A	Gypsy	LTR	157	short	310	high	919737	pericentromeric	18999	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13592631	13592819	AT1TE44515	.	-	HELITRON1	Helitron	RC	188	short	130	medium	918903	pericentromeric	18165	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13592846	13593057	AT1TE44520	.	+	ATHILA4A	Gypsy	LTR	211	short	310	high	918665	pericentromeric	17927	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13593058	13597322	AT1TE44525	.	+	ATHILA4	Gypsy	LTR	4264	medium	250	high	914400	pericentromeric	13662	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13597433	13597667	AT1TE44530	.	+	ATHILA4A	Gypsy	LTR	234	short	310	high	914055	pericentromeric	13317	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13597674	13599711	AT1TE44535	.	+	ATHILA4B_LTR	Gypsy	LTR	2037	medium	143	medium	912011	pericentromeric	11273	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	13599711	13600943	AT1TE44540	.	+	ATHILA4A	Gypsy	LTR	1232	short	310	high	910779	pericentromeric	10041	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13600944	13601035	AT1TE44545	.	+	ATHILA4C	Gypsy	LTR	91	tiny	206	high	910687	pericentromeric	9949	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	13601552	13601688	AT1TE44550	.	+	BRODYAGA2	MuDR	DNA	136	short	525	high	910034	pericentromeric	9296	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13601688	13603065	AT1TE44555	.	-	HELITRONY1B	Helitron	RC	1377	short	414	high	908657	pericentromeric	7919	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	13603065	13603112	AT1TE44560	.	-	HELITRONY3	Helitron	RC	47	tiny	1399	high	908610	pericentromeric	7872	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	13603114	13603144	AT1TE44565	.	-	HELITRONY1E	Helitron	RC	30	tiny	447	high	908578	pericentromeric	7840	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	13606761	13607807	AT1TE44575	.	+	VANDAL18	MuDR	DNA	1046	short	14	low	903915	pericentromeric	3177	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	13612473	13612745	AT1TE44585	.	+	VANDAL18	MuDR	DNA	272	short	14	low	898977	pericentromeric	0	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	13614381	13614631	AT1TE44590	.	-	HELITRONY3	Helitron	RC	250	short	1399	high	897091	pericentromeric	258	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13616743	13616953	AT1TE44595	.	+	ATLINE1A	L1	LINE	210	short	289	high	894769	pericentromeric	510	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13617361	13617633	AT1TE44600	.	+	TA11	L1	LINE	272	short	157	medium	894089	pericentromeric	1128	no-RdDM	no-CHH	.	.	.	.	.
Chr1	13617796	13623173	AT1TE44605	.	+	TA11	L1	LINE	5377	long	157	medium	888549	pericentromeric	1563	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	13621477	13621506	AT1TE44610	.	-	ATHILA4A	Gypsy	LTR	29	tiny	310	high	890216	pericentromeric	5244	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	13621506	13622705	AT1TE44615	.	-	ATHILA4B_LTR	Gypsy	LTR	1199	short	143	medium	889017	pericentromeric	5273	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	13623193	13623304	AT1TE44620	.	+	TA11	L1	LINE	111	short	157	medium	888418	pericentromeric	6960	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	13623932	13624551	AT1TE44625	.	-	ATREP13	Helitron	RC	619	short	106	medium	887171	pericentromeric	7699	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13625189	13632772	AT1TE44630	.	-	ATENSPM2	En-Spm	DNA	7583	long	114	medium	878950	pericentromeric	2563	no-RdDM	no-RdDM	ExpressedAndAnnotated	13628289,13628292,13628292,13627280,13628292,13632313,13632311	13625801,13625801,13625801,13625850,13627160,13631850,13631988	-,-,-,-,-,-,-	transcript_id-"36ea73e0-9368-40cc-b573-25bbeaa517af|12",transcript_id-"1b5e8b56-47ca-4dfb-8e70-08c87593b542|496",transcript_id-"c0433389-54ac-4f69-bfe4-669679197f15|22",transcript_id-"4dd34797-cc44-4bb8-b1f3-dbbb45927068|10",transcript_id-"5b12c781-b211-421a-8fe3-15a7975ea767|3",transcript_id-"0a54b9fe-9d4e-45a4-b064-c8860f42ffa2|5",transcript_id-"8406ca62-e70f-47de-95fe-8a5bc0de46a4|23"
Chr1	13636666	13636804	AT1TE44640	.	-	HELITRONY2	Helitron	RC	139	short	198	medium	874918	pericentromeric	1144	.	.	.	.	.	.	.
Chr1	13638201	13638303	AT1TE44645	.	-	ATREP3	Helitron	RC	102	short	1439	high	873419	pericentromeric	2296	no-CHH	no-CHH	.	.	.	.	.
Chr1	13638713	13638897	AT1TE44650	.	+	ATSINE2A	.	SINE	184	short	33	low	872825	pericentromeric	1702	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	13643188	13644511	AT1TE44660	.	-	ATLINE1_5	L1	LINE	1323	short	91	medium	867211	pericentromeric	280	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	13644511	13644543	AT1TE44665	.	-	ATLINE1_5	L1	LINE	32	tiny	91	medium	867179	pericentromeric	1603	RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13644551	13648938	AT1TE44670	.	-	ATHILA6B	Gypsy	LTR	4387	medium	134	medium	862784	pericentromeric	1643	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	13649001	13649326	AT1TE44675	.	-	ATHILA	Gypsy	LTR	325	short	198	medium	862396	pericentromeric	6093	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	13649326	13650463	AT1TE44680	.	-	ATHILA6B	Gypsy	LTR	1137	short	134	medium	861259	pericentromeric	6418	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13650463	13650501	AT1TE44685	.	-	ATHILA6B	Gypsy	LTR	38	tiny	134	medium	861221	pericentromeric	7555	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13650501	13654369	AT1TE44690	.	-	ATHILA2	Gypsy	LTR	3868	medium	413	high	857353	pericentromeric	7593	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13654369	13654390	AT1TE44695	.	-	ATHILA6B	Gypsy	LTR	21	tiny	134	medium	857332	pericentromeric	11461	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	13654402	13654645	AT1TE44700	.	-	ATREP10D	Helitron	RC	243	short	1295	high	857077	pericentromeric	11494	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13654645	13655611	AT1TE44705	.	-	HELITRONY1B	Helitron	RC	966	short	414	high	856111	pericentromeric	11737	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13656662	13656766	AT1TE44710	.	+	TNAT2A	.	DNA	104	short	38	low	854956	pericentromeric	12877	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13658878	13659269	AT1TE44715	.	+	ATREP4	Helitron	RC	391	short	832	high	852453	pericentromeric	10374	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13659272	13667557	AT1TE44720	.	+	ATGP1	Gypsy	LTR	8285	long	144	medium	844165	pericentromeric	2086	no-RdDM	no-RdDM	ExpressedAndAnnotated	13666525,13666526	13667514,13667459	+,+	transcript_id-"80447822-f04e-4456-a65f-7343412db4cd|3",transcript_id-"e594b19e-1043-49e3-ac79-88867889d9f3|5"
Chr1	13667558	13668150	AT1TE44725	.	-	ATREP4	Helitron	RC	592	short	832	high	843572	pericentromeric	1493	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	13668180	13669232	AT1TE44730	.	+	ATREP1	Helitron	RC	1052	short	498	high	842490	pericentromeric	411	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	13669232	13669253	AT1TE44735	.	+	ATREP4	Helitron	RC	21	tiny	832	high	842469	pericentromeric	390	no-CHH	no-CHH	.	.	.	.	.
Chr1	13669253	13669410	AT1TE44740	.	-	ATREP10B	Helitron	RC	157	short	491	high	842312	pericentromeric	233	no-CHH	no-CHH	.	.	.	.	.
Chr1	13669410	13669447	AT1TE44745	.	+	ATREP10D	Helitron	RC	37	tiny	1295	high	842275	pericentromeric	196	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	13671168	13671663	AT1TE44750	.	-	ATHATN1	HAT	DNA	495	short	69	medium	840059	pericentromeric	212	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	13674277	13674877	AT1TE44755	.	-	ATHATN7	HAT	DNA	600	short	71	medium	836845	pericentromeric	338	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13674916	13675271	AT1TE44760	.	+	BRODYAGA1	MuDR	DNA	355	short	251	high	836451	pericentromeric	977	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13676764	13677268	AT1TE44765	.	+	ATLANTYS1	Gypsy	LTR	504	short	153	medium	834454	pericentromeric	2825	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	13676967	13677182	+	transcript_id-"99155c9e-1c20-47f8-bda9-6dcef5c9294d|6"
Chr1	13677268	13680779	AT1TE44770	.	-	ATGP3	Gypsy	LTR	3511	medium	60	medium	830943	pericentromeric	3011	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	13682261	13682800	AT1TE44775	.	+	ATLANTYS1	Gypsy	LTR	539	short	153	medium	828922	pericentromeric	990	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13684549	13684676	AT1TE44780	.	-	ATLINE1A	L1	LINE	127	short	289	high	827046	pericentromeric	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13684721	13686164	AT1TE44785	.	-	ATREP10D	Helitron	RC	1443	short	1295	high	825558	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	13685402	13685867	AT1TE44790	.	-	ATTIR16T3A	.	DNA	465	short	106	medium	825855	pericentromeric	478	no-CHH	no-CHH	.	.	.	.	.
Chr1	13686650	13687570	AT1TE44795	.	+	HELITRONY1A	Helitron	RC	920	short	271	high	824152	pericentromeric	1726	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13687570	13687739	AT1TE44800	.	+	ATREP10B	Helitron	RC	169	short	491	high	823983	pericentromeric	2646	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13687789	13688012	AT1TE44805	.	+	ATHATN1	HAT	DNA	223	short	69	medium	823710	pericentromeric	2865	no-CHH	no-CHH	.	.	.	.	.
Chr1	13688979	13689304	AT1TE44810	.	+	HELITRONY1D	Helitron	RC	325	short	756	high	822418	pericentromeric	4055	no-CHH	no-CHH	.	.	.	.	.
Chr1	13689304	13689333	AT1TE44815	.	-	HELITRONY1D	Helitron	RC	29	tiny	756	high	822389	pericentromeric	4380	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr1	13690654	13690718	AT1TE44820	.	+	TA11	L1	LINE	64	tiny	157	medium	821004	pericentromeric	5521	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	13690718	13693207	AT1TE44825	.	+	ATLINE1_4	L1	LINE	2489	medium	102	medium	818515	pericentromeric	3032	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	13693207	13693309	AT1TE44830	.	+	ATLINE1_4	L1	LINE	102	short	102	medium	818413	pericentromeric	2930	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	13699518	13699678	AT1TE44850	.	+	ATREP4	Helitron	RC	160	short	832	high	812044	pericentromeric	942	no-CHH	no-CHH	.	.	.	.	.
Chr1	13699679	13700601	AT1TE44855	.	-	ARNOLDY2	MuDR	DNA	922	short	288	high	811121	pericentromeric	315	no-CHH	no-CHH	.	.	.	.	.
Chr1	13700601	13700621	AT1TE44860	.	+	ATREP5	Helitron	RC	20	tiny	624	high	811101	pericentromeric	295	no-CHH	no-CHH	.	.	.	.	.
Chr1	13700621	13700690	AT1TE44865	.	+	HELITRONY3	Helitron	RC	69	tiny	1399	high	811032	pericentromeric	226	no-CHH	no-CHH	.	.	.	.	.
Chr1	13704116	13706547	AT1TE44875	.	-	ATDNAI26T9	MuDR	DNA	2431	medium	25	low	805175	pericentromeric	592	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	13706960	13706999	AT1TE44880	.	+	ATDNA2T9C	MuDR	DNA	39	tiny	242	high	804723	pericentromeric	3436	no-CHH	RDR6-RdDM	.	.	.	.	.
Chr1	13706999	13707423	AT1TE44885	.	+	ATREP10D	Helitron	RC	424	short	1295	high	804299	pericentromeric	3475	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13707423	13708135	AT1TE44890	.	-	VANDAL21	MuDR	DNA	712	short	64	medium	803587	pericentromeric	3899	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	13708141	13709758	AT1TE44895	.	+	ATHILA5	Gypsy	LTR	1617	short	131	medium	801964	pericentromeric	4617	no-RdDM	no-RdDM	ExpressedAndAnnotated	13707709	13708812	+	transcript_id-"f18dfb77-10c7-4a01-b2b8-af9b8a0963f5|9"
Chr1	13709853	13710028	AT1TE44900	.	-	VANDAL21	MuDR	DNA	175	short	64	medium	801694	pericentromeric	6329	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr1	13711058	13712501	AT1TE44905	.	+	ATHILA2	Gypsy	LTR	1443	short	413	high	799221	pericentromeric	7534	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	13710089	13712079	+	transcript_id-"a5e3485a-9b4f-47ee-ad00-07d3bd4df269|3"
Chr1	13712508	13714228	AT1TE44910	.	-	VANDAL21	MuDR	DNA	1720	short	64	medium	797494	pericentromeric	8984	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	13714228	13714597	AT1TE44915	.	-	VANDAL21	MuDR	DNA	369	short	64	medium	797125	pericentromeric	10704	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	13714597	13714755	AT1TE44920	.	-	VANDAL21	MuDR	DNA	158	short	64	medium	796967	pericentromeric	11073	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	13714574	13714829	+	transcript_id-"d926d0cc-e081-41e0-99c0-aa28f93be6a8|3"
Chr1	13714762	13715002	AT1TE44925	.	-	ATHATN3A	HAT	DNA	240	short	20	low	796720	pericentromeric	11238	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	13715002	13716730	AT1TE44930	.	-	VANDAL21	MuDR	DNA	1728	short	64	medium	794992	pericentromeric	11478	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	13716738	13717144	AT1TE44935	.	-	ATREP10D	Helitron	RC	406	short	1295	high	794578	pericentromeric	13214	no-RdDM	no-CHH	.	.	.	.	.
Chr1	13717240	13718566	AT1TE44940	.	-	VANDAL17	MuDR	DNA	1326	short	178	medium	793156	pericentromeric	13716	no-RdDM	no-CHH	ExpressedAndAnnotated	13717420	13717955	+	transcript_id-"df754dad-474c-45aa-8fcc-49179325baff|7"
Chr1	13719499	13721663	AT1TE44945	.	+	ATGP8	Gypsy	LTR	2164	medium	92	medium	790059	pericentromeric	15975	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	13719685	13720042	AT1TE44950	.	+	ATGP8	Gypsy	LTR	357	short	92	medium	791680	pericentromeric	16161	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	13721909	13721979	AT1TE44955	.	+	ATGP8	Gypsy	LTR	70	tiny	92	medium	789743	pericentromeric	18385	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	13722644	13722708	AT1TE44960	.	+	ATGP9B	Gypsy	LTR	64	tiny	27	low	789014	pericentromeric	19120	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	13723189	13724194	AT1TE44965	.	+	ATGP9B	Gypsy	LTR	1005	short	27	low	787528	pericentromeric	19665	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	13724566	13724619	AT1TE44970	.	+	ATGP9B	Gypsy	LTR	53	tiny	27	low	787103	pericentromeric	21042	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	13725404	13725795	AT1TE44975	.	+	ATGP8	Gypsy	LTR	391	short	92	medium	785927	pericentromeric	21880	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	13725795	13728135	AT1TE44980	.	-	VANDAL17	MuDR	DNA	2340	medium	178	medium	783587	pericentromeric	22271	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	13730390	13731324	AT1TE44985	.	+	ATIS112A	Harbinger	DNA	934	short	173	medium	780398	pericentromeric	26866	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13731799	13732256	AT1TE44990	.	-	VANDAL17	MuDR	DNA	457	short	178	medium	779466	pericentromeric	28275	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	13732511	13732706	AT1TE44995	.	+	ATMU2	MuDR	DNA	195	short	64	medium	779016	pericentromeric	28987	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr1	13732706	13732734	AT1TE45000	.	-	ATMU1	MuDR	DNA	28	tiny	59	medium	778988	pericentromeric	29182	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13732920	13732969	AT1TE45005	.	+	ATENSPM6	En-Spm	DNA	49	tiny	151	medium	778753	pericentromeric	28956	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	13732969	13734491	AT1TE45010	.	+	ATENSPM9	En-Spm	DNA	1522	short	97	medium	777231	pericentromeric	27434	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	13734491	13734679	AT1TE45015	.	-	ATENSPM6	En-Spm	DNA	188	short	151	medium	777043	pericentromeric	27246	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	13734679	13743201	AT1TE45020	.	-	ATENSPM5	En-Spm	DNA	8522	long	111	medium	768521	pericentromeric	18724	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	13738310,13738315	13735393,13735393	-,-	transcript_id-"d80a7056-263e-45d2-a50a-3edb456099f3|4",transcript_id-"01f85c24-e5df-4674-ab2e-5467a0d68526|5"
Chr1	13743517	13743864	AT1TE45025	.	+	ATENSPM5	En-Spm	DNA	347	short	111	medium	767858	pericentromeric	18061	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13744169	13744515	AT1TE45030	.	+	ATENSPM2	En-Spm	DNA	346	short	114	medium	767207	pericentromeric	17410	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13747237	13747657	AT1TE45035	.	+	ATENSPM6	En-Spm	DNA	420	short	151	medium	764065	pericentromeric	14268	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	13747786	13747815	AT1TE45040	.	+	BRODYAGA1	MuDR	DNA	29	tiny	251	high	763907	pericentromeric	14110	no-CHH	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	13747815	13748091	AT1TE45045	.	+	ATMU10	MuDR	DNA	276	short	87	medium	763631	pericentromeric	13834	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	13748186	13748454	AT1TE45050	.	-	ATGP5	Gypsy	LTR	268	short	86	medium	763268	pericentromeric	13471	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	13749032	13749077	AT1TE45055	.	+	ATREP3	Helitron	RC	45	tiny	1439	high	762645	pericentromeric	12848	RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr1	13749077	13750339	AT1TE45060	.	-	HELITRONY1E	Helitron	RC	1262	short	447	high	761383	pericentromeric	11586	no-CHH	no-CHH	.	.	.	.	.
Chr1	13750339	13750401	AT1TE45065	.	-	HELITRONY1E	Helitron	RC	62	tiny	447	high	761321	pericentromeric	11524	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	13750401	13750457	AT1TE45070	.	+	HELITRON1	Helitron	RC	56	tiny	130	medium	761265	pericentromeric	11468	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	13750457	13751045	AT1TE45075	.	+	HELITRON1	Helitron	RC	588	short	130	medium	760677	pericentromeric	10880	no-RdDM	no-CHH	.	.	.	.	.
Chr1	13751045	13757083	AT1TE45080	.	+	HELITRON1	Helitron	RC	6038	long	130	medium	754639	pericentromeric	4842	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	13757098	13757122	AT1TE45085	.	+	HELITRON1	Helitron	RC	24	tiny	130	medium	754600	pericentromeric	4803	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	13757122	13758799	AT1TE45090	.	+	HELITRON1	Helitron	RC	1677	short	130	medium	752923	pericentromeric	3126	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	13759679	13759975	AT1TE45095	.	-	ATREP3	Helitron	RC	296	short	1439	high	751747	pericentromeric	1950	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	13759975	13761074	AT1TE45100	.	-	HELITRONY1A	Helitron	RC	1099	short	271	high	750648	pericentromeric	851	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	13761074	13761108	AT1TE45105	.	+	ATREP1	Helitron	RC	34	tiny	498	high	750614	pericentromeric	817	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	13761108	13761821	AT1TE45110	.	+	ATREP15	Helitron	RC	713	short	1003	high	749901	pericentromeric	104	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	13761821	13761874	AT1TE45115	.	+	ATREP10A	Helitron	RC	53	tiny	279	high	749848	pericentromeric	51	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	13764317	13765814	AT1TE45120	.	+	HELITRONY2	Helitron	RC	1497	short	198	medium	745908	pericentromeric	52	no-RdDM	no-CHH	.	.	.	.	.
Chr1	13765814	13765888	AT1TE45125	.	+	HELITRONY2	Helitron	RC	74	tiny	198	medium	745834	pericentromeric	1549	no-RdDM	no-CHH	.	.	.	.	.
Chr1	13768439	13768753	AT1TE45130	.	-	ATLANTYS2	Gypsy	LTR	314	short	179	medium	742969	pericentromeric	4174	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13768753	13777586	AT1TE45135	.	+	ATHILA2	Gypsy	LTR	8833	long	413	high	734136	pericentromeric	4488	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	13776334	13777219	+	transcript_id-"f8adaf43-4c7e-42e0-a913-76ef59fd5b80|4"
Chr1	13777586	13777610	AT1TE45140	.	+	ATHILA6A	Gypsy	LTR	24	tiny	247	high	734112	pericentromeric	13321	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	13777610	13785849	AT1TE45145	.	-	ATLANTYS2	Gypsy	LTR	8239	long	179	medium	725873	pericentromeric	13345	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	13778340,13778341,13779537	13780181,13780182,13780016	+,+,+	transcript_id-"b51b1a11-2345-4086-b6d7-d4a863750626|5",transcript_id-"24c00da4-eaca-4da0-9124-d89bd9f0fc92|6",transcript_id-"b617f8fc-342c-4727-a0f1-74b7e0d2c769|3"
Chr1	13779965	13781169	AT1TE45150	.	-	ATHILA4B_LTR	Gypsy	LTR	1204	short	143	medium	730553	pericentromeric	15700	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	13778340,13778341	13780181,13780182	+,+	transcript_id-"b51b1a11-2345-4086-b6d7-d4a863750626|5",transcript_id-"24c00da4-eaca-4da0-9124-d89bd9f0fc92|6"
Chr1	13781169	13782305	AT1TE45155	.	-	ATHILA4A	Gypsy	LTR	1136	short	310	high	729417	pericentromeric	16904	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	13782305	13784780	AT1TE45160	.	-	ATHILA4	Gypsy	LTR	2475	medium	250	high	726942	pericentromeric	18040	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr1	13784780	13785497	AT1TE45165	.	-	ATHILA4B_LTR	Gypsy	LTR	717	short	143	medium	726225	pericentromeric	20515	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	13785858	13786684	AT1TE45170	.	+	ATGP5	Gypsy	LTR	826	short	86	medium	725038	pericentromeric	21593	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	13786684	13795195	AT1TE45175	.	+	ATHILA6A	Gypsy	LTR	8511	long	247	high	716527	pericentromeric	21263	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	13795195	13796032	AT1TE45180	.	+	ATHILA6A	Gypsy	LTR	837	short	247	high	715690	pericentromeric	20426	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	13796032	13796397	AT1TE45185	.	+	ATGP5	Gypsy	LTR	365	short	86	medium	715325	pericentromeric	20061	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	13796133,13796133	13796530,13796587	+,+	transcript_id-"dcf7e754-c4e6-41c0-8759-4e452e081b4b|10",transcript_id-"bbcb1eb5-8451-45a9-be01-d9c846238e02|20"
Chr1	13796397	13796451	AT1TE45190	.	+	ATGP5	Gypsy	LTR	54	tiny	86	medium	715271	pericentromeric	20007	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	13796451	13796498	AT1TE45195	.	-	ATHILA2	Gypsy	LTR	47	tiny	413	high	715224	pericentromeric	19960	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	13796498	13800080	AT1TE45200	.	-	ATHILA2	Gypsy	LTR	3582	medium	413	high	711642	pericentromeric	16378	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	13800080	13800666	AT1TE45205	.	-	ATHILA6B	Gypsy	LTR	586	short	134	medium	711056	pericentromeric	15792	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	13800666	13801784	AT1TE45210	.	-	ATHILA2	Gypsy	LTR	1118	short	413	high	709938	pericentromeric	14674	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	13801784	13801876	AT1TE45215	.	-	ATHILA	Gypsy	LTR	92	tiny	198	medium	709846	pericentromeric	14582	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	13803948	13806829	AT1TE45220	.	+	HELITRON1	Helitron	RC	2881	medium	130	medium	704893	pericentromeric	9629	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	13806829	13806939	AT1TE45225	.	+	HELITRON5	Helitron	RC	110	short	56	medium	704783	pericentromeric	9519	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	13807623	13807653	AT1TE45230	.	+	ATREP15	Helitron	RC	30	tiny	1003	high	704069	pericentromeric	8805	no-RdDM	no-CHH	.	.	.	.	.
Chr1	13807671	13807787	AT1TE45235	.	-	ATREP3	Helitron	RC	116	short	1439	high	703935	pericentromeric	8671	no-RdDM	no-CHH	.	.	.	.	.
Chr1	13807787	13809671	AT1TE45240	.	-	HELITRONY1E	Helitron	RC	1884	short	447	high	702051	pericentromeric	6787	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	13809671	13810001	AT1TE45245	.	-	ATREP10D	Helitron	RC	330	short	1295	high	701721	pericentromeric	6457	no-CHH	no-CHH	.	.	.	.	.
Chr1	13810001	13810143	AT1TE45250	.	+	ATREP10D	Helitron	RC	142	short	1295	high	701579	pericentromeric	6315	no-CHH	no-CHH	.	.	.	.	.
Chr1	13810143	13810195	AT1TE45255	.	-	ATREP1	Helitron	RC	52	tiny	498	high	701527	pericentromeric	6263	no-CHH	no-CHH	.	.	.	.	.
Chr1	13810195	13810903	AT1TE45260	.	+	ATREP15	Helitron	RC	708	short	1003	high	700819	pericentromeric	5555	no-CHH	no-CHH	.	.	.	.	.
Chr1	13810903	13811477	AT1TE45265	.	-	ATREP2	Helitron	RC	574	short	164	medium	700245	pericentromeric	4981	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13811477	13811632	AT1TE45270	.	+	HELITRONY1D	Helitron	RC	155	short	756	high	700090	pericentromeric	4826	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13811875	13811962	AT1TE45275	.	+	ATREP5	Helitron	RC	87	tiny	624	high	699760	pericentromeric	4496	no-CHH	no-CHH	.	.	.	.	.
Chr1	13811962	13812763	AT1TE45280	.	+	ATREP11	Helitron	RC	801	short	841	high	698959	pericentromeric	3695	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13812903	13813117	AT1TE45285	.	-	ATCOPIA58	Copia	LTR	214	short	18	low	698605	pericentromeric	3341	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13813361	13813423	AT1TE45290	.	-	TNAT1A	.	DNA	62	tiny	162	medium	698299	pericentromeric	3035	no-RdDM	no-CHH	.	.	.	.	.
Chr1	13813423	13813893	AT1TE45295	.	-	ATREP18	.	DNA	470	short	391	high	697829	pericentromeric	2565	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	13813893	13813957	AT1TE45300	.	-	TNAT1A	.	DNA	64	tiny	162	medium	697765	pericentromeric	2501	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13818512	13818559	AT1TE45310	.	+	ATGP9LTR	Gypsy	LTR	47	tiny	10	low	693163	pericentromeric	406	RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	13818559	13823827	AT1TE45315	.	+	ATGP3	Gypsy	LTR	5268	long	60	medium	687895	pericentromeric	453	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	13823827	13823889	AT1TE45320	.	+	VANDAL16	MuDR	DNA	62	tiny	42	low	687833	pericentromeric	5721	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	13825089	13825125	AT1TE45325	.	-	ATCOPIA41	Copia	LTR	36	tiny	39	low	686597	pericentromeric	6983	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	13825125	13826189	AT1TE45330	.	-	ATCOPIA41	Copia	LTR	1064	short	39	low	685533	pericentromeric	7019	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	13826189	13826735	AT1TE45335	.	-	ATCOPIA42	Copia	LTR	546	short	35	low	684987	pericentromeric	8083	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	13826735	13826780	AT1TE45340	.	-	ATCOPIA42	Copia	LTR	45	tiny	35	low	684942	pericentromeric	8629	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	13827363	13827495	AT1TE45345	.	-	ATCOPIA42	Copia	LTR	132	short	35	low	684227	pericentromeric	8921	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	13827495	13828484	AT1TE45350	.	-	ATCOPIA41	Copia	LTR	989	short	39	low	683238	pericentromeric	7932	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	13828484	13832149	AT1TE45355	.	+	ATGP1	Gypsy	LTR	3665	medium	144	medium	679573	pericentromeric	4267	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13832175	13834264	AT1TE45360	.	-	ATCOPIA94	Copia	LTR	2089	medium	39	low	677458	pericentromeric	2152	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13834264	13835790	AT1TE45365	.	-	ATCOPIA75	Copia	LTR	1526	short	20	low	675932	pericentromeric	626	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	13837842	13838008	AT1TE45370	.	-	RathE3_cons	.	RathE3_cons	166	short	104	medium	673714	pericentromeric	917	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	13840024	13840159	AT1TE45375	.	-	ATENSPM3	En-Spm	DNA	135	short	98	medium	671563	pericentromeric	3099	no-RdDM	no-RdDM	ExpressedAndAnnotated	13840173,13841658	13839844,13839910	-,-	transcript_id-"9c1b4675-c732-4d63-95cf-817e071db83d|72",transcript_id-"f2d9a5c6-3ae1-4251-b9a6-5ba19d5cf747|292"
Chr1	13840159	13840729	AT1TE45380	.	-	ATENSPM7	En-Spm	DNA	570	short	74	medium	670993	pericentromeric	3234	no-RdDM	no-RdDM	ExpressedAndAnnotated	13841658,13841658,13841658	13838549,13839902,13839910	-,-,-	transcript_id-"d2b8fce8-651b-4ca6-897b-290647c3670f|5",transcript_id-"31c7bae8-14b1-4aaa-bc00-4574bc7fe3b0|49",transcript_id-"f2d9a5c6-3ae1-4251-b9a6-5ba19d5cf747|292"
Chr1	13840761	13840830	AT1TE45385	.	-	ATENSPM7	En-Spm	DNA	69	tiny	74	medium	670892	pericentromeric	3836	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	13841051	13841405	AT1TE45390	.	-	ATGP10	Gypsy	LTR	354	short	165	medium	670317	pericentromeric	4126	no-RdDM	no-RdDM	ExpressedAndAnnotated	13841658,13841658,13841658	13838549,13839902,13841048	-,-,-	transcript_id-"d2b8fce8-651b-4ca6-897b-290647c3670f|5",transcript_id-"31c7bae8-14b1-4aaa-bc00-4574bc7fe3b0|49",transcript_id-"5242c633-da8c-4769-918a-15b4347e8716|70"
Chr1	13842618	13847118	AT1TE45395	.	-	ATENSPM7	En-Spm	DNA	4500	medium	74	medium	664604	pericentromeric	5693	no-RdDM	no-RdDM	ExpressedAndAnnotated	13842033,13842033,13842033,13842033,13842033,13842039	13842950,13843110,13843188,13843192,13843318,13843395	+,+,+,+,+,+	transcript_id-"db17d737-8a54-41ae-978c-7f5979054834|104",transcript_id-"d9cdfd34-7188-44dd-b0cc-ce61d93c3848|5",transcript_id-"41b92169-6a90-474e-b263-97c765d8e249|49",transcript_id-"93b66ced-004d-47f3-8f32-5e272fa937d9|8",transcript_id-"c6074b74-2ad6-4e88-946a-1104022589ad|18",transcript_id-"dc231b98-9ead-43be-badd-94ed9dc503b1|10"
Chr1	13849414	13849523	AT1TE45400	.	+	LIMPET1	MuDR	DNA	109	short	116	medium	662199	pericentromeric	3652	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13849610	13849631	AT1TE45405	.	+	ATDNA1T9A	MuDR	DNA	21	tiny	36	low	662091	pericentromeric	3544	no-CHH	no-RdDM	.	.	.	.	.
Chr1	13849633	13850166	AT1TE45410	.	+	VANDAL5A	MuDR	DNA	533	short	56	medium	661556	pericentromeric	3009	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	13850478	13851106	AT1TE45415	.	+	ATDNAI27T9C	MuDR	DNA	628	short	108	medium	660616	pericentromeric	2069	PolIV-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	13850662	13850064	-	transcript_id-"20bce740-d976-4112-b60b-8907142d2b15|11"
Chr1	13851107	13851141	AT1TE45420	.	+	ATDNAI27T9A	MuDR	DNA	35	tiny	116	medium	660581	pericentromeric	2034	.	.	.	.	.	.	.
Chr1	13851264	13852459	AT1TE45425	.	+	LIMPET1	MuDR	DNA	1195	short	116	medium	659263	pericentromeric	716	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13854429	13855683	AT1TE45430	.	-	ATLINE1A	L1	LINE	1254	short	289	high	656039	pericentromeric	846	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13855683	13856298	AT1TE45435	.	+	ARNOLDY1	MuDR	DNA	615	short	237	high	655424	pericentromeric	2100	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13856850	13856962	AT1TE45440	.	-	ATDNA2T9C	MuDR	DNA	112	short	242	high	654760	pericentromeric	3267	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13856962	13857723	AT1TE45445	.	-	ATREP6	Helitron	RC	761	short	181	medium	653999	pericentromeric	3379	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13857723	13857757	AT1TE45450	.	-	ATREP3	Helitron	RC	34	tiny	1439	high	653965	pericentromeric	4140	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	13860027	13860223	AT1TE45455	.	-	TNAT1A	.	DNA	196	short	162	medium	651499	pericentromeric	6444	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13860223	13860289	AT1TE45460	.	+	TNAT1A	.	DNA	66	tiny	162	medium	651433	pericentromeric	6640	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr1	13860289	13861071	AT1TE45465	.	-	BRODYAGA2	MuDR	DNA	782	short	525	high	650651	pericentromeric	6496	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	13862920	13862957	AT1TE45470	.	-	ATHILA5	Gypsy	LTR	37	tiny	131	medium	648765	pericentromeric	4610	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	13862958	13864749	AT1TE45475	.	-	ATHILA6A	Gypsy	LTR	1791	short	247	high	646973	pericentromeric	2818	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	13864039	13862753	-	transcript_id-"1d051d52-6ce7-4253-86d3-363e2be94e01|5"
Chr1	13865722	13867368	AT1TE45480	.	+	HELITRONY3	Helitron	RC	1646	short	1399	high	644354	pericentromeric	199	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13867368	13867422	AT1TE45485	.	+	BRODYAGA1A	MuDR	DNA	54	tiny	586	high	644300	pericentromeric	145	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	13869520	13869865	AT1TE45490	.	+	ATREP14	Helitron	RC	345	short	47	low	641857	pericentromeric	30	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	13868866	13869813	+	transcript_id-"f4ca71fb-0249-46bc-8c76-d3ef7b75c829|3"
Chr1	13869865	13870461	AT1TE45495	.	+	ATREP2	Helitron	RC	596	short	164	medium	641261	pericentromeric	375	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	13870461	13870688	AT1TE45500	.	-	ATREP4	Helitron	RC	227	short	832	high	641034	pericentromeric	971	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	13870688	13870808	AT1TE45505	.	+	ATREP10D	Helitron	RC	120	short	1295	high	640914	pericentromeric	1198	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	13871157	13871383	AT1TE45510	.	+	ATENSPM6	En-Spm	DNA	226	short	151	medium	640339	pericentromeric	1667	no-RdDM	no-CHH	ExpressedAndAnnotated	13868858	13872638	+	transcript_id-"d81fd4b9-20af-45d2-9df6-3895346b3949|4"
Chr1	13873436	13876440	AT1TE45515	.	-	VANDAL21	MuDR	DNA	3004	medium	64	medium	635282	pericentromeric	3946	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13878659	13878930	AT1TE45520	.	-	ATREP3	Helitron	RC	271	short	1439	high	632792	pericentromeric	9169	no-CHH	no-CHH	.	.	.	.	.
Chr1	13878930	13879034	AT1TE45525	.	-	ATREP2A	Helitron	RC	104	short	116	medium	632688	pericentromeric	9440	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13879034	13879890	AT1TE45530	.	-	ATREP2A	Helitron	RC	856	short	116	medium	631832	pericentromeric	9544	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13879890	13880023	AT1TE45535	.	-	ATREP4	Helitron	RC	133	short	832	high	631699	pericentromeric	10400	no-CHH	no-CHH	.	.	.	.	.
Chr1	13881563	13881653	AT1TE45540	.	-	ATREP10D	Helitron	RC	90	tiny	1295	high	630069	pericentromeric	12073	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13881653	13882600	AT1TE45545	.	-	ATREP7	Helitron	RC	947	short	164	medium	629122	pericentromeric	12163	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13882600	13882664	AT1TE45550	.	+	ATREP9	Helitron	RC	64	tiny	201	high	629058	pericentromeric	13110	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13882664	13882982	AT1TE45555	.	-	ATREP10D	Helitron	RC	318	short	1295	high	628740	pericentromeric	13174	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13883072	13890962	AT1TE45560	.	+	ATGP1	Gypsy	LTR	7890	long	144	medium	620760	pericentromeric	7743	no-RdDM	no-RdDM	ExpressedAndAnnotated	13888674,13889932	13889047,13890879	+,+	transcript_id-"1683404c-5362-4107-a5bc-3150aedbb662|3",transcript_id-"63c1fc34-707d-4a52-918d-ae88731d2393|8"
Chr1	13894163	13894969	AT1TE45570	.	-	ATDNA12T3_2	.	DNA	806	short	660	high	616753	pericentromeric	3736	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13894970	13895793	AT1TE45575	.	-	ATREP5	Helitron	RC	823	short	624	high	615929	pericentromeric	2912	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13895842	13895927	AT1TE45580	.	-	AT9NMU1	MuDR	DNA	85	tiny	45	low	615795	pericentromeric	2778	no-CHH	no-CHH	.	.	.	.	.
Chr1	13896254	13896396	AT1TE45585	.	+	RathE3_cons	.	RathE3_cons	142	short	104	medium	615326	pericentromeric	2309	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	13896396	13897259	AT1TE45590	.	-	ATREP3	Helitron	RC	863	short	1439	high	614463	pericentromeric	1446	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	13897259	13897961	AT1TE45595	.	+	ATREP9	Helitron	RC	702	short	201	high	613761	pericentromeric	744	no-CHH	no-CHH	.	.	.	.	.
Chr1	13899345	13899585	AT1TE45600	.	+	ATENSPM6	En-Spm	DNA	240	short	151	medium	612137	pericentromeric	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	13900990	13901100	AT1TE45605	.	-	ATREP15	Helitron	RC	110	short	1003	high	610622	pericentromeric	758	no-CHH	no-CHH	.	.	.	.	.
Chr1	13901100	13901961	AT1TE45610	.	+	META1	Copia	LTR	861	short	138	medium	609761	pericentromeric	868	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13901966	13902395	AT1TE45615	.	+	ATDNAI27T9A	MuDR	DNA	429	short	116	medium	609327	pericentromeric	1734	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	13902969	13903529	AT1TE45620	.	+	ATDNAI27T9B	MuDR	DNA	560	short	43	low	608193	pericentromeric	2737	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	13903927	13904250	AT1TE45625	.	+	ATDNA1T9A	MuDR	DNA	323	short	36	low	607472	pericentromeric	3695	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13904683	13905141	AT1TE45630	.	+	ARNOLDY1	MuDR	DNA	458	short	237	high	606581	pericentromeric	4451	PolIV-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	13904812	13904328	-	transcript_id-"574662fe-2694-4cdf-b50f-829a66ec2cfb|7"
Chr1	13905141	13906966	AT1TE45635	.	+	ARNOLDY1	MuDR	DNA	1825	short	237	high	604756	pericentromeric	4170	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13906967	13907589	AT1TE45640	.	+	ARNOLDY2	MuDR	DNA	623	short	288	high	604133	pericentromeric	3547	.	.	.	.	.	.	.
Chr1	13907590	13907639	AT1TE45645	.	+	ARNOLDY1	MuDR	DNA	50	tiny	237	high	604083	pericentromeric	3497	.	.	.	.	.	.	.
Chr1	13908019	13908132	AT1TE45650	.	-	HELITRONY3A	Helitron	RC	113	short	49	low	603590	pericentromeric	3004	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13908132	13908679	AT1TE45655	.	-	ATHPOGON1	Pogo	DNA	547	short	174	medium	603043	pericentromeric	2457	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13908679	13908729	AT1TE45660	.	-	HELITRONY3	Helitron	RC	50	tiny	1399	high	602993	pericentromeric	2407	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr1	13908905	13910793	AT1TE45665	.	-	Unassigned	.	Unassigned	1888	short	.	low	600929	pericentromeric	343	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13912833	13913517	AT1TE45670	.	+	ATHILA3	Gypsy	LTR	684	short	243	high	598205	pericentromeric	1154	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	13913517	13913787	AT1TE45675	.	+	ATHILA6A	Gypsy	LTR	270	short	247	high	597935	pericentromeric	1838	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	13913795	13915110	AT1TE45680	.	+	ATHILA0_I	Gypsy	LTR	1315	short	138	medium	596612	pericentromeric	2116	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	13914687	13914719	AT1TE45685	.	+	ATHILA	Gypsy	LTR	32	tiny	198	medium	597003	pericentromeric	2611	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	13915110	13915199	AT1TE45690	.	+	ATHILA5	Gypsy	LTR	89	tiny	131	medium	596523	pericentromeric	2131	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	13915199	13917482	AT1TE45695	.	+	ATHILA3	Gypsy	LTR	2283	medium	243	high	594240	pericentromeric	0	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	13917482	13917514	AT1TE45700	.	+	ATHILA3	Gypsy	LTR	32	tiny	243	high	594208	pericentromeric	0	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13917577	13919016	AT1TE45705	.	+	ATHILA3	Gypsy	LTR	1439	short	243	high	592706	pericentromeric	0	no-RdDM	no-RdDM	ExpressedAndAnnotated	13918022	13918758	+	transcript_id-"fb938f08-5d5a-470f-a784-3d881d6805de|3"
Chr1	13920721	13922110	AT1TE45710	.	-	ATHILA2	Gypsy	LTR	1389	short	413	high	589612	pericentromeric	2905	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13922110	13925068	AT1TE45715	.	+	ATHILA4	Gypsy	LTR	2958	medium	250	high	586654	pericentromeric	4294	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13925068	13928742	AT1TE45720	.	+	ATHILA4A	Gypsy	LTR	3674	medium	310	high	582980	pericentromeric	7252	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13926958	13926980	AT1TE45725	.	+	BRODYAGA1	MuDR	DNA	23	tiny	251	high	584742	pericentromeric	9141	.	.	.	.	.	.	.
Chr1	13926980	13928028	AT1TE45730	.	+	BRODYAGA1A	MuDR	DNA	1048	short	586	high	583694	pericentromeric	9164	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13928742	13935988	AT1TE45735	.	+	ATHILA4D_LTR	Gypsy	LTR	7246	long	106	medium	575734	pericentromeric	10926	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13929930	13930998	AT1TE45740	.	+	ATHILA4	Gypsy	LTR	1068	short	250	high	580724	pericentromeric	12114	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13931179	13931785	AT1TE45745	.	+	ATHILA4C	Gypsy	LTR	606	short	206	high	579937	pericentromeric	13363	RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr1	13931785	13934802	AT1TE45750	.	+	ATHILA4A	Gypsy	LTR	3017	medium	310	high	576920	pericentromeric	13969	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13933020	13933042	AT1TE45755	.	+	BRODYAGA1	MuDR	DNA	23	tiny	251	high	578680	pericentromeric	15203	.	.	.	.	.	.	.
Chr1	13933042	13934088	AT1TE45760	.	+	BRODYAGA1A	MuDR	DNA	1046	short	586	high	577634	pericentromeric	15226	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13935988	13936045	AT1TE45765	.	+	ATHILA4A	Gypsy	LTR	57	tiny	310	high	575677	pericentromeric	18172	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr1	13936045	13937056	AT1TE45770	.	+	ATHILA4	Gypsy	LTR	1011	short	250	high	574666	pericentromeric	18229	DCL3-RdDM	no-RdDM	.	.	.	.	.
Chr1	13937238	13937843	AT1TE45775	.	+	ATHILA4C	Gypsy	LTR	606	short	206	high	573879	pericentromeric	19421	.	.	.	.	.	.	.
Chr1	13937843	13939631	AT1TE45780	.	+	ATHILA4A	Gypsy	LTR	1788	short	310	high	572091	pericentromeric	20027	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13939977	13940762	AT1TE45785	.	+	ATENSPM2	En-Spm	DNA	785	short	114	medium	570960	pericentromeric	22161	no-RdDM	no-RdDM	ExpressedAndAnnotated	13940441	13940775	+	transcript_id-"545548d2-e965-4787-9858-403052faa83a|23"
Chr1	13940762	13947032	AT1TE45790	.	-	ATHILA6A	Gypsy	LTR	6270	long	247	high	564690	pericentromeric	22946	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	13941176,13946603,13946603	13940721,13946422,13946488	-,-,-	transcript_id-"16f61ffe-e37f-4ebb-a412-38b4d809448a|7",transcript_id-"f1d8e1c6-1815-495d-87dc-401c11103ec1|6",transcript_id-"29920e66-ddeb-4847-ad6c-7106e3f4b2e5|10"
Chr1	13947032	13950715	AT1TE45795	.	-	ATGP2	Gypsy	LTR	3683	medium	48	low	561007	pericentromeric	29216	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	13950717	13955653	AT1TE45800	.	-	ATLANTYS1	Gypsy	LTR	4936	medium	153	medium	556069	pericentromeric	27862	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	13955653	13959379	AT1TE45805	.	+	TA1-2	Copia	LTR	3726	medium	4	low	552343	pericentromeric	24136	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	13959379	13959418	AT1TE45810	.	+	ATCOPIA66	Copia	LTR	39	tiny	20	low	552304	pericentromeric	24097	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13959437	13961274	AT1TE45815	.	-	ATLANTYS1	Gypsy	LTR	1837	short	153	medium	550448	pericentromeric	22241	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13961274	13961618	AT1TE45820	.	-	ATHILA6A	Gypsy	LTR	344	short	247	high	550104	pericentromeric	21897	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	13961618	13961646	AT1TE45825	.	-	ATHILA	Gypsy	LTR	28	tiny	198	medium	550076	pericentromeric	21869	no-RdDM	no-CHH	.	.	.	.	.
Chr1	13964069	13964267	AT1TE45830	.	+	ATCOPIA54	Copia	LTR	198	short	18	low	547455	pericentromeric	19248	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	13964705	13964828	AT1TE45835	.	+	TNAT1A	.	DNA	123	short	162	medium	546894	pericentromeric	18687	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13966223	13966394	AT1TE45840	.	-	VANDAL3	MuDR	DNA	171	short	177	medium	545328	pericentromeric	17121	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	13966452	13967701	AT1TE45845	.	-	VANDAL3	MuDR	DNA	1249	short	177	medium	544021	pericentromeric	15814	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13967735	13968110	AT1TE45850	.	-	ATLINEIII	L1	LINE	375	short	196	medium	543612	pericentromeric	15405	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	13968110	13979022	AT1TE45855	.	-	ATLINE2	L1	LINE	10912	long	138	medium	532700	pericentromeric	4493	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	13971992	13974028	AT1TE45860	.	+	ATGP2N	Gypsy	LTR	2036	medium	54	medium	537694	pericentromeric	9487	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr1	13974816	13974845	AT1TE45865	.	-	ATENSPM5	En-Spm	DNA	29	tiny	111	medium	536877	pericentromeric	8670	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	13974845	13975522	AT1TE45870	.	-	ATENSPM9	En-Spm	DNA	677	short	97	medium	536200	pericentromeric	7993	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	13979028	13979086	AT1TE45880	.	-	ATREP11	Helitron	RC	58	tiny	841	high	532636	pericentromeric	4429	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13979217	13979451	AT1TE45885	.	-	ATDNAI27T9C	MuDR	DNA	234	short	108	medium	532271	pericentromeric	4064	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13979608	13979640	AT1TE45890	.	+	ATREP4	Helitron	RC	32	tiny	832	high	532082	pericentromeric	3875	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13979640	13981876	AT1TE45895	.	-	HELITRONY1E	Helitron	RC	2236	medium	447	high	529846	pericentromeric	1639	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	13981876	13981987	AT1TE45900	.	+	ATREP4	Helitron	RC	111	short	832	high	529735	pericentromeric	1528	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	13985696	13986104	AT1TE45910	.	+	BRODYAGA1A	MuDR	DNA	408	short	586	high	525618	pericentromeric	331	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	13989501	13989573	AT1TE45920	.	-	ATREP11	Helitron	RC	72	tiny	841	high	522149	pericentromeric	2212	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13990140	13990253	AT1TE45925	.	+	RathE3_cons	.	RathE3_cons	113	short	104	medium	521469	pericentromeric	2851	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13990253	13990465	AT1TE45930	.	+	ATREP7	Helitron	RC	212	short	164	medium	521257	pericentromeric	2964	no-RdDM	no-CHH	.	.	.	.	.
Chr1	13990465	13990499	AT1TE45935	.	+	ATREP8	Helitron	RC	34	tiny	75	medium	521223	pericentromeric	3176	no-RdDM	no-CHH	.	.	.	.	.
Chr1	13990556	13990642	AT1TE45940	.	+	ATMU1	MuDR	DNA	86	tiny	59	medium	521080	pericentromeric	3267	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	13991540	13991583	AT1TE45945	.	-	ATCOPIA29	Copia	LTR	43	tiny	19	low	520139	pericentromeric	4251	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	13991583	13991688	AT1TE45950	.	-	ATCOPIA28	Copia	LTR	105	short	81	medium	520034	pericentromeric	4294	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	13991688	13994017	AT1TE45955	.	-	ROMANIAT5	Copia	LTR	2329	medium	49	low	517705	pericentromeric	4399	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	13994017	13994948	AT1TE45960	.	-	ATCOPIA29	Copia	LTR	931	short	19	low	516774	pericentromeric	6728	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	13994948	13996527	AT1TE45965	.	-	ATHILA8B	Gypsy	LTR	1579	short	78	medium	515195	pericentromeric	7630	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	13996686	13998078	AT1TE45970	.	-	ATCOPIA28	Copia	LTR	1392	short	81	medium	513644	pericentromeric	6079	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	14001039	14002187	AT1TE45975	.	+	ATREP10D	Helitron	RC	1148	short	1295	high	509535	pericentromeric	1970	no-CHH	no-CHH	.	.	.	.	.
Chr1	14006700	14006832	AT1TE45985	.	+	ATDNA12T3_2	.	DNA	132	short	660	high	504890	pericentromeric	359	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	14006882	14007129	AT1TE45990	.	+	ATCOPIA12	Copia	LTR	247	short	15	low	504593	pericentromeric	541	no-CHH	no-CHH	.	.	.	.	.
Chr1	14007336	14007772	AT1TE45995	.	+	ATCOPIA13	Copia	LTR	436	short	35	low	503950	pericentromeric	995	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	14007781	14008008	AT1TE46000	.	-	ATHILA8B	Gypsy	LTR	227	short	78	medium	503714	pericentromeric	1440	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	14008088	14008253	AT1TE46005	.	-	ATHILA8B	Gypsy	LTR	165	short	78	medium	503469	pericentromeric	1419	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	14008971	14009000	AT1TE46010	.	-	ARNOLDY2	MuDR	DNA	29	tiny	288	high	502722	pericentromeric	672	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	14009000	14009082	AT1TE46015	.	-	HELITRONY1D	Helitron	RC	82	tiny	756	high	502640	pericentromeric	590	no-CHH	no-CHH	.	.	.	.	.
Chr1	14009082	14009712	AT1TE46020	.	+	HELITRONY1D	Helitron	RC	630	short	756	high	502010	pericentromeric	0	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr1	14009712	14010075	AT1TE46025	.	-	ARNOLDY2	MuDR	DNA	363	short	288	high	501647	pericentromeric	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	14011339	14014304	AT1TE46030	.	-	ATREP11	Helitron	RC	2965	medium	841	high	497418	pericentromeric	491	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	14014304	14014694	AT1TE46035	.	-	HELITRONY3	Helitron	RC	390	short	1399	high	497028	pericentromeric	101	no-RdDM	no-CHH	.	.	.	.	.
Chr1	14014694	14014744	AT1TE46040	.	-	ATREP3	Helitron	RC	50	tiny	1439	high	496978	pericentromeric	51	no-CHH	no-CHH	.	.	.	.	.
Chr1	14017756	14018356	AT1TE46045	.	+	VANDAL4	MuDR	DNA	600	short	102	medium	493366	pericentromeric	0	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	14018606	14018980	AT1TE46050	.	+	ATREP3	Helitron	RC	374	short	1439	high	492742	pericentromeric	250	no-CHH	no-CHH	.	.	.	.	.
Chr1	14018980	14019169	AT1TE46055	.	+	BRODYAGA1A	MuDR	DNA	189	short	586	high	492553	pericentromeric	624	no-CHH	no-CHH	.	.	.	.	.
Chr1	14019169	14019203	AT1TE46060	.	-	BRODYAGA1A	MuDR	DNA	34	tiny	586	high	492519	pericentromeric	813	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr1	14021369	14024147	AT1TE46065	.	+	ATGP3	Gypsy	LTR	2778	medium	60	medium	487575	pericentromeric	936	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	14024147	14024216	AT1TE46070	.	+	ATGP3	Gypsy	LTR	69	tiny	60	medium	487506	pericentromeric	867	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	14027019	14027168	AT1TE46075	.	+	ATHAT1	HAT	DNA	149	short	105	medium	484554	pericentromeric	292	no-CHH	no-CHH	.	.	.	.	.
Chr1	14031013	14032112	AT1TE46085	.	+	ATREP3	Helitron	RC	1099	short	1439	high	479610	pericentromeric	1302	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	14032113	14032437	AT1TE46090	.	-	ATENSPM3	En-Spm	DNA	325	short	98	medium	479285	pericentromeric	2401	.	.	.	.	.	.	.
Chr1	14033277	14038199	AT1TE46095	.	-	ATREP3	Helitron	RC	4922	medium	1439	high	473523	pericentromeric	0	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	14034542	14034702	AT1TE46100	.	+	ATREP4	Helitron	RC	160	short	832	high	477020	pericentromeric	1335	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	14042046	14042700	AT1TE46120	.	-	META1	Copia	LTR	654	short	138	medium	469022	pericentromeric	819	no-RdDM	no-CHH	.	.	.	.	.
Chr1	14042700	14042774	AT1TE46125	.	-	ATHPOGON3	Pogo	DNA	74	tiny	118	medium	468948	pericentromeric	1473	no-CHH	no-CHH	.	.	.	.	.
Chr1	14043264	14043720	AT1TE46130	.	-	ATENSPM2	En-Spm	DNA	456	short	114	medium	468002	pericentromeric	2037	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	14043720	14043937	AT1TE46135	.	-	ATDNA2T9B	MuDR	DNA	217	short	26	low	467785	pericentromeric	2493	no-RdDM	no-CHH	.	.	.	.	.
Chr1	14044361	14045934	AT1TE46140	.	+	ATHILA	Gypsy	LTR	1573	short	198	medium	465788	pericentromeric	800	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr1	14045934	14046031	AT1TE46145	.	+	ATHILA2	Gypsy	LTR	97	tiny	413	high	465691	pericentromeric	703	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	14046609	14047062	AT1TE46150	.	-	VANDAL3	MuDR	DNA	453	short	177	medium	464660	pericentromeric	0	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	14049536	14049673	AT1TE46155	.	-	VANDAL3	MuDR	DNA	137	short	177	medium	462049	pericentromeric	0	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	14051942	14051977	AT1TE46160	.	+	ATDNA2T9C	MuDR	DNA	35	tiny	242	high	459745	pericentromeric	2200	no-RdDM	no-CHH	.	.	.	.	.
Chr1	14051977	14052576	AT1TE46165	.	+	ATREP15	Helitron	RC	599	short	1003	high	459146	pericentromeric	2235	no-RdDM	no-CHH	.	.	.	.	.
Chr1	14053504	14054914	AT1TE46170	.	+	ATLINE1_4	L1	LINE	1410	short	102	medium	456808	pericentromeric	3762	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	14054914	14054966	AT1TE46175	.	+	ATLINE1_6	L1	LINE	52	tiny	129	medium	456756	pericentromeric	5172	no-RdDM	no-CHH	.	.	.	.	.
Chr1	14056416	14058432	AT1TE46180	.	-	VANDAL3	MuDR	DNA	2016	medium	177	medium	453290	pericentromeric	6674	no-RdDM	no-CHH	.	.	.	.	.
Chr1	14059003	14059067	AT1TE46185	.	+	ROMANIAT5	Copia	LTR	64	tiny	49	low	452655	pericentromeric	9261	no-RdDM	no-CHH	.	.	.	.	.
Chr1	14059069	14060612	AT1TE46190	.	+	ATHILA2	Gypsy	LTR	1543	short	413	high	451110	pericentromeric	9327	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	14060612	14060828	AT1TE46195	.	-	ATENSPM2	En-Spm	DNA	216	short	114	medium	450894	pericentromeric	10870	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	14060828	14061200	AT1TE46200	.	-	ATCOPIA94	Copia	LTR	372	short	39	low	450522	pericentromeric	11086	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	14061487	14061769	AT1TE46205	.	-	ATHILA4C	Gypsy	LTR	282	short	206	high	449953	pericentromeric	11745	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	14062093	14062288	AT1TE46210	.	-	ATHILA4A	Gypsy	LTR	195	short	310	high	449434	pericentromeric	12351	no-RdDM	no-CHH	.	.	.	.	.
Chr1	14062306	14063914	AT1TE46215	.	+	ATHILA8A	Gypsy	LTR	1608	short	97	medium	447808	pericentromeric	12564	no-RdDM	no-CHH	.	.	.	.	.
Chr1	14064356	14067482	AT1TE46220	.	-	ATIS112A	Harbinger	DNA	3126	medium	173	medium	444240	pericentromeric	14614	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	14068804	14069019	AT1TE46225	.	-	BRODYAGA1A	MuDR	DNA	215	short	586	high	442703	pericentromeric	19062	RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr1	14069499	14070821	AT1TE46230	.	+	ATHAT1	HAT	DNA	1322	short	105	medium	440901	pericentromeric	19757	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	14070821	14075427	AT1TE46235	.	+	ATENSPM9	En-Spm	DNA	4606	medium	97	medium	436295	pericentromeric	21079	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	14074402	14074930	+	transcript_id-"a89f2f88-5076-4470-9887-5335fc2d4992|3"
Chr1	14075427	14075463	AT1TE46240	.	+	TAG2	HAT	DNA	36	tiny	86	medium	436259	pericentromeric	25685	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	14075463	14076385	AT1TE46245	.	+	ATHAT1	HAT	DNA	922	short	105	medium	435337	pericentromeric	25721	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	14076510	14076682	AT1TE46250	.	+	SIMPLEHAT2	HAT	DNA	172	short	73	medium	435040	pericentromeric	26768	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	14076942	14080234	AT1TE46255	.	-	ATHILA4A	Gypsy	LTR	3292	medium	310	high	431488	pericentromeric	27200	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	14080250	14082586	AT1TE46260	.	+	ATLINEIII	L1	LINE	2336	medium	196	medium	429136	pericentromeric	30508	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	14082586	14094068	AT1TE46265	.	+	ATHILA6B	Gypsy	LTR	11482	long	134	medium	417654	pericentromeric	32844	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	14090266,14090979	14093099,14091624	+,+	transcript_id-"3c24c193-2673-4a28-b8c5-2c9d0e4bf652|3",transcript_id-"72cfb0cc-de53-4fab-8015-667f995264a7|4"
Chr1	14094068	14097504	AT1TE46270	.	+	ATLINEIII	L1	LINE	3436	medium	196	medium	414218	pericentromeric	38908	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	14096703	14095641	-	transcript_id-"ab202c10-5730-4b48-8d99-334d5582996d|3"
Chr1	14095841	14096232	AT1TE46275	.	-	ATHAT1	HAT	DNA	391	short	105	medium	415490	pericentromeric	40180	no-RdDM	no-RdDM	ExpressedAndAnnotated	14096703	14095641	-	transcript_id-"ab202c10-5730-4b48-8d99-334d5582996d|3"
Chr1	14096232	14096296	AT1TE46280	.	-	ATHAT1	HAT	DNA	64	tiny	105	medium	415426	pericentromeric	40116	RDR6-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	14097504	14097525	AT1TE46285	.	+	ATLINEIII	L1	LINE	21	tiny	196	medium	414197	pericentromeric	38887	no-RdDM	no-CHH	.	.	.	.	.
Chr1	14097591	14097911	AT1TE46290	.	+	ATLINE1_3A	L1	LINE	320	short	160	medium	413811	pericentromeric	38501	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	14097911	14098542	AT1TE46295	.	-	ATHILA4A	Gypsy	LTR	631	short	310	high	413180	pericentromeric	37870	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	14098542	14098633	AT1TE46300	.	-	ATHILA3	Gypsy	LTR	91	tiny	243	high	413089	pericentromeric	37779	RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	14098633	14101812	AT1TE46305	.	-	ATHILA0_I	Gypsy	LTR	3179	medium	138	medium	409910	pericentromeric	34600	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	14100071	14099528	-	transcript_id-"28b10bd3-7cd6-4c33-a468-e890e9517aa7|3"
Chr1	14101822	14107573	AT1TE46310	.	-	ATHILA3	Gypsy	LTR	5751	long	243	high	404149	pericentromeric	28839	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr1	14102479	14102760	AT1TE46315	.	-	ATHILA0_I	Gypsy	LTR	281	short	138	medium	408962	pericentromeric	33652	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr1	14104485	14104536	AT1TE46320	.	-	ATHILA3	Gypsy	LTR	51	tiny	243	high	407186	pericentromeric	31876	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	14107573	14108708	AT1TE46325	.	-	ATHILA4A	Gypsy	LTR	1135	short	310	high	403014	pericentromeric	27704	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	14109013	14112560	AT1TE46330	.	-	ATIS112A	Harbinger	DNA	3547	medium	173	medium	399162	pericentromeric	23852	no-RdDM	no-RdDM	ExpressedAndAnnotated	14111867	14111218	-	transcript_id-"9515bca9-6c7b-4128-984b-3cdb9bb56329|5"
Chr1	14113718	14114341	AT1TE46335	.	-	ATHILA8A	Gypsy	LTR	623	short	97	medium	397381	pericentromeric	22071	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	14114368	14114464	AT1TE46340	.	-	ATHILA4C	Gypsy	LTR	96	tiny	206	high	397258	pericentromeric	21948	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	14114464	14114486	AT1TE46345	.	-	ATHILA4C	Gypsy	LTR	22	tiny	206	high	397236	pericentromeric	21926	no-RdDM	no-CHH	.	.	.	.	.
Chr1	14114770	14115220	AT1TE46350	.	-	ATHILA7	Gypsy	LTR	450	short	134	medium	396502	pericentromeric	21192	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	14116033	14116840	AT1TE46355	.	-	ATHILA6B	Gypsy	LTR	807	short	134	medium	394882	pericentromeric	19572	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	14117384	14117657	AT1TE46360	.	-	ATCOPIA94	Copia	LTR	273	short	39	low	394065	pericentromeric	18755	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	14117911	14118195	AT1TE46365	.	-	ATHILA4C	Gypsy	LTR	284	short	206	high	393527	pericentromeric	18217	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	14118613	14118975	AT1TE46370	.	-	ATENSPM2	En-Spm	DNA	362	short	114	medium	392747	pericentromeric	17437	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	14120422	14121025	AT1TE46375	.	+	Unassigned	.	Unassigned	603	short	.	low	390697	pericentromeric	15387	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	14121531	14121719	AT1TE46380	.	-	ATHILA2	Gypsy	LTR	188	short	413	high	390003	pericentromeric	14693	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	14121719	14125084	AT1TE46385	.	-	ATHILA2	Gypsy	LTR	3365	medium	413	high	386638	pericentromeric	11328	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	14125084	14127032	AT1TE46390	.	-	ATHILA6B	Gypsy	LTR	1948	short	134	medium	384690	pericentromeric	9380	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	14127034	14128352	AT1TE46395	.	-	ATHILA2	Gypsy	LTR	1318	short	413	high	383370	pericentromeric	8060	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	14129669	14129760	AT1TE46400	.	-	TA1-2	Copia	LTR	91	tiny	4	low	381962	pericentromeric	6652	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	14129760	14134840	AT1TE46405	.	-	ATCOPIA66	Copia	LTR	5080	long	20	low	376882	pericentromeric	1572	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	14130203	14129805	-	transcript_id-"a80fa436-44fb-43b0-ad2d-137e671e8f10|5"
Chr1	14139229	14139495	AT1TE46415	.	+	ATLINE1_2	L1	LINE	266	short	41	low	372227	pericentromeric	984	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	14139495	14139675	AT1TE46420	.	+	ATDNAI27T9C	MuDR	DNA	180	short	108	medium	372047	pericentromeric	1250	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	14139733	14139876	AT1TE46425	.	+	ATDNAI27T9A	MuDR	DNA	143	short	116	medium	371846	pericentromeric	1488	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	14140132	14140939	AT1TE46430	.	+	VANDAL4	MuDR	DNA	807	short	102	medium	370783	pericentromeric	1887	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	14144208	14144306	AT1TE46440	.	-	ATLINEIII	L1	LINE	98	tiny	196	medium	367416	pericentromeric	5963	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	14144306	14145694	AT1TE46445	.	-	ATLINE2	L1	LINE	1388	short	138	medium	366028	pericentromeric	6061	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	14146209	14146256	AT1TE46450	.	-	HELITRON2	Helitron	RC	47	tiny	194	medium	365466	pericentromeric	7964	no-RdDM	no-CHH	.	.	.	.	.
Chr1	14146256	14147510	AT1TE46455	.	-	ATREP4	Helitron	RC	1254	short	832	high	364212	pericentromeric	8011	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	14147510	14147543	AT1TE46460	.	-	ATREP10A	Helitron	RC	33	tiny	279	high	364179	pericentromeric	9265	no-CHH	no-CHH	.	.	.	.	.
Chr1	14150901	14151212	AT1TE46470	.	-	HELITRONY1D	Helitron	RC	311	short	756	high	360510	pericentromeric	7404	no-CHH	no-CHH	.	.	.	.	.
Chr1	14151221	14151753	AT1TE46475	.	-	ATLINE1A	L1	LINE	532	short	289	high	359969	pericentromeric	6863	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	14151753	14152529	AT1TE46480	.	-	ATREP3	Helitron	RC	776	short	1439	high	359193	pericentromeric	6087	no-CHH	no-CHH	.	.	.	.	.
Chr1	14152940	14153264	AT1TE46485	.	+	ATDNA12T3_2	.	DNA	325	short	660	high	358458	pericentromeric	5352	.	.	.	.	.	.	.
Chr1	14153456	14154863	AT1TE46490	.	+	ATREP4	Helitron	RC	1407	short	832	high	356859	pericentromeric	3753	no-CHH	no-CHH	.	.	.	.	.
Chr1	14156209	14157394	AT1TE46495	.	-	ATREP6	Helitron	RC	1185	short	181	medium	354328	pericentromeric	1222	no-CHH	no-CHH	.	.	.	.	.
Chr1	14157394	14158404	AT1TE46500	.	+	ATREP10D	Helitron	RC	1010	short	1295	high	353318	pericentromeric	212	no-CHH	no-CHH	.	.	.	.	.
Chr1	14162168	14163600	AT1TE46510	.	+	ATREP4	Helitron	RC	1432	short	832	high	348122	pericentromeric	516	no-CHH	no-CHH	.	.	.	.	.
Chr1	14163338	14163545	AT1TE46515	.	+	ATDNATA1	Mariner	DNA	207	short	28	low	348177	pericentromeric	1686	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	14165866	14166066	AT1TE46520	.	+	RathE3_cons	.	RathE3_cons	200	short	104	medium	345656	pericentromeric	4214	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	14166588	14167105	AT1TE46525	.	-	HELITRONY3	Helitron	RC	517	short	1399	high	344617	pericentromeric	3245	no-CHH	no-CHH	.	.	.	.	.
Chr1	14167105	14167369	AT1TE46530	.	-	DT1	Mariner	DNA	264	short	123	medium	344353	pericentromeric	2981	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	14167369	14167481	AT1TE46535	.	+	ATREP10D	Helitron	RC	112	short	1295	high	344241	pericentromeric	2869	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	14167481	14169076	AT1TE46540	.	+	HELITRONY1D	Helitron	RC	1595	short	756	high	342646	pericentromeric	1274	no-CHH	no-CHH	.	.	.	.	.
Chr1	14169505	14169611	AT1TE46545	.	+	RathE1_cons	.	RathE1_cons	106	short	213	high	342111	pericentromeric	739	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	14170848	14171086	AT1TE46550	.	-	HARBINGER	Harbinger	DNA	238	short	90	medium	340636	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	14177933	14178066	AT1TE46570	.	-	ATHILA2	Gypsy	LTR	133	short	413	high	333656	pericentromeric	835	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	14178068	14183542	AT1TE46575	.	-	ATHILA2	Gypsy	LTR	5474	long	413	high	328180	pericentromeric	970	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	14181070	14179025	-	transcript_id-"ce52ce6c-5abd-409a-b7d9-d6ff34e77f88|8"
Chr1	14183542	14183631	AT1TE46580	.	-	ATHILA2	Gypsy	LTR	89	tiny	413	high	328091	pericentromeric	1117	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	14183784	14183995	AT1TE46585	.	-	ATHILA2	Gypsy	LTR	211	short	413	high	327727	pericentromeric	753	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	14185172	14185426	AT1TE46590	.	-	HARBINGER	Harbinger	DNA	254	short	90	medium	326296	pericentromeric	319	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	14185990	14186048	AT1TE46595	.	-	VANDAL7	MuDR	DNA	58	tiny	36	low	325674	pericentromeric	1137	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	14186048	14186771	AT1TE46600	.	-	ATREP1	Helitron	RC	723	short	498	high	324951	pericentromeric	1195	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	14186771	14186795	AT1TE46605	.	-	HELITRONY3	Helitron	RC	24	tiny	1399	high	324927	pericentromeric	1918	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	14186799	14187334	AT1TE46610	.	-	VANDAL7	MuDR	DNA	535	short	36	low	324388	pericentromeric	1946	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	14187334	14187468	AT1TE46615	.	+	VANDAL7	MuDR	DNA	134	short	36	low	324254	pericentromeric	2481	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	14187557	14188058	AT1TE46620	.	+	VANDAL7	MuDR	DNA	501	short	36	low	323664	pericentromeric	2704	PolIV-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	14188116	14193130	AT1TE46625	.	+	VANDAL8	MuDR	DNA	5014	long	123	medium	318592	pericentromeric	3263	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	14193584	14194819	AT1TE46630	.	-	Unassigned	.	Unassigned	1235	short	.	low	316903	pericentromeric	8731	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	14196922	14206946	AT1TE46635	.	-	ATLANTYS1	Gypsy	LTR	10024	long	153	medium	304776	pericentromeric	12069	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	14197389,14199654	14200167,14200186	+,+	transcript_id-"ecf18cd4-7d2c-49b6-bbcf-fa546b8ece4b|3",transcript_id-"18c02cbe-9a36-4850-be53-388d1e04c216|6"
Chr1	14207138	14208348	AT1TE46640	.	+	ATHILA4	Gypsy	LTR	1210	short	250	high	303374	pericentromeric	22285	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	14208773	14211194	AT1TE46645	.	+	ATHILA4	Gypsy	LTR	2421	medium	250	high	300528	pericentromeric	23920	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	14211194	14212645	AT1TE46650	.	+	ATHILA4A	Gypsy	LTR	1451	short	310	high	299077	pericentromeric	26341	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	14212645	14212686	AT1TE46655	.	+	ATHILA4B_LTR	Gypsy	LTR	41	tiny	143	medium	299036	pericentromeric	27792	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	14212698	14214745	AT1TE46660	.	+	VANDAL3	MuDR	DNA	2047	medium	177	medium	296977	pericentromeric	27845	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	14214746	14225656	AT1TE46665	.	-	ATHILA3	Gypsy	LTR	10910	long	243	high	286066	pericentromeric	29893	no-RdDM	no-RdDM	ExpressedAndAnnotated	14220286,14217750,14217736	14215667,14217170,14217561	-,-,-	transcript_id-"53a2c334-fc64-4f82-99fc-8600a5b78aae|4",transcript_id-"961734f1-6578-4f68-bc77-dbd9aef235a9|62",transcript_id-"6e72eaa2-54b0-458e-94db-c93227fc68d7|14"
Chr1	14222135	14222170	AT1TE46670	.	-	ATHILA3	Gypsy	LTR	35	tiny	243	high	289552	pericentromeric	37282	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	14225656	14226700	AT1TE46680	.	+	VANDAL3	MuDR	DNA	1044	short	177	medium	285022	pericentromeric	40803	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	14226700	14230059	AT1TE46685	.	+	ATHILA2	Gypsy	LTR	3359	medium	413	high	281663	pericentromeric	41847	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	14230070	14242310	AT1TE46690	.	+	ATHILA7	Gypsy	LTR	12240	long	134	medium	269412	pericentromeric	45217	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr1	14231221	14231243	AT1TE46695	.	+	ATHILA4C	Gypsy	LTR	22	tiny	206	high	280479	pericentromeric	46368	no-RdDM	no-CHH	.	.	.	.	.
Chr1	14232763	14235750	AT1TE46700	.	+	ATHILA	Gypsy	LTR	2987	medium	198	medium	275972	pericentromeric	47910	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr1	14233182	14233216	AT1TE46705	.	+	ATHILA	Gypsy	LTR	35	tiny	198	medium	278506	pericentromeric	48328	.	.	LowExpressed	.	.	.	.
Chr1	14235750	14236844	AT1TE46710	.	+	ATHILA6B	Gypsy	LTR	1094	short	134	medium	274878	pericentromeric	50897	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	14236844	14237008	AT1TE46715	.	+	ATHILA2	Gypsy	LTR	164	short	413	high	274714	pericentromeric	51991	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	14237008	14237028	AT1TE46720	.	+	ATHILA2	Gypsy	LTR	20	tiny	413	high	274694	pericentromeric	52155	no-RdDM	no-CHH	.	.	.	.	.
Chr1	14237028	14237449	AT1TE46725	.	+	ATHILA	Gypsy	LTR	421	short	198	medium	274273	pericentromeric	52175	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	14237449	14237483	AT1TE46730	.	+	ATHILA2	Gypsy	LTR	34	tiny	413	high	274239	pericentromeric	52422	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	14237573	14241004	AT1TE46735	.	+	ATHILA	Gypsy	LTR	3431	medium	198	medium	270718	pericentromeric	48901	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	14241006	14241178	AT1TE46740	.	+	ATHILA6B	Gypsy	LTR	172	short	134	medium	270544	pericentromeric	48727	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	14241178	14241202	AT1TE46745	.	+	ATHILA6A	Gypsy	LTR	24	tiny	247	high	270520	pericentromeric	48703	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	14242310	14242403	AT1TE46750	.	+	ATHILA6B	Gypsy	LTR	93	tiny	134	medium	269319	pericentromeric	47502	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	14242403	14248337	AT1TE46755	.	+	ATHILA2	Gypsy	LTR	5934	long	413	high	263385	pericentromeric	41568	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	14246459	14247317	+	transcript_id-"370946e1-ad38-4314-a365-09ad98bb7cda|3"
Chr1	14248337	14248936	AT1TE46760	.	+	ATHILA2	Gypsy	LTR	599	short	413	high	262786	pericentromeric	40969	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	14248936	14255843	AT1TE46765	.	+	ATHILA2	Gypsy	LTR	6907	long	413	high	255879	pericentromeric	34062	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	14255843	14257875	AT1TE46770	.	-	ATHILA2	Gypsy	LTR	2032	medium	413	high	253847	pericentromeric	32030	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	14257875	14259091	AT1TE46775	.	-	ATHILA6B	Gypsy	LTR	1216	short	134	medium	252631	pericentromeric	30814	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	14259091	14261082	AT1TE46780	.	-	ATHILA2	Gypsy	LTR	1991	short	413	high	250640	pericentromeric	28823	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	14261082	14261587	AT1TE46785	.	+	ATHILA0_I	Gypsy	LTR	505	short	138	medium	250135	pericentromeric	28318	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	14261587	14262179	AT1TE46790	.	-	ATHILA2	Gypsy	LTR	592	short	413	high	249543	pericentromeric	27726	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	14262179	14263528	AT1TE46795	.	+	ATENSPM5	En-Spm	DNA	1349	short	111	medium	248194	pericentromeric	26377	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	14262630,14262632,14262633	14263026,14263731,14263731	+,+,+	transcript_id-"71958d44-7221-4501-9b2a-522c93ee0fd3|8",transcript_id-"cb6b3eac-364e-4e48-bdc1-cd2e8aea06f6|10",transcript_id-"07435364-34cf-4c11-a180-a4d109d5e864|4"
Chr1	14263528	14263551	AT1TE46800	.	-	ATHILA3	Gypsy	LTR	23	tiny	243	high	248171	pericentromeric	26354	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	14263551	14273951	AT1TE46805	.	-	ATHILA3	Gypsy	LTR	10400	long	243	high	237771	pericentromeric	15954	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	14262633,14263566,14266383	14263731,14263790,14265816	+,+,-	transcript_id-"07435364-34cf-4c11-a180-a4d109d5e864|4",transcript_id-"95857273-caf4-432b-af0b-c8fa8b13ab81|4",transcript_id-"2d9fc15d-8e91-42ae-acea-94c11e6c8578|8"
Chr1	14267045	14268443	AT1TE46810	.	-	ATHILA3	Gypsy	LTR	1398	short	243	high	243279	pericentromeric	21462	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	14268443	14268476	AT1TE46815	.	-	ATHILA3	Gypsy	LTR	33	tiny	243	high	243246	pericentromeric	21429	no-RdDM	no-CHH	.	.	.	.	.
Chr1	14273955	14277544	AT1TE46825	.	+	VANDAL3	MuDR	DNA	3589	medium	177	medium	234178	pericentromeric	12361	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr1	14277550	14282138	AT1TE46830	.	-	HELITRON4	Helitron	RC	4588	medium	199	medium	229584	pericentromeric	7767	no-RdDM	no-RdDM	ExpressedAndAnnotated	14279207,14282417	14278634,14281073	-,-	transcript_id-"705920e6-4d71-4a4a-821f-e213f23e6344|3",transcript_id-"19183a54-b507-4ff3-a450-4c778f8cceb3|3"
Chr1	14280174	14281809	AT1TE46835	.	-	ATHILA0_I	Gypsy	LTR	1635	short	138	medium	229913	pericentromeric	8096	no-RdDM	no-RdDM	ExpressedAndAnnotated	14282417	14281073	-	transcript_id-"19183a54-b507-4ff3-a450-4c778f8cceb3|3"
Chr1	14282299	14282371	AT1TE46840	.	-	ATLANTYS3	Gypsy	LTR	72	tiny	142	medium	229351	pericentromeric	7534	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	14282412	14282638	AT1TE46845	.	-	ATLANTYS2	Gypsy	LTR	226	short	179	medium	229084	pericentromeric	7267	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	14282908	14283310	AT1TE46850	.	-	ATLANTYS2	Gypsy	LTR	402	short	179	medium	228412	pericentromeric	6595	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	14286369	14286439	AT1TE46860	.	-	ATLANTYS3	Gypsy	LTR	70	tiny	142	medium	225283	pericentromeric	3466	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	14286479	14286705	AT1TE46865	.	-	ATLANTYS2	Gypsy	LTR	226	short	179	medium	225017	pericentromeric	3200	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	14287084	14287757	AT1TE46870	.	-	HELITRON4	Helitron	RC	673	short	199	medium	223965	pericentromeric	2148	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr1	14287757	14287788	AT1TE46875	.	+	BRODYAGA1	MuDR	DNA	31	tiny	251	high	223934	pericentromeric	2117	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	14287803	14288391	AT1TE46880	.	+	ATHATN1	HAT	DNA	588	short	69	medium	223331	pericentromeric	1514	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	14288391	14288858	AT1TE46885	.	+	HELITRONY1D	Helitron	RC	467	short	756	high	222864	pericentromeric	1047	no-CHH	no-CHH	.	.	.	.	.
Chr1	14289036	14289526	AT1TE46890	.	+	ATHATN1	HAT	DNA	491	short	69	medium	222196	pericentromeric	379	.	.	.	.	.	.	.
Chr1	14289527	14289577	AT1TE46895	.	+	ATHATN1	HAT	DNA	51	tiny	69	medium	222145	pericentromeric	328	.	.	.	.	.	.	.
Chr1	14292522	14293012	AT1TE46900	.	+	ATHATN1	HAT	DNA	491	short	69	medium	218710	pericentromeric	379	.	.	.	.	.	.	.
Chr1	14293013	14293069	AT1TE46905	.	+	ATHATN1	HAT	DNA	57	tiny	69	medium	218653	pericentromeric	322	.	.	.	.	.	.	.
Chr1	14296179	14296518	AT1TE46915	.	-	HELITRONY3	Helitron	RC	339	short	1399	high	215204	pericentromeric	159	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	14296518	14296549	AT1TE46920	.	-	ATREP10B	Helitron	RC	31	tiny	491	high	215173	pericentromeric	498	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	14296549	14297935	AT1TE46925	.	-	ATREP10A	Helitron	RC	1386	short	279	high	213787	pericentromeric	529	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	14297935	14297991	AT1TE46930	.	-	ATREP10B	Helitron	RC	56	tiny	491	high	213731	pericentromeric	1915	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	14297992	14298031	AT1TE46935	.	-	ATREP10C	Helitron	RC	40	tiny	123	medium	213691	pericentromeric	1971	.	.	.	.	.	.	.
Chr1	14298031	14298666	AT1TE46940	.	+	ATHATN7	HAT	DNA	635	short	71	medium	213056	pericentromeric	2011	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	14298666	14298785	AT1TE46945	.	-	ATREP10A	Helitron	RC	119	short	279	high	212937	pericentromeric	2646	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	14298785	14300271	AT1TE46950	.	-	ATREP3	Helitron	RC	1486	short	1439	high	211451	pericentromeric	2765	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	14300271	14300406	AT1TE46955	.	-	HELITRONY1E	Helitron	RC	135	short	447	high	211316	pericentromeric	4251	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	14301648	14302414	AT1TE46960	.	+	ATENSPM9	En-Spm	DNA	766	short	97	medium	209308	pericentromeric	5628	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	14302414	14302447	AT1TE46965	.	+	ATENSPM9	En-Spm	DNA	33	tiny	97	medium	209275	pericentromeric	6394	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	14302526	14302868	AT1TE46970	.	+	ATENSPM9	En-Spm	DNA	342	short	97	medium	208854	pericentromeric	6506	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	14303209	14303324	AT1TE46975	.	+	ATREP10D	Helitron	RC	115	short	1295	high	208398	pericentromeric	7189	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	14303324	14303468	AT1TE46980	.	+	ATREP15	Helitron	RC	144	short	1003	high	208254	pericentromeric	7304	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	14303468	14303552	AT1TE46985	.	+	ATREP3	Helitron	RC	84	tiny	1439	high	208170	pericentromeric	7448	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	14303552	14305530	AT1TE46990	.	-	ATREP3	Helitron	RC	1978	short	1439	high	206192	pericentromeric	7532	no-CHH	no-CHH	.	.	.	.	.
Chr1	14307039	14307208	AT1TE46995	.	-	ATHAT1	HAT	DNA	169	short	105	medium	204514	pericentromeric	11019	PolIV-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	14308292	14308460	AT1TE47000	.	-	ATREP5	Helitron	RC	168	short	624	high	203262	pericentromeric	12272	no-CHH	no-CHH	.	.	.	.	.
Chr1	14308460	14309469	AT1TE47005	.	-	ATREP3	Helitron	RC	1009	short	1439	high	202253	pericentromeric	12440	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	14309469	14309681	AT1TE47010	.	+	ARNOLDY1	MuDR	DNA	212	short	237	high	202041	pericentromeric	13449	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	14309741	14310150	AT1TE47015	.	-	ATHILA4	Gypsy	LTR	409	short	250	high	201572	pericentromeric	13721	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	14310436	14311679	AT1TE47020	.	+	VANDAL3	MuDR	DNA	1243	short	177	medium	200043	pericentromeric	14416	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	14311679	14311722	AT1TE47025	.	+	VANDAL3	MuDR	DNA	43	tiny	177	medium	200000	pericentromeric	15659	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	14311722	14311841	AT1TE47030	.	+	VANDAL3	MuDR	DNA	119	short	177	medium	199881	pericentromeric	15702	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	14311850	14327652	AT1TE47035	.	+	ATHILA4C	Gypsy	LTR	15802	long	206	high	184070	pericentromeric	15830	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	14325417	14325786	+	transcript_id-"55c0f0c3-8f04-4919-b2a3-e2ea948f98dc|5"
Chr1	14312043	14312448	AT1TE47040	.	+	ATHILA4C	Gypsy	LTR	405	short	206	high	199274	pericentromeric	16023	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	14315152	14315189	AT1TE47045	.	+	ATHILA2	Gypsy	LTR	37	tiny	413	high	196533	pericentromeric	19132	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	14315189	14320850	AT1TE47050	.	+	ATHILA2	Gypsy	LTR	5661	long	413	high	190872	pericentromeric	19169	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	14327652	14327704	AT1TE47070	.	+	ATHILA4C	Gypsy	LTR	52	tiny	206	high	184018	pericentromeric	31632	no-RdDM	no-CHH	.	.	.	.	.
Chr1	14327707	14328119	AT1TE47075	.	+	VANDAL3	MuDR	DNA	412	short	177	medium	183603	pericentromeric	31687	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	14328155	14329803	AT1TE47080	.	+	ATHILA	Gypsy	LTR	1648	short	198	medium	181919	pericentromeric	32135	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	14330004	14330413	AT1TE47085	.	+	VANDAL3	MuDR	DNA	409	short	177	medium	181309	pericentromeric	33984	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	14330893	14330990	AT1TE47090	.	-	ATHILA6A	Gypsy	LTR	97	tiny	247	high	180732	pericentromeric	34873	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	14331004	14332548	AT1TE47095	.	-	ATHILA5	Gypsy	LTR	1544	short	131	medium	179174	pericentromeric	34984	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	14334054	14334330	AT1TE47100	.	-	HARBINGER	Harbinger	DNA	276	short	90	medium	177392	pericentromeric	38034	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	14334335	14340693	AT1TE47105	.	+	ATHILA2	Gypsy	LTR	6358	long	413	high	171029	pericentromeric	38315	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	14340694	14341290	AT1TE47110	.	+	ATHILA2	Gypsy	LTR	597	short	413	high	170432	pericentromeric	44673	.	.	.	.	.	.	.
Chr1	14341291	14341670	AT1TE47115	.	-	ATHILA4A	Gypsy	LTR	380	short	310	high	170052	pericentromeric	45270	.	.	.	.	.	.	.
Chr1	14341671	14341711	AT1TE47120	.	+	ATHILA0_I	Gypsy	LTR	41	tiny	138	medium	170011	pericentromeric	45650	.	.	.	.	.	.	.
Chr1	14341712	14344568	AT1TE47125	.	+	ATHILA3	Gypsy	LTR	2857	medium	243	high	167154	pericentromeric	45691	.	.	.	.	.	.	.
Chr1	14344642	14344834	AT1TE47130	.	+	ATHILA0_I	Gypsy	LTR	193	short	138	medium	166888	pericentromeric	48621	.	.	.	.	.	.	.
Chr1	14345242	14346432	AT1TE47135	.	+	ATHILA5	Gypsy	LTR	1191	short	131	medium	165290	pericentromeric	49221	.	.	.	.	.	.	.
Chr1	14346433	14346915	AT1TE47140	.	+	ATHILA5	Gypsy	LTR	483	short	131	medium	164807	pericentromeric	50412	.	.	.	.	.	.	.
Chr1	14346918	14349130	AT1TE47145	.	+	ATHILA3	Gypsy	LTR	2213	medium	243	high	162592	pericentromeric	50897	.	.	.	.	.	.	.
Chr1	14349623	14349676	AT1TE47150	.	+	ATHILA7	Gypsy	LTR	54	tiny	134	medium	162046	pericentromeric	53602	.	.	.	.	.	.	.
Chr1	14349677	14350162	AT1TE47155	.	+	ATHILA4D_LTR	Gypsy	LTR	486	short	106	medium	161560	pericentromeric	53656	.	.	.	.	.	.	.
Chr1	14350163	14350415	AT1TE47160	.	+	ATCOPIA94	Copia	LTR	253	short	39	low	161307	pericentromeric	54142	.	.	.	.	.	.	.
Chr1	14350416	14350625	AT1TE47165	.	+	ATHILA7A	Gypsy	LTR	210	short	31	low	161097	pericentromeric	54395	.	.	.	.	.	.	.
Chr1	14350868	14350911	AT1TE47170	.	+	ATHILA0_I	Gypsy	LTR	44	tiny	138	medium	160811	pericentromeric	54847	.	.	.	.	.	.	.
Chr1	14350912	14352041	AT1TE47175	.	+	ATHILA8B	Gypsy	LTR	1130	short	78	medium	159681	pericentromeric	54891	.	.	.	.	.	.	.
Chr1	14352046	14352150	AT1TE47180	.	+	ATHILA3	Gypsy	LTR	105	short	243	high	159572	pericentromeric	56025	.	.	.	.	.	.	.
Chr1	14352575	14352605	AT1TE47185	.	+	ATHILA6B	Gypsy	LTR	31	tiny	134	medium	159117	pericentromeric	56554	.	.	.	.	.	.	.
Chr1	14352606	14353475	AT1TE47190	.	+	ATHILA7	Gypsy	LTR	870	short	134	medium	158247	pericentromeric	56585	.	.	.	.	.	.	.
Chr1	14353180	14353977	AT1TE47195	.	+	ATHILA7A	Gypsy	LTR	798	short	31	low	157745	pericentromeric	57159	.	.	.	.	.	.	.
Chr1	14353978	14354438	AT1TE47200	.	+	ATHILA8A	Gypsy	LTR	461	short	97	medium	157284	pericentromeric	57957	.	.	.	.	.	.	.
Chr1	14354865	14354918	AT1TE47205	.	+	ATHILA7	Gypsy	LTR	54	tiny	134	medium	156804	pericentromeric	58844	.	.	.	.	.	.	.
Chr1	14354919	14355403	AT1TE47210	.	+	ATHILA4D_LTR	Gypsy	LTR	485	short	106	medium	156319	pericentromeric	58898	.	.	.	.	.	.	.
Chr1	14355404	14355644	AT1TE47215	.	+	ATCOPIA94	Copia	LTR	241	short	39	low	156078	pericentromeric	59383	.	.	.	.	.	.	.
Chr1	14355645	14356801	AT1TE47220	.	+	ATHILA3	Gypsy	LTR	1157	short	243	high	154921	pericentromeric	59624	.	.	.	.	.	.	.
Chr1	14356802	14357624	AT1TE47225	.	-	ATHILA4A	Gypsy	LTR	823	short	310	high	154098	pericentromeric	60781	.	.	.	.	.	.	.
Chr1	14357678	14358254	AT1TE47230	.	-	ATHILA4	Gypsy	LTR	577	short	250	high	153468	pericentromeric	61657	.	.	.	.	.	.	.
Chr1	14358255	14362049	AT1TE47235	.	-	ATHILA4	Gypsy	LTR	3795	medium	250	high	149673	pericentromeric	62234	.	.	.	.	.	.	.
Chr1	14359721	14360155	AT1TE47240	.	+	ATCOPIA69	Copia	LTR	435	short	25	low	151567	pericentromeric	63700	.	.	.	.	.	.	.
Chr1	14362050	14362267	AT1TE47245	.	-	ATHILA4B_LTR	Gypsy	LTR	218	short	143	medium	149455	pericentromeric	66029	.	.	.	.	.	.	.
Chr1	14364134	14364203	AT1TE47250	.	-	ATHILA2	Gypsy	LTR	70	tiny	413	high	147519	pericentromeric	68113	.	.	.	.	.	.	.
Chr1	14364204	14365893	AT1TE47255	.	+	ATHILA3	Gypsy	LTR	1690	short	243	high	145829	pericentromeric	68183	.	.	.	.	.	.	.
Chr1	14365895	14366400	AT1TE47260	.	-	ATHILA2	Gypsy	LTR	506	short	413	high	145322	pericentromeric	69874	.	.	.	.	.	.	.
Chr1	14366401	14367659	AT1TE47265	.	-	ATDNA12T3A	.	DNA	1259	short	22	low	144063	pericentromeric	70380	.	.	.	.	.	.	.
Chr1	14367378	14367466	AT1TE47270	.	-	ATDNA12T3A	.	DNA	89	tiny	22	low	144256	pericentromeric	71357	.	.	.	.	.	.	.
Chr1	14367660	14368377	AT1TE47275	.	-	ATLANTYS2	Gypsy	LTR	718	short	179	medium	143345	pericentromeric	71639	.	.	.	.	.	.	.
Chr1	14368381	14375118	AT1TE47280	.	+	ATHILA0_I	Gypsy	LTR	6738	long	138	medium	136604	pericentromeric	72360	.	.	.	.	.	.	.
Chr1	14375119	14375385	AT1TE47285	.	-	ATLANTYS2	Gypsy	LTR	267	short	179	medium	136337	pericentromeric	79098	.	.	.	.	.	.	.
Chr1	14375398	14375766	AT1TE47290	.	+	ATHILA0_I	Gypsy	LTR	369	short	138	medium	135956	pericentromeric	79377	.	.	.	.	.	.	.
Chr1	14375773	14377214	AT1TE47295	.	-	ATHILA2	Gypsy	LTR	1442	short	413	high	134508	pericentromeric	79752	.	.	.	.	.	.	.
Chr1	14379072	14379255	AT1TE47300	.	+	ATGP10	Gypsy	LTR	184	short	165	medium	132467	pericentromeric	83051	.	.	.	.	.	.	.
Chr1	14379492	14381177	AT1TE47305	.	-	ATHILA2	Gypsy	LTR	1686	short	413	high	130545	pericentromeric	83471	.	.	.	.	.	.	.
Chr1	14381353	14381662	AT1TE47310	.	+	VANDAL3	MuDR	DNA	310	short	177	medium	130060	pericentromeric	85332	.	.	.	.	.	.	.
Chr1	14381663	14383424	AT1TE47315	.	+	ATHILA4C	Gypsy	LTR	1762	short	206	high	128298	pericentromeric	85642	.	.	.	.	.	.	.
Chr1	14383425	14383837	AT1TE47320	.	-	ATHILA2	Gypsy	LTR	413	short	413	high	127885	pericentromeric	87404	.	.	.	.	.	.	.
Chr1	14383838	14384611	AT1TE47325	.	+	ATHILA2	Gypsy	LTR	774	short	413	high	127111	pericentromeric	87817	.	.	.	.	.	.	.
Chr1	14384612	14384991	AT1TE47330	.	-	ATHILA4A	Gypsy	LTR	380	short	310	high	126731	pericentromeric	88591	.	.	.	.	.	.	.
Chr1	14384992	14385032	AT1TE47335	.	+	ATHILA0_I	Gypsy	LTR	41	tiny	138	medium	126690	pericentromeric	88971	.	.	.	.	.	.	.
Chr1	14385032	14390221	AT1TE47340	.	+	ATHILA3	Gypsy	LTR	5189	long	243	high	121501	pericentromeric	89012	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr1	14388481	14388531	AT1TE47345	.	+	ATHILA0_I	Gypsy	LTR	50	tiny	138	medium	123191	pericentromeric	92461	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr1	14390295	14390487	AT1TE47350	.	+	ATHILA0_I	Gypsy	LTR	193	short	138	medium	121235	pericentromeric	94274	.	.	.	.	.	.	.
Chr1	14390895	14392085	AT1TE47355	.	+	ATHILA5	Gypsy	LTR	1191	short	131	medium	119637	pericentromeric	94874	.	.	.	.	.	.	.
Chr1	14392086	14392568	AT1TE47360	.	+	ATHILA5	Gypsy	LTR	483	short	131	medium	119154	pericentromeric	96065	.	.	.	.	.	.	.
Chr1	14392569	14394783	AT1TE47365	.	+	ATHILA3	Gypsy	LTR	2215	medium	243	high	116939	pericentromeric	96548	.	.	.	.	.	.	.
Chr1	14395276	14395329	AT1TE47370	.	+	ATHILA7	Gypsy	LTR	54	tiny	134	medium	116393	pericentromeric	99255	.	.	.	.	.	.	.
Chr1	14395330	14395815	AT1TE47375	.	+	ATHILA4D_LTR	Gypsy	LTR	486	short	106	medium	115907	pericentromeric	99309	.	.	.	.	.	.	.
Chr1	14395816	14396068	AT1TE47380	.	+	ATCOPIA94	Copia	LTR	253	short	39	low	115654	pericentromeric	99795	.	.	.	.	.	.	.
Chr1	14396069	14396278	AT1TE47385	.	+	ATHILA7A	Gypsy	LTR	210	short	31	low	115444	pericentromeric	100048	.	.	.	.	.	.	.
Chr1	14396521	14396564	AT1TE47390	.	+	ATHILA0_I	Gypsy	LTR	44	tiny	138	medium	115158	pericentromeric	100500	.	.	.	.	.	.	.
Chr1	14396565	14397694	AT1TE47395	.	+	ATHILA8B	Gypsy	LTR	1130	short	78	medium	114028	pericentromeric	100544	.	.	.	.	.	.	.
Chr1	14397699	14397803	AT1TE47400	.	+	ATHILA3	Gypsy	LTR	105	short	243	high	113919	pericentromeric	101678	.	.	.	.	.	.	.
Chr1	14398228	14398258	AT1TE47405	.	+	ATHILA6B	Gypsy	LTR	31	tiny	134	medium	113464	pericentromeric	102207	.	.	.	.	.	.	.
Chr1	14398259	14399128	AT1TE47410	.	+	ATHILA7	Gypsy	LTR	870	short	134	medium	112594	pericentromeric	102238	.	.	.	.	.	.	.
Chr1	14398833	14399630	AT1TE47415	.	+	ATHILA7A	Gypsy	LTR	798	short	31	low	112092	pericentromeric	102812	.	.	.	.	.	.	.
Chr1	14399631	14400091	AT1TE47420	.	+	ATHILA8A	Gypsy	LTR	461	short	97	medium	111631	pericentromeric	103610	.	.	.	.	.	.	.
Chr1	14400518	14400571	AT1TE47425	.	+	ATHILA7A	Gypsy	LTR	54	tiny	31	low	111151	pericentromeric	104497	.	.	.	.	.	.	.
Chr1	14400572	14401056	AT1TE47430	.	+	ATHILA4D_LTR	Gypsy	LTR	485	short	106	medium	110666	pericentromeric	104551	.	.	.	.	.	.	.
Chr1	14401057	14401297	AT1TE47435	.	+	ATCOPIA94	Copia	LTR	241	short	39	low	110425	pericentromeric	105036	.	.	.	.	.	.	.
Chr1	14401298	14402454	AT1TE47440	.	+	ATHILA0_I	Gypsy	LTR	1157	short	138	medium	109268	pericentromeric	105277	.	.	.	.	.	.	.
Chr1	14402455	14403277	AT1TE47445	.	-	ATHILA4A	Gypsy	LTR	823	short	310	high	108445	pericentromeric	106434	.	.	.	.	.	.	.
Chr1	14403331	14403907	AT1TE47450	.	-	ATHILA4	Gypsy	LTR	577	short	250	high	107815	pericentromeric	106976	.	.	.	.	.	.	.
Chr1	14403908	14407702	AT1TE47455	.	-	ATHILA4	Gypsy	LTR	3795	medium	250	high	104020	pericentromeric	103181	.	.	.	.	.	.	.
Chr1	14405374	14405808	AT1TE47460	.	+	ATCOPIA69	Copia	LTR	435	short	25	low	105914	pericentromeric	105075	.	.	.	.	.	.	.
Chr1	14407703	14407920	AT1TE47465	.	-	ATHILA4B_LTR	Gypsy	LTR	218	short	143	medium	103802	pericentromeric	102963	.	.	.	.	.	.	.
Chr1	14409787	14409856	AT1TE47470	.	-	ATHILA2	Gypsy	LTR	70	tiny	413	high	101866	pericentromeric	101027	.	.	.	.	.	.	.
Chr1	14409857	14411546	AT1TE47475	.	+	ATHILA3	Gypsy	LTR	1690	short	243	high	100176	pericentromeric	99337	.	.	.	.	.	.	.
Chr1	14411548	14412053	AT1TE47480	.	-	ATHILA2	Gypsy	LTR	506	short	413	high	99669	pericentromeric	98830	.	.	.	.	.	.	.
Chr1	14412054	14413312	AT1TE47485	.	-	ATDNA12T3A	.	DNA	1259	short	22	low	98410	pericentromeric	97571	.	.	.	.	.	.	.
Chr1	14413031	14413119	AT1TE47490	.	-	ATDNA12T3A	.	DNA	89	tiny	22	low	98603	pericentromeric	97764	.	.	.	.	.	.	.
Chr1	14413313	14414030	AT1TE47495	.	-	ATLANTYS2	Gypsy	LTR	718	short	179	medium	97692	pericentromeric	96853	.	.	.	.	.	.	.
Chr1	14414031	14420771	AT1TE47500	.	+	ATHILA0_I	Gypsy	LTR	6741	long	138	medium	90951	pericentromeric	90112	.	.	.	.	.	.	.
Chr1	14420772	14421038	AT1TE47505	.	-	ATLANTYS2	Gypsy	LTR	267	short	179	medium	90684	pericentromeric	89845	.	.	.	.	.	.	.
Chr1	14421051	14421419	AT1TE47510	.	+	ATHILA3	Gypsy	LTR	369	short	243	high	90303	pericentromeric	89464	.	.	.	.	.	.	.
Chr1	14421426	14422867	AT1TE47515	.	-	ATHILA2	Gypsy	LTR	1442	short	413	high	88855	pericentromeric	88016	.	.	.	.	.	.	.
Chr1	14424725	14424908	AT1TE47520	.	+	ATGP10	Gypsy	LTR	184	short	165	medium	86814	pericentromeric	85975	.	.	.	.	.	.	.
Chr1	14425145	14426830	AT1TE47525	.	-	ATHILA2	Gypsy	LTR	1686	short	413	high	84892	pericentromeric	84053	.	.	.	.	.	.	.
Chr1	14427006	14427315	AT1TE47530	.	+	VANDAL3	MuDR	DNA	310	short	177	medium	84407	pericentromeric	83568	.	.	.	.	.	.	.
Chr1	14427318	14427921	AT1TE47535	.	+	ATHILA4C	Gypsy	LTR	604	short	206	high	83801	pericentromeric	82962	.	.	.	.	.	.	.
Chr1	14427921	14449178	AT1TE47540	.	+	ATHILA4C	Gypsy	LTR	21257	long	206	high	62544	pericentromeric	61705	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	14429067	14430800	AT1TE47545	.	-	ATHILA2	Gypsy	LTR	1733	short	413	high	80922	pericentromeric	80083	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	14432222	14442952	AT1TE47550	.	+	ATHILA2	Gypsy	LTR	10730	long	413	high	68770	pericentromeric	67931	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	14442952	14442966	AT1TE47555	.	+	ATHILA2	Gypsy	LTR	14	tiny	413	high	68756	pericentromeric	67917	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	14449178	14451469	AT1TE47570	.	+	ATHILA2	Gypsy	LTR	2291	medium	413	high	60253	pericentromeric	59414	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	14451470	14451891	AT1TE47575	.	-	ATHILA4A	Gypsy	LTR	421	short	310	high	59831	pericentromeric	58992	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	14451910	14457104	AT1TE47580	.	+	ATHILA3	Gypsy	LTR	5194	long	243	high	54618	pericentromeric	53779	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr1	14455364	14455414	AT1TE47585	.	+	ATHILA0_I	Gypsy	LTR	50	tiny	138	medium	56308	pericentromeric	55469	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	14457178	14457370	AT1TE47590	.	+	ATHILA0_I	Gypsy	LTR	193	short	138	medium	54352	pericentromeric	53513	.	.	.	.	.	.	.
Chr1	14457777	14459459	AT1TE47595	.	+	ATHILA5	Gypsy	LTR	1682	short	131	medium	52263	pericentromeric	51424	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	14458838	14458884	AT1TE47600	.	+	ATHILA5	Gypsy	LTR	47	tiny	131	medium	52838	pericentromeric	51999	.	.	.	.	.	.	.
Chr1	14459459	14461676	AT1TE47605	.	+	ATHILA3	Gypsy	LTR	2217	medium	243	high	50046	pericentromeric	49207	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	14459820,14459820,14459835	14460402,14461087,14460009	+,+,+	transcript_id-"838dc329-4ab0-438a-a427-c5006420ec31|81",transcript_id-"42d1256d-2bfb-4b53-b83a-1d80152fe7c3|10",transcript_id-"b579a776-97e3-4617-90a7-3517e5c97850|5"
Chr1	14462781	14463254	AT1TE47610	.	+	ATHILA6B	Gypsy	LTR	473	short	134	medium	48468	pericentromeric	47629	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	14463362	14463466	AT1TE47615	.	+	ATHILA7A	Gypsy	LTR	104	short	31	low	48256	pericentromeric	47417	no-RdDM	no-CHH	.	.	.	.	.
Chr1	14463535	14463664	AT1TE47620	.	+	ATHILA4A	Gypsy	LTR	129	short	310	high	48058	pericentromeric	47219	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	14464099	14464209	AT1TE47625	.	+	ATHILA8A	Gypsy	LTR	110	short	97	medium	47513	pericentromeric	46674	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	14464209	14465550	AT1TE47630	.	+	ATHILA8A	Gypsy	LTR	1341	short	97	medium	46172	pericentromeric	45333	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	14466174	14466419	AT1TE47635	.	+	ATCOPIA94	Copia	LTR	245	short	39	low	45303	pericentromeric	44464	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	14466419	14467530	AT1TE47640	.	+	ATHILA3	Gypsy	LTR	1111	short	243	high	44192	pericentromeric	43353	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	14467537	14468313	AT1TE47645	.	-	ATHILA4A	Gypsy	LTR	776	short	310	high	43409	pericentromeric	42570	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	14468417	14468752	AT1TE47650	.	-	ATHILA4	Gypsy	LTR	335	short	250	high	42970	pericentromeric	42131	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	14468752	14472769	AT1TE47655	.	-	ATHILA4	Gypsy	LTR	4017	medium	250	high	38953	pericentromeric	38114	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	14470210	14470653	AT1TE47660	.	+	ATCOPIA69	Copia	LTR	443	short	25	low	41069	pericentromeric	40230	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	14474641	14474711	AT1TE47670	.	-	ATHILA2	Gypsy	LTR	70	tiny	413	high	37011	pericentromeric	36172	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	14474711	14476323	AT1TE47675	.	+	ATHILA3	Gypsy	LTR	1612	short	243	high	35399	pericentromeric	34560	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	14476324	14476830	AT1TE47680	.	-	ATHILA2	Gypsy	LTR	506	short	413	high	34892	pericentromeric	34053	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	14476830	14478089	AT1TE47685	.	-	ATDNA12T3A	.	DNA	1259	short	22	low	33633	pericentromeric	32794	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	14478089	14478727	AT1TE47690	.	-	ATLANTYS2	Gypsy	LTR	638	short	179	medium	32995	pericentromeric	32156	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	14478400,14478410	14478871,14478821	+,+	transcript_id-"387c96e2-1a93-4f26-9db8-130d27dfe917|4",transcript_id-"7ebe3c4b-54f8-43d0-b0a0-99a04a54a2fe|6"
Chr1	14478732	14478943	AT1TE47695	.	+	ATHILA3	Gypsy	LTR	211	short	243	high	32779	pericentromeric	31940	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	14478943	14480394	AT1TE47700	.	-	ATHILA2	Gypsy	LTR	1451	short	413	high	31328	pericentromeric	30489	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	14481778	14481962	AT1TE47705	.	+	ATGP10	Gypsy	LTR	184	short	165	medium	29760	pericentromeric	28921	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	14482198	14483890	AT1TE47710	.	-	ATHILA2	Gypsy	LTR	1692	short	413	high	27832	pericentromeric	26993	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	14484871	14486672	AT1TE47715	.	+	ATHILA8A	Gypsy	LTR	1801	short	97	medium	25050	pericentromeric	24211	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	14485450	14485631	+	transcript_id-"7791aa68-f143-49f3-a002-c67707670c62|7"
Chr1	14487436	14492869	AT1TE47720	.	+	ATHILA2	Gypsy	LTR	5433	long	413	high	18853	pericentromeric	18014	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	14488372	14489795	AT1TE47725	.	-	ATHILA2	Gypsy	LTR	1423	short	413	high	21927	pericentromeric	21088	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	14489796	14491652	AT1TE47730	.	+	ATHILA6A	Gypsy	LTR	1856	short	247	high	20070	pericentromeric	19231	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	14491670	14492096	AT1TE47735	.	-	ATHILA2	Gypsy	LTR	426	short	413	high	19626	pericentromeric	18787	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	14492882	14493182	AT1TE47740	.	+	ATHILA2	Gypsy	LTR	300	short	413	high	18540	pericentromeric	17701	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	14493182	14493851	AT1TE47745	.	+	ATHILA6A	Gypsy	LTR	669	short	247	high	17871	pericentromeric	17032	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	14493851	14498848	AT1TE47750	.	+	ATHILA2	Gypsy	LTR	4997	medium	413	high	12874	pericentromeric	12035	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	14493339	14498228	+	transcript_id-"f8a7bc64-ab92-4259-9599-8016acea02a2|3"
Chr1	14499145	14499172	AT1TE47755	.	+	ATHILA2	Gypsy	LTR	27	tiny	413	high	12550	pericentromeric	11711	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	14499172	14499493	AT1TE47760	.	+	ATHILA2	Gypsy	LTR	321	short	413	high	12229	pericentromeric	11390	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	14499493	14502836	AT1TE47765	.	+	ATHILA2	Gypsy	LTR	3343	medium	413	high	8886	pericentromeric	8047	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	14502836	14502952	AT1TE47770	.	+	ATHILA0_I	Gypsy	LTR	116	short	138	medium	8770	pericentromeric	7931	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	14503023	14504548	AT1TE47775	.	+	ATHILA6B	Gypsy	LTR	1525	short	134	medium	7174	pericentromeric	6335	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	14504548	14507555	AT1TE47780	.	+	ATHILA2	Gypsy	LTR	3007	medium	413	high	4167	pericentromeric	3328	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	14538941	14540986	AT1TE47880	.	-	ATGP7	Gypsy	LTR	2045	medium	47	low	0	pericentromeric	2290	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	14540050	14540097	AT1TE47885	.	-	ATGP6	Gypsy	LTR	47	tiny	25	low	0	pericentromeric	3179	no-RdDM	no-CHH	.	.	.	.	.
Chr1	14582193	14587448	AT1TE48020	.	-	ATHILA6A	Gypsy	LTR	5255	long	247	high	0	pericentromeric	403	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	14588168	14585528	-	transcript_id-"140df447-346b-4e26-85b9-010d96d9eb82|5"
Chr1	14587448	14588322	AT1TE48025	.	-	ATHILA6A	Gypsy	LTR	874	short	247	high	0	pericentromeric	0	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	14588473	14590167	AT1TE48030	.	-	ATHILA6B	Gypsy	LTR	1694	short	134	medium	0	pericentromeric	54	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	14590167	14598729	AT1TE48035	.	-	ATENSPM5	En-Spm	DNA	8562	long	111	medium	0	pericentromeric	1748	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	14593776,14595017	14590777,14594700	-,-	transcript_id-"fd9de8bb-2e9f-462c-becc-01050f558824|10",transcript_id-"ac1346c7-8205-4c34-afa0-ed5613f5aa86|4"
Chr1	14598729	14600111	AT1TE48040	.	-	ATENSPM6	En-Spm	DNA	1382	short	151	medium	0	pericentromeric	10310	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	14600111	14602815	AT1TE48045	.	+	ATLANTYS1	Gypsy	LTR	2704	medium	153	medium	0	pericentromeric	11692	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	14603198	14608644	AT1TE48050	.	-	HELITRONY2	Helitron	RC	5446	long	198	medium	0	pericentromeric	14779	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	14656722	14657163	AT1TE48210	.	-	HELITRON2	Helitron	RC	441	short	194	medium	0	pericentromeric	68303	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	14661763	14662282	AT1TE48220	.	-	ATHILA4B_LTR	Gypsy	LTR	520	short	143	medium	0	pericentromeric	73343	.	.	.	.	.	.	.
Chr1	14662283	14664772	AT1TE48225	.	-	ATHILA4	Gypsy	LTR	2490	medium	250	high	0	pericentromeric	73863	.	.	.	.	.	.	.
Chr1	14664772	14669652	AT1TE48230	.	-	ATHILA3	Gypsy	LTR	4880	medium	243	high	0	pericentromeric	76353	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	14673837	14674639	AT1TE48240	.	+	ATLANTYS2	Gypsy	LTR	803	short	179	medium	0	pericentromeric	85417	.	.	.	.	.	.	.
Chr1	14714186	14717295	AT1TE48370	.	+	ATHILA4	Gypsy	LTR	3109	medium	250	high	0	pericentromeric	125767	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	14717295	14717602	AT1TE48375	.	+	ATHILA4B_LTR	Gypsy	LTR	307	short	143	medium	0	pericentromeric	128876	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	14717602	14717861	AT1TE48380	.	+	ATHILA4B_LTR	Gypsy	LTR	259	short	143	medium	0	pericentromeric	129183	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	14746646	14747211	AT1TE48470	.	-	ATHILA4B_LTR	Gypsy	LTR	566	short	143	medium	0	pericentromeric	158226	.	.	.	.	.	.	.
Chr1	14747212	14750320	AT1TE48475	.	-	ATHILA4	Gypsy	LTR	3109	medium	250	high	0	pericentromeric	158792	.	.	.	.	.	.	.
Chr1	14750321	14750382	AT1TE48480	.	-	ATHILA4	Gypsy	LTR	62	tiny	250	high	0	pericentromeric	161901	.	.	.	.	.	.	.
Chr1	14805638	14816078	AT1TE48660	.	+	ATHILA6B	Gypsy	LTR	10440	long	134	medium	1668	pericentromeric	106344	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	14816079	14816620	AT1TE48665	.	+	ATHILA6A	Gypsy	LTR	542	short	247	high	12108	pericentromeric	105802	.	.	.	.	.	.	.
Chr1	14816664	14818335	AT1TE48670	.	+	ATENSPM11	En-Spm	DNA	1672	short	47	low	12693	pericentromeric	104087	.	.	.	.	.	.	.
Chr1	14818336	14818448	AT1TE48675	.	+	ATENSPM10	En-Spm	DNA	113	short	81	medium	14365	pericentromeric	103974	.	.	.	.	.	.	.
Chr1	14825165	14825220	AT1TE48690	.	-	ATHILA6A	Gypsy	LTR	56	tiny	247	high	21194	pericentromeric	97202	.	.	.	.	.	.	.
Chr1	14825236	14825643	AT1TE48695	.	-	Unassigned	.	Unassigned	408	short	.	low	21265	pericentromeric	96779	.	.	.	.	.	.	.
Chr1	14825788	14827235	AT1TE48700	.	-	ATHILA3	Gypsy	LTR	1448	short	243	high	21817	pericentromeric	95187	.	.	.	.	.	.	.
Chr1	14829785	14830590	AT1TE48705	.	+	ATLANTYS2	Gypsy	LTR	806	short	179	medium	25814	pericentromeric	91832	.	.	.	.	.	.	.
Chr1	14831876	14832919	AT1TE48710	.	+	VANDAL4	MuDR	DNA	1044	short	102	medium	27905	pericentromeric	89503	.	.	.	.	.	.	.
Chr1	14833150	14833179	AT1TE48715	.	-	ATHILA6A	Gypsy	LTR	30	tiny	247	high	29179	pericentromeric	89243	.	.	.	.	.	.	.
Chr1	14833179	14835287	AT1TE48720	.	-	ATHILA6A	Gypsy	LTR	2108	medium	247	high	29209	pericentromeric	87135	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	14835288	14835313	AT1TE48725	.	-	ATHILA6A	Gypsy	LTR	26	tiny	247	high	31317	pericentromeric	87109	.	.	.	.	.	.	.
Chr1	14837663	14845083	AT1TE48730	.	-	ATHILA3	Gypsy	LTR	7420	long	243	high	33693	pericentromeric	77339	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr1	14845083	14847384	AT1TE48735	.	-	ATHILA3	Gypsy	LTR	2301	medium	243	high	41113	pericentromeric	75038	no-RdDM	no-CHH	.	.	.	.	.
Chr1	14847385	14847791	AT1TE48740	.	-	ATHILA3	Gypsy	LTR	407	short	243	high	43414	pericentromeric	74631	.	.	.	.	.	.	.
Chr1	14847804	14857361	AT1TE48745	.	+	ATHILA	Gypsy	LTR	9557	long	198	medium	43834	pericentromeric	65061	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	14857362	14859911	AT1TE48750	.	-	ATHILA3	Gypsy	LTR	2550	medium	243	high	53391	pericentromeric	62511	.	.	.	.	.	.	.
Chr1	14862921	14863102	AT1TE48755	.	+	VANDAL5	MuDR	DNA	182	short	85	medium	58950	pericentromeric	59320	.	.	.	.	.	.	.
Chr1	14864081	14865438	AT1TE48760	.	+	ATHILA3	Gypsy	LTR	1357	short	243	high	60111	pericentromeric	56984	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	14865438	14874995	AT1TE48765	.	-	ATHILA	Gypsy	LTR	9557	long	198	medium	61468	pericentromeric	47427	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	14875009	14875415	AT1TE48770	.	+	ATHILA3	Gypsy	LTR	407	short	243	high	71038	pericentromeric	47007	.	.	.	.	.	.	.
Chr1	14875415	14885131	AT1TE48775	.	+	ATHILA3	Gypsy	LTR	9716	long	243	high	71445	pericentromeric	37291	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	14877738	14877922	AT1TE48780	.	+	ATHILA	Gypsy	LTR	184	short	198	medium	73768	pericentromeric	44500	no-CHH	no-RdDM	.	.	.	.	.
Chr1	14877935	14878008	AT1TE48785	.	+	ATHILA6A	Gypsy	LTR	73	tiny	247	high	73965	pericentromeric	44414	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	14891976	14897732	AT1TE48830	.	-	ATENSPM11	En-Spm	DNA	5756	long	47	low	88006	pericentromeric	24690	no-RdDM	no-RdDM	ExpressedAndAnnotated	14894049,14893883	14892304,14892318	-,-	transcript_id-"d0dcfff8-5ac3-423d-b157-0df64ffb4c22|4",transcript_id-"363083cc-8bc4-4fdc-9853-faecb30109f5|6"
Chr1	14897775	14908757	AT1TE48835	.	-	ATHILA6B	Gypsy	LTR	10982	long	134	medium	93805	pericentromeric	13665	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	14908758	14908785	AT1TE48840	.	-	ATHILA6A	Gypsy	LTR	28	tiny	247	high	104787	pericentromeric	13637	.	.	.	.	.	.	.
Chr1	14910723	14910878	AT1TE48845	.	+	ATHILA6A	Gypsy	LTR	156	short	247	high	106752	pericentromeric	11544	.	.	.	.	.	.	.
Chr1	14910878	14912856	AT1TE48850	.	+	ATHILA6B	Gypsy	LTR	1978	short	134	medium	106908	pericentromeric	9566	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	14912857	14912886	AT1TE48855	.	+	ATHILA6A	Gypsy	LTR	30	tiny	247	high	108886	pericentromeric	9536	.	.	LowExpressed	.	.	.	.
Chr1	14913116	14914150	AT1TE48860	.	-	VANDAL4	MuDR	DNA	1034	short	102	medium	109146	pericentromeric	8272	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	14917331	14917353	AT1TE48870	.	+	VANDAL5	MuDR	DNA	23	tiny	85	medium	113360	pericentromeric	5069	.	.	.	.	.	.	.
Chr1	14917353	14917703	AT1TE48875	.	-	VANDAL4	MuDR	DNA	350	short	102	medium	113383	pericentromeric	4719	no-RdDM	no-CHH	.	.	.	.	.
Chr1	14918652	14919246	AT1TE48880	.	-	VANDAL5	MuDR	DNA	594	short	85	medium	114682	pericentromeric	3176	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	14919311	14919545	AT1TE48885	.	-	VANDAL4	MuDR	DNA	234	short	102	medium	115341	pericentromeric	2877	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	14922821	14923070	AT1TE48895	.	-	VANDAL4	MuDR	DNA	249	short	102	medium	118851	pericentromeric	0	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr1	14923438	14923605	AT1TE48900	.	+	ATREP18	.	DNA	167	short	391	high	119468	pericentromeric	383	no-RdDM	no-CHH	.	.	.	.	.
Chr1	14923605	14926963	AT1TE48905	.	+	ATHILA2	Gypsy	LTR	3358	medium	413	high	119635	pericentromeric	550	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	14998918	14999727	AT1TE49140	.	-	ATREP10D	Helitron	RC	809	short	1295	high	194948	pericentromeric	75863	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	14999727	15000074	AT1TE49145	.	+	HELITRONY1E	Helitron	RC	347	short	447	high	195757	pericentromeric	76672	no-RdDM	no-CHH	.	.	.	.	.
Chr1	15006088	15007723	AT1TE49155	.	-	ATENSPM11	En-Spm	DNA	1635	short	47	low	202118	pericentromeric	74228	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15007723	15008049	AT1TE49160	.	-	ATENSPM6	En-Spm	DNA	326	short	151	medium	203753	pericentromeric	73902	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	15008629	15009556	AT1TE49165	.	+	ATREP3	Helitron	RC	927	short	1439	high	204659	pericentromeric	72395	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	15009556	15009586	AT1TE49170	.	-	HELITRONY3A	Helitron	RC	30	tiny	49	low	205586	pericentromeric	72365	no-CHH	no-CHH	.	.	.	.	.
Chr1	15038154	15052790	AT1TE49260	.	-	ATHILA6B	Gypsy	LTR	14636	long	134	medium	234184	pericentromeric	29161	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	15044351	15042183	-	transcript_id-"5b8d0e3e-82ad-4253-888a-043ce5c09973|11"
Chr1	15053676	15056565	AT1TE49265	.	+	VANDAL4	MuDR	DNA	2889	medium	102	medium	249706	pericentromeric	25386	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15056565	15056624	AT1TE49270	.	+	VANDAL5A	MuDR	DNA	59	tiny	56	medium	252595	pericentromeric	25327	no-RdDM	no-CHH	.	.	.	.	.
Chr1	15057045	15057068	AT1TE49275	.	-	VANDAL3	MuDR	DNA	23	tiny	177	medium	253075	pericentromeric	24883	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr1	15057068	15058248	AT1TE49280	.	-	VANDAL4	MuDR	DNA	1180	short	102	medium	253098	pericentromeric	23703	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15058248	15060097	AT1TE49285	.	-	ATREP18	.	DNA	1849	short	391	high	254278	pericentromeric	21854	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15060097	15060119	AT1TE49290	.	-	ATHILA5	Gypsy	LTR	22	tiny	131	medium	256127	pericentromeric	21832	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	15060126	15061270	AT1TE49295	.	-	ATHILA2	Gypsy	LTR	1144	short	413	high	256156	pericentromeric	20681	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	15061270	15069809	AT1TE49300	.	-	ATHILA2	Gypsy	LTR	8539	long	413	high	257300	pericentromeric	12142	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	15064781	15064842	AT1TE49305	.	-	ATHILA2	Gypsy	LTR	61	tiny	413	high	260811	pericentromeric	17109	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	15068998	15069139	AT1TE49315	.	-	ATHILA2	Gypsy	LTR	141	short	413	high	265028	pericentromeric	12812	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	15069809	15074155	AT1TE49320	.	-	ATHILA6B	Gypsy	LTR	4346	medium	134	medium	265839	pericentromeric	7796	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	15074169	15076081	AT1TE49325	.	-	ATHILA2	Gypsy	LTR	1912	short	413	high	270199	pericentromeric	5870	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	15078025	15075319	-	transcript_id-"9c9d9d3f-2d1d-4e33-bb3b-e89f2e918306|7"
Chr1	15076083	15078266	AT1TE49330	.	-	ATHILA6A	Gypsy	LTR	2183	medium	247	high	272113	pericentromeric	3685	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	15078025	15075319	-	transcript_id-"9c9d9d3f-2d1d-4e33-bb3b-e89f2e918306|7"
Chr1	15078266	15078560	AT1TE49335	.	-	ATHILA6B	Gypsy	LTR	294	short	134	medium	274296	pericentromeric	3391	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15078560	15078779	AT1TE49340	.	-	ATHILA6A	Gypsy	LTR	219	short	247	high	274590	pericentromeric	3172	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	15079960	15081161	AT1TE49345	.	+	VANDAL4	MuDR	DNA	1201	short	102	medium	275990	pericentromeric	790	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15081161	15081194	AT1TE49350	.	+	VANDAL4	MuDR	DNA	33	tiny	102	medium	277191	pericentromeric	757	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	15087256	15087580	AT1TE49360	.	+	ATENSPM9	En-Spm	DNA	324	short	97	medium	283286	pericentromeric	1363	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15087841	15087873	AT1TE49365	.	-	ATREP18	.	DNA	32	tiny	391	high	283871	pericentromeric	1948	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	15087873	15089939	AT1TE49370	.	-	ATREP18	.	DNA	2066	medium	391	high	283903	pericentromeric	1980	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15089939	15091579	AT1TE49375	.	-	ATREP18	.	DNA	1640	short	391	high	285969	pericentromeric	4046	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15090348	15090518	AT1TE49380	.	-	ATREP18	.	DNA	170	short	391	high	286378	pericentromeric	4455	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15091850	15093829	AT1TE49385	.	-	ATREP18	.	DNA	1979	short	391	high	287880	pericentromeric	5957	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15093010	15093355	AT1TE49390	.	-	ATREP18	.	DNA	345	short	391	high	289040	pericentromeric	7117	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15093829	15094043	AT1TE49395	.	-	ATREP18	.	DNA	214	short	391	high	289859	pericentromeric	7936	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15094043	15094069	AT1TE49400	.	-	ATREP18	.	DNA	26	tiny	391	high	290073	pericentromeric	8150	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	15094069	15095327	AT1TE49405	.	-	ATREP18	.	DNA	1258	short	391	high	290099	pericentromeric	8176	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15095327	15098439	AT1TE49410	.	-	ATREP18	.	DNA	3112	medium	391	high	291357	pericentromeric	9434	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15096702	15097188	AT1TE49415	.	-	ATREP18	.	DNA	486	short	391	high	292732	pericentromeric	10809	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15097188	15097955	AT1TE49420	.	-	ATREP18	.	DNA	767	short	391	high	293218	pericentromeric	11295	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15098439	15100966	AT1TE49425	.	-	ATREP18	.	DNA	2527	medium	391	high	294469	pericentromeric	12546	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15100966	15102110	AT1TE49430	.	-	ATREP18	.	DNA	1144	short	391	high	296996	pericentromeric	15073	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15102110	15103242	AT1TE49435	.	-	ATREP18	.	DNA	1132	short	391	high	298140	pericentromeric	16217	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15103242	15103306	AT1TE49440	.	-	ATREP18	.	DNA	64	tiny	391	high	299272	pericentromeric	17349	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	15103588	15103609	AT1TE49445	.	-	ATREP18	.	DNA	21	tiny	391	high	299618	pericentromeric	17695	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15103609	15104914	AT1TE49450	.	-	ATREP18	.	DNA	1305	short	391	high	299639	pericentromeric	17716	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15104914	15106075	AT1TE49455	.	-	ATREP18	.	DNA	1161	short	391	high	300944	pericentromeric	19021	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15106341	15107028	AT1TE49460	.	-	ATREP18	.	DNA	687	short	391	high	302371	pericentromeric	20448	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15107028	15107713	AT1TE49465	.	-	ATREP18	.	DNA	685	short	391	high	303058	pericentromeric	21135	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15107713	15108193	AT1TE49470	.	-	ATREP18	.	DNA	480	short	391	high	303743	pericentromeric	21820	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15108193	15108852	AT1TE49475	.	-	ATREP18	.	DNA	659	short	391	high	304223	pericentromeric	22300	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15108852	15112238	AT1TE49480	.	-	ATREP18	.	DNA	3386	medium	391	high	304882	pericentromeric	22959	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15110617	15110898	AT1TE49485	.	-	ATREP18	.	DNA	281	short	391	high	306647	pericentromeric	24724	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	15111117	15111251	AT1TE49490	.	-	ATREP18	.	DNA	135	short	391	high	307146	pericentromeric	25223	.	.	.	.	.	.	.
Chr1	15112238	15112514	AT1TE49495	.	-	ATREP18	.	DNA	276	short	391	high	308268	pericentromeric	26345	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15112514	15113934	AT1TE49500	.	-	ATREP18	.	DNA	1420	short	391	high	308544	pericentromeric	26621	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15113100	15113215	AT1TE49505	.	-	ATREP18	.	DNA	116	short	391	high	309129	pericentromeric	27206	.	.	.	.	.	.	.
Chr1	15113935	15116186	AT1TE49510	.	-	ATREP18	.	DNA	2252	medium	391	high	309964	pericentromeric	28041	.	.	.	.	.	.	.
Chr1	15114786	15115191	AT1TE49515	.	-	ATREP18	.	DNA	406	short	391	high	310815	pericentromeric	28892	.	.	.	.	.	.	.
Chr1	15116187	15116782	AT1TE49520	.	-	ATREP18	.	DNA	596	short	391	high	312216	pericentromeric	30293	.	.	.	.	.	.	.
Chr1	15117066	15117309	AT1TE49525	.	-	ATREP18	.	DNA	243	short	391	high	313096	pericentromeric	31173	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15117309	15118501	AT1TE49530	.	-	ATREP18	.	DNA	1192	short	391	high	313339	pericentromeric	31416	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15118502	15118726	AT1TE49535	.	-	ATREP18	.	DNA	225	short	391	high	314531	pericentromeric	32608	.	.	.	.	.	.	.
Chr1	15118726	15122535	AT1TE49540	.	-	ATREP18	.	DNA	3809	medium	391	high	314756	pericentromeric	32833	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15118810	15119651	AT1TE49545	.	-	ATREP18	.	DNA	842	short	391	high	314839	pericentromeric	32916	.	.	.	.	.	.	.
Chr1	15121501	15122018	AT1TE49550	.	-	ATREP18	.	DNA	518	short	391	high	317530	pericentromeric	35607	.	.	.	.	.	.	.
Chr1	15122051	15122272	AT1TE49555	.	-	ATREP18	.	DNA	222	short	391	high	318080	pericentromeric	36157	.	.	.	.	.	.	.
Chr1	15122536	15124277	AT1TE49560	.	-	ATREP18	.	DNA	1742	short	391	high	318565	pericentromeric	36642	.	.	.	.	.	.	.
Chr1	15123084	15123199	AT1TE49565	.	-	ATREP18	.	DNA	116	short	391	high	319113	pericentromeric	37190	.	.	.	.	.	.	.
Chr1	15124278	15127167	AT1TE49570	.	-	ATREP18	.	DNA	2890	medium	391	high	320307	pericentromeric	38384	.	.	.	.	.	.	.
Chr1	15124536	15124760	AT1TE49575	.	-	ATREP18	.	DNA	225	short	391	high	320565	pericentromeric	38642	.	.	.	.	.	.	.
Chr1	15127168	15127553	AT1TE49580	.	-	ATREP18	.	DNA	386	short	391	high	323197	pericentromeric	41274	.	.	.	.	.	.	.
Chr1	15127820	15127856	AT1TE49585	.	-	ATREP18	.	DNA	37	tiny	391	high	323849	pericentromeric	41926	.	.	.	.	.	.	.
Chr1	15127857	15128770	AT1TE49590	.	-	ATREP18	.	DNA	914	short	391	high	323886	pericentromeric	41963	.	.	.	.	.	.	.
Chr1	15128771	15130450	AT1TE49595	.	-	ATREP18	.	DNA	1680	short	391	high	324800	pericentromeric	42877	.	.	.	.	.	.	.
Chr1	15129928	15130149	AT1TE49600	.	-	ATREP18	.	DNA	222	short	391	high	325957	pericentromeric	44034	.	.	.	.	.	.	.
Chr1	15130670	15132433	AT1TE49605	.	-	ATREP18	.	DNA	1763	short	391	high	326700	pericentromeric	44777	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15130979	15131229	AT1TE49610	.	-	ATREP18	.	DNA	251	short	391	high	327008	pericentromeric	45085	.	.	.	.	.	.	.
Chr1	15131229	15132421	AT1TE49615	.	-	ATREP18	.	DNA	1192	short	391	high	327259	pericentromeric	45336	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15132504	15132634	AT1TE49620	.	-	ATREP18	.	DNA	131	short	391	high	328533	pericentromeric	46610	.	.	.	.	.	.	.
Chr1	15132647	15132728	AT1TE49625	.	-	ATREP18	.	DNA	82	tiny	391	high	328676	pericentromeric	46753	.	.	.	.	.	.	.
Chr1	15132729	15133866	AT1TE49630	.	-	ATREP18	.	DNA	1138	short	391	high	328758	pericentromeric	46835	.	.	.	.	.	.	.
Chr1	15133867	15134088	AT1TE49635	.	-	ATREP18	.	DNA	222	short	391	high	329896	pericentromeric	47973	.	.	.	.	.	.	.
Chr1	15134088	15134388	AT1TE49640	.	-	ATREP18	.	DNA	300	short	391	high	330118	pericentromeric	48195	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15134899	15135014	AT1TE49645	.	-	ATREP18	.	DNA	116	short	391	high	330928	pericentromeric	49005	.	.	.	.	.	.	.
Chr1	15135167	15136463	AT1TE49650	.	-	ATREP18	.	DNA	1296	short	391	high	331197	pericentromeric	49274	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15136463	15136671	AT1TE49655	.	-	ATREP18	.	DNA	208	short	391	high	332493	pericentromeric	50570	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15136671	15136969	AT1TE49660	.	-	ATREP18	.	DNA	298	short	391	high	332701	pericentromeric	50778	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15137430	15138658	AT1TE49665	.	-	ATREP18	.	DNA	1228	short	391	high	333460	pericentromeric	51537	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15138834	15139067	AT1TE49670	.	+	ATENSPM6	En-Spm	DNA	233	short	151	medium	334864	pericentromeric	52941	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	15139695	15142452	AT1TE49675	.	+	ATENSPM6	En-Spm	DNA	2757	medium	151	medium	335725	pericentromeric	53802	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	15141824	15142423	+	transcript_id-"552b7328-5940-4240-9294-0d612be041c9|3"
Chr1	15142452	15142841	AT1TE49680	.	+	ATENSPM6	En-Spm	DNA	389	short	151	medium	338482	pericentromeric	56559	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	15142841	15142872	AT1TE49685	.	+	ATENSPM9	En-Spm	DNA	31	tiny	97	medium	338871	pericentromeric	56948	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15143104	15143172	AT1TE49690	.	-	ATREP18	.	DNA	68	tiny	391	high	339134	pericentromeric	57211	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15143172	15144446	AT1TE49695	.	-	ATREP18	.	DNA	1274	short	391	high	339202	pericentromeric	57279	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15144446	15144946	AT1TE49700	.	-	ATREP18	.	DNA	500	short	391	high	340476	pericentromeric	58553	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15144946	15145210	AT1TE49705	.	-	ATREP18	.	DNA	264	short	391	high	340976	pericentromeric	59053	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15145220	15145719	AT1TE49710	.	-	ATREP18	.	DNA	499	short	391	high	341250	pericentromeric	59327	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15145719	15149691	AT1TE49715	.	-	ATREP18	.	DNA	3972	medium	391	high	341749	pericentromeric	59826	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15145997	15146623	AT1TE49720	.	-	ATREP18	.	DNA	626	short	391	high	342027	pericentromeric	60104	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15147343	15147808	AT1TE49725	.	-	ATREP18	.	DNA	465	short	391	high	343373	pericentromeric	61450	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15149754	15149893	AT1TE49730	.	+	ATENSPM3	En-Spm	DNA	139	short	98	medium	345784	pericentromeric	63861	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	15150750	15151061	AT1TE49735	.	+	ATENSPM3	En-Spm	DNA	311	short	98	medium	346780	pericentromeric	64857	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	15151061	15158195	AT1TE49740	.	+	ATENSPM7	En-Spm	DNA	7134	long	74	medium	347091	pericentromeric	65168	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	15149996	15158501	+	transcript_id-"f5136ca4-92ed-4f33-918a-4d397168e136|16"
Chr1	15156245	15156288	AT1TE49745	.	+	ATENSPM7	En-Spm	DNA	43	tiny	74	medium	352275	pericentromeric	70352	no-RdDM	no-CHH	.	.	.	.	.
Chr1	15158195	15158295	AT1TE49750	.	+	ATENSPM3	En-Spm	DNA	100	short	98	medium	354225	pericentromeric	72302	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	15160856	15166563	AT1TE49755	.	+	ATLANTYS2	Gypsy	LTR	5707	long	179	medium	356886	pericentromeric	73989	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	15166755	15166788	AT1TE49760	.	-	ATREP18	.	DNA	34	tiny	391	high	362784	pericentromeric	73764	.	.	.	.	.	.	.
Chr1	15166788	15169117	AT1TE49765	.	-	ATREP18	.	DNA	2329	medium	391	high	362818	pericentromeric	71435	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	15168114	15168328	AT1TE49770	.	-	ATREP18	.	DNA	214	short	391	high	364144	pericentromeric	72224	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	15168329	15168546	AT1TE49775	.	-	ATREP18	.	DNA	218	short	391	high	364358	pericentromeric	72006	.	.	.	.	.	.	.
Chr1	15169117	15171671	AT1TE49780	.	-	ATREP18	.	DNA	2554	medium	391	high	365147	pericentromeric	68881	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	15169695	15170083	AT1TE49785	.	-	ATREP18	.	DNA	388	short	391	high	365725	pericentromeric	70469	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	15170083	15170321	AT1TE49790	.	-	ATREP18	.	DNA	238	short	391	high	366113	pericentromeric	70231	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15172071	15172304	AT1TE49795	.	-	ATREP18	.	DNA	234	short	391	high	368100	pericentromeric	68248	.	.	.	.	.	.	.
Chr1	15172305	15172576	AT1TE49800	.	-	ATREP18	.	DNA	272	short	391	high	368334	pericentromeric	67976	.	.	.	.	.	.	.
Chr1	15172576	15173462	AT1TE49805	.	-	ATREP18	.	DNA	886	short	391	high	368606	pericentromeric	67090	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15173462	15174824	AT1TE49810	.	-	ATREP18	.	DNA	1362	short	391	high	369492	pericentromeric	65728	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15174321	15174592	AT1TE49815	.	-	ATREP18	.	DNA	272	short	391	high	370350	pericentromeric	65960	.	.	.	.	.	.	.
Chr1	15174593	15174632	AT1TE49820	.	-	ATREP18	.	DNA	40	tiny	391	high	370622	pericentromeric	65920	.	.	.	.	.	.	.
Chr1	15174825	15175683	AT1TE49825	.	-	ATREP18	.	DNA	859	short	391	high	370854	pericentromeric	64869	.	.	.	.	.	.	.
Chr1	15176823	15178336	AT1TE49830	.	-	ATREP18	.	DNA	1513	short	391	high	372853	pericentromeric	62216	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15177408	15177670	AT1TE49835	.	-	ATREP18	.	DNA	263	short	391	high	373437	pericentromeric	62882	.	.	.	.	.	.	.
Chr1	15178529	15178812	AT1TE49840	.	-	ATREP18	.	DNA	283	short	391	high	374559	pericentromeric	61740	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15178936	15186992	AT1TE49845	.	+	ATHILA6B	Gypsy	LTR	8056	long	134	medium	374966	pericentromeric	53560	no-RdDM	no-RdDM	ExpressedAndAnnotated	15178940	15179775	+	transcript_id-"381674f3-fdc9-4265-8482-906c88cdd87c|3"
Chr1	15186992	15192976	AT1TE49850	.	+	ATHILA2	Gypsy	LTR	5984	long	413	high	383022	pericentromeric	47576	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	15191182	15191986	+	transcript_id-"4d733ae2-398a-47c2-9f17-e9f11d2fa0d2|9"
Chr1	15193028	15193167	AT1TE49855	.	-	ATREP18	.	DNA	139	short	391	high	389058	pericentromeric	47385	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	15193569	15194022	AT1TE49860	.	-	ATREP18	.	DNA	453	short	391	high	389599	pericentromeric	46530	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	15194022	15194675	AT1TE49865	.	-	ATREP18	.	DNA	653	short	391	high	390052	pericentromeric	45877	PolIV-and-RDR6-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	15194675	15196996	AT1TE49870	.	-	ATREP18	.	DNA	2321	medium	391	high	390705	pericentromeric	43556	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	15196996	15197741	AT1TE49875	.	-	ATREP18	.	DNA	745	short	391	high	393026	pericentromeric	42811	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	15197220	15197498	AT1TE49880	.	-	ATREP18	.	DNA	278	short	391	high	393250	pericentromeric	43054	no-CHH	no-RdDM	.	.	.	.	.
Chr1	15197741	15199555	AT1TE49885	.	-	ATREP18	.	DNA	1814	short	391	high	393771	pericentromeric	40997	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15199555	15199643	AT1TE49890	.	-	ATREP18	.	DNA	88	tiny	391	high	395585	pericentromeric	40909	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15200022	15200536	AT1TE49895	.	-	ATREP18	.	DNA	514	short	391	high	396052	pericentromeric	40016	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15200536	15201505	AT1TE49900	.	-	ATREP18	.	DNA	969	short	391	high	396566	pericentromeric	39047	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15201505	15201536	AT1TE49905	.	-	ATREP18	.	DNA	31	tiny	391	high	397535	pericentromeric	39016	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	15201954	15202202	AT1TE49910	.	-	ATREP18	.	DNA	248	short	391	high	397984	pericentromeric	38350	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15202202	15202485	AT1TE49915	.	-	ATREP18	.	DNA	283	short	391	high	398232	pericentromeric	38067	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15202485	15204897	AT1TE49920	.	-	ATREP18	.	DNA	2412	medium	391	high	398515	pericentromeric	35655	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15204897	15205715	AT1TE49925	.	-	ATREP18	.	DNA	818	short	391	high	400927	pericentromeric	34837	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15205192	15205400	AT1TE49930	.	-	ATREP18	.	DNA	208	short	391	high	401222	pericentromeric	35152	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15205715	15205935	AT1TE49935	.	-	ATREP18	.	DNA	220	short	391	high	401745	pericentromeric	34617	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15206459	15206506	AT1TE49940	.	-	ATREP18	.	DNA	47	tiny	391	high	402489	pericentromeric	34046	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	15206506	15207845	AT1TE49945	.	-	ATREP18	.	DNA	1339	short	391	high	402536	pericentromeric	32707	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15208199	15209311	AT1TE49950	.	-	ATREP18	.	DNA	1112	short	391	high	404229	pericentromeric	31241	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15209311	15215968	AT1TE49955	.	+	ATENSPM5	En-Spm	DNA	6657	long	111	medium	405341	pericentromeric	24584	no-RdDM	no-RdDM	ExpressedAndAnnotated	15209773,15213245	15211039,15213830	+,+	transcript_id-"e4778e63-d9f8-472e-81a4-955105bd73d0|4",transcript_id-"cc392381-7d53-4f1d-8f5f-7fdf77f0c6b6|3"
Chr1	15215968	15220007	AT1TE49960	.	-	ATLANTYS1	Gypsy	LTR	4039	medium	153	medium	411998	pericentromeric	20545	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	15217378	15217408	AT1TE49965	.	-	ATLANTYS2	Gypsy	LTR	31	tiny	179	medium	413407	pericentromeric	23144	.	.	.	.	.	.	.
Chr1	15220301	15220325	AT1TE49970	.	-	TAT1_ATH	Gypsy	LTR	25	tiny	87	medium	416330	pericentromeric	20227	.	.	.	.	.	.	.
Chr1	15220326	15220989	AT1TE49975	.	-	TAT1_ATH	Gypsy	LTR	664	short	87	medium	416355	pericentromeric	19563	.	.	.	.	.	.	.
Chr1	15221405	15221461	AT1TE49980	.	-	ATLANTYS1	Gypsy	LTR	57	tiny	153	medium	417434	pericentromeric	19091	.	.	.	.	.	.	.
Chr1	15221951	15221984	AT1TE49985	.	-	ATREP18	.	DNA	34	tiny	391	high	417980	pericentromeric	18568	.	.	.	.	.	.	.
Chr1	15221985	15223943	AT1TE49990	.	-	ATREP18	.	DNA	1959	short	391	high	418014	pericentromeric	16609	.	.	.	.	.	.	.
Chr1	15222984	15223013	AT1TE49995	.	-	ATREP18	.	DNA	30	tiny	391	high	419013	pericentromeric	17539	.	.	.	.	.	.	.
Chr1	15223944	15225219	AT1TE50000	.	-	ATREP18	.	DNA	1276	short	391	high	419973	pericentromeric	15333	.	.	.	.	.	.	.
Chr1	15225732	15225979	AT1TE50005	.	-	ATREP18	.	DNA	248	short	391	high	421761	pericentromeric	14573	.	.	.	.	.	.	.
Chr1	15225980	15226233	AT1TE50010	.	-	ATREP18	.	DNA	254	short	391	high	422009	pericentromeric	14319	.	.	.	.	.	.	.
Chr1	15226234	15227237	AT1TE50015	.	-	ATREP18	.	DNA	1004	short	391	high	422263	pericentromeric	13315	.	.	.	.	.	.	.
Chr1	15227238	15229687	AT1TE50020	.	-	ATREP18	.	DNA	2450	medium	391	high	423267	pericentromeric	10865	.	.	.	.	.	.	.
Chr1	15228667	15229050	AT1TE50025	.	-	ATREP18	.	DNA	384	short	391	high	424696	pericentromeric	11502	.	.	.	.	.	.	.
Chr1	15229687	15229927	AT1TE50030	.	-	ATREP18	.	DNA	240	short	391	high	425717	pericentromeric	10625	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	15229928	15230408	AT1TE50035	.	-	ATREP18	.	DNA	481	short	391	high	425957	pericentromeric	10144	.	.	.	.	.	.	.
Chr1	15230409	15230833	AT1TE50040	.	-	ATREP18	.	DNA	425	short	391	high	426438	pericentromeric	9719	.	.	.	.	.	.	.
Chr1	15231136	15231165	AT1TE50045	.	-	ATREP18	.	DNA	30	tiny	391	high	427165	pericentromeric	9387	.	.	.	.	.	.	.
Chr1	15231166	15232066	AT1TE50050	.	-	ATREP18	.	DNA	901	short	391	high	427195	pericentromeric	8486	.	.	.	.	.	.	.
Chr1	15232067	15233436	AT1TE50055	.	-	ATREP18	.	DNA	1370	short	391	high	428096	pericentromeric	7116	.	.	.	.	.	.	.
Chr1	15233437	15233912	AT1TE50060	.	-	ATREP18	.	DNA	476	short	391	high	429466	pericentromeric	6640	.	.	.	.	.	.	.
Chr1	15233913	15234391	AT1TE50065	.	-	ATREP18	.	DNA	479	short	391	high	429942	pericentromeric	6161	.	.	.	.	.	.	.
Chr1	15234450	15234664	AT1TE50070	.	-	ATREP18	.	DNA	215	short	391	high	430479	pericentromeric	5888	.	.	.	.	.	.	.
Chr1	15234665	15235089	AT1TE50075	.	-	ATREP18	.	DNA	425	short	391	high	430694	pericentromeric	5463	.	.	.	.	.	.	.
Chr1	15235362	15235856	AT1TE50080	.	-	ATREP18	.	DNA	495	short	391	high	431391	pericentromeric	4696	.	.	.	.	.	.	.
Chr1	15235857	15236842	AT1TE50085	.	-	ATREP18	.	DNA	986	short	391	high	431886	pericentromeric	3710	.	.	.	.	.	.	.
Chr1	15236394	15236622	AT1TE50090	.	-	ATREP18	.	DNA	229	short	391	high	432423	pericentromeric	3930	.	.	.	.	.	.	.
Chr1	15236843	15236924	AT1TE50095	.	-	ATREP18	.	DNA	82	tiny	391	high	432872	pericentromeric	3628	.	.	.	.	.	.	.
Chr1	15236925	15238028	AT1TE50100	.	-	ATREP18	.	DNA	1104	short	391	high	432954	pericentromeric	2524	.	.	.	.	.	.	.
Chr1	15238029	15240421	AT1TE50105	.	-	ATREP18	.	DNA	2393	medium	391	high	434058	pericentromeric	131	.	.	.	.	.	.	.
Chr1	15240422	15240466	AT1TE50110	.	-	ATREP18	.	DNA	45	tiny	391	high	436451	pericentromeric	86	.	.	.	.	.	.	.
Chr1	15240538	15244617	AT1TE50115	.	+	ATGP5	Gypsy	LTR	4080	medium	86	medium	436567	pericentromeric	0	.	.	.	.	.	.	.
Chr1	15244844	15244910	AT1TE50120	.	-	ATREP18	.	DNA	67	tiny	391	high	440873	pericentromeric	807	.	.	.	.	.	.	.
Chr1	15244911	15245133	AT1TE50125	.	-	ATREP18	.	DNA	223	short	391	high	440940	pericentromeric	874	.	.	.	.	.	.	.
Chr1	15245134	15245590	AT1TE50130	.	-	ATREP18	.	DNA	457	short	391	high	441163	pericentromeric	1097	.	.	.	.	.	.	.
Chr1	15245591	15245750	AT1TE50135	.	-	ATREP18	.	DNA	160	short	391	high	441620	pericentromeric	1554	.	.	.	.	.	.	.
Chr1	15246024	15248014	AT1TE50140	.	-	ATREP18	.	DNA	1991	short	391	high	442053	pericentromeric	1987	.	.	.	.	.	.	.
Chr1	15248015	15252091	AT1TE50145	.	-	ATREP18	.	DNA	4077	medium	391	high	444044	pericentromeric	3978	.	.	.	.	.	.	.
Chr1	15248315	15248945	AT1TE50150	.	-	ATREP18	.	DNA	631	short	391	high	444344	pericentromeric	4278	.	.	.	.	.	.	.
Chr1	15248946	15249187	AT1TE50155	.	-	ATREP18	.	DNA	242	short	391	high	444975	pericentromeric	4909	.	.	.	.	.	.	.
Chr1	15251126	15251367	AT1TE50160	.	-	ATREP18	.	DNA	242	short	391	high	447155	pericentromeric	7089	.	.	.	.	.	.	.
Chr1	15252092	15253294	AT1TE50165	.	-	ATREP18	.	DNA	1203	short	391	high	448121	pericentromeric	8055	.	.	.	.	.	.	.
Chr1	15253938	15254219	AT1TE50170	.	-	ATGP2N	Gypsy	LTR	282	short	54	medium	449967	pericentromeric	9901	.	.	.	.	.	.	.
Chr1	15254282	15257277	AT1TE50175	.	-	ATREP18	.	DNA	2996	medium	391	high	450311	pericentromeric	10245	.	.	.	.	.	.	.
Chr1	15254567	15254786	AT1TE50180	.	-	ATREP18	.	DNA	220	short	391	high	450596	pericentromeric	10530	.	.	.	.	.	.	.
Chr1	15257278	15258677	AT1TE50185	.	-	ATREP18	.	DNA	1400	short	391	high	453307	pericentromeric	13241	.	.	.	.	.	.	.
Chr1	15257734	15257907	AT1TE50190	.	-	ATREP18	.	DNA	174	short	391	high	453763	pericentromeric	13697	.	.	.	.	.	.	.
Chr1	15257922	15258139	AT1TE50195	.	-	ATREP18	.	DNA	218	short	391	high	453951	pericentromeric	13885	.	.	.	.	.	.	.
Chr1	15258140	15258219	AT1TE50200	.	-	ATREP18	.	DNA	80	tiny	391	high	454169	pericentromeric	14103	.	.	.	.	.	.	.
Chr1	15258693	15258961	AT1TE50205	.	-	ATREP18	.	DNA	269	short	391	high	454722	pericentromeric	14656	.	.	.	.	.	.	.
Chr1	15259182	15259588	AT1TE50210	.	-	ATREP18	.	DNA	407	short	391	high	455211	pericentromeric	15145	.	.	.	.	.	.	.
Chr1	15259860	15259926	AT1TE50215	.	-	ATREP18	.	DNA	67	tiny	391	high	455889	pericentromeric	15823	.	.	.	.	.	.	.
Chr1	15259927	15263897	AT1TE50220	.	-	ATREP18	.	DNA	3971	medium	391	high	455956	pericentromeric	15890	.	.	.	.	.	.	.
Chr1	15261190	15261422	AT1TE50225	.	-	ATREP18	.	DNA	233	short	391	high	457219	pericentromeric	17153	.	.	.	.	.	.	.
Chr1	15261423	15261829	AT1TE50230	.	-	ATREP18	.	DNA	407	short	391	high	457452	pericentromeric	17386	.	.	.	.	.	.	.
Chr1	15262110	15263192	AT1TE50235	.	-	ATREP18	.	DNA	1083	short	391	high	458139	pericentromeric	18073	.	.	.	.	.	.	.
Chr1	15263898	15264560	AT1TE50240	.	-	ATREP18	.	DNA	663	short	391	high	459927	pericentromeric	19861	.	.	.	.	.	.	.
Chr1	15264561	15264864	AT1TE50245	.	-	ATREP18	.	DNA	304	short	391	high	460590	pericentromeric	20524	.	.	.	.	.	.	.
Chr1	15264865	15267189	AT1TE50250	.	-	ATREP18	.	DNA	2325	medium	391	high	460894	pericentromeric	20828	.	.	.	.	.	.	.
Chr1	15267190	15267476	AT1TE50255	.	-	ATREP18	.	DNA	287	short	391	high	463219	pericentromeric	23153	.	.	.	.	.	.	.
Chr1	15267477	15269583	AT1TE50260	.	-	ATREP18	.	DNA	2107	medium	391	high	463506	pericentromeric	23440	.	.	.	.	.	.	.
Chr1	15269584	15269966	AT1TE50265	.	-	ATREP18	.	DNA	383	short	391	high	465613	pericentromeric	25547	.	.	.	.	.	.	.
Chr1	15270566	15274254	AT1TE50270	.	-	ATREP18	.	DNA	3689	medium	391	high	466595	pericentromeric	26529	.	.	.	.	.	.	.
Chr1	15271550	15273888	AT1TE50275	.	-	ATREP18	.	DNA	2339	medium	391	high	467579	pericentromeric	27513	.	.	.	.	.	.	.
Chr1	15274867	15277023	AT1TE50280	.	-	ATREP18	.	DNA	2157	medium	391	high	470896	pericentromeric	30830	.	.	.	.	.	.	.
Chr1	15275866	15276438	AT1TE50285	.	-	ATREP18	.	DNA	573	short	391	high	471895	pericentromeric	31829	.	.	.	.	.	.	.
Chr1	15277161	15277306	AT1TE50290	.	+	ATREP18	.	DNA	146	short	391	high	473190	pericentromeric	33124	.	.	.	.	.	.	.
Chr1	15277533	15277792	AT1TE50295	.	+	ATREP18	.	DNA	260	short	391	high	473562	pericentromeric	33496	.	.	.	.	.	.	.
Chr1	15277990	15279016	AT1TE50300	.	-	ATREP18	.	DNA	1027	short	391	high	474019	pericentromeric	33953	.	.	.	.	.	.	.
Chr1	15279017	15280077	AT1TE50305	.	-	ATREP18	.	DNA	1061	short	391	high	475046	pericentromeric	34980	.	.	.	.	.	.	.
Chr1	15280423	15280448	AT1TE50310	.	+	ATLANTYS2	Gypsy	LTR	26	tiny	179	medium	476452	pericentromeric	36386	.	.	.	.	.	.	.
Chr1	15280449	15289511	AT1TE50315	.	+	ATLANTYS2	Gypsy	LTR	9063	long	179	medium	476478	pericentromeric	36412	.	.	.	.	.	.	.
Chr1	15285786	15285916	AT1TE50320	.	+	ATLANTYS2	Gypsy	LTR	131	short	179	medium	481815	pericentromeric	41749	.	.	.	.	.	.	.
Chr1	15289512	15289859	AT1TE50330	.	-	ATREP18	.	DNA	348	short	391	high	485541	pericentromeric	45475	.	.	.	.	.	.	.
Chr1	15289860	15290591	AT1TE50335	.	-	ATREP18	.	DNA	732	short	391	high	485889	pericentromeric	45823	.	.	.	.	.	.	.
Chr1	15291184	15292063	AT1TE50340	.	-	ATREP18	.	DNA	880	short	391	high	487213	pericentromeric	47147	.	.	.	.	.	.	.
Chr1	15292160	15296694	AT1TE50345	.	+	ATENSPM9	En-Spm	DNA	4535	medium	97	medium	488189	pericentromeric	48123	.	.	.	.	.	.	.
Chr1	15296858	15297049	AT1TE50350	.	-	ATREP18	.	DNA	192	short	391	high	492887	pericentromeric	52821	.	.	.	.	.	.	.
Chr1	15297256	15297326	AT1TE50355	.	-	ATREP18	.	DNA	71	tiny	391	high	493285	pericentromeric	53219	.	.	.	.	.	.	.
Chr1	15297327	15297360	AT1TE50360	.	-	ATREP18	.	DNA	34	tiny	391	high	493356	pericentromeric	53290	.	.	.	.	.	.	.
Chr1	15297360	15299719	AT1TE50365	.	-	ATREP18	.	DNA	2359	medium	391	high	493390	pericentromeric	53324	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15299720	15300273	AT1TE50370	.	-	ATREP18	.	DNA	554	short	391	high	495749	pericentromeric	55683	.	.	.	.	.	.	.
Chr1	15300274	15308042	AT1TE50375	.	+	ATLANTYS2	Gypsy	LTR	7769	long	179	medium	496303	pericentromeric	56237	.	.	.	.	.	.	.
Chr1	15308044	15308539	AT1TE50380	.	-	ATREP18	.	DNA	496	short	391	high	504073	pericentromeric	64007	.	.	.	.	.	.	.
Chr1	15308540	15310254	AT1TE50385	.	-	ATREP18	.	DNA	1715	short	391	high	504569	pericentromeric	64503	.	.	.	.	.	.	.
Chr1	15310255	15310907	AT1TE50390	.	-	ATREP18	.	DNA	653	short	391	high	506284	pericentromeric	66218	.	.	.	.	.	.	.
Chr1	15311897	15312018	AT1TE50395	.	-	ATREP18	.	DNA	122	short	391	high	507926	pericentromeric	67860	.	.	.	.	.	.	.
Chr1	15312019	15313134	AT1TE50400	.	+	ATHILA	Gypsy	LTR	1116	short	198	medium	508048	pericentromeric	67982	.	.	.	.	.	.	.
Chr1	15313135	15313163	AT1TE50405	.	+	ATHILA2	Gypsy	LTR	29	tiny	413	high	509164	pericentromeric	69098	.	.	.	.	.	.	.
Chr1	15313533	15313563	AT1TE50410	.	-	ATLANTYS2	Gypsy	LTR	31	tiny	179	medium	509562	pericentromeric	69496	.	.	.	.	.	.	.
Chr1	15313564	15316162	AT1TE50415	.	-	ATLANTYS1	Gypsy	LTR	2599	medium	153	medium	509593	pericentromeric	69527	.	.	.	.	.	.	.
Chr1	15316456	15316480	AT1TE50420	.	-	TAT1_ATH	Gypsy	LTR	25	tiny	87	medium	512485	pericentromeric	72419	.	.	.	.	.	.	.
Chr1	15316481	15317144	AT1TE50425	.	-	TAT1_ATH	Gypsy	LTR	664	short	87	medium	512510	pericentromeric	72444	.	.	.	.	.	.	.
Chr1	15317560	15317619	AT1TE50430	.	-	ATLANTYS1	Gypsy	LTR	60	tiny	153	medium	513589	pericentromeric	73523	.	.	.	.	.	.	.
Chr1	15318105	15319617	AT1TE50435	.	-	ATREP18	.	DNA	1512	short	391	high	514135	pericentromeric	74069	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	15318353	15318703	AT1TE50440	.	-	ATREP18	.	DNA	350	short	391	high	514383	pericentromeric	74317	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	15318703	15319907	AT1TE50445	.	-	ATREP18	.	DNA	1204	short	391	high	514733	pericentromeric	74667	no-RdDM	no-CHH	.	.	.	.	.
Chr1	15319908	15321345	AT1TE50450	.	-	ATREP18	.	DNA	1438	short	391	high	515937	pericentromeric	75871	.	.	.	.	.	.	.
Chr1	15321346	15321386	AT1TE50455	.	-	ATREP18	.	DNA	41	tiny	391	high	517375	pericentromeric	77309	.	.	.	.	.	.	.
Chr1	15321932	15322127	AT1TE50460	.	-	ATREP18	.	DNA	196	short	391	high	517961	pericentromeric	77895	.	.	.	.	.	.	.
Chr1	15323067	15323540	AT1TE50465	.	-	ATREP18	.	DNA	474	short	391	high	519096	pericentromeric	79030	.	.	.	.	.	.	.
Chr1	15323541	15324969	AT1TE50470	.	-	ATREP18	.	DNA	1429	short	391	high	519570	pericentromeric	79504	.	.	.	.	.	.	.
Chr1	15324970	15325947	AT1TE50475	.	-	ATREP18	.	DNA	978	short	391	high	520999	pericentromeric	80933	.	.	.	.	.	.	.
Chr1	15325948	15325990	AT1TE50480	.	-	ATREP18	.	DNA	43	tiny	391	high	521977	pericentromeric	81911	.	.	.	.	.	.	.
Chr1	15325991	15327528	AT1TE50485	.	-	ATREP18	.	DNA	1538	short	391	high	522020	pericentromeric	81954	.	.	.	.	.	.	.
Chr1	15327092	15327326	AT1TE50490	.	-	ATREP18	.	DNA	235	short	391	high	523121	pericentromeric	83055	.	.	.	.	.	.	.
Chr1	15327529	15331031	AT1TE50495	.	-	ATREP18	.	DNA	3503	medium	391	high	523558	pericentromeric	83492	.	.	.	.	.	.	.
Chr1	15329719	15330059	AT1TE50500	.	-	ATREP18	.	DNA	341	short	391	high	525748	pericentromeric	85682	.	.	.	.	.	.	.
Chr1	15330060	15330299	AT1TE50505	.	-	ATREP18	.	DNA	240	short	391	high	526089	pericentromeric	86023	.	.	.	.	.	.	.
Chr1	15331032	15331783	AT1TE50510	.	-	ATREP18	.	DNA	752	short	391	high	527061	pericentromeric	86995	.	.	.	.	.	.	.
Chr1	15331784	15332208	AT1TE50515	.	-	ATREP18	.	DNA	425	short	391	high	527813	pericentromeric	87747	.	.	.	.	.	.	.
Chr1	15332481	15332510	AT1TE50520	.	-	ATREP18	.	DNA	30	tiny	391	high	528510	pericentromeric	88444	.	.	.	.	.	.	.
Chr1	15332511	15332734	AT1TE50525	.	-	ATREP18	.	DNA	224	short	391	high	528540	pericentromeric	88474	.	.	.	.	.	.	.
Chr1	15332976	15333046	AT1TE50530	.	-	ATREP18	.	DNA	71	tiny	391	high	529005	pericentromeric	88939	.	.	.	.	.	.	.
Chr1	15333047	15335354	AT1TE50535	.	-	ATREP18	.	DNA	2308	medium	391	high	529076	pericentromeric	89010	.	.	.	.	.	.	.
Chr1	15335355	15336129	AT1TE50540	.	-	ATREP18	.	DNA	775	short	391	high	531384	pericentromeric	91318	.	.	.	.	.	.	.
Chr1	15336130	15336536	AT1TE50545	.	-	ATREP18	.	DNA	407	short	391	high	532159	pericentromeric	92093	.	.	.	.	.	.	.
Chr1	15336921	15337560	AT1TE50550	.	-	ATREP18	.	DNA	640	short	391	high	532950	pericentromeric	92884	.	.	.	.	.	.	.
Chr1	15337561	15337585	AT1TE50555	.	-	ATREP18	.	DNA	25	tiny	391	high	533590	pericentromeric	93524	.	.	.	.	.	.	.
Chr1	15337657	15341736	AT1TE50560	.	+	ATGP5	Gypsy	LTR	4080	medium	86	medium	533686	pericentromeric	90839	.	.	.	.	.	.	.
Chr1	15341982	15342029	AT1TE50565	.	-	ATREP18	.	DNA	48	tiny	391	high	538011	pericentromeric	90546	.	.	.	.	.	.	.
Chr1	15342030	15342072	AT1TE50570	.	-	ATREP18	.	DNA	43	tiny	391	high	538059	pericentromeric	90503	.	.	.	.	.	.	.
Chr1	15342073	15344365	AT1TE50575	.	-	ATREP18	.	DNA	2293	medium	391	high	538102	pericentromeric	88210	.	.	.	.	.	.	.
Chr1	15343398	15343624	AT1TE50580	.	-	ATREP18	.	DNA	227	short	391	high	539427	pericentromeric	88951	.	.	.	.	.	.	.
Chr1	15343625	15343695	AT1TE50585	.	-	ATREP18	.	DNA	71	tiny	391	high	539654	pericentromeric	88880	.	.	.	.	.	.	.
Chr1	15344656	15345377	AT1TE50590	.	-	ATREP18	.	DNA	722	short	391	high	540685	pericentromeric	87198	.	.	.	.	.	.	.
Chr1	15345378	15345433	AT1TE50595	.	-	ATREP18	.	DNA	56	tiny	391	high	541407	pericentromeric	87142	.	.	.	.	.	.	.
Chr1	15345434	15345538	AT1TE50600	.	-	ATREP18	.	DNA	105	short	391	high	541463	pericentromeric	87037	.	.	.	.	.	.	.
Chr1	15346440	15346541	AT1TE50605	.	-	ATREP18	.	DNA	102	short	391	high	542469	pericentromeric	86034	.	.	.	.	.	.	.
Chr1	15346783	15346849	AT1TE50610	.	-	ATREP18	.	DNA	67	tiny	391	high	542812	pericentromeric	85726	.	.	.	.	.	.	.
Chr1	15346849	15349464	AT1TE50615	.	-	ATREP18	.	DNA	2615	medium	391	high	542879	pericentromeric	83111	no-RdDM	no-CHH	.	.	.	.	.
Chr1	15346864	15348553	AT1TE50620	.	-	ATREP18	.	DNA	1689	short	391	high	542894	pericentromeric	84022	no-RdDM	no-CHH	.	.	.	.	.
Chr1	15349465	15349965	AT1TE50625	.	-	ATREP18	.	DNA	501	short	391	high	545494	pericentromeric	82610	.	.	.	.	.	.	.
Chr1	15349966	15350188	AT1TE50630	.	-	ATREP18	.	DNA	223	short	391	high	545995	pericentromeric	82387	.	.	.	.	.	.	.
Chr1	15350189	15351395	AT1TE50635	.	-	ATREP18	.	DNA	1207	short	391	high	546218	pericentromeric	81180	.	.	.	.	.	.	.
Chr1	15352035	15352316	AT1TE50640	.	-	ATGP2N	Gypsy	LTR	282	short	54	medium	548064	pericentromeric	80259	.	.	.	.	.	.	.
Chr1	15352379	15352446	AT1TE50645	.	-	ATREP18	.	DNA	68	tiny	391	high	548408	pericentromeric	80129	.	.	.	.	.	.	.
Chr1	15352447	15354854	AT1TE50650	.	-	ATREP18	.	DNA	2408	medium	391	high	548476	pericentromeric	77721	.	.	.	.	.	.	.
Chr1	15352658	15352882	AT1TE50655	.	-	ATREP18	.	DNA	225	short	391	high	548687	pericentromeric	79693	.	.	.	.	.	.	.
Chr1	15355080	15355490	AT1TE50660	.	-	ATREP18	.	DNA	411	short	391	high	551109	pericentromeric	77085	.	.	.	.	.	.	.
Chr1	15355824	15357733	AT1TE50665	.	-	ATREP18	.	DNA	1910	short	391	high	551853	pericentromeric	74842	.	.	.	.	.	.	.
Chr1	15357048	15357278	AT1TE50670	.	-	ATREP18	.	DNA	231	short	391	high	553077	pericentromeric	75297	.	.	.	.	.	.	.
Chr1	15357279	15357685	AT1TE50675	.	-	ATREP18	.	DNA	407	short	391	high	553308	pericentromeric	74890	.	.	.	.	.	.	.
Chr1	15357957	15358683	AT1TE50680	.	-	ATREP18	.	DNA	727	short	391	high	553986	pericentromeric	73892	.	.	.	.	.	.	.
Chr1	15358684	15360924	AT1TE50685	.	-	ATREP18	.	DNA	2241	medium	391	high	554713	pericentromeric	71651	.	.	.	.	.	.	.
Chr1	15359927	15360198	AT1TE50690	.	-	ATREP18	.	DNA	272	short	391	high	555956	pericentromeric	72377	.	.	.	.	.	.	.
Chr1	15360925	15361200	AT1TE50695	.	-	ATREP18	.	DNA	276	short	391	high	556954	pericentromeric	71375	.	.	.	.	.	.	.
Chr1	15361201	15367098	AT1TE50700	.	-	ATREP18	.	DNA	5898	long	391	high	557230	pericentromeric	65477	.	.	.	.	.	.	.
Chr1	15361492	15361799	AT1TE50705	.	-	ATREP18	.	DNA	308	short	391	high	557521	pericentromeric	70776	.	.	.	.	.	.	.
Chr1	15363727	15365357	AT1TE50710	.	-	ATREP18	.	DNA	1631	short	391	high	559756	pericentromeric	67218	.	.	.	.	.	.	.
Chr1	15365358	15365573	AT1TE50715	.	-	ATREP18	.	DNA	216	short	391	high	561387	pericentromeric	67002	.	.	.	.	.	.	.
Chr1	15365574	15366243	AT1TE50720	.	-	ATREP18	.	DNA	670	short	391	high	561603	pericentromeric	66332	.	.	.	.	.	.	.
Chr1	15366244	15366405	AT1TE50725	.	-	ATREP18	.	DNA	162	short	391	high	562273	pericentromeric	66170	.	.	.	.	.	.	.
Chr1	15367099	15367337	AT1TE50730	.	-	ATREP18	.	DNA	239	short	391	high	563128	pericentromeric	65238	.	.	.	.	.	.	.
Chr1	15367338	15368063	AT1TE50735	.	-	ATREP18	.	DNA	726	short	391	high	563367	pericentromeric	64512	.	.	.	.	.	.	.
Chr1	15368663	15372351	AT1TE50740	.	-	ATREP18	.	DNA	3689	medium	391	high	564692	pericentromeric	60224	.	.	.	.	.	.	.
Chr1	15369647	15371985	AT1TE50745	.	-	ATREP18	.	DNA	2339	medium	391	high	565676	pericentromeric	60590	.	.	.	.	.	.	.
Chr1	15372964	15375160	AT1TE50750	.	-	ATREP18	.	DNA	2197	medium	391	high	568993	pericentromeric	57415	.	.	.	.	.	.	.
Chr1	15373963	15374535	AT1TE50755	.	-	ATREP18	.	DNA	573	short	391	high	569992	pericentromeric	58040	.	.	.	.	.	.	.
Chr1	15375258	15375889	AT1TE50760	.	+	ATREP18	.	DNA	632	short	391	high	571287	pericentromeric	56686	.	.	.	.	.	.	.
Chr1	15376087	15378181	AT1TE50765	.	-	ATREP18	.	DNA	2095	medium	391	high	572116	pericentromeric	54394	.	.	.	.	.	.	.
Chr1	15378527	15378552	AT1TE50770	.	+	ATLANTYS2	Gypsy	LTR	26	tiny	179	medium	574556	pericentromeric	54023	.	.	.	.	.	.	.
Chr1	15378553	15387615	AT1TE50775	.	+	ATLANTYS2	Gypsy	LTR	9063	long	179	medium	574582	pericentromeric	44960	.	.	.	.	.	.	.
Chr1	15383890	15384020	AT1TE50780	.	+	ATLANTYS2	Gypsy	LTR	131	short	179	medium	579919	pericentromeric	48555	.	.	.	.	.	.	.
Chr1	15387616	15388695	AT1TE50790	.	-	ATREP18	.	DNA	1080	short	391	high	583645	pericentromeric	43880	.	.	.	.	.	.	.
Chr1	15389287	15398355	AT1TE50795	.	-	ATREP18	.	DNA	9068	long	391	high	585317	pericentromeric	34220	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	15390263	15394797	AT1TE50800	.	+	ATENSPM9	En-Spm	DNA	4535	medium	97	medium	586292	pericentromeric	37778	.	.	.	.	.	.	.
Chr1	15394956	15395627	AT1TE50805	.	-	ATREP18	.	DNA	672	short	391	high	590985	pericentromeric	36948	.	.	.	.	.	.	.
Chr1	15398356	15406124	AT1TE50810	.	+	ATLANTYS2	Gypsy	LTR	7769	long	179	medium	594385	pericentromeric	26451	.	.	.	.	.	.	.
Chr1	15406125	15406504	AT1TE50815	.	-	ATREP18	.	DNA	380	short	391	high	602154	pericentromeric	26071	.	.	.	.	.	.	.
Chr1	15406505	15406539	AT1TE50820	.	-	ATREP18	.	DNA	35	tiny	391	high	602534	pericentromeric	26036	.	.	.	.	.	.	.
Chr1	15406540	15406647	AT1TE50825	.	-	ATREP18	.	DNA	108	short	391	high	602569	pericentromeric	25928	.	.	.	.	.	.	.
Chr1	15406648	15408336	AT1TE50830	.	-	ATREP18	.	DNA	1689	short	391	high	602677	pericentromeric	24239	.	.	.	.	.	.	.
Chr1	15408337	15408480	AT1TE50835	.	-	ATREP18	.	DNA	144	short	391	high	604366	pericentromeric	24095	.	.	.	.	.	.	.
Chr1	15408805	15408989	AT1TE50840	.	-	ATREP18	.	DNA	185	short	391	high	604834	pericentromeric	23586	.	.	.	.	.	.	.
Chr1	15409979	15410100	AT1TE50845	.	-	ATREP18	.	DNA	122	short	391	high	606008	pericentromeric	22475	.	.	.	.	.	.	.
Chr1	15410104	15411044	AT1TE50850	.	+	ATHILA6A	Gypsy	LTR	941	short	247	high	606133	pericentromeric	21531	.	.	.	.	.	.	.
Chr1	15412109	15412720	AT1TE50855	.	-	ATREP18	.	DNA	612	short	391	high	608138	pericentromeric	19855	.	.	.	.	.	.	.
Chr1	15412723	15420826	AT1TE50860	.	+	ATHILA6A	Gypsy	LTR	8103	long	247	high	608753	pericentromeric	11749	no-RdDM	no-RdDM	ExpressedAndAnnotated	15420375,15420375	15420651,15420726	+,+	transcript_id-"fc378684-165e-4722-be17-cc783bb4bfdf|16",transcript_id-"857c93a5-cfd5-406b-9e48-441df46bb826|3"
Chr1	15418822	15418872	AT1TE50865	.	+	ATHILA7A	Gypsy	LTR	50	tiny	31	low	614852	pericentromeric	13703	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15419074	15419174	AT1TE50870	.	+	ATHILA6A	Gypsy	LTR	100	short	247	high	615104	pericentromeric	13401	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15419174	15420289	AT1TE50875	.	+	ATHILA2	Gypsy	LTR	1115	short	413	high	615204	pericentromeric	12286	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	15420826	15420951	AT1TE50880	.	+	ATHILA6A	Gypsy	LTR	125	short	247	high	616856	pericentromeric	11624	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	15420951	15421858	AT1TE50885	.	-	ATREP18	.	DNA	907	short	391	high	616981	pericentromeric	10717	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	15421858	15428011	AT1TE50890	.	-	ATREP18	.	DNA	6153	long	391	high	617888	pericentromeric	4564	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15422079	15423710	AT1TE50895	.	+	ATHILA2	Gypsy	LTR	1631	short	413	high	618109	pericentromeric	8865	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	15424982	15426176	AT1TE50900	.	+	ATHILA4	Gypsy	LTR	1194	short	250	high	621012	pericentromeric	6399	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	15426176	15427796	AT1TE50905	.	-	ATHILA5	Gypsy	LTR	1620	short	131	medium	622206	pericentromeric	4779	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15428305	15428469	AT1TE50910	.	-	ATREP18	.	DNA	164	short	391	high	624335	pericentromeric	4106	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15428469	15429555	AT1TE50915	.	-	ATHILA4A	Gypsy	LTR	1086	short	310	high	624499	pericentromeric	3020	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15429555	15429645	AT1TE50920	.	-	ATREP18	.	DNA	90	tiny	391	high	625585	pericentromeric	2930	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15429645	15430414	AT1TE50925	.	-	ATREP18	.	DNA	769	short	391	high	625675	pericentromeric	2161	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15430414	15430652	AT1TE50930	.	-	ATREP18	.	DNA	238	short	391	high	626444	pericentromeric	1923	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15430652	15431406	AT1TE50935	.	-	ATREP18	.	DNA	754	short	391	high	626682	pericentromeric	1169	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	15431673	15431701	AT1TE50940	.	-	ATREP18	.	DNA	28	tiny	391	high	627703	pericentromeric	874	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15431701	15433006	AT1TE50945	.	-	ATHILA2	Gypsy	LTR	1305	short	413	high	627731	pericentromeric	0	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15433014	15433050	AT1TE50950	.	-	ATHILA6A	Gypsy	LTR	36	tiny	247	high	629044	pericentromeric	0	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr1	15434786	15435565	AT1TE50955	.	-	ATREP18	.	DNA	779	short	391	high	630816	pericentromeric	112	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15435172	15435290	AT1TE50960	.	-	ATREP18	.	DNA	118	short	391	high	631202	pericentromeric	498	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	15436435	15436642	AT1TE50965	.	+	ATREP18	.	DNA	207	short	391	high	632465	pericentromeric	1761	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	15438174	15438493	AT1TE50970	.	+	ATLANTYS2	Gypsy	LTR	319	short	179	medium	634204	pericentromeric	3500	no-RdDM	no-CHH	.	.	.	.	.
Chr1	15438845	15440903	AT1TE50975	.	+	ATLANTYS1	Gypsy	LTR	2058	medium	153	medium	634875	pericentromeric	4171	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	15441212	15441294	AT1TE50980	.	+	ATLANTYS2	Gypsy	LTR	82	tiny	179	medium	637242	pericentromeric	6538	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	15441563	15443621	AT1TE50985	.	-	ATGP10	Gypsy	LTR	2058	medium	165	medium	637593	pericentromeric	6889	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	15444294	15444487	AT1TE50990	.	-	ATHILA3	Gypsy	LTR	193	short	243	high	640324	pericentromeric	9620	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	15444491	15444814	AT1TE50995	.	+	ATGP10	Gypsy	LTR	323	short	165	medium	640521	pericentromeric	9817	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	15445238	15448968	AT1TE51000	.	-	ATHILA2	Gypsy	LTR	3730	medium	413	high	641268	pericentromeric	10564	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	15448968	15450627	AT1TE51005	.	-	ATHILA6B	Gypsy	LTR	1659	short	134	medium	644998	pericentromeric	14294	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	15450628	15450822	AT1TE51010	.	-	ATHILA2	Gypsy	LTR	195	short	413	high	646657	pericentromeric	15953	.	.	.	.	.	.	.
Chr1	15450823	15450854	AT1TE51015	.	-	ATHILA6B	Gypsy	LTR	32	tiny	134	medium	646852	pericentromeric	16148	.	.	.	.	.	.	.
Chr1	15450854	15454302	AT1TE51020	.	-	ATHILA2	Gypsy	LTR	3448	medium	413	high	646884	pericentromeric	16180	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	15454302	15454391	AT1TE51025	.	-	ATHILA2	Gypsy	LTR	89	tiny	413	high	650332	pericentromeric	19628	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	15454824	15454913	AT1TE51030	.	+	ATGP10	Gypsy	LTR	89	tiny	165	medium	650854	pericentromeric	20150	no-RdDM	no-CHH	.	.	.	.	.
Chr1	15455170	15455487	AT1TE51035	.	+	ATDNA12T3A	.	DNA	317	short	22	low	651200	pericentromeric	20496	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	15455487	15486506	AT1TE51040	.	+	ATHILA6A	Gypsy	LTR	31019	long	247	high	651517	pericentromeric	20813	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	15486510	15491848	AT1TE51045	.	-	ATHILA6B	Gypsy	LTR	5338	long	134	medium	682540	pericentromeric	51836	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	15491849	15499762	AT1TE51050	.	+	ATHILA6B	Gypsy	LTR	7913	long	134	medium	687879	pericentromeric	57175	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	15499762	15500387	AT1TE51055	.	+	ATHILA6A	Gypsy	LTR	625	short	247	high	695792	pericentromeric	65088	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	15500387	15500422	AT1TE51060	.	+	ATHILA	Gypsy	LTR	35	tiny	198	medium	696417	pericentromeric	65713	no-CHH	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	15500422	15504894	AT1TE51065	.	+	ATHILA2	Gypsy	LTR	4472	medium	413	high	696452	pericentromeric	65748	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	15504894	15509412	AT1TE51070	.	-	ATHILA6A	Gypsy	LTR	4518	medium	247	high	700924	pericentromeric	70220	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	15509414	15512097	AT1TE51075	.	-	ATGP5	Gypsy	LTR	2683	medium	86	medium	705444	pericentromeric	70325	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	15512097	15519432	AT1TE51080	.	-	ATHILA2	Gypsy	LTR	7335	long	413	high	708127	pericentromeric	62990	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	15519450	15522308	AT1TE51085	.	-	ATGP5	Gypsy	LTR	2858	medium	86	medium	715480	pericentromeric	60114	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	15523591	15524050	AT1TE51090	.	+	ATGP10	Gypsy	LTR	459	short	165	medium	719621	pericentromeric	58372	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	15524050	15524077	AT1TE51095	.	-	ATHILA3	Gypsy	LTR	27	tiny	243	high	720080	pericentromeric	58345	no-RdDM	no-CHH	.	.	.	.	.
Chr1	15524077	15525003	AT1TE51100	.	-	ATHILA3	Gypsy	LTR	926	short	243	high	720107	pericentromeric	57419	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	15525405	15530074	AT1TE51105	.	+	ATENSPM7	En-Spm	DNA	4669	medium	74	medium	721435	pericentromeric	52348	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	15526402	15526425	AT1TE51110	.	+	ATENSPM7	En-Spm	DNA	23	tiny	74	medium	722432	pericentromeric	55997	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	15530074	15533816	AT1TE51120	.	-	ATGP10	Gypsy	LTR	3742	medium	165	medium	726104	pericentromeric	48606	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	15530424	15532919	AT1TE51125	.	-	ATGP10	Gypsy	LTR	2495	medium	165	medium	726454	pericentromeric	49503	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15533860	15533899	AT1TE51130	.	+	ATHILA8B	Gypsy	LTR	39	tiny	78	medium	729890	pericentromeric	48523	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr1	15533899	15534153	AT1TE51135	.	+	ATHILA8A	Gypsy	LTR	254	short	97	medium	729929	pericentromeric	48269	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	15534155	15535457	AT1TE51140	.	+	ATHILA3	Gypsy	LTR	1302	short	243	high	730185	pericentromeric	46965	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	15535457	15535483	AT1TE51145	.	+	ATHILA3	Gypsy	LTR	26	tiny	243	high	731487	pericentromeric	46939	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	15535483	15536104	AT1TE51150	.	-	ATHILA8A	Gypsy	LTR	621	short	97	medium	731513	pericentromeric	46318	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15536119	15546208	AT1TE51155	.	-	ATHILA2	Gypsy	LTR	10089	long	413	high	732149	pericentromeric	36214	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	15546209	15546471	AT1TE51160	.	+	ATHILA4A	Gypsy	LTR	262	short	310	high	742239	pericentromeric	35951	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	15546474	15546509	AT1TE51165	.	+	ATLANTYS2	Gypsy	LTR	35	tiny	179	medium	742504	pericentromeric	35913	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	15546603	15547274	AT1TE51170	.	+	ATLANTYS2	Gypsy	LTR	671	short	179	medium	742633	pericentromeric	35148	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	15547274	15549791	AT1TE51175	.	+	ATLANTYS2	Gypsy	LTR	2517	medium	179	medium	743304	pericentromeric	32631	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	15548453	15548782	AT1TE51180	.	+	ATLANTYS2	Gypsy	LTR	329	short	179	medium	744483	pericentromeric	33640	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	15549795	15550663	AT1TE51185	.	+	ATGP10	Gypsy	LTR	868	short	165	medium	745825	pericentromeric	31759	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	15550663	15554136	AT1TE51190	.	-	ATHILA	Gypsy	LTR	3473	medium	198	medium	746693	pericentromeric	28286	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	15554136	15554229	AT1TE51195	.	-	ATHILA6B	Gypsy	LTR	93	tiny	134	medium	750166	pericentromeric	28193	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	15554229	15554880	AT1TE51200	.	-	ATHILA	Gypsy	LTR	651	short	198	medium	750259	pericentromeric	27542	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15554880	15555163	AT1TE51205	.	-	ATHILA0_I	Gypsy	LTR	283	short	138	medium	750910	pericentromeric	27259	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15555163	15557533	AT1TE51210	.	-	ATHILA	Gypsy	LTR	2370	medium	198	medium	751193	pericentromeric	24889	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15557533	15559659	AT1TE51215	.	-	ATHILA	Gypsy	LTR	2126	medium	198	medium	753563	pericentromeric	22763	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15559659	15559746	AT1TE51220	.	-	ATHILA6B	Gypsy	LTR	87	tiny	134	medium	755689	pericentromeric	22676	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	15559746	15560396	AT1TE51225	.	-	ATHILA	Gypsy	LTR	650	short	198	medium	755776	pericentromeric	22026	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15560396	15560684	AT1TE51230	.	-	ATHILA6B	Gypsy	LTR	288	short	134	medium	756426	pericentromeric	21738	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15560684	15569184	AT1TE51235	.	-	ATHILA	Gypsy	LTR	8500	long	198	medium	756714	pericentromeric	13238	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr1	15561951	15562038	AT1TE51240	.	+	ATGP2N	Gypsy	LTR	87	tiny	54	medium	757981	pericentromeric	20384	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	15562038	15567091	AT1TE51245	.	+	ATGP2N	Gypsy	LTR	5053	long	54	medium	758068	pericentromeric	15331	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr1	15569184	15569643	AT1TE51250	.	-	ATHILA	Gypsy	LTR	459	short	198	medium	765214	pericentromeric	12779	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	15569643	15570478	AT1TE51255	.	+	ATGP10	Gypsy	LTR	835	short	165	medium	765673	pericentromeric	11944	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	15570478	15581789	AT1TE51260	.	+	ATLANTYS2	Gypsy	LTR	11311	long	179	medium	766508	pericentromeric	633	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	15578766	15579787	+	transcript_id-"fec89665-05a4-4f8d-891e-8faee67634ce|3"
Chr1	15572379	15580018	AT1TE51265	.	+	ATGP10	Gypsy	LTR	7639	long	165	medium	768409	pericentromeric	2404	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	15578766	15579787	+	transcript_id-"fec89665-05a4-4f8d-891e-8faee67634ce|3"
Chr1	15581789	15582052	AT1TE51270	.	+	ATHILA4A	Gypsy	LTR	263	short	310	high	777819	pericentromeric	370	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	15582062	15585032	AT1TE51275	.	-	ATGP5	Gypsy	LTR	2970	medium	86	medium	778092	pericentromeric	0	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	15585032	15585119	AT1TE51280	.	-	ATGP5	Gypsy	LTR	87	tiny	86	medium	781062	pericentromeric	0	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	15585147	15586797	AT1TE51285	.	+	ATHILA4A	Gypsy	LTR	1650	short	310	high	781177	pericentromeric	4	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	15586797	15586942	AT1TE51290	.	-	ATHILA8A	Gypsy	LTR	145	short	97	medium	782827	pericentromeric	1654	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	15588987	15590261	AT1TE51295	.	+	ATHILA4A	Gypsy	LTR	1274	short	310	high	785017	pericentromeric	3844	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	15590358	15590406	AT1TE51300	.	+	ATHILA4	Gypsy	LTR	48	tiny	250	high	786388	pericentromeric	5215	no-RdDM	no-CHH	.	.	.	.	.
Chr1	15590406	15594101	AT1TE51305	.	+	ATHILA4C	Gypsy	LTR	3695	medium	206	high	786436	pericentromeric	5263	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr1	15594101	15594925	AT1TE51310	.	+	ATHILA4A	Gypsy	LTR	824	short	310	high	790131	pericentromeric	8958	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	15594925	15598833	AT1TE51315	.	+	ATHILA4D_LTR	Gypsy	LTR	3908	medium	106	medium	790955	pericentromeric	5058	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	15596130	15596723	AT1TE51320	.	+	ATHILA4C	Gypsy	LTR	593	short	206	high	792160	pericentromeric	7168	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	15602068	15602279	AT1TE51330	.	-	ATHILA8A	Gypsy	LTR	211	short	97	medium	798098	pericentromeric	1612	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15606161	15606519	AT1TE51340	.	+	BRODYAGA1A	MuDR	DNA	358	short	586	high	802191	pericentromeric	0	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	15608529	15608627	AT1TE51345	.	-	ATLINE1A	L1	LINE	98	tiny	289	high	804559	pericentromeric	727	no-CHH	no-CHH	.	.	.	.	.
Chr1	15609256	15609514	AT1TE51350	.	+	ATCOPIA66	Copia	LTR	258	short	20	low	805286	pericentromeric	1454	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	15610517	15610626	AT1TE51355	.	-	META1	Copia	LTR	109	short	138	medium	806547	pericentromeric	2715	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	15610626	15615403	AT1TE51360	.	-	ROMANIAT5	Copia	LTR	4777	medium	49	low	806656	pericentromeric	2824	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	15610616	15611014	+	transcript_id-"99e0391c-d8e9-4ff8-b1b2-c427df34d046|4"
Chr1	15615403	15615449	AT1TE51365	.	-	ATCOPIA27	Copia	LTR	46	tiny	19	low	811433	pericentromeric	7601	no-CHH	no-RdDM	.	.	.	.	.
Chr1	15616245	15618055	AT1TE51370	.	-	ATHILA2	Gypsy	LTR	1810	short	413	high	812275	pericentromeric	8443	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	15618055	15618120	AT1TE51375	.	-	ATLINE2	L1	LINE	65	tiny	138	medium	814085	pericentromeric	10253	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15618120	15618170	AT1TE51380	.	-	ATLINEIII	L1	LINE	50	tiny	196	medium	814150	pericentromeric	10318	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	15618170	15622851	AT1TE51385	.	-	ATLINEIII	L1	LINE	4681	medium	196	medium	814200	pericentromeric	10368	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	15622851	15622906	AT1TE51390	.	-	ATLINE2	L1	LINE	55	tiny	138	medium	818881	pericentromeric	15049	no-CHH	no-CHH	.	.	.	.	.
Chr1	15623715	15624445	AT1TE51395	.	-	ATREP3	Helitron	RC	730	short	1439	high	819745	pericentromeric	15913	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	15624445	15624480	AT1TE51400	.	+	ATHILA4	Gypsy	LTR	35	tiny	250	high	820475	pericentromeric	16643	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	15624480	15625637	AT1TE51405	.	+	ATHILA4C	Gypsy	LTR	1157	short	206	high	820510	pericentromeric	16678	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	15625646	15625687	AT1TE51410	.	+	ATHILA4	Gypsy	LTR	41	tiny	250	high	821676	pericentromeric	17844	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	15626584	15627240	AT1TE51415	.	+	TA11	L1	LINE	656	short	157	medium	822614	pericentromeric	18782	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	15627367	15629085	AT1TE51420	.	+	ATLINE1_4	L1	LINE	1718	short	102	medium	823397	pericentromeric	19565	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	15629085	15629702	AT1TE51425	.	+	TA11	L1	LINE	617	short	157	medium	825115	pericentromeric	20469	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15630492	15630985	AT1TE51430	.	-	HELITRONY3	Helitron	RC	493	short	1399	high	826522	pericentromeric	19186	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	15630985	15632195	AT1TE51435	.	+	ATLINE1A	L1	LINE	1210	short	289	high	827015	pericentromeric	17976	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	15632209	15632812	AT1TE51440	.	-	ARNOLDY1	MuDR	DNA	603	short	237	high	828239	pericentromeric	17359	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	15632812	15632889	AT1TE51445	.	-	ATREP4	Helitron	RC	77	tiny	832	high	828842	pericentromeric	17282	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	15633596	15633658	AT1TE51450	.	-	ATGP2N	Gypsy	LTR	62	tiny	54	medium	829626	pericentromeric	16513	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr1	15634351	15634377	AT1TE51455	.	-	HELITRONY3	Helitron	RC	26	tiny	1399	high	830381	pericentromeric	15794	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	15634377	15634434	AT1TE51460	.	-	ARNOLDY1	MuDR	DNA	57	tiny	237	high	830407	pericentromeric	15737	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	15634434	15636526	AT1TE51465	.	-	HELITRONY3	Helitron	RC	2092	medium	1399	high	830464	pericentromeric	13645	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	15636526	15636762	AT1TE51470	.	+	ATREP11	Helitron	RC	236	short	841	high	832556	pericentromeric	13409	no-RdDM	no-CHH	.	.	.	.	.
Chr1	15636762	15639274	AT1TE51475	.	+	ATHILA6A	Gypsy	LTR	2512	medium	247	high	832792	pericentromeric	10897	no-RdDM	no-RdDM	ExpressedAndAnnotated	15638605	15638741	+	transcript_id-"78ecd651-c51c-4b38-a384-788a6362e6ca|13"
Chr1	15639274	15639886	AT1TE51480	.	+	ATGP2N	Gypsy	LTR	612	short	54	medium	835304	pericentromeric	10285	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	15639888	15641103	AT1TE51485	.	+	ATHILA4	Gypsy	LTR	1215	short	250	high	835918	pericentromeric	9068	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	15641319	15641930	AT1TE51490	.	-	HELITRONY1E	Helitron	RC	611	short	447	high	837349	pericentromeric	8241	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	15641930	15642064	AT1TE51495	.	+	HELITRONY1B	Helitron	RC	134	short	414	high	837960	pericentromeric	8107	no-CHH	no-CHH	.	.	.	.	.
Chr1	15642236	15642279	AT1TE51500	.	+	HELITRON4	Helitron	RC	43	tiny	199	medium	838266	pericentromeric	7892	no-CHH	no-CHH	.	.	.	.	.
Chr1	15642279	15642361	AT1TE51505	.	+	ATREP14	Helitron	RC	82	tiny	47	low	838309	pericentromeric	7810	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	15642361	15642413	AT1TE51510	.	+	ATREP14	Helitron	RC	52	tiny	47	low	838391	pericentromeric	7758	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	15642413	15643368	AT1TE51515	.	+	ATREP14	Helitron	RC	955	short	47	low	838443	pericentromeric	6803	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	15643368	15643836	AT1TE51520	.	+	ATGP5	Gypsy	LTR	468	short	86	medium	839398	pericentromeric	6335	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	15643950	15645170	AT1TE51525	.	+	ATHILA7	Gypsy	LTR	1220	short	134	medium	839980	pericentromeric	5001	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	15644538	15644761	AT1TE51530	.	+	ATLINE1A	L1	LINE	223	short	289	high	840568	pericentromeric	5410	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	15645307	15645608	AT1TE51535	.	-	HELITRON2	Helitron	RC	301	short	194	medium	841337	pericentromeric	4563	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	15645800	15646015	AT1TE51540	.	-	ATENSPM5	En-Spm	DNA	215	short	111	medium	841830	pericentromeric	4156	no-RdDM	no-CHH	.	.	.	.	.
Chr1	15646120	15647086	AT1TE51545	.	-	ATHILA4D_LTR	Gypsy	LTR	966	short	106	medium	842150	pericentromeric	3085	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15647088	15647288	AT1TE51550	.	+	ATHILA4A	Gypsy	LTR	200	short	310	high	843118	pericentromeric	2883	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	15647288	15649158	AT1TE51555	.	+	ATHILA4A	Gypsy	LTR	1870	short	310	high	843318	pericentromeric	1013	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15649182	15649875	AT1TE51560	.	-	ATLINE1_4	L1	LINE	693	short	102	medium	845212	pericentromeric	296	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15654342	15656208	AT1TE51570	.	-	ATHILA6A	Gypsy	LTR	1866	short	247	high	850372	pericentromeric	1915	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	15655440,15655444,15655449,15655449	15652834,15652871,15652963,15653305	-,-,-,-	transcript_id-"0ebf0d80-2544-47b6-83a8-c81f272b3eba|7",transcript_id-"bec992e0-8e8c-4065-a8f5-668767ed11c6|8",transcript_id-"b2710505-6c6f-4913-9358-7ef392c5546a|5",transcript_id-"e51c64ba-52bd-4b62-a467-a4663e474ed6|3"
Chr1	15656928	15657481	AT1TE51575	.	+	ATHPOGON1	Pogo	DNA	553	short	174	medium	852958	pericentromeric	4501	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr1	15657481	15661620	AT1TE51580	.	+	ATCOPIA95	Copia	LTR	4139	medium	72	medium	853511	pericentromeric	5054	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr1	15662125	15662168	AT1TE51585	.	+	BRODYAGA1	MuDR	DNA	43	tiny	251	high	858155	pericentromeric	9698	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	15662168	15662410	AT1TE51590	.	+	ATMU10	MuDR	DNA	242	short	87	medium	858198	pericentromeric	9741	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	15662504	15663325	AT1TE51595	.	+	ATMU10	MuDR	DNA	821	short	87	medium	858534	pericentromeric	10077	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	15662678	15663195	AT1TE51600	.	+	ATLANTYS1	Gypsy	LTR	517	short	153	medium	858708	pericentromeric	10251	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	15663353	15664279	AT1TE51605	.	+	HELITRON1	Helitron	RC	926	short	130	medium	859383	pericentromeric	10926	no-RdDM	no-CHH	.	.	.	.	.
Chr1	15664279	15664311	AT1TE51610	.	+	HELITRON1	Helitron	RC	32	tiny	130	medium	860309	pericentromeric	11852	no-RdDM	no-CHH	.	.	.	.	.
Chr1	15665055	15674411	AT1TE51615	.	+	ATLANTYS1	Gypsy	LTR	9356	long	153	medium	861085	pericentromeric	6566	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	15673552	15670752	-	transcript_id-"95f26540-8107-41ad-9a17-d12374aea2f3|4"
Chr1	15674412	15674555	AT1TE51620	.	-	ATMU10	MuDR	DNA	143	short	87	medium	870442	pericentromeric	6422	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	15674569	15674643	AT1TE51625	.	+	HELITRON1	Helitron	RC	74	tiny	130	medium	870599	pericentromeric	6334	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	15674643	15674664	AT1TE51630	.	+	HELITRON1	Helitron	RC	21	tiny	130	medium	870673	pericentromeric	6313	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	15674664	15675483	AT1TE51635	.	+	HELITRON1	Helitron	RC	819	short	130	medium	870694	pericentromeric	5494	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	15675483	15675525	AT1TE51640	.	+	ATREP11	Helitron	RC	42	tiny	841	high	871513	pericentromeric	5452	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	15676216	15683600	AT1TE51645	.	-	ATHILA2	Gypsy	LTR	7384	long	413	high	872246	pericentromeric	0	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr1	15677553	15680600	AT1TE51650	.	+	ATENSPM7	En-Spm	DNA	3047	medium	74	medium	873583	pericentromeric	377	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	15683600	15683790	AT1TE51655	.	-	ATHILA2	Gypsy	LTR	190	short	413	high	879630	pericentromeric	0	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	15685102	15685214	AT1TE51660	.	+	ATENSPM7	En-Spm	DNA	112	short	74	medium	881132	pericentromeric	615	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15685431	15687581	AT1TE51665	.	+	ATENSPM3	En-Spm	DNA	2150	medium	98	medium	881461	pericentromeric	944	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15687581	15687713	AT1TE51670	.	+	ATENSPM7	En-Spm	DNA	132	short	74	medium	883611	pericentromeric	3094	no-RdDM	no-CHH	.	.	.	.	.
Chr1	15687715	15689270	AT1TE51675	.	-	ATDNA2T9C	MuDR	DNA	1555	short	242	high	883745	pericentromeric	3228	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	15689270	15689406	AT1TE51680	.	-	ATDNA2T9C	MuDR	DNA	136	short	242	high	885300	pericentromeric	4783	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	15690798	15692926	AT1TE51685	.	+	ATHILA4A	Gypsy	LTR	2128	medium	310	high	886828	pericentromeric	6311	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	15692926	15697905	AT1TE51690	.	+	ATHILA4A	Gypsy	LTR	4979	medium	310	high	888956	pericentromeric	8439	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	15697905	15698423	AT1TE51695	.	+	ATHILA4A	Gypsy	LTR	518	short	310	high	893935	pericentromeric	13418	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	15698425	15701729	AT1TE51700	.	+	ATGP1	Gypsy	LTR	3304	medium	144	medium	894455	pericentromeric	13938	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr1	15699975	15701631	AT1TE51705	.	+	ATHILA	Gypsy	LTR	1656	short	198	medium	896005	pericentromeric	15082	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr1	15701729	15702009	AT1TE51710	.	+	ATHILA4A	Gypsy	LTR	280	short	310	high	897759	pericentromeric	14704	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	15702009	15702043	AT1TE51715	.	+	ATHILA4D_LTR	Gypsy	LTR	34	tiny	106	medium	898039	pericentromeric	14670	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15703244	15703276	AT1TE51720	.	-	ATGP6	Gypsy	LTR	32	tiny	25	low	899274	pericentromeric	13437	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	15703276	15703679	AT1TE51725	.	-	ATGP7	Gypsy	LTR	403	short	47	low	899306	pericentromeric	13034	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	15703679	15703823	AT1TE51730	.	-	ATGP5	Gypsy	LTR	144	short	86	medium	899709	pericentromeric	12890	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	15703959	15715037	AT1TE51735	.	-	ATHILA2	Gypsy	LTR	11078	long	413	high	899989	pericentromeric	1676	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	15709971	15704939	-	transcript_id-"76854c9f-2325-4192-8abe-e041b3aae92a|12"
Chr1	15715050	15715611	AT1TE51740	.	-	ATGP6	Gypsy	LTR	561	short	25	low	911080	pericentromeric	1102	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	15717179	15719722	AT1TE51745	.	+	ATHILA4A	Gypsy	LTR	2543	medium	310	high	913209	pericentromeric	10	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	15719722	15720075	AT1TE51750	.	+	ATHILA4A	Gypsy	LTR	353	short	310	high	915752	pericentromeric	2553	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	15721177	15721254	AT1TE51755	.	-	BRODYAGA1A	MuDR	DNA	77	tiny	586	high	917207	pericentromeric	4008	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	15721254	15721726	AT1TE51760	.	-	ATREP3	Helitron	RC	472	short	1439	high	917284	pericentromeric	4085	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	15721726	15724634	AT1TE51765	.	+	ATCOPIA95	Copia	LTR	2908	medium	72	medium	917756	pericentromeric	4557	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	15725499	15725601	AT1TE51770	.	+	TAG2	HAT	DNA	102	short	86	medium	921529	pericentromeric	8330	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	15725601	15727426	AT1TE51775	.	+	ATHAT1	HAT	DNA	1825	short	105	medium	921631	pericentromeric	8432	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	15727767	15729042	AT1TE51780	.	+	ATCOPIA95	Copia	LTR	1275	short	72	medium	923797	pericentromeric	10598	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	15729564	15729926	AT1TE51785	.	+	BRODYAGA1	MuDR	DNA	362	short	251	high	925594	pericentromeric	12395	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	15729596	15729828	AT1TE51790	.	-	ATMU10	MuDR	DNA	232	short	87	medium	925626	pericentromeric	12427	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	15729926	15730225	AT1TE51795	.	-	ATMU10	MuDR	DNA	299	short	87	medium	925956	pericentromeric	12757	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	15730225	15730870	AT1TE51800	.	+	HELITRONY2	Helitron	RC	645	short	198	medium	926255	pericentromeric	13056	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	15731703	15731875	AT1TE51805	.	+	ATENSPM3	En-Spm	DNA	172	short	98	medium	927733	pericentromeric	14534	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	15732695	15733069	AT1TE51810	.	+	ATENSPM7	En-Spm	DNA	374	short	74	medium	928725	pericentromeric	15526	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	15732819	15732869	AT1TE51815	.	+	ATENSPM3	En-Spm	DNA	50	tiny	98	medium	928849	pericentromeric	15650	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	15733069	15745010	AT1TE51820	.	+	ATENSPM3	En-Spm	DNA	11941	long	98	medium	929099	pericentromeric	15900	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	15735668	15738170	AT1TE51825	.	-	ATHILA4A	Gypsy	LTR	2502	medium	310	high	931698	pericentromeric	18499	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15738170	15742393	AT1TE51830	.	-	ATHILA4	Gypsy	LTR	4223	medium	250	high	934200	pericentromeric	18688	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15745010	15746461	AT1TE51835	.	+	ATENSPM3	En-Spm	DNA	1451	short	98	medium	941040	pericentromeric	14620	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	15746461	15747109	AT1TE51840	.	+	ATENSPM7	En-Spm	DNA	648	short	74	medium	942491	pericentromeric	13972	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	15748098	15750261	AT1TE51845	.	+	ATHILA4A	Gypsy	LTR	2163	medium	310	high	944128	pericentromeric	10820	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	15750263	15755704	AT1TE51850	.	+	ATHILA4A	Gypsy	LTR	5441	long	310	high	946293	pericentromeric	5377	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	15755704	15757547	AT1TE51855	.	+	ATGP1	Gypsy	LTR	1843	short	144	medium	951734	pericentromeric	3534	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	15758390	15758475	AT1TE51860	.	-	ATGP5	Gypsy	LTR	85	tiny	86	medium	954420	pericentromeric	2606	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	15758814	15758846	AT1TE51865	.	-	ATGP6	Gypsy	LTR	32	tiny	25	low	954844	pericentromeric	2235	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr1	15758846	15759249	AT1TE51870	.	-	ATGP7	Gypsy	LTR	403	short	47	low	954876	pericentromeric	1832	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	15760166	15760243	AT1TE51875	.	+	ATHILA4A	Gypsy	LTR	77	tiny	310	high	956196	pericentromeric	838	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	15760243	15761056	AT1TE51880	.	+	ATHILA4A	Gypsy	LTR	813	short	310	high	956273	pericentromeric	25	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	15760711	15760984	AT1TE51885	.	+	RP1_AT	.	DNA	273	short	87	medium	956741	pericentromeric	97	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	15761084	15761176	AT1TE51890	.	+	ATGP1	Gypsy	LTR	92	tiny	144	medium	957114	pericentromeric	0	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	15761280	15761331	AT1TE51895	.	-	ATENSPM2	En-Spm	DNA	51	tiny	114	medium	957310	pericentromeric	4	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15761331	15762254	AT1TE51900	.	-	ATENSPM4	En-Spm	DNA	923	short	50	medium	957361	pericentromeric	55	no-RdDM	no-RdDM	ExpressedAndAnnotated	15762267	15761806	-	transcript_id-"7dcbc151-1415-4577-9119-14a6ac7ce468|3"
Chr1	15762274	15762925	AT1TE51905	.	-	ATENSPM1A	En-Spm	DNA	651	short	77	medium	958304	pericentromeric	998	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	15762943	15766494	AT1TE51910	.	-	ATENSPM4	En-Spm	DNA	3551	medium	50	medium	958973	pericentromeric	1667	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	15764922	15764745	-	transcript_id-"65c8d818-0fe0-4aee-96c3-be9fca41293f|3"
Chr1	15763344	15763527	AT1TE51915	.	+	VANDAL5A	MuDR	DNA	183	short	56	medium	959374	pericentromeric	2068	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	15764451	15764882	AT1TE51920	.	+	ATDNAI27T9C	MuDR	DNA	431	short	108	medium	960481	pericentromeric	3175	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	15764914	15764968	AT1TE51925	.	-	ATDNAI26T9	MuDR	DNA	54	tiny	25	low	960944	pericentromeric	3638	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr1	15765738	15765907	AT1TE51930	.	+	ATDNAI27T9B	MuDR	DNA	169	short	43	low	961768	pericentromeric	4462	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	15765929	15765954	AT1TE51935	.	-	ATENSPM4	En-Spm	DNA	25	tiny	50	medium	961959	pericentromeric	4653	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	15766494	15766539	AT1TE51940	.	-	ATENSPM1	En-Spm	DNA	45	tiny	30	low	962524	pericentromeric	5218	no-RdDM	no-CHH	.	.	.	.	.
Chr1	15766555	15767338	AT1TE51945	.	-	ATENSPM4	En-Spm	DNA	783	short	50	medium	962585	pericentromeric	5279	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	15767338	15768468	AT1TE51950	.	-	ATENSPM1A	En-Spm	DNA	1130	short	77	medium	963368	pericentromeric	6062	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	15768471	15768496	AT1TE51955	.	-	ATENSPM4	En-Spm	DNA	25	tiny	50	medium	964501	pericentromeric	7195	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	15768496	15770736	AT1TE51960	.	-	ATENSPM4	En-Spm	DNA	2240	medium	50	medium	964526	pericentromeric	7220	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	15770028	15768657	-	transcript_id-"0c64744d-48df-4325-bc94-8b0d96c29f5b|3"
Chr1	15770763	15771086	AT1TE51965	.	+	ATLINEIII	L1	LINE	323	short	196	medium	966793	pericentromeric	9487	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	15771086	15772102	AT1TE51970	.	-	ATHILA4	Gypsy	LTR	1016	short	250	high	967116	pericentromeric	9810	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	15772102	15772532	AT1TE51975	.	-	ATENSPM4	En-Spm	DNA	430	short	50	medium	968132	pericentromeric	10826	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	15772545	15772974	AT1TE51980	.	+	HELITRON4	Helitron	RC	429	short	199	medium	968575	pericentromeric	11269	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	15772984	15790136	AT1TE51985	.	+	HELITRON4	Helitron	RC	17152	long	199	medium	969014	pericentromeric	11708	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	15784487	15786430	AT1TE51990	.	-	ATHILA6A	Gypsy	LTR	1943	short	247	high	980517	pericentromeric	23211	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	15790136	15791906	AT1TE52000	.	-	ATHILA2	Gypsy	LTR	1770	short	413	high	986166	pericentromeric	28860	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15791916	15792668	AT1TE52005	.	+	HELITRON4	Helitron	RC	752	short	199	medium	987946	pericentromeric	30640	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15792668	15794826	AT1TE52010	.	-	ATENSPM2	En-Spm	DNA	2158	medium	114	medium	988698	pericentromeric	31392	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	15794826	15795675	AT1TE52015	.	-	ATENSPM4	En-Spm	DNA	849	short	50	medium	990856	pericentromeric	33550	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15795675	15799513	AT1TE52020	.	+	ARNOLD2	MuDR	DNA	3838	medium	68	medium	991705	pericentromeric	34399	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	15799513	15807462	AT1TE52025	.	+	ATGP1	Gypsy	LTR	7949	long	144	medium	995543	pericentromeric	38237	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	15807462	15807869	AT1TE52030	.	+	ARNOLD2	MuDR	DNA	407	short	68	medium	1003492	pericentromeric	46186	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	15807869	15808308	AT1TE52035	.	-	ATHILA4A	Gypsy	LTR	439	short	310	high	1003899	pericentromeric	46593	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15808308	15809636	AT1TE52040	.	+	ATGP1	Gypsy	LTR	1328	short	144	medium	1004338	pericentromeric	47032	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	15809636	15810041	AT1TE52045	.	+	ARNOLD2	MuDR	DNA	405	short	68	medium	1005666	pericentromeric	48360	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	15810041	15811238	AT1TE52050	.	-	ATHILA4	Gypsy	LTR	1197	short	250	high	1006071	pericentromeric	48765	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	15811238	15813218	AT1TE52055	.	+	ARNOLD3	MuDR	DNA	1980	short	45	low	1007268	pericentromeric	49962	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	15811981	15812054	AT1TE52060	.	+	ARNOLD3	MuDR	DNA	73	tiny	45	low	1008011	pericentromeric	50705	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	15813227	15813315	AT1TE52065	.	-	ATCOPIA49	Copia	LTR	88	tiny	34	low	1009257	pericentromeric	51951	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	15813315	15814443	AT1TE52070	.	-	ATCOPIA49	Copia	LTR	1128	short	34	low	1009345	pericentromeric	52039	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	15815568	15816220	AT1TE52075	.	+	ATGP8	Gypsy	LTR	652	short	92	medium	1011598	pericentromeric	54292	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	15816274	15816321	AT1TE52080	.	-	ATCOPIA49	Copia	LTR	47	tiny	34	low	1012304	pericentromeric	54998	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	15816321	15821314	AT1TE52085	.	-	ATCOPIA49	Copia	LTR	4993	medium	34	low	1012351	pericentromeric	55045	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	15816972	15818102	AT1TE52090	.	+	ATHILA4	Gypsy	LTR	1130	short	250	high	1013002	pericentromeric	55696	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15819545	15821124	AT1TE52095	.	+	ATHILA8A	Gypsy	LTR	1579	short	97	medium	1015575	pericentromeric	58269	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	15821314	15821410	AT1TE52100	.	-	ATHILA4C	Gypsy	LTR	96	tiny	206	high	1017344	pericentromeric	60038	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15821412	15847509	AT1TE52105	.	-	ATHILA2	Gypsy	LTR	26097	long	413	high	1017442	pericentromeric	44002	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	15824398,15835367	15822380,15834559	-,-	transcript_id-"3dd56e48-6ad3-49c2-a1cd-9e87813fe2e5|5",transcript_id-"86f586a0-2516-49c5-b807-17d569e0865c|3"
Chr1	15822575	15826633	AT1TE52110	.	-	ATHILA2	Gypsy	LTR	4058	medium	413	high	1018605	pericentromeric	61299	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	15826633	15826666	AT1TE52115	.	-	ATHILA2	Gypsy	LTR	33	tiny	413	high	1022663	pericentromeric	64845	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	15826666	15827286	AT1TE52120	.	-	ATHILA2	Gypsy	LTR	620	short	413	high	1022696	pericentromeric	64225	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	15827286	15838845	AT1TE52125	.	-	ATHILA2	Gypsy	LTR	11559	long	413	high	1023316	pericentromeric	52666	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	15835367	15834559	-	transcript_id-"86f586a0-2516-49c5-b807-17d569e0865c|3"
Chr1	15838846	15838878	AT1TE52130	.	-	ATHILA2	Gypsy	LTR	33	tiny	413	high	1034875	pericentromeric	52633	.	.	.	.	.	.	.
Chr1	15838878	15839498	AT1TE52135	.	-	ATHILA2	Gypsy	LTR	620	short	413	high	1034908	pericentromeric	52013	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	15847509	15852729	AT1TE52160	.	-	ATHILA4A	Gypsy	LTR	5220	long	310	high	1043539	pericentromeric	38782	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr1	15851016	15851382	AT1TE52165	.	-	ATHILA4A	Gypsy	LTR	366	short	310	high	1047046	pericentromeric	40129	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	15852729	15855572	AT1TE52170	.	-	ATCOPIA49	Copia	LTR	2843	medium	34	low	1048759	pericentromeric	35939	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	15856384	15855178	-	transcript_id-"70ac3388-fc12-4fab-8d6e-fe14a42262c3|3"
Chr1	15852915	15854122	AT1TE52175	.	+	ATHILA4B_LTR	Gypsy	LTR	1207	short	143	medium	1048945	pericentromeric	37389	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	15855572	15856213	AT1TE52180	.	+	ARNOLD4	MuDR	DNA	641	short	23	low	1051602	pericentromeric	35298	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	15856384	15855178	-	transcript_id-"70ac3388-fc12-4fab-8d6e-fe14a42262c3|3"
Chr1	15856511	15856539	AT1TE52185	.	-	BRODYAGA1A	MuDR	DNA	28	tiny	586	high	1052541	pericentromeric	34972	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	15856539	15857196	AT1TE52190	.	-	ATREP10D	Helitron	RC	657	short	1295	high	1052569	pericentromeric	34315	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	15856630	15856849	AT1TE52195	.	+	BRODYAGA1A	MuDR	DNA	219	short	586	high	1052660	pericentromeric	34662	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	15857270	15872649	AT1TE52200	.	+	VANDAL4	MuDR	DNA	15379	long	102	medium	1053300	pericentromeric	18862	no-RdDM	no-RdDM	ExpressedAndAnnotated	15868721,15868721,15868721,15868725,15868725,15868725,15868725,15868725,15868725	15871401,15871857,15871868,15871399,15871850,15871856,15871907,15871917,15871917	+,+,+,+,+,+,+,+,+	transcript_id-"c00f35e2-957f-4592-b19d-610f03a44105|11",transcript_id-"b4d619f3-4a8b-4287-874b-604e83b2eaf7|13",transcript_id-"3fd5933b-0f2c-40e9-b44e-2ad55a4449c5|27",transcript_id-"734b1634-bdbd-4a8a-a59d-5f1925632d3a|6",transcript_id-"792d7784-c31b-40c3-86aa-f4ed9ab5dadb|8",transcript_id-"b17edbdf-08fc-4094-ac36-68f2c7709bb7|7",transcript_id-"b3d93c3f-80ea-4144-b27f-9c09d00338cd|6",transcript_id-"2ee47275-ca27-48e9-8653-f7b9ad88d092|5",transcript_id-"7d84e7c1-bf0e-419a-a42d-8fd66f16f3cc|5"
Chr1	15867720	15871376	AT1TE52205	.	+	ATENSPM1	En-Spm	DNA	3656	medium	30	low	1063750	pericentromeric	20135	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	15868721,15868721,15868721,15868725,15868725,15868725,15868725,15868725,15868725	15871401,15871857,15871868,15871399,15871850,15871856,15871907,15871917,15871917	+,+,+,+,+,+,+,+,+	transcript_id-"c00f35e2-957f-4592-b19d-610f03a44105|11",transcript_id-"b4d619f3-4a8b-4287-874b-604e83b2eaf7|13",transcript_id-"3fd5933b-0f2c-40e9-b44e-2ad55a4449c5|27",transcript_id-"734b1634-bdbd-4a8a-a59d-5f1925632d3a|6",transcript_id-"792d7784-c31b-40c3-86aa-f4ed9ab5dadb|8",transcript_id-"b17edbdf-08fc-4094-ac36-68f2c7709bb7|7",transcript_id-"b3d93c3f-80ea-4144-b27f-9c09d00338cd|6",transcript_id-"2ee47275-ca27-48e9-8653-f7b9ad88d092|5",transcript_id-"7d84e7c1-bf0e-419a-a42d-8fd66f16f3cc|5"
Chr1	15871658	15872288	AT1TE52210	.	+	ATENSPM1	En-Spm	DNA	630	short	30	low	1067688	pericentromeric	19223	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	15872654	15872969	AT1TE52215	.	+	ATMU4	MuDR	DNA	315	short	14	low	1068684	pericentromeric	18542	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15872971	15879297	AT1TE52220	.	+	VANDAL4	MuDR	DNA	6326	long	102	medium	1069001	pericentromeric	12214	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	15875263	15875308	AT1TE52225	.	+	VANDAL4	MuDR	DNA	45	tiny	102	medium	1071293	pericentromeric	16203	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15879297	15879390	AT1TE52235	.	-	META1	Copia	LTR	93	tiny	138	medium	1075327	pericentromeric	12121	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	15879390	15882768	AT1TE52240	.	+	ATREP3	Helitron	RC	3378	medium	1439	high	1075420	pericentromeric	8743	no-CHH	no-CHH	.	.	.	.	.
Chr1	15880198	15880271	AT1TE52245	.	-	ATREP10D	Helitron	RC	73	tiny	1295	high	1076228	pericentromeric	11240	no-CHH	no-CHH	.	.	.	.	.
Chr1	15880678	15880736	AT1TE52250	.	+	ATREP10D	Helitron	RC	58	tiny	1295	high	1076708	pericentromeric	10775	no-CHH	no-CHH	.	.	.	.	.
Chr1	15880736	15880940	AT1TE52255	.	+	ATREP1	Helitron	RC	204	short	498	high	1076766	pericentromeric	10571	no-CHH	no-CHH	.	.	.	.	.
Chr1	15882768	15883133	AT1TE52260	.	-	BRODYAGA1A	MuDR	DNA	365	short	586	high	1078798	pericentromeric	8378	no-CHH	no-CHH	.	.	.	.	.
Chr1	15883133	15883368	AT1TE52265	.	+	ATREP10A	Helitron	RC	235	short	279	high	1079163	pericentromeric	8143	no-CHH	no-CHH	.	.	.	.	.
Chr1	15885590	15885674	AT1TE52270	.	-	META1	Copia	LTR	84	tiny	138	medium	1081620	pericentromeric	5837	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr1	15886142	15886308	AT1TE52275	.	-	ATREP10D	Helitron	RC	166	short	1295	high	1082172	pericentromeric	5203	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	15886308	15887099	AT1TE52280	.	+	TNAT2A	.	DNA	791	short	38	low	1082338	pericentromeric	4412	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	15887099	15887337	AT1TE52285	.	-	HELITRONY1E	Helitron	RC	238	short	447	high	1083129	pericentromeric	4174	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr1	15887700	15887859	AT1TE52290	.	-	ATHATN1	HAT	DNA	159	short	69	medium	1083730	pericentromeric	3652	no-CHH	no-CHH	.	.	.	.	.
Chr1	15888574	15889438	AT1TE52295	.	-	ATREP3	Helitron	RC	864	short	1439	high	1084604	pericentromeric	2073	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15888798	15889209	AT1TE52300	.	-	ATREP9	Helitron	RC	411	short	201	high	1084828	pericentromeric	2302	no-RdDM	no-CHH	.	.	.	.	.
Chr1	15889802	15889913	AT1TE52305	.	-	ATREP10	Helitron	RC	111	short	63	medium	1085832	pericentromeric	1598	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	15890199	15891183	AT1TE52310	.	+	TAG3N1	HAT	DNA	984	short	97	medium	1086229	pericentromeric	328	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	15890484	15890603	AT1TE52315	.	+	TAG1	HAT	DNA	119	short	28	low	1086514	pericentromeric	908	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	15890691	15890925	AT1TE52320	.	+	ATMU10	MuDR	DNA	234	short	87	medium	1086721	pericentromeric	586	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	15901345	15904093	AT1TE52350	.	-	ATREP10D	Helitron	RC	2748	medium	1295	high	1097375	pericentromeric	1406	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	15904093	15904127	AT1TE52355	.	+	ATREP4	Helitron	RC	34	tiny	832	high	1100123	pericentromeric	4154	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	15905243	15906048	AT1TE52360	.	-	HELITRONY1D	Helitron	RC	805	short	756	high	1101273	pericentromeric	5304	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	15906048	15906574	AT1TE52365	.	+	ATHPOGON1	Pogo	DNA	526	short	174	medium	1102078	pericentromeric	6109	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	15906587	15906632	AT1TE52370	.	+	ATREP4	Helitron	RC	45	tiny	832	high	1102617	pericentromeric	6648	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	15906632	15907491	AT1TE52375	.	-	ATREP10D	Helitron	RC	859	short	1295	high	1102662	pericentromeric	6693	no-CHH	no-CHH	.	.	.	.	.
Chr1	15908954	15909053	AT1TE52380	.	+	VANDAL12	MuDR	DNA	99	tiny	37	low	1104984	pericentromeric	9015	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	15909053	15909855	AT1TE52385	.	+	VANDAL9	MuDR	DNA	802	short	43	low	1105083	pericentromeric	9114	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	15910286	15910331	AT1TE52390	.	+	ATGP5	Gypsy	LTR	45	tiny	86	medium	1106316	pericentromeric	10347	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	15910331	15910385	AT1TE52395	.	+	ATGP5	Gypsy	LTR	54	tiny	86	medium	1106361	pericentromeric	10392	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15910385	15911110	AT1TE52400	.	+	ATGP5	Gypsy	LTR	725	short	86	medium	1106415	pericentromeric	10446	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15910542	15910701	AT1TE52405	.	+	ATGP6	Gypsy	LTR	159	short	25	low	1106572	pericentromeric	10603	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	15910701	15910723	AT1TE52410	.	+	ATGP6	Gypsy	LTR	22	tiny	25	low	1106731	pericentromeric	10762	no-CHH	no-RdDM	.	.	.	.	.
Chr1	15911494	15911534	AT1TE52415	.	+	VANDAL12	MuDR	DNA	40	tiny	37	low	1107524	pericentromeric	11555	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	15911534	15917462	AT1TE52420	.	+	VANDAL11	MuDR	DNA	5928	long	18	low	1107564	pericentromeric	9524	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	15914047	15914385	AT1TE52425	.	+	VANDAL9	MuDR	DNA	338	short	43	low	1110077	pericentromeric	12601	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	15917462	15917509	AT1TE52435	.	+	VANDAL9	MuDR	DNA	47	tiny	43	low	1113492	pericentromeric	9477	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	15918025	15918148	AT1TE52440	.	-	ATMUNX1	MuDR	DNA	123	short	155	medium	1114055	pericentromeric	8838	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	15918408	15918615	AT1TE52445	.	+	ATHATN5	HAT	DNA	207	short	42	low	1114438	pericentromeric	8371	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	15919707	15919927	AT1TE52450	.	-	VANDAL12	MuDR	DNA	220	short	37	low	1115737	pericentromeric	7059	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	15920613	15920641	AT1TE52455	.	-	VANDAL9	MuDR	DNA	28	tiny	43	low	1116643	pericentromeric	6345	no-CHH	no-RdDM	.	.	.	.	.
Chr1	15920641	15920881	AT1TE52460	.	-	VANDAL12	MuDR	DNA	240	short	37	low	1116671	pericentromeric	6105	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	15920881	15920962	AT1TE52465	.	-	VANDAL9	MuDR	DNA	81	tiny	43	low	1116911	pericentromeric	6024	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	15921921	15922201	AT1TE52470	.	+	ATREP1	Helitron	RC	280	short	498	high	1117951	pericentromeric	4785	no-CHH	no-CHH	.	.	.	.	.
Chr1	15922201	15922545	AT1TE52475	.	+	ATREP10C	Helitron	RC	344	short	123	medium	1118231	pericentromeric	4441	no-CHH	no-CHH	.	.	.	.	.
Chr1	15922949	15923689	AT1TE52480	.	+	HELITRONY3	Helitron	RC	740	short	1399	high	1118979	pericentromeric	3297	no-CHH	no-CHH	.	.	.	.	.
Chr1	15923689	15923716	AT1TE52485	.	-	ATREP5	Helitron	RC	27	tiny	624	high	1119719	pericentromeric	3270	no-CHH	no-CHH	.	.	.	.	.
Chr1	15925675	15925987	AT1TE52490	.	-	ATHPOGON1	Pogo	DNA	312	short	174	medium	1121705	pericentromeric	999	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	15926756	15926879	AT1TE52495	.	-	ATLINE1A	L1	LINE	123	short	289	high	1122786	pericentromeric	107	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	15935439	15935710	AT1TE52520	.	+	RathE2_cons	.	RathE2_cons	271	short	74	medium	1131469	pericentromeric	311	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	15939234	15939329	AT1TE52530	.	-	ATREP3	Helitron	RC	95	tiny	1439	high	1135264	pericentromeric	542	PolIV-and-RDR6-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	15939329	15941469	AT1TE52535	.	+	ATREP3	Helitron	RC	2140	medium	1439	high	1135359	pericentromeric	637	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	15941484	15942102	AT1TE52540	.	-	ATREP10D	Helitron	RC	618	short	1295	high	1137514	pericentromeric	2792	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	15944778	15944858	AT1TE52545	.	-	ATREP3	Helitron	RC	80	tiny	1439	high	1140808	pericentromeric	6086	no-CHH	no-CHH	.	.	.	.	.
Chr1	15944858	15945882	AT1TE52550	.	-	HELITRONY1B	Helitron	RC	1024	short	414	high	1140888	pericentromeric	6166	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	15945882	15945998	AT1TE52555	.	-	HELITRONY1B	Helitron	RC	116	short	414	high	1141912	pericentromeric	7190	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	15947053	15947121	AT1TE52560	.	-	ATREP15	Helitron	RC	68	tiny	1003	high	1143083	pericentromeric	8361	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	15947121	15947177	AT1TE52565	.	+	ATREP4	Helitron	RC	56	tiny	832	high	1143151	pericentromeric	8429	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	15947177	15949473	AT1TE52570	.	+	ATREP3	Helitron	RC	2296	medium	1439	high	1143207	pericentromeric	8485	no-CHH	no-CHH	.	.	.	.	.
Chr1	15949473	15949795	AT1TE52575	.	+	ATREP4	Helitron	RC	322	short	832	high	1145503	pericentromeric	10781	no-CHH	no-CHH	.	.	.	.	.
Chr1	15949795	15949822	AT1TE52580	.	+	ATREP6	Helitron	RC	27	tiny	181	medium	1145825	pericentromeric	11103	no-CHH	no-CHH	.	.	.	.	.
Chr1	15949822	15949965	AT1TE52585	.	-	ATDNA2T9C	MuDR	DNA	143	short	242	high	1145852	pericentromeric	11130	no-CHH	no-CHH	.	.	.	.	.
Chr1	15950603	15958318	AT1TE52590	.	-	ATENSPM2	En-Spm	DNA	7715	long	114	medium	1146633	pericentromeric	8062	no-RdDM	no-RdDM	ExpressedAndAnnotated	15954277,15954277	15951216,15951226	-,-	transcript_id-"ab15f727-6eb9-47eb-98a3-50fc7ad83a23|9",transcript_id-"31b974cf-5c99-4cd8-b10c-d1d58d34a6a8|69"
Chr1	15958806	15959344	AT1TE52595	.	-	VANDAL3	MuDR	DNA	538	short	177	medium	1154836	pericentromeric	7036	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15959794	15959908	AT1TE52600	.	+	ARNOLDY2	MuDR	DNA	114	short	288	high	1155824	pericentromeric	6472	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	15959910	15961579	AT1TE52605	.	+	HELITRONY1A	Helitron	RC	1669	short	271	high	1155940	pericentromeric	4801	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	15961579	15965042	AT1TE52610	.	+	ATENSPM2	En-Spm	DNA	3463	medium	114	medium	1157609	pericentromeric	1338	no-RdDM	no-RdDM	ExpressedAndAnnotated	15962066,15962066,15962066,15962066,15962066,15962066,15962066,15962068,15962068,15962068	15962376,15963070,15963641,15963716,15963844,15964448,15964516,15962467,15963793,15964511	+,+,+,+,+,+,+,+,+,+	transcript_id-"a80c2bad-22bc-432a-b24f-21aa183fffcc|15",transcript_id-"c728a5b5-d64b-4182-8d3c-89ccfa18dd0f|10",transcript_id-"5ed8845e-a673-4bb2-b6ab-bb4f46125a25|6",transcript_id-"3df2c720-f486-4eaa-a79a-94fb1a7dddab|9",transcript_id-"e359c8d7-4c8f-4b17-a385-5c4481a5d2e0|27",transcript_id-"66015dcb-d6ca-43b8-966c-11567c87c3f4|7",transcript_id-"57978d83-7a60-4007-812c-f6b31e96f25b|17",transcript_id-"ba16a3d9-5abd-4846-addc-4732e67c7575|3",transcript_id-"b366cfd1-0632-4c44-9fac-91a8b6af30ad|44",transcript_id-"7db9c635-f8fa-467b-9028-7f835f143309|8"
Chr1	15965042	15966249	AT1TE52615	.	+	HELITRONY1E	Helitron	RC	1207	short	447	high	1161072	pericentromeric	131	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	15968718	15970140	AT1TE52620	.	-	VANDAL3	MuDR	DNA	1422	short	177	medium	1164748	pericentromeric	479	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	15969162	15969241	AT1TE52625	.	-	VANDAL3	MuDR	DNA	79	tiny	177	medium	1165192	pericentromeric	923	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	15970140	15970583	AT1TE52630	.	-	VANDAL3	MuDR	DNA	443	short	177	medium	1166170	pericentromeric	1901	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	15971265	15971400	AT1TE52635	.	-	ATDNA2T9B	MuDR	DNA	135	short	26	low	1167295	pericentromeric	2088	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15971400	15972067	AT1TE52640	.	-	ATDNA2T9B	MuDR	DNA	667	short	26	low	1167430	pericentromeric	1421	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	15972452	15972490	AT1TE52645	.	-	BRODYAGA2	MuDR	DNA	38	tiny	525	high	1168482	pericentromeric	998	no-CHH	no-RdDM	.	.	.	.	.
Chr1	15972490	15973128	AT1TE52650	.	-	BRODYAGA2	MuDR	DNA	638	short	525	high	1168520	pericentromeric	360	no-CHH	no-CHH	.	.	.	.	.
Chr1	15979579	15979661	AT1TE52670	.	-	ARNOLD2	MuDR	DNA	82	tiny	68	medium	1175609	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	15980797	15980948	AT1TE52675	.	-	ATHATN5	HAT	DNA	151	short	42	low	1176827	pericentromeric	0	PolIV-and-RDR6-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	15984520	15984829	AT1TE52685	.	+	ATHATN10	HAT	DNA	309	short	48	low	1180550	pericentromeric	1192	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	15984829	15985729	AT1TE52690	.	+	ATHATN10	HAT	DNA	900	short	48	low	1180859	pericentromeric	1501	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	15993970,15993952	15985594,15985681	-,-	transcript_id-"fe2796d5-4d88-4136-bca0-4ca038ffaf05|3",transcript_id-"737c622e-4f2f-400b-8cf7-f174df24beda|3"
Chr1	15984877	15985154	AT1TE52695	.	+	ATHAT10	HAT	DNA	277	short	35	low	1180907	pericentromeric	1549	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	15987259	15988791	AT1TE52700	.	+	ATHILA5	Gypsy	LTR	1532	short	131	medium	1183289	pericentromeric	3931	no-RdDM	no-RdDM	ExpressedAndAnnotated	15987590	15987867	+	transcript_id-"718394cb-1597-44c9-b157-2a335e0db058|3"
Chr1	15988791	15988840	AT1TE52705	.	+	ATHILA6A	Gypsy	LTR	49	tiny	247	high	1184821	pericentromeric	5463	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	15991342	15991480	AT1TE52710	.	-	TNAT1A	.	DNA	138	short	162	medium	1187372	pericentromeric	8014	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	15991519	15992798	AT1TE52715	.	-	ATIS112A	Harbinger	DNA	1279	short	173	medium	1187549	pericentromeric	8191	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	15993772	15993864	AT1TE52720	.	-	ATDNAI27T9A	MuDR	DNA	92	tiny	116	medium	1189802	pericentromeric	10444	no-RdDM	no-CHH	ExpressedAndAnnotated	15993970,15993952,15993977,15993977	15985594,15985681,15992905,15992917	-,-,-,-	transcript_id-"fe2796d5-4d88-4136-bca0-4ca038ffaf05|3",transcript_id-"737c622e-4f2f-400b-8cf7-f174df24beda|3",transcript_id-"bed7bdf7-c34d-4b59-91e7-b536bf9d0cf3|23",transcript_id-"d1375ed9-513c-404f-a7e9-edb71da1b15b|19"
Chr1	15994987	15995188	AT1TE52725	.	+	ATCOPIA28	Copia	LTR	201	short	81	medium	1191017	pericentromeric	11659	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	15995671	15995905	AT1TE52730	.	-	ATDNA2T9C	MuDR	DNA	234	short	242	high	1191701	pericentromeric	12343	DCL3-RdDM	no-RdDM	.	.	.	.	.
Chr1	15997136	16000277	AT1TE52735	.	-	VANDAL3	MuDR	DNA	3141	medium	177	medium	1193166	pericentromeric	13808	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	16000934	16003031	AT1TE52740	.	-	VANDAL3	MuDR	DNA	2097	medium	177	medium	1196964	pericentromeric	17606	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	16003505	16004974	AT1TE52745	.	-	ATDNA2T9C	MuDR	DNA	1469	short	242	high	1199535	pericentromeric	20177	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16004974	16005339	AT1TE52750	.	-	HELITRONY1B	Helitron	RC	365	short	414	high	1201004	pericentromeric	21646	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16005560	16005839	AT1TE52755	.	+	ATCOPIA28	Copia	LTR	279	short	81	medium	1201590	pericentromeric	22232	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	16006206	16006536	AT1TE52760	.	+	VANDAL5A	MuDR	DNA	330	short	56	medium	1202236	pericentromeric	22878	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	16007082	16008873	AT1TE52765	.	+	VANDAL4	MuDR	DNA	1791	short	102	medium	1203112	pericentromeric	23754	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	16008873	16009048	AT1TE52770	.	+	VANDAL4	MuDR	DNA	175	short	102	medium	1204903	pericentromeric	25545	no-RdDM	no-CHH	.	.	.	.	.
Chr1	16009303	16009976	AT1TE52775	.	-	VANDAL4	MuDR	DNA	673	short	102	medium	1205333	pericentromeric	25975	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	16009976	16011635	AT1TE52780	.	-	ATREP18	.	DNA	1659	short	391	high	1206006	pericentromeric	26648	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	16011635	16011673	AT1TE52785	.	-	ATREP18	.	DNA	38	tiny	391	high	1207665	pericentromeric	28307	no-RdDM	no-CHH	.	.	.	.	.
Chr1	16012032	16012415	AT1TE52790	.	-	VANDAL4	MuDR	DNA	383	short	102	medium	1208062	pericentromeric	28704	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	16012584	16019699	AT1TE52795	.	-	ATGP1	Gypsy	LTR	7115	long	144	medium	1208614	pericentromeric	21956	no-RdDM	no-RdDM	ExpressedAndAnnotated	16013506,16013506,16013506,16013506,16013506,16013506	16012622,16012641,16012646,16012649,16012658,16012659	-,-,-,-,-,-	transcript_id-"07eecba7-ce9a-4663-a10a-bd0c8e2662ca|13",transcript_id-"5da39d6b-60d6-4046-8dbd-c1bdb84cc126|12",transcript_id-"11f9cded-b0f8-43f4-ae1d-8d54d45cff96|11",transcript_id-"09e9bf27-2cc6-41db-9976-98f2e23107f8|55",transcript_id-"15c542a5-6055-4a1c-89cf-497e92f6e360|85",transcript_id-"f3faad98-b2d2-4429-be4f-4051c9f3e4a1|3"
Chr1	16020911	16020945	AT1TE52800	.	+	VANDAL4	MuDR	DNA	34	tiny	102	medium	1216941	pericentromeric	20710	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	16020945	16021150	AT1TE52805	.	-	VANDAL5	MuDR	DNA	205	short	85	medium	1216975	pericentromeric	20505	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	16023127	16024273	AT1TE52810	.	+	VANDAL4	MuDR	DNA	1146	short	102	medium	1219157	pericentromeric	17382	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	16025306	16025576	AT1TE52815	.	+	VANDAL4	MuDR	DNA	270	short	102	medium	1221336	pericentromeric	16079	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	16025576	16025599	AT1TE52820	.	-	VANDAL5	MuDR	DNA	23	tiny	85	medium	1221606	pericentromeric	16056	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	16028574	16029038	AT1TE52825	.	+	VANDAL4	MuDR	DNA	464	short	102	medium	1224604	pericentromeric	12617	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	16031000	16032234	AT1TE52830	.	+	VANDAL5	MuDR	DNA	1234	short	85	medium	1227030	pericentromeric	9421	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	16034405	16034719	AT1TE52835	.	+	ATHATN1	HAT	DNA	314	short	69	medium	1230435	pericentromeric	6936	no-CHH	RDR6-RdDM	.	.	.	.	.
Chr1	16034719	16034987	AT1TE52840	.	-	ATREP3	Helitron	RC	268	short	1439	high	1230749	pericentromeric	6668	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16034987	16037031	AT1TE52845	.	+	ATCOPIA28	Copia	LTR	2044	medium	81	medium	1231017	pericentromeric	4624	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	16037031	16037097	AT1TE52850	.	+	ATCOPIA28	Copia	LTR	66	tiny	81	medium	1233061	pericentromeric	4558	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	16038518	16038907	AT1TE52855	.	+	ATHILA4B_LTR	Gypsy	LTR	389	short	143	medium	1234548	pericentromeric	2748	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	16037154	16039031	+	transcript_id-"0d960b09-f95d-4192-beda-25601838ac27|3"
Chr1	16038907	16045334	AT1TE52860	.	+	ATIS112A	Harbinger	DNA	6427	long	173	medium	1234937	pericentromeric	0	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	16045334	16049209	AT1TE52865	.	+	ATHILA4	Gypsy	LTR	3875	medium	250	high	1241364	pericentromeric	2454	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	16049209	16051714	AT1TE52870	.	+	ATHILA4A	Gypsy	LTR	2505	medium	310	high	1245239	pericentromeric	80	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	16053085	16053714	AT1TE52875	.	-	ATGP8	Gypsy	LTR	629	short	92	medium	1249115	pericentromeric	1150	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	16054520	16055754	AT1TE52880	.	+	ATCOPIA29	Copia	LTR	1234	short	19	low	1250550	pericentromeric	2585	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	16055754	16058562	AT1TE52885	.	-	ATENSPM10	En-Spm	DNA	2808	medium	81	medium	1251784	pericentromeric	3819	no-RdDM	no-RdDM	ExpressedAndAnnotated	16058904	16056124	-	transcript_id-"2a0543e2-1ff4-4e19-9e22-67eb650b6ad5|8"
Chr1	16058835	16059164	AT1TE52890	.	-	ATENSPM11	En-Spm	DNA	329	short	47	low	1254865	pericentromeric	6900	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	16058904	16056124	-	transcript_id-"2a0543e2-1ff4-4e19-9e22-67eb650b6ad5|8"
Chr1	16059164	16061322	AT1TE52895	.	+	ATCOPIA28	Copia	LTR	2158	medium	81	medium	1255194	pericentromeric	7229	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	16062269	16064336	AT1TE52900	.	-	ATIS112A	Harbinger	DNA	2067	medium	173	medium	1258299	pericentromeric	10334	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	16067594	16068439	AT1TE52910	.	-	ATREP11	Helitron	RC	845	short	841	high	1263624	pericentromeric	9152	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	16069117	16069347	AT1TE52915	.	+	ATREP6	Helitron	RC	230	short	181	medium	1265147	pericentromeric	8244	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	16069347	16070136	AT1TE52920	.	+	ATREP13	Helitron	RC	789	short	106	medium	1265377	pericentromeric	7455	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16070136	16074320	AT1TE52925	.	+	ATHAT3	HAT	DNA	4184	medium	23	low	1266166	pericentromeric	3271	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	16070350,16070350,16070350	16071715,16074004,16074042	+,+,+	transcript_id-"d7e9f068-eae0-442e-b766-b45c6bc3831d|4",transcript_id-"46be7983-cd51-47d0-8233-8ed7a2868078|5",transcript_id-"c7c1ce3f-0481-41b2-ae5b-995450beca39|205"
Chr1	16074320	16074531	AT1TE52930	.	+	ATREP13	Helitron	RC	211	short	106	medium	1270350	pericentromeric	3060	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	16077338	16077422	AT1TE52935	.	+	ATREP6	Helitron	RC	84	tiny	181	medium	1273368	pericentromeric	169	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16078726	16079631	AT1TE52940	.	-	ATHILA4	Gypsy	LTR	905	short	250	high	1274756	pericentromeric	159	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	16079631	16080531	AT1TE52945	.	+	ATHILA4	Gypsy	LTR	900	short	250	high	1275661	pericentromeric	1064	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16080533	16089067	AT1TE52950	.	+	ATENSPM6	En-Spm	DNA	8534	long	151	medium	1276563	pericentromeric	1966	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	16085494,16086968	16088394,16088395	+,+	transcript_id-"88c17a93-9bb4-4d7c-b28b-afdb41747a94|3",transcript_id-"53526814-c1c8-45fc-9473-eabb9cb53a60|7"
Chr1	16089067	16089097	AT1TE52955	.	+	ATENSPM6	En-Spm	DNA	30	tiny	151	medium	1285097	pericentromeric	10500	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	16089101	16089995	AT1TE52960	.	+	ATHILA8A	Gypsy	LTR	894	short	97	medium	1285131	pericentromeric	10534	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	16089995	16090523	AT1TE52965	.	+	ATHILA4	Gypsy	LTR	528	short	250	high	1286025	pericentromeric	11428	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	16090523	16093188	AT1TE52970	.	-	ATHILA4A	Gypsy	LTR	2665	medium	310	high	1286553	pericentromeric	11956	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16093188	16093881	AT1TE52975	.	-	ATHILA4C	Gypsy	LTR	693	short	206	high	1289218	pericentromeric	14621	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	16093986	16094141	AT1TE52980	.	-	ATHILA4	Gypsy	LTR	155	short	250	high	1290016	pericentromeric	15419	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	16094141	16097900	AT1TE52985	.	-	ATHILA0_I	Gypsy	LTR	3759	medium	138	medium	1290171	pericentromeric	15574	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	16095807,16097126	16095048,16095048	-,-	transcript_id-"bdcdc03b-4c64-4bb5-ac4f-bd6aeb84be5c|3",transcript_id-"8d0ff67e-dd83-4899-ad51-b94cc3ff7dcc|26"
Chr1	16097900	16099192	AT1TE52990	.	-	ATHILA5	Gypsy	LTR	1292	short	131	medium	1293930	pericentromeric	19333	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	16099420	16099668	AT1TE52995	.	-	ATHILA0_I	Gypsy	LTR	248	short	138	medium	1295450	pericentromeric	20853	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	16099668	16104812	AT1TE53000	.	-	ATHILA3	Gypsy	LTR	5144	long	243	high	1295698	pericentromeric	21050	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	16101305	16101358	AT1TE53005	.	-	ATHILA3	Gypsy	LTR	53	tiny	243	high	1297335	pericentromeric	22738	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	16104812	16104842	AT1TE53015	.	-	ATHILA4	Gypsy	LTR	30	tiny	250	high	1300842	pericentromeric	21020	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	16104842	16105379	AT1TE53020	.	-	ATHILA4	Gypsy	LTR	537	short	250	high	1300872	pericentromeric	20483	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr1	16105379	16106224	AT1TE53025	.	-	ATHILA4A	Gypsy	LTR	845	short	310	high	1301409	pericentromeric	19638	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	16106230	16109971	AT1TE53030	.	-	ATHAT3	HAT	DNA	3741	medium	23	low	1302260	pericentromeric	15891	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	16109971	16110287	AT1TE53035	.	-	ATHILA4D_LTR	Gypsy	LTR	316	short	106	medium	1306001	pericentromeric	15575	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16110288	16110310	AT1TE53040	.	-	ATHILA4A	Gypsy	LTR	23	tiny	310	high	1306317	pericentromeric	15552	.	.	.	.	.	.	.
Chr1	16110310	16110655	AT1TE53045	.	+	ATHILA4	Gypsy	LTR	345	short	250	high	1306340	pericentromeric	15207	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	16110655	16112323	AT1TE53050	.	+	ATHILA8A	Gypsy	LTR	1668	short	97	medium	1306685	pericentromeric	13539	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	16111318,16111320,16111320,16111320	16111478,16114243,16114245,16114246	+,+,+,+	transcript_id-"93b7458d-d829-48d1-bcdb-461ed16464f9|32",transcript_id-"4b0c8f8e-0809-4288-8eb8-d2293b5ce81b|19",transcript_id-"e9278b5b-0d53-409c-8221-d789c7feac64|3",transcript_id-"eece09ff-39c0-4c8e-8f40-5737bab825a2|7"
Chr1	16112323	16112355	AT1TE53055	.	+	ATHILA8A	Gypsy	LTR	32	tiny	97	medium	1308353	pericentromeric	13507	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	16112355	16113422	AT1TE53060	.	+	ATHILA4	Gypsy	LTR	1067	short	250	high	1308385	pericentromeric	12440	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	16111320,16111320	16114243,16114246	+,+	transcript_id-"4b0c8f8e-0809-4288-8eb8-d2293b5ce81b|19",transcript_id-"eece09ff-39c0-4c8e-8f40-5737bab825a2|7"
Chr1	16113422	16114784	AT1TE53065	.	+	ATHILA4A	Gypsy	LTR	1362	short	310	high	1309452	pericentromeric	11078	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	16111320,16111320,16111320	16114243,16114245,16114246	+,+,+	transcript_id-"4b0c8f8e-0809-4288-8eb8-d2293b5ce81b|19",transcript_id-"e9278b5b-0d53-409c-8221-d789c7feac64|3",transcript_id-"eece09ff-39c0-4c8e-8f40-5737bab825a2|7"
Chr1	16115817	16115943	AT1TE53070	.	-	ATCOPIA87	Copia	LTR	126	short	19	low	1311847	pericentromeric	9919	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	16116405	16116468	AT1TE53075	.	+	BRODYAGA1	MuDR	DNA	63	tiny	251	high	1312435	pericentromeric	9394	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16116468	16116752	AT1TE53080	.	+	ATMU10	MuDR	DNA	284	short	87	medium	1312498	pericentromeric	9110	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16116886	16117223	AT1TE53085	.	-	BRODYAGA1	MuDR	DNA	337	short	251	high	1312916	pericentromeric	8639	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16117828	16122859	AT1TE53090	.	+	ENDOVIR1	Copia	LTR	5031	long	15	low	1313858	pericentromeric	3003	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	16122658,16122660	16124045,16123357	+,+	transcript_id-"628fa0ff-bcc0-45f3-90aa-308758b80564|72",transcript_id-"ea19e437-93ae-4403-9cc5-0a604ea0addb|6"
Chr1	16122859	16124077	AT1TE53095	.	+	ATCOPIA58	Copia	LTR	1218	short	18	low	1318889	pericentromeric	1785	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	16122658,16122660	16124045,16123357	+,+	transcript_id-"628fa0ff-bcc0-45f3-90aa-308758b80564|72",transcript_id-"ea19e437-93ae-4403-9cc5-0a604ea0addb|6"
Chr1	16124619	16124702	AT1TE53100	.	-	SIMPLEHAT2	HAT	DNA	83	tiny	73	medium	1320649	pericentromeric	1160	PolIV-and-RDR6-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	16124702	16125144	AT1TE53105	.	-	SIMPLEHAT2	HAT	DNA	442	short	73	medium	1320732	pericentromeric	718	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	16130503	16130986	AT1TE53115	.	-	BRODYAGA1A	MuDR	DNA	483	short	586	high	1326533	pericentromeric	919	no-CHH	no-CHH	.	.	.	.	.
Chr1	16135676	16135737	AT1TE53125	.	+	ATLINE1A	L1	LINE	61	tiny	289	high	1331706	pericentromeric	220	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16138077	16138097	AT1TE53130	.	+	BRODYAGA1A	MuDR	DNA	20	tiny	586	high	1334107	pericentromeric	618	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16138097	16139257	AT1TE53135	.	-	HELITRONY3	Helitron	RC	1160	short	1399	high	1334127	pericentromeric	638	no-CHH	no-CHH	.	.	.	.	.
Chr1	16138233	16138786	AT1TE53140	.	+	ATREP13	Helitron	RC	553	short	106	medium	1334263	pericentromeric	774	no-CHH	no-CHH	.	.	.	.	.
Chr1	16139262	16139486	AT1TE53145	.	-	ATREP10D	Helitron	RC	224	short	1295	high	1335292	pericentromeric	1329	no-CHH	no-CHH	.	.	.	.	.
Chr1	16139486	16140471	AT1TE53150	.	+	ATREP4	Helitron	RC	985	short	832	high	1335516	pericentromeric	344	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	16140471	16140512	AT1TE53155	.	-	HELITRONY3	Helitron	RC	41	tiny	1399	high	1336501	pericentromeric	303	no-CHH	no-CHH	.	.	.	.	.
Chr1	16142530	16142707	AT1TE53160	.	+	ATREP10C	Helitron	RC	178	short	123	medium	1338559	pericentromeric	874	.	.	.	.	.	.	.
Chr1	16143284	16143370	AT1TE53165	.	+	HELITRONY1D	Helitron	RC	86	tiny	756	high	1339314	pericentromeric	1629	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16143370	16145661	AT1TE53170	.	-	ATREP10D	Helitron	RC	2291	medium	1295	high	1339400	pericentromeric	1715	no-RdDM	no-CHH	.	.	.	.	.
Chr1	16145661	16145701	AT1TE53175	.	+	ATREP11	Helitron	RC	40	tiny	841	high	1341691	pericentromeric	4006	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16146123	16146419	AT1TE53180	.	+	ATSINE4	.	SINE	296	short	98	medium	1342153	pericentromeric	4468	DCL3-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	16146853	16147149	AT1TE53185	.	+	ATSINE4	.	SINE	296	short	98	medium	1342883	pericentromeric	3945	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	16147583	16147693	AT1TE53190	.	+	ATSINE4	.	SINE	110	short	98	medium	1343613	pericentromeric	3401	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	16147917	16148400	AT1TE53195	.	-	ATDNA12T3_2	.	DNA	483	short	660	high	1343947	pericentromeric	2694	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16148442	16148532	AT1TE53200	.	-	ATREP15	Helitron	RC	90	tiny	1003	high	1344472	pericentromeric	2562	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	16148532	16148733	AT1TE53205	.	-	BRODYAGA2	MuDR	DNA	201	short	525	high	1344562	pericentromeric	2361	no-CHH	no-CHH	.	.	.	.	.
Chr1	16148733	16148809	AT1TE53210	.	+	TNAT1A	.	DNA	76	tiny	162	medium	1344763	pericentromeric	2285	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	16148809	16149828	AT1TE53215	.	-	HELITRONY1B	Helitron	RC	1019	short	414	high	1344839	pericentromeric	1266	no-CHH	no-CHH	.	.	.	.	.
Chr1	16156711	16156864	AT1TE53230	.	+	RathE1_cons	.	RathE1_cons	153	short	213	high	1352741	pericentromeric	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16156864	16156897	AT1TE53235	.	+	RathE1_cons	.	RathE1_cons	33	tiny	213	high	1352894	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	16158005	16158038	AT1TE53240	.	+	HELITRONY2	Helitron	RC	33	tiny	198	medium	1354035	pericentromeric	232	no-CHH	no-CHH	.	.	.	.	.
Chr1	16158038	16158304	AT1TE53245	.	-	ATREP11	Helitron	RC	266	short	841	high	1354068	pericentromeric	265	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16158304	16161451	AT1TE53250	.	-	ATREP4	Helitron	RC	3147	medium	832	high	1354334	pericentromeric	531	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16161451	16161553	AT1TE53255	.	-	ATREP4	Helitron	RC	102	short	832	high	1357481	pericentromeric	3678	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	16161553	16162042	AT1TE53260	.	+	ATREP5	Helitron	RC	489	short	624	high	1357583	pericentromeric	3780	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16162424	16164556	AT1TE53265	.	+	ATREP4	Helitron	RC	2132	medium	832	high	1358454	pericentromeric	4651	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16164556	16164704	AT1TE53270	.	+	HELITRONY3	Helitron	RC	148	short	1399	high	1360586	pericentromeric	6783	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	16164704	16165296	AT1TE53275	.	-	HELITRONY3	Helitron	RC	592	short	1399	high	1360734	pericentromeric	6931	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	16164856	16165118	AT1TE53280	.	-	DT1	Mariner	DNA	262	short	123	medium	1360886	pericentromeric	7083	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	16167802	16167957	AT1TE53285	.	+	ATGP8	Gypsy	LTR	155	short	92	medium	1363832	pericentromeric	10029	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16168080	16168118	AT1TE53290	.	-	META1	Copia	LTR	38	tiny	138	medium	1364110	pericentromeric	10307	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr1	16168118	16168193	AT1TE53295	.	-	ATCOPIA28	Copia	LTR	75	tiny	81	medium	1364148	pericentromeric	10345	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16168193	16170418	AT1TE53300	.	-	ATCOPIA29	Copia	LTR	2225	medium	19	low	1364223	pericentromeric	10420	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	16170418	16171419	AT1TE53305	.	+	ATREP15	Helitron	RC	1001	short	1003	high	1366448	pericentromeric	12645	no-RdDM	no-CHH	.	.	.	.	.
Chr1	16171439	16172202	AT1TE53310	.	-	ATREP17	MuDR	DNA	763	short	34	low	1367469	pericentromeric	12006	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	16174270	16174793	AT1TE53315	.	+	ATLANTYS1	Gypsy	LTR	523	short	153	medium	1370300	pericentromeric	9415	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16176731	16177990	AT1TE53320	.	+	ATCOPIA35	Copia	LTR	1259	short	22	low	1372761	pericentromeric	6218	no-RdDM	no-CHH	.	.	.	.	.
Chr1	16177990	16178223	AT1TE53325	.	+	ATCOPIA31A	Copia	LTR	233	short	5	low	1374020	pericentromeric	5985	no-RdDM	no-CHH	.	.	.	.	.
Chr1	16178488	16181520	AT1TE53330	.	+	ATCOPIA64	Copia	LTR	3032	medium	13	low	1374518	pericentromeric	2688	no-RdDM	no-CHH	.	.	.	.	.
Chr1	16181520	16181650	AT1TE53335	.	+	ATCOPIA45	Copia	LTR	130	short	20	low	1377550	pericentromeric	2558	no-CHH	no-CHH	.	.	.	.	.
Chr1	16181650	16181683	AT1TE53340	.	+	ATCOPIA45	Copia	LTR	33	tiny	20	low	1377680	pericentromeric	2525	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16181683	16181716	AT1TE53345	.	+	ATCOPIA54	Copia	LTR	33	tiny	18	low	1377713	pericentromeric	2492	no-RdDM	no-CHH	.	.	.	.	.
Chr1	16182567	16185822	AT1TE53350	.	+	HELITRONY1B	Helitron	RC	3255	medium	414	high	1378597	pericentromeric	0	no-RdDM	no-CHH	.	.	.	.	.
Chr1	16182985	16183109	AT1TE53355	.	-	HELITRONY1D	Helitron	RC	124	short	756	high	1379015	pericentromeric	1099	no-RdDM	no-CHH	.	.	.	.	.
Chr1	16188918	16188965	AT1TE53365	.	+	ATHILA5	Gypsy	LTR	47	tiny	131	medium	1384948	pericentromeric	4395	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	16188965	16191015	AT1TE53370	.	+	ATHILA5	Gypsy	LTR	2050	medium	131	medium	1384995	pericentromeric	4442	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	16189021,16189134	16189608,16189650	+,+	transcript_id-"d3ff41ac-429a-420e-98c5-22858c7e52f1|10",transcript_id-"fd6b5423-1a22-4a6a-8f94-fc7dc77021ab|12"
Chr1	16191015	16193353	AT1TE53375	.	+	ATGP6	Gypsy	LTR	2338	medium	25	low	1387045	pericentromeric	6492	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	16193921	16194406	AT1TE53380	.	+	ATHILA4D_LTR	Gypsy	LTR	485	short	106	medium	1389951	pericentromeric	9398	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	16194406	16194665	AT1TE53385	.	+	ATCOPIA94	Copia	LTR	259	short	39	low	1390436	pericentromeric	9883	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	16194665	16198716	AT1TE53390	.	+	ATGP6	Gypsy	LTR	4051	medium	25	low	1390695	pericentromeric	10142	no-RdDM	no-RdDM	ExpressedAndAnnotated	16197838	16198424	+	transcript_id-"da77be0b-231d-41a1-a281-7713c9bfd2ce|4"
Chr1	16198716	16203798	AT1TE53395	.	+	ATHILA5	Gypsy	LTR	5082	long	131	medium	1394746	pericentromeric	10196	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	16203668	16204027	+	transcript_id-"a2f6b644-2282-4b31-b8f8-6d2c187a219c|7"
Chr1	16209059	16209861	AT1TE53405	.	+	ATLANTYS1	Gypsy	LTR	802	short	153	medium	1405089	pericentromeric	4133	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	16211421	16211533	AT1TE53410	.	+	ATHILA2	Gypsy	LTR	112	short	413	high	1407451	pericentromeric	2461	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	16211533	16213841	AT1TE53415	.	+	ATHILA5	Gypsy	LTR	2308	medium	131	medium	1407563	pericentromeric	153	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	16216804	16217163	AT1TE53420	.	-	ATREP4	Helitron	RC	359	short	832	high	1412834	pericentromeric	33	no-RdDM	no-CHH	.	.	.	.	.
Chr1	16220126	16220485	AT1TE53425	.	-	ATREP4	Helitron	RC	359	short	832	high	1416156	pericentromeric	33	no-CHH	no-CHH	.	.	.	.	.
Chr1	16223448	16223955	AT1TE53430	.	-	BRODYAGA2	MuDR	DNA	507	short	525	high	1419478	pericentromeric	975	no-CHH	no-CHH	.	.	.	.	.
Chr1	16225360	16225685	AT1TE53435	.	+	BRODYAGA1A	MuDR	DNA	325	short	586	high	1421390	pericentromeric	2887	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	16231805	16232128	AT1TE53450	.	+	TSCL	.	LINE?	323	short	81	medium	1427835	pericentromeric	647	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16236756	16236800	AT1TE53460	.	-	BRODYAGA1A	MuDR	DNA	44	tiny	586	high	1432786	pericentromeric	647	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr1	16236800	16237549	AT1TE53465	.	-	ATREP15	Helitron	RC	749	short	1003	high	1432830	pericentromeric	691	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16240476	16244557	AT1TE53470	.	+	Unassigned	.	Unassigned	4081	medium	.	low	1436506	pericentromeric	461	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	16246204	16246418	AT1TE53475	.	+	ATLINE1A	L1	LINE	214	short	289	high	1442234	pericentromeric	6189	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16246633	16247183	AT1TE53480	.	+	ATREP10A	Helitron	RC	550	short	279	high	1442663	pericentromeric	6618	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16247188	16247528	AT1TE53485	.	-	HELITRONY3	Helitron	RC	340	short	1399	high	1443218	pericentromeric	7173	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	16247528	16247707	AT1TE53490	.	+	HELITRONY3	Helitron	RC	179	short	1399	high	1443558	pericentromeric	7513	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16248689	16249108	AT1TE53495	.	-	ATHATN4	HAT	DNA	419	short	56	medium	1444719	pericentromeric	8674	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16249784	16250104	AT1TE53500	.	-	ATLINE2	L1	LINE	320	short	138	medium	1445814	pericentromeric	9769	no-RdDM	no-CHH	.	.	.	.	.
Chr1	16252640	16252754	AT1TE53505	.	+	HELITRONY3	Helitron	RC	114	short	1399	high	1448670	pericentromeric	11234	RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16252754	16254035	AT1TE53510	.	+	SIMPLEHAT2	HAT	DNA	1281	short	73	medium	1448784	pericentromeric	9953	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16254036	16254062	AT1TE53515	.	+	HELITRONY3	Helitron	RC	26	tiny	1399	high	1450066	pericentromeric	9926	no-CHH	no-RdDM	.	.	.	.	.
Chr1	16254062	16254486	AT1TE53520	.	+	ATIS112A	Harbinger	DNA	424	short	173	medium	1450092	pericentromeric	9502	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16255181	16256004	AT1TE53525	.	-	ATREP3	Helitron	RC	823	short	1439	high	1451211	pericentromeric	7984	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16256749	16257997	AT1TE53530	.	-	ATREP3	Helitron	RC	1248	short	1439	high	1452779	pericentromeric	5991	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16257997	16258425	AT1TE53535	.	-	HELITRONY1E	Helitron	RC	428	short	447	high	1454027	pericentromeric	5563	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr1	16258425	16259815	AT1TE53540	.	-	HELITRONY3	Helitron	RC	1390	short	1399	high	1454455	pericentromeric	4173	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16259818	16260357	AT1TE53545	.	+	ATREP5	Helitron	RC	539	short	624	high	1455848	pericentromeric	3631	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16260357	16260627	AT1TE53550	.	+	BOMZH2	MuDR	DNA	270	short	47	low	1456387	pericentromeric	3361	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16260839	16261097	AT1TE53555	.	-	BRODYAGA1A	MuDR	DNA	258	short	586	high	1456869	pericentromeric	2891	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16261097	16262552	AT1TE53560	.	+	ATREP5	Helitron	RC	1455	short	624	high	1457127	pericentromeric	1436	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16262552	16262928	AT1TE53565	.	+	HELITRONY1D	Helitron	RC	376	short	756	high	1458582	pericentromeric	1060	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16264843	16264968	AT1TE53570	.	+	ATREP10B	Helitron	RC	126	short	491	high	1460872	pericentromeric	179	.	.	.	.	.	.	.
Chr1	16265820	16265980	AT1TE53575	.	-	ATHILA8A	Gypsy	LTR	160	short	97	medium	1461850	pericentromeric	1011	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	16274653	16275219	AT1TE53600	.	-	BRODYAGA1	MuDR	DNA	566	short	251	high	1470683	pericentromeric	212	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	16278645	16278736	AT1TE53610	.	-	ATREP11A	Helitron	RC	91	tiny	95	medium	1474675	pericentromeric	460	no-CHH	no-CHH	.	.	.	.	.
Chr1	16278736	16279379	AT1TE53615	.	+	HELITRONY1B	Helitron	RC	643	short	414	high	1474766	pericentromeric	551	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16279382	16279742	AT1TE53620	.	+	ATCOPIA93	Copia	LTR	360	short	10	low	1475412	pericentromeric	1197	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	16279742	16280141	AT1TE53625	.	-	ATLANTYS1	Gypsy	LTR	399	short	153	medium	1475772	pericentromeric	1557	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	16280609	16281279	AT1TE53630	.	+	HELITRONY3	Helitron	RC	670	short	1399	high	1476639	pericentromeric	2424	no-CHH	no-CHH	.	.	.	.	.
Chr1	16281486	16291044	AT1TE53635	.	-	VANDAL8	MuDR	DNA	9558	long	123	medium	1477516	pericentromeric	3301	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	16286734,16286733,16286205,16286707	16285737,16285755,16285820,16285837	-,-,-,-	transcript_id-"1a900d36-a58f-41e8-9c17-ca8739edfeb0|6",transcript_id-"a80bcaba-74b0-447b-8b0a-068ef526556b|5",transcript_id-"80e9596e-3053-476e-9c50-30086ca70056|11",transcript_id-"6f48a16a-dc08-41aa-9150-a67e74e2a49d|3"
Chr1	16291575	16291737	AT1TE53640	.	+	ATREP18	.	DNA	163	short	391	high	1487604	pericentromeric	13389	.	.	.	.	.	.	.
Chr1	16291842	16292255	AT1TE53645	.	+	ATREP18	.	DNA	413	short	391	high	1487872	pericentromeric	13657	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16292255	16294190	AT1TE53650	.	+	ATREP18	.	DNA	1935	short	391	high	1488285	pericentromeric	14070	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16294195	16294480	AT1TE53655	.	-	HELITRONY1A	Helitron	RC	286	short	271	high	1490224	pericentromeric	14501	.	.	.	.	.	.	.
Chr1	16296280	16302985	AT1TE53660	.	-	VANDAL8	MuDR	DNA	6705	long	123	medium	1492310	pericentromeric	5996	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	16295026,16296237,16298671,16298698	16297572,16297527,16297724,16297813	+,+,-,-	transcript_id-"a03c7dd7-6714-4f5d-bf81-f687aa45161e|7",transcript_id-"fe2d599a-3760-487f-98c2-b0d64c66d2e4|6",transcript_id-"b7e645b8-c165-43ae-b03a-685bb2aa3a03|3",transcript_id-"1ecf077f-ea7c-4d85-8b3f-694a70a03dfd|4"
Chr1	16303515	16305190	AT1TE53665	.	+	ATREP18	.	DNA	1675	short	391	high	1499545	pericentromeric	3791	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16305191	16305250	AT1TE53670	.	+	ATREP18	.	DNA	60	tiny	391	high	1501220	pericentromeric	3731	.	.	.	.	.	.	.
Chr1	16305251	16305480	AT1TE53675	.	-	HELITRONY1A	Helitron	RC	230	short	271	high	1501280	pericentromeric	3501	.	.	.	.	.	.	.
Chr1	16306749	16306850	AT1TE53680	.	-	ATREP10D	Helitron	RC	101	short	1295	high	1502779	pericentromeric	2131	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	16306850	16307342	AT1TE53685	.	+	ATREP6	Helitron	RC	492	short	181	medium	1502880	pericentromeric	1639	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	16307342	16307594	AT1TE53690	.	+	ATTIRTA1	Tc1	DNA	252	short	95	medium	1503372	pericentromeric	1387	no-CHH	no-CHH	.	.	.	.	.
Chr1	16307595	16307723	AT1TE53695	.	-	HELITRONY3	Helitron	RC	129	short	1399	high	1503624	pericentromeric	1258	.	.	.	.	.	.	.
Chr1	16307723	16307795	AT1TE53700	.	-	ATREP10D	Helitron	RC	72	tiny	1295	high	1503753	pericentromeric	1186	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16311523	16316838	AT1TE53710	.	+	Unassigned	.	Unassigned	5315	long	.	low	1507553	pericentromeric	640	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	16317248	16317381	AT1TE53715	.	+	BRODYAGA2	MuDR	DNA	133	short	525	high	1513278	pericentromeric	6365	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16317381	16317875	AT1TE53720	.	+	ATREP10B	Helitron	RC	494	short	491	high	1513411	pericentromeric	6498	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16318841	16319152	AT1TE53725	.	+	TAG1	HAT	DNA	311	short	28	low	1514871	pericentromeric	7958	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	16319028	16319194	+	transcript_id-"3d9d875a-ca7c-4606-8cc6-a3649efacfca|3"
Chr1	16319998	16320280	AT1TE53730	.	+	ATLINE1_6	L1	LINE	282	short	129	medium	1516028	pericentromeric	9115	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	16321606	16324358	AT1TE53735	.	+	ATLINE1_4	L1	LINE	2752	medium	102	medium	1517636	pericentromeric	10723	no-RdDM	no-RdDM	ExpressedAndAnnotated	16321556	16321844	+	transcript_id-"cb34158e-1f0b-40d4-ab60-6b0fae278fcb|3"
Chr1	16324358	16324403	AT1TE53740	.	+	ATLINE1A	L1	LINE	45	tiny	289	high	1520388	pericentromeric	13475	no-RdDM	no-CHH	.	.	.	.	.
Chr1	16325030	16325183	AT1TE53745	.	-	ATREP4	Helitron	RC	153	short	832	high	1521060	pericentromeric	14147	no-RdDM	no-CHH	.	.	.	.	.
Chr1	16325183	16327367	AT1TE53750	.	-	ATREP3	Helitron	RC	2184	medium	1439	high	1521213	pericentromeric	14300	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16327367	16327474	AT1TE53755	.	-	BRODYAGA1A	MuDR	DNA	107	short	586	high	1523397	pericentromeric	16484	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16329001	16329246	AT1TE53760	.	-	ATREP10D	Helitron	RC	245	short	1295	high	1525031	pericentromeric	16727	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16329246	16339556	AT1TE53765	.	+	VANDAL22	MuDR	DNA	10310	long	48	low	1525276	pericentromeric	6417	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	16334473,16335749	16333670,16335544	-,-	transcript_id-"6cd3f11b-0ec5-4086-a724-e9f2ae4f5a78|5",transcript_id-"fce532b3-59bd-4019-8f8f-b3068cf95dc9|5"
Chr1	16339556	16339904	AT1TE53770	.	-	ATREP10D	Helitron	RC	348	short	1295	high	1535586	pericentromeric	6069	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16339904	16340119	AT1TE53775	.	+	ATMU2	MuDR	DNA	215	short	64	medium	1535934	pericentromeric	5854	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16340646	16340675	AT1TE53780	.	+	ATREP10D	Helitron	RC	30	tiny	1295	high	1536675	pericentromeric	5298	.	.	LowExpressed	.	.	.	.
Chr1	16340675	16340750	AT1TE53785	.	-	ATREP10D	Helitron	RC	75	tiny	1295	high	1536705	pericentromeric	5223	no-RdDM	no-CHH	.	.	.	.	.
Chr1	16340750	16341752	AT1TE53790	.	-	ATREP10D	Helitron	RC	1002	short	1295	high	1536780	pericentromeric	4221	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16341752	16341826	AT1TE53795	.	+	ATMU2	MuDR	DNA	74	tiny	64	medium	1537782	pericentromeric	4147	DCL3-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16341826	16341880	AT1TE53800	.	+	ATREP3	Helitron	RC	54	tiny	1439	high	1537856	pericentromeric	4093	RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16342373	16342454	AT1TE53805	.	-	ATREP10B	Helitron	RC	82	tiny	491	high	1538402	pericentromeric	3519	.	.	.	.	.	.	.
Chr1	16342454	16342553	AT1TE53810	.	-	ATMU1	MuDR	DNA	99	tiny	59	medium	1538484	pericentromeric	3420	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16342553	16347999	AT1TE53815	.	-	ATREP10D	Helitron	RC	5446	long	1295	high	1538583	pericentromeric	0	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	16343030	16343289	AT1TE53820	.	-	ATREP10A	Helitron	RC	259	short	279	high	1539060	pericentromeric	2684	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16343289	16346824	AT1TE53825	.	+	ATDNA1T9A	MuDR	DNA	3535	medium	36	low	1539319	pericentromeric	0	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	16347999	16348019	AT1TE53830	.	-	ATREP15	Helitron	RC	20	tiny	1003	high	1544029	pericentromeric	1524	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	16348019	16348075	AT1TE53835	.	-	ENDOVIR1	Copia	LTR	56	tiny	15	low	1544049	pericentromeric	1544	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	16348075	16348538	AT1TE53840	.	-	ATCOPIA58	Copia	LTR	463	short	18	low	1544105	pericentromeric	1600	no-RdDM	no-CHH	.	.	.	.	.
Chr1	16348538	16348559	AT1TE53845	.	-	ENDOVIR1	Copia	LTR	21	tiny	15	low	1544568	pericentromeric	2063	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	16348626	16348770	AT1TE53850	.	-	TNAT1A	.	DNA	144	short	162	medium	1544656	pericentromeric	2151	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16348770	16348820	AT1TE53855	.	-	DT1	Mariner	DNA	50	tiny	123	medium	1544800	pericentromeric	2295	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	16348820	16350377	AT1TE53860	.	-	ATIS112A	Harbinger	DNA	1557	short	173	medium	1544850	pericentromeric	2345	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16350378	16350417	AT1TE53865	.	+	ATIS112A	Harbinger	DNA	39	tiny	173	medium	1546408	pericentromeric	3903	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	16350417	16351085	AT1TE53870	.	+	ATIS112A	Harbinger	DNA	668	short	173	medium	1546447	pericentromeric	3942	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16351231	16351330	AT1TE53875	.	+	ATREP5	Helitron	RC	99	tiny	624	high	1547261	pericentromeric	4756	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16351340	16351942	AT1TE53880	.	-	SIMPLEGUY1	Harbinger	DNA	602	short	116	medium	1547370	pericentromeric	4819	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16351945	16352111	AT1TE53885	.	+	TAG2	HAT	DNA	166	short	86	medium	1547975	pericentromeric	4650	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16352972	16353121	AT1TE53890	.	+	ATHATN1	HAT	DNA	149	short	69	medium	1549002	pericentromeric	3640	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16353421	16354538	AT1TE53895	.	+	ATIS112A	Harbinger	DNA	1117	short	173	medium	1549451	pericentromeric	2223	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16354538	16355020	AT1TE53900	.	-	HELITRONY1B	Helitron	RC	482	short	414	high	1550568	pericentromeric	1741	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16355020	16355044	AT1TE53905	.	-	ATREP5	Helitron	RC	24	tiny	624	high	1551050	pericentromeric	1717	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16360020	16361175	AT1TE53915	.	-	ATGP1	Gypsy	LTR	1155	short	144	medium	1556050	pericentromeric	0	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	16361175	16361214	AT1TE53920	.	+	ARNOLDY1	MuDR	DNA	39	tiny	237	high	1557205	pericentromeric	1152	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16361220	16363108	AT1TE53925	.	+	ARNOLDY2	MuDR	DNA	1888	short	288	high	1557250	pericentromeric	1197	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16363115	16364036	AT1TE53930	.	-	ATREP11	Helitron	RC	921	short	841	high	1559145	pericentromeric	3092	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16364036	16364385	AT1TE53935	.	+	ATREP4	Helitron	RC	349	short	832	high	1560066	pericentromeric	4013	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16364385	16364607	AT1TE53940	.	+	HELITRONY3	Helitron	RC	222	short	1399	high	1560415	pericentromeric	4362	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16364727	16365032	AT1TE53945	.	-	ATENSPM10	En-Spm	DNA	305	short	81	medium	1560757	pericentromeric	4704	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16368184	16368540	AT1TE53955	.	+	ATLANTYS2	Gypsy	LTR	356	short	179	medium	1564214	pericentromeric	8161	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	16368540	16369914	AT1TE53960	.	+	ATLANTYS2	Gypsy	LTR	1374	short	179	medium	1564570	pericentromeric	8517	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	16370211	16369433	-	transcript_id-"c51b6e1e-cbff-4935-a410-7700d1653e93|7"
Chr1	16369955	16369967	AT1TE53965	.	-	ATCOPIA69	Copia	LTR	12	tiny	25	low	1565985	pericentromeric	9006	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	16369970	16375017	AT1TE53970	.	-	ATCOPIA69	Copia	LTR	5047	long	25	low	1566000	pericentromeric	3956	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	16375017	16379642	AT1TE53975	.	+	ATLANTYS2	Gypsy	LTR	4625	medium	179	medium	1571047	pericentromeric	0	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	16379121	16378498	-	transcript_id-"437a62ee-7789-46c2-bca7-f58dae496aed|3"
Chr1	16377715	16377752	AT1TE53980	.	+	ATLANTYS2	Gypsy	LTR	37	tiny	179	medium	1573745	pericentromeric	1221	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	16377779	16378958	AT1TE53985	.	-	ATHILA4B_LTR	Gypsy	LTR	1179	short	143	medium	1573809	pericentromeric	15	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	16379121	16378498	-	transcript_id-"437a62ee-7789-46c2-bca7-f58dae496aed|3"
Chr1	16380043	16380110	AT1TE53990	.	-	ATGP1	Gypsy	LTR	67	tiny	144	medium	1576073	pericentromeric	638	RDR6-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	16380110	16387683	AT1TE53995	.	-	ATGP1	Gypsy	LTR	7573	long	144	medium	1576140	pericentromeric	705	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	16389849	16392463	AT1TE54000	.	+	ATGP3	Gypsy	LTR	2614	medium	60	medium	1585879	pericentromeric	5895	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	16392787	16397819	AT1TE54005	.	-	ATDNA12T3A	.	DNA	5032	long	22	low	1588817	pericentromeric	539	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	16393997	16394353	AT1TE54010	.	+	ATHILA4A	Gypsy	LTR	356	short	310	high	1590027	pericentromeric	4005	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	16396139	16396969	AT1TE54015	.	+	ATHILA4A	Gypsy	LTR	830	short	310	high	1592169	pericentromeric	1389	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	16399978	16401001	AT1TE54020	.	-	ATREP2	Helitron	RC	1023	short	164	medium	1596008	pericentromeric	150	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16401001	16401057	AT1TE54025	.	+	VANDAL8	MuDR	DNA	56	tiny	123	medium	1597031	pericentromeric	1173	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16401463	16402983	AT1TE54030	.	-	ATLINEIII	L1	LINE	1520	short	196	medium	1597493	pericentromeric	1635	no-CHH	no-CHH	.	.	.	.	.
Chr1	16403602	16403859	AT1TE54035	.	+	ATCOPIA31	Copia	LTR	257	short	8	low	1599632	pericentromeric	3774	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16403859	16403900	AT1TE54040	.	-	ATREP10A	Helitron	RC	41	tiny	279	high	1599889	pericentromeric	4031	no-CHH	no-CHH	.	.	.	.	.
Chr1	16403900	16403940	AT1TE54045	.	+	ATREP6	Helitron	RC	40	tiny	181	medium	1599930	pericentromeric	4072	no-CHH	no-CHH	.	.	.	.	.
Chr1	16403940	16404289	AT1TE54050	.	+	ATMUN1	MuDR	DNA	349	short	107	medium	1599970	pericentromeric	4112	no-RdDM	no-CHH	.	.	.	.	.
Chr1	16405585	16405733	AT1TE54055	.	-	ATCOPIA58	Copia	LTR	148	short	18	low	1601615	pericentromeric	4939	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	16405733	16406476	AT1TE54060	.	-	ENDOVIR1	Copia	LTR	743	short	15	low	1601763	pericentromeric	4196	no-RdDM	no-CHH	.	.	.	.	.
Chr1	16406476	16406569	AT1TE54065	.	-	ENDOVIR1	Copia	LTR	93	tiny	15	low	1602506	pericentromeric	4103	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	16406569	16406716	AT1TE54070	.	-	ATCOPIA58	Copia	LTR	147	short	18	low	1602599	pericentromeric	3956	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	16406731	16407941	AT1TE54075	.	-	ATHILA4	Gypsy	LTR	1210	short	250	high	1602761	pericentromeric	2731	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16412742	16413304	AT1TE54085	.	-	ATREP15	Helitron	RC	562	short	1003	high	1608772	pericentromeric	130	no-CHH	no-CHH	.	.	.	.	.
Chr1	16413304	16413340	AT1TE54090	.	-	ATREP10D	Helitron	RC	36	tiny	1295	high	1609334	pericentromeric	692	no-CHH	no-CHH	.	.	.	.	.
Chr1	16414104	16414129	AT1TE54095	.	+	ATIS112A	Harbinger	DNA	25	tiny	173	medium	1610134	pericentromeric	1227	PolIV-and-RDR6-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	16414129	16414869	AT1TE54100	.	+	ATIS112A	Harbinger	DNA	740	short	173	medium	1610159	pericentromeric	487	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	16418839	16420085	AT1TE54110	.	-	ATREP10D	Helitron	RC	1246	short	1295	high	1614869	pericentromeric	2817	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	16420401	16420783	AT1TE54115	.	+	ATN9_1	MuDR	DNA	382	short	65	medium	1616431	pericentromeric	3794	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	16421132	16424144	AT1TE54120	.	-	HELITRONY1B	Helitron	RC	3012	medium	414	high	1617162	pericentromeric	433	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16422436	16422474	AT1TE54125	.	-	ATREP3	Helitron	RC	38	tiny	1439	high	1618466	pericentromeric	2103	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	16422981	16423164	AT1TE54130	.	-	ATREP3	Helitron	RC	183	short	1439	high	1619011	pericentromeric	1413	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16423164	16423514	AT1TE54135	.	-	HELITRONY1B	Helitron	RC	350	short	414	high	1619194	pericentromeric	1063	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16424156	16424191	AT1TE54140	.	+	HELITRONY3	Helitron	RC	35	tiny	1399	high	1620186	pericentromeric	386	no-CHH	no-CHH	.	.	.	.	.
Chr1	16424191	16424295	AT1TE54145	.	+	ATREP3	Helitron	RC	104	short	1439	high	1620221	pericentromeric	282	no-CHH	no-CHH	.	.	.	.	.
Chr1	16430417	16430658	AT1TE54160	.	-	ATHATN2	HAT	DNA	241	short	46	low	1626447	pericentromeric	917	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr1	16431064	16431612	AT1TE54165	.	-	ATDNA12T3_2	.	DNA	548	short	660	high	1627094	pericentromeric	1229	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16432028	16432092	AT1TE54170	.	-	ATDNA12T3_2	.	DNA	64	tiny	660	high	1628058	pericentromeric	749	no-CHH	DCL3-RdDM	.	.	.	.	.
Chr1	16432509	16432572	AT1TE54175	.	-	ATDNA12T3_2	.	DNA	63	tiny	660	high	1628539	pericentromeric	269	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	16432993	16433056	AT1TE54180	.	-	ATDNA12T3_2	.	DNA	63	tiny	660	high	1629023	pericentromeric	47	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16433477	16433540	AT1TE54185	.	-	ATDNA12T3_2	.	DNA	63	tiny	660	high	1629507	pericentromeric	531	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr1	16433954	16434018	AT1TE54190	.	-	ATDNA12T3_2	.	DNA	64	tiny	660	high	1629984	pericentromeric	1008	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16438987	16439188	AT1TE54200	.	+	ATHILA4A	Gypsy	LTR	201	short	310	high	1635017	pericentromeric	430	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16442083	16443316	AT1TE54205	.	+	ATREP5	Helitron	RC	1233	short	624	high	1638113	pericentromeric	544	no-CHH	no-CHH	.	.	.	.	.
Chr1	16443316	16443339	AT1TE54210	.	+	ATREP11	Helitron	RC	23	tiny	841	high	1639346	pericentromeric	521	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	16447453	16447480	AT1TE54220	.	-	HELITRONY1D	Helitron	RC	27	tiny	756	high	1643483	pericentromeric	639	no-CHH	no-CHH	.	.	.	.	.
Chr1	16447480	16448518	AT1TE54225	.	+	ATREP3	Helitron	RC	1038	short	1439	high	1643510	pericentromeric	666	no-CHH	no-CHH	.	.	.	.	.
Chr1	16449025	16449303	AT1TE54230	.	+	ATLINE1A	L1	LINE	279	short	289	high	1645054	pericentromeric	2210	.	.	.	.	.	.	.
Chr1	16449870	16451234	AT1TE54235	.	+	ATMU1	MuDR	DNA	1364	short	59	medium	1645900	pericentromeric	1746	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	16451234	16451289	AT1TE54240	.	+	ATMU3	MuDR	DNA	55	tiny	15	low	1647264	pericentromeric	1691	no-RdDM	no-CHH	.	.	.	.	.
Chr1	16451657	16452658	AT1TE54245	.	+	ATREP10D	Helitron	RC	1001	short	1295	high	1647687	pericentromeric	322	no-RdDM	no-CHH	.	.	.	.	.
Chr1	16453796	16455250	AT1TE54250	.	-	ATREP15	Helitron	RC	1454	short	1003	high	1649826	pericentromeric	0	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	16455250	16455556	AT1TE54255	.	-	ATDNAI27T9A	MuDR	DNA	306	short	116	medium	1651280	pericentromeric	1446	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16456505	16456614	AT1TE54260	.	-	VANDAL5A	MuDR	DNA	109	short	56	medium	1652535	pericentromeric	2701	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	16456703	16456891	AT1TE54265	.	-	LIMPET1	MuDR	DNA	188	short	116	medium	1652733	pericentromeric	2899	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	16457323	16457618	AT1TE54270	.	-	ATDNAI27T9A	MuDR	DNA	295	short	116	medium	1653353	pericentromeric	3519	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	16457618	16457784	AT1TE54275	.	-	ATDNAI27T9B	MuDR	DNA	166	short	43	low	1653648	pericentromeric	3396	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	16458560	16458613	AT1TE54280	.	+	ATDNAI26T9	MuDR	DNA	54	tiny	25	low	1654589	pericentromeric	2567	.	.	.	.	.	.	.
Chr1	16458645	16459076	AT1TE54285	.	-	ATDNAI27T9C	MuDR	DNA	431	short	108	medium	1654675	pericentromeric	2104	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	16459956	16460135	AT1TE54290	.	-	VANDAL5A	MuDR	DNA	179	short	56	medium	1655986	pericentromeric	1045	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16460214	16460831	AT1TE54295	.	+	ATREP4	Helitron	RC	617	short	832	high	1656244	pericentromeric	349	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	16461603	16461970	AT1TE54300	.	-	ATREP15	Helitron	RC	367	short	1003	high	1657633	pericentromeric	132	no-CHH	no-CHH	.	.	.	.	.
Chr1	16461972	16462076	AT1TE54305	.	-	ATREP5	Helitron	RC	104	short	624	high	1658002	pericentromeric	501	no-RdDM	no-CHH	.	.	.	.	.
Chr1	16462600	16463520	AT1TE54310	.	+	ATHILA4	Gypsy	LTR	920	short	250	high	1658630	pericentromeric	1129	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16463540	16464667	AT1TE54315	.	-	ATREP4	Helitron	RC	1127	short	832	high	1659570	pericentromeric	502	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	16467477	16467772	AT1TE54320	.	+	ATHATN4	HAT	DNA	295	short	56	medium	1663507	pericentromeric	411	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	16470871	16471248	AT1TE54330	.	+	Unassigned	.	Unassigned	377	short	.	low	1666901	pericentromeric	524	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	16474621	16475037	AT1TE54340	.	-	VANDAL3	MuDR	DNA	416	short	177	medium	1670651	pericentromeric	1355	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	16475234	16475348	AT1TE54345	.	-	VANDAL3	MuDR	DNA	114	short	177	medium	1671264	pericentromeric	1968	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	16475348	16476987	AT1TE54350	.	-	VANDAL3	MuDR	DNA	1639	short	177	medium	1671378	pericentromeric	1531	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16475832	16475875	AT1TE54355	.	-	VANDAL3	MuDR	DNA	43	tiny	177	medium	1671862	pericentromeric	2566	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	16477000	16477163	AT1TE54360	.	+	HELITRONY1A	Helitron	RC	163	short	271	high	1673030	pericentromeric	1355	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr1	16477163	16477700	AT1TE54365	.	+	ATHPOGO	Pogo	DNA	537	short	25	low	1673193	pericentromeric	818	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16477700	16478045	AT1TE54370	.	+	ATREP13	Helitron	RC	345	short	106	medium	1673730	pericentromeric	473	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16478045	16478334	AT1TE54375	.	-	ATREP3	Helitron	RC	289	short	1439	high	1674075	pericentromeric	184	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	16482958	16483451	AT1TE54385	.	-	TAG1	HAT	DNA	493	short	28	low	1678988	pericentromeric	369	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	16483792	16483982	AT1TE54390	.	-	TAG3N1	HAT	DNA	190	short	97	medium	1679822	pericentromeric	369	no-CHH	no-CHH	.	.	.	.	.
Chr1	16488880	16491738	AT1TE54400	.	-	ATCOPIA48	Copia	LTR	2858	medium	15	low	1684910	pericentromeric	582	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16492933	16493332	AT1TE54405	.	+	ATREP3	Helitron	RC	399	short	1439	high	1688963	pericentromeric	1747	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16493332	16494635	AT1TE54410	.	+	ATREP10B	Helitron	RC	1303	short	491	high	1689362	pericentromeric	444	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16494635	16494685	AT1TE54415	.	+	ATREP15	Helitron	RC	50	tiny	1003	high	1690665	pericentromeric	394	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16496911	16497372	AT1TE54420	.	+	HARBINGER	Harbinger	DNA	461	short	90	medium	1692941	pericentromeric	0	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	16498298	16498404	AT1TE54425	.	-	ATHILA7	Gypsy	LTR	106	short	134	medium	1694328	pericentromeric	921	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16500125	16500851	AT1TE54430	.	-	ATREP3	Helitron	RC	726	short	1439	high	1696155	pericentromeric	2748	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	16500851	16501097	AT1TE54435	.	-	HELITRONY1C	Helitron	RC	246	short	120	medium	1696881	pericentromeric	3474	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	16501403	16502940	AT1TE54440	.	+	ATGP5	Gypsy	LTR	1537	short	86	medium	1697433	pericentromeric	4026	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	16501576	16502669	AT1TE54445	.	-	ATCOPIA21	Copia	LTR	1093	short	14	low	1697606	pericentromeric	4199	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	16504653	16505537	AT1TE54450	.	+	ATCOPIA11	Copia	LTR	884	short	26	low	1700683	pericentromeric	3185	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	16505599	16506274	AT1TE54455	.	+	ATCOPIA4	Copia	LTR	675	short	11	low	1701629	pericentromeric	2448	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16506274	16506390	AT1TE54460	.	+	ATCOPIA67	Copia	LTR	116	short	15	low	1702304	pericentromeric	2332	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	16506390	16506510	AT1TE54465	.	+	ATCOPIA25	Copia	LTR	120	short	9	low	1702420	pericentromeric	2212	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16509062	16509235	AT1TE54470	.	-	ATLINE2	L1	LINE	173	short	138	medium	1705092	pericentromeric	0	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	16509770	16509814	AT1TE54475	.	-	ATHILA5	Gypsy	LTR	44	tiny	131	medium	1705800	pericentromeric	0	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	16509814	16528903	AT1TE54480	.	-	ATHILA5	Gypsy	LTR	19089	long	131	medium	1705844	pericentromeric	0	no-RdDM	no-RdDM	ExpressedAndAnnotated	16510847,16512743,16521879,16512743,16520531,16521349,16521879,16521879	16509815,16510526,16510703,16512184,16519798,16521066,16521091,16521313	-,-,-,-,-,-,-,-	transcript_id-"fe382598-3824-401d-8cc2-6a14b655593b|3",transcript_id-"26fcbfa7-0609-4e61-a47e-6ad619f2c1e9|7",transcript_id-"43937fcf-e4d2-4128-9680-3009b6379918|47",transcript_id-"30bd61ae-9f3e-4d28-84c3-49b01aad2b0d|4",transcript_id-"b11d76fb-859c-4b09-950f-ed447273bda5|14",transcript_id-"cc63725f-750d-4037-ba21-7081dec05ad8|3",transcript_id-"6fece7b3-3124-4144-9b86-cc40c672932e|12",transcript_id-"90605811-e1b2-4ade-b23c-84cf66942ad8|7"
Chr1	16531299	16531668	AT1TE54485	.	+	ATCOPIA38B	Copia	LTR	369	short	5	low	1727329	pericentromeric	234	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	16531680	16531734	AT1TE54490	.	+	ATCOPIA48	Copia	LTR	54	tiny	15	low	1727710	pericentromeric	615	no-RdDM	no-CHH	.	.	.	.	.
Chr1	16531734	16531788	AT1TE54495	.	+	ATCOPIA21	Copia	LTR	54	tiny	14	low	1727764	pericentromeric	669	no-RdDM	no-CHH	.	.	.	.	.
Chr1	16531788	16533312	AT1TE54500	.	+	ATCOPIA25	Copia	LTR	1524	short	9	low	1727818	pericentromeric	723	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	16533312	16533445	AT1TE54505	.	+	ATCOPIA2	Copia	LTR	133	short	6	low	1729342	pericentromeric	2247	no-RdDM	no-CHH	.	.	.	.	.
Chr1	16533570	16533779	AT1TE54510	.	+	ATGP5	Gypsy	LTR	209	short	86	medium	1729600	pericentromeric	2505	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16533987	16534475	AT1TE54515	.	-	HELITRON1	Helitron	RC	488	short	130	medium	1730017	pericentromeric	2922	no-RdDM	no-CHH	.	.	.	.	.
Chr1	16538102	16538504	AT1TE54525	.	+	ATREP5	Helitron	RC	402	short	624	high	1734132	pericentromeric	7037	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	16539822	16539970	AT1TE54530	.	-	TSCL	.	LINE?	148	short	81	medium	1735852	pericentromeric	8538	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	16540005	16540070	AT1TE54535	.	-	ATREP10A	Helitron	RC	65	tiny	279	high	1736035	pericentromeric	8438	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	16543129	16543277	AT1TE54545	.	-	TSCL	.	LINE?	148	short	81	medium	1739159	pericentromeric	5231	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	16544395	16545449	AT1TE54550	.	-	HELITRONY3	Helitron	RC	1054	short	1399	high	1740425	pericentromeric	3059	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16545449	16545506	AT1TE54555	.	+	HELITRONY1B	Helitron	RC	57	tiny	414	high	1741479	pericentromeric	3002	no-CHH	no-CHH	.	.	.	.	.
Chr1	16546946	16548026	AT1TE54560	.	-	ATREP10D	Helitron	RC	1080	short	1295	high	1742976	pericentromeric	482	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16548026	16548070	AT1TE54565	.	-	ATREP15	Helitron	RC	44	tiny	1003	high	1744056	pericentromeric	438	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	16548185	16548352	AT1TE54570	.	-	ATMU7	MuDR	DNA	167	short	32	low	1744215	pericentromeric	156	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16551473	16551715	AT1TE54580	.	+	VANDAL10	MuDR	DNA	242	short	13	low	1747503	pericentromeric	1216	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	16551715	16557069	AT1TE54585	.	-	ATCOPIA93	Copia	LTR	5354	long	10	low	1747745	pericentromeric	1458	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	16557069	16557858	AT1TE54590	.	+	VANDAL9	MuDR	DNA	789	short	43	low	1753099	pericentromeric	5952	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	16557858	16557972	AT1TE54595	.	+	VANDAL9	MuDR	DNA	114	short	43	low	1753888	pericentromeric	5838	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	16557972	16558890	AT1TE54600	.	+	VANDAL11	MuDR	DNA	918	short	18	low	1754002	pericentromeric	4920	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	16561040	16562084	AT1TE54605	.	-	ATREP19	.	DNA	1044	short	189	medium	1757070	pericentromeric	1726	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	16564147	16564523	AT1TE54610	.	-	ATMUNX1	MuDR	DNA	376	short	155	medium	1760177	pericentromeric	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16566604	16566700	AT1TE54615	.	-	VANDAL3	MuDR	DNA	96	tiny	177	medium	1762634	pericentromeric	0	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16569872	16575243	AT1TE54625	.	-	ATCOPIA35	Copia	LTR	5371	long	22	low	1765902	pericentromeric	708	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	16576718	16577142	AT1TE54630	.	+	BRODYAGA1A	MuDR	DNA	424	short	586	high	1772748	pericentromeric	416	no-CHH	no-CHH	.	.	.	.	.
Chr1	16581795	16581942	AT1TE54640	.	+	ATENSPM5	En-Spm	DNA	147	short	111	medium	1777825	pericentromeric	995	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	16582724	16583222	AT1TE54645	.	+	ATENSPM9	En-Spm	DNA	498	short	97	medium	1778754	pericentromeric	1924	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	16581764	16583808	+	transcript_id-"66e7d600-8eb4-4c3f-8265-4cae2b380ac0|3"
Chr1	16584060	16584100	AT1TE54650	.	+	ATHILA5	Gypsy	LTR	40	tiny	131	medium	1780090	pericentromeric	3260	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	16584100	16586369	AT1TE54655	.	+	ATHILA5	Gypsy	LTR	2269	medium	131	medium	1780130	pericentromeric	3300	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	16586369	16586476	AT1TE54660	.	+	ATHILA3	Gypsy	LTR	107	short	243	high	1782399	pericentromeric	5569	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	16586476	16589501	AT1TE54665	.	+	ATHILA0_I	Gypsy	LTR	3025	medium	138	medium	1782506	pericentromeric	5676	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	16589501	16592562	AT1TE54670	.	-	ATREP5	Helitron	RC	3061	medium	624	high	1785531	pericentromeric	8701	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	16592013	16591702	-	transcript_id-"ee7eb1f0-ece7-4048-ac29-04ff0a00630a|3"
Chr1	16592562	16593740	AT1TE54675	.	-	ATREP5	Helitron	RC	1178	short	624	high	1788592	pericentromeric	11762	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	16593740	16594005	AT1TE54680	.	-	HELITRONY1D	Helitron	RC	265	short	756	high	1789770	pericentromeric	12940	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16594005	16594147	AT1TE54685	.	+	ATREP3	Helitron	RC	142	short	1439	high	1790035	pericentromeric	13205	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16594798	16595103	AT1TE54690	.	+	BRODYAGA1A	MuDR	DNA	305	short	586	high	1790828	pericentromeric	13998	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	16595103	16595133	AT1TE54695	.	-	TNAT2A	.	DNA	30	tiny	38	low	1791133	pericentromeric	14303	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	16595997	16596124	AT1TE54700	.	+	VANDAL9	MuDR	DNA	128	short	43	low	1792026	pericentromeric	15196	.	.	LowExpressed	.	.	.	.
Chr1	16596124	16596175	AT1TE54705	.	-	HELITRONY3	Helitron	RC	51	tiny	1399	high	1792154	pericentromeric	15324	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	16596175	16598192	AT1TE54710	.	+	ARNOLDY1	MuDR	DNA	2017	medium	237	high	1792205	pericentromeric	15375	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	16598192	16598634	AT1TE54715	.	+	VANDAL9	MuDR	DNA	442	short	43	low	1794222	pericentromeric	17392	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	16598989	16600072	AT1TE54720	.	+	ATREP15	Helitron	RC	1083	short	1003	high	1795019	pericentromeric	17799	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16600131	16600658	AT1TE54725	.	-	ATIS112A	Harbinger	DNA	527	short	173	medium	1796161	pericentromeric	17213	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16601424	16601517	AT1TE54730	.	-	ATREP11	Helitron	RC	93	tiny	841	high	1797454	pericentromeric	16354	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	16601518	16601585	AT1TE54735	.	-	BRODYAGA1	MuDR	DNA	68	tiny	251	high	1797547	pericentromeric	16286	.	.	.	.	.	.	.
Chr1	16601585	16602145	AT1TE54740	.	+	BRODYAGA2	MuDR	DNA	560	short	525	high	1797615	pericentromeric	15726	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16606611	16607394	AT1TE54750	.	+	Unassigned	.	Unassigned	783	short	.	low	1802641	pericentromeric	10477	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	16607405	16607486	AT1TE54755	.	-	ATMUNX1	MuDR	DNA	81	tiny	155	medium	1803435	pericentromeric	10385	no-CHH	DCL3-RdDM	.	.	.	.	.
Chr1	16607488	16611583	AT1TE54760	.	+	ATENSPM1A	En-Spm	DNA	4095	medium	77	medium	1803518	pericentromeric	6288	no-RdDM	no-RdDM	ExpressedAndAnnotated	16608378	16611147	+	transcript_id-"d5832d1a-fe6b-4e58-a573-7e4367ee94d8|6"
Chr1	16611583	16611866	AT1TE54765	.	+	ATMUNX1	MuDR	DNA	283	short	155	medium	1807613	pericentromeric	6005	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr1	16613027	16616953	AT1TE54770	.	-	HELITRONY3	Helitron	RC	3926	medium	1399	high	1809057	pericentromeric	918	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16620650	16620830	AT1TE54780	.	+	ATCOPIA80	Copia	LTR	180	short	7	low	1816680	pericentromeric	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	16624425	16624533	AT1TE54790	.	+	BRODYAGA2	MuDR	DNA	108	short	525	high	1820455	pericentromeric	40	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16624533	16625815	AT1TE54795	.	-	BRODYAGA2	MuDR	DNA	1282	short	525	high	1820563	pericentromeric	148	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16626013	16626036	AT1TE54800	.	-	ATLANTYS1	Gypsy	LTR	23	tiny	153	medium	1822043	pericentromeric	1628	no-CHH	no-RdDM	.	.	.	.	.
Chr1	16626036	16637234	AT1TE54805	.	-	ATLANTYS1	Gypsy	LTR	11198	long	153	medium	1822066	pericentromeric	1651	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	16626898,16626982,16637020	16629933,16629934,16636803	+,+,-	transcript_id-"64818b03-823a-4223-91fe-8b9329b9dd36|3",transcript_id-"ed39018d-11d0-4d7d-8825-23dc317456c7|11",transcript_id-"d528414d-f438-49a1-a3b4-e5a5aa01888d|8"
Chr1	16637234	16637250	AT1TE54810	.	-	ATLANTYS1	Gypsy	LTR	16	tiny	153	medium	1833264	pericentromeric	9683	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	16637545	16637681	AT1TE54815	.	+	ARNOLD2	MuDR	DNA	136	short	68	medium	1833575	pericentromeric	9252	no-CHH	no-RdDM	LowExpressed	.	.	.	.
Chr1	16637836	16638048	AT1TE54820	.	-	ATCOPIA81	Copia	LTR	212	short	6	low	1833866	pericentromeric	8885	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	16638815	16639056	AT1TE54825	.	-	ATCOPIA2	Copia	LTR	241	short	6	low	1834845	pericentromeric	7877	no-CHH	no-CHH	.	.	.	.	.
Chr1	16639056	16639093	AT1TE54830	.	-	ATRE1	Copia	LTR	37	tiny	22	low	1835086	pericentromeric	7840	no-CHH	no-CHH	.	.	.	.	.
Chr1	16639093	16640684	AT1TE54835	.	-	ATCOPIA25	Copia	LTR	1591	short	9	low	1835123	pericentromeric	6249	no-CHH	no-CHH	.	.	.	.	.
Chr1	16640684	16640766	AT1TE54840	.	-	ATCOPIA48	Copia	LTR	82	tiny	15	low	1836714	pericentromeric	6167	no-CHH	no-CHH	.	.	.	.	.
Chr1	16640766	16641070	AT1TE54845	.	-	ATCOPIA62	Copia	LTR	304	short	16	low	1836796	pericentromeric	5863	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	16641355	16641748	AT1TE54850	.	-	ATCOPIA55	Copia	LTR	393	short	9	low	1837385	pericentromeric	5185	no-CHH	no-CHH	.	.	.	.	.
Chr1	16650059	16650725	AT1TE54880	.	-	ATIS112A	Harbinger	DNA	666	short	173	medium	1846089	pericentromeric	1664	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16650890	16651487	AT1TE54885	.	-	BRODYAGA1	MuDR	DNA	597	short	251	high	1846920	pericentromeric	2495	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16651812	16651985	AT1TE54890	.	+	ATREP15	Helitron	RC	173	short	1003	high	1847842	pericentromeric	2059	no-RdDM	no-CHH	.	.	.	.	.
Chr1	16651985	16652099	AT1TE54895	.	-	ATREP15	Helitron	RC	114	short	1003	high	1848015	pericentromeric	1945	no-CHH	no-CHH	.	.	.	.	.
Chr1	16652099	16653994	AT1TE54900	.	-	ATREP4	Helitron	RC	1895	short	832	high	1848129	pericentromeric	50	no-CHH	no-CHH	.	.	.	.	.
Chr1	16653994	16654044	AT1TE54905	.	+	HELITRONY3	Helitron	RC	50	tiny	1399	high	1850024	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	16658268	16658518	AT1TE54915	.	+	ATLINE1_3A	L1	LINE	250	short	160	medium	1854298	pericentromeric	640	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16659528	16659685	AT1TE54920	.	+	BRODYAGA1A	MuDR	DNA	157	short	586	high	1855558	pericentromeric	1900	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16659687	16664330	AT1TE54925	.	-	ATMU10	MuDR	DNA	4643	medium	87	medium	1855717	pericentromeric	2059	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	16659986,16661041,16660909,16661023	16660755,16660776,16660777,16660816	+,-,-,-	transcript_id-"fd02b9f8-37b5-43c6-84d6-5271789bda1b|12",transcript_id-"38d06f14-a848-4ab6-83ee-8021c3eafc8b|3",transcript_id-"c3cba3a7-8ac6-4958-acac-c85963fca118|5",transcript_id-"d51d13fa-6f8d-4158-9e03-1e826d07ee6f|5"
Chr1	16666208	16666702	AT1TE54930	.	-	ATDNA12T3_2	.	DNA	494	short	660	high	1862238	pericentromeric	5879	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16666702	16666788	AT1TE54935	.	-	ATDNA12T3_2	.	DNA	86	tiny	660	high	1862732	pericentromeric	5793	RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16667242	16667899	AT1TE54940	.	+	ATCOPIA26	Copia	LTR	657	short	19	low	1863272	pericentromeric	4682	no-CHH	no-CHH	.	.	.	.	.
Chr1	16668760	16668860	AT1TE54945	.	-	ATDNA2T9C	MuDR	DNA	100	short	242	high	1864790	pericentromeric	3721	no-CHH	no-CHH	.	.	.	.	.
Chr1	16668860	16669534	AT1TE54950	.	-	BRODYAGA2	MuDR	DNA	674	short	525	high	1864890	pericentromeric	3047	no-CHH	no-CHH	.	.	.	.	.
Chr1	16673531	16673695	AT1TE54960	.	+	ATCOPIA68	Copia	LTR	164	short	43	low	1869561	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	16673695	16673735	AT1TE54965	.	-	VANDAL17	MuDR	DNA	40	tiny	178	medium	1869725	pericentromeric	0	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16674907	16675422	AT1TE54970	.	+	ATCOPIA41	Copia	LTR	515	short	39	low	1870937	pericentromeric	955	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	16675424	16676972	AT1TE54975	.	+	ATLINE1_2	L1	LINE	1548	short	41	low	1871454	pericentromeric	1472	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16676972	16677131	AT1TE54980	.	+	ATCOPIA41	Copia	LTR	159	short	39	low	1873002	pericentromeric	3020	no-RdDM	no-CHH	.	.	.	.	.
Chr1	16677321	16677343	AT1TE54985	.	+	ATCOPIA41	Copia	LTR	23	tiny	39	low	1873350	pericentromeric	3368	.	.	.	.	.	.	.
Chr1	16677343	16680139	AT1TE54990	.	+	ENDOVIR1	Copia	LTR	2796	medium	15	low	1873373	pericentromeric	1129	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16680152	16680180	AT1TE54995	.	+	ATCOPIA41	Copia	LTR	29	tiny	39	low	1876181	pericentromeric	1088	.	.	.	.	.	.	.
Chr1	16680180	16683546	AT1TE55000	.	+	ATCOPIA41	Copia	LTR	3366	medium	39	low	1876210	pericentromeric	0	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16683549	16683590	AT1TE55005	.	+	ATCOPIA42	Copia	LTR	42	tiny	35	low	1879578	pericentromeric	615	.	.	.	.	.	.	.
Chr1	16683893	16684692	AT1TE55010	.	-	ATREP5	Helitron	RC	800	short	624	high	1879922	pericentromeric	959	.	.	.	.	.	.	.
Chr1	16685257	16686269	AT1TE55015	.	+	ATDNA12T3_2	.	DNA	1012	short	660	high	1881287	pericentromeric	1367	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16686269	16687057	AT1TE55020	.	-	HELITRONY3	Helitron	RC	788	short	1399	high	1882299	pericentromeric	579	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	16687057	16687087	AT1TE55025	.	-	ATREP15	Helitron	RC	30	tiny	1003	high	1883087	pericentromeric	549	no-CHH	no-CHH	.	.	.	.	.
Chr1	16689534	16689603	AT1TE55030	.	-	ATREP4	Helitron	RC	69	tiny	832	high	1885564	pericentromeric	32	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	16689603	16689706	AT1TE55035	.	-	ATREP3	Helitron	RC	103	short	1439	high	1885633	pericentromeric	101	no-CHH	no-CHH	.	.	.	.	.
Chr1	16689706	16690109	AT1TE55040	.	-	ATREP5	Helitron	RC	403	short	624	high	1885736	pericentromeric	204	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16690109	16690131	AT1TE55045	.	-	ATREP5	Helitron	RC	22	tiny	624	high	1886139	pericentromeric	607	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	16690373	16690630	AT1TE55050	.	-	ATREP4	Helitron	RC	258	short	832	high	1886402	pericentromeric	870	.	.	.	.	.	.	.
Chr1	16690631	16691400	AT1TE55055	.	+	BRODYAGA2	MuDR	DNA	770	short	525	high	1886660	pericentromeric	1128	.	.	.	.	.	.	.
Chr1	16691400	16691533	AT1TE55060	.	-	HELITRONY3	Helitron	RC	133	short	1399	high	1887430	pericentromeric	1898	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	16691704	16691734	AT1TE55065	.	-	ATCOPIA42	Copia	LTR	31	tiny	35	low	1887733	pericentromeric	2201	.	.	.	.	.	.	.
Chr1	16691747	16695154	AT1TE55070	.	-	ATCOPIA41	Copia	LTR	3407	medium	39	low	1887777	pericentromeric	2245	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	16695154	16697937	AT1TE55075	.	-	ENDOVIR1	Copia	LTR	2783	medium	15	low	1891184	pericentromeric	5652	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16697938	16697960	AT1TE55080	.	-	ATCOPIA41	Copia	LTR	23	tiny	39	low	1893967	pericentromeric	8435	.	.	.	.	.	.	.
Chr1	16698149	16698313	AT1TE55085	.	-	ATCOPIA42	Copia	LTR	164	short	35	low	1894179	pericentromeric	8647	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	16698313	16699068	AT1TE55090	.	-	ATLINE1_1	L1	LINE	755	short	61	medium	1894343	pericentromeric	8811	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	16699068	16699412	AT1TE55095	.	+	ATREP4	Helitron	RC	344	short	832	high	1895098	pericentromeric	8788	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16699412	16701967	AT1TE55100	.	+	ATREP4	Helitron	RC	2555	medium	832	high	1895442	pericentromeric	6233	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16701009	16701424	AT1TE55105	.	+	TAT1_ATH	Gypsy	LTR	415	short	87	medium	1897039	pericentromeric	6776	no-RdDM	no-CHH	.	.	.	.	.
Chr1	16701967	16702565	AT1TE55110	.	+	ATREP4	Helitron	RC	598	short	832	high	1897997	pericentromeric	5635	no-CHH	no-CHH	.	.	.	.	.
Chr1	16702565	16702962	AT1TE55115	.	-	ATREP7	Helitron	RC	397	short	164	medium	1898595	pericentromeric	5238	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	16704696	16704894	AT1TE55120	.	-	ATHILA8A	Gypsy	LTR	198	short	97	medium	1900726	pericentromeric	3306	no-CHH	no-CHH	.	.	.	.	.
Chr1	16705071	16705371	AT1TE55125	.	+	ATHILA8A	Gypsy	LTR	300	short	97	medium	1901101	pericentromeric	2829	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	16705842	16705920	AT1TE55130	.	-	HELITRONY1D	Helitron	RC	78	tiny	756	high	1901872	pericentromeric	2280	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	16705921	16706785	AT1TE55135	.	-	BRODYAGA1	MuDR	DNA	865	short	251	high	1901950	pericentromeric	1415	.	.	.	.	.	.	.
Chr1	16707176	16707212	AT1TE55140	.	+	ATREP10B	Helitron	RC	36	tiny	491	high	1903206	pericentromeric	988	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16707212	16707792	AT1TE55145	.	+	HELITRONY1D	Helitron	RC	580	short	756	high	1903242	pericentromeric	408	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16709810	16709856	AT1TE55150	.	+	ATREP7	Helitron	RC	46	tiny	164	medium	1905840	pericentromeric	289	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr1	16709856	16710251	AT1TE55155	.	+	ATREP7	Helitron	RC	395	short	164	medium	1905886	pericentromeric	335	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16710252	16710275	AT1TE55160	.	+	ATREP7	Helitron	RC	24	tiny	164	medium	1906281	pericentromeric	730	.	.	.	.	.	.	.
Chr1	16710299	16710326	AT1TE55165	.	+	ATENSPM9	En-Spm	DNA	27	tiny	97	medium	1906329	pericentromeric	778	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr1	16710326	16710417	AT1TE55170	.	+	ATENSPM9	En-Spm	DNA	91	tiny	97	medium	1906356	pericentromeric	805	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	16710417	16710550	AT1TE55175	.	-	ATREP3	Helitron	RC	133	short	1439	high	1906447	pericentromeric	896	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	16710550	16711103	AT1TE55180	.	+	ATREP4	Helitron	RC	553	short	832	high	1906580	pericentromeric	1029	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16711479	16711508	AT1TE55185	.	+	BRODYAGA1A	MuDR	DNA	29	tiny	586	high	1907509	pericentromeric	1958	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	16711508	16712044	AT1TE55190	.	+	HELITRONY3	Helitron	RC	536	short	1399	high	1907538	pericentromeric	1987	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16712044	16712140	AT1TE55195	.	+	ATREP7	Helitron	RC	96	tiny	164	medium	1908074	pericentromeric	2515	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16712140	16713041	AT1TE55200	.	+	ATREP7	Helitron	RC	901	short	164	medium	1908170	pericentromeric	1614	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	16713041	16713099	AT1TE55205	.	+	ATREP7	Helitron	RC	58	tiny	164	medium	1909071	pericentromeric	1556	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	16713099	16713183	AT1TE55210	.	+	ATREP6	Helitron	RC	84	tiny	181	medium	1909129	pericentromeric	1472	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	16719531	16720312	AT1TE55230	.	+	ATREP10A	Helitron	RC	781	short	279	high	1915561	pericentromeric	875	no-CHH	no-CHH	.	.	.	.	.
Chr1	16720312	16720367	AT1TE55235	.	+	ATREP10C	Helitron	RC	55	tiny	123	medium	1916342	pericentromeric	1656	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16720367	16720420	AT1TE55240	.	+	ATREP10	Helitron	RC	53	tiny	63	medium	1916397	pericentromeric	1711	no-CHH	no-CHH	.	.	.	.	.
Chr1	16720953	16721511	AT1TE55245	.	-	ATREP15	Helitron	RC	558	short	1003	high	1916983	pericentromeric	2297	no-CHH	no-CHH	.	.	.	.	.
Chr1	16721511	16721684	AT1TE55250	.	-	HELITRONY3	Helitron	RC	173	short	1399	high	1917541	pericentromeric	2855	no-CHH	no-CHH	.	.	.	.	.
Chr1	16721684	16724136	AT1TE55255	.	-	ARNOLDY2	MuDR	DNA	2452	medium	288	high	1917714	pericentromeric	636	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16724136	16724238	AT1TE55260	.	+	HELITRONY1A	Helitron	RC	102	short	271	high	1920166	pericentromeric	534	no-RdDM	no-CHH	.	.	.	.	.
Chr1	16732010	16732148	AT1TE55290	.	-	TA11	L1	LINE	138	short	157	medium	1928040	pericentromeric	5444	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16732148	16733523	AT1TE55295	.	-	ATLINE1_4	L1	LINE	1375	short	102	medium	1928178	pericentromeric	5582	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16737734	16738517	AT1TE55305	.	-	HELITRONY3	Helitron	RC	783	short	1399	high	1933764	pericentromeric	791	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16738519	16739172	AT1TE55310	.	-	ATDNA2T9C	MuDR	DNA	653	short	242	high	1934549	pericentromeric	136	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	16742010	16742303	AT1TE55315	.	+	ATDNA12T3_2	.	DNA	293	short	660	high	1938040	pericentromeric	497	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16742378	16751122	AT1TE55320	.	-	ATENSPM6	En-Spm	DNA	8744	long	151	medium	1938408	pericentromeric	865	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	16746028,16746028,16744481,16750661,16748901	16743082,16743088,16743137,16747980,16748080	-,-,-,-,-	transcript_id-"610b4015-f3c2-4af9-a9ec-65d47e02c76a|28",transcript_id-"eb022537-4416-475c-97d9-665265be7db8|4",transcript_id-"fa02b6ae-6409-4d67-944e-087b768b2af4|3",transcript_id-"faf44729-be15-4c98-93e4-8924ce33febb|4",transcript_id-"226e79ae-0336-4c75-8eeb-0dbc2afd19ea|5"
Chr1	16751223	16751705	AT1TE55325	.	+	ATHAT1	HAT	DNA	482	short	105	medium	1947253	pericentromeric	2238	RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16751408	16751576	AT1TE55330	.	-	HELITRONY1D	Helitron	RC	168	short	756	high	1947438	pericentromeric	2367	no-CHH	no-CHH	.	.	.	.	.
Chr1	16752417	16752615	AT1TE55335	.	-	ATREP10C	Helitron	RC	198	short	123	medium	1948447	pericentromeric	1328	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16752635	16752942	AT1TE55340	.	+	ATLINEIII	L1	LINE	307	short	196	medium	1948665	pericentromeric	1001	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	16752947	16753927	AT1TE55345	.	-	ATREP10D	Helitron	RC	980	short	1295	high	1948977	pericentromeric	16	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	16753927	16753956	AT1TE55350	.	+	HELITRONY3	Helitron	RC	29	tiny	1399	high	1949957	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	16753956	16754009	AT1TE55355	.	-	HELITRONY1E	Helitron	RC	53	tiny	447	high	1949986	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	16754572	16755211	AT1TE55360	.	+	ATCOPIA41	Copia	LTR	639	short	39	low	1950602	pericentromeric	0	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	16756119	16756546	AT1TE55365	.	+	HELITRON1	Helitron	RC	427	short	130	medium	1952149	pericentromeric	449	no-CHH	no-CHH	.	.	.	.	.
Chr1	16756546	16757193	AT1TE55370	.	+	HELITRON3	Helitron	RC	647	short	53	medium	1952576	pericentromeric	876	no-CHH	no-CHH	.	.	.	.	.
Chr1	16758779	16758954	AT1TE55375	.	+	HELITRONY1D	Helitron	RC	175	short	756	high	1954809	pericentromeric	271	no-CHH	DCL3-RdDM	.	.	.	.	.
Chr1	16759462	16759933	AT1TE55380	.	+	ATHILA7	Gypsy	LTR	471	short	134	medium	1955492	pericentromeric	743	no-CHH	no-CHH	.	.	.	.	.
Chr1	16760357	16760497	AT1TE55385	.	+	RathE1_cons	.	RathE1_cons	140	short	213	high	1956387	pericentromeric	179	no-CHH	no-CHH	.	.	.	.	.
Chr1	16765384	16765458	AT1TE55395	.	+	ATLINE1_3A	L1	LINE	74	tiny	160	medium	1961414	pericentromeric	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16767627	16768674	AT1TE55400	.	-	ATREP10D	Helitron	RC	1047	short	1295	high	1963657	pericentromeric	404	no-CHH	no-CHH	.	.	.	.	.
Chr1	16768712	16768759	AT1TE55405	.	-	ATLINE1A	L1	LINE	47	tiny	289	high	1964742	pericentromeric	1489	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16768760	16768889	AT1TE55410	.	-	ATLINE1A	L1	LINE	130	short	289	high	1964789	pericentromeric	1536	.	.	.	.	.	.	.
Chr1	16769733	16770051	AT1TE55415	.	-	ATHATN1	HAT	DNA	318	short	69	medium	1965763	pericentromeric	2510	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16773498	16773744	AT1TE55425	.	+	ATSINE4	.	SINE	247	short	98	medium	1969527	pericentromeric	1290	.	.	.	.	.	.	.
Chr1	16774263	16774292	AT1TE55430	.	-	ATLINE1A	L1	LINE	29	tiny	289	high	1970293	pericentromeric	742	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16774292	16774469	AT1TE55435	.	+	BRODYAGA1A	MuDR	DNA	177	short	586	high	1970322	pericentromeric	565	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16774469	16774490	AT1TE55440	.	+	BRODYAGA1A	MuDR	DNA	21	tiny	586	high	1970499	pericentromeric	544	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	16777874	16779338	AT1TE55450	.	-	ATREP15	Helitron	RC	1464	short	1003	high	1973904	pericentromeric	692	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16779338	16779430	AT1TE55455	.	-	BRODYAGA2	MuDR	DNA	92	tiny	525	high	1975368	pericentromeric	1179	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16779430	16779507	AT1TE55460	.	+	ATREP3	Helitron	RC	77	tiny	1439	high	1975460	pericentromeric	1102	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16789445	16789497	AT1TE55490	.	-	ATREP9	Helitron	RC	52	tiny	201	high	1985475	pericentromeric	127	no-CHH	no-CHH	.	.	.	.	.
Chr1	16789497	16789887	AT1TE55495	.	-	HELITRONY1D	Helitron	RC	390	short	756	high	1985527	pericentromeric	179	no-CHH	no-CHH	.	.	.	.	.
Chr1	16789887	16790639	AT1TE55500	.	-	ATREP8	Helitron	RC	752	short	75	medium	1985917	pericentromeric	569	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	16790639	16790674	AT1TE55505	.	-	ATREP5	Helitron	RC	35	tiny	624	high	1986669	pericentromeric	1321	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16790858	16791073	AT1TE55510	.	-	ATMUNX1	MuDR	DNA	215	short	155	medium	1986888	pericentromeric	1540	no-RdDM	no-CHH	.	.	.	.	.
Chr1	16791073	16791276	AT1TE55515	.	-	ATTIRX1D	.	DNA	203	short	28	low	1987103	pericentromeric	1755	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	16791276	16791723	AT1TE55520	.	+	ATLINE1A	L1	LINE	447	short	289	high	1987306	pericentromeric	1958	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16791723	16791852	AT1TE55525	.	-	ATTIRX1D	.	DNA	129	short	28	low	1987753	pericentromeric	2405	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16792056	16792439	AT1TE55530	.	-	BRODYAGA1A	MuDR	DNA	383	short	586	high	1988086	pericentromeric	2592	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16792440	16792495	AT1TE55535	.	+	ATREP3	Helitron	RC	55	tiny	1439	high	1988470	pericentromeric	2536	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16793591	16794406	AT1TE55540	.	+	ATMU6	MuDR	DNA	815	short	26	low	1989621	pericentromeric	625	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	16800123	16800152	AT1TE55550	.	+	HELITRONY1B	Helitron	RC	29	tiny	414	high	1996153	pericentromeric	92	no-CHH	no-CHH	.	.	.	.	.
Chr1	16800152	16800984	AT1TE55555	.	-	BRODYAGA2	MuDR	DNA	832	short	525	high	1996182	pericentromeric	121	no-CHH	no-CHH	.	.	.	.	.
Chr1	16801969	16802106	AT1TE55560	.	+	ATREP6	Helitron	RC	137	short	181	medium	1997999	pericentromeric	1938	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16802106	16802289	AT1TE55565	.	-	ATREP10B	Helitron	RC	183	short	491	high	1998136	pericentromeric	2075	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16802289	16802704	AT1TE55570	.	+	ATREP5	Helitron	RC	415	short	624	high	1998319	pericentromeric	2258	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16802704	16805441	AT1TE55575	.	+	ATREP5	Helitron	RC	2737	medium	624	high	1998734	pericentromeric	2673	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16805441	16805486	AT1TE55580	.	-	ARNOLDY2	MuDR	DNA	45	tiny	288	high	2001471	pericentromeric	2752	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16805486	16806150	AT1TE55585	.	-	ATREP3	Helitron	RC	664	short	1439	high	2001516	pericentromeric	2088	no-CHH	no-CHH	.	.	.	.	.
Chr1	16806150	16807920	AT1TE55590	.	+	ATREP3	Helitron	RC	1770	short	1439	high	2002180	pericentromeric	318	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16807920	16808021	AT1TE55595	.	+	ATREP3	Helitron	RC	101	short	1439	high	2003950	pericentromeric	217	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16808021	16808134	AT1TE55600	.	+	HELITRONY1E	Helitron	RC	113	short	447	high	2004051	pericentromeric	104	no-CHH	no-CHH	.	.	.	.	.
Chr1	16815506	16815678	AT1TE55620	.	-	HELITRONY1A	Helitron	RC	172	short	271	high	2011536	pericentromeric	773	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16818868	16820877	AT1TE55630	.	-	HELITRONY3	Helitron	RC	2009	medium	1399	high	2014898	pericentromeric	183	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	16820877	16820978	AT1TE55635	.	-	BRODYAGA2	MuDR	DNA	101	short	525	high	2016907	pericentromeric	82	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	16822034	16822305	AT1TE55640	.	+	ATREP10A	Helitron	RC	271	short	279	high	2018064	pericentromeric	278	no-CHH	no-CHH	.	.	.	.	.
Chr1	16822305	16822848	AT1TE55645	.	+	ATREP10D	Helitron	RC	543	short	1295	high	2018335	pericentromeric	549	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	16822857	16823159	AT1TE55650	.	+	HELITRONY3	Helitron	RC	302	short	1399	high	2018887	pericentromeric	1101	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16823828	16823973	AT1TE55655	.	-	ATREP3	Helitron	RC	145	short	1439	high	2019858	pericentromeric	2072	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	16823973	16824033	AT1TE55660	.	-	ATREP15	Helitron	RC	60	tiny	1003	high	2020003	pericentromeric	2217	no-CHH	no-CHH	.	.	.	.	.
Chr1	16824033	16824109	AT1TE55665	.	+	ATREP3	Helitron	RC	76	tiny	1439	high	2020063	pericentromeric	2277	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr1	16824109	16827463	AT1TE55670	.	+	ATREP3	Helitron	RC	3354	medium	1439	high	2020139	pericentromeric	2353	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16827473	16828789	AT1TE55675	.	-	ATREP10D	Helitron	RC	1316	short	1295	high	2023503	pericentromeric	2226	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16828789	16829209	AT1TE55680	.	+	ATREP4	Helitron	RC	420	short	832	high	2024819	pericentromeric	1806	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16829454	16829679	AT1TE55685	.	+	ATMU2	MuDR	DNA	225	short	64	medium	2025484	pericentromeric	1336	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16830433	16830632	AT1TE55690	.	-	ATMU2	MuDR	DNA	199	short	64	medium	2026463	pericentromeric	383	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16832853	16832889	AT1TE55695	.	-	BRODYAGA1A	MuDR	DNA	36	tiny	586	high	2028883	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	16832889	16833455	AT1TE55700	.	-	ATREP5	Helitron	RC	566	short	624	high	2028919	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	16838675	16838752	AT1TE55710	.	+	ATREP10D	Helitron	RC	77	tiny	1295	high	2034705	pericentromeric	474	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	16838752	16840185	AT1TE55715	.	-	ATREP10D	Helitron	RC	1433	short	1295	high	2034782	pericentromeric	551	no-CHH	no-CHH	.	.	.	.	.
Chr1	16840185	16840289	AT1TE55720	.	+	BRODYAGA2	MuDR	DNA	104	short	525	high	2036215	pericentromeric	1984	no-CHH	no-CHH	.	.	.	.	.
Chr1	16840587	16840608	AT1TE55725	.	+	ATREP15	Helitron	RC	21	tiny	1003	high	2036617	pericentromeric	2386	no-CHH	no-CHH	.	.	.	.	.
Chr1	16840608	16841432	AT1TE55730	.	-	VANDAL1N1	MuDR	DNA	824	short	52	medium	2036638	pericentromeric	2407	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16841432	16841498	AT1TE55735	.	-	VANDAL1N1	MuDR	DNA	66	tiny	52	medium	2037462	pericentromeric	3231	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	16841498	16841793	AT1TE55740	.	+	ATREP15	Helitron	RC	295	short	1003	high	2037528	pericentromeric	3297	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	16841959	16841984	AT1TE55745	.	-	VANDAL1N1	MuDR	DNA	25	tiny	52	medium	2037989	pericentromeric	3758	no-RdDM	no-CHH	.	.	.	.	.
Chr1	16841984	16842553	AT1TE55750	.	-	HELITRONY3	Helitron	RC	569	short	1399	high	2038014	pericentromeric	3783	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16842063	16842439	AT1TE55755	.	-	VANDAL1N1	MuDR	DNA	376	short	52	medium	2038093	pericentromeric	3862	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16842553	16842836	AT1TE55760	.	-	VANDAL2N1	MuDR	DNA	283	short	51	medium	2038583	pericentromeric	4352	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	16842836	16844613	AT1TE55765	.	-	VANDAL1N1	MuDR	DNA	1777	short	52	medium	2038866	pericentromeric	3167	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16846506	16846715	AT1TE55770	.	-	ATREP17	MuDR	DNA	209	short	34	low	2042536	pericentromeric	1065	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	16853282	16853328	AT1TE55790	.	-	ATCOPIA15	Copia	LTR	46	tiny	14	low	2049312	pericentromeric	44	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16853328	16858040	AT1TE55795	.	-	ATCOPIA4	Copia	LTR	4712	medium	11	low	2049358	pericentromeric	90	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16858044	16858518	AT1TE55800	.	-	ATREP10A	Helitron	RC	474	short	279	high	2054074	pericentromeric	4806	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	16858518	16859160	AT1TE55805	.	-	ATREP2A	Helitron	RC	642	short	116	medium	2054548	pericentromeric	5280	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16859160	16860639	AT1TE55810	.	-	ATREP10C	Helitron	RC	1479	short	123	medium	2055190	pericentromeric	4505	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16860639	16860666	AT1TE55815	.	+	ATREP10D	Helitron	RC	27	tiny	1295	high	2056669	pericentromeric	4478	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16860666	16860739	AT1TE55820	.	-	ATREP4	Helitron	RC	73	tiny	832	high	2056696	pericentromeric	4405	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16860739	16861107	AT1TE55825	.	+	HELITRONY3	Helitron	RC	368	short	1399	high	2056769	pericentromeric	4037	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16861343	16861615	AT1TE55830	.	+	ATREP3	Helitron	RC	272	short	1439	high	2057373	pericentromeric	3529	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16861615	16862168	AT1TE55835	.	+	ATREP10A	Helitron	RC	553	short	279	high	2057645	pericentromeric	2976	no-CHH	no-CHH	.	.	.	.	.
Chr1	16863429	16863455	AT1TE55840	.	-	ATREP10A	Helitron	RC	26	tiny	279	high	2059459	pericentromeric	1689	DCL3-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16863455	16865121	AT1TE55845	.	+	ATREP3	Helitron	RC	1666	short	1439	high	2059485	pericentromeric	23	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16866614	16867298	AT1TE55850	.	-	ATREP6	Helitron	RC	684	short	181	medium	2062644	pericentromeric	41	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16867761	16868961	AT1TE55855	.	+	ATHILA8A	Gypsy	LTR	1200	short	97	medium	2063791	pericentromeric	1188	PolIV-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	16868327	16868586	+	transcript_id-"456fabfd-2a3e-41b9-acbb-7645250af2ee|10"
Chr1	16872758	16872870	AT1TE55865	.	+	ATLINE1_4	L1	LINE	112	short	102	medium	2068788	pericentromeric	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	16876774	16876855	AT1TE55875	.	-	ATLINE1A	L1	LINE	81	tiny	289	high	2072804	pericentromeric	516	no-CHH	no-CHH	.	.	.	.	.
Chr1	16877044	16877543	AT1TE55880	.	-	ATREP10B	Helitron	RC	499	short	491	high	2073074	pericentromeric	786	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16877826	16877907	AT1TE55885	.	+	ATREP6	Helitron	RC	81	tiny	181	medium	2073856	pericentromeric	1568	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	16877907	16879338	AT1TE55890	.	-	ATREP10D	Helitron	RC	1431	short	1295	high	2073937	pericentromeric	1649	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16879338	16879926	AT1TE55895	.	+	ATREP10C	Helitron	RC	588	short	123	medium	2075368	pericentromeric	1964	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16879454	16879693	AT1TE55900	.	+	ATREP10D	Helitron	RC	239	short	1295	high	2075484	pericentromeric	2197	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16879926	16879955	AT1TE55905	.	+	ATREP10C	Helitron	RC	29	tiny	123	medium	2075956	pericentromeric	1935	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16882184	16882942	AT1TE55910	.	-	ATLINE1_3A	L1	LINE	758	short	160	medium	2078214	pericentromeric	51	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	16884465	16884909	AT1TE55915	.	-	BRODYAGA1A	MuDR	DNA	444	short	586	high	2080495	pericentromeric	2332	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	16885822	16887029	AT1TE55920	.	-	ATHILA8B	Gypsy	LTR	1207	short	78	medium	2081852	pericentromeric	374	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	16889133	16890972	AT1TE55925	.	-	ATREP11	Helitron	RC	1839	short	841	high	2085163	pericentromeric	0	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	16888204	16889281	+	transcript_id-"71cbd322-af0d-4aaf-9d06-227efc0d00b4|4"
Chr1	16892789	16892811	AT1TE55930	.	+	HELITRONY3	Helitron	RC	22	tiny	1399	high	2088819	pericentromeric	0	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16892811	16892895	AT1TE55935	.	-	ATREP1	Helitron	RC	84	tiny	498	high	2088841	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	16892895	16892922	AT1TE55940	.	+	HELITRONY1E	Helitron	RC	27	tiny	447	high	2088925	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	16892922	16893587	AT1TE55945	.	-	ATREP15	Helitron	RC	665	short	1003	high	2088952	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	16893587	16893612	AT1TE55950	.	+	HELITRONY3	Helitron	RC	25	tiny	1399	high	2089617	pericentromeric	0	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	16896031	16896642	AT1TE55955	.	-	ATREP10D	Helitron	RC	611	short	1295	high	2092061	pericentromeric	251	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16896642	16896900	AT1TE55960	.	+	ATREP15	Helitron	RC	258	short	1003	high	2092672	pericentromeric	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	16903159	16903430	AT1TE55980	.	+	ATREP3	Helitron	RC	271	short	1439	high	2099189	pericentromeric	4403	no-CHH	no-CHH	.	.	.	.	.
Chr1	16903430	16906912	AT1TE55985	.	+	ATREP3	Helitron	RC	3482	medium	1439	high	2099460	pericentromeric	921	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16923014	16923274	AT1TE56030	.	+	DT1	Mariner	DNA	260	short	123	medium	2119044	pericentromeric	346	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	16923274	16923355	AT1TE56035	.	+	BRODYAGA1A	MuDR	DNA	81	tiny	586	high	2119304	pericentromeric	265	no-CHH	no-CHH	.	.	.	.	.
Chr1	16925673	16926338	AT1TE56040	.	-	ARNOLDY2	MuDR	DNA	666	short	288	high	2121702	pericentromeric	12	.	.	LowExpressed	.	.	.	.
Chr1	16929214	16929461	AT1TE56045	.	+	ATDNA12T3_2	.	DNA	247	short	660	high	2125244	pericentromeric	860	no-CHH	no-CHH	.	.	.	.	.
Chr1	16929534	16929969	AT1TE56050	.	-	HELITRONY1A	Helitron	RC	435	short	271	high	2125564	pericentromeric	1180	no-CHH	no-CHH	.	.	.	.	.
Chr1	16929969	16930548	AT1TE56055	.	-	ATHPOGON1	Pogo	DNA	579	short	174	medium	2125999	pericentromeric	1615	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16930549	16930748	AT1TE56060	.	+	ATDNA12T3_2	.	DNA	199	short	660	high	2126579	pericentromeric	2195	no-CHH	no-CHH	.	.	.	.	.
Chr1	16931885	16931936	AT1TE56065	.	+	ATREP15	Helitron	RC	51	tiny	1003	high	2127915	pericentromeric	1855	no-CHH	no-CHH	.	.	.	.	.
Chr1	16931936	16932567	AT1TE56070	.	+	ATREP10B	Helitron	RC	631	short	491	high	2127966	pericentromeric	1224	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16932567	16932674	AT1TE56075	.	+	ATREP15	Helitron	RC	107	short	1003	high	2128597	pericentromeric	1117	no-CHH	no-CHH	.	.	.	.	.
Chr1	16935555	16935642	AT1TE56080	.	-	HELITRONY3	Helitron	RC	87	tiny	1399	high	2131585	pericentromeric	1128	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	16935642	16935740	AT1TE56085	.	+	ATREP11	Helitron	RC	98	tiny	841	high	2131672	pericentromeric	1215	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16935740	16936348	AT1TE56090	.	-	ATREP10D	Helitron	RC	608	short	1295	high	2131770	pericentromeric	1313	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16936348	16936428	AT1TE56095	.	-	HELITRONY3	Helitron	RC	80	tiny	1399	high	2132378	pericentromeric	1921	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	16936778	16936968	AT1TE56100	.	-	RathE1_cons	.	RathE1_cons	190	short	213	high	2132808	pericentromeric	2351	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16937847	16938113	AT1TE56105	.	-	ATREP10D	Helitron	RC	266	short	1295	high	2133877	pericentromeric	1795	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16938113	16939142	AT1TE56110	.	-	ATREP10D	Helitron	RC	1029	short	1295	high	2134143	pericentromeric	766	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16939142	16939241	AT1TE56115	.	+	ATREP15	Helitron	RC	99	tiny	1003	high	2135172	pericentromeric	667	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	16939241	16939447	AT1TE56120	.	+	RathE1_cons	.	RathE1_cons	206	short	213	high	2135271	pericentromeric	461	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	16942637	16942821	AT1TE56130	.	-	ATMUNX1	MuDR	DNA	184	short	155	medium	2138667	pericentromeric	300	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16942840	16962196	AT1TE56135	.	+	VANDAL4	MuDR	DNA	19356	long	102	medium	2138870	pericentromeric	503	no-RdDM	no-RdDM	ExpressedAndAnnotated	16952967	16953694	+	transcript_id-"35423a81-2a76-4f12-9450-c92c7b5c68f8|10"
Chr1	16953914	16957460	AT1TE56140	.	+	VANDAL4	MuDR	DNA	3546	medium	102	medium	2149944	pericentromeric	5897	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	16962198	16962405	AT1TE56150	.	-	ATMUNX1	MuDR	DNA	207	short	155	medium	2158228	pericentromeric	952	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16962405	16963162	AT1TE56155	.	+	ATREP4	Helitron	RC	757	short	832	high	2158435	pericentromeric	195	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16963162	16963204	AT1TE56160	.	-	ATREP3	Helitron	RC	42	tiny	1439	high	2159192	pericentromeric	153	no-CHH	no-CHH	.	.	.	.	.
Chr1	16965585	16965618	AT1TE56165	.	-	HELITRONY1C	Helitron	RC	33	tiny	120	medium	2161615	pericentromeric	767	no-CHH	no-CHH	.	.	.	.	.
Chr1	16965618	16968377	AT1TE56170	.	-	ATREP5	Helitron	RC	2759	medium	624	high	2161648	pericentromeric	800	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	16968377	16968465	AT1TE56175	.	-	ATREP5	Helitron	RC	88	tiny	624	high	2164407	pericentromeric	1825	no-CHH	no-CHH	.	.	.	.	.
Chr1	16968465	16968523	AT1TE56180	.	+	ATREP10D	Helitron	RC	58	tiny	1295	high	2164495	pericentromeric	1767	no-CHH	no-RdDM	.	.	.	.	.
Chr1	16969363	16969724	AT1TE56185	.	-	ATMUNX1	MuDR	DNA	361	short	155	medium	2165393	pericentromeric	566	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16974747	16974775	AT1TE56195	.	-	BRODYAGA1A	MuDR	DNA	28	tiny	586	high	2170777	pericentromeric	290	no-CHH	no-CHH	.	.	.	.	.
Chr1	16974775	16974797	AT1TE56200	.	+	BRODYAGA1A	MuDR	DNA	22	tiny	586	high	2170805	pericentromeric	318	no-CHH	no-RdDM	.	.	.	.	.
Chr1	16974797	16975428	AT1TE56205	.	+	ATMU7	MuDR	DNA	631	short	32	low	2170827	pericentromeric	340	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	16984449	16985111	AT1TE56230	.	+	BRODYAGA2	MuDR	DNA	662	short	525	high	2180479	pericentromeric	41	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	16985001	16985852	AT1TE56235	.	+	SADHU	.	Unassigned	851	short	16	low	2181031	pericentromeric	593	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16986004	16986041	AT1TE56240	.	-	SIMPLEGUY1	Harbinger	DNA	37	tiny	116	medium	2182034	pericentromeric	1596	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16986041	16987141	AT1TE56245	.	-	SIMPLEGUY1	Harbinger	DNA	1100	short	116	medium	2182071	pericentromeric	1633	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16987141	16987347	AT1TE56250	.	-	SIMPLEGUY1	Harbinger	DNA	206	short	116	medium	2183171	pericentromeric	2733	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16987615	16990441	AT1TE56255	.	+	ATREP5	Helitron	RC	2826	medium	624	high	2183645	pericentromeric	3207	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	16987715	16989955	AT1TE56260	.	+	ATREP5	Helitron	RC	2240	medium	624	high	2183745	pericentromeric	3307	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	16996075	16996195	AT1TE56280	.	-	TNAT1A	.	DNA	120	short	162	medium	2192105	pericentromeric	780	no-CHH	no-CHH	.	.	.	.	.
Chr1	16996195	16996543	AT1TE56285	.	+	ATHATN1	HAT	DNA	348	short	69	medium	2192225	pericentromeric	900	no-CHH	no-CHH	.	.	.	.	.
Chr1	16996653	16996973	AT1TE56290	.	-	ATHATN3	HAT	DNA	320	short	70	medium	2192683	pericentromeric	1358	no-CHH	no-CHH	.	.	.	.	.
Chr1	16997230	16997265	AT1TE56295	.	+	ATREP3	Helitron	RC	35	tiny	1439	high	2193260	pericentromeric	1935	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	16997265	16999391	AT1TE56300	.	-	ATREP3	Helitron	RC	2126	medium	1439	high	2193295	pericentromeric	184	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	16999391	16999476	AT1TE56305	.	-	ATREP3	Helitron	RC	85	tiny	1439	high	2195421	pericentromeric	99	no-CHH	no-CHH	.	.	.	.	.
Chr1	16999476	16999502	AT1TE56310	.	-	ATREP10D	Helitron	RC	26	tiny	1295	high	2195506	pericentromeric	73	no-CHH	no-CHH	.	.	.	.	.
Chr1	17003843	17004230	AT1TE56320	.	+	ATHPOGON1	Pogo	DNA	387	short	174	medium	2199873	pericentromeric	25	no-CHH	no-CHH	.	.	.	.	.
Chr1	17007881	17008244	AT1TE56330	.	-	ATENSPM10	En-Spm	DNA	363	short	81	medium	2203911	pericentromeric	73	no-CHH	no-CHH	.	.	.	.	.
Chr1	17008345	17008503	AT1TE56335	.	-	BRODYAGA1	MuDR	DNA	158	short	251	high	2204375	pericentromeric	537	no-CHH	no-CHH	.	.	.	.	.
Chr1	17011768	17012077	AT1TE56345	.	+	ATHPOGON3	Pogo	DNA	309	short	118	medium	2207798	pericentromeric	161	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	17015808	17015857	AT1TE56355	.	+	HELITRON2	Helitron	RC	49	tiny	194	medium	2211838	pericentromeric	405	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	17015857	17016880	AT1TE56360	.	+	ATREP4	Helitron	RC	1023	short	832	high	2211887	pericentromeric	454	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	17017021	17018618	AT1TE56365	.	+	VANDALNX1	MuDR	DNA	1597	short	14	low	2213051	pericentromeric	1618	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	17019634	17019761	AT1TE56370	.	-	TNAT2A	.	DNA	127	short	38	low	2215664	pericentromeric	1875	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	17021908	17021987	AT1TE56375	.	+	RathE2_cons	.	RathE2_cons	79	tiny	74	medium	2217938	pericentromeric	0	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	17022894	17023187	AT1TE56380	.	+	BRODYAGA1	MuDR	DNA	293	short	251	high	2218924	pericentromeric	280	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	17023248	17023915	AT1TE56385	.	-	ATLINE1_2	L1	LINE	667	short	41	low	2219278	pericentromeric	634	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	17023915	17029257	AT1TE56390	.	-	ATCOPIA79	Copia	LTR	5342	long	7	low	2219945	pericentromeric	1301	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	17024340,17024368,17024386	17029520,17029538,17030372	+,+,+	transcript_id-"580919f9-99ba-4b7b-9951-85224783a3b3|7",transcript_id-"483151de-35b9-4a8a-95a5-cd676e786b7f|14",transcript_id-"87365cc4-396a-46e5-967b-b0fdcf538eeb|5"
Chr1	17029260	17029605	AT1TE56395	.	-	TA12	L1	LINE	345	short	2	low	2225290	pericentromeric	1731	no-RdDM	no-RdDM	ExpressedAndAnnotated	17024340,17024368	17029520,17029538	+,+	transcript_id-"580919f9-99ba-4b7b-9951-85224783a3b3|7",transcript_id-"483151de-35b9-4a8a-95a5-cd676e786b7f|14"
Chr1	17029605	17030400	AT1TE56400	.	+	ATLINE1_1	L1	LINE	795	short	61	medium	2225635	pericentromeric	936	no-RdDM	no-RdDM	ExpressedAndAnnotated	17030075	17030309	+	transcript_id-"5dd5963c-da74-4cda-9b42-7a39ea1acd1a|3"
Chr1	17030832	17031256	AT1TE56405	.	+	ARNOLDY1	MuDR	DNA	424	short	237	high	2226862	pericentromeric	80	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	17031257	17031281	AT1TE56410	.	-	HELITRON4	Helitron	RC	25	tiny	199	medium	2227286	pericentromeric	55	.	.	LowExpressed	.	.	.	.
Chr1	17035032	17050039	AT1TE56420	.	+	VANDAL1	MuDR	DNA	15007	long	80	medium	2231062	pericentromeric	146	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	17044187	17043261	-	transcript_id-"9fa73ec4-21fe-45a9-a033-e239ff5df893|6"
Chr1	17035064	17050021	AT1TE56425	.	+	VANDAL1	MuDR	DNA	14957	long	80	medium	2231094	pericentromeric	178	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	17044187	17043261	-	transcript_id-"9fa73ec4-21fe-45a9-a033-e239ff5df893|6"
Chr1	17050125	17050571	AT1TE56430	.	-	BRODYAGA2	MuDR	DNA	446	short	525	high	2246155	pericentromeric	59	no-CHH	no-CHH	.	.	.	.	.
Chr1	17054874	17054925	AT1TE56440	.	+	ATCOPIA11	Copia	LTR	51	tiny	26	low	2250904	pericentromeric	328	no-CHH	no-CHH	.	.	.	.	.
Chr1	17054925	17060041	AT1TE56445	.	+	ATCOPIA1	Copia	LTR	5116	long	11	low	2250955	pericentromeric	379	no-CHH	no-CHH	ExpressedAndAnnotated	17055092,17059784	17057180,17059972	+,+	transcript_id-"3949b7d9-3c71-4725-b767-2276a0197d6a|4",transcript_id-"120fd0d1-143b-4a24-ae4d-b4f5fb57e2bb|11"
Chr1	17060056	17061024	AT1TE56450	.	-	ATREP10D	Helitron	RC	968	short	1295	high	2256086	pericentromeric	4422	no-CHH	no-CHH	.	.	.	.	.
Chr1	17061492	17062105	AT1TE56455	.	-	HELITRONY1B	Helitron	RC	613	short	414	high	2257522	pericentromeric	3341	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr1	17062891	17063244	AT1TE56460	.	+	BRODYAGA2	MuDR	DNA	353	short	525	high	2258921	pericentromeric	2202	no-CHH	no-CHH	.	.	.	.	.
Chr1	17063244	17063467	AT1TE56465	.	-	ATTIRTA1	Tc1	DNA	223	short	95	medium	2259274	pericentromeric	1979	no-CHH	no-CHH	.	.	.	.	.
Chr1	17063467	17063803	AT1TE56470	.	+	ATREP10D	Helitron	RC	336	short	1295	high	2259497	pericentromeric	1643	no-CHH	no-CHH	.	.	.	.	.
Chr1	17063803	17064402	AT1TE56475	.	-	HELITRONY1E	Helitron	RC	599	short	447	high	2259833	pericentromeric	1044	no-CHH	no-CHH	.	.	.	.	.
Chr1	17064419	17065248	AT1TE56480	.	+	ATHPOGON1	Pogo	DNA	829	short	174	medium	2260449	pericentromeric	198	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	17065248	17065277	AT1TE56485	.	-	HELITRONY3	Helitron	RC	29	tiny	1399	high	2261278	pericentromeric	169	no-CHH	no-RdDM	.	.	.	.	.
Chr1	17069722	17070185	AT1TE56495	.	-	BRODYAGA1A	MuDR	DNA	463	short	586	high	2265752	pericentromeric	612	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	17069791	17070028	AT1TE56500	.	-	ATDNATA1	Mariner	DNA	238	short	28	low	2265820	pericentromeric	680	.	.	.	.	.	.	.
Chr1	17071351	17074489	AT1TE56505	.	-	ATLINE1A	L1	LINE	3138	medium	289	high	2267381	pericentromeric	774	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	17074489	17074538	AT1TE56510	.	-	ATLINE1_6	L1	LINE	49	tiny	129	medium	2270519	pericentromeric	725	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	17076897	17077303	AT1TE56515	.	-	BOMZH1	MuDR	DNA	406	short	28	low	2272927	pericentromeric	311	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	17082531	17082963	AT1TE56525	.	-	HELITRONY1D	Helitron	RC	432	short	756	high	2278561	pericentromeric	201	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	17082964	17083160	AT1TE56530	.	-	ATSINE4	.	SINE	197	short	98	medium	2278993	pericentromeric	633	.	.	.	.	.	.	.
Chr1	17093642	17094313	AT1TE56560	.	-	ATREP15	Helitron	RC	671	short	1003	high	2289672	pericentromeric	1919	no-CHH	no-CHH	.	.	.	.	.
Chr1	17094314	17095350	AT1TE56565	.	+	TNAT1A	.	DNA	1037	short	162	medium	2290343	pericentromeric	882	.	.	.	.	.	.	.
Chr1	17101841	17101875	AT1TE56580	.	+	ATREP3	Helitron	RC	34	tiny	1439	high	2297871	pericentromeric	158	no-CHH	no-CHH	.	.	.	.	.
Chr1	17101875	17103933	AT1TE56585	.	+	ATREP10A	Helitron	RC	2058	medium	279	high	2297905	pericentromeric	192	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	17103933	17104169	AT1TE56590	.	-	ATREP10C	Helitron	RC	236	short	123	medium	2299963	pericentromeric	236	PolIV-and-RDR6-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	17104169	17104396	AT1TE56595	.	-	ATREP10D	Helitron	RC	227	short	1295	high	2300199	pericentromeric	9	no-CHH	no-CHH	.	.	.	.	.
Chr1	17104397	17104459	AT1TE56600	.	+	ATREP11	Helitron	RC	62	tiny	841	high	2300427	pericentromeric	0	no-CHH	no-RdDM	.	.	.	.	.
Chr1	17105104	17105490	AT1TE56605	.	-	ATREP5	Helitron	RC	386	short	624	high	2301134	pericentromeric	180	no-CHH	no-CHH	.	.	.	.	.
Chr1	17105490	17106207	AT1TE56610	.	+	ATHILA8A	Gypsy	LTR	717	short	97	medium	2301520	pericentromeric	566	no-CHH	no-CHH	.	.	.	.	.
Chr1	17107025	17107371	AT1TE56615	.	+	ATHILA8B	Gypsy	LTR	346	short	78	medium	2303055	pericentromeric	2101	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	17107371	17111523	AT1TE56620	.	+	ATREP15	Helitron	RC	4152	medium	1003	high	2303401	pericentromeric	2447	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	17111523	17111564	AT1TE56625	.	+	ATREP10A	Helitron	RC	41	tiny	279	high	2307553	pericentromeric	4479	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	17111564	17111638	AT1TE56630	.	-	ATREP15	Helitron	RC	74	tiny	1003	high	2307594	pericentromeric	4405	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	17112391	17112445	AT1TE56635	.	-	HELITRONY3	Helitron	RC	55	tiny	1399	high	2308420	pericentromeric	3598	.	.	LowExpressed	.	.	.	.
Chr1	17112446	17115304	AT1TE56640	.	-	ATREP11	Helitron	RC	2859	medium	841	high	2308475	pericentromeric	739	.	.	LowExpressed	.	.	.	.
Chr1	17115304	17115446	AT1TE56645	.	-	ATREP11	Helitron	RC	142	short	841	high	2311334	pericentromeric	597	no-RdDM	no-CHH	.	.	.	.	.
Chr1	17115446	17115702	AT1TE56650	.	-	ATREP11	Helitron	RC	256	short	841	high	2311476	pericentromeric	341	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	17115708	17115746	AT1TE56655	.	-	HELITRONY3	Helitron	RC	38	tiny	1399	high	2311738	pericentromeric	297	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	17115746	17115785	AT1TE56660	.	-	ATREP10D	Helitron	RC	39	tiny	1295	high	2311776	pericentromeric	258	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	17116652	17116793	AT1TE56665	.	+	ATTIRTA1	Tc1	DNA	141	short	95	medium	2312682	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	17120319	17120584	AT1TE56675	.	-	ATHAT3	HAT	DNA	265	short	23	low	2316349	pericentromeric	1243	no-CHH	no-CHH	.	.	.	.	.
Chr1	17122260	17122323	AT1TE56680	.	+	RathE1_cons	.	RathE1_cons	63	tiny	213	high	2318290	pericentromeric	1565	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	17122323	17122889	AT1TE56685	.	-	ATREP10B	Helitron	RC	566	short	491	high	2318353	pericentromeric	999	no-CHH	no-CHH	.	.	.	.	.
Chr1	17125290	17125539	AT1TE56690	.	+	HELITRONY1A	Helitron	RC	249	short	271	high	2321320	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	17125539	17126245	AT1TE56695	.	+	ATREP1	Helitron	RC	706	short	498	high	2321569	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	17126245	17126795	AT1TE56700	.	-	ATREP4	Helitron	RC	550	short	832	high	2322275	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	17128903	17129032	AT1TE56705	.	-	ATREP3	Helitron	RC	129	short	1439	high	2324933	pericentromeric	441	no-CHH	no-CHH	.	.	.	.	.
Chr1	17129032	17129094	AT1TE56710	.	+	BRODYAGA2	MuDR	DNA	62	tiny	525	high	2325062	pericentromeric	570	no-CHH	no-CHH	.	.	.	.	.
Chr1	17129094	17130009	AT1TE56715	.	+	ATREP6	Helitron	RC	915	short	181	medium	2325124	pericentromeric	632	no-CHH	no-CHH	.	.	.	.	.
Chr1	17133784	17133867	AT1TE56725	.	-	ATREP1	Helitron	RC	83	tiny	498	high	2329814	pericentromeric	236	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	17133867	17134707	AT1TE56730	.	+	ARNOLDY1	MuDR	DNA	840	short	237	high	2329897	pericentromeric	319	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	17136381	17136946	AT1TE56735	.	-	ATREP15	Helitron	RC	565	short	1003	high	2332411	pericentromeric	840	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	17136947	17137126	AT1TE56740	.	-	HELITRONY3	Helitron	RC	180	short	1399	high	2332976	pericentromeric	660	.	.	.	.	.	.	.
Chr1	17137127	17137663	AT1TE56745	.	-	BRODYAGA1	MuDR	DNA	537	short	251	high	2333156	pericentromeric	123	.	.	.	.	.	.	.
Chr1	17137664	17137785	AT1TE56750	.	+	ATREP15	Helitron	RC	122	short	1003	high	2333693	pericentromeric	1	.	.	.	.	.	.	.
Chr1	17138872	17139408	AT1TE56755	.	-	BRODYAGA1	MuDR	DNA	537	short	251	high	2334901	pericentromeric	123	.	.	.	.	.	.	.
Chr1	17139409	17139530	AT1TE56760	.	+	ATREP15	Helitron	RC	122	short	1003	high	2335438	pericentromeric	1	.	.	.	.	.	.	.
Chr1	17139893	17141150	AT1TE56765	.	-	ATREP3	Helitron	RC	1257	short	1439	high	2335923	pericentromeric	14	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	17141150	17141239	AT1TE56770	.	+	BRODYAGA1A	MuDR	DNA	89	tiny	586	high	2337180	pericentromeric	32	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	17141639	17142928	AT1TE56775	.	-	ATREP4	Helitron	RC	1289	short	832	high	2337669	pericentromeric	20	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	17142928	17142952	AT1TE56780	.	+	HELITRONY1B	Helitron	RC	24	tiny	414	high	2338958	pericentromeric	1309	no-CHH	no-CHH	.	.	.	.	.
Chr1	17143284	17143356	AT1TE56785	.	+	ATREP1	Helitron	RC	72	tiny	498	high	2339314	pericentromeric	1665	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	17143356	17143385	AT1TE56790	.	-	ATREP11	Helitron	RC	29	tiny	841	high	2339386	pericentromeric	1737	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	17143385	17144656	AT1TE56795	.	+	HELITRONY1E	Helitron	RC	1271	short	447	high	2339415	pericentromeric	1766	no-RdDM	no-CHH	.	.	.	.	.
Chr1	17144656	17144753	AT1TE56800	.	+	ATREP10B	Helitron	RC	97	tiny	491	high	2340686	pericentromeric	2304	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	17145079	17145454	AT1TE56805	.	+	ATENSPM8	En-Spm	DNA	375	short	11	low	2341109	pericentromeric	1603	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	17145568	17145611	AT1TE56810	.	-	ATENSPM2	En-Spm	DNA	43	tiny	114	medium	2341598	pericentromeric	1446	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	17145611	17145983	AT1TE56815	.	-	ATENSPM2	En-Spm	DNA	372	short	114	medium	2341641	pericentromeric	1074	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	17145983	17146108	AT1TE56820	.	-	ATENSPM2	En-Spm	DNA	125	short	114	medium	2342013	pericentromeric	949	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	17146108	17146765	AT1TE56825	.	+	ATREP3	Helitron	RC	657	short	1439	high	2342138	pericentromeric	292	no-CHH	no-CHH	.	.	.	.	.
Chr1	17151788	17152908	AT1TE56835	.	+	BRODYAGA1A	MuDR	DNA	1120	short	586	high	2347818	pericentromeric	47	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	17167999	17168879	AT1TE56880	.	+	ATREP10D	Helitron	RC	880	short	1295	high	2364029	pericentromeric	584	no-CHH	no-CHH	.	.	.	.	.
Chr1	17176908	17177023	AT1TE56910	.	-	VANDAL7	MuDR	DNA	115	short	36	low	2372938	pericentromeric	225	no-CHH	no-CHH	.	.	.	.	.
Chr1	17186922	17187271	AT1TE56940	.	-	ATTIRX1D	.	DNA	349	short	28	low	2382952	pericentromeric	388	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	17187625	17188028	AT1TE56945	.	-	ATIS112A	Harbinger	DNA	403	short	173	medium	2383655	pericentromeric	1091	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	17188285	17188413	AT1TE56950	.	+	SIMPLEGUY1	Harbinger	DNA	128	short	116	medium	2384315	pericentromeric	1751	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	17189243	17190198	AT1TE56955	.	+	ATREP11	Helitron	RC	955	short	841	high	2385273	pericentromeric	1303	no-CHH	no-CHH	.	.	.	.	.
Chr1	17190198	17190286	AT1TE56960	.	+	HELITRONY1A	Helitron	RC	88	tiny	271	high	2386228	pericentromeric	1215	no-CHH	no-CHH	.	.	.	.	.
Chr1	17193651	17194071	AT1TE56970	.	-	BRODYAGA2	MuDR	DNA	420	short	525	high	2389681	pericentromeric	781	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	17194071	17194987	AT1TE56975	.	+	TAG2	HAT	DNA	916	short	86	medium	2390101	pericentromeric	1201	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	17195011	17195111	AT1TE56980	.	+	ATHAT1	HAT	DNA	100	short	105	medium	2391041	pericentromeric	2141	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	17195772	17196166	AT1TE56985	.	-	BRODYAGA2	MuDR	DNA	394	short	525	high	2391802	pericentromeric	2902	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	17196166	17197459	AT1TE56990	.	+	ATHAT1	HAT	DNA	1293	short	105	medium	2392196	pericentromeric	1911	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	17197611	17197724	AT1TE56995	.	+	HELITRONY3	Helitron	RC	113	short	1399	high	2393641	pericentromeric	1646	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	17197820	17197894	AT1TE57000	.	+	ATREP10	Helitron	RC	74	tiny	63	medium	2393850	pericentromeric	1476	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	17200976	17201083	AT1TE57010	.	-	ATHATN10	HAT	DNA	107	short	48	low	2397006	pericentromeric	296	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	17201387	17202175	AT1TE57015	.	+	ATCOPIA78	Copia	LTR	788	short	24	low	2397417	pericentromeric	707	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	17201570	17201916	AT1TE57020	.	-	ATSINE4	.	SINE	346	short	98	medium	2397600	pericentromeric	890	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	17203925	17206318	AT1TE57025	.	+	ATCOPIA63	Copia	LTR	2393	medium	11	low	2399955	pericentromeric	3245	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr1	17209919	17210512	AT1TE57035	.	-	ATREP11	Helitron	RC	593	short	841	high	2405949	pericentromeric	9239	no-CHH	no-CHH	.	.	.	.	.
Chr1	17213315	17213731	AT1TE57040	.	+	TAG2	HAT	DNA	416	short	86	medium	2409345	pericentromeric	11172	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	17214214	17215150	AT1TE57045	.	+	TAG2	HAT	DNA	936	short	86	medium	2410244	pericentromeric	9753	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	17214882	17214939	AT1TE57050	.	+	ATHAT1	HAT	DNA	57	tiny	105	medium	2410912	pericentromeric	9964	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	17215150	17215220	AT1TE57055	.	+	TAG2	HAT	DNA	70	tiny	86	medium	2411180	pericentromeric	9683	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	17215220	17216165	AT1TE57060	.	+	TAG2	HAT	DNA	945	short	86	medium	2411250	pericentromeric	8738	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	17216165	17216206	AT1TE57065	.	+	ATHAT1	HAT	DNA	41	tiny	105	medium	2412195	pericentromeric	8697	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	17216534	17217243	AT1TE57070	.	+	ATHAT1	HAT	DNA	709	short	105	medium	2412564	pericentromeric	7660	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	17217243	17217311	AT1TE57075	.	+	TAG2	HAT	DNA	68	tiny	86	medium	2413273	pericentromeric	7592	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	17218268	17218450	AT1TE57080	.	-	ATCOPIA57	Copia	LTR	182	short	48	low	2414298	pericentromeric	6453	no-CHH	no-CHH	.	.	.	.	.
Chr1	17218450	17218502	AT1TE57085	.	-	ATCOPIA57	Copia	LTR	52	tiny	48	low	2414480	pericentromeric	6401	no-CHH	no-CHH	.	.	.	.	.
Chr1	17229159	17229303	AT1TE57120	.	-	RathE1_cons	.	RathE1_cons	144	short	213	high	2425189	pericentromeric	1107	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	17230041	17230457	AT1TE57125	.	-	HELITRONY3	Helitron	RC	416	short	1399	high	2426071	pericentromeric	0	no-RdDM	no-CHH	.	.	.	.	.
Chr1	17239520	17239651	AT1TE57150	.	+	BRODYAGA1A	MuDR	DNA	131	short	586	high	2435550	pericentromeric	1567	no-CHH	no-CHH	.	.	.	.	.
Chr1	17239651	17239902	AT1TE57155	.	-	ATDNATA1	Mariner	DNA	251	short	28	low	2435681	pericentromeric	1698	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr1	17240900	17241909	AT1TE57160	.	+	HELITRONY1E	Helitron	RC	1009	short	447	high	2436930	pericentromeric	2947	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	17241909	17241935	AT1TE57165	.	+	ATREP1	Helitron	RC	26	tiny	498	high	2437939	pericentromeric	3956	no-CHH	no-CHH	.	.	.	.	.
Chr1	17241935	17241972	AT1TE57170	.	-	ATREP3	Helitron	RC	37	tiny	1439	high	2437965	pericentromeric	3982	no-CHH	no-CHH	.	.	.	.	.
Chr1	17243084	17244472	AT1TE57175	.	-	ATREP3	Helitron	RC	1388	short	1439	high	2439114	pericentromeric	5131	no-CHH	no-CHH	.	.	.	.	.
Chr1	17245809	17246136	AT1TE57180	.	-	ATREP4	Helitron	RC	327	short	832	high	2441839	pericentromeric	7856	no-CHH	no-CHH	.	.	.	.	.
Chr1	17246136	17246184	AT1TE57185	.	-	BRODYAGA1A	MuDR	DNA	48	tiny	586	high	2442166	pericentromeric	8183	no-CHH	no-RdDM	.	.	.	.	.
Chr1	17246184	17247014	AT1TE57190	.	-	HELITRONY1D	Helitron	RC	830	short	756	high	2442214	pericentromeric	8231	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	17247684	17247719	AT1TE57195	.	-	ATCOPIA38B	Copia	LTR	35	tiny	5	low	2443714	pericentromeric	9731	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	17247719	17252579	AT1TE57200	.	-	ATCOPIA75	Copia	LTR	4860	medium	20	low	2443749	pericentromeric	9280	no-CHH	no-CHH	.	.	.	.	.
Chr1	17252652	17252806	AT1TE57205	.	+	ATGP1	Gypsy	LTR	154	short	144	medium	2448682	pericentromeric	9053	no-CHH	no-CHH	.	.	.	.	.
Chr1	17254022	17254893	AT1TE57210	.	-	HELITRONY3A	Helitron	RC	871	short	49	low	2450052	pericentromeric	6966	no-RdDM	no-CHH	.	.	.	.	.
Chr1	17257391	17257526	AT1TE57215	.	+	ATLANTYS1	Gypsy	LTR	135	short	153	medium	2453421	pericentromeric	4333	no-RdDM	no-CHH	.	.	.	.	.
Chr1	17257526	17261439	AT1TE57220	.	+	ATLANTYS1	Gypsy	LTR	3913	medium	153	medium	2453556	pericentromeric	420	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	17261439	17261807	AT1TE57225	.	+	ATLANTYS1	Gypsy	LTR	368	short	153	medium	2457469	pericentromeric	52	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	17267054	17268180	AT1TE57235	.	+	SIMPLEHAT1	HAT	DNA	1126	short	56	medium	2463084	pericentromeric	547	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	17269522	17269961	AT1TE57240	.	+	ATREP10A	Helitron	RC	439	short	279	high	2465552	pericentromeric	223	no-CHH	no-CHH	.	.	.	.	.
Chr1	17277986	17278211	AT1TE57270	.	-	ATMUNX1	MuDR	DNA	225	short	155	medium	2474016	pericentromeric	327	no-CHH	no-CHH	.	.	.	.	.
Chr1	17278211	17278277	AT1TE57275	.	-	ATMUNX1	MuDR	DNA	66	tiny	155	medium	2474241	pericentromeric	552	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	17279563	17279719	AT1TE57280	.	+	ATDNAI27T9C	MuDR	DNA	156	short	108	medium	2475593	pericentromeric	1904	no-RdDM	no-CHH	.	.	.	.	.
Chr1	17285710	17286573	AT1TE57290	.	+	ATREP15	Helitron	RC	863	short	1003	high	2481740	pericentromeric	101	no-CHH	no-CHH	.	.	.	.	.
Chr1	17290068	17290814	AT1TE57300	.	-	ATHATN3	HAT	DNA	746	short	70	medium	2486098	pericentromeric	4459	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	17291615	17292286	AT1TE57305	.	-	ATREP4	Helitron	RC	671	short	832	high	2487645	pericentromeric	5894	no-CHH	no-CHH	.	.	.	.	.
Chr1	17293309	17293444	AT1TE57310	.	-	RathE1_cons	.	RathE1_cons	135	short	213	high	2489339	pericentromeric	4736	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	17295328	17295546	AT1TE57315	.	-	RP1_AT	.	DNA	218	short	87	medium	2491358	pericentromeric	2634	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	17298840	17299241	AT1TE57325	.	-	BRODYAGA1A	MuDR	DNA	401	short	586	high	2494870	pericentromeric	117	no-CHH	no-CHH	.	.	.	.	.
Chr1	17300097	17300317	AT1TE57330	.	+	TSCL	.	LINE?	220	short	81	medium	2496127	pericentromeric	718	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	17300317	17300703	AT1TE57335	.	-	ATREP10B	Helitron	RC	386	short	491	high	2496347	pericentromeric	332	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr1	17315440	17315703	AT1TE57380	.	-	VANDAL13	MuDR	DNA	263	short	38	low	2511470	pericentromeric	3516	no-RdDM	no-CHH	.	.	.	.	.
Chr1	17316649	17316856	AT1TE57385	.	-	VANDAL13	MuDR	DNA	207	short	38	low	2512679	pericentromeric	2363	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	17317622	17317733	AT1TE57390	.	-	VANDAL14	MuDR	DNA	111	short	25	low	2513652	pericentromeric	1486	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	17317733	17318172	AT1TE57395	.	-	ATREP11	Helitron	RC	439	short	841	high	2513763	pericentromeric	1047	no-RdDM	no-CHH	.	.	.	.	.
Chr1	17318751	17319057	AT1TE57400	.	+	ATREP11	Helitron	RC	306	short	841	high	2514781	pericentromeric	162	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	17322984	17323059	AT1TE57410	.	-	LIMPET1	MuDR	DNA	75	tiny	116	medium	2519014	pericentromeric	0	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	17326188	17326510	AT1TE57420	.	+	ATREP3	Helitron	RC	322	short	1439	high	2522218	pericentromeric	317	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	17332293	17332445	AT1TE57430	.	-	HELITRONY1B	Helitron	RC	152	short	414	high	2528323	pericentromeric	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	17332445	17332479	AT1TE57435	.	-	ATREP11	Helitron	RC	34	tiny	841	high	2528475	pericentromeric	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	17332479	17333420	AT1TE57440	.	-	ATREP11	Helitron	RC	941	short	841	high	2528509	pericentromeric	0	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	17333421	17333962	AT1TE57445	.	-	ATREP4	Helitron	RC	542	short	832	high	2529450	pericentromeric	0	.	.	.	.	.	.	.
Chr1	17340981	17341706	AT1TE57460	.	+	ATREP11	Helitron	RC	725	short	841	high	2537011	pericentromeric	9	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	17345101	17345186	AT1TE57470	.	-	ATREP4	Helitron	RC	85	tiny	832	high	2541131	pericentromeric	483	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	17345669	17345759	AT1TE57475	.	+	ATREP15	Helitron	RC	90	tiny	1003	high	2541699	pericentromeric	1051	no-CHH	no-CHH	.	.	.	.	.
Chr1	17345759	17346935	AT1TE57480	.	+	HELITRONY3	Helitron	RC	1176	short	1399	high	2541789	pericentromeric	158	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	17346435	17346908	AT1TE57485	.	-	ATTIR16T3A	.	DNA	473	short	106	medium	2542465	pericentromeric	185	no-CHH	no-CHH	.	.	.	.	.
Chr1	17346935	17346983	AT1TE57490	.	+	ATREP3	Helitron	RC	48	tiny	1439	high	2542965	pericentromeric	110	no-CHH	no-CHH	.	.	.	.	.
Chr1	17347431	17347882	AT1TE57495	.	-	ATDNA2T9C	MuDR	DNA	451	short	242	high	2543461	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	17349653	17350231	AT1TE57500	.	+	ATLINE1_1	L1	LINE	578	short	61	medium	2545683	pericentromeric	917	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	17360725	17365910	AT1TE57530	.	+	ATCOPIA49	Copia	LTR	5185	long	34	low	2556755	pericentromeric	0	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	17370029	17370217	AT1TE57540	.	-	ATENSPM8	En-Spm	DNA	188	short	11	low	2566059	pericentromeric	1326	no-CHH	no-CHH	.	.	.	.	.
Chr1	17376312	17378567	AT1TE57560	.	-	ATREP15	Helitron	RC	2255	medium	1003	high	2572342	pericentromeric	84	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	17381433	17381809	AT1TE57565	.	-	ATHATN2	HAT	DNA	376	short	46	low	2577463	pericentromeric	777	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	17384368	17384486	AT1TE57570	.	+	RathE1_cons	.	RathE1_cons	118	short	213	high	2580398	pericentromeric	1099	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	17386593	17386866	AT1TE57575	.	-	ATENSPM5	En-Spm	DNA	273	short	111	medium	2582623	pericentromeric	623	no-CHH	no-CHH	.	.	.	.	.
Chr1	17390116	17390827	AT1TE57585	.	+	ATLINEIII	L1	LINE	711	short	196	medium	2586146	pericentromeric	3990	no-CHH	no-CHH	.	.	.	.	.
Chr1	17392183	17392257	AT1TE57590	.	-	RathE2_cons	.	RathE2_cons	74	tiny	74	medium	2588213	pericentromeric	2560	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	17398106	17398165	AT1TE57600	.	+	ATREP6	Helitron	RC	59	tiny	181	medium	2594136	pericentromeric	930	no-CHH	no-CHH	.	.	.	.	.
Chr1	17398170	17398192	AT1TE57605	.	+	BRODYAGA1A	MuDR	DNA	22	tiny	586	high	2594200	pericentromeric	994	no-CHH	no-CHH	.	.	.	.	.
Chr1	17398192	17399151	AT1TE57610	.	-	ATREP11	Helitron	RC	959	short	841	high	2594222	pericentromeric	1016	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	17399151	17399218	AT1TE57615	.	-	ATREP1	Helitron	RC	67	tiny	498	high	2595181	pericentromeric	1975	no-CHH	no-CHH	.	.	.	.	.
Chr1	17399523	17400835	AT1TE57620	.	+	ATLINEIII	L1	LINE	1312	short	196	medium	2595553	pericentromeric	1848	no-CHH	no-CHH	.	.	.	.	.
Chr1	17404315	17404744	AT1TE57630	.	+	ATLANTYS3	Gypsy	LTR	429	short	142	medium	2600345	pericentromeric	1122	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	17404744	17406246	AT1TE57635	.	-	ATREP10A	Helitron	RC	1502	short	279	high	2600774	pericentromeric	1551	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	17404787	17406194	AT1TE57640	.	-	ATREP10A	Helitron	RC	1407	short	279	high	2600817	pericentromeric	1594	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	17406246	17406282	AT1TE57645	.	-	HELITRONY1D	Helitron	RC	36	tiny	756	high	2602276	pericentromeric	3053	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr1	17406452	17406544	AT1TE57650	.	-	ATHILA4C	Gypsy	LTR	92	tiny	206	high	2602482	pericentromeric	3259	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	17406544	17409066	AT1TE57655	.	-	ATHILA4	Gypsy	LTR	2522	medium	250	high	2602574	pericentromeric	3351	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	17409085	17409116	AT1TE57660	.	-	ATHILA4C	Gypsy	LTR	31	tiny	206	high	2605115	pericentromeric	5494	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	17409422	17409571	AT1TE57665	.	+	ATLANTYS3	Gypsy	LTR	149	short	142	medium	2605452	pericentromeric	5039	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	17410113	17410345	AT1TE57670	.	-	SIMPLEGUY1	Harbinger	DNA	232	short	116	medium	2606143	pericentromeric	4265	no-RdDM	no-CHH	.	.	.	.	.
Chr1	17410345	17410971	AT1TE57675	.	-	SIMPLEGUY1	Harbinger	DNA	626	short	116	medium	2606375	pericentromeric	3639	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	17410971	17411288	AT1TE57680	.	-	VANDAL3	MuDR	DNA	317	short	177	medium	2607001	pericentromeric	3322	no-CHH	no-RdDM	.	.	.	.	.
Chr1	17411462	17411887	AT1TE57685	.	-	VANDAL3	MuDR	DNA	425	short	177	medium	2607492	pericentromeric	2723	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	17411887	17411942	AT1TE57690	.	-	VANDAL3	MuDR	DNA	55	tiny	177	medium	2607917	pericentromeric	2668	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	17411985	17413128	AT1TE57695	.	-	VANDAL3	MuDR	DNA	1143	short	177	medium	2608015	pericentromeric	1482	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	17413146	17413305	AT1TE57700	.	+	TAG2	HAT	DNA	159	short	86	medium	2609176	pericentromeric	1305	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	17413906	17414210	AT1TE57705	.	+	ATLINEIII	L1	LINE	304	short	196	medium	2609936	pericentromeric	400	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	17415477	17416206	AT1TE57710	.	+	TAG3N1	HAT	DNA	729	short	97	medium	2611507	pericentromeric	345	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	17416584	17416984	AT1TE57715	.	+	ATMUNX1	MuDR	DNA	400	short	155	medium	2612614	pericentromeric	638	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	17421325	17421483	AT1TE57725	.	-	BRODYAGA2	MuDR	DNA	158	short	525	high	2617355	pericentromeric	1080	no-CHH	no-CHH	.	.	.	.	.
Chr1	17421483	17422153	AT1TE57730	.	-	ATREP11	Helitron	RC	670	short	841	high	2617513	pericentromeric	410	no-CHH	no-CHH	.	.	.	.	.
Chr1	17428421	17428744	AT1TE57750	.	-	ATCOPIA57	Copia	LTR	323	short	48	low	2624451	pericentromeric	200	no-CHH	no-CHH	.	.	.	.	.
Chr1	17430050	17430283	AT1TE57755	.	-	ATCOPIA57	Copia	LTR	233	short	48	low	2626080	pericentromeric	237	no-CHH	no-CHH	.	.	.	.	.
Chr1	17430283	17430317	AT1TE57760	.	-	ATCOPIA57	Copia	LTR	34	tiny	48	low	2626313	pericentromeric	470	no-CHH	no-CHH	.	.	.	.	.
Chr1	17430671	17430717	AT1TE57765	.	+	HELITRONY1D	Helitron	RC	46	tiny	756	high	2626701	pericentromeric	320	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	17430821	17432230	AT1TE57770	.	+	HELITRONY1D	Helitron	RC	1409	short	756	high	2626851	pericentromeric	0	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	17431734	17431783	AT1TE57775	.	+	HELITRONY1A	Helitron	RC	49	tiny	271	high	2627764	pericentromeric	280	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	17438812	17439704	AT1TE57790	.	+	BRODYAGA1A	MuDR	DNA	892	short	586	high	2634842	pericentromeric	516	no-CHH	no-CHH	.	.	.	.	.
Chr1	17439704	17439899	AT1TE57795	.	-	HELITRONY3	Helitron	RC	195	short	1399	high	2635734	pericentromeric	1408	no-CHH	no-CHH	.	.	.	.	.
Chr1	17443084	17446790	AT1TE57805	.	+	ATCOPIA15	Copia	LTR	3706	medium	14	low	2639114	pericentromeric	4788	no-CHH	no-CHH	ExpressedAndAnnotated	17443232	17444165	+	transcript_id-"6db1df81-afbd-4155-9805-c25e0cbe5c2f|8"
Chr1	17447737	17447859	AT1TE57810	.	-	HELITRONY3	Helitron	RC	122	short	1399	high	2643767	pericentromeric	3864	no-CHH	no-CHH	.	.	.	.	.
Chr1	17447859	17448067	AT1TE57815	.	-	HELITRONY3	Helitron	RC	208	short	1399	high	2643889	pericentromeric	3656	no-CHH	no-RdDM	.	.	.	.	.
Chr1	17448067	17449699	AT1TE57820	.	-	ARNOLDY2	MuDR	DNA	1632	short	288	high	2644097	pericentromeric	2024	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	17449699	17449888	AT1TE57825	.	-	ARNOLDY2	MuDR	DNA	189	short	288	high	2645729	pericentromeric	1835	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	17449889	17449915	AT1TE57830	.	-	ARNOLDY2	MuDR	DNA	27	tiny	288	high	2645918	pericentromeric	1808	.	.	.	.	.	.	.
Chr1	17449915	17449980	AT1TE57835	.	+	ARNOLD4	MuDR	DNA	65	tiny	23	low	2645945	pericentromeric	1743	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	17454604	17455441	AT1TE57845	.	+	ATENSPM2	En-Spm	DNA	837	short	114	medium	2650634	pericentromeric	260	no-CHH	no-CHH	.	.	.	.	.
Chr1	17457008	17457043	AT1TE57850	.	-	ATHATN1	HAT	DNA	35	tiny	69	medium	2653038	pericentromeric	127	no-CHH	no-CHH	.	.	.	.	.
Chr1	17465295	17465429	AT1TE57880	.	+	META1	Copia	LTR	134	short	138	medium	2661325	pericentromeric	1321	no-CHH	no-CHH	.	.	.	.	.
Chr1	17465433	17466502	AT1TE57885	.	+	HELITRONY1B	Helitron	RC	1069	short	414	high	2661463	pericentromeric	248	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	17466521	17466624	AT1TE57890	.	+	ATREP11	Helitron	RC	103	short	841	high	2662551	pericentromeric	126	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	17473769	17474223	AT1TE57910	.	+	ATGP3	Gypsy	LTR	454	short	60	medium	2669799	pericentromeric	579	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	17474227	17475214	AT1TE57915	.	+	ATGP9B	Gypsy	LTR	987	short	27	low	2670257	pericentromeric	1037	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	17475325	17475376	AT1TE57920	.	+	ATGP9B	Gypsy	LTR	51	tiny	27	low	2671355	pericentromeric	2135	no-CHH	no-CHH	.	.	.	.	.
Chr1	17477614	17477755	AT1TE57925	.	+	ATSINE2A	.	SINE	141	short	33	low	2673644	pericentromeric	1163	no-CHH	no-CHH	.	.	.	.	.
Chr1	17488937	17489152	AT1TE57960	.	-	ATIS112A	Harbinger	DNA	215	short	173	medium	2684967	pericentromeric	2550	no-CHH	no-CHH	ExpressedAndAnnotated	17490171	17489038	-	transcript_id-"d5c09540-4415-4c66-b96b-15809bfd6b8c|5"
Chr1	17495922	17496021	AT1TE57980	.	+	VANDAL20	MuDR	DNA	99	tiny	51	medium	2691952	pericentromeric	817	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	17498435	17498496	AT1TE57985	.	-	ATHILA6A	Gypsy	LTR	61	tiny	247	high	2694465	pericentromeric	325	no-CHH	no-CHH	.	.	.	.	.
Chr1	17499444	17500030	AT1TE57990	.	-	BRODYAGA1	MuDR	DNA	586	short	251	high	2695474	pericentromeric	1334	no-CHH	no-CHH	.	.	.	.	.
Chr1	17502209	17502231	AT1TE57995	.	+	ATREP2	Helitron	RC	22	tiny	164	medium	2698239	pericentromeric	2604	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	17502231	17502943	AT1TE58000	.	+	ATREP2	Helitron	RC	712	short	164	medium	2698261	pericentromeric	1892	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	17502943	17503720	AT1TE58005	.	-	ATLINE1_2	L1	LINE	777	short	41	low	2698973	pericentromeric	1115	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	17511497	17512296	AT1TE58030	.	-	ATREP15	Helitron	RC	799	short	1003	high	2707527	pericentromeric	1819	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr1	17512296	17512903	AT1TE58035	.	+	ATREP4	Helitron	RC	607	short	832	high	2708326	pericentromeric	2618	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	17512903	17513068	AT1TE58040	.	+	HELITRONY3	Helitron	RC	165	short	1399	high	2708933	pericentromeric	3225	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	17513068	17513191	AT1TE58045	.	-	ATREP10D	Helitron	RC	123	short	1295	high	2709098	pericentromeric	3390	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	17513191	17515002	AT1TE58050	.	+	ATREP10D	Helitron	RC	1811	short	1295	high	2709221	pericentromeric	3406	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	17515021	17515483	AT1TE58055	.	+	VANDAL5A	MuDR	DNA	462	short	56	medium	2711051	pericentromeric	2925	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	17515483	17515727	AT1TE58060	.	+	ATDNA1T9A	MuDR	DNA	244	short	36	low	2711513	pericentromeric	2681	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	17516122	17516267	AT1TE58065	.	+	ATDNAI27T9B	MuDR	DNA	145	short	43	low	2712152	pericentromeric	2141	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	17520594	17525126	AT1TE58075	.	+	ATCOPIA38A	Copia	LTR	4532	medium	2	low	2716624	pericentromeric	310	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr1	17525126	17525254	AT1TE58080	.	+	ATCOPIA15	Copia	LTR	128	short	14	low	2721156	pericentromeric	182	PolIV-and-RDR6-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	17532165	17532763	AT1TE58100	.	-	ATLANTYS3	Gypsy	LTR	598	short	142	medium	2728195	pericentromeric	1177	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	17533773	17534050	AT1TE58105	.	+	VANDAL6	MuDR	DNA	277	short	89	medium	2729803	pericentromeric	0	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	17541628	17541723	AT1TE58120	.	-	HELITRONY1B	Helitron	RC	95	tiny	414	high	2737658	pericentromeric	539	no-CHH	no-RdDM	.	.	.	.	.
Chr1	17541723	17542762	AT1TE58125	.	-	ATREP15	Helitron	RC	1039	short	1003	high	2737753	pericentromeric	634	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	17542762	17543114	AT1TE58130	.	+	ATREP11	Helitron	RC	352	short	841	high	2738792	pericentromeric	964	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	17543114	17543148	AT1TE58135	.	+	ATREP10D	Helitron	RC	34	tiny	1295	high	2739144	pericentromeric	930	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	17544482	17544627	AT1TE58140	.	+	ATCOPIA36	Copia	LTR	145	short	14	low	2740512	pericentromeric	251	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	17544844	17544872	AT1TE58145	.	-	ATREP10B	Helitron	RC	28	tiny	491	high	2740874	pericentromeric	613	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	17544872	17544935	AT1TE58150	.	-	ATREP1	Helitron	RC	63	tiny	498	high	2740902	pericentromeric	641	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	17544935	17546348	AT1TE58155	.	+	HELITRONY1B	Helitron	RC	1413	short	414	high	2740965	pericentromeric	704	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	17546349	17546387	AT1TE58160	.	+	ATREP3	Helitron	RC	39	tiny	1439	high	2742378	pericentromeric	937	.	.	.	.	.	.	.
Chr1	17547727	17547872	AT1TE58165	.	+	ATCOPIA36	Copia	LTR	145	short	14	low	2743757	pericentromeric	250	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	17548058	17548115	AT1TE58170	.	+	HELITRONY1E	Helitron	RC	57	tiny	447	high	2744088	pericentromeric	581	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr1	17548115	17548183	AT1TE58175	.	-	HELITRONY3	Helitron	RC	68	tiny	1399	high	2744145	pericentromeric	638	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr1	17548183	17549180	AT1TE58180	.	+	ATREP10B	Helitron	RC	997	short	491	high	2744213	pericentromeric	706	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	17550961	17551066	AT1TE58185	.	-	ATREP4	Helitron	RC	105	short	832	high	2746991	pericentromeric	3484	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	17551066	17551125	AT1TE58190	.	-	BRODYAGA1	MuDR	DNA	59	tiny	251	high	2747096	pericentromeric	3589	no-RdDM	no-CHH	.	.	.	.	.
Chr1	17551125	17553241	AT1TE58195	.	-	ATREP3	Helitron	RC	2116	medium	1439	high	2747155	pericentromeric	3648	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	17551441	17551559	AT1TE58200	.	-	ATREP1	Helitron	RC	118	short	498	high	2747471	pericentromeric	3964	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	17551559	17552174	AT1TE58205	.	+	ATHATN7	HAT	DNA	615	short	71	medium	2747589	pericentromeric	4082	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	17553241	17554137	AT1TE58210	.	+	ATREP11	Helitron	RC	896	short	841	high	2749271	pericentromeric	4133	no-CHH	no-CHH	.	.	.	.	.
Chr1	17554137	17554320	AT1TE58215	.	-	HELITRONY1E	Helitron	RC	183	short	447	high	2750167	pericentromeric	3950	no-CHH	no-CHH	.	.	.	.	.
Chr1	17554320	17554346	AT1TE58220	.	+	ATREP4	Helitron	RC	26	tiny	832	high	2750350	pericentromeric	3924	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr1	17554346	17554366	AT1TE58225	.	+	ATREP10D	Helitron	RC	20	tiny	1295	high	2750376	pericentromeric	3904	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr1	17554786	17555068	AT1TE58230	.	+	ATHATN3	HAT	DNA	282	short	70	medium	2750816	pericentromeric	3202	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	17555108	17555179	AT1TE58235	.	+	ATREP4	Helitron	RC	71	tiny	832	high	2751138	pericentromeric	3091	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr1	17555179	17555711	AT1TE58240	.	-	ATREP1	Helitron	RC	532	short	498	high	2751209	pericentromeric	2559	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	17555711	17556047	AT1TE58245	.	-	ATREP5	Helitron	RC	336	short	624	high	2751741	pericentromeric	2223	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	17556047	17556116	AT1TE58250	.	+	ATREP15	Helitron	RC	69	tiny	1003	high	2752077	pericentromeric	2154	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	17556116	17556768	AT1TE58255	.	-	ATHPOGON1	Pogo	DNA	652	short	174	medium	2752146	pericentromeric	1502	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	17556770	17557113	AT1TE58260	.	+	ATREP15	Helitron	RC	343	short	1003	high	2752800	pericentromeric	1157	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	17557113	17557170	AT1TE58265	.	+	ATREP3	Helitron	RC	57	tiny	1439	high	2753143	pericentromeric	1100	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr1	17557170	17558145	AT1TE58270	.	+	HELITRONY1D	Helitron	RC	975	short	756	high	2753200	pericentromeric	125	no-CHH	no-CHH	.	.	.	.	.
Chr1	17558145	17558201	AT1TE58275	.	-	ATREP4	Helitron	RC	56	tiny	832	high	2754175	pericentromeric	69	no-CHH	no-CHH	.	.	.	.	.
Chr1	17563096	17563188	AT1TE58285	.	+	ATREP10A	Helitron	RC	92	tiny	279	high	2759126	pericentromeric	237	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	17563198	17563852	AT1TE58290	.	+	ATREP10C	Helitron	RC	654	short	123	medium	2759228	pericentromeric	78	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	17563852	17563954	AT1TE58295	.	+	ATREP15	Helitron	RC	102	short	1003	high	2759882	pericentromeric	0	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	17565163	17565319	AT1TE58300	.	-	ATREP10D	Helitron	RC	156	short	1295	high	2761193	pericentromeric	57	no-CHH	no-CHH	.	.	.	.	.
Chr1	17565319	17565829	AT1TE58305	.	-	ATREP10D	Helitron	RC	510	short	1295	high	2761349	pericentromeric	213	no-CHH	no-CHH	.	.	.	.	.
Chr1	17565829	17566111	AT1TE58310	.	-	VANDAL17	MuDR	DNA	282	short	178	medium	2761859	pericentromeric	723	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	17566621	17566717	AT1TE58315	.	-	ATCOPIA68	Copia	LTR	96	tiny	43	low	2762651	pericentromeric	1185	no-CHH	no-CHH	.	.	.	.	.
Chr1	17571313	17571922	AT1TE58325	.	-	ATDNA12T3_2	.	DNA	609	short	660	high	2767343	pericentromeric	528	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	17573149	17573552	AT1TE58330	.	+	BRODYAGA1A	MuDR	DNA	403	short	586	high	2769179	pericentromeric	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	17574109	17574664	AT1TE58335	.	-	ATCOPIA95	Copia	LTR	555	short	72	medium	2770139	pericentromeric	241	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	17576087	17576129	AT1TE58340	.	+	HELITRONY3	Helitron	RC	42	tiny	1399	high	2772117	pericentromeric	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	17576129	17577445	AT1TE58345	.	-	ATREP10D	Helitron	RC	1316	short	1295	high	2772159	pericentromeric	37	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	17577445	17577682	AT1TE58350	.	-	ATREP7	Helitron	RC	237	short	164	medium	2773475	pericentromeric	1353	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	17579412	17579664	AT1TE58355	.	+	ATREP10D	Helitron	RC	252	short	1295	high	2775442	pericentromeric	3320	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	17579664	17580076	AT1TE58360	.	+	BRODYAGA1	MuDR	DNA	412	short	251	high	2775694	pericentromeric	3572	no-CHH	no-CHH	.	.	.	.	.
Chr1	17580076	17580101	AT1TE58365	.	-	ATHPOGON1	Pogo	DNA	25	tiny	174	medium	2776106	pericentromeric	3984	no-CHH	no-CHH	.	.	.	.	.
Chr1	17589740	17590601	AT1TE58390	.	-	TSCL	.	LINE?	861	short	81	medium	2785770	pericentromeric	0	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	17592786	17592993	AT1TE58395	.	-	ATMUNX1	MuDR	DNA	207	short	155	medium	2788816	pericentromeric	1525	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	17593268	17593454	AT1TE58400	.	-	ATLINE1_3A	L1	LINE	186	short	160	medium	2789298	pericentromeric	1228	no-CHH	no-CHH	.	.	.	.	.
Chr1	17593454	17593712	AT1TE58405	.	+	ATHILA4B_LTR	Gypsy	LTR	258	short	143	medium	2789484	pericentromeric	970	no-CHH	no-CHH	.	.	.	.	.
Chr1	17596589	17597178	AT1TE58410	.	+	ATLINEIII	L1	LINE	589	short	196	medium	2792619	pericentromeric	719	no-CHH	no-CHH	.	.	.	.	.
Chr1	17602741	17602916	AT1TE58420	.	+	ATDNA2T9C	MuDR	DNA	175	short	242	high	2798771	pericentromeric	65	no-CHH	no-CHH	.	.	.	.	.
Chr1	17602916	17603444	AT1TE58425	.	+	ATREP4	Helitron	RC	528	short	832	high	2798946	pericentromeric	59	no-CHH	no-CHH	.	.	.	.	.
Chr1	17605500	17606391	AT1TE58430	.	+	ATREP2A	Helitron	RC	891	short	116	medium	2801530	pericentromeric	166	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	17606391	17606420	AT1TE58435	.	-	BRODYAGA2	MuDR	DNA	29	tiny	525	high	2802421	pericentromeric	137	no-CHH	no-CHH	.	.	.	.	.
Chr1	17606978	17607200	AT1TE58440	.	-	BRODYAGA2	MuDR	DNA	222	short	525	high	2803008	pericentromeric	160	no-CHH	no-CHH	.	.	.	.	.
Chr1	17607200	17607973	AT1TE58445	.	+	BRODYAGA1A	MuDR	DNA	773	short	586	high	2803230	pericentromeric	382	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	17607973	17608021	AT1TE58450	.	-	BRODYAGA1	MuDR	DNA	48	tiny	251	high	2804003	pericentromeric	1155	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	17608021	17611915	AT1TE58455	.	-	VANDAL18	MuDR	DNA	3894	medium	14	low	2804051	pericentromeric	198	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	17614932	17615625	AT1TE58460	.	-	HELITRONY1D	Helitron	RC	693	short	756	high	2810962	pericentromeric	148	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	17616850	17617075	AT1TE58465	.	+	ATHATN6	HAT	DNA	225	short	43	low	2812880	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	17619271	17619312	AT1TE58470	.	+	HELITRONY1E	Helitron	RC	41	tiny	447	high	2815301	pericentromeric	412	no-CHH	no-CHH	.	.	.	.	.
Chr1	17619321	17619878	AT1TE58475	.	+	ATREP15	Helitron	RC	557	short	1003	high	2815351	pericentromeric	462	no-CHH	no-CHH	.	.	.	.	.
Chr1	17619878	17620625	AT1TE58480	.	+	ATREP3	Helitron	RC	747	short	1439	high	2815908	pericentromeric	1019	no-RdDM	no-CHH	.	.	.	.	.
Chr1	17620625	17620653	AT1TE58485	.	+	HELITRONY1E	Helitron	RC	28	tiny	447	high	2816655	pericentromeric	1766	no-RdDM	no-CHH	.	.	.	.	.
Chr1	17621653	17621887	AT1TE58490	.	+	TAT1_ATH	Gypsy	LTR	234	short	87	medium	2817683	pericentromeric	2794	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	17621887	17621958	AT1TE58495	.	+	ATLANTYS3	Gypsy	LTR	71	tiny	142	medium	2817917	pericentromeric	3028	RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	17624595	17624811	AT1TE58500	.	-	ATCOPIA21	Copia	LTR	216	short	14	low	2820625	pericentromeric	5736	no-RdDM	no-CHH	.	.	.	.	.
Chr1	17624833	17627298	AT1TE58505	.	-	ATLINE2	L1	LINE	2465	medium	138	medium	2820863	pericentromeric	5974	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	17627298	17627355	AT1TE58510	.	-	ATLINEIII	L1	LINE	57	tiny	196	medium	2823328	pericentromeric	7581	no-RdDM	no-CHH	.	.	.	.	.
Chr1	17632242	17632374	AT1TE58520	.	+	ATREP11	Helitron	RC	132	short	841	high	2828272	pericentromeric	2562	no-CHH	no-CHH	.	.	.	.	.
Chr1	17632374	17633144	AT1TE58525	.	+	ATREP2A	Helitron	RC	770	short	116	medium	2828404	pericentromeric	1792	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	17633144	17633298	AT1TE58530	.	-	ATREP10D	Helitron	RC	154	short	1295	high	2829174	pericentromeric	1638	no-CHH	no-CHH	.	.	.	.	.
Chr1	17640403	17640631	AT1TE58560	.	+	ATCOPIA57	Copia	LTR	228	short	48	low	2836433	pericentromeric	1765	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	17652364	17652923	AT1TE58600	.	-	ATREP4	Helitron	RC	559	short	832	high	2848394	pericentromeric	1329	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	17653236	17653391	AT1TE58605	.	+	ATREP11	Helitron	RC	155	short	841	high	2849266	pericentromeric	2201	no-CHH	no-CHH	.	.	.	.	.
Chr1	17653391	17654582	AT1TE58610	.	-	ATREP10D	Helitron	RC	1191	short	1295	high	2849421	pericentromeric	2356	no-CHH	no-CHH	.	.	.	.	.
Chr1	17654582	17655619	AT1TE58615	.	+	ATREP6	Helitron	RC	1037	short	181	medium	2850612	pericentromeric	3547	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	17656304	17656748	AT1TE58620	.	+	TNAT1A	.	DNA	444	short	162	medium	2852334	pericentromeric	4003	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	17656786	17660319	AT1TE58625	.	+	ATLINE1A	L1	LINE	3533	medium	289	high	2852816	pericentromeric	432	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	17660319	17660517	AT1TE58630	.	+	TNAT1A	.	DNA	198	short	162	medium	2856349	pericentromeric	234	no-CHH	no-CHH	.	.	.	.	.
Chr1	17664620	17664724	AT1TE58640	.	+	ATHATN5	HAT	DNA	104	short	42	low	2860650	pericentromeric	2226	no-CHH	no-CHH	.	.	.	.	.
Chr1	17664922	17665029	AT1TE58645	.	+	BRODYAGA2	MuDR	DNA	107	short	525	high	2860952	pericentromeric	2528	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	17665029	17666250	AT1TE58650	.	-	BRODYAGA2	MuDR	DNA	1221	short	525	high	2861059	pericentromeric	2034	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	17666250	17666684	AT1TE58655	.	-	BRODYAGA2	MuDR	DNA	434	short	525	high	2862280	pericentromeric	1600	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	17666685	17666817	AT1TE58660	.	+	ATHATN5	HAT	DNA	133	short	42	low	2862714	pericentromeric	1467	.	.	.	.	.	.	.
Chr1	17673719	17673760	AT1TE58680	.	-	ATREP3	Helitron	RC	41	tiny	1439	high	2869749	pericentromeric	193	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	17673760	17674478	AT1TE58685	.	+	ATHPOGON3	Pogo	DNA	718	short	118	medium	2869790	pericentromeric	234	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	17674494	17674582	AT1TE58690	.	+	ATREP11A	Helitron	RC	88	tiny	95	medium	2870524	pericentromeric	968	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	17676760	17676785	AT1TE58695	.	-	ATCOPIA9	Copia	LTR	25	tiny	9	low	2872790	pericentromeric	3234	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	17676785	17681203	AT1TE58700	.	-	ATCOPIA51	Copia	LTR	4418	medium	14	low	2872815	pericentromeric	750	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	17681144	17679438	-	transcript_id-"de65a05c-db6e-4a76-9d08-8dae9e9f528b|6"
Chr1	17681203	17681246	AT1TE58705	.	-	ATCOPIA47	Copia	LTR	43	tiny	4	low	2877233	pericentromeric	707	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	17685123	17685222	AT1TE58715	.	-	HELITRONY3	Helitron	RC	99	tiny	1399	high	2881153	pericentromeric	1607	no-CHH	no-CHH	.	.	.	.	.
Chr1	17685222	17685243	AT1TE58720	.	+	ATREP15	Helitron	RC	21	tiny	1003	high	2881252	pericentromeric	1706	no-CHH	no-CHH	.	.	.	.	.
Chr1	17685243	17686629	AT1TE58725	.	-	ATREP6	Helitron	RC	1386	short	181	medium	2881273	pericentromeric	712	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	17686629	17686656	AT1TE58730	.	+	ATREP10D	Helitron	RC	27	tiny	1295	high	2882659	pericentromeric	685	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	17687584	17687723	AT1TE58735	.	-	ATCOPIA24	Copia	LTR	139	short	27	low	2883614	pericentromeric	0	no-CHH	DCL3-RdDM	.	.	.	.	.
Chr1	17689626	17690659	AT1TE58740	.	+	VANDAL18NA	MuDR	DNA	1033	short	24	low	2885656	pericentromeric	1064	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	17690659	17690741	AT1TE58745	.	+	VANDAL18NB	MuDR	DNA	82	tiny	19	low	2886689	pericentromeric	1243	no-CHH	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	17690747	17691210	AT1TE58750	.	-	ATCOPIA11	Copia	LTR	463	short	26	low	2886777	pericentromeric	774	no-CHH	no-RdDM	LowExpressed	.	.	.	.
Chr1	17702167	17702405	AT1TE58790	.	-	ATTIRTA1	Tc1	DNA	238	short	95	medium	2898197	pericentromeric	1333	no-CHH	no-CHH	.	.	.	.	.
Chr1	17706459	17706490	AT1TE58800	.	+	ATREP3	Helitron	RC	31	tiny	1439	high	2902489	pericentromeric	82	no-CHH	no-CHH	.	.	.	.	.
Chr1	17706490	17707964	AT1TE58805	.	+	ATREP15	Helitron	RC	1474	short	1003	high	2902520	pericentromeric	113	no-CHH	no-CHH	.	.	.	.	.
Chr1	17707964	17708087	AT1TE58810	.	+	HELITRONY1A	Helitron	RC	123	short	271	high	2903994	pericentromeric	1587	no-CHH	no-CHH	.	.	.	.	.
Chr1	17708087	17708149	AT1TE58815	.	+	ATREP15	Helitron	RC	62	tiny	1003	high	2904117	pericentromeric	1710	no-CHH	no-CHH	.	.	.	.	.
Chr1	17708149	17710775	AT1TE58820	.	+	HELITRONY3	Helitron	RC	2626	medium	1399	high	2904179	pericentromeric	715	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	17713519	17714780	AT1TE58825	.	+	ATGP1	Gypsy	LTR	1261	short	144	medium	2909549	pericentromeric	859	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	17713644	17714583	+	transcript_id-"cfee0298-8911-4760-9532-a6a611ca2501|13"
Chr1	17715277	17715450	AT1TE58830	.	-	RathE3_cons	.	RathE3_cons	173	short	104	medium	2911307	pericentromeric	783	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	17719001	17719183	AT1TE58840	.	-	ATDNA1T9A	MuDR	DNA	182	short	36	low	2915031	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	17726981	17727054	AT1TE58870	.	+	ATREP10D	Helitron	RC	73	tiny	1295	high	2923011	pericentromeric	122	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr1	17727054	17727204	AT1TE58875	.	+	RP1_AT	.	DNA	150	short	87	medium	2923084	pericentromeric	195	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	17727204	17727996	AT1TE58880	.	+	ATHPOGON3	Pogo	DNA	792	short	118	medium	2923234	pericentromeric	298	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	17727996	17728177	AT1TE58885	.	+	HELITRONY1E	Helitron	RC	181	short	447	high	2924026	pericentromeric	117	no-CHH	no-CHH	.	.	.	.	.
Chr1	17731840	17731892	AT1TE58895	.	+	ATLINEIII	L1	LINE	52	tiny	196	medium	2927870	pericentromeric	689	no-CHH	no-CHH	.	.	.	.	.
Chr1	17762382	17762599	AT1TE58990	.	-	ATREP17	MuDR	DNA	217	short	34	low	2958412	pericentromeric	384	no-CHH	no-CHH	.	.	.	.	.
Chr1	17766176	17766266	AT1TE59000	.	-	RathE1_cons	.	RathE1_cons	90	tiny	213	high	2962206	pericentromeric	654	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	17768604	17769057	AT1TE59005	.	-	BRODYAGA1A	MuDR	DNA	453	short	586	high	2964634	pericentromeric	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	17794533	17794722	AT1TE59080	.	-	ATCOPIA48	Copia	LTR	189	short	15	low	2990563	pericentromeric	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	17795960	17796350	AT1TE59085	.	-	BRODYAGA1A	MuDR	DNA	390	short	586	high	2991990	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	17812265	17812524	AT1TE59130	.	+	ATMU3	MuDR	DNA	259	short	15	low	3008295	pericentromeric	609	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	17812533	17813882	AT1TE59135	.	-	ATMU3	MuDR	DNA	1349	short	15	low	3008563	pericentromeric	343	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	17817421	17817818	AT1TE59145	.	-	BRODYAGA1A	MuDR	DNA	397	short	586	high	3013451	pericentromeric	195	no-CHH	no-CHH	.	.	.	.	.
Chr1	17819158	17819844	AT1TE59150	.	+	ATREP10D	Helitron	RC	686	short	1295	high	3015188	pericentromeric	1932	no-CHH	no-CHH	.	.	.	.	.
Chr1	17819844	17821266	AT1TE59155	.	-	ATDNA2T9B	MuDR	DNA	1422	short	26	low	3015874	pericentromeric	2618	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	17821506	17822618	AT1TE59160	.	+	ATREP10B	Helitron	RC	1112	short	491	high	3017536	pericentromeric	4280	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	17822618	17822857	AT1TE59165	.	-	HELITRONY1C	Helitron	RC	239	short	120	medium	3018648	pericentromeric	5392	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	17822857	17823602	AT1TE59170	.	+	ATDNA2T9C	MuDR	DNA	745	short	242	high	3018887	pericentromeric	4711	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	17823603	17823728	AT1TE59175	.	-	ATREP15	Helitron	RC	125	short	1003	high	3019633	pericentromeric	4585	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	17824799	17825358	AT1TE59180	.	-	ATHATN3A	HAT	DNA	559	short	20	low	3020829	pericentromeric	2955	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	17830419	17830731	AT1TE59190	.	-	ATREP10	Helitron	RC	312	short	63	medium	3026449	pericentromeric	205	no-CHH	no-CHH	.	.	.	.	.
Chr1	17831151	17831580	AT1TE59195	.	+	TSCL	.	LINE?	429	short	81	medium	3027181	pericentromeric	937	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	17838740	17838942	AT1TE59210	.	-	ATCOPIA95	Copia	LTR	202	short	72	medium	3034770	pericentromeric	1187	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	17838942	17839001	AT1TE59215	.	-	ATREP3	Helitron	RC	59	tiny	1439	high	3034972	pericentromeric	1389	no-CHH	no-CHH	.	.	.	.	.
Chr1	17839001	17839842	AT1TE59220	.	-	HELITRONY3	Helitron	RC	841	short	1399	high	3035031	pericentromeric	1448	no-CHH	no-CHH	.	.	.	.	.
Chr1	17839842	17839873	AT1TE59225	.	-	ATREP3	Helitron	RC	31	tiny	1439	high	3035872	pericentromeric	2289	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr1	17840570	17840805	AT1TE59230	.	-	RP1_AT	.	DNA	235	short	87	medium	3036600	pericentromeric	3017	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	17842302	17845285	AT1TE59235	.	+	ATMU7	MuDR	DNA	2983	medium	32	low	3038332	pericentromeric	2105	no-RdDM	no-RdDM	ExpressedAndAnnotated	17844992	17844225	-	transcript_id-"aa01e7ff-5c27-4e5d-9cb8-bf29535d6bc3|84"
Chr1	17845636	17846019	AT1TE59240	.	-	BRODYAGA1A	MuDR	DNA	383	short	586	high	3041666	pericentromeric	1371	no-CHH	no-CHH	.	.	.	.	.
Chr1	17847361	17847433	AT1TE59245	.	-	VANDAL21	MuDR	DNA	72	tiny	64	medium	3043391	pericentromeric	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	17861019	17861356	AT1TE59280	.	-	ATLINE1_3A	L1	LINE	337	short	160	medium	3057049	pericentromeric	2540	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	17866489	17866813	AT1TE59290	.	+	ATLINE2	L1	LINE	324	short	138	medium	3062519	pericentromeric	455	no-CHH	no-CHH	.	.	.	.	.
Chr1	17873229	17873851	AT1TE59310	.	+	ATREP15	Helitron	RC	622	short	1003	high	3069259	pericentromeric	283	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	17873851	17873885	AT1TE59315	.	+	ATLINE1_1	L1	LINE	34	tiny	61	medium	3069881	pericentromeric	674	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	17873885	17874352	AT1TE59320	.	+	ATLINE2	L1	LINE	467	short	138	medium	3069915	pericentromeric	207	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	17882827	17882876	AT1TE59350	.	+	VANDAL1	MuDR	DNA	49	tiny	80	medium	3078857	pericentromeric	0	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	17899006	17899245	AT1TE59400	.	+	ATMU6	MuDR	DNA	239	short	26	low	3095036	pericentromeric	203	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	17899246	17899309	AT1TE59405	.	+	ATMU6N1	MuDR	DNA	64	tiny	39	low	3095275	pericentromeric	442	.	.	.	.	.	.	.
Chr1	17899693	17899729	AT1TE59410	.	+	ATREP1	Helitron	RC	36	tiny	498	high	3095723	pericentromeric	890	no-CHH	no-CHH	.	.	.	.	.
Chr1	17899729	17902421	AT1TE59415	.	+	ATREP3	Helitron	RC	2692	medium	1439	high	3095759	pericentromeric	452	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	17902421	17902472	AT1TE59420	.	+	HELITRONY3	Helitron	RC	51	tiny	1399	high	3098451	pericentromeric	401	no-CHH	no-CHH	.	.	.	.	.
Chr1	17902472	17902550	AT1TE59425	.	+	HELITRONY3	Helitron	RC	78	tiny	1399	high	3098502	pericentromeric	323	no-CHH	no-CHH	.	.	.	.	.
Chr1	17911029	17911223	AT1TE59450	.	-	ATHATN6	HAT	DNA	194	short	43	low	3107059	pericentromeric	245	no-CHH	no-CHH	.	.	.	.	.
Chr1	17917909	17918158	AT1TE59470	.	+	DT1	Mariner	DNA	249	short	123	medium	3113939	pericentromeric	316	no-CHH	no-CHH	.	.	.	.	.
Chr1	17918364	17918409	AT1TE59475	.	-	LIMPET1	MuDR	DNA	45	tiny	116	medium	3114394	pericentromeric	65	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	17918409	17918586	AT1TE59480	.	+	ATENSPM5	En-Spm	DNA	177	short	111	medium	3114439	pericentromeric	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	17928868	17929873	AT1TE59510	.	+	ATREP4	Helitron	RC	1005	short	832	high	3124898	pericentromeric	271	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	17929873	17930037	AT1TE59515	.	-	ATLINE1_3A	L1	LINE	164	short	160	medium	3125903	pericentromeric	1276	no-CHH	no-CHH	.	.	.	.	.
Chr1	17936898	17936923	AT1TE59530	.	-	BOMZH2	MuDR	DNA	25	tiny	47	low	3132928	pericentromeric	247	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	17936923	17937991	AT1TE59535	.	+	BOMZH1	MuDR	DNA	1068	short	28	low	3132953	pericentromeric	272	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	17937991	17938021	AT1TE59540	.	-	ATMU3N1	MuDR	DNA	30	tiny	19	low	3134021	pericentromeric	1340	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	17939224	17939435	AT1TE59545	.	+	HELITRONY1C	Helitron	RC	211	short	120	medium	3135254	pericentromeric	749	no-CHH	no-CHH	.	.	.	.	.
Chr1	17944753	17944913	AT1TE59555	.	-	HELITRON1	Helitron	RC	160	short	130	medium	3140783	pericentromeric	533	no-CHH	no-CHH	.	.	.	.	.
Chr1	17965054	17965674	AT1TE59620	.	-	ATREP15	Helitron	RC	620	short	1003	high	3161084	pericentromeric	258	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	17976639	17977598	AT1TE59660	.	+	HELITRONY3	Helitron	RC	959	short	1399	high	3172669	pericentromeric	338	no-CHH	no-CHH	.	.	.	.	.
Chr1	17978683	17978756	AT1TE59665	.	-	ATREP10D	Helitron	RC	73	tiny	1295	high	3174713	pericentromeric	2382	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	17978756	17979423	AT1TE59670	.	-	HELITRONY1B	Helitron	RC	667	short	414	high	3174786	pericentromeric	2455	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	17979423	17979528	AT1TE59675	.	-	HELITRONY3	Helitron	RC	105	short	1399	high	3175453	pericentromeric	2448	no-CHH	no-CHH	.	.	.	.	.
Chr1	17998170	17998243	AT1TE59730	.	+	BRODYAGA2	MuDR	DNA	73	tiny	525	high	3194200	pericentromeric	198	no-CHH	no-CHH	.	.	.	.	.
Chr1	17998243	17998940	AT1TE59735	.	+	HELITRONY1E	Helitron	RC	697	short	447	high	3194273	pericentromeric	5	no-CHH	no-CHH	.	.	.	.	.
Chr1	18002176	18007370	AT1TE59745	.	-	ATCOPIA49	Copia	LTR	5194	long	34	low	3198206	pericentromeric	976	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	18013161	18018435	AT1TE59755	.	+	ATCOPIA78	Copia	LTR	5274	long	24	low	3209191	pericentromeric	0	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	18018638	18018751	AT1TE59760	.	+	ATCOPIA30	Copia	LTR	113	short	33	low	3214668	pericentromeric	197	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	18019679	18019944	AT1TE59765	.	+	RP1_AT	.	DNA	265	short	87	medium	3215709	pericentromeric	392	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	18020919	18022668	AT1TE59770	.	-	ATREP13	Helitron	RC	1749	short	106	medium	3216949	pericentromeric	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	18029275	18029335	AT1TE59790	.	-	RathE1_cons	.	RathE1_cons	60	tiny	213	high	3225305	pericentromeric	1493	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	18033270	18034112	AT1TE59800	.	+	ATHATN5	HAT	DNA	842	short	42	low	3229300	pericentromeric	1906	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	18034529	18035503	AT1TE59805	.	-	HELITRONY1D	Helitron	RC	974	short	756	high	3230559	pericentromeric	515	no-CHH	no-CHH	.	.	.	.	.
Chr1	18039467	18040087	AT1TE59815	.	+	ATREP4	Helitron	RC	620	short	832	high	3235497	pericentromeric	197	no-CHH	no-CHH	.	.	.	.	.
Chr1	18040387	18040705	AT1TE59820	.	+	ATREP16	MuDR	DNA	318	short	47	low	3236417	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	18049102	18049326	AT1TE59850	.	+	ATLINE1_3A	L1	LINE	224	short	160	medium	3245132	pericentromeric	517	no-CHH	no-CHH	.	.	.	.	.
Chr1	18053194	18054218	AT1TE59860	.	-	ATCOPIA17	Copia	LTR	1024	short	16	low	3249224	pericentromeric	219	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	18054218	18054241	AT1TE59865	.	-	ATCOPIA24	Copia	LTR	23	tiny	27	low	3250248	pericentromeric	987	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	18054241	18054285	AT1TE59870	.	-	ATCOPIA91	Copia	LTR	44	tiny	7	low	3250271	pericentromeric	943	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	18055830	18056097	AT1TE59875	.	-	RP1_AT	.	DNA	267	short	87	medium	3251860	pericentromeric	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	18057547	18058039	AT1TE59880	.	-	ATREP10D	Helitron	RC	492	short	1295	high	3253577	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	18058039	18058534	AT1TE59885	.	-	ATREP10B	Helitron	RC	495	short	491	high	3254069	pericentromeric	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	18068249	18068477	AT1TE59910	.	-	ATCOPIA87	Copia	LTR	228	short	19	low	3264279	pericentromeric	293	no-CHH	no-CHH	.	.	.	.	.
Chr1	18075257	18075767	AT1TE59930	.	-	ATREP11	Helitron	RC	510	short	841	high	3271287	pericentromeric	800	no-CHH	no-CHH	.	.	.	.	.
Chr1	18082990	18083226	AT1TE59950	.	-	ATRE1	Copia	LTR	236	short	22	low	3279020	pericentromeric	340	no-CHH	no-CHH	.	.	.	.	.
Chr1	18083498	18083785	AT1TE59955	.	-	ATCOPIA51	Copia	LTR	287	short	14	low	3279528	pericentromeric	848	no-CHH	no-CHH	.	.	.	.	.
Chr1	18083789	18084144	AT1TE59960	.	-	ATCOPIA89	Copia	LTR	355	short	12	low	3279819	pericentromeric	827	no-CHH	no-CHH	.	.	.	.	.
Chr1	18084144	18084168	AT1TE59965	.	-	ATCOPIA89	Copia	LTR	24	tiny	12	low	3280174	pericentromeric	803	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	18084342	18084441	AT1TE59970	.	+	ATCOPIA96	Copia	LTR	99	tiny	16	low	3280372	pericentromeric	530	no-CHH	no-CHH	.	.	.	.	.
Chr1	18089634	18091144	AT1TE59980	.	+	ATREP10B	Helitron	RC	1510	short	491	high	3285664	pericentromeric	536	no-RdDM	no-CHH	.	.	.	.	.
Chr1	18091144	18091442	AT1TE59985	.	-	ATREP3	Helitron	RC	298	short	1439	high	3287174	pericentromeric	238	no-CHH	no-CHH	.	.	.	.	.
Chr1	18091442	18091462	AT1TE59990	.	-	ATREP11	Helitron	RC	20	tiny	841	high	3287472	pericentromeric	218	no-CHH	no-CHH	.	.	.	.	.
Chr1	18096128	18096961	AT1TE60000	.	-	ATREP4	Helitron	RC	833	short	832	high	3292158	pericentromeric	1082	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	18105391	18105736	AT1TE60030	.	+	ATREP10C	Helitron	RC	345	short	123	medium	3301421	pericentromeric	71	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	18122213	18122286	AT1TE60080	.	+	RathE1_cons	.	RathE1_cons	73	tiny	213	high	3318243	pericentromeric	234	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	18135722	18136133	AT1TE60120	.	+	ATTIRX1C	.	DNA	411	short	39	low	3331752	pericentromeric	410	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	18149040	18149696	AT1TE60160	.	+	HELITRONY3	Helitron	RC	656	short	1399	high	3345070	pericentromeric	214	no-CHH	no-CHH	.	.	.	.	.
Chr1	18149696	18150436	AT1TE60165	.	-	HELITRONY1B	Helitron	RC	740	short	414	high	3345726	pericentromeric	201	no-CHH	no-CHH	.	.	.	.	.
Chr1	18150437	18150493	AT1TE60170	.	-	HELITRON4	Helitron	RC	57	tiny	199	medium	3346466	pericentromeric	144	.	.	.	.	.	.	.
Chr1	18154504	18163494	AT1TE60180	.	+	ATENSPM9	En-Spm	DNA	8990	long	97	medium	3350534	pericentromeric	1318	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	18159635,18159635,18159635,18159635	18162855,18162857,18162859,18162860	+,+,+,+	transcript_id-"d51fe8c8-498a-48de-9a64-5c0c15222ee4|9",transcript_id-"075c617d-37a2-4018-bb5f-35fb4ae656c7|28",transcript_id-"042db5d1-1cfd-4ec5-a658-d31e6b5155a2|3",transcript_id-"c5da327f-22fe-479a-a2be-31f13996fc1f|5"
Chr1	18163937	18164074	AT1TE60185	.	+	VANDAL16	MuDR	DNA	138	short	42	low	3359966	pericentromeric	2072	.	.	LowExpressed	.	.	.	.
Chr1	18164438	18164532	AT1TE60190	.	+	VANDAL15	MuDR	DNA	94	tiny	6	low	3360468	pericentromeric	1614	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	18164775	18164944	AT1TE60195	.	+	VANDAL20	MuDR	DNA	169	short	51	medium	3360805	pericentromeric	1202	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	18165826	18165915	AT1TE60200	.	+	VANDAL20	MuDR	DNA	89	tiny	51	medium	3361856	pericentromeric	231	DCL3-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	18172848	18173198	AT1TE60220	.	+	ATREP9	Helitron	RC	350	short	201	high	3368878	pericentromeric	228	no-CHH	no-CHH	.	.	.	.	.
Chr1	18189519	18190373	AT1TE60270	.	-	ATREP6	Helitron	RC	854	short	181	medium	3385549	pericentromeric	968	no-CHH	no-CHH	.	.	.	.	.
Chr1	18194291	18194470	AT1TE60280	.	+	ATLINE1_3A	L1	LINE	179	short	160	medium	3390321	pericentromeric	693	no-CHH	no-CHH	.	.	.	.	.
Chr1	18214047	18214134	AT1TE60340	.	+	VANDAL15	MuDR	DNA	87	tiny	6	low	3410077	pericentromeric	2404	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	18214248	18214616	AT1TE60345	.	+	VANDAL16	MuDR	DNA	368	short	42	low	3410278	pericentromeric	1922	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	18225400	18225974	AT1TE60380	.	-	ATREP4	Helitron	RC	574	short	832	high	3421430	pericentromeric	353	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	18226841	18227275	AT1TE60385	.	+	HELITRONY1A	Helitron	RC	434	short	271	high	3422871	pericentromeric	58	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	18231883	18231956	AT1TE60395	.	-	BRODYAGA2	MuDR	DNA	73	tiny	525	high	3427913	pericentromeric	651	no-CHH	no-CHH	.	.	.	.	.
Chr1	18231956	18232559	AT1TE60400	.	+	BRODYAGA1	MuDR	DNA	603	short	251	high	3427986	pericentromeric	48	no-CHH	no-CHH	.	.	.	.	.
Chr1	18233937	18234696	AT1TE60405	.	+	ATREP15	Helitron	RC	759	short	1003	high	3429967	pericentromeric	145	no-CHH	no-CHH	.	.	.	.	.
Chr1	18234696	18234725	AT1TE60410	.	-	ATREP10B	Helitron	RC	29	tiny	491	high	3430726	pericentromeric	116	no-CHH	no-CHH	.	.	.	.	.
Chr1	18240121	18240165	AT1TE60420	.	-	VANDAL17	MuDR	DNA	44	tiny	178	medium	3436151	pericentromeric	1796	no-CHH	no-CHH	.	.	.	.	.
Chr1	18240165	18240667	AT1TE60425	.	-	META1	Copia	LTR	502	short	138	medium	3436195	pericentromeric	1840	no-CHH	no-CHH	.	.	.	.	.
Chr1	18240667	18240688	AT1TE60430	.	+	HELITRONY3	Helitron	RC	21	tiny	1399	high	3436697	pericentromeric	2342	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	18242051	18246383	AT1TE60435	.	+	ATREP3	Helitron	RC	4332	medium	1439	high	3438081	pericentromeric	57	no-CHH	no-CHH	.	.	.	.	.
Chr1	18242090	18242163	AT1TE60440	.	+	ATREP11	Helitron	RC	73	tiny	841	high	3438120	pericentromeric	3765	no-CHH	no-CHH	.	.	.	.	.
Chr1	18242163	18243561	AT1TE60445	.	-	HELITRONY1D	Helitron	RC	1398	short	756	high	3438193	pericentromeric	2879	no-CHH	no-CHH	.	.	.	.	.
Chr1	18243561	18243786	AT1TE60450	.	-	ATREP5	Helitron	RC	225	short	624	high	3439591	pericentromeric	2654	no-CHH	no-CHH	.	.	.	.	.
Chr1	18244348	18245691	AT1TE60455	.	+	ATREP10B	Helitron	RC	1343	short	491	high	3440378	pericentromeric	749	no-CHH	no-CHH	.	.	.	.	.
Chr1	18269467	18269734	AT1TE60530	.	-	DT1	Mariner	DNA	268	short	123	medium	3465496	pericentromeric	43	.	.	LowExpressed	.	.	.	.
Chr1	18270033	18270081	AT1TE60535	.	-	ATREP19	.	DNA	48	tiny	189	medium	3466063	pericentromeric	610	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	18270081	18270463	AT1TE60540	.	+	ATTIR16T3A	.	DNA	382	short	106	medium	3466111	pericentromeric	658	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	18270463	18271031	AT1TE60545	.	-	ATHPOGON1	Pogo	DNA	568	short	174	medium	3466493	pericentromeric	1040	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	18271031	18271443	AT1TE60550	.	+	ARNOLDY2	MuDR	DNA	412	short	288	high	3467061	pericentromeric	1608	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	18280963	18281069	AT1TE60580	.	-	ATREP4	Helitron	RC	106	short	832	high	3476993	pericentromeric	90	no-CHH	no-RdDM	.	.	.	.	.
Chr1	18281069	18282150	AT1TE60585	.	-	HELITRONY1E	Helitron	RC	1081	short	447	high	3477099	pericentromeric	196	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	18287173	18287579	AT1TE60595	.	+	HELITRONY1D	Helitron	RC	406	short	756	high	3483203	pericentromeric	271	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	18289438	18289510	AT1TE60600	.	-	HELITRONY3	Helitron	RC	72	tiny	1399	high	3485468	pericentromeric	788	no-CHH	no-CHH	.	.	.	.	.
Chr1	18289510	18290175	AT1TE60605	.	-	ATREP5	Helitron	RC	665	short	624	high	3485540	pericentromeric	860	no-CHH	no-CHH	.	.	.	.	.
Chr1	18290175	18290199	AT1TE60610	.	+	HELITRONY1A	Helitron	RC	24	tiny	271	high	3486205	pericentromeric	988	no-CHH	no-CHH	.	.	.	.	.
Chr1	18297467	18297687	AT1TE60630	.	-	VANDAL18NA	MuDR	DNA	220	short	24	low	3493497	pericentromeric	1806	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	18299772	18299924	AT1TE60635	.	+	ATREP6	Helitron	RC	152	short	181	medium	3495802	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	18299924	18302638	AT1TE60640	.	-	ARNOLDY2	MuDR	DNA	2714	medium	288	high	3495954	pericentromeric	62	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	18300266	18301257	AT1TE60645	.	-	ATREP1	Helitron	RC	991	short	498	high	3496296	pericentromeric	404	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	18301257	18301373	AT1TE60650	.	-	ARNOLDY2	MuDR	DNA	116	short	288	high	3497287	pericentromeric	1395	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	18302638	18302688	AT1TE60655	.	-	HELITRONY3	Helitron	RC	50	tiny	1399	high	3498668	pericentromeric	2776	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	18302688	18302776	AT1TE60660	.	+	HELITRONY3	Helitron	RC	88	tiny	1399	high	3498718	pericentromeric	2826	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr1	18302776	18304452	AT1TE60665	.	+	ATLINE2	L1	LINE	1676	short	138	medium	3498806	pericentromeric	1231	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	18308582	18308791	AT1TE60675	.	+	ATCOPIA53	Copia	LTR	209	short	5	low	3504612	pericentromeric	1483	no-CHH	no-CHH	.	.	.	.	.
Chr1	18316699	18316748	AT1TE60700	.	+	HELITRON2	Helitron	RC	49	tiny	194	medium	3512729	pericentromeric	814	no-CHH	no-CHH	.	.	.	.	.
Chr1	18316748	18317496	AT1TE60705	.	+	HELITRONY1D	Helitron	RC	748	short	756	high	3512778	pericentromeric	66	no-CHH	no-CHH	.	.	.	.	.
Chr1	18317496	18317566	AT1TE60710	.	-	ATREP4	Helitron	RC	70	tiny	832	high	3513526	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	18318075	18318453	AT1TE60715	.	-	ATCOPIA5	Copia	LTR	378	short	16	low	3514105	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	18320602	18320669	AT1TE60720	.	+	ATREP7	Helitron	RC	67	tiny	164	medium	3516632	pericentromeric	496	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	18320669	18321177	AT1TE60725	.	-	ATREP19	.	DNA	508	short	189	medium	3516699	pericentromeric	563	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	18323783	18324341	AT1TE60730	.	-	ATREP19	.	DNA	558	short	189	medium	3519813	pericentromeric	1604	no-CHH	no-CHH	.	.	.	.	.
Chr1	18324341	18324371	AT1TE60735	.	-	ATREP3	Helitron	RC	30	tiny	1439	high	3520371	pericentromeric	2162	no-CHH	no-CHH	.	.	.	.	.
Chr1	18324371	18326405	AT1TE60740	.	+	ATREP10D	Helitron	RC	2034	medium	1295	high	3520401	pericentromeric	620	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	18326405	18326727	AT1TE60745	.	+	ATREP5	Helitron	RC	322	short	624	high	3522435	pericentromeric	298	no-CHH	no-CHH	.	.	.	.	.
Chr1	18338814	18339763	AT1TE60780	.	+	TAG2	HAT	DNA	949	short	86	medium	3534844	pericentromeric	1432	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	18339763	18339852	AT1TE60785	.	+	ATCOPIA68	Copia	LTR	89	tiny	43	low	3535793	pericentromeric	2381	no-CHH	no-CHH	.	.	.	.	.
Chr1	18346027	18346370	AT1TE60800	.	-	ATLINE1_4	L1	LINE	343	short	102	medium	3542057	pericentromeric	706	no-CHH	no-CHH	.	.	.	.	.
Chr1	18350651	18351347	AT1TE60810	.	-	HELITRONY3	Helitron	RC	696	short	1399	high	3546681	pericentromeric	263	no-CHH	no-CHH	.	.	.	.	.
Chr1	18351431	18351539	AT1TE60815	.	-	ATDNAI27T9C	MuDR	DNA	108	short	108	medium	3547461	pericentromeric	71	no-CHH	no-CHH	.	.	.	.	.
Chr1	18360836	18361592	AT1TE60840	.	+	ATREP11	Helitron	RC	756	short	841	high	3556866	pericentromeric	86	no-CHH	no-CHH	.	.	.	.	.
Chr1	18386409	18386638	AT1TE60920	.	-	BRODYAGA2	MuDR	DNA	229	short	525	high	3582439	pericentromeric	228	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	18387256	18387486	AT1TE60925	.	+	BRODYAGA2	MuDR	DNA	230	short	525	high	3583286	pericentromeric	90	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	18390641	18391418	AT1TE60935	.	-	ATREP11	Helitron	RC	777	short	841	high	3586671	pericentromeric	145	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	18394886	18395577	AT1TE60945	.	-	ATREP1	Helitron	RC	691	short	498	high	3590916	pericentromeric	1117	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	18395577	18396534	AT1TE60950	.	-	ATMUN1	MuDR	DNA	957	short	107	medium	3591607	pericentromeric	318	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	18396534	18397484	AT1TE60955	.	+	ATREP3	Helitron	RC	950	short	1439	high	3592564	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	18397484	18397543	AT1TE60960	.	+	ATREP3	Helitron	RC	59	tiny	1439	high	3593514	pericentromeric	145	no-CHH	no-CHH	.	.	.	.	.
Chr1	18397544	18398546	AT1TE60965	.	+	ATMUN1	MuDR	DNA	1003	short	107	medium	3593573	pericentromeric	204	.	.	.	.	.	.	.
Chr1	18398553	18398816	AT1TE60970	.	+	ATREP15	Helitron	RC	263	short	1003	high	3594583	pericentromeric	1214	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	18412916	18413092	AT1TE61020	.	-	ATREP3	Helitron	RC	176	short	1439	high	3608946	pericentromeric	137	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	18413092	18413670	AT1TE61025	.	+	HELITRON4	Helitron	RC	578	short	199	medium	3609122	pericentromeric	313	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	18413670	18414034	AT1TE61030	.	+	HELITRONY3	Helitron	RC	364	short	1399	high	3609700	pericentromeric	891	no-CHH	no-CHH	.	.	.	.	.
Chr1	18414724	18415296	AT1TE61035	.	-	ATREP11	Helitron	RC	572	short	841	high	3610754	pericentromeric	1443	no-RdDM	no-CHH	.	.	.	.	.
Chr1	18415296	18415336	AT1TE61040	.	+	HELITRON2	Helitron	RC	40	tiny	194	medium	3611326	pericentromeric	1403	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	18420647	18420692	AT1TE61050	.	-	ATHPOGON1	Pogo	DNA	45	tiny	174	medium	3616677	pericentromeric	894	no-CHH	no-CHH	.	.	.	.	.
Chr1	18420692	18421416	AT1TE61055	.	-	ATHPOGON2	Pogo	DNA	724	short	27	low	3616722	pericentromeric	939	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	18421416	18421503	AT1TE61060	.	+	ATREP4	Helitron	RC	87	tiny	832	high	3617446	pericentromeric	1663	no-CHH	no-CHH	.	.	.	.	.
Chr1	18421503	18424352	AT1TE61065	.	+	ATREP10D	Helitron	RC	2849	medium	1295	high	3617533	pericentromeric	225	no-CHH	no-CHH	.	.	.	.	.
Chr1	18424352	18424384	AT1TE61070	.	-	BRODYAGA2	MuDR	DNA	32	tiny	525	high	3620382	pericentromeric	193	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	18424384	18424413	AT1TE61075	.	+	ATREP3	Helitron	RC	29	tiny	1439	high	3620414	pericentromeric	164	no-CHH	no-CHH	.	.	.	.	.
Chr1	18433793	18434665	AT1TE61100	.	-	ATREP10D	Helitron	RC	872	short	1295	high	3629823	pericentromeric	685	no-CHH	no-CHH	.	.	.	.	.
Chr1	18434665	18434750	AT1TE61105	.	+	ATREP10D	Helitron	RC	85	tiny	1295	high	3630695	pericentromeric	600	no-CHH	no-CHH	.	.	.	.	.
Chr1	18437208	18438136	AT1TE61110	.	+	BRODYAGA1	MuDR	DNA	928	short	251	high	3633238	pericentromeric	140	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	18442271	18442700	AT1TE61120	.	+	ATREP10D	Helitron	RC	429	short	1295	high	3638301	pericentromeric	34	no-CHH	no-CHH	.	.	.	.	.
Chr1	18442700	18442749	AT1TE61125	.	+	ATREP10C	Helitron	RC	49	tiny	123	medium	3638730	pericentromeric	255	no-CHH	no-CHH	.	.	.	.	.
Chr1	18448877	18449114	AT1TE61140	.	+	ATREP4	Helitron	RC	237	short	832	high	3644907	pericentromeric	2218	no-CHH	no-CHH	.	.	.	.	.
Chr1	18449114	18450393	AT1TE61145	.	-	ATREP11	Helitron	RC	1279	short	841	high	3645144	pericentromeric	1849	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	18450393	18450576	AT1TE61150	.	-	ATREP11	Helitron	RC	183	short	841	high	3646423	pericentromeric	1666	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	18456782	18457134	AT1TE61170	.	-	ATMU5	MuDR	DNA	352	short	24	low	3652812	pericentromeric	338	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	18457137	18457358	AT1TE61175	.	-	ATMU5	MuDR	DNA	221	short	24	low	3653167	pericentromeric	693	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	18457968	18458190	AT1TE61180	.	+	RP1_AT	.	DNA	223	short	87	medium	3653997	pericentromeric	519	.	.	.	.	.	.	.
Chr1	18468646	18470057	AT1TE61210	.	+	ATREP15	Helitron	RC	1411	short	1003	high	3664676	pericentromeric	224	no-CHH	no-CHH	.	.	.	.	.
Chr1	18478687	18478753	AT1TE61240	.	-	ATLINE1A	L1	LINE	66	tiny	289	high	3674717	pericentromeric	271	no-CHH	no-CHH	.	.	.	.	.
Chr1	18493600	18493711	AT1TE61290	.	+	ARNOLDY2	MuDR	DNA	111	short	288	high	3689630	pericentromeric	727	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	18493711	18494035	AT1TE61295	.	+	ARNOLDY1	MuDR	DNA	324	short	237	high	3689741	pericentromeric	403	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	18497674	18498299	AT1TE61305	.	+	ATREP15	Helitron	RC	625	short	1003	high	3693704	pericentromeric	400	no-CHH	no-CHH	.	.	.	.	.
Chr1	18506025	18506065	AT1TE61330	.	-	ATREP4	Helitron	RC	40	tiny	832	high	3702055	pericentromeric	594	no-CHH	no-CHH	.	.	.	.	.
Chr1	18506065	18507853	AT1TE61335	.	+	ATREP11A	Helitron	RC	1788	short	95	medium	3702095	pericentromeric	172	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	18545173	18546015	AT1TE61450	.	-	HELITRONY1C	Helitron	RC	842	short	120	medium	3741203	pericentromeric	149	no-CHH	no-CHH	.	.	.	.	.
Chr1	18551511	18551538	AT1TE61460	.	-	ATREP15	Helitron	RC	27	tiny	1003	high	3747541	pericentromeric	0	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	18551538	18552259	AT1TE61465	.	-	ATHPOGON1	Pogo	DNA	721	short	174	medium	3747568	pericentromeric	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	18552259	18552326	AT1TE61470	.	+	ATREP3	Helitron	RC	67	tiny	1439	high	3748289	pericentromeric	0	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	18553080	18553122	AT1TE61475	.	+	ATREP15	Helitron	RC	42	tiny	1003	high	3749110	pericentromeric	634	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	18553122	18553622	AT1TE61480	.	-	ATTIR16T3A	.	DNA	500	short	106	medium	3749152	pericentromeric	378	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	18553622	18553842	AT1TE61485	.	+	ATREP15	Helitron	RC	220	short	1003	high	3749652	pericentromeric	158	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	18557182	18557304	AT1TE61495	.	+	ATLINE1_4	L1	LINE	122	short	102	medium	3753212	pericentromeric	388	no-CHH	no-CHH	.	.	.	.	.
Chr1	18579416	18579496	AT1TE61560	.	-	TAG1	HAT	DNA	80	tiny	28	low	3775446	pericentromeric	753	no-CHH	no-RdDM	.	.	.	.	.
Chr1	18579496	18580199	AT1TE61565	.	+	ATHPOGON3	Pogo	DNA	703	short	118	medium	3775526	pericentromeric	833	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	18580199	18580233	AT1TE61570	.	-	HELITRONY1B	Helitron	RC	34	tiny	414	high	3776229	pericentromeric	1195	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	18580233	18580302	AT1TE61575	.	+	ATREP11	Helitron	RC	69	tiny	841	high	3776263	pericentromeric	1126	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	18598975	18599359	AT1TE61630	.	+	ATMUN2	MuDR	DNA	384	short	6	low	3795005	pericentromeric	664	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	18599359	18599462	AT1TE61635	.	+	HELITRONY3	Helitron	RC	103	short	1399	high	3795389	pericentromeric	1048	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	18599462	18600585	AT1TE61640	.	-	ARNOLDY1	MuDR	DNA	1123	short	237	high	3795492	pericentromeric	1151	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	18600585	18600630	AT1TE61645	.	-	ARNOLD4	MuDR	DNA	45	tiny	23	low	3796615	pericentromeric	2274	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	18600630	18600669	AT1TE61650	.	-	ARNOLD4	MuDR	DNA	39	tiny	23	low	3796660	pericentromeric	2288	no-CHH	no-CHH	.	.	.	.	.
Chr1	18605157	18606513	AT1TE61660	.	-	ATREP15	Helitron	RC	1356	short	1003	high	3801187	pericentromeric	549	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	18626627	18626811	AT1TE61730	.	+	ATREP3	Helitron	RC	184	short	1439	high	3822657	chromoarm	335	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	18626813	18627361	AT1TE61735	.	+	ATHPOGON1	Pogo	DNA	548	short	174	medium	3822843	chromoarm	496	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	18627361	18627449	AT1TE61740	.	+	HELITRONY1D	Helitron	RC	88	tiny	756	high	3823391	chromoarm	408	no-CHH	no-CHH	.	.	.	.	.
Chr1	18632070	18632330	AT1TE61750	.	-	ATREP3	Helitron	RC	260	short	1439	high	3828100	chromoarm	408	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	18632330	18633937	AT1TE61755	.	-	ATREP13	Helitron	RC	1607	short	106	medium	3828360	chromoarm	668	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	18633937	18634234	AT1TE61760	.	+	ATREP15	Helitron	RC	297	short	1003	high	3829967	chromoarm	1749	no-CHH	no-CHH	.	.	.	.	.
Chr1	18642458	18643058	AT1TE61790	.	-	ATREP5	Helitron	RC	600	short	624	high	3838488	chromoarm	1979	no-CHH	no-CHH	.	.	.	.	.
Chr1	18643653	18644174	AT1TE61795	.	-	ATCOPIA82	Copia	LTR	521	short	7	low	3839683	chromoarm	3174	PolIV-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	18646907	18647461	AT1TE61800	.	+	ATREP10B	Helitron	RC	554	short	491	high	3842937	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	18647730	18648596	AT1TE61805	.	-	ATREP10D	Helitron	RC	866	short	1295	high	3843760	chromoarm	0	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	18670472	18672041	AT1TE61870	.	-	ATREP3	Helitron	RC	1569	short	1439	high	3866502	chromoarm	150	no-CHH	no-CHH	.	.	.	.	.
Chr1	18672041	18672100	AT1TE61875	.	-	ATREP9	Helitron	RC	59	tiny	201	high	3868071	chromoarm	727	no-CHH	no-CHH	.	.	.	.	.
Chr1	18691169	18691545	AT1TE61930	.	-	HELITRONY1D	Helitron	RC	376	short	756	high	3887199	chromoarm	821	no-CHH	no-CHH	.	.	.	.	.
Chr1	18692242	18692438	AT1TE61935	.	-	ATHATN1	HAT	DNA	196	short	69	medium	3888272	chromoarm	1592	no-CHH	no-CHH	.	.	.	.	.
Chr1	18692625	18693040	AT1TE61940	.	-	ATENSPM1A	En-Spm	DNA	415	short	77	medium	3888655	chromoarm	990	no-CHH	no-CHH	ExpressedAndAnnotated	18692608,18692611	18693095,18692928	+,+	transcript_id-"46a0ae07-ee36-49d2-b9c4-455547271cc8|4",transcript_id-"76bb1f95-6a56-4e99-8a4c-f03706b07a25|4"
Chr1	18693071	18693225	AT1TE61945	.	+	HELITRON1	Helitron	RC	154	short	130	medium	3889101	chromoarm	805	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	18735048	18735361	AT1TE62080	.	-	BRODYAGA2	MuDR	DNA	313	short	525	high	3931078	chromoarm	995	no-CHH	no-CHH	.	.	.	.	.
Chr1	18744621	18745214	AT1TE62110	.	-	ATREP1	Helitron	RC	593	short	498	high	3940651	chromoarm	120	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	18745214	18745258	AT1TE62115	.	+	BRODYAGA2	MuDR	DNA	44	tiny	525	high	3941244	chromoarm	713	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	18745258	18745296	AT1TE62120	.	-	ATREP10B	Helitron	RC	38	tiny	491	high	3941288	chromoarm	757	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	18745296	18745917	AT1TE62125	.	+	ATHATN7	HAT	DNA	621	short	71	medium	3941326	chromoarm	795	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	18745926	18746043	AT1TE62130	.	-	ATREP5	Helitron	RC	118	short	624	high	3941955	chromoarm	1424	.	.	.	.	.	.	.
Chr1	18746043	18746141	AT1TE62135	.	-	ATREP3	Helitron	RC	98	tiny	1439	high	3942073	chromoarm	1542	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	18746141	18747137	AT1TE62140	.	-	ATREP3	Helitron	RC	996	short	1439	high	3942171	chromoarm	1399	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	18747137	18747283	AT1TE62145	.	+	ATREP5	Helitron	RC	146	short	624	high	3943167	chromoarm	1253	no-CHH	no-CHH	.	.	.	.	.
Chr1	18759735	18760025	AT1TE62180	.	+	ATCOPIA69	Copia	LTR	290	short	25	low	3955765	chromoarm	1456	no-CHH	no-CHH	.	.	.	.	.
Chr1	18765725	18765842	AT1TE62190	.	-	ATREP3	Helitron	RC	117	short	1439	high	3961755	chromoarm	1428	no-CHH	no-CHH	.	.	.	.	.
Chr1	18765843	18765891	AT1TE62195	.	-	ATREP11	Helitron	RC	49	tiny	841	high	3961872	chromoarm	1545	.	.	.	.	.	.	.
Chr1	18765891	18766872	AT1TE62200	.	-	ATREP11	Helitron	RC	981	short	841	high	3961921	chromoarm	1594	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	18766872	18766901	AT1TE62205	.	-	ATREP10B	Helitron	RC	29	tiny	491	high	3962902	chromoarm	2575	no-CHH	no-CHH	.	.	.	.	.
Chr1	18766901	18767011	AT1TE62210	.	+	ATREP10B	Helitron	RC	110	short	491	high	3962931	chromoarm	2604	no-CHH	no-CHH	.	.	.	.	.
Chr1	18767011	18768116	AT1TE62215	.	-	ATREP10D	Helitron	RC	1105	short	1295	high	3963041	chromoarm	2714	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	18768116	18770603	AT1TE62220	.	-	ATREP10D	Helitron	RC	2487	medium	1295	high	3964146	chromoarm	782	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	18770603	18770635	AT1TE62225	.	+	BRODYAGA2	MuDR	DNA	32	tiny	525	high	3966633	chromoarm	750	no-RdDM	no-CHH	.	.	.	.	.
Chr1	18789718	18789793	AT1TE62280	.	-	HELITRONY3	Helitron	RC	75	tiny	1399	high	3985748	chromoarm	74	no-CHH	no-CHH	.	.	.	.	.
Chr1	18789807	18793041	AT1TE62285	.	-	ATREP3	Helitron	RC	3234	medium	1439	high	3985837	chromoarm	163	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	18793041	18793114	AT1TE62290	.	+	ATREP3	Helitron	RC	73	tiny	1439	high	3989071	chromoarm	2160	no-CHH	no-CHH	.	.	.	.	.
Chr1	18793114	18793147	AT1TE62295	.	-	ATREP3	Helitron	RC	33	tiny	1439	high	3989144	chromoarm	2127	no-CHH	no-CHH	.	.	.	.	.
Chr1	18793147	18793856	AT1TE62300	.	+	ATREP5	Helitron	RC	709	short	624	high	3989177	chromoarm	1418	no-CHH	no-CHH	.	.	.	.	.
Chr1	18794647	18794903	AT1TE62305	.	+	ATHILA7	Gypsy	LTR	256	short	134	medium	3990677	chromoarm	371	no-CHH	no-CHH	.	.	.	.	.
Chr1	18804089	18804521	AT1TE62330	.	-	ATREP1	Helitron	RC	432	short	498	high	4000119	chromoarm	826	no-CHH	no-CHH	.	.	.	.	.
Chr1	18804534	18805133	AT1TE62335	.	-	ATREP2A	Helitron	RC	599	short	116	medium	4000564	chromoarm	1271	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	18805137	18805189	AT1TE62340	.	-	ATREP10B	Helitron	RC	52	tiny	491	high	4001167	chromoarm	1874	no-CHH	no-CHH	.	.	.	.	.
Chr1	18805189	18805546	AT1TE62345	.	-	HELITRONY1D	Helitron	RC	357	short	756	high	4001219	chromoarm	1926	no-CHH	no-CHH	.	.	.	.	.
Chr1	18805546	18806423	AT1TE62350	.	-	ATREP10D	Helitron	RC	877	short	1295	high	4001576	chromoarm	1437	no-CHH	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	18805592	18805853	AT1TE62355	.	-	ATTIRTA1	Tc1	DNA	261	short	95	medium	4001622	chromoarm	2007	no-CHH	no-CHH	.	.	.	.	.
Chr1	18806507	18807394	AT1TE62360	.	-	SADHU	.	Unassigned	887	short	16	low	4002537	chromoarm	466	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	18806865,18807399,18806662	18806489,18806497,18807622	-,-,+	transcript_id-"b6f93d92-cd71-4c09-9c6d-68f0c505548d|3",transcript_id-"cd19b791-c82a-43e2-8568-f95afc084ae6|160",transcript_id-"d5d187fb-674d-404a-a89c-411aec51521b|4"
Chr1	18815486	18816392	AT1TE62390	.	-	HELITRONY1E	Helitron	RC	906	short	447	high	4011516	chromoarm	226	no-CHH	no-CHH	.	.	.	.	.
Chr1	18816392	18816504	AT1TE62395	.	-	HELITRON2	Helitron	RC	112	short	194	medium	4012422	chromoarm	1132	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	18816505	18816805	AT1TE62400	.	+	DT1	Mariner	DNA	301	short	123	medium	4012534	chromoarm	1244	.	.	.	.	.	.	.
Chr1	18816805	18816831	AT1TE62405	.	+	ATREP15	Helitron	RC	26	tiny	1003	high	4012835	chromoarm	1545	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	18817441	18817595	AT1TE62410	.	+	RathE3_cons	.	RathE3_cons	155	short	104	medium	4013470	chromoarm	963	.	.	.	.	.	.	.
Chr1	18817595	18818027	AT1TE62415	.	+	ATREP11	Helitron	RC	432	short	841	high	4013625	chromoarm	531	no-CHH	no-CHH	.	.	.	.	.
Chr1	18828526	18833280	AT1TE62440	.	+	ATCOPIA36	Copia	LTR	4754	medium	14	low	4024556	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	18839204	18839424	AT1TE62450	.	+	ATENSPM1A	En-Spm	DNA	220	short	77	medium	4035234	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	18846374	18854882	AT1TE62470	.	-	ATENSPM5	En-Spm	DNA	8508	long	111	medium	4042404	chromoarm	264	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	18849995	18847092	-	transcript_id-"84fc075f-cf37-44be-8773-447d6111a72e|30"
Chr1	18857315	18857706	AT1TE62475	.	+	BRODYAGA1A	MuDR	DNA	391	short	586	high	4053345	chromoarm	978	no-CHH	no-CHH	.	.	.	.	.
Chr1	18858560	18858812	AT1TE62480	.	+	ATTIRTA1	Tc1	DNA	252	short	95	medium	4054590	chromoarm	2024	no-CHH	no-CHH	.	.	.	.	.
Chr1	18860036	18860250	AT1TE62485	.	-	AT9NMU1	MuDR	DNA	215	short	45	low	4056065	chromoarm	586	.	.	.	.	.	.	.
Chr1	18873929	18874466	AT1TE62530	.	-	ATLANTYS3	Gypsy	LTR	537	short	142	medium	4069959	chromoarm	1359	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	18884948	18886365	AT1TE62560	.	-	ATREP10A	Helitron	RC	1417	short	279	high	4080978	chromoarm	167	no-CHH	no-CHH	.	.	.	.	.
Chr1	18888152	18888427	AT1TE62565	.	-	ATREP16	MuDR	DNA	275	short	47	low	4084182	chromoarm	1121	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	18892859	18893847	AT1TE62575	.	+	ATREP10D	Helitron	RC	988	short	1295	high	4088889	chromoarm	1140	no-CHH	no-CHH	.	.	.	.	.
Chr1	18893847	18893878	AT1TE62580	.	+	ATREP11	Helitron	RC	31	tiny	841	high	4089877	chromoarm	2128	no-CHH	no-RdDM	.	.	.	.	.
Chr1	18894358	18895470	AT1TE62585	.	+	ATGP1	Gypsy	LTR	1112	short	144	medium	4090388	chromoarm	852	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	18894557	18895373	+	transcript_id-"0ccc7d00-fe81-4d31-8964-cbdfbf03a315|3"
Chr1	18895470	18896091	AT1TE62590	.	+	ATREP1	Helitron	RC	621	short	498	high	4091500	chromoarm	231	no-CHH	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	18896091	18896157	AT1TE62595	.	+	ATREP4	Helitron	RC	66	tiny	832	high	4092121	chromoarm	165	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	18902107	18902129	AT1TE62605	.	+	ATREP3	Helitron	RC	22	tiny	1439	high	4098137	chromoarm	50	no-CHH	no-CHH	.	.	.	.	.
Chr1	18902129	18902608	AT1TE62610	.	+	HELITRONY1D	Helitron	RC	479	short	756	high	4098159	chromoarm	72	no-CHH	no-CHH	.	.	.	.	.
Chr1	18902608	18902675	AT1TE62615	.	+	ATREP3	Helitron	RC	67	tiny	1439	high	4098638	chromoarm	254	no-CHH	no-CHH	.	.	.	.	.
Chr1	18905305	18905529	AT1TE62620	.	-	HELITRONY1E	Helitron	RC	224	short	447	high	4101335	chromoarm	101	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	18905532	18906231	AT1TE62625	.	+	ATREP3	Helitron	RC	699	short	1439	high	4101562	chromoarm	328	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	18906671	18906691	AT1TE62630	.	+	ATREP3	Helitron	RC	20	tiny	1439	high	4102701	chromoarm	1467	no-CHH	no-CHH	.	.	.	.	.
Chr1	18907191	18907231	AT1TE62635	.	-	BRODYAGA1A	MuDR	DNA	40	tiny	586	high	4103221	chromoarm	1987	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	18924996	18925035	AT1TE62690	.	-	RathE1_cons	.	RathE1_cons	39	tiny	213	high	4121026	chromoarm	250	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	18930007	18930196	AT1TE62700	.	+	VANDAL8	MuDR	DNA	189	short	123	medium	4126037	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	18930795	18931187	AT1TE62705	.	+	ATTIRX1C	.	DNA	392	short	39	low	4126825	chromoarm	55	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	18931329	18931653	AT1TE62710	.	-	ATLINE1_3A	L1	LINE	324	short	160	medium	4127359	chromoarm	589	no-CHH	no-CHH	.	.	.	.	.
Chr1	18931756	18932234	AT1TE62715	.	+	BRODYAGA1A	MuDR	DNA	478	short	586	high	4127786	chromoarm	750	no-CHH	no-CHH	.	.	.	.	.
Chr1	18955652	18955762	AT1TE62790	.	-	ATIS112A	Harbinger	DNA	110	short	173	medium	4151682	chromoarm	813	no-CHH	no-CHH	.	.	.	.	.
Chr1	18962035	18962094	AT1TE62810	.	-	ATHILA4C	Gypsy	LTR	59	tiny	206	high	4158065	chromoarm	1110	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	18966108	18969386	AT1TE62820	.	-	ATLANTYS1	Gypsy	LTR	3278	medium	153	medium	4162138	chromoarm	537	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	18969794	18971496	AT1TE62825	.	-	TAT1_ATH	Gypsy	LTR	1702	short	87	medium	4165824	chromoarm	4223	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	18971499	18972199	AT1TE62830	.	-	ATHILA4D_LTR	Gypsy	LTR	700	short	106	medium	4167529	chromoarm	5317	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	18972201	18972253	AT1TE62835	.	-	ATHILA4B_LTR	Gypsy	LTR	52	tiny	143	medium	4168231	chromoarm	5263	no-CHH	no-CHH	.	.	.	.	.
Chr1	18980519	18980599	AT1TE62860	.	-	ATREP15	Helitron	RC	80	tiny	1003	high	4176549	chromoarm	214	no-CHH	no-CHH	.	.	.	.	.
Chr1	18980599	18981376	AT1TE62865	.	-	ATREP14	Helitron	RC	777	short	47	low	4176629	chromoarm	294	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	18981376	18981493	AT1TE62870	.	-	HELITRONY1E	Helitron	RC	117	short	447	high	4177406	chromoarm	1071	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	18982386	18983645	AT1TE62875	.	-	HELITRONY3	Helitron	RC	1259	short	1399	high	4178416	chromoarm	2044	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	18987193	18987445	AT1TE62885	.	+	ATENSPM4	En-Spm	DNA	252	short	50	medium	4183223	chromoarm	363	no-CHH	no-CHH	.	.	.	.	.
Chr1	18987445	18987724	AT1TE62890	.	-	ATREP4	Helitron	RC	279	short	832	high	4183475	chromoarm	84	no-CHH	no-CHH	.	.	.	.	.
Chr1	18989487	18989659	AT1TE62895	.	-	BRODYAGA1A	MuDR	DNA	172	short	586	high	4185517	chromoarm	265	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	18989659	18989691	AT1TE62900	.	-	BRODYAGA1	MuDR	DNA	32	tiny	251	high	4185689	chromoarm	233	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	18990468	18990709	AT1TE62905	.	-	ATREP15	Helitron	RC	241	short	1003	high	4186498	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	18994616	18995469	AT1TE62915	.	-	ATCOPIA41	Copia	LTR	853	short	39	low	4190646	chromoarm	1587	no-CHH	no-CHH	.	.	.	.	.
Chr1	18995664	18995700	AT1TE62920	.	-	ATDNA2T9C	MuDR	DNA	36	tiny	242	high	4191694	chromoarm	1356	no-CHH	no-CHH	.	.	.	.	.
Chr1	18995700	18996099	AT1TE62925	.	+	BRODYAGA1	MuDR	DNA	399	short	251	high	4191730	chromoarm	957	no-CHH	no-CHH	.	.	.	.	.
Chr1	18998540	18998955	AT1TE62930	.	+	ATHPOGON1	Pogo	DNA	415	short	174	medium	4194570	chromoarm	1106	no-CHH	no-CHH	.	.	.	.	.
Chr1	18999513	18999947	AT1TE62935	.	+	ATREP1	Helitron	RC	434	short	498	high	4195543	chromoarm	561	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	19000898	19000931	AT1TE62940	.	+	HELITRONY1D	Helitron	RC	33	tiny	756	high	4196928	chromoarm	6	no-CHH	no-CHH	.	.	.	.	.
Chr1	19000931	19001024	AT1TE62945	.	-	BRODYAGA1	MuDR	DNA	93	tiny	251	high	4196961	chromoarm	39	no-CHH	no-CHH	.	.	.	.	.
Chr1	19001024	19001583	AT1TE62950	.	+	ATREP10B	Helitron	RC	559	short	491	high	4197054	chromoarm	132	no-CHH	no-CHH	.	.	.	.	.
Chr1	19001583	19001648	AT1TE62955	.	+	ATREP4	Helitron	RC	65	tiny	832	high	4197613	chromoarm	84	no-CHH	no-CHH	.	.	.	.	.
Chr1	19003176	19003344	AT1TE62960	.	+	ATCOPIA68	Copia	LTR	168	short	43	low	4199206	chromoarm	115	no-CHH	no-CHH	.	.	.	.	.
Chr1	19007005	19007427	AT1TE62970	.	+	BRODYAGA1A	MuDR	DNA	422	short	586	high	4203035	chromoarm	149	no-CHH	no-CHH	.	.	.	.	.
Chr1	19011247	19012135	AT1TE62980	.	-	ATREP10B	Helitron	RC	888	short	491	high	4207277	chromoarm	22	no-CHH	no-CHH	.	.	.	.	.
Chr1	19012135	19012168	AT1TE62985	.	-	ATREP9	Helitron	RC	33	tiny	201	high	4208165	chromoarm	4	no-CHH	no-CHH	.	.	.	.	.
Chr1	19017176	19017296	AT1TE62995	.	-	HELITRONY1D	Helitron	RC	120	short	756	high	4213206	chromoarm	1073	no-CHH	no-CHH	.	.	.	.	.
Chr1	19024086	19024128	AT1TE63010	.	-	ATREP3	Helitron	RC	42	tiny	1439	high	4220116	chromoarm	1513	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	19024128	19024148	AT1TE63015	.	-	ATREP3	Helitron	RC	20	tiny	1439	high	4220158	chromoarm	1493	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	19024148	19024606	AT1TE63020	.	+	ATREP10D	Helitron	RC	458	short	1295	high	4220178	chromoarm	1035	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	19024607	19025646	AT1TE63025	.	+	ATREP10B	Helitron	RC	1040	short	491	high	4220636	chromoarm	0	.	.	.	.	.	.	.
Chr1	19026856	19027896	AT1TE63030	.	+	HELITRONY3	Helitron	RC	1040	short	1399	high	4222886	chromoarm	87	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	19027928	19028033	AT1TE63035	.	+	ATREP9	Helitron	RC	105	short	201	high	4223958	chromoarm	807	no-CHH	no-CHH	.	.	.	.	.
Chr1	19028033	19028064	AT1TE63040	.	-	BRODYAGA2	MuDR	DNA	31	tiny	525	high	4224063	chromoarm	776	no-CHH	no-CHH	.	.	.	.	.
Chr1	19028064	19028807	AT1TE63045	.	-	HELITRONY1E	Helitron	RC	743	short	447	high	4224094	chromoarm	33	no-CHH	no-CHH	.	.	.	.	.
Chr1	19030077	19030213	AT1TE63050	.	-	HELITRONY3	Helitron	RC	136	short	1399	high	4226107	chromoarm	233	no-CHH	no-CHH	.	.	.	.	.
Chr1	19030213	19030245	AT1TE63055	.	+	ATREP11	Helitron	RC	32	tiny	841	high	4226243	chromoarm	369	no-CHH	no-CHH	.	.	.	.	.
Chr1	19030245	19031195	AT1TE63060	.	+	ATREP4	Helitron	RC	950	short	832	high	4226275	chromoarm	401	no-CHH	no-CHH	.	.	.	.	.
Chr1	19035142	19035559	AT1TE63070	.	+	BRODYAGA1	MuDR	DNA	417	short	251	high	4231172	chromoarm	291	no-CHH	no-CHH	.	.	.	.	.
Chr1	19053684	19053992	AT1TE63130	.	+	ATREP10D	Helitron	RC	308	short	1295	high	4249714	chromoarm	322	no-CHH	no-CHH	ExpressedAndAnnotated	19053739	19053203	-	transcript_id-"92e73a1e-5a3b-47de-ab54-7e87478e431e|14"
Chr1	19053992	19054422	AT1TE63135	.	-	ATREP6	Helitron	RC	430	short	181	medium	4250022	chromoarm	630	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	19054422	19056104	AT1TE63140	.	+	ATREP6	Helitron	RC	1682	short	181	medium	4250452	chromoarm	1060	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	19056104	19056564	AT1TE63145	.	+	ATREP8	Helitron	RC	460	short	75	medium	4252134	chromoarm	1215	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	19056564	19057234	AT1TE63150	.	+	ATREP3	Helitron	RC	670	short	1439	high	4252594	chromoarm	545	no-CHH	no-CHH	.	.	.	.	.
Chr1	19057234	19057338	AT1TE63155	.	+	ATREP10D	Helitron	RC	104	short	1295	high	4253264	chromoarm	441	no-CHH	no-CHH	.	.	.	.	.
Chr1	19061434	19061527	AT1TE63165	.	-	ATREP15	Helitron	RC	93	tiny	1003	high	4257464	chromoarm	10	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	19061527	19064852	AT1TE63170	.	+	ATREP3	Helitron	RC	3325	medium	1439	high	4257557	chromoarm	0	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	19064784	19064813	AT1TE63175	.	-	ATREP3	Helitron	RC	29	tiny	1439	high	4260814	chromoarm	38	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	19067010	19067687	AT1TE63180	.	+	ATHPOGON3	Pogo	DNA	677	short	118	medium	4263040	chromoarm	306	no-CHH	no-CHH	.	.	.	.	.
Chr1	19073025	19073193	AT1TE63190	.	+	ATCOPIA96	Copia	LTR	168	short	16	low	4269055	chromoarm	471	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	19073477	19073610	AT1TE63195	.	+	ATMUN1	MuDR	DNA	133	short	107	medium	4269507	chromoarm	788	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	19073839	19074204	AT1TE63200	.	+	BRODYAGA2	MuDR	DNA	365	short	525	high	4269869	chromoarm	194	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	19084434	19084510	AT1TE63230	.	+	HELITRONY1A	Helitron	RC	76	tiny	271	high	4280464	chromoarm	2913	no-CHH	no-CHH	.	.	.	.	.
Chr1	19084510	19084553	AT1TE63235	.	+	HELITRONY1D	Helitron	RC	43	tiny	756	high	4280540	chromoarm	2870	no-CHH	no-CHH	.	.	.	.	.
Chr1	19084553	19086291	AT1TE63240	.	+	ATREP3	Helitron	RC	1738	short	1439	high	4280583	chromoarm	1132	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	19086291	19086335	AT1TE63245	.	+	ATREP3	Helitron	RC	44	tiny	1439	high	4282321	chromoarm	1088	no-CHH	no-CHH	.	.	.	.	.
Chr1	19086336	19086473	AT1TE63250	.	-	ATHATN7	HAT	DNA	138	short	71	medium	4282365	chromoarm	950	.	.	.	.	.	.	.
Chr1	19086473	19087248	AT1TE63255	.	+	ATREP3	Helitron	RC	775	short	1439	high	4282503	chromoarm	175	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	19145623	19146253	AT1TE63440	.	-	HELITRON2	Helitron	RC	630	short	194	medium	4341653	chromoarm	1541	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	19146253	19146666	AT1TE63445	.	+	HELITRONY1D	Helitron	RC	413	short	756	high	4342283	chromoarm	2171	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	19146666	19146852	AT1TE63450	.	+	BRODYAGA1	MuDR	DNA	186	short	251	high	4342696	chromoarm	2584	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	19147564	19147602	AT1TE63455	.	-	ATREP15	Helitron	RC	38	tiny	1003	high	4343594	chromoarm	2259	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	19147602	19148627	AT1TE63460	.	-	HELITRON2	Helitron	RC	1025	short	194	medium	4343632	chromoarm	1234	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	19156172	19156474	AT1TE63480	.	+	ATCOPIA48	Copia	LTR	302	short	15	low	4352202	chromoarm	497	no-CHH	no-CHH	.	.	.	.	.
Chr1	19161779	19162251	AT1TE63490	.	+	ATCOPIA28	Copia	LTR	472	short	81	medium	4357809	chromoarm	315	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	19162251	19162295	AT1TE63495	.	-	BRODYAGA2	MuDR	DNA	44	tiny	525	high	4358281	chromoarm	787	no-CHH	no-CHH	.	.	.	.	.
Chr1	19171249	19171618	AT1TE63520	.	-	BRODYAGA2	MuDR	DNA	369	short	525	high	4367279	chromoarm	1275	no-RdDM	no-CHH	.	.	.	.	.
Chr1	19171977	19173840	AT1TE63525	.	-	ATREP3	Helitron	RC	1863	short	1439	high	4368007	chromoarm	425	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	19172429	19172980	AT1TE63530	.	+	ATHATN7	HAT	DNA	551	short	71	medium	4368459	chromoarm	1285	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	19173840	19173897	AT1TE63535	.	-	ATREP3	Helitron	RC	57	tiny	1439	high	4369870	chromoarm	368	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	19173897	19174105	AT1TE63540	.	+	HELITRONY3	Helitron	RC	208	short	1399	high	4369927	chromoarm	160	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	19180203	19180740	AT1TE63560	.	-	HELITRONY1D	Helitron	RC	537	short	756	high	4376233	chromoarm	309	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	19195166	19197293	AT1TE63610	.	+	ATLINEIII	L1	LINE	2127	medium	196	medium	4391196	chromoarm	791	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	19198195	19198428	AT1TE63615	.	+	ATHATN8	HAT	DNA	233	short	15	low	4394225	chromoarm	1133	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	19212368	19212533	AT1TE63660	.	-	ATREP15	Helitron	RC	165	short	1003	high	4408398	chromoarm	1669	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	19212533	19213512	AT1TE63665	.	+	ATREP4	Helitron	RC	979	short	832	high	4408563	chromoarm	690	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	19218074	19218229	AT1TE63675	.	+	ATCOPIA96	Copia	LTR	155	short	16	low	4414104	chromoarm	241	no-CHH	no-CHH	.	.	.	.	.
Chr1	19219594	19220224	AT1TE63680	.	+	ATLINE1A	L1	LINE	630	short	289	high	4415624	chromoarm	962	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	19224214	19224882	AT1TE63690	.	+	HELITRONY3	Helitron	RC	668	short	1399	high	4420244	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	19231037	19231112	AT1TE63710	.	-	ATREP4	Helitron	RC	75	tiny	832	high	4427067	chromoarm	453	no-CHH	no-CHH	.	.	.	.	.
Chr1	19231112	19231979	AT1TE63715	.	-	ATREP3	Helitron	RC	867	short	1439	high	4427142	chromoarm	528	no-CHH	no-CHH	.	.	.	.	.
Chr1	19231979	19232107	AT1TE63720	.	-	ATREP10D	Helitron	RC	128	short	1295	high	4428009	chromoarm	1395	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	19233202	19233275	AT1TE63725	.	+	ATLINE2	L1	LINE	73	tiny	138	medium	4429232	chromoarm	2618	no-CHH	no-CHH	.	.	.	.	.
Chr1	19233922	19234058	AT1TE63730	.	-	RathE1_cons	.	RathE1_cons	136	short	213	high	4429952	chromoarm	3338	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	19234628	19236158	AT1TE63735	.	-	ATREP11	Helitron	RC	1530	short	841	high	4430658	chromoarm	1248	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	19236158	19236223	AT1TE63740	.	-	ATREP5	Helitron	RC	65	tiny	624	high	4432188	chromoarm	1183	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	19236618	19237400	AT1TE63745	.	-	HELITRONY3	Helitron	RC	782	short	1399	high	4432648	chromoarm	6	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	19240445	19240622	AT1TE63755	.	+	HELITRONY1B	Helitron	RC	177	short	414	high	4436475	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	19240622	19240970	AT1TE63760	.	+	ATTIRX1D	.	DNA	348	short	28	low	4436652	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	19240970	19241132	AT1TE63765	.	+	ATHPOGON3	Pogo	DNA	162	short	118	medium	4437000	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	19245980	19246008	AT1TE63775	.	-	ATREP4	Helitron	RC	28	tiny	832	high	4442010	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	19246008	19246091	AT1TE63780	.	-	ATREP15	Helitron	RC	83	tiny	1003	high	4442038	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	19246091	19247191	AT1TE63785	.	+	HELITRONY1E	Helitron	RC	1100	short	447	high	4442121	chromoarm	81	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	19247836	19249271	AT1TE63790	.	-	HELITRONY3	Helitron	RC	1435	short	1399	high	4443866	chromoarm	177	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	19250494	19250573	AT1TE63795	.	+	ATSINE4	.	SINE	79	tiny	98	medium	4446524	chromoarm	344	no-CHH	no-CHH	.	.	.	.	.
Chr1	19250983	19251572	AT1TE63800	.	+	ATREP4	Helitron	RC	589	short	832	high	4447013	chromoarm	833	no-CHH	no-CHH	.	.	.	.	.
Chr1	19251573	19251851	AT1TE63805	.	+	DT1	Mariner	DNA	279	short	123	medium	4447602	chromoarm	1112	.	.	.	.	.	.	.
Chr1	19251883	19252408	AT1TE63810	.	-	ATDNA12T3_2	.	DNA	525	short	660	high	4447913	chromoarm	555	no-CHH	no-CHH	.	.	.	.	.
Chr1	19267199	19267310	AT1TE63860	.	+	HELITRONY1B	Helitron	RC	111	short	414	high	4463229	chromoarm	198	no-CHH	no-CHH	.	.	.	.	.
Chr1	19267310	19267339	AT1TE63865	.	+	ATREP3	Helitron	RC	29	tiny	1439	high	4463340	chromoarm	309	no-CHH	no-CHH	.	.	.	.	.
Chr1	19267339	19268167	AT1TE63870	.	-	HELITRONY1B	Helitron	RC	828	short	414	high	4463369	chromoarm	338	no-CHH	no-CHH	.	.	.	.	.
Chr1	19268167	19268282	AT1TE63875	.	-	HELITRONY1D	Helitron	RC	115	short	756	high	4464197	chromoarm	1166	no-CHH	no-CHH	.	.	.	.	.
Chr1	19268282	19268543	AT1TE63880	.	+	ATMU10	MuDR	DNA	261	short	87	medium	4464312	chromoarm	1281	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	19268641	19268871	AT1TE63885	.	-	ATMU10	MuDR	DNA	230	short	87	medium	4464671	chromoarm	1321	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	19278912	19279516	AT1TE63910	.	-	ATREP5	Helitron	RC	604	short	624	high	4474942	chromoarm	367	no-CHH	no-CHH	.	.	.	.	.
Chr1	19283127	19283479	AT1TE63920	.	-	HELITRONY1B	Helitron	RC	352	short	414	high	4479157	chromoarm	232	no-CHH	no-CHH	.	.	.	.	.
Chr1	19283479	19284034	AT1TE63925	.	+	ATREP15	Helitron	RC	555	short	1003	high	4479509	chromoarm	242	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	19288859	19288998	AT1TE63935	.	-	ATREP3	Helitron	RC	139	short	1439	high	4484889	chromoarm	474	no-CHH	no-CHH	.	.	.	.	.
Chr1	19288998	19289591	AT1TE63940	.	-	HELITRONY3	Helitron	RC	593	short	1399	high	4485028	chromoarm	613	no-CHH	no-CHH	.	.	.	.	.
Chr1	19289591	19289652	AT1TE63945	.	+	ATDNA2T9A	MuDR	DNA	61	tiny	48	low	4485621	chromoarm	1206	no-CHH	no-CHH	.	.	.	.	.
Chr1	19291506	19292829	AT1TE63950	.	-	HELITRONY1B	Helitron	RC	1323	short	414	high	4487536	chromoarm	100	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	19292829	19292890	AT1TE63955	.	+	HELITRONY1E	Helitron	RC	61	tiny	447	high	4488859	chromoarm	39	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	19299173	19299793	AT1TE63970	.	-	HELITRONY1D	Helitron	RC	620	short	756	high	4495203	chromoarm	232	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	19301674	19301809	AT1TE63975	.	+	HELITRONY2	Helitron	RC	135	short	198	medium	4497704	chromoarm	2733	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	19303911	19304006	AT1TE63980	.	+	ATDNAI27T9A	MuDR	DNA	95	tiny	116	medium	4499941	chromoarm	1663	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	19308662	19308989	AT1TE63990	.	+	HELITRONY1D	Helitron	RC	327	short	756	high	4504692	chromoarm	1365	no-CHH	no-CHH	.	.	.	.	.
Chr1	19316277	19316439	AT1TE64010	.	+	HELITRONY3	Helitron	RC	163	short	1399	high	4512306	chromoarm	1360	.	.	.	.	.	.	.
Chr1	19316439	19317505	AT1TE64015	.	-	ATREP5	Helitron	RC	1066	short	624	high	4512469	chromoarm	1523	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	19317505	19317538	AT1TE64020	.	+	HELITRONY1B	Helitron	RC	33	tiny	414	high	4513535	chromoarm	2589	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	19317538	19317701	AT1TE64025	.	+	ATREP3	Helitron	RC	163	short	1439	high	4513568	chromoarm	2622	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	19326867	19327005	AT1TE64050	.	-	ATREP11A	Helitron	RC	138	short	95	medium	4522897	chromoarm	96	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	19327005	19329720	AT1TE64055	.	-	ATREP3	Helitron	RC	2715	medium	1439	high	4523035	chromoarm	234	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	19329720	19329838	AT1TE64060	.	+	HELITRONY1B	Helitron	RC	118	short	414	high	4525750	chromoarm	1110	no-CHH	no-CHH	.	.	.	.	.
Chr1	19329838	19330140	AT1TE64065	.	-	ATLINEIII	L1	LINE	302	short	196	medium	4525868	chromoarm	808	PolIV-and-RDR6-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	19330142	19330778	AT1TE64070	.	+	TNAT1A	.	DNA	636	short	162	medium	4526172	chromoarm	170	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	19336305	19345618	AT1TE64080	.	+	VANDAL2	MuDR	DNA	9313	long	43	low	4532335	chromoarm	471	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	19352802	19352907	AT1TE64100	.	-	ATN9_1	MuDR	DNA	105	short	65	medium	4548832	chromoarm	224	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	19352907	19353478	AT1TE64105	.	-	ATN9_1	MuDR	DNA	571	short	65	medium	4548937	chromoarm	329	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	19353478	19354354	AT1TE64110	.	-	ATREP10D	Helitron	RC	876	short	1295	high	4549508	chromoarm	751	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	19362971	19363144	AT1TE64140	.	+	RathE3_cons	.	RathE3_cons	173	short	104	medium	4559001	chromoarm	1995	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	19364214	19364372	AT1TE64145	.	+	HELITRONY1D	Helitron	RC	158	short	756	high	4560244	chromoarm	767	no-CHH	no-CHH	.	.	.	.	.
Chr1	19374608	19380747	AT1TE64170	.	-	VANDAL5	MuDR	DNA	6139	long	85	medium	4570638	chromoarm	2543	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	19380969	19380994	AT1TE64175	.	-	BRODYAGA1A	MuDR	DNA	25	tiny	586	high	4576999	chromoarm	2296	no-CHH	no-CHH	.	.	.	.	.
Chr1	19380994	19381516	AT1TE64180	.	+	HELITRONY1D	Helitron	RC	522	short	756	high	4577024	chromoarm	1774	no-CHH	no-CHH	.	.	.	.	.
Chr1	19382034	19383006	AT1TE64185	.	-	ATREP15	Helitron	RC	972	short	1003	high	4578064	chromoarm	284	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	19385771	19385868	AT1TE64190	.	-	META1	Copia	LTR	97	tiny	138	medium	4581801	chromoarm	648	no-CHH	no-CHH	.	.	.	.	.
Chr1	19385868	19386256	AT1TE64195	.	+	ATREP11	Helitron	RC	388	short	841	high	4581898	chromoarm	532	no-RdDM	no-CHH	.	.	.	.	.
Chr1	19386256	19386529	AT1TE64200	.	+	HELITRONY2	Helitron	RC	273	short	198	medium	4582286	chromoarm	259	no-CHH	no-CHH	.	.	.	.	.
Chr1	19388188	19388376	AT1TE64205	.	-	VANDAL2N1	MuDR	DNA	188	short	51	medium	4584218	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	19389527	19389869	AT1TE64210	.	-	ATSINE4	.	SINE	342	short	98	medium	4585557	chromoarm	0	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	19389869	19389931	AT1TE64215	.	-	ATSINE4	.	SINE	62	tiny	98	medium	4585899	chromoarm	129	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	19389976	19390404	AT1TE64220	.	+	ATREP1	Helitron	RC	428	short	498	high	4586006	chromoarm	236	no-CHH	no-CHH	.	.	.	.	.
Chr1	19390404	19390445	AT1TE64225	.	+	ARNOLDY2	MuDR	DNA	41	tiny	288	high	4586434	chromoarm	664	no-CHH	no-CHH	.	.	.	.	.
Chr1	19390445	19390480	AT1TE64230	.	-	ARNOLDY1	MuDR	DNA	35	tiny	237	high	4586475	chromoarm	705	no-CHH	no-CHH	.	.	.	.	.
Chr1	19391483	19391784	AT1TE64235	.	-	ATREP3	Helitron	RC	301	short	1439	high	4587513	chromoarm	1743	no-CHH	no-CHH	.	.	.	.	.
Chr1	19391784	19395117	AT1TE64240	.	-	ATREP4	Helitron	RC	3333	medium	832	high	4587814	chromoarm	1082	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	19395118	19395209	AT1TE64245	.	+	HELITRONY3	Helitron	RC	91	tiny	1399	high	4591148	chromoarm	990	no-RdDM	no-CHH	.	.	.	.	.
Chr1	19395209	19395565	AT1TE64250	.	+	ATREP15	Helitron	RC	356	short	1003	high	4591239	chromoarm	634	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	19395565	19395643	AT1TE64255	.	+	ATHATN1	HAT	DNA	78	tiny	69	medium	4591595	chromoarm	556	no-RdDM	no-CHH	.	.	.	.	.
Chr1	19399825	19400414	AT1TE64265	.	+	TAG3N1	HAT	DNA	589	short	97	medium	4595855	chromoarm	204	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	19403299	19403353	AT1TE64270	.	-	ATREP10A	Helitron	RC	54	tiny	279	high	4599329	chromoarm	936	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	19403368	19403645	AT1TE64275	.	-	ATREP10A	Helitron	RC	277	short	279	high	4599398	chromoarm	1005	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	19403933	19404711	AT1TE64280	.	+	TNAT2A	.	DNA	778	short	38	low	4599963	chromoarm	1570	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	19415245	19415392	AT1TE64310	.	-	RathE3_cons	.	RathE3_cons	147	short	104	medium	4611275	chromoarm	1284	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	19420033	19420288	AT1TE64320	.	+	HELITRONY3	Helitron	RC	255	short	1399	high	4616063	chromoarm	442	no-CHH	no-CHH	.	.	.	.	.
Chr1	19420288	19420950	AT1TE64325	.	+	ATREP15	Helitron	RC	662	short	1003	high	4616318	chromoarm	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	19426364	19426434	AT1TE64335	.	+	VANDALNX1	MuDR	DNA	70	tiny	14	low	4622394	chromoarm	436	no-CHH	RDR6-RdDM	.	.	.	.	.
Chr1	19426503	19427034	AT1TE64340	.	-	TNAT2A	.	DNA	531	short	38	low	4622533	chromoarm	575	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	19427034	19427207	AT1TE64345	.	+	ATREP11	Helitron	RC	173	short	841	high	4623064	chromoarm	1106	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	19428402	19428848	AT1TE64350	.	-	ATIS112A	Harbinger	DNA	446	short	173	medium	4624432	chromoarm	2474	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	19428932	19428517	-	transcript_id-"41efeaf8-26b3-481d-a412-11fb2470f681|4"
Chr1	19429179	19430131	AT1TE64355	.	-	ATREP10C	Helitron	RC	952	short	123	medium	4625209	chromoarm	3251	no-CHH	no-CHH	.	.	.	.	.
Chr1	19440610	19441151	AT1TE64380	.	-	ATREP10D	Helitron	RC	541	short	1295	high	4636640	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	19445902	19450693	AT1TE64390	.	+	ATCOPIA94	Copia	LTR	4791	medium	39	low	4641932	chromoarm	2495	no-CHH	no-CHH	.	.	.	.	.
Chr1	19463587	19463886	AT1TE64430	.	-	ATCOPIA57	Copia	LTR	299	short	48	low	4659617	chromoarm	26	no-CHH	no-CHH	.	.	.	.	.
Chr1	19464946	19465090	AT1TE64435	.	-	ATREP15	Helitron	RC	144	short	1003	high	4660976	chromoarm	647	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr1	19465090	19465122	AT1TE64440	.	-	ATREP3	Helitron	RC	32	tiny	1439	high	4661120	chromoarm	791	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	19465122	19467623	AT1TE64445	.	-	ATREP3	Helitron	RC	2501	medium	1439	high	4661152	chromoarm	526	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	19467623	19467675	AT1TE64450	.	-	BRODYAGA1A	MuDR	DNA	52	tiny	586	high	4663653	chromoarm	474	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	19467675	19467860	AT1TE64455	.	+	ATREP10D	Helitron	RC	185	short	1295	high	4663705	chromoarm	289	no-CHH	no-CHH	.	.	.	.	.
Chr1	19472582	19473236	AT1TE64465	.	+	HELITRONY3	Helitron	RC	654	short	1399	high	4668612	chromoarm	220	no-CHH	no-CHH	.	.	.	.	.
Chr1	19473236	19473400	AT1TE64470	.	+	ATREP11	Helitron	RC	164	short	841	high	4669266	chromoarm	874	no-CHH	no-CHH	.	.	.	.	.
Chr1	19476546	19476625	AT1TE64480	.	+	ATLINE1A	L1	LINE	80	tiny	289	high	4672575	chromoarm	393	.	.	.	.	.	.	.
Chr1	19482698	19483197	AT1TE64490	.	-	ATREP15	Helitron	RC	499	short	1003	high	4678728	chromoarm	24	no-CHH	no-CHH	.	.	.	.	.
Chr1	19483197	19483984	AT1TE64495	.	+	ATN9_1	MuDR	DNA	787	short	65	medium	4679227	chromoarm	436	no-CHH	no-CHH	.	.	.	.	.
Chr1	19483984	19484313	AT1TE64500	.	+	HELITRONY1E	Helitron	RC	329	short	447	high	4680014	chromoarm	107	no-CHH	no-CHH	.	.	.	.	.
Chr1	19484519	19484802	AT1TE64505	.	+	ATENSPM1A	En-Spm	DNA	283	short	77	medium	4680549	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	19513349	19514361	AT1TE64590	.	+	ATREP4	Helitron	RC	1012	short	832	high	4709379	chromoarm	888	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	19526801	19527727	AT1TE64630	.	+	ATREP11	Helitron	RC	926	short	841	high	4722831	chromoarm	115	no-CHH	no-CHH	.	.	.	.	.
Chr1	19533678	19533765	AT1TE64640	.	+	HELITRON5	Helitron	RC	87	tiny	56	medium	4729708	chromoarm	0	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	19536435	19536766	AT1TE64645	.	+	BRODYAGA1	MuDR	DNA	331	short	251	high	4732465	chromoarm	480	no-CHH	no-CHH	.	.	.	.	.
Chr1	19544013	19544099	AT1TE64660	.	+	HELITRON5	Helitron	RC	86	tiny	56	medium	4740043	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	19546754	19547208	AT1TE64665	.	+	HELITRONY3	Helitron	RC	454	short	1399	high	4742784	chromoarm	488	no-CHH	no-CHH	.	.	.	.	.
Chr1	19562577	19562758	AT1TE64710	.	+	ATMU10	MuDR	DNA	181	short	87	medium	4758607	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	19573998	19574741	AT1TE64750	.	+	HELITRONY3	Helitron	RC	743	short	1399	high	4770028	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	19575218	19575465	AT1TE64755	.	+	ATDNA2T9C	MuDR	DNA	247	short	242	high	4771248	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	19576737	19577061	AT1TE64760	.	+	HELITRONY1B	Helitron	RC	324	short	414	high	4772767	chromoarm	971	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	19593687	19593888	AT1TE64810	.	-	ATHILA4B_LTR	Gypsy	LTR	201	short	143	medium	4789717	chromoarm	1201	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	19593888	19593931	AT1TE64815	.	+	ATREP11	Helitron	RC	43	tiny	841	high	4789918	chromoarm	1402	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	19593931	19594786	AT1TE64820	.	-	HELITRONY1A	Helitron	RC	855	short	271	high	4789961	chromoarm	1445	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	19595437	19597361	AT1TE64825	.	-	ATMU1	MuDR	DNA	1924	short	59	medium	4791467	chromoarm	2951	no-RdDM	no-RdDM	ExpressedAndAnnotated	19599682,19596616	19596369,19596407	-,-	transcript_id-"5cfbf8a0-923d-445d-922e-a9b47fd57a59|3",transcript_id-"d48d33e8-fd9f-4e54-9d4e-b16db4cc91ff|3"
Chr1	19597361	19599971	AT1TE64830	.	-	ATMU2	MuDR	DNA	2610	medium	64	medium	4793391	chromoarm	3275	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	19599682	19596369	-	transcript_id-"5cfbf8a0-923d-445d-922e-a9b47fd57a59|3"
Chr1	19617677	19617976	AT1TE64890	.	+	BRODYAGA1A	MuDR	DNA	299	short	586	high	4813707	chromoarm	257	no-CHH	no-CHH	.	.	.	.	.
Chr1	19623283	19623490	AT1TE64900	.	-	ATREP10D	Helitron	RC	207	short	1295	high	4819313	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	19623490	19624732	AT1TE64905	.	+	ATREP10D	Helitron	RC	1242	short	1295	high	4819520	chromoarm	102	no-CHH	no-CHH	.	.	.	.	.
Chr1	19624732	19624777	AT1TE64910	.	+	ATREP10B	Helitron	RC	45	tiny	491	high	4820762	chromoarm	1344	no-CHH	no-CHH	.	.	.	.	.
Chr1	19626931	19627642	AT1TE64915	.	+	ATREP4	Helitron	RC	711	short	832	high	4822961	chromoarm	3543	no-CHH	no-CHH	.	.	.	.	.
Chr1	19627642	19627694	AT1TE64920	.	-	ATREP10C	Helitron	RC	52	tiny	123	medium	4823672	chromoarm	3491	no-CHH	no-CHH	.	.	.	.	.
Chr1	19630232	19630260	AT1TE64925	.	+	BRODYAGA1A	MuDR	DNA	28	tiny	586	high	4826262	chromoarm	925	no-CHH	no-CHH	.	.	.	.	.
Chr1	19630260	19630861	AT1TE64930	.	+	ATREP11	Helitron	RC	601	short	841	high	4826290	chromoarm	324	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	19634429	19636005	AT1TE64940	.	+	HELITRONY3	Helitron	RC	1576	short	1399	high	4830459	chromoarm	1063	no-CHH	no-CHH	.	.	.	.	.
Chr1	19636161	19636319	AT1TE64945	.	+	HELITRONY2	Helitron	RC	158	short	198	medium	4832191	chromoarm	2307	no-CHH	no-CHH	.	.	.	.	.
Chr1	19636319	19636343	AT1TE64950	.	-	HELITRONY1D	Helitron	RC	24	tiny	756	high	4832349	chromoarm	2283	no-CHH	no-CHH	.	.	.	.	.
Chr1	19649522	19650350	AT1TE64990	.	+	HELITRON2	Helitron	RC	828	short	194	medium	4845552	chromoarm	314	no-CHH	no-CHH	.	.	.	.	.
Chr1	19650651	19651289	AT1TE64995	.	-	ATREP10D	Helitron	RC	638	short	1295	high	4846681	chromoarm	88	no-CHH	no-CHH	.	.	.	.	.
Chr1	19654970	19655716	AT1TE65005	.	-	ATREP3	Helitron	RC	746	short	1439	high	4851000	chromoarm	292	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	19658202	19658582	AT1TE65010	.	+	ATREP10B	Helitron	RC	380	short	491	high	4854232	chromoarm	263	no-CHH	no-CHH	.	.	.	.	.
Chr1	19665948	19666845	AT1TE65030	.	+	ATREP11	Helitron	RC	897	short	841	high	4861978	chromoarm	281	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	19675548	19680353	AT1TE65060	.	+	ATENSPM4	En-Spm	DNA	4805	medium	50	medium	4871578	chromoarm	1066	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	19676791,19676791	19679910,19679910	+,+	transcript_id-"007c18c4-ae16-4d54-9e58-28b02c7580cd|91",transcript_id-"fe7d6a84-2bc2-4642-a15c-ed09f7eba435|25"
Chr1	19682346	19683118	AT1TE65065	.	+	HELITRONY1B	Helitron	RC	772	short	414	high	4878376	chromoarm	18	no-CHH	no-CHH	.	.	.	.	.
Chr1	19688609	19688768	AT1TE65075	.	-	ATLINE1_3A	L1	LINE	159	short	160	medium	4884639	chromoarm	516	no-CHH	no-CHH	.	.	.	.	.
Chr1	19691498	19693591	AT1TE65080	.	-	HELITRONY3	Helitron	RC	2093	medium	1399	high	4887528	chromoarm	1068	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	19693216	19693478	AT1TE65085	.	-	DT1	Mariner	DNA	262	short	123	medium	4889246	chromoarm	2786	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	19699856	19700363	AT1TE65100	.	-	HELITRONY1B	Helitron	RC	507	short	414	high	4895886	chromoarm	1412	no-CHH	no-CHH	.	.	.	.	.
Chr1	19700964	19701109	AT1TE65105	.	+	RathE2_cons	.	RathE2_cons	145	short	74	medium	4896994	chromoarm	1101	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	19703140	19704372	AT1TE65110	.	+	ATREP11	Helitron	RC	1232	short	841	high	4899170	chromoarm	224	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	19704372	19705615	AT1TE65115	.	+	ATREP3	Helitron	RC	1243	short	1439	high	4900402	chromoarm	614	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	19705881	19706850	AT1TE65120	.	-	HELITRON1	Helitron	RC	969	short	130	medium	4901911	chromoarm	0	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	19714706	19714878	AT1TE65150	.	-	RathE3_cons	.	RathE3_cons	172	short	104	medium	4910736	chromoarm	1523	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	19716392	19716455	AT1TE65155	.	+	HELITRONY1E	Helitron	RC	63	tiny	447	high	4912422	chromoarm	0	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	19716455	19719259	AT1TE65160	.	+	ATREP10D	Helitron	RC	2804	medium	1295	high	4912485	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	19717820	19718604	AT1TE65165	.	+	ATREP2A	Helitron	RC	784	short	116	medium	4913850	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	19719259	19719377	AT1TE65170	.	+	ATREP5	Helitron	RC	118	short	624	high	4915289	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	19719377	19720657	AT1TE65175	.	-	HELITRONY3	Helitron	RC	1280	short	1399	high	4915407	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	19724638	19725068	AT1TE65185	.	+	BRODYAGA1A	MuDR	DNA	430	short	586	high	4920668	chromoarm	414	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	19725300	19725496	AT1TE65190	.	+	HELITRON1	Helitron	RC	196	short	130	medium	4921330	chromoarm	0	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	19725496	19725521	AT1TE65195	.	+	HELITRONY2	Helitron	RC	25	tiny	198	medium	4921526	chromoarm	0	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	19725521	19726017	AT1TE65200	.	+	HELITRON4	Helitron	RC	496	short	199	medium	4921551	chromoarm	0	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	19726017	19735182	AT1TE65205	.	+	HELITRON2	Helitron	RC	9165	long	194	medium	4922047	chromoarm	0	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	19728520	19730000	AT1TE65210	.	+	ATDNA2T9B	MuDR	DNA	1480	short	26	low	4924550	chromoarm	513	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	19730000	19730068	AT1TE65215	.	+	ATDNA2T9B	MuDR	DNA	68	tiny	26	low	4926030	chromoarm	1993	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	19731726	19731887	AT1TE65220	.	+	HELITRON3	Helitron	RC	161	short	53	medium	4927756	chromoarm	3719	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	19731889	19732662	AT1TE65225	.	+	HELITRON1	Helitron	RC	773	short	130	medium	4927919	chromoarm	3882	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	19735258	19735346	AT1TE65230	.	+	HELITRON2	Helitron	RC	88	tiny	194	medium	4931288	chromoarm	1287	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	19736159	19736534	AT1TE65235	.	+	ATREP19	.	DNA	376	short	189	medium	4932188	chromoarm	99	.	.	.	.	.	.	.
Chr1	19736535	19736645	AT1TE65240	.	+	ATREP5	Helitron	RC	111	short	624	high	4932564	chromoarm	0	.	.	.	.	.	.	.
Chr1	19741471	19742139	AT1TE65250	.	-	ATREP2A	Helitron	RC	668	short	116	medium	4937501	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	19743665	19744386	AT1TE65255	.	-	ATHATN6	HAT	DNA	721	short	43	low	4939695	chromoarm	216	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	19744791	19744922	AT1TE65260	.	+	TNAT1A	.	DNA	131	short	162	medium	4940821	chromoarm	407	no-CHH	no-CHH	.	.	.	.	.
Chr1	19744922	19744946	AT1TE65265	.	-	TNAT1A	.	DNA	24	tiny	162	medium	4940952	chromoarm	383	no-CHH	no-CHH	.	.	.	.	.
Chr1	19749169	19749249	AT1TE65275	.	-	HELITRONY3	Helitron	RC	80	tiny	1399	high	4945199	chromoarm	786	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	19749259	19749851	AT1TE65280	.	+	ATREP5	Helitron	RC	592	short	624	high	4945289	chromoarm	876	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	19753076	19753449	AT1TE65290	.	-	BRODYAGA1A	MuDR	DNA	373	short	586	high	4949106	chromoarm	764	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	19753449	19753506	AT1TE65295	.	+	BRODYAGA1A	MuDR	DNA	57	tiny	586	high	4949479	chromoarm	707	no-CHH	no-CHH	.	.	.	.	.
Chr1	19762512	19762551	AT1TE65320	.	+	ATREP11	Helitron	RC	39	tiny	841	high	4958542	chromoarm	194	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	19762551	19762699	AT1TE65325	.	-	ATREP15	Helitron	RC	148	short	1003	high	4958581	chromoarm	233	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	19762699	19763826	AT1TE65330	.	+	ATREP15	Helitron	RC	1127	short	1003	high	4958729	chromoarm	253	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	19763826	19763965	AT1TE65335	.	+	ATREP10A	Helitron	RC	139	short	279	high	4959856	chromoarm	114	no-CHH	no-CHH	.	.	.	.	.
Chr1	19767516	19767668	AT1TE65345	.	-	ATREP11	Helitron	RC	152	short	841	high	4963546	chromoarm	646	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	19767668	19767725	AT1TE65350	.	-	ATREP11	Helitron	RC	57	tiny	841	high	4963698	chromoarm	798	no-CHH	no-CHH	.	.	.	.	.
Chr1	19767725	19767862	AT1TE65355	.	-	ATREP3	Helitron	RC	137	short	1439	high	4963755	chromoarm	855	no-CHH	no-CHH	.	.	.	.	.
Chr1	19767862	19769832	AT1TE65360	.	-	ATREP3	Helitron	RC	1970	short	1439	high	4963892	chromoarm	992	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	19769025	19769639	AT1TE65365	.	+	ATREP2	Helitron	RC	614	short	164	medium	4965055	chromoarm	2155	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	19769832	19769960	AT1TE65370	.	-	ATREP11	Helitron	RC	128	short	841	high	4965862	chromoarm	2613	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	19770792	19771186	AT1TE65375	.	-	ATREP10B	Helitron	RC	394	short	491	high	4966822	chromoarm	1387	no-CHH	no-CHH	.	.	.	.	.
Chr1	19771186	19771989	AT1TE65380	.	-	ATREP3	Helitron	RC	803	short	1439	high	4967216	chromoarm	584	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	19773333	19773782	AT1TE65385	.	-	ATMU6N1	MuDR	DNA	449	short	39	low	4969363	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	19777409	19777435	AT1TE65395	.	-	HELITRONY1A	Helitron	RC	26	tiny	271	high	4973439	chromoarm	629	no-CHH	no-CHH	.	.	.	.	.
Chr1	19777435	19778145	AT1TE65400	.	-	ATREP3	Helitron	RC	710	short	1439	high	4973465	chromoarm	225	no-CHH	no-CHH	.	.	.	.	.
Chr1	19808115	19810029	AT1TE65500	.	+	ATDNAI27T9C	MuDR	DNA	1914	short	108	medium	5004145	chromoarm	1035	PolIV-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	19809842	19806082	-	transcript_id-"468755eb-e163-41c1-84cf-735155fc4b06|3"
Chr1	19812617	19812734	AT1TE65505	.	+	RathE1_cons	.	RathE1_cons	117	short	213	high	5008647	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	19822277	19822379	AT1TE65530	.	-	ATREP10D	Helitron	RC	102	short	1295	high	5018307	chromoarm	181	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	19822379	19824568	AT1TE65535	.	+	HELITRONY3	Helitron	RC	2189	medium	1399	high	5018409	chromoarm	283	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	19857262	19857632	AT1TE65640	.	-	LIMPET1	MuDR	DNA	370	short	116	medium	5053292	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	19868309	19869213	AT1TE65680	.	-	ATREP3	Helitron	RC	904	short	1439	high	5064339	chromoarm	0	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	19869213	19870090	AT1TE65685	.	-	ATREP10D	Helitron	RC	877	short	1295	high	5065243	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	19870090	19871188	AT1TE65690	.	+	ATREP3	Helitron	RC	1098	short	1439	high	5066120	chromoarm	14	no-CHH	no-CHH	.	.	.	.	.
Chr1	19874971	19875199	AT1TE65700	.	+	ATHATN2	HAT	DNA	228	short	46	low	5071001	chromoarm	1720	no-CHH	no-CHH	.	.	.	.	.
Chr1	19876057	19876222	AT1TE65705	.	+	ATHAT1	HAT	DNA	165	short	105	medium	5072087	chromoarm	2806	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	19876247	19877040	AT1TE65710	.	+	ATREP15	Helitron	RC	793	short	1003	high	5072277	chromoarm	2685	no-CHH	no-CHH	.	.	.	.	.
Chr1	19879048	19879398	AT1TE65715	.	-	ATREP11	Helitron	RC	350	short	841	high	5075078	chromoarm	327	no-CHH	no-CHH	.	.	.	.	.
Chr1	19888515	19889200	AT1TE65740	.	+	ATREP4	Helitron	RC	685	short	832	high	5084545	chromoarm	445	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	19901339	19901482	AT1TE65780	.	-	ATCOPIA48	Copia	LTR	143	short	15	low	5097369	chromoarm	408	no-CHH	no-CHH	.	.	.	.	.
Chr1	19901539	19902369	AT1TE65785	.	+	ATREP15	Helitron	RC	830	short	1003	high	5097569	chromoarm	191	no-CHH	no-CHH	.	.	.	.	.
Chr1	19901891	19902279	AT1TE65790	.	+	ATREP5	Helitron	RC	388	short	624	high	5097921	chromoarm	281	no-CHH	no-CHH	.	.	.	.	.
Chr1	19908864	19909195	AT1TE65810	.	-	ATTIR16T3A	.	DNA	331	short	106	medium	5104894	chromoarm	316	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	19909341	19909540	AT1TE65815	.	+	ATLINE1_1	L1	LINE	199	short	61	medium	5105371	chromoarm	299	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	19909540	19909695	AT1TE65820	.	-	ATTIR16T3A	.	DNA	155	short	106	medium	5105570	chromoarm	144	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	19917246	19918014	AT1TE65840	.	-	ATREP4	Helitron	RC	768	short	832	high	5113276	chromoarm	182	no-CHH	no-CHH	.	.	.	.	.
Chr1	19918014	19918045	AT1TE65845	.	-	ATREP11	Helitron	RC	31	tiny	841	high	5114044	chromoarm	151	no-CHH	no-CHH	.	.	.	.	.
Chr1	19923735	19924547	AT1TE65855	.	+	HELITRONY3	Helitron	RC	812	short	1399	high	5119765	chromoarm	156	no-CHH	no-CHH	.	.	.	.	.
Chr1	19924547	19924571	AT1TE65860	.	-	ATREP10B	Helitron	RC	24	tiny	491	high	5120577	chromoarm	437	no-CHH	no-CHH	.	.	.	.	.
Chr1	19931721	19931969	AT1TE65880	.	-	HELITRONY3	Helitron	RC	248	short	1399	high	5127751	chromoarm	227	no-CHH	no-CHH	.	.	.	.	.
Chr1	19931969	19934270	AT1TE65885	.	+	HELITRONY3	Helitron	RC	2301	medium	1399	high	5127999	chromoarm	475	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	19933046	19933103	AT1TE65890	.	-	ATREP10B	Helitron	RC	57	tiny	491	high	5129076	chromoarm	1552	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	19933104	19933518	AT1TE65895	.	-	ATIS112A	Harbinger	DNA	415	short	173	medium	5129133	chromoarm	1609	.	.	.	.	.	.	.
Chr1	19933636	19933732	AT1TE65900	.	-	ATREP10D	Helitron	RC	96	tiny	1295	high	5129666	chromoarm	1565	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	19941184	19941382	AT1TE65920	.	+	ATREP4	Helitron	RC	198	short	832	high	5137214	chromoarm	225	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	19941384	19945434	AT1TE65925	.	+	HELITRONY3	Helitron	RC	4050	medium	1399	high	5137414	chromoarm	425	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	19945434	19945687	AT1TE65930	.	-	HELITRONY3	Helitron	RC	253	short	1399	high	5141464	chromoarm	271	no-CHH	no-CHH	.	.	.	.	.
Chr1	19945687	19945811	AT1TE65935	.	-	ATREP10D	Helitron	RC	124	short	1295	high	5141717	chromoarm	147	no-CHH	no-CHH	.	.	.	.	.
Chr1	19961743	19962050	AT1TE65980	.	-	ATREP9	Helitron	RC	307	short	201	high	5157773	chromoarm	165	no-CHH	no-CHH	.	.	.	.	.
Chr1	19986877	19987036	AT1TE66060	.	-	ATHPOGON1	Pogo	DNA	159	short	174	medium	5182907	chromoarm	354	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	19993528	19993664	AT1TE66080	.	-	ATREP2A	Helitron	RC	136	short	116	medium	5189558	chromoarm	278	no-CHH	no-CHH	.	.	.	.	.
Chr1	19993664	19993686	AT1TE66085	.	-	ATREP3	Helitron	RC	22	tiny	1439	high	5189694	chromoarm	414	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	19993686	19995733	AT1TE66090	.	-	ATREP3	Helitron	RC	2047	medium	1439	high	5189716	chromoarm	436	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	19995750	19996179	AT1TE66095	.	-	ATREP3	Helitron	RC	429	short	1439	high	5191780	chromoarm	376	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	20004935	20005076	AT1TE66120	.	-	VANDAL1	MuDR	DNA	141	short	80	medium	5200965	chromoarm	1519	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	20005239	20005713	AT1TE66125	.	+	HELITRONY1D	Helitron	RC	474	short	756	high	5201269	chromoarm	1823	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	20013652	20013832	AT1TE66150	.	-	RathE3_cons	.	RathE3_cons	180	short	104	medium	5209682	chromoarm	712	no-CHH	no-CHH	.	.	.	.	.
Chr1	20014002	20014512	AT1TE66155	.	+	ATREP10D	Helitron	RC	510	short	1295	high	5210032	chromoarm	32	no-CHH	no-CHH	.	.	.	.	.
Chr1	20016266	20016860	AT1TE66160	.	-	ATLINE1_5	L1	LINE	594	short	91	medium	5212296	chromoarm	643	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	20016860	20017327	AT1TE66165	.	-	ATLINE1_4	L1	LINE	467	short	102	medium	5212890	chromoarm	176	no-CHH	no-CHH	.	.	.	.	.
Chr1	20042309	20042418	AT1TE66240	.	-	ATDNAI27T9A	MuDR	DNA	109	short	116	medium	5238339	chromoarm	280	no-CHH	no-CHH	.	.	.	.	.
Chr1	20044023	20045029	AT1TE66245	.	-	ATREP15	Helitron	RC	1006	short	1003	high	5240053	chromoarm	679	no-CHH	no-CHH	.	.	.	.	.
Chr1	20045928	20046204	AT1TE66250	.	+	ATREP3	Helitron	RC	276	short	1439	high	5241958	chromoarm	2399	no-CHH	no-CHH	.	.	.	.	.
Chr1	20085178	20090143	AT1TE66380	.	+	ATCOPIA48	Copia	LTR	4965	medium	15	low	5281208	chromoarm	105	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	20085271,20085402	20085523,20087259	+,+	transcript_id-"42433187-66cb-4338-91ab-59e7c1a06da9|3",transcript_id-"4d3d5709-f9b0-424f-990d-62b86059c543|5"
Chr1	20090144	20090227	AT1TE66385	.	+	ATCOPIA8A	Copia	LTR	84	tiny	12	low	5286173	chromoarm	21	.	.	LowExpressed	.	.	.	.
Chr1	20090227	20090251	AT1TE66390	.	+	ATCOPIA8B	Copia	LTR	24	tiny	8	low	5286257	chromoarm	0	DCL3-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	20093805	20093926	AT1TE66400	.	-	HELITRONY1D	Helitron	RC	121	short	756	high	5289835	chromoarm	1382	no-CHH	no-CHH	.	.	.	.	.
Chr1	20095310	20096007	AT1TE66405	.	-	ATREP15	Helitron	RC	697	short	1003	high	5291340	chromoarm	2554	no-CHH	no-CHH	.	.	.	.	.
Chr1	20096007	20098115	AT1TE66410	.	-	HELITRONY1B	Helitron	RC	2108	medium	414	high	5292037	chromoarm	446	no-CHH	no-CHH	.	.	.	.	.
Chr1	20118812	20118982	AT1TE66480	.	-	ATTIRTA1	Tc1	DNA	171	short	95	medium	5314841	chromoarm	542	.	.	.	.	.	.	.
Chr1	20121437	20121608	AT1TE66485	.	+	BRODYAGA1A	MuDR	DNA	172	short	586	high	5317466	chromoarm	1004	.	.	.	.	.	.	.
Chr1	20131377	20131547	AT1TE66510	.	-	ATTIRTA1	Tc1	DNA	171	short	95	medium	5327406	chromoarm	542	.	.	.	.	.	.	.
Chr1	20134002	20134173	AT1TE66515	.	+	BRODYAGA1A	MuDR	DNA	172	short	586	high	5330031	chromoarm	1068	.	.	.	.	.	.	.
Chr1	20153633	20154352	AT1TE66570	.	+	ATREP15	Helitron	RC	719	short	1003	high	5349663	chromoarm	195	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	20154053	20154314	AT1TE66575	.	+	DT1	Mariner	DNA	261	short	123	medium	5350083	chromoarm	233	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	20157000	20157039	AT1TE66580	.	-	ATHPOGON3	Pogo	DNA	39	tiny	118	medium	5353030	chromoarm	635	no-CHH	no-CHH	.	.	.	.	.
Chr1	20157039	20158155	AT1TE66585	.	+	ATREP10D	Helitron	RC	1116	short	1295	high	5353069	chromoarm	674	no-CHH	no-CHH	.	.	.	.	.
Chr1	20164266	20164576	AT1TE66600	.	-	HELITRONY3	Helitron	RC	310	short	1399	high	5360296	chromoarm	560	no-CHH	no-CHH	.	.	.	.	.
Chr1	20164576	20165157	AT1TE66605	.	+	ATREP10A	Helitron	RC	581	short	279	high	5360606	chromoarm	870	no-CHH	no-CHH	.	.	.	.	.
Chr1	20165157	20166498	AT1TE66610	.	+	ATREP10A	Helitron	RC	1341	short	279	high	5361187	chromoarm	1186	no-CHH	no-CHH	.	.	.	.	.
Chr1	20166498	20167335	AT1TE66615	.	-	ATREP1	Helitron	RC	837	short	498	high	5362528	chromoarm	349	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	20167335	20167552	AT1TE66620	.	-	ATREP1	Helitron	RC	217	short	498	high	5363365	chromoarm	132	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	20167552	20167666	AT1TE66625	.	-	ATREP1	Helitron	RC	114	short	498	high	5363582	chromoarm	18	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	20167666	20167692	AT1TE66630	.	+	ARNOLDY1	MuDR	DNA	26	tiny	237	high	5363696	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	20172045	20172728	AT1TE66640	.	-	ATREP1	Helitron	RC	684	short	498	high	5368074	chromoarm	0	.	.	LowExpressed	.	.	.	.
Chr1	20172728	20173718	AT1TE66645	.	+	ATREP3	Helitron	RC	990	short	1439	high	5368758	chromoarm	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	20174001	20174044	AT1TE66650	.	-	ATREP6	Helitron	RC	43	tiny	181	medium	5370031	chromoarm	116	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	20174044	20174320	AT1TE66655	.	+	ATHAT10	HAT	DNA	276	short	35	low	5370074	chromoarm	159	no-RdDM	no-CHH	.	.	.	.	.
Chr1	20174320	20175287	AT1TE66660	.	+	ATHATN10	HAT	DNA	967	short	48	low	5370350	chromoarm	435	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	20175287	20175321	AT1TE66665	.	+	HELITRONY1B	Helitron	RC	34	tiny	414	high	5371317	chromoarm	1402	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	20175321	20175619	AT1TE66670	.	-	ATREP4	Helitron	RC	298	short	832	high	5371351	chromoarm	1436	no-CHH	no-CHH	.	.	.	.	.
Chr1	20175619	20176979	AT1TE66675	.	-	ATREP5	Helitron	RC	1360	short	624	high	5371649	chromoarm	1734	no-CHH	no-CHH	.	.	.	.	.
Chr1	20177283	20177847	AT1TE66680	.	-	HELITRON2	Helitron	RC	564	short	194	medium	5373313	chromoarm	1710	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	20178418	20178834	AT1TE66685	.	-	ATREP15	Helitron	RC	416	short	1003	high	5374448	chromoarm	723	no-CHH	no-CHH	.	.	.	.	.
Chr1	20179046	20179335	AT1TE66690	.	+	ATREP4	Helitron	RC	289	short	832	high	5375076	chromoarm	222	no-CHH	no-CHH	.	.	.	.	.
Chr1	20186871	20187021	AT1TE66710	.	-	ARNOLD2	MuDR	DNA	150	short	68	medium	5382901	chromoarm	47	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	20188085	20188762	AT1TE66715	.	-	BRODYAGA1	MuDR	DNA	677	short	251	high	5384115	chromoarm	974	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr1	20194005	20194456	AT1TE66725	.	-	ATREP10D	Helitron	RC	451	short	1295	high	5390035	chromoarm	282	no-CHH	no-CHH	.	.	.	.	.
Chr1	20194456	20194818	AT1TE66730	.	-	ATTIRX1C	.	DNA	362	short	39	low	5390486	chromoarm	616	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	20194818	20195415	AT1TE66735	.	-	ATREP19	.	DNA	597	short	189	medium	5390848	chromoarm	19	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	20205025	20205321	AT1TE66760	.	+	ATREP10D	Helitron	RC	296	short	1295	high	5401055	chromoarm	973	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	20205321	20205352	AT1TE66765	.	-	ATREP2	Helitron	RC	31	tiny	164	medium	5401351	chromoarm	1269	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	20205352	20206079	AT1TE66770	.	-	ATREP2	Helitron	RC	727	short	164	medium	5401382	chromoarm	998	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	20206079	20206505	AT1TE66775	.	-	ATREP3	Helitron	RC	426	short	1439	high	5402109	chromoarm	572	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr1	20206505	20206548	AT1TE66780	.	+	ATREP10D	Helitron	RC	43	tiny	1295	high	5402535	chromoarm	529	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	20226441	20226747	AT1TE66850	.	+	ATHATN4	HAT	DNA	306	short	56	medium	5422471	chromoarm	949	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	20232106	20234215	AT1TE66860	.	+	ATREP10D	Helitron	RC	2109	medium	1295	high	5428136	chromoarm	1639	no-CHH	no-CHH	.	.	.	.	.
Chr1	20238765	20238833	AT1TE66870	.	+	HELITRONY1B	Helitron	RC	68	tiny	414	high	5434795	chromoarm	1810	no-CHH	no-CHH	.	.	.	.	.
Chr1	20245404	20245497	AT1TE66890	.	+	ATCOPIA68	Copia	LTR	93	tiny	43	low	5441434	chromoarm	399	no-CHH	no-CHH	ExpressedAndAnnotated	20245573	20244119	-	transcript_id-"a3fc1b61-7992-4058-a7f7-1978adfcc871|5"
Chr1	20273197	20273225	AT1TE66980	.	-	ATSINE2A	.	SINE	28	tiny	33	low	5469227	chromoarm	341	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	20273225	20273406	AT1TE66985	.	-	ATSINE2A	.	SINE	181	short	33	low	5469255	chromoarm	160	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	20278033	20278077	AT1TE66995	.	+	ATHPOGON3	Pogo	DNA	44	tiny	118	medium	5474063	chromoarm	240	no-CHH	no-CHH	.	.	.	.	.
Chr1	20278077	20278142	AT1TE67000	.	+	ATHPOGON3	Pogo	DNA	65	tiny	118	medium	5474107	chromoarm	284	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	20278142	20278823	AT1TE67005	.	+	ATHPOGON1	Pogo	DNA	681	short	174	medium	5474172	chromoarm	349	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	20278823	20279336	AT1TE67010	.	-	ATREP15	Helitron	RC	513	short	1003	high	5474853	chromoarm	378	no-CHH	no-CHH	.	.	.	.	.
Chr1	20280073	20280167	AT1TE67015	.	+	ARNOLD2	MuDR	DNA	94	tiny	68	medium	5476103	chromoarm	0	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	20297455	20297895	AT1TE67070	.	+	HELITRONY3	Helitron	RC	440	short	1399	high	5493485	chromoarm	326	no-CHH	no-CHH	.	.	.	.	.
Chr1	20307847	20308018	AT1TE67100	.	-	VANDAL13	MuDR	DNA	171	short	38	low	5503877	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	20312121	20312612	AT1TE67110	.	-	VANDAL6	MuDR	DNA	491	short	89	medium	5508151	chromoarm	0	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	20312612	20312886	AT1TE67115	.	-	VANDAL6	MuDR	DNA	274	short	89	medium	5508642	chromoarm	194	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	20313844	20314471	AT1TE67120	.	-	HELITRON3	Helitron	RC	627	short	53	medium	5509874	chromoarm	1426	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	20314695	20315365	AT1TE67125	.	-	HELITRON4	Helitron	RC	670	short	199	medium	5510725	chromoarm	2277	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	20315686	20316157	AT1TE67130	.	-	HELITRON2	Helitron	RC	471	short	194	medium	5511716	chromoarm	3268	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	20316157	20316268	AT1TE67135	.	-	HELITRON3	Helitron	RC	111	short	53	medium	5512187	chromoarm	3739	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	20316268	20317599	AT1TE67140	.	-	HELITRON1	Helitron	RC	1331	short	130	medium	5512298	chromoarm	3850	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	20317599	20317688	AT1TE67145	.	-	HELITRON5	Helitron	RC	89	tiny	56	medium	5513629	chromoarm	5181	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	20317758	20317986	AT1TE67150	.	-	HELITRON4	Helitron	RC	228	short	199	medium	5513788	chromoarm	5297	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	20319810	20319996	AT1TE67155	.	-	VANDAL6	MuDR	DNA	186	short	89	medium	5515840	chromoarm	3287	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	20320068	20320291	AT1TE67160	.	-	VANDAL6	MuDR	DNA	223	short	89	medium	5516098	chromoarm	2992	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	20322181	20322322	AT1TE67165	.	-	ATREP3	Helitron	RC	141	short	1439	high	5518211	chromoarm	961	no-CHH	no-CHH	.	.	.	.	.
Chr1	20322322	20322966	AT1TE67170	.	-	HELITRON4	Helitron	RC	644	short	199	medium	5518352	chromoarm	317	no-RdDM	no-CHH	.	.	.	.	.
Chr1	20328675	20328959	AT1TE67180	.	+	ATN9_1	MuDR	DNA	284	short	65	medium	5524705	chromoarm	744	no-CHH	no-CHH	.	.	.	.	.
Chr1	20329351	20330733	AT1TE67185	.	+	ATREP16	MuDR	DNA	1382	short	47	low	5525381	chromoarm	1420	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	20331794	20333360	AT1TE67190	.	-	ATREP3	Helitron	RC	1566	short	1439	high	5527824	chromoarm	0	no-RdDM	no-CHH	.	.	.	.	.
Chr1	20333420	20333516	AT1TE67195	.	-	ATMUNX1	MuDR	DNA	96	tiny	155	medium	5529450	chromoarm	558	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	20334146	20334801	AT1TE67200	.	-	ATHILA	Gypsy	LTR	655	short	198	medium	5530176	chromoarm	1284	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	20339966	20340796	AT1TE67210	.	+	ATREP15	Helitron	RC	830	short	1003	high	5535996	chromoarm	110	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	20362627	20362952	AT1TE67280	.	-	HELITRONY1D	Helitron	RC	325	short	756	high	5558657	chromoarm	612	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	20367161	20367525	AT1TE67290	.	+	ATLINE1_4	L1	LINE	364	short	102	medium	5563191	chromoarm	176	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	20368967	20369264	AT1TE67295	.	+	ATHILA7	Gypsy	LTR	297	short	134	medium	5564997	chromoarm	424	no-CHH	no-CHH	.	.	.	.	.
Chr1	20385437	20385826	AT1TE67340	.	-	BRODYAGA1A	MuDR	DNA	389	short	586	high	5581467	chromoarm	484	no-CHH	no-CHH	.	.	.	.	.
Chr1	20388751	20389319	AT1TE67345	.	+	ATREP5	Helitron	RC	568	short	624	high	5584781	chromoarm	252	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	20395863	20396349	AT1TE67360	.	+	ATMU6N1	MuDR	DNA	486	short	39	low	5591893	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	20397884	20399270	AT1TE67365	.	+	ATREP10D	Helitron	RC	1386	short	1295	high	5593914	chromoarm	982	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	20399270	20399577	AT1TE67370	.	+	ATREP4	Helitron	RC	307	short	832	high	5595300	chromoarm	859	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	20399838	20400179	AT1TE67375	.	-	BRODYAGA1A	MuDR	DNA	341	short	586	high	5595868	chromoarm	257	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	20402684	20402902	AT1TE67380	.	-	ATENSPM1	En-Spm	DNA	218	short	30	low	5598714	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	20404809	20405331	AT1TE67385	.	-	ATREP6	Helitron	RC	522	short	181	medium	5600839	chromoarm	2	no-CHH	no-CHH	.	.	.	.	.
Chr1	20411626	20411766	AT1TE67400	.	-	ATREP10A	Helitron	RC	140	short	279	high	5607656	chromoarm	1444	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	20411766	20412026	AT1TE67405	.	-	ATTIRTA1	Tc1	DNA	260	short	95	medium	5607796	chromoarm	1184	no-CHH	no-CHH	.	.	.	.	.
Chr1	20412026	20412128	AT1TE67410	.	-	BRODYAGA1	MuDR	DNA	102	short	251	high	5608056	chromoarm	1082	no-CHH	no-CHH	.	.	.	.	.
Chr1	20412552	20412934	AT1TE67415	.	-	ARNOLDY1	MuDR	DNA	382	short	237	high	5608582	chromoarm	276	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	20420943	20421109	AT1TE67440	.	+	ARNOLD2	MuDR	DNA	166	short	68	medium	5616973	chromoarm	210	no-CHH	no-CHH	.	.	.	.	.
Chr1	20422942	20423145	AT1TE67445	.	-	ATHILA7	Gypsy	LTR	203	short	134	medium	5618972	chromoarm	0	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	20423238	20423739	AT1TE67450	.	-	ATCOPIA79	Copia	LTR	501	short	7	low	5619268	chromoarm	0	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	20427943	20428845	AT1TE67460	.	+	ATREP10B	Helitron	RC	902	short	491	high	5623973	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	20428428	20428771	AT1TE67465	.	-	ATREP5	Helitron	RC	343	short	624	high	5624458	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	20428921	20429239	AT1TE67470	.	-	ATDNA12T3_2	.	DNA	318	short	660	high	5624951	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	20430095	20430351	AT1TE67475	.	+	ATHILA6B	Gypsy	LTR	256	short	134	medium	5626125	chromoarm	117	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	20432158	20432312	AT1TE67480	.	-	RathE1_cons	.	RathE1_cons	154	short	213	high	5628188	chromoarm	420	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	20432898	20433301	AT1TE67485	.	+	ATLINE1_2	L1	LINE	403	short	41	low	5628928	chromoarm	610	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	20437226	20439302	AT1TE67495	.	+	ATREP10D	Helitron	RC	2076	medium	1295	high	5633256	chromoarm	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	20439302	20439325	AT1TE67500	.	-	ATREP3	Helitron	RC	23	tiny	1439	high	5635332	chromoarm	207	no-CHH	no-CHH	.	.	.	.	.
Chr1	20439325	20439364	AT1TE67505	.	+	ATREP4	Helitron	RC	39	tiny	832	high	5635355	chromoarm	168	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	20448178	20448835	AT1TE67530	.	+	ATREP4	Helitron	RC	657	short	832	high	5644208	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	20460641	20461010	AT1TE67570	.	+	ATREP11A	Helitron	RC	369	short	95	medium	5656671	chromoarm	27	no-CHH	no-CHH	.	.	.	.	.
Chr1	20461010	20461089	AT1TE67575	.	+	ATREP1	Helitron	RC	79	tiny	498	high	5657040	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	20464923	20465028	AT1TE67585	.	-	ATREP10D	Helitron	RC	105	short	1295	high	5660953	chromoarm	516	no-CHH	no-CHH	.	.	.	.	.
Chr1	20465028	20466693	AT1TE67590	.	-	HELITRONY1A	Helitron	RC	1665	short	271	high	5661058	chromoarm	621	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	20465351	20465424	AT1TE67595	.	+	ATREP11	Helitron	RC	73	tiny	841	high	5661381	chromoarm	944	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	20465426	20466401	AT1TE67600	.	+	HELITRONY1E	Helitron	RC	975	short	447	high	5661456	chromoarm	1019	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	20466401	20466450	AT1TE67605	.	+	ATREP1	Helitron	RC	49	tiny	498	high	5662431	chromoarm	1994	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	20466693	20466774	AT1TE67610	.	+	HELITRONY1A	Helitron	RC	81	tiny	271	high	5662723	chromoarm	2286	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	20466774	20468318	AT1TE67615	.	-	HELITRONY3	Helitron	RC	1544	short	1399	high	5662804	chromoarm	2367	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	20468318	20469929	AT1TE67620	.	-	ATREP5	Helitron	RC	1611	short	624	high	5664348	chromoarm	986	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	20470029	20470247	AT1TE67625	.	+	ATCOPIA21	Copia	LTR	219	short	14	low	5666058	chromoarm	668	.	.	.	.	.	.	.
Chr1	20475557	20475861	AT1TE67635	.	+	ATGP2N	Gypsy	LTR	304	short	54	medium	5671587	chromoarm	659	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	20475861	20475898	AT1TE67640	.	+	ATGP2N	Gypsy	LTR	37	tiny	54	medium	5671891	chromoarm	963	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	20475898	20477927	AT1TE67645	.	-	ATGP2N	Gypsy	LTR	2029	medium	54	medium	5671928	chromoarm	339	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	20479731	20481471	AT1TE67650	.	+	ATREP10D	Helitron	RC	1740	short	1295	high	5675761	chromoarm	60	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	20486941	20487229	AT1TE67660	.	-	ATCOPIA37	Copia	LTR	288	short	32	low	5682971	chromoarm	2400	no-CHH	no-CHH	.	.	.	.	.
Chr1	20488445	20488674	AT1TE67665	.	+	HELITRONY3	Helitron	RC	229	short	1399	high	5684475	chromoarm	1853	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	20488674	20490263	AT1TE67670	.	+	HELITRONY3	Helitron	RC	1589	short	1399	high	5684704	chromoarm	264	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	20490740	20491155	AT1TE67675	.	+	ATREP19	.	DNA	415	short	189	medium	5686770	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	20491155	20491183	AT1TE67680	.	-	ATREP3	Helitron	RC	28	tiny	1439	high	5687185	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	20491346	20492157	AT1TE67685	.	-	ATREP10D	Helitron	RC	811	short	1295	high	5687376	chromoarm	71	no-CHH	no-CHH	.	.	.	.	.
Chr1	20492457	20492479	AT1TE67690	.	+	ATREP10A	Helitron	RC	22	tiny	279	high	5688487	chromoarm	1182	no-CHH	no-CHH	.	.	.	.	.
Chr1	20492479	20492875	AT1TE67695	.	-	ATHATN4	HAT	DNA	396	short	56	medium	5688509	chromoarm	1204	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	20494115	20494849	AT1TE67700	.	+	ATLINEIII	L1	LINE	734	short	196	medium	5690145	chromoarm	2840	no-CHH	no-CHH	.	.	.	.	.
Chr1	20496404	20496737	AT1TE67705	.	-	BRODYAGA1A	MuDR	DNA	333	short	586	high	5692434	chromoarm	3320	no-CHH	no-CHH	.	.	.	.	.
Chr1	20497385	20497522	AT1TE67710	.	-	RathE1_cons	.	RathE1_cons	137	short	213	high	5693415	chromoarm	2535	no-CHH	no-CHH	.	.	.	.	.
Chr1	20498930	20499325	AT1TE67715	.	-	ATLINE1A	L1	LINE	395	short	289	high	5694960	chromoarm	732	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	20499346	20499812	AT1TE67720	.	+	HELITRONY3	Helitron	RC	466	short	1399	high	5695376	chromoarm	245	no-CHH	no-CHH	.	.	.	.	.
Chr1	20508289	20508541	AT1TE67750	.	-	ATREP3	Helitron	RC	252	short	1439	high	5704319	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	20508541	20509420	AT1TE67755	.	-	ATREP2A	Helitron	RC	879	short	116	medium	5704571	chromoarm	186	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	20509420	20509440	AT1TE67760	.	-	ATREP2A	Helitron	RC	20	tiny	116	medium	5705450	chromoarm	1065	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	20510043	20510413	AT1TE67765	.	-	ATDNA12T3_2	.	DNA	370	short	660	high	5706073	chromoarm	1151	no-CHH	no-RdDM	.	.	.	.	.
Chr1	20513473	20513544	AT1TE67775	.	+	HELITRONY1B	Helitron	RC	71	tiny	414	high	5709503	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	20513544	20513637	AT1TE67780	.	+	ATDNA2T9C	MuDR	DNA	93	tiny	242	high	5709574	chromoarm	55	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	20513637	20514607	AT1TE67785	.	+	ATREP1	Helitron	RC	970	short	498	high	5709667	chromoarm	148	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	20514607	20514641	AT1TE67790	.	-	ATREP1	Helitron	RC	34	tiny	498	high	5710637	chromoarm	120	no-RdDM	no-CHH	.	.	.	.	.
Chr1	20519723	20521099	AT1TE67800	.	+	ATREP10D	Helitron	RC	1376	short	1295	high	5715753	chromoarm	2320	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	20520391	20520598	AT1TE67805	.	+	DT1	Mariner	DNA	208	short	123	medium	5716420	chromoarm	2987	.	.	.	.	.	.	.
Chr1	20520598	20520909	AT1TE67810	.	-	DT1	Mariner	DNA	311	short	123	medium	5716628	chromoarm	3195	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	20526472	20526829	AT1TE67820	.	+	ATDNA2T9C	MuDR	DNA	357	short	242	high	5722502	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	20532131	20532509	AT1TE67830	.	+	ATTIRX1A	.	DNA	378	short	63	medium	5728161	chromoarm	363	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	20540259	20540343	AT1TE67860	.	-	ATHILA8B	Gypsy	LTR	84	tiny	78	medium	5736289	chromoarm	349	no-CHH	no-CHH	.	.	.	.	.
Chr1	20540947	20541038	AT1TE67865	.	+	ATLINE1A	L1	LINE	91	tiny	289	high	5736977	chromoarm	57	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	20547876	20548257	AT1TE67880	.	-	BOMZH2	MuDR	DNA	381	short	47	low	5743906	chromoarm	1275	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	20548257	20548290	AT1TE67885	.	+	ARNOLD1	MuDR	DNA	33	tiny	39	low	5744287	chromoarm	1242	no-CHH	no-CHH	.	.	.	.	.
Chr1	20548290	20548554	AT1TE67890	.	+	ATDNA2T9C	MuDR	DNA	264	short	242	high	5744320	chromoarm	978	no-CHH	no-CHH	.	.	.	.	.
Chr1	20553837	20554065	AT1TE67900	.	-	ATCOPIA5	Copia	LTR	228	short	16	low	5749867	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	20554065	20554102	AT1TE67905	.	-	ATCOPIA80	Copia	LTR	37	tiny	7	low	5750095	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	20558533	20559585	AT1TE67915	.	-	ATREP10D	Helitron	RC	1052	short	1295	high	5754563	chromoarm	345	no-CHH	no-CHH	.	.	.	.	.
Chr1	20559589	20560402	AT1TE67920	.	-	ATREP1	Helitron	RC	813	short	498	high	5755619	chromoarm	3	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	20596900	20596923	AT1TE68040	.	+	ATREP19	.	DNA	23	tiny	189	medium	5792930	chromoarm	576	no-CHH	no-CHH	.	.	.	.	.
Chr1	20596923	20597342	AT1TE68045	.	-	BRODYAGA1A	MuDR	DNA	419	short	586	high	5792953	chromoarm	599	no-CHH	no-CHH	.	.	.	.	.
Chr1	20606479	20606551	AT1TE68070	.	-	ATHILA7	Gypsy	LTR	72	tiny	134	medium	5802509	chromoarm	294	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	20615165	20615802	AT1TE68100	.	-	HELITRONY1C	Helitron	RC	637	short	120	medium	5811195	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	20616598	20616866	AT1TE68105	.	-	ATHAT1	HAT	DNA	268	short	105	medium	5812628	chromoarm	440	no-CHH	no-CHH	.	.	.	.	.
Chr1	20622364	20622391	AT1TE68115	.	+	ATMU3N1	MuDR	DNA	27	tiny	19	low	5818394	chromoarm	707	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	20622392	20622836	AT1TE68120	.	+	ATMU3N1	MuDR	DNA	445	short	19	low	5818421	chromoarm	262	.	.	.	.	.	.	.
Chr1	20649026	20649668	AT1TE68210	.	+	ATDNA2T9C	MuDR	DNA	642	short	242	high	5845056	chromoarm	216	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	20649173	20649582	AT1TE68215	.	-	BRODYAGA1A	MuDR	DNA	410	short	586	high	5845202	chromoarm	362	.	.	.	.	.	.	.
Chr1	20665247	20665865	AT1TE68260	.	+	ATREP10D	Helitron	RC	618	short	1295	high	5861277	chromoarm	660	no-CHH	no-CHH	.	.	.	.	.
Chr1	20668829	20669171	AT1TE68265	.	+	ATREP15	Helitron	RC	342	short	1003	high	5864859	chromoarm	327	no-CHH	no-CHH	.	.	.	.	.
Chr1	20671738	20671934	AT1TE68270	.	-	ATHATN4	HAT	DNA	196	short	56	medium	5867768	chromoarm	2048	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	20683158	20685683	AT1TE68310	.	-	VANDAL2N1	MuDR	DNA	2525	medium	51	medium	5879188	chromoarm	115	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	20686616	20686802	AT1TE68315	.	-	LIMPET1	MuDR	DNA	186	short	116	medium	5882646	chromoarm	3573	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	20687244	20687834	AT1TE68320	.	+	ATREP18	.	DNA	590	short	391	high	5883274	chromoarm	3940	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	20689288	20689340	AT1TE68325	.	+	ATCOPIA57	Copia	LTR	52	tiny	48	low	5885318	chromoarm	2434	no-CHH	no-CHH	.	.	.	.	.
Chr1	20689340	20689521	AT1TE68330	.	+	ATCOPIA57	Copia	LTR	181	short	48	low	5885370	chromoarm	2253	no-CHH	no-CHH	.	.	.	.	.
Chr1	20690325	20690564	AT1TE68335	.	-	ATMU8	MuDR	DNA	239	short	9	low	5886355	chromoarm	1210	no-CHH	no-CHH	.	.	.	.	.
Chr1	20694650	20695217	AT1TE68345	.	+	HELITRONY1D	Helitron	RC	567	short	756	high	5890680	chromoarm	698	no-CHH	no-CHH	.	.	.	.	.
Chr1	20695898	20696398	AT1TE68350	.	-	ATREP15	Helitron	RC	500	short	1003	high	5891928	chromoarm	1250	no-CHH	no-CHH	.	.	.	.	.
Chr1	20696827	20697332	AT1TE68355	.	-	BOMZH2	MuDR	DNA	505	short	47	low	5892857	chromoarm	316	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	20699110	20699248	AT1TE68360	.	+	ATCOPIA24	Copia	LTR	138	short	27	low	5895140	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	20699803	20700043	AT1TE68365	.	+	RP1_AT	.	DNA	240	short	87	medium	5895833	chromoarm	181	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	20708016	20708421	AT1TE68390	.	-	VANDAL17	MuDR	DNA	405	short	178	medium	5904046	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	20709455	20711250	AT1TE68395	.	-	ATLINE1_5	L1	LINE	1795	short	91	medium	5905485	chromoarm	653	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	20747867	20747892	AT1TE68510	.	+	ATREP10D	Helitron	RC	25	tiny	1295	high	5943897	chromoarm	1022	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	20747892	20748615	AT1TE68515	.	+	HELITRONY3	Helitron	RC	723	short	1399	high	5943922	chromoarm	299	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	20748620	20748758	AT1TE68520	.	-	HELITRONY1B	Helitron	RC	138	short	414	high	5944650	chromoarm	156	no-CHH	no-CHH	.	.	.	.	.
Chr1	20773135	20773292	AT1TE68600	.	-	ATHAT1	HAT	DNA	157	short	105	medium	5969165	chromoarm	756	no-CHH	no-CHH	.	.	.	.	.
Chr1	20773295	20774075	AT1TE68605	.	-	ATREP4	Helitron	RC	780	short	832	high	5969325	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	20791407	20791700	AT1TE68660	.	-	ATHATN1	HAT	DNA	293	short	69	medium	5987437	chromoarm	116	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	20795215	20795640	AT1TE68670	.	+	ATLINE1_6	L1	LINE	425	short	129	medium	5991245	chromoarm	699	PolIV-RdDM	DCL3-RdDM	ExpressedAndAnnotated	20795518	20795062	-	transcript_id-"c114c2c8-fc02-42ae-92d9-37981ca7c21c|3"
Chr1	20795645	20796157	AT1TE68675	.	+	ATREP11	Helitron	RC	512	short	841	high	5991675	chromoarm	182	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	20816743	20816843	AT1TE68740	.	+	ATDNA2T9C	MuDR	DNA	100	short	242	high	6012773	chromoarm	4757	no-CHH	no-CHH	.	.	.	.	.
Chr1	20816843	20817468	AT1TE68745	.	-	ARNOLDY1	MuDR	DNA	625	short	237	high	6012873	chromoarm	4132	no-CHH	no-CHH	.	.	.	.	.
Chr1	20819273	20819432	AT1TE68750	.	-	ATREP10D	Helitron	RC	159	short	1295	high	6015303	chromoarm	2168	no-CHH	no-CHH	.	.	.	.	.
Chr1	20819432	20819585	AT1TE68755	.	+	ATREP7	Helitron	RC	153	short	164	medium	6015462	chromoarm	2015	no-CHH	no-CHH	.	.	.	.	.
Chr1	20819585	20821227	AT1TE68760	.	+	ATREP7	Helitron	RC	1642	short	164	medium	6015615	chromoarm	373	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	20821227	20821281	AT1TE68765	.	-	HELITRONY3	Helitron	RC	54	tiny	1399	high	6017257	chromoarm	319	no-CHH	no-CHH	.	.	.	.	.
Chr1	20823564	20823686	AT1TE68770	.	-	ATREP10B	Helitron	RC	122	short	491	high	6019594	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	20823686	20825199	AT1TE68775	.	+	ATREP10C	Helitron	RC	1513	short	123	medium	6019716	chromoarm	46	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	20825199	20825234	AT1TE68780	.	+	HELITRONY3	Helitron	RC	35	tiny	1399	high	6021229	chromoarm	689	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	20826179	20827505	AT1TE68785	.	+	HELITRONY3	Helitron	RC	1326	short	1399	high	6022209	chromoarm	37	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	20827506	20827576	AT1TE68790	.	-	ATREP15	Helitron	RC	70	tiny	1003	high	6023536	chromoarm	541	no-CHH	no-CHH	.	.	.	.	.
Chr1	20834541	20834828	AT1TE68810	.	-	ATREP9	Helitron	RC	287	short	201	high	6030571	chromoarm	600	no-CHH	no-CHH	.	.	.	.	.
Chr1	20873689	20873773	AT1TE68940	.	-	ATCOPIA68	Copia	LTR	85	tiny	43	low	6069718	chromoarm	117	.	.	.	.	.	.	.
Chr1	20893363	20893589	AT1TE69000	.	+	HELITRONY1B	Helitron	RC	226	short	414	high	6089393	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	20914031	20914274	AT1TE69070	.	-	ATREP3	Helitron	RC	243	short	1439	high	6110061	chromoarm	709	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	20914274	20914938	AT1TE69075	.	+	ATREP1	Helitron	RC	664	short	498	high	6110304	chromoarm	952	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	20959810	20960206	AT1TE69220	.	+	HELITRONY1D	Helitron	RC	396	short	756	high	6155840	chromoarm	149	no-CHH	no-CHH	.	.	.	.	.
Chr1	20971992	20972050	AT1TE69260	.	+	ATREP10D	Helitron	RC	58	tiny	1295	high	6168022	chromoarm	915	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr1	20972050	20972071	AT1TE69265	.	+	ATREP5	Helitron	RC	21	tiny	624	high	6168080	chromoarm	973	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	20972073	20974323	AT1TE69270	.	+	ATREP5	Helitron	RC	2250	medium	624	high	6168103	chromoarm	133	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	20972632	20972902	+	transcript_id-"0b1bcd75-0273-40c2-add0-c98c616a8e65|4"
Chr1	20974323	20974349	AT1TE69275	.	+	ATREP11	Helitron	RC	26	tiny	841	high	6170353	chromoarm	107	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	20979422	20980832	AT1TE69285	.	+	ATDNAI27T9A	MuDR	DNA	1410	short	116	medium	6175452	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	20984541	20984813	AT1TE69295	.	+	ATENSPM5	En-Spm	DNA	272	short	111	medium	6180571	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	21018770	21019194	AT1TE69400	.	-	TAT1_ATH	Gypsy	LTR	424	short	87	medium	6214800	chromoarm	1006	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	21021307	21021571	AT1TE69405	.	-	ATTIRTA1	Tc1	DNA	264	short	95	medium	6217337	chromoarm	812	no-RdDM	no-CHH	.	.	.	.	.
Chr1	21033412	21034260	AT1TE69440	.	-	HELITRONY1B	Helitron	RC	848	short	414	high	6229442	chromoarm	1454	no-CHH	no-RdDM	.	.	.	.	.
Chr1	21037790	21037829	AT1TE69450	.	+	ATREP15	Helitron	RC	39	tiny	1003	high	6233820	chromoarm	771	no-CHH	no-CHH	.	.	.	.	.
Chr1	21037829	21038235	AT1TE69455	.	-	ATREP6	Helitron	RC	406	short	181	medium	6233859	chromoarm	810	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	21038235	21038827	AT1TE69460	.	-	HELITRONY1D	Helitron	RC	592	short	756	high	6234265	chromoarm	1216	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	21038827	21039075	AT1TE69465	.	+	ATREP15	Helitron	RC	248	short	1003	high	6234857	chromoarm	1808	no-CHH	no-CHH	.	.	.	.	.
Chr1	21039622	21039856	AT1TE69470	.	+	ATTIRTA1	Tc1	DNA	234	short	95	medium	6235652	chromoarm	2603	no-CHH	no-CHH	.	.	.	.	.
Chr1	21040744	21041073	AT1TE69475	.	-	ATREP7	Helitron	RC	329	short	164	medium	6236774	chromoarm	2340	no-CHH	no-CHH	.	.	.	.	.
Chr1	21041482	21041921	AT1TE69480	.	+	ARNOLDY2	MuDR	DNA	439	short	288	high	6237512	chromoarm	1492	no-CHH	no-CHH	.	.	.	.	.
Chr1	21041921	21042242	AT1TE69485	.	+	HELITRONY3	Helitron	RC	321	short	1399	high	6237951	chromoarm	1171	no-CHH	no-CHH	.	.	.	.	.
Chr1	21042242	21042268	AT1TE69490	.	-	SIMPLEGUY1	Harbinger	DNA	26	tiny	116	medium	6238272	chromoarm	1145	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	21042268	21042929	AT1TE69495	.	-	SIMPLEGUY1	Harbinger	DNA	661	short	116	medium	6238298	chromoarm	484	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	21051057	21051623	AT1TE69520	.	-	BRODYAGA1	MuDR	DNA	566	short	251	high	6247087	chromoarm	40	no-CHH	no-CHH	.	.	.	.	.
Chr1	21053505	21053617	AT1TE69525	.	-	ATHATN1	HAT	DNA	112	short	69	medium	6249535	chromoarm	2488	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	21057922	21058431	AT1TE69535	.	+	ATDNA2T9C	MuDR	DNA	509	short	242	high	6253952	chromoarm	513	no-CHH	no-CHH	.	.	.	.	.
Chr1	21066230	21066452	AT1TE69560	.	-	ATCOPIA94	Copia	LTR	222	short	39	low	6262260	chromoarm	653	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	21066909	21067588	AT1TE69565	.	+	HELITRONY3	Helitron	RC	679	short	1399	high	6262939	chromoarm	1332	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	21067588	21067896	AT1TE69570	.	-	ATREP11	Helitron	RC	308	short	841	high	6263618	chromoarm	2011	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	21069439	21070494	AT1TE69575	.	+	ATREP15	Helitron	RC	1055	short	1003	high	6265469	chromoarm	653	no-CHH	no-CHH	.	.	.	.	.
Chr1	21071877	21072073	AT1TE69580	.	-	HELITRONY2	Helitron	RC	196	short	198	medium	6267907	chromoarm	241	no-CHH	no-CHH	.	.	.	.	.
Chr1	21072073	21072796	AT1TE69585	.	+	ATREP10D	Helitron	RC	723	short	1295	high	6268103	chromoarm	437	no-CHH	no-CHH	.	.	.	.	.
Chr1	21080529	21080631	AT1TE69610	.	+	BOMZH2	MuDR	DNA	102	short	47	low	6276559	chromoarm	361	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	21080631	21081127	AT1TE69615	.	-	BOMZH2	MuDR	DNA	496	short	47	low	6276661	chromoarm	463	PolIV-and-RDR6-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	21081127	21081185	AT1TE69620	.	-	BOMZH2	MuDR	DNA	58	tiny	47	low	6277157	chromoarm	959	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	21088967	21089544	AT1TE69650	.	+	ARNOLDY2	MuDR	DNA	577	short	288	high	6284997	chromoarm	489	no-CHH	no-CHH	.	.	.	.	.
Chr1	21097914	21097971	AT1TE69680	.	+	ATTIR16T3A	.	DNA	57	tiny	106	medium	6293944	chromoarm	88	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	21097971	21098190	AT1TE69685	.	+	ATTIRX1B	.	DNA	219	short	44	low	6294001	chromoarm	145	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	21102715	21103162	AT1TE69695	.	+	HELITRONY3	Helitron	RC	447	short	1399	high	6298745	chromoarm	14	no-CHH	no-CHH	.	.	.	.	.
Chr1	21103162	21104416	AT1TE69700	.	-	HELITRONY1E	Helitron	RC	1254	short	447	high	6299192	chromoarm	461	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	21104416	21104443	AT1TE69705	.	+	HELITRONY1E	Helitron	RC	27	tiny	447	high	6300446	chromoarm	1715	DCL3-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	21104443	21104830	AT1TE69710	.	+	ATREP4	Helitron	RC	387	short	832	high	6300473	chromoarm	1484	no-CHH	no-CHH	.	.	.	.	.
Chr1	21104830	21104859	AT1TE69715	.	-	HELITRONY1D	Helitron	RC	29	tiny	756	high	6300860	chromoarm	1455	no-CHH	no-CHH	.	.	.	.	.
Chr1	21104859	21105188	AT1TE69720	.	-	ATREP2	Helitron	RC	329	short	164	medium	6300889	chromoarm	1126	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	21105188	21105256	AT1TE69725	.	+	ATREP10D	Helitron	RC	68	tiny	1295	high	6301218	chromoarm	1058	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	21105256	21105276	AT1TE69730	.	+	ATHPOGON1	Pogo	DNA	20	tiny	174	medium	6301286	chromoarm	1038	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	21105276	21105955	AT1TE69735	.	+	ATHPOGON1	Pogo	DNA	679	short	174	medium	6301306	chromoarm	359	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	21105955	21106348	AT1TE69740	.	+	ATREP5	Helitron	RC	393	short	624	high	6301985	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	21106909	21107725	AT1TE69745	.	-	META1	Copia	LTR	816	short	138	medium	6302939	chromoarm	136	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	21120455	21120564	AT1TE69780	.	-	RathE3_cons	.	RathE3_cons	109	short	104	medium	6316485	chromoarm	175	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	21121191	21121267	AT1TE69785	.	+	ATREP3	Helitron	RC	76	tiny	1439	high	6317221	chromoarm	803	no-RdDM	no-CHH	.	.	.	.	.
Chr1	21121267	21121949	AT1TE69790	.	+	HELITRONY2	Helitron	RC	682	short	198	medium	6317297	chromoarm	121	no-CHH	no-CHH	.	.	.	.	.
Chr1	21124889	21125292	AT1TE69795	.	-	VANDAL6	MuDR	DNA	404	short	89	medium	6320918	chromoarm	654	.	.	LowExpressed	.	.	.	.
Chr1	21125293	21125354	AT1TE69800	.	-	ATGP2N	Gypsy	LTR	62	tiny	54	medium	6321322	chromoarm	1058	.	.	LowExpressed	.	.	.	.
Chr1	21125354	21125756	AT1TE69805	.	-	VANDAL6	MuDR	DNA	402	short	89	medium	6321384	chromoarm	1120	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	21125757	21125793	AT1TE69810	.	+	ATLANTYS3	Gypsy	LTR	37	tiny	142	medium	6321786	chromoarm	1522	.	.	LowExpressed	.	.	.	.
Chr1	21125810	21126203	AT1TE69815	.	-	VANDAL6	MuDR	DNA	393	short	89	medium	6321840	chromoarm	1576	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	21126440	21126548	AT1TE69820	.	-	HELITRONY3	Helitron	RC	108	short	1399	high	6322470	chromoarm	2206	no-CHH	no-CHH	.	.	.	.	.
Chr1	21126548	21126578	AT1TE69825	.	-	ATREP15	Helitron	RC	30	tiny	1003	high	6322578	chromoarm	2314	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	21126578	21127989	AT1TE69830	.	-	HELITRONY3	Helitron	RC	1411	short	1399	high	6322608	chromoarm	1085	no-CHH	no-CHH	.	.	.	.	.
Chr1	21127989	21128869	AT1TE69835	.	+	ATREP1	Helitron	RC	880	short	498	high	6324019	chromoarm	205	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	21128869	21128901	AT1TE69840	.	+	ATREP1	Helitron	RC	32	tiny	498	high	6324899	chromoarm	173	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	21128901	21128957	AT1TE69845	.	+	ATREP4	Helitron	RC	56	tiny	832	high	6324931	chromoarm	117	no-CHH	no-CHH	.	.	.	.	.
Chr1	21130764	21131106	AT1TE69850	.	+	ATREP10B	Helitron	RC	342	short	491	high	6326794	chromoarm	206	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	21131106	21131907	AT1TE69855	.	+	HELITRONY1D	Helitron	RC	801	short	756	high	6327136	chromoarm	548	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	21131907	21132147	AT1TE69860	.	+	ARNOLDY1	MuDR	DNA	240	short	237	high	6327937	chromoarm	1349	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	21132484	21133186	AT1TE69865	.	-	ATREP10B	Helitron	RC	702	short	491	high	6328514	chromoarm	1926	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	21133195	21133256	AT1TE69870	.	+	ATREP4	Helitron	RC	61	tiny	832	high	6329225	chromoarm	2637	no-CHH	no-CHH	.	.	.	.	.
Chr1	21134774	21135490	AT1TE69875	.	-	ATREP11	Helitron	RC	716	short	841	high	6330804	chromoarm	1532	no-CHH	no-CHH	.	.	.	.	.
Chr1	21144655	21144913	AT1TE69900	.	-	RP1_AT	.	DNA	258	short	87	medium	6340685	chromoarm	469	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	21151748	21152387	AT1TE69920	.	-	HELITRONY1D	Helitron	RC	639	short	756	high	6347778	chromoarm	2280	no-CHH	no-CHH	.	.	.	.	.
Chr1	21152796	21152995	AT1TE69925	.	+	ATREP15	Helitron	RC	199	short	1003	high	6348826	chromoarm	3328	no-CHH	no-CHH	.	.	.	.	.
Chr1	21152995	21153637	AT1TE69930	.	+	ATREP4	Helitron	RC	642	short	832	high	6349025	chromoarm	3527	no-CHH	no-CHH	.	.	.	.	.
Chr1	21154287	21155239	AT1TE69935	.	+	ATREP4	Helitron	RC	952	short	832	high	6350317	chromoarm	4535	no-CHH	no-CHH	.	.	.	.	.
Chr1	21158248	21158440	AT1TE69940	.	-	ATDNA12T3_2	.	DNA	192	short	660	high	6354278	chromoarm	1334	no-CHH	no-CHH	.	.	.	.	.
Chr1	21168325	21168474	AT1TE69970	.	-	ATREP3	Helitron	RC	149	short	1439	high	6364355	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	21168474	21169350	AT1TE69975	.	+	ATREP4	Helitron	RC	876	short	832	high	6364504	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	21169350	21169401	AT1TE69980	.	+	ATREP10D	Helitron	RC	51	tiny	1295	high	6365380	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	21172520	21173360	AT1TE69990	.	-	ATREP3	Helitron	RC	840	short	1439	high	6368550	chromoarm	260	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	21173360	21173437	AT1TE69995	.	-	ATREP15	Helitron	RC	77	tiny	1003	high	6369390	chromoarm	1100	no-CHH	DCL3-RdDM	LowExpressed	.	.	.	.
Chr1	21179996	21180142	AT1TE70010	.	-	ATHATN3	HAT	DNA	146	short	70	medium	6376026	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	21191749	21191886	AT1TE70050	.	+	ATCOPIA84	Copia	LTR	137	short	10	low	6387779	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	21199223	21199564	AT1TE70070	.	-	ATREP3	Helitron	RC	341	short	1439	high	6395253	chromoarm	321	no-CHH	no-CHH	.	.	.	.	.
Chr1	21209686	21211361	AT1TE70100	.	-	HELITRONY3	Helitron	RC	1675	short	1399	high	6405716	chromoarm	395	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	21211545	21211881	AT1TE70105	.	-	ATMU7	MuDR	DNA	337	short	32	low	6407574	chromoarm	307	.	.	.	.	.	.	.
Chr1	21215657	21215832	AT1TE70115	.	-	ATLINE1A	L1	LINE	176	short	289	high	6411686	chromoarm	1696	.	.	.	.	.	.	.
Chr1	21218751	21218834	AT1TE70120	.	+	ATLINEIII	L1	LINE	83	tiny	196	medium	6414781	chromoarm	983	no-CHH	no-CHH	.	.	.	.	.
Chr1	21225212	21225311	AT1TE70140	.	+	ATTIRX1A	.	DNA	99	tiny	63	medium	6421242	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	21228850	21229015	AT1TE70150	.	-	RathE1_cons	.	RathE1_cons	165	short	213	high	6424880	chromoarm	1907	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	21233451	21233483	AT1TE70160	.	+	RathE2_cons	.	RathE2_cons	32	tiny	74	medium	6429481	chromoarm	230	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	21237188	21237265	AT1TE70170	.	+	ATSINE4	.	SINE	77	tiny	98	medium	6433218	chromoarm	1543	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	21239874	21240377	AT1TE70175	.	-	ATENSPM1A	En-Spm	DNA	503	short	77	medium	6435904	chromoarm	0	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	21244298	21244323	AT1TE70185	.	-	ATCOPIA26	Copia	LTR	25	tiny	19	low	6440328	chromoarm	333	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	21244323	21249205	AT1TE70190	.	-	ATCOPIA26	Copia	LTR	4882	medium	19	low	6440353	chromoarm	358	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	21249101	21247242	-	transcript_id-"9311c5a9-6d2e-4abc-982e-cbb08b887fe2|3"
Chr1	21249205	21249261	AT1TE70195	.	-	ATCOPIA26	Copia	LTR	56	tiny	19	low	6445235	chromoarm	1166	no-RdDM	no-CHH	.	.	.	.	.
Chr1	21249286	21249650	AT1TE70200	.	-	ATCOPIA65A	Copia	LTR	364	short	9	low	6445316	chromoarm	777	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	21250039	21250188	AT1TE70205	.	+	ATREP10A	Helitron	RC	149	short	279	high	6446069	chromoarm	239	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	21252457	21252855	AT1TE70210	.	+	ATLINEIII	L1	LINE	398	short	196	medium	6448487	chromoarm	961	no-CHH	no-CHH	.	.	.	.	.
Chr1	21260146	21261030	AT1TE70230	.	+	ATREP10	Helitron	RC	884	short	63	medium	6456176	chromoarm	224	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	21309949	21310162	AT1TE70390	.	+	ATCOPIA7	Copia	LTR	213	short	5	low	6505979	chromoarm	315	no-CHH	no-CHH	.	.	.	.	.
Chr1	21318379	21318939	AT1TE70420	.	-	ATREP11	Helitron	RC	560	short	841	high	6514409	chromoarm	420	no-CHH	no-CHH	.	.	.	.	.
Chr1	21324536	21324920	AT1TE70430	.	-	ATREP3	Helitron	RC	384	short	1439	high	6520566	chromoarm	158	no-CHH	no-CHH	.	.	.	.	.
Chr1	21335505	21335548	AT1TE70460	.	+	ATREP1	Helitron	RC	43	tiny	498	high	6531535	chromoarm	909	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	21335548	21335893	AT1TE70465	.	+	ATREP4	Helitron	RC	345	short	832	high	6531578	chromoarm	952	no-CHH	no-CHH	.	.	.	.	.
Chr1	21335893	21336605	AT1TE70470	.	+	ATREP2A	Helitron	RC	712	short	116	medium	6531923	chromoarm	843	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	21341499	21342530	AT1TE70480	.	-	ATMUN2	MuDR	DNA	1031	short	6	low	6537529	chromoarm	332	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	21346161	21351041	AT1TE70490	.	-	ATCOPIA22	Copia	LTR	4880	medium	14	low	6542191	chromoarm	4	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	21350837	21349041	-	transcript_id-"617ae96f-90b5-4df9-a68a-faf0a0fc7194|7"
Chr1	21359986	21360536	AT1TE70520	.	+	HELITRONY1D	Helitron	RC	550	short	756	high	6556016	chromoarm	114	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	21364455	21364685	AT1TE70530	.	-	ATENSPM6	En-Spm	DNA	230	short	151	medium	6560485	chromoarm	618	no-CHH	no-CHH	.	.	.	.	.
Chr1	21365441	21365626	AT1TE70535	.	+	ATSINE4	.	SINE	185	short	98	medium	6561471	chromoarm	1094	DCL3-RdDM	no-RdDM	.	.	.	.	.
Chr1	21369629	21370488	AT1TE70545	.	+	ATREP10B	Helitron	RC	859	short	491	high	6565659	chromoarm	562	no-CHH	no-CHH	.	.	.	.	.
Chr1	21371689	21372150	AT1TE70550	.	-	ATMU6N1	MuDR	DNA	461	short	39	low	6567719	chromoarm	0	no-CHH	no-RdDM	.	.	.	.	.
Chr1	21374953	21375503	AT1TE70555	.	-	META1	Copia	LTR	550	short	138	medium	6570983	chromoarm	1093	no-CHH	no-CHH	.	.	.	.	.
Chr1	21386812	21387039	AT1TE70590	.	-	ATREP1	Helitron	RC	227	short	498	high	6582842	chromoarm	1133	no-CHH	no-CHH	.	.	.	.	.
Chr1	21387039	21387932	AT1TE70595	.	-	ATREP3	Helitron	RC	893	short	1439	high	6583069	chromoarm	1360	no-CHH	no-CHH	.	.	.	.	.
Chr1	21387932	21389492	AT1TE70600	.	-	ATREP11A	Helitron	RC	1560	short	95	medium	6583962	chromoarm	589	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	21389492	21389678	AT1TE70605	.	+	ATREP10A	Helitron	RC	186	short	279	high	6585522	chromoarm	403	no-CHH	no-CHH	.	.	.	.	.
Chr1	21389678	21390066	AT1TE70610	.	+	BRODYAGA1A	MuDR	DNA	388	short	586	high	6585708	chromoarm	15	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	21390066	21391113	AT1TE70615	.	+	HELITRONY1B	Helitron	RC	1047	short	414	high	6586096	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	21391562	21391681	AT1TE70620	.	+	VANDAL16	MuDR	DNA	119	short	42	low	6587592	chromoarm	1133	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	21391810	21392244	AT1TE70625	.	-	ATREP4	Helitron	RC	434	short	832	high	6587840	chromoarm	1248	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	21392850	21392997	AT1TE70630	.	+	VANDAL16	MuDR	DNA	147	short	42	low	6588880	chromoarm	495	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	21398751	21399739	AT1TE70640	.	-	ATREP10D	Helitron	RC	988	short	1295	high	6594781	chromoarm	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	21400668	21401371	AT1TE70645	.	+	HELITRONY1D	Helitron	RC	703	short	756	high	6596698	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	21401679	21401703	AT1TE70650	.	-	ARNOLD3	MuDR	DNA	24	tiny	45	low	6597709	chromoarm	0	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	21401703	21401734	AT1TE70655	.	+	BRODYAGA2	MuDR	DNA	31	tiny	525	high	6597733	chromoarm	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	21401734	21402968	AT1TE70660	.	+	ATREP5	Helitron	RC	1234	short	624	high	6597764	chromoarm	18	no-CHH	no-CHH	.	.	.	.	.
Chr1	21402968	21403099	AT1TE70665	.	-	HELITRONY1D	Helitron	RC	131	short	756	high	6598998	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	21403099	21403361	AT1TE70670	.	+	ATREP15	Helitron	RC	262	short	1003	high	6599129	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	21405942	21406616	AT1TE70675	.	-	ATREP15	Helitron	RC	674	short	1003	high	6601972	chromoarm	306	no-CHH	no-CHH	.	.	.	.	.
Chr1	21413256	21413622	AT1TE70690	.	-	ATLINE2	L1	LINE	366	short	138	medium	6609286	chromoarm	719	no-CHH	no-CHH	.	.	.	.	.
Chr1	21418458	21418545	AT1TE70700	.	-	ATLINE1_6	L1	LINE	87	tiny	129	medium	6614488	chromoarm	556	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	21425428	21425569	AT1TE70720	.	-	ARNOLD2	MuDR	DNA	141	short	68	medium	6621458	chromoarm	1120	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	21426155	21426198	AT1TE70725	.	-	ATREP11	Helitron	RC	43	tiny	841	high	6622185	chromoarm	491	no-CHH	no-CHH	.	.	.	.	.
Chr1	21426198	21426414	AT1TE70730	.	-	HELITRONY1A	Helitron	RC	216	short	271	high	6622228	chromoarm	275	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	21428115	21428825	AT1TE70735	.	-	ATREP13	Helitron	RC	710	short	106	medium	6624145	chromoarm	766	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	21428825	21429034	AT1TE70740	.	-	ATREP6	Helitron	RC	209	short	181	medium	6624855	chromoarm	999	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	21429062	21429163	AT1TE70745	.	-	ATLINE1A	L1	LINE	102	short	289	high	6625091	chromoarm	870	.	.	.	.	.	.	.
Chr1	21439106	21439196	AT1TE70770	.	+	ATHPOGON3	Pogo	DNA	90	tiny	118	medium	6635136	chromoarm	217	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	21444633	21444818	AT1TE70780	.	-	ATREP15	Helitron	RC	185	short	1003	high	6640663	chromoarm	1418	no-CHH	no-CHH	.	.	.	.	.
Chr1	21444818	21445511	AT1TE70785	.	-	HELITRONY1B	Helitron	RC	693	short	414	high	6640848	chromoarm	725	no-CHH	no-CHH	.	.	.	.	.
Chr1	21449263	21449290	AT1TE70795	.	+	HELITRONY1E	Helitron	RC	27	tiny	447	high	6645293	chromoarm	2204	no-CHH	no-CHH	.	.	.	.	.
Chr1	21449290	21450131	AT1TE70800	.	+	ATREP3	Helitron	RC	841	short	1439	high	6645320	chromoarm	2231	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	21450131	21455990	AT1TE70805	.	-	ATLINE1_1	L1	LINE	5859	long	61	medium	6646161	chromoarm	1764	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	21455990	21456069	AT1TE70810	.	+	ATREP3	Helitron	RC	79	tiny	1439	high	6652020	chromoarm	1685	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	21457400	21457500	AT1TE70815	.	-	TSCL	.	LINE?	100	short	81	medium	6653430	chromoarm	254	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	21470186	21470365	AT1TE70850	.	+	VANDAL20	MuDR	DNA	179	short	51	medium	6666216	chromoarm	2045	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	21470451	21470628	AT1TE70855	.	+	BRODYAGA1A	MuDR	DNA	177	short	586	high	6666481	chromoarm	2310	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	21471748	21471898	AT1TE70860	.	+	VANDAL20	MuDR	DNA	150	short	51	medium	6667778	chromoarm	1606	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	21472095	21472272	AT1TE70865	.	+	VANDAL20	MuDR	DNA	177	short	51	medium	6668125	chromoarm	1232	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	21476035	21477001	AT1TE70875	.	+	ATCOPIA39	Copia	LTR	966	short	5	low	6672065	chromoarm	1499	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	21477380	21477447	AT1TE70880	.	+	ATREP15	Helitron	RC	67	tiny	1003	high	6673410	chromoarm	1142	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	21477447	21478566	AT1TE70885	.	-	HELITRONY1D	Helitron	RC	1119	short	756	high	6673477	chromoarm	23	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	21502043	21502166	AT1TE70960	.	-	HELITRONY3	Helitron	RC	123	short	1399	high	6698073	chromoarm	268	no-CHH	no-CHH	.	.	.	.	.
Chr1	21502166	21502194	AT1TE70965	.	+	ATTIRX1A	.	DNA	28	tiny	63	medium	6698196	chromoarm	391	no-CHH	no-CHH	.	.	.	.	.
Chr1	21502194	21502488	AT1TE70970	.	+	ATTIRX1A	.	DNA	294	short	63	medium	6698224	chromoarm	419	no-CHH	no-CHH	.	.	.	.	.
Chr1	21502488	21502537	AT1TE70975	.	+	ATDNA2T9A	MuDR	DNA	49	tiny	48	low	6698518	chromoarm	430	no-CHH	no-CHH	.	.	.	.	.
Chr1	21507772	21508044	AT1TE70985	.	+	RP1_AT	.	DNA	272	short	87	medium	6703802	chromoarm	343	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	21508829	21508954	AT1TE70990	.	+	RathE3_cons	.	RathE3_cons	125	short	104	medium	6704859	chromoarm	1400	no-CHH	no-CHH	.	.	.	.	.
Chr1	21509600	21510092	AT1TE70995	.	+	ATLANTYS3	Gypsy	LTR	492	short	142	medium	6705630	chromoarm	417	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr1	21514820	21515306	AT1TE71005	.	-	ATHATN3	HAT	DNA	486	short	70	medium	6710850	chromoarm	612	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	21523738	21523953	AT1TE71030	.	-	ATREP5	Helitron	RC	215	short	624	high	6719768	chromoarm	1514	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	21523953	21524951	AT1TE71035	.	+	ATREP5	Helitron	RC	998	short	624	high	6719983	chromoarm	1729	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	21524156	21524517	AT1TE71040	.	-	ATHATN5	HAT	DNA	361	short	42	low	6720186	chromoarm	1932	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	21524994	21529851	AT1TE71045	.	-	ATCOPIA78	Copia	LTR	4857	medium	24	low	6721024	chromoarm	251	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	21531900	21531943	AT1TE71050	.	-	ATREP19	.	DNA	43	tiny	189	medium	6727930	chromoarm	1442	no-CHH	no-CHH	.	.	.	.	.
Chr1	21531943	21532391	AT1TE71055	.	+	HELITRONY1B	Helitron	RC	448	short	414	high	6727973	chromoarm	1365	no-CHH	no-CHH	.	.	.	.	.
Chr1	21532391	21532411	AT1TE71060	.	-	BRODYAGA1A	MuDR	DNA	20	tiny	586	high	6728421	chromoarm	1345	no-CHH	no-CHH	.	.	.	.	.
Chr1	21540009	21540750	AT1TE71080	.	-	ATREP3	Helitron	RC	741	short	1439	high	6736039	chromoarm	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	21540214	21540531	AT1TE71085	.	+	ATHPOGON1	Pogo	DNA	317	short	174	medium	6736244	chromoarm	188	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	21565571	21565642	AT1TE71160	.	-	ATCOPIA48	Copia	LTR	71	tiny	15	low	6761601	chromoarm	576	no-CHH	no-CHH	.	.	.	.	.
Chr1	21581777	21582008	AT1TE71210	.	-	ATDNA12T3_2	.	DNA	231	short	660	high	6777807	chromoarm	77	no-CHH	DCL3-RdDM	.	.	.	.	.
Chr1	21582695	21583070	AT1TE71215	.	-	ATCOPIA26	Copia	LTR	375	short	19	low	6778725	chromoarm	334	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	21601870	21601922	AT1TE71270	.	+	ATENSPM2	En-Spm	DNA	52	tiny	114	medium	6797900	chromoarm	497	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	21601922	21602156	AT1TE71275	.	-	ATREP1	Helitron	RC	234	short	498	high	6797952	chromoarm	549	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	21602869	21602973	AT1TE71280	.	+	ARNOLDY2	MuDR	DNA	104	short	288	high	6798899	chromoarm	1496	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	21602973	21604616	AT1TE71285	.	+	ATREP3	Helitron	RC	1643	short	1439	high	6799003	chromoarm	1135	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	21604616	21604825	AT1TE71290	.	+	ATREP11	Helitron	RC	209	short	841	high	6800646	chromoarm	926	no-CHH	no-CHH	.	.	.	.	.
Chr1	21608105	21608573	AT1TE71300	.	-	TNAT1A	.	DNA	469	short	162	medium	6804134	chromoarm	109	.	.	.	.	.	.	.
Chr1	21609619	21609904	AT1TE71305	.	+	ATREP3	Helitron	RC	285	short	1439	high	6805649	chromoarm	1004	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	21609923	21610652	AT1TE71310	.	+	BRODYAGA2	MuDR	DNA	729	short	525	high	6805953	chromoarm	256	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	21610652	21610855	AT1TE71315	.	+	ATREP19	.	DNA	203	short	189	medium	6806682	chromoarm	53	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	21614848	21615287	AT1TE71325	.	-	ATREP10D	Helitron	RC	439	short	1295	high	6810878	chromoarm	759	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr1	21615297	21616150	AT1TE71330	.	-	ATREP1	Helitron	RC	853	short	498	high	6811327	chromoarm	1208	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	21616150	21616179	AT1TE71335	.	-	ATREP14	Helitron	RC	29	tiny	47	low	6812180	chromoarm	2061	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	21622739	21622833	AT1TE71350	.	-	BRODYAGA1A	MuDR	DNA	94	tiny	586	high	6818769	chromoarm	271	no-CHH	no-CHH	.	.	.	.	.
Chr1	21623609	21623717	AT1TE71355	.	-	ATTIRX1D	.	DNA	108	short	28	low	6819639	chromoarm	310	no-CHH	no-CHH	.	.	.	.	.
Chr1	21626431	21626455	AT1TE71360	.	+	ATREP4	Helitron	RC	24	tiny	832	high	6822461	chromoarm	380	no-CHH	no-CHH	.	.	.	.	.
Chr1	21626455	21627325	AT1TE71365	.	+	ATREP10D	Helitron	RC	870	short	1295	high	6822485	chromoarm	404	no-CHH	no-CHH	.	.	.	.	.
Chr1	21628786	21628868	AT1TE71370	.	-	VANDALNX1	MuDR	DNA	82	tiny	14	low	6824816	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	21636861	21637408	AT1TE71400	.	-	HELITRONY1D	Helitron	RC	547	short	756	high	6832891	chromoarm	1558	no-CHH	no-CHH	.	.	.	.	.
Chr1	21637418	21638230	AT1TE71405	.	-	ATDNA12T3_2	.	DNA	812	short	660	high	6833448	chromoarm	2115	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	21640049	21640383	AT1TE71410	.	+	ATREP11A	Helitron	RC	334	short	95	medium	6836079	chromoarm	766	no-CHH	no-CHH	.	.	.	.	.
Chr1	21640520	21640771	AT1TE71415	.	-	RP1_AT	.	DNA	251	short	87	medium	6836550	chromoarm	378	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	21650168	21650836	AT1TE71440	.	+	ATDNA12T3_2	.	DNA	668	short	660	high	6846198	chromoarm	2325	no-CHH	no-CHH	.	.	.	.	.
Chr1	21651287	21651722	AT1TE71445	.	-	ATREP1	Helitron	RC	435	short	498	high	6847317	chromoarm	1439	no-CHH	no-CHH	.	.	.	.	.
Chr1	21651911	21652499	AT1TE71450	.	+	BRODYAGA1	MuDR	DNA	588	short	251	high	6847941	chromoarm	662	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	21652499	21652519	AT1TE71455	.	-	TNAT1A	.	DNA	20	tiny	162	medium	6848529	chromoarm	642	no-CHH	no-CHH	.	.	.	.	.
Chr1	21656658	21656890	AT1TE71465	.	+	DT1	Mariner	DNA	232	short	123	medium	6852688	chromoarm	1541	no-CHH	no-CHH	.	.	.	.	.
Chr1	21658188	21658307	AT1TE71470	.	-	ATREP10D	Helitron	RC	119	short	1295	high	6854218	chromoarm	3071	no-CHH	no-CHH	.	.	.	.	.
Chr1	21658307	21658434	AT1TE71475	.	-	ATREP4	Helitron	RC	127	short	832	high	6854337	chromoarm	3190	no-CHH	no-CHH	.	.	.	.	.
Chr1	21658434	21659418	AT1TE71480	.	+	ATREP15	Helitron	RC	984	short	1003	high	6854464	chromoarm	3317	no-CHH	no-CHH	.	.	.	.	.
Chr1	21659914	21660054	AT1TE71485	.	-	RathE1_cons	.	RathE1_cons	140	short	213	high	6855944	chromoarm	3076	no-CHH	no-CHH	.	.	.	.	.
Chr1	21662482	21662906	AT1TE71490	.	+	ATREP10B	Helitron	RC	424	short	491	high	6858512	chromoarm	224	no-CHH	no-CHH	.	.	.	.	.
Chr1	21668899	21669417	AT1TE71500	.	+	ATREP11	Helitron	RC	518	short	841	high	6864929	chromoarm	2072	no-CHH	no-CHH	.	.	.	.	.
Chr1	21672424	21672494	AT1TE71505	.	+	ATENSPM10	En-Spm	DNA	70	tiny	81	medium	6868454	chromoarm	4128	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr1	21675557	21675921	AT1TE71515	.	+	ATREP10B	Helitron	RC	364	short	491	high	6871587	chromoarm	701	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	21675921	21676322	AT1TE71520	.	-	ATREP3	Helitron	RC	401	short	1439	high	6871951	chromoarm	300	no-CHH	no-CHH	.	.	.	.	.
Chr1	21676322	21676540	AT1TE71525	.	-	ATREP10D	Helitron	RC	218	short	1295	high	6872352	chromoarm	82	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	21680981	21681096	AT1TE71535	.	-	ATLINE2	L1	LINE	115	short	138	medium	6877011	chromoarm	668	no-CHH	no-CHH	.	.	.	.	.
Chr1	21681522	21682456	AT1TE71540	.	+	HELITRONY3	Helitron	RC	934	short	1399	high	6877552	chromoarm	1209	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	21682456	21682493	AT1TE71545	.	+	HELITRONY3	Helitron	RC	37	tiny	1399	high	6878486	chromoarm	2143	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	21683263	21683488	AT1TE71550	.	+	RathE1_cons	.	RathE1_cons	225	short	213	high	6879293	chromoarm	1262	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	21700576	21700681	AT1TE71610	.	-	ATCOPIA66	Copia	LTR	105	short	20	low	6896606	chromoarm	604	no-CHH	no-CHH	.	.	.	.	.
Chr1	21705755	21705924	AT1TE71620	.	-	ATCOPIA66	Copia	LTR	169	short	20	low	6901785	chromoarm	1482	no-CHH	no-CHH	.	.	.	.	.
Chr1	21705924	21705951	AT1TE71625	.	-	TA1_AT	Gypsy	LTR	27	tiny	3	low	6901954	chromoarm	1455	no-CHH	no-CHH	.	.	.	.	.
Chr1	21709586	21709942	AT1TE71635	.	-	HELITRON4	Helitron	RC	356	short	199	medium	6905616	chromoarm	1640	no-CHH	no-CHH	.	.	.	.	.
Chr1	21710248	21710625	AT1TE71640	.	-	ATDNA12T3_2	.	DNA	377	short	660	high	6906278	chromoarm	1058	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	21710816	21710892	AT1TE71645	.	+	TNAT1A	.	DNA	76	tiny	162	medium	6906846	chromoarm	791	no-CHH	no-CHH	.	.	.	.	.
Chr1	21719459	21719616	AT1TE71670	.	+	ATREP10	Helitron	RC	157	short	63	medium	6915489	chromoarm	543	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	21725049	21725710	AT1TE71680	.	+	ATREP7	Helitron	RC	661	short	164	medium	6921079	chromoarm	1663	no-CHH	no-CHH	.	.	.	.	.
Chr1	21725710	21725926	AT1TE71685	.	+	ATREP3	Helitron	RC	216	short	1439	high	6921740	chromoarm	1447	no-CHH	no-CHH	.	.	.	.	.
Chr1	21725926	21726790	AT1TE71690	.	+	ATREP10B	Helitron	RC	864	short	491	high	6921956	chromoarm	583	no-CHH	no-CHH	.	.	.	.	.
Chr1	21726790	21726831	AT1TE71695	.	-	ATREP4	Helitron	RC	41	tiny	832	high	6922820	chromoarm	542	no-CHH	no-CHH	.	.	.	.	.
Chr1	21731637	21732236	AT1TE71705	.	+	ATHATN6	HAT	DNA	599	short	43	low	6927667	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	21738387	21738688	AT1TE71720	.	+	ATREP4	Helitron	RC	301	short	832	high	6934417	chromoarm	222	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	21738688	21740552	AT1TE71725	.	+	HELITRONY3	Helitron	RC	1864	short	1399	high	6934718	chromoarm	523	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	21740552	21740591	AT1TE71730	.	+	HELITRONY3	Helitron	RC	39	tiny	1399	high	6936582	chromoarm	2387	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	21740591	21740634	AT1TE71735	.	-	ATREP5	Helitron	RC	43	tiny	624	high	6936621	chromoarm	2426	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	21741592	21741796	AT1TE71740	.	-	SIMPLEHAT1	HAT	DNA	204	short	56	medium	6937622	chromoarm	3427	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	21741796	21742041	AT1TE71745	.	-	ATDNAI27T9B	MuDR	DNA	245	short	43	low	6937826	chromoarm	3631	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	21744008	21744194	AT1TE71750	.	-	ATDNAI27T9C	MuDR	DNA	186	short	108	medium	6940038	chromoarm	5843	PolIV-and-RDR6-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	21744194	21745093	AT1TE71755	.	-	SIMPLEHAT1	HAT	DNA	899	short	56	medium	6940224	chromoarm	6029	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	21746488	21746511	AT1TE71760	.	+	ATREP10	Helitron	RC	23	tiny	63	medium	6942518	chromoarm	8323	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	21746511	21746739	AT1TE71765	.	+	ATREP10	Helitron	RC	228	short	63	medium	6942541	chromoarm	8346	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	21746739	21747327	AT1TE71770	.	-	ATHATN3	HAT	DNA	588	short	70	medium	6942769	chromoarm	8574	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	21748193	21753388	AT1TE71775	.	+	ATCOPIA8B	Copia	LTR	5195	long	8	low	6944223	chromoarm	6778	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	21748573	21750301	+	transcript_id-"a8b0c6c9-9733-43b8-ada1-7a8a87083492|59"
Chr1	21753389	21753542	AT1TE71780	.	-	ATCOPIA67	Copia	LTR	153	short	15	low	6949419	chromoarm	6624	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	21754300	21754352	AT1TE71785	.	-	VANDAL1N1	MuDR	DNA	52	tiny	52	medium	6950330	chromoarm	5814	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	21754362	21755189	AT1TE71790	.	-	VANDAL1N1	MuDR	DNA	827	short	52	medium	6950392	chromoarm	4977	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	21755189	21755255	AT1TE71795	.	-	VANDAL1N1	MuDR	DNA	66	tiny	52	medium	6951219	chromoarm	4911	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	21755256	21755276	AT1TE71800	.	-	VANDAL1N1	MuDR	DNA	21	tiny	52	medium	6951285	chromoarm	4890	.	.	.	.	.	.	.
Chr1	21755303	21755914	AT1TE71805	.	-	VANDAL1	MuDR	DNA	611	short	80	medium	6951333	chromoarm	4252	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	21755962	21756732	AT1TE71810	.	-	ATREP3	Helitron	RC	770	short	1439	high	6951992	chromoarm	3434	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	21756213	21756635	AT1TE71815	.	-	VANDAL1N1	MuDR	DNA	422	short	52	medium	6952243	chromoarm	3531	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	21756732	21756999	AT1TE71820	.	-	VANDAL2N1	MuDR	DNA	267	short	51	medium	6952762	chromoarm	3167	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	21756999	21758625	AT1TE71825	.	-	VANDAL1N1	MuDR	DNA	1626	short	52	medium	6953029	chromoarm	1541	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	21758659	21759682	AT1TE71830	.	+	SIMPLEHAT2	HAT	DNA	1023	short	73	medium	6954689	chromoarm	484	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	21765452	21765598	AT1TE71840	.	+	ATCOPIA87	Copia	LTR	146	short	19	low	6961482	chromoarm	1687	no-CHH	no-CHH	.	.	.	.	.
Chr1	21776812	21776839	AT1TE71880	.	-	ATREP6	Helitron	RC	28	tiny	181	medium	6972841	chromoarm	46	.	.	.	.	.	.	.
Chr1	21776840	21777347	AT1TE71885	.	-	ATREP6	Helitron	RC	508	short	181	medium	6972869	chromoarm	74	.	.	.	.	.	.	.
Chr1	21779493	21779632	AT1TE71890	.	+	HELITRONY1D	Helitron	RC	140	short	756	high	6975522	chromoarm	941	.	.	.	.	.	.	.
Chr1	21779633	21779960	AT1TE71895	.	+	HELITRONY3	Helitron	RC	328	short	1399	high	6975662	chromoarm	613	.	.	.	.	.	.	.
Chr1	21784072	21784217	AT1TE71905	.	+	ATCOPIA87	Copia	LTR	146	short	19	low	6980101	chromoarm	278	.	.	.	.	.	.	.
Chr1	21786594	21786755	AT1TE71910	.	+	ATCOPIA87	Copia	LTR	162	short	19	low	6982623	chromoarm	2800	.	.	.	.	.	.	.
Chr1	21786756	21787461	AT1TE71915	.	+	BRODYAGA2	MuDR	DNA	706	short	525	high	6982785	chromoarm	2962	.	.	.	.	.	.	.
Chr1	21787462	21787701	AT1TE71920	.	+	BRODYAGA2	MuDR	DNA	240	short	525	high	6983491	chromoarm	3668	.	.	.	.	.	.	.
Chr1	21788068	21788193	AT1TE71925	.	-	ATREP6	Helitron	RC	126	short	181	medium	6984097	chromoarm	3946	.	.	.	.	.	.	.
Chr1	21788194	21788858	AT1TE71930	.	-	ATREP6	Helitron	RC	665	short	181	medium	6984223	chromoarm	3281	.	.	.	.	.	.	.
Chr1	21788859	21788917	AT1TE71935	.	-	ATREP6	Helitron	RC	59	tiny	181	medium	6984888	chromoarm	3222	.	.	.	.	.	.	.
Chr1	21791187	21791533	AT1TE71940	.	+	HELITRONY3	Helitron	RC	347	short	1399	high	6987216	chromoarm	606	.	.	.	.	.	.	.
Chr1	21796938	21801751	AT1TE71950	.	-	ATRE1	Copia	LTR	4814	medium	22	low	6992967	chromoarm	1482	.	.	.	.	.	.	.
Chr1	21801805	21801951	AT1TE71955	.	+	ATCOPIA87	Copia	LTR	147	short	19	low	6997834	chromoarm	1648	.	.	.	.	.	.	.
Chr1	21813070	21813097	AT1TE71990	.	-	ATREP6	Helitron	RC	28	tiny	181	medium	7009099	chromoarm	46	.	.	.	.	.	.	.
Chr1	21813098	21813605	AT1TE71995	.	-	ATREP6	Helitron	RC	508	short	181	medium	7009127	chromoarm	74	.	.	.	.	.	.	.
Chr1	21815891	21816218	AT1TE72000	.	+	HELITRONY3	Helitron	RC	328	short	1399	high	7011920	chromoarm	613	.	.	.	.	.	.	.
Chr1	21820330	21820475	AT1TE72010	.	+	ATCOPIA87	Copia	LTR	146	short	19	low	7016359	chromoarm	676	.	.	.	.	.	.	.
Chr1	21822852	21823013	AT1TE72015	.	+	ATCOPIA87	Copia	LTR	162	short	19	low	7018881	chromoarm	303	.	.	.	.	.	.	.
Chr1	21823013	21823719	AT1TE72020	.	+	BRODYAGA2	MuDR	DNA	706	short	525	high	7019043	chromoarm	465	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	21823720	21823959	AT1TE72025	.	+	BRODYAGA2	MuDR	DNA	240	short	525	high	7019749	chromoarm	1171	.	.	.	.	.	.	.
Chr1	21824336	21824375	AT1TE72030	.	+	TAG3N1	HAT	DNA	39	tiny	97	medium	7020366	chromoarm	1788	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	21824452	21825116	AT1TE72035	.	-	ATREP6	Helitron	RC	665	short	181	medium	7020481	chromoarm	1903	.	.	.	.	.	.	.
Chr1	21825117	21825175	AT1TE72040	.	-	ATREP6	Helitron	RC	59	tiny	181	medium	7021146	chromoarm	2568	.	.	.	.	.	.	.
Chr1	21827222	21827444	AT1TE72045	.	+	ATREP9	Helitron	RC	223	short	201	high	7023251	chromoarm	953	.	.	.	.	.	.	.
Chr1	21827445	21827791	AT1TE72050	.	+	HELITRONY3	Helitron	RC	347	short	1399	high	7023474	chromoarm	606	.	.	.	.	.	.	.
Chr1	21833196	21838009	AT1TE72060	.	-	ATRE1	Copia	LTR	4814	medium	22	low	7029225	chromoarm	1482	.	.	.	.	.	.	.
Chr1	21838063	21838209	AT1TE72065	.	+	ATCOPIA87	Copia	LTR	147	short	19	low	7034092	chromoarm	1648	.	.	.	.	.	.	.
Chr1	21853673	21853894	AT1TE72110	.	+	ATSINE4	.	SINE	221	short	98	medium	7049703	chromoarm	289	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	21856785	21856929	AT1TE72115	.	-	ATREP19	.	DNA	144	short	189	medium	7052815	chromoarm	171	no-CHH	no-CHH	.	.	.	.	.
Chr1	21856929	21857822	AT1TE72120	.	+	HELITRONY1B	Helitron	RC	893	short	414	high	7052959	chromoarm	315	no-RdDM	no-CHH	.	.	.	.	.
Chr1	21857822	21857845	AT1TE72125	.	-	HELITRONY3	Helitron	RC	23	tiny	1399	high	7053852	chromoarm	1208	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	21862879	21863235	AT1TE72135	.	+	ATREP8	Helitron	RC	356	short	75	medium	7058909	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	21872093	21872178	AT1TE72160	.	-	HELITRONY1D	Helitron	RC	86	tiny	756	high	7068122	chromoarm	565	.	.	.	.	.	.	.
Chr1	21872178	21872788	AT1TE72165	.	+	ATREP10D	Helitron	RC	610	short	1295	high	7068208	chromoarm	651	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	21872790	21873779	AT1TE72170	.	-	ATHILA4	Gypsy	LTR	989	short	250	high	7068820	chromoarm	303	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	21873779	21873966	AT1TE72175	.	-	BOMZH2	MuDR	DNA	187	short	47	low	7069809	chromoarm	116	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	21877178	21877356	AT1TE72185	.	-	HELITRONY1A	Helitron	RC	178	short	271	high	7073208	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	21891493	21891623	AT1TE72230	.	+	ATENSPM5	En-Spm	DNA	130	short	111	medium	7087523	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	21911673	21911704	AT1TE72300	.	-	ATREP10A	Helitron	RC	31	tiny	279	high	7107703	chromoarm	643	no-CHH	no-CHH	.	.	.	.	.
Chr1	21911704	21911772	AT1TE72305	.	+	BRODYAGA2	MuDR	DNA	68	tiny	525	high	7107734	chromoarm	674	no-CHH	no-CHH	.	.	.	.	.
Chr1	21911772	21913054	AT1TE72310	.	-	ATREP10D	Helitron	RC	1282	short	1295	high	7107802	chromoarm	742	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	21918225	21918285	AT1TE72320	.	-	HELITRONY3	Helitron	RC	60	tiny	1399	high	7114255	chromoarm	1813	no-CHH	no-CHH	.	.	.	.	.
Chr1	21918285	21919763	AT1TE72325	.	+	ATREP1	Helitron	RC	1478	short	498	high	7114315	chromoarm	335	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	21918430	21918995	AT1TE72330	.	+	ATREP2	Helitron	RC	566	short	164	medium	7114459	chromoarm	1103	.	.	.	.	.	.	.
Chr1	21929378	21929504	AT1TE72360	.	-	HELITRONY3	Helitron	RC	126	short	1399	high	7125408	chromoarm	145	no-CHH	no-CHH	.	.	.	.	.
Chr1	21929508	21930036	AT1TE72365	.	-	ATTIR16T3A	.	DNA	528	short	106	medium	7125538	chromoarm	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	21932470	21932882	AT1TE72370	.	-	BRODYAGA2	MuDR	DNA	412	short	525	high	7128500	chromoarm	67	no-CHH	no-CHH	.	.	.	.	.
Chr1	21932882	21932948	AT1TE72375	.	-	ATREP10D	Helitron	RC	66	tiny	1295	high	7128912	chromoarm	72	no-CHH	no-CHH	.	.	.	.	.
Chr1	21941896	21942745	AT1TE72400	.	+	ATREP5	Helitron	RC	849	short	624	high	7137926	chromoarm	112	no-CHH	no-CHH	.	.	.	.	.
Chr1	21942745	21942788	AT1TE72405	.	-	BRODYAGA1A	MuDR	DNA	43	tiny	586	high	7138775	chromoarm	961	no-CHH	no-CHH	.	.	.	.	.
Chr1	21942924	21943152	AT1TE72410	.	-	HELITRONY1E	Helitron	RC	228	short	447	high	7138954	chromoarm	1140	no-CHH	no-CHH	.	.	.	.	.
Chr1	21943152	21944193	AT1TE72415	.	+	ATREP15	Helitron	RC	1041	short	1003	high	7139182	chromoarm	495	no-CHH	no-CHH	.	.	.	.	.
Chr1	21944193	21944712	AT1TE72420	.	-	HELITRONY1A	Helitron	RC	519	short	271	high	7140223	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	21946022	21946153	AT1TE72425	.	-	ATREP10A	Helitron	RC	131	short	279	high	7142052	chromoarm	801	no-CHH	no-CHH	.	.	.	.	.
Chr1	21946153	21946200	AT1TE72430	.	+	ATREP3	Helitron	RC	47	tiny	1439	high	7142183	chromoarm	932	no-CHH	no-CHH	.	.	.	.	.
Chr1	21946200	21947011	AT1TE72435	.	+	ATREP6	Helitron	RC	811	short	181	medium	7142230	chromoarm	979	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	21947011	21947094	AT1TE72440	.	+	ATREP6	Helitron	RC	83	tiny	181	medium	7143041	chromoarm	1790	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	21947094	21947150	AT1TE72445	.	+	ATREP7	Helitron	RC	56	tiny	164	medium	7143124	chromoarm	1873	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	21947150	21947270	AT1TE72450	.	-	RathE3_cons	.	RathE3_cons	120	short	104	medium	7143180	chromoarm	1929	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	21948130	21948369	AT1TE72455	.	-	HELITRONY1B	Helitron	RC	239	short	414	high	7144160	chromoarm	2368	no-CHH	no-CHH	.	.	.	.	.
Chr1	21948369	21948560	AT1TE72460	.	-	ATREP15	Helitron	RC	191	short	1003	high	7144399	chromoarm	2177	no-CHH	no-CHH	.	.	.	.	.
Chr1	21948560	21950006	AT1TE72465	.	+	HELITRONY3	Helitron	RC	1446	short	1399	high	7144590	chromoarm	731	no-CHH	no-CHH	.	.	.	.	.
Chr1	21950006	21950520	AT1TE72470	.	+	ATREP8	Helitron	RC	514	short	75	medium	7146036	chromoarm	217	no-CHH	no-CHH	.	.	.	.	.
Chr1	21956885	21957049	AT1TE72490	.	-	RathE1_cons	.	RathE1_cons	164	short	213	high	7152915	chromoarm	3493	no-CHH	no-CHH	.	.	.	.	.
Chr1	21957238	21957523	AT1TE72495	.	-	ATDNA2T9C	MuDR	DNA	285	short	242	high	7153268	chromoarm	3846	no-CHH	no-CHH	.	.	.	.	.
Chr1	21957836	21957975	AT1TE72500	.	-	RathE1_cons	.	RathE1_cons	140	short	213	high	7153865	chromoarm	4443	.	.	.	.	.	.	.
Chr1	21960307	21960543	AT1TE72505	.	-	ATREP10D	Helitron	RC	236	short	1295	high	7156337	chromoarm	6915	no-CHH	no-CHH	.	.	.	.	.
Chr1	21960544	21961235	AT1TE72510	.	-	ATREP11	Helitron	RC	691	short	841	high	7156574	chromoarm	6991	no-CHH	no-CHH	.	.	.	.	.
Chr1	21972535	21972703	AT1TE72550	.	-	RathE1_cons	.	RathE1_cons	168	short	213	high	7168565	chromoarm	223	no-CHH	no-CHH	.	.	.	.	.
Chr1	21977155	21977749	AT1TE72560	.	+	ATREP10D	Helitron	RC	594	short	1295	high	7173185	chromoarm	2664	no-CHH	no-CHH	.	.	.	.	.
Chr1	21990497	21990869	AT1TE72600	.	+	ATMUNX1	MuDR	DNA	372	short	155	medium	7186527	chromoarm	387	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr1	21990869	21990894	AT1TE72605	.	-	ATMUNX1	MuDR	DNA	25	tiny	155	medium	7186899	chromoarm	759	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	21991153	21991448	AT1TE72610	.	-	SIMPLEHAT1	HAT	DNA	296	short	56	medium	7187182	chromoarm	1042	.	.	LowExpressed	.	.	.	.
Chr1	21991448	21992506	AT1TE72615	.	-	ATHAT1	HAT	DNA	1058	short	105	medium	7187478	chromoarm	1074	no-RdDM	no-RdDM	ExpressedAndAnnotated	21992700	21991403	-	transcript_id-"828122e4-c920-49b9-b4f5-f017d433eced|5"
Chr1	21992782	21992974	AT1TE72620	.	-	SIMPLEHAT1	HAT	DNA	192	short	56	medium	7188812	chromoarm	606	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	21995239	21995403	AT1TE72625	.	-	ARNOLDY1	MuDR	DNA	164	short	237	high	7191269	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	21995403	21996608	AT1TE72630	.	+	ARNOLDY1	MuDR	DNA	1205	short	237	high	7191433	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	22003473	22003587	AT1TE72650	.	-	ATREP9	Helitron	RC	114	short	201	high	7199503	chromoarm	88	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	22003587	22004746	AT1TE72655	.	+	ATREP4	Helitron	RC	1159	short	832	high	7199617	chromoarm	202	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	22004746	22004939	AT1TE72660	.	+	ATREP10B	Helitron	RC	193	short	491	high	7200776	chromoarm	24	no-CHH	no-CHH	.	.	.	.	.
Chr1	22004939	22004966	AT1TE72665	.	+	ATREP6	Helitron	RC	27	tiny	181	medium	7200969	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	22022628	22022898	AT1TE72720	.	-	ATREP6	Helitron	RC	270	short	181	medium	7218658	chromoarm	335	no-CHH	no-CHH	.	.	.	.	.
Chr1	22022898	22024097	AT1TE72725	.	-	HELITRONY1E	Helitron	RC	1199	short	447	high	7218928	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	22025541	22025612	AT1TE72730	.	-	ATREP15	Helitron	RC	71	tiny	1003	high	7221571	chromoarm	120	no-CHH	no-CHH	.	.	.	.	.
Chr1	22025614	22026334	AT1TE72735	.	-	ATREP4	Helitron	RC	720	short	832	high	7221644	chromoarm	193	no-CHH	no-CHH	.	.	.	.	.
Chr1	22040690	22041829	AT1TE72780	.	-	ATREP10D	Helitron	RC	1139	short	1295	high	7236720	chromoarm	478	no-CHH	no-CHH	.	.	.	.	.
Chr1	22041829	22042009	AT1TE72785	.	+	ATREP3	Helitron	RC	180	short	1439	high	7237859	chromoarm	298	no-CHH	no-CHH	.	.	.	.	.
Chr1	22043295	22043403	AT1TE72790	.	-	ATLINE1A	L1	LINE	108	short	289	high	7239325	chromoarm	480	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	22058990	22059068	AT1TE72840	.	+	ATSINE4	.	SINE	78	tiny	98	medium	7255020	chromoarm	355	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	22060008	22060730	AT1TE72845	.	-	BRODYAGA2	MuDR	DNA	722	short	525	high	7256038	chromoarm	186	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	22060730	22060955	AT1TE72850	.	-	BRODYAGA2	MuDR	DNA	225	short	525	high	7256760	chromoarm	127	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	22063189	22063577	AT1TE72855	.	-	ATREP5	Helitron	RC	388	short	624	high	7259219	chromoarm	1708	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	22063742	22063902	AT1TE72860	.	+	ARNOLD1	MuDR	DNA	160	short	39	low	7259772	chromoarm	1991	no-CHH	no-CHH	.	.	.	.	.
Chr1	22064021	22064308	AT1TE72865	.	-	DT1	Mariner	DNA	287	short	123	medium	7260051	chromoarm	1585	no-CHH	no-CHH	.	.	.	.	.
Chr1	22069211	22069853	AT1TE72875	.	+	ATLINEIII	L1	LINE	642	short	196	medium	7265241	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	22072491	22072664	AT1TE72880	.	-	ATCOPIA16	Copia	LTR	173	short	12	low	7268521	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	22086295	22087917	AT1TE72920	.	+	HELITRONY3	Helitron	RC	1622	short	1399	high	7282325	chromoarm	2451	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	22089130	22089250	AT1TE72925	.	-	ATREP5	Helitron	RC	120	short	624	high	7285160	chromoarm	1118	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	22089250	22089743	AT1TE72930	.	+	HELITRONY1D	Helitron	RC	493	short	756	high	7285280	chromoarm	625	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	22100643	22105329	AT1TE72970	.	-	ATCOPIA5	Copia	LTR	4686	medium	16	low	7296673	chromoarm	4209	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	22105329	22105362	AT1TE72975	.	-	ATCOPIA84	Copia	LTR	33	tiny	10	low	7301359	chromoarm	8630	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	22105362	22106636	AT1TE72980	.	-	SIMPLEHAT2	HAT	DNA	1274	short	73	medium	7301392	chromoarm	7356	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	22106636	22106706	AT1TE72985	.	-	HELITRONY3	Helitron	RC	70	tiny	1399	high	7302666	chromoarm	7286	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	22107438	22107932	AT1TE72990	.	+	VANDAL18NA	MuDR	DNA	494	short	24	low	7303468	chromoarm	6060	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	22108380	22108908	AT1TE72995	.	+	VANDAL18NB	MuDR	DNA	528	short	19	low	7304410	chromoarm	5084	no-CHH	DCL3-RdDM	.	.	.	.	.
Chr1	22108908	22109413	AT1TE73000	.	+	ATREP10D	Helitron	RC	505	short	1295	high	7304938	chromoarm	4579	no-CHH	no-CHH	.	.	.	.	.
Chr1	22111911	22111958	AT1TE73005	.	-	ATREP5	Helitron	RC	47	tiny	624	high	7307941	chromoarm	2034	no-RdDM	no-CHH	.	.	.	.	.
Chr1	22111958	22112753	AT1TE73010	.	+	ATN9_1	MuDR	DNA	795	short	65	medium	7307988	chromoarm	1239	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	22112754	22113280	AT1TE73015	.	+	ATHPOGON2	Pogo	DNA	527	short	27	low	7308783	chromoarm	712	.	.	.	.	.	.	.
Chr1	22113280	22113476	AT1TE73020	.	+	ATHPOGON1	Pogo	DNA	196	short	174	medium	7309310	chromoarm	516	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	22113476	22113512	AT1TE73025	.	-	HELITRONY3	Helitron	RC	36	tiny	1399	high	7309506	chromoarm	480	no-CHH	no-CHH	.	.	.	.	.
Chr1	22125692	22125815	AT1TE73060	.	+	ATHATN6	HAT	DNA	123	short	43	low	7321722	chromoarm	1990	no-RdDM	no-CHH	.	.	.	.	.
Chr1	22125847	22126128	AT1TE73065	.	+	ATHAT3	HAT	DNA	281	short	23	low	7321877	chromoarm	2145	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	22131600	22131939	AT1TE73075	.	+	HELITRONY1D	Helitron	RC	339	short	756	high	7327630	chromoarm	7342	no-CHH	no-CHH	.	.	.	.	.
Chr1	22134200	22135374	AT1TE73080	.	-	ATREP10D	Helitron	RC	1174	short	1295	high	7330230	chromoarm	3907	no-CHH	no-CHH	.	.	.	.	.
Chr1	22136781	22137301	AT1TE73085	.	+	ATREP15	Helitron	RC	520	short	1003	high	7332811	chromoarm	1980	no-CHH	no-CHH	.	.	.	.	.
Chr1	22154812	22155284	AT1TE73140	.	-	ATREP5	Helitron	RC	472	short	624	high	7350842	chromoarm	297	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	22162431	22162602	AT1TE73160	.	+	RathE1_cons	.	RathE1_cons	171	short	213	high	7358461	chromoarm	166	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	22162738	22162956	AT1TE73165	.	-	ATTIRTA1	Tc1	DNA	218	short	95	medium	7358768	chromoarm	473	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	22163232	22163448	AT1TE73170	.	+	VANDAL22	MuDR	DNA	216	short	48	low	7359262	chromoarm	967	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	22163556	22163874	AT1TE73175	.	+	VANDAL22	MuDR	DNA	318	short	48	low	7359586	chromoarm	1291	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	22163874	22164107	AT1TE73180	.	+	VANDAL22	MuDR	DNA	233	short	48	low	7359904	chromoarm	1609	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	22165019	22165043	AT1TE73185	.	+	HELITRONY3	Helitron	RC	24	tiny	1399	high	7361049	chromoarm	2754	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	22165043	22166347	AT1TE73190	.	-	HELITRONY3	Helitron	RC	1304	short	1399	high	7361073	chromoarm	2154	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	22166347	22166384	AT1TE73195	.	+	HELITRONY3	Helitron	RC	37	tiny	1399	high	7362377	chromoarm	2117	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	22166385	22166471	AT1TE73200	.	+	VANDAL20	MuDR	DNA	87	tiny	51	medium	7362414	chromoarm	2030	.	.	.	.	.	.	.
Chr1	22167789	22167964	AT1TE73205	.	+	VANDAL20	MuDR	DNA	175	short	51	medium	7363819	chromoarm	537	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	22172165	22172186	AT1TE73215	.	+	ATGP1	Gypsy	LTR	21	tiny	144	medium	7368195	chromoarm	1516	no-CHH	no-CHH	.	.	.	.	.
Chr1	22172186	22172784	AT1TE73220	.	+	ATGP1	Gypsy	LTR	598	short	144	medium	7368216	chromoarm	1394	no-CHH	no-CHH	.	.	.	.	.
Chr1	22181924	22182082	AT1TE73250	.	-	BRODYAGA1	MuDR	DNA	158	short	251	high	7377954	chromoarm	1851	no-CHH	no-CHH	.	.	.	.	.
Chr1	22182082	22182645	AT1TE73255	.	-	ATREP3	Helitron	RC	563	short	1439	high	7378112	chromoarm	2009	no-CHH	no-CHH	.	.	.	.	.
Chr1	22182645	22183141	AT1TE73260	.	-	ATLINEIII	L1	LINE	496	short	196	medium	7378675	chromoarm	2572	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	22191632	22191651	AT1TE73290	.	+	HELITRONY1D	Helitron	RC	20	tiny	756	high	7387661	chromoarm	236	.	.	.	.	.	.	.
Chr1	22191651	22191820	AT1TE73295	.	+	HELITRONY1E	Helitron	RC	169	short	447	high	7387681	chromoarm	256	no-CHH	no-CHH	.	.	.	.	.
Chr1	22191820	22192616	AT1TE73300	.	+	ATREP2	Helitron	RC	796	short	164	medium	7387850	chromoarm	391	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	22192616	22192718	AT1TE73305	.	+	ATREP3	Helitron	RC	102	short	1439	high	7388646	chromoarm	289	no-CHH	no-CHH	.	.	.	.	.
Chr1	22202084	22202471	AT1TE73330	.	+	VANDAL17	MuDR	DNA	387	short	178	medium	7398114	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	22206029	22206450	AT1TE73340	.	+	ATSINE2A	.	SINE	421	short	33	low	7402059	chromoarm	788	no-CHH	no-CHH	.	.	.	.	.
Chr1	22206450	22208079	AT1TE73345	.	+	ATREP10D	Helitron	RC	1629	short	1295	high	7402480	chromoarm	252	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	22208079	22208211	AT1TE73350	.	+	HELITRONY3	Helitron	RC	132	short	1399	high	7404109	chromoarm	120	no-CHH	no-CHH	.	.	.	.	.
Chr1	22224561	22224825	AT1TE73400	.	-	RP1_AT	.	DNA	264	short	87	medium	7420591	chromoarm	304	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	22226782	22226866	AT1TE73405	.	-	RathE2_cons	.	RathE2_cons	84	tiny	74	medium	7422812	chromoarm	18	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	22230964	22231044	AT1TE73415	.	-	ATLINE1_3A	L1	LINE	80	tiny	160	medium	7426994	chromoarm	216	no-CHH	no-RdDM	.	.	.	.	.
Chr1	22231044	22231065	AT1TE73420	.	-	ATLINEIII	L1	LINE	21	tiny	196	medium	7427074	chromoarm	296	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	22231070	22232773	AT1TE73425	.	-	ATLINEIII	L1	LINE	1703	short	196	medium	7427100	chromoarm	322	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	22236786	22236931	AT1TE73435	.	-	ATLINE1A	L1	LINE	145	short	289	high	7432816	chromoarm	1180	no-CHH	no-CHH	.	.	.	.	.
Chr1	22251117	22252261	AT1TE73480	.	-	ATREP11	Helitron	RC	1144	short	841	high	7447147	chromoarm	1561	no-CHH	no-CHH	.	.	.	.	.
Chr1	22252261	22252498	AT1TE73485	.	+	ATREP6	Helitron	RC	237	short	181	medium	7448291	chromoarm	1906	no-CHH	no-CHH	.	.	.	.	.
Chr1	22253586	22254233	AT1TE73490	.	+	HELITRONY1E	Helitron	RC	647	short	447	high	7449616	chromoarm	171	no-CHH	no-CHH	.	.	.	.	.
Chr1	22257717	22258860	AT1TE73500	.	-	ATREP10D	Helitron	RC	1143	short	1295	high	7453747	chromoarm	268	no-CHH	no-CHH	.	.	.	.	.
Chr1	22272406	22272850	AT1TE73540	.	-	ATREP1	Helitron	RC	444	short	498	high	7468436	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	22275158	22275461	AT1TE73545	.	+	ATREP1	Helitron	RC	303	short	498	high	7471188	chromoarm	138	no-CHH	no-CHH	.	.	.	.	.
Chr1	22282378	22282471	AT1TE73560	.	-	ATREP4	Helitron	RC	93	tiny	832	high	7478408	chromoarm	1924	no-CHH	no-CHH	.	.	.	.	.
Chr1	22282471	22282555	AT1TE73565	.	+	HELITRONY1B	Helitron	RC	84	tiny	414	high	7478501	chromoarm	2017	no-CHH	no-CHH	.	.	.	.	.
Chr1	22282555	22283316	AT1TE73570	.	+	ATREP15	Helitron	RC	761	short	1003	high	7478585	chromoarm	2101	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	22290384	22291150	AT1TE73590	.	+	ATREP4	Helitron	RC	766	short	832	high	7486414	chromoarm	194	no-CHH	no-CHH	.	.	.	.	.
Chr1	22318208	22318324	AT1TE73680	.	-	ATDNA12T3_2	.	DNA	116	short	660	high	7514238	chromoarm	1341	no-CHH	no-CHH	.	.	.	.	.
Chr1	22320145	22320435	AT1TE73685	.	-	BRODYAGA1A	MuDR	DNA	290	short	586	high	7516175	chromoarm	3278	no-CHH	no-CHH	.	.	.	.	.
Chr1	22321864	22322368	AT1TE73690	.	+	ATDNA2T9C	MuDR	DNA	504	short	242	high	7517894	chromoarm	2438	no-CHH	no-CHH	.	.	.	.	.
Chr1	22364799	22364825	AT1TE73830	.	-	ATREP10B	Helitron	RC	26	tiny	491	high	7560829	chromoarm	945	no-CHH	no-CHH	.	.	.	.	.
Chr1	22364825	22365559	AT1TE73835	.	-	HELITRONY3	Helitron	RC	734	short	1399	high	7560855	chromoarm	272	no-CHH	no-CHH	.	.	.	.	.
Chr1	22376060	22376084	AT1TE73860	.	+	HELITRONY1D	Helitron	RC	24	tiny	756	high	7572090	chromoarm	567	no-CHH	no-CHH	.	.	.	.	.
Chr1	22376084	22376877	AT1TE73865	.	+	ATREP15	Helitron	RC	793	short	1003	high	7572114	chromoarm	591	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	22379759	22379837	AT1TE73870	.	+	ATCOPIA21	Copia	LTR	78	tiny	14	low	7575789	chromoarm	355	no-CHH	no-CHH	.	.	.	.	.
Chr1	22400914	22401145	AT1TE73940	.	-	ATLINE1_4	L1	LINE	231	short	102	medium	7596944	chromoarm	98	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	22417258	22417378	AT1TE73990	.	+	HELITRONY2	Helitron	RC	120	short	198	medium	7613288	chromoarm	760	no-CHH	no-CHH	.	.	.	.	.
Chr1	22417389	22418756	AT1TE73995	.	+	HELITRONY3	Helitron	RC	1367	short	1399	high	7613419	chromoarm	891	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	22424410	22424583	AT1TE74005	.	+	ATDNAI27T9C	MuDR	DNA	173	short	108	medium	7620440	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	22428419	22428621	AT1TE74015	.	-	BRODYAGA1A	MuDR	DNA	202	short	586	high	7624449	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	22449850	22449882	AT1TE74080	.	-	BRODYAGA2	MuDR	DNA	32	tiny	525	high	7645880	chromoarm	463	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr1	22449882	22452429	AT1TE74085	.	+	ATREP3	Helitron	RC	2547	medium	1439	high	7645912	chromoarm	143	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	22454208	22455282	AT1TE74090	.	-	ATREP10D	Helitron	RC	1074	short	1295	high	7650238	chromoarm	37	no-CHH	no-CHH	.	.	.	.	.
Chr1	22456416	22456546	AT1TE74095	.	+	ATTIRX1C	.	DNA	130	short	39	low	7652446	chromoarm	268	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	22457882	22458911	AT1TE74100	.	-	ATREP5	Helitron	RC	1029	short	624	high	7653912	chromoarm	160	no-CHH	no-CHH	.	.	.	.	.
Chr1	22458911	22458992	AT1TE74105	.	+	HELITRONY3	Helitron	RC	81	tiny	1399	high	7654941	chromoarm	79	no-CHH	no-CHH	.	.	.	.	.
Chr1	22482658	22483139	AT1TE74180	.	-	ATMU7	MuDR	DNA	481	short	32	low	7678688	chromoarm	578	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	22489775	22490410	AT1TE74200	.	+	HELITRONY3	Helitron	RC	635	short	1399	high	7685805	chromoarm	19	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	22497362	22498170	AT1TE74220	.	+	HELITRONY3	Helitron	RC	808	short	1399	high	7693392	chromoarm	343	no-CHH	no-CHH	.	.	.	.	.
Chr1	22502619	22502971	AT1TE74230	.	+	AT9TSD1	MuDR	DNA	352	short	55	medium	7698649	chromoarm	143	no-CHH	no-CHH	.	.	.	.	.
Chr1	22503366	22504312	AT1TE74235	.	-	ATREP4	Helitron	RC	946	short	832	high	7699396	chromoarm	388	no-CHH	no-CHH	.	.	.	.	.
Chr1	22512714	22513516	AT1TE74260	.	+	HELITRONY1B	Helitron	RC	802	short	414	high	7708744	chromoarm	99	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	22513703	22513994	AT1TE74265	.	+	BRODYAGA1A	MuDR	DNA	291	short	586	high	7709733	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	22520227	22520331	AT1TE74280	.	-	HELITRONY3	Helitron	RC	104	short	1399	high	7716257	chromoarm	2172	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	22521081	22521555	AT1TE74285	.	-	TAT1_ATH	Gypsy	LTR	474	short	87	medium	7717111	chromoarm	2133	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	22521732	22522106	AT1TE74290	.	+	ATTIRX1B	.	DNA	374	short	44	low	7717762	chromoarm	1582	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	22522106	22522136	AT1TE74295	.	+	ARNOLDY2	MuDR	DNA	30	tiny	288	high	7718136	chromoarm	1552	no-CHH	no-CHH	.	.	.	.	.
Chr1	22522918	22523365	AT1TE74300	.	-	BRODYAGA1A	MuDR	DNA	447	short	586	high	7718948	chromoarm	323	no-CHH	no-CHH	.	.	.	.	.
Chr1	22542139	22542307	AT1TE74360	.	+	RathE1_cons	.	RathE1_cons	169	short	213	high	7738168	chromoarm	620	.	.	.	.	.	.	.
Chr1	22545586	22546987	AT1TE74370	.	+	ATREP11	Helitron	RC	1401	short	841	high	7741616	chromoarm	1148	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	22546987	22547057	AT1TE74375	.	-	ATREP4	Helitron	RC	70	tiny	832	high	7743017	chromoarm	1078	no-CHH	no-CHH	.	.	.	.	.
Chr1	22551318	22551552	AT1TE74385	.	-	ATCOPIA60	Copia	LTR	234	short	4	low	7747348	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	22562535	22562639	AT1TE74420	.	+	BOMZH2	MuDR	DNA	104	short	47	low	7758565	chromoarm	393	no-RdDM	no-CHH	.	.	.	.	.
Chr1	22562639	22562684	AT1TE74425	.	-	ATMU6N1	MuDR	DNA	45	tiny	39	low	7758669	chromoarm	348	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	22562684	22563702	AT1TE74430	.	-	ATMU6N1	MuDR	DNA	1018	short	39	low	7758714	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	22563703	22563757	AT1TE74435	.	+	ATMU6N1	MuDR	DNA	55	tiny	39	low	7759732	chromoarm	282	.	.	.	.	.	.	.
Chr1	22578201	22578256	AT1TE74480	.	-	HELITRONY1D	Helitron	RC	55	tiny	756	high	7774231	chromoarm	694	no-CHH	no-CHH	.	.	.	.	.
Chr1	22578256	22578668	AT1TE74485	.	-	HELITRONY1D	Helitron	RC	412	short	756	high	7774286	chromoarm	282	no-CHH	no-CHH	.	.	.	.	.
Chr1	22592371	22593721	AT1TE74530	.	-	ATREP10D	Helitron	RC	1350	short	1295	high	7788401	chromoarm	34	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	22597440	22598073	AT1TE74540	.	-	ATREP11	Helitron	RC	633	short	841	high	7793470	chromoarm	1591	no-CHH	no-CHH	.	.	.	.	.
Chr1	22606310	22606462	AT1TE74570	.	+	ATREP5	Helitron	RC	152	short	624	high	7802340	chromoarm	94	no-CHH	no-CHH	.	.	.	.	.
Chr1	22606463	22607478	AT1TE74575	.	+	ATN9_1	MuDR	DNA	1016	short	65	medium	7802492	chromoarm	235	.	.	.	.	.	.	.
Chr1	22615988	22616097	AT1TE74600	.	+	ATCOPIA60	Copia	LTR	109	short	4	low	7812018	chromoarm	45	no-CHH	no-CHH	.	.	.	.	.
Chr1	22620327	22620536	AT1TE74610	.	+	HELITRONY1B	Helitron	RC	209	short	414	high	7816357	chromoarm	609	no-CHH	no-CHH	.	.	.	.	.
Chr1	22620536	22627023	AT1TE74615	.	-	ATREP3	Helitron	RC	6487	long	1439	high	7816566	chromoarm	0	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	22622852	22622960	AT1TE74620	.	-	ATREP4	Helitron	RC	108	short	832	high	7818882	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	22627023	22627134	AT1TE74630	.	+	BRODYAGA1A	MuDR	DNA	111	short	586	high	7823053	chromoarm	1391	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	22627134	22627210	AT1TE74635	.	+	ATREP10A	Helitron	RC	76	tiny	279	high	7823164	chromoarm	1315	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	22627210	22627239	AT1TE74640	.	-	ATREP10B	Helitron	RC	29	tiny	491	high	7823240	chromoarm	1286	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	22637087	22637627	AT1TE74670	.	+	HELITRONY1B	Helitron	RC	540	short	414	high	7833117	chromoarm	239	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr1	22693954	22699336	AT1TE74860	.	-	HARBINGER	Harbinger	DNA	5382	long	90	medium	7889984	chromoarm	815	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	22697331,22699058	22696662,22696670	-,-	transcript_id-"ff8eb9a5-bbc5-4e2e-abec-163ef5e4a35e|40",transcript_id-"5874fa55-b304-4f12-9dd8-bdaa05b26335|3"
Chr1	22712431	22713169	AT1TE74900	.	+	ATREP3	Helitron	RC	738	short	1439	high	7908461	chromoarm	399	no-CHH	no-CHH	.	.	.	.	.
Chr1	22731395	22731485	AT1TE74960	.	-	ATHILA7	Gypsy	LTR	90	tiny	134	medium	7927425	chromoarm	213	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	22736801	22737354	AT1TE74970	.	-	ATTIRX1B	.	DNA	553	short	44	low	7932831	chromoarm	292	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	22739626	22740387	AT1TE74975	.	-	HELITRONY1A	Helitron	RC	761	short	271	high	7935656	chromoarm	417	no-CHH	no-CHH	.	.	.	.	.
Chr1	22741012	22741396	AT1TE74980	.	+	ATDNA2T9C	MuDR	DNA	384	short	242	high	7937042	chromoarm	1803	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	22742895	22742979	AT1TE74985	.	-	ATTIRX1C	.	DNA	84	tiny	39	low	7938925	chromoarm	1227	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	22749282	22749626	AT1TE75000	.	+	BRODYAGA2	MuDR	DNA	344	short	525	high	7945312	chromoarm	229	no-CHH	no-CHH	.	.	.	.	.
Chr1	22749626	22749920	AT1TE75005	.	+	DT1	Mariner	DNA	294	short	123	medium	7945656	chromoarm	573	no-CHH	no-CHH	.	.	.	.	.
Chr1	22751638	22751805	AT1TE75010	.	+	ATLINE1_4	L1	LINE	167	short	102	medium	7947668	chromoarm	2197	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	22762013	22762699	AT1TE75040	.	-	ATREP5	Helitron	RC	686	short	624	high	7958043	chromoarm	4974	no-CHH	no-CHH	.	.	.	.	.
Chr1	22763337	22763834	AT1TE75045	.	+	ATDNA2T9C	MuDR	DNA	497	short	242	high	7959367	chromoarm	3839	no-CHH	no-CHH	.	.	.	.	.
Chr1	22766427	22767218	AT1TE75050	.	-	ATREP4	Helitron	RC	791	short	832	high	7962457	chromoarm	455	no-CHH	no-CHH	.	.	.	.	.
Chr1	22768458	22770022	AT1TE75055	.	-	ATREP10D	Helitron	RC	1564	short	1295	high	7964488	chromoarm	109	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	22775860	22776617	AT1TE75065	.	+	TAG3N1	HAT	DNA	757	short	97	medium	7971890	chromoarm	1173	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	22776617	22776914	AT1TE75070	.	+	ATREP10D	Helitron	RC	297	short	1295	high	7972647	chromoarm	1930	no-CHH	no-CHH	.	.	.	.	.
Chr1	22777307	22777670	AT1TE75075	.	-	ATDNA12T3_2	.	DNA	364	short	660	high	7973336	chromoarm	2619	.	.	.	.	.	.	.
Chr1	22777712	22777741	AT1TE75080	.	+	BRODYAGA1A	MuDR	DNA	29	tiny	586	high	7973742	chromoarm	3025	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	22777741	22778187	AT1TE75085	.	-	BRODYAGA1A	MuDR	DNA	446	short	586	high	7973771	chromoarm	2605	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	22778333	22779072	AT1TE75090	.	+	TAG3N1	HAT	DNA	739	short	97	medium	7974363	chromoarm	1720	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	22779072	22779119	AT1TE75095	.	+	TAG3N1	HAT	DNA	47	tiny	97	medium	7975102	chromoarm	1673	no-CHH	no-CHH	.	.	.	.	.
Chr1	22779119	22779456	AT1TE75100	.	+	TNAT1A	.	DNA	337	short	162	medium	7975149	chromoarm	1336	no-CHH	no-CHH	.	.	.	.	.
Chr1	22779550	22779758	AT1TE75105	.	+	ARNOLDY1	MuDR	DNA	208	short	237	high	7975580	chromoarm	1034	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	22781383	22782326	AT1TE75110	.	-	ATREP15	Helitron	RC	943	short	1003	high	7977413	chromoarm	30	no-CHH	no-CHH	.	.	.	.	.
Chr1	22782326	22782417	AT1TE75115	.	+	ATREP3	Helitron	RC	91	tiny	1439	high	7978356	chromoarm	407	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	22801429	22801662	AT1TE75170	.	+	BRODYAGA1A	MuDR	DNA	233	short	586	high	7997459	chromoarm	409	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	22804809	22805468	AT1TE75180	.	+	ATREP5	Helitron	RC	659	short	624	high	8000839	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	22806509	22807031	AT1TE75185	.	+	BRODYAGA2	MuDR	DNA	522	short	525	high	8002539	chromoarm	191	no-CHH	no-CHH	.	.	.	.	.
Chr1	22809604	22810172	AT1TE75190	.	+	HELITRONY1C	Helitron	RC	568	short	120	medium	8005634	chromoarm	47	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	22816707	22816893	AT1TE75210	.	-	ATHILA7	Gypsy	LTR	186	short	134	medium	8012737	chromoarm	1277	no-CHH	no-CHH	.	.	.	.	.
Chr1	22818099	22818880	AT1TE75215	.	+	ATREP15	Helitron	RC	781	short	1003	high	8014129	chromoarm	1062	no-CHH	no-CHH	.	.	.	.	.
Chr1	22828395	22828602	AT1TE75240	.	-	ATREP3	Helitron	RC	207	short	1439	high	8024425	chromoarm	1432	no-CHH	no-CHH	.	.	.	.	.
Chr1	22828602	22829372	AT1TE75245	.	+	ATREP13	Helitron	RC	770	short	106	medium	8024632	chromoarm	662	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	22829372	22829400	AT1TE75250	.	+	HELITRON2	Helitron	RC	28	tiny	194	medium	8025402	chromoarm	634	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	22832847	22833502	AT1TE75260	.	+	ATREP11	Helitron	RC	655	short	841	high	8028877	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	22838983	22839285	AT1TE75270	.	+	BRODYAGA1A	MuDR	DNA	302	short	586	high	8035013	chromoarm	539	no-CHH	no-CHH	.	.	.	.	.
Chr1	22839285	22839564	AT1TE75275	.	+	HELITRONY1D	Helitron	RC	279	short	756	high	8035315	chromoarm	841	no-CHH	no-CHH	.	.	.	.	.
Chr1	22844124	22844697	AT1TE75285	.	+	ATREP10D	Helitron	RC	573	short	1295	high	8040154	chromoarm	2691	no-CHH	no-CHH	.	.	.	.	.
Chr1	22844697	22845235	AT1TE75290	.	-	TNAT2A	.	DNA	538	short	38	low	8040727	chromoarm	2153	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	22845235	22845385	AT1TE75295	.	-	HELITRONY3	Helitron	RC	150	short	1399	high	8041265	chromoarm	2003	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	22845385	22846335	AT1TE75300	.	+	ATREP10B	Helitron	RC	950	short	491	high	8041415	chromoarm	1053	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	22846335	22854554	AT1TE75305	.	+	HELITRONY1A	Helitron	RC	8219	long	271	high	8042365	chromoarm	0	PolIV-RdDM	no-CHH	ExpressedAndAnnotated	22851970	22852515	+	transcript_id-"cf098429-b48d-4502-8dbe-8bf87f14a55b|7"
Chr1	22849915	22850044	AT1TE75310	.	+	ATENSPM10	En-Spm	DNA	129	short	81	medium	8045945	chromoarm	82	no-CHH	no-CHH	.	.	.	.	.
Chr1	22850148	22850188	AT1TE75315	.	+	HELITRONY1D	Helitron	RC	40	tiny	756	high	8046178	chromoarm	315	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	22850189	22850341	AT1TE75320	.	+	ATLINE1_6	L1	LINE	152	short	129	medium	8046219	chromoarm	356	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	22850607	22850629	AT1TE75325	.	+	ATREP10A	Helitron	RC	22	tiny	279	high	8046637	chromoarm	774	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	22850635	22851679	AT1TE75330	.	+	ATREP5	Helitron	RC	1044	short	624	high	8046665	chromoarm	802	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	22851679	22851906	AT1TE75335	.	+	ATREP3	Helitron	RC	227	short	1439	high	8047709	chromoarm	1846	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	22852921	22852952	AT1TE75340	.	+	HELITRONY1D	Helitron	RC	31	tiny	756	high	8048951	chromoarm	3088	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	22854554	22854617	AT1TE75345	.	-	ATCOPIA28	Copia	LTR	63	tiny	81	medium	8050584	chromoarm	1699	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	22855427	22855824	AT1TE75350	.	-	ATLINE2	L1	LINE	397	short	138	medium	8051457	chromoarm	492	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	22871444	22872210	AT1TE75400	.	+	ATREP10D	Helitron	RC	766	short	1295	high	8067474	chromoarm	281	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	22872210	22873790	AT1TE75405	.	+	ATDNA2T9A	MuDR	DNA	1580	short	48	low	8068240	chromoarm	1047	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	22876044	22876893	AT1TE75410	.	-	ATREP15	Helitron	RC	849	short	1003	high	8072074	chromoarm	4881	no-CHH	no-CHH	.	.	.	.	.
Chr1	22877801	22878576	AT1TE75415	.	+	BRODYAGA2	MuDR	DNA	775	short	525	high	8073831	chromoarm	3931	no-CHH	no-CHH	.	.	.	.	.
Chr1	22881471	22881603	AT1TE75420	.	+	DT1	Mariner	DNA	132	short	123	medium	8077501	chromoarm	904	no-CHH	no-CHH	.	.	.	.	.
Chr1	22888529	22888670	AT1TE75440	.	+	ATMU5	MuDR	DNA	141	short	24	low	8084559	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	22889077	22889452	AT1TE75445	.	-	ATN9_1	MuDR	DNA	375	short	65	medium	8085107	chromoarm	309	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	22893850	22894513	AT1TE75455	.	-	HELITRONY1E	Helitron	RC	663	short	447	high	8089880	chromoarm	21	no-CHH	no-CHH	.	.	.	.	.
Chr1	22894513	22894570	AT1TE75460	.	-	ATREP9	Helitron	RC	57	tiny	201	high	8090543	chromoarm	684	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	22918866	22919551	AT1TE75540	.	+	ATREP10B	Helitron	RC	685	short	491	high	8114896	chromoarm	262	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	22931683	22932520	AT1TE75580	.	-	HELITRON1	Helitron	RC	837	short	130	medium	8127713	chromoarm	261	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	22944586	22945241	AT1TE75620	.	-	ATCOPIA13	Copia	LTR	655	short	35	low	8140616	chromoarm	589	no-CHH	no-CHH	.	.	.	.	.
Chr1	22953880	22954021	AT1TE75650	.	+	RathE1_cons	.	RathE1_cons	141	short	213	high	8149910	chromoarm	3738	no-CHH	no-CHH	.	.	.	.	.
Chr1	22990840	22991677	AT1TE75770	.	-	ATLINE1_1	L1	LINE	837	short	61	medium	8186870	chromoarm	559	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	22991677	22991839	AT1TE75775	.	-	ATREP3	Helitron	RC	162	short	1439	high	8187707	chromoarm	1396	no-CHH	no-CHH	.	.	.	.	.
Chr1	22991839	22994059	AT1TE75780	.	-	ATREP3	Helitron	RC	2220	medium	1439	high	8187869	chromoarm	580	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	22994059	22994517	AT1TE75785	.	+	ATREP3	Helitron	RC	458	short	1439	high	8190089	chromoarm	122	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	22994904	22995307	AT1TE75790	.	+	ATGP1	Gypsy	LTR	403	short	144	medium	8190934	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	23019653	23019722	AT1TE75870	.	+	ATREP10D	Helitron	RC	69	tiny	1295	high	8215683	chromoarm	498	no-CHH	no-CHH	.	.	.	.	.
Chr1	23019722	23020224	AT1TE75875	.	-	ATREP10A	Helitron	RC	502	short	279	high	8215752	chromoarm	290	no-CHH	no-CHH	.	.	.	.	.
Chr1	23031590	23031816	AT1TE75910	.	+	ATLINE1A	L1	LINE	226	short	289	high	8227620	chromoarm	2401	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	23031348	23032268	+	transcript_id-"f2370dd0-7c26-49fb-aa2b-7aec66792cfc|3"
Chr1	23063824	23065453	AT1TE76020	.	-	ATREP3	Helitron	RC	1629	short	1439	high	8259854	chromoarm	2102	no-CHH	no-CHH	.	.	.	.	.
Chr1	23065453	23065566	AT1TE76025	.	+	ATREP4	Helitron	RC	113	short	832	high	8261483	chromoarm	3731	no-CHH	no-CHH	.	.	.	.	.
Chr1	23065566	23065702	AT1TE76030	.	+	ATREP11	Helitron	RC	136	short	841	high	8261596	chromoarm	3844	no-CHH	no-CHH	.	.	.	.	.
Chr1	23065702	23065848	AT1TE76035	.	+	ATREP10D	Helitron	RC	146	short	1295	high	8261732	chromoarm	3980	no-CHH	no-CHH	.	.	.	.	.
Chr1	23069554	23069670	AT1TE76045	.	-	ATLINE1A	L1	LINE	116	short	289	high	8265584	chromoarm	2904	no-CHH	no-CHH	.	.	.	.	.
Chr1	23070118	23070586	AT1TE76050	.	-	ATREP10D	Helitron	RC	468	short	1295	high	8266148	chromoarm	1988	no-CHH	no-CHH	.	.	.	.	.
Chr1	23070586	23070668	AT1TE76055	.	+	BRODYAGA1A	MuDR	DNA	82	tiny	586	high	8266616	chromoarm	1906	no-CHH	no-CHH	.	.	.	.	.
Chr1	23077907	23078953	AT1TE76070	.	+	ATREP4	Helitron	RC	1046	short	832	high	8273937	chromoarm	3386	no-CHH	no-CHH	.	.	.	.	.
Chr1	23087964	23088297	AT1TE76100	.	-	ATLINE1_3A	L1	LINE	333	short	160	medium	8283994	chromoarm	1077	no-CHH	no-CHH	.	.	.	.	.
Chr1	23093712	23094066	AT1TE76110	.	-	ATLINE2	L1	LINE	354	short	138	medium	8289742	chromoarm	0	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	23094707	23095031	AT1TE76115	.	-	HELITRONY2	Helitron	RC	324	short	198	medium	8290737	chromoarm	838	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	23095643	23095914	AT1TE76120	.	-	ATREP15	Helitron	RC	271	short	1003	high	8291673	chromoarm	1774	no-CHH	no-CHH	.	.	.	.	.
Chr1	23095914	23096072	AT1TE76125	.	+	ATREP19	.	DNA	158	short	189	medium	8291944	chromoarm	2045	no-CHH	no-CHH	.	.	.	.	.
Chr1	23096072	23097785	AT1TE76130	.	-	HELITRONY3	Helitron	RC	1713	short	1399	high	8292102	chromoarm	1698	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	23097785	23097816	AT1TE76135	.	+	ATREP19	.	DNA	31	tiny	189	medium	8293815	chromoarm	1667	no-CHH	no-CHH	.	.	.	.	.
Chr1	23097816	23097882	AT1TE76140	.	+	HELITRONY3	Helitron	RC	66	tiny	1399	high	8293846	chromoarm	1601	no-CHH	no-CHH	.	.	.	.	.
Chr1	23114964	23115146	AT1TE76200	.	+	VANDAL1	MuDR	DNA	182	short	80	medium	8310994	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	23118212	23118239	AT1TE76210	.	+	ATCOPIA86	Copia	LTR	27	tiny	7	low	8314242	chromoarm	842	no-RdDM	no-CHH	.	.	.	.	.
Chr1	23118239	23123214	AT1TE76215	.	+	ATCOPIA51	Copia	LTR	4975	medium	14	low	8314269	chromoarm	869	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	23118565	23120279	+	transcript_id-"8dc36cf3-a32b-41ce-a85a-4efda2356bb0|17"
Chr1	23123842	23124043	AT1TE76220	.	-	ATTIRTA1	Tc1	DNA	201	short	95	medium	8319872	chromoarm	4755	no-CHH	no-CHH	.	.	.	.	.
Chr1	23124770	23124812	AT1TE76225	.	-	BRODYAGA2	MuDR	DNA	42	tiny	525	high	8320800	chromoarm	3986	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	23124812	23125125	AT1TE76230	.	-	ATREP3	Helitron	RC	313	short	1439	high	8320842	chromoarm	3673	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	23125125	23125808	AT1TE76235	.	-	ATREP2	Helitron	RC	683	short	164	medium	8321155	chromoarm	2990	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	23126010	23126528	AT1TE76240	.	+	ARNOLD2	MuDR	DNA	518	short	68	medium	8322040	chromoarm	2270	no-CHH	no-CHH	.	.	.	.	.
Chr1	23127792	23128419	AT1TE76245	.	+	HELITRONY3	Helitron	RC	627	short	1399	high	8323822	chromoarm	379	no-CHH	no-CHH	.	.	.	.	.
Chr1	23139967	23140187	AT1TE76280	.	-	ATCOPIA75	Copia	LTR	220	short	20	low	8335997	chromoarm	2886	no-CHH	no-CHH	.	.	.	.	.
Chr1	23141284	23141922	AT1TE76285	.	+	VANDAL17	MuDR	DNA	638	short	178	medium	8337314	chromoarm	2583	no-CHH	no-CHH	.	.	.	.	.
Chr1	23143345	23143481	AT1TE76290	.	+	ATCOPIA85	Copia	LTR	136	short	7	low	8339375	chromoarm	1024	no-CHH	no-CHH	.	.	.	.	.
Chr1	23149768	23149995	AT1TE76310	.	+	ATMUNX1	MuDR	DNA	227	short	155	medium	8345798	chromoarm	1874	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	23150413	23151065	AT1TE76315	.	+	ARNOLD3	MuDR	DNA	652	short	45	low	8346443	chromoarm	804	no-CHH	no-CHH	.	.	.	.	.
Chr1	23151231	23151456	AT1TE76320	.	-	ATCOPIA85	Copia	LTR	225	short	7	low	8347261	chromoarm	413	no-CHH	no-CHH	.	.	.	.	.
Chr1	23152827	23153329	AT1TE76325	.	-	ATN9_1	MuDR	DNA	502	short	65	medium	8348857	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	23156936	23157393	AT1TE76335	.	+	ATLINEIII	L1	LINE	457	short	196	medium	8352966	chromoarm	1509	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	23160753	23160977	AT1TE76345	.	+	ATLINE1_3A	L1	LINE	224	short	160	medium	8356783	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	23161950	23162318	AT1TE76350	.	-	ATREP5	Helitron	RC	368	short	624	high	8357980	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	23165463	23165908	AT1TE76360	.	+	HELITRONY1D	Helitron	RC	445	short	756	high	8361493	chromoarm	2912	no-CHH	no-CHH	.	.	.	.	.
Chr1	23173886	23173922	AT1TE76390	.	-	ATREP10D	Helitron	RC	36	tiny	1295	high	8369916	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	23173922	23174556	AT1TE76395	.	+	ATREP3	Helitron	RC	634	short	1439	high	8369952	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	23174563	23174794	AT1TE76400	.	+	ATREP10A	Helitron	RC	231	short	279	high	8370593	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	23174794	23175117	AT1TE76405	.	-	ATHATN7	HAT	DNA	323	short	71	medium	8370824	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	23175117	23175511	AT1TE76410	.	+	BRODYAGA2	MuDR	DNA	394	short	525	high	8371147	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	23191461	23192231	AT1TE76460	.	+	ATREP11A	Helitron	RC	770	short	95	medium	8387491	chromoarm	270	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	23197418	23197681	AT1TE76470	.	-	DT1	Mariner	DNA	263	short	123	medium	8393448	chromoarm	2267	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	23198866	23199515	AT1TE76475	.	-	HELITRONY1D	Helitron	RC	649	short	756	high	8394896	chromoarm	433	no-CHH	no-CHH	.	.	.	.	.
Chr1	23199515	23199709	AT1TE76480	.	-	ATREP5	Helitron	RC	194	short	624	high	8395545	chromoarm	239	no-CHH	no-CHH	.	.	.	.	.
Chr1	23207954	23208021	AT1TE76510	.	-	ATCOPIA24	Copia	LTR	67	tiny	27	low	8403984	chromoarm	225	no-CHH	no-CHH	.	.	.	.	.
Chr1	23211863	23212737	AT1TE76520	.	+	ATLINE1_1	L1	LINE	874	short	61	medium	8407893	chromoarm	752	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	23213555	23213592	AT1TE76525	.	+	ATREP3	Helitron	RC	37	tiny	1439	high	8409585	chromoarm	2444	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	23213592	23215627	AT1TE76530	.	+	ATREP3	Helitron	RC	2035	medium	1439	high	8409622	chromoarm	590	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	23215627	23215724	AT1TE76535	.	+	HELITRONY1B	Helitron	RC	97	tiny	414	high	8411657	chromoarm	493	no-CHH	no-CHH	.	.	.	.	.
Chr1	23215724	23216089	AT1TE76540	.	+	BRODYAGA1A	MuDR	DNA	365	short	586	high	8411754	chromoarm	128	no-CHH	no-RdDM	.	.	.	.	.
Chr1	23220114	23220379	AT1TE76550	.	-	ATTIRTA1	Tc1	DNA	265	short	95	medium	8416144	chromoarm	2198	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	23238084	23238484	AT1TE76610	.	+	ATMU8	MuDR	DNA	400	short	9	low	8434114	chromoarm	0	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	23238882	23239934	AT1TE76615	.	+	ATREP10D	Helitron	RC	1052	short	1295	high	8434912	chromoarm	370	no-CHH	no-CHH	.	.	.	.	.
Chr1	23240231	23242673	AT1TE76620	.	-	TAG2	HAT	DNA	2442	medium	86	medium	8436261	chromoarm	1719	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	23247298	23247895	AT1TE76630	.	+	HELITRONY1E	Helitron	RC	597	short	447	high	8443328	chromoarm	462	no-CHH	no-CHH	.	.	.	.	.
Chr1	23251648	23252064	AT1TE76640	.	-	ATREP5	Helitron	RC	416	short	624	high	8447678	chromoarm	304	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	23278020	23279166	AT1TE76730	.	-	ATREP10D	Helitron	RC	1146	short	1295	high	8474050	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	23281602	23282774	AT1TE76735	.	-	HELITRONY1E	Helitron	RC	1172	short	447	high	8477632	chromoarm	1445	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	23286756	23286862	AT1TE76745	.	+	ATDNAI27T9C	MuDR	DNA	106	short	108	medium	8482786	chromoarm	248	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	23287660	23288347	AT1TE76750	.	+	BRODYAGA2	MuDR	DNA	687	short	525	high	8483690	chromoarm	1152	no-CHH	no-CHH	.	.	.	.	.
Chr1	23288347	23288378	AT1TE76755	.	+	ATREP4	Helitron	RC	31	tiny	832	high	8484377	chromoarm	1839	no-CHH	no-CHH	.	.	.	.	.
Chr1	23294981	23295036	AT1TE76770	.	+	ATLINEIII	L1	LINE	55	tiny	196	medium	8491011	chromoarm	271	no-CHH	no-CHH	.	.	.	.	.
Chr1	23295036	23295536	AT1TE76775	.	+	ATLINE2	L1	LINE	500	short	138	medium	8491066	chromoarm	326	no-CHH	no-CHH	.	.	.	.	.
Chr1	23295655	23296870	AT1TE76780	.	-	LIMPET1	MuDR	DNA	1215	short	116	medium	8491685	chromoarm	921	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	23297075	23297257	AT1TE76785	.	-	ATDNAI27T9B	MuDR	DNA	182	short	43	low	8493105	chromoarm	534	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	23312998	23313154	AT1TE76830	.	-	ATCOPIA13	Copia	LTR	156	short	35	low	8509028	chromoarm	251	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	23314365	23314558	AT1TE76835	.	-	ATCOPIA11	Copia	LTR	193	short	26	low	8510395	chromoarm	735	no-CHH	no-CHH	.	.	.	.	.
Chr1	23321141	23322080	AT1TE76850	.	-	ATREP10D	Helitron	RC	939	short	1295	high	8517171	chromoarm	912	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	23327346	23328211	AT1TE76860	.	+	ATREP4	Helitron	RC	865	short	832	high	8523376	chromoarm	689	no-CHH	no-CHH	.	.	.	.	.
Chr1	23341854	23341879	AT1TE76900	.	+	ATREP19	.	DNA	25	tiny	189	medium	8537884	chromoarm	630	RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	23341879	23342295	AT1TE76905	.	-	ATN9_1	MuDR	DNA	416	short	65	medium	8537909	chromoarm	214	no-CHH	no-CHH	.	.	.	.	.
Chr1	23342295	23342334	AT1TE76910	.	+	ATREP19	.	DNA	39	tiny	189	medium	8538325	chromoarm	175	no-CHH	no-CHH	.	.	.	.	.
Chr1	23346992	23347545	AT1TE76920	.	-	ATREP5	Helitron	RC	553	short	624	high	8543022	chromoarm	426	no-CHH	no-CHH	.	.	.	.	.
Chr1	23362722	23364064	AT1TE76970	.	-	ATREP15	Helitron	RC	1342	short	1003	high	8558752	chromoarm	1596	no-CHH	no-CHH	.	.	.	.	.
Chr1	23364064	23364145	AT1TE76975	.	-	ATREP4	Helitron	RC	81	tiny	832	high	8560094	chromoarm	2938	no-CHH	no-CHH	.	.	.	.	.
Chr1	23368847	23369258	AT1TE76985	.	-	ATREP19	.	DNA	411	short	189	medium	8564877	chromoarm	699	no-CHH	no-CHH	.	.	.	.	.
Chr1	23378393	23380869	AT1TE77010	.	-	ATMUN1	MuDR	DNA	2476	medium	107	medium	8574423	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	23379143	23379689	AT1TE77015	.	+	HELITRONY3A	Helitron	RC	546	short	49	low	8575173	chromoarm	49	no-CHH	no-CHH	.	.	.	.	.
Chr1	23380869	23381035	AT1TE77020	.	-	ATHILA7	Gypsy	LTR	166	short	134	medium	8576899	chromoarm	424	no-CHH	no-CHH	.	.	.	.	.
Chr1	23381619	23382240	AT1TE77025	.	+	ATREP9	Helitron	RC	621	short	201	high	8577649	chromoarm	1	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	23392873	23393067	AT1TE77050	.	+	ATREP4	Helitron	RC	194	short	832	high	8588903	chromoarm	264	no-CHH	no-CHH	.	.	.	.	.
Chr1	23393067	23394635	AT1TE77055	.	+	ATREP15	Helitron	RC	1568	short	1003	high	8589097	chromoarm	458	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	23395718	23396266	AT1TE77060	.	-	HELITRON4	Helitron	RC	548	short	199	medium	8591748	chromoarm	3109	no-CHH	no-CHH	.	.	.	.	.
Chr1	23398303	23398483	AT1TE77065	.	+	ATLINE2	L1	LINE	180	short	138	medium	8594333	chromoarm	907	no-CHH	no-CHH	.	.	.	.	.
Chr1	23404389	23404483	AT1TE77075	.	-	ATDNAI27T9A	MuDR	DNA	94	tiny	116	medium	8600419	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	23410920	23411217	AT1TE77090	.	-	ATREP7	Helitron	RC	297	short	164	medium	8606950	chromoarm	195	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	23411217	23411783	AT1TE77095	.	+	ATREP11	Helitron	RC	566	short	841	high	8607247	chromoarm	492	no-CHH	no-CHH	.	.	.	.	.
Chr1	23423995	23424034	AT1TE77130	.	-	ATREP10D	Helitron	RC	39	tiny	1295	high	8620025	chromoarm	224	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	23424034	23425021	AT1TE77135	.	-	ATMUN1	MuDR	DNA	987	short	107	medium	8620064	chromoarm	263	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	23425031	23425363	AT1TE77140	.	+	ATREP11	Helitron	RC	332	short	841	high	8621061	chromoarm	210	no-CHH	no-CHH	.	.	.	.	.
Chr1	23430954	23431563	AT1TE77150	.	-	ARNOLDY2	MuDR	DNA	609	short	288	high	8626984	chromoarm	271	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	23431563	23431669	AT1TE77155	.	+	ATREP19	.	DNA	106	short	189	medium	8627593	chromoarm	165	no-CHH	no-CHH	.	.	.	.	.
Chr1	23435100	23435292	AT1TE77165	.	-	ATHAT1	HAT	DNA	192	short	105	medium	8631130	chromoarm	500	no-RdDM	no-RdDM	ExpressedAndAnnotated	23435776	23435020	-	transcript_id-"4ab9dd78-d160-4e05-b298-c3cec4e3bc63|3"
Chr1	23447917	23448072	AT1TE77200	.	-	HELITRONY1C	Helitron	RC	155	short	120	medium	8643947	chromoarm	563	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	23448072	23448817	AT1TE77205	.	+	ATREP10B	Helitron	RC	745	short	491	high	8644102	chromoarm	199	no-CHH	no-CHH	.	.	.	.	.
Chr1	23454907	23454928	AT1TE77220	.	+	BRODYAGA2	MuDR	DNA	21	tiny	525	high	8650937	chromoarm	1259	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	23454928	23454949	AT1TE77225	.	-	ATHPOGON3	Pogo	DNA	21	tiny	118	medium	8650958	chromoarm	1238	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	23454949	23455733	AT1TE77230	.	+	ATREP3	Helitron	RC	784	short	1439	high	8650979	chromoarm	454	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	23509590	23509833	AT1TE77410	.	+	ATMU2	MuDR	DNA	243	short	64	medium	8705620	chromoarm	241	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	23510460	23510643	AT1TE77415	.	-	ATMU2	MuDR	DNA	183	short	64	medium	8706490	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	23518779	23519503	AT1TE77440	.	+	ATREP3	Helitron	RC	724	short	1439	high	8714809	chromoarm	2	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	23521056	23521634	AT1TE77445	.	-	ATREP10D	Helitron	RC	578	short	1295	high	8717086	chromoarm	1261	no-CHH	no-CHH	.	.	.	.	.
Chr1	23521841	23521862	AT1TE77450	.	+	ATREP4	Helitron	RC	21	tiny	832	high	8717871	chromoarm	1033	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	23521862	23522478	AT1TE77455	.	+	BRODYAGA2	MuDR	DNA	616	short	525	high	8717892	chromoarm	417	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	23537770	23538278	AT1TE77500	.	-	ATDNAI26T9	MuDR	DNA	508	short	25	low	8733800	chromoarm	0	no-CHH	no-CHH	ExpressedAndAnnotated	23539251	23536545	-	transcript_id-"b26ac0b3-14ee-453e-a5bd-a242ac56ad21|27"
Chr1	23537847	23537992	AT1TE77505	.	-	ATDNAI26T9	MuDR	DNA	145	short	25	low	8733877	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	23540753	23541144	AT1TE77510	.	-	ATDNAI26T9	MuDR	DNA	391	short	25	low	8736783	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	23542113	23542303	AT1TE77515	.	+	ATDNAI27T9C	MuDR	DNA	190	short	108	medium	8738143	chromoarm	428	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	23542303	23543421	AT1TE77520	.	+	ATREP10D	Helitron	RC	1118	short	1295	high	8738333	chromoarm	618	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	23553518	23553559	AT1TE77550	.	-	HELITRONY1A	Helitron	RC	41	tiny	271	high	8749548	chromoarm	1572	RDR6-RdDM	DCL3-RdDM	.	.	.	.	.
Chr1	23553559	23553588	AT1TE77555	.	-	ATREP3	Helitron	RC	29	tiny	1439	high	8749589	chromoarm	1613	no-CHH	no-CHH	.	.	.	.	.
Chr1	23553588	23554635	AT1TE77560	.	-	ATREP3	Helitron	RC	1047	short	1439	high	8749618	chromoarm	1379	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	23554635	23554786	AT1TE77565	.	-	ATREP15	Helitron	RC	151	short	1003	high	8750665	chromoarm	1228	no-CHH	no-CHH	.	.	.	.	.
Chr1	23566325	23566585	AT1TE77600	.	-	RP1_AT	.	DNA	261	short	87	medium	8762354	chromoarm	97	.	.	.	.	.	.	.
Chr1	23574833	23575066	AT1TE77630	.	+	ATCOPIA94	Copia	LTR	233	short	39	low	8770863	chromoarm	383	no-CHH	no-CHH	.	.	.	.	.
Chr1	23586308	23586363	AT1TE77670	.	+	VANDALNX2	MuDR	DNA	55	tiny	37	low	8782338	chromoarm	709	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	23598892	23599297	AT1TE77710	.	+	ATREP19	.	DNA	405	short	189	medium	8794922	chromoarm	511	no-CHH	no-CHH	.	.	.	.	.
Chr1	23613635	23614326	AT1TE77760	.	-	ATHPOGON3	Pogo	DNA	691	short	118	medium	8809665	chromoarm	134	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	23614326	23614368	AT1TE77765	.	-	ATREP5	Helitron	RC	42	tiny	624	high	8810356	chromoarm	92	no-CHH	no-CHH	.	.	.	.	.
Chr1	23622341	23623180	AT1TE77790	.	-	ATREP10D	Helitron	RC	839	short	1295	high	8818371	chromoarm	259	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	23623521	23623671	AT1TE77795	.	+	ATLINE2	L1	LINE	150	short	138	medium	8819551	chromoarm	1439	no-CHH	no-CHH	.	.	.	.	.
Chr1	23623983	23624608	AT1TE77800	.	+	ATLINEIII	L1	LINE	625	short	196	medium	8820013	chromoarm	599	no-CHH	no-CHH	.	.	.	.	.
Chr1	23629970	23630083	AT1TE77810	.	+	ATCOPIA59	Copia	LTR	113	short	20	low	8826000	chromoarm	939	no-CHH	no-CHH	.	.	.	.	.
Chr1	23651610	23652016	AT1TE77880	.	-	ATTIRX1C	.	DNA	406	short	39	low	8847640	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	23669115	23669184	AT1TE77940	.	-	ATCOPIA24	Copia	LTR	69	tiny	27	low	8865145	chromoarm	112	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	23689043	23689427	AT1TE78010	.	-	ATCOPIA4	Copia	LTR	384	short	11	low	8885073	chromoarm	563	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	23694927	23695598	AT1TE78020	.	-	ATREP15	Helitron	RC	671	short	1003	high	8890957	chromoarm	1363	no-CHH	no-CHH	.	.	.	.	.
Chr1	23710108	23711252	AT1TE78070	.	+	HELITRONY3	Helitron	RC	1144	short	1399	high	8906138	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	23711252	23711402	AT1TE78075	.	+	VANDAL22	MuDR	DNA	150	short	48	low	8907282	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	23723923	23724092	AT1TE78110	.	+	HELITRONY3A	Helitron	RC	169	short	49	low	8919953	chromoarm	2298	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	23725656	23726536	AT1TE78115	.	-	ATREP15	Helitron	RC	880	short	1003	high	8921686	chromoarm	1390	no-CHH	no-CHH	.	.	.	.	.
Chr1	23742383	23742487	AT1TE78160	.	+	ATHAT1	HAT	DNA	104	short	105	medium	8938413	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	23745529	23745978	AT1TE78170	.	-	ATREP3	Helitron	RC	449	short	1439	high	8941559	chromoarm	178	no-CHH	no-CHH	.	.	.	.	.
Chr1	23749098	23749264	AT1TE78180	.	+	RathE1_cons	.	RathE1_cons	166	short	213	high	8945128	chromoarm	215	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	23754398	23754445	AT1TE78190	.	-	ATREP3	Helitron	RC	47	tiny	1439	high	8950428	chromoarm	50	no-CHH	no-CHH	.	.	.	.	.
Chr1	23754445	23755437	AT1TE78195	.	+	ATREP11	Helitron	RC	992	short	841	high	8950475	chromoarm	97	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	23756839	23756961	AT1TE78200	.	+	BRODYAGA2	MuDR	DNA	122	short	525	high	8952869	chromoarm	1664	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	23756961	23757009	AT1TE78205	.	-	HELITRON4	Helitron	RC	48	tiny	199	medium	8952991	chromoarm	1616	no-CHH	no-CHH	.	.	.	.	.
Chr1	23757009	23757427	AT1TE78210	.	-	ATREP10A	Helitron	RC	418	short	279	high	8953039	chromoarm	1198	no-CHH	no-CHH	.	.	.	.	.
Chr1	23757427	23757459	AT1TE78215	.	+	ATREP10D	Helitron	RC	32	tiny	1295	high	8953457	chromoarm	1166	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	23761091	23761522	AT1TE78225	.	+	ATREP4	Helitron	RC	431	short	832	high	8957121	chromoarm	817	no-CHH	no-CHH	.	.	.	.	.
Chr1	23761522	23761830	AT1TE78230	.	-	ATSINE2A	.	SINE	308	short	33	low	8957552	chromoarm	753	no-RdDM	no-CHH	.	.	.	.	.
Chr1	23769323	23769999	AT1TE78250	.	+	ATREP10D	Helitron	RC	676	short	1295	high	8965353	chromoarm	266	no-CHH	no-CHH	.	.	.	.	.
Chr1	23819471	23819623	AT1TE78410	.	+	ATCOPIA11	Copia	LTR	152	short	26	low	9015501	chromoarm	1178	no-CHH	no-CHH	.	.	.	.	.
Chr1	23820355	23820462	AT1TE78415	.	-	ATTIRTA1	Tc1	DNA	107	short	95	medium	9016385	chromoarm	1177	no-CHH	no-CHH	.	.	.	.	.
Chr1	23837560	23839897	AT1TE78470	.	+	Unassigned	.	Unassigned	2337	medium	.	low	9033590	chromoarm	940	no-CHH	no-CHH	.	.	.	.	.
Chr1	23840887	23843251	AT1TE78475	.	+	Unassigned	.	Unassigned	2364	medium	.	low	9036917	chromoarm	4267	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	23850571	23852785	AT1TE78490	.	+	Unassigned	.	Unassigned	2214	medium	.	low	9046601	chromoarm	543	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	23855357	23855467	AT1TE78495	.	-	ATMUN2	MuDR	DNA	110	short	6	low	9051387	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	23855764	23856207	AT1TE78500	.	+	ATREP4	Helitron	RC	443	short	832	high	9051794	chromoarm	357	no-CHH	no-CHH	.	.	.	.	.
Chr1	23856453	23857302	AT1TE78505	.	+	HELITRONY1B	Helitron	RC	849	short	414	high	9052483	chromoarm	91	PolIV-and-RDR6-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	23861853	23862339	AT1TE78515	.	-	ATLINE1_4	L1	LINE	486	short	102	medium	9057883	chromoarm	1203	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	23873625	23873883	AT1TE78550	.	-	ATENSPM6	En-Spm	DNA	258	short	151	medium	9069655	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	23875269	23875670	AT1TE78555	.	-	ATTIRX1C	.	DNA	401	short	39	low	9071299	chromoarm	1299	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	23875670	23877284	AT1TE78560	.	+	ATREP3	Helitron	RC	1614	short	1439	high	9071700	chromoarm	840	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	23877284	23877421	AT1TE78565	.	+	ATREP3	Helitron	RC	137	short	1439	high	9073314	chromoarm	703	no-CHH	no-CHH	.	.	.	.	.
Chr1	23877421	23877635	AT1TE78570	.	+	ATREP2A	Helitron	RC	214	short	116	medium	9073451	chromoarm	489	no-CHH	no-CHH	.	.	.	.	.
Chr1	23879051	23880537	AT1TE78575	.	-	ATREP11	Helitron	RC	1486	short	841	high	9075081	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	23880537	23880587	AT1TE78580	.	+	ATREP9	Helitron	RC	50	tiny	201	high	9076567	chromoarm	0	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	23880922	23881413	AT1TE78585	.	-	HELITRONY1B	Helitron	RC	491	short	414	high	9076952	chromoarm	168	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	23885396	23885978	AT1TE78595	.	+	ATREP3	Helitron	RC	582	short	1439	high	9081426	chromoarm	173	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	23896045	23896641	AT1TE78620	.	-	ATREP4	Helitron	RC	596	short	832	high	9092075	chromoarm	3667	no-CHH	no-CHH	.	.	.	.	.
Chr1	23896641	23896666	AT1TE78625	.	+	ATREP15	Helitron	RC	25	tiny	1003	high	9092671	chromoarm	3642	no-CHH	no-CHH	.	.	.	.	.
Chr1	23897445	23897897	AT1TE78630	.	+	BRODYAGA2	MuDR	DNA	452	short	525	high	9093475	chromoarm	2411	no-CHH	no-CHH	.	.	.	.	.
Chr1	23918861	23918936	AT1TE78700	.	-	ATGP8	Gypsy	LTR	75	tiny	92	medium	9114891	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	23925008	23925094	AT1TE78710	.	+	ATDNA2T9C	MuDR	DNA	86	tiny	242	high	9121038	chromoarm	852	no-CHH	no-CHH	.	.	.	.	.
Chr1	23925094	23925649	AT1TE78715	.	-	HELITRON3	Helitron	RC	555	short	53	medium	9121124	chromoarm	938	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	23926446	23931762	AT1TE78720	.	-	HELITRON2	Helitron	RC	5316	long	194	medium	9122476	chromoarm	1778	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	23930397	23930504	AT1TE78725	.	-	HELITRON4	Helitron	RC	107	short	199	medium	9126427	chromoarm	3036	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	23930506	23930530	AT1TE78730	.	-	HELITRON5	Helitron	RC	24	tiny	56	medium	9126536	chromoarm	3010	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	23930530	23930576	AT1TE78735	.	-	HELITRON2	Helitron	RC	46	tiny	194	medium	9126560	chromoarm	2964	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	23932026	23932189	AT1TE78740	.	-	HELITRON2	Helitron	RC	163	short	194	medium	9128056	chromoarm	1351	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	23939760	23939917	AT1TE78760	.	-	ATREP11	Helitron	RC	157	short	841	high	9135790	chromoarm	195	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	23939917	23940948	AT1TE78765	.	-	SIMPLEGUY1	Harbinger	DNA	1031	short	116	medium	9135947	chromoarm	352	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	23947052	23947192	AT1TE78780	.	-	HELITRONY3A	Helitron	RC	140	short	49	low	9143082	chromoarm	835	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	24004568	24004622	AT1TE78970	.	-	BRODYAGA1A	MuDR	DNA	54	tiny	586	high	9200598	chromoarm	2665	no-CHH	no-CHH	.	.	.	.	.
Chr1	24004622	24005417	AT1TE78975	.	+	ATREP10B	Helitron	RC	795	short	491	high	9200652	chromoarm	1870	no-CHH	no-CHH	.	.	.	.	.
Chr1	24012369	24012519	AT1TE78990	.	-	ATSINE4	.	SINE	150	short	98	medium	9208399	chromoarm	3909	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	24014333	24014821	AT1TE78995	.	-	ATREP4	Helitron	RC	488	short	832	high	9210363	chromoarm	2056	no-CHH	no-CHH	.	.	.	.	.
Chr1	24027108	24027951	AT1TE79030	.	+	ATREP11	Helitron	RC	844	short	841	high	9223137	chromoarm	771	.	.	.	.	.	.	.
Chr1	24027951	24028114	AT1TE79035	.	+	ATREP11	Helitron	RC	163	short	841	high	9223981	chromoarm	862	no-CHH	no-CHH	.	.	.	.	.
Chr1	24035524	24035702	AT1TE79050	.	-	BRODYAGA1A	MuDR	DNA	178	short	586	high	9231554	chromoarm	368	no-CHH	no-CHH	.	.	.	.	.
Chr1	24038987	24039159	AT1TE79060	.	+	ATREP5	Helitron	RC	172	short	624	high	9235017	chromoarm	97	no-CHH	no-CHH	.	.	.	.	.
Chr1	24039166	24039912	AT1TE79065	.	-	ARNOLD4	MuDR	DNA	746	short	23	low	9235196	chromoarm	18	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	24041682	24041997	AT1TE79070	.	+	ATENSPM3	En-Spm	DNA	315	short	98	medium	9237712	chromoarm	1140	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	24042834	24043020	AT1TE79075	.	-	ATCOPIA24	Copia	LTR	186	short	27	low	9238864	chromoarm	1617	no-CHH	no-CHH	.	.	.	.	.
Chr1	24043967	24044318	AT1TE79080	.	+	ATREP3	Helitron	RC	351	short	1439	high	9239997	chromoarm	319	no-CHH	no-CHH	.	.	.	.	.
Chr1	24048881	24049860	AT1TE79090	.	+	HELITRONY3	Helitron	RC	979	short	1399	high	9244911	chromoarm	253	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	24049860	24049911	AT1TE79095	.	+	ATREP3	Helitron	RC	51	tiny	1439	high	9245890	chromoarm	202	no-CHH	RDR6-RdDM	.	.	.	.	.
Chr1	24059959	24060041	AT1TE79120	.	+	ATLINE1A	L1	LINE	82	tiny	289	high	9255989	chromoarm	554	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	24062736	24063302	AT1TE79125	.	+	HELITRONY3	Helitron	RC	566	short	1399	high	9258766	chromoarm	171	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	24063960	24064293	AT1TE79130	.	-	ATHATN4	HAT	DNA	333	short	56	medium	9259990	chromoarm	938	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	24086049	24086092	AT1TE79200	.	-	ATREP1	Helitron	RC	43	tiny	498	high	9282079	chromoarm	616	no-CHH	no-CHH	.	.	.	.	.
Chr1	24086092	24086569	AT1TE79205	.	+	ATREP9	Helitron	RC	477	short	201	high	9282122	chromoarm	240	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	24092605	24093471	AT1TE79215	.	+	ATREP3	Helitron	RC	866	short	1439	high	9288635	chromoarm	39	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	24093471	24093491	AT1TE79220	.	+	HELITRON2	Helitron	RC	20	tiny	194	medium	9289501	chromoarm	518	no-CHH	no-CHH	.	.	.	.	.
Chr1	24101340	24101456	AT1TE79250	.	-	ATDNA12T3_2	.	DNA	116	short	660	high	9297370	chromoarm	594	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	24101485	24101571	AT1TE79255	.	+	ATCOPIA93	Copia	LTR	86	tiny	10	low	9297515	chromoarm	739	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	24101610	24101633	AT1TE79260	.	-	ATREP10	Helitron	RC	23	tiny	63	medium	9297640	chromoarm	864	PolIV-RdDM	RDR6-RdDM	.	.	.	.	.
Chr1	24101633	24101682	AT1TE79265	.	-	ATREP4	Helitron	RC	49	tiny	832	high	9297663	chromoarm	887	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	24101682	24102799	AT1TE79270	.	+	ATREP1	Helitron	RC	1117	short	498	high	9297712	chromoarm	117	no-CHH	no-CHH	.	.	.	.	.
Chr1	24105930	24106230	AT1TE79280	.	-	ATENSPM6	En-Spm	DNA	300	short	151	medium	9301960	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	24111444	24111620	AT1TE79290	.	-	ATHILA7	Gypsy	LTR	176	short	134	medium	9307474	chromoarm	279	no-CHH	no-CHH	.	.	.	.	.
Chr1	24112223	24112881	AT1TE79295	.	-	ATREP15	Helitron	RC	658	short	1003	high	9308253	chromoarm	401	no-CHH	no-CHH	.	.	.	.	.
Chr1	24119128	24119434	AT1TE79310	.	-	ATCOPIA94	Copia	LTR	306	short	39	low	9315158	chromoarm	330	no-CHH	no-CHH	.	.	.	.	.
Chr1	24119436	24119699	AT1TE79315	.	-	ATREP4	Helitron	RC	263	short	832	high	9315466	chromoarm	638	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	24119699	24120486	AT1TE79320	.	-	ATREP3	Helitron	RC	787	short	1439	high	9315729	chromoarm	439	no-CHH	no-CHH	.	.	.	.	.
Chr1	24120486	24120533	AT1TE79325	.	-	ATREP4	Helitron	RC	47	tiny	832	high	9316516	chromoarm	392	no-CHH	no-CHH	.	.	.	.	.
Chr1	24125447	24125801	AT1TE79335	.	-	ATTIRX1A	.	DNA	354	short	63	medium	9321477	chromoarm	123	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	24125801	24125898	AT1TE79340	.	-	ARNOLDY1	MuDR	DNA	97	tiny	237	high	9321831	chromoarm	477	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	24126179	24127536	AT1TE79345	.	-	ATREP10A	Helitron	RC	1357	short	279	high	9322209	chromoarm	50	no-CHH	no-CHH	.	.	.	.	.
Chr1	24127536	24127588	AT1TE79350	.	+	HELITRONY1D	Helitron	RC	52	tiny	756	high	9323566	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	24171904	24172328	AT1TE79500	.	+	ATN9_1	MuDR	DNA	424	short	65	medium	9367934	chromoarm	447	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	24172330	24172382	AT1TE79505	.	+	ATDNA12T3_2	.	DNA	52	tiny	660	high	9368360	chromoarm	664	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	24188770	24189409	AT1TE79550	.	+	BRODYAGA2	MuDR	DNA	639	short	525	high	9384800	chromoarm	54	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	24189409	24189500	AT1TE79555	.	+	ATREP15	Helitron	RC	91	tiny	1003	high	9385439	chromoarm	0	no-CHH	no-CHH	ExpressedAndAnnotated	24189400	24189962	+	transcript_id-"df4e87a8-5e30-47c1-b7be-d9cd7def159c|5"
Chr1	24214994	24215152	AT1TE79630	.	+	TNAT1A	.	DNA	158	short	162	medium	9411024	chromoarm	875	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	24223222	24223479	AT1TE79660	.	-	ATHATN3A	HAT	DNA	257	short	20	low	9419252	chromoarm	433	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	24241062	24241693	AT1TE79720	.	+	ATLINE1A	L1	LINE	631	short	289	high	9437092	chromoarm	161	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	24252357	24252521	AT1TE79760	.	-	ATDNAI27T9C	MuDR	DNA	164	short	108	medium	9448387	chromoarm	303	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	24254123	24254371	AT1TE79765	.	+	HELITRONY1D	Helitron	RC	248	short	756	high	9450153	chromoarm	557	no-CHH	no-CHH	.	.	.	.	.
Chr1	24256521	24256935	AT1TE79770	.	+	BRODYAGA1A	MuDR	DNA	414	short	586	high	9452551	chromoarm	326	no-CHH	no-CHH	.	.	.	.	.
Chr1	24263647	24264885	AT1TE79790	.	-	ATREP11	Helitron	RC	1238	short	841	high	9459677	chromoarm	1003	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr1	24270493	24270672	AT1TE79800	.	+	ATLINE1_3A	L1	LINE	179	short	160	medium	9466523	chromoarm	603	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	24275019	24275588	AT1TE79810	.	+	ATCOPIA15	Copia	LTR	570	short	14	low	9471048	chromoarm	0	.	.	.	.	.	.	.
Chr1	24275589	24275609	AT1TE79815	.	+	ATCOPIA11	Copia	LTR	21	tiny	26	low	9471618	chromoarm	0	.	.	.	.	.	.	.
Chr1	24279533	24279582	AT1TE79825	.	-	HELITRONY2	Helitron	RC	49	tiny	198	medium	9475563	chromoarm	1235	no-CHH	no-CHH	.	.	.	.	.
Chr1	24279582	24281393	AT1TE79830	.	+	ATREP10D	Helitron	RC	1811	short	1295	high	9475612	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	24281393	24281480	AT1TE79835	.	-	HELITRONY3	Helitron	RC	87	tiny	1399	high	9477423	chromoarm	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	24286882	24287008	AT1TE79845	.	-	ATCOPIA23	Copia	LTR	126	short	8	low	9482912	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	24294768	24294914	AT1TE79870	.	+	ATHATN2	HAT	DNA	146	short	46	low	9490798	chromoarm	202	no-CHH	no-CHH	.	.	.	.	.
Chr1	24314608	24314646	AT1TE79930	.	+	HELITRONY1D	Helitron	RC	38	tiny	756	high	9510638	chromoarm	281	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	24314646	24315196	AT1TE79935	.	-	HELITRONY3	Helitron	RC	550	short	1399	high	9510676	chromoarm	319	no-CHH	no-CHH	.	.	.	.	.
Chr1	24317403	24317613	AT1TE79940	.	+	RathE1_cons	.	RathE1_cons	210	short	213	high	9513433	chromoarm	0	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	24319383	24319555	AT1TE79945	.	-	ATCOPIA11	Copia	LTR	172	short	26	low	9515413	chromoarm	350	no-CHH	no-CHH	.	.	.	.	.
Chr1	24330366	24331130	AT1TE79980	.	-	ATREP11A	Helitron	RC	764	short	95	medium	9526396	chromoarm	379	no-CHH	no-CHH	.	.	.	.	.
Chr1	24331868	24332433	AT1TE79985	.	-	HELITRONY1D	Helitron	RC	565	short	756	high	9527898	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	24337781	24338144	AT1TE79995	.	-	ATLINE1A	L1	LINE	363	short	289	high	9533811	chromoarm	3134	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	24346778	24347276	AT1TE80020	.	+	ATLINE2	L1	LINE	498	short	138	medium	9542808	chromoarm	515	no-CHH	no-CHH	.	.	.	.	.
Chr1	24349728	24349848	AT1TE80025	.	-	ATLINE1_3A	L1	LINE	120	short	160	medium	9545758	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	24350205	24350419	AT1TE80030	.	+	ATLINE1A	L1	LINE	214	short	289	high	9546235	chromoarm	84	no-CHH	no-CHH	.	.	.	.	.
Chr1	24350740	24352986	AT1TE80035	.	+	VANDAL1N1	MuDR	DNA	2246	medium	52	medium	9546770	chromoarm	619	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	24356396	24356536	AT1TE80045	.	+	RathE1_cons	.	RathE1_cons	140	short	213	high	9552426	chromoarm	1221	no-CHH	no-CHH	.	.	.	.	.
Chr1	24360686	24360979	AT1TE80055	.	-	VANDAL21	MuDR	DNA	293	short	64	medium	9556716	chromoarm	191	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	24366630	24366851	AT1TE80065	.	-	ATHILA7	Gypsy	LTR	221	short	134	medium	9562660	chromoarm	225	no-CHH	no-CHH	.	.	.	.	.
Chr1	24386455	24387255	AT1TE80120	.	-	ATMUN1	MuDR	DNA	800	short	107	medium	9582485	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	24393695	24394163	AT1TE80140	.	-	ATREP1	Helitron	RC	468	short	498	high	9589725	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	24402524	24403295	AT1TE80170	.	+	ATREP4	Helitron	RC	771	short	832	high	9598554	chromoarm	1779	no-CHH	no-CHH	.	.	.	.	.
Chr1	24409760	24409819	AT1TE80190	.	-	RathE3_cons	.	RathE3_cons	59	tiny	104	medium	9605790	chromoarm	692	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	24413555	24414036	AT1TE80200	.	+	BRODYAGA1A	MuDR	DNA	481	short	586	high	9609585	chromoarm	28	no-CHH	no-CHH	.	.	.	.	.
Chr1	24413654	24413924	AT1TE80205	.	+	HELITRONY1C	Helitron	RC	270	short	120	medium	9609684	chromoarm	127	no-CHH	no-CHH	.	.	.	.	.
Chr1	24428899	24429318	AT1TE80250	.	+	ATCOPIA49	Copia	LTR	419	short	34	low	9624929	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	24436424	24436884	AT1TE80270	.	-	ATHATN5	HAT	DNA	460	short	42	low	9632454	chromoarm	172	no-CHH	no-CHH	.	.	.	.	.
Chr1	24447111	24447477	AT1TE80300	.	+	ATTIRX1C	.	DNA	366	short	39	low	9643141	chromoarm	989	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	24448676	24449740	AT1TE80305	.	-	ATREP11	Helitron	RC	1064	short	841	high	9644706	chromoarm	2355	no-CHH	no-CHH	.	.	.	.	.
Chr1	24454062	24454301	AT1TE80315	.	+	DT1	Mariner	DNA	239	short	123	medium	9650092	chromoarm	851	no-CHH	no-CHH	.	.	.	.	.
Chr1	24454751	24455281	AT1TE80320	.	+	ATLINE1_1	L1	LINE	530	short	61	medium	9650781	chromoarm	1540	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	24455281	24455310	AT1TE80325	.	+	ATLINE1_2	L1	LINE	29	tiny	41	low	9651311	chromoarm	2070	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	24461875	24462401	AT1TE80340	.	+	ATREP9	Helitron	RC	526	short	201	high	9657905	chromoarm	137	no-CHH	no-CHH	.	.	.	.	.
Chr1	24467556	24468241	AT1TE80350	.	+	HELITRONY3	Helitron	RC	685	short	1399	high	9663586	chromoarm	668	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	24483165	24483456	AT1TE80400	.	-	ATIS112A	Harbinger	DNA	291	short	173	medium	9679195	chromoarm	1756	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	24483923	24484053	AT1TE80405	.	+	ATREP5	Helitron	RC	130	short	624	high	9679953	chromoarm	1159	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	24484053	24484762	AT1TE80410	.	+	ATHPOGON3	Pogo	DNA	709	short	118	medium	9680083	chromoarm	450	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	24484763	24484855	AT1TE80415	.	+	ATCOPIA37	Copia	LTR	92	tiny	32	low	9680793	chromoarm	357	no-CHH	no-CHH	.	.	.	.	.
Chr1	24488772	24488881	AT1TE80425	.	-	ATREP10B	Helitron	RC	109	short	491	high	9684802	chromoarm	1291	no-RdDM	no-CHH	.	.	.	.	.
Chr1	24488881	24488974	AT1TE80430	.	-	ATREP1	Helitron	RC	93	tiny	498	high	9684911	chromoarm	1198	no-CHH	no-CHH	.	.	.	.	.
Chr1	24488974	24489420	AT1TE80435	.	+	ATHPOGON1	Pogo	DNA	446	short	174	medium	9685004	chromoarm	752	no-CHH	no-CHH	.	.	.	.	.
Chr1	24489420	24489610	AT1TE80440	.	-	ATCOPIA28	Copia	LTR	190	short	81	medium	9685450	chromoarm	562	no-CHH	no-CHH	.	.	.	.	.
Chr1	24494440	24494664	AT1TE80450	.	+	BRODYAGA1A	MuDR	DNA	224	short	586	high	9690470	chromoarm	69	no-CHH	no-CHH	.	.	.	.	.
Chr1	24498844	24499015	AT1TE80460	.	-	BRODYAGA1A	MuDR	DNA	171	short	586	high	9694874	chromoarm	194	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	24500749	24501603	AT1TE80465	.	-	ATREP11	Helitron	RC	854	short	841	high	9696779	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	24502679	24503378	AT1TE80470	.	+	HELITRONY1B	Helitron	RC	699	short	414	high	9698709	chromoarm	1	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	24502875	24503342	AT1TE80475	.	+	ATREP10A	Helitron	RC	467	short	279	high	9698905	chromoarm	197	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	24506417	24506616	AT1TE80485	.	-	TSCL	.	LINE?	200	short	81	medium	9702446	chromoarm	2016	.	.	LowExpressed	.	.	.	.
Chr1	24507414	24508526	AT1TE80490	.	+	HELITRONY1B	Helitron	RC	1112	short	414	high	9703444	chromoarm	106	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	24514627	24514787	AT1TE80510	.	+	ATMUN1	MuDR	DNA	160	short	107	medium	9710657	chromoarm	16	no-CHH	no-CHH	.	.	.	.	.
Chr1	24514787	24515193	AT1TE80515	.	+	ATTIR16T3A	.	DNA	406	short	106	medium	9710817	chromoarm	176	no-CHH	no-CHH	.	.	.	.	.
Chr1	24515193	24515306	AT1TE80520	.	-	BRODYAGA1	MuDR	DNA	113	short	251	high	9711223	chromoarm	582	no-CHH	no-CHH	.	.	.	.	.
Chr1	24529318	24529372	AT1TE80570	.	-	ATREP5	Helitron	RC	54	tiny	624	high	9725348	chromoarm	114	no-CHH	no-CHH	.	.	.	.	.
Chr1	24529372	24530253	AT1TE80575	.	+	ATREP15	Helitron	RC	881	short	1003	high	9725402	chromoarm	168	no-CHH	no-CHH	.	.	.	.	.
Chr1	24533030	24533095	AT1TE80580	.	-	HELITRONY1B	Helitron	RC	65	tiny	414	high	9729060	chromoarm	3826	no-CHH	no-CHH	.	.	.	.	.
Chr1	24533095	24533501	AT1TE80585	.	+	ATREP11	Helitron	RC	406	short	841	high	9729125	chromoarm	3891	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	24533501	24535062	AT1TE80590	.	+	ATREP11	Helitron	RC	1561	short	841	high	9729531	chromoarm	4025	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	24535062	24535306	AT1TE80595	.	+	ATREP6	Helitron	RC	244	short	181	medium	9731092	chromoarm	3781	no-CHH	no-CHH	.	.	.	.	.
Chr1	24544843	24545318	AT1TE80620	.	+	ATREP10D	Helitron	RC	475	short	1295	high	9740873	chromoarm	1541	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	24545318	24546634	AT1TE80625	.	+	ATREP3	Helitron	RC	1316	short	1439	high	9741348	chromoarm	225	no-CHH	no-CHH	.	.	.	.	.
Chr1	24546634	24546698	AT1TE80630	.	+	ATREP4	Helitron	RC	64	tiny	832	high	9742664	chromoarm	161	no-CHH	no-CHH	.	.	.	.	.
Chr1	24546698	24546725	AT1TE80635	.	+	ATREP15	Helitron	RC	27	tiny	1003	high	9742728	chromoarm	134	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	24551730	24551800	AT1TE80645	.	-	ATSINE4	.	SINE	70	tiny	98	medium	9747760	chromoarm	293	no-CHH	no-CHH	.	.	.	.	.
Chr1	24553445	24553577	AT1TE80650	.	+	HELITRONY1D	Helitron	RC	132	short	756	high	9749475	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	24553577	24554047	AT1TE80655	.	-	ATREP1	Helitron	RC	470	short	498	high	9749607	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	24563337	24564237	AT1TE80680	.	+	ATREP10B	Helitron	RC	900	short	491	high	9759367	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	24564237	24564712	AT1TE80685	.	+	HELITRONY1A	Helitron	RC	475	short	271	high	9760267	chromoarm	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	24564712	24565614	AT1TE80690	.	+	SIMPLEGUY1	Harbinger	DNA	902	short	116	medium	9760742	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	24569019	24569405	AT1TE80700	.	-	ATHPOGON1	Pogo	DNA	386	short	174	medium	9765049	chromoarm	549	no-CHH	no-CHH	.	.	.	.	.
Chr1	24573516	24574310	AT1TE80710	.	+	BRODYAGA2	MuDR	DNA	794	short	525	high	9769546	chromoarm	33	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	24575647	24575756	AT1TE80715	.	-	ATLINE1_3A	L1	LINE	110	short	160	medium	9771676	chromoarm	355	.	.	.	.	.	.	.
Chr1	24576062	24576584	AT1TE80720	.	+	ATREP15	Helitron	RC	522	short	1003	high	9772092	chromoarm	771	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	24577177	24577413	AT1TE80725	.	-	ATDNATA1	Mariner	DNA	236	short	28	low	9773207	chromoarm	162	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	24586766	24586872	AT1TE80750	.	-	ATREP15	Helitron	RC	106	short	1003	high	9782796	chromoarm	85	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	24586872	24587898	AT1TE80755	.	-	ATREP3	Helitron	RC	1026	short	1439	high	9782902	chromoarm	191	no-CHH	no-CHH	.	.	.	.	.
Chr1	24587898	24587923	AT1TE80760	.	-	ATREP15	Helitron	RC	25	tiny	1003	high	9783928	chromoarm	345	no-CHH	no-CHH	.	.	.	.	.
Chr1	24593075	24593605	AT1TE80770	.	-	ATREP13	Helitron	RC	530	short	106	medium	9789105	chromoarm	459	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	24602905	24602985	AT1TE80800	.	+	ATREP10D	Helitron	RC	80	tiny	1295	high	9798935	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	24602985	24603053	AT1TE80805	.	+	HELITRONY1E	Helitron	RC	68	tiny	447	high	9799015	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	24603053	24603779	AT1TE80810	.	+	ATREP1	Helitron	RC	726	short	498	high	9799083	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	24603779	24603941	AT1TE80815	.	+	ATREP10D	Helitron	RC	162	short	1295	high	9799809	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	24604923	24604957	AT1TE80820	.	-	TNAT1A	.	DNA	34	tiny	162	medium	9800953	chromoarm	350	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	24604957	24605560	AT1TE80825	.	+	ATREP9	Helitron	RC	603	short	201	high	9800987	chromoarm	315	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	24607441	24608192	AT1TE80830	.	+	ARNOLDY1	MuDR	DNA	751	short	237	high	9803471	chromoarm	901	no-CHH	no-CHH	.	.	.	.	.
Chr1	24608192	24608900	AT1TE80835	.	+	ATREP3	Helitron	RC	708	short	1439	high	9804222	chromoarm	193	no-CHH	no-CHH	.	.	.	.	.
Chr1	24608381	24608605	AT1TE80840	.	+	ATTIRTA1	Tc1	DNA	224	short	95	medium	9804411	chromoarm	488	no-CHH	no-CHH	.	.	.	.	.
Chr1	24617950	24618103	AT1TE80870	.	-	ATTIRX1A	.	DNA	153	short	63	medium	9813980	chromoarm	1208	no-CHH	no-CHH	.	.	.	.	.
Chr1	24622553	24622623	AT1TE80880	.	+	RathE2_cons	.	RathE2_cons	70	tiny	74	medium	9818583	chromoarm	1708	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	24624736	24625304	AT1TE80885	.	-	ATREP10D	Helitron	RC	568	short	1295	high	9820766	chromoarm	3225	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	24630704	24631157	AT1TE80895	.	-	ATREP10B	Helitron	RC	453	short	491	high	9826734	chromoarm	345	no-CHH	no-CHH	.	.	.	.	.
Chr1	24641519	24641664	AT1TE80920	.	-	ARNOLD1	MuDR	DNA	145	short	39	low	9837549	chromoarm	297	no-CHH	no-CHH	.	.	.	.	.
Chr1	24641664	24642290	AT1TE80925	.	+	ARNOLDY2	MuDR	DNA	626	short	288	high	9837694	chromoarm	442	no-CHH	no-CHH	.	.	.	.	.
Chr1	24642290	24642326	AT1TE80930	.	+	ATREP15	Helitron	RC	36	tiny	1003	high	9838320	chromoarm	1068	no-CHH	no-CHH	.	.	.	.	.
Chr1	24642326	24642361	AT1TE80935	.	+	ATREP11	Helitron	RC	35	tiny	841	high	9838356	chromoarm	1104	no-CHH	no-CHH	.	.	.	.	.
Chr1	24644961	24645031	AT1TE80940	.	+	ATREP11A	Helitron	RC	70	tiny	95	medium	9840991	chromoarm	2189	no-CHH	no-CHH	.	.	.	.	.
Chr1	24645031	24645065	AT1TE80945	.	+	ATREP4	Helitron	RC	34	tiny	832	high	9841061	chromoarm	2155	no-CHH	no-RdDM	.	.	.	.	.
Chr1	24645065	24646116	AT1TE80950	.	+	ATREP2	Helitron	RC	1051	short	164	medium	9841095	chromoarm	1104	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	24646116	24646139	AT1TE80955	.	+	ATREP1	Helitron	RC	23	tiny	498	high	9842146	chromoarm	1081	no-CHH	no-CHH	.	.	.	.	.
Chr1	24658617	24658694	AT1TE80990	.	+	ATREP15	Helitron	RC	77	tiny	1003	high	9854647	chromoarm	1097	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	24658694	24659730	AT1TE80995	.	-	ATREP4	Helitron	RC	1036	short	832	high	9854724	chromoarm	1174	no-CHH	no-CHH	.	.	.	.	.
Chr1	24662959	24664035	AT1TE81005	.	-	HELITRONY1D	Helitron	RC	1076	short	756	high	9858989	chromoarm	1699	no-CHH	no-CHH	.	.	.	.	.
Chr1	24674782	24675019	AT1TE81040	.	-	ATGP1	Gypsy	LTR	237	short	144	medium	9870812	chromoarm	1121	no-CHH	no-CHH	.	.	.	.	.
Chr1	24675704	24676037	AT1TE81045	.	-	ATLINEIII	L1	LINE	333	short	196	medium	9871734	chromoarm	1284	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	24676037	24676567	AT1TE81050	.	-	ATDNA2T9C	MuDR	DNA	530	short	242	high	9872067	chromoarm	754	no-CHH	no-CHH	.	.	.	.	.
Chr1	24677223	24677330	AT1TE81055	.	+	LIMPET1	MuDR	DNA	107	short	116	medium	9873253	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	24679816	24680722	AT1TE81060	.	+	ATREP10D	Helitron	RC	906	short	1295	high	9875846	chromoarm	1570	no-CHH	no-CHH	.	.	.	.	.
Chr1	24682375	24682962	AT1TE81065	.	+	BRODYAGA2	MuDR	DNA	587	short	525	high	9878405	chromoarm	43	no-CHH	no-CHH	.	.	.	.	.
Chr1	24687333	24688435	AT1TE81075	.	-	ATREP19	.	DNA	1102	short	189	medium	9883363	chromoarm	6	no-CHH	no-CHH	.	.	.	.	.
Chr1	24688435	24688472	AT1TE81080	.	-	BRODYAGA1	MuDR	DNA	37	tiny	251	high	9884465	chromoarm	1108	no-CHH	no-CHH	.	.	.	.	.
Chr1	24688472	24688564	AT1TE81085	.	-	ATREP10B	Helitron	RC	92	tiny	491	high	9884502	chromoarm	1145	no-CHH	no-CHH	.	.	.	.	.
Chr1	24688564	24688840	AT1TE81090	.	-	ATTIRX1B	.	DNA	276	short	44	low	9884594	chromoarm	1237	no-CHH	no-CHH	.	.	.	.	.
Chr1	24692058	24692411	AT1TE81100	.	+	ATREP19	.	DNA	353	short	189	medium	9888088	chromoarm	651	no-CHH	no-CHH	.	.	.	.	.
Chr1	24703907	24704181	AT1TE81140	.	+	ATREP11	Helitron	RC	274	short	841	high	9899937	chromoarm	912	no-CHH	no-CHH	.	.	.	.	.
Chr1	24704181	24704959	AT1TE81145	.	+	HELITRONY1D	Helitron	RC	778	short	756	high	9900211	chromoarm	1186	no-CHH	no-CHH	.	.	.	.	.
Chr1	24704986	24706028	AT1TE81150	.	+	SIMPLEGUY1	Harbinger	DNA	1042	short	116	medium	9901016	chromoarm	730	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	24706344	24706764	AT1TE81155	.	+	ATREP1	Helitron	RC	420	short	498	high	9902374	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	24709060	24709194	AT1TE81160	.	+	ATLINE1_3A	L1	LINE	134	short	160	medium	9905090	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	24718179	24718476	AT1TE81190	.	+	ATREP1	Helitron	RC	297	short	498	high	9914209	chromoarm	129	no-CHH	no-CHH	.	.	.	.	.
Chr1	24718477	24719103	AT1TE81195	.	+	ATREP2	Helitron	RC	627	short	164	medium	9914506	chromoarm	426	.	.	.	.	.	.	.
Chr1	24719103	24719247	AT1TE81200	.	+	ATREP11A	Helitron	RC	144	short	95	medium	9915133	chromoarm	1053	no-CHH	no-CHH	.	.	.	.	.
Chr1	24719247	24719275	AT1TE81205	.	+	ATREP1	Helitron	RC	28	tiny	498	high	9915277	chromoarm	1197	no-CHH	no-CHH	.	.	.	.	.
Chr1	24720722	24721037	AT1TE81210	.	+	TAT1_ATH	Gypsy	LTR	315	short	87	medium	9916752	chromoarm	1933	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	24724642	24725465	AT1TE81220	.	+	HELITRONY3	Helitron	RC	823	short	1399	high	9920672	chromoarm	167	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	24728746	24729366	AT1TE81230	.	-	ATDNA2T9C	MuDR	DNA	620	short	242	high	9924776	chromoarm	132	no-CHH	no-CHH	.	.	.	.	.
Chr1	24732582	24732951	AT1TE81240	.	+	ATHPOGON1	Pogo	DNA	370	short	174	medium	9928611	chromoarm	437	.	.	.	.	.	.	.
Chr1	24732951	24733719	AT1TE81245	.	+	ATHPOGON1	Pogo	DNA	768	short	174	medium	9928981	chromoarm	807	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	24733719	24733815	AT1TE81250	.	-	ATREP3	Helitron	RC	96	tiny	1439	high	9929749	chromoarm	882	no-CHH	no-CHH	.	.	.	.	.
Chr1	24741000	24741045	AT1TE81270	.	-	ARNOLDY1	MuDR	DNA	45	tiny	237	high	9937030	chromoarm	1647	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	24741045	24742542	AT1TE81275	.	-	HELITRONY3	Helitron	RC	1497	short	1399	high	9937075	chromoarm	1692	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	24742875	24743082	AT1TE81280	.	-	ATCOPIA53	Copia	LTR	207	short	5	low	9938905	chromoarm	3522	no-CHH	no-CHH	.	.	.	.	.
Chr1	24744925	24745330	AT1TE81285	.	+	ATTIRX1C	.	DNA	405	short	39	low	9940955	chromoarm	2996	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	24752623	24752757	AT1TE81300	.	+	ATREP15	Helitron	RC	134	short	1003	high	9948653	chromoarm	16	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	24752757	24753408	AT1TE81305	.	-	ATREP3	Helitron	RC	651	short	1439	high	9948787	chromoarm	150	no-CHH	no-CHH	.	.	.	.	.
Chr1	24761788	24762097	AT1TE81330	.	+	ATMUNX1	MuDR	DNA	309	short	155	medium	9957818	chromoarm	1954	no-CHH	no-CHH	.	.	.	.	.
Chr1	24766204	24766778	AT1TE81340	.	-	ATREP3	Helitron	RC	574	short	1439	high	9962234	chromoarm	804	no-CHH	no-CHH	.	.	.	.	.
Chr1	24767628	24768128	AT1TE81345	.	-	ATREP10D	Helitron	RC	500	short	1295	high	9963658	chromoarm	2228	no-CHH	no-CHH	.	.	.	.	.
Chr1	24769686	24769834	AT1TE81350	.	-	TA11	L1	LINE	148	short	157	medium	9965716	chromoarm	1021	no-CHH	no-CHH	.	.	.	.	.
Chr1	24773154	24773253	AT1TE81360	.	-	ATCOPIA24	Copia	LTR	99	tiny	27	low	9969184	chromoarm	1177	no-CHH	no-CHH	.	.	.	.	.
Chr1	24773788	24774043	AT1TE81365	.	-	ATHATN1	HAT	DNA	255	short	69	medium	9969818	chromoarm	387	no-CHH	no-CHH	.	.	.	.	.
Chr1	24776633	24776698	AT1TE81370	.	-	RP1_AT	.	DNA	65	tiny	87	medium	9972663	chromoarm	485	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	24784391	24784473	AT1TE81400	.	+	ATREP15	Helitron	RC	82	tiny	1003	high	9980421	chromoarm	40	no-CHH	no-CHH	.	.	.	.	.
Chr1	24784473	24785914	AT1TE81405	.	+	ATREP4	Helitron	RC	1441	short	832	high	9980503	chromoarm	122	no-CHH	no-CHH	.	.	.	.	.
Chr1	24793771	24794915	AT1TE81430	.	+	HELITRONY3	Helitron	RC	1144	short	1399	high	9989801	chromoarm	410	no-CHH	no-CHH	.	.	.	.	.
Chr1	24794915	24795076	AT1TE81435	.	+	ATREP11	Helitron	RC	161	short	841	high	9990945	chromoarm	249	no-CHH	no-CHH	.	.	.	.	.
Chr1	24797827	24798653	AT1TE81440	.	-	ATREP10A	Helitron	RC	826	short	279	high	9993857	chromoarm	1229	no-CHH	no-CHH	.	.	.	.	.
Chr1	24822331	24822382	AT1TE81520	.	-	ATREP3	Helitron	RC	51	tiny	1439	high	10018361	chromoarm	54	no-CHH	no-CHH	.	.	.	.	.
Chr1	24822382	24823214	AT1TE81525	.	+	HELITRONY3	Helitron	RC	832	short	1399	high	10018412	chromoarm	105	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	24822470	24822535	AT1TE81530	.	-	ATREP10C	Helitron	RC	65	tiny	123	medium	10018500	chromoarm	193	no-CHH	RDR6-RdDM	.	.	.	.	.
Chr1	24822535	24822940	AT1TE81535	.	-	ATREP10A	Helitron	RC	405	short	279	high	10018565	chromoarm	258	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	24831578	24832636	AT1TE81560	.	+	HELITRONY3	Helitron	RC	1058	short	1399	high	10027608	chromoarm	308	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	24832636	24832699	AT1TE81565	.	-	SIMPLEHAT2	HAT	DNA	63	tiny	73	medium	10028666	chromoarm	879	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	24834697	24834868	AT1TE81570	.	+	ATREP3	Helitron	RC	171	short	1439	high	10030727	chromoarm	66	no-CHH	no-CHH	.	.	.	.	.
Chr1	24834868	24835310	AT1TE81575	.	+	ATREP19	.	DNA	442	short	189	medium	10030898	chromoarm	0	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	24837367	24838286	AT1TE81580	.	+	ATREP7	Helitron	RC	919	short	164	medium	10033397	chromoarm	125	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	24844529	24844821	AT1TE81600	.	+	ATREP3	Helitron	RC	292	short	1439	high	10040559	chromoarm	2372	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	24847018	24847152	AT1TE81605	.	-	ATDNA2T9C	MuDR	DNA	134	short	242	high	10043048	chromoarm	1253	no-CHH	no-CHH	.	.	.	.	.
Chr1	24847152	24847594	AT1TE81610	.	-	HELITRONY1B	Helitron	RC	442	short	414	high	10043182	chromoarm	811	no-CHH	no-CHH	.	.	.	.	.
Chr1	24847604	24847706	AT1TE81615	.	+	BRODYAGA1	MuDR	DNA	102	short	251	high	10043634	chromoarm	699	no-CHH	no-CHH	.	.	.	.	.
Chr1	24854171	24854551	AT1TE81630	.	-	BRODYAGA1A	MuDR	DNA	380	short	586	high	10050201	chromoarm	127	no-CHH	no-CHH	.	.	.	.	.
Chr1	24871046	24871336	AT1TE81680	.	-	ATREP1	Helitron	RC	290	short	498	high	10067076	chromoarm	248	no-CHH	no-CHH	.	.	.	.	.
Chr1	24871336	24871533	AT1TE81685	.	+	ATHPOGON3	Pogo	DNA	197	short	118	medium	10067366	chromoarm	538	no-CHH	no-CHH	.	.	.	.	.
Chr1	24871533	24872092	AT1TE81690	.	+	ATHPOGON1	Pogo	DNA	559	short	174	medium	10067563	chromoarm	735	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	24872092	24873272	AT1TE81695	.	+	ATREP10A	Helitron	RC	1180	short	279	high	10068122	chromoarm	187	no-CHH	no-CHH	.	.	.	.	.
Chr1	24874917	24875301	AT1TE81700	.	+	ATREP19	.	DNA	384	short	189	medium	10070947	chromoarm	227	no-CHH	no-CHH	.	.	.	.	.
Chr1	24875301	24875442	AT1TE81705	.	-	ATREP15	Helitron	RC	141	short	1003	high	10071331	chromoarm	611	no-CHH	no-CHH	.	.	.	.	.
Chr1	24875442	24877077	AT1TE81710	.	-	HELITRONY3	Helitron	RC	1635	short	1399	high	10071472	chromoarm	752	no-CHH	no-CHH	.	.	.	.	.
Chr1	24877077	24877097	AT1TE81715	.	+	ATREP10D	Helitron	RC	20	tiny	1295	high	10073107	chromoarm	2387	no-CHH	no-CHH	.	.	.	.	.
Chr1	24877097	24877222	AT1TE81720	.	-	TAG3N1	HAT	DNA	125	short	97	medium	10073127	chromoarm	2407	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	24878078	24878317	AT1TE81725	.	-	ATREP15	Helitron	RC	239	short	1003	high	10074108	chromoarm	2918	no-CHH	no-CHH	.	.	.	.	.
Chr1	24878317	24878880	AT1TE81730	.	-	HELITRONY1D	Helitron	RC	563	short	756	high	10074347	chromoarm	2355	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	24893921	24893994	AT1TE81780	.	+	SIMPLEHAT2	HAT	DNA	73	tiny	73	medium	10089951	chromoarm	373	no-RdDM	no-CHH	.	.	.	.	.
Chr1	24893994	24894518	AT1TE81785	.	-	BRODYAGA1A	MuDR	DNA	524	short	586	high	10090024	chromoarm	256	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	24897026	24897070	AT1TE81790	.	-	BRODYAGA1	MuDR	DNA	44	tiny	251	high	10093056	chromoarm	11	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	24897070	24897486	AT1TE81795	.	-	ATREP5	Helitron	RC	416	short	624	high	10093100	chromoarm	55	PolIV-and-RDR6-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	24897486	24897699	AT1TE81800	.	-	BRODYAGA1	MuDR	DNA	213	short	251	high	10093516	chromoarm	471	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	24899622	24899712	AT1TE81805	.	-	ATREP19	.	DNA	90	tiny	189	medium	10095652	chromoarm	2397	no-CHH	no-CHH	.	.	.	.	.
Chr1	24899712	24901331	AT1TE81810	.	-	ATREP15	Helitron	RC	1619	short	1003	high	10095742	chromoarm	778	no-CHH	no-CHH	.	.	.	.	.
Chr1	24901331	24901435	AT1TE81815	.	-	TSCL	.	LINE?	104	short	81	medium	10097361	chromoarm	674	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	24907484	24908870	AT1TE81825	.	-	HELITRONY3	Helitron	RC	1386	short	1399	high	10103514	chromoarm	248	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	24917598	24917773	AT1TE81850	.	-	ATCOPIA13	Copia	LTR	176	short	35	low	10113627	chromoarm	238	.	.	ExpressedAndAnnotated	24918081	24917612	-	transcript_id-"4d7c15f5-f30f-4fba-b8ed-f2e04c4cb8d6|5"
Chr1	24918426	24918569	AT1TE81855	.	-	ATCOPIA13	Copia	LTR	143	short	35	low	10114456	chromoarm	70	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	24923497	24923612	AT1TE81865	.	+	ATCOPIA28	Copia	LTR	115	short	81	medium	10119527	chromoarm	1241	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	24930463	24930717	AT1TE81880	.	-	ATHAT10	HAT	DNA	254	short	35	low	10126493	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	24937492	24937572	AT1TE81900	.	+	RathE1_cons	.	RathE1_cons	80	tiny	213	high	10133522	chromoarm	199	no-CHH	no-CHH	.	.	.	.	.
Chr1	24938849	24939191	AT1TE81905	.	-	VANDAL1N1	MuDR	DNA	342	short	52	medium	10134879	chromoarm	17	no-CHH	no-CHH	.	.	.	.	.
Chr1	24939310	24939423	AT1TE81910	.	-	TNAT1A	.	DNA	113	short	162	medium	10135340	chromoarm	252	no-CHH	no-CHH	.	.	.	.	.
Chr1	24939977	24940484	AT1TE81915	.	+	ATREP19	.	DNA	507	short	189	medium	10136007	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	24940487	24940530	AT1TE81920	.	-	HELITRON4	Helitron	RC	43	tiny	199	medium	10136517	chromoarm	476	no-CHH	no-CHH	.	.	.	.	.
Chr1	24944355	24944474	AT1TE81930	.	-	ATREP10B	Helitron	RC	119	short	491	high	10140385	chromoarm	3	no-CHH	no-CHH	.	.	.	.	.
Chr1	24944474	24945536	AT1TE81935	.	-	ATREP1	Helitron	RC	1062	short	498	high	10140504	chromoarm	5	no-CHH	no-CHH	.	.	.	.	.
Chr1	24945871	24946297	AT1TE81940	.	-	ATREP5	Helitron	RC	426	short	624	high	10141901	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	24946297	24946537	AT1TE81945	.	+	HELITRONY1E	Helitron	RC	240	short	447	high	10142327	chromoarm	390	no-CHH	no-CHH	.	.	.	.	.
Chr1	24948087	24948353	AT1TE81950	.	-	RP1_AT	.	DNA	266	short	87	medium	10144117	chromoarm	0	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	24955985	24956637	AT1TE81980	.	+	ATREP4	Helitron	RC	652	short	832	high	10152015	chromoarm	547	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	24958430	24958632	AT1TE81985	.	-	ATCOPIA80	Copia	LTR	202	short	7	low	10154460	chromoarm	340	no-CHH	no-CHH	.	.	.	.	.
Chr1	24958653	24959318	AT1TE81990	.	+	HELITRONY1E	Helitron	RC	665	short	447	high	10154683	chromoarm	233	no-CHH	no-CHH	.	.	.	.	.
Chr1	24959318	24959340	AT1TE81995	.	-	ATREP11	Helitron	RC	22	tiny	841	high	10155348	chromoarm	211	no-CHH	no-CHH	.	.	.	.	.
Chr1	24968820	24969147	AT1TE82020	.	-	HELITRONY1D	Helitron	RC	327	short	756	high	10164850	chromoarm	1375	no-CHH	no-CHH	.	.	.	.	.
Chr1	24975915	24976280	AT1TE82040	.	-	ATDNA12T3_2	.	DNA	365	short	660	high	10171945	chromoarm	1231	no-CHH	no-CHH	.	.	.	.	.
Chr1	24976483	24976764	AT1TE82045	.	-	ATLINE1_3A	L1	LINE	281	short	160	medium	10172513	chromoarm	1474	no-CHH	no-CHH	.	.	.	.	.
Chr1	24977684	24977818	AT1TE82050	.	+	ATLINE1_3A	L1	LINE	135	short	160	medium	10173713	chromoarm	420	.	.	.	.	.	.	.
Chr1	24988712	24988814	AT1TE82090	.	-	SIMPLEHAT1	HAT	DNA	102	short	56	medium	10184742	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	24991137	24991165	AT1TE82095	.	+	ATENSPM4	En-Spm	DNA	28	tiny	50	medium	10187167	chromoarm	1473	no-CHH	no-CHH	.	.	.	.	.
Chr1	24991165	24991409	AT1TE82100	.	-	DT1	Mariner	DNA	244	short	123	medium	10187195	chromoarm	1336	no-CHH	no-CHH	.	.	.	.	.
Chr1	24991409	24991503	AT1TE82105	.	-	ATREP5	Helitron	RC	94	tiny	624	high	10187439	chromoarm	1242	no-CHH	no-CHH	.	.	.	.	.
Chr1	25015299	25015534	AT1TE82180	.	-	ATDNATA1	Mariner	DNA	235	short	28	low	10211329	chromoarm	864	no-CHH	no-CHH	.	.	.	.	.
Chr1	25022118	25022577	AT1TE82200	.	-	VANDAL17	MuDR	DNA	459	short	178	medium	10218148	chromoarm	196	no-CHH	no-CHH	.	.	.	.	.
Chr1	25028107	25028605	AT1TE82210	.	-	HELITRONY3	Helitron	RC	498	short	1399	high	10224137	chromoarm	256	no-CHH	no-CHH	.	.	.	.	.
Chr1	25034156	25035674	AT1TE82220	.	+	HELITRONY3	Helitron	RC	1518	short	1399	high	10230186	chromoarm	1054	no-CHH	no-CHH	.	.	.	.	.
Chr1	25035674	25035924	AT1TE82225	.	-	ATREP10B	Helitron	RC	250	short	491	high	10231704	chromoarm	804	no-CHH	no-CHH	.	.	.	.	.
Chr1	25051699	25052655	AT1TE82270	.	-	ATREP19	.	DNA	956	short	189	medium	10247729	chromoarm	1145	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	25056917	25057282	AT1TE82280	.	+	ATLINE1_5	L1	LINE	365	short	91	medium	10252947	chromoarm	2258	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	25097890	25099159	AT1TE82410	.	+	HELITRONY3	Helitron	RC	1269	short	1399	high	10293920	chromoarm	102	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	25120706	25120950	AT1TE82480	.	-	ATLINE1A	L1	LINE	244	short	289	high	10316736	chromoarm	346	no-CHH	no-CHH	.	.	.	.	.
Chr1	25121966	25122166	AT1TE82485	.	+	ATREP10B	Helitron	RC	200	short	491	high	10317996	chromoarm	293	no-CHH	no-CHH	.	.	.	.	.
Chr1	25123236	25123349	AT1TE82490	.	-	ATTIR16T3A	.	DNA	113	short	106	medium	10319266	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	25138319	25138847	AT1TE82540	.	-	ATREP4	Helitron	RC	528	short	832	high	10334349	chromoarm	2491	no-CHH	no-CHH	.	.	.	.	.
Chr1	25144500	25144962	AT1TE82550	.	-	ATREP10D	Helitron	RC	462	short	1295	high	10340530	chromoarm	624	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	25159042	25163500	AT1TE82600	.	+	ATMU2	MuDR	DNA	4458	medium	64	medium	10355072	chromoarm	307	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	25170582	25170717	AT1TE82620	.	+	ATREP18	.	DNA	135	short	391	high	10366612	chromoarm	1275	no-CHH	no-CHH	.	.	.	.	.
Chr1	25173391	25173675	AT1TE82625	.	+	ATCOPIA78	Copia	LTR	284	short	24	low	10369421	chromoarm	2306	no-CHH	no-CHH	.	.	.	.	.
Chr1	25180003	25182025	AT1TE82640	.	+	ARNOLDY2	MuDR	DNA	2022	medium	288	high	10376033	chromoarm	1151	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	25182025	25182552	AT1TE82645	.	+	ATREP10D	Helitron	RC	527	short	1295	high	10378055	chromoarm	624	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	25186013	25186090	AT1TE82655	.	+	HELITRONY3	Helitron	RC	77	tiny	1399	high	10382043	chromoarm	220	no-CHH	no-CHH	.	.	.	.	.
Chr1	25186090	25186571	AT1TE82660	.	+	ATREP3	Helitron	RC	481	short	1439	high	10382120	chromoarm	297	no-CHH	no-CHH	.	.	.	.	.
Chr1	25186571	25187854	AT1TE82665	.	-	ATREP4	Helitron	RC	1283	short	832	high	10382601	chromoarm	708	no-CHH	no-CHH	.	.	.	.	.
Chr1	25187854	25188014	AT1TE82670	.	+	HELITRONY3	Helitron	RC	160	short	1399	high	10383884	chromoarm	548	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	25190718	25191177	AT1TE82675	.	-	ATDNA2T9C	MuDR	DNA	459	short	242	high	10386748	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	25197140	25197225	AT1TE82685	.	+	ATREP15	Helitron	RC	85	tiny	1003	high	10393170	chromoarm	389	no-CHH	no-CHH	.	.	.	.	.
Chr1	25197225	25197247	AT1TE82690	.	+	ATENSPM4	En-Spm	DNA	22	tiny	50	medium	10393255	chromoarm	474	no-CHH	no-RdDM	.	.	.	.	.
Chr1	25197247	25198112	AT1TE82695	.	+	ATREP3	Helitron	RC	865	short	1439	high	10393277	chromoarm	69	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	25212831	25212986	AT1TE82740	.	+	HELITRON2	Helitron	RC	155	short	194	medium	10408861	chromoarm	419	no-CHH	no-CHH	.	.	.	.	.
Chr1	25226571	25227819	AT1TE82780	.	+	ATREP11	Helitron	RC	1248	short	841	high	10422601	chromoarm	2503	no-CHH	no-CHH	.	.	.	.	.
Chr1	25226704	25227229	AT1TE82785	.	+	VANDALNX2	MuDR	DNA	525	short	37	low	10422734	chromoarm	3093	no-CHH	no-CHH	.	.	.	.	.
Chr1	25228610	25229782	AT1TE82790	.	-	ATREP11	Helitron	RC	1172	short	841	high	10424640	chromoarm	540	no-CHH	no-CHH	.	.	.	.	.
Chr1	25245300	25245742	AT1TE82840	.	-	HELITRONY1D	Helitron	RC	442	short	756	high	10441330	chromoarm	0	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	25247502	25248117	AT1TE82845	.	-	HELITRON2	Helitron	RC	615	short	194	medium	10443532	chromoarm	0	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	25247589	25247851	AT1TE82850	.	+	DT1	Mariner	DNA	262	short	123	medium	10443619	chromoarm	247	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	25254341	25254587	AT1TE82870	.	+	ATCOPIA94	Copia	LTR	246	short	39	low	10450371	chromoarm	676	no-CHH	no-CHH	.	.	.	.	.
Chr1	25274701	25274767	AT1TE82940	.	+	ATTIR16T3A	.	DNA	66	tiny	106	medium	10470731	chromoarm	1285	no-CHH	no-CHH	.	.	.	.	.
Chr1	25275487	25275547	AT1TE82945	.	+	HELITRONY1D	Helitron	RC	60	tiny	756	high	10471517	chromoarm	1746	no-CHH	no-CHH	.	.	.	.	.
Chr1	25275547	25276122	AT1TE82950	.	+	ATREP10B	Helitron	RC	575	short	491	high	10471577	chromoarm	1171	no-CHH	no-CHH	.	.	.	.	.
Chr1	25331530	25332083	AT1TE83130	.	+	ATREP10D	Helitron	RC	553	short	1295	high	10527560	chromoarm	565	no-CHH	no-RdDM	.	.	.	.	.
Chr1	25343132	25343303	AT1TE83170	.	+	ATHATN6	HAT	DNA	171	short	43	low	10539162	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	25343348	25343969	AT1TE83175	.	-	ATLINE1_1	L1	LINE	621	short	61	medium	10539378	chromoarm	105	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	25343969	25344163	AT1TE83180	.	+	ATENSPM6	En-Spm	DNA	194	short	151	medium	10539999	chromoarm	409	no-CHH	no-RdDM	LowExpressed	.	.	.	.
Chr1	25344308	25344450	AT1TE83185	.	+	ATHATN2	HAT	DNA	142	short	46	low	10540338	chromoarm	122	PolIV-and-RDR6-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	25354200	25354919	AT1TE83210	.	-	ATREP15	Helitron	RC	719	short	1003	high	10550230	chromoarm	292	no-CHH	no-CHH	.	.	.	.	.
Chr1	25357322	25357817	AT1TE83215	.	+	HELITRONY1D	Helitron	RC	495	short	756	high	10553352	chromoarm	2014	no-CHH	no-CHH	.	.	.	.	.
Chr1	25357818	25358421	AT1TE83220	.	+	ATREP2A	Helitron	RC	604	short	116	medium	10553847	chromoarm	1410	.	.	.	.	.	.	.
Chr1	25358437	25358474	AT1TE83225	.	+	ATREP2	Helitron	RC	37	tiny	164	medium	10554467	chromoarm	1357	no-RdDM	no-CHH	.	.	.	.	.
Chr1	25384012	25384683	AT1TE83300	.	+	ATREP3	Helitron	RC	671	short	1439	high	10580042	chromoarm	1810	no-CHH	no-CHH	.	.	.	.	.
Chr1	25395188	25395222	AT1TE83330	.	-	ATREP3	Helitron	RC	34	tiny	1439	high	10591218	chromoarm	190	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	25395222	25396132	AT1TE83335	.	+	ATREP11	Helitron	RC	910	short	841	high	10591252	chromoarm	224	no-CHH	no-CHH	.	.	.	.	.
Chr1	25396132	25396176	AT1TE83340	.	-	ATREP4	Helitron	RC	44	tiny	832	high	10592162	chromoarm	1134	no-CHH	no-CHH	.	.	.	.	.
Chr1	25396176	25396411	AT1TE83345	.	-	ATREP3	Helitron	RC	235	short	1439	high	10592206	chromoarm	1178	no-CHH	no-CHH	.	.	.	.	.
Chr1	25400478	25401474	AT1TE83355	.	-	SIMPLEGUY1	Harbinger	DNA	996	short	116	medium	10596508	chromoarm	185	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	25411656	25412067	AT1TE83380	.	+	HELITRONY1E	Helitron	RC	411	short	447	high	10607686	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	25423728	25424547	AT1TE83420	.	+	ATREP15	Helitron	RC	819	short	1003	high	10619758	chromoarm	431	no-CHH	no-CHH	.	.	.	.	.
Chr1	25424547	25424573	AT1TE83425	.	-	ATREP11	Helitron	RC	26	tiny	841	high	10620577	chromoarm	1250	no-CHH	no-CHH	.	.	.	.	.
Chr1	25428559	25429180	AT1TE83435	.	+	ATREP4	Helitron	RC	621	short	832	high	10624589	chromoarm	701	no-CHH	no-CHH	.	.	.	.	.
Chr1	25443950	25443996	AT1TE83480	.	+	HELITRON4	Helitron	RC	46	tiny	199	medium	10639980	chromoarm	943	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	25443996	25444427	AT1TE83485	.	+	HELITRONY1D	Helitron	RC	431	short	756	high	10640026	chromoarm	512	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	25448291	25448415	AT1TE83495	.	+	TAG1	HAT	DNA	124	short	28	low	10644321	chromoarm	1177	no-CHH	no-CHH	.	.	.	.	.
Chr1	25476805	25477319	AT1TE83580	.	-	ATENSPM1A	En-Spm	DNA	514	short	77	medium	10672835	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	25495787	25496662	AT1TE83640	.	-	ATREP10A	Helitron	RC	875	short	279	high	10691817	chromoarm	67	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	25505676	25506447	AT1TE83670	.	+	ATREP7	Helitron	RC	771	short	164	medium	10701706	chromoarm	452	no-CHH	no-CHH	.	.	.	.	.
Chr1	25527572	25527994	AT1TE83740	.	+	ATREP11	Helitron	RC	422	short	841	high	10723602	chromoarm	464	no-CHH	no-CHH	.	.	.	.	.
Chr1	25564281	25564412	AT1TE83860	.	-	ATREP4	Helitron	RC	131	short	832	high	10760311	chromoarm	333	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	25564412	25565250	AT1TE83865	.	+	ATREP10A	Helitron	RC	838	short	279	high	10760442	chromoarm	464	no-CHH	no-CHH	.	.	.	.	.
Chr1	25565250	25565864	AT1TE83870	.	-	AT9TSD1	MuDR	DNA	614	short	55	medium	10761280	chromoarm	118	no-CHH	no-CHH	.	.	.	.	.
Chr1	25565864	25566805	AT1TE83875	.	-	ATREP3	Helitron	RC	941	short	1439	high	10761894	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	25569337	25569720	AT1TE83880	.	+	ATDNA2T9C	MuDR	DNA	383	short	242	high	10765367	chromoarm	35	no-CHH	no-CHH	.	.	.	.	.
Chr1	25573401	25573688	AT1TE83890	.	-	ATLINE1_5	L1	LINE	287	short	91	medium	10769431	chromoarm	480	no-CHH	no-CHH	.	.	.	.	.
Chr1	25577157	25577946	AT1TE83900	.	+	ATREP11	Helitron	RC	789	short	841	high	10773187	chromoarm	1091	no-CHH	no-CHH	.	.	.	.	.
Chr1	25579933	25580164	AT1TE83905	.	+	HELITRONY1E	Helitron	RC	231	short	447	high	10775963	chromoarm	101	no-CHH	no-CHH	ExpressedAndAnnotated	25579375	25580119	+	transcript_id-"47ac18ce-78d7-4602-b4f9-7fa6e5c25303|6"
Chr1	25580164	25580567	AT1TE83910	.	-	HELITRONY3	Helitron	RC	403	short	1399	high	10776194	chromoarm	332	no-CHH	no-CHH	.	.	.	.	.
Chr1	25580567	25581976	AT1TE83915	.	+	ATREP3	Helitron	RC	1409	short	1439	high	10776597	chromoarm	735	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	25581976	25583821	AT1TE83920	.	+	HELITRONY3	Helitron	RC	1845	short	1399	high	10778006	chromoarm	2144	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	25585313	25585927	AT1TE83925	.	-	ATREP15	Helitron	RC	614	short	1003	high	10781343	chromoarm	48	no-CHH	no-CHH	.	.	.	.	.
Chr1	25590910	25591070	AT1TE83935	.	-	TAG1	HAT	DNA	160	short	28	low	10786940	chromoarm	656	no-CHH	no-CHH	.	.	.	.	.
Chr1	25594250	25594966	AT1TE83945	.	+	TAG3N1	HAT	DNA	716	short	97	medium	10790280	chromoarm	655	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	25594966	25595349	AT1TE83950	.	+	ATGP3	Gypsy	LTR	383	short	60	medium	10790996	chromoarm	1368	no-CHH	no-CHH	.	.	.	.	.
Chr1	25608826	25609043	AT1TE83990	.	-	ATTIRX1B	.	DNA	217	short	44	low	10804856	chromoarm	2198	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	25613311	25613735	AT1TE84000	.	-	ATMU3N1	MuDR	DNA	424	short	19	low	10809341	chromoarm	704	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	25613735	25613759	AT1TE84005	.	-	BOMZH2	MuDR	DNA	24	tiny	47	low	10809765	chromoarm	680	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	25622853	25623249	AT1TE84030	.	-	ATREP11	Helitron	RC	396	short	841	high	10818883	chromoarm	441	no-CHH	no-CHH	.	.	.	.	.
Chr1	25629202	25629790	AT1TE84040	.	+	BRODYAGA2	MuDR	DNA	588	short	525	high	10825232	chromoarm	2255	no-CHH	no-CHH	.	.	.	.	.
Chr1	25636580	25636843	AT1TE84060	.	+	ATDNA2T9C	MuDR	DNA	263	short	242	high	10832610	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	25639465	25639634	AT1TE84065	.	-	HELITRONY1D	Helitron	RC	169	short	756	high	10835495	chromoarm	2072	no-CHH	no-CHH	.	.	.	.	.
Chr1	25639634	25641849	AT1TE84070	.	-	ATDNAI27T9B	MuDR	DNA	2215	medium	43	low	10835664	chromoarm	988	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	25656468	25656974	AT1TE84120	.	-	ATREP3	Helitron	RC	506	short	1439	high	10852498	chromoarm	1039	no-CHH	no-CHH	.	.	.	.	.
Chr1	25656510	25656791	AT1TE84125	.	-	ATREP1	Helitron	RC	281	short	498	high	10852540	chromoarm	1081	no-CHH	no-CHH	.	.	.	.	.
Chr1	25674405	25674737	AT1TE84180	.	+	BRODYAGA1A	MuDR	DNA	332	short	586	high	10870435	chromoarm	1807	no-CHH	no-CHH	.	.	.	.	.
Chr1	25675396	25675909	AT1TE84185	.	-	ATREP4	Helitron	RC	513	short	832	high	10871426	chromoarm	635	no-CHH	no-CHH	.	.	.	.	.
Chr1	25678395	25678763	AT1TE84190	.	+	ATDNA2T9C	MuDR	DNA	368	short	242	high	10874425	chromoarm	128	no-CHH	no-CHH	.	.	.	.	.
Chr1	25690200	25693399	AT1TE84230	.	+	ATREP3	Helitron	RC	3199	medium	1439	high	10886230	chromoarm	526	no-CHH	no-CHH	.	.	.	.	.
Chr1	25691418	25692747	AT1TE84235	.	+	ATREP10D	Helitron	RC	1329	short	1295	high	10887448	chromoarm	1178	no-CHH	no-CHH	.	.	.	.	.
Chr1	25696500	25698524	AT1TE84245	.	+	SIMPLEGUY1	Harbinger	DNA	2024	medium	116	medium	10892530	chromoarm	1554	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	25699776	25700065	AT1TE84250	.	-	ATREP15	Helitron	RC	289	short	1003	high	10895806	chromoarm	1975	no-CHH	no-CHH	.	.	.	.	.
Chr1	25700065	25700720	AT1TE84255	.	+	META1	Copia	LTR	655	short	138	medium	10896095	chromoarm	1320	no-CHH	no-CHH	.	.	.	.	.
Chr1	25700720	25701770	AT1TE84260	.	-	ATREP19	.	DNA	1050	short	189	medium	10896750	chromoarm	270	no-CHH	no-CHH	.	.	.	.	.
Chr1	25704511	25705081	AT1TE84265	.	+	HELITRONY3	Helitron	RC	570	short	1399	high	10900541	chromoarm	1951	no-CHH	no-CHH	.	.	.	.	.
Chr1	25705081	25705258	AT1TE84270	.	+	RathE2_cons	.	RathE2_cons	177	short	74	medium	10901111	chromoarm	1774	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	25721405	25721523	AT1TE84320	.	+	ATREP11	Helitron	RC	118	short	841	high	10917435	chromoarm	123	no-CHH	no-CHH	.	.	.	.	.
Chr1	25721523	25721826	AT1TE84325	.	+	BRODYAGA1A	MuDR	DNA	303	short	586	high	10917553	chromoarm	241	no-CHH	no-CHH	.	.	.	.	.
Chr1	25722045	25722565	AT1TE84330	.	-	ATREP3	Helitron	RC	520	short	1439	high	10918075	chromoarm	763	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	25722565	25723569	AT1TE84335	.	+	SIMPLEGUY1	Harbinger	DNA	1004	short	116	medium	10918595	chromoarm	1283	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	25723789	25724229	AT1TE84340	.	+	ATCOPIA11	Copia	LTR	440	short	26	low	10919819	chromoarm	1580	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	25728311	25728788	AT1TE84350	.	+	HELITRONY1D	Helitron	RC	477	short	756	high	10924341	chromoarm	1076	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	25728937	25729089	AT1TE84355	.	+	ATLINE1_6	L1	LINE	152	short	129	medium	10924967	chromoarm	1702	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	25729216	25729737	AT1TE84360	.	+	ATREP11	Helitron	RC	521	short	841	high	10925246	chromoarm	1981	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	25729737	25730188	AT1TE84365	.	-	HELITRONY1D	Helitron	RC	451	short	756	high	10925767	chromoarm	2502	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	25730203	25730382	AT1TE84370	.	-	ATREP10D	Helitron	RC	179	short	1295	high	10926233	chromoarm	2968	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	25740387	25740938	AT1TE84400	.	-	ATREP1	Helitron	RC	551	short	498	high	10936417	chromoarm	2490	no-CHH	no-CHH	.	.	.	.	.
Chr1	25744172	25744770	AT1TE84410	.	-	ATREP10D	Helitron	RC	598	short	1295	high	10940202	chromoarm	2040	no-CHH	no-CHH	.	.	.	.	.
Chr1	25779499	25780236	AT1TE84520	.	+	ATREP2	Helitron	RC	737	short	164	medium	10975529	chromoarm	416	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	25780237	25780278	AT1TE84525	.	+	ATREP2	Helitron	RC	42	tiny	164	medium	10976266	chromoarm	1153	.	.	.	.	.	.	.
Chr1	25780278	25780460	AT1TE84530	.	+	HELITRONY1B	Helitron	RC	182	short	414	high	10976308	chromoarm	1195	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	25803788	25804254	AT1TE84610	.	+	ATHPOGON1	Pogo	DNA	466	short	174	medium	10999818	chromoarm	292	no-CHH	no-CHH	.	.	.	.	.
Chr1	25809379	25809770	AT1TE84620	.	-	ATGP1	Gypsy	LTR	391	short	144	medium	11005409	chromoarm	0	no-CHH	no-CHH	ExpressedAndAnnotated	25809278	25810235	+	transcript_id-"76f116b8-f4f6-42ba-b76b-1c3fadc7456c|3"
Chr1	25811308	25811447	AT1TE84625	.	-	ATREP10B	Helitron	RC	139	short	491	high	11007338	chromoarm	180	no-CHH	no-CHH	.	.	.	.	.
Chr1	25819803	25820979	AT1TE84650	.	+	ATREP10D	Helitron	RC	1176	short	1295	high	11015833	chromoarm	1962	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	25823825	25823960	AT1TE84655	.	-	ATCOPIA28	Copia	LTR	135	short	81	medium	11019855	chromoarm	0	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	25828489	25828932	AT1TE84665	.	+	ATREP5	Helitron	RC	443	short	624	high	11024519	chromoarm	157	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	25841785	25842264	AT1TE84700	.	+	ATREP10A	Helitron	RC	479	short	279	high	11037815	chromoarm	350	no-CHH	no-CHH	.	.	.	.	.
Chr1	25843407	25843725	AT1TE84705	.	+	ATREP11	Helitron	RC	318	short	841	high	11039437	chromoarm	1972	no-CHH	no-CHH	.	.	.	.	.
Chr1	25860276	25860444	AT1TE84750	.	-	HELITRONY3	Helitron	RC	168	short	1399	high	11056306	chromoarm	844	no-CHH	no-CHH	.	.	.	.	.
Chr1	25889215	25889340	AT1TE84840	.	+	ATHAT1	HAT	DNA	125	short	105	medium	11085245	chromoarm	0	no-CHH	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	25889340	25889366	AT1TE84845	.	-	ATCOPIA24	Copia	LTR	26	tiny	27	low	11085370	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	25896475	25896787	AT1TE84860	.	-	ATREP3	Helitron	RC	312	short	1439	high	11092505	chromoarm	200	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	25929540	25929686	AT1TE84970	.	+	ATCOPIA30	Copia	LTR	146	short	33	low	11125570	chromoarm	256	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	25954685	25954762	AT1TE85050	.	+	ATLINEIII	L1	LINE	77	tiny	196	medium	11150715	chromoarm	3080	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	25962219	25962303	AT1TE85070	.	+	ATREP4	Helitron	RC	84	tiny	832	high	11158249	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	25962303	25963306	AT1TE85075	.	-	ATREP3	Helitron	RC	1003	short	1439	high	11158333	chromoarm	44	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	25969467	25969758	AT1TE85090	.	+	VANDAL17	MuDR	DNA	291	short	178	medium	11165497	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	25975833	25975950	AT1TE85100	.	-	SIMPLEGUY1	Harbinger	DNA	117	short	116	medium	11171863	chromoarm	1550	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	25975950	25977038	AT1TE85105	.	-	SIMPLEGUY1	Harbinger	DNA	1088	short	116	medium	11171980	chromoarm	462	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	25977314	25977487	AT1TE85110	.	+	DT1	Mariner	DNA	173	short	123	medium	11173344	chromoarm	13	no-CHH	no-CHH	.	.	.	.	.
Chr1	25990478	25990503	AT1TE85150	.	-	BRODYAGA1A	MuDR	DNA	25	tiny	586	high	11186508	chromoarm	3155	no-CHH	no-CHH	.	.	.	.	.
Chr1	25990503	25991189	AT1TE85155	.	-	BRODYAGA2	MuDR	DNA	686	short	525	high	11186533	chromoarm	2469	no-CHH	no-CHH	.	.	.	.	.
Chr1	25991189	25991239	AT1TE85160	.	-	VANDAL17	MuDR	DNA	50	tiny	178	medium	11187219	chromoarm	2419	no-CHH	no-CHH	.	.	.	.	.
Chr1	25991239	25991443	AT1TE85165	.	+	ATREP4	Helitron	RC	204	short	832	high	11187269	chromoarm	2215	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	25999393	25999684	AT1TE85190	.	+	ATLINE1_3A	L1	LINE	291	short	160	medium	11195423	chromoarm	630	no-CHH	no-CHH	.	.	.	.	.
Chr1	26027635	26027758	AT1TE85280	.	-	ATRE1	Copia	LTR	123	short	22	low	11223665	chromoarm	356	no-CHH	no-CHH	.	.	.	.	.
Chr1	26030838	26036307	AT1TE85290	.	-	ATREP10D	Helitron	RC	5469	long	1295	high	11226868	chromoarm	0	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	26032277	26032625	AT1TE85295	.	-	ATREP19	.	DNA	348	short	189	medium	11228307	chromoarm	537	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	26043477	26043561	AT1TE85330	.	-	ATREP7	Helitron	RC	84	tiny	164	medium	11239507	chromoarm	978	no-CHH	no-CHH	.	.	.	.	.
Chr1	26043561	26044510	AT1TE85335	.	-	HELITRONY1A	Helitron	RC	949	short	271	high	11239591	chromoarm	779	no-CHH	no-CHH	.	.	.	.	.
Chr1	26044510	26044597	AT1TE85340	.	+	ATREP3	Helitron	RC	87	tiny	1439	high	11240540	chromoarm	692	no-CHH	no-CHH	.	.	.	.	.
Chr1	26076258	26076429	AT1TE85440	.	+	ATCOPIA68	Copia	LTR	171	short	43	low	11272288	chromoarm	838	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	26104590	26104936	AT1TE85530	.	-	ATENSPM9	En-Spm	DNA	346	short	97	medium	11300620	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	26139771	26140541	AT1TE85640	.	-	HELITRONY1B	Helitron	RC	770	short	414	high	11335801	chromoarm	1492	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	26169149	26171479	AT1TE85730	.	-	ATREP3	Helitron	RC	2330	medium	1439	high	11365179	chromoarm	647	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	26171479	26171791	AT1TE85735	.	+	ATREP3	Helitron	RC	312	short	1439	high	11367509	chromoarm	335	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr1	26207278	26207344	AT1TE85850	.	-	ATHPOGO	Pogo	DNA	66	tiny	25	low	11403308	chromoarm	710	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	26214247	26215463	AT1TE85870	.	-	ATREP10D	Helitron	RC	1216	short	1295	high	11410277	chromoarm	985	no-CHH	no-CHH	.	.	.	.	.
Chr1	26246848	26247316	AT1TE85970	.	-	BRODYAGA1	MuDR	DNA	468	short	251	high	11442878	chromoarm	1179	no-CHH	no-CHH	.	.	.	.	.
Chr1	26253996	26254130	AT1TE85990	.	+	ATLINE1_3A	L1	LINE	134	short	160	medium	11450026	chromoarm	477	no-CHH	no-CHH	.	.	.	.	.
Chr1	26262527	26263210	AT1TE86020	.	+	ATREP1	Helitron	RC	683	short	498	high	11458557	chromoarm	2062	no-CHH	no-CHH	.	.	.	.	.
Chr1	26263210	26263320	AT1TE86025	.	-	META1	Copia	LTR	110	short	138	medium	11459240	chromoarm	2745	no-CHH	no-CHH	.	.	.	.	.
Chr1	26269595	26269668	AT1TE86040	.	-	HELITRONY1B	Helitron	RC	73	tiny	414	high	11465625	chromoarm	777	no-CHH	no-CHH	.	.	.	.	.
Chr1	26293271	26293710	AT1TE86120	.	+	ATDNA2T9C	MuDR	DNA	439	short	242	high	11489301	chromoarm	221	no-CHH	no-CHH	.	.	.	.	.
Chr1	26295856	26296545	AT1TE86125	.	-	ATREP4	Helitron	RC	689	short	832	high	11491886	chromoarm	399	no-CHH	no-CHH	.	.	.	.	.
Chr1	26304495	26304923	AT1TE86150	.	+	BRODYAGA1	MuDR	DNA	428	short	251	high	11500525	chromoarm	4088	no-CHH	no-CHH	.	.	.	.	.
Chr1	26304923	26304985	AT1TE86155	.	+	HELITRONY1D	Helitron	RC	62	tiny	756	high	11500953	chromoarm	4516	no-CHH	no-CHH	.	.	.	.	.
Chr1	26304985	26305011	AT1TE86160	.	-	ATDNA2T9C	MuDR	DNA	26	tiny	242	high	11501015	chromoarm	4578	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	26306789	26306852	AT1TE86165	.	-	VANDAL8	MuDR	DNA	63	tiny	123	medium	11502819	chromoarm	2775	no-CHH	no-CHH	.	.	.	.	.
Chr1	26306852	26306946	AT1TE86170	.	+	ATREP2A	Helitron	RC	94	tiny	116	medium	11502882	chromoarm	2681	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	26306946	26307617	AT1TE86175	.	+	ATREP2A	Helitron	RC	671	short	116	medium	11502976	chromoarm	2010	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	26307617	26307701	AT1TE86180	.	+	ATREP2	Helitron	RC	84	tiny	164	medium	11503647	chromoarm	1926	no-CHH	no-CHH	.	.	.	.	.
Chr1	26332244	26333319	AT1TE86260	.	+	ATREP10D	Helitron	RC	1075	short	1295	high	11528274	chromoarm	168	no-CHH	no-CHH	.	.	.	.	.
Chr1	26333338	26333486	AT1TE86265	.	+	HELITRONY1B	Helitron	RC	148	short	414	high	11529368	chromoarm	908	no-CHH	no-CHH	.	.	.	.	.
Chr1	26345876	26346082	AT1TE86300	.	+	ATLINE1_3A	L1	LINE	206	short	160	medium	11541906	chromoarm	905	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	26346487	26348691	AT1TE86305	.	+	Unassigned	.	Unassigned	2204	medium	.	low	11542517	chromoarm	200	no-CHH	no-CHH	ExpressedAndAnnotated	26348156	26348712	+	transcript_id-"373d3dff-64d0-4947-8dbf-0f98e46d6788|3"
Chr1	26358798	26360000	AT1TE86330	.	+	ATREP10D	Helitron	RC	1202	short	1295	high	11554828	chromoarm	234	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	26360000	26360022	AT1TE86335	.	-	ATREP10D	Helitron	RC	22	tiny	1295	high	11556030	chromoarm	212	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	26360022	26360094	AT1TE86340	.	-	ATREP5	Helitron	RC	72	tiny	624	high	11556052	chromoarm	140	no-CHH	no-CHH	.	.	.	.	.
Chr1	26366602	26371673	AT1TE86360	.	+	ATCOPIA11	Copia	LTR	5071	long	26	low	11562632	chromoarm	1967	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	26371673	26371717	AT1TE86365	.	+	ATCOPIA11	Copia	LTR	44	tiny	26	low	11567703	chromoarm	5652	no-RdDM	no-CHH	.	.	.	.	.
Chr1	26374125	26374207	AT1TE86370	.	+	VANDALNX2	MuDR	DNA	82	tiny	37	low	11570155	chromoarm	3162	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	26374207	26375957	AT1TE86375	.	+	ATDNA2T9A	MuDR	DNA	1750	short	48	low	11570237	chromoarm	1412	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	26375957	26376043	AT1TE86380	.	+	ATREP10D	Helitron	RC	86	tiny	1295	high	11571987	chromoarm	1326	no-CHH	no-CHH	.	.	.	.	.
Chr1	26378340	26378445	AT1TE86385	.	-	ATHPOGON1	Pogo	DNA	105	short	174	medium	11574370	chromoarm	187	no-CHH	no-CHH	.	.	.	.	.
Chr1	26380787	26381167	AT1TE86390	.	-	HELITRON2	Helitron	RC	380	short	194	medium	11576817	chromoarm	65	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	26394243	26394371	AT1TE86430	.	+	ATLINE1A	L1	LINE	128	short	289	high	11590273	chromoarm	95	no-CHH	no-CHH	.	.	.	.	.
Chr1	26397614	26397696	AT1TE86440	.	-	BRODYAGA2	MuDR	DNA	82	tiny	525	high	11593644	chromoarm	49	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr1	26397696	26398521	AT1TE86445	.	-	ATREP15	Helitron	RC	825	short	1003	high	11593726	chromoarm	131	no-CHH	no-CHH	.	.	.	.	.
Chr1	26398521	26398632	AT1TE86450	.	+	ATREP4	Helitron	RC	111	short	832	high	11594551	chromoarm	956	no-CHH	no-CHH	.	.	.	.	.
Chr1	26422833	26422871	AT1TE86530	.	-	ARNOLDY1	MuDR	DNA	38	tiny	237	high	11618863	chromoarm	488	no-CHH	no-CHH	.	.	.	.	.
Chr1	26422871	26423276	AT1TE86535	.	-	ATREP5	Helitron	RC	405	short	624	high	11618901	chromoarm	526	no-CHH	no-CHH	.	.	.	.	.
Chr1	26423276	26423349	AT1TE86540	.	-	ATTIR16T3A	.	DNA	73	tiny	106	medium	11619306	chromoarm	655	no-CHH	no-CHH	.	.	.	.	.
Chr1	26423349	26423776	AT1TE86545	.	-	ATTIR16T3A	.	DNA	427	short	106	medium	11619379	chromoarm	228	no-CHH	no-CHH	.	.	.	.	.
Chr1	26430151	26430326	AT1TE86560	.	-	TAG3N1	HAT	DNA	175	short	97	medium	11626181	chromoarm	289	no-CHH	no-CHH	.	.	.	.	.
Chr1	26436221	26436692	AT1TE86570	.	+	BRODYAGA2	MuDR	DNA	471	short	525	high	11632251	chromoarm	1870	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	26437963	26438636	AT1TE86575	.	-	ATREP4	Helitron	RC	673	short	832	high	11633993	chromoarm	1016	no-CHH	no-CHH	.	.	.	.	.
Chr1	26453453	26453679	AT1TE86620	.	+	ATCOPIA57	Copia	LTR	226	short	48	low	11649483	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	26465318	26465670	AT1TE86660	.	-	ATCOPIA49	Copia	LTR	352	short	34	low	11661348	chromoarm	415	no-CHH	no-CHH	.	.	.	.	.
Chr1	26481878	26482830	AT1TE86710	.	+	ATREP10B	Helitron	RC	952	short	491	high	11677908	chromoarm	645	no-CHH	no-CHH	.	.	.	.	.
Chr1	26484182	26484595	AT1TE86715	.	-	HELITRONY3	Helitron	RC	413	short	1399	high	11680212	chromoarm	901	no-CHH	no-CHH	.	.	.	.	.
Chr1	26494214	26494503	AT1TE86740	.	-	ATMU8	MuDR	DNA	289	short	9	low	11690244	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	26510619	26510664	AT1TE86790	.	-	ATREP1	Helitron	RC	45	tiny	498	high	11706649	chromoarm	1294	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	26510665	26511224	AT1TE86795	.	-	ATREP2	Helitron	RC	560	short	164	medium	11706694	chromoarm	1339	.	.	.	.	.	.	.
Chr1	26511225	26511276	AT1TE86800	.	-	ATREP1	Helitron	RC	51	tiny	498	high	11707255	chromoarm	1726	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	26511276	26511299	AT1TE86805	.	-	ATREP11	Helitron	RC	23	tiny	841	high	11707306	chromoarm	1703	no-CHH	no-CHH	.	.	.	.	.
Chr1	26511729	26511910	AT1TE86810	.	+	TA11	L1	LINE	181	short	157	medium	11707759	chromoarm	1092	no-CHH	no-CHH	.	.	.	.	.
Chr1	26515074	26515250	AT1TE86820	.	-	ATREP3	Helitron	RC	176	short	1439	high	11711104	chromoarm	76	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	26515250	26515637	AT1TE86825	.	+	ATTIRX1B	.	DNA	387	short	44	low	11711280	chromoarm	252	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	26515637	26515687	AT1TE86830	.	+	ATREP3	Helitron	RC	50	tiny	1439	high	11711667	chromoarm	639	no-CHH	no-CHH	.	.	.	.	.
Chr1	26519928	26520001	AT1TE86840	.	+	ATREP9	Helitron	RC	73	tiny	201	high	11715958	chromoarm	4930	no-CHH	no-CHH	.	.	.	.	.
Chr1	26520001	26520890	AT1TE86845	.	+	ATREP11	Helitron	RC	889	short	841	high	11716031	chromoarm	5003	no-CHH	no-CHH	.	.	.	.	.
Chr1	26551491	26552205	AT1TE86940	.	+	ATREP13	Helitron	RC	714	short	106	medium	11747521	chromoarm	370	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	26581282	26581442	AT1TE87040	.	+	VANDAL8	MuDR	DNA	160	short	123	medium	11777312	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	26582420	26582531	AT1TE87045	.	-	ATHATN5	HAT	DNA	111	short	42	low	11778450	chromoarm	275	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	26602036	26602649	AT1TE87100	.	-	HELITRONY1D	Helitron	RC	613	short	756	high	11798066	chromoarm	2148	no-CHH	no-CHH	.	.	.	.	.
Chr1	26603839	26604166	AT1TE87105	.	-	ATDNA2T9C	MuDR	DNA	327	short	242	high	11799869	chromoarm	727	no-CHH	no-RdDM	.	.	.	.	.
Chr1	26616836	26617456	AT1TE87140	.	+	HELITRONY2	Helitron	RC	620	short	198	medium	11812866	chromoarm	946	no-CHH	no-CHH	.	.	.	.	.
Chr1	26631273	26631374	AT1TE87190	.	+	ARNOLD2	MuDR	DNA	101	short	68	medium	11827303	chromoarm	496	no-CHH	no-CHH	.	.	.	.	.
Chr1	26648649	26649121	AT1TE87250	.	+	ATREP5	Helitron	RC	472	short	624	high	11844679	chromoarm	108	no-CHH	no-CHH	.	.	.	.	.
Chr1	26650760	26650921	AT1TE87255	.	-	RathE1_cons	.	RathE1_cons	161	short	213	high	11846790	chromoarm	1177	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	26673233	26673550	AT1TE87320	.	+	TNAT1A	.	DNA	317	short	162	medium	11869263	chromoarm	67	no-CHH	no-CHH	.	.	.	.	.
Chr1	26676911	26678206	AT1TE87330	.	+	ATREP3	Helitron	RC	1295	short	1439	high	11872941	chromoarm	1224	no-CHH	no-CHH	.	.	.	.	.
Chr1	26681270	26681511	AT1TE87340	.	+	VANDAL17	MuDR	DNA	241	short	178	medium	11877300	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	26683375	26683825	AT1TE87345	.	-	HELITRON4	Helitron	RC	450	short	199	medium	11879405	chromoarm	228	no-CHH	no-CHH	.	.	.	.	.
Chr1	26691302	26691335	AT1TE87360	.	-	ATREP15	Helitron	RC	33	tiny	1003	high	11887332	chromoarm	117	no-CHH	no-CHH	.	.	.	.	.
Chr1	26691335	26691410	AT1TE87365	.	-	ATREP15	Helitron	RC	75	tiny	1003	high	11887365	chromoarm	150	no-CHH	no-CHH	.	.	.	.	.
Chr1	26691410	26692514	AT1TE87370	.	+	HELITRONY1E	Helitron	RC	1104	short	447	high	11887440	chromoarm	225	no-CHH	no-CHH	.	.	.	.	.
Chr1	26693556	26693952	AT1TE87375	.	+	HELITRONY3	Helitron	RC	396	short	1399	high	11889586	chromoarm	1509	no-CHH	no-CHH	.	.	.	.	.
Chr1	26699596	26700297	AT1TE87385	.	-	ATREP10B	Helitron	RC	701	short	491	high	11895626	chromoarm	426	no-CHH	no-CHH	.	.	.	.	.
Chr1	26700297	26700363	AT1TE87390	.	-	HELITRONY3	Helitron	RC	66	tiny	1399	high	11896327	chromoarm	360	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	26719633	26720140	AT1TE87450	.	-	HELITRON4	Helitron	RC	507	short	199	medium	11915663	chromoarm	641	no-CHH	no-CHH	.	.	.	.	.
Chr1	26720322	26720429	AT1TE87455	.	-	BRODYAGA1	MuDR	DNA	107	short	251	high	11916352	chromoarm	590	no-CHH	no-CHH	.	.	.	.	.
Chr1	26720429	26720785	AT1TE87460	.	+	ATREP5	Helitron	RC	356	short	624	high	11916459	chromoarm	234	no-CHH	no-CHH	.	.	.	.	.
Chr1	26728036	26728149	AT1TE87480	.	+	ARNOLD1	MuDR	DNA	113	short	39	low	11924066	chromoarm	20	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	26735169	26735545	AT1TE87500	.	+	BRODYAGA1A	MuDR	DNA	376	short	586	high	11931199	chromoarm	529	no-CHH	no-CHH	.	.	.	.	.
Chr1	26747120	26747238	AT1TE87540	.	-	TSCL	.	LINE?	118	short	81	medium	11943150	chromoarm	1249	no-CHH	no-CHH	.	.	.	.	.
Chr1	26749583	26749870	AT1TE87545	.	-	ATREP19	.	DNA	287	short	189	medium	11945613	chromoarm	330	no-CHH	no-CHH	.	.	.	.	.
Chr1	26771215	26771572	AT1TE87610	.	+	ATHATN4	HAT	DNA	357	short	56	medium	11967245	chromoarm	1104	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	26779007	26781652	AT1TE87630	.	-	HELITRONY1D	Helitron	RC	2645	medium	756	high	11975037	chromoarm	1186	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	26781652	26781887	AT1TE87635	.	-	ATREP5	Helitron	RC	235	short	624	high	11977682	chromoarm	951	no-CHH	no-CHH	.	.	.	.	.
Chr1	26781887	26781921	AT1TE87640	.	-	ATREP1	Helitron	RC	34	tiny	498	high	11977917	chromoarm	917	no-CHH	no-CHH	.	.	.	.	.
Chr1	26781921	26782059	AT1TE87645	.	+	ATREP10D	Helitron	RC	138	short	1295	high	11977951	chromoarm	779	no-CHH	no-CHH	.	.	.	.	.
Chr1	26818088	26818218	AT1TE87760	.	-	LIMPET1	MuDR	DNA	130	short	116	medium	12014118	chromoarm	25	no-CHH	no-CHH	.	.	.	.	.
Chr1	26852148	26852395	AT1TE87870	.	+	ATTIRX1C	.	DNA	247	short	39	low	12048178	chromoarm	164	no-CHH	no-CHH	.	.	.	.	.
Chr1	26880146	26880168	AT1TE87960	.	-	ATREP15	Helitron	RC	22	tiny	1003	high	12076176	chromoarm	302	no-CHH	no-CHH	.	.	.	.	.
Chr1	26880168	26880722	AT1TE87965	.	-	ATREP11	Helitron	RC	554	short	841	high	12076198	chromoarm	324	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	26880722	26881419	AT1TE87970	.	+	ATREP2	Helitron	RC	697	short	164	medium	12076752	chromoarm	878	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	26881419	26881512	AT1TE87975	.	-	ATREP7	Helitron	RC	93	tiny	164	medium	12077449	chromoarm	972	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	26881781	26882453	AT1TE87980	.	-	ATREP3	Helitron	RC	672	short	1439	high	12077811	chromoarm	31	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	26882453	26882522	AT1TE87985	.	-	ATREP10B	Helitron	RC	69	tiny	491	high	12078483	chromoarm	0	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr1	26892362	26892698	AT1TE88010	.	+	VANDAL17	MuDR	DNA	336	short	178	medium	12088392	chromoarm	0	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	26896378	26896629	AT1TE88020	.	+	ATHILA7	Gypsy	LTR	251	short	134	medium	12092408	chromoarm	605	no-CHH	no-CHH	.	.	.	.	.
Chr1	26940417	26940879	AT1TE88160	.	-	ATMU6N1	MuDR	DNA	462	short	39	low	12136447	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	26943120	26943622	AT1TE88165	.	-	ATREP3	Helitron	RC	502	short	1439	high	12139150	chromoarm	814	no-CHH	no-CHH	.	.	.	.	.
Chr1	26961933	26962218	AT1TE88220	.	+	VANDALNX2	MuDR	DNA	285	short	37	low	12157963	chromoarm	2140	no-CHH	no-CHH	.	.	.	.	.
Chr1	26962996	26963155	AT1TE88225	.	-	HELITRONY1D	Helitron	RC	159	short	756	high	12159026	chromoarm	1203	no-CHH	no-CHH	.	.	.	.	.
Chr1	26994133	26994627	AT1TE88320	.	-	ATTIR16T3A	.	DNA	494	short	106	medium	12190163	chromoarm	644	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	26994629	26994857	AT1TE88325	.	+	ATREP10D	Helitron	RC	228	short	1295	high	12190659	chromoarm	548	no-CHH	no-CHH	.	.	.	.	.
Chr1	27035223	27036301	AT1TE88450	.	-	ATREP4	Helitron	RC	1078	short	832	high	12231253	chromoarm	328	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	27037854	27038984	AT1TE88455	.	-	ATREP4	Helitron	RC	1130	short	832	high	12233884	chromoarm	2959	no-CHH	no-CHH	.	.	.	.	.
Chr1	27038514	27038900	AT1TE88460	.	+	BRODYAGA1A	MuDR	DNA	386	short	586	high	12234544	chromoarm	3619	no-CHH	no-CHH	.	.	.	.	.
Chr1	27048891	27048912	AT1TE88490	.	-	ATREP4	Helitron	RC	21	tiny	832	high	12244921	chromoarm	5421	no-CHH	no-CHH	.	.	.	.	.
Chr1	27048912	27049368	AT1TE88495	.	+	BRODYAGA2	MuDR	DNA	456	short	525	high	12244942	chromoarm	4965	no-CHH	no-CHH	.	.	.	.	.
Chr1	27049626	27049812	AT1TE88500	.	-	HELITRONY1D	Helitron	RC	186	short	756	high	12245656	chromoarm	4521	no-CHH	no-CHH	.	.	.	.	.
Chr1	27049812	27049898	AT1TE88505	.	+	VANDAL6	MuDR	DNA	86	tiny	89	medium	12245842	chromoarm	4435	no-CHH	no-CHH	.	.	.	.	.
Chr1	27049898	27050387	AT1TE88510	.	-	ATDNA2T9C	MuDR	DNA	489	short	242	high	12245928	chromoarm	3946	no-CHH	no-CHH	.	.	.	.	.
Chr1	27057352	27057421	AT1TE88530	.	+	ATTIRX1A	.	DNA	69	tiny	63	medium	12253382	chromoarm	1070	no-CHH	no-CHH	.	.	.	.	.
Chr1	27059870	27060396	AT1TE88535	.	+	HELITRONY3	Helitron	RC	526	short	1399	high	12255900	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	27061199	27061457	AT1TE88540	.	+	HELITRONY1D	Helitron	RC	258	short	756	high	12257229	chromoarm	296	no-CHH	no-CHH	.	.	.	.	.
Chr1	27081682	27082175	AT1TE88610	.	-	ATREP15	Helitron	RC	493	short	1003	high	12277712	chromoarm	109	no-CHH	no-CHH	.	.	.	.	.
Chr1	27088403	27088574	AT1TE88630	.	-	ATREP9	Helitron	RC	171	short	201	high	12284433	chromoarm	240	no-CHH	no-CHH	.	.	.	.	.
Chr1	27088574	27089569	AT1TE88635	.	+	ATREP15	Helitron	RC	995	short	1003	high	12284604	chromoarm	411	no-CHH	no-CHH	.	.	.	.	.
Chr1	27089569	27089911	AT1TE88640	.	+	ATREP10A	Helitron	RC	342	short	279	high	12285599	chromoarm	1406	no-CHH	no-CHH	.	.	.	.	.
Chr1	27089911	27089960	AT1TE88645	.	+	ATREP9	Helitron	RC	49	tiny	201	high	12285941	chromoarm	1748	no-CHH	no-CHH	.	.	.	.	.
Chr1	27102262	27102443	AT1TE88680	.	+	ATTIRX1A	.	DNA	181	short	63	medium	12298292	chromoarm	165	no-CHH	no-CHH	.	.	.	.	.
Chr1	27117490	27118195	AT1TE88730	.	-	TAG3N1	HAT	DNA	705	short	97	medium	12313520	chromoarm	262	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	27141112	27141471	AT1TE88810	.	+	ATREP3	Helitron	RC	359	short	1439	high	12337142	chromoarm	405	no-CHH	no-CHH	.	.	.	.	.
Chr1	27147361	27148308	AT1TE88820	.	-	HELITRON2	Helitron	RC	947	short	194	medium	12343391	chromoarm	249	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	27148923	27149184	AT1TE88825	.	-	ATENSPM1A	En-Spm	DNA	261	short	77	medium	12344953	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	27175726	27175761	AT1TE88910	.	-	ATREP15	Helitron	RC	35	tiny	1003	high	12371756	chromoarm	4304	no-CHH	no-CHH	.	.	.	.	.
Chr1	27175761	27175785	AT1TE88915	.	-	ATREP1	Helitron	RC	24	tiny	498	high	12371791	chromoarm	4280	no-CHH	no-CHH	.	.	.	.	.
Chr1	27175785	27176168	AT1TE88920	.	-	BRODYAGA2	MuDR	DNA	383	short	525	high	12371815	chromoarm	3897	no-CHH	no-CHH	.	.	.	.	.
Chr1	27176168	27177572	AT1TE88925	.	+	HELITRONY3	Helitron	RC	1404	short	1399	high	12372198	chromoarm	2493	no-CHH	no-CHH	.	.	.	.	.
Chr1	27177572	27177672	AT1TE88930	.	+	ATREP10D	Helitron	RC	100	short	1295	high	12373602	chromoarm	2393	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	27178398	27179114	AT1TE88935	.	+	ATREP10B	Helitron	RC	716	short	491	high	12374428	chromoarm	951	no-CHH	no-CHH	.	.	.	.	.
Chr1	27186174	27186754	AT1TE88950	.	-	ATREP3	Helitron	RC	580	short	1439	high	12382204	chromoarm	545	no-CHH	no-CHH	.	.	.	.	.
Chr1	27186754	27187321	AT1TE88955	.	-	ATHPOGON1	Pogo	DNA	567	short	174	medium	12382784	chromoarm	965	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	27187321	27187351	AT1TE88960	.	-	HELITRONY3	Helitron	RC	30	tiny	1399	high	12383351	chromoarm	935	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	27187351	27187807	AT1TE88965	.	-	HELITRONY1D	Helitron	RC	456	short	756	high	12383381	chromoarm	479	no-CHH	no-CHH	.	.	.	.	.
Chr1	27216701	27216884	AT1TE89060	.	+	ATCOPIA66	Copia	LTR	183	short	20	low	12412731	chromoarm	202	no-CHH	no-CHH	.	.	.	.	.
Chr1	27221232	27221323	AT1TE89070	.	-	HELITRONY1D	Helitron	RC	91	tiny	756	high	12417262	chromoarm	266	no-CHH	no-CHH	.	.	.	.	.
Chr1	27222089	27222955	AT1TE89075	.	+	ATREP11	Helitron	RC	866	short	841	high	12418119	chromoarm	1123	no-CHH	no-CHH	.	.	.	.	.
Chr1	27240240	27240713	AT1TE89130	.	+	ATREP11	Helitron	RC	473	short	841	high	12436270	chromoarm	293	no-CHH	no-CHH	.	.	.	.	.
Chr1	27240714	27241286	AT1TE89135	.	+	ATREP2	Helitron	RC	573	short	164	medium	12436743	chromoarm	617	.	.	.	.	.	.	.
Chr1	27241286	27241658	AT1TE89140	.	+	ATREP3	Helitron	RC	372	short	1439	high	12437316	chromoarm	245	no-CHH	no-CHH	.	.	.	.	.
Chr1	27266065	27266380	AT1TE89220	.	-	BRODYAGA1A	MuDR	DNA	315	short	586	high	12462095	chromoarm	556	no-CHH	no-CHH	.	.	.	.	.
Chr1	27282095	27283517	AT1TE89270	.	+	ATREP3	Helitron	RC	1422	short	1439	high	12478125	chromoarm	241	no-CHH	no-CHH	.	.	.	.	.
Chr1	27283517	27283673	AT1TE89275	.	+	ATREP4	Helitron	RC	156	short	832	high	12479547	chromoarm	85	no-CHH	no-CHH	.	.	.	.	.
Chr1	27283673	27283729	AT1TE89280	.	-	ATREP10D	Helitron	RC	56	tiny	1295	high	12479703	chromoarm	29	no-CHH	no-CHH	.	.	.	.	.
Chr1	27307032	27307927	AT1TE89360	.	-	ATREP4	Helitron	RC	895	short	832	high	12503062	chromoarm	683	no-CHH	no-CHH	.	.	.	.	.
Chr1	27389377	27389768	AT1TE89630	.	+	BRODYAGA1A	MuDR	DNA	391	short	586	high	12585407	chromoarm	1103	no-CHH	no-CHH	.	.	.	.	.
Chr1	27400267	27400460	AT1TE89660	.	-	VANDAL17	MuDR	DNA	193	short	178	medium	12596297	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	27428714	27429293	AT1TE89750	.	-	HELITRONY1D	Helitron	RC	579	short	756	high	12624744	chromoarm	653	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	27434518	27434581	AT1TE89760	.	-	TA11	L1	LINE	63	tiny	157	medium	12630548	chromoarm	986	no-CHH	DCL3-RdDM	.	.	.	.	.
Chr1	27434581	27435206	AT1TE89765	.	-	TA11	L1	LINE	625	short	157	medium	12630611	chromoarm	427	no-CHH	no-CHH	.	.	.	.	.
Chr1	27438788	27438989	AT1TE89775	.	-	TA11	L1	LINE	201	short	157	medium	12634818	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	27440620	27440798	AT1TE89780	.	+	RathE1_cons	.	RathE1_cons	178	short	213	high	12636650	chromoarm	473	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	27498278	27498344	AT1TE89970	.	-	ATREP4	Helitron	RC	66	tiny	832	high	12694308	chromoarm	393	no-CHH	no-CHH	.	.	.	.	.
Chr1	27498344	27498793	AT1TE89975	.	-	ATTIR16T3A	.	DNA	449	short	106	medium	12694374	chromoarm	459	no-CHH	no-CHH	.	.	.	.	.
Chr1	27498795	27498935	AT1TE89980	.	-	ATREP1	Helitron	RC	140	short	498	high	12694825	chromoarm	531	no-CHH	no-CHH	.	.	.	.	.
Chr1	27514958	27514981	AT1TE90030	.	+	ATLINE1_2	L1	LINE	23	tiny	41	low	12710988	chromoarm	175	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	27526710	27528093	AT1TE90070	.	+	ATREP3	Helitron	RC	1383	short	1439	high	12722740	chromoarm	137	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	27531283	27531434	AT1TE90080	.	-	HELITRONY1D	Helitron	RC	151	short	756	high	12727313	chromoarm	830	no-CHH	no-CHH	.	.	.	.	.
Chr1	27531434	27531540	AT1TE90085	.	+	VANDAL17	MuDR	DNA	106	short	178	medium	12727464	chromoarm	981	no-CHH	no-CHH	.	.	.	.	.
Chr1	27531540	27532208	AT1TE90090	.	-	VANDAL17	MuDR	DNA	668	short	178	medium	12727570	chromoarm	1087	no-CHH	no-CHH	.	.	.	.	.
Chr1	27544413	27544628	AT1TE90130	.	-	ATENSPM1	En-Spm	DNA	215	short	30	low	12740443	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	27556156	27556325	AT1TE90170	.	-	ATLINE1_3A	L1	LINE	169	short	160	medium	12752186	chromoarm	71	no-CHH	no-CHH	.	.	.	.	.
Chr1	27561568	27561635	AT1TE90180	.	-	ATENSPM10	En-Spm	DNA	67	tiny	81	medium	12757598	chromoarm	0	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	27569671	27569729	AT1TE90210	.	-	ATREP5	Helitron	RC	58	tiny	624	high	12765701	chromoarm	20	no-CHH	no-CHH	.	.	.	.	.
Chr1	27569729	27569874	AT1TE90215	.	-	ATREP4	Helitron	RC	145	short	832	high	12765759	chromoarm	78	no-CHH	no-CHH	.	.	.	.	.
Chr1	27569874	27570011	AT1TE90220	.	+	ATREP15	Helitron	RC	137	short	1003	high	12765904	chromoarm	223	no-CHH	no-CHH	.	.	.	.	.
Chr1	27570011	27571314	AT1TE90225	.	+	ATREP10D	Helitron	RC	1303	short	1295	high	12766041	chromoarm	360	no-CHH	no-CHH	.	.	.	.	.
Chr1	27572958	27573057	AT1TE90230	.	+	ATENSPM2	En-Spm	DNA	99	tiny	114	medium	12768988	chromoarm	78	no-CHH	no-CHH	.	.	.	.	.
Chr1	27582770	27583457	AT1TE90260	.	-	ATREP11	Helitron	RC	687	short	841	high	12778800	chromoarm	950	no-CHH	no-CHH	.	.	.	.	.
Chr1	27595145	27595529	AT1TE90300	.	+	ATREP5	Helitron	RC	384	short	624	high	12791175	chromoarm	997	no-CHH	no-CHH	.	.	.	.	.
Chr1	27597411	27597674	AT1TE90305	.	+	RP1_AT	.	DNA	263	short	87	medium	12793441	chromoarm	431	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	27603351	27603513	AT1TE90315	.	-	ATIS112A	Harbinger	DNA	162	short	173	medium	12799381	chromoarm	313	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr1	27603732	27603865	AT1TE90320	.	+	ARNOLD2	MuDR	DNA	133	short	68	medium	12799762	chromoarm	230	no-CHH	no-CHH	.	.	.	.	.
Chr1	27612749	27613258	AT1TE90350	.	-	ATLINE1A	L1	LINE	509	short	289	high	12808779	chromoarm	567	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	27666329	27666561	AT1TE90520	.	+	ATCOPIA11	Copia	LTR	232	short	26	low	12862359	chromoarm	2662	no-CHH	no-CHH	.	.	.	.	.
Chr1	27674199	27674223	AT1TE90550	.	+	BRODYAGA1	MuDR	DNA	24	tiny	251	high	12870229	chromoarm	136	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	27675432	27676136	AT1TE90555	.	+	BRODYAGA2	MuDR	DNA	704	short	525	high	12871462	chromoarm	124	no-CHH	no-CHH	.	.	.	.	.
Chr1	27676136	27676206	AT1TE90560	.	+	VANDAL17	MuDR	DNA	70	tiny	178	medium	12872166	chromoarm	54	no-CHH	no-CHH	.	.	.	.	.
Chr1	27676709	27676744	AT1TE90565	.	-	ATREP4	Helitron	RC	35	tiny	832	high	12872739	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	27676745	27677419	AT1TE90570	.	-	ATREP4	Helitron	RC	675	short	832	high	12872774	chromoarm	0	.	.	.	.	.	.	.
Chr1	27677419	27677549	AT1TE90575	.	+	ATREP1	Helitron	RC	130	short	498	high	12873449	chromoarm	667	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	27677721	27678241	AT1TE90580	.	-	ATDNA2T9C	MuDR	DNA	520	short	242	high	12873751	chromoarm	135	no-CHH	no-CHH	.	.	.	.	.
Chr1	27708530	27708913	AT1TE90680	.	-	BRODYAGA1	MuDR	DNA	383	short	251	high	12904560	chromoarm	1113	no-CHH	no-CHH	.	.	.	.	.
Chr1	27733203	27733527	AT1TE90760	.	+	ATHILA7	Gypsy	LTR	324	short	134	medium	12929233	chromoarm	840	no-CHH	no-CHH	.	.	.	.	.
Chr1	27748074	27748682	AT1TE90810	.	-	VANDAL17	MuDR	DNA	608	short	178	medium	12944104	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	27751422	27751785	AT1TE90815	.	+	BRODYAGA1A	MuDR	DNA	363	short	586	high	12947452	chromoarm	720	no-CHH	no-CHH	.	.	.	.	.
Chr1	27758286	27758423	AT1TE90830	.	-	ATHILA	Gypsy	LTR	137	short	198	medium	12954316	chromoarm	1128	no-CHH	no-CHH	.	.	.	.	.
Chr1	27805427	27805534	AT1TE90980	.	+	ARNOLD2	MuDR	DNA	107	short	68	medium	13001457	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	27832898	27833238	AT1TE91070	.	-	BRODYAGA1A	MuDR	DNA	340	short	586	high	13028928	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	27854320	27854386	AT1TE91140	.	+	ATREP15	Helitron	RC	66	tiny	1003	high	13050350	chromoarm	1459	no-CHH	no-CHH	.	.	.	.	.
Chr1	27854386	27854425	AT1TE91145	.	+	AT9TSD1	MuDR	DNA	39	tiny	55	medium	13050416	chromoarm	1525	no-CHH	no-CHH	.	.	.	.	.
Chr1	27854425	27855573	AT1TE91150	.	+	HELITRONY1D	Helitron	RC	1148	short	756	high	13050455	chromoarm	398	no-CHH	no-CHH	.	.	.	.	.
Chr1	27855573	27855619	AT1TE91155	.	+	ATREP15	Helitron	RC	46	tiny	1003	high	13051603	chromoarm	352	no-CHH	no-CHH	.	.	.	.	.
Chr1	27859647	27860967	AT1TE91165	.	+	HELITRONY3	Helitron	RC	1320	short	1399	high	13055677	chromoarm	1071	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	27878540	27878610	AT1TE91220	.	-	ATCOPIA35	Copia	LTR	70	tiny	22	low	13074570	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	27921017	27921085	AT1TE91360	.	-	ATENSPM9	En-Spm	DNA	68	tiny	97	medium	13117047	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	27921085	27921593	AT1TE91365	.	+	ATMU10	MuDR	DNA	508	short	87	medium	13117115	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	27932605	27933669	AT1TE91400	.	+	TAG2	HAT	DNA	1064	short	86	medium	13128635	chromoarm	0	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	27946060	27946565	AT1TE91440	.	+	ATMU6N1	MuDR	DNA	505	short	39	low	13142090	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	27952710	27953207	AT1TE91460	.	+	HELITRONY1D	Helitron	RC	497	short	756	high	13148740	chromoarm	1091	no-CHH	no-CHH	.	.	.	.	.
Chr1	27972686	27972767	AT1TE91520	.	-	BRODYAGA2	MuDR	DNA	81	tiny	525	high	13168716	chromoarm	2641	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	27999669	27999744	AT1TE91610	.	+	RathE2_cons	.	RathE2_cons	75	tiny	74	medium	13195699	chromoarm	1001	no-CHH	no-CHH	.	.	.	.	.
Chr1	28035176	28035469	AT1TE91730	.	-	BRODYAGA1	MuDR	DNA	293	short	251	high	13231206	chromoarm	517	no-CHH	no-CHH	.	.	.	.	.
Chr1	28037269	28037512	AT1TE91735	.	+	HELITRONY3	Helitron	RC	243	short	1399	high	13233299	chromoarm	2610	no-CHH	no-CHH	.	.	.	.	.
Chr1	28037512	28038113	AT1TE91740	.	+	ATREP3	Helitron	RC	601	short	1439	high	13233542	chromoarm	2853	no-CHH	no-CHH	.	.	.	.	.
Chr1	28038113	28038233	AT1TE91745	.	+	HELITRONY3	Helitron	RC	120	short	1399	high	13234143	chromoarm	3259	no-CHH	no-CHH	.	.	.	.	.
Chr1	28038233	28039312	AT1TE91750	.	+	ATREP10B	Helitron	RC	1079	short	491	high	13234263	chromoarm	2180	no-CHH	no-CHH	.	.	.	.	.
Chr1	28051401	28051657	AT1TE91790	.	+	RP1_AT	.	DNA	256	short	87	medium	13247431	chromoarm	1720	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	28051658	28051690	AT1TE91795	.	+	RP1_AT	.	DNA	33	tiny	87	medium	13247687	chromoarm	1687	.	.	.	.	.	.	.
Chr1	28057003	28057257	AT1TE91805	.	+	HELITRONY1B	Helitron	RC	254	short	414	high	13253033	chromoarm	2270	no-CHH	no-CHH	.	.	.	.	.
Chr1	28057257	28058256	AT1TE91810	.	+	ATREP5	Helitron	RC	999	short	624	high	13253287	chromoarm	1271	no-CHH	no-CHH	.	.	.	.	.
Chr1	28106096	28106423	AT1TE91970	.	-	ATHILA7	Gypsy	LTR	327	short	134	medium	13302126	chromoarm	1103	no-CHH	no-CHH	.	.	.	.	.
Chr1	28160500	28160593	AT1TE92150	.	-	ATREP11	Helitron	RC	93	tiny	841	high	13356530	chromoarm	250	no-CHH	no-CHH	.	.	.	.	.
Chr1	28160593	28160616	AT1TE92155	.	-	ATREP3	Helitron	RC	23	tiny	1439	high	13356623	chromoarm	343	no-CHH	no-CHH	.	.	.	.	.
Chr1	28160616	28161035	AT1TE92160	.	+	ATREP3	Helitron	RC	419	short	1439	high	13356646	chromoarm	366	no-CHH	no-CHH	.	.	.	.	.
Chr1	28161035	28163376	AT1TE92165	.	+	ATREP3	Helitron	RC	2341	medium	1439	high	13357065	chromoarm	273	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	28163734	28163858	AT1TE92170	.	+	ATENSPM1A	En-Spm	DNA	124	short	77	medium	13359764	chromoarm	0	no-CHH	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	28183375	28183553	AT1TE92230	.	+	ATDNAI27T9C	MuDR	DNA	178	short	108	medium	13379405	chromoarm	90	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	28188832	28189131	AT1TE92240	.	+	DT1	Mariner	DNA	299	short	123	medium	13384862	chromoarm	0	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	28213435	28213540	AT1TE92320	.	+	HELITRONY3A	Helitron	RC	105	short	49	low	13409465	chromoarm	864	no-CHH	no-CHH	.	.	.	.	.
Chr1	28240634	28241055	AT1TE92410	.	+	ATREP19	.	DNA	421	short	189	medium	13436664	chromoarm	520	no-CHH	no-CHH	.	.	.	.	.
Chr1	28280131	28281255	AT1TE92540	.	-	ATREP3	Helitron	RC	1124	short	1439	high	13476161	chromoarm	333	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	28310386	28310696	AT1TE92640	.	+	ATREP10D	Helitron	RC	310	short	1295	high	13506416	chromoarm	869	no-CHH	no-CHH	.	.	.	.	.
Chr1	28310696	28310716	AT1TE92645	.	+	ATREP4	Helitron	RC	20	tiny	832	high	13506726	chromoarm	1179	no-CHH	no-CHH	.	.	.	.	.
Chr1	28310716	28311272	AT1TE92650	.	-	ATREP6	Helitron	RC	556	short	181	medium	13506746	chromoarm	1199	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	28311272	28312504	AT1TE92655	.	-	ATREP7	Helitron	RC	1232	short	164	medium	13507302	chromoarm	1118	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	28312504	28312633	AT1TE92660	.	-	ATREP7	Helitron	RC	129	short	164	medium	13508534	chromoarm	989	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	28312634	28312698	AT1TE92665	.	-	ATREP3	Helitron	RC	65	tiny	1439	high	13508663	chromoarm	924	.	.	.	.	.	.	.
Chr1	28324764	28325192	AT1TE92700	.	+	BRODYAGA1A	MuDR	DNA	428	short	586	high	13520794	chromoarm	2793	no-CHH	no-CHH	.	.	.	.	.
Chr1	28325192	28325479	AT1TE92705	.	-	ATREP10B	Helitron	RC	287	short	491	high	13521222	chromoarm	2506	no-CHH	no-CHH	.	.	.	.	.
Chr1	28332931	28332971	AT1TE92720	.	+	BRODYAGA2	MuDR	DNA	40	tiny	525	high	13528961	chromoarm	1631	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	28332971	28334063	AT1TE92725	.	-	ARNOLDY2	MuDR	DNA	1092	short	288	high	13529001	chromoarm	1671	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	28342075	28342819	AT1TE92750	.	+	HELITRONY1D	Helitron	RC	744	short	756	high	13538105	chromoarm	1984	no-CHH	no-CHH	.	.	.	.	.
Chr1	28362531	28363565	AT1TE92810	.	-	ATREP4	Helitron	RC	1034	short	832	high	13558561	chromoarm	716	no-CHH	no-CHH	.	.	.	.	.
Chr1	28369488	28369772	AT1TE92820	.	+	VANDAL17	MuDR	DNA	284	short	178	medium	13565518	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	28382377	28382819	AT1TE92860	.	-	ARNOLD2	MuDR	DNA	442	short	68	medium	13578407	chromoarm	430	no-CHH	no-CHH	.	.	.	.	.
Chr1	28392043	28392687	AT1TE92890	.	+	ATREP10B	Helitron	RC	644	short	491	high	13588073	chromoarm	582	no-CHH	no-CHH	.	.	.	.	.
Chr1	28397479	28397666	AT1TE92900	.	+	VANDAL22	MuDR	DNA	187	short	48	low	13593509	chromoarm	885	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	28398200	28399052	AT1TE92905	.	-	ATREP10B	Helitron	RC	852	short	491	high	13594230	chromoarm	1606	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	28420783	28421844	AT1TE92970	.	+	META1	Copia	LTR	1062	short	138	medium	13616812	chromoarm	428	.	.	LowExpressed	.	.	.	.
Chr1	28504713	28505737	AT1TE93240	.	+	HELITRONY3	Helitron	RC	1024	short	1399	high	13700743	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	28507061	28507349	AT1TE93245	.	-	ATTIRTA1	Tc1	DNA	288	short	95	medium	13703091	chromoarm	38	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	28515034	28515061	AT1TE93270	.	-	ATHAT2	HAT	DNA	27	tiny	19	low	13711064	chromoarm	990	no-CHH	no-CHH	.	.	.	.	.
Chr1	28515061	28516118	AT1TE93275	.	+	HELITRON1	Helitron	RC	1057	short	130	medium	13711091	chromoarm	596	no-CHH	no-RdDM	LowExpressed	.	.	.	.
Chr1	28520026	28520136	AT1TE93285	.	-	HELITRONY3	Helitron	RC	110	short	1399	high	13716056	chromoarm	205	no-CHH	no-CHH	.	.	.	.	.
Chr1	28520136	28521012	AT1TE93290	.	+	ATREP15	Helitron	RC	876	short	1003	high	13716166	chromoarm	315	PolIV-RdDM	no-CHH	ExpressedAndAnnotated	28521959	28520899	-	transcript_id-"d87ec6d9-be5a-4e9f-9f53-b681f2bc1c87|3"
Chr1	28521012	28521680	AT1TE93295	.	+	ATREP3	Helitron	RC	668	short	1439	high	13717042	chromoarm	1191	no-CHH	no-CHH	ExpressedAndAnnotated	28521959	28520899	-	transcript_id-"d87ec6d9-be5a-4e9f-9f53-b681f2bc1c87|3"
Chr1	28522006	28522718	AT1TE93300	.	-	ATREP10A	Helitron	RC	712	short	279	high	13718036	chromoarm	217	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	28522718	28522749	AT1TE93305	.	+	ATHATN2	HAT	DNA	31	tiny	46	low	13718748	chromoarm	186	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	28526826	28526860	AT1TE93315	.	-	ATMU6N1	MuDR	DNA	34	tiny	39	low	13722856	chromoarm	108	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	28526860	28527671	AT1TE93320	.	+	ATMU6	MuDR	DNA	811	short	26	low	13722890	chromoarm	142	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	28527673	28527752	AT1TE93325	.	+	ARNOLD1	MuDR	DNA	80	tiny	39	low	13723702	chromoarm	752	.	.	.	.	.	.	.
Chr1	28551734	28551780	AT1TE93400	.	+	ATREP15	Helitron	RC	46	tiny	1003	high	13747764	chromoarm	63	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	28551780	28552561	AT1TE93405	.	+	HELITRONY3	Helitron	RC	781	short	1399	high	13747810	chromoarm	109	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	28552561	28552659	AT1TE93410	.	+	ATREP10D	Helitron	RC	98	tiny	1295	high	13748591	chromoarm	890	no-CHH	no-CHH	.	.	.	.	.
Chr1	28557572	28558097	AT1TE93420	.	+	ATREP4	Helitron	RC	525	short	832	high	13753602	chromoarm	107	no-CHH	no-CHH	.	.	.	.	.
Chr1	28581241	28581301	AT1TE93500	.	-	ATREP15	Helitron	RC	60	tiny	1003	high	13777271	chromoarm	221	no-CHH	no-CHH	.	.	.	.	.
Chr1	28581301	28581356	AT1TE93505	.	+	BRODYAGA1A	MuDR	DNA	55	tiny	586	high	13777331	chromoarm	281	no-CHH	no-CHH	.	.	.	.	.
Chr1	28581356	28582297	AT1TE93510	.	+	ATREP15	Helitron	RC	941	short	1003	high	13777386	chromoarm	336	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	28582297	28582442	AT1TE93515	.	-	ATREP4	Helitron	RC	145	short	832	high	13778327	chromoarm	1277	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	28582442	28582669	AT1TE93520	.	+	ATREP10D	Helitron	RC	227	short	1295	high	13778472	chromoarm	1422	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr1	28684071	28684536	AT1TE93850	.	-	VANDAL8	MuDR	DNA	465	short	123	medium	13880101	chromoarm	81	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	28703054	28703305	AT1TE93910	.	+	ATENSPM5	En-Spm	DNA	251	short	111	medium	13899084	chromoarm	2226	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	28703305	28704766	AT1TE93915	.	+	ATREP4	Helitron	RC	1461	short	832	high	13899335	chromoarm	765	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	28704766	28704848	AT1TE93920	.	-	HELITRONY3	Helitron	RC	82	tiny	1399	high	13900796	chromoarm	683	no-CHH	no-CHH	.	.	.	.	.
Chr1	28749936	28750178	AT1TE94070	.	-	BRODYAGA1	MuDR	DNA	242	short	251	high	13945966	chromoarm	870	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	28785404	28786355	AT1TE94190	.	-	ATREP19	.	DNA	951	short	189	medium	13981434	chromoarm	94	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	28786355	28786386	AT1TE94195	.	-	HELITRONY1E	Helitron	RC	31	tiny	447	high	13982385	chromoarm	63	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	28788492	28789862	AT1TE94200	.	-	ATREP10D	Helitron	RC	1370	short	1295	high	13984522	chromoarm	24	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	28793351	28793442	AT1TE94210	.	+	VANDAL8	MuDR	DNA	91	tiny	123	medium	13989381	chromoarm	701	no-CHH	no-CHH	.	.	.	.	.
Chr1	28798832	28799273	AT1TE94220	.	-	ATHPOGON1	Pogo	DNA	441	short	174	medium	13994862	chromoarm	52	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	28800604	28800943	AT1TE94225	.	-	ATREP11	Helitron	RC	339	short	841	high	13996634	chromoarm	1689	no-CHH	no-CHH	.	.	.	.	.
Chr1	28801928	28802539	AT1TE94230	.	+	HELITRONY2	Helitron	RC	611	short	198	medium	13997958	chromoarm	93	no-CHH	no-CHH	.	.	.	.	.
Chr1	28802539	28802573	AT1TE94235	.	+	HELITRONY1D	Helitron	RC	34	tiny	756	high	13998569	chromoarm	59	no-CHH	no-CHH	.	.	.	.	.
Chr1	28813976	28814284	AT1TE94270	.	-	ATENSPM1A	En-Spm	DNA	308	short	77	medium	14010006	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	28815349	28815416	AT1TE94275	.	-	ATREP11	Helitron	RC	67	tiny	841	high	14011379	chromoarm	971	no-CHH	no-CHH	.	.	.	.	.
Chr1	28817137	28817562	AT1TE94280	.	-	VANDAL17	MuDR	DNA	425	short	178	medium	14013167	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	28817933	28818873	AT1TE94285	.	-	VANDAL17	MuDR	DNA	940	short	178	medium	14013963	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	28821832	28822159	AT1TE94290	.	-	ATENSPM5	En-Spm	DNA	327	short	111	medium	14017862	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	28827194	28827347	AT1TE94300	.	-	HELITRONY1E	Helitron	RC	153	short	447	high	14023224	chromoarm	1997	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	28827348	28829167	AT1TE94305	.	+	ATREP10D	Helitron	RC	1820	short	1295	high	14023377	chromoarm	177	.	.	.	.	.	.	.
Chr1	28836493	28836646	AT1TE94320	.	+	LIMPET1	MuDR	DNA	153	short	116	medium	14032523	chromoarm	183	no-CHH	no-CHH	.	.	.	.	.
Chr1	28842888	28842979	AT1TE94340	.	-	VANDAL8	MuDR	DNA	91	tiny	123	medium	14038918	chromoarm	545	no-CHH	no-CHH	.	.	.	.	.
Chr1	28856117	28856877	AT1TE94380	.	+	HELITRONY1D	Helitron	RC	760	short	756	high	14052147	chromoarm	372	no-CHH	no-CHH	.	.	.	.	.
Chr1	28863665	28863785	AT1TE94400	.	+	ATREP11	Helitron	RC	120	short	841	high	14059695	chromoarm	1808	no-CHH	no-CHH	.	.	.	.	.
Chr1	28863785	28865139	AT1TE94405	.	-	ATREP10D	Helitron	RC	1354	short	1295	high	14059815	chromoarm	454	no-CHH	no-CHH	.	.	.	.	.
Chr1	28865139	28865191	AT1TE94410	.	+	ATREP4	Helitron	RC	52	tiny	832	high	14061169	chromoarm	402	no-CHH	no-CHH	.	.	.	.	.
Chr1	28865394	28865573	AT1TE94415	.	-	ATCOPIA68	Copia	LTR	179	short	43	low	14061424	chromoarm	20	no-CHH	no-CHH	.	.	.	.	.
Chr1	28891259	28891328	AT1TE94490	.	-	ATREP3	Helitron	RC	69	tiny	1439	high	14087289	chromoarm	966	no-CHH	no-CHH	.	.	.	.	.
Chr1	28891347	28891935	AT1TE94495	.	-	ATREP2	Helitron	RC	588	short	164	medium	14087377	chromoarm	359	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	28891935	28892124	AT1TE94500	.	+	ATREP10D	Helitron	RC	189	short	1295	high	14087965	chromoarm	170	no-CHH	RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	28912663	28913670	AT1TE94570	.	-	SIMPLEHAT1	HAT	DNA	1007	short	56	medium	14108693	chromoarm	716	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	28927728	28928127	AT1TE94620	.	+	HELITRONY3	Helitron	RC	399	short	1399	high	14123758	chromoarm	486	no-CHH	no-CHH	.	.	.	.	.
Chr1	28928127	28928223	AT1TE94625	.	+	HELITRONY1D	Helitron	RC	96	tiny	756	high	14124157	chromoarm	885	no-CHH	no-CHH	.	.	.	.	.
Chr1	28935707	28936420	AT1TE94640	.	+	HELITRONY3	Helitron	RC	713	short	1399	high	14131737	chromoarm	528	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	28964187	28964630	AT1TE94730	.	-	ATCOPIA61	Copia	LTR	443	short	12	low	14160217	chromoarm	1038	no-CHH	no-RdDM	.	.	.	.	.
Chr1	28973730	28974030	AT1TE94760	.	-	ATCOPIA78	Copia	LTR	300	short	24	low	14169760	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	28994619	28994720	AT1TE94830	.	+	VANDAL14	MuDR	DNA	102	short	25	low	14190648	chromoarm	667	.	.	.	.	.	.	.
Chr1	29015881	29015953	AT1TE94900	.	+	ATHATN4	HAT	DNA	72	tiny	56	medium	14211911	chromoarm	175	no-CHH	no-CHH	.	.	.	.	.
Chr1	29035072	29035448	AT1TE94960	.	+	HELITRONY1D	Helitron	RC	376	short	756	high	14231102	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	29064538	29065221	AT1TE95060	.	-	ATREP6	Helitron	RC	683	short	181	medium	14260568	chromoarm	91	no-CHH	no-CHH	.	.	.	.	.
Chr1	29078380	29079012	AT1TE95100	.	+	ATREP2A	Helitron	RC	632	short	116	medium	14274410	chromoarm	1128	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	29079012	29079151	AT1TE95105	.	+	ATREP3	Helitron	RC	139	short	1439	high	14275042	chromoarm	1760	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	29117635	29117868	AT1TE95230	.	+	VANDAL21	MuDR	DNA	233	short	64	medium	14313665	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	29125134	29125353	AT1TE95250	.	+	ATREP11	Helitron	RC	219	short	841	high	14321164	chromoarm	197	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	29125353	29125901	AT1TE95255	.	+	ATHPOGON1	Pogo	DNA	548	short	174	medium	14321383	chromoarm	416	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	29125901	29126187	AT1TE95260	.	+	ATREP15	Helitron	RC	286	short	1003	high	14321931	chromoarm	554	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr1	29134222	29134249	AT1TE95290	.	+	ATREP3	Helitron	RC	27	tiny	1439	high	14330252	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	29134249	29135462	AT1TE95295	.	+	ATREP10D	Helitron	RC	1213	short	1295	high	14330279	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	29135462	29135661	AT1TE95300	.	-	ATREP10D	Helitron	RC	199	short	1295	high	14331492	chromoarm	375	no-CHH	no-CHH	.	.	.	.	.
Chr1	29177412	29178148	AT1TE95440	.	+	HELITRONY3	Helitron	RC	736	short	1399	high	14373442	chromoarm	647	no-CHH	no-CHH	.	.	.	.	.
Chr1	29180154	29180294	AT1TE95445	.	+	ATHPOGON3	Pogo	DNA	140	short	118	medium	14376184	chromoarm	624	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	29180294	29181036	AT1TE95450	.	+	ATDNA2T9C	MuDR	DNA	742	short	242	high	14376324	chromoarm	73	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	29181036	29181061	AT1TE95455	.	+	HELITRON2	Helitron	RC	25	tiny	194	medium	14377066	chromoarm	48	no-CHH	no-CHH	.	.	.	.	.
Chr1	29181061	29181081	AT1TE95460	.	-	ATREP15	Helitron	RC	20	tiny	1003	high	14377091	chromoarm	28	no-CHH	no-CHH	.	.	.	.	.
Chr1	29201455	29201624	AT1TE95530	.	-	BRODYAGA1A	MuDR	DNA	169	short	586	high	14397485	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	29207930	29208023	AT1TE95550	.	-	BRODYAGA1A	MuDR	DNA	93	tiny	586	high	14403960	chromoarm	35	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	29208023	29208346	AT1TE95555	.	-	HELITRONY1D	Helitron	RC	323	short	756	high	14404053	chromoarm	128	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	29228167	29228331	AT1TE95620	.	+	ATCOPIA72	Copia	LTR	164	short	4	low	14424197	chromoarm	79	no-CHH	no-CHH	.	.	.	.	.
Chr1	29243896	29244136	AT1TE95670	.	+	ATREP11A	Helitron	RC	240	short	95	medium	14439926	chromoarm	944	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	29244136	29244718	AT1TE95675	.	+	ATREP2	Helitron	RC	582	short	164	medium	14440166	chromoarm	362	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	29244718	29244808	AT1TE95680	.	-	BRODYAGA1A	MuDR	DNA	90	tiny	586	high	14440748	chromoarm	272	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr1	29263870	29264177	AT1TE95740	.	+	ATLINE1_5	L1	LINE	307	short	91	medium	14459900	chromoarm	220	no-RdDM	no-RdDM	.	.	.	.	.
Chr1	29277380	29277585	AT1TE95780	.	+	ATENSPM1A	En-Spm	DNA	205	short	77	medium	14473410	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	29287324	29287684	AT1TE95810	.	-	BRODYAGA1	MuDR	DNA	360	short	251	high	14483354	chromoarm	257	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	29313017	29313049	AT1TE95890	.	-	ATREP5	Helitron	RC	33	tiny	624	high	14509046	chromoarm	43	.	.	.	.	.	.	.
Chr1	29313049	29313596	AT1TE95895	.	+	HELITRONY1D	Helitron	RC	547	short	756	high	14509079	chromoarm	76	no-CHH	no-RdDM	.	.	.	.	.
Chr1	29313596	29313649	AT1TE95900	.	-	HELITRONY1C	Helitron	RC	53	tiny	120	medium	14509626	chromoarm	623	no-CHH	no-CHH	.	.	.	.	.
Chr1	29319210	29319629	AT1TE95910	.	+	ATHATN7	HAT	DNA	419	short	71	medium	14515240	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	29319629	29320701	AT1TE95915	.	-	ATREP3	Helitron	RC	1072	short	1439	high	14515659	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	29320701	29320750	AT1TE95920	.	+	ATREP3	Helitron	RC	49	tiny	1439	high	14516731	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	29320755	29320777	AT1TE95925	.	-	HELITRON2	Helitron	RC	22	tiny	194	medium	14516785	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	29323247	29324191	AT1TE95930	.	+	BRODYAGA2	MuDR	DNA	944	short	525	high	14519277	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	29339655	29340708	AT1TE95980	.	-	ATREP15	Helitron	RC	1053	short	1003	high	14535685	chromoarm	164	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	29342233	29342365	AT1TE95985	.	-	ATHATN6	HAT	DNA	132	short	43	low	14538263	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	29342802	29343130	AT1TE95990	.	+	HELITRON1	Helitron	RC	328	short	130	medium	14538832	chromoarm	0	no-CHH	no-CHH	ExpressedAndAnnotated	29342923	29342449	-	transcript_id-"22de7a1d-3fd2-489a-9df3-28cbc8b84034|25"
Chr1	29352928	29353152	AT1TE96020	.	-	HELITRONY1D	Helitron	RC	224	short	756	high	14548958	chromoarm	60	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	29353152	29353514	AT1TE96025	.	+	BRODYAGA1A	MuDR	DNA	362	short	586	high	14549182	chromoarm	284	no-CHH	no-CHH	.	.	.	.	.
Chr1	29361838	29362181	AT1TE96050	.	-	ATREP5	Helitron	RC	343	short	624	high	14557868	chromoarm	2608	no-CHH	no-CHH	.	.	.	.	.
Chr1	29363203	29364071	AT1TE96055	.	+	ATREP5	Helitron	RC	868	short	624	high	14559233	chromoarm	718	no-CHH	no-CHH	.	.	.	.	.
Chr1	29364071	29364104	AT1TE96060	.	-	BRODYAGA2	MuDR	DNA	33	tiny	525	high	14560101	chromoarm	685	no-CHH	no-CHH	.	.	.	.	.
Chr1	29377752	29379561	AT1TE96100	.	+	ATMU11	MuDR	DNA	1809	short	20	low	14573782	chromoarm	1457	no-RdDM	no-RdDM	ExpressedAndAnnotated	29377465	29380321	+	transcript_id-"e4e6ccd0-2b59-4cd7-b03e-baf898097db2|3"
Chr1	29445153	29445223	AT1TE96320	.	-	ATCOPIA28	Copia	LTR	70	tiny	81	medium	14641183	chromoarm	2093	no-CHH	no-CHH	.	.	.	.	.
Chr1	29465026	29465465	AT1TE96390	.	-	BRODYAGA1A	MuDR	DNA	439	short	586	high	14661056	chromoarm	88	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	29468544	29468578	AT1TE96400	.	-	HELITRONY3	Helitron	RC	34	tiny	1399	high	14664574	chromoarm	186	no-CHH	no-CHH	.	.	.	.	.
Chr1	29468578	29470238	AT1TE96405	.	+	ARNOLDY1	MuDR	DNA	1660	short	237	high	14664608	chromoarm	220	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	29470238	29470293	AT1TE96410	.	+	ATREP15	Helitron	RC	55	tiny	1003	high	14666268	chromoarm	1880	no-CHH	no-CHH	.	.	.	.	.
Chr1	29470294	29470325	AT1TE96415	.	-	ATREP5	Helitron	RC	31	tiny	624	high	14666324	chromoarm	1936	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr1	29474554	29479485	AT1TE96425	.	+	ATMU3	MuDR	DNA	4931	medium	15	low	14670584	chromoarm	757	no-RdDM	no-RdDM	ExpressedAndAnnotated	29478229,29479233,29479233	29478407,29478468,29478545	+,-,-	transcript_id-"ef66d558-310d-4b4a-afa7-2c86991bea29|7",transcript_id-"3774fc9a-4684-4eea-8e7f-759ea8719ae0|24",transcript_id-"43763fcf-1fc6-470c-8107-e0e7d198529e|6"
Chr1	29479486	29479536	AT1TE96430	.	+	ATMU7	MuDR	DNA	50	tiny	32	low	14675516	chromoarm	2533	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	29480213	29480347	AT1TE96435	.	+	ATMU6N1	MuDR	DNA	134	short	39	low	14676243	chromoarm	1722	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	29489988	29490162	AT1TE96460	.	-	ATREP3	Helitron	RC	174	short	1439	high	14686018	chromoarm	732	no-CHH	no-CHH	.	.	.	.	.
Chr1	29523242	29523790	AT1TE96570	.	-	ATREP15	Helitron	RC	548	short	1003	high	14719272	chromoarm	246	no-CHH	no-CHH	.	.	.	.	.
Chr1	29526419	29527089	AT1TE96575	.	-	HELITRONY3	Helitron	RC	670	short	1399	high	14722449	chromoarm	56	no-CHH	no-CHH	.	.	.	.	.
Chr1	29527368	29527656	AT1TE96580	.	-	ATREP11	Helitron	RC	288	short	841	high	14723398	chromoarm	692	no-CHH	no-CHH	.	.	.	.	.
Chr1	29578070	29578609	AT1TE96750	.	+	HELITRON3	Helitron	RC	539	short	53	medium	14774100	chromoarm	664	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	29588227	29588826	AT1TE96780	.	+	ATREP9	Helitron	RC	599	short	201	high	14784257	chromoarm	110	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	29604581	29605310	AT1TE96830	.	-	META1	Copia	LTR	729	short	138	medium	14800611	chromoarm	24	no-CHH	no-CHH	.	.	.	.	.
Chr1	29611561	29611719	AT1TE96850	.	+	TAG2	HAT	DNA	158	short	86	medium	14807591	chromoarm	123	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	29611749	29612226	AT1TE96855	.	-	SIMPLEGUY1	Harbinger	DNA	477	short	116	medium	14807779	chromoarm	311	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	29612247	29612406	AT1TE96860	.	+	TAG2	HAT	DNA	159	short	86	medium	14808277	chromoarm	715	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	29641721	29641827	AT1TE96960	.	-	HELITRONY3A	Helitron	RC	106	short	49	low	14837751	chromoarm	244	no-CHH	no-CHH	.	.	.	.	.
Chr1	29702603	29702747	AT1TE97160	.	+	ATLINE1_4	L1	LINE	144	short	102	medium	14898633	chromoarm	666	no-CHH	no-CHH	.	.	.	.	.
Chr1	29711888	29712356	AT1TE97190	.	-	BRODYAGA1A	MuDR	DNA	468	short	586	high	14907918	chromoarm	622	no-CHH	no-CHH	.	.	.	.	.
Chr1	29761174	29761713	AT1TE97350	.	-	ATENSPM8	En-Spm	DNA	539	short	11	low	14957204	chromoarm	588	no-CHH	no-CHH	.	.	.	.	.
Chr1	29770546	29771233	AT1TE97380	.	+	HELITRONY1B	Helitron	RC	687	short	414	high	14966576	chromoarm	85	no-CHH	no-RdDM	LowExpressed	.	.	.	.
Chr1	29774153	29774231	AT1TE97385	.	-	ATREP1	Helitron	RC	78	tiny	498	high	14970183	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	29774231	29775138	AT1TE97390	.	-	ATREP1	Helitron	RC	907	short	498	high	14970261	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	29775139	29775165	AT1TE97395	.	+	ATENSPM8	En-Spm	DNA	26	tiny	11	low	14971169	chromoarm	0	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	29782343	29782593	AT1TE97410	.	-	VANDAL1	MuDR	DNA	250	short	80	medium	14978373	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	29809839	29810044	AT1TE97500	.	+	ATREP2	Helitron	RC	205	short	164	medium	15005869	chromoarm	291	no-CHH	no-CHH	.	.	.	.	.
Chr1	29840105	29840234	AT1TE97600	.	-	HELITRON4	Helitron	RC	129	short	199	medium	15036135	chromoarm	0	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr1	29840234	29841521	AT1TE97605	.	+	HELITRONY1B	Helitron	RC	1287	short	414	high	15036264	chromoarm	97	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr1	29875521	29875811	AT1TE97710	.	-	ATREP10D	Helitron	RC	290	short	1295	high	15071551	chromoarm	1355	no-CHH	no-CHH	.	.	.	.	.
Chr1	29879674	29880024	AT1TE97720	.	-	BRODYAGA1	MuDR	DNA	350	short	251	high	15075704	chromoarm	539	no-CHH	no-CHH	.	.	.	.	.
Chr1	29900380	29900453	AT1TE97790	.	+	ATLINE1_3A	L1	LINE	73	tiny	160	medium	15096410	chromoarm	163	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr1	29983276	29984079	AT1TE98060	.	+	ATREP5	Helitron	RC	803	short	624	high	15179306	chromoarm	527	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr1	29984079	29984291	AT1TE98065	.	-	ATREP11	Helitron	RC	212	short	841	high	15180109	chromoarm	1068	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	29984291	29984380	AT1TE98070	.	-	VANDAL22	MuDR	DNA	89	tiny	48	low	15180321	chromoarm	979	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	29984484	29984711	AT1TE98075	.	-	RP1_AT	.	DNA	227	short	87	medium	15180514	chromoarm	648	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	29992189	29992347	AT1TE98090	.	-	ATREP15	Helitron	RC	158	short	1003	high	15188219	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	29992347	29992610	AT1TE98095	.	-	ATTIRTA1	Tc1	DNA	263	short	95	medium	15188377	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	29992610	29992649	AT1TE98100	.	+	ATREP5	Helitron	RC	39	tiny	624	high	15188640	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	29999495	29999912	AT1TE98120	.	+	HELITRONY1A	Helitron	RC	417	short	271	high	15195525	chromoarm	544	no-CHH	no-CHH	.	.	.	.	.
Chr1	30005633	30006120	AT1TE98130	.	-	TAG1	HAT	DNA	487	short	28	low	15201663	chromoarm	1534	no-CHH	no-CHH	ExpressedAndAnnotated	30006913	30004172	-	transcript_id-"004ebae6-7672-44d8-a85a-1b2396dafe0a|8"
Chr1	30068689	30069495	AT1TE98340	.	-	ATREP11	Helitron	RC	806	short	841	high	15264719	chromoarm	527	no-CHH	no-CHH	.	.	.	.	.
Chr1	30100472	30103899	AT1TE98440	.	-	Unassigned	.	Unassigned	3427	medium	.	low	15296502	chromoarm	626	no-CHH	no-CHH	ExpressedAndAnnotated	30104552	30100446	-	transcript_id-"18b8bef8-26f8-46a6-9091-383b1e1af37b|3"
Chr1	30165872	30169345	AT1TE98640	.	-	ATREP15	Helitron	RC	3473	medium	1003	high	15361902	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	30167011	30167041	AT1TE98645	.	-	ATREP3	Helitron	RC	30	tiny	1439	high	15363041	chromoarm	797	no-CHH	no-CHH	.	.	.	.	.
Chr1	30169345	30169559	AT1TE98650	.	-	ATREP4	Helitron	RC	214	short	832	high	15365375	chromoarm	224	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	30170931	30171028	AT1TE98655	.	+	VANDAL5	MuDR	DNA	97	tiny	85	medium	15366961	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	30176458	30176635	AT1TE98665	.	+	ATDNA1T9A	MuDR	DNA	177	short	36	low	15372488	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	30220571	30221478	AT1TE98800	.	+	HELITRONY3	Helitron	RC	907	short	1399	high	15416601	chromoarm	301	no-CHH	no-CHH	.	.	.	.	.
Chr1	30245753	30245944	AT1TE98880	.	-	ATMU9	MuDR	DNA	191	short	16	low	15441783	chromoarm	1015	no-CHH	no-CHH	.	.	.	.	.
Chr1	30250486	30250620	AT1TE98890	.	-	ATREP11	Helitron	RC	134	short	841	high	15446516	chromoarm	1431	no-CHH	no-CHH	.	.	.	.	.
Chr1	30250620	30250699	AT1TE98895	.	-	ATREP3	Helitron	RC	79	tiny	1439	high	15446650	chromoarm	1565	no-CHH	no-CHH	.	.	.	.	.
Chr1	30250699	30250908	AT1TE98900	.	-	ATREP3	Helitron	RC	209	short	1439	high	15446729	chromoarm	1644	no-CHH	no-CHH	.	.	.	.	.
Chr1	30250909	30250977	AT1TE98905	.	-	ATREP3	Helitron	RC	69	tiny	1439	high	15446938	chromoarm	1853	.	.	.	.	.	.	.
Chr1	30250977	30253348	AT1TE98910	.	-	ATREP3	Helitron	RC	2371	medium	1439	high	15447007	chromoarm	1922	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	30253349	30253650	AT1TE98915	.	-	ATREP3	Helitron	RC	302	short	1439	high	15449378	chromoarm	2534	.	.	.	.	.	.	.
Chr1	30253650	30255513	AT1TE98920	.	-	ATREP3	Helitron	RC	1863	short	1439	high	15449680	chromoarm	671	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr1	30255513	30255811	AT1TE98925	.	-	ATREP3	Helitron	RC	298	short	1439	high	15451543	chromoarm	373	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr1	30255811	30255948	AT1TE98930	.	-	ATREP4	Helitron	RC	137	short	832	high	15451841	chromoarm	236	no-CHH	no-CHH	.	.	.	.	.
Chr1	30255948	30256010	AT1TE98935	.	-	ATREP3	Helitron	RC	62	tiny	1439	high	15451978	chromoarm	174	no-CHH	no-CHH	.	.	.	.	.
Chr1	30368410	30368888	AT1TE99300	.	-	VANDAL17	MuDR	DNA	478	short	178	medium	15564440	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr1	30381108	30381200	AT1TE99340	.	+	ATHATN3	HAT	DNA	92	tiny	70	medium	15577138	chromoarm	2633	no-CHH	no-CHH	.	.	.	.	.
Chr1	30384040	30384326	AT1TE99345	.	-	BRODYAGA1A	MuDR	DNA	286	short	586	high	15580070	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr1	30394245	30394658	AT1TE99370	.	-	HELITRONY1D	Helitron	RC	413	short	756	high	15590275	chromoarm	34	no-CHH	no-CHH	.	.	.	.	.
Chr1	30419217	30419329	AT1TE99450	.	+	ATREP15	Helitron	RC	112	short	1003	high	15615247	chromoarm	837	no-CHH	no-CHH	.	.	.	.	.
Chr2	10523	13069	AT2TE00010	.	-	ATGP1	Gypsy	LTR	2546	medium	144	medium	3598770	chromoarm	756	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	13071	29426	AT2TE00015	.	-	ATGP2	Gypsy	LTR	16355	long	48	low	3582413	chromoarm	3304	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	29427	30317	AT2TE00020	.	+	ATLANTYS3	Gypsy	LTR	890	short	142	medium	3581522	chromoarm	19660	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	30317	31444	AT2TE00025	.	+	ATLANTYS1	Gypsy	LTR	1127	short	153	medium	3580395	chromoarm	20550	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	31444	42029	AT2TE00030	.	+	ATLANTYS3	Gypsy	LTR	10585	long	142	medium	3569810	chromoarm	21677	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	31486	33553	AT2TE00035	.	+	ATGP2N	Gypsy	LTR	2067	medium	54	medium	3578286	chromoarm	21719	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	34293	34346	AT2TE00040	.	+	ATGP2	Gypsy	LTR	53	tiny	48	low	3577493	chromoarm	24526	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	34379	36436	AT2TE00045	.	+	ATGP2N	Gypsy	LTR	2057	medium	54	medium	3575403	chromoarm	24612	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	42033	42128	AT2TE00070	.	-	ATLANTYS3	Gypsy	LTR	95	tiny	142	medium	3569711	chromoarm	26208	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	42128	49796	AT2TE00075	.	-	ATGP2	Gypsy	LTR	7668	long	48	low	3562043	chromoarm	18540	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	49818	49859	AT2TE00080	.	-	ATLANTYS3	Gypsy	LTR	41	tiny	142	medium	3561980	chromoarm	18477	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	49859	50285	AT2TE00085	.	-	ATLANTYS3	Gypsy	LTR	426	short	142	medium	3561554	chromoarm	18051	no-RdDM	no-CHH	.	.	.	.	.
Chr2	52104	52383	AT2TE00090	.	-	TAT1_ATH	Gypsy	LTR	279	short	87	medium	3559456	chromoarm	15953	no-CHH	no-CHH	.	.	.	.	.
Chr2	52643	58681	AT2TE00095	.	-	ATLANTYS3	Gypsy	LTR	6038	long	142	medium	3553158	chromoarm	9655	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	55135	55394	AT2TE00100	.	+	VANDAL6	MuDR	DNA	259	short	89	medium	3556445	chromoarm	12942	no-CHH	no-CHH	.	.	.	.	.
Chr2	58681	64005	AT2TE00110	.	-	ATGP2	Gypsy	LTR	5324	long	48	low	3547834	chromoarm	4331	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	64005	68112	AT2TE00115	.	-	ATGP1	Gypsy	LTR	4107	medium	144	medium	3543727	chromoarm	224	no-RdDM	no-RdDM	ExpressedAndAnnotated	67988	67264	-	transcript_id-"f3df2a06-e8b7-4269-8523-398ad788b592|32"
Chr2	65070	67094	AT2TE00120	.	-	ATGP2N	Gypsy	LTR	2024	medium	54	medium	3544745	chromoarm	1242	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	69925	70795	AT2TE00130	.	+	ATREP19	.	DNA	870	short	189	medium	3541044	chromoarm	41	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	70795	71407	AT2TE00135	.	+	ATREP3	Helitron	RC	612	short	1439	high	3540432	chromoarm	911	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	71651	71802	AT2TE00140	.	-	ATDNAI27T9C	MuDR	DNA	151	short	108	medium	3540037	chromoarm	1653	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	71802	72196	AT2TE00145	.	-	LIMPET1	MuDR	DNA	394	short	116	medium	3539643	chromoarm	1259	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	72205	72240	AT2TE00150	.	-	ATDNAI27T9C	MuDR	DNA	35	tiny	108	medium	3539599	chromoarm	1215	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	72649	72805	AT2TE00155	.	-	VANDAL5A	MuDR	DNA	156	short	56	medium	3539034	chromoarm	650	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	112140	113018	AT2TE00350	.	+	ATREP15	Helitron	RC	878	short	1003	high	3498821	chromoarm	2004	no-CHH	no-CHH	.	.	.	.	.
Chr2	113474	114791	AT2TE00355	.	-	ATREP10D	Helitron	RC	1317	short	1295	high	3497048	chromoarm	231	no-CHH	no-CHH	.	.	.	.	.
Chr2	114791	114911	AT2TE00360	.	+	HELITRONY1B	Helitron	RC	120	short	414	high	3496928	chromoarm	111	no-CHH	no-CHH	.	.	.	.	.
Chr2	126900	126920	AT2TE00420	.	+	ATREP11	Helitron	RC	20	tiny	841	high	3484919	chromoarm	687	no-CHH	no-CHH	.	.	.	.	.
Chr2	126920	128152	AT2TE00425	.	+	HELITRONY1B	Helitron	RC	1232	short	414	high	3483687	chromoarm	287	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	129560	129637	AT2TE00430	.	-	ATREP3	Helitron	RC	77	tiny	1439	high	3482202	chromoarm	304	no-CHH	no-CHH	.	.	.	.	.
Chr2	129637	130119	AT2TE00435	.	-	ATREP15	Helitron	RC	482	short	1003	high	3481720	chromoarm	381	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	130119	130433	AT2TE00440	.	-	HELITRONY1D	Helitron	RC	314	short	756	high	3481406	chromoarm	863	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	131460	132285	AT2TE00445	.	-	HELITRONY1C	Helitron	RC	825	short	120	medium	3479554	chromoarm	657	no-CHH	no-CHH	.	.	.	.	.
Chr2	132285	132384	AT2TE00450	.	-	ATREP10D	Helitron	RC	99	tiny	1295	high	3479455	chromoarm	558	no-CHH	no-CHH	.	.	.	.	.
Chr2	138751	139009	AT2TE00480	.	-	TSCL	.	LINE?	258	short	81	medium	3472830	chromoarm	447	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	143226	143374	AT2TE00500	.	+	RathE3_cons	.	RathE3_cons	148	short	104	medium	3468465	chromoarm	0	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	144208	144292	AT2TE00505	.	+	ATSINE4	.	SINE	84	tiny	98	medium	3467547	chromoarm	399	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	150687	151156	AT2TE00530	.	-	BRODYAGA1A	MuDR	DNA	469	short	586	high	3460683	chromoarm	64	no-CHH	no-CHH	.	.	.	.	.
Chr2	152015	152232	AT2TE00535	.	+	ATMU1	MuDR	DNA	217	short	59	medium	3459607	chromoarm	248	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	152981	153199	AT2TE00540	.	-	ATMU1	MuDR	DNA	218	short	59	medium	3458640	chromoarm	339	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	176783	176982	AT2TE00660	.	+	BRODYAGA1A	MuDR	DNA	199	short	586	high	3434857	chromoarm	411	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	179754	180043	AT2TE00670	.	+	ATLINE1_5	L1	LINE	289	short	91	medium	3431796	chromoarm	434	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	187244	187484	AT2TE00710	.	-	TSCL	.	LINE?	240	short	81	medium	3424355	chromoarm	313	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	192070	192516	AT2TE00730	.	-	ATHATN5	HAT	DNA	446	short	42	low	3419323	chromoarm	1433	no-CHH	no-CHH	.	.	.	.	.
Chr2	192516	192538	AT2TE00735	.	+	ATREP10B	Helitron	RC	22	tiny	491	high	3419301	chromoarm	1411	no-CHH	no-CHH	.	.	.	.	.
Chr2	203542	203795	AT2TE00790	.	-	ATTIRTA1	Tc1	DNA	253	short	95	medium	3408044	chromoarm	1532	no-CHH	no-CHH	.	.	.	.	.
Chr2	204538	204686	AT2TE00795	.	-	RathE1_cons	.	RathE1_cons	148	short	213	high	3407153	chromoarm	1449	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	215550	216683	AT2TE00850	.	+	ATREP10D	Helitron	RC	1133	short	1295	high	3395156	chromoarm	296	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	226853	227064	AT2TE00900	.	+	DT1	Mariner	DNA	211	short	123	medium	3384775	chromoarm	856	no-CHH	no-CHH	.	.	.	.	.
Chr2	238047	238094	AT2TE00960	.	+	ATREP15	Helitron	RC	47	tiny	1003	high	3373745	chromoarm	1166	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	238124	238646	AT2TE00965	.	+	ATLINE1A	L1	LINE	522	short	289	high	3373193	chromoarm	1168	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	239108	239301	AT2TE00970	.	-	HELITRONY3A	Helitron	RC	193	short	49	low	3372538	chromoarm	513	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr2	240578	240621	AT2TE00975	.	+	HELITRONY1B	Helitron	RC	43	tiny	414	high	3371218	chromoarm	229	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr2	240621	240846	AT2TE00980	.	+	ATREP10B	Helitron	RC	225	short	491	high	3370993	chromoarm	272	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	240846	241949	AT2TE00985	.	+	ATREP10	Helitron	RC	1103	short	63	medium	3369890	chromoarm	347	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	241949	242050	AT2TE00990	.	+	ATHAT10	HAT	DNA	101	short	35	low	3369789	chromoarm	246	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	242854	243016	AT2TE00995	.	-	ATENSPM4	En-Spm	DNA	162	short	50	medium	3368823	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	243803	249211	AT2TE01000	.	-	ATLINEIII	L1	LINE	5408	long	196	medium	3362628	chromoarm	475	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	252099	252200	AT2TE01010	.	+	HELITRONY3	Helitron	RC	101	short	1399	high	3359639	chromoarm	293	no-CHH	no-CHH	.	.	.	.	.
Chr2	252200	252652	AT2TE01015	.	+	ATREP11	Helitron	RC	452	short	841	high	3359187	chromoarm	394	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	252652	252690	AT2TE01020	.	-	ATSINE4	.	SINE	38	tiny	98	medium	3359149	chromoarm	846	no-CHH	no-CHH	.	.	.	.	.
Chr2	254127	254204	AT2TE01025	.	+	ATSINE4	.	SINE	77	tiny	98	medium	3357635	chromoarm	1376	no-RdDM	no-CHH	.	.	.	.	.
Chr2	254204	254342	AT2TE01030	.	+	ATSINE4	.	SINE	138	short	98	medium	3357497	chromoarm	1238	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	254342	255444	AT2TE01035	.	-	ATREP10D	Helitron	RC	1102	short	1295	high	3356395	chromoarm	136	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	262037	262828	AT2TE01060	.	-	BRODYAGA2	MuDR	DNA	791	short	525	high	3349011	chromoarm	2352	no-CHH	no-CHH	.	.	.	.	.
Chr2	262828	262963	AT2TE01065	.	+	HELITRONY2	Helitron	RC	135	short	198	medium	3348876	chromoarm	2217	no-CHH	no-CHH	.	.	.	.	.
Chr2	266135	266435	AT2TE01075	.	-	ATLINE1_5	L1	LINE	300	short	91	medium	3345404	chromoarm	239	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	267515	267807	AT2TE01080	.	+	ATLINE1_3A	L1	LINE	292	short	160	medium	3344032	chromoarm	136	no-CHH	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	267907	268041	AT2TE01085	.	-	RathE3_cons	.	RathE3_cons	134	short	104	medium	3343798	chromoarm	528	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	275808	275985	AT2TE01120	.	-	RathE1_cons	.	RathE1_cons	177	short	213	high	3335854	chromoarm	1016	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	276793	277137	AT2TE01125	.	-	ATSINE4	.	SINE	344	short	98	medium	3334702	chromoarm	1066	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	277652	277968	AT2TE01130	.	-	VANDALNX2	MuDR	DNA	316	short	37	low	3333871	chromoarm	235	no-CHH	no-CHH	.	.	.	.	.
Chr2	282554	282744	AT2TE01150	.	+	RathE3_cons	.	RathE3_cons	190	short	104	medium	3329095	chromoarm	340	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	284309	284432	AT2TE01155	.	+	ATREP17	MuDR	DNA	123	short	34	low	3327407	chromoarm	275	no-CHH	no-CHH	.	.	.	.	.
Chr2	286809	287353	AT2TE01165	.	+	HELITRONY1C	Helitron	RC	544	short	120	medium	3324486	chromoarm	415	no-CHH	no-CHH	.	.	.	.	.
Chr2	287353	287547	AT2TE01170	.	-	ATDNA2T9B	MuDR	DNA	194	short	26	low	3324292	chromoarm	959	no-CHH	no-CHH	.	.	.	.	.
Chr2	287547	287582	AT2TE01175	.	-	ATDNA2T9C	MuDR	DNA	35	tiny	242	high	3324257	chromoarm	1153	no-CHH	no-CHH	.	.	.	.	.
Chr2	288558	289107	AT2TE01180	.	-	HELITRONY1B	Helitron	RC	549	short	414	high	3322732	chromoarm	1865	no-CHH	no-CHH	.	.	.	.	.
Chr2	288808	289065	AT2TE01185	.	-	ATTIRTA1	Tc1	DNA	257	short	95	medium	3322774	chromoarm	1907	no-CHH	no-CHH	.	.	.	.	.
Chr2	291482	291698	AT2TE01195	.	-	ATMU1	MuDR	DNA	217	short	59	medium	3320141	chromoarm	0	.	.	.	.	.	.	.
Chr2	292584	292730	AT2TE01200	.	+	BRODYAGA2	MuDR	DNA	146	short	525	high	3319109	chromoarm	88	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	292730	293916	AT2TE01205	.	+	ATREP8	Helitron	RC	1186	short	75	medium	3317923	chromoarm	234	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	293916	293999	AT2TE01210	.	-	ATREP10D	Helitron	RC	83	tiny	1295	high	3317840	chromoarm	1420	no-CHH	no-CHH	.	.	.	.	.
Chr2	293999	294967	AT2TE01215	.	-	HELITRONY1E	Helitron	RC	968	short	447	high	3316872	chromoarm	487	no-CHH	no-CHH	.	.	.	.	.
Chr2	294967	295065	AT2TE01220	.	+	BRODYAGA2	MuDR	DNA	98	tiny	525	high	3316774	chromoarm	389	no-CHH	no-CHH	.	.	.	.	.
Chr2	295652	295704	AT2TE01225	.	-	ATDNA2T9A	MuDR	DNA	52	tiny	48	low	3316135	chromoarm	96	no-CHH	no-CHH	.	.	.	.	.
Chr2	295704	296404	AT2TE01230	.	+	ATREP15	Helitron	RC	700	short	1003	high	3315435	chromoarm	148	no-CHH	no-CHH	.	.	.	.	.
Chr2	301616	302243	AT2TE01260	.	-	ATREP10D	Helitron	RC	627	short	1295	high	3309596	chromoarm	3798	no-CHH	no-CHH	.	.	.	.	.
Chr2	303115	303588	AT2TE01265	.	+	ATLINE2	L1	LINE	473	short	138	medium	3308251	chromoarm	3008	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	304640	305094	AT2TE01270	.	+	ATREP10B	Helitron	RC	454	short	491	high	3306745	chromoarm	1502	no-CHH	no-CHH	.	.	.	.	.
Chr2	305723	306044	AT2TE01275	.	+	ATSINE4	.	SINE	321	short	98	medium	3305795	chromoarm	552	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	313911	314625	AT2TE01310	.	+	ATREP10B	Helitron	RC	714	short	491	high	3297214	chromoarm	412	no-CHH	no-CHH	.	.	.	.	.
Chr2	314626	315282	AT2TE01315	.	-	ATLINE1A	L1	LINE	656	short	289	high	3296557	chromoarm	553	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	323996	324323	AT2TE01350	.	+	ATHATN4	HAT	DNA	327	short	56	medium	3287516	chromoarm	151	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	336493	336943	AT2TE01410	.	+	BRODYAGA1A	MuDR	DNA	450	short	586	high	3274896	chromoarm	68	no-CHH	no-CHH	.	.	.	.	.
Chr2	340230	340543	AT2TE01420	.	-	ATGP2N	Gypsy	LTR	313	short	54	medium	3271296	chromoarm	359	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	346936	347036	AT2TE01450	.	-	ATCOPIA75	Copia	LTR	100	short	20	low	3264803	chromoarm	500	no-CHH	no-CHH	.	.	.	.	.
Chr2	350314	350748	AT2TE01460	.	-	TSCL	.	LINE?	434	short	81	medium	3261091	chromoarm	362	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	351666	352117	AT2TE01465	.	-	ATHATN4	HAT	DNA	451	short	56	medium	3259722	chromoarm	1434	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	356679	357008	AT2TE01480	.	-	ATHPOGON1	Pogo	DNA	329	short	174	medium	3254831	chromoarm	655	no-CHH	no-CHH	.	.	.	.	.
Chr2	361023	361738	AT2TE01500	.	+	ATREP15	Helitron	RC	715	short	1003	high	3250101	chromoarm	342	no-CHH	no-CHH	.	.	.	.	.
Chr2	368355	368592	AT2TE01530	.	+	ATLINE1A	L1	LINE	237	short	289	high	3243247	chromoarm	339	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	370116	370297	AT2TE01535	.	+	ATDNA2T9A	MuDR	DNA	181	short	48	low	3241542	chromoarm	2100	no-CHH	no-CHH	.	.	.	.	.
Chr2	371225	372163	AT2TE01540	.	-	ATREP11	Helitron	RC	938	short	841	high	3239676	chromoarm	3209	no-CHH	no-CHH	.	.	.	.	.
Chr2	374588	376262	AT2TE01550	.	-	ATLINE1_5	L1	LINE	1674	short	91	medium	3235577	chromoarm	6572	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	376262	376287	AT2TE01555	.	-	ATLINE1_4	L1	LINE	25	tiny	102	medium	3235552	chromoarm	8246	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr2	376595	377257	AT2TE01560	.	-	TA11	L1	LINE	662	short	157	medium	3234582	chromoarm	8116	no-RdDM	no-RdDM	ExpressedAndAnnotated	377207,377458	376942,376942	-,-	transcript_id-"9c23ce97-b458-4910-895e-a3ed0158f93e|8",transcript_id-"ae124865-ba04-4c79-82ff-27622e1dda52|4"
Chr2	379375	379539	AT2TE01570	.	-	RathE1_cons	.	RathE1_cons	164	short	213	high	3232300	chromoarm	5834	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	384449	385195	AT2TE01590	.	-	BRODYAGA2	MuDR	DNA	746	short	525	high	3226644	chromoarm	178	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	385195	385271	AT2TE01595	.	-	ATENSPM2	En-Spm	DNA	76	tiny	114	medium	3226568	chromoarm	102	no-CHH	no-CHH	.	.	.	.	.
Chr2	390842	391401	AT2TE01620	.	-	ATHATN3A	HAT	DNA	559	short	20	low	3220438	chromoarm	161	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	393577	396843	AT2TE01630	.	-	ATREP3	Helitron	RC	3266	medium	1439	high	3214996	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	396843	396972	AT2TE01635	.	-	ATREP3	Helitron	RC	129	short	1439	high	3214867	chromoarm	12	no-CHH	no-CHH	.	.	.	.	.
Chr2	396972	397013	AT2TE01640	.	+	ATREP5	Helitron	RC	41	tiny	624	high	3214826	chromoarm	0	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	400078	400300	AT2TE01650	.	+	ATSINE4	.	SINE	222	short	98	medium	3211539	chromoarm	910	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	400300	400323	AT2TE01655	.	+	ATCOPIA30	Copia	LTR	23	tiny	33	low	3211516	chromoarm	1132	no-CHH	no-CHH	.	.	.	.	.
Chr2	401006	401157	AT2TE01660	.	+	ATREP3	Helitron	RC	151	short	1439	high	3210682	chromoarm	1838	no-CHH	no-CHH	.	.	.	.	.
Chr2	401157	402774	AT2TE01665	.	+	ATREP10D	Helitron	RC	1617	short	1295	high	3209065	chromoarm	1989	no-CHH	no-CHH	.	.	.	.	.
Chr2	403448	403533	AT2TE01670	.	-	RathE2_cons	.	RathE2_cons	85	tiny	74	medium	3208306	chromoarm	2602	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	403533	403617	AT2TE01675	.	-	RathE2_cons	.	RathE2_cons	84	tiny	74	medium	3208222	chromoarm	2518	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	404220	404826	AT2TE01680	.	+	ATHPOGON3	Pogo	DNA	606	short	118	medium	3207013	chromoarm	1309	no-CHH	no-CHH	.	.	.	.	.
Chr2	415276	415618	AT2TE01730	.	+	ATREP11	Helitron	RC	342	short	841	high	3196221	chromoarm	1572	no-CHH	no-CHH	.	.	.	.	.
Chr2	421013	421540	AT2TE01760	.	+	ATHATN3	HAT	DNA	527	short	70	medium	3190299	chromoarm	386	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	422972	423151	AT2TE01765	.	+	RathE3_cons	.	RathE3_cons	179	short	104	medium	3188688	chromoarm	403	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	424813	424935	AT2TE01770	.	+	ATTIRTA1	Tc1	DNA	122	short	95	medium	3186904	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	429196	429343	AT2TE01790	.	+	RathE1_cons	.	RathE1_cons	147	short	213	high	3182496	chromoarm	987	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	440426	440595	AT2TE01850	.	-	RathE1_cons	.	RathE1_cons	169	short	213	high	3171244	chromoarm	209	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	444939	445036	AT2TE01870	.	+	ATCOPIA30	Copia	LTR	98	tiny	33	low	3166803	chromoarm	702	.	.	.	.	.	.	.
Chr2	449758	449791	AT2TE01890	.	-	ATHATN1	HAT	DNA	33	tiny	69	medium	3162048	chromoarm	601	no-CHH	no-CHH	.	.	.	.	.
Chr2	450871	450913	AT2TE01895	.	-	ATREP3	Helitron	RC	42	tiny	1439	high	3160926	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	450913	450951	AT2TE01900	.	+	ATTIRX1A	.	DNA	38	tiny	63	medium	3160888	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	450951	451330	AT2TE01905	.	+	ATTIRX1B	.	DNA	379	short	44	low	3160509	chromoarm	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	451330	451495	AT2TE01910	.	-	ATREP1	Helitron	RC	165	short	498	high	3160344	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	463225	463762	AT2TE01970	.	-	HELITRONY3	Helitron	RC	537	short	1399	high	3148077	chromoarm	80	no-CHH	no-CHH	.	.	.	.	.
Chr2	485689	485852	AT2TE02080	.	-	SIMPLEGUY1	Harbinger	DNA	163	short	116	medium	3125987	chromoarm	1689	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	499869	499896	AT2TE02150	.	-	ATREP10A	Helitron	RC	27	tiny	279	high	3111943	chromoarm	310	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr2	499896	499934	AT2TE02155	.	+	META1	Copia	LTR	38	tiny	138	medium	3111905	chromoarm	337	no-CHH	no-RdDM	.	.	.	.	.
Chr2	499934	503974	AT2TE02160	.	+	ATREP3	Helitron	RC	4040	medium	1439	high	3107865	chromoarm	375	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	510652	511831	AT2TE02190	.	-	HELITRONY1E	Helitron	RC	1179	short	447	high	3100008	chromoarm	1498	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	511831	511913	AT2TE02195	.	-	ATREP4	Helitron	RC	82	tiny	832	high	3099926	chromoarm	2677	no-CHH	no-CHH	.	.	.	.	.
Chr2	512285	512343	AT2TE02200	.	+	ATREP9	Helitron	RC	58	tiny	201	high	3099496	chromoarm	3131	no-CHH	no-CHH	.	.	.	.	.
Chr2	512343	513278	AT2TE02205	.	+	ATREP10B	Helitron	RC	935	short	491	high	3098561	chromoarm	3189	no-CHH	no-CHH	.	.	.	.	.
Chr2	514535	514612	AT2TE02210	.	+	ATREP11	Helitron	RC	77	tiny	841	high	3097227	chromoarm	3715	no-CHH	no-CHH	.	.	.	.	.
Chr2	514612	514680	AT2TE02215	.	+	ATREP4	Helitron	RC	68	tiny	832	high	3097159	chromoarm	3647	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	514680	517194	AT2TE02220	.	+	HELITRONY1E	Helitron	RC	2514	medium	447	high	3094645	chromoarm	1133	no-CHH	no-CHH	.	.	.	.	.
Chr2	517194	517420	AT2TE02225	.	-	ATREP4	Helitron	RC	226	short	832	high	3094419	chromoarm	907	no-CHH	no-CHH	.	.	.	.	.
Chr2	529918	530007	AT2TE02280	.	-	TA11	L1	LINE	89	tiny	157	medium	3081832	chromoarm	417	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	532332	537391	AT2TE02290	.	-	TA11	L1	LINE	5059	long	157	medium	3074448	chromoarm	696	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	534988	535050	AT2TE02295	.	-	TA11	L1	LINE	62	tiny	157	medium	3076789	chromoarm	3268	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	542163	542270	AT2TE02330	.	+	HELITRONY1E	Helitron	RC	107	short	447	high	3069569	chromoarm	1756	no-CHH	no-CHH	.	.	.	.	.
Chr2	542270	544756	AT2TE02335	.	+	ATREP3	Helitron	RC	2486	medium	1439	high	3067083	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	544756	544781	AT2TE02340	.	+	HELITRONY1B	Helitron	RC	25	tiny	414	high	3067058	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	545161	545185	AT2TE02345	.	-	ATREP5	Helitron	RC	24	tiny	624	high	3066654	chromoarm	0	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	545185	545395	AT2TE02350	.	+	ATREP4	Helitron	RC	210	short	832	high	3066444	chromoarm	16	no-CHH	no-CHH	.	.	.	.	.
Chr2	545395	546518	AT2TE02355	.	-	ATREP10B	Helitron	RC	1123	short	491	high	3065321	chromoarm	145	no-CHH	no-CHH	.	.	.	.	.
Chr2	546518	546651	AT2TE02360	.	+	HELITRONY1E	Helitron	RC	133	short	447	high	3065188	chromoarm	12	no-CHH	no-CHH	.	.	.	.	.
Chr2	553394	553685	AT2TE02390	.	+	ATENSPM1A	En-Spm	DNA	291	short	77	medium	3058154	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	558986	559748	AT2TE02420	.	+	ATREP10A	Helitron	RC	762	short	279	high	3052091	chromoarm	376	no-CHH	no-CHH	.	.	.	.	.
Chr2	559258	559626	AT2TE02425	.	+	ATREP10D	Helitron	RC	368	short	1295	high	3052213	chromoarm	648	no-CHH	no-CHH	.	.	.	.	.
Chr2	560179	560448	AT2TE02430	.	-	ATSINE4	.	SINE	269	short	98	medium	3051391	chromoarm	527	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	566713	566756	AT2TE02460	.	+	ARNOLD3	MuDR	DNA	43	tiny	45	low	3045083	chromoarm	3752	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	566756	582571	AT2TE02465	.	+	ARNOLD1	MuDR	DNA	15815	long	39	low	3029268	chromoarm	1526	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	566944,575185,575188,576767,576629,577845,582420	567172,572167,572479,575969,575973,577240,577240	+,-,-,-,-,-,-	transcript_id-"bd55b0ca-ea13-49ba-a8b9-13e8b635d7a4|3",transcript_id-"986743be-fc93-45be-a32c-0acfe5afa142|6",transcript_id-"b54d69ce-5d12-49fd-934e-d784942fa760|7",transcript_id-"510d66d9-06b7-4f6e-b622-6f0834eb64a6|3",transcript_id-"0bd79be6-c961-489e-817d-2c75ab74ebfb|6",transcript_id-"09156a63-1165-4044-823a-d4b828963a91|5",transcript_id-"20fa0754-5385-4c7e-9dc7-1e4f35a8a1b6|3"
Chr2	582576	582618	AT2TE02470	.	-	BRODYAGA1A	MuDR	DNA	42	tiny	586	high	3029221	chromoarm	1479	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	582618	583282	AT2TE02475	.	+	BRODYAGA1	MuDR	DNA	664	short	251	high	3028557	chromoarm	815	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	590055	590239	AT2TE02500	.	+	ATCOPIA50	Copia	LTR	184	short	17	low	3021600	chromoarm	153	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	596348	597748	AT2TE02530	.	-	ATLINEIII	L1	LINE	1400	short	196	medium	3014091	chromoarm	523	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	600703	600756	AT2TE02540	.	+	META1	Copia	LTR	53	tiny	138	medium	3011083	chromoarm	0	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	600770	601263	AT2TE02545	.	-	HELITRONY1D	Helitron	RC	493	short	756	high	3010576	chromoarm	0	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	601916	602068	AT2TE02550	.	+	ATIS112A	Harbinger	DNA	152	short	173	medium	3009771	chromoarm	477	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	603502	603585	AT2TE02555	.	+	RathE1_cons	.	RathE1_cons	83	tiny	213	high	3008254	chromoarm	867	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	611239	611313	AT2TE02590	.	+	ATTIR16T3A	.	DNA	74	tiny	106	medium	3000526	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	612657	612921	AT2TE02595	.	-	RathE2_cons	.	RathE2_cons	264	short	74	medium	2998918	chromoarm	837	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	613563	613995	AT2TE02600	.	-	ATREP15	Helitron	RC	432	short	1003	high	2997844	chromoarm	1743	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	623460	623853	AT2TE02650	.	-	ATIS112A	Harbinger	DNA	393	short	173	medium	2987986	chromoarm	376	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	624974	625442	AT2TE02655	.	+	ATREP11	Helitron	RC	468	short	841	high	2986397	chromoarm	1435	no-CHH	no-CHH	.	.	.	.	.
Chr2	625442	626028	AT2TE02660	.	-	TNAT1A	.	DNA	586	short	162	medium	2985811	chromoarm	849	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	626028	626486	AT2TE02665	.	-	ATREP10D	Helitron	RC	458	short	1295	high	2985353	chromoarm	391	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	631072	631344	AT2TE02680	.	+	RP1_AT	.	DNA	272	short	87	medium	2980495	chromoarm	68	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	636878	637401	AT2TE02710	.	-	ATTIR16T3A	.	DNA	523	short	106	medium	2974438	chromoarm	610	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	637401	637680	AT2TE02715	.	-	HELITRONY3	Helitron	RC	279	short	1399	high	2974159	chromoarm	331	no-CHH	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	639439	639520	AT2TE02720	.	-	ATREP11	Helitron	RC	81	tiny	841	high	2972319	chromoarm	134	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	639520	640379	AT2TE02725	.	+	ATREP10B	Helitron	RC	859	short	491	high	2971460	chromoarm	215	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	640379	640467	AT2TE02730	.	+	HELITRONY1E	Helitron	RC	88	tiny	447	high	2971372	chromoarm	1074	no-CHH	no-CHH	.	.	.	.	.
Chr2	640467	640869	AT2TE02735	.	+	ATREP11A	Helitron	RC	402	short	95	medium	2970970	chromoarm	1162	no-CHH	no-CHH	.	.	.	.	.
Chr2	642413	642723	AT2TE02740	.	+	ATDNA2T9C	MuDR	DNA	310	short	242	high	2969116	chromoarm	3108	no-CHH	no-CHH	.	.	.	.	.
Chr2	644082	644698	AT2TE02745	.	+	ATREP3	Helitron	RC	616	short	1439	high	2967141	chromoarm	3345	no-CHH	no-CHH	.	.	.	.	.
Chr2	644698	644803	AT2TE02750	.	+	ATREP3	Helitron	RC	105	short	1439	high	2967036	chromoarm	3240	no-CHH	no-CHH	.	.	.	.	.
Chr2	654788	654873	AT2TE02800	.	-	ATREP15	Helitron	RC	85	tiny	1003	high	2956966	chromoarm	167	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	654873	660310	AT2TE02805	.	-	ATREP10D	Helitron	RC	5437	long	1295	high	2951529	chromoarm	252	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	656216	656728	AT2TE02810	.	+	ATREP10D	Helitron	RC	512	short	1295	high	2955111	chromoarm	1595	no-CHH	no-CHH	.	.	.	.	.
Chr2	658347	659038	AT2TE02815	.	+	ATREP10D	Helitron	RC	691	short	1295	high	2952801	chromoarm	2054	no-CHH	no-CHH	.	.	.	.	.
Chr2	660310	660552	AT2TE02820	.	+	HELITRONY3	Helitron	RC	242	short	1399	high	2951287	chromoarm	540	no-CHH	no-CHH	.	.	.	.	.
Chr2	660552	660581	AT2TE02825	.	-	ATREP10D	Helitron	RC	29	tiny	1295	high	2951258	chromoarm	511	no-CHH	no-CHH	.	.	.	.	.
Chr2	660581	660609	AT2TE02830	.	-	ATREP10A	Helitron	RC	28	tiny	279	high	2951230	chromoarm	483	no-CHH	no-CHH	.	.	.	.	.
Chr2	665355	665420	AT2TE02850	.	+	HELITRONY1E	Helitron	RC	65	tiny	447	high	2946419	chromoarm	18	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	665420	665569	AT2TE02855	.	-	ATREP5	Helitron	RC	149	short	624	high	2946270	chromoarm	83	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	665569	666688	AT2TE02860	.	-	ATREP15	Helitron	RC	1119	short	1003	high	2945151	chromoarm	232	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	666688	666798	AT2TE02865	.	+	ATREP10D	Helitron	RC	110	short	1295	high	2945041	chromoarm	332	PolIV-and-RDR6-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	670292	670443	AT2TE02875	.	+	AT9NMU1	MuDR	DNA	152	short	45	low	2941396	chromoarm	189	.	.	.	.	.	.	.
Chr2	670463	670605	AT2TE02880	.	+	TNAT1A	.	DNA	142	short	162	medium	2941234	chromoarm	361	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	675551	676681	AT2TE02910	.	+	HELITRONY1A	Helitron	RC	1130	short	271	high	2935158	chromoarm	6	no-CHH	no-CHH	.	.	.	.	.
Chr2	679113	679495	AT2TE02920	.	-	ATREP10B	Helitron	RC	382	short	491	high	2932344	chromoarm	968	no-CHH	no-CHH	.	.	.	.	.
Chr2	680439	680482	AT2TE02925	.	+	ATHAT10	HAT	DNA	43	tiny	35	low	2931357	chromoarm	2294	no-CHH	no-CHH	.	.	.	.	.
Chr2	680482	681274	AT2TE02930	.	+	ATREP3	Helitron	RC	792	short	1439	high	2930565	chromoarm	2337	no-CHH	no-CHH	.	.	.	.	.
Chr2	685813	687238	AT2TE02950	.	+	ATREP10D	Helitron	RC	1425	short	1295	high	2924601	chromoarm	145	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	686374	687108	AT2TE02955	.	+	ATREP13	Helitron	RC	734	short	106	medium	2924731	chromoarm	275	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	704300	704695	AT2TE03040	.	-	ATTIRX1A	.	DNA	395	short	63	medium	2907144	chromoarm	281	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	706882	707022	AT2TE03050	.	+	ATREP3	Helitron	RC	140	short	1439	high	2904817	chromoarm	388	no-CHH	no-CHH	.	.	.	.	.
Chr2	707022	710196	AT2TE03055	.	+	ATREP3	Helitron	RC	3174	medium	1439	high	2901643	chromoarm	525	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	708840	709399	AT2TE03060	.	+	ATHATN6	HAT	DNA	559	short	43	low	2902440	chromoarm	1322	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	710196	710217	AT2TE03065	.	+	ATREP15	Helitron	RC	21	tiny	1003	high	2901622	chromoarm	504	no-RdDM	no-CHH	.	.	.	.	.
Chr2	713305	713789	AT2TE03075	.	-	ATMU3N1	MuDR	DNA	484	short	19	low	2898050	chromoarm	700	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	713868	713948	AT2TE03080	.	+	VANDAL2N1	MuDR	DNA	80	tiny	51	medium	2897891	chromoarm	1263	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	713977	714338	AT2TE03085	.	+	ATDNA2T9C	MuDR	DNA	361	short	242	high	2897501	chromoarm	1372	no-CHH	no-CHH	.	.	.	.	.
Chr2	714695	714781	AT2TE03090	.	-	ATREP10D	Helitron	RC	86	tiny	1295	high	2897058	chromoarm	2090	no-CHH	no-CHH	.	.	.	.	.
Chr2	714782	715390	AT2TE03095	.	-	META1	Copia	LTR	609	short	138	medium	2896449	chromoarm	2176	.	.	.	.	.	.	.
Chr2	715390	716942	AT2TE03100	.	-	ATREP6	Helitron	RC	1552	short	181	medium	2894897	chromoarm	743	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	716942	717049	AT2TE03105	.	-	HELITRONY3	Helitron	RC	107	short	1399	high	2894790	chromoarm	636	no-CHH	no-CHH	.	.	.	.	.
Chr2	717049	717156	AT2TE03110	.	-	ATREP4	Helitron	RC	107	short	832	high	2894683	chromoarm	529	no-CHH	no-CHH	.	.	.	.	.
Chr2	720017	720185	AT2TE03120	.	-	ATLINE2	L1	LINE	168	short	138	medium	2891654	chromoarm	790	no-CHH	no-CHH	.	.	.	.	.
Chr2	720847	721013	AT2TE03125	.	+	ATREP4	Helitron	RC	166	short	832	high	2890826	chromoarm	1620	no-CHH	no-CHH	.	.	.	.	.
Chr2	721013	722126	AT2TE03130	.	+	ATREP9	Helitron	RC	1113	short	201	high	2889713	chromoarm	1786	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	722126	722642	AT2TE03135	.	+	ATREP9	Helitron	RC	516	short	201	high	2889197	chromoarm	1520	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	722929	723058	AT2TE03140	.	-	HELITRONY1E	Helitron	RC	129	short	447	high	2888781	chromoarm	1104	no-CHH	no-CHH	.	.	.	.	.
Chr2	723058	723482	AT2TE03145	.	-	ATREP14	Helitron	RC	424	short	47	low	2888357	chromoarm	680	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	728074	728171	AT2TE03160	.	+	ATREP10A	Helitron	RC	97	tiny	279	high	2883668	chromoarm	2589	no-CHH	no-CHH	.	.	.	.	.
Chr2	728956	729170	AT2TE03165	.	-	HELITRONY3	Helitron	RC	214	short	1399	high	2882669	chromoarm	3217	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	729170	729993	AT2TE03170	.	+	HELITRONY1E	Helitron	RC	823	short	447	high	2881846	chromoarm	2394	no-CHH	no-CHH	.	.	.	.	.
Chr2	735110	735190	AT2TE03200	.	+	VANDAL2N1	MuDR	DNA	80	tiny	51	medium	2876649	chromoarm	220	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	736574	737445	AT2TE03205	.	-	ATREP11	Helitron	RC	871	short	841	high	2874394	chromoarm	28	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	737445	737545	AT2TE03210	.	+	BRODYAGA2	MuDR	DNA	100	short	525	high	2874294	chromoarm	899	no-CHH	no-CHH	.	.	.	.	.
Chr2	737545	737575	AT2TE03215	.	+	ATREP11	Helitron	RC	30	tiny	841	high	2874264	chromoarm	928	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr2	737575	737633	AT2TE03220	.	-	ATREP11A	Helitron	RC	58	tiny	95	medium	2874206	chromoarm	870	no-CHH	no-CHH	.	.	.	.	.
Chr2	741781	742363	AT2TE03240	.	-	ATHATN5	HAT	DNA	582	short	42	low	2869476	chromoarm	2012	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	743419	743962	AT2TE03245	.	+	ATREP3	Helitron	RC	543	short	1439	high	2867877	chromoarm	1812	no-CHH	no-CHH	.	.	.	.	.
Chr2	743962	744665	AT2TE03250	.	+	TNAT1A	.	DNA	703	short	162	medium	2867174	chromoarm	1109	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	749205	749743	AT2TE03270	.	-	HELITRONY3	Helitron	RC	538	short	1399	high	2862096	chromoarm	192	no-CHH	no-CHH	.	.	.	.	.
Chr2	749304	749560	AT2TE03275	.	+	ATTIRTA1	Tc1	DNA	256	short	95	medium	2862279	chromoarm	375	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	753051	753260	AT2TE03285	.	-	ATGP9B	Gypsy	LTR	209	short	27	low	2858579	chromoarm	1151	no-RdDM	no-CHH	.	.	.	.	.
Chr2	754358	754596	AT2TE03290	.	+	ATLINE1A	L1	LINE	238	short	289	high	2857243	chromoarm	1846	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	755083	755411	AT2TE03295	.	-	ATLINE1A	L1	LINE	328	short	289	high	2856428	chromoarm	1031	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	755500	755787	AT2TE03300	.	+	RathE1_cons	.	RathE1_cons	287	short	213	high	2856052	chromoarm	655	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	760997	761024	AT2TE03330	.	-	ATREP3	Helitron	RC	27	tiny	1439	high	2850815	chromoarm	389	no-CHH	no-CHH	.	.	.	.	.
Chr2	761024	761738	AT2TE03335	.	-	BRODYAGA2	MuDR	DNA	714	short	525	high	2850101	chromoarm	416	no-CHH	no-CHH	.	.	.	.	.
Chr2	762465	762603	AT2TE03340	.	-	RathE1_cons	.	RathE1_cons	138	short	213	high	2849236	chromoarm	569	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	767568	768258	AT2TE03370	.	+	HELITRONY3	Helitron	RC	690	short	1399	high	2843581	chromoarm	232	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr2	768258	768473	AT2TE03375	.	+	ATREP11	Helitron	RC	215	short	841	high	2843366	chromoarm	915	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	784923	785149	AT2TE03450	.	-	ATREP15	Helitron	RC	226	short	1003	high	2826690	chromoarm	277	no-CHH	no-CHH	.	.	.	.	.
Chr2	785652	785672	AT2TE03455	.	+	ATREP10D	Helitron	RC	20	tiny	1295	high	2826167	chromoarm	1006	no-CHH	no-CHH	.	.	.	.	.
Chr2	785677	786195	AT2TE03460	.	-	ATHPOGON1	Pogo	DNA	518	short	174	medium	2825644	chromoarm	1031	no-CHH	no-CHH	.	.	.	.	.
Chr2	786195	787440	AT2TE03465	.	+	ATREP10D	Helitron	RC	1245	short	1295	high	2824399	chromoarm	1267	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	787440	787564	AT2TE03470	.	-	ATREP4	Helitron	RC	124	short	832	high	2824275	chromoarm	1143	no-RdDM	no-CHH	.	.	.	.	.
Chr2	791355	791456	AT2TE03480	.	-	ATREP2	Helitron	RC	102	short	164	medium	2820383	chromoarm	408	.	.	.	.	.	.	.
Chr2	791456	792456	AT2TE03485	.	-	ATREP15	Helitron	RC	1000	short	1003	high	2819383	chromoarm	510	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	793047	793095	AT2TE03490	.	-	ATREP10D	Helitron	RC	48	tiny	1295	high	2818744	chromoarm	2101	no-CHH	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	793095	793989	AT2TE03495	.	-	HELITRONY1A	Helitron	RC	894	short	271	high	2817850	chromoarm	1906	no-CHH	no-CHH	.	.	.	.	.
Chr2	793989	794449	AT2TE03500	.	-	HELITRONY1D	Helitron	RC	460	short	756	high	2817390	chromoarm	1446	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	794449	795647	AT2TE03505	.	+	ATREP6	Helitron	RC	1198	short	181	medium	2816192	chromoarm	248	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	799732	800457	AT2TE03520	.	-	ATREP5	Helitron	RC	725	short	624	high	2811382	chromoarm	482	no-CHH	no-CHH	.	.	.	.	.
Chr2	808173	808354	AT2TE03560	.	+	ATCOPIA62	Copia	LTR	181	short	16	low	2803485	chromoarm	1034	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	808410	809054	AT2TE03565	.	+	ATCOPIA62	Copia	LTR	644	short	16	low	2802785	chromoarm	1271	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	811293	811546	AT2TE03575	.	+	ATREP10D	Helitron	RC	253	short	1295	high	2800293	chromoarm	4154	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	811546	812862	AT2TE03580	.	+	ATREP11	Helitron	RC	1316	short	841	high	2798977	chromoarm	4407	no-CHH	no-CHH	.	.	.	.	.
Chr2	819642	819714	AT2TE03610	.	-	ATGP10	Gypsy	LTR	72	tiny	165	medium	2792125	chromoarm	722	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	823018	823146	AT2TE03620	.	+	ATGP10	Gypsy	LTR	128	short	165	medium	2788693	chromoarm	918	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	824785	825021	AT2TE03625	.	+	ATGP10	Gypsy	LTR	236	short	165	medium	2786818	chromoarm	1608	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	825361	825444	AT2TE03630	.	+	ATREP14	Helitron	RC	83	tiny	47	low	2786395	chromoarm	1185	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	825444	825986	AT2TE03635	.	+	HELITRON5	Helitron	RC	542	short	56	medium	2785853	chromoarm	643	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	825986	826273	AT2TE03640	.	+	ATREP2A	Helitron	RC	287	short	116	medium	2785566	chromoarm	356	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	826273	826296	AT2TE03645	.	+	ATREP2A	Helitron	RC	23	tiny	116	medium	2785543	chromoarm	333	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	826296	826448	AT2TE03650	.	-	VANDAL8	MuDR	DNA	152	short	123	medium	2785391	chromoarm	181	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr2	840898	841060	AT2TE03720	.	+	ATLINE1A	L1	LINE	162	short	289	high	2770779	chromoarm	242	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	846208	846558	AT2TE03750	.	+	ATCOPIA36	Copia	LTR	350	short	14	low	2765281	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	859116	859217	AT2TE03810	.	-	ATREP17	MuDR	DNA	101	short	34	low	2752622	chromoarm	374	no-CHH	no-RdDM	.	.	.	.	.
Chr2	859217	859340	AT2TE03815	.	+	ATREP17	MuDR	DNA	123	short	34	low	2752499	chromoarm	251	no-CHH	no-CHH	.	.	.	.	.
Chr2	870815	871058	AT2TE03870	.	+	ATIS112A	Harbinger	DNA	243	short	173	medium	2740781	chromoarm	536	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	871078	873128	AT2TE03875	.	-	HELITRONY3	Helitron	RC	2050	medium	1399	high	2738711	chromoarm	585	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	873129	873413	AT2TE03880	.	+	ATREP10D	Helitron	RC	285	short	1295	high	2738426	chromoarm	300	.	.	.	.	.	.	.
Chr2	878350	878374	AT2TE03910	.	+	HELITRONY3	Helitron	RC	24	tiny	1399	high	2733465	chromoarm	872	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	878374	878980	AT2TE03915	.	-	HELITRONY3	Helitron	RC	606	short	1399	high	2732859	chromoarm	266	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr2	878980	879072	AT2TE03920	.	+	HELITRONY3A	Helitron	RC	92	tiny	49	low	2732767	chromoarm	174	no-CHH	no-CHH	.	.	.	.	.
Chr2	885225	885245	AT2TE03950	.	+	META1	Copia	LTR	21	tiny	138	medium	2726594	chromoarm	1143	.	.	.	.	.	.	.
Chr2	885246	885617	AT2TE03955	.	-	BRODYAGA1A	MuDR	DNA	372	short	586	high	2726222	chromoarm	1164	.	.	.	.	.	.	.
Chr2	885618	885675	AT2TE03960	.	-	BRODYAGA2	MuDR	DNA	58	tiny	525	high	2726164	chromoarm	1536	.	.	LowExpressed	.	.	.	.
Chr2	886379	887438	AT2TE03965	.	+	ATREP15	Helitron	RC	1059	short	1003	high	2724401	chromoarm	2298	PolIV-and-RDR6-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	887860	888776	AT2TE03970	.	-	BRODYAGA2	MuDR	DNA	916	short	525	high	2723063	chromoarm	987	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	888776	888895	AT2TE03975	.	-	HELITRONY1B	Helitron	RC	119	short	414	high	2722944	chromoarm	868	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	893849	894388	AT2TE04000	.	-	ATHATN5	HAT	DNA	539	short	42	low	2717451	chromoarm	277	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	894484	895595	AT2TE04005	.	-	ARNOLDY1	MuDR	DNA	1111	short	237	high	2716244	chromoarm	912	no-CHH	no-CHH	.	.	.	.	.
Chr2	896355	897324	AT2TE04010	.	-	HELITRONY1E	Helitron	RC	969	short	447	high	2714515	chromoarm	2769	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	897325	897348	AT2TE04015	.	+	ATREP3	Helitron	RC	24	tiny	1439	high	2714491	chromoarm	2745	.	.	.	.	.	.	.
Chr2	897751	897772	AT2TE04020	.	+	HELITRONY1B	Helitron	RC	22	tiny	414	high	2714067	chromoarm	2321	.	.	.	.	.	.	.
Chr2	897786	898656	AT2TE04025	.	+	ATREP10D	Helitron	RC	870	short	1295	high	2713183	chromoarm	1437	no-CHH	no-CHH	.	.	.	.	.
Chr2	898656	898809	AT2TE04030	.	-	HELITRONY1B	Helitron	RC	153	short	414	high	2713030	chromoarm	1284	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	904457	904625	AT2TE04060	.	+	ATDNAI27T9A	MuDR	DNA	168	short	116	medium	2707214	chromoarm	888	PolIV-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	904625	904656	AT2TE04065	.	-	ATDNAI27T9C	MuDR	DNA	31	tiny	108	medium	2707183	chromoarm	1056	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	909196	909704	AT2TE04080	.	+	HELITRON4	Helitron	RC	508	short	199	medium	2702135	chromoarm	404	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	909733	914341	AT2TE04085	.	+	META1	Copia	LTR	4608	medium	138	medium	2697498	chromoarm	941	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	914341	915293	AT2TE04090	.	+	ATMUN1	MuDR	DNA	952	short	107	medium	2696546	chromoarm	2067	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	915293	915648	AT2TE04095	.	+	HELITRONY1E	Helitron	RC	355	short	447	high	2696191	chromoarm	1712	no-CHH	no-CHH	.	.	.	.	.
Chr2	919814	920007	AT2TE04110	.	-	ATDNATA1	Mariner	DNA	193	short	28	low	2691832	chromoarm	1260	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	920977	921016	AT2TE04115	.	-	AT9TSD1	MuDR	DNA	39	tiny	55	medium	2690823	chromoarm	2423	no-CHH	no-CHH	.	.	.	.	.
Chr2	924709	925031	AT2TE04125	.	-	BRODYAGA1A	MuDR	DNA	322	short	586	high	2686808	chromoarm	6155	no-RdDM	no-CHH	.	.	.	.	.
Chr2	926130	929956	AT2TE04130	.	-	ATCOPIA56	Copia	LTR	3826	medium	16	low	2681883	chromoarm	5475	no-RdDM	no-RdDM	ExpressedAndAnnotated	926592	926225	-	transcript_id-"77a8f91b-2078-4504-a790-6e9756de73e8|3"
Chr2	931661	931730	AT2TE04135	.	+	ATCOPIA68	Copia	LTR	69	tiny	43	low	2680109	chromoarm	3701	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	932415	932540	AT2TE04140	.	-	VANDAL22	MuDR	DNA	125	short	48	low	2679299	chromoarm	2891	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	932540	933984	AT2TE04145	.	+	ATREP15	Helitron	RC	1444	short	1003	high	2677855	chromoarm	1447	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	933323	933516	AT2TE04150	.	-	ATENSPM2	En-Spm	DNA	193	short	114	medium	2678323	chromoarm	1915	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	933516	933803	AT2TE04155	.	-	VANDAL22	MuDR	DNA	287	short	48	low	2678036	chromoarm	1628	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	934042	934254	AT2TE04160	.	-	ATREP17	MuDR	DNA	212	short	34	low	2677585	chromoarm	1177	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	962141	962524	AT2TE04300	.	+	ATREP15	Helitron	RC	383	short	1003	high	2649315	chromoarm	239	no-CHH	no-CHH	.	.	.	.	.
Chr2	963291	963521	AT2TE04305	.	-	ATHATN9	HAT	DNA	230	short	12	low	2648318	chromoarm	165	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	963607	964191	AT2TE04310	.	-	HELITRONY3	Helitron	RC	584	short	1399	high	2647648	chromoarm	40	no-RdDM	no-CHH	.	.	.	.	.
Chr2	967828	967927	AT2TE04320	.	+	ATMU9	MuDR	DNA	99	tiny	16	low	2643912	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	972431	972726	AT2TE04340	.	+	ATMUN1	MuDR	DNA	295	short	107	medium	2639113	chromoarm	78	no-CHH	no-CHH	.	.	.	.	.
Chr2	977903	978716	AT2TE04370	.	-	ATREP4	Helitron	RC	813	short	832	high	2633123	chromoarm	566	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	979583	979661	AT2TE04375	.	-	ATREP3	Helitron	RC	78	tiny	1439	high	2632178	chromoarm	2246	no-CHH	no-CHH	.	.	.	.	.
Chr2	979661	979859	AT2TE04380	.	-	ATREP3	Helitron	RC	198	short	1439	high	2631980	chromoarm	2313	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	979859	980818	AT2TE04385	.	-	ATREP3	Helitron	RC	959	short	1439	high	2631021	chromoarm	1354	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	990831	991006	AT2TE04430	.	+	ATLINE1A	L1	LINE	176	short	289	high	2620833	chromoarm	0	.	.	.	.	.	.	.
Chr2	993232	993503	AT2TE04440	.	+	TSCL	.	LINE?	271	short	81	medium	2618336	chromoarm	567	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	998622	999137	AT2TE04470	.	+	ATHATN5	HAT	DNA	515	short	42	low	2612702	chromoarm	284	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	999137	999182	AT2TE04475	.	-	ATREP11	Helitron	RC	45	tiny	841	high	2612657	chromoarm	239	no-CHH	no-CHH	.	.	.	.	.
Chr2	1002168	1002784	AT2TE04485	.	+	HELITRONY3	Helitron	RC	616	short	1399	high	2609055	chromoarm	683	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	1005121	1005363	AT2TE04495	.	+	ATHATN1	HAT	DNA	242	short	69	medium	2606476	chromoarm	899	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	1005363	1005393	AT2TE04500	.	+	ATHAT2	HAT	DNA	30	tiny	19	low	2606446	chromoarm	1082	no-CHH	no-CHH	.	.	.	.	.
Chr2	1007125	1007722	AT2TE04505	.	+	ATREP10B	Helitron	RC	597	short	491	high	2604117	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	1009755	1010282	AT2TE04515	.	-	HELITRONY2	Helitron	RC	527	short	198	medium	2601557	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	1010608	1011039	AT2TE04520	.	-	VANDAL3	MuDR	DNA	431	short	177	medium	2600800	chromoarm	0	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	1011232	1012992	AT2TE04525	.	-	VANDAL3	MuDR	DNA	1760	short	177	medium	2598847	chromoarm	0	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	1017218	1017843	AT2TE04540	.	+	ATREP9	Helitron	RC	625	short	201	high	2593996	chromoarm	282	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	1018858	1019085	AT2TE04545	.	-	ATLINE1_1	L1	LINE	227	short	61	medium	2592754	chromoarm	647	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1021463	1021631	AT2TE04555	.	-	ATLINE1_1	L1	LINE	169	short	61	medium	2590208	chromoarm	391	.	.	.	.	.	.	.
Chr2	1025929	1026107	AT2TE04570	.	-	ATREP5	Helitron	RC	178	short	624	high	2585732	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	1026107	1026759	AT2TE04575	.	+	HELITRONY3	Helitron	RC	652	short	1399	high	2585080	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	1027647	1028020	AT2TE04580	.	+	HELITRONY1A	Helitron	RC	373	short	271	high	2583819	chromoarm	271	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1032979	1033363	AT2TE04610	.	+	BRODYAGA1A	MuDR	DNA	384	short	586	high	2578476	chromoarm	543	no-CHH	no-CHH	.	.	.	.	.
Chr2	1033363	1033472	AT2TE04615	.	-	HELITRONY3	Helitron	RC	109	short	1399	high	2578367	chromoarm	434	no-CHH	no-CHH	.	.	.	.	.
Chr2	1037743	1038911	AT2TE04630	.	-	ATREP1	Helitron	RC	1169	short	498	high	2572928	chromoarm	206	.	.	.	.	.	.	.
Chr2	1038911	1039436	AT2TE04635	.	+	ATREP10D	Helitron	RC	525	short	1295	high	2572403	chromoarm	0	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	1047701	1048320	AT2TE04670	.	-	ATREP7	Helitron	RC	619	short	164	medium	2563519	chromoarm	571	no-CHH	no-CHH	.	.	.	.	.
Chr2	1048320	1049410	AT2TE04675	.	-	ATREP8	Helitron	RC	1090	short	75	medium	2562429	chromoarm	1190	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1049410	1049468	AT2TE04680	.	-	ATREP7	Helitron	RC	58	tiny	164	medium	2562371	chromoarm	2040	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	1058429	1059472	AT2TE04730	.	-	ATREP10D	Helitron	RC	1043	short	1295	high	2552367	chromoarm	453	no-CHH	no-CHH	.	.	.	.	.
Chr2	1065926	1066514	AT2TE04760	.	-	HELITRONY1D	Helitron	RC	588	short	756	high	2545325	chromoarm	202	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	1073744	1074640	AT2TE04800	.	+	ATLINE1_3A	L1	LINE	896	short	160	medium	2537199	chromoarm	222	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	1074645	1074752	AT2TE04805	.	-	HELITRONY3	Helitron	RC	107	short	1399	high	2537087	chromoarm	1123	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	1074752	1075061	AT2TE04810	.	-	BRODYAGA1A	MuDR	DNA	309	short	586	high	2536778	chromoarm	1230	no-CHH	no-CHH	.	.	.	.	.
Chr2	1075061	1075557	AT2TE04815	.	+	ATREP11	Helitron	RC	496	short	841	high	2536282	chromoarm	1522	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1075557	1076405	AT2TE04820	.	-	ATREP13	Helitron	RC	848	short	106	medium	2535434	chromoarm	674	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1076415	1076727	AT2TE04825	.	-	ATREP5	Helitron	RC	312	short	624	high	2535112	chromoarm	352	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	1078470	1078560	AT2TE04830	.	-	ATTIR16T3A	.	DNA	90	tiny	106	medium	2533279	chromoarm	452	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1078560	1078821	AT2TE04835	.	-	ATTIRX1A	.	DNA	261	short	63	medium	2533018	chromoarm	542	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1078822	1079016	AT2TE04840	.	+	ATLINE1A	L1	LINE	195	short	289	high	2532823	chromoarm	622	.	.	.	.	.	.	.
Chr2	1079016	1079594	AT2TE04845	.	-	ARNOLDY2	MuDR	DNA	578	short	288	high	2532245	chromoarm	44	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1083447	1083487	AT2TE04855	.	-	ATREP10D	Helitron	RC	40	tiny	1295	high	2528352	chromoarm	1444	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	1083487	1083518	AT2TE04860	.	-	ATREP10D	Helitron	RC	31	tiny	1295	high	2528321	chromoarm	1484	no-CHH	no-CHH	.	.	.	.	.
Chr2	1083518	1085478	AT2TE04865	.	-	HELITRONY3	Helitron	RC	1960	short	1399	high	2526361	chromoarm	81	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	1085478	1085514	AT2TE04870	.	-	ATDNAI27T9A	MuDR	DNA	36	tiny	116	medium	2526325	chromoarm	45	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	1085931	1086588	AT2TE04875	.	-	LIMPET1	MuDR	DNA	657	short	116	medium	2525251	chromoarm	0	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	1086694	1086753	AT2TE04880	.	-	ATDNAI27T9A	MuDR	DNA	60	tiny	116	medium	2525086	chromoarm	705	.	.	LowExpressed	.	.	.	.
Chr2	1086753	1086980	AT2TE04885	.	-	ATREP3	Helitron	RC	227	short	1439	high	2524859	chromoarm	765	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	1086980	1087060	AT2TE04890	.	-	ATREP10D	Helitron	RC	80	tiny	1295	high	2524779	chromoarm	992	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	1087060	1087330	AT2TE04895	.	-	ATREP10B	Helitron	RC	270	short	491	high	2524509	chromoarm	1072	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1087330	1090322	AT2TE04900	.	+	ATREP10D	Helitron	RC	2992	medium	1295	high	2521517	chromoarm	1342	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1090322	1090484	AT2TE04905	.	+	ATREP10A	Helitron	RC	162	short	279	high	2521355	chromoarm	2779	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1090484	1092946	AT2TE04910	.	-	ATREP11	Helitron	RC	2462	medium	841	high	2518893	chromoarm	317	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	1092946	1093190	AT2TE04915	.	+	HELITRONY3	Helitron	RC	244	short	1399	high	2518649	chromoarm	73	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1093190	1093244	AT2TE04920	.	+	ATREP4	Helitron	RC	54	tiny	832	high	2518595	chromoarm	19	no-CHH	no-RdDM	.	.	.	.	.
Chr2	1108691	1110025	AT2TE05000	.	-	ATHAT3	HAT	DNA	1334	short	23	low	2501814	chromoarm	2273	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	1109029	1109123	AT2TE05005	.	-	ATHAT2	HAT	DNA	94	tiny	19	low	2502716	chromoarm	2611	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	1110025	1110383	AT2TE05010	.	-	ATHAT7	HAT	DNA	358	short	20	low	2501456	chromoarm	3607	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	1111382	1111755	AT2TE05015	.	-	HELITRON2	Helitron	RC	373	short	194	medium	2500084	chromoarm	2423	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1111756	1111809	AT2TE05020	.	+	ATREP11	Helitron	RC	54	tiny	841	high	2500030	chromoarm	2369	.	.	.	.	.	.	.
Chr2	1111809	1112230	AT2TE05025	.	+	ATREP5	Helitron	RC	421	short	624	high	2499609	chromoarm	1948	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1112952	1113888	AT2TE05030	.	+	ATREP10D	Helitron	RC	936	short	1295	high	2497951	chromoarm	290	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	1123883	1124103	AT2TE05080	.	-	ATLINE1_5	L1	LINE	220	short	91	medium	2487736	chromoarm	872	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	1125401	1125516	AT2TE05085	.	+	HELITRONY1E	Helitron	RC	115	short	447	high	2486323	chromoarm	2390	no-CHH	no-CHH	.	.	.	.	.
Chr2	1125516	1125662	AT2TE05090	.	+	HELITRONY1A	Helitron	RC	146	short	271	high	2486177	chromoarm	2505	no-CHH	no-CHH	.	.	.	.	.
Chr2	1125662	1127612	AT2TE05095	.	-	ATREP8	Helitron	RC	1950	short	75	medium	2484227	chromoarm	2009	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1127612	1127678	AT2TE05100	.	-	HELITRONY3	Helitron	RC	66	tiny	1399	high	2484161	chromoarm	1943	no-CHH	no-CHH	.	.	.	.	.
Chr2	1135135	1135476	AT2TE05140	.	+	ATLINE1_5	L1	LINE	341	short	91	medium	2476363	chromoarm	1910	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	1139953	1140077	AT2TE05160	.	+	LIMPET1	MuDR	DNA	124	short	116	medium	2471762	chromoarm	144	no-CHH	no-CHH	.	.	.	.	.
Chr2	1140521	1141892	AT2TE05165	.	-	HELITRONY3	Helitron	RC	1371	short	1399	high	2469947	chromoarm	712	no-CHH	no-CHH	.	.	.	.	.
Chr2	1142448	1142763	AT2TE05170	.	-	DT1	Mariner	DNA	315	short	123	medium	2469076	chromoarm	177	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	1147890	1147955	AT2TE05200	.	+	ATLINE1A	L1	LINE	65	tiny	289	high	2463884	chromoarm	12	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	1154663	1155913	AT2TE05230	.	+	ATREP10D	Helitron	RC	1250	short	1295	high	2455926	chromoarm	378	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1155920	1156665	AT2TE05235	.	-	HELITRONY3	Helitron	RC	745	short	1399	high	2455174	chromoarm	116	no-CHH	no-CHH	.	.	.	.	.
Chr2	1160256	1160535	AT2TE05245	.	-	ATLINE1_4	L1	LINE	279	short	102	medium	2451304	chromoarm	1561	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1170282	1170500	AT2TE05290	.	+	RathE3_cons	.	RathE3_cons	218	short	104	medium	2441339	chromoarm	725	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1172689	1172842	AT2TE05300	.	+	ATLINE1A	L1	LINE	153	short	289	high	2438997	chromoarm	327	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	1174273	1174479	AT2TE05305	.	-	ATREP1	Helitron	RC	206	short	498	high	2437360	chromoarm	158	no-CHH	no-CHH	.	.	.	.	.
Chr2	1176996	1177850	AT2TE05315	.	+	ATCOPIA24	Copia	LTR	854	short	27	low	2433989	chromoarm	399	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr2	1177850	1178780	AT2TE05320	.	+	ATREP5	Helitron	RC	930	short	624	high	2433059	chromoarm	1253	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	1183683	1183911	AT2TE05340	.	-	ATREP11	Helitron	RC	228	short	841	high	2427928	chromoarm	231	no-CHH	no-CHH	.	.	.	.	.
Chr2	1183911	1184425	AT2TE05345	.	+	BRODYAGA2	MuDR	DNA	514	short	525	high	2427414	chromoarm	459	no-CHH	no-CHH	.	.	.	.	.
Chr2	1184425	1184445	AT2TE05350	.	+	VANDALNX2	MuDR	DNA	20	tiny	37	low	2427394	chromoarm	973	no-CHH	no-CHH	.	.	.	.	.
Chr2	1190723	1191098	AT2TE05380	.	-	ATCOPIA94	Copia	LTR	375	short	39	low	2420741	chromoarm	2572	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	1193174	1193618	AT2TE05390	.	-	BRODYAGA1	MuDR	DNA	444	short	251	high	2418221	chromoarm	4266	no-CHH	no-CHH	.	.	.	.	.
Chr2	1193939	1194608	AT2TE05395	.	+	TNAT2A	.	DNA	669	short	38	low	2417231	chromoarm	3276	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1199027	1203654	AT2TE05410	.	-	HELITRON4	Helitron	RC	4627	medium	199	medium	2408185	chromoarm	778	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	1203654	1203675	AT2TE05415	.	-	HELITRON5	Helitron	RC	21	tiny	56	medium	2408164	chromoarm	1244	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	1204271	1205405	AT2TE05420	.	-	HELITRONY1E	Helitron	RC	1134	short	447	high	2406434	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1206014	1206684	AT2TE05425	.	-	HELITRONY1D	Helitron	RC	670	short	756	high	2405155	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1206971	1207472	AT2TE05430	.	+	HELITRONY1E	Helitron	RC	501	short	447	high	2404367	chromoarm	722	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	1207472	1207565	AT2TE05435	.	-	ATREP5	Helitron	RC	93	tiny	624	high	2404274	chromoarm	1223	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	1207565	1208618	AT2TE05440	.	+	ARNOLD2	MuDR	DNA	1053	short	68	medium	2403221	chromoarm	1316	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	1208538	1208687	+	transcript_id-"42ccb635-4711-4821-8e85-a6f03556ac80|3"
Chr2	1209541	1209608	AT2TE05445	.	+	ATREP10D	Helitron	RC	67	tiny	1295	high	2402231	chromoarm	3292	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1209608	1210367	AT2TE05450	.	+	HELITRONY1D	Helitron	RC	759	short	756	high	2401472	chromoarm	2865	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1210367	1211793	AT2TE05455	.	+	ATDNA2T9B	MuDR	DNA	1426	short	26	low	2400046	chromoarm	1439	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1211812	1212437	AT2TE05460	.	+	HELITRONY1A	Helitron	RC	625	short	271	high	2399402	chromoarm	795	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1211960	1212362	AT2TE05465	.	-	ATDNA2T9C	MuDR	DNA	402	short	242	high	2399477	chromoarm	870	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	1212437	1214281	AT2TE05470	.	-	ATREP3	Helitron	RC	1844	short	1439	high	2397558	chromoarm	0	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	1215811	1216334	AT2TE05475	.	-	ATREP15	Helitron	RC	523	short	1003	high	2395505	chromoarm	346	no-RdDM	no-CHH	.	.	.	.	.
Chr2	1216334	1216682	AT2TE05480	.	-	ATTIRX1B	.	DNA	348	short	44	low	2395157	chromoarm	869	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1216682	1216831	AT2TE05485	.	+	ATMUN1	MuDR	DNA	149	short	107	medium	2395008	chromoarm	736	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr2	1216831	1217817	AT2TE05490	.	+	ATREP10B	Helitron	RC	986	short	491	high	2394022	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	1219936	1219991	AT2TE05500	.	-	ATREP4	Helitron	RC	55	tiny	832	high	2391848	chromoarm	1119	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	1222443	1222977	AT2TE05510	.	-	ATREP6	Helitron	RC	534	short	181	medium	2388862	chromoarm	921	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1222977	1224368	AT2TE05515	.	+	HELITRONY3	Helitron	RC	1391	short	1399	high	2387471	chromoarm	63	no-RdDM	no-CHH	.	.	.	.	.
Chr2	1224368	1224459	AT2TE05520	.	-	ATREP3	Helitron	RC	91	tiny	1439	high	2387380	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	1224459	1224687	AT2TE05525	.	+	ATREP11	Helitron	RC	228	short	841	high	2387152	chromoarm	0	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1226206	1227657	AT2TE05530	.	+	ATHILA7A	Gypsy	LTR	1451	short	31	low	2384182	chromoarm	1453	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	1229232	1229454	AT2TE05535	.	+	ATLINE2	L1	LINE	222	short	138	medium	2382385	chromoarm	4479	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	1229454	1232487	AT2TE05540	.	+	ATLINEIII	L1	LINE	3033	medium	196	medium	2379352	chromoarm	4701	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	1232665	1233185	AT2TE05545	.	-	Unassigned	.	Unassigned	520	short	.	low	2378654	chromoarm	5491	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	1233379	1233558	AT2TE05550	.	+	ATREP10D	Helitron	RC	179	short	1295	high	2378281	chromoarm	5118	no-CHH	no-CHH	.	.	.	.	.
Chr2	1233558	1233692	AT2TE05555	.	-	HELITRONY1D	Helitron	RC	134	short	756	high	2378147	chromoarm	4984	no-CHH	no-CHH	.	.	.	.	.
Chr2	1233692	1234527	AT2TE05560	.	-	HELITRONY1D	Helitron	RC	835	short	756	high	2377312	chromoarm	4149	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	1234528	1234813	AT2TE05565	.	-	HELITRONY1B	Helitron	RC	286	short	414	high	2377026	chromoarm	3863	.	.	.	.	.	.	.
Chr2	1239823	1240538	AT2TE05590	.	+	ATHATN5	HAT	DNA	715	short	42	low	2371301	chromoarm	752	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	1240538	1240769	AT2TE05595	.	+	ATHATN10	HAT	DNA	231	short	48	low	2371070	chromoarm	1467	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	1240769	1240984	AT2TE05600	.	+	ATREP1	Helitron	RC	215	short	498	high	2370855	chromoarm	1698	no-CHH	no-CHH	.	.	.	.	.
Chr2	1240984	1243325	AT2TE05605	.	+	HELITRONY3	Helitron	RC	2341	medium	1399	high	2368514	chromoarm	1913	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1243325	1243385	AT2TE05610	.	+	HELITRONY3	Helitron	RC	60	tiny	1399	high	2368454	chromoarm	4254	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	1243385	1243579	AT2TE05615	.	+	ATHATN10	HAT	DNA	194	short	48	low	2368260	chromoarm	4314	no-CHH	no-CHH	.	.	.	.	.
Chr2	1243579	1243725	AT2TE05620	.	+	ATREP1	Helitron	RC	146	short	498	high	2368114	chromoarm	4508	no-RdDM	no-CHH	.	.	.	.	.
Chr2	1244556	1244585	AT2TE05625	.	+	ATHILA4B_LTR	Gypsy	LTR	29	tiny	143	medium	2367254	chromoarm	5485	no-CHH	no-CHH	.	.	.	.	.
Chr2	1244585	1245277	AT2TE05630	.	+	ATHILA4A	Gypsy	LTR	692	short	310	high	2366562	chromoarm	5514	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1247893	1248575	AT2TE05640	.	-	BRODYAGA2	MuDR	DNA	682	short	525	high	2363264	chromoarm	8822	no-CHH	no-CHH	.	.	.	.	.
Chr2	1248578	1248777	AT2TE05645	.	+	ATREP11	Helitron	RC	199	short	841	high	2363062	chromoarm	9507	no-CHH	no-CHH	.	.	.	.	.
Chr2	1250019	1251253	AT2TE05650	.	-	HELITRONY3	Helitron	RC	1234	short	1399	high	2360586	chromoarm	9653	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	1251253	1251362	AT2TE05655	.	+	ATREP3	Helitron	RC	109	short	1439	high	2360477	chromoarm	9544	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	1251362	1251391	AT2TE05660	.	+	ATREP10B	Helitron	RC	29	tiny	491	high	2360448	chromoarm	9515	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	1252885	1253040	AT2TE05665	.	+	ATREP3	Helitron	RC	155	short	1439	high	2358799	chromoarm	7866	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	1253040	1253604	AT2TE05670	.	+	ATREP11	Helitron	RC	564	short	841	high	2358235	chromoarm	7302	no-CHH	no-CHH	.	.	.	.	.
Chr2	1253604	1254475	AT2TE05675	.	+	ATLINE2	L1	LINE	871	short	138	medium	2357364	chromoarm	6431	no-CHH	no-CHH	ExpressedAndAnnotated	1254293	1254470	+	transcript_id-"9400ec44-fd42-4196-b6ab-915503601069|6"
Chr2	1256677	1256731	AT2TE05685	.	+	ATREP15	Helitron	RC	54	tiny	1003	high	2355108	chromoarm	4175	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	1256732	1256831	AT2TE05690	.	-	HELITRONY1D	Helitron	RC	100	short	756	high	2355008	chromoarm	4075	.	.	.	.	.	.	.
Chr2	1256831	1256920	AT2TE05695	.	-	HELITRONY1D	Helitron	RC	89	tiny	756	high	2354919	chromoarm	3986	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	1256920	1257815	AT2TE05700	.	-	HELITRONY1D	Helitron	RC	895	short	756	high	2354024	chromoarm	3091	no-CHH	no-CHH	.	.	.	.	.
Chr2	1257815	1257889	AT2TE05705	.	+	ATREP10D	Helitron	RC	74	tiny	1295	high	2353950	chromoarm	3017	no-CHH	no-CHH	.	.	.	.	.
Chr2	1258312	1258968	AT2TE05710	.	+	ATIS112A	Harbinger	DNA	656	short	173	medium	2352871	chromoarm	1938	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	1259647	1259836	AT2TE05715	.	+	ATREP15	Helitron	RC	189	short	1003	high	2352003	chromoarm	1070	no-CHH	no-CHH	.	.	.	.	.
Chr2	1259836	1260401	AT2TE05720	.	+	HELITRONY3	Helitron	RC	565	short	1399	high	2351438	chromoarm	505	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	1260401	1260816	AT2TE05725	.	-	ATREP10D	Helitron	RC	415	short	1295	high	2351023	chromoarm	90	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	1262968	1263000	AT2TE05735	.	+	ATTIR16T3A	.	DNA	32	tiny	106	medium	2348839	chromoarm	560	no-CHH	no-CHH	.	.	.	.	.
Chr2	1263000	1263526	AT2TE05740	.	+	HELITRONY3	Helitron	RC	526	short	1399	high	2348313	chromoarm	592	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	1263526	1263650	AT2TE05745	.	-	ATREP4	Helitron	RC	124	short	832	high	2348189	chromoarm	1118	no-CHH	no-CHH	.	.	.	.	.
Chr2	1263842	1264176	AT2TE05750	.	-	ATREP16	MuDR	DNA	334	short	47	low	2347663	chromoarm	1434	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	1264726	1271840	AT2TE05755	.	-	VANDAL21	MuDR	DNA	7114	long	64	medium	2339999	chromoarm	2318	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	1268439,1268438	1267611,1267613	-,-	transcript_id-"c7ddf9e3-47a3-4a9e-ae10-1bbbf4d09c04|8",transcript_id-"729a73c9-a6e8-449f-99c8-6cfec4019954|56"
Chr2	1271981	1272231	AT2TE05760	.	-	ATREP16	MuDR	DNA	250	short	47	low	2339608	chromoarm	2195	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1272286	1272480	AT2TE05765	.	-	ATLINE1_2	L1	LINE	194	short	41	low	2339359	chromoarm	1946	no-CHH	no-CHH	.	.	.	.	.
Chr2	1274200	1274336	AT2TE05770	.	+	ATLINE1_3A	L1	LINE	136	short	160	medium	2337503	chromoarm	90	no-CHH	no-CHH	.	.	.	.	.
Chr2	1276362	1276580	AT2TE05780	.	+	BRODYAGA1A	MuDR	DNA	218	short	586	high	2335259	chromoarm	318	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	1277997	1278286	AT2TE05785	.	-	RathE2_cons	.	RathE2_cons	289	short	74	medium	2333553	chromoarm	319	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	1280818	1280862	AT2TE05795	.	-	ATREP3	Helitron	RC	44	tiny	1439	high	2330977	chromoarm	1120	no-CHH	no-CHH	.	.	.	.	.
Chr2	1280868	1281521	AT2TE05800	.	-	ATREP13	Helitron	RC	653	short	106	medium	2330318	chromoarm	461	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1286036	1287238	AT2TE05820	.	+	HELITRONY1E	Helitron	RC	1202	short	447	high	2324601	chromoarm	127	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	1287238	1287844	AT2TE05825	.	+	ATHPOGON3	Pogo	DNA	606	short	118	medium	2323995	chromoarm	1329	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	1287846	1287870	AT2TE05830	.	+	ATREP3	Helitron	RC	24	tiny	1439	high	2323969	chromoarm	1937	no-CHH	no-CHH	.	.	.	.	.
Chr2	1288667	1288912	AT2TE05835	.	-	ATHATN9	HAT	DNA	245	short	12	low	2322927	chromoarm	1031	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	1291615	1293187	AT2TE05845	.	+	ATREP3	Helitron	RC	1572	short	1439	high	2318652	chromoarm	364	no-RdDM	no-CHH	ExpressedAndAnnotated	1293074	1293542	+	transcript_id-"494a70b6-9537-4ead-befa-264e95626478|4"
Chr2	1293187	1293234	AT2TE05850	.	+	HELITRONY3	Helitron	RC	47	tiny	1399	high	2318605	chromoarm	1936	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	1293564	1294497	AT2TE05855	.	-	ATLINE1A	L1	LINE	933	short	289	high	2317342	chromoarm	2313	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1294593	1295457	AT2TE05860	.	+	ATREP5	Helitron	RC	864	short	624	high	2316382	chromoarm	1703	no-RdDM	no-CHH	.	.	.	.	.
Chr2	1295462	1295598	AT2TE05865	.	+	ATREP10D	Helitron	RC	136	short	1295	high	2316241	chromoarm	1562	no-RdDM	no-CHH	.	.	.	.	.
Chr2	1297713	1297909	AT2TE05875	.	-	ATENSPM5	En-Spm	DNA	196	short	111	medium	2313930	chromoarm	170	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	1297909	1298511	AT2TE05880	.	-	ATENSPM5	En-Spm	DNA	602	short	111	medium	2313328	chromoarm	366	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	1298511	1298955	AT2TE05885	.	+	ATHILA	Gypsy	LTR	444	short	198	medium	2312884	chromoarm	968	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	1298967	1298991	AT2TE05890	.	+	ATHILA6B	Gypsy	LTR	24	tiny	134	medium	2312848	chromoarm	1424	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	1298991	1300169	AT2TE05895	.	+	ATHILA4B_LTR	Gypsy	LTR	1178	short	143	medium	2311670	chromoarm	1448	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	1300169	1300495	AT2TE05900	.	+	ATHILA6B	Gypsy	LTR	326	short	134	medium	2311344	chromoarm	2626	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	1300495	1300647	AT2TE05905	.	+	ATHILA0_I	Gypsy	LTR	152	short	138	medium	2311192	chromoarm	2952	no-RdDM	no-CHH	.	.	.	.	.
Chr2	1300851	1301489	AT2TE05910	.	-	ATGP8	Gypsy	LTR	638	short	92	medium	2310350	chromoarm	2834	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	1302327	1302350	AT2TE05915	.	-	ATREP5	Helitron	RC	23	tiny	624	high	2309489	chromoarm	1973	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr2	1302350	1303112	AT2TE05920	.	-	ATREP11	Helitron	RC	762	short	841	high	2308727	chromoarm	1211	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	1303567	1303996	AT2TE05925	.	+	ATHILA	Gypsy	LTR	429	short	198	medium	2307843	chromoarm	327	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	1303996	1304079	AT2TE05930	.	+	ATHILA6A	Gypsy	LTR	83	tiny	247	high	2307760	chromoarm	244	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	1304674	1304725	AT2TE05935	.	+	ATREP15	Helitron	RC	51	tiny	1003	high	2307114	chromoarm	0	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	1304725	1304858	AT2TE05940	.	+	HELITRONY3	Helitron	RC	133	short	1399	high	2306981	chromoarm	0	no-RdDM	no-CHH	.	.	.	.	.
Chr2	1304858	1305626	AT2TE05945	.	+	ATREP15	Helitron	RC	768	short	1003	high	2306213	chromoarm	36	no-RdDM	no-CHH	.	.	.	.	.
Chr2	1307351	1307405	AT2TE05950	.	-	ATREP19	.	DNA	54	tiny	189	medium	2304434	chromoarm	683	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1307405	1308085	AT2TE05955	.	-	BRODYAGA2	MuDR	DNA	680	short	525	high	2303754	chromoarm	3	no-RdDM	no-CHH	.	.	.	.	.
Chr2	1309707	1309802	AT2TE05960	.	+	ATDNA12T3_2	.	DNA	95	tiny	660	high	2302037	chromoarm	1163	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	1309802	1310540	AT2TE05965	.	-	ATDNA12T3_2	.	DNA	738	short	660	high	2301299	chromoarm	1258	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1311156	1311656	AT2TE05970	.	+	ATTIR16T3A	.	DNA	500	short	106	medium	2300183	chromoarm	2612	no-RdDM	no-CHH	.	.	.	.	.
Chr2	1311656	1311714	AT2TE05975	.	+	ATTIR16T3A	.	DNA	58	tiny	106	medium	2300125	chromoarm	3073	no-RdDM	no-CHH	.	.	.	.	.
Chr2	1312742	1314083	AT2TE05980	.	+	ATHAT1	HAT	DNA	1341	short	105	medium	2297756	chromoarm	704	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1314083	1314171	AT2TE05985	.	+	META1	Copia	LTR	88	tiny	138	medium	2297668	chromoarm	616	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	1314172	1314664	AT2TE05990	.	+	META1	Copia	LTR	493	short	138	medium	2297175	chromoarm	123	.	.	.	.	.	.	.
Chr2	1315238	1315822	AT2TE05995	.	+	ATREP1	Helitron	RC	584	short	498	high	2296017	chromoarm	14	no-CHH	no-CHH	.	.	.	.	.
Chr2	1317079	1317204	AT2TE06000	.	-	ATHATN2	HAT	DNA	125	short	46	low	2294635	chromoarm	783	no-CHH	no-CHH	.	.	.	.	.
Chr2	1318462	1318691	AT2TE06005	.	+	ATLINE1_6	L1	LINE	230	short	129	medium	2293148	chromoarm	2165	.	.	.	.	.	.	.
Chr2	1318872	1319412	AT2TE06010	.	-	ATREP10D	Helitron	RC	540	short	1295	high	2292427	chromoarm	2576	no-CHH	no-CHH	.	.	.	.	.
Chr2	1321601	1321646	AT2TE06020	.	-	HELITRONY1E	Helitron	RC	45	tiny	447	high	2290193	chromoarm	5305	no-CHH	no-CHH	.	.	.	.	.
Chr2	1321646	1325404	AT2TE06025	.	+	HELITRONY3	Helitron	RC	3758	medium	1399	high	2286435	chromoarm	5350	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	1325404	1325645	AT2TE06030	.	-	HELITRONY3	Helitron	RC	241	short	1399	high	2286194	chromoarm	6273	no-CHH	no-CHH	.	.	.	.	.
Chr2	1325645	1326289	AT2TE06035	.	+	ATREP10A	Helitron	RC	644	short	279	high	2285550	chromoarm	5629	no-CHH	no-CHH	.	.	.	.	.
Chr2	1326795	1330532	AT2TE06040	.	+	ATENSPM7	En-Spm	DNA	3737	medium	74	medium	2281307	chromoarm	1386	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	1330532	1331107	AT2TE06045	.	-	ATREP5	Helitron	RC	575	short	624	high	2280732	chromoarm	811	no-CHH	no-CHH	.	.	.	.	.
Chr2	1331107	1331164	AT2TE06050	.	+	ATREP3	Helitron	RC	57	tiny	1439	high	2280675	chromoarm	754	no-CHH	no-CHH	.	.	.	.	.
Chr2	1333057	1333118	AT2TE06055	.	-	RathE1_cons	.	RathE1_cons	61	tiny	213	high	2278721	chromoarm	345	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	1340522	1340882	AT2TE06090	.	+	ATREP4	Helitron	RC	360	short	832	high	2270957	chromoarm	1252	no-CHH	no-CHH	.	.	.	.	.
Chr2	1340882	1341363	AT2TE06095	.	-	HELITRONY3	Helitron	RC	481	short	1399	high	2270476	chromoarm	773	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	1341363	1341392	AT2TE06100	.	-	HELITRONY3	Helitron	RC	29	tiny	1399	high	2270447	chromoarm	744	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	1341392	1341977	AT2TE06105	.	-	HELITRONY3	Helitron	RC	585	short	1399	high	2269862	chromoarm	159	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	1341977	1342101	AT2TE06110	.	+	ATREP10D	Helitron	RC	124	short	1295	high	2269738	chromoarm	35	no-RdDM	no-CHH	.	.	.	.	.
Chr2	1346331	1346627	AT2TE06130	.	-	ATN9_1	MuDR	DNA	296	short	65	medium	2265212	chromoarm	1167	no-RdDM	no-CHH	.	.	.	.	.
Chr2	1346627	1348486	AT2TE06135	.	+	ATREP1	Helitron	RC	1859	short	498	high	2263353	chromoarm	1271	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1348486	1349078	AT2TE06140	.	+	ATREP10B	Helitron	RC	592	short	491	high	2262761	chromoarm	679	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	1349078	1349299	AT2TE06145	.	-	AT9TSD1	MuDR	DNA	221	short	55	medium	2262540	chromoarm	458	no-RdDM	no-CHH	.	.	.	.	.
Chr2	1349299	1349465	AT2TE06150	.	+	ATREP7	Helitron	RC	166	short	164	medium	2262374	chromoarm	292	no-CHH	no-CHH	.	.	.	.	.
Chr2	1349465	1349739	AT2TE06155	.	-	ATREP10D	Helitron	RC	274	short	1295	high	2262100	chromoarm	18	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	1350475	1350571	AT2TE06160	.	-	HELITRONY3	Helitron	RC	97	tiny	1399	high	2261268	chromoarm	297	.	.	.	.	.	.	.
Chr2	1351878	1352499	AT2TE06165	.	-	ATCOPIA41	Copia	LTR	621	short	39	low	2259340	chromoarm	387	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	1353348	1353629	AT2TE06170	.	-	ATSINE4	.	SINE	281	short	98	medium	2258210	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	1359728	1360147	AT2TE06200	.	+	TA1-2	Copia	LTR	419	short	.	low	2251692	chromoarm	569	no-RdDM	no-CHH	.	.	.	.	.
Chr2	1360147	1361030	AT2TE06205	.	+	ATREP3	Helitron	RC	883	short	1439	high	2250809	chromoarm	988	no-CHH	no-CHH	.	.	.	.	.
Chr2	1366151	1366784	AT2TE06230	.	-	HELITRONY3	Helitron	RC	633	short	1399	high	2245055	chromoarm	1461	no-CHH	no-CHH	.	.	.	.	.
Chr2	1366922	1368666	AT2TE06235	.	-	ATREP11	Helitron	RC	1744	short	841	high	2243173	chromoarm	2232	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1368666	1368849	AT2TE06240	.	-	ATREP4	Helitron	RC	183	short	832	high	2242990	chromoarm	3976	no-CHH	no-CHH	.	.	.	.	.
Chr2	1368849	1370370	AT2TE06245	.	+	ATREP4	Helitron	RC	1521	short	832	high	2241469	chromoarm	4159	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	1370370	1370394	AT2TE06250	.	+	BRODYAGA2	MuDR	DNA	24	tiny	525	high	2241445	chromoarm	5680	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	1370787	1371826	AT2TE06255	.	-	SIMPLEHAT2	HAT	DNA	1039	short	73	medium	2240013	chromoarm	5193	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1371864	1372073	AT2TE06260	.	-	BRODYAGA2	MuDR	DNA	209	short	525	high	2239766	chromoarm	4946	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1372073	1372514	AT2TE06265	.	+	ATREP5	Helitron	RC	441	short	624	high	2239325	chromoarm	4505	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	1372514	1372544	AT2TE06270	.	-	ATHILA4C	Gypsy	LTR	30	tiny	206	high	2239295	chromoarm	4475	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	1372544	1373218	AT2TE06275	.	-	ATHILA4	Gypsy	LTR	674	short	250	high	2238621	chromoarm	3801	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	1373218	1373364	AT2TE06280	.	+	ATLINE1A	L1	LINE	146	short	289	high	2238475	chromoarm	3655	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	1373364	1374317	AT2TE06285	.	-	ATREP4	Helitron	RC	953	short	832	high	2237522	chromoarm	2702	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	1374317	1374355	AT2TE06290	.	+	HELITRONY1D	Helitron	RC	38	tiny	756	high	2237484	chromoarm	2664	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	1374355	1374460	AT2TE06295	.	-	ATREP11	Helitron	RC	105	short	841	high	2237379	chromoarm	2559	no-CHH	DCL3-RdDM	.	.	.	.	.
Chr2	1379150	1379194	AT2TE06310	.	-	ATREP19	.	DNA	44	tiny	189	medium	2232645	chromoarm	99	no-CHH	RDR6-RdDM	.	.	.	.	.
Chr2	1379194	1379973	AT2TE06315	.	-	ATREP10B	Helitron	RC	779	short	491	high	2231866	chromoarm	143	no-CHH	no-CHH	.	.	.	.	.
Chr2	1379973	1379999	AT2TE06320	.	+	HELITRONY3	Helitron	RC	26	tiny	1399	high	2231840	chromoarm	922	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr2	1380151	1380543	AT2TE06325	.	+	ATLINE1A	L1	LINE	392	short	289	high	2231296	chromoarm	1100	no-CHH	no-CHH	.	.	.	.	.
Chr2	1380606	1381291	AT2TE06330	.	-	ATN9_1	MuDR	DNA	686	short	65	medium	2230548	chromoarm	1554	.	.	.	.	.	.	.
Chr2	1381291	1381345	AT2TE06335	.	-	ATN9_1	MuDR	DNA	54	tiny	65	medium	2230494	chromoarm	2240	no-RdDM	no-CHH	.	.	.	.	.
Chr2	1383471	1383496	AT2TE06345	.	-	HELITRONY1B	Helitron	RC	25	tiny	414	high	2228343	chromoarm	1952	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	1383514	1384426	AT2TE06350	.	-	ATREP1	Helitron	RC	912	short	498	high	2227413	chromoarm	1022	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	1384437	1385246	AT2TE06355	.	+	ATREP5	Helitron	RC	809	short	624	high	2226593	chromoarm	202	no-CHH	no-CHH	.	.	.	.	.
Chr2	1385246	1385535	AT2TE06360	.	-	ATREP10D	Helitron	RC	289	short	1295	high	2226304	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	1385881	1385950	AT2TE06365	.	-	ATREP3	Helitron	RC	69	tiny	1439	high	2225889	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	1385950	1387043	AT2TE06370	.	-	HELITRONY3	Helitron	RC	1093	short	1399	high	2224796	chromoarm	46	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	1387043	1387174	AT2TE06375	.	+	ATREP5	Helitron	RC	131	short	624	high	2224665	chromoarm	1139	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1387174	1387298	AT2TE06380	.	+	ATIS112A	Harbinger	DNA	124	short	173	medium	2224541	chromoarm	1270	no-CHH	no-CHH	ExpressedAndAnnotated	1387230,1387246,1387248	1388877,1388856,1388925	+,+,+	transcript_id-"0f9d5dbb-5b3e-414c-af74-40040a886b29|7",transcript_id-"101d2cd2-a527-437e-919b-4c9c65bb75c8|3",transcript_id-"e5c20e37-65a6-4f40-82ac-2de5e1142f80|9"
Chr2	1388715	1388831	AT2TE06385	.	-	ATCOPIA28	Copia	LTR	116	short	81	medium	2223008	chromoarm	2811	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	1388831	1393901	AT2TE06390	.	-	ATCOPIA28	Copia	LTR	5070	long	81	medium	2217938	chromoarm	2927	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	1393901	1395151	AT2TE06395	.	+	HELITRONY3	Helitron	RC	1250	short	1399	high	2216688	chromoarm	6298	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1395151	1395259	AT2TE06400	.	+	HELITRONY3	Helitron	RC	108	short	1399	high	2216580	chromoarm	6190	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1395259	1399516	AT2TE06405	.	+	META1	Copia	LTR	4257	medium	138	medium	2212323	chromoarm	1933	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	1395385	1396237	+	transcript_id-"0edc9315-710d-4b67-a9c8-bf725808cdfa|10"
Chr2	1403862	1404635	AT2TE06420	.	+	ATN9_1	MuDR	DNA	774	short	65	medium	2207204	chromoarm	0	.	.	.	.	.	.	.
Chr2	1404635	1405032	AT2TE06425	.	-	ATREP10B	Helitron	RC	397	short	491	high	2206807	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	1408933	1409367	AT2TE06435	.	+	ATDNA2T9C	MuDR	DNA	434	short	242	high	2202472	chromoarm	1239	no-CHH	no-CHH	.	.	.	.	.
Chr2	1409367	1409588	AT2TE06440	.	+	ATREP14	Helitron	RC	221	short	47	low	2202251	chromoarm	1673	no-RdDM	no-CHH	.	.	.	.	.
Chr2	1409588	1409691	AT2TE06445	.	+	ATREP2	Helitron	RC	103	short	164	medium	2202148	chromoarm	1894	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	1409691	1410522	AT2TE06450	.	+	ATREP2	Helitron	RC	831	short	164	medium	2201317	chromoarm	1997	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1410522	1410600	AT2TE06455	.	-	ATREP10B	Helitron	RC	78	tiny	491	high	2201239	chromoarm	2828	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	1410600	1410687	AT2TE06460	.	+	ATREP11	Helitron	RC	87	tiny	841	high	2201152	chromoarm	2906	no-RdDM	no-CHH	.	.	.	.	.
Chr2	1410688	1411888	AT2TE06465	.	-	ATHILA4A	Gypsy	LTR	1200	short	310	high	2199951	chromoarm	2994	no-CHH	no-CHH	.	.	.	.	.
Chr2	1412403	1413298	AT2TE06470	.	+	ATGP1	Gypsy	LTR	895	short	144	medium	2198541	chromoarm	4105	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	1413298	1413343	AT2TE06475	.	+	ATGP1	Gypsy	LTR	45	tiny	144	medium	2198496	chromoarm	4060	PolIV-and-RDR6-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	1413343	1413623	AT2TE06480	.	+	ATGP1	Gypsy	LTR	280	short	144	medium	2198216	chromoarm	3780	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	1413733	1413820	AT2TE06485	.	-	ATHPOGON3	Pogo	DNA	87	tiny	118	medium	2198019	chromoarm	3583	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1413820	1414493	AT2TE06490	.	-	ATHPOGON2	Pogo	DNA	673	short	27	low	2197346	chromoarm	2910	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1416808	1416876	AT2TE06500	.	+	ATLINE1_3A	L1	LINE	68	tiny	160	medium	2194963	chromoarm	527	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1422028	1422122	AT2TE06530	.	+	ATLINE1_4	L1	LINE	94	tiny	102	medium	2189717	chromoarm	2872	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	1422126	1422779	AT2TE06535	.	+	ATLINE1_5	L1	LINE	653	short	91	medium	2189060	chromoarm	2970	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1422779	1422845	AT2TE06540	.	+	ATLINE1_4	L1	LINE	66	tiny	102	medium	2188994	chromoarm	3623	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	1422845	1423129	AT2TE06545	.	+	ATLINE1_6	L1	LINE	284	short	129	medium	2188710	chromoarm	3689	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	1423164	1425427	AT2TE06550	.	+	ATLINE1A	L1	LINE	2263	medium	289	high	2186412	chromoarm	2166	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1426102	1426445	AT2TE06555	.	+	ATREP4	Helitron	RC	343	short	832	high	2185394	chromoarm	1148	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	1428553	1429356	AT2TE06565	.	+	ATHATN10	HAT	DNA	803	short	48	low	2182483	chromoarm	0	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1429356	1429385	AT2TE06570	.	+	ATHAT10	HAT	DNA	29	tiny	35	low	2182454	chromoarm	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	1430843	1431168	AT2TE06575	.	+	ATREP7	Helitron	RC	325	short	164	medium	2180671	chromoarm	613	no-CHH	no-CHH	.	.	.	.	.
Chr2	1431251	1431620	AT2TE06580	.	+	ATLINE1A	L1	LINE	369	short	289	high	2180219	chromoarm	1021	no-CHH	no-CHH	.	.	.	.	.
Chr2	1431649	1431743	AT2TE06585	.	-	ATDNA12T3_2	.	DNA	95	tiny	660	high	2180096	chromoarm	1418	.	.	.	.	.	.	.
Chr2	1432629	1433608	AT2TE06590	.	+	TA11	L1	LINE	979	short	157	medium	2178231	chromoarm	2399	no-CHH	no-CHH	.	.	.	.	.
Chr2	1433769	1434003	AT2TE06595	.	+	ATENSPM6	En-Spm	DNA	234	short	151	medium	2177836	chromoarm	3539	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	1434012	1434463	AT2TE06600	.	+	ATREP19	.	DNA	451	short	189	medium	2177376	chromoarm	3782	no-CHH	no-CHH	.	.	.	.	.
Chr2	1434463	1434570	AT2TE06605	.	-	BRODYAGA2	MuDR	DNA	107	short	525	high	2177269	chromoarm	4233	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	1434588	1435118	AT2TE06610	.	+	ATENSPM5	En-Spm	DNA	530	short	111	medium	2176721	chromoarm	4358	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	1434555	1437554	+	transcript_id-"ea76b853-626b-4f63-a0a4-6ee72e7cdf6a|28"
Chr2	1435118	1435378	AT2TE06615	.	+	ATENSPM9	En-Spm	DNA	260	short	97	medium	2176461	chromoarm	4888	PolIV-and-RDR6-RdDM	no-CHH	ExpressedAndAnnotated	1434555	1437554	+	transcript_id-"ea76b853-626b-4f63-a0a4-6ee72e7cdf6a|28"
Chr2	1435378	1437967	AT2TE06620	.	+	ATENSPM6	En-Spm	DNA	2589	medium	151	medium	2173872	chromoarm	5148	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	1434555	1437554	+	transcript_id-"ea76b853-626b-4f63-a0a4-6ee72e7cdf6a|28"
Chr2	1437968	1438008	AT2TE06625	.	+	ATENSPM6	En-Spm	DNA	40	tiny	151	medium	2173831	chromoarm	7392	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	1438821	1438882	AT2TE06630	.	+	BRODYAGA2	MuDR	DNA	61	tiny	525	high	2172957	chromoarm	6518	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	1438882	1438964	AT2TE06635	.	+	ATREP15	Helitron	RC	82	tiny	1003	high	2172875	chromoarm	6436	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr2	1438964	1439011	AT2TE06640	.	+	ATREP11	Helitron	RC	47	tiny	841	high	2172828	chromoarm	6389	no-CHH	no-RdDM	.	.	.	.	.
Chr2	1439011	1440420	AT2TE06645	.	-	ATREP10D	Helitron	RC	1409	short	1295	high	2171419	chromoarm	4980	no-CHH	no-CHH	.	.	.	.	.
Chr2	1440420	1440725	AT2TE06650	.	+	HELITRONY3	Helitron	RC	305	short	1399	high	2171114	chromoarm	4675	no-CHH	no-CHH	.	.	.	.	.
Chr2	1440845	1441066	AT2TE06655	.	+	ATREP15	Helitron	RC	221	short	1003	high	2170773	chromoarm	4334	no-CHH	no-CHH	.	.	.	.	.
Chr2	1441856	1442963	AT2TE06660	.	+	ATREP8	Helitron	RC	1107	short	75	medium	2168876	chromoarm	2437	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	1442963	1442993	AT2TE06665	.	+	ATREP6	Helitron	RC	30	tiny	181	medium	2168846	chromoarm	2407	PolIV-and-RDR6-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	1443863	1444044	AT2TE06670	.	-	AT9TSD1	MuDR	DNA	181	short	55	medium	2167795	chromoarm	1356	no-CHH	no-CHH	.	.	.	.	.
Chr2	1444044	1444123	AT2TE06675	.	-	ATN9_1	MuDR	DNA	79	tiny	65	medium	2167716	chromoarm	1277	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	1444123	1444870	AT2TE06680	.	-	ATN9_1	MuDR	DNA	747	short	65	medium	2166969	chromoarm	530	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	1444870	1445037	AT2TE06685	.	-	ATREP10D	Helitron	RC	167	short	1295	high	2166802	chromoarm	363	no-CHH	no-CHH	.	.	.	.	.
Chr2	1456771	1457070	AT2TE06740	.	+	ATREP10B	Helitron	RC	299	short	491	high	2154769	chromoarm	1753	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	1457070	1458341	AT2TE06745	.	+	VANDALNX2	MuDR	DNA	1271	short	37	low	2153498	chromoarm	2052	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	1458341	1461262	AT2TE06750	.	-	ATREP3	Helitron	RC	2921	medium	1439	high	2150577	chromoarm	553	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1458648	1459165	AT2TE06755	.	+	BRODYAGA2	MuDR	DNA	517	short	525	high	2152674	chromoarm	2650	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	1459165	1459213	AT2TE06760	.	+	ATREP10D	Helitron	RC	48	tiny	1295	high	2152626	chromoarm	2602	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	1459213	1459811	AT2TE06765	.	+	ATHATN7	HAT	DNA	598	short	71	medium	2152028	chromoarm	2004	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1461262	1461488	AT2TE06770	.	+	ATMU10	MuDR	DNA	226	short	87	medium	2150351	chromoarm	327	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1462964	1463245	AT2TE06775	.	-	ATREP19	.	DNA	281	short	189	medium	2148594	chromoarm	660	no-CHH	no-CHH	.	.	.	.	.
Chr2	1463245	1464538	AT2TE06780	.	-	ATREP10D	Helitron	RC	1293	short	1295	high	2147301	chromoarm	941	no-CHH	no-CHH	.	.	.	.	.
Chr2	1464640	1465329	AT2TE06785	.	+	ATHAT7	HAT	DNA	689	short	20	low	2146510	chromoarm	2336	no-RdDM	no-CHH	.	.	.	.	.
Chr2	1465607	1465773	AT2TE06790	.	-	VANDAL22	MuDR	DNA	166	short	48	low	2146066	chromoarm	3303	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1466771	1466951	AT2TE06795	.	-	VANDAL22	MuDR	DNA	180	short	48	low	2144888	chromoarm	4467	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1472014	1472097	AT2TE06820	.	+	ATENSPM4	En-Spm	DNA	83	tiny	50	medium	2139742	chromoarm	2863	no-CHH	no-CHH	.	.	.	.	.
Chr2	1473523	1473575	AT2TE06825	.	-	RathE2_cons	.	RathE2_cons	52	tiny	74	medium	2138264	chromoarm	1385	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	1482147	1482182	AT2TE06860	.	-	HELITRONY3	Helitron	RC	35	tiny	1399	high	2129657	chromoarm	164	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	1482182	1482974	AT2TE06865	.	+	VANDAL8	MuDR	DNA	792	short	123	medium	2128865	chromoarm	199	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	1482989	1483713	AT2TE06870	.	-	ATREP10D	Helitron	RC	724	short	1295	high	2128126	chromoarm	1006	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	1484109	1484259	AT2TE06875	.	+	ATREP3	Helitron	RC	151	short	1439	high	2127580	chromoarm	2125	.	.	.	.	.	.	.
Chr2	1484259	1485438	AT2TE06880	.	+	ATREP11	Helitron	RC	1179	short	841	high	2126401	chromoarm	2276	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1485440	1490713	AT2TE06885	.	-	ATLINE1_6	L1	LINE	5273	long	129	medium	2121126	chromoarm	2295	no-RdDM	no-RdDM	ExpressedAndAnnotated	1490556	1490820	+	transcript_id-"7b9d8681-f1de-4598-8414-1c82ec3f4638|3"
Chr2	1490713	1490738	AT2TE06890	.	-	ATLINE1_6	L1	LINE	25	tiny	129	medium	2121101	chromoarm	2270	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	1498931	1499393	AT2TE06930	.	+	HELITRONY3	Helitron	RC	462	short	1399	high	2112446	chromoarm	2017	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	1499393	1499926	AT2TE06935	.	+	VANDAL17	MuDR	DNA	533	short	178	medium	2111913	chromoarm	1752	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	1500804	1501182	AT2TE06940	.	-	ATIS112A	Harbinger	DNA	378	short	173	medium	2110657	chromoarm	496	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1503833	1505066	AT2TE06950	.	+	ATREP10D	Helitron	RC	1233	short	1295	high	2106773	chromoarm	385	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	1505384	1513550	AT2TE06955	.	+	VANDAL21	MuDR	DNA	8166	long	64	medium	2098289	chromoarm	860	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	1509308	1510102	+	transcript_id-"df48c3e0-a82f-4b14-9c45-db36ce1dc1eb|71"
Chr2	1521096	1521219	AT2TE06990	.	+	ATREP10B	Helitron	RC	123	short	491	high	2090620	chromoarm	66	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	1522002	1522716	AT2TE06995	.	+	ATREP15	Helitron	RC	714	short	1003	high	2089123	chromoarm	972	no-CHH	no-RdDM	.	.	.	.	.
Chr2	1523050	1523447	AT2TE07000	.	+	ATREP19	.	DNA	397	short	189	medium	2088392	chromoarm	315	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	1523783	1524096	AT2TE07005	.	-	HELITRON1	Helitron	RC	313	short	130	medium	2087743	chromoarm	0	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	1524290	1524452	AT2TE07010	.	+	HELITRONY1B	Helitron	RC	162	short	414	high	2087387	chromoarm	169	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	1524452	1524810	AT2TE07015	.	+	ATHPOGON1	Pogo	DNA	358	short	174	medium	2087029	chromoarm	331	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	1524812	1524950	AT2TE07020	.	-	ATREP5	Helitron	RC	138	short	624	high	2086889	chromoarm	689	no-CHH	DCL3-RdDM	.	.	.	.	.
Chr2	1530016	1530043	AT2TE07050	.	-	ATREP11	Helitron	RC	27	tiny	841	high	2081796	chromoarm	62	no-CHH	no-CHH	.	.	.	.	.
Chr2	1530043	1530794	AT2TE07055	.	-	HELITRONY3	Helitron	RC	751	short	1399	high	2081045	chromoarm	89	no-CHH	no-RdDM	.	.	.	.	.
Chr2	1537270	1538290	AT2TE07080	.	-	ATREP10D	Helitron	RC	1020	short	1295	high	2073549	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	1545824	1546014	AT2TE07120	.	-	ATMU3N1	MuDR	DNA	191	short	19	low	2065825	chromoarm	504	.	.	.	.	.	.	.
Chr2	1546014	1546532	AT2TE07125	.	+	SIMPLEHAT2	HAT	DNA	518	short	73	medium	2065307	chromoarm	695	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1546532	1546872	AT2TE07130	.	-	HELITRONY1C	Helitron	RC	340	short	120	medium	2064967	chromoarm	1213	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1546872	1547060	AT2TE07135	.	-	ATREP4	Helitron	RC	188	short	832	high	2064779	chromoarm	1553	no-RdDM	no-CHH	.	.	.	.	.
Chr2	1547327	1547621	AT2TE07140	.	+	BRODYAGA1A	MuDR	DNA	294	short	586	high	2064218	chromoarm	2008	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	1547660	1552033	AT2TE07145	.	-	ATCOPIA95	Copia	LTR	4373	medium	72	medium	2059806	chromoarm	2248	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	1548999,1548999,1548999,1548999	1547538,1548615,1548688,1548762	-,-,-,-	transcript_id-"5e88ee70-4a51-4780-89f6-c5fbccfd5e10|22",transcript_id-"60e774fa-839c-4733-a935-663c69ab971c|16",transcript_id-"362b3fae-1f42-41a9-b0f7-c7f5eb1f6db3|8",transcript_id-"c2491c39-67c2-4ecb-91a5-f9e854e9cc70|19"
Chr2	1552034	1552057	AT2TE07150	.	-	ATCOPIA95	Copia	LTR	24	tiny	72	medium	2059782	chromoarm	2224	.	.	.	.	.	.	.
Chr2	1552057	1552873	AT2TE07155	.	-	ATREP14	Helitron	RC	816	short	47	low	2058966	chromoarm	1408	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1552873	1553647	AT2TE07160	.	-	ATCOPIA95	Copia	LTR	774	short	72	medium	2058192	chromoarm	634	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	1556516	1556751	AT2TE07170	.	-	DT1	Mariner	DNA	235	short	123	medium	2055088	chromoarm	1002	no-CHH	no-CHH	.	.	.	.	.
Chr2	1557069	1562055	AT2TE07175	.	-	ATCOPIA61	Copia	LTR	4986	medium	12	low	2049784	chromoarm	1555	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	1562056	1562086	AT2TE07180	.	-	ATCOPIA61	Copia	LTR	30	tiny	12	low	2049753	chromoarm	2124	no-CHH	no-CHH	.	.	.	.	.
Chr2	1564986	1566207	AT2TE07190	.	-	ATHILA4	Gypsy	LTR	1221	short	250	high	2045632	chromoarm	167	no-CHH	no-CHH	.	.	.	.	.
Chr2	1567246	1567430	AT2TE07195	.	-	ATREP10B	Helitron	RC	184	short	491	high	2044409	chromoarm	1061	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1567430	1567880	AT2TE07200	.	-	BRODYAGA1A	MuDR	DNA	450	short	586	high	2043959	chromoarm	611	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1570091	1570339	AT2TE07210	.	-	ATTIRTA1	Tc1	DNA	248	short	95	medium	2041500	chromoarm	112	no-CHH	no-CHH	.	.	.	.	.
Chr2	1572435	1572659	AT2TE07220	.	-	ATREP5	Helitron	RC	224	short	624	high	2039180	chromoarm	1061	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	1572659	1573502	AT2TE07225	.	-	ATHPOGON3	Pogo	DNA	843	short	118	medium	2038337	chromoarm	218	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1573502	1573617	AT2TE07230	.	+	HELITRONY1D	Helitron	RC	115	short	756	high	2038222	chromoarm	103	no-CHH	no-CHH	.	.	.	.	.
Chr2	1575845	1576025	AT2TE07240	.	+	ATREP4	Helitron	RC	180	short	832	high	2035814	chromoarm	606	no-CHH	no-CHH	.	.	.	.	.
Chr2	1576025	1576054	AT2TE07245	.	+	ATREP9	Helitron	RC	29	tiny	201	high	2035785	chromoarm	753	no-CHH	no-CHH	.	.	.	.	.
Chr2	1576054	1576646	AT2TE07250	.	-	ATHPOGON3	Pogo	DNA	592	short	118	medium	2035193	chromoarm	161	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	1576646	1576701	AT2TE07255	.	+	HELITRONY1D	Helitron	RC	55	tiny	756	high	2035138	chromoarm	106	no-CHH	no-CHH	.	.	.	.	.
Chr2	1578893	1579048	AT2TE07265	.	+	HELITRONY1D	Helitron	RC	155	short	756	high	2032791	chromoarm	282	no-CHH	no-CHH	.	.	.	.	.
Chr2	1579075	1579435	AT2TE07270	.	+	HELITRONY1C	Helitron	RC	360	short	120	medium	2032404	chromoarm	464	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	1579435	1579480	AT2TE07275	.	+	HELITRON4	Helitron	RC	45	tiny	199	medium	2032359	chromoarm	824	PolIV-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	1580002	1581490	AT2TE07280	.	-	ATREP10B	Helitron	RC	1488	short	491	high	2030349	chromoarm	30	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	1580202	1581256	AT2TE07285	.	+	ATMUN1	MuDR	DNA	1054	short	107	medium	2030583	chromoarm	264	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	1584872	1585622	AT2TE07295	.	+	TAG3N1	HAT	DNA	750	short	97	medium	2026217	chromoarm	237	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1587375	1587642	AT2TE07300	.	+	ATLINE1A	L1	LINE	267	short	289	high	2024197	chromoarm	895	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1592950	1593214	AT2TE07330	.	+	DT1	Mariner	DNA	264	short	123	medium	2018625	chromoarm	283	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1593979	1594219	AT2TE07335	.	+	ATLINE1A	L1	LINE	240	short	289	high	2017620	chromoarm	527	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1596194	1596921	AT2TE07345	.	+	ATREP10B	Helitron	RC	727	short	491	high	2014918	chromoarm	65	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	1596921	1597493	AT2TE07350	.	+	ATREP2	Helitron	RC	572	short	164	medium	2014346	chromoarm	792	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1597493	1597567	AT2TE07355	.	-	VANDAL8	MuDR	DNA	74	tiny	123	medium	2014272	chromoarm	1364	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr2	1597567	1598651	AT2TE07360	.	-	HELITRONY3	Helitron	RC	1084	short	1399	high	2013188	chromoarm	1438	no-CHH	no-CHH	.	.	.	.	.
Chr2	1598651	1598732	AT2TE07365	.	-	ATREP3	Helitron	RC	81	tiny	1439	high	2013107	chromoarm	2522	no-CHH	no-CHH	.	.	.	.	.
Chr2	1598732	1598968	AT2TE07370	.	-	ATREP15	Helitron	RC	236	short	1003	high	2012871	chromoarm	2603	no-CHH	no-CHH	.	.	.	.	.
Chr2	1599573	1599599	AT2TE07375	.	-	ATLINE1_4	L1	LINE	26	tiny	102	medium	2012240	chromoarm	3444	no-CHH	no-CHH	.	.	.	.	.
Chr2	1599599	1600791	AT2TE07380	.	-	ATLINE1_4	L1	LINE	1192	short	102	medium	2011048	chromoarm	3470	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	1600851	1600943	AT2TE07385	.	+	RathE3_cons	.	RathE3_cons	92	tiny	104	medium	2010896	chromoarm	4722	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	1601055	1601379	AT2TE07390	.	+	ATDNA12T3_2	.	DNA	324	short	660	high	2010460	chromoarm	4926	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	1602519	1602583	AT2TE07395	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	2009256	chromoarm	6390	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1605923	1606024	AT2TE07405	.	+	ATCOPIA27	Copia	LTR	101	short	19	low	2005815	chromoarm	4481	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr2	1606984	1607032	AT2TE07410	.	-	ATCOPIA43	Copia	LTR	48	tiny	29	low	2004807	chromoarm	3473	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	1607032	1607740	AT2TE07415	.	-	ATCOPIA43	Copia	LTR	708	short	29	low	2004099	chromoarm	2765	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	1607740	1607836	AT2TE07420	.	-	ATGP5	Gypsy	LTR	96	tiny	86	medium	2004003	chromoarm	2669	no-RdDM	no-CHH	.	.	.	.	.
Chr2	1607836	1609415	AT2TE07425	.	-	ATGP5	Gypsy	LTR	1579	short	86	medium	2002424	chromoarm	1090	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	1608805	1607933	-	transcript_id-"489f6b2f-593e-4d21-9aba-f56e2467dd41|5"
Chr2	1609471	1609621	AT2TE07430	.	-	ATCOPIA43	Copia	LTR	150	short	29	low	2002218	chromoarm	884	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	1609621	1609642	AT2TE07435	.	-	ATCOPIA43	Copia	LTR	21	tiny	29	low	2002197	chromoarm	863	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	1612415	1612822	AT2TE07445	.	-	ATENSPM6	En-Spm	DNA	407	short	151	medium	1999017	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	1613118	1613707	AT2TE07450	.	+	HELITRON4	Helitron	RC	590	short	199	medium	1998132	chromoarm	0	.	.	.	.	.	.	.
Chr2	1613883	1613977	AT2TE07455	.	-	ATREP4	Helitron	RC	94	tiny	832	high	1997862	chromoarm	0	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	1613977	1617960	AT2TE07460	.	+	META1	Copia	LTR	3983	medium	138	medium	1993879	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1615284	1615439	AT2TE07465	.	-	ATHAT3	HAT	DNA	155	short	23	low	1996400	chromoarm	1265	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	1617960	1618260	AT2TE07475	.	-	HELITRONY1E	Helitron	RC	300	short	447	high	1993579	chromoarm	907	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1618260	1618288	AT2TE07480	.	-	ATREP11A	Helitron	RC	28	tiny	95	medium	1993551	chromoarm	879	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	1618339	1618423	AT2TE07485	.	-	ATLINE1_3A	L1	LINE	84	tiny	160	medium	1993416	chromoarm	744	no-CHH	no-CHH	.	.	.	.	.
Chr2	1618499	1618680	AT2TE07490	.	-	ATLINEIII	L1	LINE	181	short	196	medium	1993159	chromoarm	487	no-CHH	no-CHH	.	.	.	.	.
Chr2	1620457	1620833	AT2TE07495	.	-	ATHATN3A	HAT	DNA	376	short	20	low	1991006	chromoarm	211	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1620833	1621464	AT2TE07500	.	+	ATHATN7	HAT	DNA	631	short	71	medium	1990375	chromoarm	521	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr2	1621464	1621654	AT2TE07505	.	-	ATHATN3A	HAT	DNA	190	short	20	low	1990185	chromoarm	331	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	1629433	1629539	AT2TE07540	.	+	ATLINE1A	L1	LINE	107	short	289	high	1982300	chromoarm	393	.	.	.	.	.	.	.
Chr2	1629617	1629643	AT2TE07545	.	-	ATGP1	Gypsy	LTR	26	tiny	144	medium	1982196	chromoarm	578	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1629643	1637481	AT2TE07550	.	-	ATGP1	Gypsy	LTR	7838	long	144	medium	1974358	chromoarm	161	no-RdDM	no-RdDM	ExpressedAndAnnotated	1630662,1630657,1629972,1630662,1630662	1629702,1629703,1629742,1629853,1630002	-,-,-,-,-	transcript_id-"3392606f-8419-4141-8685-c64bda8ca7c2|10",transcript_id-"c5d4731e-82dd-4b08-b9cf-31e4de222415|10",transcript_id-"dfcae6e8-6ed4-4719-83b2-3ce019630cfe|3",transcript_id-"8327a78d-9542-4364-8e6f-b98c895bb0d2|5",transcript_id-"5f87a2ad-9bb3-4873-9bd8-e04e12596587|3"
Chr2	1638250	1639794	AT2TE07555	.	+	ATREP10D	Helitron	RC	1544	short	1295	high	1972045	chromoarm	393	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	1642130	1642168	AT2TE07565	.	-	ATREP4	Helitron	RC	38	tiny	832	high	1969671	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	1642168	1642711	AT2TE07570	.	+	ATREP5	Helitron	RC	543	short	624	high	1969128	chromoarm	7	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	1642711	1642741	AT2TE07575	.	-	ATREP4	Helitron	RC	30	tiny	832	high	1969098	chromoarm	550	no-CHH	no-CHH	.	.	.	.	.
Chr2	1642741	1642936	AT2TE07580	.	+	ATREP15	Helitron	RC	195	short	1003	high	1968903	chromoarm	580	no-CHH	no-CHH	.	.	.	.	.
Chr2	1642936	1642983	AT2TE07585	.	+	HELITRONY3	Helitron	RC	47	tiny	1399	high	1968856	chromoarm	775	no-CHH	no-CHH	.	.	.	.	.
Chr2	1642983	1643685	AT2TE07590	.	+	TNAT1A	.	DNA	702	short	162	medium	1968154	chromoarm	822	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	1643685	1643705	AT2TE07595	.	+	TNAT1A	.	DNA	20	tiny	162	medium	1968134	chromoarm	922	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	1643705	1644040	AT2TE07600	.	+	ATDNA2T9A	MuDR	DNA	335	short	48	low	1967799	chromoarm	587	no-CHH	no-CHH	.	.	.	.	.
Chr2	1644040	1644400	AT2TE07605	.	+	HELITRONY1A	Helitron	RC	360	short	271	high	1967439	chromoarm	227	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	1644400	1644434	AT2TE07610	.	+	HELITRONY1B	Helitron	RC	34	tiny	414	high	1967405	chromoarm	193	no-CHH	no-CHH	.	.	.	.	.
Chr2	1644434	1644473	AT2TE07615	.	-	ATREP3	Helitron	RC	39	tiny	1439	high	1967366	chromoarm	154	no-CHH	no-CHH	.	.	.	.	.
Chr2	1649685	1651890	AT2TE07640	.	-	ATHAT3	HAT	DNA	2205	medium	23	low	1959949	chromoarm	1340	no-RdDM	no-CHH	ExpressedAndAnnotated	1651646	1649967	-	transcript_id-"24512547-d6b7-495b-b8b5-85a7bf75f713|9"
Chr2	1652148	1652819	AT2TE07645	.	+	TNAT1A	.	DNA	671	short	162	medium	1959020	chromoarm	3803	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1652284	1652758	AT2TE07650	.	-	ATMU3N1	MuDR	DNA	475	short	19	low	1959081	chromoarm	3938	.	.	.	.	.	.	.
Chr2	1653403	1653776	AT2TE07655	.	-	ATMUNX1	MuDR	DNA	374	short	155	medium	1958063	chromoarm	3360	.	.	.	.	.	.	.
Chr2	1656120	1656411	AT2TE07665	.	-	ATCOPIA94	Copia	LTR	291	short	39	low	1955428	chromoarm	725	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	1656709	1656860	AT2TE07670	.	-	ATHILA4D_LTR	Gypsy	LTR	151	short	106	medium	1954979	chromoarm	276	no-CHH	no-CHH	.	.	.	.	.
Chr2	1662849	1663424	AT2TE07700	.	-	ATREP11	Helitron	RC	575	short	841	high	1948415	chromoarm	101	no-CHH	no-CHH	.	.	.	.	.
Chr2	1663424	1663840	AT2TE07705	.	-	ATREP10A	Helitron	RC	416	short	279	high	1947999	chromoarm	676	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1663840	1664530	AT2TE07710	.	-	ATREP10C	Helitron	RC	690	short	123	medium	1947309	chromoarm	1092	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	1664530	1664600	AT2TE07715	.	-	BRODYAGA2	MuDR	DNA	70	tiny	525	high	1947239	chromoarm	1782	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1664708	1665232	AT2TE07720	.	+	ATLINE2	L1	LINE	524	short	138	medium	1946607	chromoarm	1960	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	1665232	1668533	AT2TE07725	.	+	ATLINE2	L1	LINE	3301	medium	138	medium	1943306	chromoarm	2484	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	1668882	1668990	AT2TE07730	.	-	RathE2_cons	.	RathE2_cons	108	short	74	medium	1942849	chromoarm	6134	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	1669760	1670332	AT2TE07735	.	-	ATREP2	Helitron	RC	572	short	164	medium	1941507	chromoarm	7012	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1670332	1670443	AT2TE07740	.	-	ATREP1	Helitron	RC	111	short	498	high	1941396	chromoarm	7044	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	1670443	1672763	AT2TE07745	.	+	ATENSPM9	En-Spm	DNA	2320	medium	97	medium	1939076	chromoarm	4724	no-RdDM	no-RdDM	ExpressedAndAnnotated	1671014,1671014,1671014,1671014,1671434,1671434,1671749	1672246,1672246,1672251,1672368,1672197,1672293,1672305	+,+,+,+,+,+,+	transcript_id-"038f97db-4dc9-4e9f-800d-9472f1d52675|279",transcript_id-"c8ef9799-6c5f-45df-bca2-e559cb0aac05|81",transcript_id-"92ee7ff3-12a6-4d46-82fb-213f1ad5e186|14",transcript_id-"cb39bee5-4a54-40c3-93eb-a30a4c979979|28",transcript_id-"7c5524b4-6788-4b2a-8947-73cb17a216ca|6",transcript_id-"39365fcf-734c-482c-aa91-45553ca7b01d|4",transcript_id-"9bd8e370-02bc-4588-97d1-e10d06ef740d|5"
Chr2	1673272	1673460	AT2TE07750	.	+	HELITRONY3	Helitron	RC	188	short	1399	high	1938379	chromoarm	4027	no-CHH	no-CHH	.	.	.	.	.
Chr2	1673460	1673506	AT2TE07755	.	+	HELITRONY1D	Helitron	RC	46	tiny	756	high	1938333	chromoarm	3981	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	1673506	1673604	AT2TE07760	.	+	ATREP4	Helitron	RC	98	tiny	832	high	1938235	chromoarm	3883	no-CHH	no-RdDM	.	.	.	.	.
Chr2	1673604	1676235	AT2TE07765	.	+	ATREP10D	Helitron	RC	2631	medium	1295	high	1935604	chromoarm	1252	no-CHH	no-CHH	.	.	.	.	.
Chr2	1676334	1676512	AT2TE07770	.	-	ATLINE1A	L1	LINE	178	short	289	high	1935327	chromoarm	975	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1678418	1679012	AT2TE07775	.	-	ATREP10B	Helitron	RC	594	short	491	high	1932827	chromoarm	166	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1680469	1681002	AT2TE07780	.	+	ATREP11	Helitron	RC	533	short	841	high	1930837	chromoarm	142	no-CHH	no-CHH	.	.	.	.	.
Chr2	1681002	1681391	AT2TE07785	.	-	ATHPOGON2	Pogo	DNA	389	short	27	low	1930448	chromoarm	675	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1681391	1682511	AT2TE07790	.	-	ATREP10D	Helitron	RC	1120	short	1295	high	1929328	chromoarm	515	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1682511	1682558	AT2TE07795	.	-	META1	Copia	LTR	47	tiny	138	medium	1929281	chromoarm	468	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	1684397	1684820	AT2TE07800	.	-	ATREP3	Helitron	RC	423	short	1439	high	1927019	chromoarm	1083	no-CHH	no-CHH	.	.	.	.	.
Chr2	1684820	1686097	AT2TE07805	.	+	ATDNA2T9B	MuDR	DNA	1277	short	26	low	1925742	chromoarm	1268	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1686097	1686192	AT2TE07810	.	+	HELITRON2	Helitron	RC	95	tiny	194	medium	1925647	chromoarm	1173	no-CHH	no-CHH	.	.	.	.	.
Chr2	1691018	1691111	AT2TE07830	.	-	ATREP15	Helitron	RC	93	tiny	1003	high	1920728	chromoarm	1052	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1691111	1691137	AT2TE07835	.	+	ATREP7	Helitron	RC	26	tiny	164	medium	1920702	chromoarm	1145	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	1691138	1691343	AT2TE07840	.	+	ATREP7	Helitron	RC	206	short	164	medium	1920496	chromoarm	1171	.	.	.	.	.	.	.
Chr2	1691343	1692561	AT2TE07845	.	+	ATREP7	Helitron	RC	1218	short	164	medium	1919278	chromoarm	1377	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1693403	1693477	AT2TE07850	.	-	ATCOPIA84	Copia	LTR	74	tiny	10	low	1918362	chromoarm	1953	no-CHH	no-CHH	.	.	.	.	.
Chr2	1693477	1695271	AT2TE07855	.	-	ATCOPIA21	Copia	LTR	1794	short	14	low	1916568	chromoarm	159	no-CHH	no-CHH	.	.	.	.	.
Chr2	1701488	1702188	AT2TE07880	.	-	ATHATN3	HAT	DNA	700	short	70	medium	1909651	chromoarm	152	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1709096	1709349	AT2TE07920	.	+	ATMU10	MuDR	DNA	253	short	87	medium	1902490	chromoarm	231	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr2	1709583	1709801	AT2TE07925	.	-	ATLINE1A	L1	LINE	218	short	289	high	1902038	chromoarm	718	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1709802	1709978	AT2TE07930	.	-	ATMU7	MuDR	DNA	177	short	32	low	1901861	chromoarm	936	.	.	.	.	.	.	.
Chr2	1709978	1710601	AT2TE07935	.	+	META1	Copia	LTR	623	short	138	medium	1901238	chromoarm	1113	no-CHH	no-CHH	.	.	.	.	.
Chr2	1715079	1715729	AT2TE07950	.	-	ATLINE1_4	L1	LINE	650	short	102	medium	1896110	chromoarm	438	no-CHH	no-CHH	.	.	.	.	.
Chr2	1715793	1716096	AT2TE07955	.	+	BRODYAGA2	MuDR	DNA	303	short	525	high	1895743	chromoarm	71	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	1716427	1716448	AT2TE07960	.	+	HELITRONY3	Helitron	RC	21	tiny	1399	high	1895391	chromoarm	41	RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	1716448	1716890	AT2TE07965	.	+	ATREP11	Helitron	RC	442	short	841	high	1894949	chromoarm	62	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1716643	1716853	AT2TE07970	.	-	ATDNATA1	Mariner	DNA	211	short	28	low	1894986	chromoarm	256	.	.	.	.	.	.	.
Chr2	1716890	1717261	AT2TE07975	.	-	ATMUNX1	MuDR	DNA	371	short	155	medium	1894578	chromoarm	504	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1717261	1717540	AT2TE07980	.	-	ARNOLDY1	MuDR	DNA	279	short	237	high	1894299	chromoarm	875	no-CHH	no-CHH	.	.	.	.	.
Chr2	1725475	1726045	AT2TE08020	.	-	ATREP11	Helitron	RC	570	short	841	high	1885794	chromoarm	92	no-CHH	no-CHH	.	.	.	.	.
Chr2	1727303	1727324	AT2TE08025	.	-	ATLINE1_3A	L1	LINE	21	tiny	160	medium	1884515	chromoarm	35	no-CHH	no-CHH	.	.	.	.	.
Chr2	1727324	1727551	AT2TE08030	.	-	ATLINE1_3A	L1	LINE	227	short	160	medium	1884288	chromoarm	56	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1727849	1728277	AT2TE08035	.	-	ATCOPIA41	Copia	LTR	428	short	39	low	1883562	chromoarm	581	no-RdDM	no-CHH	.	.	.	.	.
Chr2	1728336	1728399	AT2TE08040	.	-	ATCOPIA42	Copia	LTR	63	tiny	35	low	1883440	chromoarm	1068	no-RdDM	no-CHH	.	.	.	.	.
Chr2	1728781	1729606	AT2TE08045	.	+	ATREP15	Helitron	RC	825	short	1003	high	1882233	chromoarm	158	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	1729995	1731644	AT2TE08050	.	+	ATREP10D	Helitron	RC	1649	short	1295	high	1880195	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1731645	1732119	AT2TE08055	.	-	ARNOLDY1	MuDR	DNA	474	short	237	high	1879720	chromoarm	1504	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	1733205	1733392	AT2TE08060	.	-	ATHATN5	HAT	DNA	187	short	42	low	1878447	chromoarm	245	PolIV-and-RDR6-RdDM	RDR6-RdDM	.	.	.	.	.
Chr2	1734558	1734595	AT2TE08065	.	-	HELITRONY1A	Helitron	RC	37	tiny	271	high	1877244	chromoarm	87	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	1734595	1736038	AT2TE08070	.	-	ATREP11	Helitron	RC	1443	short	841	high	1875801	chromoarm	124	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	1736038	1736157	AT2TE08075	.	-	ATREP4	Helitron	RC	119	short	832	high	1875682	chromoarm	513	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	1740511	1740573	AT2TE08090	.	-	VANDAL6	MuDR	DNA	62	tiny	89	medium	1871266	chromoarm	257	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	1740573	1740716	AT2TE08095	.	+	VANDAL7	MuDR	DNA	143	short	36	low	1871123	chromoarm	319	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	1740838	1741399	AT2TE08100	.	-	VANDAL7	MuDR	DNA	561	short	36	low	1870440	chromoarm	584	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	1741399	1741425	AT2TE08105	.	+	ATREP11	Helitron	RC	26	tiny	841	high	1870414	chromoarm	1145	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1741425	1757083	AT2TE08110	.	+	ARNOLD2	MuDR	DNA	15658	long	68	medium	1854756	chromoarm	1171	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	1741597,1746482,1748051,1747354,1751031,1751036,1756927,1752406,1756927,1756900	1745274,1745869,1747196,1747197,1748289,1748699,1751818,1752173,1752240,1754496	+,-,-,-,-,-,-,-,-,-	transcript_id-"a5e443be-adf3-475a-b4ef-12e0d0e93be3|5",transcript_id-"17938c02-7df7-4180-93bc-b3eef2a5b962|5",transcript_id-"8a97f2ad-824d-45b2-9242-fc261229d52d|4",transcript_id-"f3bae262-b876-4cc9-9784-ddeb656381a6|5",transcript_id-"7c5fca59-b496-4653-9160-5cbd9656aeb3|32",transcript_id-"31b9ba7f-9f1b-4aea-9200-06805a8c45b1|12",transcript_id-"0324426c-e67b-48a1-8f8b-1d90bfd795f5|5",transcript_id-"eceeff42-040c-459b-9b37-d4bc389d6476|15",transcript_id-"1f7f4b35-8808-4d41-a6aa-c35eff7b371b|4",transcript_id-"a6b3b397-05b1-4ded-995f-d9284073846d|3"
Chr2	1757090	1757219	AT2TE08115	.	-	VANDAL7	MuDR	DNA	129	short	36	low	1854620	chromoarm	16836	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	1757219	1757633	AT2TE08120	.	+	VANDAL7	MuDR	DNA	414	short	36	low	1854206	chromoarm	16965	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	1757143,1757144	1757660,1757594	+,+	transcript_id-"c08d1228-1eff-4182-a278-adaf6d1f5afb|3",transcript_id-"80772522-afff-41bd-9cf6-6903d5b41c26|5"
Chr2	1757633	1758395	AT2TE08125	.	-	ATREP11	Helitron	RC	762	short	841	high	1853444	chromoarm	17379	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	1758395	1758539	AT2TE08130	.	+	VANDAL7	MuDR	DNA	144	short	36	low	1853300	chromoarm	18141	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	1758539	1766569	AT2TE08135	.	-	VANDAL6	MuDR	DNA	8030	long	89	medium	1845270	chromoarm	18285	no-RdDM	no-RdDM	ExpressedAndAnnotated	1762694,1762016,1762694	1761632,1761712,1761766	-,-,-	transcript_id-"cd0881c1-3c05-4702-b326-d238812fa292|3",transcript_id-"d4289e09-3812-4997-bb8e-049568774f1d|9",transcript_id-"5cedae37-b7d2-4c89-8f3e-7fcb8a3a0442|9"
Chr2	1772224	1773634	AT2TE08160	.	+	ATIS112A	Harbinger	DNA	1410	short	173	medium	1838205	chromoarm	20400	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	1773704	1774816	AT2TE08165	.	-	VANDAL2	MuDR	DNA	1112	short	43	low	1837023	chromoarm	19218	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	1774819	1774848	AT2TE08170	.	+	ATREP10B	Helitron	RC	29	tiny	491	high	1836991	chromoarm	19186	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	1774848	1775856	AT2TE08175	.	+	ATREP15	Helitron	RC	1008	short	1003	high	1835983	chromoarm	18178	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	1775856	1776388	AT2TE08180	.	-	HELITRONY1D	Helitron	RC	532	short	756	high	1835451	chromoarm	17646	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1776388	1776704	AT2TE08185	.	-	ATDNAI27T9C	MuDR	DNA	316	short	108	medium	1835135	chromoarm	17330	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	1777028	1777227	AT2TE08190	.	-	VANDAL5A	MuDR	DNA	199	short	56	medium	1834612	chromoarm	16807	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	1777826	1777945	AT2TE08195	.	-	VANDAL5A	MuDR	DNA	119	short	56	medium	1833894	chromoarm	16089	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	1778043	1778167	AT2TE08200	.	-	LIMPET1	MuDR	DNA	124	short	116	medium	1833672	chromoarm	15867	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	1779099	1779402	AT2TE08205	.	-	ATDNAI27T9A	MuDR	DNA	303	short	116	medium	1832437	chromoarm	14632	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	1779402	1779805	AT2TE08210	.	-	ATREP11	Helitron	RC	403	short	841	high	1832034	chromoarm	14229	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1779805	1779865	AT2TE08215	.	+	ATREP19	.	DNA	60	tiny	189	medium	1831974	chromoarm	14169	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1781377	1781501	AT2TE08220	.	-	ATCOPIA57	Copia	LTR	124	short	48	low	1830338	chromoarm	12533	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	1781545	1786791	AT2TE08225	.	+	ATGP3	Gypsy	LTR	5246	long	60	medium	1825048	chromoarm	7243	no-RdDM	no-RdDM	ExpressedAndAnnotated	1781065,1781074	1781779,1781884	+,+	transcript_id-"bcb6df66-652d-4419-b0f9-d4c1a72990b1|3",transcript_id-"d2ea9feb-d677-4f07-b148-2f3d71958134|5"
Chr2	1786791	1786833	AT2TE08230	.	+	ATGP3	Gypsy	LTR	42	tiny	60	medium	1825006	chromoarm	7201	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	1786876	1788352	AT2TE08235	.	-	ATCOPIA57	Copia	LTR	1476	short	48	low	1823487	chromoarm	5682	no-RdDM	no-CHH	ExpressedAndAnnotated	1788597	1788123	-	transcript_id-"f89756f9-6df5-46d3-9544-bc9b2d4a2802|3"
Chr2	1787276	1787464	AT2TE08240	.	-	ATCOPIA36	Copia	LTR	188	short	14	low	1824375	chromoarm	6570	no-CHH	no-CHH	.	.	.	.	.
Chr2	1788707	1788795	AT2TE08245	.	-	ATREP3	Helitron	RC	88	tiny	1439	high	1823044	chromoarm	5239	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	1788795	1788910	AT2TE08250	.	-	HELITRONY1E	Helitron	RC	115	short	447	high	1822929	chromoarm	5124	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	1788910	1791547	AT2TE08255	.	-	HELITRONY1E	Helitron	RC	2637	medium	447	high	1820292	chromoarm	2487	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	1792236	1792479	AT2TE08260	.	-	ATREP7	Helitron	RC	243	short	164	medium	1819360	chromoarm	1555	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	1792479	1793634	AT2TE08265	.	-	ATREP8	Helitron	RC	1155	short	75	medium	1818205	chromoarm	400	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1793634	1793663	AT2TE08270	.	-	HELITRONY1D	Helitron	RC	29	tiny	756	high	1818176	chromoarm	371	DCL3-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	1793706	1796054	AT2TE08275	.	+	VANDAL5A	MuDR	DNA	2348	medium	56	medium	1815785	chromoarm	0	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	1796436	1796605	AT2TE08280	.	+	ATDNAI27T9B	MuDR	DNA	170	short	43	low	1815234	chromoarm	1366	.	.	.	.	.	.	.
Chr2	1797232	1797810	AT2TE08285	.	-	ATDNAI26T9	MuDR	DNA	578	short	25	low	1814029	chromoarm	344	PolIV-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	1797546	1796745	-	transcript_id-"d6ca4442-944b-4d07-af55-2b4955685ac5|3"
Chr2	1801236	1801736	AT2TE08295	.	+	HELITRONY2	Helitron	RC	500	short	198	medium	1810103	chromoarm	907	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	1801736	1803472	AT2TE08300	.	-	HARBINGER	Harbinger	DNA	1736	short	90	medium	1808367	chromoarm	1407	no-RdDM	no-RdDM	ExpressedAndAnnotated	1803720,1803754,1803715	1801885,1801885,1801892	-,-,-	transcript_id-"4c7d2c58-aa99-4a90-b32a-014bcb4032a6|24",transcript_id-"afc06987-de23-4f7f-9121-19592d58e936|3",transcript_id-"57a67466-5a1e-4129-b149-1904bf05c8c5|15"
Chr2	1802082	1802146	AT2TE08305	.	+	ATREP15	Helitron	RC	64	tiny	1003	high	1809693	chromoarm	1753	RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr2	1803532	1803765	AT2TE08310	.	-	HARBINGER	Harbinger	DNA	233	short	90	medium	1808074	chromoarm	3203	no-CHH	no-CHH	ExpressedAndAnnotated	1803720,1803754,1803715	1801885,1801885,1801892	-,-,-	transcript_id-"4c7d2c58-aa99-4a90-b32a-014bcb4032a6|24",transcript_id-"afc06987-de23-4f7f-9121-19592d58e936|3",transcript_id-"57a67466-5a1e-4129-b149-1904bf05c8c5|15"
Chr2	1803765	1804016	AT2TE08315	.	+	ATHPOGON3	Pogo	DNA	251	short	118	medium	1807823	chromoarm	3436	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	1804017	1821234	AT2TE08320	.	-	HELITRON4	Helitron	RC	17217	long	199	medium	1790605	chromoarm	2214	no-RdDM	no-RdDM	ExpressedAndAnnotated	1804762,1804763,1820731	1812005,1811074,1818047	+,+,-	transcript_id-"e2f45bf0-4121-4fc0-81b0-075158e52f89|3",transcript_id-"24ca335c-6941-499e-89b8-6024f4d4f4c0|4",transcript_id-"66773ed9-481a-4435-9dd1-e4f58978d40b|9"
Chr2	1821003	1821044	AT2TE08325	.	-	HELITRON4	Helitron	RC	41	tiny	199	medium	1790795	chromoarm	2404	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	1821234	1821392	AT2TE08330	.	-	HELITRON4	Helitron	RC	158	short	199	medium	1790447	chromoarm	2056	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1821392	1821554	AT2TE08335	.	+	ATHPOGON3	Pogo	DNA	162	short	118	medium	1790285	chromoarm	1894	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	1821580	1821855	AT2TE08340	.	-	HARBINGER	Harbinger	DNA	275	short	90	medium	1789984	chromoarm	1593	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1821855	1821975	AT2TE08345	.	-	HARBINGER	Harbinger	DNA	120	short	90	medium	1789864	chromoarm	1473	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	1824601	1824682	AT2TE08355	.	+	ATCOPIA30	Copia	LTR	81	tiny	33	low	1787157	chromoarm	270	no-CHH	no-CHH	.	.	.	.	.
Chr2	1824682	1827270	AT2TE08360	.	-	ATREP10D	Helitron	RC	2588	medium	1295	high	1784569	chromoarm	351	no-CHH	no-CHH	.	.	.	.	.
Chr2	1827270	1827626	AT2TE08365	.	-	META1	Copia	LTR	356	short	138	medium	1784213	chromoarm	2939	no-CHH	no-CHH	.	.	.	.	.
Chr2	1827626	1827653	AT2TE08370	.	+	ATREP10D	Helitron	RC	27	tiny	1295	high	1784186	chromoarm	3295	no-CHH	no-CHH	.	.	.	.	.
Chr2	1829379	1829435	AT2TE08375	.	-	TA11	L1	LINE	56	tiny	157	medium	1782404	chromoarm	5048	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	1829435	1829456	AT2TE08380	.	-	ATLINE1_6	L1	LINE	21	tiny	129	medium	1782383	chromoarm	5104	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	1829456	1832048	AT2TE08385	.	-	ATLINE1_4	L1	LINE	2592	medium	102	medium	1779791	chromoarm	5125	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	1833589	1833740	AT2TE08390	.	+	ATLINE1A	L1	LINE	151	short	289	high	1778099	chromoarm	4851	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	1840996	1841030	AT2TE08430	.	-	ATREP10D	Helitron	RC	34	tiny	1295	high	1770809	chromoarm	1038	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	1841035	1841075	AT2TE08435	.	+	HELITRONY3	Helitron	RC	40	tiny	1399	high	1770764	chromoarm	993	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	1841075	1841798	AT2TE08440	.	+	ATREP11	Helitron	RC	723	short	841	high	1770041	chromoarm	270	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	1847006	1847108	AT2TE08470	.	-	ATREP15	Helitron	RC	102	short	1003	high	1764731	chromoarm	148	no-CHH	no-CHH	.	.	.	.	.
Chr2	1847108	1847140	AT2TE08475	.	-	HELITRONY1A	Helitron	RC	32	tiny	271	high	1764699	chromoarm	250	no-CHH	no-CHH	.	.	.	.	.
Chr2	1847140	1847752	AT2TE08480	.	+	HELITRONY1A	Helitron	RC	612	short	271	high	1764087	chromoarm	282	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	1847752	1847791	AT2TE08485	.	+	HELITRONY1A	Helitron	RC	39	tiny	271	high	1764048	chromoarm	894	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr2	1848174	1848503	AT2TE08490	.	-	ATCOPIA65A	Copia	LTR	329	short	9	low	1763336	chromoarm	1316	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	1849458	1849904	AT2TE08495	.	-	ATMU2	MuDR	DNA	446	short	64	medium	1761935	chromoarm	2600	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	1850220	1850451	AT2TE08500	.	-	RathE1_cons	.	RathE1_cons	231	short	213	high	1761388	chromoarm	3362	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr2	1850451	1850484	AT2TE08505	.	-	RathE1_cons	.	RathE1_cons	33	tiny	213	high	1761355	chromoarm	3450	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	1850560	1851208	AT2TE08510	.	-	AT9MU1	MuDR	DNA	648	short	10	low	1760631	chromoarm	2726	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1850848	1851122	AT2TE08515	.	+	RP1_AT	.	DNA	274	short	87	medium	1760717	chromoarm	2812	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1856346	1856899	AT2TE08540	.	-	HELITRONY3	Helitron	RC	553	short	1399	high	1754940	chromoarm	1443	no-CHH	no-CHH	.	.	.	.	.
Chr2	1856899	1856991	AT2TE08545	.	+	ATREP10B	Helitron	RC	92	tiny	491	high	1754848	chromoarm	1996	no-RdDM	no-CHH	.	.	.	.	.
Chr2	1862376	1862442	AT2TE08570	.	-	ATREP15	Helitron	RC	66	tiny	1003	high	1749397	chromoarm	1445	no-CHH	no-CHH	.	.	.	.	.
Chr2	1862442	1865975	AT2TE08575	.	-	ATREP15	Helitron	RC	3533	medium	1003	high	1745864	chromoarm	1511	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1865975	1866064	AT2TE08580	.	-	ATREP11	Helitron	RC	89	tiny	841	high	1745775	chromoarm	3955	no-CHH	no-CHH	.	.	.	.	.
Chr2	1866064	1866089	AT2TE08585	.	-	ATREP15	Helitron	RC	25	tiny	1003	high	1745750	chromoarm	3930	no-CHH	no-CHH	.	.	.	.	.
Chr2	1866089	1866478	AT2TE08590	.	+	HELITRONY1E	Helitron	RC	389	short	447	high	1745361	chromoarm	3541	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	1868911	1869052	AT2TE08600	.	+	HELITRONY1A	Helitron	RC	141	short	271	high	1742787	chromoarm	967	PolIV-RdDM	RDR6-RdDM	.	.	.	.	.
Chr2	1869052	1869894	AT2TE08605	.	-	BRODYAGA2	MuDR	DNA	842	short	525	high	1741945	chromoarm	125	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	1878331	1878623	AT2TE08640	.	+	ATIS112A	Harbinger	DNA	292	short	173	medium	1733216	chromoarm	493	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	1879064	1880386	AT2TE08645	.	+	ATREP4	Helitron	RC	1322	short	832	high	1731453	chromoarm	1226	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1880386	1880450	AT2TE08650	.	+	BOMZH2	MuDR	DNA	64	tiny	47	low	1731389	chromoarm	2548	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	1881944	1882743	AT2TE08655	.	-	ATREP15	Helitron	RC	799	short	1003	high	1729096	chromoarm	4106	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	1882744	1883142	AT2TE08660	.	-	ATDNAI27T9C	MuDR	DNA	399	short	108	medium	1728697	chromoarm	4905	.	.	LowExpressed	.	.	.	.
Chr2	1883379	1886726	AT2TE08665	.	+	ATLINE1_6	L1	LINE	3347	medium	129	medium	1725113	chromoarm	5087	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	1887176	1887579	AT2TE08670	.	-	ATDNAI27T9C	MuDR	DNA	404	short	108	medium	1724260	chromoarm	4234	.	.	LowExpressed	.	.	.	.
Chr2	1887865	1888061	AT2TE08675	.	-	VANDAL5A	MuDR	DNA	196	short	56	medium	1723778	chromoarm	3752	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	1888647	1888783	AT2TE08680	.	-	ATDNAI27T9C	MuDR	DNA	136	short	108	medium	1723056	chromoarm	3030	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	1888879	1889003	AT2TE08685	.	-	LIMPET1	MuDR	DNA	124	short	116	medium	1722836	chromoarm	2810	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	1889937	1890242	AT2TE08690	.	-	ATDNAI27T9A	MuDR	DNA	305	short	116	medium	1721597	chromoarm	1571	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	1890242	1890698	AT2TE08695	.	+	BRODYAGA1A	MuDR	DNA	456	short	586	high	1721141	chromoarm	1115	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1895977	1896258	AT2TE08720	.	+	HELITRON1	Helitron	RC	281	short	130	medium	1715581	chromoarm	798	no-CHH	no-CHH	.	.	.	.	.
Chr2	1896271	1896539	AT2TE08725	.	-	ATREP11	Helitron	RC	268	short	841	high	1715300	chromoarm	1092	no-CHH	no-CHH	.	.	.	.	.
Chr2	1896539	1896572	AT2TE08730	.	-	HELITRON3	Helitron	RC	33	tiny	53	medium	1715267	chromoarm	1360	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	1896572	1897412	AT2TE08735	.	-	HELITRON3	Helitron	RC	840	short	53	medium	1714427	chromoarm	1393	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	1897986	1898108	AT2TE08740	.	+	ATHATN1	HAT	DNA	122	short	69	medium	1713731	chromoarm	1709	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr2	1898108	1898622	AT2TE08745	.	+	ATHATN3	HAT	DNA	514	short	70	medium	1713217	chromoarm	1195	PolIV-and-RDR6-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	1899021	1899521	AT2TE08750	.	-	ATMUN1	MuDR	DNA	501	short	107	medium	1712318	chromoarm	296	.	.	.	.	.	.	.
Chr2	1899521	1899614	AT2TE08755	.	-	ATMUN1	MuDR	DNA	93	tiny	107	medium	1712225	chromoarm	203	no-CHH	no-CHH	.	.	.	.	.
Chr2	1902751	1903923	AT2TE08765	.	+	ATREP10D	Helitron	RC	1172	short	1295	high	1707916	chromoarm	813	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1903923	1903952	AT2TE08770	.	+	ATREP3	Helitron	RC	29	tiny	1439	high	1707887	chromoarm	1985	no-CHH	no-CHH	.	.	.	.	.
Chr2	1903952	1904010	AT2TE08775	.	+	ATREP10B	Helitron	RC	58	tiny	491	high	1707829	chromoarm	2014	no-CHH	no-CHH	.	.	.	.	.
Chr2	1905594	1906142	AT2TE08780	.	+	ATHATN3	HAT	DNA	548	short	70	medium	1705697	chromoarm	3656	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1906834	1912111	AT2TE08785	.	-	ATCOPIA66	Copia	LTR	5277	long	20	low	1699728	chromoarm	1533	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	1912112	1912194	AT2TE08790	.	-	TA1_AT	Gypsy	LTR	82	tiny	3	low	1699645	chromoarm	1450	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	1921519	1925282	AT2TE08840	.	-	TA11	L1	LINE	3763	medium	157	medium	1686557	chromoarm	530	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	1925282	1926418	AT2TE08845	.	-	TA11	L1	LINE	1136	short	157	medium	1685421	chromoarm	2111	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	1926418	1926441	AT2TE08850	.	-	TA11	L1	LINE	23	tiny	157	medium	1685398	chromoarm	2088	no-CHH	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	1928661	1929400	AT2TE08860	.	+	ATREP10D	Helitron	RC	739	short	1295	high	1682439	chromoarm	39	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	1929411	1930752	AT2TE08865	.	+	HELITRONY1B	Helitron	RC	1341	short	414	high	1681087	chromoarm	789	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1930752	1930906	AT2TE08870	.	+	HELITRONY1A	Helitron	RC	154	short	271	high	1680933	chromoarm	2130	no-CHH	no-CHH	.	.	.	.	.
Chr2	1934810	1935582	AT2TE08880	.	+	ATREP11	Helitron	RC	772	short	841	high	1676257	chromoarm	433	no-CHH	no-CHH	.	.	.	.	.
Chr2	1937708	1937869	AT2TE08890	.	+	ATLINE1A	L1	LINE	161	short	289	high	1673970	chromoarm	400	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1939836	1939856	AT2TE08895	.	-	HELITRONY1B	Helitron	RC	20	tiny	414	high	1671983	chromoarm	366	no-RdDM	no-CHH	.	.	.	.	.
Chr2	1939856	1939909	AT2TE08900	.	-	HELITRONY1C	Helitron	RC	53	tiny	120	medium	1671930	chromoarm	386	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1939909	1940758	AT2TE08905	.	-	HELITRONY1D	Helitron	RC	849	short	756	high	1671081	chromoarm	439	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1940538	1940593	AT2TE08910	.	-	HELITRONY1D	Helitron	RC	55	tiny	756	high	1671246	chromoarm	1068	no-CHH	no-CHH	.	.	.	.	.
Chr2	1940868	1940965	AT2TE08915	.	-	HELITRONY1B	Helitron	RC	97	tiny	414	high	1670874	chromoarm	1398	no-CHH	no-CHH	.	.	.	.	.
Chr2	1941489	1941566	AT2TE08920	.	+	ATLINE1_3A	L1	LINE	77	tiny	160	medium	1670273	chromoarm	990	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	1941938	1942057	AT2TE08925	.	-	HELITRON3	Helitron	RC	119	short	53	medium	1669782	chromoarm	499	no-CHH	no-CHH	.	.	.	.	.
Chr2	1942124	1942219	AT2TE08930	.	-	ATHILA7A	Gypsy	LTR	95	tiny	31	low	1669620	chromoarm	337	no-CHH	no-CHH	.	.	.	.	.
Chr2	1943072	1943164	AT2TE08935	.	+	RathE1_cons	.	RathE1_cons	92	tiny	213	high	1668675	chromoarm	30	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	1946101	1946361	AT2TE08945	.	+	ATHATN1	HAT	DNA	260	short	69	medium	1665478	chromoarm	3059	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr2	1946491	1946648	AT2TE08950	.	-	ATHPOGO	Pogo	DNA	157	short	25	low	1665191	chromoarm	3449	no-CHH	no-CHH	.	.	.	.	.
Chr2	1946839	1946864	AT2TE08955	.	+	ATHILA4	Gypsy	LTR	25	tiny	250	high	1664975	chromoarm	3590	no-CHH	no-CHH	.	.	.	.	.
Chr2	1946864	1947073	AT2TE08960	.	+	ATHILA4	Gypsy	LTR	209	short	250	high	1664766	chromoarm	3381	no-CHH	no-CHH	.	.	.	.	.
Chr2	1947073	1947592	AT2TE08965	.	+	ATHILA4A	Gypsy	LTR	519	short	310	high	1664247	chromoarm	2862	no-CHH	no-CHH	.	.	.	.	.
Chr2	1947595	1949041	AT2TE08970	.	-	ATREP7	Helitron	RC	1446	short	164	medium	1662798	chromoarm	1413	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1949041	1949088	AT2TE08975	.	+	HELITRON4	Helitron	RC	47	tiny	199	medium	1662751	chromoarm	1366	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr2	1949133	1949401	AT2TE08980	.	-	DT1	Mariner	DNA	268	short	123	medium	1662438	chromoarm	1053	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	1954736	1955744	AT2TE09010	.	+	ARNOLDY2	MuDR	DNA	1008	short	288	high	1656095	chromoarm	0	no-RdDM	no-CHH	.	.	.	.	.
Chr2	1955744	1955831	AT2TE09015	.	-	ATHPOGON1	Pogo	DNA	87	tiny	174	medium	1656008	chromoarm	283	no-CHH	no-CHH	.	.	.	.	.
Chr2	1955831	1956540	AT2TE09020	.	-	ATHPOGON3	Pogo	DNA	709	short	118	medium	1655299	chromoarm	0	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1956540	1956638	AT2TE09025	.	-	ATDNA2T9C	MuDR	DNA	98	tiny	242	high	1655201	chromoarm	0	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	1961975	1962112	AT2TE09050	.	-	ATREP15	Helitron	RC	137	short	1003	high	1649727	chromoarm	550	no-CHH	no-CHH	.	.	.	.	.
Chr2	1962112	1962356	AT2TE09055	.	+	DT1	Mariner	DNA	244	short	123	medium	1649483	chromoarm	687	no-CHH	no-CHH	.	.	.	.	.
Chr2	1962356	1962412	AT2TE09060	.	+	ARNOLDY1	MuDR	DNA	56	tiny	237	high	1649427	chromoarm	931	no-CHH	no-CHH	.	.	.	.	.
Chr2	1962412	1963666	AT2TE09065	.	-	ATREP7	Helitron	RC	1254	short	164	medium	1648173	chromoarm	987	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1963666	1965808	AT2TE09070	.	+	ATHILA4A	Gypsy	LTR	2142	medium	310	high	1646031	chromoarm	1042	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1965808	1965915	AT2TE09075	.	+	ATHILA4D_LTR	Gypsy	LTR	107	short	106	medium	1645924	chromoarm	935	no-CHH	no-CHH	.	.	.	.	.
Chr2	1968286	1968946	AT2TE09085	.	-	TAG2	HAT	DNA	660	short	86	medium	1642893	chromoarm	466	RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr2	1969463	1969569	AT2TE09090	.	+	ATHILA4D_LTR	Gypsy	LTR	106	short	106	medium	1642270	chromoarm	1643	no-CHH	no-CHH	.	.	.	.	.
Chr2	1970252	1970283	AT2TE09095	.	+	ATCOPIA64	Copia	LTR	31	tiny	13	low	1641556	chromoarm	2432	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	1970283	1974992	AT2TE09100	.	+	ATCOPIA64	Copia	LTR	4709	medium	13	low	1636847	chromoarm	581	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	1976534	1976808	AT2TE09105	.	+	DT1	Mariner	DNA	274	short	123	medium	1635031	chromoarm	195	no-RdDM	no-CHH	.	.	.	.	.
Chr2	1976808	1976865	AT2TE09110	.	-	ATREP10B	Helitron	RC	57	tiny	491	high	1634974	chromoarm	469	no-CHH	no-CHH	.	.	.	.	.
Chr2	1977340	1977442	AT2TE09115	.	+	RathE3_cons	.	RathE3_cons	102	short	104	medium	1634397	chromoarm	47	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1981703	1982064	AT2TE09130	.	+	ATLANTYS3	Gypsy	LTR	361	short	142	medium	1629775	chromoarm	1836	no-CHH	no-CHH	.	.	.	.	.
Chr2	1982478	1982683	AT2TE09135	.	-	HELITRON2	Helitron	RC	205	short	194	medium	1629156	chromoarm	1217	no-RdDM	no-CHH	.	.	.	.	.
Chr2	1982791	1983132	AT2TE09140	.	+	ATSINE4	.	SINE	341	short	98	medium	1628707	chromoarm	768	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1987479	1987555	AT2TE09160	.	+	ATREP6	Helitron	RC	76	tiny	181	medium	1624284	chromoarm	378	no-CHH	no-CHH	.	.	.	.	.
Chr2	1987555	1987722	AT2TE09165	.	-	ATREP7	Helitron	RC	167	short	164	medium	1624117	chromoarm	454	no-CHH	no-CHH	.	.	.	.	.
Chr2	1987722	1989017	AT2TE09170	.	+	ATREP7	Helitron	RC	1295	short	164	medium	1622822	chromoarm	621	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1989017	1989189	AT2TE09175	.	+	ATREP19	.	DNA	172	short	189	medium	1622650	chromoarm	1916	no-CHH	no-CHH	.	.	.	.	.
Chr2	1989189	1989871	AT2TE09180	.	+	ATLINE1_1	L1	LINE	682	short	61	medium	1621968	chromoarm	2088	no-CHH	no-CHH	.	.	.	.	.
Chr2	1990380	1990559	AT2TE09185	.	+	BRODYAGA2	MuDR	DNA	179	short	525	high	1621280	chromoarm	2574	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	1990559	1991386	AT2TE09190	.	+	BRODYAGA2	MuDR	DNA	827	short	525	high	1620453	chromoarm	1747	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	1992558	1992812	AT2TE09195	.	-	ATMU10	MuDR	DNA	254	short	87	medium	1619027	chromoarm	321	no-CHH	no-CHH	.	.	.	.	.
Chr2	1995887	2010496	AT2TE09205	.	-	VANDAL1	MuDR	DNA	14609	long	80	medium	1601343	chromoarm	1931	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	2010496	2010533	AT2TE09210	.	-	VANDAL1	MuDR	DNA	37	tiny	80	medium	1601306	chromoarm	3834	no-RdDM	no-CHH	.	.	.	.	.
Chr2	2010533	2010652	AT2TE09215	.	+	RathE1_cons	.	RathE1_cons	119	short	213	high	1601187	chromoarm	3715	no-RdDM	no-CHH	.	.	.	.	.
Chr2	2010682	2011030	AT2TE09220	.	-	ATDNA12T3_2	.	DNA	348	short	660	high	1600809	chromoarm	3337	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2012956	2013344	AT2TE09225	.	-	ATCOPIA42	Copia	LTR	388	short	35	low	1598495	chromoarm	1023	no-CHH	no-CHH	.	.	.	.	.
Chr2	2013344	2013393	AT2TE09230	.	-	ATCOPIA42	Copia	LTR	49	tiny	35	low	1598446	chromoarm	974	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	2013393	2013503	AT2TE09235	.	-	ATCOPIA42	Copia	LTR	110	short	35	low	1598336	chromoarm	864	no-CHH	no-CHH	.	.	.	.	.
Chr2	2014818	2015001	AT2TE09240	.	+	ATSINE4	.	SINE	183	short	98	medium	1596838	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2016662	2016957	AT2TE09245	.	-	ATREP10D	Helitron	RC	295	short	1295	high	1594882	chromoarm	135	no-CHH	no-CHH	.	.	.	.	.
Chr2	2016957	2017516	AT2TE09250	.	-	HELITRONY3	Helitron	RC	559	short	1399	high	1594323	chromoarm	430	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	2017685	2018551	AT2TE09255	.	+	ATREP10B	Helitron	RC	866	short	491	high	1593288	chromoarm	1158	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	2019322	2019494	AT2TE09260	.	+	HELITRON1	Helitron	RC	172	short	130	medium	1592345	chromoarm	2795	no-RdDM	no-CHH	.	.	.	.	.
Chr2	2019688	2019784	AT2TE09265	.	-	ATREP3	Helitron	RC	96	tiny	1439	high	1592055	chromoarm	3161	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	2019784	2020922	AT2TE09270	.	-	ATREP10D	Helitron	RC	1138	short	1295	high	1590917	chromoarm	3257	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr2	2020922	2020957	AT2TE09275	.	+	ATREP3	Helitron	RC	35	tiny	1439	high	1590882	chromoarm	4395	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	2021015	2022558	AT2TE09280	.	-	ATLINE1A	L1	LINE	1543	short	289	high	1589281	chromoarm	3658	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2024938	2025005	AT2TE09290	.	+	HELITRONY3	Helitron	RC	67	tiny	1399	high	1586834	chromoarm	1211	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	2025005	2025915	AT2TE09295	.	+	HELITRONY3	Helitron	RC	910	short	1399	high	1585924	chromoarm	301	no-CHH	no-CHH	.	.	.	.	.
Chr2	2027257	2028132	AT2TE09300	.	-	HELITRONY3	Helitron	RC	875	short	1399	high	1583707	chromoarm	375	no-CHH	no-CHH	.	.	.	.	.
Chr2	2028132	2028156	AT2TE09305	.	-	ATREP10B	Helitron	RC	24	tiny	491	high	1583683	chromoarm	1250	no-CHH	no-CHH	.	.	.	.	.
Chr2	2028156	2028184	AT2TE09310	.	-	ATREP11	Helitron	RC	28	tiny	841	high	1583655	chromoarm	1274	no-CHH	no-CHH	.	.	.	.	.
Chr2	2028235	2028479	AT2TE09315	.	+	ATLINE1_3A	L1	LINE	244	short	160	medium	1583360	chromoarm	1275	no-CHH	no-CHH	.	.	.	.	.
Chr2	2030995	2032040	AT2TE09325	.	+	VANDAL1	MuDR	DNA	1045	short	80	medium	1579799	chromoarm	675	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	2034040	2034070	AT2TE09335	.	+	BRODYAGA1	MuDR	DNA	30	tiny	251	high	1577769	chromoarm	62	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	2034071	2034139	AT2TE09340	.	+	BRODYAGA1A	MuDR	DNA	69	tiny	586	high	1577700	chromoarm	92	.	.	LowExpressed	.	.	.	.
Chr2	2034139	2035218	AT2TE09345	.	+	BRODYAGA1A	MuDR	DNA	1079	short	586	high	1576621	chromoarm	161	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	2035218	2035350	AT2TE09350	.	-	BRODYAGA1A	MuDR	DNA	132	short	586	high	1576489	chromoarm	1240	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	2035350	2035686	AT2TE09355	.	-	BRODYAGA1	MuDR	DNA	336	short	251	high	1576153	chromoarm	1372	no-CHH	no-CHH	.	.	.	.	.
Chr2	2035933	2041281	AT2TE09360	.	-	ATLINEIII	L1	LINE	5348	long	196	medium	1570558	chromoarm	1955	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2041406	2041435	AT2TE09365	.	-	ATN9_1	MuDR	DNA	29	tiny	65	medium	1570404	chromoarm	7428	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2041435	2041932	AT2TE09370	.	-	ATN9_1	MuDR	DNA	497	short	65	medium	1569907	chromoarm	7457	no-RdDM	no-CHH	.	.	.	.	.
Chr2	2041963	2054217	AT2TE09375	.	-	VANDAL2	MuDR	DNA	12254	long	43	low	1557622	chromoarm	1360	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	2047715	2048547	+	transcript_id-"201e7be2-5cc2-41fe-b356-721a0d1fbd94|30"
Chr2	2055856	2056369	AT2TE09380	.	-	VANDAL17	MuDR	DNA	513	short	178	medium	1555470	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	2057538	2057978	AT2TE09385	.	-	HELITRON2	Helitron	RC	440	short	194	medium	1553861	chromoarm	975	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2057978	2058044	AT2TE09390	.	-	HELITRONY1A	Helitron	RC	66	tiny	271	high	1553795	chromoarm	1415	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2058044	2059187	AT2TE09395	.	-	ATREP6	Helitron	RC	1143	short	181	medium	1552652	chromoarm	1481	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2059201	2059642	AT2TE09400	.	+	ATREP10D	Helitron	RC	441	short	1295	high	1552197	chromoarm	2638	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2059914	2060025	AT2TE09405	.	-	TNAT2A	.	DNA	111	short	38	low	1551814	chromoarm	3351	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2061855	2062677	AT2TE09410	.	-	ATLINE1A	L1	LINE	822	short	289	high	1549162	chromoarm	4518	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	2062957	2063330	AT2TE09415	.	-	ATREP3	Helitron	RC	373	short	1439	high	1548509	chromoarm	3865	no-RdDM	no-CHH	.	.	.	.	.
Chr2	2063330	2063901	AT2TE09420	.	+	ATREP15	Helitron	RC	571	short	1003	high	1547938	chromoarm	3294	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	2064980	2065081	AT2TE09425	.	-	ARNOLDY1	MuDR	DNA	102	short	237	high	1546758	chromoarm	2114	.	.	.	.	.	.	.
Chr2	2065088	2066950	AT2TE09430	.	-	HELITRONY3	Helitron	RC	1862	short	1399	high	1544889	chromoarm	245	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2066149	2066184	AT2TE09435	.	-	ARNOLDY2	MuDR	DNA	35	tiny	288	high	1545655	chromoarm	1011	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	2066950	2067017	AT2TE09440	.	+	ATREP10D	Helitron	RC	67	tiny	1295	high	1544822	chromoarm	178	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2067017	2067047	AT2TE09445	.	+	HELITRONY3	Helitron	RC	30	tiny	1399	high	1544792	chromoarm	148	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	2067047	2067091	AT2TE09450	.	-	ATREP4	Helitron	RC	44	tiny	832	high	1544748	chromoarm	104	no-CHH	no-CHH	.	.	.	.	.
Chr2	2074040	2075017	AT2TE09490	.	+	ATLINE1A	L1	LINE	977	short	289	high	1536822	chromoarm	493	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	2075017	2075338	AT2TE09495	.	-	ATREP10D	Helitron	RC	321	short	1295	high	1536501	chromoarm	1470	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	2075338	2080607	AT2TE09500	.	-	ATGP3	Gypsy	LTR	5269	long	60	medium	1531232	chromoarm	596	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	2082006	2082129	AT2TE09505	.	-	ATHATN6	HAT	DNA	123	short	43	low	1529710	chromoarm	319	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2082514	2082737	AT2TE09510	.	+	HELITRON1	Helitron	RC	223	short	130	medium	1529102	chromoarm	473	PolIV-and-RDR6-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	2084820	2084866	AT2TE09520	.	+	HELITRONY3	Helitron	RC	46	tiny	1399	high	1526973	chromoarm	45	no-CHH	no-CHH	.	.	.	.	.
Chr2	2084866	2085001	AT2TE09525	.	-	ATREP5	Helitron	RC	135	short	624	high	1526838	chromoarm	91	no-CHH	no-CHH	.	.	.	.	.
Chr2	2085001	2085343	AT2TE09530	.	+	ATREP10D	Helitron	RC	342	short	1295	high	1526496	chromoarm	226	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2085343	2085586	AT2TE09535	.	+	DT1	Mariner	DNA	243	short	123	medium	1526253	chromoarm	568	no-CHH	no-CHH	.	.	.	.	.
Chr2	2085587	2086346	AT2TE09540	.	+	ATN9_1	MuDR	DNA	760	short	65	medium	1525493	chromoarm	811	.	.	.	.	.	.	.
Chr2	2086353	2086505	AT2TE09545	.	-	ATN9_1	MuDR	DNA	152	short	65	medium	1525334	chromoarm	1238	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2086505	2086979	AT2TE09550	.	+	HELITRONY1A	Helitron	RC	474	short	271	high	1524860	chromoarm	764	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2088276	2088696	AT2TE09555	.	+	ATREP3	Helitron	RC	420	short	1439	high	1523143	chromoarm	374	no-CHH	no-CHH	.	.	.	.	.
Chr2	2091083	2092826	AT2TE09565	.	-	HELITRON2	Helitron	RC	1743	short	194	medium	1519013	chromoarm	629	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	2092826	2096399	AT2TE09570	.	-	HELITRON5	Helitron	RC	3573	medium	56	medium	1515440	chromoarm	1853	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	2093413	2094320	AT2TE09575	.	-	HELITRON4	Helitron	RC	907	short	199	medium	1517519	chromoarm	2959	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	2096399	2096462	AT2TE09585	.	-	HELITRON1	Helitron	RC	63	tiny	130	medium	1515377	chromoarm	1790	no-RdDM	no-CHH	.	.	.	.	.
Chr2	2101050	2101414	AT2TE09600	.	-	ATREP12	Helitron	RC	364	short	22	low	1510425	chromoarm	82	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	2102764	2103473	AT2TE09605	.	+	ATREP10B	Helitron	RC	709	short	491	high	1508366	chromoarm	653	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2104400	2104635	AT2TE09610	.	-	ATENSPM9	En-Spm	DNA	235	short	97	medium	1507204	chromoarm	2289	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	2104850	2105072	AT2TE09615	.	+	ATENSPM9	En-Spm	DNA	222	short	97	medium	1506767	chromoarm	2739	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	2105605	2105629	AT2TE09620	.	+	ATHILA4A	Gypsy	LTR	24	tiny	310	high	1506210	chromoarm	3494	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2105629	2106808	AT2TE09625	.	+	ATHILA4D_LTR	Gypsy	LTR	1179	short	106	medium	1505031	chromoarm	3518	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2109884	2110083	AT2TE09635	.	-	ATENSPM3	En-Spm	DNA	199	short	98	medium	1501756	chromoarm	7773	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	2110458	2109766	-	transcript_id-"1a280e87-4f1a-4410-9611-f6dcedab7f22|6"
Chr2	2110083	2114697	AT2TE09640	.	-	ATENSPM7	En-Spm	DNA	4614	medium	74	medium	1497142	chromoarm	7972	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	2110458	2109766	-	transcript_id-"1a280e87-4f1a-4410-9611-f6dcedab7f22|6"
Chr2	2114697	2114875	AT2TE09645	.	-	ATENSPM7	En-Spm	DNA	178	short	74	medium	1496964	chromoarm	12586	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	2115378	2115742	AT2TE09650	.	-	ATHILA4	Gypsy	LTR	364	short	250	high	1496097	chromoarm	13267	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	2116784	2116884	AT2TE09655	.	-	ATHILA8A	Gypsy	LTR	100	short	97	medium	1494955	chromoarm	14673	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	2117333	2118833	AT2TE09660	.	-	HELITRONY1C	Helitron	RC	1500	short	120	medium	1493006	chromoarm	15222	no-RdDM	no-CHH	.	.	.	.	.
Chr2	2118833	2119213	AT2TE09665	.	+	ATREP10B	Helitron	RC	380	short	491	high	1492626	chromoarm	16722	no-CHH	no-CHH	.	.	.	.	.
Chr2	2119213	2119307	AT2TE09670	.	+	ATREP4	Helitron	RC	94	tiny	832	high	1492532	chromoarm	17102	no-CHH	no-CHH	.	.	.	.	.
Chr2	2119307	2119463	AT2TE09675	.	-	HELITRONY1B	Helitron	RC	156	short	414	high	1492376	chromoarm	17196	no-CHH	no-CHH	.	.	.	.	.
Chr2	2121051	2121245	AT2TE09680	.	-	HELITRON4	Helitron	RC	194	short	199	medium	1490594	chromoarm	18940	no-CHH	no-CHH	.	.	.	.	.
Chr2	2121885	2129089	AT2TE09685	.	-	VANDAL3	MuDR	DNA	7204	long	177	medium	1482750	pericentromeric	12501	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	2129091	2129181	AT2TE09690	.	-	ATREP10B	Helitron	RC	90	tiny	491	high	1482658	pericentromeric	12409	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2129181	2130219	AT2TE09695	.	-	ATREP3	Helitron	RC	1038	short	1439	high	1481620	pericentromeric	11371	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	2130219	2130244	AT2TE09700	.	-	BRODYAGA1A	MuDR	DNA	25	tiny	586	high	1481595	pericentromeric	11346	no-CHH	no-CHH	.	.	.	.	.
Chr2	2130244	2130570	AT2TE09705	.	+	HELITRONY3	Helitron	RC	326	short	1399	high	1481269	pericentromeric	11020	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2131034	2133043	AT2TE09710	.	-	ATREP10D	Helitron	RC	2009	medium	1295	high	1478796	pericentromeric	8547	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	2133043	2133089	AT2TE09715	.	+	ATHPOGON2	Pogo	DNA	46	tiny	27	low	1478750	pericentromeric	8501	no-CHH	no-CHH	.	.	.	.	.
Chr2	2133089	2134050	AT2TE09720	.	+	ATHAT2	HAT	DNA	961	short	19	low	1477789	pericentromeric	7540	no-RdDM	no-CHH	ExpressedAndAnnotated	2133673	2136974	+	transcript_id-"8656eaed-788d-47e4-8e4e-911a649bebea|6"
Chr2	2134050	2134368	AT2TE09725	.	+	ATHAT2	HAT	DNA	318	short	19	low	1477471	pericentromeric	7222	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr2	2134403	2134452	AT2TE09730	.	+	ATHAT2	HAT	DNA	49	tiny	19	low	1477387	pericentromeric	7138	no-RdDM	no-CHH	.	.	.	.	.
Chr2	2134452	2137255	AT2TE09735	.	+	ATHAT2	HAT	DNA	2803	medium	19	low	1474584	pericentromeric	4335	no-RdDM	no-RdDM	ExpressedAndAnnotated	2133673	2136974	+	transcript_id-"8656eaed-788d-47e4-8e4e-911a649bebea|6"
Chr2	2137255	2137625	AT2TE09740	.	+	ATHPOGON3	Pogo	DNA	370	short	118	medium	1474214	pericentromeric	3965	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2137646	2138076	AT2TE09745	.	+	ATHILA4A	Gypsy	LTR	430	short	310	high	1473763	pericentromeric	3514	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2138076	2138122	AT2TE09750	.	-	VANDAL18	MuDR	DNA	46	tiny	14	low	1473717	pericentromeric	3468	no-CHH	no-CHH	.	.	.	.	.
Chr2	2138134	2138396	AT2TE09755	.	-	HELITRONY1E	Helitron	RC	262	short	447	high	1473443	pericentromeric	3194	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	2138396	2139390	AT2TE09760	.	+	ATREP2	Helitron	RC	994	short	164	medium	1472449	pericentromeric	2200	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2139391	2139870	AT2TE09765	.	-	ATREP6	Helitron	RC	480	short	181	medium	1471969	pericentromeric	1720	.	.	.	.	.	.	.
Chr2	2139870	2139930	AT2TE09770	.	-	ATREP6	Helitron	RC	60	tiny	181	medium	1471909	pericentromeric	1660	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2139930	2139974	AT2TE09775	.	-	ATREP8	Helitron	RC	44	tiny	75	medium	1471865	pericentromeric	1616	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	2139988	2140023	AT2TE09780	.	+	HELITRONY3	Helitron	RC	35	tiny	1399	high	1471816	pericentromeric	1567	no-CHH	no-CHH	.	.	.	.	.
Chr2	2140023	2140750	AT2TE09785	.	-	ATREP6	Helitron	RC	727	short	181	medium	1471089	pericentromeric	840	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2140750	2141033	AT2TE09790	.	-	ATN9_1	MuDR	DNA	283	short	65	medium	1470806	pericentromeric	557	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2141034	2141111	AT2TE09795	.	-	ATREP6	Helitron	RC	78	tiny	181	medium	1470728	pericentromeric	479	.	.	.	.	.	.	.
Chr2	2141111	2141302	AT2TE09800	.	-	HELITRONY1B	Helitron	RC	191	short	414	high	1470537	pericentromeric	288	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2141302	2141364	AT2TE09805	.	+	HELITRONY1E	Helitron	RC	62	tiny	447	high	1470475	pericentromeric	226	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr2	2148928	2149082	AT2TE09840	.	+	ATDNA1T9A	MuDR	DNA	154	short	36	low	1462757	pericentromeric	713	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2149359	2149471	AT2TE09845	.	-	ATENSPM7	En-Spm	DNA	112	short	74	medium	1462368	pericentromeric	1144	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2149471	2149863	AT2TE09850	.	-	ATREP7	Helitron	RC	392	short	164	medium	1461976	pericentromeric	1256	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	2149863	2149915	AT2TE09855	.	+	AT9NMU1	MuDR	DNA	52	tiny	45	low	1461924	pericentromeric	1648	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr2	2149915	2149945	AT2TE09860	.	+	AT9NMU1	MuDR	DNA	30	tiny	45	low	1461894	pericentromeric	1700	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2149945	2150864	AT2TE09865	.	+	AT9NMU1	MuDR	DNA	919	short	45	low	1460975	pericentromeric	1730	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2153416	2153742	AT2TE09875	.	-	ATREP11	Helitron	RC	326	short	841	high	1458097	pericentromeric	5201	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	2153742	2153888	AT2TE09880	.	+	ATREP4	Helitron	RC	146	short	832	high	1457951	pericentromeric	5527	no-CHH	no-CHH	.	.	.	.	.
Chr2	2153888	2157853	AT2TE09885	.	+	ATREP11	Helitron	RC	3965	medium	841	high	1453986	pericentromeric	5673	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	2151472	2155093	+	transcript_id-"7fa0aadd-d1f4-4acf-9c31-0f94a112fc2b|4"
Chr2	2154869	2155879	AT2TE09890	.	-	VANDAL3	MuDR	DNA	1010	short	177	medium	1455960	pericentromeric	6654	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	2151472	2155093	+	transcript_id-"7fa0aadd-d1f4-4acf-9c31-0f94a112fc2b|4"
Chr2	2156281	2156452	AT2TE09895	.	+	ATDNA1T9A	MuDR	DNA	171	short	36	low	1455387	pericentromeric	8066	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2157853	2158001	AT2TE09900	.	+	ATREP10D	Helitron	RC	148	short	1295	high	1453838	pericentromeric	9638	no-RdDM	no-CHH	.	.	.	.	.
Chr2	2158737	2158784	AT2TE09905	.	-	ATREP10B	Helitron	RC	47	tiny	491	high	1453055	pericentromeric	10520	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2158784	2160189	AT2TE09910	.	-	ATREP10D	Helitron	RC	1405	short	1295	high	1451650	pericentromeric	9115	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	2160189	2160399	AT2TE09915	.	+	ATREP4	Helitron	RC	210	short	832	high	1451440	pericentromeric	8905	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	2160399	2160442	AT2TE09920	.	+	VANDAL1N1	MuDR	DNA	43	tiny	52	medium	1451397	pericentromeric	8862	no-RdDM	no-CHH	.	.	.	.	.
Chr2	2160789	2161355	AT2TE09925	.	+	VANDAL8	MuDR	DNA	566	short	123	medium	1450484	pericentromeric	7949	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	2161492	2161531	AT2TE09930	.	+	HELITRONY3	Helitron	RC	39	tiny	1399	high	1450308	pericentromeric	7773	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2161532	2161592	AT2TE09935	.	-	ATLINE1A	L1	LINE	61	tiny	289	high	1450247	pericentromeric	7712	.	.	.	.	.	.	.
Chr2	2161652	2162273	AT2TE09940	.	+	HELITRON4	Helitron	RC	621	short	199	medium	1449566	pericentromeric	7031	no-CHH	no-CHH	.	.	.	.	.
Chr2	2162273	2162294	AT2TE09945	.	-	ATREP15	Helitron	RC	21	tiny	1003	high	1449545	pericentromeric	7010	no-CHH	no-CHH	.	.	.	.	.
Chr2	2162294	2162937	AT2TE09950	.	-	HELITRONY3	Helitron	RC	643	short	1399	high	1448902	pericentromeric	6367	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2164242	2167690	AT2TE09955	.	+	ATENSPM2	En-Spm	DNA	3448	medium	114	medium	1444149	pericentromeric	1614	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	2168618	2168772	AT2TE09960	.	-	VANDAL8	MuDR	DNA	154	short	123	medium	1443067	pericentromeric	532	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2173809	2174171	AT2TE09990	.	+	HELITRONY1D	Helitron	RC	362	short	756	high	1437668	pericentromeric	163	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	2174173	2174242	AT2TE09995	.	-	ATREP15	Helitron	RC	69	tiny	1003	high	1437597	pericentromeric	527	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr2	2174242	2174522	AT2TE10000	.	-	ATREP15	Helitron	RC	280	short	1003	high	1437317	pericentromeric	596	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2174522	2177129	AT2TE10005	.	-	ATREP15	Helitron	RC	2607	medium	1003	high	1434710	pericentromeric	876	no-CHH	no-CHH	.	.	.	.	.
Chr2	2177129	2177749	AT2TE10010	.	+	ATREP5	Helitron	RC	620	short	624	high	1434090	pericentromeric	3228	no-RdDM	no-CHH	.	.	.	.	.
Chr2	2177749	2177892	AT2TE10015	.	-	HELITRONY1D	Helitron	RC	143	short	756	high	1433947	pericentromeric	3085	no-CHH	no-CHH	.	.	.	.	.
Chr2	2177892	2178033	AT2TE10020	.	+	ATREP3	Helitron	RC	141	short	1439	high	1433806	pericentromeric	2944	no-CHH	no-CHH	.	.	.	.	.
Chr2	2178033	2178820	AT2TE10025	.	+	TNAT2A	.	DNA	787	short	38	low	1433019	pericentromeric	2157	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2180003	2180354	AT2TE10030	.	-	HELITRONY1A	Helitron	RC	351	short	271	high	1431485	pericentromeric	623	no-CHH	no-CHH	.	.	.	.	.
Chr2	2180354	2180570	AT2TE10035	.	-	HELITRON4	Helitron	RC	216	short	199	medium	1431269	pericentromeric	407	no-CHH	no-CHH	.	.	.	.	.
Chr2	2180856	2180963	AT2TE10040	.	+	ARNOLD2	MuDR	DNA	107	short	68	medium	1430876	pericentromeric	14	no-CHH	no-CHH	.	.	.	.	.
Chr2	2186855	2187197	AT2TE10070	.	-	SIMPLEGUY1	Harbinger	DNA	342	short	116	medium	1424642	pericentromeric	3145	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	2187309	2188592	AT2TE10075	.	-	HARBINGER	Harbinger	DNA	1283	short	90	medium	1423247	pericentromeric	3599	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	2191056	2191575	AT2TE10085	.	+	ATGP10	Gypsy	LTR	519	short	165	medium	1420264	pericentromeric	6695	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	2191575	2192438	AT2TE10090	.	-	HARBINGER	Harbinger	DNA	863	short	90	medium	1419401	pericentromeric	5832	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	2192438	2192500	AT2TE10095	.	+	ATREP4	Helitron	RC	62	tiny	832	high	1419339	pericentromeric	5770	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	2192500	2193620	AT2TE10100	.	+	ATREP10D	Helitron	RC	1120	short	1295	high	1418219	pericentromeric	4650	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	2193620	2195420	AT2TE10105	.	-	ATLINE1_5	L1	LINE	1800	short	91	medium	1416419	pericentromeric	2850	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	2195657	2195907	AT2TE10110	.	-	ATLINE1_4	L1	LINE	250	short	102	medium	1415932	pericentromeric	2363	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	2195961	2196827	AT2TE10115	.	-	ATMU4	MuDR	DNA	866	short	14	low	1415012	pericentromeric	1443	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	2196827	2196904	AT2TE10120	.	-	ATMU3	MuDR	DNA	77	tiny	15	low	1414935	pericentromeric	1366	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	2197087	2197121	AT2TE10125	.	+	ATREP19	.	DNA	34	tiny	189	medium	1414718	pericentromeric	1149	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2197121	2198179	AT2TE10130	.	-	HELITRONY1E	Helitron	RC	1058	short	447	high	1413660	pericentromeric	91	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2198179	2198230	AT2TE10135	.	+	ATREP3	Helitron	RC	51	tiny	1439	high	1413609	pericentromeric	40	no-CHH	no-CHH	.	.	.	.	.
Chr2	2203889	2205314	AT2TE10160	.	+	VANDAL18	MuDR	DNA	1425	short	14	low	1406525	pericentromeric	2596	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	2205314	2205355	AT2TE10165	.	+	VANDAL18	MuDR	DNA	41	tiny	14	low	1406484	pericentromeric	3341	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	2205355	2205746	AT2TE10170	.	+	VANDAL4	MuDR	DNA	391	short	102	medium	1406093	pericentromeric	2950	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	2209831	2210864	AT2TE10190	.	-	BOMZH1	MuDR	DNA	1033	short	28	low	1400975	pericentromeric	997	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2210987	2211062	AT2TE10195	.	+	BRODYAGA1A	MuDR	DNA	75	tiny	586	high	1400777	pericentromeric	2153	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	2211062	2212136	AT2TE10200	.	-	BRODYAGA1A	MuDR	DNA	1074	short	586	high	1399703	pericentromeric	2228	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2212142	2212236	AT2TE10205	.	-	BRODYAGA1	MuDR	DNA	94	tiny	251	high	1399603	pericentromeric	2988	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2212826	2213371	AT2TE10210	.	+	ATHATN10	HAT	DNA	545	short	48	low	1398468	pericentromeric	1853	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	2213851	2214261	AT2TE10215	.	+	ATREP9	Helitron	RC	410	short	201	high	1397578	pericentromeric	963	PolIV-and-RDR6-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	2217272	2217386	AT2TE10225	.	+	ATDNAI27T9A	MuDR	DNA	114	short	116	medium	1394453	pericentromeric	305	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2217433	2218007	AT2TE10230	.	+	LIMPET1	MuDR	DNA	574	short	116	medium	1393832	pericentromeric	466	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	2218082	2218105	AT2TE10235	.	+	VANDAL5A	MuDR	DNA	23	tiny	56	medium	1393734	pericentromeric	1115	no-CHH	no-CHH	.	.	.	.	.
Chr2	2218105	2218470	AT2TE10240	.	+	VANDAL5A	MuDR	DNA	365	short	56	medium	1393369	pericentromeric	1138	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2218691	2218921	AT2TE10245	.	+	ATDNAI27T9C	MuDR	DNA	231	short	108	medium	1392918	pericentromeric	1723	.	.	.	.	.	.	.
Chr2	2218921	2218964	AT2TE10250	.	-	HELITRONY1A	Helitron	RC	43	tiny	271	high	1392875	pericentromeric	1954	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2218964	2220284	AT2TE10255	.	+	ATREP11	Helitron	RC	1320	short	841	high	1391555	pericentromeric	1997	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	2220285	2221186	AT2TE10260	.	-	ATENSPM7	En-Spm	DNA	901	short	74	medium	1390653	pericentromeric	3318	no-RdDM	no-RdDM	ExpressedAndAnnotated	2220412,2222175,2222187	2220191,2220191,2220247	-,-,-	transcript_id-"cf8c3c83-e966-488a-a423-67bfbdd66ea1|5",transcript_id-"151e5521-6e8a-4503-8c24-6c0eb08236d9|4",transcript_id-"dee04a15-1e61-4616-a1ae-602a1e9cdafa|3"
Chr2	2221186	2222415	AT2TE10265	.	-	ATENSPM3	En-Spm	DNA	1229	short	98	medium	1389424	pericentromeric	4219	no-RdDM	no-RdDM	ExpressedAndAnnotated	2222175,2222187	2220191,2220247	-,-	transcript_id-"151e5521-6e8a-4503-8c24-6c0eb08236d9|4",transcript_id-"dee04a15-1e61-4616-a1ae-602a1e9cdafa|3"
Chr2	2223751	2224419	AT2TE10270	.	+	ATDNA2T9C	MuDR	DNA	668	short	242	high	1387420	pericentromeric	5339	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2225084	2225583	AT2TE10275	.	+	VANDAL18	MuDR	DNA	499	short	14	low	1386256	pericentromeric	4175	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2225583	2225807	AT2TE10280	.	+	VANDAL18	MuDR	DNA	224	short	14	low	1386032	pericentromeric	3951	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2225969	2226024	AT2TE10285	.	+	ATREP3	Helitron	RC	55	tiny	1439	high	1385815	pericentromeric	3734	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2226024	2226195	AT2TE10290	.	+	HELITRONY1D	Helitron	RC	171	short	756	high	1385644	pericentromeric	3563	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2226195	2227022	AT2TE10295	.	+	ATHPOGON3	Pogo	DNA	827	short	118	medium	1384817	pericentromeric	2736	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2227022	2227312	AT2TE10300	.	-	ATREP10D	Helitron	RC	290	short	1295	high	1384527	pericentromeric	2446	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2227312	2227560	AT2TE10305	.	-	ATGP5	Gypsy	LTR	248	short	86	medium	1384279	pericentromeric	2198	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2228622	2229017	AT2TE10310	.	-	ATREP10D	Helitron	RC	395	short	1295	high	1382822	pericentromeric	741	DCL3-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2229017	2229048	AT2TE10315	.	-	ATREP1	Helitron	RC	31	tiny	498	high	1382791	pericentromeric	710	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2229048	2229571	AT2TE10320	.	-	ARNOLDY2	MuDR	DNA	523	short	288	high	1382268	pericentromeric	187	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	2232386	2233113	AT2TE10330	.	-	SIMPLEGUY1	Harbinger	DNA	727	short	116	medium	1378726	pericentromeric	547	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2233114	2233258	AT2TE10335	.	+	TAG2	HAT	DNA	145	short	86	medium	1378581	pericentromeric	967	.	.	.	.	.	.	.
Chr2	2233691	2234035	AT2TE10340	.	-	ATMUNX1	MuDR	DNA	344	short	155	medium	1377804	pericentromeric	190	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2234035	2234101	AT2TE10345	.	+	BRODYAGA1A	MuDR	DNA	66	tiny	586	high	1377738	pericentromeric	124	no-CHH	no-CHH	.	.	.	.	.
Chr2	2236526	2240579	AT2TE10355	.	-	ATCOPIA30	Copia	LTR	4053	medium	33	low	1371260	pericentromeric	473	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	2240579	2241230	AT2TE10360	.	-	ATREP13	Helitron	RC	651	short	106	medium	1370609	pericentromeric	1543	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2241233	2242112	AT2TE10365	.	-	ATREP10D	Helitron	RC	879	short	1295	high	1369727	pericentromeric	661	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2244790	2245629	AT2TE10375	.	-	HELITRONY3	Helitron	RC	839	short	1399	high	1366210	pericentromeric	330	no-CHH	no-CHH	.	.	.	.	.
Chr2	2245929	2246168	AT2TE10380	.	-	HELITRONY1E	Helitron	RC	239	short	447	high	1365671	pericentromeric	1469	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2246168	2256074	AT2TE10385	.	-	HELITRONY2	Helitron	RC	9906	long	198	medium	1355765	pericentromeric	895	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	2256074	2256117	AT2TE10390	.	-	ATREP10D	Helitron	RC	43	tiny	1295	high	1355722	pericentromeric	852	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	2256117	2256605	AT2TE10395	.	-	ATREP10	Helitron	RC	488	short	63	medium	1355234	pericentromeric	364	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2259598	2259985	AT2TE10405	.	-	ATHATN3	HAT	DNA	387	short	70	medium	1351854	pericentromeric	222	no-CHH	no-CHH	.	.	.	.	.
Chr2	2260685	2261026	AT2TE10410	.	-	ATSINE4	.	SINE	341	short	98	medium	1350813	pericentromeric	1309	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2261229	2261382	AT2TE10415	.	-	HELITRONY1B	Helitron	RC	153	short	414	high	1350457	pericentromeric	1853	no-CHH	no-CHH	.	.	.	.	.
Chr2	2261382	2261419	AT2TE10420	.	-	ATREP11A	Helitron	RC	37	tiny	95	medium	1350420	pericentromeric	2006	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	2261419	2262466	AT2TE10425	.	-	ATREP11A	Helitron	RC	1047	short	95	medium	1349373	pericentromeric	1349	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2262466	2262567	AT2TE10430	.	-	HELITRONY1E	Helitron	RC	101	short	447	high	1349272	pericentromeric	1248	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2264685	2264848	AT2TE10440	.	-	HELITRONY1C	Helitron	RC	163	short	120	medium	1346991	pericentromeric	420	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	2264848	2265252	AT2TE10445	.	+	ATTIR16T3A	.	DNA	404	short	106	medium	1346587	pericentromeric	583	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr2	2265258	2265432	AT2TE10450	.	+	HELITRONY3	Helitron	RC	174	short	1399	high	1346407	pericentromeric	993	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2265432	2266486	AT2TE10455	.	+	HELITRONY1E	Helitron	RC	1054	short	447	high	1345353	pericentromeric	1167	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2273548	2274110	AT2TE10490	.	+	ATLINE1_6	L1	LINE	562	short	129	medium	1337729	pericentromeric	1341	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	2274202	2280054	AT2TE10495	.	+	ATCOPIA58	Copia	LTR	5852	long	18	low	1331785	pericentromeric	1995	no-RdDM	no-RdDM	ExpressedAndAnnotated	2278859	2280019	+	transcript_id-"01c9de29-090b-4177-99f1-0ac84e861ce9|3"
Chr2	2280054	2282263	AT2TE10500	.	+	ATLINE1_6	L1	LINE	2209	medium	129	medium	1329576	pericentromeric	5250	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	2282197,2282217	2280731,2280776	-,-	transcript_id-"34ed0db1-2cdc-4520-9218-2398d852ace1|3",transcript_id-"378023e6-d998-4683-8433-529e4807c795|4"
Chr2	2282816	2283656	AT2TE10505	.	+	HELITRONY1B	Helitron	RC	840	short	414	high	1328183	pericentromeric	3857	no-CHH	no-CHH	.	.	.	.	.
Chr2	2283656	2283783	AT2TE10510	.	-	BRODYAGA1A	MuDR	DNA	127	short	586	high	1328056	pericentromeric	3730	no-CHH	no-CHH	.	.	.	.	.
Chr2	2284253	2284530	AT2TE10515	.	+	ATSINE4	.	SINE	277	short	98	medium	1327309	pericentromeric	2983	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2284530	2285293	AT2TE10520	.	-	ATREP11	Helitron	RC	763	short	841	high	1326546	pericentromeric	2220	no-CHH	no-CHH	.	.	.	.	.
Chr2	2285293	2285947	AT2TE10525	.	-	TNAT1A	.	DNA	654	short	162	medium	1325892	pericentromeric	1566	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	2285947	2286100	AT2TE10530	.	+	ARNOLD1	MuDR	DNA	153	short	39	low	1325739	pericentromeric	1413	no-CHH	no-CHH	.	.	.	.	.
Chr2	2286100	2286954	AT2TE10535	.	-	ATREP10D	Helitron	RC	854	short	1295	high	1324885	pericentromeric	559	no-CHH	no-CHH	.	.	.	.	.
Chr2	2289760	2289958	AT2TE10545	.	-	ATREP3	Helitron	RC	198	short	1439	high	1321881	pericentromeric	490	no-CHH	no-CHH	.	.	.	.	.
Chr2	2289958	2290148	AT2TE10550	.	-	ATREP3	Helitron	RC	190	short	1439	high	1321691	pericentromeric	688	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2290148	2291556	AT2TE10555	.	+	ATREP10D	Helitron	RC	1408	short	1295	high	1320283	pericentromeric	878	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	2295766	2295825	AT2TE10570	.	+	ATHILA4C	Gypsy	LTR	59	tiny	206	high	1316014	pericentromeric	6496	RDR6-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	2295825	2296323	AT2TE10575	.	+	ATHILA4C	Gypsy	LTR	498	short	206	high	1315516	pericentromeric	6555	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	2296323	2296399	AT2TE10580	.	+	ATHILA4C	Gypsy	LTR	76	tiny	206	high	1315440	pericentromeric	7053	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2296811	2298015	AT2TE10585	.	+	ATENSPM2	En-Spm	DNA	1204	short	114	medium	1313824	pericentromeric	7541	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	2297112	2297763	AT2TE10590	.	+	ATREP13	Helitron	RC	651	short	106	medium	1314076	pericentromeric	7842	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	2297815	2298721	AT2TE10595	.	+	Unassigned	.	Unassigned	906	short	.	low	1313118	pericentromeric	8545	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	2298708	2298979	AT2TE10600	.	-	ATREP3	Helitron	RC	271	short	1439	high	1312860	pericentromeric	9438	PolIV-and-RDR6-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	2298979	2299781	AT2TE10605	.	+	ATREP2A	Helitron	RC	802	short	116	medium	1312058	pericentromeric	8869	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	2299781	2299821	AT2TE10610	.	+	ATREP2A	Helitron	RC	40	tiny	116	medium	1312018	pericentromeric	8829	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	2299821	2301751	AT2TE10615	.	-	ATHILA4	Gypsy	LTR	1930	short	250	high	1310088	pericentromeric	6899	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	2302460	2307173	AT2TE10620	.	+	ATCOPIA40	Copia	LTR	4713	medium	6	low	1304666	pericentromeric	1477	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	2307375	2307792	AT2TE10625	.	+	ATHAT1	HAT	DNA	417	short	105	medium	1304047	pericentromeric	858	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	2307792	2307896	AT2TE10630	.	+	ATHAT1	HAT	DNA	104	short	105	medium	1303943	pericentromeric	754	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	2309720	2309768	AT2TE10635	.	-	ATREP1	Helitron	RC	48	tiny	498	high	1302071	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	2309768	2310315	AT2TE10640	.	-	ATREP3	Helitron	RC	547	short	1439	high	1301524	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	2310315	2310617	AT2TE10645	.	+	ATREP7	Helitron	RC	302	short	164	medium	1301222	pericentromeric	531	no-CHH	no-CHH	.	.	.	.	.
Chr2	2310617	2310983	AT2TE10650	.	-	ATDNA2T9A	MuDR	DNA	366	short	48	low	1300856	pericentromeric	833	no-CHH	no-CHH	.	.	.	.	.
Chr2	2310983	2312454	AT2TE10655	.	-	VANDALNX2	MuDR	DNA	1471	short	37	low	1299385	pericentromeric	1199	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2312454	2312503	AT2TE10660	.	-	VANDALNX2	MuDR	DNA	49	tiny	37	low	1299336	pericentromeric	2670	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2312503	2312702	AT2TE10665	.	-	ATDNA2T9A	MuDR	DNA	199	short	48	low	1299137	pericentromeric	2719	no-CHH	no-CHH	.	.	.	.	.
Chr2	2312921	2313787	AT2TE10670	.	-	ATREP5	Helitron	RC	866	short	624	high	1298052	pericentromeric	3137	no-CHH	no-CHH	.	.	.	.	.
Chr2	2313891	2314135	AT2TE10675	.	-	ATLINE2	L1	LINE	244	short	138	medium	1297704	pericentromeric	4107	no-CHH	no-CHH	.	.	.	.	.
Chr2	2314135	2318254	AT2TE10680	.	-	ATLINEIII	L1	LINE	4119	medium	196	medium	1293585	pericentromeric	4351	no-CHH	no-CHH	.	.	.	.	.
Chr2	2318269	2318503	AT2TE10685	.	+	ATLINE1A	L1	LINE	234	short	289	high	1293336	pericentromeric	4372	no-CHH	no-CHH	.	.	.	.	.
Chr2	2318503	2322143	AT2TE10690	.	+	ATLINE1A	L1	LINE	3640	medium	289	high	1289696	pericentromeric	732	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2319865	2319898	AT2TE10695	.	-	ATREP15	Helitron	RC	33	tiny	1003	high	1291941	pericentromeric	2977	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2319898	2319958	AT2TE10700	.	-	ATREP11	Helitron	RC	60	tiny	841	high	1291881	pericentromeric	2917	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2319958	2320939	AT2TE10705	.	+	ATREP1	Helitron	RC	981	short	498	high	1290900	pericentromeric	1936	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2320939	2321202	AT2TE10710	.	+	HELITRONY1E	Helitron	RC	263	short	447	high	1290637	pericentromeric	1673	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2321202	2321332	AT2TE10715	.	+	HELITRONY1D	Helitron	RC	130	short	756	high	1290507	pericentromeric	1543	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2325354	2325529	AT2TE10730	.	+	HELITRONY1A	Helitron	RC	175	short	271	high	1286310	pericentromeric	487	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	2325529	2327252	AT2TE10735	.	+	HELITRONY1A	Helitron	RC	1723	short	271	high	1284587	pericentromeric	662	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	2325751	2326879	AT2TE10740	.	+	HELITRONY1A	Helitron	RC	1128	short	271	high	1284960	pericentromeric	884	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	2330077	2330578	AT2TE10750	.	+	ATREP11	Helitron	RC	501	short	841	high	1281261	pericentromeric	467	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	2331932	2332392	AT2TE10755	.	-	ATHATN4	HAT	DNA	461	short	56	medium	1279447	pericentromeric	190	.	.	LowExpressed	.	.	.	.
Chr2	2336152	2336173	AT2TE10765	.	+	ATHATN1	HAT	DNA	21	tiny	69	medium	1275666	pericentromeric	130	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	2338736	2338769	AT2TE10775	.	-	ATREP10A	Helitron	RC	33	tiny	279	high	1273070	pericentromeric	345	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	2338769	2338863	AT2TE10780	.	+	ATREP15	Helitron	RC	94	tiny	1003	high	1272976	pericentromeric	378	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	2338863	2341762	AT2TE10785	.	-	ATREP10D	Helitron	RC	2899	medium	1295	high	1270077	pericentromeric	472	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2341762	2342047	AT2TE10790	.	+	ATREP9	Helitron	RC	285	short	201	high	1269792	pericentromeric	487	no-CHH	no-CHH	.	.	.	.	.
Chr2	2342047	2342083	AT2TE10795	.	+	ATREP10D	Helitron	RC	36	tiny	1295	high	1269756	pericentromeric	451	no-CHH	no-CHH	.	.	.	.	.
Chr2	2342083	2342287	AT2TE10800	.	-	ATREP11	Helitron	RC	204	short	841	high	1269552	pericentromeric	247	no-CHH	no-CHH	.	.	.	.	.
Chr2	2342877	2344827	AT2TE10805	.	-	ATREP3	Helitron	RC	1950	short	1439	high	1267012	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	2344827	2345076	AT2TE10810	.	-	HELITRONY3	Helitron	RC	249	short	1399	high	1266763	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	2346315	2346491	AT2TE10815	.	-	RP1_AT	.	DNA	176	short	87	medium	1265348	pericentromeric	108	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	2347209	2347259	AT2TE10820	.	-	ARNOLDY2	MuDR	DNA	50	tiny	288	high	1264580	pericentromeric	1002	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2347259	2347758	AT2TE10825	.	+	BRODYAGA1A	MuDR	DNA	499	short	586	high	1264081	pericentromeric	1052	no-CHH	no-CHH	.	.	.	.	.
Chr2	2347758	2347808	AT2TE10830	.	-	BRODYAGA1A	MuDR	DNA	50	tiny	586	high	1264031	pericentromeric	1551	RDR6-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	2349456	2349693	AT2TE10835	.	-	DT1	Mariner	DNA	237	short	123	medium	1262146	pericentromeric	537	no-CHH	no-CHH	.	.	.	.	.
Chr2	2355597	2356098	AT2TE10860	.	+	ATREP10D	Helitron	RC	501	short	1295	high	1255741	pericentromeric	178	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2356098	2356134	AT2TE10865	.	+	VANDAL17	MuDR	DNA	36	tiny	178	medium	1255705	pericentromeric	679	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2356134	2356474	AT2TE10870	.	+	BRODYAGA2	MuDR	DNA	340	short	525	high	1255365	pericentromeric	715	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2357947	2358545	AT2TE10875	.	-	HELITRONY1B	Helitron	RC	598	short	414	high	1253294	pericentromeric	694	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	2358736	2359049	AT2TE10880	.	+	ATCOPIA4	Copia	LTR	313	short	11	low	1252790	pericentromeric	190	no-CHH	no-CHH	.	.	.	.	.
Chr2	2360547	2361429	AT2TE10885	.	-	ATREP4	Helitron	RC	882	short	832	high	1250410	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	2360665	2360951	AT2TE10890	.	-	DT1	Mariner	DNA	286	short	123	medium	1250888	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	2363476	2363841	AT2TE10900	.	-	HELITRONY3	Helitron	RC	365	short	1399	high	1247998	pericentromeric	1505	no-CHH	no-CHH	.	.	.	.	.
Chr2	2364153	2365948	AT2TE10905	.	+	ATLINEIII	L1	LINE	1795	short	196	medium	1245891	pericentromeric	2182	no-RdDM	no-CHH	.	.	.	.	.
Chr2	2366174	2367075	AT2TE10910	.	+	ATCOPIA31	Copia	LTR	901	short	8	low	1244764	pericentromeric	4203	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	2367077	2369546	AT2TE10915	.	+	ATCOPIA23	Copia	LTR	2469	medium	8	low	1242293	pericentromeric	2060	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	2369546	2369619	AT2TE10920	.	+	ATCOPIA31	Copia	LTR	73	tiny	8	low	1242220	pericentromeric	1987	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr2	2369619	2371468	AT2TE10925	.	+	ATLINE2	L1	LINE	1849	short	138	medium	1240371	pericentromeric	138	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	2371976	2372369	AT2TE10930	.	-	HELITRONY1E	Helitron	RC	393	short	447	high	1239470	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	2372369	2373240	AT2TE10935	.	+	ATREP4	Helitron	RC	871	short	832	high	1238599	pericentromeric	355	no-CHH	no-CHH	.	.	.	.	.
Chr2	2373258	2374260	AT2TE10940	.	-	VANDAL17	MuDR	DNA	1002	short	178	medium	1237579	pericentromeric	0	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	2373489,2373489	2374750,2374759	+,+	transcript_id-"cabdf329-4a2c-43ea-b39b-d400f7ba902f|14",transcript_id-"1505c0b6-4fed-4716-9ee6-88126179fc59|19"
Chr2	2374269	2378354	AT2TE10945	.	+	ATHILA4	Gypsy	LTR	4085	medium	250	high	1233485	pericentromeric	0	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	2373489,2373489	2374750,2374759	+,+	transcript_id-"cabdf329-4a2c-43ea-b39b-d400f7ba902f|14",transcript_id-"1505c0b6-4fed-4716-9ee6-88126179fc59|19"
Chr2	2378363	2378390	AT2TE10950	.	-	ATHILA4	Gypsy	LTR	28	tiny	250	high	1233449	pericentromeric	3834	.	.	.	.	.	.	.
Chr2	2378390	2382180	AT2TE10955	.	-	ATHILA4	Gypsy	LTR	3790	medium	250	high	1229659	pericentromeric	3862	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	2382310	2382673	AT2TE10960	.	-	ATHILA4	Gypsy	LTR	363	short	250	high	1229166	pericentromeric	7782	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	2382673	2389184	AT2TE10965	.	-	VANDAL17	MuDR	DNA	6511	long	178	medium	1222655	pericentromeric	8145	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	2389184	2390869	AT2TE10970	.	-	ATHILA	Gypsy	LTR	1685	short	198	medium	1220970	pericentromeric	14656	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	2390869	2399529	AT2TE10975	.	+	ATHILA8A	Gypsy	LTR	8660	long	97	medium	1212310	pericentromeric	11475	no-RdDM	no-RdDM	ExpressedAndAnnotated	2401083	2399191	-	transcript_id-"12583f55-c678-4442-ab85-2bdff3d967c5|3"
Chr2	2399530	2410158	AT2TE10980	.	-	ATHILA	Gypsy	LTR	10628	long	198	medium	1201681	pericentromeric	846	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	2401083,2402249	2399191,2399232	-,-	transcript_id-"12583f55-c678-4442-ab85-2bdff3d967c5|3",transcript_id-"bd2670a9-3a56-4b50-93bf-059c2a884879|26"
Chr2	2401124	2402966	AT2TE10985	.	-	ATHILA6A	Gypsy	LTR	1842	short	247	high	1208873	pericentromeric	8038	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	2402249	2399232	-	transcript_id-"bd2670a9-3a56-4b50-93bf-059c2a884879|26"
Chr2	2409709	2409792	AT2TE11010	.	-	ATHILA	Gypsy	LTR	83	tiny	198	medium	1202047	pericentromeric	1212	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	2410158	2411238	AT2TE11015	.	-	VANDAL17	MuDR	DNA	1080	short	178	medium	1200601	pericentromeric	0	PolIV-and-RDR6-RdDM	RDR6-RdDM	ExpressedAndAnnotated	2411036	2409302	-	transcript_id-"b6c78984-2ad7-4ac6-9851-9d51d22ad05b|9"
Chr2	2413632	2413863	AT2TE11025	.	+	ATMU1	MuDR	DNA	231	short	59	medium	1197976	pericentromeric	1976	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2414345	2414601	AT2TE11030	.	+	ATMU2	MuDR	DNA	256	short	64	medium	1197238	pericentromeric	2689	no-CHH	no-CHH	.	.	.	.	.
Chr2	2416162	2416280	AT2TE11035	.	+	ATGP7	Gypsy	LTR	118	short	47	low	1195559	pericentromeric	4506	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	2416280	2423558	AT2TE11040	.	+	ATGP7	Gypsy	LTR	7278	long	47	low	1188281	pericentromeric	2781	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	2419044,2422152,2422322,2419893	2418922,2418966,2418966,2419012	-,-,-,-	transcript_id-"2b203a57-8c12-426d-9b3a-1ec3783385f8|11",transcript_id-"d86e795b-772a-4393-9543-2ee86f069169|6",transcript_id-"70bb7f0f-5612-40f8-88ea-933fa9be6510|7",transcript_id-"4d0abf65-cb74-4f11-9c41-1e2f25fdf180|4"
Chr2	2418588	2418610	AT2TE11045	.	+	ATGP5	Gypsy	LTR	22	tiny	86	medium	1193229	pericentromeric	6932	no-RdDM	no-CHH	.	.	.	.	.
Chr2	2418613	2423173	AT2TE11050	.	+	ATLANTYS1	Gypsy	LTR	4560	medium	153	medium	1188666	pericentromeric	3166	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	2419044,2422152,2422322,2419893	2418922,2418966,2418966,2419012	-,-,-,-	transcript_id-"2b203a57-8c12-426d-9b3a-1ec3783385f8|11",transcript_id-"d86e795b-772a-4393-9543-2ee86f069169|6",transcript_id-"70bb7f0f-5612-40f8-88ea-933fa9be6510|7",transcript_id-"4d0abf65-cb74-4f11-9c41-1e2f25fdf180|4"
Chr2	2423558	2423651	AT2TE11055	.	+	ATGP5	Gypsy	LTR	93	tiny	86	medium	1188188	pericentromeric	2688	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	2425864	2425984	AT2TE11065	.	-	ATLINE1A	L1	LINE	120	short	289	high	1185855	pericentromeric	355	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	2426442	2426559	AT2TE11070	.	+	VANDAL3	MuDR	DNA	117	short	177	medium	1185280	pericentromeric	0	no-CHH	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	2428200	2428942	AT2TE11075	.	+	TAG3N1	HAT	DNA	742	short	97	medium	1182897	pericentromeric	165	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	2436993	2442260	AT2TE11110	.	-	VANDAL7	MuDR	DNA	5267	long	36	low	1169579	pericentromeric	405	no-RdDM	no-RdDM	ExpressedAndAnnotated	2439065	2440049	+	transcript_id-"a34d4f7b-2410-4549-bcf0-dd8d2e7a1399|17"
Chr2	2442265	2443224	AT2TE11115	.	-	ATREP11	Helitron	RC	959	short	841	high	1168615	pericentromeric	5677	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2443432	2443913	AT2TE11120	.	+	HELITRONY3	Helitron	RC	481	short	1399	high	1167926	pericentromeric	6844	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2443913	2445960	AT2TE11125	.	-	VANDAL7	MuDR	DNA	2047	medium	36	low	1165879	pericentromeric	7325	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	2445960	2446092	AT2TE11130	.	+	VANDAL6	MuDR	DNA	132	short	89	medium	1165747	pericentromeric	9372	no-RdDM	no-CHH	.	.	.	.	.
Chr2	2446388	2446566	AT2TE11135	.	-	ATENSPM6	En-Spm	DNA	179	short	151	medium	1165273	pericentromeric	9799	.	.	.	.	.	.	.
Chr2	2446760	2447741	AT2TE11140	.	-	VANDAL7	MuDR	DNA	981	short	36	low	1164098	pericentromeric	10172	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	2447741	2454177	AT2TE11145	.	+	ATHILA2	Gypsy	LTR	6436	long	413	high	1157662	pericentromeric	5158	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	2454181	2454397	AT2TE11150	.	-	VANDAL7	MuDR	DNA	216	short	36	low	1157442	pericentromeric	4938	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	2454397	2454634	AT2TE11155	.	+	ATHATN4	HAT	DNA	237	short	56	medium	1157205	pericentromeric	4701	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2454688	2454756	AT2TE11160	.	+	ATREP4	Helitron	RC	68	tiny	832	high	1157083	pericentromeric	4579	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr2	2454756	2460915	AT2TE11165	.	-	ATREP10D	Helitron	RC	6159	long	1295	high	1150924	pericentromeric	0	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	2454840	2454889	AT2TE11170	.	-	HELITRONY1B	Helitron	RC	49	tiny	414	high	1156950	pericentromeric	4446	no-CHH	no-RdDM	.	.	.	.	.
Chr2	2454889	2455418	AT2TE11175	.	+	HELITRONY1D	Helitron	RC	529	short	756	high	1156421	pericentromeric	3917	no-CHH	no-CHH	.	.	.	.	.
Chr2	2455713	2457177	AT2TE11180	.	-	ATREP11	Helitron	RC	1464	short	841	high	1154662	pericentromeric	2158	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2458019	2458781	AT2TE11185	.	-	ATREP5	Helitron	RC	762	short	624	high	1153058	pericentromeric	554	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	2459750	2459785	AT2TE11190	.	-	ARNOLDY2	MuDR	DNA	35	tiny	288	high	1152054	pericentromeric	85	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	2459785	2459868	AT2TE11195	.	+	ATREP3	Helitron	RC	83	tiny	1439	high	1151971	pericentromeric	120	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	2461017	2461124	AT2TE11200	.	+	ATDNAI27T9A	MuDR	DNA	107	short	116	medium	1150715	pericentromeric	1352	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	2461575	2461725	AT2TE11205	.	+	ATHILA4B_LTR	Gypsy	LTR	150	short	143	medium	1150114	pericentromeric	1910	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	2461725	2468223	AT2TE11210	.	+	ATHILA4B_LTR	Gypsy	LTR	6498	long	143	medium	1143616	pericentromeric	2060	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	2462889	2463440	AT2TE11215	.	+	ATHILA4	Gypsy	LTR	551	short	250	high	1148399	pericentromeric	3224	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	2463440	2464621	AT2TE11220	.	-	ATHILA4D_LTR	Gypsy	LTR	1181	short	106	medium	1147218	pericentromeric	3775	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	2464621	2465239	AT2TE11225	.	+	ATHILA4	Gypsy	LTR	618	short	250	high	1146600	pericentromeric	4956	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	2465243	2465960	AT2TE11230	.	+	ATHILA3	Gypsy	LTR	717	short	243	high	1145879	pericentromeric	5578	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	2465987	2466087	AT2TE11235	.	+	ATHILA4C	Gypsy	LTR	100	short	206	high	1145752	pericentromeric	6322	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2468636	2469090	AT2TE11245	.	+	VANDAL4	MuDR	DNA	454	short	102	medium	1142749	pericentromeric	8971	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2469090	2470294	AT2TE11250	.	-	ATHILA4A	Gypsy	LTR	1204	short	310	high	1141545	pericentromeric	9425	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2470294	2470890	AT2TE11255	.	+	VANDAL5A	MuDR	DNA	596	short	56	medium	1140949	pericentromeric	10629	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2471484	2472656	AT2TE11260	.	-	VANDAL5	MuDR	DNA	1172	short	85	medium	1139183	pericentromeric	11819	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	2472656	2472802	AT2TE11265	.	+	VANDAL1	MuDR	DNA	146	short	80	medium	1139037	pericentromeric	12991	no-CHH	no-CHH	.	.	.	.	.
Chr2	2472914	2473160	AT2TE11270	.	+	ATHATN8	HAT	DNA	246	short	15	low	1138679	pericentromeric	13249	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2473161	2473831	AT2TE11275	.	-	ATREP18	.	DNA	670	short	391	high	1138008	pericentromeric	13496	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2474106	2474563	AT2TE11280	.	-	VANDAL4	MuDR	DNA	457	short	102	medium	1137276	pericentromeric	14441	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2479446	2480950	AT2TE11300	.	+	ATLINE1_6	L1	LINE	1505	short	129	medium	1130889	pericentromeric	19780	.	.	LowExpressed	.	.	.	.
Chr2	2480951	2480970	AT2TE11305	.	+	ATLINE1_6	L1	LINE	20	tiny	129	medium	1130869	pericentromeric	21285	.	.	LowExpressed	.	.	.	.
Chr2	2483255	2484583	AT2TE11315	.	+	ATLINE1_6	L1	LINE	1328	short	129	medium	1127256	pericentromeric	23590	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	2485055	2485331	AT2TE11320	.	+	VANDAL4	MuDR	DNA	276	short	102	medium	1126508	pericentromeric	25390	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2486952	2487779	AT2TE11325	.	-	ATHILA	Gypsy	LTR	827	short	198	medium	1124060	pericentromeric	27287	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	2487780	2491971	AT2TE11330	.	+	ATHILA2	Gypsy	LTR	4191	medium	413	high	1119868	pericentromeric	28115	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2491971	2492001	AT2TE11335	.	+	ATHILA2	Gypsy	LTR	30	tiny	413	high	1119838	pericentromeric	32306	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	2492017	2494444	AT2TE11340	.	+	ATHILA6A	Gypsy	LTR	2427	medium	247	high	1117395	pericentromeric	32352	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2494444	2494503	AT2TE11345	.	+	ATHILA6B	Gypsy	LTR	59	tiny	134	medium	1117336	pericentromeric	34779	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2494503	2500632	AT2TE11350	.	+	ATHILA2	Gypsy	LTR	6129	long	413	high	1111207	pericentromeric	34838	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	2500632	2504274	AT2TE11355	.	-	ATHILA	Gypsy	LTR	3642	medium	198	medium	1107565	pericentromeric	34808	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	2504276	2504515	AT2TE11360	.	-	ATHILA6A	Gypsy	LTR	239	short	247	high	1107324	pericentromeric	34567	no-RdDM	no-CHH	.	.	.	.	.
Chr2	2504942	2504967	AT2TE11365	.	-	ATHILA0_I	Gypsy	LTR	25	tiny	138	medium	1106872	pericentromeric	34115	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2504979	2510352	AT2TE11370	.	-	ATHILA6A	Gypsy	LTR	5373	long	247	high	1101487	pericentromeric	28730	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	2510352	2512186	AT2TE11375	.	-	ATHILA	Gypsy	LTR	1834	short	198	medium	1099653	pericentromeric	26896	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	2512190	2512220	AT2TE11380	.	-	ATHILA6A	Gypsy	LTR	30	tiny	247	high	1099619	pericentromeric	26862	RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr2	2512299	2513366	AT2TE11385	.	-	ATENSPM9	En-Spm	DNA	1067	short	97	medium	1098473	pericentromeric	25716	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	2513366	2513445	AT2TE11390	.	+	ATREP11	Helitron	RC	79	tiny	841	high	1098394	pericentromeric	25637	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2513445	2514798	AT2TE11395	.	+	ATREP11	Helitron	RC	1353	short	841	high	1097041	pericentromeric	24284	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2514798	2517448	AT2TE11400	.	-	VANDAL2	MuDR	DNA	2650	medium	43	low	1094391	pericentromeric	21634	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2516560	2516873	AT2TE11405	.	-	ATDNA12T3_2	.	DNA	313	short	660	high	1094966	pericentromeric	22209	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2517531	2520502	AT2TE11410	.	+	HELITRONY1C	Helitron	RC	2971	medium	120	medium	1091337	pericentromeric	18580	no-RdDM	no-CHH	ExpressedAndAnnotated	2518461	2519133	+	transcript_id-"93789d9c-52d4-4ff5-b0d9-4366f4e7602b|3"
Chr2	2520502	2520665	AT2TE11415	.	+	HELITRONY1C	Helitron	RC	163	short	120	medium	1091174	pericentromeric	18417	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2520665	2521490	AT2TE11420	.	+	ATREP11	Helitron	RC	825	short	841	high	1090349	pericentromeric	17592	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2521828	2522232	AT2TE11425	.	+	BRODYAGA1A	MuDR	DNA	404	short	586	high	1089607	pericentromeric	16850	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2522605	2522871	AT2TE11430	.	+	HARBINGER	Harbinger	DNA	266	short	90	medium	1088968	pericentromeric	16211	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2523630	2527699	AT2TE11435	.	-	ATLINE1_5	L1	LINE	4069	medium	91	medium	1084140	pericentromeric	11383	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	2522878	2524302	+	transcript_id-"f4a1ef3b-6e69-4c0e-8ce5-e80c5c17ffa9|3"
Chr2	2527699	2527806	AT2TE11440	.	-	ATLINE1_4	L1	LINE	107	short	102	medium	1084033	pericentromeric	11276	no-CHH	no-CHH	.	.	.	.	.
Chr2	2529074	2535262	AT2TE11445	.	-	VANDAL16	MuDR	DNA	6188	long	42	low	1076577	pericentromeric	3820	no-RdDM	no-RdDM	ExpressedAndAnnotated	2530285	2529663	-	transcript_id-"36b628d8-7e88-4893-b6d3-22efc59fb14d|6"
Chr2	2529556	2529586	AT2TE11450	.	-	VANDAL16	MuDR	DNA	30	tiny	42	low	1082253	pericentromeric	9496	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr2	2535262	2535982	AT2TE11480	.	-	ARNOLDY2	MuDR	DNA	720	short	288	high	1075857	pericentromeric	3100	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2535983	2536163	AT2TE11485	.	-	ARNOLD3	MuDR	DNA	181	short	45	low	1075676	pericentromeric	2919	.	.	.	.	.	.	.
Chr2	2536602	2537527	AT2TE11490	.	-	ARNOLDY2	MuDR	DNA	925	short	288	high	1074312	pericentromeric	1555	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2538012	2538392	AT2TE11495	.	+	ATREP11	Helitron	RC	380	short	841	high	1073447	pericentromeric	690	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2539100	2541787	AT2TE11500	.	-	VANDAL21	MuDR	DNA	2687	medium	64	medium	1070052	pericentromeric	0	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	2542024	2541497	-	transcript_id-"739017ac-4e98-4bdc-bda1-12ac693dfaeb|3"
Chr2	2541787	2541958	AT2TE11505	.	-	ATGP10	Gypsy	LTR	171	short	165	medium	1069881	pericentromeric	1802	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	2542583	2542616	AT2TE11510	.	-	ARNOLD2	MuDR	DNA	33	tiny	68	medium	1069223	pericentromeric	2598	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2542616	2559353	AT2TE11515	.	-	ARNOLD3	MuDR	DNA	16737	long	45	low	1052486	pericentromeric	2631	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	2542779,2547362,2549302,2554456,2559240	2547983,2547942,2552023,2554837,2555426	+,+,+,+,-	transcript_id-"7f0123bd-2ecc-4117-8ca2-2725c173a80b|13",transcript_id-"73fd1ddc-a795-498c-a932-66c2ffe74d11|6",transcript_id-"b3ee3e3e-71b0-4f99-88d9-34e77edcf2d5|11",transcript_id-"0426bdbf-7e0c-4db0-8aac-fb3881296378|4",transcript_id-"34806949-f8ac-4bd5-95b6-ad46262adc54|5"
Chr2	2559354	2559557	AT2TE11520	.	-	ATMUN1	MuDR	DNA	204	short	107	medium	1052282	pericentromeric	19368	.	.	.	.	.	.	.
Chr2	2559557	2560419	AT2TE11525	.	+	VANDAL17	MuDR	DNA	862	short	178	medium	1051420	pericentromeric	19572	no-RdDM	no-CHH	.	.	.	.	.
Chr2	2560691	2560775	AT2TE11530	.	+	META1	Copia	LTR	84	tiny	138	medium	1051064	pericentromeric	19942	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	2561714	2562665	AT2TE11535	.	-	ATGP10	Gypsy	LTR	951	short	165	medium	1049174	pericentromeric	18052	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	2562809	2570724	AT2TE11540	.	-	ATGP2	Gypsy	LTR	7915	long	48	low	1041115	pericentromeric	9993	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	2570975,2570975	2562961,2569587	-,-	transcript_id-"1a80fb70-b405-469b-bc9e-91a14325dfa9|3",transcript_id-"73819f2c-b09c-4080-a026-826ff33f4331|8"
Chr2	2572619	2573466	AT2TE11545	.	-	ATENSPM6	En-Spm	DNA	847	short	151	medium	1038373	pericentromeric	7251	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	2574684,2574684	2571906,2571928	-,-	transcript_id-"33eb026f-6371-4550-9e70-aa52dcc0d264|5",transcript_id-"f7fc74d1-7ec7-4864-900c-39e7eab4a112|15"
Chr2	2573466	2573542	AT2TE11550	.	-	ATENSPM9	En-Spm	DNA	76	tiny	97	medium	1038297	pericentromeric	7175	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	2574502	2574692	AT2TE11555	.	-	ATENSPM1	En-Spm	DNA	190	short	30	low	1037147	pericentromeric	6025	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	2576248	2578241	AT2TE11560	.	-	ATHILA6A	Gypsy	LTR	1993	short	247	high	1033598	pericentromeric	2476	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	2577549	2577431	-	transcript_id-"c1d0b0c8-2fec-44c0-a0a4-ea3d19e6bbfc|4"
Chr2	2578242	2578266	AT2TE11565	.	-	ATHILA	Gypsy	LTR	24	tiny	198	medium	1033573	pericentromeric	2451	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	2578686	2578925	AT2TE11570	.	-	ATCOPIA50	Copia	LTR	239	short	17	low	1032914	pericentromeric	1792	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	2579376	2579614	AT2TE11575	.	+	VANDAL17	MuDR	DNA	238	short	178	medium	1032225	pericentromeric	1103	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	2584740	2584862	AT2TE11600	.	-	ATCOPIA30	Copia	LTR	122	short	33	low	1026977	pericentromeric	352	no-CHH	no-CHH	.	.	.	.	.
Chr2	2590471	2590778	AT2TE11630	.	+	ATREP10D	Helitron	RC	307	short	1295	high	1021061	pericentromeric	186	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	2590778	2591779	AT2TE11635	.	-	ATMUN1	MuDR	DNA	1001	short	107	medium	1020060	pericentromeric	493	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2591792	2591838	AT2TE11640	.	+	ATREP5	Helitron	RC	46	tiny	624	high	1020001	pericentromeric	1507	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2591838	2592555	AT2TE11645	.	+	SIMPLEGUY1	Harbinger	DNA	717	short	116	medium	1019284	pericentromeric	1553	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2592555	2592648	AT2TE11650	.	+	SIMPLEHAT1	HAT	DNA	93	tiny	56	medium	1019191	pericentromeric	2270	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr2	2593230	2593431	AT2TE11655	.	-	ATLINE1_4	L1	LINE	201	short	102	medium	1018408	pericentromeric	2945	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	2593708	2593734	AT2TE11660	.	-	TA11	L1	LINE	26	tiny	157	medium	1018105	pericentromeric	3423	DCL3-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	2593734	2596529	AT2TE11665	.	-	TA11	L1	LINE	2795	medium	157	medium	1015310	pericentromeric	1692	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	2601870	2602447	AT2TE11690	.	-	ATREP10D	Helitron	RC	577	short	1295	high	1009392	pericentromeric	1544	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	2602447	2603916	AT2TE11695	.	-	ATIS112A	Harbinger	DNA	1469	short	173	medium	1007923	pericentromeric	278	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	2603985,2603985,2603985	2602716,2603003,2603696	-,-,-	transcript_id-"360e6838-6522-44f8-9742-6e87de956d87|4",transcript_id-"7f2a25b9-2627-4e7c-8a7d-445d4896ca5e|3",transcript_id-"17d9f4e2-a638-4611-b5ad-507e9a387a61|7"
Chr2	2604494	2604656	AT2TE11700	.	-	ATIS112A	Harbinger	DNA	162	short	173	medium	1007183	pericentromeric	0	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	2606719	2606792	AT2TE11710	.	-	BRODYAGA2	MuDR	DNA	74	tiny	525	high	1005047	pericentromeric	1886	.	.	LowExpressed	.	.	.	.
Chr2	2606792	2607607	AT2TE11715	.	-	TNAT1A	.	DNA	815	short	162	medium	1004232	pericentromeric	1960	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2607607	2607660	AT2TE11720	.	+	HELITRONY1B	Helitron	RC	53	tiny	414	high	1004179	pericentromeric	2775	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2607811	2608131	AT2TE11725	.	-	ATDNA12T3_2	.	DNA	320	short	660	high	1003708	pericentromeric	2979	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2609139	2609185	AT2TE11730	.	-	ROMANIAT5	Copia	LTR	46	tiny	49	low	1002654	pericentromeric	4307	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2609185	2610900	AT2TE11735	.	-	ROMANIAT5	Copia	LTR	1715	short	49	low	1000939	pericentromeric	4353	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2610901	2611000	AT2TE11740	.	-	ATCOPIA28	Copia	LTR	100	short	81	medium	1000839	pericentromeric	6068	.	.	.	.	.	.	.
Chr2	2611324	2616338	AT2TE11745	.	+	ATLINEIII	L1	LINE	5014	long	196	medium	995501	pericentromeric	6264	no-CHH	no-CHH	.	.	.	.	.
Chr2	2616338	2617117	AT2TE11750	.	-	ATCOPIA28	Copia	LTR	779	short	81	medium	994722	pericentromeric	5485	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2618648	2618894	AT2TE11755	.	-	VANDAL18	MuDR	DNA	246	short	14	low	992945	pericentromeric	3708	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	2619115	2620320	AT2TE11760	.	-	ATHILA4A	Gypsy	LTR	1205	short	310	high	991519	pericentromeric	2282	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	2622153	2623982	AT2TE11765	.	+	ATHILA2	Gypsy	LTR	1829	short	413	high	987857	pericentromeric	0	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	2625098	2627990	AT2TE11770	.	+	ATLINE1_6	L1	LINE	2892	medium	129	medium	983849	pericentromeric	196	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	2628231	2628284	AT2TE11775	.	+	ATREP15	Helitron	RC	53	tiny	1003	high	983555	pericentromeric	3329	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2628284	2629677	AT2TE11780	.	+	ATREP3	Helitron	RC	1393	short	1439	high	982162	pericentromeric	3382	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	2629677	2629748	AT2TE11785	.	-	ATREP1	Helitron	RC	71	tiny	498	high	982091	pericentromeric	4775	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	2629992	2630314	AT2TE11790	.	-	HELITRONY1C	Helitron	RC	322	short	120	medium	981525	pericentromeric	5090	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	2630314	2631713	AT2TE11795	.	+	ATREP3	Helitron	RC	1399	short	1439	high	980126	pericentromeric	5412	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	2631714	2631749	AT2TE11800	.	-	ATDNA2T9C	MuDR	DNA	36	tiny	242	high	980090	pericentromeric	6811	.	.	LowExpressed	.	.	.	.
Chr2	2632429	2635807	AT2TE11805	.	+	ATENSPM1A	En-Spm	DNA	3378	medium	77	medium	976032	pericentromeric	7527	no-RdDM	no-RdDM	ExpressedAndAnnotated	2632596,2632601	2635289,2635272	+,+	transcript_id-"4e3ad152-792b-44a7-a9ec-d4906f8f39d0|6",transcript_id-"71b36cc1-7309-4d3d-8aa2-244344a99a3c|3"
Chr2	2636199	2637023	AT2TE11810	.	+	ATDNA12T3_2	.	DNA	824	short	660	high	974816	pericentromeric	11297	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	2638831	2648149	AT2TE11815	.	+	VANDAL1	MuDR	DNA	9318	long	80	medium	963690	pericentromeric	330	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	2644975,2646397,2647812	2644057,2645516,2646866	-,-,-	transcript_id-"f0519ecc-a3dc-40a4-889c-a205b13c3f51|3",transcript_id-"0d7ed73f-5130-43b9-99a1-1741cd703153|4",transcript_id-"c6b8f206-4191-47b2-a242-7fd2e0c71830|5"
Chr2	2649166	2652057	AT2TE11820	.	+	ATLINE1_6	L1	LINE	2891	medium	129	medium	959782	pericentromeric	195	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	2652294	2652342	AT2TE11825	.	+	ATREP15	Helitron	RC	48	tiny	1003	high	959497	pericentromeric	3323	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2652342	2652381	AT2TE11830	.	+	ATREP5	Helitron	RC	39	tiny	624	high	959458	pericentromeric	3371	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2652381	2652444	AT2TE11835	.	-	HELITRONY1B	Helitron	RC	63	tiny	414	high	959395	pericentromeric	3410	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2652444	2655100	AT2TE11840	.	-	HELITRONY3	Helitron	RC	2656	medium	1399	high	956739	pericentromeric	3473	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2655100	2655205	AT2TE11845	.	-	HELITRONY3	Helitron	RC	105	short	1399	high	956634	pericentromeric	5321	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2655205	2655340	AT2TE11850	.	-	HELITRONY3	Helitron	RC	135	short	1399	high	956499	pericentromeric	5186	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	2655429	2655849	AT2TE11855	.	-	ATHPOGON1	Pogo	DNA	420	short	174	medium	955990	pericentromeric	4677	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2655849	2657963	AT2TE11860	.	-	ATHPOGO	Pogo	DNA	2114	medium	25	low	953876	pericentromeric	2563	no-CHH	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	2657963	2658095	AT2TE11865	.	+	ATHPOGON1	Pogo	DNA	132	short	174	medium	953744	pericentromeric	2431	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	2658315	2659414	AT2TE11870	.	-	HELITRONY1C	Helitron	RC	1099	short	120	medium	952425	pericentromeric	1112	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	2659414	2659688	AT2TE11875	.	+	HELITRONY1C	Helitron	RC	274	short	120	medium	952151	pericentromeric	838	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2659688	2660110	AT2TE11880	.	+	ATREP3	Helitron	RC	422	short	1439	high	951729	pericentromeric	416	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr2	2660735	2660935	AT2TE11885	.	+	ATENSPM1	En-Spm	DNA	200	short	30	low	950904	pericentromeric	20	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	2660935	2664200	AT2TE11890	.	+	ATENSPM1A	En-Spm	DNA	3265	medium	77	medium	947639	pericentromeric	220	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	2660913	2663660	+	transcript_id-"379b0b9c-a1ff-40c5-a4c9-084372cbee17|6"
Chr2	2664599	2665423	AT2TE11895	.	+	ATDNA12T3_2	.	DNA	824	short	660	high	946416	pericentromeric	3884	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2666854	2678073	AT2TE11900	.	+	VANDAL1	MuDR	DNA	11219	long	80	medium	933766	pericentromeric	6139	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	2676007	2676050	AT2TE11905	.	+	VANDAL1	MuDR	DNA	43	tiny	80	medium	935789	pericentromeric	15292	no-RdDM	no-CHH	.	.	.	.	.
Chr2	2678073	2678104	AT2TE11915	.	-	ATENSPM6	En-Spm	DNA	31	tiny	151	medium	933735	pericentromeric	17358	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2678104	2681641	AT2TE11920	.	-	ATENSPM6	En-Spm	DNA	3537	medium	151	medium	930198	pericentromeric	17389	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	2679985	2678694	-	transcript_id-"a6493d71-a3b2-47cb-902d-cf9bebf84f4b|7"
Chr2	2681641	2685670	AT2TE11925	.	-	ATENSPM5	En-Spm	DNA	4029	medium	111	medium	926169	pericentromeric	20926	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	2681806	2681553	-	transcript_id-"f578a29a-1bb6-4103-943c-e809fc60a072|9"
Chr2	2685673	2688359	AT2TE11930	.	+	VANDAL1	MuDR	DNA	2686	medium	80	medium	923480	pericentromeric	24958	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	2688160	2685836	-	transcript_id-"3b56fa11-882a-43f3-b828-4dfc300d9f18|3"
Chr2	2688362	2689571	AT2TE11935	.	-	ATHILA4B_LTR	Gypsy	LTR	1209	short	143	medium	922268	pericentromeric	27647	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	2689573	2689634	AT2TE11940	.	+	VANDAL1N1	MuDR	DNA	61	tiny	52	medium	922205	pericentromeric	28858	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2690643	2690751	AT2TE11945	.	+	HELITRON1	Helitron	RC	108	short	130	medium	921088	pericentromeric	29928	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2691427	2691571	AT2TE11950	.	+	ROMANIAT5	Copia	LTR	144	short	49	low	920268	pericentromeric	30712	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	2691571	2693140	AT2TE11955	.	+	ATHILA	Gypsy	LTR	1569	short	198	medium	918699	pericentromeric	30856	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	2693147	2695069	AT2TE11960	.	-	ATHAT3	HAT	DNA	1922	short	23	low	916770	pericentromeric	32432	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	2695532	2696018	AT2TE11965	.	+	HELITRON1	Helitron	RC	486	short	130	medium	915821	pericentromeric	34817	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	2696018	2696711	AT2TE11970	.	+	HELITRONY3	Helitron	RC	693	short	1399	high	915128	pericentromeric	35303	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2696711	2697093	AT2TE11975	.	+	ATREP7	Helitron	RC	382	short	164	medium	914746	pericentromeric	35996	no-CHH	no-CHH	.	.	.	.	.
Chr2	2698714	2699307	AT2TE11980	.	-	ATLINE1_4	L1	LINE	593	short	102	medium	912532	pericentromeric	37999	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2699308	2709964	AT2TE11985	.	-	ATHILA8A	Gypsy	LTR	10656	long	97	medium	901875	pericentromeric	38593	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	2709380,2708716	2708112,2708245	-,-	transcript_id-"d8deee60-3ad7-4fdb-9d2d-93cd49f0126f|220",transcript_id-"5b9544ed-9afa-4797-8bf6-05dce017d922|4"
Chr2	2699623	2700772	AT2TE11990	.	+	ATHILA4C	Gypsy	LTR	1149	short	206	high	911067	pericentromeric	38908	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2707344	2708993	AT2TE12020	.	-	ATHILA	Gypsy	LTR	1649	short	198	medium	902846	pericentromeric	45672	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	2708716	2708245	-	transcript_id-"5b9544ed-9afa-4797-8bf6-05dce017d922|4"
Chr2	2709964	2712861	AT2TE12025	.	-	ATLINE1_4	L1	LINE	2897	medium	102	medium	898978	pericentromeric	41804	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	2712872	2720794	AT2TE12030	.	+	ATENSPM6	En-Spm	DNA	7922	long	151	medium	891045	pericentromeric	33871	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	2713331,2714365,2714398,2716990	2716627,2714643,2714793,2720086	+,+,+,+	transcript_id-"92e88ca9-fe52-4193-ab67-df4278b064ba|3",transcript_id-"bd2b0d1a-fa87-4899-bf8e-cf3c403f3631|10",transcript_id-"2e7073a9-7120-4836-9260-48f2b53f79c9|7",transcript_id-"c49b9951-442d-4075-9bc8-23be290e81fd|13"
Chr2	2720794	2721275	AT2TE12035	.	-	ATLINE1_4	L1	LINE	481	short	102	medium	890564	pericentromeric	33390	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	2721275	2722904	AT2TE12040	.	-	ATHILA3	Gypsy	LTR	1629	short	243	high	888935	pericentromeric	31761	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	2722908	2722944	AT2TE12045	.	-	ATHILA6B	Gypsy	LTR	36	tiny	134	medium	888895	pericentromeric	31721	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr2	2722956	2723974	AT2TE12050	.	-	ATLINE1_4	L1	LINE	1018	short	102	medium	887865	pericentromeric	30691	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	2724060	2724448	AT2TE12055	.	-	HELITRONY3	Helitron	RC	388	short	1399	high	887391	pericentromeric	30217	no-RdDM	no-CHH	.	.	.	.	.
Chr2	2724611	2727590	AT2TE12060	.	-	ATLINE1_6	L1	LINE	2979	medium	129	medium	884249	pericentromeric	27075	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	2729901	2730706	AT2TE12070	.	-	ATREP4	Helitron	RC	805	short	832	high	881133	pericentromeric	23959	no-CHH	no-CHH	.	.	.	.	.
Chr2	2730706	2731078	AT2TE12075	.	-	ATMUNX1	MuDR	DNA	372	short	155	medium	880761	pericentromeric	23587	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2731866	2731973	AT2TE12080	.	+	ATDNA12T3_2	.	DNA	107	short	660	high	879866	pericentromeric	22692	no-CHH	no-CHH	.	.	.	.	.
Chr2	2732193	2732466	AT2TE12085	.	-	VANDAL3	MuDR	DNA	273	short	177	medium	879373	pericentromeric	22199	no-CHH	no-CHH	.	.	.	.	.
Chr2	2732763	2732864	AT2TE12090	.	-	VANDAL3	MuDR	DNA	101	short	177	medium	878975	pericentromeric	21801	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2732864	2734487	AT2TE12095	.	-	VANDAL3	MuDR	DNA	1623	short	177	medium	877352	pericentromeric	20178	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2734487	2735506	AT2TE12100	.	-	ATREP3	Helitron	RC	1019	short	1439	high	876333	pericentromeric	19159	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2738233	2738277	AT2TE12110	.	-	ATCOPIA67	Copia	LTR	44	tiny	15	low	873562	pericentromeric	16388	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	2739758	2743696	AT2TE12115	.	-	ATCOPIA67	Copia	LTR	3938	medium	15	low	868143	pericentromeric	10969	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	2744282	2744479	AT2TE12120	.	+	ATLINE1_6	L1	LINE	197	short	129	medium	867360	pericentromeric	10186	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	2744547	2744725	AT2TE12125	.	-	HELITRONY3	Helitron	RC	178	short	1399	high	867114	pericentromeric	9940	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	2744726	2745201	AT2TE12130	.	-	ATTIR16T3A	.	DNA	476	short	106	medium	866638	pericentromeric	9464	.	.	.	.	.	.	.
Chr2	2745201	2745604	AT2TE12135	.	-	ATCOPIA42	Copia	LTR	403	short	35	low	866235	pericentromeric	9061	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	2745604	2752270	AT2TE12140	.	+	ATCOPIA75	Copia	LTR	6666	long	20	low	859569	pericentromeric	2395	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	2746010	2747865	AT2TE12145	.	+	ATHILA4A	Gypsy	LTR	1855	short	310	high	863974	pericentromeric	6800	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	2752273	2752643	AT2TE12160	.	-	ATCOPIA42	Copia	LTR	370	short	35	low	859196	pericentromeric	2022	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	2753073	2753235	AT2TE12165	.	+	ATENSPM6	En-Spm	DNA	162	short	151	medium	858604	pericentromeric	1430	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	2756744	2756775	AT2TE12175	.	-	ATREP5	Helitron	RC	31	tiny	624	high	855064	pericentromeric	736	no-CHH	no-CHH	.	.	.	.	.
Chr2	2756775	2757374	AT2TE12180	.	+	TNAT1A	.	DNA	599	short	162	medium	854465	pericentromeric	767	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	2757374	2757609	AT2TE12185	.	-	ATREP5	Helitron	RC	235	short	624	high	854230	pericentromeric	1366	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2757708	2757834	AT2TE12190	.	+	ATCOPIA42	Copia	LTR	126	short	35	low	854005	pericentromeric	1700	no-CHH	no-CHH	.	.	.	.	.
Chr2	2758903	2759011	AT2TE12195	.	-	ATLINE1A	L1	LINE	108	short	289	high	852828	pericentromeric	2895	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2760049	2760358	AT2TE12200	.	+	HELITRONY1D	Helitron	RC	309	short	756	high	851481	pericentromeric	3260	no-CHH	no-CHH	.	.	.	.	.
Chr2	2761416	2762216	AT2TE12205	.	+	HELITRONY3	Helitron	RC	800	short	1399	high	849623	pericentromeric	1402	no-CHH	no-CHH	.	.	.	.	.
Chr2	2762216	2762314	AT2TE12210	.	+	ATREP4	Helitron	RC	98	tiny	832	high	849525	pericentromeric	1304	no-CHH	no-CHH	.	.	.	.	.
Chr2	2763098	2763244	AT2TE12215	.	-	TSCL	.	LINE?	146	short	81	medium	848595	pericentromeric	374	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2763816	2764214	AT2TE12220	.	-	BRODYAGA1	MuDR	DNA	398	short	251	high	847625	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	2765877	2779424	AT2TE12225	.	-	VANDAL9	MuDR	DNA	13547	long	43	low	832415	pericentromeric	387	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	2771095	2773118	AT2TE12230	.	+	ATGP2N	Gypsy	LTR	2023	medium	54	medium	838721	pericentromeric	5605	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	2779424	2780087	AT2TE12260	.	+	ATREP15	Helitron	RC	663	short	1003	high	831752	pericentromeric	13934	no-RdDM	no-CHH	.	.	.	.	.
Chr2	2780087	2781859	AT2TE12265	.	+	ATCOPIA78	Copia	LTR	1772	short	24	low	829980	pericentromeric	14597	no-RdDM	no-CHH	.	.	.	.	.
Chr2	2782037	2785706	AT2TE12270	.	+	ATCOPIA75	Copia	LTR	3669	medium	20	low	826133	pericentromeric	16547	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	2785706	2785859	AT2TE12275	.	+	ATCOPIA89	Copia	LTR	153	short	12	low	825980	pericentromeric	20216	no-RdDM	no-CHH	.	.	.	.	.
Chr2	2786320	2786397	AT2TE12280	.	-	ATHILA2	Gypsy	LTR	77	tiny	413	high	825442	pericentromeric	20227	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	2786397	2788004	AT2TE12285	.	-	ATHILA2	Gypsy	LTR	1607	short	413	high	823835	pericentromeric	18620	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	2788392	2789106	AT2TE12290	.	+	ATENSPM7	En-Spm	DNA	714	short	74	medium	822733	pericentromeric	17518	no-RdDM	no-CHH	.	.	.	.	.
Chr2	2789108	2790792	AT2TE12295	.	+	ATHILA4	Gypsy	LTR	1684	short	250	high	821047	pericentromeric	15832	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2790800	2791609	AT2TE12300	.	+	ATHILA4C	Gypsy	LTR	809	short	206	high	820230	pericentromeric	15015	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	2791609	2791640	AT2TE12305	.	+	ATHILA4C	Gypsy	LTR	31	tiny	206	high	820199	pericentromeric	14984	no-RdDM	no-CHH	.	.	.	.	.
Chr2	2791701	2800659	AT2TE12310	.	+	ATHILA4A	Gypsy	LTR	8958	long	310	high	811180	pericentromeric	5965	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	2793395	2799755	AT2TE12315	.	+	ATGP5	Gypsy	LTR	6360	long	86	medium	812084	pericentromeric	6869	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	2800664	2804388	AT2TE12320	.	+	ATENSPM3	En-Spm	DNA	3724	medium	98	medium	807451	pericentromeric	2236	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	2804388	2804423	AT2TE12325	.	+	ATENSPM7	En-Spm	DNA	35	tiny	74	medium	807416	pericentromeric	2201	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2804423	2804572	AT2TE12330	.	+	ATHILA4B_LTR	Gypsy	LTR	149	short	143	medium	807267	pericentromeric	2052	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2805778	2806532	AT2TE12335	.	+	ATGP10	Gypsy	LTR	754	short	165	medium	805307	pericentromeric	92	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	2808059	2808835	AT2TE12340	.	-	ATGP10	Gypsy	LTR	776	short	165	medium	803004	pericentromeric	92	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	2811679	2813114	AT2TE12350	.	-	ATGP10	Gypsy	LTR	1435	short	165	medium	798725	pericentromeric	2283	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	2813114	2813640	AT2TE12355	.	+	ATHILA8A	Gypsy	LTR	526	short	97	medium	798199	pericentromeric	1757	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	2813640	2814137	AT2TE12360	.	-	ATGP10	Gypsy	LTR	497	short	165	medium	797702	pericentromeric	1260	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	2814394	2814483	AT2TE12365	.	-	ATGP10	Gypsy	LTR	89	tiny	165	medium	797356	pericentromeric	914	no-RdDM	no-CHH	.	.	.	.	.
Chr2	2815405	2815727	AT2TE12370	.	-	ATGP10	Gypsy	LTR	322	short	165	medium	796112	pericentromeric	0	no-RdDM	no-CHH	.	.	.	.	.
Chr2	2815729	2817935	AT2TE12375	.	+	ATHILA8A	Gypsy	LTR	2206	medium	97	medium	793904	pericentromeric	0	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	2818366	2818530	AT2TE12380	.	+	ATENSPM6	En-Spm	DNA	164	short	151	medium	793309	pericentromeric	2017	no-RdDM	no-CHH	.	.	.	.	.
Chr2	2818530	2818659	AT2TE12385	.	+	ATENSPM2	En-Spm	DNA	129	short	114	medium	793180	pericentromeric	2181	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	2818659	2822102	AT2TE12390	.	+	ATENSPM2	En-Spm	DNA	3443	medium	114	medium	789737	pericentromeric	2310	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	2820320	2820435	AT2TE12395	.	+	ATENSPM2	En-Spm	DNA	115	short	114	medium	791404	pericentromeric	3971	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	2820435	2821032	AT2TE12400	.	+	ATREP5	Helitron	RC	597	short	624	high	790807	pericentromeric	4086	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	2822416	2823049	AT2TE12405	.	+	ARNOLDY2	MuDR	DNA	633	short	288	high	788790	pericentromeric	6067	no-RdDM	no-CHH	.	.	.	.	.
Chr2	2823238	2823697	AT2TE12410	.	-	ARNOLDY1	MuDR	DNA	459	short	237	high	788142	pericentromeric	6889	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	2824393	2825266	AT2TE12415	.	+	ATHILA4	Gypsy	LTR	873	short	250	high	786573	pericentromeric	8044	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	2826180	2826213	AT2TE12420	.	+	ATLINE1_6	L1	LINE	33	tiny	129	medium	785626	pericentromeric	9831	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	2827403	2831332	AT2TE12425	.	+	ATHILA2	Gypsy	LTR	3929	medium	413	high	780507	pericentromeric	11054	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	2830162	2830385	+	transcript_id-"f3d25e35-f5ab-4f7c-bdac-53e908c0972a|13"
Chr2	2829968	2830453	AT2TE12430	.	+	ATLANTYS1	Gypsy	LTR	485	short	153	medium	781386	pericentromeric	12021	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	2830162	2830385	+	transcript_id-"f3d25e35-f5ab-4f7c-bdac-53e908c0972a|13"
Chr2	2832362	2833661	AT2TE12435	.	+	ATGP2	Gypsy	LTR	1299	short	48	low	778178	pericentromeric	8813	no-RdDM	no-RdDM	ExpressedAndAnnotated	2833632	2833470	-	transcript_id-"da47e587-e498-47ba-917f-c4886b219d3c|3"
Chr2	2836957	2838292	AT2TE12445	.	+	ATCOPIA95	Copia	LTR	1335	short	72	medium	773547	pericentromeric	4182	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	2838794	2841583	AT2TE12450	.	+	ATHILA4C	Gypsy	LTR	2789	medium	206	high	770256	pericentromeric	891	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2841583	2841633	AT2TE12455	.	+	ATHILA4A	Gypsy	LTR	50	tiny	310	high	770206	pericentromeric	841	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2843830	2844755	AT2TE12465	.	+	ATREP8	Helitron	RC	925	short	75	medium	767084	pericentromeric	618	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	2844764	2849743	AT2TE12470	.	-	ATCOPIA68	Copia	LTR	4979	medium	43	low	762096	pericentromeric	1552	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	2844993,2849567	2844626,2844855	-,-	transcript_id-"feb2e657-ecd8-4ff7-a474-70620ad635e8|5",transcript_id-"6ef9ab49-f382-42b4-9ac7-e6f309383a82|4"
Chr2	2849743	2852332	AT2TE12475	.	+	ATREP11	Helitron	RC	2589	medium	841	high	759507	pericentromeric	6531	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2852332	2852444	AT2TE12480	.	+	ATREP13	Helitron	RC	112	short	106	medium	759395	pericentromeric	9120	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2852444	2852562	AT2TE12485	.	+	ATREP13	Helitron	RC	118	short	106	medium	759277	pericentromeric	9232	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	2852562	2852647	AT2TE12490	.	+	ATREP6	Helitron	RC	85	tiny	181	medium	759192	pericentromeric	9350	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2852647	2854329	AT2TE12495	.	-	ATDNA2T9C	MuDR	DNA	1682	short	242	high	757510	pericentromeric	9435	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2854329	2854447	AT2TE12500	.	-	ATDNA2T9C	MuDR	DNA	118	short	242	high	757392	pericentromeric	11117	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2855655	2857328	AT2TE12505	.	-	ATHILA	Gypsy	LTR	1673	short	198	medium	754511	pericentromeric	10343	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	2858587	2864201	AT2TE12510	.	-	ATCOPIA8A	Copia	LTR	5614	long	12	low	747638	pericentromeric	3470	no-CHH	no-CHH	ExpressedAndAnnotated	2863509	2861776	-	transcript_id-"2cd26696-cc39-47f6-b80d-8043e7df26b6|43"
Chr2	2867875	2867962	AT2TE12520	.	+	SIMPLEHAT2	HAT	DNA	87	tiny	73	medium	743877	pericentromeric	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2867962	2868063	AT2TE12525	.	+	HELITRONY3	Helitron	RC	101	short	1399	high	743776	pericentromeric	0	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2868063	2870091	AT2TE12530	.	-	ATREP10D	Helitron	RC	2028	medium	1295	high	741748	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	2870430	2870558	AT2TE12535	.	-	BRODYAGA2	MuDR	DNA	128	short	525	high	741281	pericentromeric	78	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	2871265	2871356	AT2TE12540	.	-	BRODYAGA2	MuDR	DNA	91	tiny	525	high	740483	pericentromeric	913	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	2871700	2871783	AT2TE12545	.	-	ATHILA3	Gypsy	LTR	83	tiny	243	high	740056	pericentromeric	1348	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2871783	2871822	AT2TE12550	.	-	ATHILA3	Gypsy	LTR	39	tiny	243	high	740017	pericentromeric	1431	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	2871822	2882410	AT2TE12555	.	-	ATHILA3	Gypsy	LTR	10588	long	243	high	729429	pericentromeric	1470	no-RdDM	no-RdDM	ExpressedAndAnnotated	2874712,2874712,2874144,2874712,2874712	2872698,2873455,2873901,2873901,2874134	-,-,-,-,-	transcript_id-"18140fff-883d-4bae-be39-8926a24ecb32|34",transcript_id-"c3744ea9-24fa-4f71-ad4a-ff7cc66bfb33|14",transcript_id-"f048134b-a57c-431e-8f2a-d77a56b565b8|3",transcript_id-"a633e701-15c3-4772-a204-e88da96dcf39|5",transcript_id-"54d21fe3-5fe6-446c-92bd-e2599a3119e5|52"
Chr2	2882423	2882730	AT2TE12560	.	-	ATCOPIA95	Copia	LTR	307	short	72	medium	729109	pericentromeric	6220	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	2883200	2883286	AT2TE12565	.	-	TAT1_ATH	Gypsy	LTR	86	tiny	87	medium	728553	pericentromeric	5664	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	2884701	2885448	AT2TE12570	.	+	ATDNA12T3A	.	DNA	747	short	22	low	726391	pericentromeric	3502	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	2885743	2886231	AT2TE12575	.	+	ATLINE1_2	L1	LINE	488	short	41	low	725608	pericentromeric	2719	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr2	2886318	2886880	AT2TE12580	.	-	ATREP10D	Helitron	RC	562	short	1295	high	724959	pericentromeric	2070	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	2887355	2887383	AT2TE12585	.	-	ATREP4	Helitron	RC	28	tiny	832	high	724456	pericentromeric	1567	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	2887383	2887942	AT2TE12590	.	-	ATREP10B	Helitron	RC	559	short	491	high	723897	pericentromeric	1008	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	2887942	2888296	AT2TE12595	.	-	ATREP10A	Helitron	RC	354	short	279	high	723543	pericentromeric	654	no-CHH	no-CHH	.	.	.	.	.
Chr2	2888575	2888716	AT2TE12600	.	+	ATTIRX1A	.	DNA	141	short	63	medium	723123	pericentromeric	234	no-CHH	no-CHH	.	.	.	.	.
Chr2	2889782	2890060	AT2TE12605	.	+	ATLANTYS3	Gypsy	LTR	278	short	142	medium	721779	pericentromeric	400	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	2890060	2890406	AT2TE12610	.	+	ATTIRX1D	.	DNA	346	short	28	low	721433	pericentromeric	678	no-CHH	no-CHH	.	.	.	.	.
Chr2	2892240	2892311	AT2TE12615	.	+	ATDNA12T3_2	.	DNA	71	tiny	660	high	719528	pericentromeric	2823	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2892764	2892925	AT2TE12620	.	-	RathE3_cons	.	RathE3_cons	161	short	104	medium	718914	pericentromeric	2209	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2893673	2893826	AT2TE12625	.	-	BRODYAGA1A	MuDR	DNA	153	short	586	high	718013	pericentromeric	1308	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	2902329	2907117	AT2TE12660	.	+	ATCOPIA13	Copia	LTR	4788	medium	35	low	704722	pericentromeric	317	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	2907674	2908040	AT2TE12665	.	-	SIMPLEGUY1	Harbinger	DNA	366	short	116	medium	703799	pericentromeric	432	no-CHH	no-CHH	.	.	.	.	.
Chr2	2908040	2908145	AT2TE12670	.	-	HARBINGER	Harbinger	DNA	105	short	90	medium	703694	pericentromeric	327	no-CHH	no-CHH	.	.	.	.	.
Chr2	2911226	2911374	AT2TE12680	.	+	HELITRONY3	Helitron	RC	148	short	1399	high	700465	pericentromeric	28	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	2911374	2911445	AT2TE12685	.	-	ATREP4	Helitron	RC	71	tiny	832	high	700394	pericentromeric	176	no-CHH	no-CHH	.	.	.	.	.
Chr2	2911445	2911497	AT2TE12690	.	-	ATREP11	Helitron	RC	52	tiny	841	high	700342	pericentromeric	247	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr2	2911497	2911654	AT2TE12695	.	-	HELITRONY1A	Helitron	RC	157	short	271	high	700185	pericentromeric	299	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2911654	2913291	AT2TE12700	.	-	HELITRONY1A	Helitron	RC	1637	short	271	high	698548	pericentromeric	456	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2913291	2913609	AT2TE12705	.	+	ATREP10D	Helitron	RC	318	short	1295	high	698230	pericentromeric	2093	no-RdDM	no-CHH	.	.	.	.	.
Chr2	2913723	2914572	AT2TE12710	.	+	ATMU4	MuDR	DNA	849	short	14	low	697267	pericentromeric	2048	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	2914577	2915088	AT2TE12715	.	+	ATMU11	MuDR	DNA	511	short	20	low	696751	pericentromeric	1532	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	2915103	2915354	AT2TE12720	.	-	BRODYAGA1A	MuDR	DNA	251	short	586	high	696485	pericentromeric	1266	RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr2	2915354	2916148	AT2TE12725	.	+	ATLINE1A	L1	LINE	794	short	289	high	695691	pericentromeric	472	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2918990	2919887	AT2TE12735	.	-	HELITRONY1A	Helitron	RC	897	short	271	high	691952	pericentromeric	230	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2919887	2920072	AT2TE12740	.	-	ATREP5	Helitron	RC	185	short	624	high	691767	pericentromeric	1127	no-CHH	no-CHH	.	.	.	.	.
Chr2	2922162	2922387	AT2TE12750	.	+	ATREP10D	Helitron	RC	225	short	1295	high	689452	pericentromeric	2241	no-CHH	no-CHH	.	.	.	.	.
Chr2	2922387	2923829	AT2TE12755	.	+	ATREP15	Helitron	RC	1442	short	1003	high	688010	pericentromeric	799	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2923829	2924162	AT2TE12760	.	+	ATREP4	Helitron	RC	333	short	832	high	687677	pericentromeric	466	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2924162	2924187	AT2TE12765	.	+	ATREP4	Helitron	RC	25	tiny	832	high	687652	pericentromeric	441	no-CHH	no-CHH	.	.	.	.	.
Chr2	2924187	2924248	AT2TE12770	.	+	ATREP10D	Helitron	RC	61	tiny	1295	high	687591	pericentromeric	380	no-CHH	no-CHH	.	.	.	.	.
Chr2	2932276	2934860	AT2TE12810	.	-	ATLINE1_6	L1	LINE	2584	medium	129	medium	676979	pericentromeric	1981	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	2935656	2938180	AT2TE12815	.	+	ATCOPIA43	Copia	LTR	2524	medium	29	low	673659	pericentromeric	5361	no-RdDM	no-RdDM	ExpressedAndAnnotated	2935081	2936135	+	transcript_id-"8795d516-6443-4aea-91fb-9314efc0df1b|5"
Chr2	2940090	2941106	AT2TE12820	.	-	HELITRONY3	Helitron	RC	1016	short	1399	high	670733	pericentromeric	9795	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	2941106	2945799	AT2TE12825	.	-	ATMU9	MuDR	DNA	4693	medium	16	low	666040	pericentromeric	6810	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	2945541	2945047	-	transcript_id-"97c83f45-a16a-4aac-bec1-2e3da195ff4f|6"
Chr2	2949964	2950818	AT2TE12840	.	-	ATREP10B	Helitron	RC	854	short	491	high	661021	pericentromeric	1791	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	2951786	2951867	AT2TE12845	.	-	HELITRONY3	Helitron	RC	81	tiny	1399	high	659972	pericentromeric	742	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	2951867	2952410	AT2TE12850	.	-	HELITRONY3	Helitron	RC	543	short	1399	high	659429	pericentromeric	199	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	2953329	2953550	AT2TE12855	.	+	ATREP9	Helitron	RC	221	short	201	high	658289	pericentromeric	54	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2954783	2954993	AT2TE12860	.	+	ATENSPM4	En-Spm	DNA	210	short	50	medium	656846	pericentromeric	61	no-CHH	no-CHH	.	.	.	.	.
Chr2	2958881	2958933	AT2TE12870	.	+	ATCOPIA57	Copia	LTR	52	tiny	48	low	652906	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	2958933	2959114	AT2TE12875	.	+	ATCOPIA57	Copia	LTR	181	short	48	low	652725	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	2960550	2961089	AT2TE12880	.	+	HELITRONY1B	Helitron	RC	539	short	414	high	650750	pericentromeric	699	no-CHH	no-CHH	.	.	.	.	.
Chr2	2961089	2961138	AT2TE12885	.	-	ATCOPIA11	Copia	LTR	49	tiny	26	low	650701	pericentromeric	1238	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	2961262	2961821	AT2TE12890	.	+	ATREP13	Helitron	RC	559	short	106	medium	650018	pericentromeric	1411	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2961821	2961895	AT2TE12895	.	+	ATREP10D	Helitron	RC	74	tiny	1295	high	649944	pericentromeric	1970	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	2961895	2962812	AT2TE12900	.	-	ATREP3	Helitron	RC	917	short	1439	high	649027	pericentromeric	2044	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2962812	2962930	AT2TE12905	.	-	ATREP1	Helitron	RC	118	short	498	high	648909	pericentromeric	2961	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	2962930	2964188	AT2TE12910	.	+	ATLINE1A	L1	LINE	1258	short	289	high	647651	pericentromeric	3079	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	2964188	2964210	AT2TE12915	.	-	ATDNA2T9C	MuDR	DNA	22	tiny	242	high	647629	pericentromeric	4337	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	2964210	2964408	AT2TE12920	.	-	ARNOLDY1	MuDR	DNA	198	short	237	high	647431	pericentromeric	4359	DCL3-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2964408	2964619	AT2TE12925	.	-	ARNOLDY2	MuDR	DNA	211	short	288	high	647220	pericentromeric	4557	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	2964619	2966774	AT2TE12930	.	+	ARNOLDY2	MuDR	DNA	2155	medium	288	high	645065	pericentromeric	4768	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2966774	2967012	AT2TE12935	.	-	ARNOLDY2	MuDR	DNA	238	short	288	high	644827	pericentromeric	6923	no-CHH	no-CHH	.	.	.	.	.
Chr2	2967012	2967590	AT2TE12940	.	+	HELITRON2	Helitron	RC	578	short	194	medium	644249	pericentromeric	7161	no-CHH	no-CHH	.	.	.	.	.
Chr2	2967590	2967736	AT2TE12945	.	+	BRODYAGA2	MuDR	DNA	146	short	525	high	644103	pericentromeric	7739	no-CHH	no-CHH	.	.	.	.	.
Chr2	2967981	2969230	AT2TE12950	.	+	ATHAT2	HAT	DNA	1249	short	19	low	642609	pericentromeric	6334	no-CHH	no-CHH	.	.	.	.	.
Chr2	2970931	2971055	AT2TE12955	.	+	ATLINE1_5	L1	LINE	124	short	91	medium	640784	pericentromeric	4509	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	2971055	2973440	AT2TE12960	.	+	ATLINE1_5	L1	LINE	2385	medium	91	medium	638399	pericentromeric	2124	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	2973440	2973627	AT2TE12965	.	+	TA11	L1	LINE	187	short	157	medium	638212	pericentromeric	1937	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	2980028	2980789	AT2TE12990	.	-	TAG3N1	HAT	DNA	761	short	97	medium	631050	pericentromeric	292	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	2982969	2983099	AT2TE13000	.	-	ATLINE1A	L1	LINE	130	short	289	high	628740	pericentromeric	0	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	2983605	2983859	AT2TE13005	.	+	ATREP11	Helitron	RC	254	short	841	high	627980	pericentromeric	334	no-CHH	no-CHH	.	.	.	.	.
Chr2	2983859	2985105	AT2TE13010	.	+	HELITRONY1A	Helitron	RC	1246	short	271	high	626734	pericentromeric	588	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2985105	2985522	AT2TE13015	.	-	ATREP10A	Helitron	RC	417	short	279	high	626317	pericentromeric	1834	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	2985523	2985667	AT2TE13020	.	+	HELITRONY3	Helitron	RC	145	short	1399	high	626172	pericentromeric	1699	.	.	.	.	.	.	.
Chr2	2985783	2987306	AT2TE13025	.	+	HELITRON2	Helitron	RC	1523	short	194	medium	624533	pericentromeric	60	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	2990714	2990738	AT2TE13035	.	-	VANDAL17	MuDR	DNA	24	tiny	178	medium	621101	pericentromeric	836	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	2990738	2991802	AT2TE13040	.	-	ARNOLD2	MuDR	DNA	1064	short	68	medium	620037	pericentromeric	860	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	2991802	2991918	AT2TE13045	.	-	ARNOLD3	MuDR	DNA	116	short	45	low	619921	pericentromeric	1924	no-RdDM	no-CHH	.	.	.	.	.
Chr2	2992673	2993917	AT2TE13050	.	-	HELITRONY1E	Helitron	RC	1244	short	447	high	617922	pericentromeric	2795	no-CHH	no-CHH	.	.	.	.	.
Chr2	2993917	2995731	AT2TE13055	.	+	HELITRONY2	Helitron	RC	1814	short	198	medium	616108	pericentromeric	1044	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	2995750	2996370	AT2TE13060	.	+	ATCOPIA32	Copia	LTR	620	short	8	low	615469	pericentromeric	405	no-RdDM	no-CHH	ExpressedAndAnnotated	2996030,2996035	2996322,2996450	+,+	transcript_id-"f8e06b81-c39d-4418-b0aa-fcc6a5183472|118",transcript_id-"2d0a5092-b3d9-4150-b261-a915d8c80d4f|5"
Chr2	2998164	2998271	AT2TE13065	.	-	ATHILA4	Gypsy	LTR	107	short	250	high	613568	pericentromeric	275	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2998277	2999735	AT2TE13070	.	-	ATHILA4C	Gypsy	LTR	1458	short	206	high	612104	pericentromeric	388	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	2999735	2999826	AT2TE13075	.	-	ARNOLDY1	MuDR	DNA	91	tiny	237	high	612013	pericentromeric	1846	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	3000612	3005283	AT2TE13080	.	+	VANDAL9	MuDR	DNA	4671	medium	43	low	606556	pericentromeric	1818	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3003313	3003383	AT2TE13085	.	+	VANDAL14	MuDR	DNA	70	tiny	25	low	608456	pericentromeric	3718	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3003612	3003643	AT2TE13090	.	+	VANDAL13	MuDR	DNA	31	tiny	38	low	608196	pericentromeric	3458	no-RdDM	no-CHH	.	.	.	.	.
Chr2	3007087	3007108	AT2TE13100	.	+	VANDAL11	MuDR	DNA	21	tiny	18	low	604731	pericentromeric	0	DCL3-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	3007108	3008067	AT2TE13105	.	+	VANDAL11	MuDR	DNA	959	short	18	low	603772	pericentromeric	0	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	3010236	3012123	AT2TE13115	.	+	VANDAL12	MuDR	DNA	1887	short	37	low	599716	pericentromeric	0	no-RdDM	no-CHH	.	.	.	.	.
Chr2	3011100	3011160	AT2TE13120	.	+	VANDAL10	MuDR	DNA	60	tiny	13	low	600679	pericentromeric	0	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3012123	3012255	AT2TE13125	.	+	VANDAL9	MuDR	DNA	132	short	43	low	599584	pericentromeric	422	no-CHH	no-CHH	.	.	.	.	.
Chr2	3012803	3013097	AT2TE13130	.	-	HELITRONY3	Helitron	RC	294	short	1399	high	598742	pericentromeric	1102	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	3013097	3013131	AT2TE13135	.	+	ARNOLDY2	MuDR	DNA	34	tiny	288	high	598708	pericentromeric	1396	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	3013131	3014478	AT2TE13140	.	-	ARNOLDY2	MuDR	DNA	1347	short	288	high	597361	pericentromeric	1430	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	3014478	3023011	AT2TE13145	.	+	ARNOLD4	MuDR	DNA	8533	long	23	low	588828	pericentromeric	2777	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	3022875,3022869	3019438,3019440	-,-	transcript_id-"fa5609f5-9e89-4d06-9556-fe084a8c89bb|7",transcript_id-"092d33b5-3aa8-419f-bebf-f348bc1f69c8|14"
Chr2	3023011	3023064	AT2TE13150	.	+	ARNOLD4	MuDR	DNA	53	tiny	23	low	588775	pericentromeric	3333	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	3023064	3023260	AT2TE13155	.	+	ATDNA2T9C	MuDR	DNA	196	short	242	high	588579	pericentromeric	3137	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	3023327	3023664	AT2TE13160	.	+	ATSINE4	.	SINE	337	short	98	medium	588175	pericentromeric	2733	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	3023981	3024329	AT2TE13165	.	-	ATLINE1A	L1	LINE	348	short	289	high	587510	pericentromeric	2068	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	3024723	3025684	AT2TE13170	.	-	TSCL	.	LINE?	961	short	81	medium	586155	pericentromeric	713	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	3025685	3025725	AT2TE13175	.	-	TSCL	.	LINE?	41	tiny	81	medium	586114	pericentromeric	672	.	.	LowExpressed	.	.	.	.
Chr2	3025827	3026015	AT2TE13180	.	-	TSCL	.	LINE?	188	short	81	medium	585824	pericentromeric	382	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	3026942	3027038	AT2TE13185	.	-	VANDAL22	MuDR	DNA	96	tiny	48	low	584801	pericentromeric	0	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	3030585	3030627	AT2TE13195	.	-	VANDAL5	MuDR	DNA	42	tiny	85	medium	581212	pericentromeric	550	no-RdDM	no-CHH	.	.	.	.	.
Chr2	3030627	3031810	AT2TE13200	.	-	VANDAL5	MuDR	DNA	1183	short	85	medium	580029	pericentromeric	592	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	3033103	3033366	AT2TE13205	.	-	VANDAL5	MuDR	DNA	263	short	85	medium	578473	pericentromeric	1430	no-RdDM	no-CHH	.	.	.	.	.
Chr2	3034688	3035101	AT2TE13210	.	+	VANDAL4	MuDR	DNA	413	short	102	medium	576738	pericentromeric	0	no-RdDM	no-CHH	.	.	.	.	.
Chr2	3036101	3036399	AT2TE13215	.	-	VANDAL4	MuDR	DNA	298	short	102	medium	575440	pericentromeric	0	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	3039219	3039786	AT2TE13225	.	+	VANDAL4	MuDR	DNA	567	short	102	medium	572053	pericentromeric	2832	no-RdDM	no-CHH	.	.	.	.	.
Chr2	3040092	3040905	AT2TE13230	.	+	ATREP11	Helitron	RC	813	short	841	high	570934	pericentromeric	3705	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	3040905	3041567	AT2TE13235	.	-	VANDAL12	MuDR	DNA	662	short	37	low	570272	pericentromeric	4076	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	3041927	3041987	AT2TE13240	.	-	VANDAL4	MuDR	DNA	60	tiny	102	medium	569852	pericentromeric	3656	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	3041987	3044868	AT2TE13245	.	-	VANDAL5A	MuDR	DNA	2881	medium	56	medium	566971	pericentromeric	775	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	3057286	3057396	AT2TE13300	.	-	BRODYAGA1A	MuDR	DNA	110	short	586	high	554443	pericentromeric	187	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	3057590	3057638	AT2TE13305	.	+	BRODYAGA1A	MuDR	DNA	48	tiny	586	high	554201	pericentromeric	491	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	3057638	3057684	AT2TE13310	.	+	ATMU10	MuDR	DNA	46	tiny	87	medium	554155	pericentromeric	539	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	3057684	3058062	AT2TE13315	.	+	ATMU10	MuDR	DNA	378	short	87	medium	553777	pericentromeric	585	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	3058062	3058583	AT2TE13320	.	-	BRODYAGA1	MuDR	DNA	521	short	251	high	553256	pericentromeric	334	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	3059457	3060803	AT2TE13325	.	-	ATCOPIA95	Copia	LTR	1346	short	72	medium	551036	pericentromeric	151	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3060845	3061226	AT2TE13330	.	+	ATTIRX1C	.	DNA	381	short	39	low	550613	pericentromeric	1539	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	3061228	3074307	AT2TE13335	.	+	VANDAL3	MuDR	DNA	13079	long	177	medium	537532	pericentromeric	1922	no-RdDM	no-RdDM	ExpressedAndAnnotated	3068678,3069273,3072092	3068099,3069067,3071837	-,-,-	transcript_id-"02323864-21a9-4c18-86dd-87016a8f7584|3",transcript_id-"9f31a2fe-4e17-4325-ad19-de1278a6c876|5",transcript_id-"c874b848-2cdd-486b-adec-ca009f26e955|5"
Chr2	3074311	3075732	AT2TE13340	.	-	ATCOPIA95	Copia	LTR	1421	short	72	medium	536107	pericentromeric	15005	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	3074943	3075461	AT2TE13345	.	-	ATHPOGON1	Pogo	DNA	518	short	174	medium	536378	pericentromeric	15637	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	3075734	3078570	AT2TE13350	.	-	ATHILA	Gypsy	LTR	2836	medium	198	medium	533269	pericentromeric	15250	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	3077204	3077305	AT2TE13355	.	-	ATHILA6A	Gypsy	LTR	101	short	247	high	534534	pericentromeric	16515	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	3078570	3079248	AT2TE13360	.	-	ATHILA6A	Gypsy	LTR	678	short	247	high	532591	pericentromeric	14572	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	3079248	3079437	AT2TE13365	.	-	ATHILA6A	Gypsy	LTR	189	short	247	high	532402	pericentromeric	14383	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	3079297	3079387	AT2TE13370	.	-	ATHILA6A	Gypsy	LTR	90	tiny	247	high	532452	pericentromeric	14433	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	3079437	3079511	AT2TE13375	.	-	ATHILA6B	Gypsy	LTR	74	tiny	134	medium	532328	pericentromeric	14309	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	3079511	3083903	AT2TE13380	.	-	ATHILA6B	Gypsy	LTR	4392	medium	134	medium	527936	pericentromeric	9917	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3083903	3089468	AT2TE13385	.	-	ATCOPIA20	Copia	LTR	5565	long	6	low	522371	pericentromeric	4352	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3089468	3092288	AT2TE13390	.	-	ATHILA2	Gypsy	LTR	2820	medium	413	high	519551	pericentromeric	1532	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	3092288	3092479	AT2TE13395	.	-	ATHILA2	Gypsy	LTR	191	short	413	high	519360	pericentromeric	1341	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	3092480	3092524	AT2TE13400	.	-	ROMANIAT5	Copia	LTR	44	tiny	49	low	519315	pericentromeric	1296	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	3092729	3092770	AT2TE13405	.	-	ATDNAI27T9C	MuDR	DNA	41	tiny	108	medium	519069	pericentromeric	1050	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	3092770	3093021	AT2TE13410	.	+	VANDAL17	MuDR	DNA	251	short	178	medium	518818	pericentromeric	799	no-CHH	RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	3094821	3094961	AT2TE13415	.	+	ATHILA5	Gypsy	LTR	140	short	131	medium	516878	pericentromeric	71	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	3094961	3096558	AT2TE13420	.	+	ATHILA5	Gypsy	LTR	1597	short	131	medium	515281	pericentromeric	211	no-RdDM	no-RdDM	ExpressedAndAnnotated	3094836,3095113	3095642,3106339	+,+	transcript_id-"553ed7c6-9539-4e8f-9165-b4b88433daa0|3",transcript_id-"dfae82d3-607e-41d4-bb9a-1c1abe43a931|3"
Chr2	3096558	3096581	AT2TE13425	.	-	ATHILA5	Gypsy	LTR	23	tiny	131	medium	515258	pericentromeric	1808	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3096581	3097805	AT2TE13430	.	-	ATHILA5	Gypsy	LTR	1224	short	131	medium	514034	pericentromeric	1831	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3097812	3097892	AT2TE13435	.	-	ATHILA5	Gypsy	LTR	80	tiny	131	medium	513947	pericentromeric	3062	DCL3-RdDM	no-RdDM	.	.	.	.	.
Chr2	3098016	3107253	AT2TE13440	.	+	ATHILA5	Gypsy	LTR	9237	long	131	medium	504586	pericentromeric	3266	no-RdDM	no-RdDM	ExpressedAndAnnotated	3095113,3104301,3105200	3106339,3105060,3106325	+,+,+	transcript_id-"dfae82d3-607e-41d4-bb9a-1c1abe43a931|3",transcript_id-"78e7b77e-9444-4f6f-ba0e-15c42e8a8987|5",transcript_id-"625b7dc2-231b-4cda-bf7e-aadd0ddcdb68|6"
Chr2	3107314	3112019	AT2TE13445	.	-	VANDAL21	MuDR	DNA	4705	medium	64	medium	499820	pericentromeric	12564	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	3109368	3109641	AT2TE13450	.	-	VANDAL21	MuDR	DNA	273	short	64	medium	502198	pericentromeric	14618	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	3109701	3109833	AT2TE13455	.	+	VANDAL21	MuDR	DNA	132	short	64	medium	502006	pericentromeric	14951	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	3109833	3109914	AT2TE13460	.	+	ROMANIAT5	Copia	LTR	81	tiny	49	low	501925	pericentromeric	15083	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	3109914	3110725	AT2TE13465	.	+	ATHILA2	Gypsy	LTR	811	short	413	high	501114	pericentromeric	14945	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3112019	3112091	AT2TE13470	.	+	ATENSPM10	En-Spm	DNA	72	tiny	81	medium	499748	pericentromeric	13579	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3113354	3114636	AT2TE13475	.	-	Unassigned	.	Unassigned	1282	short	.	low	497203	pericentromeric	11034	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	3114663	3114966	AT2TE13480	.	+	ATREP3	Helitron	RC	303	short	1439	high	496873	pericentromeric	10704	no-RdDM	no-CHH	.	.	.	.	.
Chr2	3114989	3115327	AT2TE13485	.	-	HELITRONY1B	Helitron	RC	338	short	414	high	496512	pericentromeric	10343	no-RdDM	no-CHH	.	.	.	.	.
Chr2	3115587	3116951	AT2TE13490	.	+	ATENSPM10	En-Spm	DNA	1364	short	81	medium	494888	pericentromeric	8719	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3117079	3117673	AT2TE13495	.	-	Unassigned	.	Unassigned	594	short	.	low	494166	pericentromeric	7997	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	3117103	3117340	AT2TE13500	.	-	HARBINGER	Harbinger	DNA	237	short	90	medium	494499	pericentromeric	8330	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	3118266	3119694	AT2TE13505	.	-	SIMPLEGUY1	Harbinger	DNA	1428	short	116	medium	492145	pericentromeric	5976	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	3120315	3121017	AT2TE13510	.	+	ATHILA4	Gypsy	LTR	702	short	250	high	490822	pericentromeric	4653	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3121017	3121461	AT2TE13515	.	+	ATHILA4A	Gypsy	LTR	444	short	310	high	490378	pericentromeric	4209	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	3121464	3131230	AT2TE13520	.	+	VANDAL16	MuDR	DNA	9766	long	42	low	480609	pericentromeric	0	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	3131278	3132263	AT2TE13525	.	+	ATHILA4C	Gypsy	LTR	985	short	206	high	479576	pericentromeric	4353	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	3132543	3132772	AT2TE13530	.	+	ATREP1	Helitron	RC	229	short	498	high	479067	pericentromeric	3844	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	3132841	3132902	AT2TE13535	.	+	ATDNA12T3_2	.	DNA	61	tiny	660	high	478937	pericentromeric	3714	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	3135154	3136156	AT2TE13545	.	+	ATIS112A	Harbinger	DNA	1002	short	173	medium	475683	pericentromeric	460	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	3136156	3136590	AT2TE13550	.	+	ATREP19	.	DNA	434	short	189	medium	475249	pericentromeric	26	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	3137311	3137335	AT2TE13555	.	-	HELITRONY3	Helitron	RC	24	tiny	1399	high	474504	pericentromeric	545	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	3137335	3138760	AT2TE13560	.	-	ATREP1	Helitron	RC	1425	short	498	high	473079	pericentromeric	569	no-CHH	no-CHH	.	.	.	.	.
Chr2	3138824	3139273	AT2TE13565	.	-	META1	Copia	LTR	449	short	138	medium	472566	pericentromeric	2058	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	3139307	3140895	AT2TE13570	.	-	ATHILA4D_LTR	Gypsy	LTR	1588	short	106	medium	470944	pericentromeric	2541	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	3141660	3141716	AT2TE13575	.	+	ATGP10	Gypsy	LTR	56	tiny	165	medium	470123	pericentromeric	4894	no-RdDM	no-CHH	.	.	.	.	.
Chr2	3141716	3142440	AT2TE13580	.	+	ATGP10	Gypsy	LTR	724	short	165	medium	469399	pericentromeric	4950	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	3143092	3144613	AT2TE13585	.	-	ATHILA4B_LTR	Gypsy	LTR	1521	short	143	medium	467226	pericentromeric	6326	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	3144621	3145310	AT2TE13590	.	+	ATHILA4	Gypsy	LTR	689	short	250	high	466529	pericentromeric	7855	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3145310	3147937	AT2TE13595	.	+	ATHILA4A	Gypsy	LTR	2627	medium	310	high	463902	pericentromeric	8544	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	3147937	3147971	AT2TE13600	.	+	ATHILA4	Gypsy	LTR	34	tiny	250	high	463868	pericentromeric	11171	no-RdDM	no-CHH	.	.	.	.	.
Chr2	3150041	3150102	AT2TE13610	.	-	META1	Copia	LTR	61	tiny	138	medium	461737	pericentromeric	13275	no-CHH	no-CHH	.	.	.	.	.
Chr2	3150102	3150516	AT2TE13615	.	-	ATCOPIA28	Copia	LTR	414	short	81	medium	461323	pericentromeric	13336	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3150541	3151571	AT2TE13620	.	-	ATHILA4D_LTR	Gypsy	LTR	1030	short	106	medium	460268	pericentromeric	13775	no-RdDM	no-CHH	.	.	.	.	.
Chr2	3151571	3151970	AT2TE13625	.	-	ATHILA4A	Gypsy	LTR	399	short	310	high	459869	pericentromeric	14805	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	3152022	3152152	AT2TE13630	.	-	ATENSPM2	En-Spm	DNA	130	short	114	medium	459687	pericentromeric	15256	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	3152157	3154869	AT2TE13635	.	-	ATHILA4C	Gypsy	LTR	2712	medium	206	high	456970	pericentromeric	15391	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3152708	3153049	AT2TE13640	.	-	ATCOPIA39	Copia	LTR	341	short	5	low	458790	pericentromeric	15942	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3154927	3155520	AT2TE13645	.	-	ATHILA4	Gypsy	LTR	593	short	250	high	456319	pericentromeric	14873	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	3155520	3155663	AT2TE13650	.	-	ATHILA4B_LTR	Gypsy	LTR	143	short	143	medium	456176	pericentromeric	14730	no-CHH	no-RdDM	.	.	.	.	.
Chr2	3155663	3156897	AT2TE13655	.	-	ATHILA4D_LTR	Gypsy	LTR	1234	short	106	medium	454942	pericentromeric	13496	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3156897	3157395	AT2TE13660	.	-	META1	Copia	LTR	498	short	138	medium	454444	pericentromeric	12998	no-RdDM	no-CHH	.	.	.	.	.
Chr2	3157500	3157543	AT2TE13665	.	-	ATCOPIA30	Copia	LTR	43	tiny	33	low	454296	pericentromeric	12850	no-RdDM	no-CHH	.	.	.	.	.
Chr2	3157543	3159478	AT2TE13670	.	-	ATCOPIA29	Copia	LTR	1935	short	19	low	452361	pericentromeric	10915	no-RdDM	no-CHH	.	.	.	.	.
Chr2	3158975	3159000	AT2TE13675	.	-	META1	Copia	LTR	25	tiny	138	medium	452839	pericentromeric	11393	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr2	3159518	3159777	AT2TE13680	.	-	META1	Copia	LTR	259	short	138	medium	452062	pericentromeric	10616	no-RdDM	no-CHH	.	.	.	.	.
Chr2	3160552	3166309	AT2TE13685	.	-	ATCOPIA32	Copia	LTR	5757	long	8	low	445530	pericentromeric	4084	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	3166309	3166334	AT2TE13690	.	-	ATCOPIA32	Copia	LTR	25	tiny	8	low	445505	pericentromeric	4059	no-CHH	no-CHH	.	.	.	.	.
Chr2	3167951	3168060	AT2TE13695	.	-	ATENSPM6	En-Spm	DNA	109	short	151	medium	443779	pericentromeric	2333	no-CHH	no-CHH	.	.	.	.	.
Chr2	3168060	3168774	AT2TE13700	.	-	ATENSPM9	En-Spm	DNA	714	short	97	medium	443065	pericentromeric	1619	no-CHH	no-CHH	.	.	.	.	.
Chr2	3168995	3169375	AT2TE13705	.	+	ATREP10B	Helitron	RC	380	short	491	high	442464	pericentromeric	1018	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	3169375	3170200	AT2TE13710	.	+	ATREP3	Helitron	RC	825	short	1439	high	441639	pericentromeric	193	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	3174359	3175057	AT2TE13730	.	-	BRODYAGA2	MuDR	DNA	698	short	525	high	436782	pericentromeric	407	no-RdDM	no-CHH	.	.	.	.	.
Chr2	3175489	3178727	AT2TE13735	.	+	TA11	L1	LINE	3238	medium	157	medium	433112	pericentromeric	1537	no-RdDM	no-CHH	.	.	.	.	.
Chr2	3179543	3180168	AT2TE13740	.	+	HELITRONY1E	Helitron	RC	625	short	447	high	431671	pericentromeric	5591	no-CHH	no-CHH	.	.	.	.	.
Chr2	3180168	3180824	AT2TE13745	.	+	ATREP10D	Helitron	RC	656	short	1295	high	431015	pericentromeric	6216	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	3180825	3183686	AT2TE13750	.	-	VANDAL3	MuDR	DNA	2861	medium	177	medium	428153	pericentromeric	6873	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	3183721	3186659	AT2TE13755	.	+	VANDAL3	MuDR	DNA	2938	medium	177	medium	425180	pericentromeric	9769	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	3187501	3187850	AT2TE13760	.	+	ATSINE4	.	SINE	349	short	98	medium	423989	pericentromeric	13549	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	3189785	3189903	AT2TE13765	.	-	BRODYAGA2	MuDR	DNA	118	short	525	high	421936	pericentromeric	15833	no-CHH	no-CHH	.	.	.	.	.
Chr2	3189903	3191105	AT2TE13770	.	-	ARNOLDY2	MuDR	DNA	1202	short	288	high	420734	pericentromeric	15951	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	3191105	3191787	AT2TE13775	.	-	ATREP13	Helitron	RC	682	short	106	medium	420052	pericentromeric	17153	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	3191787	3192021	AT2TE13780	.	-	ARNOLDY2	MuDR	DNA	234	short	288	high	419818	pericentromeric	17835	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	3192021	3192234	AT2TE13785	.	+	HELITRONY1E	Helitron	RC	213	short	447	high	419605	pericentromeric	18069	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	3192234	3192432	AT2TE13790	.	+	ATREP4	Helitron	RC	198	short	832	high	419407	pericentromeric	18282	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	3192433	3192625	AT2TE13795	.	+	ATREP4	Helitron	RC	193	short	832	high	419214	pericentromeric	18480	.	.	.	.	.	.	.
Chr2	3192625	3195997	AT2TE13800	.	+	ATREP4	Helitron	RC	3372	medium	832	high	415842	pericentromeric	18673	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	3195999	3197374	AT2TE13805	.	+	ATREP5	Helitron	RC	1375	short	624	high	414465	pericentromeric	22047	PolIV-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	3196411	3196823	+	transcript_id-"90a38283-273d-4137-877e-a425149990eb|3"
Chr2	3197374	3197407	AT2TE13810	.	+	HELITRONY1B	Helitron	RC	33	tiny	414	high	414432	pericentromeric	23331	no-RdDM	no-CHH	.	.	.	.	.
Chr2	3197407	3198631	AT2TE13815	.	-	ATREP1	Helitron	RC	1224	short	498	high	413208	pericentromeric	22107	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	3198631	3198726	AT2TE13820	.	-	HELITRONY1E	Helitron	RC	95	tiny	447	high	413113	pericentromeric	22012	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	3200281	3200475	AT2TE13825	.	-	HELITRON4	Helitron	RC	194	short	199	medium	411364	pericentromeric	20263	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr2	3200475	3201138	AT2TE13830	.	-	HELITRON3	Helitron	RC	663	short	53	medium	410701	pericentromeric	19600	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr2	3201138	3203097	AT2TE13835	.	-	HELITRON1	Helitron	RC	1959	short	130	medium	408742	pericentromeric	17641	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3203107	3203705	AT2TE13840	.	-	ATENSPM10	En-Spm	DNA	598	short	81	medium	408134	pericentromeric	17033	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3203707	3203756	AT2TE13845	.	-	HELITRON4	Helitron	RC	49	tiny	199	medium	408083	pericentromeric	16982	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3203756	3205871	AT2TE13850	.	-	HELITRON5	Helitron	RC	2115	medium	56	medium	405968	pericentromeric	14867	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3205871	3206171	AT2TE13855	.	-	HELITRON3	Helitron	RC	300	short	53	medium	405668	pericentromeric	14567	no-RdDM	no-CHH	.	.	.	.	.
Chr2	3209004	3209188	AT2TE13865	.	-	HELITRON1	Helitron	RC	184	short	130	medium	402651	pericentromeric	11550	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	3209190	3211000	AT2TE13870	.	-	HELITRON5	Helitron	RC	1810	short	56	medium	400839	pericentromeric	9738	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	3211000	3211382	AT2TE13875	.	-	HELITRON2	Helitron	RC	382	short	194	medium	400457	pericentromeric	9356	no-RdDM	no-RdDM	ExpressedAndAnnotated	3210998,3210998	3211233,3211302	+,+	transcript_id-"2a3285e4-0a6d-404f-957e-95d70963400e|6",transcript_id-"6297f09e-e86f-4bea-befb-cf3ded13f306|41"
Chr2	3211488	3211562	AT2TE13880	.	-	HELITRONY1E	Helitron	RC	75	tiny	447	high	400277	pericentromeric	9176	.	.	.	.	.	.	.
Chr2	3211562	3211633	AT2TE13885	.	+	ATREP5	Helitron	RC	71	tiny	624	high	400206	pericentromeric	9105	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	3211633	3211702	AT2TE13890	.	+	ATREP5	Helitron	RC	69	tiny	624	high	400137	pericentromeric	9036	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	3211702	3213374	AT2TE13895	.	-	ATREP3	Helitron	RC	1672	short	1439	high	398465	pericentromeric	7364	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	3213374	3213481	AT2TE13900	.	-	ATREP3	Helitron	RC	107	short	1439	high	398358	pericentromeric	7257	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	3213481	3213696	AT2TE13905	.	+	HELITRONY1E	Helitron	RC	215	short	447	high	398143	pericentromeric	7042	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	3213696	3213765	AT2TE13910	.	+	ATREP4	Helitron	RC	69	tiny	832	high	398074	pericentromeric	6973	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	3214484	3215081	AT2TE13915	.	+	ATGP1	Gypsy	LTR	597	short	144	medium	396758	pericentromeric	5657	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	3215552	3215634	AT2TE13920	.	+	ATGP1	Gypsy	LTR	82	tiny	144	medium	396205	pericentromeric	5104	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr2	3215634	3216758	AT2TE13925	.	+	ATGP2	Gypsy	LTR	1124	short	48	low	395081	pericentromeric	3980	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3216759	3217143	AT2TE13930	.	-	ATDNA12T3_2	.	DNA	384	short	660	high	394696	pericentromeric	3595	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	3217573	3217854	AT2TE13935	.	+	ATHILA2	Gypsy	LTR	281	short	413	high	393985	pericentromeric	2884	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	3219205	3219671	AT2TE13940	.	-	ATCOPIA62	Copia	LTR	466	short	16	low	392168	pericentromeric	1067	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	3222765	3233780	AT2TE13950	.	-	ATLINE1_2	L1	LINE	11015	long	41	low	378059	pericentromeric	1343	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	3232389	3225836	-	transcript_id-"b9de36fe-09d7-43ee-b343-d9a0e0d74756|5"
Chr2	3225682	3230917	AT2TE13955	.	-	ATGP2	Gypsy	LTR	5235	long	48	low	380922	pericentromeric	4260	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	3232389	3225836	-	transcript_id-"b9de36fe-09d7-43ee-b343-d9a0e0d74756|5"
Chr2	3234188	3234485	AT2TE13965	.	-	HELITRON2	Helitron	RC	297	short	194	medium	377354	pericentromeric	5207	no-RdDM	no-CHH	.	.	.	.	.
Chr2	3234485	3237360	AT2TE13970	.	-	HELITRON4	Helitron	RC	2875	medium	199	medium	374479	pericentromeric	2332	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3272391	3272530	AT2TE14150	.	+	ATLINEIII	L1	LINE	139	short	196	medium	339309	pericentromeric	88	no-CHH	no-CHH	.	.	.	.	.
Chr2	3275023	3275258	AT2TE14160	.	+	ATCOPIA50	Copia	LTR	235	short	17	low	336581	pericentromeric	869	no-CHH	no-CHH	.	.	.	.	.
Chr2	3282018	3282135	AT2TE14190	.	-	ATCOPIA50	Copia	LTR	117	short	17	low	329704	pericentromeric	184	no-RdDM	no-CHH	.	.	.	.	.
Chr2	3294359	3294467	AT2TE14250	.	-	ATGP3	Gypsy	LTR	108	short	60	medium	317372	pericentromeric	2029	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	3294467	3295763	AT2TE14255	.	-	ATGP5	Gypsy	LTR	1296	short	86	medium	316076	pericentromeric	2137	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	3301612	3301801	AT2TE14280	.	+	ATCOPIA5	Copia	LTR	189	short	16	low	310038	pericentromeric	0	no-RdDM	no-CHH	.	.	.	.	.
Chr2	3301801	3303203	AT2TE14285	.	+	ATCOPIA8A	Copia	LTR	1402	short	12	low	308636	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	3303203	3303317	AT2TE14290	.	+	ATCOPIA86	Copia	LTR	114	short	7	low	308522	pericentromeric	611	no-CHH	no-CHH	.	.	.	.	.
Chr2	3307693	3307913	AT2TE14310	.	-	ATCOPIA56	Copia	LTR	220	short	16	low	303926	pericentromeric	3120	no-CHH	no-CHH	.	.	.	.	.
Chr2	3307993	3308107	AT2TE14315	.	+	ATCOPIA55	Copia	LTR	114	short	9	low	303732	pericentromeric	3420	no-CHH	no-CHH	.	.	.	.	.
Chr2	3308219	3308973	AT2TE14320	.	+	ATHILA7	Gypsy	LTR	754	short	134	medium	302866	pericentromeric	2880	no-CHH	no-CHH	.	.	.	.	.
Chr2	3308979	3309015	AT2TE14325	.	-	ATHILA7	Gypsy	LTR	36	tiny	134	medium	302824	pericentromeric	2838	no-RdDM	no-CHH	.	.	.	.	.
Chr2	3309015	3311366	AT2TE14330	.	-	ATHILA7	Gypsy	LTR	2351	medium	134	medium	300473	pericentromeric	487	no-CHH	no-CHH	.	.	.	.	.
Chr2	3318352	3318625	AT2TE14370	.	-	TA11	L1	LINE	273	short	157	medium	293214	pericentromeric	5701	no-RdDM	no-CHH	.	.	.	.	.
Chr2	3342504	3342805	AT2TE14490	.	+	ATCOPIA76	Copia	LTR	301	short	7	low	269034	pericentromeric	1388	no-CHH	no-CHH	.	.	.	.	.
Chr2	3344499	3344789	AT2TE14495	.	-	ATCOPIA23	Copia	LTR	290	short	8	low	267050	pericentromeric	2161	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	3344834	3345276	AT2TE14500	.	-	ATCOPIA66	Copia	LTR	442	short	20	low	266563	pericentromeric	1674	no-CHH	no-CHH	.	.	.	.	.
Chr2	3354017	3354401	AT2TE14540	.	-	ATCOPIA22	Copia	LTR	384	short	14	low	257438	pericentromeric	2231	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	3354401	3354431	AT2TE14545	.	-	ATCOPIA22	Copia	LTR	30	tiny	14	low	257408	pericentromeric	2615	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	3355535	3355563	AT2TE14550	.	-	ATLINE1_6	L1	LINE	28	tiny	129	medium	256276	pericentromeric	2471	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	3355563	3356654	AT2TE14555	.	-	ATLINE1_6	L1	LINE	1091	short	129	medium	255185	pericentromeric	1380	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	3375562	3375878	AT2TE14650	.	+	ATCOPIA53	Copia	LTR	316	short	5	low	235961	pericentromeric	2407	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	3379173	3379193	AT2TE14660	.	-	ATCOPIA11	Copia	LTR	21	tiny	26	low	232646	pericentromeric	1550	.	.	.	.	.	.	.
Chr2	3379193	3379763	AT2TE14665	.	-	ATCOPIA15	Copia	LTR	570	short	14	low	232076	pericentromeric	980	no-CHH	no-CHH	.	.	.	.	.
Chr2	3383818	3383983	AT2TE14680	.	-	ATCOPIA7	Copia	LTR	165	short	5	low	227856	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	3391791	3391838	AT2TE14720	.	-	ATHILA7	Gypsy	LTR	47	tiny	134	medium	220001	pericentromeric	4015	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	3438370	3438428	AT2TE14960	.	-	ATREP12	Helitron	RC	58	tiny	22	low	173411	pericentromeric	313	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	3440471	3440652	AT2TE14970	.	-	ATCOPIA85	Copia	LTR	181	short	7	low	171187	pericentromeric	1310	no-CHH	no-CHH	.	.	.	.	.
Chr2	3441790	3441822	AT2TE14975	.	-	ATREP12	Helitron	RC	32	tiny	22	low	170017	pericentromeric	1896	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	3454197	3454406	AT2TE15030	.	+	ENDOVIR1	Copia	LTR	209	short	15	low	157433	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	3455420	3455661	AT2TE15035	.	-	ATCOPIA11	Copia	LTR	241	short	26	low	156178	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	3459139	3460112	AT2TE15045	.	-	ATCOPIA11	Copia	LTR	973	short	26	low	151727	pericentromeric	1660	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	3460112	3460171	AT2TE15050	.	-	ATCOPIA15	Copia	LTR	59	tiny	14	low	151668	pericentromeric	2633	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	3479648	3480558	AT2TE15150	.	-	ATCOPIA49	Copia	LTR	910	short	34	low	131281	pericentromeric	1316	no-CHH	no-CHH	.	.	.	.	.
Chr2	3481084	3482066	AT2TE15155	.	-	Unassigned	.	Unassigned	982	short	.	low	129773	pericentromeric	1251	no-CHH	no-CHH	.	.	.	.	.
Chr2	3481566	3482049	AT2TE15160	.	-	TA11	L1	LINE	483	short	157	medium	129790	pericentromeric	1268	no-CHH	no-CHH	.	.	.	.	.
Chr2	3512230	3512447	AT2TE15310	.	+	TNAT1A	.	DNA	217	short	162	medium	99392	pericentromeric	2326	no-RdDM	no-CHH	.	.	.	.	.
Chr2	3512581	3512736	AT2TE15315	.	+	TNAT1A	.	DNA	155	short	162	medium	99103	pericentromeric	2037	no-CHH	no-CHH	.	.	.	.	.
Chr2	3512973	3513188	AT2TE15320	.	+	ATCOPIA58	Copia	LTR	215	short	18	low	98651	pericentromeric	1585	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	3513688	3514214	AT2TE15325	.	+	HELITRONY2	Helitron	RC	526	short	198	medium	97625	pericentromeric	559	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	3514256	3514378	AT2TE15330	.	-	ATCOPIA62	Copia	LTR	122	short	16	low	97461	pericentromeric	395	no-CHH	no-CHH	.	.	.	.	.
Chr2	3517282	3517482	AT2TE15340	.	-	RathE3_cons	.	RathE3_cons	200	short	104	medium	94357	pericentromeric	0	no-RdDM	no-CHH	.	.	.	.	.
Chr2	3521216	3521390	AT2TE15350	.	-	ATLINE1A	L1	LINE	174	short	289	high	90449	pericentromeric	0	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	3527953	3528142	AT2TE15380	.	-	ATDNAI27T9C	MuDR	DNA	189	short	108	medium	83697	pericentromeric	565	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	3528628	3530340	AT2TE15385	.	+	ATREP18	.	DNA	1712	short	391	high	81499	pericentromeric	1240	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	3530340	3530468	AT2TE15390	.	+	ATREP18	.	DNA	128	short	391	high	81371	pericentromeric	2952	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	3531451	3531674	AT2TE15395	.	-	TAG2	HAT	DNA	223	short	86	medium	80165	pericentromeric	4063	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	3531974	3532287	AT2TE15400	.	-	ATHILA4B_LTR	Gypsy	LTR	313	short	143	medium	79552	pericentromeric	4586	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	3532287	3532348	AT2TE15405	.	-	ATHILA4A	Gypsy	LTR	61	tiny	310	high	79491	pericentromeric	4899	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	3533105	3533345	AT2TE15410	.	+	ATGP10	Gypsy	LTR	240	short	165	medium	78494	pericentromeric	5717	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	3533345	3539334	AT2TE15415	.	+	ATGP10	Gypsy	LTR	5989	long	165	medium	72505	pericentromeric	5957	no-RdDM	no-RdDM	ExpressedAndAnnotated	3538072,3538082	3539256,3539256	+,+	transcript_id-"f2556ca4-3722-4d62-90cd-04922e4067e5|20",transcript_id-"e7b8d668-d840-4e69-a3b2-813045c4f9e0|6"
Chr2	3539336	3539390	AT2TE15420	.	+	ATGP10	Gypsy	LTR	54	tiny	165	medium	72449	pericentromeric	11948	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr2	3539390	3540227	AT2TE15425	.	-	ATHILA4B_LTR	Gypsy	LTR	837	short	143	medium	71612	pericentromeric	12002	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	3540227	3540252	AT2TE15430	.	-	ATHILA4B_LTR	Gypsy	LTR	25	tiny	143	medium	71587	pericentromeric	12839	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3541659	3541818	AT2TE15435	.	+	ATHILA6A	Gypsy	LTR	159	short	247	high	70021	pericentromeric	14271	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	3541818	3545190	AT2TE15440	.	+	ATHILA6A	Gypsy	LTR	3372	medium	247	high	66649	pericentromeric	14430	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3545190	3545245	AT2TE15445	.	+	ATHILA	Gypsy	LTR	55	tiny	198	medium	66594	pericentromeric	17802	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr2	3545245	3545748	AT2TE15450	.	+	ATHILA6A	Gypsy	LTR	503	short	247	high	66091	pericentromeric	17857	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr2	3545748	3545791	AT2TE15455	.	+	ATHILA6A	Gypsy	LTR	43	tiny	247	high	66048	pericentromeric	18360	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr2	3545791	3546062	AT2TE15460	.	+	ATHILA6A	Gypsy	LTR	271	short	247	high	65777	pericentromeric	18403	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr2	3546087	3546243	AT2TE15465	.	-	ATHAT1	HAT	DNA	156	short	105	medium	65596	pericentromeric	18699	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr2	3546592	3546828	AT2TE15470	.	-	ATHILA6B	Gypsy	LTR	236	short	134	medium	65011	pericentromeric	19204	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3546837	3547823	AT2TE15475	.	-	ATHAT1	HAT	DNA	986	short	105	medium	64016	pericentromeric	19449	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3547823	3547927	AT2TE15480	.	-	ATHAT1	HAT	DNA	104	short	105	medium	63912	pericentromeric	20435	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	3547927	3547953	AT2TE15485	.	-	ATHILA	Gypsy	LTR	26	tiny	198	medium	63886	pericentromeric	20539	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3547953	3552491	AT2TE15490	.	-	ATHILA	Gypsy	LTR	4538	medium	198	medium	59348	pericentromeric	20565	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	3552455	3551843	-	transcript_id-"e2f3a687-ac81-41a9-92c6-7efe5a8a69de|3"
Chr2	3552888	3554461	AT2TE15495	.	-	ATENSPM3	En-Spm	DNA	1573	short	98	medium	57378	pericentromeric	22021	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3554461	3556283	AT2TE15500	.	+	ATHILA2	Gypsy	LTR	1822	short	413	high	55556	pericentromeric	20199	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3556283	3556317	AT2TE15505	.	+	ATHILA5	Gypsy	LTR	34	tiny	131	medium	55522	pericentromeric	20165	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3556317	3558079	AT2TE15510	.	+	ATHILA5	Gypsy	LTR	1762	short	131	medium	53760	pericentromeric	18403	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3558114	3558181	AT2TE15515	.	-	ATHILA4D_LTR	Gypsy	LTR	67	tiny	106	medium	53658	pericentromeric	18301	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3558187	3559719	AT2TE15520	.	-	ATHILA4B_LTR	Gypsy	LTR	1532	short	143	medium	52120	pericentromeric	16763	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	3559719	3561359	AT2TE15525	.	-	ATHILA4A	Gypsy	LTR	1640	short	310	high	50480	pericentromeric	15123	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	3560647	3560883	AT2TE15530	.	-	ATHILA4	Gypsy	LTR	236	short	250	high	50956	pericentromeric	15599	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	3560883	3561061	AT2TE15535	.	-	ATHILA4A	Gypsy	LTR	178	short	310	high	50778	pericentromeric	15421	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	3561389	3561427	AT2TE15540	.	+	ATHILA4A	Gypsy	LTR	38	tiny	310	high	50412	pericentromeric	15055	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	3562163	3562227	AT2TE15545	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	49612	pericentromeric	14255	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	3562650	3562712	AT2TE15550	.	+	ATDNA12T3_2	.	DNA	62	tiny	660	high	49127	pericentromeric	13770	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	3563125	3563195	AT2TE15555	.	+	ATDNA12T3_2	.	DNA	70	tiny	660	high	48644	pericentromeric	13287	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	3563211	3566075	AT2TE15560	.	+	ATREP3	Helitron	RC	2864	medium	1439	high	45764	pericentromeric	10407	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	3566076	3571742	AT2TE15565	.	-	ATLINE1_2	L1	LINE	5666	long	41	low	40097	pericentromeric	4740	no-RdDM	no-RdDM	ExpressedAndAnnotated	3566460	3566077	-	transcript_id-"e3f3a51b-c732-4b56-a6c3-308dc3a88b3f|3"
Chr2	3570253	3570527	AT2TE15570	.	-	ATLINE1_1	L1	LINE	274	short	61	medium	41312	pericentromeric	5955	no-RdDM	no-CHH	.	.	.	.	.
Chr2	3570529	3570631	AT2TE15575	.	-	ATLINE2	L1	LINE	102	short	138	medium	41208	pericentromeric	5851	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3571777	3572919	AT2TE15580	.	+	ATREP10D	Helitron	RC	1142	short	1295	high	38920	pericentromeric	3563	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr2	3572919	3573118	AT2TE15585	.	-	ATREP3	Helitron	RC	199	short	1439	high	38721	pericentromeric	3364	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	3573423	3575224	AT2TE15590	.	+	ATHILA6A	Gypsy	LTR	1801	short	247	high	36615	pericentromeric	1258	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	3575224	3575268	AT2TE15595	.	+	ATHILA6A	Gypsy	LTR	44	tiny	247	high	36571	pericentromeric	1214	no-CHH	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	3575485	3575737	AT2TE15600	.	-	ATHATN8	HAT	DNA	252	short	15	low	36102	pericentromeric	745	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	3580390	3580436	AT2TE15620	.	+	ATREP11	Helitron	RC	46	tiny	841	high	31403	pericentromeric	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	3580436	3580464	AT2TE15625	.	+	ATREP10B	Helitron	RC	28	tiny	491	high	31375	pericentromeric	40	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	3580464	3582108	AT2TE15630	.	+	HELITRONY3	Helitron	RC	1644	short	1399	high	29731	pericentromeric	68	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	3582108	3582247	AT2TE15635	.	-	ATREP11	Helitron	RC	139	short	841	high	29592	pericentromeric	1712	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	3583131	3583238	AT2TE15640	.	+	HELITRONY3	Helitron	RC	107	short	1399	high	28601	pericentromeric	1181	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	3583238	3583979	AT2TE15645	.	-	ATREP1	Helitron	RC	741	short	498	high	27860	pericentromeric	440	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	3586372	3594041	AT2TE15655	.	-	VANDAL17	MuDR	DNA	7669	long	178	medium	17798	pericentromeric	94	no-RdDM	no-RdDM	ExpressedAndAnnotated	3586596,3588850	3587142,3589123	+,+	transcript_id-"75bd63f3-b884-4c1e-8fd7-cad37542541c|15",transcript_id-"b3b8bbb7-5641-488c-908a-3593de900744|4"
Chr2	3595722	3597855	AT2TE15660	.	-	HARBINGER	Harbinger	DNA	2133	medium	90	medium	13984	pericentromeric	9444	no-RdDM	no-RdDM	ExpressedAndAnnotated	3597572,3597578	3595887,3595891	-,-	transcript_id-"796a026d-61c3-483f-b408-f54e7ff99425|78",transcript_id-"61ac3889-e591-4bbc-b6e6-e41e0d2e4572|230"
Chr2	3598055	3598805	AT2TE15665	.	+	ATREP13	Helitron	RC	750	short	106	medium	13034	pericentromeric	11777	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	3598805	3598897	AT2TE15670	.	+	ATREP13	Helitron	RC	92	tiny	106	medium	12942	pericentromeric	12527	no-CHH	no-CHH	.	.	.	.	.
Chr2	3600150	3601950	AT2TE15675	.	-	ATHILA3	Gypsy	LTR	1800	short	243	high	9889	pericentromeric	13035	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	3601950	3601979	AT2TE15680	.	-	ATHILA0_I	Gypsy	LTR	29	tiny	138	medium	9860	pericentromeric	13006	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	3601980	3602002	AT2TE15685	.	-	ATHILA3	Gypsy	LTR	23	tiny	243	high	9837	pericentromeric	12983	.	.	.	.	.	.	.
Chr2	3603123	3603728	AT2TE15690	.	-	ATHILA4B_LTR	Gypsy	LTR	605	short	143	medium	8111	pericentromeric	11257	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	3604312	3605677	AT2TE15695	.	+	ATHILA2	Gypsy	LTR	1365	short	413	high	6162	pericentromeric	9308	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	3636369	3645326	AT2TE15880	.	-	ATHILA6A	Gypsy	LTR	8957	long	247	high	2946	pericentromeric	5829	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	3638239,3639477,3639477	3637320,3637320,3639317	-,-,-	transcript_id-"e4cd32dc-e967-4b0e-b3d6-20c5fda867c4|11",transcript_id-"28302249-857d-41bf-b850-bb692a021154|68",transcript_id-"35993060-0c00-4375-b717-a68bd3f5c9fb|3"
Chr2	3649767	3650108	AT2TE15900	.	-	ATGP10	Gypsy	LTR	341	short	165	medium	16344	pericentromeric	1047	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	3652518	3652552	AT2TE15910	.	-	ATHILA4D_LTR	Gypsy	LTR	34	tiny	106	medium	19095	pericentromeric	283	no-CHH	DCL3-RdDM	.	.	.	.	.
Chr2	3652552	3652585	AT2TE15915	.	-	ATHILA4A	Gypsy	LTR	33	tiny	310	high	19129	pericentromeric	317	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	3652585	3655719	AT2TE15920	.	-	ATHILA4A	Gypsy	LTR	3134	medium	310	high	19162	pericentromeric	350	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	3655719	3658240	AT2TE15925	.	-	ATHILA4C	Gypsy	LTR	2521	medium	206	high	22296	pericentromeric	3484	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	3658241	3659011	AT2TE15930	.	+	ATLANTYS1	Gypsy	LTR	770	short	153	medium	24818	pericentromeric	6006	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr2	3664822	3664934	AT2TE15960	.	-	ATHILA4A	Gypsy	LTR	112	short	310	high	31399	pericentromeric	12587	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	3664936	3665626	AT2TE15965	.	+	HELITRONY1A	Helitron	RC	690	short	271	high	31513	pericentromeric	12701	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	3665626	3665793	AT2TE15970	.	+	HELITRONY1B	Helitron	RC	167	short	414	high	32203	pericentromeric	13391	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	3667038	3671940	AT2TE15975	.	+	ATCOPIA96	Copia	LTR	4902	medium	16	low	33615	pericentromeric	14803	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	3672929	3673319	AT2TE15980	.	-	BRODYAGA1	MuDR	DNA	390	short	251	high	39506	pericentromeric	20694	no-CHH	no-RdDM	.	.	.	.	.
Chr2	3674408	3675400	AT2TE15985	.	-	ATREP11	Helitron	RC	993	short	841	high	40984	pericentromeric	22172	.	.	.	.	.	.	.
Chr2	3675404	3676269	AT2TE15990	.	-	HELITRON2	Helitron	RC	865	short	194	medium	41981	pericentromeric	23169	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	3676269	3680275	AT2TE15995	.	-	ATHILA4C	Gypsy	LTR	4006	medium	206	high	42846	pericentromeric	23028	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3676755	3678366	AT2TE16000	.	+	ATHILA3	Gypsy	LTR	1611	short	243	high	43332	pericentromeric	24520	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3680275	3681190	AT2TE16005	.	+	ATHILA6A	Gypsy	LTR	915	short	247	high	46852	pericentromeric	22113	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	3681190	3684152	AT2TE16010	.	-	ATHILA2	Gypsy	LTR	2962	medium	413	high	47767	pericentromeric	19151	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	3684248	3684831	AT2TE16015	.	-	ATHILA7	Gypsy	LTR	583	short	134	medium	50825	pericentromeric	18472	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3684831	3684945	AT2TE16020	.	-	ATHILA4C	Gypsy	LTR	114	short	206	high	51408	pericentromeric	18358	no-RdDM	no-CHH	.	.	.	.	.
Chr2	3687123	3692178	AT2TE16030	.	-	ATCOPIA33	Copia	LTR	5055	long	6	low	53700	pericentromeric	11125	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	3687534,3687420	3687217,3687248	-,-	transcript_id-"2b6c2f8f-f475-42b2-a168-ee0a6f7df429|5",transcript_id-"c449802c-f313-4e94-93bf-6aa5b98413ed|5"
Chr2	3702911	3703046	AT2TE16080	.	-	ATGP10	Gypsy	LTR	135	short	165	medium	69488	pericentromeric	257	no-CHH	no-CHH	.	.	.	.	.
Chr2	3705806	3706431	AT2TE16090	.	-	ATGP10	Gypsy	LTR	625	short	165	medium	72383	pericentromeric	212	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3708959	3710191	AT2TE16100	.	-	ATHILA4D_LTR	Gypsy	LTR	1232	short	106	medium	75536	pericentromeric	3365	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3710192	3710982	AT2TE16105	.	+	ATLANTYS1	Gypsy	LTR	790	short	153	medium	76769	pericentromeric	4598	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3716820	3717400	AT2TE16130	.	+	ATHILA4	Gypsy	LTR	580	short	250	high	83397	pericentromeric	11226	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3720147	3720205	AT2TE16140	.	-	ATHILA4A	Gypsy	LTR	58	tiny	310	high	86724	pericentromeric	14553	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3720205	3721518	AT2TE16145	.	+	HELITRONY1A	Helitron	RC	1313	short	271	high	86782	pericentromeric	14611	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	3721518	3722140	AT2TE16150	.	-	ATHILA4A	Gypsy	LTR	622	short	310	high	88095	pericentromeric	15924	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	3722140	3722410	AT2TE16155	.	+	ATREP5	Helitron	RC	270	short	624	high	88717	pericentromeric	16546	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3722410	3725767	AT2TE16160	.	-	ATLINE2	L1	LINE	3357	medium	138	medium	88987	pericentromeric	16816	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3726670	3727339	AT2TE16165	.	+	ATENSPM10	En-Spm	DNA	669	short	81	medium	93247	pericentromeric	21076	no-RdDM	no-RdDM	ExpressedAndAnnotated	3726397,3726397,3726397	3727757,3727910,3727910	+,+,+	transcript_id-"ced68bc7-f61f-41ef-b516-6d785af8e332|3",transcript_id-"1a045783-d6d6-41ce-bdf6-bcfcd41fadb9|4",transcript_id-"ad1fadbb-9168-4752-8750-008e6815c4ec|5"
Chr2	3727339	3727724	AT2TE16170	.	+	ATENSPM10	En-Spm	DNA	385	short	81	medium	93916	pericentromeric	21745	no-RdDM	no-CHH	ExpressedAndAnnotated	3726397,3726397,3726397	3727757,3727910,3727910	+,+,+	transcript_id-"ced68bc7-f61f-41ef-b516-6d785af8e332|3",transcript_id-"1a045783-d6d6-41ce-bdf6-bcfcd41fadb9|4",transcript_id-"ad1fadbb-9168-4752-8750-008e6815c4ec|5"
Chr2	3728280	3728610	AT2TE16175	.	-	ATENSPM9	En-Spm	DNA	330	short	97	medium	94857	pericentromeric	22686	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3728861	3731260	AT2TE16180	.	-	ATHILA4C	Gypsy	LTR	2399	medium	206	high	95438	pericentromeric	23267	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3731260	3731280	AT2TE16185	.	+	ATHILA2	Gypsy	LTR	20	tiny	413	high	97837	pericentromeric	25666	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	3731280	3740503	AT2TE16190	.	+	ATHILA2	Gypsy	LTR	9223	long	413	high	97857	pericentromeric	25686	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	3737022	3737657	AT2TE16195	.	+	ATHILA6B	Gypsy	LTR	635	short	134	medium	103599	pericentromeric	31428	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3740503	3740652	AT2TE16205	.	+	ATHILA2	Gypsy	LTR	149	short	413	high	107080	pericentromeric	34909	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	3740652	3740857	AT2TE16210	.	+	ATHILA4A	Gypsy	LTR	205	short	310	high	107229	pericentromeric	35058	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	3740943	3742095	AT2TE16215	.	-	ATHILA4C	Gypsy	LTR	1152	short	206	high	107520	pericentromeric	35349	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3742095	3749364	AT2TE16220	.	-	HELITRON2	Helitron	RC	7269	long	194	medium	108672	pericentromeric	30807	no-RdDM	no-RdDM	ExpressedAndAnnotated	3749453	3748488	-	transcript_id-"290b4549-a924-484f-a402-bf251467dd72|12"
Chr2	3749367	3750177	AT2TE16225	.	-	HELITRONY2	Helitron	RC	810	short	198	medium	115944	pericentromeric	29994	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	3749453	3748488	-	transcript_id-"290b4549-a924-484f-a402-bf251467dd72|12"
Chr2	3750177	3766283	AT2TE16230	.	-	ATHILA2	Gypsy	LTR	16106	long	413	high	116754	pericentromeric	13888	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	3752535	3763203	AT2TE16235	.	-	ATLANTYS3	Gypsy	LTR	10668	long	142	medium	119112	pericentromeric	16968	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	3766283	3766910	AT2TE16245	.	-	ATHILA6A	Gypsy	LTR	627	short	247	high	132860	pericentromeric	13261	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	3766910	3767233	AT2TE16250	.	-	ATHILA6B	Gypsy	LTR	323	short	134	medium	133487	pericentromeric	12938	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	3767233	3770915	AT2TE16255	.	-	ATHILA6A	Gypsy	LTR	3682	medium	247	high	133810	pericentromeric	9256	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	3770915	3770956	AT2TE16260	.	-	ATHILA6B	Gypsy	LTR	41	tiny	134	medium	137492	pericentromeric	9215	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	3770956	3773386	AT2TE16265	.	-	ATHILA2	Gypsy	LTR	2430	medium	413	high	137533	pericentromeric	6785	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	3773391	3779884	AT2TE16270	.	-	HELITRONY2	Helitron	RC	6493	long	198	medium	139968	pericentromeric	287	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	3778066	3778707	AT2TE16275	.	+	ATREP15	Helitron	RC	641	short	1003	high	144643	pericentromeric	1464	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	3778741	3778879	AT2TE16280	.	-	HELITRON2	Helitron	RC	138	short	194	medium	145318	pericentromeric	1292	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	3779885	3779938	AT2TE16285	.	-	HELITRON2	Helitron	RC	53	tiny	194	medium	146462	pericentromeric	233	no-CHH	no-RdDM	.	.	.	.	.
Chr2	3785519	3794054	AT2TE16310	.	-	ATENSPM7	En-Spm	DNA	8535	long	74	medium	152096	pericentromeric	917	no-RdDM	no-RdDM	ExpressedAndAnnotated	3786160,3786311	3785979,3785979	-,-	transcript_id-"f93a12da-4310-4fe9-a48b-78192e5f94b6|3",transcript_id-"a359c727-33ea-4250-b1b5-a6b7d1138ff3|11"
Chr2	3795196	3796200	AT2TE16315	.	-	ATCOPIA95	Copia	LTR	1004	short	72	medium	161773	pericentromeric	51	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3796206	3796457	AT2TE16320	.	+	VANDAL13	MuDR	DNA	251	short	38	low	162783	pericentromeric	772	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	3796607	3796789	AT2TE16325	.	+	ATHAT1	HAT	DNA	182	short	105	medium	163184	pericentromeric	440	RDR6-RdDM	RDR6-RdDM	.	.	.	.	.
Chr2	3798603	3798774	AT2TE16330	.	-	ATENSPM11	En-Spm	DNA	171	short	47	low	165180	pericentromeric	1173	no-CHH	no-CHH	.	.	.	.	.
Chr2	3798774	3799489	AT2TE16335	.	-	ATREP3	Helitron	RC	715	short	1439	high	165351	pericentromeric	1344	no-CHH	no-CHH	ExpressedAndAnnotated	3799800	3799221	-	transcript_id-"a2242579-65dc-40a3-b27c-b66bf18b8220|3"
Chr2	3799776	3803531	AT2TE16340	.	-	VANDAL17	MuDR	DNA	3755	medium	178	medium	166353	pericentromeric	2346	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	3800684	3800780	AT2TE16345	.	-	VANDAL17	MuDR	DNA	96	tiny	178	medium	167261	pericentromeric	3254	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	3803667	3803735	AT2TE16355	.	-	ATREP11	Helitron	RC	68	tiny	841	high	170244	pericentromeric	6237	no-CHH	no-CHH	.	.	.	.	.
Chr2	3803735	3804225	AT2TE16360	.	+	ATREP4	Helitron	RC	490	short	832	high	170312	pericentromeric	6305	no-RdDM	no-CHH	.	.	.	.	.
Chr2	3804225	3808133	AT2TE16365	.	-	ATENSPM11	En-Spm	DNA	3908	medium	47	low	170802	pericentromeric	6795	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	3804857	3804879	AT2TE16370	.	-	ATENSPM10	En-Spm	DNA	22	tiny	81	medium	171434	pericentromeric	7427	no-RdDM	no-CHH	.	.	.	.	.
Chr2	3806895	3806931	AT2TE16380	.	-	ATENSPM10	En-Spm	DNA	36	tiny	81	medium	173472	pericentromeric	9465	no-RdDM	no-CHH	.	.	.	.	.
Chr2	3808136	3809217	AT2TE16385	.	-	ATHILA4	Gypsy	LTR	1081	short	250	high	174713	pericentromeric	10706	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	3809217	3812552	AT2TE16390	.	-	ATENSPM10	En-Spm	DNA	3335	medium	81	medium	175794	pericentromeric	11787	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	3813106	3813813	AT2TE16395	.	-	ATCOPIA95	Copia	LTR	707	short	72	medium	179683	pericentromeric	15676	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3813824	3815597	AT2TE16400	.	-	ATHILA4B_LTR	Gypsy	LTR	1773	short	143	medium	180401	pericentromeric	16394	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3815597	3815918	AT2TE16405	.	-	ATENSPM6	En-Spm	DNA	321	short	151	medium	182174	pericentromeric	18167	no-RdDM	no-CHH	.	.	.	.	.
Chr2	3815918	3816061	AT2TE16410	.	-	ATHILA4B_LTR	Gypsy	LTR	143	short	143	medium	182495	pericentromeric	18488	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	3816061	3817016	AT2TE16415	.	-	ATHILA4	Gypsy	LTR	955	short	250	high	182638	pericentromeric	18631	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	3819691	3816524	-	transcript_id-"5b90f50c-6422-4ac3-beb1-e18507811d16|11"
Chr2	3817016	3818989	AT2TE16420	.	-	ATENSPM9	En-Spm	DNA	1973	short	97	medium	183593	pericentromeric	19586	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	3819691	3816524	-	transcript_id-"5b90f50c-6422-4ac3-beb1-e18507811d16|11"
Chr2	3818989	3819690	AT2TE16425	.	-	ATENSPM5	En-Spm	DNA	701	short	111	medium	185566	pericentromeric	21559	no-RdDM	no-RdDM	ExpressedAndAnnotated	3819691	3816524	-	transcript_id-"5b90f50c-6422-4ac3-beb1-e18507811d16|11"
Chr2	3819848	3820355	AT2TE16430	.	+	ATREP11	Helitron	RC	507	short	841	high	186425	pericentromeric	22418	no-RdDM	no-CHH	.	.	.	.	.
Chr2	3820355	3820574	AT2TE16435	.	-	ATENSPM9	En-Spm	DNA	219	short	97	medium	186932	pericentromeric	22925	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr2	3820574	3821095	AT2TE16440	.	-	ATHILA4A	Gypsy	LTR	521	short	310	high	187151	pericentromeric	23144	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	3821227	3823532	AT2TE16445	.	-	ATHILA4	Gypsy	LTR	2305	medium	250	high	187804	pericentromeric	23797	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	3823543	3823797	AT2TE16450	.	-	ATCOPIA95	Copia	LTR	254	short	72	medium	190120	pericentromeric	26113	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3823959	3825125	AT2TE16455	.	+	ATHILA4	Gypsy	LTR	1166	short	250	high	190536	pericentromeric	26529	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3825579	3825612	AT2TE16460	.	+	ROMANIAT5	Copia	LTR	33	tiny	49	low	192156	pericentromeric	28149	RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	3825613	3826213	AT2TE16465	.	+	ATHILA2	Gypsy	LTR	600	short	413	high	192190	pericentromeric	28183	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	3826213	3827838	AT2TE16470	.	+	ATHILA6B	Gypsy	LTR	1625	short	134	medium	192790	pericentromeric	28783	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3827838	3832085	AT2TE16475	.	+	ATHILA2	Gypsy	LTR	4247	medium	413	high	194415	pericentromeric	30408	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	3832105	3832841	AT2TE16480	.	+	ATREP11	Helitron	RC	736	short	841	high	198682	pericentromeric	34675	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	3832852	3835797	AT2TE16485	.	-	ATHILA4A	Gypsy	LTR	2945	medium	310	high	199429	pericentromeric	35422	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	3832864	3833932	AT2TE16490	.	-	ATHILA4A	Gypsy	LTR	1068	short	310	high	199441	pericentromeric	35434	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	3835797	3835867	AT2TE16495	.	-	ATHILA4	Gypsy	LTR	70	tiny	250	high	202374	pericentromeric	38367	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr2	3836125	3837892	AT2TE16500	.	-	Unassigned	.	Unassigned	1767	short	.	low	202702	pericentromeric	38695	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3837023	3837880	AT2TE16505	.	-	ATLINE2	L1	LINE	857	short	138	medium	203600	pericentromeric	39593	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3837880	3842825	AT2TE16510	.	+	ATENSPM5	En-Spm	DNA	4945	medium	111	medium	204457	pericentromeric	40450	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	3841576	3841607	AT2TE16515	.	+	ATENSPM5	En-Spm	DNA	31	tiny	111	medium	208153	pericentromeric	44146	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3842886	3843441	AT2TE16520	.	-	ATLINEIII	L1	LINE	555	short	196	medium	209463	pericentromeric	45456	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3844437	3845315	AT2TE16525	.	+	ATHILA0_I	Gypsy	LTR	878	short	138	medium	211014	pericentromeric	47007	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	3845315	3852606	AT2TE16530	.	-	ATHILA4C	Gypsy	LTR	7291	long	206	high	211892	pericentromeric	47885	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	3848286,3848930,3848930	3847577,3847580,3847611	-,-,-	transcript_id-"d658ffab-0aba-4450-89da-4ababf48724f|3",transcript_id-"a0cbdc9b-3a89-48e1-87ad-04ce20b6cb0c|14",transcript_id-"5c7adf56-511a-4792-8af3-db82b531ab80|3"
Chr2	3853939	3854065	AT2TE16535	.	+	ATIS112A	Harbinger	DNA	126	short	173	medium	220516	pericentromeric	56509	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	3854065	3854811	AT2TE16540	.	-	ATHILA4C	Gypsy	LTR	746	short	206	high	220642	pericentromeric	56635	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3854811	3858388	AT2TE16545	.	-	ATHILA	Gypsy	LTR	3577	medium	198	medium	221388	pericentromeric	57381	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	3858388	3859010	AT2TE16550	.	-	ATHILA	Gypsy	LTR	622	short	198	medium	224965	pericentromeric	60958	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	3859010	3859318	AT2TE16555	.	-	ATHILA6A	Gypsy	LTR	308	short	247	high	225587	pericentromeric	61580	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3859318	3862946	AT2TE16560	.	-	ATHILA	Gypsy	LTR	3628	medium	198	medium	225895	pericentromeric	61888	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	3862946	3863316	AT2TE16565	.	-	ATHILA	Gypsy	LTR	370	short	198	medium	229523	pericentromeric	65516	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	3863316	3865228	AT2TE16570	.	-	ATHILA4C	Gypsy	LTR	1912	short	206	high	229893	pericentromeric	65886	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	3865228	3875676	AT2TE16575	.	-	ATHILA2	Gypsy	LTR	10448	long	413	high	231805	pericentromeric	62850	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	3875678	3879089	AT2TE16580	.	-	ATHILA2	Gypsy	LTR	3411	medium	413	high	242255	pericentromeric	59437	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	3878779	3877636	-	transcript_id-"0020fef5-f136-4316-be40-14fd4ad2293c|34"
Chr2	3876711	3878306	AT2TE16585	.	-	ATHILA3	Gypsy	LTR	1595	short	243	high	243288	pericentromeric	60220	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	3878377	3878399	AT2TE16590	.	-	ATHILA2	Gypsy	LTR	22	tiny	413	high	244954	pericentromeric	60127	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	3879089	3882525	AT2TE16595	.	-	ATHILA6B	Gypsy	LTR	3436	medium	134	medium	245666	pericentromeric	56001	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr2	3882537	3884137	AT2TE16600	.	-	ATHILA	Gypsy	LTR	1600	short	198	medium	249114	pericentromeric	54389	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	3884138	3888503	AT2TE16605	.	-	ATHILA2	Gypsy	LTR	4365	medium	413	high	250715	pericentromeric	50023	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	3888503	3888839	AT2TE16610	.	+	TAT1_ATH	Gypsy	LTR	336	short	87	medium	255080	pericentromeric	49687	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	3889208	3890270	AT2TE16615	.	+	ATLANTYS1	Gypsy	LTR	1062	short	153	medium	255785	pericentromeric	48256	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3890270	3895938	AT2TE16620	.	-	ATGP10	Gypsy	LTR	5668	long	165	medium	256847	pericentromeric	42588	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	3895938	3896689	AT2TE16625	.	-	ATGP10	Gypsy	LTR	751	short	165	medium	262515	pericentromeric	41837	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	3898008	3898038	AT2TE16630	.	+	ATHILA6A	Gypsy	LTR	30	tiny	247	high	264585	pericentromeric	40488	no-CHH	no-CHH	.	.	.	.	.
Chr2	3898038	3900548	AT2TE16635	.	+	ATHILA3	Gypsy	LTR	2510	medium	243	high	264615	pericentromeric	37978	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	3899117	3899170	AT2TE16640	.	+	ATHILA3	Gypsy	LTR	53	tiny	243	high	265694	pericentromeric	39356	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3900548	3902230	AT2TE16645	.	-	ATGP1	Gypsy	LTR	1682	short	144	medium	267125	pericentromeric	36296	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	3902686	3903643	AT2TE16650	.	+	ATLINE1A	L1	LINE	957	short	289	high	269263	pericentromeric	34883	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	3903660	3903683	AT2TE16655	.	+	HELITRON3	Helitron	RC	23	tiny	53	medium	270237	pericentromeric	34843	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3903683	3913850	AT2TE16660	.	+	HELITRON3	Helitron	RC	10167	long	53	medium	270260	pericentromeric	24676	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	3906168	3907788	AT2TE16665	.	-	ATHILA3	Gypsy	LTR	1620	short	243	high	272745	pericentromeric	30738	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	3913850	3913999	AT2TE16690	.	+	HELITRON1	Helitron	RC	149	short	130	medium	280427	pericentromeric	24527	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	3914161	3916406	AT2TE16695	.	+	HELITRON3	Helitron	RC	2245	medium	53	medium	280738	pericentromeric	22120	no-RdDM	no-RdDM	ExpressedAndAnnotated	3914460	3913979	-	transcript_id-"daa7ac28-59e1-48bf-9f94-ba39cecdd2bf|4"
Chr2	3916406	3916678	AT2TE16700	.	+	HELITRON3	Helitron	RC	272	short	53	medium	282983	pericentromeric	21848	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	3916678	3919159	AT2TE16705	.	+	HELITRON3	Helitron	RC	2481	medium	53	medium	283255	pericentromeric	19367	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	3919161	3922206	AT2TE16710	.	+	ATHILA	Gypsy	LTR	3045	medium	198	medium	285738	pericentromeric	16320	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	3920864,3920864,3921686,3921671,3925716,3921686	3920673,3920729,3921334,3921472,3921475,3921540	-,-,-,-,-,-	transcript_id-"5d4b9b2c-b90d-4b99-a087-e2709f022de2|6",transcript_id-"c41c83bb-d3b7-48ff-b454-a2e59dd67a28|6",transcript_id-"63e590c3-1b9b-494d-b7a3-78cae040dea5|24",transcript_id-"996af707-544d-4653-84c8-5752a5f4d5dc|121",transcript_id-"355d506c-0ea1-4e54-970b-4cee4b7f6eed|3",transcript_id-"d81f2a40-c215-48ef-8581-b4e108997fef|13"
Chr2	3922206	3922448	AT2TE16715	.	+	ATHILA	Gypsy	LTR	242	short	198	medium	288783	pericentromeric	16078	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	3922448	3922474	AT2TE16720	.	+	ATHILA	Gypsy	LTR	26	tiny	198	medium	289025	pericentromeric	16052	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	3922474	3925831	AT2TE16725	.	+	ATLINE1_6	L1	LINE	3357	medium	129	medium	289051	pericentromeric	12695	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	3925716	3921475	-	transcript_id-"355d506c-0ea1-4e54-970b-4cee4b7f6eed|3"
Chr2	3925214	3925309	AT2TE16730	.	+	ATLINE1_6	L1	LINE	95	tiny	129	medium	291791	pericentromeric	13217	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	3928136	3928727	AT2TE16740	.	+	ATIS112A	Harbinger	DNA	591	short	173	medium	294713	pericentromeric	9799	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3929912	3930523	AT2TE16745	.	+	ATREP9	Helitron	RC	611	short	201	high	296489	pericentromeric	8003	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	3932093	3932462	AT2TE16750	.	-	HELITRON1	Helitron	RC	369	short	130	medium	298670	pericentromeric	6064	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	3933267	3933380	AT2TE16755	.	-	ATREP4	Helitron	RC	113	short	832	high	299844	pericentromeric	5146	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	3934295	3934858	AT2TE16760	.	-	ATHAT7	HAT	DNA	563	short	20	low	300872	pericentromeric	3668	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	3934904	3935164	AT2TE16765	.	+	ATHATN10	HAT	DNA	260	short	48	low	301481	pericentromeric	3362	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	3935164	3935185	AT2TE16770	.	+	ATHAT10	HAT	DNA	21	tiny	35	low	301741	pericentromeric	3341	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	3935586	3936567	AT2TE16775	.	+	ATHAT10	HAT	DNA	981	short	35	low	302163	pericentromeric	1959	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	3938407	3938890	AT2TE16780	.	-	VANDAL3	MuDR	DNA	483	short	177	medium	304984	pericentromeric	0	no-RdDM	no-CHH	.	.	.	.	.
Chr2	3941004	3941163	AT2TE16790	.	-	VANDAL3	MuDR	DNA	159	short	177	medium	307581	pericentromeric	0	no-RdDM	no-CHH	.	.	.	.	.
Chr2	3941811	3942745	AT2TE16795	.	-	VANDAL3	MuDR	DNA	934	short	177	medium	308388	pericentromeric	571	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3942750	3962834	AT2TE16800	.	-	ATLANTYS3	Gypsy	LTR	20084	long	142	medium	309327	pericentromeric	1510	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	3944665	3945905	AT2TE16805	.	+	ATHILA4	Gypsy	LTR	1240	short	250	high	311242	pericentromeric	3425	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	3944818	3945158	+	transcript_id-"cfa5acd4-d318-4583-9504-258be83ff6be|15"
Chr2	3945905	3946037	AT2TE16810	.	+	ATHILA4B_LTR	Gypsy	LTR	132	short	143	medium	312482	pericentromeric	4665	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	3946037	3948281	AT2TE16815	.	+	ATHILA4	Gypsy	LTR	2244	medium	250	high	312614	pericentromeric	4797	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	3948281	3949277	AT2TE16820	.	+	ATHILA	Gypsy	LTR	996	short	198	medium	314858	pericentromeric	7041	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr2	3949277	3956452	AT2TE16825	.	+	ATHILA	Gypsy	LTR	7175	long	198	medium	315854	pericentromeric	8037	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	3953489,3953489,3953489	3954131,3954262,3955688	+,+,+	transcript_id-"efb67e5d-f138-4657-b055-8cdbbeb66eff|191",transcript_id-"07852ad5-4c9b-4eaf-b87c-04501b309a43|7",transcript_id-"da2227f9-6f26-46d3-8ec8-6d70781da5a1|9"
Chr2	3956455	3956852	AT2TE16830	.	+	ATHILA4	Gypsy	LTR	397	short	250	high	323032	pericentromeric	15215	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	3956852	3959397	AT2TE16835	.	+	ATHILA4A	Gypsy	LTR	2545	medium	310	high	323429	pericentromeric	15612	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	3962834	3963502	AT2TE16845	.	+	ATHILA4B_LTR	Gypsy	LTR	668	short	143	medium	329411	pericentromeric	20528	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3963519	3965120	AT2TE16850	.	-	ATHILA5	Gypsy	LTR	1601	short	131	medium	330096	pericentromeric	18910	no-RdDM	no-RdDM	ExpressedAndAnnotated	3968191	3964537	-	transcript_id-"5bc66764-b78d-4bfc-92e9-59c04b9f1ff3|3"
Chr2	3965120	3965156	AT2TE16855	.	-	ATHILA5	Gypsy	LTR	36	tiny	131	medium	331697	pericentromeric	18874	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	3965156	3966273	AT2TE16860	.	-	ATHILA2	Gypsy	LTR	1117	short	413	high	331733	pericentromeric	17757	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	3966273	3973249	AT2TE16865	.	-	ATHILA2	Gypsy	LTR	6976	long	413	high	332850	pericentromeric	10781	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	3968191	3964537	-	transcript_id-"5bc66764-b78d-4bfc-92e9-59c04b9f1ff3|3"
Chr2	3969875	3969964	AT2TE16870	.	-	ATHILA6A	Gypsy	LTR	89	tiny	247	high	336452	pericentromeric	14066	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	3972367	3972831	AT2TE16880	.	-	ATHILA2	Gypsy	LTR	464	short	413	high	338944	pericentromeric	11199	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	3973249	3975620	AT2TE16885	.	+	ATHILA4	Gypsy	LTR	2371	medium	250	high	339826	pericentromeric	8410	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3975743	3977958	AT2TE16890	.	+	ATHILA4A	Gypsy	LTR	2215	medium	310	high	342320	pericentromeric	6072	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	3977963	3980063	AT2TE16895	.	-	ATLANTYS3	Gypsy	LTR	2100	medium	142	medium	344540	pericentromeric	3967	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3980063	3980996	AT2TE16900	.	-	ATLANTYS3	Gypsy	LTR	933	short	142	medium	346640	pericentromeric	3034	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3980996	3981129	AT2TE16905	.	-	ATLANTYS1	Gypsy	LTR	133	short	153	medium	347573	pericentromeric	2901	no-RdDM	no-CHH	.	.	.	.	.
Chr2	3981129	3984836	AT2TE16910	.	-	ATLANTYS3	Gypsy	LTR	3707	medium	142	medium	347706	pericentromeric	0	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3982323	3983352	AT2TE16915	.	+	ATHILA4C	Gypsy	LTR	1029	short	206	high	348900	pericentromeric	678	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	3984907	3985066	AT2TE16920	.	-	VANDAL3	MuDR	DNA	159	short	177	medium	351484	pericentromeric	619	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	3985409	3985993	AT2TE16925	.	-	HELITRONY3	Helitron	RC	584	short	1399	high	351986	pericentromeric	1121	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	3986484	4005114	AT2TE16930	.	-	VANDAL4	MuDR	DNA	18630	long	102	medium	353061	pericentromeric	2196	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	4005187	4005618	AT2TE16935	.	+	ATN9_1	MuDR	DNA	431	short	65	medium	371764	pericentromeric	8133	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	4005635	4007377	AT2TE16940	.	+	ATHAT10	HAT	DNA	1742	short	35	low	372212	pericentromeric	6374	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	4005994	4007044	AT2TE16945	.	-	SADHU	.	Unassigned	1050	short	16	low	372571	pericentromeric	6707	PolIV-RdDM	no-CHH	ExpressedAndAnnotated	4006215	4006084	-	transcript_id-"73ca34b8-7271-4302-9120-aace0b5f3615|68"
Chr2	4007377	4007516	AT2TE16950	.	+	ATENSPM3	En-Spm	DNA	139	short	98	medium	373954	pericentromeric	6235	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4007516	4008741	AT2TE16955	.	+	ATENSPM3	En-Spm	DNA	1225	short	98	medium	374093	pericentromeric	5010	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	4008076	4008131	AT2TE16960	.	+	ATENSPM7	En-Spm	DNA	55	tiny	74	medium	374653	pericentromeric	5620	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	4018205	4019393	AT2TE17010	.	-	ATGP8	Gypsy	LTR	1188	short	92	medium	384782	pericentromeric	159	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	4018270	4018761	AT2TE17015	.	+	ATLANTYS3	Gypsy	LTR	491	short	142	medium	384847	pericentromeric	224	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	4020795	4020899	AT2TE17025	.	-	ATREP10D	Helitron	RC	104	short	1295	high	387372	pericentromeric	22	no-CHH	no-CHH	.	.	.	.	.
Chr2	4021091	4021263	AT2TE17030	.	-	HELITRONY1D	Helitron	RC	172	short	756	high	387668	pericentromeric	318	no-CHH	no-CHH	.	.	.	.	.
Chr2	4021277	4021314	AT2TE17035	.	-	ATREP5	Helitron	RC	37	tiny	624	high	387854	pericentromeric	504	no-CHH	no-CHH	.	.	.	.	.
Chr2	4021314	4022871	AT2TE17040	.	-	HELITRONY1B	Helitron	RC	1557	short	414	high	387891	pericentromeric	541	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4022871	4022898	AT2TE17045	.	-	HELITRONY1B	Helitron	RC	27	tiny	414	high	389448	pericentromeric	2098	no-CHH	no-CHH	.	.	.	.	.
Chr2	4022898	4022986	AT2TE17050	.	-	HELITRONY1D	Helitron	RC	88	tiny	756	high	389475	pericentromeric	2125	no-CHH	no-CHH	.	.	.	.	.
Chr2	4022986	4023317	AT2TE17055	.	+	ATREP3	Helitron	RC	331	short	1439	high	389563	pericentromeric	2213	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	4023317	4024951	AT2TE17060	.	-	ATREP3	Helitron	RC	1634	short	1439	high	389894	pericentromeric	2544	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4024951	4024990	AT2TE17065	.	+	ATREP3	Helitron	RC	39	tiny	1439	high	391528	pericentromeric	4178	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	4024990	4025414	AT2TE17070	.	+	ATREP3	Helitron	RC	424	short	1439	high	391567	pericentromeric	4217	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4025414	4025966	AT2TE17075	.	+	ATREP2	Helitron	RC	552	short	164	medium	391991	pericentromeric	4641	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	4025967	4026411	AT2TE17080	.	+	ATREP1	Helitron	RC	444	short	498	high	392544	pericentromeric	5194	no-RdDM	no-CHH	.	.	.	.	.
Chr2	4026729	4026906	AT2TE17085	.	-	HELITRONY1B	Helitron	RC	178	short	414	high	393305	pericentromeric	5955	.	.	.	.	.	.	.
Chr2	4026906	4027023	AT2TE17090	.	+	HELITRONY2	Helitron	RC	117	short	198	medium	393483	pericentromeric	6133	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	4027023	4045789	AT2TE17095	.	+	HELITRONY2	Helitron	RC	18766	long	198	medium	393600	pericentromeric	6250	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	4036231,4039497,4040766	4037473,4040198,4043708	+,+,+	transcript_id-"55785b15-d327-4cdd-b109-b3b55b1ff326|8",transcript_id-"61573b86-f9b7-4356-b33e-fe05ced75c34|6",transcript_id-"a1a1120b-a243-47df-8d51-4f2e70dfe817|10"
Chr2	4031897	4031955	AT2TE17100	.	+	HELITRON1	Helitron	RC	58	tiny	130	medium	398474	pericentromeric	11124	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	4035771	4044425	AT2TE17110	.	+	ATENSPM6	En-Spm	DNA	8654	long	151	medium	402348	pericentromeric	14998	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	4036231,4039497,4040766	4037473,4040198,4043708	+,+,+	transcript_id-"55785b15-d327-4cdd-b109-b3b55b1ff326|8",transcript_id-"61573b86-f9b7-4356-b33e-fe05ced75c34|6",transcript_id-"a1a1120b-a243-47df-8d51-4f2e70dfe817|10"
Chr2	4045795	4047602	AT2TE17115	.	-	ATHILA6A	Gypsy	LTR	1807	short	247	high	412372	pericentromeric	25022	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	4047603	4048502	AT2TE17120	.	+	HELITRONY2	Helitron	RC	899	short	198	medium	414180	pericentromeric	26830	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4048502	4049687	AT2TE17125	.	-	HELITRONY1B	Helitron	RC	1185	short	414	high	415079	pericentromeric	27729	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4049687	4049747	AT2TE17130	.	-	HELITRONY1B	Helitron	RC	60	tiny	414	high	416264	pericentromeric	28914	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	4049747	4049812	AT2TE17135	.	+	ATREP4	Helitron	RC	65	tiny	832	high	416324	pericentromeric	28974	no-RdDM	no-CHH	.	.	.	.	.
Chr2	4049812	4050117	AT2TE17140	.	+	ATREP10D	Helitron	RC	305	short	1295	high	416389	pericentromeric	29039	no-CHH	no-CHH	.	.	.	.	.
Chr2	4050151	4059366	AT2TE17145	.	+	ATCOPIA42	Copia	LTR	9215	long	35	low	416728	pericentromeric	23484	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	4055976	4056000	AT2TE17150	.	-	ATHILA3	Gypsy	LTR	24	tiny	243	high	422553	pericentromeric	26850	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	4056000	4057620	AT2TE17155	.	-	ATHILA0_I	Gypsy	LTR	1620	short	138	medium	422577	pericentromeric	25230	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	4059366	4059391	AT2TE17160	.	+	ATCOPIA42	Copia	LTR	25	tiny	35	low	425943	pericentromeric	23459	no-CHH	no-CHH	.	.	.	.	.
Chr2	4061045	4065458	AT2TE17165	.	+	ATCOPIA66	Copia	LTR	4413	medium	20	low	427622	pericentromeric	17392	no-RdDM	no-CHH	ExpressedAndAnnotated	4065185,4065185	4065523,4065593	+,+	transcript_id-"5687831a-8e3e-49de-aa6a-4106b1d3460a|5",transcript_id-"457873a6-080a-4a25-ac17-8ef6aec3c530|5"
Chr2	4065715	4067227	AT2TE17170	.	-	ATCOPIA95	Copia	LTR	1512	short	72	medium	432292	pericentromeric	15623	no-RdDM	no-CHH	.	.	.	.	.
Chr2	4067713	4067908	AT2TE17175	.	-	ATCOPIA95	Copia	LTR	195	short	72	medium	434290	pericentromeric	14942	no-CHH	no-CHH	.	.	.	.	.
Chr2	4068335	4068713	AT2TE17180	.	+	ATTIRX1A	.	DNA	378	short	63	medium	434912	pericentromeric	14137	no-CHH	no-CHH	.	.	.	.	.
Chr2	4068713	4068756	AT2TE17185	.	+	ATTIRX1B	.	DNA	43	tiny	44	low	435290	pericentromeric	14094	no-CHH	no-CHH	.	.	.	.	.
Chr2	4069687	4069962	AT2TE17190	.	+	ATCOPIA11	Copia	LTR	275	short	26	low	436264	pericentromeric	12888	no-RdDM	no-CHH	.	.	.	.	.
Chr2	4070545	4071105	AT2TE17195	.	+	ATHILA8B	Gypsy	LTR	560	short	78	medium	437122	pericentromeric	11745	no-RdDM	no-RdDM	ExpressedAndAnnotated	4070715	4070957	+	transcript_id-"c24d253b-8bb2-4448-9d66-12560de6969a|10"
Chr2	4071105	4071160	AT2TE17200	.	+	ATHILA8A	Gypsy	LTR	55	tiny	97	medium	437682	pericentromeric	11690	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	4071510	4074675	AT2TE17205	.	-	ATHILA4A	Gypsy	LTR	3165	medium	310	high	438087	pericentromeric	8175	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	4074677	4074724	AT2TE17210	.	-	ATHILA4A	Gypsy	LTR	47	tiny	310	high	441254	pericentromeric	8126	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4075192	4075362	AT2TE17215	.	-	ATHAT1	HAT	DNA	170	short	105	medium	441769	pericentromeric	7488	no-CHH	no-CHH	.	.	.	.	.
Chr2	4075362	4075684	AT2TE17220	.	+	ATHILA8B	Gypsy	LTR	322	short	78	medium	441939	pericentromeric	7166	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr2	4075795	4075938	AT2TE17225	.	+	ATLANTYS1	Gypsy	LTR	143	short	153	medium	442372	pericentromeric	6912	no-CHH	no-CHH	.	.	.	.	.
Chr2	4077881	4079717	AT2TE17230	.	-	VANDAL18NA	MuDR	DNA	1836	short	24	low	444458	pericentromeric	3133	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	4078207	4078646	+	transcript_id-"d4fbd3df-4aee-404c-809f-257ee422769b|20"
Chr2	4079801	4080201	AT2TE17235	.	-	HELITRONY2	Helitron	RC	400	short	198	medium	446378	pericentromeric	2649	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	4080623	4080825	AT2TE17240	.	-	HELITRONY1E	Helitron	RC	202	short	447	high	447200	pericentromeric	2025	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4080825	4082563	AT2TE17245	.	-	ATREP3	Helitron	RC	1738	short	1439	high	447402	pericentromeric	287	no-CHH	no-CHH	.	.	.	.	.
Chr2	4082563	4082605	AT2TE17250	.	-	ATREP3	Helitron	RC	42	tiny	1439	high	449140	pericentromeric	245	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	4082605	4082777	AT2TE17255	.	+	ATDNA2T9C	MuDR	DNA	172	short	242	high	449182	pericentromeric	73	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	4082777	4082814	AT2TE17260	.	-	HELITRONY1B	Helitron	RC	37	tiny	414	high	449354	pericentromeric	36	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	4083863	4083932	AT2TE17265	.	-	ATREP3	Helitron	RC	69	tiny	1439	high	450440	pericentromeric	695	no-CHH	no-CHH	.	.	.	.	.
Chr2	4083932	4084297	AT2TE17270	.	-	ATREP10D	Helitron	RC	365	short	1295	high	450509	pericentromeric	764	no-CHH	no-CHH	.	.	.	.	.
Chr2	4084297	4086823	AT2TE17275	.	-	ATREP10B	Helitron	RC	2526	medium	491	high	450874	pericentromeric	1129	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4086823	4087456	AT2TE17280	.	-	ATREP10C	Helitron	RC	633	short	123	medium	453400	pericentromeric	3655	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	4087456	4087498	AT2TE17285	.	-	ATREP10B	Helitron	RC	42	tiny	491	high	454033	pericentromeric	4288	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4087501	4087603	AT2TE17290	.	-	ATREP8	Helitron	RC	102	short	75	medium	454078	pericentromeric	4333	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4089022	4089098	AT2TE17295	.	+	ATDNA2T9C	MuDR	DNA	76	tiny	242	high	455599	pericentromeric	5854	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4091289	4093895	AT2TE17305	.	-	ATGP3	Gypsy	LTR	2606	medium	60	medium	457866	pericentromeric	8121	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	4097075	4097098	AT2TE17315	.	+	ATREP5	Helitron	RC	23	tiny	624	high	463652	pericentromeric	9084	no-RdDM	no-CHH	.	.	.	.	.
Chr2	4097103	4099067	AT2TE17320	.	-	HELITRONY3	Helitron	RC	1964	short	1399	high	463680	pericentromeric	7115	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4099067	4099088	AT2TE17325	.	+	HELITRONY1D	Helitron	RC	21	tiny	756	high	465644	pericentromeric	7094	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	4099089	4100423	AT2TE17330	.	+	HELITRONY1D	Helitron	RC	1335	short	756	high	465665	pericentromeric	5759	.	.	.	.	.	.	.
Chr2	4101077	4102741	AT2TE17335	.	-	HELITRONY2	Helitron	RC	1664	short	198	medium	467654	pericentromeric	3441	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	4103492	4103594	AT2TE17340	.	-	ATDNAI27T9A	MuDR	DNA	102	short	116	medium	470069	pericentromeric	2588	no-CHH	no-CHH	.	.	.	.	.
Chr2	4103953	4105050	AT2TE17345	.	-	BRODYAGA1A	MuDR	DNA	1097	short	586	high	470530	pericentromeric	1132	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4105060	4105106	AT2TE17350	.	-	HELITRONY1D	Helitron	RC	46	tiny	756	high	471637	pericentromeric	1076	no-RdDM	no-CHH	.	.	.	.	.
Chr2	4105106	4105349	AT2TE17355	.	+	TAG3N1	HAT	DNA	243	short	97	medium	471683	pericentromeric	833	DCL3-RdDM	no-RdDM	.	.	.	.	.
Chr2	4110946	4115695	AT2TE17380	.	+	ATCOPIA34	Copia	LTR	4749	medium	16	low	477523	pericentromeric	248	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	4115999	4116032	AT2TE17385	.	+	ATCOPIA35	Copia	LTR	33	tiny	22	low	482576	pericentromeric	5301	no-RdDM	no-CHH	.	.	.	.	.
Chr2	4116032	4120742	AT2TE17390	.	+	ATCOPIA35	Copia	LTR	4710	medium	22	low	482609	pericentromeric	5334	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	4120757	4121314	AT2TE17395	.	-	ATREP8	Helitron	RC	557	short	75	medium	487334	pericentromeric	10059	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	4121359	4122247	AT2TE17400	.	-	ATHILA6A	Gypsy	LTR	888	short	247	high	487936	pericentromeric	10661	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	4122247	4126434	AT2TE17405	.	-	ATHILA2	Gypsy	LTR	4187	medium	413	high	488824	pericentromeric	8460	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	4125560	4125807	AT2TE17410	.	-	ATHILA2	Gypsy	LTR	247	short	413	high	492137	pericentromeric	9087	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	4126435	4126635	AT2TE17415	.	-	ATHILA2	Gypsy	LTR	200	short	413	high	493012	pericentromeric	8259	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	4126641	4129340	AT2TE17420	.	-	ATHILA	Gypsy	LTR	2699	medium	198	medium	493218	pericentromeric	5554	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr2	4130633	4132419	AT2TE17425	.	-	ATHILA2	Gypsy	LTR	1786	short	413	high	497210	pericentromeric	2475	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	4132446	4134061	AT2TE17430	.	-	ATHILA6A	Gypsy	LTR	1615	short	247	high	499023	pericentromeric	833	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr2	4134061	4134107	AT2TE17435	.	-	ATHILA6B	Gypsy	LTR	46	tiny	134	medium	500638	pericentromeric	787	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	4134107	4134696	AT2TE17440	.	+	ATGP1	Gypsy	LTR	589	short	144	medium	500684	pericentromeric	198	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4134696	4134730	AT2TE17445	.	-	ATHILA8B	Gypsy	LTR	34	tiny	78	medium	501273	pericentromeric	164	no-CHH	no-CHH	.	.	.	.	.
Chr2	4134730	4135422	AT2TE17450	.	-	ATHILA8B	Gypsy	LTR	692	short	78	medium	501307	pericentromeric	0	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	4135422	4137080	AT2TE17455	.	+	ATHILA0_I	Gypsy	LTR	1658	short	138	medium	501999	pericentromeric	0	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	4137080	4137117	AT2TE17460	.	+	ATHILA3	Gypsy	LTR	37	tiny	243	high	503657	pericentromeric	1192	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	4137117	4137174	AT2TE17465	.	+	ATHILA0_I	Gypsy	LTR	57	tiny	138	medium	503694	pericentromeric	1229	no-CHH	no-RdDM	.	.	.	.	.
Chr2	4137174	4137204	AT2TE17470	.	-	ATHILA8B	Gypsy	LTR	30	tiny	78	medium	503751	pericentromeric	1286	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	4137204	4137240	AT2TE17475	.	+	ATHILA4	Gypsy	LTR	36	tiny	250	high	503781	pericentromeric	1316	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	4137311	4137500	AT2TE17480	.	-	ATHILA4D_LTR	Gypsy	LTR	189	short	106	medium	503888	pericentromeric	1423	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	4137500	4139254	AT2TE17485	.	-	ATHILA4D_LTR	Gypsy	LTR	1754	short	106	medium	504077	pericentromeric	1612	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	4139712	4140977	AT2TE17490	.	+	ATLINE1A	L1	LINE	1265	short	289	high	506289	pericentromeric	3824	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4140982	4141442	AT2TE17495	.	+	HELITRONY1A	Helitron	RC	460	short	271	high	507559	pericentromeric	4362	no-CHH	no-CHH	.	.	.	.	.
Chr2	4141442	4141703	AT2TE17500	.	+	ATREP4	Helitron	RC	261	short	832	high	508019	pericentromeric	4101	no-CHH	no-CHH	.	.	.	.	.
Chr2	4142777	4143311	AT2TE17505	.	-	ATREP10A	Helitron	RC	534	short	279	high	509354	pericentromeric	2493	no-CHH	no-CHH	.	.	.	.	.
Chr2	4143439	4143644	AT2TE17510	.	-	RathE2_cons	.	RathE2_cons	205	short	74	medium	510016	pericentromeric	2160	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4144382	4144490	AT2TE17515	.	-	ATLINE1A	L1	LINE	108	short	289	high	510959	pericentromeric	1314	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	4144490	4145069	AT2TE17520	.	+	ATREP15	Helitron	RC	579	short	1003	high	511067	pericentromeric	735	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	4145332	4145695	AT2TE17525	.	-	TSCL	.	LINE?	363	short	81	medium	511909	pericentromeric	109	PolIV-and-RDR6-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	4146335	4146664	AT2TE17530	.	-	ATREP15	Helitron	RC	329	short	1003	high	512912	pericentromeric	167	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	4146664	4148108	AT2TE17535	.	+	ATREP5	Helitron	RC	1444	short	624	high	513241	pericentromeric	496	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	4148108	4148554	AT2TE17540	.	+	HELITRONY1D	Helitron	RC	446	short	756	high	514685	pericentromeric	1940	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	4148554	4148669	AT2TE17545	.	+	HELITRONY1C	Helitron	RC	115	short	120	medium	515131	pericentromeric	2386	RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	4148679	4149237	AT2TE17550	.	+	ATLANTYS1	Gypsy	LTR	558	short	153	medium	515256	pericentromeric	2511	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	4149285	4149370	AT2TE17555	.	-	ATHILA3	Gypsy	LTR	85	tiny	243	high	515862	pericentromeric	3117	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	4149370	4149395	AT2TE17560	.	-	ATHILA8B	Gypsy	LTR	25	tiny	78	medium	515947	pericentromeric	3202	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	4149395	4153427	AT2TE17565	.	-	ATHILA8B	Gypsy	LTR	4032	medium	78	medium	515972	pericentromeric	3227	no-RdDM	no-RdDM	ExpressedAndAnnotated	4150425,4150428,4150428,4150424,4150422	4148440,4148614,4148759,4150040,4150283	-,-,-,-,-	transcript_id-"9805d3db-ea5f-47f4-9ba8-026be529cb36|7",transcript_id-"ecfc7660-2003-4c0e-803a-360bde8d09b0|43",transcript_id-"2661dc5e-86d3-43c3-8716-968c90af6a91|9",transcript_id-"7c64a4c1-eb81-4ca8-b864-6b5722fadde1|3",transcript_id-"bd28471b-261d-4ccb-96f0-c3791c1b3991|31"
Chr2	4153427	4155437	AT2TE17570	.	+	ATHILA2	Gypsy	LTR	2010	medium	413	high	520004	pericentromeric	7259	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	4155437	4155489	AT2TE17575	.	+	ATHILA6B	Gypsy	LTR	52	tiny	134	medium	522014	pericentromeric	9269	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	4155665	4157504	AT2TE17580	.	+	ATGP10	Gypsy	LTR	1839	short	165	medium	522242	pericentromeric	9497	no-RdDM	no-RdDM	ExpressedAndAnnotated	4157655	4157256	-	transcript_id-"1dc5b246-8035-4f4d-ab04-b920b4becca6|4"
Chr2	4157507	4159309	AT2TE17585	.	+	ATHILA0_I	Gypsy	LTR	1802	short	138	medium	524084	pericentromeric	11339	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	4159309	4161049	AT2TE17590	.	-	ATHILA8B	Gypsy	LTR	1740	short	78	medium	525886	pericentromeric	13141	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	4159483,4160530	4159235,4160149	-,-	transcript_id-"1a44b552-44f7-4c16-bf06-948125a5e913|13",transcript_id-"3df0d82b-c66f-49a9-8405-adce5c933e71|17"
Chr2	4161050	4162304	AT2TE17595	.	-	ATHILA4B_LTR	Gypsy	LTR	1254	short	143	medium	527627	pericentromeric	14882	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	4162310	4169555	AT2TE17600	.	+	ATENSPM6	En-Spm	DNA	7245	long	151	medium	528887	pericentromeric	16142	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	4165885	4168837	+	transcript_id-"61f8a00b-120d-4e4d-a1d9-0c91daa0a96d|6"
Chr2	4169555	4170633	AT2TE17605	.	-	ATHILA4A	Gypsy	LTR	1078	short	310	high	536132	pericentromeric	23387	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4170811	4173975	AT2TE17610	.	-	ATHILA4	Gypsy	LTR	3164	medium	250	high	537388	pericentromeric	24643	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	4173975	4174051	AT2TE17615	.	-	ATHILA4	Gypsy	LTR	76	tiny	250	high	540552	pericentromeric	27807	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	4174051	4175324	AT2TE17620	.	-	ATHILA0_I	Gypsy	LTR	1273	short	138	medium	540628	pericentromeric	27883	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	4175504	4183067	AT2TE17625	.	+	ATHILA6A	Gypsy	LTR	7563	long	247	high	542081	pericentromeric	29336	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	4180485	4182922	+	transcript_id-"1436b50a-303c-4359-8a26-886a8c5c3746|6"
Chr2	4183083	4183150	AT2TE17630	.	-	ATHILA6B	Gypsy	LTR	67	tiny	134	medium	549660	pericentromeric	36915	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	4183150	4183673	AT2TE17635	.	-	ATHILA4A	Gypsy	LTR	523	short	310	high	549727	pericentromeric	36982	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	4183673	4184976	AT2TE17640	.	+	ATHILA6A	Gypsy	LTR	1303	short	247	high	550250	pericentromeric	37505	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	4184119	4184230	+	transcript_id-"0621f0ae-22c2-4535-aa54-5e3486eb21e0|3"
Chr2	4184976	4185220	AT2TE17645	.	+	ATHILA	Gypsy	LTR	244	short	198	medium	551553	pericentromeric	38808	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	4185504	4185811	AT2TE17650	.	+	ATHILA	Gypsy	LTR	307	short	198	medium	552081	pericentromeric	39336	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	4186049	4188832	AT2TE17655	.	-	ATHILA	Gypsy	LTR	2783	medium	198	medium	552626	pericentromeric	39881	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	4186080	4188815	AT2TE17660	.	-	ATHILA	Gypsy	LTR	2735	medium	198	medium	552657	pericentromeric	39912	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	4188832	4189612	AT2TE17665	.	-	ATHILA	Gypsy	LTR	780	short	198	medium	555409	pericentromeric	42664	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	4189698	4189730	AT2TE17670	.	-	ATHILA2	Gypsy	LTR	32	tiny	413	high	556275	pericentromeric	43530	no-RdDM	no-CHH	.	.	.	.	.
Chr2	4189730	4190374	AT2TE17675	.	-	ATHILA	Gypsy	LTR	644	short	198	medium	556307	pericentromeric	43562	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	4190374	4190516	AT2TE17680	.	-	ATHILA0_I	Gypsy	LTR	142	short	138	medium	556951	pericentromeric	44206	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4190516	4190607	AT2TE17685	.	-	ATHILA	Gypsy	LTR	91	tiny	198	medium	557093	pericentromeric	44348	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	4190608	4190637	AT2TE17690	.	-	ATHILA5	Gypsy	LTR	30	tiny	131	medium	557184	pericentromeric	44439	.	.	.	.	.	.	.
Chr2	4190637	4194323	AT2TE17695	.	-	ATHILA	Gypsy	LTR	3686	medium	198	medium	557214	pericentromeric	44469	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	4194323	4194442	AT2TE17700	.	-	ATHILA	Gypsy	LTR	119	short	198	medium	560900	pericentromeric	48155	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	4194442	4194762	AT2TE17705	.	-	ATHILA	Gypsy	LTR	320	short	198	medium	561019	pericentromeric	48274	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	4194768	4195205	AT2TE17710	.	+	ATHILA6A	Gypsy	LTR	437	short	247	high	561345	pericentromeric	48600	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	4195872	4196795	AT2TE17715	.	-	ATHILA4	Gypsy	LTR	923	short	250	high	562449	pericentromeric	49704	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	4196795	4197159	AT2TE17720	.	+	ATDNA2T9C	MuDR	DNA	364	short	242	high	563372	pericentromeric	50627	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	4197159	4211222	AT2TE17725	.	-	ATHILA0_I	Gypsy	LTR	14063	long	138	medium	563736	pericentromeric	50991	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	4211042	4210466	-	transcript_id-"f858b37b-2e66-4c4e-8078-d9c33438b208|3"
Chr2	4203242	4205065	AT2TE17730	.	+	ATHILA6A	Gypsy	LTR	1823	short	247	high	569819	pericentromeric	57074	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	4203990	4204105	+	transcript_id-"e7c11860-8028-4ef3-9d60-923fb520de30|3"
Chr2	4211222	4211250	AT2TE17760	.	-	ATHILA3	Gypsy	LTR	28	tiny	243	high	577799	pericentromeric	65054	PolIV-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	4211250	4211833	AT2TE17765	.	+	ATREP5	Helitron	RC	583	short	624	high	577827	pericentromeric	65082	no-CHH	no-CHH	.	.	.	.	.
Chr2	4212690	4214460	AT2TE17770	.	+	VANDAL3	MuDR	DNA	1770	short	177	medium	579267	pericentromeric	66522	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	4214635	4215061	AT2TE17775	.	+	VANDAL3	MuDR	DNA	426	short	177	medium	581212	pericentromeric	68467	PolIV-and-RDR6-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	4215061	4215977	AT2TE17780	.	+	ATREP10D	Helitron	RC	916	short	1295	high	581638	pericentromeric	68893	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4215977	4216583	AT2TE17785	.	-	HELITRONY3	Helitron	RC	606	short	1399	high	582554	pericentromeric	69809	no-CHH	no-CHH	.	.	.	.	.
Chr2	4216583	4217012	AT2TE17790	.	-	VANDAL3	MuDR	DNA	429	short	177	medium	583160	pericentromeric	70415	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4217156	4218952	AT2TE17795	.	-	ATHILA2	Gypsy	LTR	1796	short	413	high	583733	pericentromeric	70988	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	4218952	4219022	AT2TE17800	.	-	VANDAL3	MuDR	DNA	70	tiny	177	medium	585529	pericentromeric	72784	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	4219022	4220768	AT2TE17805	.	-	VANDAL3	MuDR	DNA	1746	short	177	medium	585599	pericentromeric	72854	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4221438	4222040	AT2TE17810	.	+	ATLANTYS2	Gypsy	LTR	602	short	179	medium	588015	pericentromeric	75270	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr2	4222040	4222113	AT2TE17815	.	+	ATLANTYS3	Gypsy	LTR	73	tiny	142	medium	588617	pericentromeric	75872	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	4223568	4223608	AT2TE17820	.	+	ATGP9LTR	Gypsy	LTR	40	tiny	10	low	590145	pericentromeric	77400	no-CHH	no-CHH	.	.	.	.	.
Chr2	4223804	4223847	AT2TE17825	.	-	ATGP9LTR	Gypsy	LTR	43	tiny	10	low	590381	pericentromeric	77636	no-CHH	no-CHH	.	.	.	.	.
Chr2	4224097	4224173	AT2TE17830	.	-	VANDAL6	MuDR	DNA	76	tiny	89	medium	590674	pericentromeric	77709	no-CHH	no-CHH	.	.	.	.	.
Chr2	4224173	4224643	AT2TE17835	.	-	VANDAL6	MuDR	DNA	470	short	89	medium	590750	pericentromeric	77239	no-CHH	no-CHH	.	.	.	.	.
Chr2	4224643	4224685	AT2TE17840	.	+	ATLANTYS3	Gypsy	LTR	42	tiny	142	medium	591220	pericentromeric	77197	no-CHH	no-CHH	.	.	.	.	.
Chr2	4225742	4227440	AT2TE17845	.	+	ATLANTYS2	Gypsy	LTR	1698	short	179	medium	592319	pericentromeric	74442	no-RdDM	no-CHH	.	.	.	.	.
Chr2	4226300	4226629	AT2TE17850	.	-	VANDAL6	MuDR	DNA	329	short	89	medium	592877	pericentromeric	75253	no-CHH	no-CHH	.	.	.	.	.
Chr2	4227441	4227483	AT2TE17855	.	+	ATLANTYS2	Gypsy	LTR	43	tiny	179	medium	594017	pericentromeric	74399	.	.	.	.	.	.	.
Chr2	4227484	4227556	AT2TE17860	.	+	ATLANTYS3	Gypsy	LTR	73	tiny	142	medium	594060	pericentromeric	74326	.	.	.	.	.	.	.
Chr2	4230742	4236512	AT2TE17870	.	+	ATCOPIA32B	Copia	LTR	5770	long	10	low	597319	pericentromeric	65370	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	4236656	4244403	AT2TE17875	.	+	ATGP2	Gypsy	LTR	7747	long	48	low	603233	pericentromeric	57479	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	4246238	4249248	AT2TE17880	.	-	ATCOPIA95	Copia	LTR	3010	medium	72	medium	612815	pericentromeric	52634	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	4247682	4247789	AT2TE17885	.	+	ATREP16	MuDR	DNA	107	short	47	low	614259	pericentromeric	54093	DCL3-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	4247790	4247961	AT2TE17890	.	-	ATREP16	MuDR	DNA	171	short	47	low	614367	pericentromeric	53921	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	4248148	4248172	AT2TE17895	.	-	ATCOPIA65	Copia	LTR	24	tiny	34	low	614725	pericentromeric	53710	no-RdDM	no-CHH	.	.	.	.	.
Chr2	4249248	4249404	AT2TE17900	.	+	ATHILA3	Gypsy	LTR	156	short	243	high	615825	pericentromeric	52478	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr2	4249408	4250359	AT2TE17905	.	-	ATHILA4A	Gypsy	LTR	951	short	310	high	615985	pericentromeric	51523	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4250386	4250546	AT2TE17910	.	-	ATHILA4	Gypsy	LTR	160	short	250	high	616963	pericentromeric	51336	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	4251550	4251740	AT2TE17915	.	+	ATCOPIA43	Copia	LTR	190	short	29	low	618127	pericentromeric	50142	no-RdDM	no-CHH	.	.	.	.	.
Chr2	4252038	4252659	AT2TE17920	.	+	ATCOPIA95	Copia	LTR	621	short	72	medium	618615	pericentromeric	49223	no-RdDM	no-CHH	.	.	.	.	.
Chr2	4252664	4255848	AT2TE17925	.	-	ATHILA4	Gypsy	LTR	3184	medium	250	high	619241	pericentromeric	46034	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	4255848	4255883	AT2TE17930	.	-	ATHILA4	Gypsy	LTR	35	tiny	250	high	622425	pericentromeric	45999	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	4256383	4261370	AT2TE17935	.	+	ATLINE1_6	L1	LINE	4987	medium	129	medium	622960	pericentromeric	40512	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	4255887	4257395	+	transcript_id-"90750d34-a6ca-45e4-a425-da083ba5bec9|6"
Chr2	4256625	4258322	AT2TE17940	.	+	ATHILA2	Gypsy	LTR	1697	short	413	high	623202	pericentromeric	43560	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	4261850	4261870	AT2TE17950	.	+	HELITRONY1A	Helitron	RC	20	tiny	271	high	628427	pericentromeric	40012	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr2	4261870	4262019	AT2TE17955	.	+	ATREP11	Helitron	RC	149	short	841	high	628447	pericentromeric	39863	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	4262019	4265049	AT2TE17960	.	-	ATREP15	Helitron	RC	3030	medium	1003	high	628596	pericentromeric	36833	no-CHH	no-CHH	.	.	.	.	.
Chr2	4262389	4262675	AT2TE17965	.	+	ATREP3	Helitron	RC	286	short	1439	high	628966	pericentromeric	39207	no-CHH	no-CHH	.	.	.	.	.
Chr2	4263518	4263665	AT2TE17970	.	+	ATREP15	Helitron	RC	147	short	1003	high	630095	pericentromeric	38217	no-CHH	RDR6-RdDM	.	.	.	.	.
Chr2	4265049	4274213	AT2TE17975	.	+	HELITRONY2	Helitron	RC	9164	long	198	medium	631626	pericentromeric	27669	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	4274213	4275401	AT2TE17980	.	+	HELITRONY1E	Helitron	RC	1188	short	447	high	640790	pericentromeric	26481	no-CHH	no-CHH	.	.	.	.	.
Chr2	4275616	4282081	AT2TE17985	.	-	ATCOPIA41	Copia	LTR	6465	long	39	low	642193	pericentromeric	19801	no-RdDM	no-RdDM	ExpressedAndAnnotated	4276865,4276788,4277548	4276322,4276323,4276331	-,-,-	transcript_id-"cdaa5d7a-d1cb-41c9-b975-a7e83aa37ac9|3",transcript_id-"a30c2be2-38bb-4029-883c-4aa3cbad4c7e|12",transcript_id-"9c39e3a3-ba99-41db-bc39-0c41a154eaba|19"
Chr2	4282081	4282110	AT2TE17990	.	-	ATCOPIA41	Copia	LTR	29	tiny	39	low	648658	pericentromeric	19772	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	4283144	4283215	AT2TE17995	.	+	ATMU6	MuDR	DNA	71	tiny	26	low	649721	pericentromeric	18667	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	4283215	4283925	AT2TE18000	.	+	ATMU6	MuDR	DNA	710	short	26	low	649792	pericentromeric	17957	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	4283925	4287689	AT2TE18005	.	-	ATHILA	Gypsy	LTR	3764	medium	198	medium	650502	pericentromeric	14193	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	4287689	4288452	AT2TE18010	.	-	ATHILA6B	Gypsy	LTR	763	short	134	medium	654266	pericentromeric	13430	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	4288452	4292852	AT2TE18015	.	-	ATHILA2	Gypsy	LTR	4400	medium	413	high	655029	pericentromeric	9030	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	4292852	4292958	AT2TE18020	.	-	ROMANIAT5	Copia	LTR	106	short	49	low	659429	pericentromeric	8924	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	4294012	4294325	AT2TE18025	.	+	ATLINE1_6	L1	LINE	313	short	129	medium	660589	pericentromeric	7557	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	4296222	4296358	AT2TE18030	.	+	ATLINE1_4	L1	LINE	136	short	102	medium	662799	pericentromeric	5524	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	4296358	4300305	AT2TE18035	.	+	ATLINE1A	L1	LINE	3947	medium	289	high	662935	pericentromeric	1577	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4301301	4301567	AT2TE18040	.	-	TNAT1A	.	DNA	266	short	162	medium	667878	pericentromeric	315	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	4301567	4301882	AT2TE18045	.	-	ATDNAI27T9A	MuDR	DNA	315	short	116	medium	668144	pericentromeric	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	4301943	4302118	AT2TE18050	.	+	VANDAL1	MuDR	DNA	175	short	80	medium	668520	pericentromeric	0	DCL3-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	4302304	4303175	AT2TE18055	.	-	LIMPET1	MuDR	DNA	871	short	116	medium	668881	pericentromeric	142	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	4303175	4303211	AT2TE18060	.	-	LIMPET1	MuDR	DNA	36	tiny	116	medium	669752	pericentromeric	106	no-CHH	no-RdDM	LowExpressed	.	.	.	.
Chr2	4304124	4304153	AT2TE18065	.	-	ARNOLDY1	MuDR	DNA	29	tiny	237	high	670701	pericentromeric	206	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	4304153	4304292	AT2TE18070	.	-	TNAT1A	.	DNA	139	short	162	medium	670730	pericentromeric	235	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	4304292	4304847	AT2TE18075	.	-	TNAT1A	.	DNA	555	short	162	medium	670869	pericentromeric	374	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	4305858	4306353	AT2TE18080	.	+	ATREP2	Helitron	RC	495	short	164	medium	672435	pericentromeric	166	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	4306353	4306386	AT2TE18085	.	+	ATREP1	Helitron	RC	33	tiny	498	high	672930	pericentromeric	661	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr2	4306386	4307780	AT2TE18090	.	-	HELITRONY3A	Helitron	RC	1394	short	49	low	672963	pericentromeric	694	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	4307780	4308069	AT2TE18095	.	+	ATREP11	Helitron	RC	289	short	841	high	674357	pericentromeric	2088	no-CHH	no-CHH	.	.	.	.	.
Chr2	4308877	4309521	AT2TE18100	.	+	TNAT1A	.	DNA	645	short	162	medium	675453	pericentromeric	1638	.	.	.	.	.	.	.
Chr2	4309521	4310332	AT2TE18105	.	-	TNAT1A	.	DNA	811	short	162	medium	676098	pericentromeric	827	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	4310332	4310520	AT2TE18110	.	-	ATREP3	Helitron	RC	188	short	1439	high	676909	pericentromeric	639	no-CHH	no-CHH	.	.	.	.	.
Chr2	4311735	4311909	AT2TE18115	.	+	ATGP2	Gypsy	LTR	174	short	48	low	678312	pericentromeric	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	4313073	4313218	AT2TE18120	.	+	ARNOLD4	MuDR	DNA	145	short	23	low	679650	pericentromeric	1038	no-CHH	no-CHH	.	.	.	.	.
Chr2	4313218	4313258	AT2TE18125	.	+	ATMUNX1	MuDR	DNA	40	tiny	155	medium	679795	pericentromeric	1183	no-CHH	no-CHH	.	.	.	.	.
Chr2	4313258	4313650	AT2TE18130	.	+	ATMUNX1	MuDR	DNA	392	short	155	medium	679835	pericentromeric	1223	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	4314703	4314779	AT2TE18135	.	-	BRODYAGA2	MuDR	DNA	76	tiny	525	high	681280	pericentromeric	754	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	4314779	4315149	AT2TE18140	.	-	ATHATN4	HAT	DNA	370	short	56	medium	681356	pericentromeric	384	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	4317930	4318005	AT2TE18150	.	+	ATMU6	MuDR	DNA	75	tiny	26	low	684507	pericentromeric	130	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	4318005	4322177	AT2TE18155	.	-	ATMU6	MuDR	DNA	4172	medium	26	low	684582	pericentromeric	205	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	4322182	4322672	AT2TE18160	.	-	BOMZH2	MuDR	DNA	490	short	47	low	688759	pericentromeric	998	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr2	4322731	4323163	AT2TE18165	.	+	BRODYAGA1	MuDR	DNA	432	short	251	high	689308	pericentromeric	507	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	4325526	4325690	AT2TE18175	.	+	ATIS112A	Harbinger	DNA	164	short	173	medium	692103	pericentromeric	578	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4326003	4326583	AT2TE18180	.	+	ATREP15	Helitron	RC	580	short	1003	high	692580	pericentromeric	1055	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4326583	4327964	AT2TE18185	.	-	HELITRONY3	Helitron	RC	1381	short	1399	high	693160	pericentromeric	1635	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4327964	4328009	AT2TE18190	.	+	BRODYAGA2	MuDR	DNA	45	tiny	525	high	694541	pericentromeric	3016	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	4328617	4328777	AT2TE18195	.	-	VANDAL11	MuDR	DNA	160	short	18	low	695194	pericentromeric	3669	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	4329265	4329921	AT2TE18200	.	-	ATMU9	MuDR	DNA	656	short	16	low	695842	pericentromeric	3026	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	4329921	4330007	AT2TE18205	.	-	ATMU7	MuDR	DNA	86	tiny	32	low	696498	pericentromeric	2940	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	4330288	4330459	AT2TE18210	.	-	VANDAL10	MuDR	DNA	171	short	13	low	696865	pericentromeric	2488	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	4330974	4331089	AT2TE18215	.	+	TNAT2A	.	DNA	115	short	38	low	697551	pericentromeric	1858	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4336397	4337750	AT2TE18240	.	+	ATIS112A	Harbinger	DNA	1353	short	173	medium	702974	pericentromeric	488	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	4338179	4339187	AT2TE18245	.	+	ATMUN2	MuDR	DNA	1008	short	6	low	704756	pericentromeric	2140	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4340478	4340591	AT2TE18250	.	-	ATREP9	Helitron	RC	113	short	201	high	707055	pericentromeric	736	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4340591	4341175	AT2TE18255	.	+	TNAT1A	.	DNA	584	short	162	medium	707168	pericentromeric	152	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4347960	4348352	AT2TE18280	.	+	ATMUN1	MuDR	DNA	392	short	107	medium	714537	pericentromeric	158	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	4349966	4350094	AT2TE18285	.	+	VANDAL16	MuDR	DNA	128	short	42	low	716543	pericentromeric	389	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4350094	4350353	AT2TE18290	.	+	ATREP10	Helitron	RC	259	short	63	medium	716671	pericentromeric	517	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4350353	4350506	AT2TE18295	.	+	HELITRONY3	Helitron	RC	153	short	1399	high	716930	pericentromeric	776	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	4350506	4351511	AT2TE18300	.	+	ARNOLDY2	MuDR	DNA	1005	short	288	high	717083	pericentromeric	929	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4351511	4353557	AT2TE18305	.	-	ATREP11A	Helitron	RC	2046	medium	95	medium	718088	pericentromeric	1934	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4353557	4353598	AT2TE18310	.	-	ARNOLDY1	MuDR	DNA	41	tiny	237	high	720134	pericentromeric	3980	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	4353598	4353787	AT2TE18315	.	-	ARNOLDY1	MuDR	DNA	189	short	237	high	720175	pericentromeric	4021	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	4353787	4357222	AT2TE18320	.	-	ARNOLDY2	MuDR	DNA	3435	medium	288	high	720364	pericentromeric	4210	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4357223	4357327	AT2TE18325	.	-	ARNOLDY2	MuDR	DNA	105	short	288	high	723799	pericentromeric	4541	.	.	.	.	.	.	.
Chr2	4357342	4358519	AT2TE18330	.	-	ATHILA	Gypsy	LTR	1177	short	198	medium	723919	pericentromeric	3349	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	4358541	4360141	AT2TE18335	.	-	ARNOLD1	MuDR	DNA	1600	short	39	low	725118	pericentromeric	1727	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	4359981	4359705	-	transcript_id-"0ce7b226-9797-42d4-8ebb-8733050b9840|3"
Chr2	4360141	4360162	AT2TE18340	.	-	ATREP10D	Helitron	RC	21	tiny	1295	high	726718	pericentromeric	1706	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	4360162	4361509	AT2TE18345	.	-	ATREP11	Helitron	RC	1347	short	841	high	726739	pericentromeric	359	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	4361509	4361549	AT2TE18350	.	+	HELITRON2	Helitron	RC	40	tiny	194	medium	728086	pericentromeric	319	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	4361881	4361933	AT2TE18355	.	+	ATHILA	Gypsy	LTR	52	tiny	198	medium	728458	pericentromeric	0	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	4366762	4366862	AT2TE18370	.	-	ATLANTYS3	Gypsy	LTR	100	short	142	medium	733339	pericentromeric	122	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	4366862	4370201	AT2TE18375	.	-	ATLANTYS1	Gypsy	LTR	3339	medium	153	medium	733439	pericentromeric	222	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	4370211	4371438	AT2TE18380	.	-	ATHILA4B_LTR	Gypsy	LTR	1227	short	143	medium	736788	pericentromeric	3571	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	4371540	4375322	AT2TE18385	.	+	ARNOLD1	MuDR	DNA	3782	medium	39	low	738117	pericentromeric	4900	no-RdDM	no-RdDM	ExpressedAndAnnotated	4372452	4371980	-	transcript_id-"71a3e7e0-498e-4154-b29f-cef9c61604c4|4"
Chr2	4375322	4375498	AT2TE18390	.	+	ARNOLD1	MuDR	DNA	176	short	39	low	741899	pericentromeric	8682	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	4375498	4379828	AT2TE18395	.	+	ARNOLD3	MuDR	DNA	4330	medium	45	low	742075	pericentromeric	8858	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	4379828	4381342	AT2TE18400	.	+	ATHILA3	Gypsy	LTR	1514	short	243	high	746405	pericentromeric	13188	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	4381342	4381395	AT2TE18405	.	+	ATHILA6A	Gypsy	LTR	53	tiny	247	high	747919	pericentromeric	14702	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	4381395	4397150	AT2TE18410	.	+	ATHILA3	Gypsy	LTR	15755	long	243	high	747972	pericentromeric	14755	no-RdDM	no-RdDM	ExpressedAndAnnotated	4395710	4396248	+	transcript_id-"114b19cd-f59f-429c-8ac5-89772d1744c3|4"
Chr2	4385855	4394311	AT2TE18415	.	-	ATENSPM3	En-Spm	DNA	8456	long	98	medium	752432	pericentromeric	19215	no-RdDM	no-RdDM	ExpressedAndAnnotated	4386558	4386216	-	transcript_id-"a00fa18f-647f-4b75-84c8-386898cf98c3|5"
Chr2	4397150	4397179	AT2TE18425	.	+	ATHILA3	Gypsy	LTR	29	tiny	243	high	763727	pericentromeric	30510	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	4397872	4398152	AT2TE18430	.	+	ATLINE1_6	L1	LINE	280	short	129	medium	764449	pericentromeric	31232	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	4398156	4401873	AT2TE18435	.	+	ATHILA4	Gypsy	LTR	3717	medium	250	high	764733	pericentromeric	31516	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	4398317	4400056	AT2TE18440	.	-	ATHILA2	Gypsy	LTR	1739	short	413	high	764894	pericentromeric	31677	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	4402022	4404336	AT2TE18445	.	+	ATHILA4A	Gypsy	LTR	2314	medium	310	high	768599	pericentromeric	35382	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	4404336	4407935	AT2TE18450	.	-	ATENSPM1A	En-Spm	DNA	3599	medium	77	medium	770913	pericentromeric	37696	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	4407004	4404613	-	transcript_id-"d4be292c-be3f-4aa0-91cf-11cba5304300|3"
Chr2	4407945	4412568	AT2TE18455	.	-	ATHILA0_I	Gypsy	LTR	4623	medium	138	medium	774522	pericentromeric	39355	no-RdDM	no-RdDM	ExpressedAndAnnotated	4408603,4409653	4408075,4409066	-,-	transcript_id-"7eb93f66-82dc-4e7c-a728-0f61dda461b7|3",transcript_id-"819beddb-b49d-48d6-a11f-26e2a3fad6b1|4"
Chr2	4412568	4413203	AT2TE18460	.	-	ATHILA0_I	Gypsy	LTR	635	short	138	medium	779145	pericentromeric	38720	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	4413204	4413639	AT2TE18465	.	-	ATHILA3	Gypsy	LTR	435	short	243	high	779781	pericentromeric	38284	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	4413639	4413667	AT2TE18470	.	-	ATHILA0_I	Gypsy	LTR	28	tiny	138	medium	780216	pericentromeric	38256	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr2	4413667	4413823	AT2TE18475	.	-	ATHILA4B_LTR	Gypsy	LTR	156	short	143	medium	780244	pericentromeric	38100	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	4413829	4414616	AT2TE18480	.	+	ATLINE2	L1	LINE	787	short	138	medium	780406	pericentromeric	37307	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	4414833	4415890	AT2TE18485	.	+	BRODYAGA1A	MuDR	DNA	1057	short	586	high	781410	pericentromeric	36033	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	4415890	4415911	AT2TE18490	.	-	BRODYAGA1	MuDR	DNA	21	tiny	251	high	782467	pericentromeric	36012	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	4415924	4419880	AT2TE18495	.	-	HELITRON1	Helitron	RC	3956	medium	130	medium	782501	pericentromeric	32043	no-CHH	no-CHH	ExpressedAndAnnotated	4416448,4416450,4416453,4418539	4415836,4416026,4416262,4416649	-,-,-,-	transcript_id-"28feb66c-4d9e-4492-8559-66af54bbabed|11",transcript_id-"c02640a2-4426-44f3-90c8-eb168f608e59|48",transcript_id-"bcf23bef-3422-4929-9581-3ba76cb68b24|19",transcript_id-"60521aac-01d2-45ae-be13-0db0bbcbaf62|12"
Chr2	4417169	4418648	AT2TE18500	.	-	ATCOPIA16	Copia	LTR	1479	short	12	low	783746	pericentromeric	33275	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	4419880	4422099	AT2TE18505	.	-	HELITRON5	Helitron	RC	2219	medium	56	medium	786457	pericentromeric	29824	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	4422099	4422169	AT2TE18510	.	-	HELITRON1	Helitron	RC	70	tiny	130	medium	788676	pericentromeric	29754	no-CHH	no-CHH	.	.	.	.	.
Chr2	4422529	4422598	AT2TE18515	.	-	HELITRONY1B	Helitron	RC	69	tiny	414	high	789106	pericentromeric	29325	no-CHH	no-CHH	.	.	.	.	.
Chr2	4422598	4422842	AT2TE18520	.	-	HELITRONY1B	Helitron	RC	244	short	414	high	789175	pericentromeric	29081	no-CHH	no-CHH	.	.	.	.	.
Chr2	4422842	4422870	AT2TE18525	.	+	ARNOLD1	MuDR	DNA	28	tiny	39	low	789419	pericentromeric	29053	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	4422870	4425447	AT2TE18530	.	+	ARNOLD2	MuDR	DNA	2577	medium	68	medium	789447	pericentromeric	26476	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	4423356	4423837	AT2TE18535	.	+	ARNOLD2	MuDR	DNA	481	short	68	medium	789933	pericentromeric	28086	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	4425447	4425636	AT2TE18540	.	+	ARNOLD3	MuDR	DNA	189	short	45	low	792024	pericentromeric	26287	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	4425636	4428291	AT2TE18545	.	+	ARNOLD2	MuDR	DNA	2655	medium	68	medium	792213	pericentromeric	23632	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	4428568,4428558	4427114,4427361	-,-	transcript_id-"3572ad58-70e8-4272-9568-51060e312ec2|3",transcript_id-"4b403f02-b4bf-4421-8971-0bc9452dd345|13"
Chr2	4427002	4427121	AT2TE18550	.	+	ARNOLD2	MuDR	DNA	119	short	68	medium	793579	pericentromeric	24802	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	4428291	4428333	AT2TE18555	.	+	ARNOLD1	MuDR	DNA	42	tiny	39	low	794868	pericentromeric	23590	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4428333	4428681	AT2TE18560	.	+	ARNOLD4	MuDR	DNA	348	short	23	low	794910	pericentromeric	23242	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	4428568,4428558	4427114,4427361	-,-	transcript_id-"3572ad58-70e8-4272-9568-51060e312ec2|3",transcript_id-"4b403f02-b4bf-4421-8971-0bc9452dd345|13"
Chr2	4428681	4428707	AT2TE18565	.	-	HELITRONY1A	Helitron	RC	26	tiny	271	high	795258	pericentromeric	23216	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	4428707	4429211	AT2TE18570	.	-	HELITRONY1A	Helitron	RC	504	short	271	high	795284	pericentromeric	22712	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4429211	4429258	AT2TE18575	.	-	BRODYAGA1	MuDR	DNA	47	tiny	251	high	795788	pericentromeric	22665	no-RdDM	no-CHH	.	.	.	.	.
Chr2	4429258	4430013	AT2TE18580	.	+	ATREP11	Helitron	RC	755	short	841	high	795835	pericentromeric	21910	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	4430013	4430630	AT2TE18585	.	+	VANDAL4	MuDR	DNA	617	short	102	medium	796590	pericentromeric	21293	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4430630	4430799	AT2TE18590	.	-	VANDAL4	MuDR	DNA	169	short	102	medium	797207	pericentromeric	21124	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	4430799	4430941	AT2TE18595	.	+	VANDAL5	MuDR	DNA	142	short	85	medium	797376	pericentromeric	20982	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	4430941	4430980	AT2TE18600	.	+	VANDAL5	MuDR	DNA	39	tiny	85	medium	797518	pericentromeric	20943	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	4430980	4434605	AT2TE18605	.	+	VANDAL5	MuDR	DNA	3625	medium	85	medium	797557	pericentromeric	17318	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	4432959	4433061	AT2TE18610	.	+	VANDAL5	MuDR	DNA	102	short	85	medium	799536	pericentromeric	18862	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	4434605	4434649	AT2TE18615	.	+	VANDAL5	MuDR	DNA	44	tiny	85	medium	801182	pericentromeric	17274	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4434653	4434901	AT2TE18620	.	+	VANDAL5	MuDR	DNA	248	short	85	medium	801230	pericentromeric	17022	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	4434901	4438078	AT2TE18625	.	+	VANDAL5	MuDR	DNA	3177	medium	85	medium	801478	pericentromeric	13845	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	4438078	4438132	AT2TE18630	.	-	SIMPLEHAT2	HAT	DNA	54	tiny	73	medium	804655	pericentromeric	13791	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	4438132	4438305	AT2TE18635	.	-	SIMPLEHAT2	HAT	DNA	173	short	73	medium	804709	pericentromeric	13618	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4438305	4439529	AT2TE18640	.	-	ATREP10D	Helitron	RC	1224	short	1295	high	804882	pericentromeric	12394	no-CHH	no-CHH	.	.	.	.	.
Chr2	4439529	4439615	AT2TE18645	.	-	HELITRONY1B	Helitron	RC	86	tiny	414	high	806106	pericentromeric	12308	no-CHH	no-RdDM	.	.	.	.	.
Chr2	4439615	4439707	AT2TE18650	.	-	ATREP10A	Helitron	RC	92	tiny	279	high	806192	pericentromeric	12216	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	4442042	4442068	AT2TE18660	.	+	ATCOPIA28	Copia	LTR	26	tiny	81	medium	808619	pericentromeric	9855	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4442068	4445835	AT2TE18665	.	+	ATCOPIA29	Copia	LTR	3767	medium	19	low	808645	pericentromeric	6088	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	4446474	4448977	AT2TE18670	.	-	ATCOPIA45	Copia	LTR	2503	medium	20	low	813051	pericentromeric	2946	no-CHH	no-CHH	.	.	.	.	.
Chr2	4448977	4449035	AT2TE18675	.	-	ATCOPIA45	Copia	LTR	58	tiny	20	low	815554	pericentromeric	2888	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4449035	4449656	AT2TE18680	.	+	HELITRONY3	Helitron	RC	621	short	1399	high	815612	pericentromeric	2267	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4449656	4451537	AT2TE18685	.	+	ATREP6	Helitron	RC	1881	short	181	medium	816233	pericentromeric	386	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4451556	4451779	AT2TE18690	.	+	ATREP10D	Helitron	RC	223	short	1295	high	818133	pericentromeric	144	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4452529	4457022	AT2TE18695	.	+	VANDAL20	MuDR	DNA	4493	medium	51	medium	819106	pericentromeric	141	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	4458399	4459814	AT2TE18700	.	+	ATREP15	Helitron	RC	1415	short	1003	high	824976	pericentromeric	6011	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4460071	4460098	AT2TE18705	.	+	ATCOPIA65	Copia	LTR	27	tiny	34	low	826648	pericentromeric	7683	no-RdDM	no-CHH	.	.	.	.	.
Chr2	4460098	4470368	AT2TE18710	.	+	ATCOPIA35	Copia	LTR	10270	long	22	low	826675	pericentromeric	7710	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	4461785	4465949	AT2TE18715	.	+	ATHILA4	Gypsy	LTR	4164	medium	250	high	828362	pericentromeric	9397	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	4465949	4468547	AT2TE18720	.	+	ATHILA4A	Gypsy	LTR	2598	medium	310	high	832526	pericentromeric	13561	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	4470379	4470931	AT2TE18725	.	+	ATCOPIA65	Copia	LTR	552	short	34	low	836956	pericentromeric	13788	no-RdDM	no-CHH	.	.	.	.	.
Chr2	4471579	4471730	AT2TE18730	.	+	HELITRONY2	Helitron	RC	151	short	198	medium	838156	pericentromeric	12989	no-CHH	no-CHH	.	.	.	.	.
Chr2	4471730	4472510	AT2TE18735	.	+	ATREP13	Helitron	RC	780	short	106	medium	838307	pericentromeric	12209	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4472510	4472568	AT2TE18740	.	+	ATREP13	Helitron	RC	58	tiny	106	medium	839087	pericentromeric	12151	no-CHH	no-CHH	.	.	.	.	.
Chr2	4472568	4473672	AT2TE18745	.	-	ATREP10A	Helitron	RC	1104	short	279	high	839145	pericentromeric	11047	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4473672	4473966	AT2TE18750	.	-	ATREP10D	Helitron	RC	294	short	1295	high	840249	pericentromeric	10753	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4473966	4474210	AT2TE18755	.	+	ATREP5	Helitron	RC	244	short	624	high	840543	pericentromeric	10509	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4474210	4476280	AT2TE18760	.	+	ATREP4	Helitron	RC	2070	medium	832	high	840787	pericentromeric	8439	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4476280	4476304	AT2TE18765	.	+	ATREP4	Helitron	RC	24	tiny	832	high	842857	pericentromeric	8415	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	4476304	4476375	AT2TE18770	.	+	ATREP15	Helitron	RC	71	tiny	1003	high	842881	pericentromeric	8344	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4476375	4476894	AT2TE18775	.	+	META1	Copia	LTR	519	short	138	medium	842952	pericentromeric	7825	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4483477	4483610	AT2TE18800	.	-	ATLINE1_6	L1	LINE	133	short	129	medium	850054	pericentromeric	1109	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	4485817	4486024	AT2TE18810	.	-	ATREP14	Helitron	RC	207	short	47	low	852394	pericentromeric	278	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	4486058	4486323	AT2TE18815	.	-	HELITRON3	Helitron	RC	265	short	53	medium	852635	pericentromeric	519	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	4489280	4490650	AT2TE18825	.	+	ATGP3	Gypsy	LTR	1370	short	60	medium	855857	pericentromeric	3741	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	4490650	4500765	AT2TE18830	.	-	ATLANTYS1	Gypsy	LTR	10115	long	153	medium	857227	pericentromeric	5111	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	4493569	4494011	+	transcript_id-"63de8583-277b-4202-b9b4-f83f303db1e5|3"
Chr2	4500770	4500830	AT2TE18835	.	+	HELITRON2	Helitron	RC	60	tiny	194	medium	867347	pericentromeric	15231	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	4500830	4502203	AT2TE18840	.	+	HELITRON4	Helitron	RC	1373	short	199	medium	867407	pericentromeric	15291	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	4502203	4502711	AT2TE18845	.	+	HELITRON2	Helitron	RC	508	short	194	medium	868780	pericentromeric	16664	no-RdDM	no-CHH	.	.	.	.	.
Chr2	4503120	4503980	AT2TE18850	.	+	HELITRON4	Helitron	RC	860	short	199	medium	869697	pericentromeric	17581	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	4503980	4504050	AT2TE18855	.	+	ATHILA4C	Gypsy	LTR	70	tiny	206	high	870557	pericentromeric	18441	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	4504053	4505918	AT2TE18860	.	-	ATHILA6A	Gypsy	LTR	1865	short	247	high	870630	pericentromeric	18514	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	4505918	4506990	AT2TE18865	.	+	ATHILA4C	Gypsy	LTR	1072	short	206	high	872495	pericentromeric	20379	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4507048	4507592	AT2TE18870	.	+	HELITRON1	Helitron	RC	544	short	130	medium	873625	pericentromeric	21509	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	4508416	4513686	AT2TE18875	.	+	VANDAL20	MuDR	DNA	5270	long	51	medium	874993	pericentromeric	22877	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	4511481	4512019	AT2TE18880	.	-	ATLANTYS1	Gypsy	LTR	538	short	153	medium	878058	pericentromeric	25942	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	4511788	4511563	-	transcript_id-"e5ef3857-777b-450f-b29a-a17758f28811|8"
Chr2	4513697	4517287	AT2TE18885	.	-	ATHILA2	Gypsy	LTR	3590	medium	413	high	880274	pericentromeric	25887	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	4517287	4518080	AT2TE18890	.	-	ATHILA6B	Gypsy	LTR	793	short	134	medium	883864	pericentromeric	25094	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	4518080	4522501	AT2TE18895	.	-	ATHILA6A	Gypsy	LTR	4421	medium	247	high	884657	pericentromeric	20673	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr2	4519041	4519070	AT2TE18900	.	-	ATHILA6A	Gypsy	LTR	29	tiny	247	high	885618	pericentromeric	24104	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr2	4522501	4522544	AT2TE18910	.	-	ATHILA2	Gypsy	LTR	43	tiny	413	high	889078	pericentromeric	20630	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	4522544	4524021	AT2TE18915	.	+	VANDAL20	MuDR	DNA	1477	short	51	medium	889121	pericentromeric	19153	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	4525971	4535960	AT2TE18920	.	+	VANDAL3	MuDR	DNA	9989	long	177	medium	892548	pericentromeric	7214	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	4535961	4536173	AT2TE18925	.	+	ATENSPM8	En-Spm	DNA	212	short	11	low	902538	pericentromeric	7001	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	4536173	4536650	AT2TE18930	.	+	ATHPOGO	Pogo	DNA	477	short	25	low	902750	pericentromeric	6524	no-CHH	no-CHH	.	.	.	.	.
Chr2	4536650	4538819	AT2TE18935	.	+	ATENSPM8	En-Spm	DNA	2169	medium	11	low	903227	pericentromeric	4355	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	4538820	4540514	AT2TE18940	.	+	VANDAL3	MuDR	DNA	1694	short	177	medium	905397	pericentromeric	2660	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	4541674	4542380	AT2TE18945	.	+	HELITRON4	Helitron	RC	706	short	199	medium	908251	pericentromeric	794	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	4542380	4543115	AT2TE18950	.	-	ATDNA2T9C	MuDR	DNA	735	short	242	high	908957	pericentromeric	59	PolIV-and-RDR6-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	4543115	4543182	AT2TE18955	.	-	ATDNA2T9B	MuDR	DNA	67	tiny	26	low	909692	pericentromeric	0	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	4545527	4547505	AT2TE18965	.	+	ATLINE1_4	L1	LINE	1978	short	102	medium	912104	pericentromeric	2005	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	4547505	4547526	AT2TE18970	.	+	ATLINE1_5	L1	LINE	21	tiny	91	medium	914082	pericentromeric	3983	no-CHH	no-RdDM	LowExpressed	.	.	.	.
Chr2	4547737	4558525	AT2TE18975	.	+	HELITRON4	Helitron	RC	10788	long	199	medium	914314	pericentromeric	4215	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	4558525	4566131	AT2TE18980	.	-	ATGP1	Gypsy	LTR	7606	long	144	medium	925102	pericentromeric	15003	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	4566141	4566581	AT2TE18985	.	+	ATCOPIA58	Copia	LTR	440	short	18	low	932718	pericentromeric	22619	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	4568066	4568090	AT2TE18990	.	+	ATREP10D	Helitron	RC	24	tiny	1295	high	934643	pericentromeric	21644	no-CHH	no-CHH	.	.	.	.	.
Chr2	4568090	4568305	AT2TE18995	.	+	ATREP4	Helitron	RC	215	short	832	high	934667	pericentromeric	21429	no-CHH	no-CHH	.	.	.	.	.
Chr2	4568305	4569680	AT2TE19000	.	-	HELITRONY3	Helitron	RC	1375	short	1399	high	934882	pericentromeric	20054	no-CHH	no-CHH	.	.	.	.	.
Chr2	4570280	4583000	AT2TE19005	.	-	ATHILA0_I	Gypsy	LTR	12720	long	138	medium	936857	pericentromeric	6734	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	4571796,4575086	4571118,4571205	-,-	transcript_id-"8cf4a0b5-c7e0-4ad3-827f-2cc5bf62fd45|3",transcript_id-"5c7d9374-8640-4be8-9004-844b1459e762|7"
Chr2	4583071	4584177	AT2TE19010	.	+	VANDAL20	MuDR	DNA	1106	short	51	medium	949648	pericentromeric	5557	no-RdDM	no-RdDM	ExpressedAndAnnotated	4583993	4583562	-	transcript_id-"25d540b6-2e0b-48f3-b222-25a8a50a37bd|9"
Chr2	4584860	4584958	AT2TE19015	.	-	ATHILA8B	Gypsy	LTR	98	tiny	78	medium	951437	pericentromeric	4776	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	4584958	4585887	AT2TE19020	.	-	ATHILA8A	Gypsy	LTR	929	short	97	medium	951535	pericentromeric	3847	no-RdDM	no-CHH	ExpressedAndAnnotated	4585322	4585127	-	transcript_id-"04713f5f-2cd1-4773-ad1e-fae7693eb4fd|4"
Chr2	4585887	4589538	AT2TE19025	.	+	ATHILA	Gypsy	LTR	3651	medium	198	medium	952464	pericentromeric	196	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	4589540	4589568	AT2TE19030	.	+	ATHILA6B	Gypsy	LTR	28	tiny	134	medium	956117	pericentromeric	166	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	4589568	4590885	AT2TE19035	.	-	VANDAL18	MuDR	DNA	1317	short	14	low	956145	pericentromeric	0	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	4590885	4592446	AT2TE19040	.	-	ATREP11	Helitron	RC	1561	short	841	high	957462	pericentromeric	507	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr2	4593320	4593530	AT2TE19045	.	-	HELITRON3	Helitron	RC	210	short	53	medium	959897	pericentromeric	2942	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	4593530	4593630	AT2TE19050	.	-	ATHILA6B	Gypsy	LTR	100	short	134	medium	960107	pericentromeric	3152	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr2	4593646	4598857	AT2TE19055	.	-	ATHILA6A	Gypsy	LTR	5211	long	247	high	960223	pericentromeric	3268	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	4595628	4595985	AT2TE19060	.	-	ATHILA2	Gypsy	LTR	357	short	413	high	962205	pericentromeric	5250	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	4595985	4597826	AT2TE19065	.	+	ATHILA4	Gypsy	LTR	1841	short	250	high	962562	pericentromeric	5607	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	4598864	4609295	AT2TE19070	.	-	VANDAL5	MuDR	DNA	10431	long	85	medium	965441	pericentromeric	8486	no-RdDM	no-RdDM	ExpressedAndAnnotated	4608123	4608554	+	transcript_id-"132125a3-039a-4302-bdf6-a9048118b31a|3"
Chr2	4604976	4607996	AT2TE19075	.	+	ATENSPM6	En-Spm	DNA	3020	medium	151	medium	971553	pericentromeric	11148	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	4609295	4609334	AT2TE19080	.	-	VANDAL5	MuDR	DNA	39	tiny	85	medium	975872	pericentromeric	9810	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	4609334	4609541	AT2TE19085	.	-	VANDAL5	MuDR	DNA	207	short	85	medium	975911	pericentromeric	9603	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	4609541	4609630	AT2TE19090	.	+	VANDAL4	MuDR	DNA	89	tiny	102	medium	976118	pericentromeric	9514	no-RdDM	no-CHH	.	.	.	.	.
Chr2	4609630	4610317	AT2TE19095	.	-	VANDAL4	MuDR	DNA	687	short	102	medium	976207	pericentromeric	8827	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	4610317	4610347	AT2TE19100	.	-	VANDAL4	MuDR	DNA	30	tiny	102	medium	976894	pericentromeric	8797	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	4610348	4610646	AT2TE19105	.	-	VANDAL5	MuDR	DNA	298	short	85	medium	976925	pericentromeric	8498	no-RdDM	no-CHH	.	.	.	.	.
Chr2	4610646	4615454	AT2TE19110	.	-	VANDAL5	MuDR	DNA	4808	medium	85	medium	977223	pericentromeric	3690	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	4615454	4615799	AT2TE19115	.	-	VANDAL5A	MuDR	DNA	345	short	56	medium	982031	pericentromeric	3345	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr2	4615799	4617477	AT2TE19120	.	+	ATHILA0_I	Gypsy	LTR	1678	short	138	medium	982376	pericentromeric	1667	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	4617477	4618126	AT2TE19125	.	-	VANDAL5	MuDR	DNA	649	short	85	medium	984054	pericentromeric	1018	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	4618135	4618416	AT2TE19130	.	+	ATREP3	Helitron	RC	281	short	1439	high	984712	pericentromeric	728	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4623544	4624517	AT2TE19160	.	+	AT9TSD1	MuDR	DNA	973	short	55	medium	990121	pericentromeric	1049	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	4623758	4623843	AT2TE19165	.	+	AT9TSD1	MuDR	DNA	85	tiny	55	medium	990335	pericentromeric	1263	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	4624689	4624741	AT2TE19170	.	+	VANDAL8	MuDR	DNA	52	tiny	123	medium	991266	pericentromeric	2194	no-RdDM	no-CHH	.	.	.	.	.
Chr2	4624741	4626159	AT2TE19175	.	+	VANDAL21	MuDR	DNA	1418	short	64	medium	991318	pericentromeric	2246	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	4626159	4626334	AT2TE19180	.	+	VANDAL17	MuDR	DNA	175	short	178	medium	992736	pericentromeric	3664	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	4626535	4626799	AT2TE19185	.	+	AT9TSD1	MuDR	DNA	264	short	55	medium	993112	pericentromeric	4040	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	4626799	4626845	AT2TE19190	.	-	ATENSPM3	En-Spm	DNA	46	tiny	98	medium	993376	pericentromeric	4304	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	4626845	4626895	AT2TE19195	.	-	ATENSPM3	En-Spm	DNA	50	tiny	98	medium	993422	pericentromeric	4350	RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	4626895	4631843	AT2TE19200	.	-	ATENSPM7	En-Spm	DNA	4948	medium	74	medium	993472	pericentromeric	2407	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	4631843	4632056	AT2TE19205	.	-	ATENSPM7	En-Spm	DNA	213	short	74	medium	998420	pericentromeric	2194	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr2	4632056	4632087	AT2TE19210	.	-	ATENSPM3	En-Spm	DNA	31	tiny	98	medium	998633	pericentromeric	2163	no-RdDM	no-CHH	.	.	.	.	.
Chr2	4632087	4632467	AT2TE19215	.	-	ATENSPM6	En-Spm	DNA	380	short	151	medium	998664	pericentromeric	1783	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	4633355	4633468	AT2TE19220	.	-	ATENSPM3	En-Spm	DNA	113	short	98	medium	999932	pericentromeric	782	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	4633477	4633658	AT2TE19225	.	+	VANDAL17	MuDR	DNA	181	short	178	medium	1000054	pericentromeric	592	no-RdDM	no-CHH	.	.	.	.	.
Chr2	4633782	4634294	AT2TE19230	.	+	AT9TSD1	MuDR	DNA	512	short	55	medium	1000359	pericentromeric	0	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	4635917	4635951	AT2TE19235	.	-	ATENSPM3	En-Spm	DNA	34	tiny	98	medium	1002494	pericentromeric	714	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	4635951	4641165	AT2TE19240	.	-	ATENSPM7	En-Spm	DNA	5214	long	74	medium	1002528	pericentromeric	748	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	4641165	4641378	AT2TE19245	.	-	ATENSPM7	En-Spm	DNA	213	short	74	medium	1007742	pericentromeric	5962	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	4641378	4641900	AT2TE19250	.	-	ATENSPM3	En-Spm	DNA	522	short	98	medium	1007955	pericentromeric	6175	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	4642726	4642902	AT2TE19255	.	+	VANDAL17	MuDR	DNA	176	short	178	medium	1009303	pericentromeric	7523	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	4643036	4643532	AT2TE19260	.	+	AT9TSD1	MuDR	DNA	496	short	55	medium	1009613	pericentromeric	7833	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	4643532	4643605	AT2TE19265	.	+	AT9TSD1	MuDR	DNA	73	tiny	55	medium	1010109	pericentromeric	8329	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	4643911	4644256	AT2TE19270	.	-	ATMU9	MuDR	DNA	345	short	16	low	1010488	pericentromeric	8708	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	4644471	4645636	AT2TE19275	.	+	VANDAL8	MuDR	DNA	1165	short	123	medium	1011048	pericentromeric	9268	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	4645996	4646220	AT2TE19280	.	+	ATENSPM3	En-Spm	DNA	224	short	98	medium	1012573	pericentromeric	10793	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	4647429	4647804	AT2TE19285	.	+	AT9TSD1	MuDR	DNA	375	short	55	medium	1014006	pericentromeric	10640	no-RdDM	no-CHH	.	.	.	.	.
Chr2	4648784	4649260	AT2TE19290	.	+	VANDAL17	MuDR	DNA	476	short	178	medium	1015361	pericentromeric	9184	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	4649260	4649309	AT2TE19295	.	+	VANDAL17	MuDR	DNA	49	tiny	178	medium	1015837	pericentromeric	9135	no-CHH	no-CHH	.	.	.	.	.
Chr2	4649831	4650018	AT2TE19300	.	+	HELITRONY3A	Helitron	RC	187	short	49	low	1016408	pericentromeric	8426	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	4650018	4650196	AT2TE19305	.	+	ATDNAI27T9A	MuDR	DNA	178	short	116	medium	1016595	pericentromeric	8248	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4650263	4650556	AT2TE19310	.	+	LIMPET1	MuDR	DNA	293	short	116	medium	1016840	pericentromeric	7888	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	4650996	4651023	AT2TE19315	.	-	HELITRONY1A	Helitron	RC	27	tiny	271	high	1017573	pericentromeric	7421	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr2	4651023	4651051	AT2TE19320	.	-	HELITRONY1A	Helitron	RC	28	tiny	271	high	1017600	pericentromeric	7393	DCL3-RdDM	no-RdDM	.	.	.	.	.
Chr2	4651051	4651656	AT2TE19325	.	+	ATDNA2T9A	MuDR	DNA	605	short	48	low	1017628	pericentromeric	6788	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	4651656	4651691	AT2TE19330	.	-	HELITRONY1A	Helitron	RC	35	tiny	271	high	1018233	pericentromeric	6753	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	4651691	4652045	AT2TE19335	.	+	HELITRONY1C	Helitron	RC	354	short	120	medium	1018268	pericentromeric	6399	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	4652852	4653363	AT2TE19340	.	+	ATREP10D	Helitron	RC	511	short	1295	high	1019429	pericentromeric	5081	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	4653363	4654348	AT2TE19345	.	+	HELITRONY1D	Helitron	RC	985	short	756	high	1019940	pericentromeric	4096	no-RdDM	no-CHH	.	.	.	.	.
Chr2	4654348	4654557	AT2TE19350	.	+	ATREP15	Helitron	RC	209	short	1003	high	1020925	pericentromeric	3887	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	4656356	4658311	AT2TE19355	.	+	VANDAL17	MuDR	DNA	1955	short	178	medium	1022933	pericentromeric	133	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	4662612	4662890	AT2TE19370	.	-	ATHPOGON1	Pogo	DNA	278	short	174	medium	1029189	pericentromeric	161	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	4662890	4663657	AT2TE19375	.	+	ATHPOGON2	Pogo	DNA	767	short	27	low	1029467	pericentromeric	439	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4668454	4668660	AT2TE19390	.	+	ATREP15	Helitron	RC	206	short	1003	high	1035031	pericentromeric	6003	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	4668660	4668843	AT2TE19395	.	+	HELITRONY1C	Helitron	RC	183	short	120	medium	1035237	pericentromeric	6209	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	4668851	4675676	AT2TE19400	.	+	HELITRON1	Helitron	RC	6825	long	130	medium	1035428	pericentromeric	2306	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	4669613	4670260	AT2TE19405	.	+	HELITRON1	Helitron	RC	647	short	130	medium	1036190	pericentromeric	7162	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	4674291	4675499	AT2TE19420	.	+	ATHILA4B_LTR	Gypsy	LTR	1208	short	143	medium	1040868	pericentromeric	2483	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4675687	4675710	AT2TE19425	.	-	ATHILA6A	Gypsy	LTR	23	tiny	247	high	1042264	pericentromeric	2272	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	4675710	4676312	AT2TE19430	.	-	ATHILA0_I	Gypsy	LTR	602	short	138	medium	1042287	pericentromeric	1670	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	4676312	4677891	AT2TE19435	.	-	ATHILA5	Gypsy	LTR	1579	short	131	medium	1042889	pericentromeric	91	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	4678231	4678488	AT2TE19440	.	-	ATHILA0_I	Gypsy	LTR	257	short	138	medium	1044808	pericentromeric	111	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	4678488	4683298	AT2TE19445	.	-	ATHILA3	Gypsy	LTR	4810	medium	243	high	1045065	pericentromeric	368	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	4680156	4680198	AT2TE19450	.	-	ATHILA3	Gypsy	LTR	42	tiny	243	high	1046733	pericentromeric	2036	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	4683300	4683936	AT2TE19460	.	-	ATHILA4A	Gypsy	LTR	636	short	310	high	1049877	pericentromeric	5180	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	4683936	4684618	AT2TE19465	.	+	HELITRON1	Helitron	RC	682	short	130	medium	1050513	pericentromeric	5816	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	4684618	4684652	AT2TE19470	.	+	ATENSPM1A	En-Spm	DNA	34	tiny	77	medium	1051195	pericentromeric	6498	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	4684652	4687069	AT2TE19475	.	+	ATENSPM2	En-Spm	DNA	2417	medium	114	medium	1051229	pericentromeric	6532	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	4685051,4685144,4686436	4685313,4687802,4686607	+,+,+	transcript_id-"1c4a6673-ba65-4fb2-91e6-9e1b7796b186|3",transcript_id-"55b0f775-a1f0-4145-a5f5-97a5dc0c1693|3",transcript_id-"9667dadf-617e-40f4-8c66-a59996100297|3"
Chr2	4687069	4687423	AT2TE19480	.	+	ATHILA	Gypsy	LTR	354	short	198	medium	1053646	pericentromeric	8949	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	4685144	4687802	+	transcript_id-"55b0f775-a1f0-4145-a5f5-97a5dc0c1693|3"
Chr2	4687423	4689870	AT2TE19485	.	+	ATHILA6B	Gypsy	LTR	2447	medium	134	medium	1054000	pericentromeric	9303	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	4685144,4687680,4687680,4687684	4687802,4689983,4690033,4689950	+,+,+,+	transcript_id-"55b0f775-a1f0-4145-a5f5-97a5dc0c1693|3",transcript_id-"60628971-19b2-46ae-aab5-e6c57c453871|4",transcript_id-"d3bb707b-e66e-4b74-bf11-ff7abbef901b|3",transcript_id-"a0d1d574-5812-435b-9c48-69e4df8126ed|3"
Chr2	4688488	4688511	AT2TE19490	.	+	ATHILA2	Gypsy	LTR	23	tiny	413	high	1055065	pericentromeric	10368	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	4689870	4690772	AT2TE19495	.	-	ATHILA3	Gypsy	LTR	902	short	243	high	1056447	pericentromeric	11750	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	4690776	4691253	AT2TE19500	.	+	ATHILA4C	Gypsy	LTR	477	short	206	high	1057353	pericentromeric	12656	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4691253	4693499	AT2TE19505	.	-	ATENSPM11	En-Spm	DNA	2246	medium	47	low	1057830	pericentromeric	13133	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	4693499	4693801	AT2TE19510	.	+	ATHILA	Gypsy	LTR	302	short	198	medium	1060076	pericentromeric	15379	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	4693801	4694973	AT2TE19515	.	+	ATHILA	Gypsy	LTR	1172	short	198	medium	1060378	pericentromeric	15681	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	4694973	4695200	AT2TE19520	.	+	ATHILA0_I	Gypsy	LTR	227	short	138	medium	1061550	pericentromeric	16853	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	4695200	4695259	AT2TE19525	.	+	ATHILA	Gypsy	LTR	59	tiny	198	medium	1061777	pericentromeric	17080	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	4695259	4695877	AT2TE19530	.	+	ATHILA	Gypsy	LTR	618	short	198	medium	1061836	pericentromeric	17139	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	4695877	4699577	AT2TE19535	.	+	ATHILA	Gypsy	LTR	3700	medium	198	medium	1062454	pericentromeric	17757	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	4699596	4704005	AT2TE19540	.	-	ATENSPM11	En-Spm	DNA	4409	medium	47	low	1066173	pericentromeric	20030	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	4700223	4700329	AT2TE19545	.	-	ATENSPM10	En-Spm	DNA	106	short	81	medium	1066800	pericentromeric	22103	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	4702800	4706947	AT2TE19555	.	+	ATCOPIA34	Copia	LTR	4147	medium	16	low	1069377	pericentromeric	17088	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	4706947	4707147	AT2TE19560	.	+	ATCOPIA34	Copia	LTR	200	short	16	low	1073524	pericentromeric	16888	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	4707147	4709667	AT2TE19565	.	-	ATENSPM10	En-Spm	DNA	2520	medium	81	medium	1073724	pericentromeric	14368	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	4709667	4709689	AT2TE19570	.	+	ATHILA4B_LTR	Gypsy	LTR	22	tiny	143	medium	1076244	pericentromeric	14346	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4709689	4713536	AT2TE19575	.	+	ATHILA4	Gypsy	LTR	3847	medium	250	high	1076266	pericentromeric	10499	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	4713536	4714827	AT2TE19580	.	+	ATHILA4A	Gypsy	LTR	1291	short	310	high	1080113	pericentromeric	9208	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	4714827	4715984	AT2TE19585	.	+	ATHILA4C	Gypsy	LTR	1157	short	206	high	1081404	pericentromeric	8051	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	4715984	4723844	AT2TE19590	.	+	ATHILA4C	Gypsy	LTR	7860	long	206	high	1082561	pericentromeric	191	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	4722752,4722752	4723062,4723105	+,+	transcript_id-"fd6f029f-3f20-44eb-a49d-5af191003e75|3",transcript_id-"0bc104a0-200d-4cef-982a-eceb2a397c60|15"
Chr2	4724592	4725018	AT2TE19595	.	-	ATENSPM2	En-Spm	DNA	426	short	114	medium	1091169	pericentromeric	449	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	4725034	4726100	AT2TE19600	.	-	ATENSPM1A	En-Spm	DNA	1066	short	77	medium	1091611	pericentromeric	891	no-RdDM	no-RdDM	ExpressedAndAnnotated	4725242,4727149	4723771,4725803	-,-	transcript_id-"6ccaea6e-f8f4-48bb-8487-edcce09fd8ad|5",transcript_id-"5f8bb390-0279-407a-af32-c43c082d506b|3"
Chr2	4728861	4729352	AT2TE19610	.	+	ATGP10	Gypsy	LTR	491	short	165	medium	1095438	pericentromeric	622	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	4727560,4727560	4729124,4729132	+,+	transcript_id-"dd683b3e-7919-492f-9716-3c64c85a484d|1076",transcript_id-"c31de75e-ce4c-4a04-a7e8-52155f90ca53|228"
Chr2	4729403	4737545	AT2TE19615	.	-	VANDAL21	MuDR	DNA	8142	long	64	medium	1095980	pericentromeric	1164	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	4727560,4727560,4730019,4730040,4730061,4734913	4731774,4731777,4731771,4730767,4730787,4734617	+,+,+,+,+,-	transcript_id-"5beeeb2c-3bbb-4b4e-8454-bf09c0470f35|21",transcript_id-"ed36fd76-c97c-454e-a3bf-5e43652655dc|17",transcript_id-"3de03ef4-3562-4823-a920-adb84e5189db|18",transcript_id-"cffaa5aa-4b3e-4364-85f4-1b35c0e46302|10",transcript_id-"82e0f35a-8f14-486e-a688-ec4c50c41e48|3",transcript_id-"54e39c1f-95d7-4d06-906e-ff724403bf17|4"
Chr2	4731188	4731232	AT2TE19620	.	+	ATHILA4B_LTR	Gypsy	LTR	44	tiny	143	medium	1097765	pericentromeric	2949	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	4731232	4732460	AT2TE19625	.	+	ATHILA4C	Gypsy	LTR	1228	short	206	high	1097809	pericentromeric	2993	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	4727560,4730019	4731777,4731771	+,+	transcript_id-"ed36fd76-c97c-454e-a3bf-5e43652655dc|17",transcript_id-"3de03ef4-3562-4823-a920-adb84e5189db|18"
Chr2	4737699	4738951	AT2TE19650	.	-	ATLINE1A	L1	LINE	1252	short	289	high	1104276	pericentromeric	4436	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	4738961	4739203	AT2TE19655	.	-	ATLANTYS1	Gypsy	LTR	242	short	153	medium	1105538	pericentromeric	4184	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	4739610	4741325	AT2TE19660	.	-	TAT1_ATH	Gypsy	LTR	1715	short	87	medium	1106187	pericentromeric	2062	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	4741325	4742126	AT2TE19665	.	-	ATLINE1A	L1	LINE	801	short	289	high	1107902	pericentromeric	1261	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4742126	4742819	AT2TE19670	.	-	BRODYAGA2	MuDR	DNA	693	short	525	high	1108703	pericentromeric	568	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	4742819	4742913	AT2TE19675	.	+	ATREP15	Helitron	RC	94	tiny	1003	high	1109396	pericentromeric	474	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr2	4744893	4745525	AT2TE19685	.	+	TAG3N1	HAT	DNA	632	short	97	medium	1111470	pericentromeric	0	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	4745526	4745553	AT2TE19690	.	+	TAG3N1	HAT	DNA	27	tiny	97	medium	1112103	pericentromeric	0	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	4746616	4747589	AT2TE19695	.	-	ATREP3	Helitron	RC	973	short	1439	high	1113193	pericentromeric	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	4747608	4748497	AT2TE19700	.	+	SIMPLEHAT2	HAT	DNA	889	short	73	medium	1114185	pericentromeric	975	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr2	4748516	4752465	AT2TE19705	.	-	ATREP10D	Helitron	RC	3949	medium	1295	high	1115093	pericentromeric	1883	no-CHH	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	4749917	4749999	AT2TE19710	.	+	HELITRONY3	Helitron	RC	82	tiny	1399	high	1116494	pericentromeric	3284	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	4749999	4750785	AT2TE19715	.	-	ATREP15	Helitron	RC	786	short	1003	high	1116576	pericentromeric	3366	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	4750785	4751089	AT2TE19720	.	+	ATCOPIA94	Copia	LTR	304	short	39	low	1117362	pericentromeric	4152	no-CHH	no-CHH	.	.	.	.	.
Chr2	4751210	4751496	AT2TE19725	.	-	ATHILA4A	Gypsy	LTR	286	short	310	high	1117787	pericentromeric	4577	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	4752473	4752791	AT2TE19730	.	+	HELITRONY3	Helitron	RC	318	short	1399	high	1119050	pericentromeric	5840	no-CHH	no-CHH	.	.	.	.	.
Chr2	4752791	4756820	AT2TE19735	.	-	ATLINE1A	L1	LINE	4029	medium	289	high	1119368	pericentromeric	6158	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4757857	4757879	AT2TE19740	.	-	ATREP11A	Helitron	RC	22	tiny	95	medium	1124434	pericentromeric	11224	no-CHH	no-CHH	.	.	.	.	.
Chr2	4757879	4758824	AT2TE19745	.	-	ATREP2A	Helitron	RC	945	short	116	medium	1124456	pericentromeric	11246	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4758824	4759615	AT2TE19750	.	-	ATREP10D	Helitron	RC	791	short	1295	high	1125401	pericentromeric	12191	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4759615	4759733	AT2TE19755	.	-	ATREP11A	Helitron	RC	118	short	95	medium	1126192	pericentromeric	12982	no-CHH	no-CHH	.	.	.	.	.
Chr2	4759763	4759875	AT2TE19760	.	-	ATREP7	Helitron	RC	112	short	164	medium	1126340	pericentromeric	13130	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr2	4760268	4760430	AT2TE19765	.	+	ATHILA4B_LTR	Gypsy	LTR	162	short	143	medium	1126845	pericentromeric	13635	no-CHH	no-CHH	.	.	.	.	.
Chr2	4760430	4761615	AT2TE19770	.	+	ATHILA4D_LTR	Gypsy	LTR	1185	short	106	medium	1127007	pericentromeric	13797	no-CHH	no-RdDM	.	.	.	.	.
Chr2	4762274	4762624	AT2TE19775	.	+	ATREP19	.	DNA	350	short	189	medium	1128851	pericentromeric	15641	no-CHH	no-CHH	.	.	.	.	.
Chr2	4766901	4767072	AT2TE19790	.	-	ATDNAI27T9A	MuDR	DNA	171	short	116	medium	1133478	pericentromeric	20268	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	4769834	4769923	AT2TE19800	.	+	ATENSPM11	En-Spm	DNA	89	tiny	47	low	1136411	pericentromeric	19503	no-RdDM	no-CHH	.	.	.	.	.
Chr2	4771382	4771461	AT2TE19805	.	-	ATMU1	MuDR	DNA	79	tiny	59	medium	1137959	pericentromeric	17965	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4771785	4772179	AT2TE19810	.	-	ATLINE1_5	L1	LINE	394	short	91	medium	1138362	pericentromeric	17247	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4772179	4772202	AT2TE19815	.	-	ATLINE1_5	L1	LINE	23	tiny	91	medium	1138756	pericentromeric	17224	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	4773810	4773849	AT2TE19820	.	-	ATHILA4D_LTR	Gypsy	LTR	39	tiny	106	medium	1140387	pericentromeric	15577	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	4773849	4775331	AT2TE19825	.	-	ATHILA4C	Gypsy	LTR	1482	short	206	high	1140426	pericentromeric	14095	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4775332	4775370	AT2TE19830	.	-	BRODYAGA1A	MuDR	DNA	39	tiny	586	high	1141908	pericentromeric	14056	.	.	.	.	.	.	.
Chr2	4775370	4775601	AT2TE19835	.	-	ATHILA4A	Gypsy	LTR	231	short	310	high	1141947	pericentromeric	13825	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	4775605	4775629	AT2TE19840	.	-	ATHILA3	Gypsy	LTR	24	tiny	243	high	1142182	pericentromeric	13797	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	4775629	4777898	AT2TE19845	.	-	ATHILA3	Gypsy	LTR	2269	medium	243	high	1142206	pericentromeric	11528	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	4777901	4781421	AT2TE19850	.	-	ATHILA3	Gypsy	LTR	3520	medium	243	high	1144478	pericentromeric	8005	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	4781421	4783565	AT2TE19855	.	-	ATHILA4C	Gypsy	LTR	2144	medium	206	high	1147998	pericentromeric	5861	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	4783568	4784809	AT2TE19860	.	-	ATHILA4	Gypsy	LTR	1241	short	250	high	1150145	pericentromeric	4617	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4786693	4787556	AT2TE19865	.	-	HELITRON2	Helitron	RC	863	short	194	medium	1153270	pericentromeric	1870	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	4788266	4788437	AT2TE19870	.	-	ATREP7	Helitron	RC	171	short	164	medium	1154843	pericentromeric	989	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	4788437	4788812	AT2TE19875	.	-	HELITRONY3	Helitron	RC	375	short	1399	high	1155014	pericentromeric	614	no-RdDM	no-CHH	.	.	.	.	.
Chr2	4790691	4790954	AT2TE19880	.	+	DT1	Mariner	DNA	263	short	123	medium	1157268	pericentromeric	1043	no-RdDM	no-CHH	.	.	.	.	.
Chr2	4792833	4795747	AT2TE19885	.	-	ATREP10D	Helitron	RC	2914	medium	1295	high	1159410	pericentromeric	3185	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4795748	4795907	AT2TE19890	.	+	ATREP3	Helitron	RC	160	short	1439	high	1162324	pericentromeric	6099	.	.	.	.	.	.	.
Chr2	4795907	4796348	AT2TE19895	.	+	ATREP11	Helitron	RC	441	short	841	high	1162484	pericentromeric	6259	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4796348	4797386	AT2TE19900	.	+	ATREP11A	Helitron	RC	1038	short	95	medium	1162925	pericentromeric	5612	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	4800142	4800375	AT2TE19910	.	+	ATGP3	Gypsy	LTR	233	short	60	medium	1166719	pericentromeric	2623	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	4801103	4801284	AT2TE19915	.	+	ATGP9B	Gypsy	LTR	181	short	27	low	1167680	pericentromeric	1714	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	4805854	4805893	AT2TE19930	.	+	ATENSPM6	En-Spm	DNA	39	tiny	151	medium	1172431	pericentromeric	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	4806074	4806179	AT2TE19935	.	+	ATCOPIA24	Copia	LTR	105	short	27	low	1172651	pericentromeric	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	4807305	4807337	AT2TE19940	.	+	ATREP10B	Helitron	RC	32	tiny	491	high	1173882	pericentromeric	141	no-CHH	no-CHH	.	.	.	.	.
Chr2	4807337	4807961	AT2TE19945	.	+	ATREP5	Helitron	RC	624	short	624	high	1173914	pericentromeric	173	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	4807961	4808002	AT2TE19950	.	-	HELITRONY1D	Helitron	RC	41	tiny	756	high	1174538	pericentromeric	797	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr2	4812328	4815931	AT2TE19970	.	-	ATLANTYS1	Gypsy	LTR	3603	medium	153	medium	1178905	pericentromeric	5164	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	4815931	4815977	AT2TE19975	.	-	ATLANTYS1	Gypsy	LTR	46	tiny	153	medium	1182508	pericentromeric	8767	no-RdDM	no-CHH	.	.	.	.	.
Chr2	4815991	4816497	AT2TE19980	.	-	ATLANTYS1	Gypsy	LTR	506	short	153	medium	1182568	pericentromeric	8827	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr2	4816910	4818664	AT2TE19985	.	-	TAT1_ATH	Gypsy	LTR	1754	short	87	medium	1183487	pericentromeric	9746	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	4818683	4818884	AT2TE19990	.	+	ATCOPIA57	Copia	LTR	201	short	48	low	1185260	pericentromeric	11519	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr2	4818884	4822043	AT2TE19995	.	+	ATCOPIA36	Copia	LTR	3159	medium	14	low	1185461	pericentromeric	11720	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr2	4822592	4823694	AT2TE20000	.	+	ATENSPM3	En-Spm	DNA	1102	short	98	medium	1189169	pericentromeric	15428	no-RdDM	no-CHH	ExpressedAndAnnotated	4822839,4822853	4823820,4823345	+,+	transcript_id-"3a0f1aca-8930-470a-9b81-53f8b21d0c1d|3",transcript_id-"e0db4219-c82f-4488-a025-81806d10544e|3"
Chr2	4823783	4824037	AT2TE20005	.	+	ATENSPM3	En-Spm	DNA	254	short	98	medium	1190360	pericentromeric	16619	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	4824787	4826159	AT2TE20010	.	+	ATCOPIA36	Copia	LTR	1372	short	14	low	1191364	pericentromeric	17623	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	4826396	4827613	AT2TE20015	.	-	VANDAL21	MuDR	DNA	1217	short	64	medium	1192973	pericentromeric	19232	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr2	4827632	4829199	AT2TE20020	.	+	ATENSPM2	En-Spm	DNA	1567	short	114	medium	1194209	pericentromeric	20468	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	4829280	4829821	AT2TE20025	.	+	VANDAL13	MuDR	DNA	541	short	38	low	1195857	pericentromeric	22116	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	4829821	4830253	AT2TE20030	.	+	ATENSPM11	En-Spm	DNA	432	short	47	low	1196398	pericentromeric	22657	no-RdDM	no-CHH	ExpressedAndAnnotated	4830058,4830065	4831913,4831916	+,+	transcript_id-"189c85c6-fdb2-4053-9565-0abe3540791b|4",transcript_id-"74dc8dac-a8e9-4654-85cf-fea8836490ee|3"
Chr2	4831739	4831814	AT2TE20035	.	+	HELITRONY1D	Helitron	RC	75	tiny	756	high	1198316	pericentromeric	24575	DCL3-RdDM	no-CHH	ExpressedAndAnnotated	4831109	4831913	+	transcript_id-"349fa3ca-e559-4efa-91b0-41a482e5854d|6"
Chr2	4831814	4832215	AT2TE20040	.	+	ATENSPM10	En-Spm	DNA	401	short	81	medium	1198391	pericentromeric	24650	no-RdDM	no-CHH	ExpressedAndAnnotated	4830058,4830065,4831109	4831913,4831916,4831913	+,+,+	transcript_id-"189c85c6-fdb2-4053-9565-0abe3540791b|4",transcript_id-"74dc8dac-a8e9-4654-85cf-fea8836490ee|3",transcript_id-"349fa3ca-e559-4efa-91b0-41a482e5854d|6"
Chr2	4832216	4836549	AT2TE20045	.	+	VANDAL13	MuDR	DNA	4333	medium	38	low	1198793	pericentromeric	25052	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	4834787	4835344	+	transcript_id-"76baa681-6ab4-4760-be01-88d5259f849d|10"
Chr2	4833803	4834568	AT2TE20050	.	+	HELITRONY1D	Helitron	RC	765	short	756	high	1200380	pericentromeric	26639	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4835619	4835933	AT2TE20055	.	+	VANDAL14	MuDR	DNA	314	short	25	low	1202196	pericentromeric	28455	no-RdDM	no-CHH	.	.	.	.	.
Chr2	4836555	4838296	AT2TE20060	.	+	ATGP10	Gypsy	LTR	1741	short	165	medium	1203132	pericentromeric	29391	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4837147	4837888	AT2TE20065	.	-	ATHILA4C	Gypsy	LTR	741	short	206	high	1203724	pericentromeric	29983	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4838296	4838481	AT2TE20070	.	-	ATHILA4B_LTR	Gypsy	LTR	185	short	143	medium	1204873	pericentromeric	31132	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr2	4838481	4848343	AT2TE20075	.	+	ATHILA4C	Gypsy	LTR	9862	long	206	high	1205058	pericentromeric	31317	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	4848343	4848498	AT2TE20080	.	+	ATHILA4C	Gypsy	LTR	155	short	206	high	1214920	pericentromeric	41179	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4848498	4850618	AT2TE20085	.	-	ATHILA4A	Gypsy	LTR	2120	medium	310	high	1215075	pericentromeric	39647	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4850618	4850642	AT2TE20090	.	-	ATHILA4	Gypsy	LTR	24	tiny	250	high	1217195	pericentromeric	39623	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	4850642	4852159	AT2TE20095	.	-	ATHILA4	Gypsy	LTR	1517	short	250	high	1217219	pericentromeric	38106	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	4852159	4852583	AT2TE20100	.	+	ATHILA3	Gypsy	LTR	424	short	243	high	1218736	pericentromeric	37682	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	4852583	4856562	AT2TE20105	.	+	ATHILA3	Gypsy	LTR	3979	medium	243	high	1219160	pericentromeric	33703	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	4852896	4854426	+	transcript_id-"db6ef635-4a27-417b-8364-19baf8d09c80|51"
Chr2	4853655	4855287	AT2TE20110	.	+	ATHILA8A	Gypsy	LTR	1632	short	97	medium	1220232	pericentromeric	34978	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	4859469	4859808	AT2TE20130	.	-	ATHILA4A	Gypsy	LTR	339	short	310	high	1226046	pericentromeric	30457	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4859812	4860670	AT2TE20135	.	+	ATGP10	Gypsy	LTR	858	short	165	medium	1226389	pericentromeric	29595	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4861228	4869425	AT2TE20140	.	-	VANDAL21	MuDR	DNA	8197	long	64	medium	1227805	pericentromeric	20840	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	4865615,4866457	4864760,4866249	-,-	transcript_id-"d1baa3db-9d2f-42ee-937a-f8a5ac6d7813|5",transcript_id-"421c4efc-ca26-4fb1-91f5-ca12e3d2ffe0|3"
Chr2	4869617	4870414	AT2TE20145	.	+	ATREP15	Helitron	RC	797	short	1003	high	1236194	pericentromeric	19851	no-RdDM	no-CHH	.	.	.	.	.
Chr2	4870414	4870647	AT2TE20150	.	-	ATREP10B	Helitron	RC	233	short	491	high	1236991	pericentromeric	19618	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	4872002	4872533	AT2TE20155	.	+	ATREP4	Helitron	RC	531	short	832	high	1238579	pericentromeric	17732	no-CHH	no-CHH	.	.	.	.	.
Chr2	4873129	4888043	AT2TE20160	.	-	VANDAL1	MuDR	DNA	14914	long	80	medium	1239706	pericentromeric	2222	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	4878917,4878917	4879779,4879846	+,+	transcript_id-"cfd2ca09-2b79-44bd-80c6-74491c9a4600|7",transcript_id-"67a31ccd-7e7e-4372-8a1f-43bebecb2560|7"
Chr2	4889268	4890107	AT2TE20165	.	+	ATHATN10	HAT	DNA	839	short	48	low	1255845	pericentromeric	158	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	4891468	4890017	-	transcript_id-"38b428f1-c29b-4258-a316-d2c5db8e2ef0|3"
Chr2	4890915	4891675	AT2TE20170	.	+	VANDAL2N1	MuDR	DNA	760	short	51	medium	1257492	pericentromeric	0	no-CHH	no-CHH	ExpressedAndAnnotated	4891468,4891474	4890017,4890087	-,-	transcript_id-"38b428f1-c29b-4258-a316-d2c5db8e2ef0|3",transcript_id-"269bedae-1f79-4b48-a26a-b4a07ed9ddfd|3"
Chr2	4893330	4893397	AT2TE20175	.	-	HELITRONY3	Helitron	RC	67	tiny	1399	high	1259907	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	4893397	4894625	AT2TE20180	.	-	ATREP3	Helitron	RC	1228	short	1439	high	1259974	pericentromeric	52	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4895390	4895814	AT2TE20185	.	-	TA11	L1	LINE	424	short	157	medium	1261967	pericentromeric	2045	no-RdDM	no-CHH	.	.	.	.	.
Chr2	4896051	4897744	AT2TE20190	.	-	ATLINE1_4	L1	LINE	1693	short	102	medium	1262628	pericentromeric	2706	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr2	4898644	4898723	AT2TE20195	.	-	TA11	L1	LINE	80	tiny	157	medium	1265220	pericentromeric	1927	.	.	LowExpressed	.	.	.	.
Chr2	4900802	4909281	AT2TE20205	.	+	ATENSPM3	En-Spm	DNA	8479	long	98	medium	1267379	pericentromeric	0	no-RdDM	no-CHH	ExpressedAndAnnotated	4901000,4901032	4908931,4908966	+,+	transcript_id-"a467b140-f577-4364-86ef-2742f84313d1|5",transcript_id-"44b87348-8379-4d9e-8527-8c7bed9c6b17|21"
Chr2	4909282	4909316	AT2TE20210	.	+	ATENSPM7	En-Spm	DNA	35	tiny	74	medium	1275858	pericentromeric	8337	.	.	.	.	.	.	.
Chr2	4910262	4910285	AT2TE20215	.	-	ATENSPM6	En-Spm	DNA	23	tiny	151	medium	1276839	pericentromeric	9318	no-RdDM	no-CHH	.	.	.	.	.
Chr2	4910285	4919074	AT2TE20220	.	-	ATENSPM5	En-Spm	DNA	8789	long	111	medium	1276862	pericentromeric	3249	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	4914221	4910997	-	transcript_id-"c50b6bd0-ac15-4d5b-91de-7e590a480a3f|9"
Chr2	4919705	4919735	AT2TE20225	.	-	ATLINE1_5	L1	LINE	31	tiny	91	medium	1286281	pericentromeric	2588	.	.	.	.	.	.	.
Chr2	4919735	4920396	AT2TE20230	.	-	TA11	L1	LINE	661	short	157	medium	1286312	pericentromeric	1927	no-RdDM	no-CHH	ExpressedAndAnnotated	4920679	4920109	-	transcript_id-"2517dfa9-5c59-4139-9616-e59a153bef87|19"
Chr2	4925088	4925170	AT2TE20250	.	+	ATHILA4C	Gypsy	LTR	82	tiny	206	high	1291665	pericentromeric	587	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	4925170	4933931	AT2TE20255	.	-	ATENSPM5	En-Spm	DNA	8761	long	111	medium	1291747	pericentromeric	669	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	4928928	4925888	-	transcript_id-"d6937cbb-3828-45a6-b208-f2dbc74a0f23|8"
Chr2	4933931	4937269	AT2TE20260	.	+	ATHILA2	Gypsy	LTR	3338	medium	413	high	1300508	pericentromeric	9430	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	4937269	4937528	AT2TE20265	.	+	ATHILA4C	Gypsy	LTR	259	short	206	high	1303846	pericentromeric	12768	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	4938515	4938640	AT2TE20270	.	-	RathE1_cons	.	RathE1_cons	125	short	213	high	1305092	pericentromeric	14014	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	4938989	4939660	AT2TE20275	.	-	ATHPOGON2	Pogo	DNA	671	short	27	low	1305566	pericentromeric	14488	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4942001	4942160	AT2TE20285	.	-	ATHAT1	HAT	DNA	159	short	105	medium	1308578	pericentromeric	17500	PolIV-and-RDR6-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	4942160	4942790	AT2TE20290	.	+	ATREP1	Helitron	RC	630	short	498	high	1308737	pericentromeric	17659	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	4942790	4945075	AT2TE20295	.	+	ATREP10D	Helitron	RC	2285	medium	1295	high	1309367	pericentromeric	18289	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	4945075	4945121	AT2TE20300	.	-	HELITRONY3	Helitron	RC	46	tiny	1399	high	1311652	pericentromeric	20574	no-CHH	no-CHH	.	.	.	.	.
Chr2	4946229	4946524	AT2TE20305	.	+	ATCOPIA34	Copia	LTR	295	short	16	low	1312806	pericentromeric	21728	no-RdDM	no-CHH	.	.	.	.	.
Chr2	4947601	4947647	AT2TE20310	.	+	ATMU10	MuDR	DNA	46	tiny	87	medium	1314178	pericentromeric	23100	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	4947647	4948280	AT2TE20315	.	+	ATMU10	MuDR	DNA	633	short	87	medium	1314224	pericentromeric	23146	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	4948280	4948333	AT2TE20320	.	-	ATMU10	MuDR	DNA	53	tiny	87	medium	1314857	pericentromeric	23779	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	4948602	4948690	AT2TE20325	.	+	ATHILA5	Gypsy	LTR	88	tiny	131	medium	1315179	pericentromeric	24101	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	4948690	4959161	AT2TE20330	.	+	ATHILA5	Gypsy	LTR	10471	long	131	medium	1315267	pericentromeric	24189	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	4948877,4956185,4956185,4956746,4957287	4949381,4958057,4958203,4956971,4958163	+,+,+,+,+	transcript_id-"b3b9e312-bc6a-4e79-83c8-4d7dd06a0443|4",transcript_id-"ecec5e31-35e3-4d84-b4f0-3bbe3704615b|8",transcript_id-"494f38b0-ec03-4b0d-80a6-85837a9bc3da|496",transcript_id-"7ff87f36-dd98-49ee-a2ea-dae6837eeae3",transcript_id-"2701d6e4-24bc-4a17-b0b9-ddfa1c80340c|6"
Chr2	4959497	4959918	AT2TE20335	.	-	HARBINGER	Harbinger	DNA	421	short	90	medium	1326074	pericentromeric	34996	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	4959633,4959647,4959404	4959187,4959344,4959826	-,-,+	transcript_id-"22558302-50c8-43ca-ac6d-755bb7249960|8",transcript_id-"044bcb24-ecea-4970-8629-819a3f65e889|21",transcript_id-"0c56e564-b478-4c4d-8541-a0ff8131ca21|7"
Chr2	4960217	4960269	AT2TE20340	.	-	ATREP10D	Helitron	RC	52	tiny	1295	high	1326794	pericentromeric	35716	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	4960269	4961257	AT2TE20345	.	-	ATREP10D	Helitron	RC	988	short	1295	high	1326846	pericentromeric	35768	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4961257	4961404	AT2TE20350	.	+	ATREP3	Helitron	RC	147	short	1439	high	1327834	pericentromeric	36756	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4961723	4961869	AT2TE20355	.	-	ATREP1	Helitron	RC	146	short	498	high	1328300	pericentromeric	37222	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4961869	4962551	AT2TE20360	.	-	ATREP5	Helitron	RC	682	short	624	high	1328446	pericentromeric	37368	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	4964251	4964512	AT2TE20365	.	-	HARBINGER	Harbinger	DNA	261	short	90	medium	1330828	pericentromeric	39750	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	4965022	4965612	AT2TE20370	.	-	HELITRONY1D	Helitron	RC	590	short	756	high	1331599	pericentromeric	39531	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	4965612	4965659	AT2TE20375	.	+	HELITRONY1E	Helitron	RC	47	tiny	447	high	1332189	pericentromeric	39484	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	4965990	4966118	AT2TE20380	.	-	ATREP4	Helitron	RC	128	short	832	high	1332567	pericentromeric	39025	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	4966118	4966141	AT2TE20385	.	+	BRODYAGA1A	MuDR	DNA	23	tiny	586	high	1332695	pericentromeric	39002	no-CHH	no-CHH	.	.	.	.	.
Chr2	4966141	4966654	AT2TE20390	.	+	ATREP11	Helitron	RC	513	short	841	high	1332718	pericentromeric	38489	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4967927	4969477	AT2TE20395	.	-	TA11	L1	LINE	1550	short	157	medium	1334504	pericentromeric	35666	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	4969477	4969608	AT2TE20400	.	-	ATLINE1_6	L1	LINE	131	short	129	medium	1336054	pericentromeric	35535	no-RdDM	no-CHH	.	.	.	.	.
Chr2	4970346	4970547	AT2TE20405	.	-	ATLINE1_6	L1	LINE	201	short	129	medium	1336923	pericentromeric	34596	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	4972355	4972375	AT2TE20410	.	-	BRODYAGA2	MuDR	DNA	21	tiny	525	high	1338931	pericentromeric	32768	.	.	.	.	.	.	.
Chr2	4972375	4972927	AT2TE20415	.	+	HELITRONY1D	Helitron	RC	552	short	756	high	1338952	pericentromeric	32216	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4973336	4978133	AT2TE20420	.	-	ATHILA3	Gypsy	LTR	4797	medium	243	high	1339913	pericentromeric	27010	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	4978137	4978332	AT2TE20425	.	+	ATLANTYS1	Gypsy	LTR	195	short	153	medium	1344714	pericentromeric	26811	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4978332	4978468	AT2TE20430	.	+	ATHILA6A	Gypsy	LTR	136	short	247	high	1344909	pericentromeric	26675	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	4978468	4990075	AT2TE20435	.	+	ATLANTYS1	Gypsy	LTR	11607	long	153	medium	1345045	pericentromeric	15068	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	4990077	4991751	AT2TE20440	.	+	ATHILA6A	Gypsy	LTR	1674	short	247	high	1356654	pericentromeric	13392	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	4989889	4990764	+	transcript_id-"839861f8-9b87-40e5-bc1c-e0907af3188f|5"
Chr2	4991762	4993953	AT2TE20445	.	-	ATGP2N	Gypsy	LTR	2191	medium	54	medium	1358339	pericentromeric	11190	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	4993954	4995953	AT2TE20450	.	+	ATLANTYS1	Gypsy	LTR	1999	short	153	medium	1360531	pericentromeric	9190	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	4995647	4995861	+	transcript_id-"1550ed3f-31f7-4907-acd2-31091679dfd2|6"
Chr2	4996263	4996578	AT2TE20455	.	+	HELITRON1	Helitron	RC	315	short	130	medium	1362840	pericentromeric	8565	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	4996926	4997045	AT2TE20460	.	+	ATCOPIA59	Copia	LTR	120	short	20	low	1363502	pericentromeric	8098	.	.	.	.	.	.	.
Chr2	4997085	4997142	AT2TE20465	.	+	HELITRONY1A	Helitron	RC	57	tiny	271	high	1363662	pericentromeric	8001	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	4997142	4997163	AT2TE20470	.	+	ATREP5	Helitron	RC	21	tiny	624	high	1363719	pericentromeric	7980	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	4997163	4997464	AT2TE20475	.	+	ATREP5	Helitron	RC	301	short	624	high	1363740	pericentromeric	7679	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	4997479	5001923	AT2TE20480	.	+	ATENSPM3	En-Spm	DNA	4444	medium	98	medium	1364056	pericentromeric	3220	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	5000355	5000421	AT2TE20485	.	+	ATENSPM7	En-Spm	DNA	66	tiny	74	medium	1366932	pericentromeric	4722	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	5001374	5001417	AT2TE20490	.	+	ATENSPM7	En-Spm	DNA	43	tiny	74	medium	1367951	pericentromeric	3726	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	5001923	5002012	AT2TE20495	.	+	ATENSPM3	En-Spm	DNA	89	tiny	98	medium	1368500	pericentromeric	3131	no-RdDM	no-CHH	.	.	.	.	.
Chr2	5003268	5004365	AT2TE20500	.	+	ATREP10D	Helitron	RC	1097	short	1295	high	1369845	pericentromeric	778	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	5003320	5003642	AT2TE20505	.	+	ATREP3	Helitron	RC	322	short	1439	high	1369897	pericentromeric	1501	no-CHH	no-CHH	.	.	.	.	.
Chr2	5004365	5004804	AT2TE20510	.	-	BRODYAGA2	MuDR	DNA	439	short	525	high	1370942	pericentromeric	339	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5004804	5004893	AT2TE20515	.	-	VANDALNX2	MuDR	DNA	89	tiny	37	low	1371381	pericentromeric	250	no-CHH	no-CHH	.	.	.	.	.
Chr2	5005803	5005938	AT2TE20520	.	-	ATHAT1	HAT	DNA	135	short	105	medium	1372380	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	5008304	5009227	AT2TE20530	.	-	ATREP10D	Helitron	RC	923	short	1295	high	1374881	pericentromeric	164	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	5009969	5010068	AT2TE20535	.	-	ATREP2A	Helitron	RC	99	tiny	116	medium	1376546	pericentromeric	723	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	5010068	5010650	AT2TE20540	.	-	ATREP2	Helitron	RC	582	short	164	medium	1376645	pericentromeric	141	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	5010651	5010751	AT2TE20545	.	-	ATREP1	Helitron	RC	100	short	498	high	1377228	pericentromeric	40	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5011149	5011218	AT2TE20550	.	-	ATREP4	Helitron	RC	69	tiny	832	high	1377726	pericentromeric	0	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	5011915	5012225	AT2TE20555	.	+	ATCOPIA58	Copia	LTR	310	short	18	low	1378492	pericentromeric	325	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	5012419	5012680	AT2TE20560	.	+	ATCOPIA43	Copia	LTR	261	short	29	low	1378996	pericentromeric	829	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	5012680	5012704	AT2TE20565	.	+	ATCOPIA43	Copia	LTR	24	tiny	29	low	1379257	pericentromeric	1090	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	5012854	5012967	AT2TE20570	.	-	ATCOPIA94	Copia	LTR	113	short	39	low	1379431	pericentromeric	1264	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	5013128	5013339	AT2TE20575	.	-	ATHILA4D_LTR	Gypsy	LTR	211	short	106	medium	1379705	pericentromeric	1538	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	5013732	5013759	AT2TE20580	.	-	ATHILA4A	Gypsy	LTR	27	tiny	310	high	1380309	pericentromeric	2142	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	5013759	5013821	AT2TE20585	.	-	ATHILA4C	Gypsy	LTR	62	tiny	206	high	1380336	pericentromeric	2169	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	5013821	5015200	AT2TE20590	.	-	ATHILA8B	Gypsy	LTR	1379	short	78	medium	1380398	pericentromeric	2231	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	5015200	5015288	AT2TE20595	.	-	ATHILA7	Gypsy	LTR	88	tiny	134	medium	1381777	pericentromeric	3610	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	5015288	5015339	AT2TE20600	.	-	ATHILA4A	Gypsy	LTR	51	tiny	310	high	1381865	pericentromeric	3698	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	5016961	5017093	AT2TE20605	.	-	ATHILA4C	Gypsy	LTR	132	short	206	high	1383538	pericentromeric	5371	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	5018095	5018193	AT2TE20610	.	+	HELITRONY3	Helitron	RC	99	tiny	1399	high	1384671	pericentromeric	6504	.	.	.	.	.	.	.
Chr2	5018616	5018703	AT2TE20615	.	-	RathE1_cons	.	RathE1_cons	87	tiny	213	high	1385193	pericentromeric	7026	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	5020088	5020876	AT2TE20620	.	-	ATHATN10	HAT	DNA	788	short	48	low	1386665	pericentromeric	8498	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5021454	5021753	AT2TE20625	.	-	HELITRONY2	Helitron	RC	299	short	198	medium	1388031	pericentromeric	9864	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	5021753	5021888	AT2TE20630	.	-	ATDNAI27T9A	MuDR	DNA	135	short	116	medium	1388330	pericentromeric	10163	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	5022876	5023014	AT2TE20635	.	-	VANDAL5A	MuDR	DNA	138	short	56	medium	1389453	pericentromeric	11286	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5023016	5024024	AT2TE20640	.	-	ATHILA4B_LTR	Gypsy	LTR	1008	short	143	medium	1389593	pericentromeric	11426	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	5024024	5026526	AT2TE20645	.	-	ENDOVIR1	Copia	LTR	2502	medium	15	low	1390601	pericentromeric	12434	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	5026831	5028640	AT2TE20650	.	-	ATENSPM9	En-Spm	DNA	1809	short	97	medium	1393408	pericentromeric	15241	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	5028640	5028698	AT2TE20655	.	-	ATENSPM6	En-Spm	DNA	58	tiny	151	medium	1395217	pericentromeric	17050	no-RdDM	no-CHH	.	.	.	.	.
Chr2	5028698	5028769	AT2TE20660	.	-	ATENSPM6	En-Spm	DNA	71	tiny	151	medium	1395275	pericentromeric	17108	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	5029104	5029940	AT2TE20665	.	+	ATGP5	Gypsy	LTR	836	short	86	medium	1395681	pericentromeric	17514	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	5029940	5030005	AT2TE20670	.	+	ATGP5	Gypsy	LTR	65	tiny	86	medium	1396517	pericentromeric	18350	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	5030654	5030857	AT2TE20675	.	-	ATENSPM5	En-Spm	DNA	203	short	111	medium	1397231	pericentromeric	19064	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	5031468	5032435	AT2TE20680	.	-	Unassigned	.	Unassigned	967	short	.	low	1398045	pericentromeric	17517	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	5032580	5033778	AT2TE20685	.	+	ATHILA4	Gypsy	LTR	1198	short	250	high	1399157	pericentromeric	16174	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5035092	5035395	AT2TE20690	.	+	TA11	L1	LINE	303	short	157	medium	1401669	pericentromeric	14557	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr2	5036235	5036602	AT2TE20695	.	+	ATLINE1_5	L1	LINE	367	short	91	medium	1402812	pericentromeric	13350	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	5037034	5037054	AT2TE20700	.	+	ATREP10D	Helitron	RC	20	tiny	1295	high	1403611	pericentromeric	12898	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5037054	5037564	AT2TE20705	.	-	HELITRONY3	Helitron	RC	510	short	1399	high	1403631	pericentromeric	12388	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5037564	5038393	AT2TE20710	.	+	ATREP2	Helitron	RC	829	short	164	medium	1404141	pericentromeric	11559	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5038393	5038421	AT2TE20715	.	+	ATREP11A	Helitron	RC	28	tiny	95	medium	1404970	pericentromeric	11531	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	5038421	5038925	AT2TE20720	.	+	ATLINE1A	L1	LINE	504	short	289	high	1404998	pericentromeric	11027	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	5040946	5040994	AT2TE20730	.	+	ATLANTYS1	Gypsy	LTR	48	tiny	153	medium	1407523	pericentromeric	8958	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5040994	5048412	AT2TE20735	.	+	ATLANTYS1	Gypsy	LTR	7418	long	153	medium	1407571	pericentromeric	1540	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	5041216,5047550,5047550	5041423,5045772,5045873	+,-,-	transcript_id-"95299f2b-08ec-4483-877a-5028215bd675|3",transcript_id-"45ed974c-9455-4dff-8862-87b3607b7a13|23",transcript_id-"bd4a6edf-6b5e-41ff-a10d-0d0696b3c604|70"
Chr2	5044473	5044524	AT2TE20740	.	+	ATLANTYS1	Gypsy	LTR	51	tiny	153	medium	1411050	pericentromeric	5428	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	5048412	5048487	AT2TE20750	.	+	HELITRONY3	Helitron	RC	75	tiny	1399	high	1414989	pericentromeric	1465	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5048487	5049699	AT2TE20755	.	-	ATREP10B	Helitron	RC	1212	short	491	high	1415064	pericentromeric	253	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	5049722	5049536	-	transcript_id-"09596cc9-a852-48cc-bc15-41ccc665a8ee|3"
Chr2	5053731	5054374	AT2TE20770	.	+	BRODYAGA2	MuDR	DNA	643	short	525	high	1420308	pericentromeric	1150	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	5055851	5055871	AT2TE20775	.	-	ATREP11	Helitron	RC	20	tiny	841	high	1422428	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	5055871	5055929	AT2TE20780	.	-	BRODYAGA1A	MuDR	DNA	58	tiny	586	high	1422448	pericentromeric	0	no-CHH	no-RdDM	.	.	.	.	.
Chr2	5055929	5055965	AT2TE20785	.	+	ATREP19	.	DNA	36	tiny	189	medium	1422506	pericentromeric	57	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	5055965	5056448	AT2TE20790	.	+	ATREP10B	Helitron	RC	483	short	491	high	1422542	pericentromeric	93	no-CHH	no-CHH	.	.	.	.	.
Chr2	5056449	5056725	AT2TE20795	.	+	ATMU10	MuDR	DNA	277	short	87	medium	1423025	pericentromeric	576	.	.	.	.	.	.	.
Chr2	5056732	5056788	AT2TE20800	.	-	BRODYAGA1	MuDR	DNA	56	tiny	251	high	1423309	pericentromeric	860	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	5056788	5056994	AT2TE20805	.	-	ATMU10	MuDR	DNA	206	short	87	medium	1423365	pericentromeric	916	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	5057719	5059782	AT2TE20810	.	-	ATGP1	Gypsy	LTR	2063	medium	144	medium	1424296	pericentromeric	1847	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	5060428	5062129	AT2TE20815	.	-	ATLINE1A	L1	LINE	1701	short	289	high	1427005	pericentromeric	4556	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	5062228	5062311	AT2TE20820	.	-	ATMUN1	MuDR	DNA	83	tiny	107	medium	1428805	pericentromeric	6178	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	5062419	5062469	AT2TE20825	.	-	ATCOPIA11	Copia	LTR	50	tiny	26	low	1428996	pericentromeric	6020	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr2	5062469	5062543	AT2TE20830	.	-	ATCOPIA38	Copia	LTR	74	tiny	9	low	1429046	pericentromeric	5946	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	5062543	5067149	AT2TE20835	.	-	ATCOPIA1	Copia	LTR	4606	medium	11	low	1429120	pericentromeric	1340	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	5067149	5067411	AT2TE20840	.	-	ATCOPIA16	Copia	LTR	262	short	12	low	1433726	pericentromeric	1078	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	5068818	5068949	AT2TE20845	.	-	HELITRONY3	Helitron	RC	131	short	1399	high	1435395	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	5068949	5069697	AT2TE20850	.	-	BRODYAGA2	MuDR	DNA	748	short	525	high	1435526	pericentromeric	96	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	5072392	5072501	AT2TE20860	.	-	ATCOPIA87	Copia	LTR	109	short	19	low	1438969	pericentromeric	165	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	5073061	5073436	AT2TE20865	.	+	HELITRONY1D	Helitron	RC	375	short	756	high	1439638	pericentromeric	834	no-CHH	no-CHH	.	.	.	.	.
Chr2	5073846	5078418	AT2TE20870	.	+	ATCOPIA66	Copia	LTR	4572	medium	20	low	1440423	pericentromeric	1619	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	5079626	5080809	AT2TE20875	.	-	ATREP5	Helitron	RC	1183	short	624	high	1446203	pericentromeric	7399	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	5079914	5080572	AT2TE20880	.	+	TNAT1A	.	DNA	658	short	162	medium	1446491	pericentromeric	7687	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5080809	5081390	AT2TE20885	.	-	HELITRONY1A	Helitron	RC	581	short	271	high	1447386	pericentromeric	8582	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5081405	5081652	AT2TE20890	.	+	ATLINE1_5	L1	LINE	247	short	91	medium	1447982	pericentromeric	9178	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	5082815	5083204	AT2TE20895	.	+	ATLANTYS3	Gypsy	LTR	389	short	142	medium	1449392	pericentromeric	10588	no-RdDM	no-CHH	.	.	.	.	.
Chr2	5084035	5084645	AT2TE20900	.	-	BOMZH2	MuDR	DNA	610	short	47	low	1450612	pericentromeric	11808	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5084963	5090182	AT2TE20905	.	+	ATHILA3	Gypsy	LTR	5219	long	243	high	1451540	pericentromeric	12736	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	5090213	5090270	AT2TE20910	.	+	ATHILA0_I	Gypsy	LTR	57	tiny	138	medium	1456790	pericentromeric	17986	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	5090270	5090465	AT2TE20915	.	+	ATHILA0_I	Gypsy	LTR	195	short	138	medium	1456847	pericentromeric	18043	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	5090816	5090852	AT2TE20920	.	+	ATHILA	Gypsy	LTR	36	tiny	198	medium	1457393	pericentromeric	18589	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	5090852	5091911	AT2TE20925	.	+	ATHILA5	Gypsy	LTR	1059	short	131	medium	1457429	pericentromeric	18625	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	5091911	5091962	AT2TE20930	.	+	ATHILA5	Gypsy	LTR	51	tiny	131	medium	1458488	pericentromeric	19684	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	5091981	5092512	AT2TE20935	.	+	ATHILA5	Gypsy	LTR	531	short	131	medium	1458558	pericentromeric	19754	no-RdDM	no-CHH	.	.	.	.	.
Chr2	5092512	5097934	AT2TE20940	.	+	ATHILA3	Gypsy	LTR	5422	long	243	high	1459089	pericentromeric	16946	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	5092891,5092891,5092905	5093474,5094985,5093708	+,+,+	transcript_id-"314016b5-c0e2-4cf9-82d8-72453790b0dd|159",transcript_id-"042fa71f-d64f-4c6e-b29d-43eeb9e78a71|62",transcript_id-"00e2dee0-f6c6-4551-a96d-07a83ffbd9fe|20"
Chr2	5095494	5097553	AT2TE20945	.	-	ATGP2N	Gypsy	LTR	2059	medium	54	medium	1462071	pericentromeric	17327	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	5098828	5099023	AT2TE20950	.	-	ATMU2	MuDR	DNA	195	short	64	medium	1465405	pericentromeric	15857	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	5099032	5099840	AT2TE20955	.	-	ATREP18	.	DNA	808	short	391	high	1465609	pericentromeric	15040	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	5100092	5111544	AT2TE20960	.	+	ATLANTYS1	Gypsy	LTR	11452	long	153	medium	1466669	pericentromeric	3336	no-RdDM	no-RdDM	ExpressedAndAnnotated	5110688,5110688,5110688,5111249	5104417,5104419,5104430,5111453	-,-,-,+	transcript_id-"bba12801-87bb-4c92-ba5f-2b08e189d6d2|13",transcript_id-"27616a21-f40e-42de-8b7f-f897485631be|3",transcript_id-"8ba8812b-55b0-4727-a501-5667cffa6e7a|3",transcript_id-"c6c60f93-cddb-4c92-bb14-7c1024520bde|3"
Chr2	5105900	5110242	AT2TE20965	.	+	ATGP2N	Gypsy	LTR	4342	medium	54	medium	1472477	pericentromeric	4638	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	5111839	5112091	AT2TE20970	.	+	BRODYAGA2	MuDR	DNA	252	short	525	high	1478416	pericentromeric	2789	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5112091	5114332	AT2TE20975	.	-	HELITRONY1D	Helitron	RC	2241	medium	756	high	1478668	pericentromeric	548	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	5114332	5114442	AT2TE20980	.	-	HELITRONY1D	Helitron	RC	110	short	756	high	1480909	pericentromeric	438	no-CHH	RDR6-RdDM	.	.	.	.	.
Chr2	5114442	5114897	AT2TE20985	.	+	ATREP3	Helitron	RC	455	short	1439	high	1481019	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	5115252	5116129	AT2TE20990	.	+	ATENSPM9	En-Spm	DNA	877	short	97	medium	1481829	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	5118969	5119169	AT2TE21000	.	-	ARNOLDY1	MuDR	DNA	200	short	237	high	1485546	pericentromeric	483	no-CHH	no-CHH	.	.	.	.	.
Chr2	5119169	5119427	AT2TE21005	.	-	ARNOLDY2	MuDR	DNA	258	short	288	high	1485746	pericentromeric	683	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	5119427	5120962	AT2TE21010	.	-	ARNOLDY2	MuDR	DNA	1535	short	288	high	1486004	pericentromeric	929	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5120964	5121093	AT2TE21015	.	+	ATREP15	Helitron	RC	129	short	1003	high	1487541	pericentromeric	798	RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr2	5122698	5123402	AT2TE21020	.	+	ATLINE1_6	L1	LINE	704	short	129	medium	1489275	chromoarm	630	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	5123402	5127170	AT2TE21025	.	-	ATHILA	Gypsy	LTR	3768	medium	198	medium	1489979	chromoarm	1334	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	5126685	5126057	-	transcript_id-"3b505091-2297-4c76-8a87-adabb9790fa9|9"
Chr2	5127170	5127954	AT2TE21030	.	-	ATHILA6B	Gypsy	LTR	784	short	134	medium	1493747	chromoarm	5102	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr2	5127478	5127696	AT2TE21035	.	-	ATHILA5	Gypsy	LTR	218	short	131	medium	1494055	chromoarm	5410	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr2	5127696	5127739	AT2TE21040	.	-	ATHILA	Gypsy	LTR	43	tiny	198	medium	1494273	chromoarm	5628	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	5127954	5132346	AT2TE21045	.	-	ATHILA2	Gypsy	LTR	4392	medium	413	high	1494531	chromoarm	5886	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	5132375	5133590	AT2TE21050	.	+	Unassigned	.	Unassigned	1215	short	.	low	1498952	chromoarm	10307	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	5133953	5140757	AT2TE21055	.	+	ATHILA0_I	Gypsy	LTR	6804	long	138	medium	1500530	chromoarm	11885	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	5138593	5139791	AT2TE21060	.	+	ATHILA4B_LTR	Gypsy	LTR	1198	short	143	medium	1505170	chromoarm	16525	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	5140759	5145643	AT2TE21065	.	+	ATHILA4A	Gypsy	LTR	4884	medium	310	high	1507336	chromoarm	18691	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	5141935	5142058	AT2TE21070	.	+	ATHILA0_I	Gypsy	LTR	123	short	138	medium	1508512	chromoarm	19867	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	5142058	5142292	AT2TE21075	.	+	ATHILA4C	Gypsy	LTR	234	short	206	high	1508635	chromoarm	19990	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	5142292	5142775	AT2TE21080	.	+	ATHILA4A	Gypsy	LTR	483	short	310	high	1508869	chromoarm	20224	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr2	5145643	5146995	AT2TE21090	.	+	ATHILA0_I	Gypsy	LTR	1352	short	138	medium	1512220	chromoarm	20183	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	5146995	5147185	AT2TE21095	.	+	ATMU2	MuDR	DNA	190	short	64	medium	1513572	chromoarm	19993	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	5147259	5148282	AT2TE21100	.	+	ATENSPM5	En-Spm	DNA	1023	short	111	medium	1513836	chromoarm	18896	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	5147716	5150357	+	transcript_id-"4740c2b6-7280-450b-8446-36d85188dc19|24"
Chr2	5148282	5153752	AT2TE21105	.	+	ATHILA0_I	Gypsy	LTR	5470	long	138	medium	1514859	chromoarm	13426	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	5147716,5148553,5150221	5150357,5150410,5152827	+,+,+	transcript_id-"4740c2b6-7280-450b-8446-36d85188dc19|24",transcript_id-"47092e6a-a893-46b6-91e3-08826d269d17|4",transcript_id-"81bec9cf-97f2-4c59-bf95-8ab87d47a053|8"
Chr2	5149571	5151199	AT2TE21110	.	+	ATHILA8B	Gypsy	LTR	1628	short	78	medium	1516148	chromoarm	15979	no-RdDM	no-CHH	ExpressedAndAnnotated	5147716,5148553,5150221	5150357,5150410,5152827	+,+,+	transcript_id-"4740c2b6-7280-450b-8446-36d85188dc19|24",transcript_id-"47092e6a-a893-46b6-91e3-08826d269d17|4",transcript_id-"81bec9cf-97f2-4c59-bf95-8ab87d47a053|8"
Chr2	5153752	5153824	AT2TE21120	.	+	ATHILA5	Gypsy	LTR	72	tiny	131	medium	1520329	chromoarm	13354	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5154629	5158660	AT2TE21125	.	-	ATLINE1A	L1	LINE	4031	medium	289	high	1521206	chromoarm	8518	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	5158660	5158746	AT2TE21130	.	-	ATLINE1_4	L1	LINE	86	tiny	102	medium	1525237	chromoarm	8432	no-CHH	no-CHH	.	.	.	.	.
Chr2	5160338	5160886	AT2TE21135	.	+	ATGP1	Gypsy	LTR	548	short	144	medium	1526915	chromoarm	6292	no-RdDM	no-CHH	.	.	.	.	.
Chr2	5160886	5160942	AT2TE21140	.	+	ATDNA12T3_2	.	DNA	56	tiny	660	high	1527463	chromoarm	6236	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	5160942	5161356	AT2TE21145	.	+	ATDNA12T3_2	.	DNA	414	short	660	high	1527519	chromoarm	5822	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5161356	5161420	AT2TE21150	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	1527933	chromoarm	5758	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	5161732	5163010	AT2TE21155	.	-	ATHILA4	Gypsy	LTR	1278	short	250	high	1528309	chromoarm	4168	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	5163353	5163525	AT2TE21160	.	+	RP1_AT	.	DNA	172	short	87	medium	1529930	chromoarm	3653	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5163742	5163835	AT2TE21165	.	-	ATREP10B	Helitron	RC	93	tiny	491	high	1530319	chromoarm	3343	no-CHH	no-CHH	.	.	.	.	.
Chr2	5163835	5164452	AT2TE21170	.	-	ATREP3	Helitron	RC	617	short	1439	high	1530412	chromoarm	2726	no-CHH	no-CHH	.	.	.	.	.
Chr2	5164830	5165453	AT2TE21175	.	+	BRODYAGA1	MuDR	DNA	623	short	251	high	1531407	chromoarm	1725	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	5165762	5166239	AT2TE21180	.	+	ATLINE1_4	L1	LINE	477	short	102	medium	1532339	chromoarm	939	no-CHH	no-CHH	.	.	.	.	.
Chr2	5166435	5166667	AT2TE21185	.	+	BRODYAGA1A	MuDR	DNA	232	short	586	high	1533012	chromoarm	511	no-CHH	no-CHH	.	.	.	.	.
Chr2	5169847	5170019	AT2TE21195	.	-	ATREP11	Helitron	RC	172	short	841	high	1536424	chromoarm	825	no-CHH	no-CHH	.	.	.	.	.
Chr2	5170019	5171528	AT2TE21200	.	-	ATREP15	Helitron	RC	1509	short	1003	high	1536596	chromoarm	997	no-CHH	no-CHH	.	.	.	.	.
Chr2	5171528	5171551	AT2TE21205	.	+	HELITRONY1C	Helitron	RC	23	tiny	120	medium	1538105	chromoarm	2506	no-CHH	no-CHH	.	.	.	.	.
Chr2	5171551	5171760	AT2TE21210	.	+	HELITRONY1B	Helitron	RC	209	short	414	high	1538128	chromoarm	2529	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	5171760	5171783	AT2TE21215	.	+	HELITRONY1A	Helitron	RC	23	tiny	271	high	1538337	chromoarm	2738	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	5173569	5173789	AT2TE21220	.	+	ATLINE1_5	L1	LINE	220	short	91	medium	1540146	chromoarm	4547	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	5173789	5176138	AT2TE21225	.	+	ATLINE1_4	L1	LINE	2349	medium	102	medium	1540366	chromoarm	4767	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	5176138	5176230	AT2TE21230	.	+	TA11	L1	LINE	92	tiny	157	medium	1542715	chromoarm	7116	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	5176230	5176698	AT2TE21235	.	+	ATLINE1A	L1	LINE	468	short	289	high	1542807	chromoarm	7208	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	5177554	5177893	AT2TE21240	.	-	ATDNA12T3_2	.	DNA	339	short	660	high	1544131	chromoarm	8532	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	5178326	5178595	AT2TE21245	.	+	ATCOPIA34	Copia	LTR	269	short	16	low	1544903	chromoarm	9304	no-RdDM	no-CHH	.	.	.	.	.
Chr2	5178595	5179606	AT2TE21250	.	+	VANDAL3	MuDR	DNA	1011	short	177	medium	1545172	chromoarm	9573	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5179736	5180131	AT2TE21255	.	+	ATREP5	Helitron	RC	395	short	624	high	1546313	chromoarm	10714	no-CHH	no-CHH	.	.	.	.	.
Chr2	5182765	5185651	AT2TE21265	.	+	ATLINE1_5	L1	LINE	2886	medium	91	medium	1549342	chromoarm	13743	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	5186486	5186969	AT2TE21270	.	-	ATHILA8A	Gypsy	LTR	483	short	97	medium	1553063	chromoarm	17464	no-CHH	no-CHH	.	.	.	.	.
Chr2	5186969	5187011	AT2TE21275	.	-	ATHILA6A	Gypsy	LTR	42	tiny	247	high	1553546	chromoarm	17947	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	5187014	5188726	AT2TE21280	.	-	ATHILA2	Gypsy	LTR	1712	short	413	high	1553591	chromoarm	17992	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	5188726	5188756	AT2TE21285	.	-	ROMANIAT5	Copia	LTR	30	tiny	49	low	1555303	chromoarm	19704	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr2	5189483	5189797	AT2TE21290	.	-	BRODYAGA1A	MuDR	DNA	314	short	586	high	1556060	chromoarm	20461	no-CHH	no-CHH	.	.	.	.	.
Chr2	5190751	5213747	AT2TE21295	.	-	VANDAL3	MuDR	DNA	22996	long	177	medium	1557328	chromoarm	21729	no-RdDM	no-RdDM	ExpressedAndAnnotated	5196340,5196340,5196570,5197731,5197862,5197862,5206149,5207823,5208395,5208405	5196954,5197033,5196961,5197194,5197231,5197235,5206852,5207128,5209588,5209583	+,+,+,-,-,-,+,-,+,+	transcript_id-"cc5bd873-ddcc-42fc-8b21-9fa758a9d02b|3",transcript_id-"d4aca440-1969-461d-87c4-583902c41407|4",transcript_id-"9dffc428-9e6b-487d-bb86-66fbc4684193|5",transcript_id-"2696ed4e-c45d-4101-b72a-2985f862f94e|7",transcript_id-"6662a89d-5cb6-4e85-8988-1347133dec77|40",transcript_id-"7cad191e-07c9-4fef-b31e-7c30f92969b6|10",transcript_id-"f4064373-162e-430b-90aa-d1601ddbf5bb|3",transcript_id-"3b268848-e9d7-4162-9d24-5d40e3b8d690|52",transcript_id-"ff88f71a-adc0-4f10-a187-7eb3854603d2|6",transcript_id-"2ccfd0f0-7cd6-48fb-a87a-667ee7baf61e|61"
Chr2	5213747	5213881	AT2TE21300	.	-	VANDAL3	MuDR	DNA	134	short	177	medium	1580324	chromoarm	44725	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	5213881	5214449	AT2TE21305	.	-	ATREP10D	Helitron	RC	568	short	1295	high	1580458	chromoarm	44859	no-CHH	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	5215098	5215319	AT2TE21310	.	-	HELITRON4	Helitron	RC	221	short	199	medium	1581675	chromoarm	46076	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	5215335	5215469	AT2TE21315	.	-	ATTIRTA1	Tc1	DNA	134	short	95	medium	1581912	chromoarm	46313	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	5217208	5217372	AT2TE21320	.	-	ATENSPM10	En-Spm	DNA	164	short	81	medium	1583785	chromoarm	48186	no-RdDM	no-CHH	.	.	.	.	.
Chr2	5217834	5218010	AT2TE21325	.	+	LIMPET1	MuDR	DNA	176	short	116	medium	1584411	chromoarm	48812	RDR6-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	5218107	5218240	AT2TE21330	.	-	ATENSPM10	En-Spm	DNA	133	short	81	medium	1584684	chromoarm	49085	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	5218774	5218996	AT2TE21335	.	-	AT9MU1	MuDR	DNA	222	short	10	low	1585351	chromoarm	49752	no-RdDM	no-CHH	.	.	.	.	.
Chr2	5219463	5219816	AT2TE21340	.	-	ATMU1	MuDR	DNA	353	short	59	medium	1586040	chromoarm	50441	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	5220789	5227189	AT2TE21345	.	-	ATGP1	Gypsy	LTR	6400	long	144	medium	1587366	chromoarm	51767	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	5227189	5228123	AT2TE21350	.	-	ATGP1	Gypsy	LTR	934	short	144	medium	1593766	chromoarm	58167	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	5228124	5229155	AT2TE21355	.	-	ATGP1	Gypsy	LTR	1032	short	144	medium	1594700	chromoarm	59101	.	.	.	.	.	.	.
Chr2	5229155	5237978	AT2TE21360	.	-	ATGP1	Gypsy	LTR	8823	long	144	medium	1595732	chromoarm	51432	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	5237983	5238319	AT2TE21365	.	-	ATGP1	Gypsy	LTR	336	short	144	medium	1604560	chromoarm	51091	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	5238550	5238652	AT2TE21370	.	-	ATMUNX1	MuDR	DNA	102	short	155	medium	1605127	chromoarm	50758	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	5238955	5239616	AT2TE21375	.	+	HELITRONY1B	Helitron	RC	661	short	414	high	1605532	chromoarm	49794	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	5239616	5245609	AT2TE21380	.	-	ATLINE1_6	L1	LINE	5993	long	129	medium	1606193	chromoarm	43801	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	5245976	5246712	AT2TE21385	.	-	ATREP15	Helitron	RC	736	short	1003	high	1612553	chromoarm	42698	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	5246965	5247443	AT2TE21390	.	+	ATREP3	Helitron	RC	478	short	1439	high	1613542	chromoarm	41967	no-CHH	no-CHH	.	.	.	.	.
Chr2	5247443	5248679	AT2TE21395	.	+	ATHILA4A	Gypsy	LTR	1236	short	310	high	1614020	chromoarm	40731	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5249271	5249547	AT2TE21400	.	+	ATHILA4	Gypsy	LTR	276	short	250	high	1615848	chromoarm	39863	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	5249561	5249723	AT2TE21405	.	+	ATHILA6B	Gypsy	LTR	162	short	134	medium	1616138	chromoarm	39687	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	5249723	5250077	AT2TE21410	.	-	ATHILA4B_LTR	Gypsy	LTR	354	short	143	medium	1616300	chromoarm	39333	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5250079	5250332	AT2TE21415	.	+	ATHILA2	Gypsy	LTR	253	short	413	high	1616656	chromoarm	39078	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	5250332	5253680	AT2TE21420	.	+	ATHILA2	Gypsy	LTR	3348	medium	413	high	1616909	chromoarm	35730	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	5251887	5251980	AT2TE21425	.	+	ATHILA2	Gypsy	LTR	93	tiny	413	high	1618464	chromoarm	37430	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	5253680	5253737	AT2TE21430	.	+	ATHILA2	Gypsy	LTR	57	tiny	413	high	1620257	chromoarm	35673	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5253737	5253784	AT2TE21435	.	+	ATHILA7	Gypsy	LTR	47	tiny	134	medium	1620314	chromoarm	35626	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	5253784	5258058	AT2TE21440	.	+	ATHILA6B	Gypsy	LTR	4274	medium	134	medium	1620361	chromoarm	31352	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	5258059	5259426	AT2TE21445	.	+	ATHILA6A	Gypsy	LTR	1368	short	247	high	1624635	chromoarm	29984	.	.	.	.	.	.	.
Chr2	5259431	5262437	AT2TE21450	.	+	ATHILA2	Gypsy	LTR	3006	medium	413	high	1626008	chromoarm	26973	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	5262444	5264751	AT2TE21455	.	+	ATHILA6B	Gypsy	LTR	2307	medium	134	medium	1629021	chromoarm	24659	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	5263613	5264260	AT2TE21460	.	+	ATGP1	Gypsy	LTR	647	short	144	medium	1630190	chromoarm	25150	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	5264752	5264791	AT2TE21465	.	+	ATHILA6B	Gypsy	LTR	40	tiny	134	medium	1631328	chromoarm	24619	.	.	LowExpressed	.	.	.	.
Chr2	5264792	5265237	AT2TE21470	.	+	ATHILA6A	Gypsy	LTR	446	short	247	high	1631368	chromoarm	24173	.	.	LowExpressed	.	.	.	.
Chr2	5265238	5266185	AT2TE21475	.	+	ATHILA2	Gypsy	LTR	948	short	413	high	1631814	chromoarm	23225	.	.	LowExpressed	.	.	.	.
Chr2	5266199	5269203	AT2TE21480	.	+	ATHILA2	Gypsy	LTR	3004	medium	413	high	1632776	chromoarm	20207	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	5269209	5271410	AT2TE21485	.	+	ATHILA6B	Gypsy	LTR	2201	medium	134	medium	1635786	chromoarm	18000	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	5270335	5270985	AT2TE21490	.	+	ATGP1	Gypsy	LTR	650	short	144	medium	1636912	chromoarm	18425	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	5271411	5271516	AT2TE21495	.	+	ATHILA6B	Gypsy	LTR	106	short	134	medium	1637987	chromoarm	17894	.	.	LowExpressed	.	.	.	.
Chr2	5271517	5271962	AT2TE21500	.	+	ATHILA6A	Gypsy	LTR	446	short	247	high	1638093	chromoarm	17448	.	.	LowExpressed	.	.	.	.
Chr2	5271962	5275944	AT2TE21505	.	+	ATHILA2	Gypsy	LTR	3982	medium	413	high	1638539	chromoarm	13466	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	5275944	5280409	AT2TE21510	.	+	ATHILA7	Gypsy	LTR	4465	medium	134	medium	1642521	chromoarm	9001	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	5277052	5278229	AT2TE21515	.	+	ATGP1	Gypsy	LTR	1177	short	144	medium	1643629	chromoarm	11181	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	5278230	5278270	AT2TE21520	.	+	ATHILA4C	Gypsy	LTR	40	tiny	206	high	1644807	chromoarm	11140	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	5278270	5279897	AT2TE21525	.	+	ATHILA	Gypsy	LTR	1627	short	198	medium	1644847	chromoarm	9513	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	5280409	5289362	AT2TE21530	.	-	ATLANTYS2	Gypsy	LTR	8953	long	179	medium	1646986	chromoarm	48	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	5290261	5288998	-	transcript_id-"485c653e-97e9-4fb3-abc7-7f0c8eae26da|7"
Chr2	5282587	5284512	AT2TE21535	.	-	ATHILA4A	Gypsy	LTR	1925	short	310	high	1649164	chromoarm	4898	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	5284512	5284538	AT2TE21540	.	-	ATHILA4A	Gypsy	LTR	26	tiny	310	high	1651089	chromoarm	4872	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5284601	5285513	AT2TE21545	.	-	ATHILA4C	Gypsy	LTR	912	short	206	high	1651178	chromoarm	3897	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	5285513	5285585	AT2TE21550	.	-	ATHILA4A	Gypsy	LTR	72	tiny	310	high	1652090	chromoarm	3825	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	5285585	5286908	AT2TE21555	.	-	ATHILA4	Gypsy	LTR	1323	short	250	high	1652162	chromoarm	2502	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5291235	5291312	AT2TE21570	.	+	ATMU2	MuDR	DNA	77	tiny	64	medium	1657812	chromoarm	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	5291312	5291494	AT2TE21575	.	+	ATENSPM1A	En-Spm	DNA	182	short	77	medium	1657889	chromoarm	0	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	5291556	5291763	AT2TE21580	.	+	ATGP10	Gypsy	LTR	207	short	165	medium	1658133	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	5291918	5292586	AT2TE21585	.	-	HELITRONY3	Helitron	RC	668	short	1399	high	1658495	chromoarm	36	no-CHH	no-CHH	.	.	.	.	.
Chr2	5292586	5292789	AT2TE21590	.	-	BOMZH2	MuDR	DNA	203	short	47	low	1659163	chromoarm	704	no-CHH	no-CHH	.	.	.	.	.
Chr2	5296681	5296775	AT2TE21600	.	+	ATREP13	Helitron	RC	94	tiny	106	medium	1663258	chromoarm	99	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	5297230	5306835	AT2TE21605	.	-	ATLANTYS2	Gypsy	LTR	9605	long	179	medium	1663807	chromoarm	648	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	5306843	5312863	AT2TE21610	.	+	ATGP2	Gypsy	LTR	6020	long	48	low	1673420	chromoarm	2174	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	5313189	5313260	AT2TE21615	.	+	ATREP10D	Helitron	RC	71	tiny	1295	high	1679766	chromoarm	1777	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	5313260	5314936	AT2TE21620	.	+	ATREP10D	Helitron	RC	1676	short	1295	high	1679837	chromoarm	101	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	5314936	5315036	AT2TE21625	.	+	ATREP3	Helitron	RC	100	short	1439	high	1681513	chromoarm	1	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	5316382	5316404	AT2TE21630	.	-	ATSINE4	.	SINE	22	tiny	98	medium	1682959	chromoarm	341	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr2	5316404	5316774	AT2TE21635	.	-	ATSINE4	.	SINE	370	short	98	medium	1682981	chromoarm	363	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5319340	5319817	AT2TE21645	.	-	ATLINE1A	L1	LINE	477	short	289	high	1685917	chromoarm	251	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	5319817	5320036	AT2TE21650	.	-	HELITRONY1D	Helitron	RC	219	short	756	high	1686394	chromoarm	728	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	5322761	5323132	AT2TE21660	.	+	ATDNA12T3_2	.	DNA	371	short	660	high	1689338	chromoarm	0	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	5325566	5326737	AT2TE21670	.	-	ATENSPM6	En-Spm	DNA	1171	short	151	medium	1692143	chromoarm	1942	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	5327027	5327059	AT2TE21675	.	+	ATHILA4C	Gypsy	LTR	32	tiny	206	high	1693604	chromoarm	3403	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr2	5327069	5329572	AT2TE21680	.	+	ATHILA4A	Gypsy	LTR	2503	medium	310	high	1693646	chromoarm	3445	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	5329042	5329073	AT2TE21685	.	+	ATHILA4C	Gypsy	LTR	31	tiny	206	high	1695619	chromoarm	5418	no-RdDM	no-CHH	.	.	.	.	.
Chr2	5329073	5329208	AT2TE21690	.	+	ATHILA4C	Gypsy	LTR	135	short	206	high	1695650	chromoarm	5449	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	5329577	5330194	AT2TE21695	.	+	ATGP1	Gypsy	LTR	617	short	144	medium	1696154	chromoarm	5953	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	5330886	5331407	AT2TE21700	.	+	ATGP2	Gypsy	LTR	521	short	48	low	1697463	chromoarm	6457	no-RdDM	no-RdDM	ExpressedAndAnnotated	5330725	5331259	+	transcript_id-"901746d1-c088-411e-b93d-0f2002144c27|3"
Chr2	5331407	5337817	AT2TE21705	.	+	ATGP1	Gypsy	LTR	6410	long	144	medium	1697984	chromoarm	47	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	5338032	5346285	AT2TE21710	.	-	ATENSPM2	En-Spm	DNA	8253	long	114	medium	1704609	chromoarm	3	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	5339737,5342353,5343349,5345798,5345803,5345803	5338611,5341787,5341888,5341899,5345421,5345483	-,-,-,-,-,-	transcript_id-"ea9addfd-3205-4925-9dc7-0adeedcaf308|6",transcript_id-"22b12e97-3d53-4790-8866-ec5377c55804|4",transcript_id-"b2059dcc-d04a-430e-a73c-aef024b5101f|4",transcript_id-"5565bcb1-fcc3-4e07-96ea-c672da16f3c8|6",transcript_id-"32afafbb-f7f9-41cf-9af9-b807bb994f56|7",transcript_id-"52ea1dd0-399d-408b-884c-45ddcf28e409|4"
Chr2	5346374	5347126	AT2TE21715	.	+	ATHILA4A	Gypsy	LTR	752	short	310	high	1712951	chromoarm	8345	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	5347126	5348175	AT2TE21720	.	+	HELITRONY1D	Helitron	RC	1049	short	756	high	1713703	chromoarm	9097	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5348175	5348586	AT2TE21725	.	+	ATHILA4A	Gypsy	LTR	411	short	310	high	1714752	chromoarm	10146	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5348588	5353710	AT2TE21730	.	-	ATHILA3	Gypsy	LTR	5122	long	243	high	1715165	chromoarm	10559	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	5352837	5352865	AT2TE21735	.	-	ATHILA3	Gypsy	LTR	28	tiny	243	high	1719414	chromoarm	14808	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	5353172	5353224	AT2TE21740	.	-	ATHILA3	Gypsy	LTR	52	tiny	243	high	1719749	chromoarm	15143	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr2	5353713	5362152	AT2TE21745	.	-	ATHILA4C	Gypsy	LTR	8439	long	206	high	1720290	chromoarm	15684	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	5362152	5365114	AT2TE21750	.	+	ATHILA4A	Gypsy	LTR	2962	medium	310	high	1728729	chromoarm	24123	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	5362753	5364364	AT2TE21755	.	-	ATHILA0_I	Gypsy	LTR	1611	short	138	medium	1729330	chromoarm	24724	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	5365115	5381127	AT2TE21760	.	-	ATLANTYS1	Gypsy	LTR	16012	long	153	medium	1731692	chromoarm	9078	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	5365646,5365710,5365976,5368416,5368674,5377571	5365206,5367978,5368010,5371212,5371212,5378332	-,+,+,+,+,+	transcript_id-"c252d442-af1b-4870-96b8-0c6b76d24517|5",transcript_id-"f7dfd802-cfd9-488b-b738-8b145fbc6c29|4",transcript_id-"12ac9b31-9aff-4b38-9374-91325ca7be63|4",transcript_id-"8455555e-2864-4911-9420-03e3ed78cf7c|3",transcript_id-"860362ff-ad19-49cc-959f-d74df24cfee2|11",transcript_id-"6015ddb8-4d6f-4ff8-8f77-05a746852142|17"
Chr2	5367814	5377537	AT2TE21765	.	-	ATLANTYS1	Gypsy	LTR	9723	long	153	medium	1734391	chromoarm	12668	no-RdDM	no-RdDM	ExpressedAndAnnotated	5365710,5365976,5368416,5368674	5367978,5368010,5371212,5371212	+,+,+,+	transcript_id-"f7dfd802-cfd9-488b-b738-8b145fbc6c29|4",transcript_id-"12ac9b31-9aff-4b38-9374-91325ca7be63|4",transcript_id-"8455555e-2864-4911-9420-03e3ed78cf7c|3",transcript_id-"860362ff-ad19-49cc-959f-d74df24cfee2|11"
Chr2	5377150	5377170	AT2TE21770	.	-	ATLANTYS1	Gypsy	LTR	21	tiny	153	medium	1743726	chromoarm	13035	.	.	.	.	.	.	.
Chr2	5381127	5381869	AT2TE21790	.	-	ATLANTYS3	Gypsy	LTR	742	short	142	medium	1747704	chromoarm	8336	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	5381891	5383073	AT2TE21795	.	-	ATLANTYS2	Gypsy	LTR	1182	short	179	medium	1748468	chromoarm	7132	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	5383073	5383093	AT2TE21800	.	-	ATLANTYS1	Gypsy	LTR	20	tiny	153	medium	1749650	chromoarm	7112	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr2	5383093	5385098	AT2TE21805	.	-	ATLANTYS3	Gypsy	LTR	2005	medium	142	medium	1749670	chromoarm	5107	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	5386986	5387018	AT2TE21810	.	+	ATLINE1_5	L1	LINE	32	tiny	91	medium	1753563	chromoarm	3187	no-RdDM	no-CHH	.	.	.	.	.
Chr2	5387018	5388592	AT2TE21815	.	+	ATLINE1_4	L1	LINE	1574	short	102	medium	1753595	chromoarm	1613	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	5388592	5388865	AT2TE21820	.	+	ATLINE1_5	L1	LINE	273	short	91	medium	1755169	chromoarm	1340	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	5393540	5393576	AT2TE21840	.	+	HELITRONY3	Helitron	RC	36	tiny	1399	high	1760117	chromoarm	1776	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	5393576	5394399	AT2TE21845	.	+	BRODYAGA1A	MuDR	DNA	823	short	586	high	1760153	chromoarm	1812	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5394399	5394690	AT2TE21850	.	+	BRODYAGA1A	MuDR	DNA	291	short	586	high	1760976	chromoarm	2635	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5394709	5399649	AT2TE21855	.	+	ATCOPIA27	Copia	LTR	4940	medium	19	low	1761286	chromoarm	2945	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5401540	5402003	AT2TE21860	.	+	HELITRONY2	Helitron	RC	463	short	198	medium	1768117	chromoarm	9776	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	5403087	5403912	AT2TE21865	.	-	ATREP3	Helitron	RC	825	short	1439	high	1769664	chromoarm	11323	PolIV-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	5403920	5404753	AT2TE21870	.	-	HELITRON1	Helitron	RC	833	short	130	medium	1770497	chromoarm	11137	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	5406452	5406719	AT2TE21875	.	-	ATREP10D	Helitron	RC	267	short	1295	high	1773029	chromoarm	9171	no-CHH	no-CHH	.	.	.	.	.
Chr2	5406719	5407889	AT2TE21880	.	-	HELITRONY1C	Helitron	RC	1170	short	120	medium	1773296	chromoarm	8001	no-CHH	no-CHH	.	.	.	.	.
Chr2	5407889	5407999	AT2TE21885	.	+	HELITRONY3	Helitron	RC	110	short	1399	high	1774466	chromoarm	7891	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	5408186	5408343	AT2TE21890	.	+	ATTIRX1A	.	DNA	157	short	63	medium	1774763	chromoarm	7547	no-CHH	no-CHH	.	.	.	.	.
Chr2	5409065	5409543	AT2TE21895	.	-	TNAT1A	.	DNA	478	short	162	medium	1775642	chromoarm	6347	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	5409543	5409606	AT2TE21900	.	-	TNAT1A	.	DNA	63	tiny	162	medium	1776120	chromoarm	6284	no-CHH	no-CHH	.	.	.	.	.
Chr2	5409606	5409676	AT2TE21905	.	-	TNAT1A	.	DNA	70	tiny	162	medium	1776183	chromoarm	6214	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	5410765	5410860	AT2TE21910	.	-	ATCOPIA54	Copia	LTR	95	tiny	18	low	1777342	chromoarm	5030	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	5412449	5413079	AT2TE21915	.	-	Unassigned	.	Unassigned	630	short	.	low	1779026	chromoarm	2811	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	5413192	5413238	AT2TE21920	.	-	ATENSPM2	En-Spm	DNA	46	tiny	114	medium	1779769	chromoarm	2652	no-RdDM	no-CHH	.	.	.	.	.
Chr2	5413238	5414854	AT2TE21925	.	-	ATENSPM6	En-Spm	DNA	1616	short	151	medium	1779815	chromoarm	1036	no-RdDM	no-CHH	.	.	.	.	.
Chr2	5414854	5414895	AT2TE21930	.	-	ATENSPM2	En-Spm	DNA	41	tiny	114	medium	1781431	chromoarm	995	no-CHH	no-CHH	.	.	.	.	.
Chr2	5416973	5418128	AT2TE21940	.	+	ATREP10D	Helitron	RC	1155	short	1295	high	1783550	chromoarm	101	no-CHH	no-CHH	.	.	.	.	.
Chr2	5423295	5427630	AT2TE21970	.	+	ATLINE1A	L1	LINE	4335	medium	289	high	1789872	chromoarm	6423	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5425470	5425850	AT2TE21975	.	-	SIMPLEHAT2	HAT	DNA	380	short	73	medium	1792047	chromoarm	8598	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5426923	5427122	AT2TE21980	.	+	ATLINE1A	L1	LINE	199	short	289	high	1793500	chromoarm	9933	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5427688	5428031	AT2TE21985	.	-	ATSINE4	.	SINE	343	short	98	medium	1794265	chromoarm	9024	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5430472	5430870	AT2TE21995	.	+	ATREP10A	Helitron	RC	398	short	279	high	1797049	chromoarm	6185	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	5431343	5431441	AT2TE22000	.	+	ATREP7	Helitron	RC	98	tiny	164	medium	1797920	chromoarm	5614	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	5431952	5433163	AT2TE22005	.	-	ATHILA4B_LTR	Gypsy	LTR	1211	short	143	medium	1798529	chromoarm	3892	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5433422	5433468	AT2TE22010	.	+	HELITRONY1D	Helitron	RC	46	tiny	756	high	1799999	chromoarm	3587	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	5433468	5434387	AT2TE22015	.	+	HELITRONY3	Helitron	RC	919	short	1399	high	1800045	chromoarm	2668	no-CHH	no-CHH	.	.	.	.	.
Chr2	5435852	5436305	AT2TE22020	.	-	ATSINE4	.	SINE	453	short	98	medium	1802429	chromoarm	750	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	5438814	5439236	AT2TE22030	.	-	ATLINE1A	L1	LINE	422	short	289	high	1805391	chromoarm	355	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5439536	5440434	AT2TE22035	.	-	ATREP15	Helitron	RC	898	short	1003	high	1806113	chromoarm	1077	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	5440526	5444575	AT2TE22040	.	+	ATENSPM1	En-Spm	DNA	4049	medium	30	low	1807103	chromoarm	2067	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	5441501,5441505,5441505	5444141,5444136,5444208	+,+,+	transcript_id-"94a7d85e-79d2-4983-a9e4-ab40d24b875c|7",transcript_id-"c2c190e9-8571-465f-91e7-647e0c7b1607|34",transcript_id-"5e7f2b6c-d778-40c7-8078-f10ff901fdea|120"
Chr2	5444577	5444604	AT2TE22045	.	+	ATENSPM1A	En-Spm	DNA	28	tiny	77	medium	1811153	chromoarm	6117	.	.	.	.	.	.	.
Chr2	5446902	5446986	AT2TE22055	.	-	META1	Copia	LTR	84	tiny	138	medium	1813479	chromoarm	8443	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	5448048	5448117	AT2TE22060	.	-	ATGP5	Gypsy	LTR	69	tiny	86	medium	1814625	chromoarm	9589	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	5448117	5453268	AT2TE22065	.	-	ATGP5	Gypsy	LTR	5151	long	86	medium	1814694	chromoarm	9658	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	5453268	5453327	AT2TE22070	.	-	ATGP5	Gypsy	LTR	59	tiny	86	medium	1819845	chromoarm	14809	no-CHH	no-RdDM	.	.	.	.	.
Chr2	5453327	5456816	AT2TE22075	.	-	ATENSPM9	En-Spm	DNA	3489	medium	97	medium	1819904	chromoarm	14868	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	5453643	5453840	AT2TE22080	.	-	ATENSPM9	En-Spm	DNA	197	short	97	medium	1820220	chromoarm	15184	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	5456824	5456955	AT2TE22090	.	-	ATENSPM6	En-Spm	DNA	131	short	151	medium	1823401	chromoarm	18365	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5456955	5457434	AT2TE22095	.	-	ATREP3	Helitron	RC	479	short	1439	high	1823532	chromoarm	18496	no-CHH	no-CHH	.	.	.	.	.
Chr2	5457434	5457468	AT2TE22100	.	+	ATREP4	Helitron	RC	34	tiny	832	high	1824011	chromoarm	18975	no-CHH	no-CHH	.	.	.	.	.
Chr2	5457468	5457685	AT2TE22105	.	-	ATENSPM9	En-Spm	DNA	217	short	97	medium	1824045	chromoarm	19009	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	5457691	5458476	AT2TE22110	.	-	ATGP5	Gypsy	LTR	785	short	86	medium	1824268	chromoarm	19232	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	5458478	5458523	AT2TE22115	.	-	ATGP6	Gypsy	LTR	45	tiny	25	low	1825055	chromoarm	20019	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	5458994	5460170	AT2TE22120	.	-	ATHILA4B_LTR	Gypsy	LTR	1176	short	143	medium	1825571	chromoarm	20535	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	5461640	5461972	AT2TE22125	.	-	ATHPOGO	Pogo	DNA	332	short	25	low	1828217	chromoarm	23181	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	5462993	5463070	AT2TE22130	.	-	ATGP7	Gypsy	LTR	77	tiny	47	low	1829570	chromoarm	24534	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	5463607	5464188	AT2TE22135	.	+	ATGP5	Gypsy	LTR	581	short	86	medium	1830184	chromoarm	25148	no-CHH	no-CHH	.	.	.	.	.
Chr2	5465293	5465929	AT2TE22140	.	+	ATHATN7	HAT	DNA	636	short	71	medium	1831870	chromoarm	26834	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	5465929	5466054	AT2TE22145	.	-	ATREP4	Helitron	RC	125	short	832	high	1832506	chromoarm	27470	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	5466054	5467917	AT2TE22150	.	-	ATREP3	Helitron	RC	1863	short	1439	high	1832631	chromoarm	27595	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5467917	5468179	AT2TE22155	.	+	ATREP3	Helitron	RC	262	short	1439	high	1834494	chromoarm	28952	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5468179	5468350	AT2TE22160	.	+	ATREP15	Helitron	RC	171	short	1003	high	1834756	chromoarm	28781	no-CHH	no-CHH	.	.	.	.	.
Chr2	5468350	5468372	AT2TE22165	.	+	ATCOPIA95	Copia	LTR	22	tiny	72	medium	1834927	chromoarm	28759	no-CHH	no-CHH	.	.	.	.	.
Chr2	5468372	5469707	AT2TE22170	.	+	ATCOPIA95	Copia	LTR	1335	short	72	medium	1834949	chromoarm	27424	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	5468844	5469171	+	transcript_id-"1b5ab8fa-8cd6-4bfa-a14a-2c559cf0347c|3"
Chr2	5469707	5470723	AT2TE22175	.	-	ATLANTYS2	Gypsy	LTR	1016	short	179	medium	1836284	chromoarm	26408	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	5470723	5471062	AT2TE22180	.	+	ATLANTYS2	Gypsy	LTR	339	short	179	medium	1837300	chromoarm	26069	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	5471062	5479129	AT2TE22185	.	+	ATLANTYS2	Gypsy	LTR	8067	long	179	medium	1837639	chromoarm	18002	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	5473571	5474153	AT2TE22190	.	-	ATGP10	Gypsy	LTR	582	short	165	medium	1840148	chromoarm	22978	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	5479205	5481678	AT2TE22220	.	+	ATCOPIA95	Copia	LTR	2473	medium	72	medium	1845782	chromoarm	15453	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	5481688	5481821	AT2TE22225	.	-	ATHILA7A	Gypsy	LTR	133	short	31	low	1848265	chromoarm	15310	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	5481821	5483743	AT2TE22230	.	-	ATHILA7	Gypsy	LTR	1922	short	134	medium	1848398	chromoarm	13388	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	5483743	5490467	AT2TE22235	.	-	ATHILA7A	Gypsy	LTR	6724	long	31	low	1850320	chromoarm	6664	no-RdDM	no-CHH	ExpressedAndAnnotated	5486088	5484079	-	transcript_id-"ed2e096d-f754-4d27-84e5-fe2ad4197551|3"
Chr2	5490468	5490595	AT2TE22240	.	+	ATCOPIA95	Copia	LTR	127	short	72	medium	1857045	chromoarm	6536	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	5491267	5496081	AT2TE22245	.	+	ATHILA4A	Gypsy	LTR	4814	medium	310	high	1857844	chromoarm	1050	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	5491633	5495401	+	transcript_id-"b7735bba-37ae-461d-965b-00c3e5cd283e|4"
Chr2	5498773	5498815	AT2TE22255	.	+	ATHILA2	Gypsy	LTR	42	tiny	413	high	1865350	chromoarm	106	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	5498815	5500511	AT2TE22260	.	+	ATHILA2	Gypsy	LTR	1696	short	413	high	1865392	chromoarm	148	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	5501964	5502507	AT2TE22265	.	-	ATLANTYS1	Gypsy	LTR	543	short	153	medium	1868541	chromoarm	3297	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5503885	5505003	AT2TE22270	.	+	VANDAL17	MuDR	DNA	1118	short	178	medium	1870462	chromoarm	5218	no-RdDM	no-CHH	.	.	.	.	.
Chr2	5505885	5506110	AT2TE22275	.	+	VANDAL17	MuDR	DNA	225	short	178	medium	1872462	chromoarm	5947	no-RdDM	no-CHH	.	.	.	.	.
Chr2	5506522	5506584	AT2TE22280	.	+	VANDAL21	MuDR	DNA	62	tiny	64	medium	1873099	chromoarm	5473	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	5506584	5507218	AT2TE22285	.	+	VANDAL21	MuDR	DNA	634	short	64	medium	1873161	chromoarm	4839	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5507383	5507739	AT2TE22290	.	-	VANDAL20	MuDR	DNA	356	short	51	medium	1873960	chromoarm	4318	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	5509343	5511171	AT2TE22295	.	-	ATLINE1A	L1	LINE	1828	short	289	high	1875920	chromoarm	886	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5515053	5516134	AT2TE22305	.	-	ATREP10D	Helitron	RC	1081	short	1295	high	1881630	chromoarm	418	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	5516623	5516862	AT2TE22310	.	-	TNAT1A	.	DNA	239	short	162	medium	1883200	chromoarm	1988	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	5517608	5520081	AT2TE22315	.	-	ATLINE1_6	L1	LINE	2473	medium	129	medium	1884185	chromoarm	2973	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	5517705,5517720,5517720	5519923,5519936,5520543	+,+,+	transcript_id-"ab67c969-f39d-4380-96fa-ae1cf2482609|6",transcript_id-"c68af881-e0b3-46bb-b3f6-b3837bf97164|32",transcript_id-"d60c16ad-4a13-4a63-bb28-8774008df573|5"
Chr2	5522538	5522563	AT2TE22325	.	+	VANDAL12	MuDR	DNA	25	tiny	37	low	1889115	chromoarm	7903	no-CHH	no-RdDM	.	.	.	.	.
Chr2	5522563	5523649	AT2TE22330	.	+	VANDAL9	MuDR	DNA	1086	short	43	low	1889140	chromoarm	7928	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	5523653	5527606	AT2TE22335	.	-	ATENSPM1A	En-Spm	DNA	3953	medium	77	medium	1890230	chromoarm	8918	no-RdDM	no-RdDM	ExpressedAndAnnotated	5526177	5524025	-	transcript_id-"f966e551-1f61-460e-b2b0-932eb0aadd00|5"
Chr2	5527705	5527789	AT2TE22340	.	+	VANDALNX1	MuDR	DNA	84	tiny	14	low	1894282	chromoarm	8735	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	5528711	5534059	AT2TE22345	.	-	ATLANTYS1	Gypsy	LTR	5348	long	153	medium	1895288	chromoarm	2465	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	5534247	5534492	AT2TE22350	.	-	ATLANTYS2	Gypsy	LTR	245	short	179	medium	1900824	chromoarm	2032	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	5534494	5534704	AT2TE22355	.	-	ATLINE1A	L1	LINE	210	short	289	high	1901071	chromoarm	1820	no-RdDM	no-CHH	.	.	.	.	.
Chr2	5535915	5536054	AT2TE22360	.	+	HELITRONY3A	Helitron	RC	139	short	49	low	1902492	chromoarm	470	no-CHH	no-CHH	.	.	.	.	.
Chr2	5541698	5542048	AT2TE22390	.	+	ATTIRX1B	.	DNA	350	short	44	low	1908275	chromoarm	291	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	5542048	5542206	AT2TE22395	.	+	ATREP15	Helitron	RC	158	short	1003	high	1908625	chromoarm	133	no-CHH	no-CHH	.	.	.	.	.
Chr2	5543180	5543610	AT2TE22400	.	-	ATCOPIA26	Copia	LTR	430	short	19	low	1909757	chromoarm	697	no-CHH	no-CHH	.	.	.	.	.
Chr2	5556690	5557064	AT2TE22470	.	-	ATREP2A	Helitron	RC	374	short	116	medium	1923267	chromoarm	1147	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	5557064	5557360	AT2TE22475	.	+	ATHAT10	HAT	DNA	296	short	35	low	1923641	chromoarm	1521	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	5557360	5558208	AT2TE22480	.	-	AT9NMU1	MuDR	DNA	848	short	45	low	1923937	chromoarm	1817	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5558218	5559023	AT2TE22485	.	-	HELITRONY1E	Helitron	RC	805	short	447	high	1924795	chromoarm	2675	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	5560011	5560608	AT2TE22490	.	+	TAT1_ATH	Gypsy	LTR	597	short	87	medium	1926588	chromoarm	4468	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	5560972	5565082	AT2TE22495	.	+	ATLANTYS1	Gypsy	LTR	4110	medium	153	medium	1927549	chromoarm	5429	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	5563576	5563629	AT2TE22500	.	+	ATLANTYS2	Gypsy	LTR	53	tiny	179	medium	1930153	chromoarm	8033	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	5565095	5573068	AT2TE22505	.	+	ATHILA2	Gypsy	LTR	7973	long	413	high	1931672	chromoarm	9552	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr2	5573068	5573686	AT2TE22510	.	+	ATHILA2	Gypsy	LTR	618	short	413	high	1939645	chromoarm	14531	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	5573687	5573728	AT2TE22515	.	+	ATHILA2	Gypsy	LTR	42	tiny	413	high	1940263	chromoarm	14489	.	.	LowExpressed	.	.	.	.
Chr2	5573728	5578989	AT2TE22520	.	+	ATHILA2	Gypsy	LTR	5261	long	413	high	1940305	chromoarm	9228	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	5575530,5576001	5575928,5577999	+,+	transcript_id-"793764b1-5a0a-403c-a98d-eb25e4a93ddc|3",transcript_id-"3a76f8bf-d173-41c7-8ea9-cc849987767b|3"
Chr2	5578990	5579130	AT2TE22525	.	+	ATLANTYS2	Gypsy	LTR	140	short	179	medium	1945567	chromoarm	9087	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr2	5583336	5583581	AT2TE22540	.	-	ATREP4	Helitron	RC	245	short	832	high	1949913	chromoarm	4636	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	5583581	5584814	AT2TE22545	.	-	HELITRONY1B	Helitron	RC	1233	short	414	high	1950158	chromoarm	3403	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5584814	5585393	AT2TE22550	.	-	TNAT1A	.	DNA	579	short	162	medium	1951391	chromoarm	2824	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	5585393	5585503	AT2TE22555	.	+	ATREP4	Helitron	RC	110	short	832	high	1951970	chromoarm	2714	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	5588705	5588937	AT2TE22565	.	-	VANDAL1	MuDR	DNA	232	short	80	medium	1955282	chromoarm	383	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5589102	5590107	AT2TE22570	.	-	HELITRONY1E	Helitron	RC	1005	short	447	high	1955679	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	5590501	5590575	AT2TE22575	.	+	ATREP5	Helitron	RC	74	tiny	624	high	1957078	chromoarm	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	5591419	5591461	AT2TE22580	.	-	ATREP11	Helitron	RC	42	tiny	841	high	1957996	chromoarm	0	PolIV-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	5591471	5592863	AT2TE22585	.	+	HELITRONY1A	Helitron	RC	1392	short	271	high	1958048	chromoarm	49	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	5592863	5593106	AT2TE22590	.	+	ATREP10D	Helitron	RC	243	short	1295	high	1959440	chromoarm	163	no-CHH	no-CHH	.	.	.	.	.
Chr2	5600320	5600342	AT2TE22630	.	-	TA11	L1	LINE	22	tiny	157	medium	1966897	chromoarm	397	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	5600342	5605594	AT2TE22635	.	-	TA11	L1	LINE	5252	long	157	medium	1966919	chromoarm	419	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	5606127	5606390	AT2TE22640	.	-	RP1_AT	.	DNA	263	short	87	medium	1972704	chromoarm	3596	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	5607156	5607207	AT2TE22645	.	-	ATREP4	Helitron	RC	51	tiny	832	high	1973733	chromoarm	2779	no-CHH	no-CHH	.	.	.	.	.
Chr2	5607207	5607444	AT2TE22650	.	+	ATREP10B	Helitron	RC	237	short	491	high	1973784	chromoarm	2542	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5607444	5607739	AT2TE22655	.	+	ATREP10A	Helitron	RC	295	short	279	high	1974021	chromoarm	2247	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5607739	5609302	AT2TE22660	.	+	ATREP10B	Helitron	RC	1563	short	491	high	1974316	chromoarm	684	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5609302	5609437	AT2TE22665	.	+	ATREP10D	Helitron	RC	135	short	1295	high	1975879	chromoarm	549	no-CHH	no-CHH	.	.	.	.	.
Chr2	5609437	5609526	AT2TE22670	.	+	HELITRON4	Helitron	RC	89	tiny	199	medium	1976014	chromoarm	460	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	5609526	5609600	AT2TE22675	.	+	HELITRONY1D	Helitron	RC	74	tiny	756	high	1976103	chromoarm	386	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	5609600	5609831	AT2TE22680	.	-	ATREP15	Helitron	RC	231	short	1003	high	1976177	chromoarm	155	PolIV-and-RDR6-RdDM	no-CHH	ExpressedAndAnnotated	5609534	5610334	+	transcript_id-"608d55f3-d7c5-404b-9fcc-54f426e1482b|30"
Chr2	5610253	5610302	AT2TE22685	.	-	ATREP4	Helitron	RC	49	tiny	832	high	1976830	chromoarm	81	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	5610302	5612406	AT2TE22690	.	+	ARNOLDY1	MuDR	DNA	2104	medium	237	high	1976879	chromoarm	130	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	5612406	5612540	AT2TE22695	.	+	ATREP15	Helitron	RC	134	short	1003	high	1978983	chromoarm	2234	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	5617511	5622394	AT2TE22720	.	-	TA11	L1	LINE	4883	medium	157	medium	1984088	chromoarm	5541	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	5623087	5627317	AT2TE22725	.	+	TA11	L1	LINE	4230	medium	157	medium	1989664	chromoarm	618	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	5631378	5636319	AT2TE22740	.	-	TA11	L1	LINE	4941	medium	157	medium	1997955	chromoarm	271	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	5636319	5636336	AT2TE22745	.	-	TA11	L1	LINE	17	tiny	157	medium	2002896	chromoarm	716	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	5643356	5644475	AT2TE22780	.	+	ATREP10D	Helitron	RC	1119	short	1295	high	2009933	chromoarm	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	5645158	5645327	AT2TE22785	.	-	HELITRON2	Helitron	RC	169	short	194	medium	2011735	chromoarm	1543	no-CHH	no-CHH	.	.	.	.	.
Chr2	5645530	5645979	AT2TE22790	.	+	HELITRONY1D	Helitron	RC	449	short	756	high	2012107	chromoarm	1192	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	5645995	5646595	AT2TE22795	.	+	ATREP6	Helitron	RC	600	short	181	medium	2012572	chromoarm	576	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5646595	5646632	AT2TE22800	.	+	ATREP11A	Helitron	RC	37	tiny	95	medium	2013172	chromoarm	539	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	5647516	5648363	AT2TE22805	.	-	ATREP10C	Helitron	RC	847	short	123	medium	2014093	chromoarm	132	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5648363	5648665	AT2TE22810	.	-	ATLINE1_5	L1	LINE	302	short	91	medium	2014940	chromoarm	138	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	5649281	5649720	AT2TE22815	.	+	ATSINE2A	.	SINE	439	short	33	low	2015858	chromoarm	0	no-CHH	no-CHH	ExpressedAndAnnotated	5648694	5649783	+	transcript_id-"0a7ab270-a456-40a3-baa2-a5fb60657dc5|13"
Chr2	5656853	5657024	AT2TE22850	.	-	VANDAL5	MuDR	DNA	171	short	85	medium	2023430	chromoarm	364	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	5657466	5657666	AT2TE22855	.	-	VANDAL4	MuDR	DNA	200	short	102	medium	2024043	chromoarm	977	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	5657703	5658120	AT2TE22860	.	-	VANDAL5A	MuDR	DNA	417	short	56	medium	2024280	chromoarm	1214	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	5658120	5658566	AT2TE22865	.	-	VANDAL5	MuDR	DNA	446	short	85	medium	2024697	chromoarm	1631	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	5658598	5658877	AT2TE22870	.	+	TAT1_ATH	Gypsy	LTR	279	short	87	medium	2025175	chromoarm	2109	no-RdDM	no-CHH	.	.	.	.	.
Chr2	5659074	5659136	AT2TE22875	.	+	ATLANTYS3	Gypsy	LTR	62	tiny	142	medium	2025651	chromoarm	2585	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	5659136	5660083	AT2TE22880	.	-	VANDAL5	MuDR	DNA	947	short	85	medium	2025713	chromoarm	2647	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	5662669	5663893	AT2TE22890	.	+	ATREP4	Helitron	RC	1224	short	832	high	2029246	chromoarm	6180	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5665494	5665672	AT2TE22895	.	+	ATCOPIA8A	Copia	LTR	178	short	12	low	2032071	chromoarm	5820	no-CHH	no-CHH	.	.	.	.	.
Chr2	5668157	5669185	AT2TE22905	.	+	ATDNA12T3A	.	DNA	1028	short	22	low	2034734	chromoarm	2307	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	5670142	5671281	AT2TE22910	.	+	ATMUNX1	MuDR	DNA	1139	short	155	medium	2036719	chromoarm	211	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5670291	5670439	AT2TE22915	.	-	VANDALNX2	MuDR	DNA	148	short	37	low	2036868	chromoarm	1053	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5670439	5671143	AT2TE22920	.	+	HELITRONY1B	Helitron	RC	704	short	414	high	2037016	chromoarm	349	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5677007	5677859	AT2TE22950	.	-	HELITRONY1E	Helitron	RC	852	short	447	high	2043584	chromoarm	146	no-CHH	no-CHH	.	.	.	.	.
Chr2	5683813	5684118	AT2TE22980	.	+	ATREP10B	Helitron	RC	305	short	491	high	2050390	chromoarm	419	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5684118	5684241	AT2TE22985	.	-	ATHPOGON1	Pogo	DNA	123	short	174	medium	2050695	chromoarm	296	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5709300	5709475	AT2TE23110	.	+	VANDALNX1	MuDR	DNA	176	short	14	low	2075876	chromoarm	404	.	.	.	.	.	.	.
Chr2	5709476	5709608	AT2TE23115	.	+	VANDAL9	MuDR	DNA	133	short	43	low	2076052	chromoarm	580	.	.	.	.	.	.	.
Chr2	5709608	5713343	AT2TE23120	.	-	ATCOPIA97	Copia	LTR	3735	medium	10	low	2076185	chromoarm	713	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	5713499	5713594	AT2TE23125	.	+	VANDAL9	MuDR	DNA	95	tiny	43	low	2080076	chromoarm	4604	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	5713761	5714069	AT2TE23130	.	+	ATHILA4A	Gypsy	LTR	308	short	310	high	2080338	chromoarm	4866	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	5716185	5717083	AT2TE23140	.	+	ATREP15	Helitron	RC	898	short	1003	high	2082762	chromoarm	6955	no-RdDM	no-CHH	.	.	.	.	.
Chr2	5717083	5717147	AT2TE23145	.	+	HELITRONY1D	Helitron	RC	64	tiny	756	high	2083660	chromoarm	6891	no-RdDM	no-CHH	.	.	.	.	.
Chr2	5719720	5720413	AT2TE23155	.	-	ATREP11	Helitron	RC	693	short	841	high	2086297	chromoarm	3625	no-RdDM	no-CHH	.	.	.	.	.
Chr2	5720413	5720454	AT2TE23160	.	+	HELITRONY3	Helitron	RC	41	tiny	1399	high	2086990	chromoarm	3584	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	5720791	5721720	AT2TE23165	.	+	ATREP11	Helitron	RC	929	short	841	high	2087368	chromoarm	2318	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	5723032	5723691	AT2TE23170	.	+	AT9TSD1	MuDR	DNA	659	short	55	medium	2089609	chromoarm	347	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	5725592	5727402	AT2TE23175	.	-	ATHILA4	Gypsy	LTR	1810	short	250	high	2092169	chromoarm	344	no-RdDM	no-RdDM	ExpressedAndAnnotated	5727049	5725455	-	transcript_id-"38f0f58a-f867-48b7-9f9b-743b21b65175|3"
Chr2	5727402	5729656	AT2TE23180	.	+	ATHILA4A	Gypsy	LTR	2254	medium	310	high	2093979	chromoarm	2154	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5729797	5732119	AT2TE23185	.	+	ATENSPM9	En-Spm	DNA	2322	medium	97	medium	2096374	chromoarm	2835	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	5730677	5730908	AT2TE23190	.	+	ATENSPM5	En-Spm	DNA	231	short	111	medium	2097254	chromoarm	4046	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	5730908	5730935	AT2TE23195	.	+	ATENSPM5	En-Spm	DNA	27	tiny	111	medium	2097485	chromoarm	4019	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	5732119	5732175	AT2TE23200	.	+	ATENSPM9	En-Spm	DNA	56	tiny	97	medium	2098696	chromoarm	2779	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	5732175	5732215	AT2TE23205	.	+	ATENSPM6	En-Spm	DNA	40	tiny	151	medium	2098752	chromoarm	2739	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	5732215	5732411	AT2TE23210	.	+	ATENSPM9	En-Spm	DNA	196	short	97	medium	2098792	chromoarm	2543	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	5732907	5732947	AT2TE23215	.	-	HELITRONY1D	Helitron	RC	40	tiny	756	high	2099484	chromoarm	2007	no-CHH	no-RdDM	.	.	.	.	.
Chr2	5732947	5733139	AT2TE23220	.	-	BRODYAGA2	MuDR	DNA	192	short	525	high	2099524	chromoarm	1815	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	5733139	5734015	AT2TE23225	.	-	BRODYAGA2	MuDR	DNA	876	short	525	high	2099716	chromoarm	939	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	5734015	5734037	AT2TE23230	.	-	BRODYAGA2	MuDR	DNA	22	tiny	525	high	2100592	chromoarm	917	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	5736800	5737912	AT2TE23240	.	+	ATIS112A	Harbinger	DNA	1112	short	173	medium	2103377	chromoarm	1156	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	5736596,5736602,5737742	5738027,5738030,5738088	+,+,+	transcript_id-"b5a531ff-76ee-4138-a38f-fce378d697c6|20",transcript_id-"da4173f9-10e9-4951-86d7-413955ae458e|4",transcript_id-"8f8060c0-0e6e-4283-a17e-3250a1024aba|3"
Chr2	5737912	5739437	AT2TE23245	.	-	ATREP3	Helitron	RC	1525	short	1439	high	2104489	chromoarm	2268	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	5739437	5739477	AT2TE23250	.	+	ATREP10	Helitron	RC	40	tiny	63	medium	2106014	chromoarm	2501	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr2	5739506	5741402	AT2TE23255	.	+	ARNOLDY1	MuDR	DNA	1896	short	237	high	2106083	chromoarm	576	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5741403	5741686	AT2TE23260	.	-	ATHATN3	HAT	DNA	283	short	70	medium	2107980	chromoarm	292	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5746818	5747301	AT2TE23290	.	-	HELITRONY3	Helitron	RC	483	short	1399	high	2113395	chromoarm	237	no-CHH	no-CHH	.	.	.	.	.
Chr2	5747302	5747697	AT2TE23295	.	-	SIMPLEGUY1	Harbinger	DNA	396	short	116	medium	2113878	chromoarm	720	.	.	.	.	.	.	.
Chr2	5747698	5748452	AT2TE23300	.	+	HELITRONY1D	Helitron	RC	755	short	756	high	2114274	chromoarm	1116	.	.	.	.	.	.	.
Chr2	5748452	5748678	AT2TE23305	.	+	ATREP3	Helitron	RC	226	short	1439	high	2115029	chromoarm	1871	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	5748969	5749476	AT2TE23310	.	-	BRODYAGA1	MuDR	DNA	507	short	251	high	2115546	chromoarm	2388	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5749476	5749661	AT2TE23315	.	-	BRODYAGA1A	MuDR	DNA	185	short	586	high	2116053	chromoarm	2895	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	5750640	5750709	AT2TE23320	.	-	ATREP3	Helitron	RC	69	tiny	1439	high	2117217	chromoarm	2566	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5750709	5751392	AT2TE23325	.	+	ATDNA2T9A	MuDR	DNA	683	short	48	low	2117286	chromoarm	1883	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	5751392	5751444	AT2TE23330	.	-	ATREP3	Helitron	RC	52	tiny	1439	high	2117969	chromoarm	1831	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr2	5751568	5751630	AT2TE23335	.	-	ARNOLD1	MuDR	DNA	63	tiny	39	low	2118144	chromoarm	1645	.	.	.	.	.	.	.
Chr2	5751630	5752351	AT2TE23340	.	-	ATMU4	MuDR	DNA	721	short	14	low	2118207	chromoarm	924	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5752354	5752448	AT2TE23345	.	+	ARNOLD1	MuDR	DNA	94	tiny	39	low	2118931	chromoarm	827	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	5752448	5752967	AT2TE23350	.	+	HELITRONY3	Helitron	RC	519	short	1399	high	2119025	chromoarm	308	no-CHH	no-CHH	.	.	.	.	.
Chr2	5752967	5753005	AT2TE23355	.	+	ATREP3	Helitron	RC	38	tiny	1439	high	2119544	chromoarm	270	no-CHH	no-CHH	.	.	.	.	.
Chr2	5757561	5757661	AT2TE23370	.	+	HELITRONY3	Helitron	RC	100	short	1399	high	2124138	chromoarm	496	no-CHH	no-CHH	.	.	.	.	.
Chr2	5757661	5758521	AT2TE23375	.	+	ATREP10B	Helitron	RC	860	short	491	high	2124238	chromoarm	596	no-CHH	no-CHH	.	.	.	.	.
Chr2	5758521	5758622	AT2TE23380	.	-	ATDNA2T9C	MuDR	DNA	101	short	242	high	2125098	chromoarm	1456	no-CHH	no-CHH	.	.	.	.	.
Chr2	5758622	5761055	AT2TE23385	.	-	ATREP11	Helitron	RC	2433	medium	841	high	2125199	chromoarm	1557	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5761055	5761104	AT2TE23390	.	-	HELITRONY3	Helitron	RC	49	tiny	1399	high	2127632	chromoarm	3990	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	5761104	5762740	AT2TE23395	.	-	ARNOLDY1	MuDR	DNA	1636	short	237	high	2127681	chromoarm	4039	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	5762754	5762794	AT2TE23400	.	+	HELITRONY3	Helitron	RC	40	tiny	1399	high	2129331	chromoarm	5689	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	5762794	5763044	AT2TE23405	.	+	ARNOLDY2	MuDR	DNA	250	short	288	high	2129371	chromoarm	5444	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	5763126	5763357	AT2TE23410	.	-	ATMUN1	MuDR	DNA	231	short	107	medium	2129703	chromoarm	5131	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5763359	5765118	AT2TE23415	.	-	ATDNAI27T9B	MuDR	DNA	1759	short	43	low	2129936	chromoarm	3370	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	5763578	5764651	+	transcript_id-"5ba5ed00-687d-4c3c-a357-05d1e1395a8f|3"
Chr2	5763861	5764281	AT2TE23420	.	-	ATDNA1T9A	MuDR	DNA	420	short	36	low	2130438	chromoarm	4207	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	5764281	5764463	AT2TE23425	.	+	ATDNAI26T9	MuDR	DNA	182	short	25	low	2130858	chromoarm	4025	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	5765173	5765624	AT2TE23430	.	+	ATDNAI27T9B	MuDR	DNA	451	short	43	low	2131750	chromoarm	2864	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	5765627	5765913	AT2TE23435	.	-	ATMUN1	MuDR	DNA	287	short	107	medium	2132203	chromoarm	2575	.	.	.	.	.	.	.
Chr2	5765920	5766582	AT2TE23440	.	-	HELITRONY1B	Helitron	RC	662	short	414	high	2132497	chromoarm	1906	no-CHH	no-CHH	.	.	.	.	.
Chr2	5772999	5773237	AT2TE23470	.	+	ATENSPM1A	En-Spm	DNA	239	short	77	medium	2139575	chromoarm	860	.	.	.	.	.	.	.
Chr2	5774526	5774612	AT2TE23475	.	-	BRODYAGA1A	MuDR	DNA	86	tiny	586	high	2141103	chromoarm	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	5774613	5775710	AT2TE23480	.	+	ATN9_1	MuDR	DNA	1098	short	65	medium	2141189	chromoarm	0	.	.	.	.	.	.	.
Chr2	5775710	5775836	AT2TE23485	.	+	ATREP15	Helitron	RC	126	short	1003	high	2142287	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	5777435	5777825	AT2TE23490	.	-	VANDAL9	MuDR	DNA	390	short	43	low	2144012	chromoarm	1156	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	5777840	5778222	AT2TE23495	.	-	VANDAL10	MuDR	DNA	382	short	13	low	2144417	chromoarm	1561	PolIV-RdDM	no-CHH	ExpressedAndAnnotated	5777600	5778152	+	transcript_id-"a189bfe8-b8de-42e9-add0-61623078ff5f|3"
Chr2	5778638	5778889	AT2TE23500	.	-	VANDAL9	MuDR	DNA	251	short	43	low	2145215	chromoarm	2359	no-RdDM	no-CHH	.	.	.	.	.
Chr2	5778901	5780089	AT2TE23505	.	+	ATGP1	Gypsy	LTR	1188	short	144	medium	2145478	chromoarm	2622	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	5780102	5786739	AT2TE23510	.	-	ATGP1	Gypsy	LTR	6637	long	144	medium	2146679	chromoarm	1876	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	5786739	5787728	AT2TE23515	.	-	ATGP1	Gypsy	LTR	989	short	144	medium	2153316	chromoarm	887	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5787732	5788146	AT2TE23520	.	-	VANDAL12	MuDR	DNA	414	short	37	low	2154309	chromoarm	469	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5792230	5792781	AT2TE23540	.	-	ATREP5	Helitron	RC	551	short	624	high	2158807	chromoarm	1173	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5792781	5797609	AT2TE23545	.	-	ATCOPIA48	Copia	LTR	4828	medium	15	low	2159358	chromoarm	1724	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr2	5797609	5797677	AT2TE23550	.	-	ATCOPIA8A	Copia	LTR	68	tiny	12	low	2164186	chromoarm	6552	no-RdDM	no-CHH	.	.	.	.	.
Chr2	5798250	5798545	AT2TE23555	.	-	ATDNAI27T9A	MuDR	DNA	295	short	116	medium	2164827	chromoarm	7193	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	5798397	5800009	+	transcript_id-"aa6f6f1d-c50e-4844-be90-f36ca42100b3|3"
Chr2	5798983	5799531	AT2TE23560	.	-	LIMPET1	MuDR	DNA	548	short	116	medium	2165560	chromoarm	7926	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	5798397	5800009	+	transcript_id-"aa6f6f1d-c50e-4844-be90-f36ca42100b3|3"
Chr2	5799072	5799208	AT2TE23565	.	-	LIMPET1	MuDR	DNA	136	short	116	medium	2165649	chromoarm	8015	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	5799531	5799618	AT2TE23570	.	-	LIMPET1	MuDR	DNA	87	tiny	116	medium	2166108	chromoarm	8474	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	5799770	5800033	AT2TE23575	.	-	ATDNAI27T9A	MuDR	DNA	263	short	116	medium	2166347	chromoarm	8713	PolIV-and-RDR6-RdDM	PolIV-RdDM	ExpressedAndAnnotated	5798397	5800009	+	transcript_id-"aa6f6f1d-c50e-4844-be90-f36ca42100b3|3"
Chr2	5800101	5800354	AT2TE23580	.	-	ATDNAI27T9A	MuDR	DNA	253	short	116	medium	2166678	chromoarm	9044	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	5800648	5800691	AT2TE23585	.	+	ATDNAI26T9	MuDR	DNA	43	tiny	25	low	2167225	chromoarm	9591	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	5800755	5800863	AT2TE23590	.	-	ATDNA1T9A	MuDR	DNA	108	short	36	low	2167332	chromoarm	9698	no-RdDM	no-CHH	.	.	.	.	.
Chr2	5800993	5801150	AT2TE23595	.	-	ATDNA1T9A	MuDR	DNA	157	short	36	low	2167570	chromoarm	9936	no-RdDM	no-CHH	.	.	.	.	.
Chr2	5801973	5802000	AT2TE23600	.	-	VANDAL5A	MuDR	DNA	27	tiny	56	medium	2168550	chromoarm	10916	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	5802000	5802119	AT2TE23605	.	-	VANDAL5A	MuDR	DNA	119	short	56	medium	2168577	chromoarm	10943	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5802351	5802624	AT2TE23610	.	-	LIMPET1	MuDR	DNA	273	short	116	medium	2168928	chromoarm	11294	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5802765	5802831	AT2TE23615	.	-	ATREP10D	Helitron	RC	66	tiny	1295	high	2169342	chromoarm	11708	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5802831	5804028	AT2TE23620	.	-	ATREP3	Helitron	RC	1197	short	1439	high	2169408	chromoarm	11774	no-CHH	no-CHH	.	.	.	.	.
Chr2	5804028	5804569	AT2TE23625	.	-	HELITRONY1E	Helitron	RC	541	short	447	high	2170605	chromoarm	12971	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	5804584	5804725	AT2TE23630	.	+	BRODYAGA1	MuDR	DNA	141	short	251	high	2171161	chromoarm	13527	no-CHH	no-CHH	.	.	.	.	.
Chr2	5804725	5804990	AT2TE23635	.	+	BRODYAGA1A	MuDR	DNA	265	short	586	high	2171302	chromoarm	13668	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	5805699	5805858	AT2TE23640	.	+	VANDAL1N1	MuDR	DNA	159	short	52	medium	2172276	chromoarm	14642	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	5805865	5806166	AT2TE23645	.	+	ATDNA2T9C	MuDR	DNA	302	short	242	high	2172441	chromoarm	14807	.	.	.	.	.	.	.
Chr2	5806214	5806777	AT2TE23650	.	+	VANDAL1N1	MuDR	DNA	563	short	52	medium	2172791	chromoarm	15157	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	5806777	5807651	AT2TE23655	.	+	HELITRONY3	Helitron	RC	874	short	1399	high	2173354	chromoarm	15720	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5807651	5807813	AT2TE23660	.	-	ATGP1	Gypsy	LTR	162	short	144	medium	2174228	chromoarm	16594	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	5807813	5808800	AT2TE23665	.	-	ATGP1	Gypsy	LTR	987	short	144	medium	2174390	chromoarm	16756	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	5808800	5814890	AT2TE23670	.	-	ATGP1	Gypsy	LTR	6090	long	144	medium	2175377	chromoarm	14594	no-RdDM	no-RdDM	ExpressedAndAnnotated	5809858	5809566	-	transcript_id-"356da407-ee45-4d0e-af68-6b1e677ee2f1|7"
Chr2	5814898	5815248	AT2TE23675	.	+	HELITRONY3	Helitron	RC	350	short	1399	high	2181475	chromoarm	14236	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	5815248	5815361	AT2TE23680	.	+	VANDAL2N1	MuDR	DNA	113	short	51	medium	2181825	chromoarm	14123	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5815361	5816878	AT2TE23685	.	+	VANDAL1N1	MuDR	DNA	1517	short	52	medium	2181938	chromoarm	12606	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	5816001	5816104	AT2TE23690	.	+	VANDAL2	MuDR	DNA	103	short	43	low	2182578	chromoarm	13380	no-RdDM	no-CHH	.	.	.	.	.
Chr2	5816878	5816905	AT2TE23695	.	+	VANDAL1	MuDR	DNA	27	tiny	80	medium	2183455	chromoarm	12579	no-CHH	no-CHH	.	.	.	.	.
Chr2	5817219	5817334	AT2TE23700	.	+	ATGP5	Gypsy	LTR	115	short	86	medium	2183796	chromoarm	12150	no-RdDM	no-CHH	.	.	.	.	.
Chr2	5817334	5822205	AT2TE23705	.	+	ATENSPM4	En-Spm	DNA	4871	medium	50	medium	2183911	chromoarm	7279	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	5818592,5818592	5821683,5821684	+,+	transcript_id-"af0c80d2-59f8-4f1c-a04d-370c3a430e80|3",transcript_id-"3a83a19e-69e4-49e8-909a-26f6b2f1f10c|36"
Chr2	5822234	5822415	AT2TE23710	.	+	ATGP6	Gypsy	LTR	181	short	25	low	2188811	chromoarm	7069	DCL3-RdDM	no-RdDM	.	.	.	.	.
Chr2	5822425	5823512	AT2TE23715	.	-	BOMZH1	MuDR	DNA	1087	short	28	low	2189002	chromoarm	5972	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5823621	5824449	AT2TE23720	.	+	ATGP5	Gypsy	LTR	828	short	86	medium	2190198	chromoarm	5035	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr2	5824925	5824961	AT2TE23725	.	-	SIMPLEHAT2	HAT	DNA	36	tiny	73	medium	2191502	chromoarm	4523	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	5824961	5825497	AT2TE23730	.	-	SIMPLEHAT2	HAT	DNA	536	short	73	medium	2191538	chromoarm	3987	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5825497	5825578	AT2TE23735	.	-	SIMPLEHAT2	HAT	DNA	81	tiny	73	medium	2192074	chromoarm	3906	no-CHH	no-CHH	.	.	.	.	.
Chr2	5825578	5825708	AT2TE23740	.	-	SIMPLEHAT2	HAT	DNA	130	short	73	medium	2192155	chromoarm	3776	no-RdDM	no-CHH	.	.	.	.	.
Chr2	5827131	5827642	AT2TE23745	.	+	ATGP5	Gypsy	LTR	511	short	86	medium	2193708	chromoarm	1842	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	5827799	5827896	AT2TE23750	.	-	ATGP5	Gypsy	LTR	97	tiny	86	medium	2194376	chromoarm	1588	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5827896	5828564	AT2TE23755	.	-	ATGP5	Gypsy	LTR	668	short	86	medium	2194473	chromoarm	920	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5828615	5828654	AT2TE23760	.	-	ATGP5	Gypsy	LTR	39	tiny	86	medium	2195192	chromoarm	830	no-RdDM	no-CHH	.	.	.	.	.
Chr2	5828654	5829387	AT2TE23765	.	-	ATGP5	Gypsy	LTR	733	short	86	medium	2195231	chromoarm	97	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5830765	5831173	AT2TE23770	.	-	HELITRONY1D	Helitron	RC	408	short	756	high	2197342	chromoarm	482	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5831173	5831204	AT2TE23775	.	-	HELITRONY1D	Helitron	RC	31	tiny	756	high	2197750	chromoarm	890	no-RdDM	no-CHH	.	.	.	.	.
Chr2	5836182	5837620	AT2TE23800	.	+	ATREP7	Helitron	RC	1438	short	164	medium	2202759	chromoarm	1095	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5837232	5837563	AT2TE23805	.	+	ATREP7	Helitron	RC	332	short	164	medium	2203808	chromoarm	2144	.	.	.	.	.	.	.
Chr2	5840705	5842706	AT2TE23815	.	-	ATREP4	Helitron	RC	2001	medium	832	high	2207282	chromoarm	5618	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5842706	5842762	AT2TE23820	.	-	ATREP4	Helitron	RC	56	tiny	832	high	2209283	chromoarm	7619	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5842847	5843478	AT2TE23825	.	+	ATHATN7	HAT	DNA	631	short	71	medium	2209424	chromoarm	7760	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	5843478	5843589	AT2TE23830	.	+	ATREP15	Helitron	RC	111	short	1003	high	2210055	chromoarm	8391	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5843590	5843961	AT2TE23835	.	-	ATREP3	Helitron	RC	372	short	1439	high	2210166	chromoarm	8502	.	.	.	.	.	.	.
Chr2	5846255	5851427	AT2TE23845	.	-	ATCOPIA49	Copia	LTR	5172	long	34	low	2212832	chromoarm	6108	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	5852515	5852671	AT2TE23850	.	+	ATCOPIA12	Copia	LTR	157	short	15	low	2219091	chromoarm	4864	.	.	ExpressedAndAnnotated	5852553	5852699	+	transcript_id-"82b2cf3b-090f-4a76-ba08-f6304272afe4|4"
Chr2	5852698	5857428	AT2TE23855	.	+	ATCOPIA13	Copia	LTR	4730	medium	35	low	2219275	chromoarm	107	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	5861164	5861197	AT2TE23865	.	+	BRODYAGA1A	MuDR	DNA	33	tiny	586	high	2227741	chromoarm	59	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	5861200	5865906	AT2TE23870	.	+	ATMU10	MuDR	DNA	4706	medium	87	medium	2227777	chromoarm	95	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	5861509,5861509,5864606,5865519	5861719,5862138,5864823,5864876	+,+,+,-	transcript_id-"4fe708cf-4ef0-4c7b-9813-af4bbc5c427f|5",transcript_id-"584514e2-6322-4114-8609-8d3dfb71def7|7",transcript_id-"0660f8c8-c7d5-4c69-af06-be96e9d743c3|18",transcript_id-"58986483-c3e1-4332-ae6f-1ec58fefdce0|5"
Chr2	5865914	5866565	AT2TE23875	.	-	BRODYAGA1A	MuDR	DNA	651	short	586	high	2232491	chromoarm	3287	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	5866565	5866620	AT2TE23880	.	-	HELITRONY1E	Helitron	RC	55	tiny	447	high	2233142	chromoarm	3232	no-CHH	no-CHH	.	.	.	.	.
Chr2	5868710	5868964	AT2TE23890	.	-	ATCOPIA94	Copia	LTR	254	short	39	low	2235287	chromoarm	888	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	5869149	5869291	AT2TE23895	.	-	ATHILA7	Gypsy	LTR	142	short	134	medium	2235726	chromoarm	561	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5869347	5869425	AT2TE23900	.	-	HELITRONY1E	Helitron	RC	78	tiny	447	high	2235924	chromoarm	427	no-CHH	no-RdDM	.	.	.	.	.
Chr2	5869425	5872143	AT2TE23905	.	-	ATREP5	Helitron	RC	2718	medium	624	high	2236002	chromoarm	0	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	5872143	5872200	AT2TE23910	.	-	ATREP5	Helitron	RC	57	tiny	624	high	2238720	chromoarm	1775	no-CHH	no-RdDM	.	.	.	.	.
Chr2	5872200	5872220	AT2TE23915	.	-	HELITRONY1B	Helitron	RC	20	tiny	414	high	2238777	chromoarm	1832	no-CHH	no-CHH	.	.	.	.	.
Chr2	5872220	5872341	AT2TE23920	.	-	HELITRONY1E	Helitron	RC	121	short	447	high	2238797	chromoarm	1852	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	5872977	5873175	AT2TE23925	.	+	ATREP3	Helitron	RC	198	short	1439	high	2239554	chromoarm	2609	no-CHH	no-CHH	.	.	.	.	.
Chr2	5873175	5874555	AT2TE23930	.	+	HELITRONY3	Helitron	RC	1380	short	1399	high	2239752	chromoarm	2807	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	5876620	5882829	AT2TE23940	.	-	ATGP2	Gypsy	LTR	6209	long	48	low	2243197	chromoarm	6252	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	5882870	5883093	AT2TE23945	.	-	ATHATN1	HAT	DNA	223	short	69	medium	2249447	chromoarm	12502	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5883695	5883767	AT2TE23950	.	-	ATHILA4A	Gypsy	LTR	72	tiny	310	high	2250272	chromoarm	13327	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	5883767	5884068	AT2TE23955	.	-	ATHILA8B	Gypsy	LTR	301	short	78	medium	2250344	chromoarm	13399	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	5884347	5884535	AT2TE23960	.	-	ATHILA7A	Gypsy	LTR	188	short	31	low	2250924	chromoarm	13979	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	5886321	5900126	AT2TE23965	.	-	VANDAL13	MuDR	DNA	13805	long	38	low	2252898	chromoarm	7006	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	5889146,5892872,5893018,5893018,5894292	5889339,5893184,5893141,5893190,5893552	+,+,+,+,-	transcript_id-"d2070776-5990-4707-89bc-6bcbf99a837e|3",transcript_id-"00443f0d-2bdd-4582-87e4-031d4e24d03c|4",transcript_id-"af51aec1-1f03-4879-bf4b-c136606831a2|3",transcript_id-"c086e7c2-d1f7-4c1a-938b-11e4b7e46fd0|7",transcript_id-"b6c228b1-d565-442e-9b65-135c1538ab29|10"
Chr2	5886606	5888004	AT2TE23970	.	+	ATSINE2A	.	SINE	1398	short	33	low	2253183	chromoarm	16238	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	5886602	5888008	+	transcript_id-"9e47781e-2d3d-4432-bb1c-c8dc7f63d465|114"
Chr2	5900577	5900728	AT2TE24030	.	-	ATHILA4C	Gypsy	LTR	151	short	206	high	2267154	chromoarm	6404	no-RdDM	no-CHH	.	.	.	.	.
Chr2	5900867	5904548	AT2TE24035	.	-	ATHILA7	Gypsy	LTR	3681	medium	134	medium	2267444	chromoarm	2584	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	5904548	5904640	AT2TE24040	.	-	ATHILA7	Gypsy	LTR	92	tiny	134	medium	2271125	chromoarm	2492	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	5904640	5905727	AT2TE24045	.	+	ATLINE1_4	L1	LINE	1087	short	102	medium	2271217	chromoarm	1405	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	5906004	5906209	AT2TE24050	.	-	ATMU1	MuDR	DNA	205	short	59	medium	2272581	chromoarm	923	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr2	5917653	5918051	AT2TE24110	.	+	ATLINE1_4	L1	LINE	398	short	102	medium	2284230	chromoarm	1886	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5918853	5919347	AT2TE24115	.	+	ATCOPIA32B	Copia	LTR	494	short	10	low	2285430	chromoarm	2533	no-CHH	no-CHH	.	.	.	.	.
Chr2	5919995	5920822	AT2TE24120	.	+	ATREP15	Helitron	RC	827	short	1003	high	2286572	chromoarm	1058	no-CHH	no-CHH	ExpressedAndAnnotated	5920528,5920528	5921071,5921122	+,+	transcript_id-"673ac752-5732-4998-b406-a14888f097cd|11",transcript_id-"294e550e-1c1d-4b09-86a2-bc526f0ba315|17"
Chr2	5923330	5923456	AT2TE24130	.	+	ATLINE1A	L1	LINE	126	short	289	high	2289907	chromoarm	340	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5923851	5924277	AT2TE24135	.	-	ATCOPIA95	Copia	LTR	426	short	72	medium	2290428	chromoarm	861	no-CHH	no-CHH	.	.	.	.	.
Chr2	5925853	5926014	AT2TE24140	.	-	ATLINE1A	L1	LINE	162	short	289	high	2292429	chromoarm	0	.	.	.	.	.	.	.
Chr2	5931951	5932289	AT2TE24170	.	-	ATMUNX1	MuDR	DNA	338	short	155	medium	2298528	chromoarm	216	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	5934242	5934567	AT2TE24175	.	+	ATLINE1A	L1	LINE	325	short	289	high	2300819	chromoarm	165	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5936650	5936768	AT2TE24185	.	-	RathE1_cons	.	RathE1_cons	118	short	213	high	2303227	chromoarm	279	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5937002	5937135	AT2TE24190	.	-	ATHPOGON3	Pogo	DNA	133	short	118	medium	2303579	chromoarm	631	no-CHH	no-CHH	.	.	.	.	.
Chr2	5937225	5937637	AT2TE24195	.	+	ATLINE1_2	L1	LINE	412	short	41	low	2303802	chromoarm	854	no-CHH	no-CHH	.	.	.	.	.
Chr2	5937667	5938467	AT2TE24200	.	-	HELITRON2	Helitron	RC	800	short	194	medium	2304244	chromoarm	1296	no-CHH	no-CHH	.	.	.	.	.
Chr2	5938467	5938494	AT2TE24205	.	-	HELITRONY3	Helitron	RC	27	tiny	1399	high	2305044	chromoarm	2096	no-CHH	no-CHH	.	.	.	.	.
Chr2	5940206	5941108	AT2TE24210	.	-	ATREP11	Helitron	RC	902	short	841	high	2306783	chromoarm	3835	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5941108	5941526	AT2TE24215	.	+	ATHPOGON3	Pogo	DNA	418	short	118	medium	2307685	chromoarm	4737	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5941659	5942204	AT2TE24220	.	-	HELITRONY1D	Helitron	RC	545	short	756	high	2308236	chromoarm	5288	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5942204	5942387	AT2TE24225	.	-	ATREP1	Helitron	RC	183	short	498	high	2308781	chromoarm	5833	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5942387	5943522	AT2TE24230	.	+	HELITRONY3	Helitron	RC	1135	short	1399	high	2308964	chromoarm	6016	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5943522	5943652	AT2TE24235	.	-	META1	Copia	LTR	130	short	138	medium	2310099	chromoarm	7151	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	5944430	5944540	AT2TE24240	.	+	ATHATN8	HAT	DNA	110	short	15	low	2311007	chromoarm	7464	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5944594	5945744	AT2TE24245	.	+	HELITRON1	Helitron	RC	1150	short	130	medium	2311171	chromoarm	6260	PolIV-RdDM	no-CHH	ExpressedAndAnnotated	5945526	5944734	-	transcript_id-"29fd4993-a3ea-425e-89a5-e55853829bd2|6"
Chr2	5944942	5945391	AT2TE24250	.	+	HELITRON1	Helitron	RC	449	short	130	medium	2311519	chromoarm	6613	PolIV-RdDM	no-CHH	ExpressedAndAnnotated	5945526	5944734	-	transcript_id-"29fd4993-a3ea-425e-89a5-e55853829bd2|6"
Chr2	5948852	5948872	AT2TE24260	.	-	HELITRON4	Helitron	RC	20	tiny	199	medium	2315429	chromoarm	3132	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	5948872	5949792	AT2TE24265	.	+	ATREP10D	Helitron	RC	920	short	1295	high	2315449	chromoarm	2212	PolIV-and-RDR6-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	5949792	5950639	AT2TE24270	.	-	ARNOLDY1	MuDR	DNA	847	short	237	high	2316369	chromoarm	1365	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5950639	5950819	AT2TE24275	.	+	HELITRONY3	Helitron	RC	180	short	1399	high	2317216	chromoarm	1185	no-CHH	no-CHH	.	.	.	.	.
Chr2	5951099	5951257	AT2TE24280	.	+	HELITRON4	Helitron	RC	158	short	199	medium	2317676	chromoarm	747	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	5960178	5960274	AT2TE24330	.	-	HELITRONY3	Helitron	RC	96	tiny	1399	high	2326755	chromoarm	163	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5960274	5975813	AT2TE24335	.	-	ARNOLD2	MuDR	DNA	15539	long	68	medium	2326851	chromoarm	259	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	5966346,5966356,5966359	5969062,5969375,5968685	+,+,+	transcript_id-"6d7ad57b-c510-44fd-9606-b68863fe1dae|6",transcript_id-"b94451e2-bdc2-4b0d-aa4a-01cba02e3768|6",transcript_id-"3fb2feaf-8839-4e6a-8a36-ec1b4b2a82c9|13"
Chr2	5975826	5976218	AT2TE24340	.	-	ATLINE1A	L1	LINE	393	short	289	high	2342402	chromoarm	246	.	.	.	.	.	.	.
Chr2	5982003	5984954	AT2TE24370	.	-	ATIS112A	Harbinger	DNA	2951	medium	173	medium	2348580	chromoarm	104	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	5983827	5984023	AT2TE24375	.	-	ATIS112A	Harbinger	DNA	196	short	173	medium	2350404	chromoarm	1928	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	5984954	5984985	AT2TE24380	.	+	ATHILA6A	Gypsy	LTR	31	tiny	247	high	2351531	chromoarm	3055	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	5984985	5996552	AT2TE24385	.	+	ATHILA6A	Gypsy	LTR	11567	long	247	high	2351562	chromoarm	3086	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	5994884	5995537	+	transcript_id-"43268a23-68c9-4911-84b1-7ac907eed7bc|3"
Chr2	5996552	5997248	AT2TE24390	.	-	ATIS112A	Harbinger	DNA	696	short	173	medium	2363129	chromoarm	14653	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	5997261	5997429	AT2TE24395	.	-	RathE1_cons	.	RathE1_cons	168	short	213	high	2363838	chromoarm	15362	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	5997520	5998051	AT2TE24400	.	+	ATIS112A	Harbinger	DNA	531	short	173	medium	2364097	chromoarm	15621	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	5998869	5999322	AT2TE24405	.	+	ATHILA4B_LTR	Gypsy	LTR	453	short	143	medium	2365446	chromoarm	16970	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	5999322	6001312	AT2TE24410	.	-	ATHILA	Gypsy	LTR	1990	short	198	medium	2365899	chromoarm	15402	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	6001939	6003836	AT2TE24415	.	-	ATDNAI27T9C	MuDR	DNA	1897	short	108	medium	2368516	chromoarm	12878	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6003836	6004804	AT2TE24420	.	-	ATREP11	Helitron	RC	968	short	841	high	2370413	chromoarm	11910	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6004804	6004967	AT2TE24425	.	-	ATDNAI27T9C	MuDR	DNA	163	short	108	medium	2371381	chromoarm	11747	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6006127	6006220	AT2TE24430	.	-	HELITRONY1D	Helitron	RC	93	tiny	756	high	2372704	chromoarm	10494	PolIV-RdDM	RDR6-RdDM	.	.	.	.	.
Chr2	6006490	6007031	AT2TE24435	.	+	ATHILA8B	Gypsy	LTR	541	short	78	medium	2373067	chromoarm	9683	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	6007105	6007255	AT2TE24440	.	+	ATHILA4	Gypsy	LTR	150	short	250	high	2373682	chromoarm	9459	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	6007256	6008495	AT2TE24445	.	-	ATHILA4	Gypsy	LTR	1239	short	250	high	2373833	chromoarm	8219	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6008495	6009479	AT2TE24450	.	+	ATHILA4B_LTR	Gypsy	LTR	984	short	143	medium	2375072	chromoarm	7235	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6009651	6009673	AT2TE24455	.	-	ATCOPIA97	Copia	LTR	22	tiny	10	low	2376228	chromoarm	7041	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	6009673	6012673	AT2TE24460	.	-	ATCOPIA45	Copia	LTR	3000	medium	20	low	2376250	chromoarm	4041	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr2	6013681	6014631	AT2TE24465	.	-	TSCL	.	LINE?	950	short	81	medium	2380258	chromoarm	2083	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	6014642	6014962	AT2TE24470	.	-	TSCL	.	LINE?	320	short	81	medium	2381219	chromoarm	1752	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	6014720	6014945	AT2TE24475	.	-	TSCL	.	LINE?	225	short	81	medium	2381297	chromoarm	1769	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	6017456	6018063	AT2TE24485	.	+	ATREP9	Helitron	RC	607	short	201	high	2384033	chromoarm	646	no-CHH	no-CHH	.	.	.	.	.
Chr2	6019283	6020243	AT2TE24490	.	-	ATREP3	Helitron	RC	960	short	1439	high	2385860	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	6020243	6020341	AT2TE24495	.	+	HELITRONY1B	Helitron	RC	98	tiny	414	high	2386820	chromoarm	0	no-CHH	no-RdDM	.	.	.	.	.
Chr2	6020983	6021611	AT2TE24500	.	+	ATREP15	Helitron	RC	628	short	1003	high	2387560	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	6021611	6021679	AT2TE24505	.	-	ATLINE1_3A	L1	LINE	68	tiny	160	medium	2388188	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	6023846	6023867	AT2TE24515	.	-	ATCOPIA77	Copia	LTR	21	tiny	6	low	2390423	chromoarm	261	no-CHH	no-CHH	.	.	.	.	.
Chr2	6023867	6027026	AT2TE24520	.	-	ATCOPIA77	Copia	LTR	3159	medium	6	low	2390444	chromoarm	282	no-CHH	no-CHH	ExpressedAndAnnotated	6025886	6023891	-	transcript_id-"a1577c92-e917-4b32-b878-b73eb1caee25|3"
Chr2	6027026	6031164	AT2TE24525	.	-	ATENSPM1A	En-Spm	DNA	4138	medium	77	medium	2393603	chromoarm	3307	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	6030249,6030249,6030249,6030249,6030249,6030249	6027393,6027395,6027397,6027400,6028218,6028230	-,-,-,-,-,-	transcript_id-"7eeccbdd-bc9c-4203-8f8a-4241ccc6f961|19",transcript_id-"f7e681ba-6dc1-4042-b155-ae1c3a45355d|64",transcript_id-"2ac4a7d4-d3c6-4dad-9ccd-3b7468495da8|5",transcript_id-"ad893bdb-b434-4f98-991e-405ce4cdf11c|5",transcript_id-"c8c4300c-3963-424f-a99d-d0a497985760|9",transcript_id-"84913797-720e-4c8f-b36e-4eea61a5844e|16"
Chr2	6031165	6032907	AT2TE24530	.	-	ATCOPIA77	Copia	LTR	1742	short	6	low	2397742	chromoarm	1564	no-CHH	no-CHH	.	.	.	.	.
Chr2	6033196	6033359	AT2TE24535	.	+	ATLINE1A	L1	LINE	163	short	289	high	2399773	chromoarm	1112	no-CHH	no-CHH	.	.	.	.	.
Chr2	6034856	6034963	AT2TE24540	.	-	ATLINE1_3A	L1	LINE	107	short	160	medium	2401433	chromoarm	148	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	6044027	6044310	AT2TE24590	.	-	LIMPET1	MuDR	DNA	284	short	116	medium	2410603	chromoarm	157	.	.	LowExpressed	.	.	.	.
Chr2	6044319	6044346	AT2TE24595	.	+	LIMPET1	MuDR	DNA	27	tiny	116	medium	2410896	chromoarm	450	PolIV-and-RDR6-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	6044346	6045023	AT2TE24600	.	+	LIMPET1	MuDR	DNA	677	short	116	medium	2410923	chromoarm	477	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	6045023	6045423	AT2TE24605	.	+	LIMPET1	MuDR	DNA	400	short	116	medium	2411600	chromoarm	155	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	6045423	6046666	AT2TE24610	.	+	VANDAL5A	MuDR	DNA	1243	short	56	medium	2412000	chromoarm	0	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	6046688	6046890	AT2TE24615	.	+	VANDAL4	MuDR	DNA	202	short	102	medium	2413265	chromoarm	643	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	6047277	6047450	AT2TE24620	.	+	ATDNAI27T9B	MuDR	DNA	173	short	43	low	2413854	chromoarm	1232	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	6047771	6048342	AT2TE24625	.	-	ATDNA2T9A	MuDR	DNA	571	short	48	low	2414348	chromoarm	1585	no-CHH	no-CHH	.	.	.	.	.
Chr2	6048867	6048967	AT2TE24630	.	+	ATREP11	Helitron	RC	100	short	841	high	2415444	chromoarm	960	no-RdDM	no-CHH	.	.	.	.	.
Chr2	6049005	6049759	AT2TE24635	.	+	TA11	L1	LINE	754	short	157	medium	2415582	chromoarm	168	no-CHH	no-CHH	.	.	.	.	.
Chr2	6051702	6052327	AT2TE24640	.	+	VANDAL2	MuDR	DNA	625	short	43	low	2418279	chromoarm	284	no-CHH	no-CHH	.	.	.	.	.
Chr2	6051990	6052052	AT2TE24645	.	+	VANDAL1N1	MuDR	DNA	62	tiny	52	medium	2418567	chromoarm	559	no-CHH	no-CHH	.	.	.	.	.
Chr2	6053173	6053448	AT2TE24650	.	-	ATLINE2	L1	LINE	275	short	138	medium	2419750	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	6054085	6054554	AT2TE24655	.	-	ATREP11	Helitron	RC	470	short	841	high	2420661	chromoarm	584	.	.	.	.	.	.	.
Chr2	6058951	6059218	AT2TE24670	.	+	HELITRONY3	Helitron	RC	267	short	1399	high	2425528	chromoarm	451	no-CHH	no-CHH	.	.	.	.	.
Chr2	6059218	6059565	AT2TE24675	.	-	HELITRONY2	Helitron	RC	347	short	198	medium	2425795	chromoarm	718	no-CHH	no-CHH	.	.	.	.	.
Chr2	6059587	6070822	AT2TE24680	.	-	HELITRON2	Helitron	RC	11235	long	194	medium	2426164	chromoarm	1087	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	6060797	6060841	AT2TE24685	.	-	HELITRON2	Helitron	RC	44	tiny	194	medium	2427374	chromoarm	2297	RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr2	6070822	6070845	AT2TE24730	.	+	VANDAL7	MuDR	DNA	23	tiny	36	low	2437399	chromoarm	12322	DCL3-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	6070845	6082356	AT2TE24735	.	+	VANDAL7	MuDR	DNA	11511	long	36	low	2437422	chromoarm	6012	no-RdDM	no-RdDM	ExpressedAndAnnotated	6074094,6074094,6074168,6076036,6076088,6076088,6077843,6078062,6078093	6075478,6075483,6075469,6076965,6076977,6077013,6077141,6079104,6079034	+,+,+,+,+,+,-,+,+	transcript_id-"bc147d6b-fc10-4094-b567-5009c9abf4f0|8",transcript_id-"14d7eb16-90b3-46fa-ab6f-54879c7f6fbd|7",transcript_id-"41070801-9947-4fa2-97c9-b9f9c65145f3|5",transcript_id-"1e39a485-841c-4bfc-b916-2282310e4dbb|12",transcript_id-"18ca53e3-046a-40fb-9cb3-df995a06bfa2|5",transcript_id-"45d345ba-138f-4ba3-b6ab-40241bfb9442|7",transcript_id-"2a90b44e-e96d-48a0-8f6d-ece56b00daeb|158",transcript_id-"62906a7c-7823-42e5-9419-463dd9395b99|4",transcript_id-"93c6f8e7-67cc-4022-96cc-5a3d028e1f09|4"
Chr2	6083638	6083671	AT2TE24740	.	-	ATREP3	Helitron	RC	33	tiny	1439	high	2450215	chromoarm	4697	no-CHH	no-RdDM	.	.	.	.	.
Chr2	6083671	6084369	AT2TE24745	.	+	ATREP3	Helitron	RC	698	short	1439	high	2450248	chromoarm	3999	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	6084369	6084726	AT2TE24750	.	-	ATHATN7	HAT	DNA	357	short	71	medium	2450946	chromoarm	3642	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6084726	6084947	AT2TE24755	.	+	ATREP4	Helitron	RC	221	short	832	high	2451303	chromoarm	3421	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	6084947	6087762	AT2TE24760	.	-	ATREP10D	Helitron	RC	2815	medium	1295	high	2451524	chromoarm	606	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6087762	6088228	AT2TE24765	.	+	ATREP3	Helitron	RC	466	short	1439	high	2454339	chromoarm	140	no-CHH	no-CHH	.	.	.	.	.
Chr2	6088228	6088407	AT2TE24770	.	+	ATREP10D	Helitron	RC	179	short	1295	high	2454805	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	6089280	6089547	AT2TE24775	.	+	BRODYAGA1A	MuDR	DNA	267	short	586	high	2455857	chromoarm	542	no-CHH	no-CHH	.	.	.	.	.
Chr2	6095106	6096975	AT2TE24800	.	+	ATGP7	Gypsy	LTR	1869	short	47	low	2461683	chromoarm	6368	no-RdDM	no-CHH	.	.	.	.	.
Chr2	6096975	6097103	AT2TE24805	.	+	ATGP6	Gypsy	LTR	128	short	25	low	2463552	chromoarm	7765	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6099334	6099361	AT2TE24815	.	+	ATREP4	Helitron	RC	27	tiny	832	high	2465911	chromoarm	5507	no-CHH	no-CHH	.	.	.	.	.
Chr2	6099361	6103251	AT2TE24820	.	+	ATREP3	Helitron	RC	3890	medium	1439	high	2465938	chromoarm	1617	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6101521	6101618	AT2TE24825	.	+	ATREP3	Helitron	RC	97	tiny	1439	high	2468098	chromoarm	3250	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr2	6101618	6101770	AT2TE24830	.	+	ATREP10D	Helitron	RC	152	short	1295	high	2468195	chromoarm	3098	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6101771	6102380	AT2TE24835	.	-	ATHATN7	HAT	DNA	609	short	71	medium	2468348	chromoarm	2488	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6103711	6104008	AT2TE24840	.	-	ATLINE1_5	L1	LINE	297	short	91	medium	2470288	chromoarm	860	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	6105544	6105583	AT2TE24845	.	+	ATDNAI27T9C	MuDR	DNA	39	tiny	108	medium	2472121	chromoarm	313	no-CHH	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	6105583	6108510	AT2TE24850	.	-	ATLANTYS2	Gypsy	LTR	2927	medium	179	medium	2472160	chromoarm	352	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	6110679	6113207	AT2TE24860	.	+	ATHILA8A	Gypsy	LTR	2528	medium	97	medium	2477256	chromoarm	0	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	6114125	6114806	AT2TE24865	.	+	TAT1_ATH	Gypsy	LTR	681	short	87	medium	2480702	chromoarm	2207	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr2	6115220	6115787	AT2TE24870	.	+	ATLANTYS1	Gypsy	LTR	567	short	153	medium	2481797	chromoarm	3302	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr2	6115787	6115891	AT2TE24875	.	+	ATLANTYS2	Gypsy	LTR	104	short	179	medium	2482364	chromoarm	3869	no-RdDM	no-CHH	.	.	.	.	.
Chr2	6115891	6119142	AT2TE24880	.	+	ATLANTYS1	Gypsy	LTR	3251	medium	153	medium	2482468	chromoarm	3973	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr2	6119142	6119255	AT2TE24885	.	+	ATLANTYS2	Gypsy	LTR	113	short	179	medium	2485719	chromoarm	7224	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6123502	6123748	AT2TE24900	.	+	ATLANTYS1	Gypsy	LTR	246	short	153	medium	2490079	chromoarm	11584	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	6124737	6126659	AT2TE24905	.	+	ATHILA8A	Gypsy	LTR	1922	short	97	medium	2491314	chromoarm	12819	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	6126675	6127148	AT2TE24910	.	-	ATHILA4A	Gypsy	LTR	473	short	310	high	2493252	chromoarm	14757	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	6127148	6127656	AT2TE24915	.	-	ATHILA4	Gypsy	LTR	508	short	250	high	2493725	chromoarm	15230	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	6127656	6128607	AT2TE24920	.	-	ATHILA4D_LTR	Gypsy	LTR	951	short	106	medium	2494233	chromoarm	14465	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	6128607	6128649	AT2TE24925	.	-	ATHILA4A	Gypsy	LTR	42	tiny	310	high	2495184	chromoarm	14423	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	6128779	6128813	AT2TE24930	.	+	AT9NMU1	MuDR	DNA	34	tiny	45	low	2495356	chromoarm	14259	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	6128814	6130916	AT2TE24935	.	+	AT9MU1	MuDR	DNA	2102	medium	10	low	2495391	chromoarm	12156	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6130916	6131010	AT2TE24940	.	-	AT9NMU1	MuDR	DNA	94	tiny	45	low	2497493	chromoarm	12062	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr2	6132655	6132817	AT2TE24945	.	-	VANDAL22	MuDR	DNA	162	short	48	low	2499232	chromoarm	10255	no-CHH	no-CHH	.	.	.	.	.
Chr2	6133921	6134198	AT2TE24950	.	+	ATLINE2	L1	LINE	277	short	138	medium	2500498	chromoarm	8874	no-RdDM	no-CHH	.	.	.	.	.
Chr2	6134198	6136291	AT2TE24955	.	+	ATLINEIII	L1	LINE	2093	medium	196	medium	2500775	chromoarm	6781	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr2	6136291	6139070	AT2TE24960	.	+	ATLINE2	L1	LINE	2779	medium	138	medium	2502868	chromoarm	4002	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	6139498	6141111	AT2TE24965	.	-	ATDNAI27T9B	MuDR	DNA	1613	short	43	low	2506075	chromoarm	1961	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	6141424	6141575	AT2TE24970	.	-	ATDNAI27T9A	MuDR	DNA	151	short	116	medium	2508001	chromoarm	1497	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	6141575	6141929	AT2TE24975	.	-	HELITRONY3	Helitron	RC	354	short	1399	high	2508152	chromoarm	1143	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6141929	6142761	AT2TE24980	.	+	ATREP1	Helitron	RC	832	short	498	high	2508506	chromoarm	311	no-CHH	no-CHH	.	.	.	.	.
Chr2	6142761	6142816	AT2TE24985	.	-	ATREP4	Helitron	RC	55	tiny	832	high	2509338	chromoarm	256	no-CHH	no-CHH	.	.	.	.	.
Chr2	6142816	6142983	AT2TE24990	.	-	ATREP5	Helitron	RC	167	short	624	high	2509393	chromoarm	89	no-CHH	no-CHH	.	.	.	.	.
Chr2	6142983	6143023	AT2TE24995	.	-	ATREP15	Helitron	RC	40	tiny	1003	high	2509560	chromoarm	49	no-CHH	no-CHH	.	.	.	.	.
Chr2	6144694	6144782	AT2TE25000	.	+	RathE1_cons	.	RathE1_cons	89	tiny	213	high	2511270	chromoarm	0	.	.	.	.	.	.	.
Chr2	6145860	6146006	AT2TE25005	.	+	RathE1_cons	.	RathE1_cons	146	short	213	high	2512437	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6147653	6148083	AT2TE25010	.	-	HELITRON4	Helitron	RC	430	short	199	medium	2514230	chromoarm	234	no-CHH	no-CHH	.	.	.	.	.
Chr2	6148526	6148549	AT2TE25015	.	+	HELITRON1	Helitron	RC	23	tiny	130	medium	2515103	chromoarm	1107	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6148549	6162030	AT2TE25020	.	+	HELITRON1	Helitron	RC	13481	long	130	medium	2515126	chromoarm	0	no-RdDM	no-RdDM	ExpressedAndAnnotated	6154590	6155317	+	transcript_id-"e16e95f4-1621-4416-916e-bc80a8b7b3d8|4"
Chr2	6162030	6162154	AT2TE25025	.	+	HELITRON5	Helitron	RC	124	short	56	medium	2528607	chromoarm	4781	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	6162808	6162958	AT2TE25030	.	-	ATREP15	Helitron	RC	150	short	1003	high	2529385	chromoarm	3977	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	6162958	6163580	AT2TE25035	.	+	ATREP3	Helitron	RC	622	short	1439	high	2529535	chromoarm	3355	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	6163580	6163601	AT2TE25040	.	+	HELITRONY1C	Helitron	RC	21	tiny	120	medium	2530157	chromoarm	3334	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	6166373	6166552	AT2TE25050	.	-	HELITRON4	Helitron	RC	179	short	199	medium	2532950	chromoarm	383	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	6168986	6169013	AT2TE25060	.	-	ATREP1	Helitron	RC	27	tiny	498	high	2535563	chromoarm	1007	no-CHH	no-CHH	.	.	.	.	.
Chr2	6169013	6169047	AT2TE25065	.	+	ARNOLDY2	MuDR	DNA	34	tiny	288	high	2535590	chromoarm	1034	no-CHH	no-CHH	.	.	.	.	.
Chr2	6169047	6170917	AT2TE25070	.	+	ARNOLDY1	MuDR	DNA	1870	short	237	high	2535624	chromoarm	215	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6170917	6170972	AT2TE25075	.	+	ARNOLDY2	MuDR	DNA	55	tiny	288	high	2537494	chromoarm	160	no-CHH	no-RdDM	.	.	.	.	.
Chr2	6172523	6172686	AT2TE25080	.	-	RathE1_cons	.	RathE1_cons	163	short	213	high	2539100	chromoarm	0	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6173603	6173701	AT2TE25085	.	-	RathE1_cons	.	RathE1_cons	98	tiny	213	high	2540180	chromoarm	0	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	6175051	6175742	AT2TE25090	.	-	ATREP15	Helitron	RC	691	short	1003	high	2541628	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	6176921	6178229	AT2TE25095	.	+	ATHILA4	Gypsy	LTR	1308	short	250	high	2543498	chromoarm	1869	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	6179750	6179793	AT2TE25100	.	+	ATHILA4C	Gypsy	LTR	43	tiny	206	high	2546327	chromoarm	2568	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	6179793	6179826	AT2TE25105	.	+	ATHILA4D_LTR	Gypsy	LTR	33	tiny	106	medium	2546370	chromoarm	2535	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	6179826	6180959	AT2TE25110	.	+	ATHILA4	Gypsy	LTR	1133	short	250	high	2546403	chromoarm	1402	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6180978	6181397	AT2TE25115	.	-	ATCOPIA49	Copia	LTR	419	short	34	low	2547555	chromoarm	964	no-CHH	no-CHH	.	.	.	.	.
Chr2	6187174	6187334	AT2TE25140	.	+	TAG3N1	HAT	DNA	160	short	97	medium	2553751	chromoarm	149	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	6191465	6191987	AT2TE25160	.	+	ATREP15	Helitron	RC	522	short	1003	high	2558042	chromoarm	1328	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr2	6192080	6192469	AT2TE25165	.	+	ATCOPIA65	Copia	LTR	389	short	34	low	2558657	chromoarm	1943	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	6192469	6192502	AT2TE25170	.	+	ATCOPIA64	Copia	LTR	33	tiny	13	low	2559046	chromoarm	2332	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6193326	6193365	AT2TE25175	.	+	ATCOPIA65	Copia	LTR	39	tiny	34	low	2559903	chromoarm	3189	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	6193365	6193444	AT2TE25180	.	+	ATGP5	Gypsy	LTR	79	tiny	86	medium	2559942	chromoarm	3228	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr2	6193444	6194223	AT2TE25185	.	+	ATGP5	Gypsy	LTR	779	short	86	medium	2560021	chromoarm	3307	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6194228	6194954	AT2TE25190	.	+	ATCOPIA40	Copia	LTR	726	short	6	low	2560805	chromoarm	2967	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr2	6197416	6197742	AT2TE25200	.	+	ATREP5	Helitron	RC	326	short	624	high	2563993	chromoarm	179	no-RdDM	no-CHH	.	.	.	.	.
Chr2	6199299	6199394	AT2TE25205	.	+	HELITRONY1E	Helitron	RC	95	tiny	447	high	2565876	chromoarm	0	no-RdDM	no-CHH	.	.	.	.	.
Chr2	6199394	6199524	AT2TE25210	.	-	ATREP10D	Helitron	RC	130	short	1295	high	2565971	chromoarm	4	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	6199524	6201347	AT2TE25215	.	-	ATREP15	Helitron	RC	1823	short	1003	high	2566101	chromoarm	134	no-CHH	no-CHH	.	.	.	.	.
Chr2	6201347	6201468	AT2TE25220	.	+	ATREP10D	Helitron	RC	121	short	1295	high	2567924	chromoarm	1957	no-CHH	no-CHH	.	.	.	.	.
Chr2	6201468	6201528	AT2TE25225	.	-	ATREP15	Helitron	RC	60	tiny	1003	high	2568045	chromoarm	2078	no-CHH	no-CHH	.	.	.	.	.
Chr2	6201528	6201668	AT2TE25230	.	+	HELITRONY3	Helitron	RC	140	short	1399	high	2568105	chromoarm	2138	no-CHH	no-CHH	.	.	.	.	.
Chr2	6201880	6202008	AT2TE25235	.	+	HELITRONY1A	Helitron	RC	128	short	271	high	2568457	chromoarm	2490	no-CHH	no-CHH	.	.	.	.	.
Chr2	6202008	6202732	AT2TE25240	.	+	BRODYAGA2	MuDR	DNA	724	short	525	high	2568585	chromoarm	2618	no-CHH	no-CHH	.	.	.	.	.
Chr2	6202732	6202843	AT2TE25245	.	+	HELITRONY1A	Helitron	RC	111	short	271	high	2569309	chromoarm	3342	no-CHH	no-CHH	.	.	.	.	.
Chr2	6204758	6205620	AT2TE25250	.	+	ARNOLDY2	MuDR	DNA	862	short	288	high	2571335	chromoarm	5368	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	6205620	6206184	AT2TE25255	.	-	HELITRONY1D	Helitron	RC	564	short	756	high	2572197	chromoarm	6230	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6206184	6208507	AT2TE25260	.	+	HELITRONY1D	Helitron	RC	2323	medium	756	high	2572761	chromoarm	5642	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6214709	6214915	AT2TE25290	.	+	ATREP5	Helitron	RC	206	short	624	high	2581286	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	6215134	6215240	AT2TE25295	.	-	ATHILA2	Gypsy	LTR	106	short	413	high	2581711	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	6215790	6216279	AT2TE25300	.	-	VANDAL17	MuDR	DNA	489	short	178	medium	2582367	chromoarm	620	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6216279	6216325	AT2TE25305	.	+	ATREP10B	Helitron	RC	46	tiny	491	high	2582856	chromoarm	1109	no-CHH	no-CHH	.	.	.	.	.
Chr2	6216855	6217049	AT2TE25310	.	+	ATTIRX1A	.	DNA	194	short	63	medium	2583432	chromoarm	1685	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	6217073	6217198	AT2TE25315	.	-	ARNOLD1	MuDR	DNA	126	short	39	low	2583649	chromoarm	1902	.	.	LowExpressed	.	.	.	.
Chr2	6217198	6217671	AT2TE25320	.	-	ARNOLD2	MuDR	DNA	473	short	68	medium	2583775	chromoarm	2028	PolIV-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	6217218,6217232	6217714,6217800	+,+	transcript_id-"809b186b-32b0-4a79-b7c2-8ec319d99bd7|5",transcript_id-"112c2d45-b5fc-4b9e-bfe7-9cc6435a6e76|7"
Chr2	6217671	6217709	AT2TE25325	.	-	ARNOLD2	MuDR	DNA	38	tiny	68	medium	2584248	chromoarm	2501	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	6218309	6218335	AT2TE25330	.	+	ATCOPIA65	Copia	LTR	26	tiny	34	low	2584886	chromoarm	3139	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6218335	6218658	AT2TE25335	.	+	ATCOPIA64	Copia	LTR	323	short	13	low	2584912	chromoarm	3165	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6218659	6218721	AT2TE25340	.	+	ATCOPIA54	Copia	LTR	62	tiny	18	low	2585236	chromoarm	3489	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6221516	6221710	AT2TE25350	.	-	ATMU3	MuDR	DNA	194	short	15	low	2588093	chromoarm	3992	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	6221710	6222806	AT2TE25355	.	-	ATMU5	MuDR	DNA	1096	short	24	low	2588287	chromoarm	2896	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	6224272,6224263	6221061,6222215	-,-	transcript_id-"00ade08a-2c1d-472f-9a8f-5e202e2db036|5",transcript_id-"7e8d66e6-d2a6-4886-b3ca-606912658431|3"
Chr2	6221751	6222788	AT2TE25360	.	-	ATMU5	MuDR	DNA	1037	short	24	low	2588328	chromoarm	2914	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	6224272,6224263	6221061,6222215	-,-	transcript_id-"00ade08a-2c1d-472f-9a8f-5e202e2db036|5",transcript_id-"7e8d66e6-d2a6-4886-b3ca-606912658431|3"
Chr2	6222998	6223380	AT2TE25365	.	-	ATMU1	MuDR	DNA	382	short	59	medium	2589575	chromoarm	2322	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	6224263,6224263	6222215,6222799	-,-	transcript_id-"7e8d66e6-d2a6-4886-b3ca-606912658431|3",transcript_id-"edc72d6f-7e89-42af-8d0a-fa0c66dc6a60|4"
Chr2	6228311	6228479	AT2TE25390	.	+	VANDAL9	MuDR	DNA	168	short	43	low	2594888	chromoarm	2123	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	6228479	6229325	AT2TE25395	.	+	VANDAL12	MuDR	DNA	846	short	37	low	2595056	chromoarm	2291	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	6229356	6232388	AT2TE25400	.	+	VANDAL9	MuDR	DNA	3032	medium	43	low	2595933	chromoarm	3168	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	6232598	6232726	AT2TE25405	.	+	VANDAL10	MuDR	DNA	128	short	13	low	2599175	chromoarm	6410	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	6232726	6233577	AT2TE25410	.	+	VANDAL11	MuDR	DNA	851	short	18	low	2599303	chromoarm	6538	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	6233581	6233736	AT2TE25415	.	+	VANDAL9	MuDR	DNA	155	short	43	low	2600158	chromoarm	7393	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	6236325	6236684	AT2TE25425	.	-	HELITRONY1D	Helitron	RC	359	short	756	high	2602902	chromoarm	5259	no-CHH	no-CHH	.	.	.	.	.
Chr2	6237868	6238487	AT2TE25430	.	+	ATCOPIA28	Copia	LTR	619	short	81	medium	2604445	chromoarm	3456	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	6239849	6240087	AT2TE25435	.	+	HELITRONY1D	Helitron	RC	238	short	756	high	2606426	chromoarm	1856	no-CHH	no-CHH	.	.	.	.	.
Chr2	6240938	6241896	AT2TE25440	.	-	ATREP3	Helitron	RC	958	short	1439	high	2607515	chromoarm	47	no-CHH	no-CHH	.	.	.	.	.
Chr2	6243335	6243443	AT2TE25445	.	-	ATREP4	Helitron	RC	108	short	832	high	2609912	chromoarm	906	no-CHH	RDR6-RdDM	.	.	.	.	.
Chr2	6243443	6243951	AT2TE25450	.	-	ATDNA2T9C	MuDR	DNA	508	short	242	high	2610020	chromoarm	937	no-CHH	no-CHH	.	.	.	.	.
Chr2	6247742	6247811	AT2TE25460	.	+	ATREP10D	Helitron	RC	69	tiny	1295	high	2614319	chromoarm	1732	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	6247811	6248272	AT2TE25465	.	-	ATREP11	Helitron	RC	461	short	841	high	2614388	chromoarm	1801	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	6248272	6250339	AT2TE25470	.	-	ATREP8	Helitron	RC	2067	medium	75	medium	2614849	chromoarm	2262	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6249187	6249657	AT2TE25475	.	-	ATREP10B	Helitron	RC	470	short	491	high	2615764	chromoarm	3177	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6250339	6250409	AT2TE25480	.	-	ATREP8	Helitron	RC	70	tiny	75	medium	2616916	chromoarm	4118	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6250700	6251210	AT2TE25485	.	+	ATREP15	Helitron	RC	510	short	1003	high	2617277	chromoarm	3317	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6251318	6253755	AT2TE25490	.	+	ATLINE1A	L1	LINE	2437	medium	289	high	2617895	chromoarm	772	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	6252017	6252965	AT2TE25495	.	-	ATENSPM1	En-Spm	DNA	948	short	30	low	2618594	chromoarm	1562	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	6255632	6255656	AT2TE25505	.	+	ATHILA4B_LTR	Gypsy	LTR	24	tiny	143	medium	2622209	chromoarm	919	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	6255656	6256501	AT2TE25510	.	+	ATHILA4D_LTR	Gypsy	LTR	845	short	106	medium	2622233	chromoarm	943	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	6258401	6259080	AT2TE25515	.	+	ATGP3	Gypsy	LTR	679	short	60	medium	2624978	chromoarm	3688	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr2	6259434	6260598	AT2TE25520	.	+	ATGP3	Gypsy	LTR	1164	short	60	medium	2626011	chromoarm	4721	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	6261349	6262119	AT2TE25525	.	+	ATREP7	Helitron	RC	770	short	164	medium	2627926	chromoarm	6636	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6262530	6263222	AT2TE25530	.	+	ATREP3	Helitron	RC	692	short	1439	high	2629107	chromoarm	7817	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	6263222	6263278	AT2TE25535	.	-	ATGP1	Gypsy	LTR	56	tiny	144	medium	2629799	chromoarm	8509	PolIV-and-RDR6-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	6263278	6271099	AT2TE25540	.	-	ATGP1	Gypsy	LTR	7821	long	144	medium	2629855	chromoarm	1406	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	6264318,6264318,6264318,6264318,6270975,6265779	6263125,6263230,6263366,6263366,6263379,6265203	-,-,-,-,-,-	transcript_id-"4909e1d5-c33f-47cd-ab91-707fb5707184|4",transcript_id-"8bfd40f6-cc69-47ea-86eb-076b0e1ee6f9|8",transcript_id-"1b69039c-0af8-4c75-8423-c1e24cfe7a30|25",transcript_id-"2d94693f-05c1-4a85-98ad-0f4bc04a2ca0|215",transcript_id-"9907f8a4-9535-4818-a324-5c035a7f6d59|3",transcript_id-"aeb4301c-7153-4279-af9c-1ad6b28cc0e4|5"
Chr2	6271164	6271289	AT2TE25545	.	-	ARNOLDY2	MuDR	DNA	125	short	288	high	2637741	chromoarm	1216	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6271290	6271353	AT2TE25550	.	-	ARNOLDY1	MuDR	DNA	63	tiny	237	high	2637867	chromoarm	1152	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6271897	6272207	AT2TE25555	.	+	HELITRONY1A	Helitron	RC	310	short	271	high	2638474	chromoarm	298	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	6274079	6274101	AT2TE25560	.	-	ATREP10B	Helitron	RC	22	tiny	491	high	2640656	chromoarm	504	no-CHH	no-CHH	.	.	.	.	.
Chr2	6274101	6275053	AT2TE25565	.	+	ATREP3	Helitron	RC	952	short	1439	high	2640678	chromoarm	0	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	6286122	6287164	AT2TE25620	.	+	ATREP5	Helitron	RC	1042	short	624	high	2652699	chromoarm	110	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	6287164	6288181	AT2TE25625	.	+	ATENSPM3	En-Spm	DNA	1017	short	98	medium	2653741	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	6288181	6288854	AT2TE25630	.	-	ATREP13	Helitron	RC	673	short	106	medium	2654758	chromoarm	410	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6288854	6289111	AT2TE25635	.	-	BRODYAGA2	MuDR	DNA	257	short	525	high	2655431	chromoarm	1083	no-CHH	no-CHH	.	.	.	.	.
Chr2	6289111	6289134	AT2TE25640	.	+	ATREP11	Helitron	RC	23	tiny	841	high	2655688	chromoarm	1340	no-CHH	no-CHH	.	.	.	.	.
Chr2	6290927	6291890	AT2TE25645	.	-	ATREP5	Helitron	RC	963	short	624	high	2657504	chromoarm	575	no-CHH	no-CHH	.	.	.	.	.
Chr2	6292514	6292566	AT2TE25650	.	-	HELITRONY1B	Helitron	RC	52	tiny	414	high	2659091	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	6292566	6292610	AT2TE25655	.	+	ATREP19	.	DNA	44	tiny	189	medium	2659143	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	6292610	6293394	AT2TE25660	.	+	ATREP1	Helitron	RC	784	short	498	high	2659187	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	6295020	6295102	AT2TE25665	.	+	ATCOPIA22	Copia	LTR	82	tiny	14	low	2661597	chromoarm	0	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	6295470	6295564	AT2TE25670	.	+	ATCOPIA83	Copia	LTR	94	tiny	7	low	2662047	chromoarm	0	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	6295642	6295733	AT2TE25675	.	+	ATCOPIA22	Copia	LTR	91	tiny	14	low	2662219	chromoarm	0	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	6295971	6296046	AT2TE25680	.	+	ATHATN10	HAT	DNA	75	tiny	48	low	2662548	chromoarm	245	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	6296046	6296271	AT2TE25685	.	+	ATHATN10	HAT	DNA	225	short	48	low	2662623	chromoarm	320	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	6296401	6296471	AT2TE25690	.	+	ATCOPIA83	Copia	LTR	70	tiny	7	low	2662978	chromoarm	675	no-RdDM	no-CHH	.	.	.	.	.
Chr2	6296500	6298693	AT2TE25695	.	+	ATREP10D	Helitron	RC	2193	medium	1295	high	2663077	chromoarm	242	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6298693	6298818	AT2TE25700	.	+	HELITRONY3	Helitron	RC	125	short	1399	high	2665270	chromoarm	117	no-CHH	no-CHH	.	.	.	.	.
Chr2	6304417	6304457	AT2TE25730	.	-	HELITRONY2	Helitron	RC	40	tiny	198	medium	2670994	chromoarm	261	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr2	6304457	6305141	AT2TE25735	.	-	ATREP11	Helitron	RC	684	short	841	high	2671034	chromoarm	301	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	6306614	6307823	AT2TE25740	.	+	ATIS112A	Harbinger	DNA	1209	short	173	medium	2673191	chromoarm	1071	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	6305631,6305716	6307103,6307047	+,+	transcript_id-"ce5cb118-fde8-4545-b90f-05bf07d270f9|69",transcript_id-"925ee73d-c160-42ea-ab07-c11a288039de|4"
Chr2	6307823	6308653	AT2TE25745	.	-	ATREP10A	Helitron	RC	830	short	279	high	2674400	chromoarm	241	no-CHH	no-CHH	.	.	.	.	.
Chr2	6312704	6313405	AT2TE25760	.	+	HELITRON2	Helitron	RC	701	short	194	medium	2679281	chromoarm	401	no-CHH	no-CHH	.	.	.	.	.
Chr2	6318086	6318219	AT2TE25780	.	-	ATN9_1	MuDR	DNA	133	short	65	medium	2684663	chromoarm	2585	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	6326982	6327330	AT2TE25820	.	-	ATREP11	Helitron	RC	348	short	841	high	2693559	chromoarm	3670	no-CHH	no-CHH	.	.	.	.	.
Chr2	6327330	6327405	AT2TE25825	.	-	ATMUN1	MuDR	DNA	75	tiny	107	medium	2693907	chromoarm	4018	no-CHH	no-CHH	.	.	.	.	.
Chr2	6327405	6329611	AT2TE25830	.	+	HELITRONY1D	Helitron	RC	2206	medium	756	high	2693982	chromoarm	4093	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	6329611	6329636	AT2TE25835	.	-	ATREP4	Helitron	RC	25	tiny	832	high	2696188	chromoarm	6299	no-RdDM	no-CHH	.	.	.	.	.
Chr2	6329640	6344951	AT2TE25840	.	-	VANDAL2	MuDR	DNA	15311	long	43	low	2696217	chromoarm	6328	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	6340794	6339582	-	transcript_id-"bd9f8e48-721a-4d96-aa94-d89e53c7613f|14"
Chr2	6344951	6345045	AT2TE25845	.	-	VANDAL2N1	MuDR	DNA	94	tiny	51	medium	2711528	chromoarm	10136	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	6345725	6346011	AT2TE25850	.	-	ATHILA7	Gypsy	LTR	286	short	134	medium	2712302	chromoarm	9170	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	6346579	6347037	AT2TE25855	.	+	BRODYAGA1A	MuDR	DNA	458	short	586	high	2713156	chromoarm	8144	no-CHH	no-CHH	.	.	.	.	.
Chr2	6349168	6349584	AT2TE25865	.	-	ATGP3	Gypsy	LTR	416	short	60	medium	2715745	chromoarm	5597	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	6349682	6350123	AT2TE25870	.	-	BRODYAGA2	MuDR	DNA	441	short	525	high	2716259	chromoarm	5058	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	6351158	6353252	AT2TE25875	.	-	Unassigned	.	Unassigned	2094	medium	.	low	2717735	chromoarm	1929	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	6357827	6357870	AT2TE25890	.	+	RathE3_cons	.	RathE3_cons	43	tiny	104	medium	2724404	chromoarm	0	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	6365972	6366089	AT2TE25930	.	-	ATMU7	MuDR	DNA	117	short	32	low	2732549	chromoarm	154	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	6366183	6366464	AT2TE25935	.	-	ATMU7	MuDR	DNA	281	short	32	low	2732760	chromoarm	365	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	6366464	6366923	AT2TE25940	.	-	ATDNA2T9C	MuDR	DNA	459	short	242	high	2733041	chromoarm	314	no-CHH	no-RdDM	.	.	.	.	.
Chr2	6371215	6371315	AT2TE25960	.	+	HELITRONY1D	Helitron	RC	100	short	756	high	2737792	chromoarm	605	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	6373252	6373488	AT2TE25965	.	-	ATREP10D	Helitron	RC	236	short	1295	high	2739829	chromoarm	2642	no-RdDM	no-CHH	.	.	.	.	.
Chr2	6373488	6377064	AT2TE25970	.	+	HELITRONY3	Helitron	RC	3576	medium	1399	high	2740065	chromoarm	2878	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6377640	6377807	AT2TE25975	.	-	ATREP10D	Helitron	RC	168	short	1295	high	2744216	chromoarm	4622	.	.	LowExpressed	.	.	.	.
Chr2	6377807	6379115	AT2TE25980	.	+	HELITRONY3	Helitron	RC	1308	short	1399	high	2744384	chromoarm	3314	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6379125	6379300	AT2TE25985	.	+	ATREP10D	Helitron	RC	175	short	1295	high	2745702	chromoarm	3129	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6379737	6379768	AT2TE25990	.	-	BRODYAGA1A	MuDR	DNA	31	tiny	586	high	2746314	chromoarm	2661	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6379768	6380253	AT2TE25995	.	-	HELITRONY1E	Helitron	RC	485	short	447	high	2746345	chromoarm	2176	no-RdDM	no-CHH	.	.	.	.	.
Chr2	6380884	6381385	AT2TE26000	.	+	ATREP7	Helitron	RC	501	short	164	medium	2747461	chromoarm	1044	no-CHH	no-CHH	.	.	.	.	.
Chr2	6381385	6382282	AT2TE26005	.	-	META1	Copia	LTR	897	short	138	medium	2747962	chromoarm	147	no-CHH	no-CHH	.	.	.	.	.
Chr2	6382282	6382399	AT2TE26010	.	+	BRODYAGA1A	MuDR	DNA	117	short	586	high	2748859	chromoarm	30	no-CHH	no-CHH	.	.	.	.	.
Chr2	6382399	6382447	AT2TE26015	.	+	ATREP19	.	DNA	48	tiny	189	medium	2748976	chromoarm	0	no-CHH	RDR6-RdDM	.	.	.	.	.
Chr2	6382655	6383125	AT2TE26020	.	+	ATHATN7	HAT	DNA	470	short	71	medium	2749232	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	6383142	6383276	AT2TE26025	.	-	HELITRONY1E	Helitron	RC	134	short	447	high	2749719	chromoarm	413	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	6383276	6383360	AT2TE26030	.	-	ATREP3	Helitron	RC	84	tiny	1439	high	2749853	chromoarm	547	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	6383360	6384544	AT2TE26035	.	-	ATREP3	Helitron	RC	1184	short	1439	high	2749937	chromoarm	631	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6384544	6384569	AT2TE26040	.	-	ATREP3	Helitron	RC	25	tiny	1439	high	2751121	chromoarm	1815	no-CHH	no-CHH	.	.	.	.	.
Chr2	6390516	6390670	AT2TE26070	.	-	VANDAL16	MuDR	DNA	154	short	42	low	2757093	chromoarm	501	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6395401	6395847	AT2TE26090	.	+	ATREP3	Helitron	RC	446	short	1439	high	2761978	chromoarm	560	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	6395847	6395886	AT2TE26095	.	-	HELITRONY1B	Helitron	RC	39	tiny	414	high	2762424	chromoarm	1006	no-CHH	no-CHH	.	.	.	.	.
Chr2	6395886	6397659	AT2TE26100	.	-	ATREP15	Helitron	RC	1773	short	1003	high	2762463	chromoarm	1045	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	6397659	6397756	AT2TE26105	.	+	ATREP3	Helitron	RC	97	tiny	1439	high	2764236	chromoarm	1922	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6399690	6400267	AT2TE26110	.	+	ATENSPM1A	En-Spm	DNA	577	short	77	medium	2766267	chromoarm	0	no-CHH	no-CHH	ExpressedAndAnnotated	6399898,6400019	6399624,6399624	-,-	transcript_id-"bbdbb72b-1e69-400a-a3ab-6c70c9e3bc4a|19",transcript_id-"83d2b77b-ad5a-4bbd-af1e-5535b470fa76|13"
Chr2	6401506	6402283	AT2TE26115	.	+	ATREP3	Helitron	RC	777	short	1439	high	2768083	chromoarm	751	no-CHH	no-CHH	.	.	.	.	.
Chr2	6402435	6402801	AT2TE26120	.	+	ATLINE1_4	L1	LINE	366	short	102	medium	2769012	chromoarm	1408	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6405690	6405977	AT2TE26130	.	+	ATLINE1A	L1	LINE	287	short	289	high	2772267	chromoarm	647	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	6409365	6410233	AT2TE26140	.	-	SIMPLEGUY1	Harbinger	DNA	868	short	116	medium	2775942	chromoarm	350	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6410240	6410282	AT2TE26145	.	-	HELITRONY3	Helitron	RC	42	tiny	1399	high	2776817	chromoarm	1225	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6410282	6410512	AT2TE26150	.	-	BRODYAGA1A	MuDR	DNA	230	short	586	high	2776859	chromoarm	1267	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	6410512	6410568	AT2TE26155	.	+	ATCOPIA28	Copia	LTR	56	tiny	81	medium	2777089	chromoarm	1497	no-CHH	no-CHH	.	.	.	.	.
Chr2	6410568	6410596	AT2TE26160	.	-	HELITRONY3	Helitron	RC	28	tiny	1399	high	2777145	chromoarm	1553	no-CHH	no-CHH	.	.	.	.	.
Chr2	6410736	6411067	AT2TE26165	.	+	ATHATN10	HAT	DNA	331	short	48	low	2777313	chromoarm	1721	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6411067	6412252	AT2TE26170	.	+	ATREP11A	Helitron	RC	1185	short	95	medium	2777644	chromoarm	2052	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6412252	6412565	AT2TE26175	.	+	ATHATN10	HAT	DNA	313	short	48	low	2778829	chromoarm	3237	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6414431	6414738	AT2TE26180	.	-	ATLINE1A	L1	LINE	308	short	289	high	2781007	chromoarm	3460	.	.	.	.	.	.	.
Chr2	6415311	6415460	AT2TE26185	.	+	RathE1_cons	.	RathE1_cons	149	short	213	high	2781888	chromoarm	2738	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6415534	6417341	AT2TE26190	.	-	ATREP15	Helitron	RC	1807	short	1003	high	2782111	chromoarm	857	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6417341	6417380	AT2TE26195	.	-	ATREP15	Helitron	RC	39	tiny	1003	high	2783918	chromoarm	818	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	6417380	6417471	AT2TE26200	.	-	ATREP15	Helitron	RC	91	tiny	1003	high	2783957	chromoarm	727	no-CHH	no-CHH	.	.	.	.	.
Chr2	6417471	6417605	AT2TE26205	.	-	HELITRONY3	Helitron	RC	134	short	1399	high	2784048	chromoarm	593	no-CHH	no-CHH	.	.	.	.	.
Chr2	6417605	6418029	AT2TE26210	.	+	ATHPOGON2	Pogo	DNA	424	short	27	low	2784182	chromoarm	169	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6418029	6418110	AT2TE26215	.	+	ATHPOGON1	Pogo	DNA	81	tiny	174	medium	2784606	chromoarm	88	no-CHH	no-CHH	.	.	.	.	.
Chr2	6420319	6420773	AT2TE26225	.	-	ATGP8	Gypsy	LTR	454	short	92	medium	2786896	chromoarm	1083	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6422229	6427295	AT2TE26230	.	-	ATCOPIA9	Copia	LTR	5066	long	9	low	2788806	chromoarm	2993	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	6426965	6425281	-	transcript_id-"8a72cbd0-3c19-49e1-ae85-2fe646b51045|18"
Chr2	6427295	6427335	AT2TE26235	.	-	ATCOPIA25	Copia	LTR	40	tiny	9	low	2793872	chromoarm	4135	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	6427487	6427957	AT2TE26240	.	-	ATREP1	Helitron	RC	470	short	498	high	2794064	chromoarm	3513	no-CHH	no-CHH	.	.	.	.	.
Chr2	6428935	6429179	AT2TE26245	.	+	VANDAL13	MuDR	DNA	244	short	38	low	2795512	chromoarm	2291	no-CHH	no-CHH	.	.	.	.	.
Chr2	6429179	6429398	AT2TE26250	.	+	HELITRONY3	Helitron	RC	219	short	1399	high	2795756	chromoarm	2072	no-CHH	no-CHH	.	.	.	.	.
Chr2	6429398	6433343	AT2TE26255	.	-	ARNOLDY1	MuDR	DNA	3945	medium	237	high	2795975	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6429861	6430711	AT2TE26260	.	+	ARNOLDY1	MuDR	DNA	850	short	237	high	2796438	chromoarm	759	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6433343	6433474	AT2TE26270	.	+	ARNOLDY1	MuDR	DNA	131	short	237	high	2799920	chromoarm	1517	PolIV-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	6433986	6439754	AT2TE26275	.	+	ATLINE1_6	L1	LINE	5768	long	129	medium	2800563	chromoarm	2160	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	6434056,6434056	6433432,6433632	-,-	transcript_id-"37b90219-f039-45ac-939a-40b4b76133a8|8",transcript_id-"5572ee36-434d-4937-b670-1c65e0836493|129"
Chr2	6440659	6441088	AT2TE26280	.	+	ATREP4	Helitron	RC	429	short	832	high	2807236	chromoarm	8833	PolIV-and-RDR6-RdDM	RDR6-RdDM	ExpressedAndAnnotated	6439982	6440744	+	transcript_id-"94ff1852-41ae-42c3-b7cb-6e39355eddcd|4"
Chr2	6441588	6442987	AT2TE26285	.	-	ATHILA7A	Gypsy	LTR	1399	short	31	low	2808165	chromoarm	8671	no-RdDM	no-RdDM	ExpressedAndAnnotated	6443060	6442381	-	transcript_id-"2d06a23e-c3f9-4be5-bba9-c601d9be09d2|3"
Chr2	6443188	6443260	AT2TE26290	.	+	RathE3_cons	.	RathE3_cons	72	tiny	104	medium	2809765	chromoarm	8398	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6443260	6443947	AT2TE26295	.	+	HELITRONY1D	Helitron	RC	687	short	756	high	2809837	chromoarm	7711	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	6444523	6444558	AT2TE26300	.	-	ATHILA4	Gypsy	LTR	35	tiny	250	high	2811100	chromoarm	7100	no-CHH	no-CHH	.	.	.	.	.
Chr2	6444558	6444580	AT2TE26305	.	-	ATHILA4D_LTR	Gypsy	LTR	22	tiny	106	medium	2811135	chromoarm	7078	no-CHH	no-RdDM	.	.	.	.	.
Chr2	6444580	6446129	AT2TE26310	.	-	ATHILA4D_LTR	Gypsy	LTR	1549	short	106	medium	2811157	chromoarm	5529	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6446777	6450277	AT2TE26315	.	+	ATHAT7	HAT	DNA	3500	medium	20	low	2813354	chromoarm	1381	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	6447029,6447379,6447379,6447379,6447379	6449969,6447825,6447927,6448207,6448691	+,+,+,+,+	transcript_id-"4c58257b-e424-43ff-a15a-c8e223ac8cd3|3",transcript_id-"67fa82fd-5a7f-4421-96d3-8a58cf27b5f3|4",transcript_id-"1e433115-5b1f-4e4d-8308-4f05ba0cfa34|7",transcript_id-"df78d7f5-b4d4-4c53-893c-1beca678a6d7|11",transcript_id-"4b8ff59f-007f-4eaa-b2c0-b4f1ac2e17f2|3"
Chr2	6450277	6450297	AT2TE26320	.	+	ATHATN4	HAT	DNA	20	tiny	56	medium	2816854	chromoarm	1361	RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	6450340	6450564	AT2TE26325	.	-	ATHATN7	HAT	DNA	224	short	71	medium	2816917	chromoarm	1094	no-RdDM	no-CHH	.	.	.	.	.
Chr2	6450564	6450624	AT2TE26330	.	-	ATHATN5	HAT	DNA	60	tiny	42	low	2817141	chromoarm	1034	no-CHH	DCL3-RdDM	.	.	.	.	.
Chr2	6455416	6455889	AT2TE26350	.	-	ATREP19	.	DNA	473	short	189	medium	2821993	chromoarm	1746	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	6457325	6457503	AT2TE26355	.	-	ATENSPM3	En-Spm	DNA	178	short	98	medium	2823902	chromoarm	3655	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	6457601	6458064	AT2TE26360	.	-	ATENSPM7	En-Spm	DNA	463	short	74	medium	2824178	chromoarm	3931	no-RdDM	no-RdDM	ExpressedAndAnnotated	6458216,6458040	6457829,6457835	-,-	transcript_id-"c04a9115-2604-4ec6-9ec7-d62a62279ef8|4",transcript_id-"88026680-598a-45b0-8f24-e082be99019d|5"
Chr2	6458064	6458141	AT2TE26365	.	-	ATENSPM7	En-Spm	DNA	77	tiny	74	medium	2824641	chromoarm	4394	no-RdDM	no-RdDM	ExpressedAndAnnotated	6458216	6457829	-	transcript_id-"c04a9115-2604-4ec6-9ec7-d62a62279ef8|4"
Chr2	6458141	6459905	AT2TE26370	.	-	ATENSPM7	En-Spm	DNA	1764	short	74	medium	2824718	chromoarm	4471	no-RdDM	no-RdDM	ExpressedAndAnnotated	6458216	6457829	-	transcript_id-"c04a9115-2604-4ec6-9ec7-d62a62279ef8|4"
Chr2	6459906	6459937	AT2TE26375	.	-	ATENSPM7	En-Spm	DNA	32	tiny	74	medium	2826482	chromoarm	6235	.	.	LowExpressed	.	.	.	.
Chr2	6459946	6465695	AT2TE26380	.	-	ATENSPM3	En-Spm	DNA	5749	long	98	medium	2826523	chromoarm	6276	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	6461092	6461247	AT2TE26385	.	-	ATENSPM10	En-Spm	DNA	155	short	81	medium	2827669	chromoarm	7422	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	6467272	6467595	AT2TE26410	.	-	ATLINE1_6	L1	LINE	323	short	129	medium	2833849	chromoarm	13602	no-CHH	no-CHH	.	.	.	.	.
Chr2	6468576	6468705	AT2TE26415	.	-	RathE2_cons	.	RathE2_cons	129	short	74	medium	2835153	chromoarm	13133	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6468705	6468805	AT2TE26420	.	+	ATREP3	Helitron	RC	100	short	1439	high	2835282	chromoarm	13033	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6468805	6470844	AT2TE26425	.	+	ATREP4	Helitron	RC	2039	medium	832	high	2835382	chromoarm	10994	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6470844	6470920	AT2TE26430	.	+	ATREP9	Helitron	RC	76	tiny	201	high	2837421	chromoarm	10918	no-CHH	no-CHH	.	.	.	.	.
Chr2	6470920	6471289	AT2TE26435	.	-	ATREP3	Helitron	RC	369	short	1439	high	2837497	chromoarm	10549	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	6471289	6471550	AT2TE26440	.	+	DT1	Mariner	DNA	261	short	123	medium	2837866	chromoarm	10288	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	6471550	6471668	AT2TE26445	.	-	HELITRONY1D	Helitron	RC	118	short	756	high	2838127	chromoarm	10170	PolIV-and-RDR6-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	6471684	6471851	AT2TE26450	.	-	ATIS112A	Harbinger	DNA	167	short	173	medium	2838261	chromoarm	9987	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	6472185	6472407	AT2TE26455	.	+	VANDAL3	MuDR	DNA	222	short	177	medium	2838762	chromoarm	9431	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	6472878,6472623	6472247,6472290	-,-	transcript_id-"ee877241-ed89-48fe-b20b-e7e16523840f|9",transcript_id-"5d7c1fac-e4b9-4416-8e19-b419d8b5116c|5"
Chr2	6474463	6474584	AT2TE26465	.	+	TNAT1A	.	DNA	121	short	162	medium	2841040	chromoarm	7254	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	6476069	6478710	AT2TE26470	.	+	ATLINE1_4	L1	LINE	2641	medium	102	medium	2842646	chromoarm	3128	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	6478710	6478798	AT2TE26475	.	+	ATLINE1_6	L1	LINE	88	tiny	129	medium	2845287	chromoarm	3040	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6479100	6479413	AT2TE26480	.	+	TA11	L1	LINE	313	short	157	medium	2845677	chromoarm	2425	no-RdDM	no-CHH	.	.	.	.	.
Chr2	6480167	6480203	AT2TE26485	.	+	TNAT1A	.	DNA	36	tiny	162	medium	2846744	chromoarm	1635	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	6480203	6480777	AT2TE26490	.	+	TNAT1A	.	DNA	574	short	162	medium	2846780	chromoarm	1061	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6482551	6483170	AT2TE26495	.	+	SIMPLEHAT2	HAT	DNA	619	short	73	medium	2849128	chromoarm	235	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	6483615	6483642	AT2TE26500	.	+	ATCOPIA78	Copia	LTR	27	tiny	24	low	2850192	chromoarm	779	no-RdDM	no-CHH	.	.	.	.	.
Chr2	6483642	6483963	AT2TE26505	.	+	ATCOPIA78	Copia	LTR	321	short	24	low	2850219	chromoarm	458	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6485327	6485577	AT2TE26510	.	+	DT1	Mariner	DNA	250	short	123	medium	2851904	chromoarm	326	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	6489145	6489290	AT2TE26520	.	-	VANDAL9	MuDR	DNA	145	short	43	low	2855722	chromoarm	2415	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6489632	6489883	AT2TE26525	.	-	VANDAL10	MuDR	DNA	251	short	13	low	2856209	chromoarm	1822	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	6490625	6490647	AT2TE26530	.	+	TNAT1A	.	DNA	22	tiny	162	medium	2857202	chromoarm	1058	PolIV-and-RDR6-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	6490648	6491401	AT2TE26535	.	+	TNAT1A	.	DNA	754	short	162	medium	2857224	chromoarm	304	.	.	LowExpressed	.	.	.	.
Chr2	6497153	6497664	AT2TE26560	.	+	ATREP5	Helitron	RC	511	short	624	high	2863730	chromoarm	3482	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6497664	6497691	AT2TE26565	.	+	HELITRONY1A	Helitron	RC	27	tiny	271	high	2864241	chromoarm	3455	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6498206	6498866	AT2TE26570	.	-	ATREP1	Helitron	RC	660	short	498	high	2864783	chromoarm	2280	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6500281	6500692	AT2TE26575	.	+	BRODYAGA1A	MuDR	DNA	411	short	586	high	2866858	chromoarm	454	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	6506581	6506680	AT2TE26600	.	+	TAG3N1	HAT	DNA	99	tiny	97	medium	2873158	chromoarm	2410	no-CHH	no-CHH	.	.	.	.	.
Chr2	6508852	6510920	AT2TE26610	.	+	ATGP2N	Gypsy	LTR	2068	medium	54	medium	2875429	chromoarm	0	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	6512507	6512567	AT2TE26615	.	+	ATREP11	Helitron	RC	60	tiny	841	high	2879084	chromoarm	172	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	6512567	6513788	AT2TE26620	.	-	ATREP10D	Helitron	RC	1221	short	1295	high	2879144	chromoarm	232	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	6513788	6514170	AT2TE26625	.	-	ATLINE1_2	L1	LINE	382	short	41	low	2880365	chromoarm	1453	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6514722	6514756	AT2TE26630	.	-	ATHILA6A	Gypsy	LTR	34	tiny	247	high	2881299	chromoarm	2387	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	6514756	6516381	AT2TE26635	.	-	ATHILA5	Gypsy	LTR	1625	short	131	medium	2881333	chromoarm	2421	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	6516695	6516792	AT2TE26640	.	-	ATTIRX1B	.	DNA	97	tiny	44	low	2883272	chromoarm	2095	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	6517629	6517777	AT2TE26645	.	+	ATHILA4D_LTR	Gypsy	LTR	148	short	106	medium	2884206	chromoarm	1110	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	6518105	6518372	AT2TE26650	.	+	ATCOPIA94	Copia	LTR	267	short	39	low	2884682	chromoarm	515	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	6519270	6519373	AT2TE26655	.	+	ATREP12	Helitron	RC	103	short	22	low	2885847	chromoarm	11	no-CHH	no-CHH	.	.	.	.	.
Chr2	6520284	6520607	AT2TE26660	.	-	ATLINE1_1	L1	LINE	323	short	61	medium	2886861	chromoarm	1025	no-CHH	no-CHH	.	.	.	.	.
Chr2	6520999	6521399	AT2TE26665	.	-	HELITRONY3	Helitron	RC	400	short	1399	high	2887576	chromoarm	1740	no-CHH	no-CHH	.	.	.	.	.
Chr2	6521399	6523618	AT2TE26670	.	-	HELITRONY1D	Helitron	RC	2219	medium	756	high	2887976	chromoarm	2140	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6523618	6523735	AT2TE26675	.	+	HELITRON2	Helitron	RC	117	short	194	medium	2890195	chromoarm	4359	no-CHH	no-CHH	.	.	.	.	.
Chr2	6524255	6533075	AT2TE26680	.	-	ATENSPM10	En-Spm	DNA	8820	long	81	medium	2890832	chromoarm	688	no-RdDM	no-RdDM	ExpressedAndAnnotated	6527821,6533115	6524645,6531276	-,-	transcript_id-"0b4c2099-aa4a-465f-9df2-eea44ce889b2|17",transcript_id-"db042227-f1f6-435d-affd-66b2927d925c|5"
Chr2	6527042	6528197	AT2TE26685	.	-	ATHILA4A	Gypsy	LTR	1155	short	310	high	2893619	chromoarm	5566	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	6527821	6524645	-	transcript_id-"0b4c2099-aa4a-465f-9df2-eea44ce889b2|17"
Chr2	6533082	6533326	AT2TE26700	.	+	HELITRONY2	Helitron	RC	244	short	198	medium	2899659	chromoarm	437	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	6537481	6537962	AT2TE26720	.	+	ATHILA6B	Gypsy	LTR	481	short	134	medium	2904058	chromoarm	766	no-CHH	no-RdDM	.	.	.	.	.
Chr2	6537962	6538030	AT2TE26725	.	+	ATHILA7	Gypsy	LTR	68	tiny	134	medium	2904539	chromoarm	1247	no-CHH	no-CHH	.	.	.	.	.
Chr2	6538469	6538554	AT2TE26730	.	-	TNAT1A	.	DNA	85	tiny	162	medium	2905046	chromoarm	1754	no-CHH	no-RdDM	.	.	.	.	.
Chr2	6538554	6539157	AT2TE26735	.	-	TNAT1A	.	DNA	603	short	162	medium	2905131	chromoarm	1839	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	6539157	6539701	AT2TE26740	.	-	ATREP3	Helitron	RC	544	short	1439	high	2905734	chromoarm	2442	no-CHH	no-CHH	.	.	.	.	.
Chr2	6539390	6539610	AT2TE26745	.	-	ATTIRTA1	Tc1	DNA	220	short	95	medium	2905967	chromoarm	2675	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	6540871	6541308	AT2TE26750	.	-	HELITRONY1D	Helitron	RC	437	short	756	high	2907448	chromoarm	1027	no-CHH	no-CHH	.	.	.	.	.
Chr2	6545606	6545761	AT2TE26770	.	-	ATREP16	MuDR	DNA	155	short	47	low	2912183	chromoarm	1825	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	6549283	6550507	AT2TE26780	.	+	TAT1_ATH	Gypsy	LTR	1224	short	87	medium	2915860	chromoarm	4339	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	6550566	6554398	AT2TE26785	.	+	ATLANTYS1	Gypsy	LTR	3832	medium	153	medium	2917143	chromoarm	448	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	6551110	6551154	AT2TE26790	.	+	ATLANTYS2	Gypsy	LTR	44	tiny	179	medium	2917687	chromoarm	3692	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	6554398	6554796	AT2TE26800	.	+	ATLANTYS1	Gypsy	LTR	398	short	153	medium	2920975	chromoarm	50	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	6560673	6561012	AT2TE26830	.	-	ATHILA7	Gypsy	LTR	339	short	134	medium	2927250	chromoarm	3505	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	6561057	6561294	AT2TE26835	.	+	ATREP16	MuDR	DNA	237	short	47	low	2927634	chromoarm	3859	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6561471	6562148	AT2TE26840	.	+	ATREP6	Helitron	RC	677	short	181	medium	2928048	chromoarm	3005	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6563188	6563522	AT2TE26845	.	-	ATHILA7	Gypsy	LTR	334	short	134	medium	2929765	chromoarm	1631	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	6564668	6564985	AT2TE26850	.	-	ATHILA7	Gypsy	LTR	317	short	134	medium	2931245	chromoarm	168	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	6566207	6578013	AT2TE26855	.	-	ARNOLD2	MuDR	DNA	11806	long	68	medium	2932784	chromoarm	376	PolIV-and-RDR6-RdDM	PolIV-RdDM	ExpressedAndAnnotated	6566364,6572293	6571521,6573580	+,+	transcript_id-"9811234d-425c-4a25-8672-7de6d4ac4f56|5",transcript_id-"3c8105e8-43ba-4828-a2b4-296c1e00d811|6"
Chr2	6578411	6578798	AT2TE26860	.	-	ARNOLDY2	MuDR	DNA	387	short	288	high	2944988	chromoarm	8861	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6578798	6585273	AT2TE26865	.	+	ARNOLDY2	MuDR	DNA	6475	long	288	high	2945375	chromoarm	2386	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	6583135,6583134	6582036,6582167	-,-	transcript_id-"3f8d1161-bebe-42db-951b-e6aa31b675d8|15",transcript_id-"7d722d47-585f-43b2-a4f6-5ac02a4ec2f2|3"
Chr2	6579086	6579573	AT2TE26870	.	-	ARNOLDY1	MuDR	DNA	487	short	237	high	2945663	chromoarm	8086	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	6579573	6581820	AT2TE26875	.	-	ATHAT1	HAT	DNA	2247	medium	105	medium	2946150	chromoarm	5839	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	6583174	6583351	AT2TE26880	.	-	ATHAT1	HAT	DNA	177	short	105	medium	2949751	chromoarm	4308	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	6585273	6585376	AT2TE26885	.	-	ATREP15	Helitron	RC	103	short	1003	high	2951850	chromoarm	2283	no-CHH	no-CHH	.	.	.	.	.
Chr2	6585376	6585638	AT2TE26890	.	+	ATREP4	Helitron	RC	262	short	832	high	2951953	chromoarm	2021	no-CHH	no-CHH	.	.	.	.	.
Chr2	6588957	6589048	AT2TE26900	.	-	ATGP5	Gypsy	LTR	91	tiny	86	medium	2955534	chromoarm	0	no-RdDM	no-CHH	.	.	.	.	.
Chr2	6592369	6607860	AT2TE26910	.	-	ARNOLD2	MuDR	DNA	15491	long	68	medium	2958946	chromoarm	825	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	6592526,6597105,6598483,6598483,6601131	6597715,6597699,6600814,6601195,6602030	+,+,+,+,+	transcript_id-"a71ff941-8308-4e80-b751-9886c7e1652e|4",transcript_id-"6a893be9-40f0-461e-9124-65f955f12500|5",transcript_id-"ff6bc2c3-b659-46b6-a2fc-5ca003710b7d|6",transcript_id-"812e6c35-19d0-46da-8775-bf40a1f68efa|10",transcript_id-"8e63dbb2-4694-480d-b04a-6046714368ea|3"
Chr2	6607860	6607905	AT2TE26915	.	-	ARNOLD3	MuDR	DNA	45	tiny	45	low	2974437	chromoarm	783	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	6607921	6608296	AT2TE26920	.	-	ATMUNX1	MuDR	DNA	375	short	155	medium	2974498	chromoarm	392	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	6610777	6610810	AT2TE26930	.	-	ATDNA2T9C	MuDR	DNA	33	tiny	242	high	2977354	chromoarm	1411	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	6621210	6626425	AT2TE26980	.	-	TA11	L1	LINE	5215	long	157	medium	2987787	chromoarm	2348	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	6626459	6626491	AT2TE26985	.	+	ATREP10D	Helitron	RC	32	tiny	1295	high	2993036	chromoarm	4036	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	6626491	6626567	AT2TE26990	.	-	ATREP4	Helitron	RC	76	tiny	832	high	2993068	chromoarm	3960	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	6626567	6630300	AT2TE26995	.	-	ATREP10D	Helitron	RC	3733	medium	1295	high	2993144	chromoarm	227	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6628571	6628659	AT2TE27000	.	+	ARNOLDY2	MuDR	DNA	88	tiny	288	high	2995148	chromoarm	1868	no-CHH	no-CHH	.	.	.	.	.
Chr2	6629206	6629249	AT2TE27005	.	-	HELITRONY3	Helitron	RC	43	tiny	1399	high	2995783	chromoarm	1278	no-CHH	no-CHH	.	.	.	.	.
Chr2	6629249	6629980	AT2TE27010	.	-	ATREP13	Helitron	RC	731	short	106	medium	2995826	chromoarm	547	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6630300	6630576	AT2TE27015	.	+	ATREP10D	Helitron	RC	276	short	1295	high	2996877	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	6630576	6630661	AT2TE27020	.	-	HELITRONY3	Helitron	RC	85	tiny	1399	high	2997153	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	6632862	6633208	AT2TE27030	.	-	BRODYAGA2	MuDR	DNA	346	short	525	high	2999439	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	6635572	6636422	AT2TE27040	.	+	ATREP3	Helitron	RC	850	short	1439	high	3002149	chromoarm	1544	no-CHH	no-CHH	.	.	.	.	.
Chr2	6638936	6639192	AT2TE27050	.	-	ATENSPM6	En-Spm	DNA	256	short	151	medium	3005513	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	6645349	6645448	AT2TE27080	.	-	ATSINE2A	.	SINE	99	tiny	33	low	3011926	chromoarm	1338	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	6645493	6646976	AT2TE27085	.	+	ATREP3	Helitron	RC	1483	short	1439	high	3012070	chromoarm	1482	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	6646976	6647022	AT2TE27090	.	+	ATREP5	Helitron	RC	46	tiny	624	high	3013553	chromoarm	2607	no-CHH	no-CHH	.	.	.	.	.
Chr2	6648448	6649077	AT2TE27095	.	+	ATGP8	Gypsy	LTR	629	short	92	medium	3015025	chromoarm	552	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	6652273	6652297	AT2TE27105	.	+	HELITRONY1E	Helitron	RC	24	tiny	447	high	3018850	chromoarm	263	no-CHH	no-CHH	.	.	.	.	.
Chr2	6652297	6652579	AT2TE27110	.	+	HELITRONY1E	Helitron	RC	282	short	447	high	3018874	chromoarm	287	no-CHH	no-CHH	.	.	.	.	.
Chr2	6652579	6653466	AT2TE27115	.	-	ATREP4	Helitron	RC	887	short	832	high	3019156	chromoarm	480	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	6653466	6653580	AT2TE27120	.	+	VANDAL8	MuDR	DNA	114	short	123	medium	3020043	chromoarm	366	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	6655316	6655444	AT2TE27125	.	+	ATREP10D	Helitron	RC	128	short	1295	high	3021893	chromoarm	129	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	6655446	6655476	AT2TE27130	.	+	ATREP4	Helitron	RC	30	tiny	832	high	3022023	chromoarm	259	no-CHH	no-CHH	.	.	.	.	.
Chr2	6655476	6656178	AT2TE27135	.	+	HELITRONY3	Helitron	RC	702	short	1399	high	3022053	chromoarm	289	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	6656178	6657048	AT2TE27140	.	-	ATREP15	Helitron	RC	870	short	1003	high	3022755	chromoarm	991	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6657048	6657192	AT2TE27145	.	-	HELITRONY3	Helitron	RC	144	short	1399	high	3023625	chromoarm	1861	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6657192	6658609	AT2TE27150	.	+	HELITRONY1E	Helitron	RC	1417	short	447	high	3023769	chromoarm	2005	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6658609	6658931	AT2TE27155	.	+	HELITRONY3	Helitron	RC	322	short	1399	high	3025186	chromoarm	3422	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	6658931	6659670	AT2TE27160	.	-	ARNOLDY1	MuDR	DNA	739	short	237	high	3025508	chromoarm	3744	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6659670	6663104	AT2TE27165	.	+	ARNOLDY2	MuDR	DNA	3434	medium	288	high	3026247	chromoarm	1655	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6663104	6664354	AT2TE27170	.	+	ATREP3	Helitron	RC	1250	short	1439	high	3029681	chromoarm	405	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6664354	6664409	AT2TE27175	.	+	ATREP3	Helitron	RC	55	tiny	1439	high	3030931	chromoarm	350	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	6664409	6664696	AT2TE27180	.	+	ATREP10D	Helitron	RC	287	short	1295	high	3030986	chromoarm	63	no-CHH	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	6668135	6668266	AT2TE27190	.	+	RathE3_cons	.	RathE3_cons	131	short	104	medium	3034712	chromoarm	460	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6668838	6669000	AT2TE27195	.	-	TA11	L1	LINE	162	short	157	medium	3035415	chromoarm	863	no-CHH	no-CHH	.	.	.	.	.
Chr2	6670387	6671004	AT2TE27200	.	+	ATREP4	Helitron	RC	617	short	832	high	3036964	chromoarm	31	no-CHH	no-CHH	.	.	.	.	.
Chr2	6671074	6671331	AT2TE27205	.	-	ATLINE1_4	L1	LINE	257	short	102	medium	3037651	chromoarm	718	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	6671344	6671509	AT2TE27210	.	-	ATLINE1_5	L1	LINE	165	short	91	medium	3037921	chromoarm	768	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	6671531	6671863	AT2TE27215	.	-	ATLINE1_4	L1	LINE	332	short	102	medium	3038108	chromoarm	414	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	6672891	6673989	AT2TE27220	.	-	Unassigned	.	Unassigned	1098	short	.	low	3039468	chromoarm	160	no-CHH	no-CHH	.	.	.	.	.
Chr2	6673297	6673565	AT2TE27225	.	-	TA11	L1	LINE	268	short	157	medium	3039874	chromoarm	566	no-CHH	no-CHH	.	.	.	.	.
Chr2	6673963	6674117	AT2TE27230	.	+	ATREP8	Helitron	RC	154	short	75	medium	3040540	chromoarm	1232	no-CHH	no-CHH	.	.	.	.	.
Chr2	6674117	6676685	AT2TE27235	.	+	ATREP8	Helitron	RC	2568	medium	75	medium	3040694	chromoarm	653	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	6674761	6674793	AT2TE27240	.	+	ATREP9	Helitron	RC	32	tiny	201	high	3041338	chromoarm	2030	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	6675299	6675319	AT2TE27245	.	-	ATREP7	Helitron	RC	20	tiny	164	medium	3041876	chromoarm	2019	no-CHH	no-CHH	.	.	.	.	.
Chr2	6675319	6675496	AT2TE27250	.	-	ATREP9	Helitron	RC	177	short	201	high	3041896	chromoarm	1842	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	6676157	6676306	AT2TE27255	.	+	ATREP7	Helitron	RC	149	short	164	medium	3042734	chromoarm	1032	no-CHH	no-CHH	.	.	.	.	.
Chr2	6678338	6678390	AT2TE27265	.	-	HELITRONY1D	Helitron	RC	52	tiny	756	high	3044915	chromoarm	640	no-CHH	no-CHH	.	.	.	.	.
Chr2	6678407	6680828	AT2TE27270	.	-	ATREP5	Helitron	RC	2421	medium	624	high	3044984	chromoarm	709	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	6680268	6680001	-	transcript_id-"4fb9ccd2-8ee0-4a50-bac1-d953288dd49e|8"
Chr2	6680828	6683312	AT2TE27275	.	+	ATREP3	Helitron	RC	2484	medium	1439	high	3047405	chromoarm	1189	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6682173	6683112	AT2TE27280	.	+	ATREP7	Helitron	RC	939	short	164	medium	3048750	chromoarm	1389	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6683312	6683432	AT2TE27285	.	-	BRODYAGA2	MuDR	DNA	120	short	525	high	3049889	chromoarm	1069	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6683545	6683708	AT2TE27290	.	-	ATHILA4C	Gypsy	LTR	163	short	206	high	3050122	chromoarm	793	no-RdDM	no-CHH	.	.	.	.	.
Chr2	6683708	6683812	AT2TE27295	.	+	ATCOPIA12	Copia	LTR	104	short	15	low	3050285	chromoarm	689	no-CHH	no-CHH	.	.	.	.	.
Chr2	6683885	6684215	AT2TE27300	.	+	ATCOPIA75	Copia	LTR	330	short	20	low	3050462	chromoarm	286	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	6685383	6685536	AT2TE27305	.	-	ATLINE1A	L1	LINE	153	short	289	high	3051960	chromoarm	516	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	6690837	6690897	AT2TE27330	.	-	ATCOPIA33	Copia	LTR	60	tiny	6	low	3057414	chromoarm	1375	no-CHH	no-CHH	.	.	.	.	.
Chr2	6690899	6692436	AT2TE27335	.	-	ATDNA2T9C	MuDR	DNA	1537	short	242	high	3057476	chromoarm	1437	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6692436	6692580	AT2TE27340	.	-	ATCOPIA69	Copia	LTR	144	short	25	low	3059013	chromoarm	2206	no-CHH	no-CHH	.	.	.	.	.
Chr2	6693694	6694428	AT2TE27345	.	-	HELITRON4	Helitron	RC	734	short	199	medium	3060271	chromoarm	358	no-CHH	no-CHH	.	.	.	.	.
Chr2	6694428	6694456	AT2TE27350	.	+	ATREP11	Helitron	RC	28	tiny	841	high	3061005	chromoarm	330	no-CHH	no-CHH	.	.	.	.	.
Chr2	6694456	6694527	AT2TE27355	.	+	HELITRONY3	Helitron	RC	71	tiny	1399	high	3061033	chromoarm	259	no-CHH	no-CHH	.	.	.	.	.
Chr2	6695355	6695630	AT2TE27360	.	-	ATHATN4	HAT	DNA	275	short	56	medium	3061932	chromoarm	326	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	6695937	6696388	AT2TE27365	.	+	TAG3N1	HAT	DNA	451	short	97	medium	3062514	chromoarm	908	no-RdDM	no-CHH	.	.	.	.	.
Chr2	6696388	6696428	AT2TE27370	.	+	TAG3N1	HAT	DNA	40	tiny	97	medium	3062965	chromoarm	1359	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	6696919	6696945	AT2TE27375	.	+	HELITRONY1B	Helitron	RC	26	tiny	414	high	3063496	chromoarm	1154	no-CHH	no-CHH	.	.	.	.	.
Chr2	6696945	6697670	AT2TE27380	.	+	HELITRONY1D	Helitron	RC	725	short	756	high	3063522	chromoarm	429	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	6700892	6706745	AT2TE27390	.	+	ATLINE1_6	L1	LINE	5853	long	129	medium	3067469	chromoarm	1109	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	6705854	6705919	AT2TE27395	.	+	ATLINE1_6	L1	LINE	65	tiny	129	medium	3072431	chromoarm	3425	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	6707023	6707122	AT2TE27400	.	+	ATREP4	Helitron	RC	99	tiny	832	high	3073600	chromoarm	2222	no-CHH	no-CHH	.	.	.	.	.
Chr2	6707122	6707647	AT2TE27405	.	+	ATHPOGON1	Pogo	DNA	525	short	174	medium	3073699	chromoarm	1697	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	6707647	6708077	AT2TE27410	.	+	ATREP3	Helitron	RC	430	short	1439	high	3074224	chromoarm	1267	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	6708077	6708273	AT2TE27415	.	-	ATCOPIA68	Copia	LTR	196	short	43	low	3074654	chromoarm	1071	no-CHH	no-CHH	.	.	.	.	.
Chr2	6711938	6712118	AT2TE27425	.	+	TAG3N1	HAT	DNA	180	short	97	medium	3078515	chromoarm	894	no-CHH	no-CHH	.	.	.	.	.
Chr2	6714627	6714863	AT2TE27435	.	-	HELITRONY3	Helitron	RC	237	short	1399	high	3081203	chromoarm	240	.	.	.	.	.	.	.
Chr2	6714863	6716186	AT2TE27440	.	-	SIMPLEHAT2	HAT	DNA	1323	short	73	medium	3081440	chromoarm	477	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6716186	6716232	AT2TE27445	.	-	HELITRONY3	Helitron	RC	46	tiny	1399	high	3082763	chromoarm	1800	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	6716232	6716625	AT2TE27450	.	+	HELITRONY3	Helitron	RC	393	short	1399	high	3082809	chromoarm	1846	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6716625	6717298	AT2TE27455	.	-	HELITRONY3	Helitron	RC	673	short	1399	high	3083202	chromoarm	2239	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6718378	6719933	AT2TE27460	.	+	ATLANTYS1	Gypsy	LTR	1555	short	153	medium	3084955	chromoarm	3992	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	6719933	6723443	AT2TE27465	.	+	ATLANTYS1	Gypsy	LTR	3510	medium	153	medium	3086510	chromoarm	504	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	6723443	6723766	AT2TE27470	.	+	ATLANTYS3	Gypsy	LTR	323	short	142	medium	3090020	chromoarm	181	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	6726088	6726515	AT2TE27480	.	+	ATLANTYS3	Gypsy	LTR	427	short	142	medium	3092665	chromoarm	0	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	6728744	6730806	AT2TE27490	.	-	ARNOLDY1	MuDR	DNA	2062	medium	237	high	3095321	chromoarm	561	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	6730807	6730846	AT2TE27495	.	+	ARNOLD3	MuDR	DNA	39	tiny	45	low	3097384	chromoarm	2624	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6730846	6731440	AT2TE27500	.	+	BRODYAGA2	MuDR	DNA	594	short	525	high	3097423	chromoarm	2220	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	6731441	6731698	AT2TE27505	.	-	ATSINE4	.	SINE	258	short	98	medium	3098017	chromoarm	1962	.	.	LowExpressed	.	.	.	.
Chr2	6732964	6733217	AT2TE27510	.	+	HELITRONY3	Helitron	RC	253	short	1399	high	3099541	chromoarm	443	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6736792	6737316	AT2TE27520	.	-	HELITRONY3	Helitron	RC	524	short	1399	high	3103369	chromoarm	1310	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6737879	6738178	AT2TE27525	.	-	ATTIRX1A	.	DNA	299	short	63	medium	3104456	chromoarm	2397	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6738492	6738661	AT2TE27530	.	-	LIMPET1	MuDR	DNA	169	short	116	medium	3105069	chromoarm	3010	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	6739042	6739148	AT2TE27535	.	-	VANDAL22	MuDR	DNA	106	short	48	low	3105619	chromoarm	3560	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	6739148	6740419	AT2TE27540	.	+	ATREP3	Helitron	RC	1271	short	1439	high	3105725	chromoarm	3372	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	6743020	6743042	AT2TE27550	.	+	ATHATN3	HAT	DNA	22	tiny	70	medium	3109597	chromoarm	749	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	6743042	6743512	AT2TE27555	.	-	ATREP10A	Helitron	RC	470	short	279	high	3109619	chromoarm	279	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	6744993	6745868	AT2TE27560	.	-	ATREP10B	Helitron	RC	875	short	491	high	3111570	chromoarm	212	no-CHH	no-CHH	.	.	.	.	.
Chr2	6746356	6746982	AT2TE27565	.	-	ATHATN7	HAT	DNA	626	short	71	medium	3112933	chromoarm	553	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6749822	6750375	AT2TE27575	.	-	ATHATN7	HAT	DNA	553	short	71	medium	3116399	chromoarm	558	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6753217	6753771	AT2TE27585	.	-	ATHATN7	HAT	DNA	554	short	71	medium	3119794	chromoarm	558	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6757218	6757552	AT2TE27595	.	-	ATREP15	Helitron	RC	334	short	1003	high	3123795	chromoarm	1167	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	6757552	6757672	AT2TE27600	.	-	ATREP10B	Helitron	RC	120	short	491	high	3124129	chromoarm	1144	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	6757672	6758348	AT2TE27605	.	+	BRODYAGA2	MuDR	DNA	676	short	525	high	3124249	chromoarm	468	no-CHH	no-CHH	.	.	.	.	.
Chr2	6765642	6766437	AT2TE27640	.	+	ATREP5	Helitron	RC	795	short	624	high	3132219	chromoarm	891	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6766437	6772521	AT2TE27645	.	-	TA11	L1	LINE	6084	long	157	medium	3133014	chromoarm	1628	no-RdDM	no-RdDM	ExpressedAndAnnotated	6766760	6766438	-	transcript_id-"35ecfad1-9b69-43fa-9eaa-fd06c32f2ff7|3"
Chr2	6778861	6785573	AT2TE27670	.	-	ATLINE1_4	L1	LINE	6712	long	102	medium	3145438	chromoarm	240	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	6785414	6785640	+	transcript_id-"8faa90ac-ae75-4526-a02d-992371da583d|4"
Chr2	6786930	6787417	AT2TE27675	.	+	ATDNA2T9C	MuDR	DNA	487	short	242	high	3153507	chromoarm	901	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	6787417	6787624	AT2TE27680	.	+	ATREP11	Helitron	RC	207	short	841	high	3153994	chromoarm	694	no-CHH	no-CHH	.	.	.	.	.
Chr2	6790147	6791016	AT2TE27690	.	+	BOMZH2	MuDR	DNA	869	short	47	low	3156724	chromoarm	359	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6791016	6791127	AT2TE27695	.	+	ATREP15	Helitron	RC	111	short	1003	high	3157593	chromoarm	428	no-CHH	no-CHH	.	.	.	.	.
Chr2	6792190	6792223	AT2TE27700	.	-	VANDAL2	MuDR	DNA	33	tiny	43	low	3158767	chromoarm	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	6792223	6792370	AT2TE27705	.	+	VANDAL2N1	MuDR	DNA	147	short	51	medium	3158800	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	6793301	6793506	AT2TE27710	.	+	ATHAT1	HAT	DNA	205	short	105	medium	3159878	chromoarm	399	no-CHH	no-CHH	.	.	.	.	.
Chr2	6793689	6794209	AT2TE27715	.	+	ATLINE2	L1	LINE	520	short	138	medium	3160266	chromoarm	787	no-CHH	no-CHH	.	.	.	.	.
Chr2	6800592	6800915	AT2TE27740	.	+	ATCOPIA69	Copia	LTR	323	short	25	low	3167169	chromoarm	1034	no-CHH	no-CHH	.	.	.	.	.
Chr2	6803130	6804492	AT2TE27750	.	+	ATREP3	Helitron	RC	1362	short	1439	high	3169707	chromoarm	624	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6804492	6804533	AT2TE27755	.	+	HELITRONY1B	Helitron	RC	41	tiny	414	high	3171069	chromoarm	1499	no-CHH	no-CHH	.	.	.	.	.
Chr2	6804533	6804610	AT2TE27760	.	+	ATREP3	Helitron	RC	77	tiny	1439	high	3171110	chromoarm	1422	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	6805101	6805412	AT2TE27765	.	-	ATLINE1_3A	L1	LINE	311	short	160	medium	3171678	chromoarm	620	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr2	6805412	6805436	AT2TE27770	.	-	ATLINE2	L1	LINE	24	tiny	138	medium	3171989	chromoarm	596	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	6806719	6807332	AT2TE27775	.	-	ATREP5	Helitron	RC	613	short	624	high	3173296	chromoarm	33	no-CHH	no-CHH	.	.	.	.	.
Chr2	6807332	6807614	AT2TE27780	.	+	ATLINEIII	L1	LINE	282	short	196	medium	3173909	chromoarm	646	no-CHH	no-CHH	.	.	.	.	.
Chr2	6808708	6808845	AT2TE27785	.	-	ATREP5	Helitron	RC	137	short	624	high	3175285	chromoarm	1706	no-CHH	no-CHH	.	.	.	.	.
Chr2	6808845	6809950	AT2TE27790	.	-	ATREP10A	Helitron	RC	1105	short	279	high	3175422	chromoarm	601	no-CHH	no-CHH	.	.	.	.	.
Chr2	6809983	6810315	AT2TE27795	.	+	ATLINE1A	L1	LINE	332	short	289	high	3176560	chromoarm	236	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6813810	6814095	AT2TE27805	.	-	BOMZH2	MuDR	DNA	285	short	47	low	3180387	chromoarm	425	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	6819006	6823736	AT2TE27820	.	+	ATCOPIA36	Copia	LTR	4730	medium	14	low	3185583	chromoarm	934	no-CHH	no-CHH	.	.	.	.	.
Chr2	6825695	6826525	AT2TE27825	.	-	ATREP3	Helitron	RC	830	short	1439	high	3192272	chromoarm	157	no-CHH	no-CHH	.	.	.	.	.
Chr2	6837288	6843328	AT2TE27870	.	+	ATCOPIA37	Copia	LTR	6040	long	32	low	3203865	chromoarm	0	no-RdDM	no-RdDM	ExpressedAndAnnotated	6842855,6842875	6837258,6837258	-,-	transcript_id-"839b85c7-ac9d-409d-9a8d-044dcfdd273e|18",transcript_id-"01b6d775-d2c2-4bb9-975b-25c23996eeca|12"
Chr2	6845384	6848332	AT2TE27880	.	-	Unassigned	.	Unassigned	2948	medium	.	low	3211961	chromoarm	281	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	6852304	6852467	AT2TE27900	.	-	ATREP4	Helitron	RC	163	short	832	high	3218881	chromoarm	423	no-RdDM	no-CHH	.	.	.	.	.
Chr2	6852467	6855257	AT2TE27905	.	-	ATREP5	Helitron	RC	2790	medium	624	high	3219044	chromoarm	586	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	6855259	6856677	AT2TE27910	.	-	HELITRONY1B	Helitron	RC	1418	short	414	high	3221836	chromoarm	68	no-CHH	no-CHH	.	.	.	.	.
Chr2	6856677	6856753	AT2TE27915	.	+	HELITRONY1D	Helitron	RC	76	tiny	756	high	3223254	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	6857708	6857781	AT2TE27920	.	-	HELITRONY1B	Helitron	RC	73	tiny	414	high	3224285	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	6857781	6858779	AT2TE27925	.	-	ATREP10D	Helitron	RC	998	short	1295	high	3224358	chromoarm	46	no-CHH	no-CHH	.	.	.	.	.
Chr2	6859017	6859398	AT2TE27930	.	+	BOMZH1	MuDR	DNA	381	short	28	low	3225594	chromoarm	1282	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	6860845	6861313	AT2TE27935	.	+	HELITRONY3	Helitron	RC	468	short	1399	high	3227422	chromoarm	3110	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6861931	6862000	AT2TE27940	.	-	ATHAT3	HAT	DNA	69	tiny	23	low	3228508	chromoarm	3806	no-CHH	no-CHH	.	.	.	.	.
Chr2	6862000	6862656	AT2TE27945	.	+	ATREP4	Helitron	RC	656	short	832	high	3228577	chromoarm	3150	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	6862821	6864153	AT2TE27950	.	+	ATLINE1_6	L1	LINE	1332	short	129	medium	3229398	chromoarm	1653	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	6867079	6867192	AT2TE27960	.	-	HELITRONY3	Helitron	RC	113	short	1399	high	3233656	chromoarm	325	no-CHH	no-CHH	.	.	.	.	.
Chr2	6867192	6868059	AT2TE27965	.	-	ATREP15	Helitron	RC	867	short	1003	high	3233769	chromoarm	438	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	6867548	6867882	AT2TE27970	.	+	ATMUNX1	MuDR	DNA	334	short	155	medium	3234125	chromoarm	794	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6870654	6870788	AT2TE27980	.	-	BRODYAGA1A	MuDR	DNA	134	short	586	high	3237231	chromoarm	468	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	6870788	6871404	AT2TE27985	.	-	HELITRONY2	Helitron	RC	616	short	198	medium	3237365	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6873032	6873325	AT2TE27990	.	-	SIMPLEHAT2	HAT	DNA	293	short	73	medium	3239609	chromoarm	340	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6873325	6873435	AT2TE27995	.	-	HELITRONY3	Helitron	RC	110	short	1399	high	3239902	chromoarm	230	no-CHH	no-CHH	.	.	.	.	.
Chr2	6877360	6877583	AT2TE28005	.	-	DT1	Mariner	DNA	223	short	123	medium	3243937	chromoarm	560	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6880748	6880917	AT2TE28015	.	+	ATDNAI27T9C	MuDR	DNA	169	short	108	medium	3247325	chromoarm	5	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	6881260	6884610	AT2TE28020	.	+	ATMU1	MuDR	DNA	3350	medium	59	medium	3247837	chromoarm	517	no-RdDM	no-RdDM	ExpressedAndAnnotated	6884401	6884085	-	transcript_id-"c779b632-b07f-46a4-ab57-8b71f219fbb1|17"
Chr2	6884610	6885154	AT2TE28025	.	-	ATGP10	Gypsy	LTR	544	short	165	medium	3251187	chromoarm	3579	no-RdDM	no-RdDM	ExpressedAndAnnotated	6886014,6885323,6886014,6885412	6884154,6884821,6884823,6884887	-,-,-,-	transcript_id-"a9ae3233-b651-441a-88ae-ca00cfcf137e|3",transcript_id-"8c9ca13b-e804-4c0e-921d-781dddda00cc|22",transcript_id-"d6e70850-e7f9-48ed-9e46-ade7a77b5b66|3",transcript_id-"b100cdec-9daf-4f7a-ab67-731f54fd631e|6"
Chr2	6885154	6885238	AT2TE28030	.	-	ATGP10	Gypsy	LTR	84	tiny	165	medium	3251731	chromoarm	3495	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	6886556	6887874	AT2TE28035	.	+	ATMU2	MuDR	DNA	1318	short	64	medium	3253133	chromoarm	859	no-RdDM	no-RdDM	ExpressedAndAnnotated	6887230,6887583	6886953,6886955	-,-	transcript_id-"388c7bb2-9b2e-49c2-8aad-de72c7acdef7|4",transcript_id-"55ba059a-1765-465a-9cf5-9ac8c1b15be6|33"
Chr2	6891346	6891915	AT2TE28045	.	-	ATREP10A	Helitron	RC	569	short	279	high	3257923	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	6891915	6891936	AT2TE28050	.	+	ATREP11	Helitron	RC	21	tiny	841	high	3258492	chromoarm	555	no-CHH	no-CHH	.	.	.	.	.
Chr2	6891936	6892030	AT2TE28055	.	-	ATREP10B	Helitron	RC	94	tiny	491	high	3258513	chromoarm	576	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	6892214	6893183	AT2TE28060	.	+	VANDAL18NA	MuDR	DNA	969	short	24	low	3258791	chromoarm	854	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6900769	6900801	AT2TE28100	.	+	ATENSPM2	En-Spm	DNA	33	tiny	114	medium	3267345	chromoarm	4910	.	.	.	.	.	.	.
Chr2	6900801	6900958	AT2TE28105	.	-	ATREP3	Helitron	RC	157	short	1439	high	3267378	chromoarm	4753	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6900958	6902038	AT2TE28110	.	+	ATREP1	Helitron	RC	1080	short	498	high	3267535	chromoarm	3673	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	6902039	6902114	AT2TE28115	.	+	ATREP1	Helitron	RC	76	tiny	498	high	3268615	chromoarm	3597	.	.	.	.	.	.	.
Chr2	6902114	6902589	AT2TE28120	.	+	HELITRONY1B	Helitron	RC	475	short	414	high	3268691	chromoarm	3122	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6903697	6904011	AT2TE28125	.	+	HELITRONY3	Helitron	RC	314	short	1399	high	3270274	chromoarm	1700	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	6904073	6904307	AT2TE28130	.	+	ATHILA8B	Gypsy	LTR	234	short	78	medium	3270650	chromoarm	1404	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	6909754	6914586	AT2TE28160	.	-	ATCOPIA38	Copia	LTR	4832	medium	9	low	3276331	chromoarm	472	no-RdDM	no-RdDM	ExpressedAndAnnotated	6914474	6912377	-	transcript_id-"01e8afa2-ad8c-4bbe-ace9-bcbdcb0db2c0|5"
Chr2	6918536	6918694	AT2TE28180	.	-	VANDAL1	MuDR	DNA	159	short	80	medium	3285112	chromoarm	0	.	.	.	.	.	.	.
Chr2	6922252	6922409	AT2TE28190	.	+	HELITRONY1E	Helitron	RC	157	short	447	high	3288829	chromoarm	274	no-CHH	no-CHH	.	.	.	.	.
Chr2	6922409	6922448	AT2TE28195	.	+	ATREP3	Helitron	RC	39	tiny	1439	high	3288986	chromoarm	431	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	6922449	6922610	AT2TE28200	.	+	ATN9_1	MuDR	DNA	162	short	65	medium	3289025	chromoarm	470	.	.	.	.	.	.	.
Chr2	6922610	6926139	AT2TE28205	.	-	ATREP3	Helitron	RC	3529	medium	1439	high	3289187	chromoarm	632	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6926139	6926251	AT2TE28210	.	+	ATREP10A	Helitron	RC	112	short	279	high	3292716	chromoarm	1138	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr2	6935765	6940571	AT2TE28260	.	+	ATCOPIA38	Copia	LTR	4806	medium	9	low	3302342	chromoarm	432	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	6940611	6940637	AT2TE28265	.	+	ATREP10D	Helitron	RC	26	tiny	1295	high	3307188	chromoarm	952	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	6940637	6941469	AT2TE28270	.	-	HELITRONY3	Helitron	RC	832	short	1399	high	3307214	chromoarm	120	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	6941469	6941502	AT2TE28275	.	+	ATREP10B	Helitron	RC	33	tiny	491	high	3308046	chromoarm	87	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	6943115	6944022	AT2TE28280	.	+	TAG2	HAT	DNA	907	short	86	medium	3309692	chromoarm	1137	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	6944091	6944186	AT2TE28285	.	+	ATHAT1	HAT	DNA	95	tiny	105	medium	3310668	chromoarm	2113	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	6944414	6944900	AT2TE28290	.	+	ATHAT1	HAT	DNA	486	short	105	medium	3310991	chromoarm	2436	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	6945308	6945717	AT2TE28295	.	-	ATLINE1_2	L1	LINE	409	short	41	low	3311885	chromoarm	1635	PolIV-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	6945808	6945307	-	transcript_id-"68f6b1f3-05fc-40a6-b79b-e87f3c913408|3"
Chr2	6948413	6948721	AT2TE28305	.	-	BOMZH2	MuDR	DNA	308	short	47	low	3314990	chromoarm	827	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	6953365	6953712	AT2TE28320	.	+	ATLINE2	L1	LINE	347	short	138	medium	3319942	chromoarm	520	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	6953994	6958817	AT2TE28325	.	+	ATCOPIA38B	Copia	LTR	4823	medium	5	low	3320571	chromoarm	529	no-RdDM	no-RdDM	ExpressedAndAnnotated	6954121,6954123	6956160,6956170	+,+	transcript_id-"de746ea8-ce16-444c-863e-f8a45fc2894e|14",transcript_id-"96ad1cf7-8183-4d58-b444-bfb713dba784|3"
Chr2	6958817	6958934	AT2TE28330	.	+	ATCOPIA15	Copia	LTR	117	short	14	low	3325394	chromoarm	412	no-RdDM	no-CHH	.	.	.	.	.
Chr2	6961744	6962115	AT2TE28340	.	-	ATLINE1_3A	L1	LINE	371	short	160	medium	3328321	chromoarm	1609	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	6962477	6964360	AT2TE28345	.	+	ATDNA12T3A	.	DNA	1883	short	22	low	3329054	chromoarm	2342	no-RdDM	no-CHH	ExpressedAndAnnotated	6963248	6964637	+	transcript_id-"02a5cd57-8133-4619-b2ac-6cf2867b4f5b|6"
Chr2	6965359	6966168	AT2TE28350	.	+	HELITRON3	Helitron	RC	809	short	53	medium	3331936	chromoarm	4183	no-RdDM	no-CHH	.	.	.	.	.
Chr2	6968137	6968167	AT2TE28360	.	+	ARNOLDY1	MuDR	DNA	30	tiny	237	high	3334714	chromoarm	2184	DCL3-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6968167	6968215	AT2TE28365	.	-	ARNOLD4	MuDR	DNA	48	tiny	23	low	3334744	chromoarm	2136	no-RdDM	no-CHH	.	.	.	.	.
Chr2	6968215	6969460	AT2TE28370	.	-	ARNOLDY1	MuDR	DNA	1245	short	237	high	3334792	chromoarm	891	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6969460	6969520	AT2TE28375	.	-	HELITRONY1D	Helitron	RC	60	tiny	756	high	3336037	chromoarm	831	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	6978798	6979043	AT2TE28420	.	+	ATREP4	Helitron	RC	245	short	832	high	3345375	chromoarm	1406	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	6979043	6979261	AT2TE28425	.	-	ATREP5	Helitron	RC	218	short	624	high	3345620	chromoarm	1188	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	6979261	6980308	AT2TE28430	.	+	ATREP4	Helitron	RC	1047	short	832	high	3345838	chromoarm	141	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	6982180	6982382	AT2TE28435	.	-	BRODYAGA1	MuDR	DNA	202	short	251	high	3348757	chromoarm	241	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	6985747	6985840	AT2TE28445	.	-	ATSINE4	.	SINE	93	tiny	98	medium	3352324	chromoarm	391	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	6992405	6992621	AT2TE28470	.	-	HELITRONY3	Helitron	RC	216	short	1399	high	3358982	chromoarm	2583	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6992621	6993741	AT2TE28475	.	+	ATREP15	Helitron	RC	1120	short	1003	high	3359198	chromoarm	2799	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	6994104	6994127	AT2TE28480	.	+	ATREP10D	Helitron	RC	23	tiny	1295	high	3360681	chromoarm	2599	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr2	6994127	6994632	AT2TE28485	.	+	ATREP10D	Helitron	RC	505	short	1295	high	3360704	chromoarm	2094	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	6994633	6995765	AT2TE28490	.	-	BRODYAGA1A	MuDR	DNA	1132	short	586	high	3361210	chromoarm	961	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	6995769	6995832	AT2TE28495	.	-	BRODYAGA1	MuDR	DNA	63	tiny	251	high	3362346	chromoarm	894	no-CHH	no-CHH	.	.	.	.	.
Chr2	6995832	6996003	AT2TE28500	.	+	ATREP10D	Helitron	RC	171	short	1295	high	3362409	chromoarm	723	no-CHH	no-CHH	.	.	.	.	.
Chr2	6996003	6996716	AT2TE28505	.	+	HELITRONY1B	Helitron	RC	713	short	414	high	3362580	chromoarm	10	no-CHH	no-CHH	.	.	.	.	.
Chr2	6996716	6996782	AT2TE28510	.	+	HELITRONY1D	Helitron	RC	66	tiny	756	high	3363293	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	6999078	6999862	AT2TE28520	.	+	ATHPOGON3	Pogo	DNA	784	short	118	medium	3365655	chromoarm	637	no-CHH	no-CHH	.	.	.	.	.
Chr2	6999862	6999883	AT2TE28525	.	+	HELITRONY1D	Helitron	RC	21	tiny	756	high	3366439	chromoarm	1421	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	7000726	7000858	AT2TE28530	.	+	RathE1_cons	.	RathE1_cons	132	short	213	high	3367303	chromoarm	1463	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	7005163	7005375	AT2TE28550	.	-	HELITRONY3A	Helitron	RC	212	short	49	low	3371740	chromoarm	1120	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	7006419	7007823	AT2TE28555	.	+	ATIS112A	Harbinger	DNA	1404	short	173	medium	3372996	chromoarm	2376	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	7006567	7007781	+	transcript_id-"9c1c3059-5544-43b0-8e3d-afb6d532cb37|3"
Chr2	7008314	7008406	AT2TE28560	.	+	VANDAL1	MuDR	DNA	92	tiny	80	medium	3374891	chromoarm	4271	no-RdDM	no-CHH	.	.	.	.	.
Chr2	7008406	7019922	AT2TE28565	.	+	VANDAL1	MuDR	DNA	11516	long	80	medium	3374983	chromoarm	766	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	7014116	7013456	-	transcript_id-"17b6849b-4af5-4a79-951a-430371d32c18|32"
Chr2	7022242	7022285	AT2TE28575	.	-	ATREP5	Helitron	RC	43	tiny	624	high	3388819	chromoarm	642	no-CHH	no-CHH	.	.	.	.	.
Chr2	7022285	7024429	AT2TE28580	.	+	HELITRONY1A	Helitron	RC	2144	medium	271	high	3388862	chromoarm	230	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	7024429	7024578	AT2TE28585	.	-	ATREP1	Helitron	RC	149	short	498	high	3391006	chromoarm	81	no-CHH	no-CHH	.	.	.	.	.
Chr2	7032512	7032744	AT2TE28620	.	-	ATLINE1A	L1	LINE	233	short	289	high	3399088	chromoarm	1133	.	.	.	.	.	.	.
Chr2	7033052	7033315	AT2TE28625	.	-	ATLINE1A	L1	LINE	263	short	289	high	3399629	chromoarm	624	no-CHH	no-CHH	.	.	.	.	.
Chr2	7034192	7034291	AT2TE28630	.	+	BRODYAGA2	MuDR	DNA	99	tiny	525	high	3400769	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	7034291	7035053	AT2TE28635	.	+	HELITRONY3	Helitron	RC	762	short	1399	high	3400868	chromoarm	10	no-CHH	no-CHH	.	.	.	.	.
Chr2	7035082	7035153	AT2TE28640	.	+	ATHATN3	HAT	DNA	71	tiny	70	medium	3401659	chromoarm	309	no-CHH	no-CHH	.	.	.	.	.
Chr2	7035325	7035412	AT2TE28645	.	-	ATREP10	Helitron	RC	87	tiny	63	medium	3401902	chromoarm	50	no-CHH	no-CHH	.	.	.	.	.
Chr2	7038662	7039101	AT2TE28655	.	-	ATREP1	Helitron	RC	439	short	498	high	3405239	chromoarm	336	no-CHH	no-CHH	.	.	.	.	.
Chr2	7043729	7044487	AT2TE28670	.	-	ATREP9	Helitron	RC	758	short	201	high	3410306	chromoarm	796	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	7045302	7045482	AT2TE28675	.	-	VANDAL1	MuDR	DNA	180	short	80	medium	3411879	chromoarm	261	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	7049108	7049756	AT2TE28685	.	+	ATREP3	Helitron	RC	648	short	1439	high	3415685	chromoarm	795	no-CHH	no-CHH	.	.	.	.	.
Chr2	7054488	7054561	AT2TE28700	.	+	TNAT1A	.	DNA	73	tiny	162	medium	3421065	chromoarm	1764	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	7056776	7056994	AT2TE28710	.	+	BRODYAGA2	MuDR	DNA	218	short	525	high	3423353	chromoarm	1935	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	7057489	7058050	AT2TE28715	.	+	HELITRON2	Helitron	RC	561	short	194	medium	3424066	chromoarm	879	no-CHH	no-CHH	.	.	.	.	.
Chr2	7058220	7058441	AT2TE28720	.	-	ATCOPIA61	Copia	LTR	221	short	12	low	3424797	chromoarm	488	no-CHH	no-CHH	.	.	.	.	.
Chr2	7060500	7061610	AT2TE28730	.	-	ATREP5	Helitron	RC	1110	short	624	high	3427077	chromoarm	0	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	7061610	7061671	AT2TE28735	.	-	BRODYAGA1A	MuDR	DNA	61	tiny	586	high	3428187	chromoarm	318	no-CHH	no-CHH	.	.	.	.	.
Chr2	7061671	7061708	AT2TE28740	.	-	BRODYAGA2	MuDR	DNA	37	tiny	525	high	3428248	chromoarm	281	no-CHH	no-RdDM	.	.	.	.	.
Chr2	7063369	7063984	AT2TE28745	.	+	ATREP10D	Helitron	RC	615	short	1295	high	3429946	chromoarm	2	no-CHH	no-CHH	.	.	.	.	.
Chr2	7066728	7069463	AT2TE28755	.	+	VANDAL1	MuDR	DNA	2735	medium	80	medium	3433305	chromoarm	3361	PolIV-and-RDR6-RdDM	PolIV-RdDM	ExpressedAndAnnotated	7066779	7065891	-	transcript_id-"011b01ed-4978-4189-aab7-f941ff72edee|16"
Chr2	7069463	7070960	AT2TE28760	.	+	VANDAL1N1	MuDR	DNA	1497	short	52	medium	3436040	chromoarm	2173	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	7070960	7072149	AT2TE28765	.	+	ATREP10D	Helitron	RC	1189	short	1295	high	3437537	chromoarm	984	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	7072152	7072395	AT2TE28770	.	-	ATHAT1	HAT	DNA	243	short	105	medium	3438729	chromoarm	738	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	7072395	7072811	AT2TE28775	.	-	ATREP11	Helitron	RC	416	short	841	high	3438972	chromoarm	322	PolIV-and-RDR6-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	7077393	7077849	AT2TE28790	.	+	ATREP1	Helitron	RC	456	short	498	high	3443970	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	7081080	7081486	AT2TE28800	.	+	ATHAT7	HAT	DNA	406	short	20	low	3447657	chromoarm	551	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr2	7085242	7085432	AT2TE28810	.	+	ATHATN2	HAT	DNA	190	short	46	low	3451819	chromoarm	539	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	7090329	7090438	AT2TE28830	.	-	ATHILA7	Gypsy	LTR	109	short	134	medium	3456906	chromoarm	1471	no-CHH	no-CHH	.	.	.	.	.
Chr2	7090917	7091066	AT2TE28835	.	+	RathE1_cons	.	RathE1_cons	149	short	213	high	3457494	chromoarm	2059	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	7091066	7091452	AT2TE28840	.	-	ATREP11	Helitron	RC	386	short	841	high	3457643	chromoarm	2208	no-CHH	no-CHH	.	.	.	.	.
Chr2	7093494	7094589	AT2TE28850	.	+	ATREP1	Helitron	RC	1095	short	498	high	3460071	chromoarm	292	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	7094589	7094777	AT2TE28855	.	+	ATREP3	Helitron	RC	188	short	1439	high	3461166	chromoarm	104	no-CHH	no-CHH	.	.	.	.	.
Chr2	7095841	7096194	AT2TE28860	.	+	ATHILA4D_LTR	Gypsy	LTR	353	short	106	medium	3462418	chromoarm	284	PolIV-and-RDR6-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	7108933	7109098	AT2TE28920	.	-	HELITRONY1E	Helitron	RC	165	short	447	high	3475510	chromoarm	146	no-CHH	no-CHH	.	.	.	.	.
Chr2	7109099	7109498	AT2TE28925	.	+	ATREP19	.	DNA	400	short	189	medium	3475675	chromoarm	311	.	.	.	.	.	.	.
Chr2	7109499	7109739	AT2TE28930	.	-	ATREP5	Helitron	RC	241	short	624	high	3476075	chromoarm	711	.	.	.	.	.	.	.
Chr2	7109739	7111059	AT2TE28935	.	-	ARNOLDY2	MuDR	DNA	1320	short	288	high	3476316	chromoarm	952	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	7111071	7111105	AT2TE28940	.	+	ARNOLDY1	MuDR	DNA	34	tiny	237	high	3477648	chromoarm	2284	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	7111105	7111246	AT2TE28945	.	+	ARNOLDY1	MuDR	DNA	141	short	237	high	3477682	chromoarm	2318	no-RdDM	no-CHH	.	.	.	.	.
Chr2	7111246	7113066	AT2TE28950	.	+	ATREP3	Helitron	RC	1820	short	1439	high	3477823	chromoarm	2459	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	7113238	7120081	AT2TE28955	.	+	ATLINE1_5	L1	LINE	6843	long	91	medium	3479815	chromoarm	420	no-RdDM	no-RdDM	ExpressedAndAnnotated	7115813	7116188	+	transcript_id-"df34717a-f806-49f5-8ebc-11ee9708129e|5"
Chr2	7123240	7123360	AT2TE28965	.	-	ATREP10A	Helitron	RC	120	short	279	high	3489817	chromoarm	468	no-CHH	no-CHH	.	.	.	.	.
Chr2	7123360	7123573	AT2TE28970	.	+	ATREP7	Helitron	RC	213	short	164	medium	3489937	chromoarm	588	no-CHH	no-CHH	.	.	.	.	.
Chr2	7123573	7124245	AT2TE28975	.	-	HELITRON4	Helitron	RC	672	short	199	medium	3490150	chromoarm	801	no-CHH	no-CHH	.	.	.	.	.
Chr2	7124245	7124327	AT2TE28980	.	+	HELITRONY1D	Helitron	RC	82	tiny	756	high	3490822	chromoarm	1473	no-CHH	no-CHH	.	.	.	.	.
Chr2	7124327	7124703	AT2TE28985	.	-	ATREP10D	Helitron	RC	376	short	1295	high	3490904	chromoarm	1555	no-CHH	no-CHH	.	.	.	.	.
Chr2	7124703	7124949	AT2TE28990	.	+	ATMUNX1	MuDR	DNA	246	short	155	medium	3491280	chromoarm	1586	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	7124949	7125361	AT2TE28995	.	-	ATREP10A	Helitron	RC	412	short	279	high	3491526	chromoarm	1174	no-CHH	no-CHH	.	.	.	.	.
Chr2	7136081	7136605	AT2TE29040	.	-	ATREP15	Helitron	RC	524	short	1003	high	3502658	chromoarm	598	no-CHH	no-CHH	.	.	.	.	.
Chr2	7136785	7136883	AT2TE29045	.	-	ATHATN4	HAT	DNA	98	tiny	56	medium	3503362	chromoarm	385	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr2	7143421	7144050	AT2TE29070	.	+	VANDAL17	MuDR	DNA	629	short	178	medium	3509998	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	7148308	7150197	AT2TE29090	.	-	ATREP10D	Helitron	RC	1889	short	1295	high	3514885	chromoarm	598	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	7150197	7150250	AT2TE29095	.	+	ATREP5	Helitron	RC	53	tiny	624	high	3516774	chromoarm	545	no-CHH	no-CHH	.	.	.	.	.
Chr2	7153439	7155251	AT2TE29105	.	-	ATREP3	Helitron	RC	1812	short	1439	high	3520016	chromoarm	535	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	7155251	7155275	AT2TE29110	.	+	ATREP3	Helitron	RC	24	tiny	1439	high	3521828	chromoarm	2089	no-CHH	no-CHH	.	.	.	.	.
Chr2	7155275	7155448	AT2TE29115	.	+	ATREP10D	Helitron	RC	173	short	1295	high	3521852	chromoarm	1916	no-CHH	RDR6-RdDM	.	.	.	.	.
Chr2	7155510	7156608	AT2TE29120	.	-	BOMZH1	MuDR	DNA	1098	short	28	low	3522087	chromoarm	756	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	7156938	7157167	AT2TE29125	.	+	RP1_AT	.	DNA	229	short	87	medium	3523515	chromoarm	197	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	7157548	7157740	AT2TE29130	.	-	HELITRONY1E	Helitron	RC	192	short	447	high	3524125	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	7157740	7158878	AT2TE29135	.	+	ATREP10D	Helitron	RC	1138	short	1295	high	3524317	chromoarm	30	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	7158880	7158962	AT2TE29140	.	-	ATREP3	Helitron	RC	82	tiny	1439	high	3525457	chromoarm	1044	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	7161191	7161512	AT2TE29150	.	-	RathE2_cons	.	RathE2_cons	321	short	74	medium	3527768	chromoarm	380	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	7161435	7159695	-	transcript_id-"a9c9a53e-c143-4e3c-91e6-4dfef2ff6a07|5"
Chr2	7166977	7169782	AT2TE29180	.	-	ATREP3	Helitron	RC	2805	medium	1439	high	3533554	chromoarm	537	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	7167347	7167425	AT2TE29185	.	-	ATREP2A	Helitron	RC	78	tiny	116	medium	3533924	chromoarm	907	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	7168001	7168137	AT2TE29190	.	-	ATREP3	Helitron	RC	136	short	1439	high	3534578	chromoarm	1561	no-RdDM	no-CHH	.	.	.	.	.
Chr2	7169782	7170026	AT2TE29195	.	-	ATREP3	Helitron	RC	244	short	1439	high	3536359	chromoarm	3342	no-CHH	no-CHH	.	.	.	.	.
Chr2	7170026	7170153	AT2TE29200	.	+	ATREP10D	Helitron	RC	127	short	1295	high	3536603	chromoarm	3586	no-CHH	no-CHH	.	.	.	.	.
Chr2	7170659	7170853	AT2TE29205	.	+	ATTIRX1A	.	DNA	194	short	63	medium	3537236	chromoarm	4219	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	7170974	7171275	AT2TE29210	.	-	HELITRONY1C	Helitron	RC	301	short	120	medium	3537551	chromoarm	4534	no-CHH	no-CHH	.	.	.	.	.
Chr2	7172655	7173003	AT2TE29215	.	-	ATREP1	Helitron	RC	348	short	498	high	3539232	chromoarm	6215	no-CHH	no-CHH	.	.	.	.	.
Chr2	7173003	7176725	AT2TE29220	.	+	ATLINE1A	L1	LINE	3722	medium	289	high	3539580	chromoarm	3698	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	7176725	7179021	AT2TE29225	.	+	ATREP1	Helitron	RC	2296	medium	498	high	3543302	chromoarm	1402	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	7179021	7179163	AT2TE29230	.	+	ATREP2A	Helitron	RC	142	short	116	medium	3545598	chromoarm	1260	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr2	7182872	7183082	AT2TE29240	.	-	HELITRON3	Helitron	RC	210	short	53	medium	3549449	chromoarm	748	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	7183082	7184315	AT2TE29245	.	+	ATREP10B	Helitron	RC	1233	short	491	high	3549659	chromoarm	336	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	7184315	7184495	AT2TE29250	.	-	ATREP3	Helitron	RC	180	short	1439	high	3550892	chromoarm	156	no-RdDM	no-CHH	.	.	.	.	.
Chr2	7189597	7190057	AT2TE29280	.	+	ATREP19	.	DNA	460	short	189	medium	3556174	chromoarm	1591	no-CHH	no-CHH	.	.	.	.	.
Chr2	7192296	7192493	AT2TE29290	.	-	ATENSPM2	En-Spm	DNA	197	short	114	medium	3558873	chromoarm	486	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	7201900	7203864	AT2TE29340	.	-	ATENSPM2	En-Spm	DNA	1964	short	114	medium	3568477	chromoarm	517	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	7204436	7204473	AT2TE29345	.	+	ATREP4	Helitron	RC	37	tiny	832	high	3571013	chromoarm	917	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	7204473	7205418	AT2TE29350	.	+	ATREP10D	Helitron	RC	945	short	1295	high	3571050	chromoarm	0	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	7206022	7206068	AT2TE29355	.	+	ATHILA7A	Gypsy	LTR	46	tiny	31	low	3572599	chromoarm	104	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	7206068	7206512	AT2TE29360	.	-	ATREP10D	Helitron	RC	444	short	1295	high	3572645	chromoarm	150	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	7206512	7207947	AT2TE29365	.	-	ATREP10C	Helitron	RC	1435	short	123	medium	3573089	chromoarm	594	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	7207947	7208333	AT2TE29370	.	+	ATREP15	Helitron	RC	386	short	1003	high	3574524	chromoarm	952	no-CHH	no-CHH	.	.	.	.	.
Chr2	7224083	7229124	AT2TE29450	.	-	ATCOPIA70	Copia	LTR	5041	long	8	low	3590660	chromoarm	35	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	7232310	7237513	AT2TE29460	.	-	TA11	L1	LINE	5203	long	157	medium	3598887	chromoarm	783	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	7237513	7237749	AT2TE29465	.	-	TA11	L1	LINE	236	short	157	medium	3604090	chromoarm	5986	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	7246548	7247042	AT2TE29500	.	-	ATLANTYS3	Gypsy	LTR	494	short	142	medium	3613125	chromoarm	1081	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	7247528	7247565	AT2TE29505	.	-	ARNOLDY1	MuDR	DNA	37	tiny	237	high	3614105	chromoarm	728	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	7247565	7248142	AT2TE29510	.	+	ARNOLDY1	MuDR	DNA	577	short	237	high	3614142	chromoarm	151	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	7250710	7251184	AT2TE29520	.	+	HELITRON4	Helitron	RC	474	short	199	medium	3617287	chromoarm	697	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	7251184	7251442	AT2TE29525	.	-	ATREP15	Helitron	RC	258	short	1003	high	3617761	chromoarm	1171	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	7251667	7251812	AT2TE29530	.	-	ROMANIAT5	Copia	LTR	145	short	49	low	3618244	chromoarm	1654	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	7261160	7261625	AT2TE29580	.	+	TNAT1A	.	DNA	465	short	162	medium	3627737	chromoarm	360	no-CHH	no-CHH	.	.	.	.	.
Chr2	7261625	7261696	AT2TE29585	.	-	ATTIR16T3A	.	DNA	71	tiny	106	medium	3628202	chromoarm	289	no-CHH	no-CHH	.	.	.	.	.
Chr2	7261696	7261748	AT2TE29590	.	-	HELITRONY3	Helitron	RC	52	tiny	1399	high	3628273	chromoarm	237	no-CHH	no-CHH	.	.	.	.	.
Chr2	7268742	7269764	AT2TE29630	.	-	META1	Copia	LTR	1022	short	138	medium	3635319	chromoarm	5	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	7278652	7279429	AT2TE29680	.	-	HELITRONY3	Helitron	RC	778	short	1399	high	3645228	chromoarm	429	.	.	.	.	.	.	.
Chr2	7285386	7285729	AT2TE29710	.	-	BRODYAGA1A	MuDR	DNA	343	short	586	high	3651963	chromoarm	94	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	7289018	7289097	AT2TE29720	.	-	TAG3N1	HAT	DNA	79	tiny	97	medium	3655595	chromoarm	187	no-CHH	no-CHH	.	.	.	.	.
Chr2	7289217	7291729	AT2TE29725	.	-	VANDAL2N1	MuDR	DNA	2512	medium	51	medium	3655794	chromoarm	386	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	7292883	7295592	AT2TE29730	.	+	VANDAL2N1	MuDR	DNA	2709	medium	51	medium	3659460	chromoarm	298	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	7296522	7296607	AT2TE29735	.	+	ATCOPIA97	Copia	LTR	85	tiny	10	low	3663099	chromoarm	209	no-CHH	no-CHH	.	.	.	.	.
Chr2	7296607	7297567	AT2TE29740	.	+	ATCOPIA35	Copia	LTR	960	short	22	low	3663184	chromoarm	294	no-CHH	no-CHH	.	.	.	.	.
Chr2	7297947	7297977	AT2TE29745	.	+	ATREP15	Helitron	RC	30	tiny	1003	high	3664524	chromoarm	1634	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	7297977	7298004	AT2TE29750	.	+	ATREP4	Helitron	RC	27	tiny	832	high	3664554	chromoarm	1664	no-RdDM	no-CHH	.	.	.	.	.
Chr2	7298004	7298654	AT2TE29755	.	+	ATREP3	Helitron	RC	650	short	1439	high	3664581	chromoarm	1691	no-RdDM	no-CHH	.	.	.	.	.
Chr2	7298654	7298804	AT2TE29760	.	+	ATREP11	Helitron	RC	150	short	841	high	3665231	chromoarm	2341	no-CHH	no-CHH	.	.	.	.	.
Chr2	7299891	7299973	AT2TE29765	.	+	HELITRONY1D	Helitron	RC	82	tiny	756	high	3666468	chromoarm	1673	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	7299973	7300022	AT2TE29770	.	-	BRODYAGA2	MuDR	DNA	49	tiny	525	high	3666550	chromoarm	1624	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	7300022	7308043	AT2TE29775	.	+	ATREP15	Helitron	RC	8021	long	1003	high	3666599	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	7300799	7300863	AT2TE29780	.	+	ATREP15	Helitron	RC	64	tiny	1003	high	3667376	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	7306660	7306788	AT2TE29810	.	-	ARNOLDY2	MuDR	DNA	128	short	288	high	3673237	chromoarm	701	no-CHH	no-CHH	.	.	.	.	.
Chr2	7322418	7323816	AT2TE29890	.	+	ATREP10D	Helitron	RC	1398	short	1295	high	3688995	chromoarm	40	no-CHH	no-CHH	.	.	.	.	.
Chr2	7326421	7326586	AT2TE29900	.	+	ATREP10D	Helitron	RC	165	short	1295	high	3692998	chromoarm	1047	no-CHH	no-CHH	.	.	.	.	.
Chr2	7326586	7327377	AT2TE29905	.	+	ATREP5	Helitron	RC	791	short	624	high	3693163	chromoarm	1212	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	7328512	7328885	AT2TE29910	.	-	ATDNA2T9C	MuDR	DNA	373	short	242	high	3695089	chromoarm	2835	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	7338568	7338685	AT2TE29960	.	+	ATCOPIA24	Copia	LTR	117	short	27	low	3705145	chromoarm	0	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	7340285	7340313	AT2TE29965	.	-	ATCOPIA30	Copia	LTR	28	tiny	33	low	3706862	chromoarm	1178	no-CHH	no-CHH	.	.	.	.	.
Chr2	7340313	7340993	AT2TE29970	.	+	ATREP2	Helitron	RC	680	short	164	medium	3706890	chromoarm	498	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	7347476	7347548	AT2TE30000	.	-	BRODYAGA1A	MuDR	DNA	72	tiny	586	high	3714053	chromoarm	424	no-CHH	no-CHH	.	.	.	.	.
Chr2	7347548	7348692	AT2TE30005	.	+	ATREP7	Helitron	RC	1144	short	164	medium	3714125	chromoarm	496	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	7348692	7348809	AT2TE30010	.	-	BRODYAGA2	MuDR	DNA	117	short	525	high	3715269	chromoarm	1640	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	7349684	7350114	AT2TE30015	.	-	ATREP3	Helitron	RC	430	short	1439	high	3716261	chromoarm	2632	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	7350114	7350211	AT2TE30020	.	-	HELITRONY1E	Helitron	RC	97	tiny	447	high	3716691	chromoarm	3062	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	7350211	7351546	AT2TE30025	.	+	ATREP1	Helitron	RC	1335	short	498	high	3716788	chromoarm	2392	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	7351546	7351596	AT2TE30030	.	+	ATREP11	Helitron	RC	50	tiny	841	high	3718123	chromoarm	2342	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	7351596	7351815	AT2TE30035	.	+	ATREP3	Helitron	RC	219	short	1439	high	3718173	chromoarm	2123	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	7351815	7351974	AT2TE30040	.	-	HELITRONY1E	Helitron	RC	159	short	447	high	3718392	chromoarm	1964	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	7351987	7352209	AT2TE30045	.	-	ATLANTYS2	Gypsy	LTR	222	short	179	medium	3718564	chromoarm	1729	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	7352209	7352535	AT2TE30050	.	-	ATREP19	.	DNA	326	short	189	medium	3718786	chromoarm	1403	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	7352542	7353315	AT2TE30055	.	-	ATHILA0_I	Gypsy	LTR	773	short	138	medium	3719119	chromoarm	623	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	7353315	7353414	AT2TE30060	.	+	ATREP3	Helitron	RC	99	tiny	1439	high	3719892	chromoarm	524	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	7363503	7363999	AT2TE30110	.	+	HELITRONY3	Helitron	RC	496	short	1399	high	3730080	chromoarm	191	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	7369886	7370061	AT2TE30140	.	-	ATREP6	Helitron	RC	175	short	181	medium	3736463	chromoarm	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	7370061	7370328	AT2TE30145	.	-	DT1	Mariner	DNA	267	short	123	medium	3736638	chromoarm	0	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	7370328	7370543	AT2TE30150	.	+	ATREP3	Helitron	RC	215	short	1439	high	3736905	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	7374235	7374660	AT2TE30160	.	+	HELITRON2	Helitron	RC	425	short	194	medium	3740812	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	7374660	7374766	AT2TE30165	.	+	HELITRON2	Helitron	RC	106	short	194	medium	3741237	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	7374766	7374912	AT2TE30170	.	+	HELITRONY2	Helitron	RC	146	short	198	medium	3741343	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	7375548	7375614	AT2TE30175	.	+	ATREP1	Helitron	RC	66	tiny	498	high	3742125	chromoarm	20	no-CHH	no-CHH	.	.	.	.	.
Chr2	7375614	7375852	AT2TE30180	.	+	ATDNATA1	Mariner	DNA	238	short	28	low	3742191	chromoarm	86	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	7387843	7388898	AT2TE30240	.	+	ATREP10D	Helitron	RC	1055	short	1295	high	3754420	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	7388898	7389025	AT2TE30245	.	+	HELITRONY1D	Helitron	RC	127	short	756	high	3755475	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	7409519	7409586	AT2TE30340	.	-	ATREP4	Helitron	RC	67	tiny	832	high	3776096	chromoarm	77	no-CHH	no-CHH	.	.	.	.	.
Chr2	7409586	7409625	AT2TE30345	.	+	HELITRONY1D	Helitron	RC	39	tiny	756	high	3776163	chromoarm	144	no-CHH	no-CHH	.	.	.	.	.
Chr2	7409625	7409769	AT2TE30350	.	-	BRODYAGA2	MuDR	DNA	144	short	525	high	3776202	chromoarm	183	no-CHH	no-CHH	.	.	.	.	.
Chr2	7409769	7410387	AT2TE30355	.	+	BRODYAGA1	MuDR	DNA	618	short	251	high	3776346	chromoarm	327	no-CHH	no-CHH	.	.	.	.	.
Chr2	7410387	7410692	AT2TE30360	.	+	ATREP1	Helitron	RC	305	short	498	high	3776964	chromoarm	142	no-CHH	no-CHH	.	.	.	.	.
Chr2	7415676	7416890	AT2TE30390	.	-	HELITRONY3	Helitron	RC	1214	short	1399	high	3782253	chromoarm	66	no-CHH	no-CHH	.	.	.	.	.
Chr2	7416890	7417038	AT2TE30395	.	+	HELITRONY1A	Helitron	RC	148	short	271	high	3783467	chromoarm	1013	no-CHH	no-CHH	.	.	.	.	.
Chr2	7418697	7418746	AT2TE30400	.	+	ATN9_1	MuDR	DNA	49	tiny	65	medium	3785274	chromoarm	235	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	7418746	7418892	AT2TE30405	.	+	ATN9_1	MuDR	DNA	146	short	65	medium	3785323	chromoarm	284	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	7418893	7419975	AT2TE30410	.	+	ATN9_1	MuDR	DNA	1083	short	65	medium	3785469	chromoarm	430	.	.	.	.	.	.	.
Chr2	7419975	7420424	AT2TE30415	.	+	ATREP3	Helitron	RC	449	short	1439	high	3786552	chromoarm	1513	no-RdDM	no-CHH	.	.	.	.	.
Chr2	7420424	7420540	AT2TE30420	.	+	ATREP3	Helitron	RC	116	short	1439	high	3787001	chromoarm	1870	no-CHH	no-CHH	.	.	.	.	.
Chr2	7420540	7420748	AT2TE30425	.	-	ATREP10D	Helitron	RC	208	short	1295	high	3787117	chromoarm	1662	no-CHH	no-CHH	.	.	.	.	.
Chr2	7420748	7421827	AT2TE30430	.	-	VANDAL18NB	MuDR	DNA	1079	short	19	low	3787325	chromoarm	583	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	7423122	7423249	AT2TE30435	.	+	TNAT1A	.	DNA	127	short	162	medium	3789699	chromoarm	0	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	7427914	7428056	AT2TE30450	.	-	ATLINE1_3A	L1	LINE	142	short	160	medium	3794491	chromoarm	1037	no-CHH	no-CHH	.	.	.	.	.
Chr2	7429168	7429275	AT2TE30455	.	+	SIMPLEGUY1	Harbinger	DNA	108	short	116	medium	3795744	chromoarm	1587	.	.	.	.	.	.	.
Chr2	7437428	7438317	AT2TE30490	.	-	ATREP5	Helitron	RC	889	short	624	high	3804005	chromoarm	130	no-CHH	no-CHH	.	.	.	.	.
Chr2	7438624	7438666	AT2TE30495	.	-	ATREP11A	Helitron	RC	42	tiny	95	medium	3805201	chromoarm	1326	no-CHH	no-CHH	.	.	.	.	.
Chr2	7438666	7438933	AT2TE30500	.	-	HELITRONY1D	Helitron	RC	267	short	756	high	3805243	chromoarm	1368	no-CHH	no-CHH	.	.	.	.	.
Chr2	7438935	7439807	AT2TE30505	.	-	ATREP14	Helitron	RC	872	short	47	low	3805512	chromoarm	1637	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	7441675	7442657	AT2TE30510	.	-	SIMPLEHAT1	HAT	DNA	982	short	56	medium	3808252	chromoarm	708	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	7447006	7447764	AT2TE30530	.	+	ATENSPM1A	En-Spm	DNA	758	short	77	medium	3813583	chromoarm	1037	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	7447764	7447876	AT2TE30535	.	-	ATTIRX1A	.	DNA	112	short	63	medium	3814341	chromoarm	1795	DCL3-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	7447876	7448246	AT2TE30540	.	+	ATHATN1	HAT	DNA	370	short	69	medium	3814453	chromoarm	1907	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	7448246	7448276	AT2TE30545	.	+	ATENSPM1	En-Spm	DNA	30	tiny	30	low	3814823	chromoarm	2277	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	7448276	7448601	AT2TE30550	.	+	ATENSPM1	En-Spm	DNA	325	short	30	low	3814853	chromoarm	2307	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	7448761	7454292	AT2TE30555	.	-	ATCOPIA71	Copia	LTR	5531	long	9	low	3815338	chromoarm	2792	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	7454292	7454336	AT2TE30560	.	-	ATCOPIA71	Copia	LTR	44	tiny	9	low	3820869	chromoarm	4819	no-CHH	no-CHH	.	.	.	.	.
Chr2	7454452	7454818	AT2TE30565	.	+	HELITRONY3	Helitron	RC	366	short	1399	high	3821029	chromoarm	4337	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	7454818	7454891	AT2TE30570	.	-	HELITRONY1D	Helitron	RC	73	tiny	756	high	3821395	chromoarm	4264	no-CHH	no-CHH	.	.	.	.	.
Chr2	7454891	7456634	AT2TE30575	.	+	ATREP3	Helitron	RC	1743	short	1439	high	3821468	chromoarm	2521	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr2	7456634	7456828	AT2TE30580	.	+	ATREP10D	Helitron	RC	194	short	1295	high	3823211	chromoarm	2327	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	7457532	7457933	AT2TE30585	.	-	ATREP1	Helitron	RC	401	short	498	high	3824109	chromoarm	1222	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	7457933	7458896	AT2TE30590	.	+	ATREP11	Helitron	RC	963	short	841	high	3824510	chromoarm	259	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	7458898	7458963	AT2TE30595	.	+	HELITRONY3	Helitron	RC	65	tiny	1399	high	3825475	chromoarm	192	no-CHH	no-CHH	.	.	.	.	.
Chr2	7496405	7496542	AT2TE30780	.	-	RathE1_cons	.	RathE1_cons	138	short	213	high	3862981	chromoarm	421	.	.	.	.	.	.	.
Chr2	7503712	7504389	AT2TE30820	.	-	TNAT2A	.	DNA	677	short	38	low	3870289	chromoarm	390	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	7504389	7504411	AT2TE30825	.	-	TNAT2A	.	DNA	22	tiny	38	low	3870966	chromoarm	368	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	7504411	7504552	AT2TE30830	.	+	ATREP9	Helitron	RC	141	short	201	high	3870988	chromoarm	227	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	7521080	7521176	AT2TE30910	.	+	ARNOLDY1	MuDR	DNA	96	tiny	237	high	3887657	chromoarm	1288	no-CHH	no-CHH	.	.	.	.	.
Chr2	7521176	7521334	AT2TE30915	.	-	ATTIR16T3A	.	DNA	158	short	106	medium	3887753	chromoarm	1130	no-CHH	no-CHH	.	.	.	.	.
Chr2	7521334	7521654	AT2TE30920	.	+	HELITRONY3	Helitron	RC	320	short	1399	high	3887911	chromoarm	810	no-CHH	no-CHH	.	.	.	.	.
Chr2	7521654	7522019	AT2TE30925	.	-	ATTIR16T3A	.	DNA	365	short	106	medium	3888231	chromoarm	445	no-CHH	no-CHH	.	.	.	.	.
Chr2	7522019	7522402	AT2TE30930	.	+	HELITRONY1A	Helitron	RC	383	short	271	high	3888596	chromoarm	62	no-CHH	no-CHH	.	.	.	.	.
Chr2	7526195	7526281	AT2TE30940	.	-	HELITRONY1A	Helitron	RC	86	tiny	271	high	3892772	chromoarm	1394	no-CHH	no-CHH	.	.	.	.	.
Chr2	7526281	7527528	AT2TE30945	.	+	ATREP10D	Helitron	RC	1247	short	1295	high	3892858	chromoarm	147	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	7528839	7529062	AT2TE30950	.	-	ATREP10A	Helitron	RC	223	short	279	high	3895416	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	7529062	7529548	AT2TE30955	.	-	ARNOLDY2	MuDR	DNA	486	short	288	high	3895639	chromoarm	209	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	7529548	7529641	AT2TE30960	.	+	ARNOLDY1	MuDR	DNA	93	tiny	237	high	3896125	chromoarm	695	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	7529641	7531113	AT2TE30965	.	+	ARNOLDY2	MuDR	DNA	1472	short	288	high	3896218	chromoarm	98	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	7535955	7537244	AT2TE30980	.	+	ATREP10D	Helitron	RC	1289	short	1295	high	3902532	chromoarm	79	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	7538532	7538561	AT2TE30985	.	-	RathE3_cons	.	RathE3_cons	29	tiny	104	medium	3905109	chromoarm	2656	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	7538562	7538703	AT2TE30990	.	-	RathE3_cons	.	RathE3_cons	142	short	104	medium	3905138	chromoarm	2685	.	.	.	.	.	.	.
Chr2	7539831	7539985	AT2TE30995	.	-	ATREP10B	Helitron	RC	154	short	491	high	3906408	chromoarm	1629	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr2	7539985	7540658	AT2TE31000	.	-	ATHPOGON2	Pogo	DNA	673	short	27	low	3906562	chromoarm	956	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	7566283	7566548	AT2TE31130	.	-	ATREP3	Helitron	RC	265	short	1439	high	3932860	chromoarm	64	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	7566548	7566645	AT2TE31135	.	-	ATREP11	Helitron	RC	97	tiny	841	high	3933125	chromoarm	329	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	7566645	7567748	AT2TE31140	.	-	ATREP11	Helitron	RC	1103	short	841	high	3933222	chromoarm	269	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	7567748	7567944	AT2TE31145	.	-	ATREP10D	Helitron	RC	196	short	1295	high	3934325	chromoarm	73	no-CHH	no-CHH	.	.	.	.	.
Chr2	7567944	7568028	AT2TE31150	.	+	ATREP10B	Helitron	RC	84	tiny	491	high	3934521	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	7579676	7580293	AT2TE31210	.	+	ATREP10D	Helitron	RC	617	short	1295	high	3946253	chromoarm	2479	no-CHH	no-CHH	.	.	.	.	.
Chr2	7581421	7584152	AT2TE31215	.	+	VANDAL2N1	MuDR	DNA	2731	medium	51	medium	3947998	chromoarm	419	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	7586844	7586916	AT2TE31225	.	-	ATREP15	Helitron	RC	72	tiny	1003	high	3953421	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	7586916	7587284	AT2TE31230	.	+	BRODYAGA1A	MuDR	DNA	368	short	586	high	3953493	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	7587284	7587309	AT2TE31235	.	-	ATREP15	Helitron	RC	25	tiny	1003	high	3953861	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	7594165	7594196	AT2TE31260	.	+	ATREP11	Helitron	RC	31	tiny	841	high	3960742	chromoarm	397	no-CHH	no-CHH	.	.	.	.	.
Chr2	7594196	7594764	AT2TE31265	.	-	ATREP1	Helitron	RC	568	short	498	high	3960773	chromoarm	428	no-CHH	no-CHH	.	.	.	.	.
Chr2	7594764	7595564	AT2TE31270	.	-	HELITRONY3	Helitron	RC	800	short	1399	high	3961341	chromoarm	996	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	7595564	7596100	AT2TE31275	.	-	ARNOLDY2	MuDR	DNA	536	short	288	high	3962141	chromoarm	1796	no-CHH	no-CHH	.	.	.	.	.
Chr2	7596100	7596291	AT2TE31280	.	+	HELITRONY1E	Helitron	RC	191	short	447	high	3962677	chromoarm	2332	no-CHH	no-CHH	.	.	.	.	.
Chr2	7598596	7602614	AT2TE31290	.	-	ATCOPIA39	Copia	LTR	4018	medium	5	low	3965173	chromoarm	4448	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	7605483	7606018	AT2TE31300	.	-	HELITRONY3	Helitron	RC	535	short	1399	high	3972060	chromoarm	1044	no-CHH	no-CHH	.	.	.	.	.
Chr2	7616379	7616686	AT2TE31350	.	+	HELITRONY1D	Helitron	RC	307	short	756	high	3982956	chromoarm	137	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	7622294	7622807	AT2TE31380	.	+	HELITRONY1D	Helitron	RC	513	short	756	high	3988871	chromoarm	1365	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	7622807	7622828	AT2TE31385	.	+	ATREP5	Helitron	RC	21	tiny	624	high	3989384	chromoarm	1349	no-CHH	no-CHH	.	.	.	.	.
Chr2	7632367	7632526	AT2TE31430	.	+	ATCOPIA6	Copia	LTR	159	short	8	low	3998944	chromoarm	878	no-CHH	no-CHH	.	.	.	.	.
Chr2	7638700	7639143	AT2TE31460	.	+	HELITRONY1D	Helitron	RC	443	short	756	high	4005277	chromoarm	1488	no-CHH	no-CHH	.	.	.	.	.
Chr2	7639143	7639276	AT2TE31465	.	+	ATREP3	Helitron	RC	133	short	1439	high	4005720	chromoarm	1396	no-CHH	no-CHH	.	.	.	.	.
Chr2	7650590	7650945	AT2TE31520	.	-	BRODYAGA1A	MuDR	DNA	355	short	586	high	4017167	chromoarm	311	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	7653172	7653829	AT2TE31530	.	-	HELITRONY1D	Helitron	RC	657	short	756	high	4019749	chromoarm	17	no-CHH	no-CHH	.	.	.	.	.
Chr2	7653829	7654013	AT2TE31535	.	-	HELITRONY3	Helitron	RC	184	short	1399	high	4020406	chromoarm	463	no-CHH	no-CHH	.	.	.	.	.
Chr2	7656772	7657022	AT2TE31545	.	-	ATTIRTA1	Tc1	DNA	250	short	95	medium	4023349	chromoarm	553	no-CHH	no-CHH	.	.	.	.	.
Chr2	7658908	7659043	AT2TE31550	.	-	ATLINE1_6	L1	LINE	135	short	129	medium	4025485	chromoarm	2689	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	7659043	7660116	AT2TE31555	.	-	ATLINE1_5	L1	LINE	1073	short	91	medium	4025620	chromoarm	2824	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	7661884	7662041	AT2TE31560	.	-	ATLINE1_3A	L1	LINE	157	short	160	medium	4028461	chromoarm	2122	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	7677285	7677316	AT2TE31640	.	+	HELITRONY1B	Helitron	RC	31	tiny	414	high	4043862	chromoarm	1474	no-CHH	no-CHH	.	.	.	.	.
Chr2	7677316	7678121	AT2TE31645	.	+	ATREP10D	Helitron	RC	805	short	1295	high	4043893	chromoarm	1119	no-CHH	no-CHH	.	.	.	.	.
Chr2	7678121	7678678	AT2TE31650	.	+	ATREP15	Helitron	RC	557	short	1003	high	4044698	chromoarm	562	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	7678678	7678723	AT2TE31655	.	+	BRODYAGA2	MuDR	DNA	45	tiny	525	high	4045255	chromoarm	517	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr2	7690993	7691566	AT2TE31710	.	+	ATREP15	Helitron	RC	573	short	1003	high	4057570	chromoarm	939	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	7691566	7692285	AT2TE31715	.	-	ATHPOGON3	Pogo	DNA	719	short	118	medium	4058143	chromoarm	220	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	7692285	7692353	AT2TE31720	.	+	ATREP3	Helitron	RC	68	tiny	1439	high	4058862	chromoarm	152	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	7695762	7696010	AT2TE31730	.	+	ATCOPIA28	Copia	LTR	248	short	81	medium	4062339	chromoarm	1208	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	7701628	7701715	AT2TE31760	.	-	BRODYAGA1A	MuDR	DNA	87	tiny	586	high	4068205	chromoarm	953	no-CHH	no-CHH	.	.	.	.	.
Chr2	7701715	7701977	AT2TE31765	.	-	DT1	Mariner	DNA	262	short	123	medium	4068292	chromoarm	1040	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	7711220	7712004	AT2TE31810	.	-	HELITRONY1B	Helitron	RC	784	short	414	high	4077797	chromoarm	69	no-CHH	no-CHH	.	.	.	.	.
Chr2	7712515	7712708	AT2TE31815	.	-	ATHILA7	Gypsy	LTR	193	short	134	medium	4079092	chromoarm	779	no-CHH	no-CHH	.	.	.	.	.
Chr2	7716208	7717155	AT2TE31825	.	-	ATREP15	Helitron	RC	947	short	1003	high	4082785	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	7717155	7717194	AT2TE31830	.	+	ATREP3	Helitron	RC	39	tiny	1439	high	4083732	chromoarm	886	no-CHH	no-CHH	.	.	.	.	.
Chr2	7729042	7729533	AT2TE31890	.	-	HELITRONY1D	Helitron	RC	491	short	756	high	4095619	chromoarm	115	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	7730093	7730569	AT2TE31895	.	+	ATREP10A	Helitron	RC	476	short	279	high	4096670	chromoarm	804	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	7730570	7730656	AT2TE31900	.	+	ATREP10D	Helitron	RC	87	tiny	1295	high	4097146	chromoarm	717	.	.	.	.	.	.	.
Chr2	7749067	7749643	AT2TE31990	.	+	ATREP3	Helitron	RC	576	short	1439	high	4115644	chromoarm	1054	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	7751647	7752897	AT2TE32000	.	-	ATREP3	Helitron	RC	1250	short	1439	high	4118224	chromoarm	1363	no-CHH	no-CHH	.	.	.	.	.
Chr2	7752897	7752946	AT2TE32005	.	-	ATREP15	Helitron	RC	49	tiny	1003	high	4119474	chromoarm	1314	no-CHH	no-CHH	.	.	.	.	.
Chr2	7760988	7761503	AT2TE32040	.	-	ATREP3	Helitron	RC	515	short	1439	high	4127565	chromoarm	201	no-CHH	no-CHH	.	.	.	.	.
Chr2	7761503	7761770	AT2TE32045	.	-	ATTIRTA1	Tc1	DNA	267	short	95	medium	4128080	chromoarm	486	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	7761770	7761927	AT2TE32050	.	-	ATREP10D	Helitron	RC	157	short	1295	high	4128347	chromoarm	329	no-CHH	no-CHH	.	.	.	.	.
Chr2	7767523	7767656	AT2TE32080	.	-	ATENSPM1A	En-Spm	DNA	133	short	77	medium	4134100	chromoarm	0	no-CHH	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	7768222	7768871	AT2TE32085	.	+	BRODYAGA1	MuDR	DNA	649	short	251	high	4134799	chromoarm	564	no-CHH	no-CHH	.	.	.	.	.
Chr2	7777248	7782175	AT2TE32120	.	+	TA11	L1	LINE	4927	medium	157	medium	4143825	chromoarm	573	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	7778346	7778428	AT2TE32125	.	+	TA11	L1	LINE	82	tiny	157	medium	4144923	chromoarm	1671	no-RdDM	no-CHH	.	.	.	.	.
Chr2	7805115	7805230	AT2TE32260	.	+	ATREP3	Helitron	RC	115	short	1439	high	4171692	chromoarm	1300	no-CHH	no-CHH	.	.	.	.	.
Chr2	7805230	7806132	AT2TE32265	.	-	HELITRONY1D	Helitron	RC	902	short	756	high	4171807	chromoarm	1415	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	7807258	7807731	AT2TE32270	.	+	ATDNA2T9C	MuDR	DNA	473	short	242	high	4173835	chromoarm	1368	no-RdDM	no-CHH	.	.	.	.	.
Chr2	7813159	7813201	AT2TE32300	.	-	HELITRONY1E	Helitron	RC	42	tiny	447	high	4179736	chromoarm	30	no-CHH	no-CHH	.	.	.	.	.
Chr2	7813201	7813402	AT2TE32305	.	-	ATREP3	Helitron	RC	201	short	1439	high	4179778	chromoarm	72	no-CHH	no-CHH	.	.	.	.	.
Chr2	7813402	7813435	AT2TE32310	.	-	ATREP3	Helitron	RC	33	tiny	1439	high	4179979	chromoarm	273	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	7813435	7816137	AT2TE32315	.	-	ATREP3	Helitron	RC	2702	medium	1439	high	4180012	chromoarm	306	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	7814788	7815541	AT2TE32320	.	+	ATHPOGON3	Pogo	DNA	753	short	118	medium	4181365	chromoarm	1659	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	7841727	7841813	AT2TE32450	.	-	ATHATN3	HAT	DNA	86	tiny	70	medium	4208304	chromoarm	231	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	7844808	7845684	AT2TE32460	.	-	ATREP10D	Helitron	RC	876	short	1295	high	4211385	chromoarm	410	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	7845684	7845751	AT2TE32465	.	-	ATREP10A	Helitron	RC	67	tiny	279	high	4212261	chromoarm	343	no-CHH	no-CHH	.	.	.	.	.
Chr2	7856272	7856520	AT2TE32510	.	-	BRODYAGA1A	MuDR	DNA	248	short	586	high	4222849	chromoarm	677	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	7861063	7861124	AT2TE32530	.	-	HELITRONY1D	Helitron	RC	61	tiny	756	high	4227640	chromoarm	1348	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	7861124	7861659	AT2TE32535	.	+	ATHPOGON1	Pogo	DNA	535	short	174	medium	4227701	chromoarm	1409	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	7861659	7862174	AT2TE32540	.	-	ATREP4	Helitron	RC	515	short	832	high	4228236	chromoarm	1944	no-CHH	no-CHH	.	.	.	.	.
Chr2	7863000	7864055	AT2TE32545	.	-	ATREP5	Helitron	RC	1055	short	624	high	4229577	chromoarm	445	no-CHH	no-CHH	.	.	.	.	.
Chr2	7864055	7864086	AT2TE32550	.	-	ATDNA2T9A	MuDR	DNA	31	tiny	48	low	4230632	chromoarm	414	no-CHH	no-CHH	.	.	.	.	.
Chr2	7874417	7874504	AT2TE32600	.	+	ATMU10	MuDR	DNA	87	tiny	87	medium	4240994	chromoarm	704	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	7874504	7874939	AT2TE32605	.	-	VANDAL17	MuDR	DNA	435	short	178	medium	4241081	chromoarm	791	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	7881567	7881638	AT2TE32630	.	-	ATREP11	Helitron	RC	71	tiny	841	high	4248144	chromoarm	0	no-RdDM	no-CHH	.	.	.	.	.
Chr2	7881638	7883747	AT2TE32635	.	+	HELITRONY1E	Helitron	RC	2109	medium	447	high	4248215	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	7883750	7884704	AT2TE32640	.	+	ATREP1	Helitron	RC	954	short	498	high	4250327	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	7886419	7887562	AT2TE32645	.	+	ATREP6	Helitron	RC	1143	short	181	medium	4252996	chromoarm	21	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	7889634	7889795	AT2TE32655	.	+	RathE1_cons	.	RathE1_cons	161	short	213	high	4256211	chromoarm	756	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	7896825	7896895	AT2TE32690	.	-	VANDAL13	MuDR	DNA	70	tiny	38	low	4263402	chromoarm	1392	no-CHH	no-CHH	.	.	.	.	.
Chr2	7899604	7899775	AT2TE32700	.	-	ATCOPIA30	Copia	LTR	171	short	33	low	4266181	chromoarm	562	no-CHH	no-CHH	.	.	.	.	.
Chr2	7899775	7901147	AT2TE32705	.	+	ATREP15	Helitron	RC	1372	short	1003	high	4266352	chromoarm	733	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	7901147	7901169	AT2TE32710	.	+	ATREP15	Helitron	RC	22	tiny	1003	high	4267724	chromoarm	2105	no-CHH	no-CHH	.	.	.	.	.
Chr2	7901624	7902038	AT2TE32715	.	+	HELITRONY1D	Helitron	RC	414	short	756	high	4268201	chromoarm	2582	no-CHH	no-CHH	.	.	.	.	.
Chr2	7904253	7904452	AT2TE32725	.	+	ATSINE4	.	SINE	199	short	98	medium	4270830	chromoarm	3725	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	7904452	7904628	AT2TE32730	.	+	ATHATN7	HAT	DNA	176	short	71	medium	4271029	chromoarm	3549	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	7904628	7904681	AT2TE32735	.	+	ATHATN7	HAT	DNA	53	tiny	71	medium	4271205	chromoarm	3496	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	7904683	7905115	AT2TE32740	.	+	ATHAT7	HAT	DNA	432	short	20	low	4271260	chromoarm	3062	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	7905115	7905257	AT2TE32745	.	+	ATSINE4	.	SINE	142	short	98	medium	4271692	chromoarm	2920	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	7905813	7905959	AT2TE32750	.	-	VANDAL16	MuDR	DNA	146	short	42	low	4272390	chromoarm	2218	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	7906525	7907294	AT2TE32755	.	+	HELITRONY3	Helitron	RC	769	short	1399	high	4273102	chromoarm	883	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	7906788	7907050	AT2TE32760	.	-	DT1	Mariner	DNA	262	short	123	medium	4273365	chromoarm	1127	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	7907379	7907506	AT2TE32765	.	-	VANDAL16	MuDR	DNA	127	short	42	low	4273956	chromoarm	671	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr2	7916799	7916844	AT2TE32810	.	-	ATREP3	Helitron	RC	46	tiny	1439	high	4283375	chromoarm	776	.	.	LowExpressed	.	.	.	.
Chr2	7916844	7917097	AT2TE32815	.	+	ATDNA2T9C	MuDR	DNA	253	short	242	high	4283421	chromoarm	523	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	7923590	7923895	AT2TE32840	.	-	ATREP10B	Helitron	RC	305	short	491	high	4290167	chromoarm	371	no-CHH	no-CHH	.	.	.	.	.
Chr2	7923895	7924327	AT2TE32845	.	-	HELITRONY1D	Helitron	RC	432	short	756	high	4290472	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	7924327	7924384	AT2TE32850	.	-	BRODYAGA1	MuDR	DNA	57	tiny	251	high	4290904	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	7926488	7927530	AT2TE32860	.	+	ATREP11	Helitron	RC	1042	short	841	high	4293065	chromoarm	722	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	7944813	7946001	AT2TE32950	.	+	ATREP15	Helitron	RC	1188	short	1003	high	4311390	chromoarm	156	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	7950350	7951202	AT2TE32970	.	+	ATREP15	Helitron	RC	852	short	1003	high	4316927	chromoarm	254	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	7951202	7951265	AT2TE32975	.	+	HELITRONY1A	Helitron	RC	63	tiny	271	high	4317779	chromoarm	1106	no-CHH	no-CHH	.	.	.	.	.
Chr2	7956941	7957034	AT2TE33000	.	+	TAG3N1	HAT	DNA	93	tiny	97	medium	4323518	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	7958728	7959315	AT2TE33005	.	-	ATREP5	Helitron	RC	587	short	624	high	4325305	chromoarm	1197	no-CHH	no-CHH	.	.	.	.	.
Chr2	7959522	7959806	AT2TE33010	.	-	HELITRONY1E	Helitron	RC	284	short	447	high	4326099	chromoarm	1991	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	7959806	7961561	AT2TE33015	.	+	ATREP3	Helitron	RC	1755	short	1439	high	4326383	chromoarm	2275	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	7960678	7960699	AT2TE33020	.	-	ATREP3	Helitron	RC	21	tiny	1439	high	4327255	chromoarm	3147	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	7961561	7961687	AT2TE33025	.	-	META1	Copia	LTR	126	short	138	medium	4328138	chromoarm	2790	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	7963666	7963789	AT2TE33035	.	-	RathE1_cons	.	RathE1_cons	124	short	213	high	4330242	chromoarm	688	.	.	.	.	.	.	.
Chr2	7973100	7975332	AT2TE33080	.	+	ATREP15	Helitron	RC	2232	medium	1003	high	4339677	chromoarm	1190	no-CHH	no-CHH	.	.	.	.	.
Chr2	7975332	7975406	AT2TE33085	.	+	ATREP3	Helitron	RC	74	tiny	1439	high	4341909	chromoarm	1441	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr2	7975406	7975458	AT2TE33090	.	+	ATREP4	Helitron	RC	52	tiny	832	high	4341983	chromoarm	1389	no-RdDM	no-CHH	.	.	.	.	.
Chr2	7975458	7975478	AT2TE33095	.	-	ATREP11	Helitron	RC	20	tiny	841	high	4342035	chromoarm	1369	no-CHH	no-CHH	.	.	.	.	.
Chr2	7976288	7976557	AT2TE33100	.	+	RP1_AT	.	DNA	269	short	87	medium	4342865	chromoarm	290	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	7977387	7977848	AT2TE33105	.	+	ATREP10A	Helitron	RC	461	short	279	high	4343964	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	7986348	7986883	AT2TE33140	.	-	ATREP1	Helitron	RC	535	short	498	high	4352925	chromoarm	1451	no-CHH	no-CHH	.	.	.	.	.
Chr2	7987784	7988064	AT2TE33145	.	-	ATHATN1	HAT	DNA	280	short	69	medium	4354361	chromoarm	270	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	7992874	7993338	AT2TE33160	.	+	HELITRONY1D	Helitron	RC	464	short	756	high	4359451	chromoarm	286	no-CHH	no-CHH	.	.	.	.	.
Chr2	8008695	8009232	AT2TE33240	.	-	TNAT1A	.	DNA	537	short	162	medium	4375272	chromoarm	349	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	8009233	8009303	AT2TE33245	.	-	ARNOLDY2	MuDR	DNA	71	tiny	288	high	4375809	chromoarm	278	.	.	.	.	.	.	.
Chr2	8009346	8009614	AT2TE33250	.	-	RP1_AT	.	DNA	268	short	87	medium	4375923	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	8016046	8016295	AT2TE33280	.	-	ATHATN3	HAT	DNA	249	short	70	medium	4382623	chromoarm	4372	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	8016534	8016799	AT2TE33285	.	+	ATDNAI27T9A	MuDR	DNA	265	short	116	medium	4383111	chromoarm	3868	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	8016807	8017528	AT2TE33290	.	-	HELITRONY1C	Helitron	RC	721	short	120	medium	4383384	chromoarm	3139	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	8019133	8019310	AT2TE33295	.	+	ATLINE1_3A	L1	LINE	177	short	160	medium	4385710	chromoarm	1357	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr2	8021498	8021662	AT2TE33305	.	-	LIMPET1	MuDR	DNA	164	short	116	medium	4388075	chromoarm	75	no-CHH	no-CHH	.	.	.	.	.
Chr2	8022577	8022782	AT2TE33310	.	+	BRODYAGA1	MuDR	DNA	205	short	251	high	4389154	chromoarm	1154	no-CHH	no-CHH	.	.	.	.	.
Chr2	8022782	8023337	AT2TE33315	.	+	ATREP1	Helitron	RC	555	short	498	high	4389359	chromoarm	1359	no-CHH	no-CHH	.	.	.	.	.
Chr2	8024403	8025224	AT2TE33320	.	+	ATREP10D	Helitron	RC	821	short	1295	high	4390980	chromoarm	1877	no-CHH	no-CHH	.	.	.	.	.
Chr2	8028045	8029825	AT2TE33330	.	-	ATREP11	Helitron	RC	1780	short	841	high	4394622	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	8029825	8030412	AT2TE33335	.	-	HELITRONY1E	Helitron	RC	587	short	447	high	4396402	chromoarm	1141	no-CHH	no-CHH	.	.	.	.	.
Chr2	8030412	8030752	AT2TE33340	.	-	HELITRON5	Helitron	RC	340	short	56	medium	4396989	chromoarm	801	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	8035385	8036872	AT2TE33360	.	+	ATHAT1	HAT	DNA	1487	short	105	medium	4401962	chromoarm	93	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	8037413	8037601	AT2TE33365	.	+	ATCOPIA30	Copia	LTR	188	short	33	low	4403990	chromoarm	2068	no-CHH	no-RdDM	.	.	.	.	.
Chr2	8038911	8039087	AT2TE33370	.	+	HELITRONY3A	Helitron	RC	176	short	49	low	4405488	chromoarm	582	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	8040886	8041407	AT2TE33375	.	-	BRODYAGA1	MuDR	DNA	521	short	251	high	4407463	chromoarm	106	no-RdDM	no-CHH	.	.	.	.	.
Chr2	8040988	8041247	AT2TE33380	.	+	ATMUN1	MuDR	DNA	259	short	107	medium	4407565	chromoarm	208	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr2	8042417	8042581	AT2TE33385	.	+	ATENSPM1A	En-Spm	DNA	164	short	77	medium	4408994	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	8042581	8043206	AT2TE33390	.	+	ATENSPM1A	En-Spm	DNA	625	short	77	medium	4409158	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	8045520	8045578	AT2TE33400	.	-	ATREP2A	Helitron	RC	58	tiny	116	medium	4412097	chromoarm	512	no-CHH	no-CHH	.	.	.	.	.
Chr2	8045578	8046331	AT2TE33405	.	-	ATREP2A	Helitron	RC	753	short	116	medium	4412155	chromoarm	570	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	8047312	8047812	AT2TE33410	.	+	ATREP15	Helitron	RC	500	short	1003	high	4413889	chromoarm	1850	no-CHH	no-CHH	.	.	.	.	.
Chr2	8047812	8048104	AT2TE33415	.	+	ATREP3	Helitron	RC	292	short	1439	high	4414389	chromoarm	1558	no-CHH	no-CHH	.	.	.	.	.
Chr2	8052254	8052946	AT2TE33430	.	-	ATREP4	Helitron	RC	692	short	832	high	4418831	chromoarm	1041	no-CHH	no-CHH	.	.	.	.	.
Chr2	8052946	8053240	AT2TE33435	.	+	HELITRONY1D	Helitron	RC	294	short	756	high	4419523	chromoarm	1733	no-CHH	no-CHH	.	.	.	.	.
Chr2	8055716	8056413	AT2TE33445	.	+	ATREP15	Helitron	RC	697	short	1003	high	4422293	chromoarm	3282	no-CHH	no-CHH	.	.	.	.	.
Chr2	8056413	8056999	AT2TE33450	.	-	ATREP3	Helitron	RC	586	short	1439	high	4422990	chromoarm	2696	no-CHH	no-CHH	.	.	.	.	.
Chr2	8056999	8057153	AT2TE33455	.	+	ATREP15	Helitron	RC	154	short	1003	high	4423576	chromoarm	2542	no-CHH	no-CHH	.	.	.	.	.
Chr2	8058714	8059096	AT2TE33460	.	+	ATREP3	Helitron	RC	382	short	1439	high	4425291	chromoarm	599	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	8060960	8062109	AT2TE33465	.	-	ATREP8	Helitron	RC	1149	short	75	medium	4427537	chromoarm	122	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	8062109	8062233	AT2TE33470	.	-	ATREP6	Helitron	RC	124	short	181	medium	4428686	chromoarm	1195	no-CHH	no-CHH	.	.	.	.	.
Chr2	8065943	8065994	AT2TE33480	.	-	ATHAT1	HAT	DNA	51	tiny	105	medium	4432520	chromoarm	1102	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	8066003	8067100	AT2TE33485	.	-	TAG2	HAT	DNA	1097	short	86	medium	4432580	chromoarm	1162	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	8066359	8066413	AT2TE33490	.	-	TAG2	HAT	DNA	54	tiny	86	medium	4432936	chromoarm	1518	no-RdDM	no-CHH	.	.	.	.	.
Chr2	8067560	8068726	AT2TE33495	.	-	ATREP10D	Helitron	RC	1166	short	1295	high	4434137	chromoarm	1261	no-CHH	no-CHH	.	.	.	.	.
Chr2	8068726	8069196	AT2TE33500	.	+	HELITRONY1E	Helitron	RC	470	short	447	high	4435303	chromoarm	791	no-CHH	no-CHH	.	.	.	.	.
Chr2	8069196	8069946	AT2TE33505	.	-	ARNOLDY2	MuDR	DNA	750	short	288	high	4435773	chromoarm	41	no-CHH	no-CHH	.	.	.	.	.
Chr2	8069946	8070118	AT2TE33510	.	+	ARNOLD4	MuDR	DNA	172	short	23	low	4436523	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	8070657	8071319	AT2TE33515	.	+	HELITRONY3	Helitron	RC	662	short	1399	high	4437234	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	8074993	8075092	AT2TE33525	.	+	RathE1_cons	.	RathE1_cons	99	tiny	213	high	4441570	chromoarm	428	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	8075381	8075681	AT2TE33530	.	-	ATMU11	MuDR	DNA	301	short	20	low	4441957	chromoarm	666	.	.	.	.	.	.	.
Chr2	8075928	8075978	AT2TE33535	.	-	ATREP13	Helitron	RC	50	tiny	106	medium	4442505	chromoarm	369	no-CHH	no-CHH	.	.	.	.	.
Chr2	8075978	8078202	AT2TE33540	.	-	ATREP13	Helitron	RC	2224	medium	106	medium	4442555	chromoarm	0	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	8076199	8077603	+	transcript_id-"cf80aa45-205b-46f0-b42c-3665eaac10da|7"
Chr2	8079473	8079602	AT2TE33545	.	-	HELITRONY3A	Helitron	RC	129	short	49	low	4446050	chromoarm	113	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	8082979	8083115	AT2TE33555	.	-	ATDNA12T3_2	.	DNA	136	short	660	high	4449556	chromoarm	483	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	8083362	8083438	AT2TE33560	.	+	ATCOPIA57	Copia	LTR	76	tiny	48	low	4449939	chromoarm	315	no-CHH	no-CHH	.	.	.	.	.
Chr2	8086102	8086215	AT2TE33570	.	-	ATMUNX1	MuDR	DNA	114	short	155	medium	4452678	chromoarm	644	.	.	.	.	.	.	.
Chr2	8088588	8088821	AT2TE33580	.	+	ATMUN1	MuDR	DNA	233	short	107	medium	4455165	chromoarm	457	no-CHH	no-CHH	.	.	.	.	.
Chr2	8099606	8099719	AT2TE33630	.	+	BRODYAGA2	MuDR	DNA	114	short	525	high	4466182	chromoarm	987	.	.	.	.	.	.	.
Chr2	8100484	8100652	AT2TE33635	.	-	BRODYAGA2	MuDR	DNA	168	short	525	high	4467061	chromoarm	1866	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	8102690	8102782	AT2TE33645	.	+	ATREP13	Helitron	RC	93	tiny	106	medium	4469266	chromoarm	4071	.	.	.	.	.	.	.
Chr2	8123578	8123630	AT2TE33750	.	+	HARBINGER	Harbinger	DNA	52	tiny	90	medium	4490155	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	8146404	8147053	AT2TE33870	.	+	ATREP10C	Helitron	RC	649	short	123	medium	4512981	chromoarm	139	no-CHH	no-CHH	.	.	.	.	.
Chr2	8149548	8149898	AT2TE33880	.	-	ATREP3	Helitron	RC	350	short	1439	high	4516125	chromoarm	79	no-CHH	no-CHH	.	.	.	.	.
Chr2	8150501	8150703	AT2TE33885	.	+	HELITRONY1D	Helitron	RC	202	short	756	high	4517078	chromoarm	1032	no-CHH	no-CHH	.	.	.	.	.
Chr2	8150902	8156220	AT2TE33890	.	+	ATLINE2	L1	LINE	5318	long	138	medium	4517479	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	8156788	8157622	AT2TE33895	.	+	ATREP15	Helitron	RC	834	short	1003	high	4523365	chromoarm	387	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	8157622	8157719	AT2TE33900	.	+	ATREP10B	Helitron	RC	97	tiny	491	high	4524199	chromoarm	568	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	8160217	8160531	AT2TE33910	.	-	ATREP6	Helitron	RC	314	short	181	medium	4526794	chromoarm	256	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	8165878	8166175	AT2TE33940	.	-	ATREP10D	Helitron	RC	297	short	1295	high	4532455	chromoarm	228	no-CHH	no-CHH	.	.	.	.	.
Chr2	8166175	8167043	AT2TE33945	.	+	ATREP11	Helitron	RC	868	short	841	high	4532752	chromoarm	427	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	8167043	8167409	AT2TE33950	.	-	ATREP15	Helitron	RC	366	short	1003	high	4533620	chromoarm	61	no-CHH	no-CHH	.	.	.	.	.
Chr2	8168679	8168970	AT2TE33955	.	-	ATENSPM1	En-Spm	DNA	291	short	30	low	4535256	chromoarm	11	no-CHH	no-CHH	.	.	.	.	.
Chr2	8172335	8172739	AT2TE33965	.	-	HELITRONY3	Helitron	RC	404	short	1399	high	4538912	chromoarm	48	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	8172739	8173699	AT2TE33970	.	+	ATREP1	Helitron	RC	960	short	498	high	4539316	chromoarm	452	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	8173699	8175030	AT2TE33975	.	-	HELITRONY3	Helitron	RC	1331	short	1399	high	4540276	chromoarm	1355	no-CHH	no-CHH	.	.	.	.	.
Chr2	8175030	8175073	AT2TE33980	.	-	ATREP5	Helitron	RC	43	tiny	624	high	4541607	chromoarm	1312	no-RdDM	no-CHH	.	.	.	.	.
Chr2	8181303	8181395	AT2TE34010	.	-	ATLINE1A	L1	LINE	93	tiny	289	high	4547879	chromoarm	2514	.	.	.	.	.	.	.
Chr2	8182579	8182764	AT2TE34015	.	-	ATREP1	Helitron	RC	185	short	498	high	4549156	chromoarm	1262	no-CHH	no-CHH	.	.	.	.	.
Chr2	8182764	8183299	AT2TE34020	.	+	ATHPOGON1	Pogo	DNA	535	short	174	medium	4549341	chromoarm	727	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	8183299	8183364	AT2TE34025	.	+	ATDNA2T9C	MuDR	DNA	65	tiny	242	high	4549876	chromoarm	662	no-CHH	no-CHH	.	.	.	.	.
Chr2	8200780	8201687	AT2TE34110	.	+	ATREP10D	Helitron	RC	907	short	1295	high	4567357	chromoarm	528	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	8201687	8201756	AT2TE34115	.	-	ATREP3	Helitron	RC	69	tiny	1439	high	4568264	chromoarm	459	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	8201961	8202175	AT2TE34120	.	+	ATMU2	MuDR	DNA	214	short	64	medium	4568538	chromoarm	40	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	8202938	8203148	AT2TE34125	.	-	ATMU2	MuDR	DNA	211	short	64	medium	4569514	chromoarm	356	.	.	.	.	.	.	.
Chr2	8206791	8206953	AT2TE34135	.	+	ATHATN10	HAT	DNA	162	short	48	low	4573368	chromoarm	450	no-CHH	no-CHH	.	.	.	.	.
Chr2	8213023	8213752	AT2TE34160	.	-	HELITRONY1B	Helitron	RC	729	short	414	high	4579600	chromoarm	2976	no-CHH	no-CHH	.	.	.	.	.
Chr2	8213752	8214031	AT2TE34165	.	+	ATREP11	Helitron	RC	279	short	841	high	4580329	chromoarm	3705	no-CHH	no-CHH	.	.	.	.	.
Chr2	8217992	8218161	AT2TE34180	.	-	RathE1_cons	.	RathE1_cons	170	short	213	high	4584568	chromoarm	3696	.	.	.	.	.	.	.
Chr2	8218675	8218915	AT2TE34185	.	+	ATREP15	Helitron	RC	240	short	1003	high	4585252	chromoarm	2942	no-CHH	no-CHH	.	.	.	.	.
Chr2	8218915	8219899	AT2TE34190	.	+	ATREP10D	Helitron	RC	984	short	1295	high	4585492	chromoarm	1958	no-CHH	no-CHH	.	.	.	.	.
Chr2	8220243	8221476	AT2TE34195	.	-	ATREP10D	Helitron	RC	1233	short	1295	high	4586820	chromoarm	381	no-CHH	no-CHH	.	.	.	.	.
Chr2	8221477	8221571	AT2TE34200	.	+	BRODYAGA2	MuDR	DNA	95	tiny	525	high	4588053	chromoarm	286	.	.	.	.	.	.	.
Chr2	8227939	8228130	AT2TE34230	.	-	ATENSPM1A	En-Spm	DNA	191	short	77	medium	4594516	chromoarm	671	no-CHH	no-CHH	.	.	.	.	.
Chr2	8233275	8233426	AT2TE34260	.	-	META1	Copia	LTR	151	short	138	medium	4599852	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	8234669	8235075	AT2TE34265	.	+	ATDNA2T9C	MuDR	DNA	406	short	242	high	4601246	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	8236022	8236256	AT2TE34270	.	+	ATREP15	Helitron	RC	234	short	1003	high	4602599	chromoarm	728	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	8236262	8237646	AT2TE34275	.	+	ATREP6	Helitron	RC	1384	short	181	medium	4602839	chromoarm	968	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	8242285	8242814	AT2TE34290	.	-	ATREP1	Helitron	RC	529	short	498	high	4608862	chromoarm	274	no-CHH	no-CHH	.	.	.	.	.
Chr2	8247076	8249250	AT2TE34310	.	+	ATDNA12T3_2	.	DNA	2174	medium	660	high	4613653	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	8257626	8258356	AT2TE34350	.	+	HELITRONY3	Helitron	RC	730	short	1399	high	4624203	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	8258522	8258974	AT2TE34355	.	-	ATREP10B	Helitron	RC	452	short	491	high	4625099	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	8268471	8269269	AT2TE34400	.	+	ATREP10D	Helitron	RC	798	short	1295	high	4635048	chromoarm	592	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	8268805	8269105	AT2TE34405	.	-	DT1	Mariner	DNA	300	short	123	medium	4635382	chromoarm	926	no-CHH	no-CHH	.	.	.	.	.
Chr2	8269646	8274939	AT2TE34410	.	-	ATLINEIII	L1	LINE	5293	long	196	medium	4636223	chromoarm	1767	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	8276328	8276392	AT2TE34415	.	+	ATREP5	Helitron	RC	64	tiny	624	high	4642905	chromoarm	3085	no-CHH	no-CHH	.	.	.	.	.
Chr2	8276392	8276662	AT2TE34420	.	-	DT1	Mariner	DNA	270	short	123	medium	4642969	chromoarm	2815	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	8279706	8279988	AT2TE34430	.	+	HELITRONY3	Helitron	RC	282	short	1399	high	4646283	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	8280483	8280916	AT2TE34435	.	+	HELITRONY2	Helitron	RC	433	short	198	medium	4647060	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	8292595	8292855	AT2TE34490	.	+	ATTIRTA1	Tc1	DNA	260	short	95	medium	4659172	chromoarm	793	no-CHH	no-CHH	.	.	.	.	.
Chr2	8296254	8297658	AT2TE34500	.	-	ATREP4	Helitron	RC	1404	short	832	high	4662831	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	8297860	8298120	AT2TE34505	.	-	ATCOPIA38	Copia	LTR	260	short	9	low	4664437	chromoarm	1585	no-CHH	no-CHH	.	.	.	.	.
Chr2	8298302	8299130	AT2TE34510	.	+	ATREP15	Helitron	RC	828	short	1003	high	4664879	chromoarm	2027	no-CHH	no-CHH	.	.	.	.	.
Chr2	8299292	8300283	AT2TE34515	.	-	ATREP10D	Helitron	RC	991	short	1295	high	4665869	chromoarm	3017	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	8300283	8300532	AT2TE34520	.	-	ATREP10C	Helitron	RC	249	short	123	medium	4666860	chromoarm	3496	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	8302346	8302941	AT2TE34525	.	-	ATREP13	Helitron	RC	595	short	106	medium	4668923	chromoarm	1087	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	8304692	8304826	AT2TE34530	.	+	ATMUNX1	MuDR	DNA	134	short	155	medium	4671269	chromoarm	273	no-CHH	no-CHH	.	.	.	.	.
Chr2	8305726	8306328	AT2TE34535	.	+	ATDNA2T9C	MuDR	DNA	602	short	242	high	4672303	chromoarm	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	8306328	8306476	AT2TE34540	.	+	VANDALNX2	MuDR	DNA	148	short	37	low	4672905	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	8320569	8321022	AT2TE34610	.	-	ATENSPM5	En-Spm	DNA	453	short	111	medium	4687146	chromoarm	2949	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	8378096	8378642	AT2TE34900	.	+	HELITRONY1B	Helitron	RC	546	short	414	high	4744673	chromoarm	21	no-CHH	no-CHH	.	.	.	.	.
Chr2	8378642	8378665	AT2TE34905	.	+	BRODYAGA1A	MuDR	DNA	23	tiny	586	high	4745219	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	8379697	8381945	AT2TE34910	.	-	HARBINGER	Harbinger	DNA	2248	medium	90	medium	4746274	chromoarm	0	PolIV-RdDM	no-RdDM	ExpressedAndAnnotated	8382211	8379829	-	transcript_id-"cef4e46c-5d6c-4f64-af78-e3fb06f53b41|4"
Chr2	8382001	8382472	AT2TE34915	.	-	HARBINGER	Harbinger	DNA	471	short	90	medium	4748578	chromoarm	0	no-RdDM	no-RdDM	ExpressedAndAnnotated	8382211	8379829	-	transcript_id-"cef4e46c-5d6c-4f64-af78-e3fb06f53b41|4"
Chr2	8402804	8402826	AT2TE35010	.	-	HELITRONY2	Helitron	RC	22	tiny	198	medium	4769381	chromoarm	323	no-CHH	no-CHH	.	.	.	.	.
Chr2	8402826	8403588	AT2TE35015	.	+	BRODYAGA2	MuDR	DNA	762	short	525	high	4769403	chromoarm	345	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	8409529	8409623	AT2TE35040	.	-	ATLINE1A	L1	LINE	94	tiny	289	high	4776106	chromoarm	517	no-CHH	no-CHH	.	.	.	.	.
Chr2	8414321	8414401	AT2TE35060	.	-	ATREP4	Helitron	RC	81	tiny	832	high	4780897	chromoarm	437	.	.	.	.	.	.	.
Chr2	8414401	8415089	AT2TE35065	.	-	ATREP10B	Helitron	RC	688	short	491	high	4780978	chromoarm	127	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	8414488	8414798	AT2TE35070	.	-	ATTIRX1A	.	DNA	310	short	63	medium	4781065	chromoarm	418	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	8420064	8420114	AT2TE35100	.	-	ATREP4	Helitron	RC	50	tiny	832	high	4786641	chromoarm	258	no-CHH	no-CHH	.	.	.	.	.
Chr2	8420114	8420245	AT2TE35105	.	-	ATREP15	Helitron	RC	131	short	1003	high	4786691	chromoarm	308	no-CHH	no-CHH	.	.	.	.	.
Chr2	8420245	8420456	AT2TE35110	.	+	ATREP11	Helitron	RC	211	short	841	high	4786822	chromoarm	439	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr2	8420456	8422950	AT2TE35115	.	+	ATREP5	Helitron	RC	2494	medium	624	high	4787033	chromoarm	650	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	8422950	8422976	AT2TE35120	.	+	HELITRONY1C	Helitron	RC	26	tiny	120	medium	4789527	chromoarm	3144	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	8422976	8423507	AT2TE35125	.	+	ATREP3	Helitron	RC	531	short	1439	high	4789553	chromoarm	2928	no-CHH	no-CHH	.	.	.	.	.
Chr2	8424707	8424817	AT2TE35130	.	-	ATREP4	Helitron	RC	110	short	832	high	4791284	chromoarm	1618	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr2	8424817	8426128	AT2TE35135	.	+	ATREP10D	Helitron	RC	1311	short	1295	high	4791394	chromoarm	307	no-CHH	no-CHH	.	.	.	.	.
Chr2	8426129	8426175	AT2TE35140	.	+	ATREP8	Helitron	RC	47	tiny	75	medium	4792705	chromoarm	260	.	.	.	.	.	.	.
Chr2	8430982	8431496	AT2TE35160	.	+	BRODYAGA1	MuDR	DNA	514	short	251	high	4797559	chromoarm	84	no-CHH	no-CHH	.	.	.	.	.
Chr2	8436555	8436774	AT2TE35190	.	+	BRODYAGA2	MuDR	DNA	219	short	525	high	4803132	chromoarm	260	PolIV-and-RDR6-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	8436774	8437332	AT2TE35195	.	+	ATTIR16T3A	.	DNA	558	short	106	medium	4803351	chromoarm	479	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	8437332	8437354	AT2TE35200	.	-	ATREP15	Helitron	RC	22	tiny	1003	high	4803909	chromoarm	1037	no-CHH	no-CHH	.	.	.	.	.
Chr2	8437824	8438225	AT2TE35205	.	+	ARNOLDY1	MuDR	DNA	401	short	237	high	4804401	chromoarm	375	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	8449450	8450068	AT2TE35260	.	-	ATREP3	Helitron	RC	618	short	1439	high	4816027	chromoarm	2149	no-CHH	no-RdDM	.	.	.	.	.
Chr2	8450068	8450094	AT2TE35265	.	-	ATTIRTA1	Tc1	DNA	26	tiny	95	medium	4816645	chromoarm	2767	no-CHH	RDR6-RdDM	.	.	.	.	.
Chr2	8450094	8450227	AT2TE35270	.	+	ATREP3	Helitron	RC	133	short	1439	high	4816671	chromoarm	2793	no-CHH	no-CHH	.	.	.	.	.
Chr2	8450227	8450772	AT2TE35275	.	-	TAG3N1	HAT	DNA	545	short	97	medium	4816804	chromoarm	2457	no-CHH	no-CHH	.	.	.	.	.
Chr2	8450772	8451041	AT2TE35280	.	+	HELITRONY3	Helitron	RC	269	short	1399	high	4817349	chromoarm	2188	no-CHH	no-CHH	.	.	.	.	.
Chr2	8451041	8451162	AT2TE35285	.	+	ATREP5	Helitron	RC	121	short	624	high	4817618	chromoarm	2067	no-CHH	no-CHH	.	.	.	.	.
Chr2	8451162	8452180	AT2TE35290	.	-	ATMUN1	MuDR	DNA	1018	short	107	medium	4817739	chromoarm	1049	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	8452394	8452422	AT2TE35295	.	-	VANDAL18NA	MuDR	DNA	28	tiny	24	low	4818971	chromoarm	807	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	8452422	8452539	AT2TE35300	.	-	VANDAL18NA	MuDR	DNA	117	short	24	low	4818999	chromoarm	690	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	8453595	8453811	AT2TE35305	.	+	ATREP15	Helitron	RC	216	short	1003	high	4820172	chromoarm	0	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	8453811	8454824	AT2TE35310	.	+	ATREP15	Helitron	RC	1013	short	1003	high	4820388	chromoarm	135	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	8455146	8455188	AT2TE35315	.	+	ATREP10A	Helitron	RC	42	tiny	279	high	4821723	chromoarm	817	no-CHH	no-CHH	.	.	.	.	.
Chr2	8455188	8455884	AT2TE35320	.	+	ATREP10B	Helitron	RC	696	short	491	high	4821765	chromoarm	121	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	8455748	8456017	+	transcript_id-"ff967aa7-bd45-4714-ba38-1ae3bdd821fa|48"
Chr2	8455888	8455931	AT2TE35325	.	+	ATREP10B	Helitron	RC	43	tiny	491	high	4822465	chromoarm	74	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	8488943	8488987	AT2TE35490	.	+	ATREP6	Helitron	RC	44	tiny	181	medium	4855520	chromoarm	292	no-CHH	no-CHH	.	.	.	.	.
Chr2	8488987	8489090	AT2TE35495	.	-	HELITRONY1E	Helitron	RC	103	short	447	high	4855564	chromoarm	336	no-CHH	no-CHH	.	.	.	.	.
Chr2	8489090	8489942	AT2TE35500	.	-	HELITRONY1B	Helitron	RC	852	short	414	high	4855667	chromoarm	274	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	8489942	8490112	AT2TE35505	.	+	ATREP11	Helitron	RC	170	short	841	high	4856519	chromoarm	104	no-CHH	no-CHH	.	.	.	.	.
Chr2	8516299	8516496	AT2TE35630	.	-	ATCOPIA26	Copia	LTR	197	short	19	low	4882876	chromoarm	493	no-RdDM	no-CHH	.	.	.	.	.
Chr2	8518166	8518896	AT2TE35635	.	-	BRODYAGA2	MuDR	DNA	730	short	525	high	4884743	chromoarm	99	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	8528976	8529098	AT2TE35680	.	-	ATREP8	Helitron	RC	123	short	75	medium	4895552	chromoarm	580	.	.	.	.	.	.	.
Chr2	8529598	8529925	AT2TE35685	.	+	ATREP7	Helitron	RC	327	short	164	medium	4896175	chromoarm	1180	no-RdDM	no-CHH	.	.	.	.	.
Chr2	8530160	8530188	AT2TE35690	.	+	ATREP4	Helitron	RC	28	tiny	832	high	4896737	chromoarm	917	no-CHH	no-CHH	.	.	.	.	.
Chr2	8530188	8531377	AT2TE35695	.	+	ATREP10D	Helitron	RC	1189	short	1295	high	4896765	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	8535573	8535684	AT2TE35710	.	+	ATHILA4A	Gypsy	LTR	111	short	310	high	4902150	chromoarm	2219	no-CHH	no-CHH	.	.	.	.	.
Chr2	8535917	8536197	AT2TE35715	.	+	ATHILA4A	Gypsy	LTR	280	short	310	high	4902494	chromoarm	2563	no-CHH	no-CHH	.	.	.	.	.
Chr2	8537701	8538271	AT2TE35720	.	-	ATREP7	Helitron	RC	570	short	164	medium	4904278	chromoarm	658	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	8538271	8538310	AT2TE35725	.	-	ATREP9	Helitron	RC	39	tiny	201	high	4904848	chromoarm	619	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr2	8538617	8538937	AT2TE35730	.	-	BRODYAGA1A	MuDR	DNA	320	short	586	high	4905194	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	8539129	8539189	AT2TE35735	.	+	HELITRONY3	Helitron	RC	60	tiny	1399	high	4905706	chromoarm	0	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	8539189	8540402	AT2TE35740	.	-	HELITRONY1B	Helitron	RC	1213	short	414	high	4905766	chromoarm	2	no-CHH	no-CHH	.	.	.	.	.
Chr2	8540402	8540464	AT2TE35745	.	+	ATREP4	Helitron	RC	62	tiny	832	high	4906979	chromoarm	1215	no-CHH	no-CHH	.	.	.	.	.
Chr2	8540467	8540857	AT2TE35750	.	+	ATLINE1_1	L1	LINE	390	short	61	medium	4907044	chromoarm	1280	no-CHH	no-CHH	.	.	.	.	.
Chr2	8542080	8542230	AT2TE35755	.	-	ATCOPIA28	Copia	LTR	150	short	81	medium	4908657	chromoarm	2893	no-CHH	no-CHH	.	.	.	.	.
Chr2	8542741	8542975	AT2TE35760	.	-	ATREP3	Helitron	RC	234	short	1439	high	4909318	chromoarm	3554	no-CHH	no-CHH	.	.	.	.	.
Chr2	8542975	8543786	AT2TE35765	.	-	ATREP10B	Helitron	RC	811	short	491	high	4909552	chromoarm	3788	no-CHH	no-CHH	.	.	.	.	.
Chr2	8545633	8547002	AT2TE35770	.	+	Unassigned	.	Unassigned	1369	short	.	low	4912210	chromoarm	3416	no-CHH	no-CHH	.	.	.	.	.
Chr2	8547952	8548391	AT2TE35775	.	-	HELITRONY1D	Helitron	RC	439	short	756	high	4914529	chromoarm	2027	no-CHH	no-CHH	.	.	.	.	.
Chr2	8548391	8548581	AT2TE35780	.	-	ATREP3	Helitron	RC	190	short	1439	high	4914968	chromoarm	1837	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	8552293	8553526	AT2TE35790	.	+	HELITRONY1A	Helitron	RC	1233	short	271	high	4918870	chromoarm	17	no-CHH	no-CHH	.	.	.	.	.
Chr2	8553526	8553847	AT2TE35795	.	+	HELITRONY1E	Helitron	RC	321	short	447	high	4920103	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	8553865	8554835	AT2TE35800	.	-	HELITRONY3	Helitron	RC	970	short	1399	high	4920442	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	8554835	8556037	AT2TE35805	.	-	HELITRONY3	Helitron	RC	1202	short	1399	high	4921412	chromoarm	806	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	8556037	8556509	AT2TE35810	.	+	ATREP11	Helitron	RC	472	short	841	high	4922614	chromoarm	1591	no-CHH	no-CHH	.	.	.	.	.
Chr2	8559759	8560191	AT2TE35820	.	+	ATREP1	Helitron	RC	432	short	498	high	4926336	chromoarm	370	no-CHH	no-CHH	.	.	.	.	.
Chr2	8560191	8560256	AT2TE35825	.	-	BRODYAGA2	MuDR	DNA	65	tiny	525	high	4926768	chromoarm	802	no-CHH	no-CHH	.	.	.	.	.
Chr2	8560531	8560625	AT2TE35830	.	+	ATDNA12T3_2	.	DNA	94	tiny	660	high	4927108	chromoarm	1142	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	8560625	8560769	AT2TE35835	.	-	ATDNA12T3_2	.	DNA	144	short	660	high	4927202	chromoarm	1236	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr2	8561843	8567009	AT2TE35840	.	-	ATCOPIA69	Copia	LTR	5166	long	25	low	4928420	chromoarm	1693	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	8575091	8575771	AT2TE35880	.	+	TAG3N1	HAT	DNA	680	short	97	medium	4941668	chromoarm	262	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	8575771	8575792	AT2TE35885	.	+	TAG1	HAT	DNA	21	tiny	28	low	4942348	chromoarm	241	no-CHH	no-RdDM	LowExpressed	.	.	.	.
Chr2	8578620	8578705	AT2TE35895	.	+	RathE1_cons	.	RathE1_cons	85	tiny	213	high	4945197	chromoarm	817	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	8578706	8579124	AT2TE35900	.	+	ATTIRX1C	.	DNA	419	short	39	low	4945282	chromoarm	902	.	.	.	.	.	.	.
Chr2	8579124	8579204	AT2TE35905	.	+	RathE1_cons	.	RathE1_cons	80	tiny	213	high	4945701	chromoarm	1321	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	8601314	8601456	AT2TE36010	.	+	ATCOPIA33	Copia	LTR	142	short	6	low	4967891	chromoarm	557	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	8625897	8626202	AT2TE36130	.	-	ATREP16	MuDR	DNA	305	short	47	low	4992474	chromoarm	1451	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	8626781	8627085	AT2TE36135	.	+	ATREP16	MuDR	DNA	304	short	47	low	4993358	chromoarm	613	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	8641850	8642274	AT2TE36200	.	+	BRODYAGA1A	MuDR	DNA	425	short	586	high	5008426	chromoarm	665	.	.	.	.	.	.	.
Chr2	8654890	8656020	AT2TE36260	.	+	ATREP10D	Helitron	RC	1130	short	1295	high	5021467	chromoarm	697	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	8666940	8667413	AT2TE36320	.	-	ATLINE1_1	L1	LINE	473	short	61	medium	5033517	chromoarm	2205	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	8674672	8675048	AT2TE36360	.	-	HELITRONY1D	Helitron	RC	376	short	756	high	5041249	chromoarm	3136	no-CHH	no-CHH	.	.	.	.	.
Chr2	8689490	8690173	AT2TE36430	.	+	BRODYAGA2	MuDR	DNA	683	short	525	high	5056067	chromoarm	169	no-CHH	no-CHH	.	.	.	.	.
Chr2	8696991	8697133	AT2TE36460	.	+	ATMU2	MuDR	DNA	142	short	64	medium	5063568	chromoarm	425	PolIV-RdDM	no-RdDM	ExpressedAndAnnotated	8695370	8697108	+	transcript_id-"fcafcdb3-9702-46d0-a1af-2c63d16f7916|3"
Chr2	8700908	8700983	AT2TE36470	.	-	ATENSPM10	En-Spm	DNA	75	tiny	81	medium	5067485	chromoarm	29	no-CHH	no-CHH	.	.	.	.	.
Chr2	8707211	8707440	AT2TE36500	.	-	RathE2_cons	.	RathE2_cons	229	short	74	medium	5073788	chromoarm	673	no-CHH	no-CHH	.	.	.	.	.
Chr2	8707613	8708149	AT2TE36505	.	-	HELITRONY2	Helitron	RC	536	short	198	medium	5074190	chromoarm	1075	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	8708149	8710005	AT2TE36510	.	+	ATREP10D	Helitron	RC	1856	short	1295	high	5074726	chromoarm	1611	no-CHH	no-CHH	.	.	.	.	.
Chr2	8725199	8725238	AT2TE36590	.	-	ATREP1	Helitron	RC	39	tiny	498	high	5091776	chromoarm	157	no-CHH	no-CHH	.	.	.	.	.
Chr2	8725238	8725642	AT2TE36595	.	+	ATREP5	Helitron	RC	404	short	624	high	5091815	chromoarm	119	no-CHH	no-CHH	.	.	.	.	.
Chr2	8730656	8732388	AT2TE36620	.	-	ATREP10D	Helitron	RC	1732	short	1295	high	5097233	chromoarm	570	no-CHH	no-CHH	.	.	.	.	.
Chr2	8731518	8732127	AT2TE36625	.	+	ATHPOGON3	Pogo	DNA	609	short	118	medium	5098095	chromoarm	1432	no-CHH	no-CHH	.	.	.	.	.
Chr2	8732388	8732717	AT2TE36630	.	+	ATREP10D	Helitron	RC	329	short	1295	high	5098965	chromoarm	1331	no-CHH	no-CHH	.	.	.	.	.
Chr2	8740314	8740384	AT2TE36670	.	+	ATCOPIA59	Copia	LTR	70	tiny	20	low	5106891	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	8752286	8753097	AT2TE36730	.	-	HELITRONY3	Helitron	RC	811	short	1399	high	5118863	chromoarm	408	no-CHH	no-CHH	.	.	.	.	.
Chr2	8753097	8753199	AT2TE36735	.	+	ATREP15	Helitron	RC	102	short	1003	high	5119674	chromoarm	1219	no-CHH	no-CHH	.	.	.	.	.
Chr2	8753199	8753500	AT2TE36740	.	-	ATREP10B	Helitron	RC	301	short	491	high	5119776	chromoarm	1321	no-CHH	no-CHH	.	.	.	.	.
Chr2	8753964	8754480	AT2TE36745	.	-	ATDNA2T9C	MuDR	DNA	516	short	242	high	5120541	chromoarm	1994	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	8765044	8765132	AT2TE36790	.	+	ATTIR16T3A	.	DNA	88	tiny	106	medium	5131621	chromoarm	1949	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	8783427	8783769	AT2TE36880	.	+	ATGP9B	Gypsy	LTR	342	short	27	low	5150004	chromoarm	937	no-CHH	no-CHH	.	.	.	.	.
Chr2	8796026	8796156	AT2TE36940	.	+	HELITRONY1D	Helitron	RC	130	short	756	high	5162603	chromoarm	46	no-CHH	no-CHH	.	.	.	.	.
Chr2	8805059	8805218	AT2TE36990	.	+	HELITRONY1C	Helitron	RC	159	short	120	medium	5171636	chromoarm	355	no-CHH	no-CHH	.	.	.	.	.
Chr2	8816055	8820891	AT2TE37050	.	-	ATCOPIA72	Copia	LTR	4836	medium	4	low	5182632	chromoarm	262	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	8820774	8818686	-	transcript_id-"5b078211-678c-4a4f-bfc2-a866754738a4|14"
Chr2	8824099	8824178	AT2TE37060	.	-	ATREP5	Helitron	RC	79	tiny	624	high	5190676	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	8824178	8824416	AT2TE37065	.	+	VANDAL17	MuDR	DNA	238	short	178	medium	5190755	chromoarm	56	no-CHH	no-CHH	.	.	.	.	.
Chr2	8824417	8824727	AT2TE37070	.	+	ATTIRX1C	.	DNA	311	short	39	low	5190993	chromoarm	294	.	.	.	.	.	.	.
Chr2	8824727	8825164	AT2TE37075	.	+	ATREP4	Helitron	RC	437	short	832	high	5191304	chromoarm	0	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	8825164	8825220	AT2TE37080	.	+	HELITRONY3	Helitron	RC	56	tiny	1399	high	5191741	chromoarm	0	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	8825488	8826056	AT2TE37085	.	-	HELITRONY3	Helitron	RC	568	short	1399	high	5192065	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	8826056	8826090	AT2TE37090	.	+	BRODYAGA1A	MuDR	DNA	34	tiny	586	high	5192633	chromoarm	186	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	8854204	8854331	AT2TE37230	.	+	ATREP10B	Helitron	RC	127	short	491	high	5220781	chromoarm	1154	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	8854331	8855262	AT2TE37235	.	+	ATREP10	Helitron	RC	931	short	63	medium	5220908	chromoarm	223	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	8870445	8870511	AT2TE37310	.	-	ATLINE1A	L1	LINE	66	tiny	289	high	5237022	chromoarm	1185	no-CHH	no-CHH	.	.	.	.	.
Chr2	8870605	8870936	AT2TE37315	.	+	ATLINE1_3A	L1	LINE	331	short	160	medium	5237182	chromoarm	760	no-CHH	no-CHH	.	.	.	.	.
Chr2	8872053	8872129	AT2TE37320	.	-	HELITRONY3	Helitron	RC	76	tiny	1399	high	5238630	chromoarm	56	no-CHH	no-CHH	.	.	.	.	.
Chr2	8872129	8883513	AT2TE37325	.	-	ATREP4	Helitron	RC	11384	long	832	high	5238706	chromoarm	0	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	8874965	8875218	AT2TE37330	.	-	ATLINE1_6	L1	LINE	253	short	129	medium	5241542	chromoarm	1271	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	8875315	8876422	AT2TE37335	.	+	ATREP10D	Helitron	RC	1107	short	1295	high	5241892	chromoarm	67	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	8876422	8876478	AT2TE37340	.	+	ATREP10D	Helitron	RC	56	tiny	1295	high	5242999	chromoarm	11	no-CHH	no-CHH	.	.	.	.	.
Chr2	8876919	8877581	AT2TE37345	.	-	BRODYAGA2	MuDR	DNA	662	short	525	high	5243496	chromoarm	187	no-CHH	no-CHH	.	.	.	.	.
Chr2	8877581	8877949	AT2TE37350	.	-	ATCOPIA28	Copia	LTR	368	short	81	medium	5244158	chromoarm	200	no-CHH	no-CHH	.	.	.	.	.
Chr2	8883840	8885588	AT2TE37380	.	+	ARNOLDY2	MuDR	DNA	1748	short	288	high	5250417	chromoarm	448	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	8885588	8885780	AT2TE37385	.	+	HELITRONY3	Helitron	RC	192	short	1399	high	5252165	chromoarm	256	no-CHH	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	8885780	8885997	AT2TE37390	.	-	ATREP3	Helitron	RC	217	short	1439	high	5252357	chromoarm	39	PolIV-and-RDR6-RdDM	no-CHH	ExpressedAndAnnotated	8885789	8886549	+	transcript_id-"9bec09ed-aa62-4a67-a07a-5292a2cbb7b7|5"
Chr2	8889318	8889783	AT2TE37400	.	-	HELITRONY1D	Helitron	RC	465	short	756	high	5255895	chromoarm	140	no-CHH	no-CHH	.	.	.	.	.
Chr2	8890286	8890357	AT2TE37405	.	+	ATREP3	Helitron	RC	71	tiny	1439	high	5256863	chromoarm	833	no-CHH	no-CHH	.	.	.	.	.
Chr2	8890357	8890940	AT2TE37410	.	+	ATREP9	Helitron	RC	583	short	201	high	5256934	chromoarm	250	no-CHH	no-CHH	.	.	.	.	.
Chr2	8890940	8891167	AT2TE37415	.	+	ATREP15	Helitron	RC	227	short	1003	high	5257517	chromoarm	23	no-CHH	no-CHH	.	.	.	.	.
Chr2	8893265	8893295	AT2TE37425	.	+	HELITRONY3	Helitron	RC	30	tiny	1399	high	5259842	chromoarm	21	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	8893295	8893462	AT2TE37430	.	+	ATTIR16T3A	.	DNA	167	short	106	medium	5259872	chromoarm	51	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	8893462	8895164	AT2TE37435	.	-	ATREP12	Helitron	RC	1702	short	22	low	5260039	chromoarm	218	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	8895018	8893635	-	transcript_id-"ab111983-13bf-431d-9d4b-39e8cb3a4142|3"
Chr2	8895427	8895557	AT2TE37440	.	+	ATTIR16T3A	.	DNA	130	short	106	medium	5262004	chromoarm	596	no-CHH	no-CHH	.	.	.	.	.
Chr2	8898890	8899234	AT2TE37450	.	-	ATDNA2T9C	MuDR	DNA	344	short	242	high	5265467	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	8907357	8907407	AT2TE37490	.	-	RP1_AT	.	DNA	50	tiny	87	medium	5273934	chromoarm	340	no-CHH	no-CHH	.	.	.	.	.
Chr2	8907407	8908078	AT2TE37495	.	+	ATREP2A	Helitron	RC	671	short	116	medium	5273984	chromoarm	390	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	8908078	8908185	AT2TE37500	.	-	RP1_AT	.	DNA	107	short	87	medium	5274655	chromoarm	1061	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	8908185	8909006	AT2TE37505	.	+	HELITRONY2	Helitron	RC	821	short	198	medium	5274762	chromoarm	460	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr2	8909879	8910535	AT2TE37510	.	-	HELITRONY3	Helitron	RC	656	short	1399	high	5276456	chromoarm	107	no-CHH	no-CHH	.	.	.	.	.
Chr2	8914162	8914214	AT2TE37520	.	-	RathE1_cons	.	RathE1_cons	52	tiny	213	high	5280739	chromoarm	690	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	8914476	8914529	AT2TE37525	.	-	RathE1_cons	.	RathE1_cons	53	tiny	213	high	5281053	chromoarm	1004	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	8914788	8914842	AT2TE37530	.	-	RathE1_cons	.	RathE1_cons	54	tiny	213	high	5281365	chromoarm	1316	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	8915105	8915157	AT2TE37535	.	-	RathE1_cons	.	RathE1_cons	53	tiny	213	high	5281681	chromoarm	1632	.	.	.	.	.	.	.
Chr2	8915420	8915472	AT2TE37540	.	-	RathE1_cons	.	RathE1_cons	53	tiny	213	high	5281996	chromoarm	1947	.	.	.	.	.	.	.
Chr2	8915734	8915786	AT2TE37545	.	-	RathE1_cons	.	RathE1_cons	52	tiny	213	high	5282311	chromoarm	2262	no-CHH	no-CHH	.	.	.	.	.
Chr2	8916049	8916101	AT2TE37550	.	-	RathE1_cons	.	RathE1_cons	53	tiny	213	high	5282625	chromoarm	2576	.	.	.	.	.	.	.
Chr2	8916363	8916416	AT2TE37555	.	-	RathE1_cons	.	RathE1_cons	53	tiny	213	high	5282940	chromoarm	2891	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	8916678	8916728	AT2TE37560	.	-	RathE1_cons	.	RathE1_cons	50	tiny	213	high	5283255	chromoarm	3206	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	8916991	8917043	AT2TE37565	.	-	RathE1_cons	.	RathE1_cons	52	tiny	213	high	5283568	chromoarm	3519	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	8917298	8917491	AT2TE37570	.	-	RathE1_cons	.	RathE1_cons	193	short	213	high	5283875	chromoarm	3532	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	8925714	8925813	AT2TE37610	.	+	ARNOLD2	MuDR	DNA	99	tiny	68	medium	5292291	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	8939277	8939479	AT2TE37680	.	+	BRODYAGA1A	MuDR	DNA	202	short	586	high	5305854	chromoarm	1705	no-CHH	no-RdDM	.	.	.	.	.
Chr2	8940158	8940300	AT2TE37685	.	-	BRODYAGA1A	MuDR	DNA	142	short	586	high	5306735	chromoarm	884	no-CHH	no-CHH	.	.	.	.	.
Chr2	8955517	8955661	AT2TE37760	.	-	ATMU1	MuDR	DNA	144	short	59	medium	5322094	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	8956953	8957576	AT2TE37765	.	+	ATHATN3A	HAT	DNA	623	short	20	low	5323530	chromoarm	216	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	8974573	8975430	AT2TE37850	.	+	ATREP15	Helitron	RC	857	short	1003	high	5341150	chromoarm	173	no-CHH	no-CHH	.	.	.	.	.
Chr2	8975430	8975450	AT2TE37855	.	+	ATREP15	Helitron	RC	20	tiny	1003	high	5342007	chromoarm	219	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	8993389	8993817	AT2TE37940	.	+	ATMUN1	MuDR	DNA	428	short	107	medium	5359966	chromoarm	591	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	9005577	9005954	AT2TE38000	.	+	TSCL	.	LINE?	377	short	81	medium	5372154	chromoarm	223	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	9019574	9020000	AT2TE38070	.	+	ATCOPIA70	Copia	LTR	426	short	8	low	5386151	chromoarm	943	no-CHH	no-CHH	.	.	.	.	.
Chr2	9020292	9020570	AT2TE38075	.	-	ATHILA4A	Gypsy	LTR	278	short	310	high	5386869	chromoarm	373	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	9021982	9022268	AT2TE38080	.	+	ATREP4	Helitron	RC	286	short	832	high	5388559	chromoarm	112	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	9025876	9026027	AT2TE38090	.	-	ATHILA8A	Gypsy	LTR	151	short	97	medium	5392453	chromoarm	129	no-CHH	no-RdDM	.	.	.	.	.
Chr2	9026535	9026610	AT2TE38095	.	-	ATLANTYS3	Gypsy	LTR	75	tiny	142	medium	5393112	chromoarm	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	9029638	9029774	AT2TE38105	.	-	ATREP3	Helitron	RC	136	short	1439	high	5396215	chromoarm	833	no-CHH	no-CHH	.	.	.	.	.
Chr2	9029774	9030696	AT2TE38110	.	+	ATREP1	Helitron	RC	922	short	498	high	5396351	chromoarm	969	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	9030696	9031425	AT2TE38115	.	+	HELITRONY1A	Helitron	RC	729	short	271	high	5397273	chromoarm	1891	no-CHH	no-CHH	.	.	.	.	.
Chr2	9031425	9031706	AT2TE38120	.	+	ATREP10D	Helitron	RC	281	short	1295	high	5398002	chromoarm	2582	no-CHH	no-CHH	.	.	.	.	.
Chr2	9032379	9032883	AT2TE38125	.	-	HELITRONY1D	Helitron	RC	504	short	756	high	5398956	chromoarm	1405	no-CHH	no-CHH	.	.	.	.	.
Chr2	9038476	9039545	AT2TE38150	.	+	ATREP11	Helitron	RC	1069	short	841	high	5405053	chromoarm	888	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	9056410	9056993	AT2TE38240	.	+	ATREP5	Helitron	RC	583	short	624	high	5422987	chromoarm	267	no-CHH	no-CHH	.	.	.	.	.
Chr2	9057250	9059623	AT2TE38245	.	-	ATDNAI27T9A	MuDR	DNA	2373	medium	116	medium	5423827	chromoarm	1107	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	9058516	9058624	AT2TE38250	.	-	VANDAL5A	MuDR	DNA	109	short	56	medium	5425092	chromoarm	2243	.	.	LowExpressed	.	.	.	.
Chr2	9058706	9058903	AT2TE38255	.	-	LIMPET1	MuDR	DNA	198	short	116	medium	5425282	chromoarm	1964	.	.	LowExpressed	.	.	.	.
Chr2	9077939	9078109	AT2TE38350	.	+	ATMU2	MuDR	DNA	170	short	64	medium	5444516	chromoarm	1056	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	9078245	9078297	AT2TE38355	.	-	ATREP10C	Helitron	RC	52	tiny	123	medium	5444822	chromoarm	1362	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	9091056	9091103	AT2TE38410	.	+	HELITRONY1E	Helitron	RC	47	tiny	447	high	5457633	chromoarm	1362	no-CHH	no-CHH	.	.	.	.	.
Chr2	9091103	9091138	AT2TE38415	.	+	HELITRONY1E	Helitron	RC	35	tiny	447	high	5457680	chromoarm	1409	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	9091138	9092376	AT2TE38420	.	+	ATREP11	Helitron	RC	1238	short	841	high	5457715	chromoarm	1444	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	9099080	9099180	AT2TE38450	.	-	ATREP15	Helitron	RC	100	short	1003	high	5465657	chromoarm	313	no-CHH	no-CHH	.	.	.	.	.
Chr2	9099180	9100059	AT2TE38455	.	+	ATREP4	Helitron	RC	879	short	832	high	5465757	chromoarm	413	no-CHH	no-CHH	.	.	.	.	.
Chr2	9100059	9100121	AT2TE38460	.	-	ATREP3	Helitron	RC	62	tiny	1439	high	5466636	chromoarm	562	no-CHH	no-CHH	.	.	.	.	.
Chr2	9121932	9121957	AT2TE38570	.	+	ATCOPIA74	Copia	LTR	25	tiny	7	low	5488509	chromoarm	3640	no-CHH	no-RdDM	LowExpressed	.	.	.	.
Chr2	9121957	9125818	AT2TE38575	.	+	ATCOPIA74	Copia	LTR	3861	medium	7	low	5488534	chromoarm	683	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	9126264	9126365	AT2TE38580	.	+	ARNOLD2	MuDR	DNA	101	short	68	medium	5492841	chromoarm	136	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	9132014	9132242	AT2TE38610	.	+	ATCOPIA38	Copia	LTR	228	short	9	low	5498591	chromoarm	386	no-CHH	no-CHH	.	.	.	.	.
Chr2	9149426	9149549	AT2TE38700	.	-	ATREP10B	Helitron	RC	123	short	491	high	5516003	chromoarm	176	no-CHH	no-CHH	.	.	.	.	.
Chr2	9161384	9161867	AT2TE38760	.	+	ATLINEIII	L1	LINE	483	short	196	medium	5527961	chromoarm	835	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	9161867	9161969	AT2TE38765	.	-	ATMU6	MuDR	DNA	102	short	26	low	5528444	chromoarm	733	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	9171666	9171691	AT2TE38810	.	+	ATMU8	MuDR	DNA	25	tiny	9	low	5538243	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	9185068	9185677	AT2TE38880	.	+	ATREP10D	Helitron	RC	609	short	1295	high	5551645	chromoarm	2712	no-CHH	no-CHH	.	.	.	.	.
Chr2	9185677	9185740	AT2TE38885	.	-	ATREP10D	Helitron	RC	63	tiny	1295	high	5552254	chromoarm	3321	no-CHH	no-CHH	.	.	.	.	.
Chr2	9185740	9186954	AT2TE38890	.	-	ATREP4	Helitron	RC	1214	short	832	high	5552317	chromoarm	3384	no-CHH	no-CHH	.	.	.	.	.
Chr2	9186954	9186989	AT2TE38895	.	+	ATREP3	Helitron	RC	35	tiny	1439	high	5553531	chromoarm	4598	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr2	9187491	9191655	AT2TE38900	.	-	ATCOPIA76	Copia	LTR	4164	medium	7	low	5554068	chromoarm	3940	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	9191655	9193725	AT2TE38905	.	-	ATGP2N	Gypsy	LTR	2070	medium	54	medium	5558232	chromoarm	1870	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr2	9193725	9195279	AT2TE38910	.	-	ATCOPIA76	Copia	LTR	1554	short	7	low	5560302	chromoarm	316	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr2	9195279	9195300	AT2TE38915	.	-	ATCOPIA76	Copia	LTR	21	tiny	7	low	5561856	chromoarm	295	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	9196053	9196674	AT2TE38920	.	+	ATREP11	Helitron	RC	621	short	841	high	5562630	chromoarm	127	no-CHH	no-CHH	.	.	.	.	.
Chr2	9197045	9197225	AT2TE38925	.	-	RathE1_cons	.	RathE1_cons	181	short	213	high	5563621	chromoarm	1118	.	.	.	.	.	.	.
Chr2	9224520	9224792	AT2TE39060	.	-	ATREP4	Helitron	RC	272	short	832	high	5591097	chromoarm	783	no-CHH	no-CHH	.	.	.	.	.
Chr2	9224792	9225472	AT2TE39065	.	-	ATREP1	Helitron	RC	680	short	498	high	5591369	chromoarm	1055	no-CHH	no-CHH	.	.	.	.	.
Chr2	9225477	9226049	AT2TE39070	.	-	ATREP2	Helitron	RC	572	short	164	medium	5592054	chromoarm	1159	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	9226049	9226084	AT2TE39075	.	-	ATREP14	Helitron	RC	35	tiny	47	low	5592626	chromoarm	1124	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr2	9228586	9228630	AT2TE39085	.	-	ATREP11A	Helitron	RC	44	tiny	95	medium	5595163	chromoarm	0	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr2	9228630	9229177	AT2TE39090	.	-	ATREP2	Helitron	RC	547	short	164	medium	5595207	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	9231593	9232346	AT2TE39100	.	-	ATREP15	Helitron	RC	753	short	1003	high	5598170	chromoarm	296	no-CHH	no-CHH	.	.	.	.	.
Chr2	9232346	9232484	AT2TE39105	.	-	ATREP11	Helitron	RC	138	short	841	high	5598923	chromoarm	1049	no-CHH	no-CHH	.	.	.	.	.
Chr2	9234380	9235005	AT2TE39110	.	+	AT9TSD1	MuDR	DNA	625	short	55	medium	5600957	chromoarm	1623	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	9235005	9235036	AT2TE39115	.	-	ATDNA2T9C	MuDR	DNA	31	tiny	242	high	5601582	chromoarm	1592	no-CHH	no-CHH	.	.	.	.	.
Chr2	9261831	9262086	AT2TE39250	.	-	DT1	Mariner	DNA	255	short	123	medium	5628408	chromoarm	1412	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	9262086	9262271	AT2TE39255	.	+	ATMU2	MuDR	DNA	185	short	64	medium	5628663	chromoarm	1312	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	9262762	9263580	AT2TE39260	.	-	HELITRONY3	Helitron	RC	818	short	1399	high	5629339	chromoarm	3	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	9263580	9263632	AT2TE39265	.	+	ATREP1	Helitron	RC	52	tiny	498	high	5630157	chromoarm	0	no-CHH	no-RdDM	.	.	.	.	.
Chr2	9264148	9264472	AT2TE39270	.	-	HELITRON2	Helitron	RC	324	short	194	medium	5630725	chromoarm	94	no-CHH	no-CHH	.	.	.	.	.
Chr2	9264472	9264854	AT2TE39275	.	+	BRODYAGA2	MuDR	DNA	382	short	525	high	5631049	chromoarm	418	no-CHH	no-CHH	.	.	.	.	.
Chr2	9277131	9277339	AT2TE39330	.	+	DT1	Mariner	DNA	208	short	123	medium	5643708	chromoarm	319	no-CHH	no-CHH	.	.	.	.	.
Chr2	9279044	9279821	AT2TE39335	.	+	ATREP5	Helitron	RC	777	short	624	high	5645621	chromoarm	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	9310081	9310128	AT2TE39480	.	-	ATREP3	Helitron	RC	47	tiny	1439	high	5676658	chromoarm	39	no-CHH	no-CHH	.	.	.	.	.
Chr2	9310128	9310249	AT2TE39485	.	-	HELITRONY1C	Helitron	RC	121	short	120	medium	5676705	chromoarm	86	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	9310249	9311451	AT2TE39490	.	-	ATREP11	Helitron	RC	1202	short	841	high	5676826	chromoarm	207	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	9311451	9311617	AT2TE39495	.	+	ATREP1	Helitron	RC	166	short	498	high	5678028	chromoarm	1409	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	9311617	9311652	AT2TE39500	.	+	ATREP1	Helitron	RC	35	tiny	498	high	5678194	chromoarm	1575	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	9311658	9313019	AT2TE39505	.	-	VANDAL18NA	MuDR	DNA	1361	short	24	low	5678235	chromoarm	1616	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	9313019	9313109	AT2TE39510	.	+	ATREP5	Helitron	RC	90	tiny	624	high	5679596	chromoarm	2158	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	9313109	9313145	AT2TE39515	.	+	ATREP4	Helitron	RC	36	tiny	832	high	5679686	chromoarm	2122	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	9313145	9315252	AT2TE39520	.	+	HELITRONY3	Helitron	RC	2107	medium	1399	high	5679722	chromoarm	15	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	9330500	9330797	AT2TE39600	.	+	ATSINE4	.	SINE	297	short	98	medium	5697077	chromoarm	291	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	9334644	9335281	AT2TE39610	.	+	BRODYAGA1	MuDR	DNA	637	short	251	high	5701221	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	9344286	9344598	AT2TE39660	.	+	ATLANTYS1	Gypsy	LTR	312	short	153	medium	5710863	chromoarm	0	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	9345031	9345355	AT2TE39665	.	+	SIMPLEGUY1	Harbinger	DNA	325	short	116	medium	5711607	chromoarm	0	.	.	.	.	.	.	.
Chr2	9349361	9350577	AT2TE39680	.	-	HELITRONY3	Helitron	RC	1216	short	1399	high	5715938	chromoarm	407	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	9349537	9350398	AT2TE39685	.	-	ATREP15	Helitron	RC	861	short	1003	high	5716114	chromoarm	583	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	9369610	9370197	AT2TE39780	.	+	ATREP1	Helitron	RC	587	short	498	high	5736187	chromoarm	782	no-CHH	no-CHH	.	.	.	.	.
Chr2	9378909	9379315	AT2TE39820	.	-	ATLINE1_2	L1	LINE	406	short	41	low	5745486	chromoarm	262	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	9380196	9380456	AT2TE39825	.	-	ATHILA7	Gypsy	LTR	260	short	134	medium	5746773	chromoarm	379	no-CHH	no-CHH	.	.	.	.	.
Chr2	9382343	9382607	AT2TE39830	.	-	TNAT1A	.	DNA	264	short	162	medium	5748920	chromoarm	287	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	9382607	9383290	AT2TE39835	.	-	TNAT1A	.	DNA	683	short	162	medium	5749184	chromoarm	311	no-CHH	no-CHH	.	.	.	.	.
Chr2	9383292	9383429	AT2TE39840	.	-	ATREP4	Helitron	RC	137	short	832	high	5749869	chromoarm	172	no-CHH	no-CHH	.	.	.	.	.
Chr2	9387632	9387963	AT2TE39860	.	+	ATMU5	MuDR	DNA	331	short	24	low	5754209	chromoarm	0	no-CHH	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	9390571	9390701	AT2TE39870	.	-	ATHATN1	HAT	DNA	130	short	69	medium	5757148	chromoarm	121	no-CHH	no-CHH	.	.	.	.	.
Chr2	9418835	9418859	AT2TE40010	.	-	HELITRONY1E	Helitron	RC	24	tiny	447	high	5785412	chromoarm	251	no-CHH	no-CHH	.	.	.	.	.
Chr2	9418859	9419033	AT2TE40015	.	-	HELITRONY1D	Helitron	RC	174	short	756	high	5785436	chromoarm	275	no-CHH	no-CHH	.	.	.	.	.
Chr2	9419033	9419969	AT2TE40020	.	-	ATREP15	Helitron	RC	936	short	1003	high	5785610	chromoarm	350	PolIV-and-RDR6-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	9419969	9420219	AT2TE40025	.	+	ATREP10D	Helitron	RC	250	short	1295	high	5786546	chromoarm	100	no-RdDM	no-CHH	.	.	.	.	.
Chr2	9424212	9424295	AT2TE40040	.	-	ATREP11	Helitron	RC	83	tiny	841	high	5790789	chromoarm	38	no-CHH	no-CHH	.	.	.	.	.
Chr2	9424295	9424484	AT2TE40045	.	+	HELITRONY3	Helitron	RC	189	short	1399	high	5790872	chromoarm	121	no-CHH	no-CHH	.	.	.	.	.
Chr2	9424484	9425181	AT2TE40050	.	+	ATREP3	Helitron	RC	697	short	1439	high	5791061	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	9432662	9433854	AT2TE40090	.	+	ATREP1	Helitron	RC	1192	short	498	high	5799239	chromoarm	42	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	9437929	9438226	AT2TE40110	.	-	HELITRON4	Helitron	RC	297	short	199	medium	5804506	chromoarm	1447	no-CHH	no-CHH	.	.	.	.	.
Chr2	9438226	9438509	AT2TE40115	.	+	HELITRONY1D	Helitron	RC	283	short	756	high	5804803	chromoarm	1744	no-CHH	no-CHH	.	.	.	.	.
Chr2	9438509	9438539	AT2TE40120	.	+	HELITRONY2	Helitron	RC	30	tiny	198	medium	5805086	chromoarm	2027	no-CHH	no-CHH	.	.	.	.	.
Chr2	9446506	9447387	AT2TE40160	.	+	ATLINE1_4	L1	LINE	881	short	102	medium	5813083	chromoarm	1787	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	9447387	9449390	AT2TE40165	.	+	ATLINE1_5	L1	LINE	2003	medium	91	medium	5813964	chromoarm	651	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	9454492	9455139	AT2TE40190	.	-	ATREP3	Helitron	RC	647	short	1439	high	5821069	chromoarm	93	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	9455140	9455234	AT2TE40195	.	+	ATREP1	Helitron	RC	95	tiny	498	high	5821716	chromoarm	740	.	.	.	.	.	.	.
Chr2	9455234	9456574	AT2TE40200	.	+	ATREP1	Helitron	RC	1340	short	498	high	5821811	chromoarm	835	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	9456574	9456750	AT2TE40205	.	+	HELITRONY1B	Helitron	RC	176	short	414	high	5823151	chromoarm	1260	no-CHH	no-CHH	.	.	.	.	.
Chr2	9468319	9468352	AT2TE40260	.	-	ATREP10B	Helitron	RC	33	tiny	491	high	5834896	chromoarm	631	no-CHH	no-CHH	.	.	.	.	.
Chr2	9468352	9469673	AT2TE40265	.	-	ATREP10D	Helitron	RC	1321	short	1295	high	5834929	chromoarm	664	no-CHH	no-CHH	.	.	.	.	.
Chr2	9470622	9470883	AT2TE40270	.	-	ATSINE2A	.	SINE	261	short	33	low	5837199	chromoarm	715	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	9482392	9482479	AT2TE40330	.	-	ATCOPIA23	Copia	LTR	87	tiny	8	low	5848969	chromoarm	1952	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	9484516	9484592	AT2TE40340	.	+	RathE2_cons	.	RathE2_cons	76	tiny	74	medium	5851093	chromoarm	4008	no-CHH	DCL3-RdDM	.	.	.	.	.
Chr2	9484719	9485436	AT2TE40345	.	-	ATGP5	Gypsy	LTR	717	short	86	medium	5851296	chromoarm	3164	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	9485106	9485278	AT2TE40350	.	-	ATGP6	Gypsy	LTR	172	short	25	low	5851683	chromoarm	3322	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	9486208	9486375	AT2TE40355	.	-	HELITRONY3A	Helitron	RC	167	short	49	low	5852785	chromoarm	2225	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	9486826	9487243	AT2TE40360	.	-	ATREP19	.	DNA	417	short	189	medium	5853403	chromoarm	1357	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	9491924	9492336	AT2TE40380	.	-	ATLANTYS3	Gypsy	LTR	412	short	142	medium	5858501	chromoarm	542	no-CHH	no-CHH	.	.	.	.	.
Chr2	9492537	9492668	AT2TE40385	.	-	HELITRONY1A	Helitron	RC	131	short	271	high	5859114	chromoarm	210	no-CHH	no-CHH	.	.	.	.	.
Chr2	9494092	9494169	AT2TE40390	.	-	ATREP4	Helitron	RC	77	tiny	832	high	5860669	chromoarm	137	no-CHH	no-CHH	.	.	.	.	.
Chr2	9494169	9494802	AT2TE40395	.	+	ATREP11	Helitron	RC	633	short	841	high	5860746	chromoarm	214	no-CHH	no-CHH	.	.	.	.	.
Chr2	9496017	9496051	AT2TE40400	.	+	ATLINE1_2	L1	LINE	34	tiny	41	low	5862594	chromoarm	169	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	9496051	9497136	AT2TE40405	.	+	ATLINE1_1	L1	LINE	1085	short	61	medium	5862628	chromoarm	203	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	9511885	9511906	AT2TE40470	.	+	ATREP10D	Helitron	RC	21	tiny	1295	high	5878462	chromoarm	805	no-CHH	no-CHH	.	.	.	.	.
Chr2	9511906	9513173	AT2TE40475	.	-	ATREP4	Helitron	RC	1267	short	832	high	5878483	chromoarm	167	no-CHH	no-CHH	.	.	.	.	.
Chr2	9524961	9525288	AT2TE40530	.	-	ATLINE1_3A	L1	LINE	327	short	160	medium	5891538	chromoarm	1181	no-CHH	no-CHH	.	.	.	.	.
Chr2	9525406	9525901	AT2TE40535	.	-	ATREP1	Helitron	RC	495	short	498	high	5891983	chromoarm	568	no-CHH	no-CHH	.	.	.	.	.
Chr2	9537547	9537878	AT2TE40590	.	+	TSCL	.	LINE?	331	short	81	medium	5904124	chromoarm	521	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	9552989	9553020	AT2TE40670	.	-	ATREP11	Helitron	RC	31	tiny	841	high	5919566	chromoarm	1136	no-CHH	no-CHH	.	.	.	.	.
Chr2	9553020	9553872	AT2TE40675	.	-	ATREP15	Helitron	RC	852	short	1003	high	5919597	chromoarm	284	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	9557623	9557774	AT2TE40685	.	+	ATHILA0_I	Gypsy	LTR	151	short	138	medium	5924200	chromoarm	1750	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	9557862	9558213	AT2TE40690	.	-	ATHILA5	Gypsy	LTR	351	short	131	medium	5924439	chromoarm	1989	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	9558213	9558409	AT2TE40695	.	-	ATHILA5	Gypsy	LTR	196	short	131	medium	5924790	chromoarm	2340	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	9558426	9558494	AT2TE40700	.	+	ATHILA5	Gypsy	LTR	68	tiny	131	medium	5925003	chromoarm	2553	RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr2	9564940	9565430	AT2TE40730	.	-	VANDAL17	MuDR	DNA	490	short	178	medium	5931517	chromoarm	468	no-CHH	no-CHH	.	.	.	.	.
Chr2	9584448	9584476	AT2TE40830	.	-	ATREP15	Helitron	RC	28	tiny	1003	high	5951025	chromoarm	845	no-CHH	no-CHH	.	.	.	.	.
Chr2	9584491	9585378	AT2TE40835	.	+	ATREP1	Helitron	RC	887	short	498	high	5951068	chromoarm	513	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	9585378	9585550	AT2TE40840	.	+	ATREP3	Helitron	RC	172	short	1439	high	5951955	chromoarm	341	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	9594597	9594765	AT2TE40890	.	-	VANDAL22	MuDR	DNA	168	short	48	low	5961174	chromoarm	173	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	9595648	9595828	AT2TE40895	.	-	VANDAL22	MuDR	DNA	181	short	48	low	5962224	chromoarm	788	.	.	.	.	.	.	.
Chr2	9611960	9611997	AT2TE40970	.	-	ATREP15	Helitron	RC	37	tiny	1003	high	5978537	chromoarm	1804	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	9611997	9612944	AT2TE40975	.	-	ATREP11	Helitron	RC	947	short	841	high	5978574	chromoarm	1841	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	9612945	9612971	AT2TE40980	.	-	ATREP11	Helitron	RC	27	tiny	841	high	5979521	chromoarm	2788	.	.	.	.	.	.	.
Chr2	9612971	9613283	AT2TE40985	.	-	HELITRONY1D	Helitron	RC	312	short	756	high	5979548	chromoarm	2815	no-CHH	no-CHH	.	.	.	.	.
Chr2	9632116	9633214	AT2TE41080	.	+	ATREP3	Helitron	RC	1098	short	1439	high	5998693	chromoarm	1276	no-CHH	no-CHH	.	.	.	.	.
Chr2	9633214	9633547	AT2TE41085	.	+	HELITRONY3	Helitron	RC	333	short	1399	high	5999791	chromoarm	2374	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	9633547	9635121	AT2TE41090	.	+	SIMPLEHAT2	HAT	DNA	1574	short	73	medium	6000124	chromoarm	1755	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	9633847	9638613	+	transcript_id-"1fc532a6-407f-4522-af25-ab0dc79f01ee|12"
Chr2	9635122	9635196	AT2TE41095	.	-	SIMPLEHAT2	HAT	DNA	75	tiny	73	medium	6001698	chromoarm	1680	.	.	LowExpressed	.	.	.	.
Chr2	9639364	9640072	AT2TE41110	.	-	ATREP11	Helitron	RC	708	short	841	high	6005941	chromoarm	905	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr2	9643127	9643235	AT2TE41120	.	+	ATREP5	Helitron	RC	108	short	624	high	6009704	chromoarm	2197	no-CHH	no-CHH	.	.	.	.	.
Chr2	9643235	9643560	AT2TE41125	.	+	ATREP10A	Helitron	RC	325	short	279	high	6009812	chromoarm	1872	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	9644111	9644499	AT2TE41130	.	-	ATLINE1A	L1	LINE	388	short	289	high	6010688	chromoarm	933	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	9644499	9645243	AT2TE41135	.	+	ATREP10D	Helitron	RC	744	short	1295	high	6011076	chromoarm	189	no-CHH	no-CHH	.	.	.	.	.
Chr2	9653804	9654719	AT2TE41170	.	+	ATIS112A	Harbinger	DNA	915	short	173	medium	6020381	chromoarm	2624	RDR6-RdDM	no-RdDM	ExpressedAndAnnotated	9652523	9654707	+	transcript_id-"9bfb800a-4a4a-4618-b090-9a66702b2ec5|3"
Chr2	9654887	9655175	AT2TE41175	.	+	HELITRONY1D	Helitron	RC	288	short	756	high	6021464	chromoarm	2168	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	9652494,9652701	9654979,9654958	+,+	transcript_id-"4fac09ea-2351-4963-b23a-455c1a493a35|236",transcript_id-"d50e3861-c0ca-4a8b-b6c3-c63abf37d7b9|3"
Chr2	9655175	9656263	AT2TE41180	.	+	BOMZH1	MuDR	DNA	1088	short	28	low	6021752	chromoarm	1080	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	9656263	9656798	AT2TE41185	.	-	ARNOLDY2	MuDR	DNA	535	short	288	high	6022840	chromoarm	545	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	9676564	9676747	AT2TE41280	.	+	ATDNA2T9C	MuDR	DNA	183	short	242	high	6043141	chromoarm	1264	no-CHH	no-CHH	.	.	.	.	.
Chr2	9682004	9682161	AT2TE41310	.	-	ATENSPM6	En-Spm	DNA	157	short	151	medium	6048581	chromoarm	2696	no-CHH	no-CHH	.	.	.	.	.
Chr2	9682625	9682799	AT2TE41315	.	-	ATREP4	Helitron	RC	174	short	832	high	6049202	chromoarm	2058	no-CHH	no-CHH	.	.	.	.	.
Chr2	9682799	9683254	AT2TE41320	.	-	HELITRONY3	Helitron	RC	455	short	1399	high	6049376	chromoarm	1603	no-CHH	no-CHH	.	.	.	.	.
Chr2	9683254	9684096	AT2TE41325	.	+	HELITRONY1B	Helitron	RC	842	short	414	high	6049831	chromoarm	761	no-CHH	no-CHH	.	.	.	.	.
Chr2	9686924	9687779	AT2TE41335	.	+	ATREP15	Helitron	RC	855	short	1003	high	6053501	chromoarm	603	no-CHH	no-CHH	.	.	.	.	.
Chr2	9688163	9688350	AT2TE41340	.	+	ATDNA12T3_2	.	DNA	187	short	660	high	6054740	chromoarm	1644	no-CHH	no-CHH	.	.	.	.	.
Chr2	9692172	9692783	AT2TE41350	.	+	ARNOLD2	MuDR	DNA	612	short	68	medium	6058748	chromoarm	248	.	.	.	.	.	.	.
Chr2	9694685	9694719	AT2TE41355	.	-	ATREP3	Helitron	RC	34	tiny	1439	high	6061262	chromoarm	1212	no-CHH	no-CHH	.	.	.	.	.
Chr2	9694719	9694743	AT2TE41360	.	+	ATREP10D	Helitron	RC	24	tiny	1295	high	6061296	chromoarm	1188	no-CHH	no-CHH	.	.	.	.	.
Chr2	9694743	9694847	AT2TE41365	.	+	ATREP10C	Helitron	RC	104	short	123	medium	6061320	chromoarm	1084	no-CHH	no-CHH	.	.	.	.	.
Chr2	9694847	9695853	AT2TE41370	.	-	ATREP4	Helitron	RC	1006	short	832	high	6061424	chromoarm	78	no-CHH	no-CHH	.	.	.	.	.
Chr2	9695853	9695891	AT2TE41375	.	+	ARNOLDY2	MuDR	DNA	38	tiny	288	high	6062430	chromoarm	40	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	9697812	9698093	AT2TE41380	.	+	ATENSPM9	En-Spm	DNA	281	short	97	medium	6064389	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	9698093	9698140	AT2TE41385	.	+	ATENSPM5	En-Spm	DNA	47	tiny	111	medium	6064670	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	9698612	9699363	AT2TE41390	.	+	VANDAL17	MuDR	DNA	751	short	178	medium	6065189	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	9702866	9703253	AT2TE41400	.	-	ATREP10B	Helitron	RC	388	short	491	high	6069442	chromoarm	1695	.	.	.	.	.	.	.
Chr2	9708858	9709863	AT2TE41430	.	+	ATREP3	Helitron	RC	1005	short	1439	high	6075435	chromoarm	10	no-CHH	no-CHH	.	.	.	.	.
Chr2	9709863	9709977	AT2TE41435	.	+	ATREP11	Helitron	RC	114	short	841	high	6076440	chromoarm	1015	no-CHH	no-CHH	.	.	.	.	.
Chr2	9711838	9711975	AT2TE41440	.	-	ATDNA12T3_2	.	DNA	137	short	660	high	6078415	chromoarm	315	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	9712154	9712783	AT2TE41445	.	+	HELITRONY3	Helitron	RC	629	short	1399	high	6078731	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	9712783	9712810	AT2TE41450	.	+	BRODYAGA1A	MuDR	DNA	27	tiny	586	high	6079360	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	9713523	9713904	AT2TE41455	.	-	ATCOPIA46	Copia	LTR	381	short	7	low	6080100	chromoarm	522	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	9716959	9717127	AT2TE41465	.	-	ATIS112A	Harbinger	DNA	168	short	173	medium	6083536	chromoarm	663	no-CHH	no-CHH	.	.	.	.	.
Chr2	9717384	9717639	AT2TE41470	.	-	ATIS112A	Harbinger	DNA	255	short	173	medium	6083961	chromoarm	151	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	9723231	9723298	AT2TE41500	.	+	ATHILA4C	Gypsy	LTR	67	tiny	206	high	6089808	chromoarm	648	no-CHH	no-CHH	.	.	.	.	.
Chr2	9723298	9723517	AT2TE41505	.	+	ATMUNX1	MuDR	DNA	219	short	155	medium	6089875	chromoarm	429	no-CHH	no-CHH	.	.	.	.	.
Chr2	9726309	9726374	AT2TE41515	.	-	HELITRONY1D	Helitron	RC	65	tiny	756	high	6092886	chromoarm	39	no-CHH	no-CHH	.	.	.	.	.
Chr2	9726374	9726559	AT2TE41520	.	+	HELITRONY3	Helitron	RC	185	short	1399	high	6092951	chromoarm	104	no-CHH	no-CHH	.	.	.	.	.
Chr2	9726559	9727378	AT2TE41525	.	-	ATREP4	Helitron	RC	819	short	832	high	6093136	chromoarm	289	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	9736179	9736424	AT2TE41560	.	-	ATENSPM9	En-Spm	DNA	245	short	97	medium	6102756	chromoarm	1241	PolIV-and-RDR6-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	9736443	9736633	AT2TE41565	.	-	ATREP7	Helitron	RC	190	short	164	medium	6103020	chromoarm	1032	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	9738977	9739256	AT2TE41575	.	+	ATREP16	MuDR	DNA	279	short	47	low	6105554	chromoarm	219	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	9754707	9754800	AT2TE41650	.	-	ATREP10D	Helitron	RC	93	tiny	1295	high	6121284	chromoarm	0	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr2	9754804	9755035	AT2TE41655	.	-	ATMUNX1	MuDR	DNA	231	short	155	medium	6121381	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	9756759	9756823	AT2TE41660	.	-	ATCOPIA32B	Copia	LTR	64	tiny	10	low	6123336	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	9757155	9757460	AT2TE41665	.	+	ATREP4	Helitron	RC	305	short	832	high	6123732	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	9757460	9757491	AT2TE41670	.	+	ATREP1	Helitron	RC	31	tiny	498	high	6124037	chromoarm	40	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	9757491	9758854	AT2TE41675	.	+	ATREP3	Helitron	RC	1363	short	1439	high	6124068	chromoarm	71	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	9759124	9759422	AT2TE41680	.	+	ATREP19	.	DNA	298	short	189	medium	6125701	chromoarm	343	no-CHH	no-CHH	.	.	.	.	.
Chr2	9761213	9761285	AT2TE41685	.	+	ATCOPIA95	Copia	LTR	72	tiny	72	medium	6127790	chromoarm	119	no-CHH	no-CHH	.	.	.	.	.
Chr2	9761445	9761658	AT2TE41690	.	-	ARNOLDY2	MuDR	DNA	213	short	288	high	6128022	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	9762904	9762992	AT2TE41695	.	-	ATLANTYS3	Gypsy	LTR	88	tiny	142	medium	6129481	chromoarm	0	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	9763022	9763632	AT2TE41700	.	-	ATLANTYS2	Gypsy	LTR	610	short	179	medium	6129599	chromoarm	0	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	9771621	9771992	AT2TE41740	.	-	BRODYAGA1A	MuDR	DNA	371	short	586	high	6138198	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	9772960	9773082	AT2TE41745	.	-	HELITRONY2	Helitron	RC	122	short	198	medium	6139537	chromoarm	28	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	9773835	9774088	AT2TE41750	.	-	ATLINE2	L1	LINE	253	short	138	medium	6140412	chromoarm	786	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	9774519	9774633	AT2TE41755	.	+	ATHPOGON1	Pogo	DNA	114	short	174	medium	6141096	chromoarm	241	no-CHH	no-CHH	.	.	.	.	.
Chr2	9778365	9778642	AT2TE41765	.	+	ATDNA2T9C	MuDR	DNA	277	short	242	high	6144942	chromoarm	110	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	9783320	9783647	AT2TE41780	.	+	ATDNA12T3_2	.	DNA	327	short	660	high	6149897	chromoarm	232	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	9790978	9791161	AT2TE41820	.	+	ATCOPIA45	Copia	LTR	183	short	20	low	6157555	chromoarm	980	no-CHH	no-CHH	.	.	.	.	.
Chr2	9791161	9791512	AT2TE41825	.	+	ATTIRX1D	.	DNA	351	short	28	low	6157738	chromoarm	771	no-RdDM	no-CHH	.	.	.	.	.
Chr2	9794963	9795098	AT2TE41835	.	+	RathE1_cons	.	RathE1_cons	135	short	213	high	6161540	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	9795834	9796075	AT2TE41840	.	-	ATLINE1A	L1	LINE	241	short	289	high	6162411	chromoarm	93	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	9796432	9796472	AT2TE41845	.	-	HELITRONY3	Helitron	RC	40	tiny	1399	high	6163009	chromoarm	691	no-CHH	no-CHH	.	.	.	.	.
Chr2	9796484	9798016	AT2TE41850	.	+	ARNOLDY2	MuDR	DNA	1532	short	288	high	6163061	chromoarm	743	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	9798016	9798047	AT2TE41855	.	+	ARNOLDY2	MuDR	DNA	31	tiny	288	high	6164593	chromoarm	795	no-CHH	no-CHH	.	.	.	.	.
Chr2	9798066	9798471	AT2TE41860	.	+	HELITRONY3	Helitron	RC	405	short	1399	high	6164643	chromoarm	371	no-CHH	no-CHH	.	.	.	.	.
Chr2	9798471	9798542	AT2TE41865	.	-	BOMZH2	MuDR	DNA	71	tiny	47	low	6165048	chromoarm	300	no-CHH	no-CHH	.	.	.	.	.
Chr2	9807800	9808378	AT2TE41910	.	+	ATCOPIA87	Copia	LTR	578	short	19	low	6174377	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	9818922	9819103	AT2TE41960	.	+	ATTIRTA1	Tc1	DNA	181	short	95	medium	6185499	chromoarm	2901	no-CHH	no-CHH	.	.	.	.	.
Chr2	9836384	9836471	AT2TE42050	.	+	ATREP14	Helitron	RC	87	tiny	47	low	6202961	chromoarm	149	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr2	9836471	9837264	AT2TE42055	.	-	HELITRONY1B	Helitron	RC	793	short	414	high	6203048	chromoarm	236	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	9837264	9837291	AT2TE42060	.	-	ATREP10B	Helitron	RC	27	tiny	491	high	6203841	chromoarm	272	no-CHH	no-CHH	.	.	.	.	.
Chr2	9839044	9839146	AT2TE42065	.	+	ATCOPIA24	Copia	LTR	102	short	27	low	6205621	chromoarm	0	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	9839876	9840354	AT2TE42070	.	+	VANDAL8	MuDR	DNA	478	short	123	medium	6206453	chromoarm	177	no-CHH	no-CHH	.	.	.	.	.
Chr2	9852040	9853022	AT2TE42130	.	+	SIMPLEGUY1	Harbinger	DNA	982	short	116	medium	6218617	chromoarm	609	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	9854080	9854945	AT2TE42135	.	+	ATREP5	Helitron	RC	865	short	624	high	6220657	chromoarm	17	no-RdDM	no-CHH	.	.	.	.	.
Chr2	9854945	9855052	AT2TE42140	.	+	HELITRONY1E	Helitron	RC	107	short	447	high	6221522	chromoarm	804	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	9859131	9859152	AT2TE42160	.	-	BRODYAGA1	MuDR	DNA	21	tiny	251	high	6225708	chromoarm	566	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	9859152	9859893	AT2TE42165	.	-	ATREP1	Helitron	RC	741	short	498	high	6225729	chromoarm	587	no-CHH	no-CHH	.	.	.	.	.
Chr2	9859893	9860512	AT2TE42170	.	-	ATREP2	Helitron	RC	619	short	164	medium	6226470	chromoarm	1328	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	9860513	9861003	AT2TE42175	.	-	ATREP5	Helitron	RC	490	short	624	high	6227090	chromoarm	1466	no-CHH	no-CHH	.	.	.	.	.
Chr2	9865710	9865874	AT2TE42190	.	+	ATREP18	.	DNA	164	short	391	high	6232287	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	9883412	9884282	AT2TE42280	.	+	ATREP15	Helitron	RC	870	short	1003	high	6249989	chromoarm	15	no-CHH	no-CHH	.	.	.	.	.
Chr2	9885233	9885584	AT2TE42285	.	+	ATMUNX1	MuDR	DNA	351	short	155	medium	6251810	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	9888078	9888263	AT2TE42295	.	-	ATHILA8A	Gypsy	LTR	185	short	97	medium	6254655	chromoarm	1326	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	9888470	9888819	AT2TE42300	.	-	ATHILA8B	Gypsy	LTR	349	short	78	medium	6255047	chromoarm	1718	no-CHH	no-CHH	.	.	.	.	.
Chr2	9890793	9891246	AT2TE42310	.	-	HELITRONY1B	Helitron	RC	453	short	414	high	6257370	chromoarm	1469	no-CHH	no-CHH	.	.	.	.	.
Chr2	9891246	9891387	AT2TE42315	.	-	ATREP2A	Helitron	RC	141	short	116	medium	6257823	chromoarm	1328	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	9891388	9891735	AT2TE42320	.	-	ATREP2A	Helitron	RC	348	short	116	medium	6257964	chromoarm	980	.	.	.	.	.	.	.
Chr2	9891735	9892446	AT2TE42325	.	-	ATREP10B	Helitron	RC	711	short	491	high	6258312	chromoarm	269	no-CHH	no-CHH	.	.	.	.	.
Chr2	9892446	9892547	AT2TE42330	.	+	HELITRONY3	Helitron	RC	101	short	1399	high	6259023	chromoarm	168	no-CHH	no-CHH	.	.	.	.	.
Chr2	9896683	9896797	AT2TE42350	.	-	TAG2	HAT	DNA	114	short	86	medium	6263260	chromoarm	358	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	9896797	9897276	AT2TE42355	.	+	SIMPLEGUY1	Harbinger	DNA	479	short	116	medium	6263374	chromoarm	472	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	9897280	9897440	AT2TE42360	.	-	TAG2	HAT	DNA	160	short	86	medium	6263857	chromoarm	368	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	9899448	9899808	AT2TE42370	.	+	ATREP7	Helitron	RC	360	short	164	medium	6266025	chromoarm	237	no-CHH	no-CHH	.	.	.	.	.
Chr2	9901440	9902318	AT2TE42375	.	+	ATREP10D	Helitron	RC	878	short	1295	high	6268017	chromoarm	24	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	9901908	9902196	AT2TE42380	.	-	DT1	Mariner	DNA	288	short	123	medium	6268485	chromoarm	492	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	9906062	9906537	AT2TE42390	.	-	HELITRONY3	Helitron	RC	475	short	1399	high	6272639	chromoarm	238	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	9911417	9911575	AT2TE42410	.	-	VANDAL8	MuDR	DNA	158	short	123	medium	6277994	chromoarm	3032	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	9914608	9914698	AT2TE42420	.	+	ARNOLD2	MuDR	DNA	90	tiny	68	medium	6281185	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	9920726	9920839	AT2TE42450	.	+	HELITRONY1D	Helitron	RC	113	short	756	high	6287303	chromoarm	1813	no-CHH	no-CHH	.	.	.	.	.
Chr2	9920839	9921679	AT2TE42455	.	+	HELITRONY1B	Helitron	RC	840	short	414	high	6287416	chromoarm	1926	no-CHH	no-CHH	.	.	.	.	.
Chr2	9922600	9923495	AT2TE42460	.	-	TSCL	.	LINE?	895	short	81	medium	6289177	chromoarm	1502	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	9927586	9927684	AT2TE42480	.	-	ATCOPIA15	Copia	LTR	98	tiny	14	low	6294163	chromoarm	1068	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	9927684	9932560	AT2TE42485	.	-	ATCOPIA75	Copia	LTR	4876	medium	20	low	6294261	chromoarm	1166	no-CHH	no-CHH	ExpressedAndAnnotated	9930180	9927698	-	transcript_id-"ce25f732-7d13-4f54-b3e0-7b45134ba31f|7"
Chr2	9934174	9935115	AT2TE42490	.	-	ATREP4	Helitron	RC	941	short	832	high	6300751	chromoarm	3070	no-CHH	no-CHH	.	.	.	.	.
Chr2	9937182	9937966	AT2TE42500	.	+	ATREP15	Helitron	RC	784	short	1003	high	6303759	chromoarm	219	no-CHH	no-CHH	.	.	.	.	.
Chr2	9937966	9938055	AT2TE42505	.	+	HELITRONY1B	Helitron	RC	89	tiny	414	high	6304543	chromoarm	130	no-CHH	no-CHH	.	.	.	.	.
Chr2	9946394	9946514	AT2TE42540	.	-	DT1	Mariner	DNA	120	short	123	medium	6312971	chromoarm	353	no-CHH	no-CHH	.	.	.	.	.
Chr2	9946978	9947322	AT2TE42545	.	-	HELITRONY1D	Helitron	RC	344	short	756	high	6313555	chromoarm	937	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	9948040	9948713	AT2TE42550	.	-	ATREP4	Helitron	RC	673	short	832	high	6314617	chromoarm	706	no-CHH	no-CHH	.	.	.	.	.
Chr2	9963049	9963099	AT2TE42620	.	+	ATLINE1A	L1	LINE	50	tiny	289	high	6329626	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	9968578	9968848	AT2TE42650	.	-	ATREP10D	Helitron	RC	270	short	1295	high	6335155	chromoarm	837	no-CHH	no-CHH	.	.	.	.	.
Chr2	9968848	9969791	AT2TE42655	.	-	ATREP3	Helitron	RC	943	short	1439	high	6335425	chromoarm	1107	no-CHH	no-CHH	.	.	.	.	.
Chr2	9970675	9970779	AT2TE42660	.	+	ATREP5	Helitron	RC	104	short	624	high	6337252	chromoarm	1039	no-CHH	no-CHH	.	.	.	.	.
Chr2	9970779	9971495	AT2TE42665	.	+	ATREP15	Helitron	RC	716	short	1003	high	6337356	chromoarm	323	no-CHH	no-CHH	.	.	.	.	.
Chr2	9971495	9971612	AT2TE42670	.	-	ATREP5	Helitron	RC	117	short	624	high	6338072	chromoarm	206	no-CHH	no-CHH	.	.	.	.	.
Chr2	9975830	9976009	AT2TE42690	.	+	BRODYAGA1	MuDR	DNA	179	short	251	high	6342407	chromoarm	921	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	9979042	9979301	AT2TE42700	.	-	ATTIR16T3A	.	DNA	259	short	106	medium	6345619	chromoarm	180	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	9979302	9979326	AT2TE42705	.	-	HELITRONY3	Helitron	RC	24	tiny	1399	high	6345879	chromoarm	155	no-CHH	no-CHH	.	.	.	.	.
Chr2	9980721	9980751	AT2TE42710	.	-	ATREP15	Helitron	RC	30	tiny	1003	high	6347298	chromoarm	991	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	9980751	9981221	AT2TE42715	.	+	ATIS112A	Harbinger	DNA	470	short	173	medium	6347328	chromoarm	1021	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	9981566	9981933	AT2TE42720	.	-	ATREP10D	Helitron	RC	367	short	1295	high	6348143	chromoarm	1836	no-CHH	no-CHH	.	.	.	.	.
Chr2	9982031	9982482	AT2TE42725	.	+	ATLINE1_1	L1	LINE	451	short	61	medium	6348608	chromoarm	2301	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	9983252	9983460	AT2TE42730	.	+	ATLINE1_4	L1	LINE	208	short	102	medium	6349829	chromoarm	3522	no-CHH	no-CHH	.	.	.	.	.
Chr2	9993978	9994330	AT2TE42780	.	+	ATHILA7	Gypsy	LTR	352	short	134	medium	6360555	chromoarm	1368	no-CHH	no-CHH	.	.	.	.	.
Chr2	9995437	9995554	AT2TE42785	.	+	AT9TSD1	MuDR	DNA	117	short	55	medium	6362014	chromoarm	144	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	10001479	10009658	AT2TE42810	.	-	VANDAL21	MuDR	DNA	8179	long	64	medium	6368056	chromoarm	81	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	10001721,10001849,10005629,10005790,10007050,10009472,10009658	10004961,10002332,10004999,10004999,10006409,10006460,10009459	+,+,-,-,-,-,-	transcript_id-"696fb057-af3f-477f-aa6d-9827c9f8b40f|7",transcript_id-"fc98f017-83ca-4d81-b0e2-dea3b5db7c5c|8",transcript_id-"c4ade72c-36a7-4b2c-818f-b0c7a1ab1234|6",transcript_id-"0258d04b-1bbc-4c8c-aeb2-d524872b9028|145",transcript_id-"11f55df0-4352-4304-a5b1-1254514550b4|5",transcript_id-"b67efcf8-fa41-4bfa-b17e-b68a6b58072e|3",transcript_id-"9ab10859-f5de-4205-a243-158b545c41b4|3"
Chr2	10009936	10010457	AT2TE42815	.	-	ATREP4	Helitron	RC	521	short	832	high	6376513	chromoarm	1059	no-CHH	no-CHH	.	.	.	.	.
Chr2	10017682	10018059	AT2TE42850	.	-	ARNOLDY1	MuDR	DNA	377	short	237	high	6384259	chromoarm	739	no-CHH	no-CHH	.	.	.	.	.
Chr2	10018072	10020460	AT2TE42855	.	+	ATREP5	Helitron	RC	2388	medium	624	high	6384649	chromoarm	191	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	10018632	10018905	+	transcript_id-"07e23495-fda7-4fac-bffc-75f2c64a5780|3"
Chr2	10020460	10020570	AT2TE42860	.	+	ATREP5	Helitron	RC	110	short	624	high	6387037	chromoarm	81	no-RdDM	no-CHH	.	.	.	.	.
Chr2	10023039	10024103	AT2TE42870	.	+	ATREP15	Helitron	RC	1064	short	1003	high	6389616	chromoarm	235	no-CHH	no-CHH	.	.	.	.	.
Chr2	10023312	10023666	AT2TE42875	.	+	ATTIRX1A	.	DNA	354	short	63	medium	6389889	chromoarm	508	no-CHH	no-CHH	.	.	.	.	.
Chr2	10036181	10036438	AT2TE42930	.	-	ATREP15	Helitron	RC	257	short	1003	high	6402758	chromoarm	196	no-CHH	no-CHH	.	.	.	.	.
Chr2	10036438	10036533	AT2TE42935	.	+	HELITRONY3	Helitron	RC	95	tiny	1399	high	6403015	chromoarm	453	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	10036534	10040268	AT2TE42940	.	+	HELITRONY3	Helitron	RC	3734	medium	1399	high	6403111	chromoarm	549	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	10036636	10037298	AT2TE42945	.	-	HELITRONY3	Helitron	RC	662	short	1399	high	6403213	chromoarm	651	no-CHH	no-CHH	.	.	.	.	.
Chr2	10037298	10037353	AT2TE42950	.	+	HELITRONY3	Helitron	RC	55	tiny	1399	high	6403875	chromoarm	1313	no-CHH	no-CHH	.	.	.	.	.
Chr2	10037353	10037551	AT2TE42955	.	+	ATREP5	Helitron	RC	198	short	624	high	6403930	chromoarm	1368	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	10045353	10045588	AT2TE42990	.	+	ATTIRX1A	.	DNA	235	short	63	medium	6411930	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	10046935	10047251	AT2TE42995	.	+	ATLINE1A	L1	LINE	316	short	289	high	6413512	chromoarm	210	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	10049335	10049920	AT2TE43005	.	-	HELITRONY3	Helitron	RC	585	short	1399	high	6415912	chromoarm	87	no-CHH	no-CHH	.	.	.	.	.
Chr2	10049519	10049871	AT2TE43010	.	+	ATMUNX1	MuDR	DNA	352	short	155	medium	6416096	chromoarm	271	no-CHH	no-CHH	.	.	.	.	.
Chr2	10059135	10059230	AT2TE43060	.	-	VANDAL2	MuDR	DNA	95	tiny	43	low	6425712	chromoarm	93	no-CHH	no-CHH	.	.	.	.	.
Chr2	10061941	10063319	AT2TE43070	.	+	ATREP15	Helitron	RC	1378	short	1003	high	6428518	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	10065260	10065550	AT2TE43075	.	+	BRODYAGA2	MuDR	DNA	290	short	525	high	6431837	chromoarm	691	no-CHH	no-CHH	.	.	.	.	.
Chr2	10069580	10069634	AT2TE43090	.	-	HELITRONY1E	Helitron	RC	54	tiny	447	high	6436157	chromoarm	2416	no-CHH	no-CHH	.	.	.	.	.
Chr2	10069634	10070052	AT2TE43095	.	-	ATREP10D	Helitron	RC	418	short	1295	high	6436211	chromoarm	2244	no-CHH	no-CHH	.	.	.	.	.
Chr2	10070065	10071017	AT2TE43100	.	-	ATREP1	Helitron	RC	952	short	498	high	6436642	chromoarm	1279	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	10071017	10071326	AT2TE43105	.	-	ATREP10A	Helitron	RC	309	short	279	high	6437594	chromoarm	970	no-CHH	no-CHH	.	.	.	.	.
Chr2	10075302	10075335	AT2TE43120	.	-	ATHAT3	HAT	DNA	33	tiny	23	low	6441879	chromoarm	1288	no-CHH	no-CHH	.	.	.	.	.
Chr2	10075335	10076174	AT2TE43125	.	+	HELITRON1	Helitron	RC	839	short	130	medium	6441912	chromoarm	449	no-CHH	no-CHH	ExpressedAndAnnotated	10075999	10075523	-	transcript_id-"e9733148-a001-458b-b641-5c65cb30560b|5"
Chr2	10081862	10083344	AT2TE43150	.	+	ATREP3	Helitron	RC	1482	short	1439	high	6448439	chromoarm	2013	no-CHH	no-CHH	.	.	.	.	.
Chr2	10085477	10085508	AT2TE43160	.	-	VANDAL6	MuDR	DNA	31	tiny	89	medium	6452054	chromoarm	5628	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr2	10085508	10093594	AT2TE43165	.	-	VANDAL6	MuDR	DNA	8086	long	89	medium	6452085	chromoarm	4618	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	10085764,10088716,10089760,10093454	10088499,10088462,10088870,10090324	+,-,-,-	transcript_id-"fb861aad-f1d4-4b91-8967-26f60c6db266|29",transcript_id-"c4e8997f-865f-4d67-8b53-1b4481680b9f|9",transcript_id-"bf72db67-d2a4-433e-94c5-7d84d7ad9679|98",transcript_id-"bb0a1f40-f6cb-4f31-988c-4ae67d9a75d0|3"
Chr2	10095881	10095976	AT2TE43175	.	-	ATREP15	Helitron	RC	95	tiny	1003	high	6462458	chromoarm	2236	no-CHH	no-CHH	.	.	.	.	.
Chr2	10095976	10097015	AT2TE43180	.	+	ATREP10D	Helitron	RC	1039	short	1295	high	6462553	chromoarm	1197	no-CHH	no-CHH	.	.	.	.	.
Chr2	10097015	10097272	AT2TE43185	.	+	HELITRONY1D	Helitron	RC	257	short	756	high	6463592	chromoarm	940	no-CHH	no-CHH	.	.	.	.	.
Chr2	10108407	10109100	AT2TE43240	.	-	ATREP4	Helitron	RC	693	short	832	high	6474984	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	10113520	10113644	AT2TE43260	.	-	HELITRONY2	Helitron	RC	124	short	198	medium	6480097	chromoarm	784	no-CHH	no-CHH	.	.	.	.	.
Chr2	10113644	10114319	AT2TE43265	.	-	HELITRONY1E	Helitron	RC	675	short	447	high	6480221	chromoarm	908	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	10118851	10118879	AT2TE43280	.	+	HELITRONY1D	Helitron	RC	28	tiny	756	high	6485428	chromoarm	1362	no-CHH	no-CHH	.	.	.	.	.
Chr2	10118879	10119508	AT2TE43285	.	-	ATREP3	Helitron	RC	629	short	1439	high	6485456	chromoarm	733	no-CHH	no-CHH	.	.	.	.	.
Chr2	10121747	10122078	AT2TE43295	.	+	ATMU10	MuDR	DNA	331	short	87	medium	6488324	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	10124917	10125213	AT2TE43305	.	+	ATREP7	Helitron	RC	296	short	164	medium	6491494	chromoarm	478	no-CHH	no-CHH	.	.	.	.	.
Chr2	10137660	10137682	AT2TE43360	.	+	HELITRONY1D	Helitron	RC	22	tiny	756	high	6504237	chromoarm	308	no-CHH	RDR6-RdDM	.	.	.	.	.
Chr2	10137682	10137724	AT2TE43365	.	-	ATREP10D	Helitron	RC	42	tiny	1295	high	6504259	chromoarm	330	no-CHH	no-RdDM	.	.	.	.	.
Chr2	10137724	10139484	AT2TE43370	.	-	ATREP10D	Helitron	RC	1760	short	1295	high	6504301	chromoarm	372	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	10139484	10139530	AT2TE43375	.	+	ATREP4	Helitron	RC	46	tiny	832	high	6506061	chromoarm	1064	no-CHH	no-CHH	.	.	.	.	.
Chr2	10139530	10139608	AT2TE43380	.	+	HELITRONY1D	Helitron	RC	78	tiny	756	high	6506107	chromoarm	986	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	10139784	10140115	AT2TE43385	.	-	ATREP17	MuDR	DNA	331	short	34	low	6506361	chromoarm	479	no-CHH	no-CHH	.	.	.	.	.
Chr2	10140115	10140150	AT2TE43390	.	+	ATREP17	MuDR	DNA	35	tiny	34	low	6506692	chromoarm	444	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	10140613	10140849	AT2TE43395	.	+	ATENSPM1A	En-Spm	DNA	236	short	77	medium	6507190	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	10143160	10143321	AT2TE43405	.	-	ATGP10	Gypsy	LTR	161	short	165	medium	6509737	chromoarm	324	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	10144768	10145431	AT2TE43410	.	-	ATHATN2	HAT	DNA	663	short	46	low	6511345	chromoarm	257	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	10149900	10151666	AT2TE43430	.	+	ATREP3	Helitron	RC	1766	short	1439	high	6516477	chromoarm	850	no-CHH	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	10151666	10152427	AT2TE43435	.	+	TNAT2A	.	DNA	761	short	38	low	6518243	chromoarm	1554	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	10152427	10152684	AT2TE43440	.	-	HELITRONY3	Helitron	RC	257	short	1399	high	6519004	chromoarm	1297	no-CHH	no-CHH	.	.	.	.	.
Chr2	10155854	10156200	AT2TE43450	.	+	ATREP15	Helitron	RC	346	short	1003	high	6522431	chromoarm	254	no-RdDM	no-CHH	.	.	.	.	.
Chr2	10159202	10159764	AT2TE43460	.	-	HELITRONY1A	Helitron	RC	562	short	271	high	6525779	chromoarm	3602	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	10161541	10162768	AT2TE43465	.	+	ATREP3	Helitron	RC	1227	short	1439	high	6528118	chromoarm	5941	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	10162768	10162978	AT2TE43470	.	-	META1	Copia	LTR	210	short	138	medium	6529345	chromoarm	7168	no-CHH	no-CHH	.	.	.	.	.
Chr2	10162978	10163385	AT2TE43475	.	-	ATHPOGON1	Pogo	DNA	407	short	174	medium	6529555	chromoarm	7294	no-RdDM	no-CHH	.	.	.	.	.
Chr2	10167086	10169886	AT2TE43485	.	-	ATLINEIII	L1	LINE	2800	medium	196	medium	6533663	chromoarm	793	no-CHH	no-CHH	.	.	.	.	.
Chr2	10181537	10182045	AT2TE43540	.	-	HELITRONY1B	Helitron	RC	508	short	414	high	6548114	chromoarm	307	no-CHH	no-CHH	.	.	.	.	.
Chr2	10194705	10194957	AT2TE43600	.	-	RP1_AT	.	DNA	252	short	87	medium	6561282	chromoarm	1101	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	10198398	10198689	AT2TE43610	.	+	ATREP1	Helitron	RC	292	short	498	high	6564974	chromoarm	787	.	.	.	.	.	.	.
Chr2	10198689	10199558	AT2TE43615	.	-	HELITRONY1C	Helitron	RC	869	short	120	medium	6565266	chromoarm	139	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	10222085	10222912	AT2TE43720	.	+	HELITRONY3	Helitron	RC	827	short	1399	high	6588662	chromoarm	75	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	10223014	10223245	AT2TE43725	.	+	HELITRON2	Helitron	RC	231	short	194	medium	6589591	chromoarm	782	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	10223389	10223661	AT2TE43730	.	-	SIMPLEGUY1	Harbinger	DNA	272	short	116	medium	6589966	chromoarm	366	no-CHH	no-CHH	.	.	.	.	.
Chr2	10236746	10237296	AT2TE43800	.	-	ATHILA7	Gypsy	LTR	550	short	134	medium	6603323	chromoarm	307	no-CHH	no-CHH	.	.	.	.	.
Chr2	10238929	10239533	AT2TE43805	.	-	ATREP2A	Helitron	RC	605	short	116	medium	6605505	chromoarm	149	.	.	LowExpressed	.	.	.	.
Chr2	10240304	10240952	AT2TE43810	.	-	HELITRONY1B	Helitron	RC	648	short	414	high	6606881	chromoarm	1085	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	10243815	10244571	AT2TE43820	.	+	HELITRONY1B	Helitron	RC	756	short	414	high	6610392	chromoarm	349	no-CHH	no-CHH	.	.	.	.	.
Chr2	10254667	10255016	AT2TE43870	.	-	ATREP13	Helitron	RC	349	short	106	medium	6621244	chromoarm	137	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	10255017	10255512	AT2TE43875	.	+	ARNOLDY2	MuDR	DNA	496	short	288	high	6621593	chromoarm	486	.	.	.	.	.	.	.
Chr2	10255512	10256096	AT2TE43880	.	-	ATREP13	Helitron	RC	584	short	106	medium	6622089	chromoarm	982	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	10271788	10271889	AT2TE43960	.	-	ATENSPM10	En-Spm	DNA	101	short	81	medium	6638365	chromoarm	2417	PolIV-and-RDR6-RdDM	RDR6-RdDM	.	.	.	.	.
Chr2	10278665	10279408	AT2TE43990	.	-	ATHAT1	HAT	DNA	743	short	105	medium	6645242	chromoarm	1771	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	10289613	10289756	AT2TE44040	.	-	ATHATN3	HAT	DNA	143	short	70	medium	6656190	chromoarm	163	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr2	10290596	10291048	AT2TE44045	.	-	BRODYAGA1A	MuDR	DNA	452	short	586	high	6657173	chromoarm	369	no-CHH	no-CHH	.	.	.	.	.
Chr2	10292008	10292646	AT2TE44050	.	+	ATHAT2	HAT	DNA	638	short	19	low	6658585	chromoarm	246	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	10293215	10293622	AT2TE44055	.	+	ATHILA7	Gypsy	LTR	407	short	134	medium	6659792	chromoarm	707	no-CHH	no-CHH	.	.	.	.	.
Chr2	10305464	10305592	AT2TE44110	.	+	ATHPOGON1	Pogo	DNA	128	short	174	medium	6672041	chromoarm	924	no-CHH	no-CHH	.	.	.	.	.
Chr2	10306124	10306241	AT2TE44115	.	-	RathE1_cons	.	RathE1_cons	117	short	213	high	6672701	chromoarm	1584	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	10306311	10306621	AT2TE44120	.	-	HELITRONY1B	Helitron	RC	310	short	414	high	6672888	chromoarm	1771	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	10317959	10318041	AT2TE44180	.	+	ATREP3	Helitron	RC	82	tiny	1439	high	6684536	chromoarm	896	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	10322248	10322945	AT2TE44200	.	-	ATREP15	Helitron	RC	697	short	1003	high	6688825	chromoarm	71	no-CHH	no-CHH	.	.	.	.	.
Chr2	10322945	10323071	AT2TE44205	.	-	HELITRONY1D	Helitron	RC	126	short	756	high	6689522	chromoarm	768	no-CHH	no-CHH	.	.	.	.	.
Chr2	10324975	10325326	AT2TE44210	.	-	HELITRONY3	Helitron	RC	351	short	1399	high	6691552	chromoarm	1782	no-CHH	no-CHH	.	.	.	.	.
Chr2	10325326	10325773	AT2TE44215	.	-	ATTIR16T3A	.	DNA	447	short	106	medium	6691903	chromoarm	1335	no-CHH	no-CHH	.	.	.	.	.
Chr2	10325773	10326236	AT2TE44220	.	-	HELITRONY1B	Helitron	RC	463	short	414	high	6692350	chromoarm	872	no-CHH	no-CHH	.	.	.	.	.
Chr2	10330560	10330980	AT2TE44240	.	+	VANDAL17	MuDR	DNA	420	short	178	medium	6697137	chromoarm	959	no-CHH	no-CHH	.	.	.	.	.
Chr2	10338005	10338175	AT2TE44280	.	-	BRODYAGA1A	MuDR	DNA	170	short	586	high	6704582	chromoarm	310	no-CHH	no-CHH	.	.	.	.	.
Chr2	10351315	10351572	AT2TE44350	.	+	ATMUNX1	MuDR	DNA	258	short	155	medium	6717891	chromoarm	1748	.	.	.	.	.	.	.
Chr2	10351572	10352460	AT2TE44355	.	+	ATREP10	Helitron	RC	888	short	63	medium	6718149	chromoarm	2006	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	10352474	10352539	AT2TE44360	.	-	ATMUNX1	MuDR	DNA	65	tiny	155	medium	6719051	chromoarm	2890	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	10354208	10354627	AT2TE44365	.	-	HELITRON4	Helitron	RC	419	short	199	medium	6720785	chromoarm	802	no-RdDM	no-RdDM	ExpressedAndAnnotated	10353298	10354408	+	transcript_id-"863f99b9-c863-4703-b828-4e36c1468ebf|4"
Chr2	10355551	10355667	AT2TE44370	.	-	RathE1_cons	.	RathE1_cons	116	short	213	high	6722128	chromoarm	0	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr2	10359807	10359902	AT2TE44390	.	-	ATREP8	Helitron	RC	95	tiny	75	medium	6726384	chromoarm	261	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	10359945	10360203	AT2TE44395	.	-	ATENSPM7	En-Spm	DNA	258	short	74	medium	6726522	chromoarm	399	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	10360203	10360344	AT2TE44400	.	-	ATREP8	Helitron	RC	141	short	75	medium	6726780	chromoarm	657	no-CHH	no-CHH	.	.	.	.	.
Chr2	10367214	10368137	AT2TE44430	.	+	ATREP10D	Helitron	RC	923	short	1295	high	6733791	chromoarm	1139	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	10368954	10369177	AT2TE44435	.	-	HELITRON2	Helitron	RC	224	short	194	medium	6735530	chromoarm	801	.	.	.	.	.	.	.
Chr2	10379392	10379861	AT2TE44480	.	+	ATLINE1_4	L1	LINE	469	short	102	medium	6745969	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	10384880	10385173	AT2TE44510	.	+	ATLINEIII	L1	LINE	293	short	196	medium	6751457	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	10406355	10407468	AT2TE44620	.	-	ATREP10B	Helitron	RC	1113	short	491	high	6772932	chromoarm	808	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	10419749	10420731	AT2TE44680	.	-	ATREP10D	Helitron	RC	982	short	1295	high	6786326	chromoarm	19	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	10420731	10421702	AT2TE44685	.	-	ATREP4	Helitron	RC	971	short	832	high	6787308	chromoarm	894	no-CHH	no-CHH	.	.	.	.	.
Chr2	10428161	10428247	AT2TE44710	.	+	ATCOPIA24	Copia	LTR	86	tiny	27	low	6794738	chromoarm	0	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	10429535	10430405	AT2TE44715	.	+	ATREP4	Helitron	RC	870	short	832	high	6796112	chromoarm	484	no-CHH	no-CHH	.	.	.	.	.
Chr2	10433542	10433807	AT2TE44725	.	-	HELITRON2	Helitron	RC	265	short	194	medium	6800119	chromoarm	609	no-CHH	no-CHH	.	.	.	.	.
Chr2	10433807	10434595	AT2TE44730	.	+	ATREP4	Helitron	RC	788	short	832	high	6800384	chromoarm	874	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	10435045	10435189	AT2TE44735	.	+	RathE3_cons	.	RathE3_cons	144	short	104	medium	6801622	chromoarm	2112	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	10435230	10435488	AT2TE44740	.	-	TNAT1A	.	DNA	258	short	162	medium	6801807	chromoarm	2187	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	10436217	10436265	AT2TE44745	.	-	ATMU6N1	MuDR	DNA	48	tiny	39	low	6802794	chromoarm	1410	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	10436265	10437353	AT2TE44750	.	-	BOMZH1	MuDR	DNA	1088	short	28	low	6802842	chromoarm	322	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	10439769	10439872	AT2TE44760	.	-	RathE1_cons	.	RathE1_cons	103	short	213	high	6806346	chromoarm	547	no-CHH	no-CHH	.	.	.	.	.
Chr2	10441331	10441387	AT2TE44765	.	+	HELITRONY3	Helitron	RC	56	tiny	1399	high	6807908	chromoarm	2109	no-CHH	no-CHH	.	.	.	.	.
Chr2	10441387	10443044	AT2TE44770	.	-	ATREP3	Helitron	RC	1657	short	1439	high	6807964	chromoarm	1883	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	10455213	10455314	AT2TE44830	.	-	ATCOPIA77	Copia	LTR	101	short	6	low	6821790	chromoarm	799	no-CHH	no-CHH	.	.	.	.	.
Chr2	10461188	10461319	AT2TE44860	.	-	ARNOLDY2	MuDR	DNA	131	short	288	high	6827765	chromoarm	0	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	10461319	10461361	AT2TE44865	.	-	ARNOLDY2	MuDR	DNA	42	tiny	288	high	6827896	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	10461361	10462593	AT2TE44870	.	+	ARNOLDY2	MuDR	DNA	1232	short	288	high	6827938	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	10465229	10465318	AT2TE44880	.	+	HELITRONY1D	Helitron	RC	89	tiny	756	high	6831806	chromoarm	1680	no-CHH	no-CHH	.	.	.	.	.
Chr2	10465319	10465689	AT2TE44885	.	+	ATREP4	Helitron	RC	371	short	832	high	6831895	chromoarm	1769	.	.	.	.	.	.	.
Chr2	10465713	10465780	AT2TE44890	.	+	ATREP10A	Helitron	RC	67	tiny	279	high	6832290	chromoarm	2164	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	10465780	10466226	AT2TE44895	.	+	HELITRONY1A	Helitron	RC	446	short	271	high	6832357	chromoarm	2113	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	10466226	10467597	AT2TE44900	.	+	ATREP15	Helitron	RC	1371	short	1003	high	6832803	chromoarm	742	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	10467597	10467648	AT2TE44905	.	-	ATREP4	Helitron	RC	51	tiny	832	high	6834174	chromoarm	691	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	10467648	10468258	AT2TE44910	.	+	ATHATN7	HAT	DNA	610	short	71	medium	6834225	chromoarm	81	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	10468259	10469079	AT2TE44915	.	-	ATREP3	Helitron	RC	821	short	1439	high	6834835	chromoarm	0	.	.	.	.	.	.	.
Chr2	10469080	10469136	AT2TE44920	.	+	ATREP15	Helitron	RC	56	tiny	1003	high	6835657	chromoarm	0	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	10469136	10470100	AT2TE44925	.	-	ATREP3	Helitron	RC	964	short	1439	high	6835713	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	10470388	10471317	AT2TE44930	.	+	ATREP10B	Helitron	RC	929	short	491	high	6836965	chromoarm	240	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	10470834	10471295	AT2TE44935	.	-	ATHPOGON1	Pogo	DNA	461	short	174	medium	6837411	chromoarm	262	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	10471317	10471437	AT2TE44940	.	+	ATREP6	Helitron	RC	120	short	181	medium	6837894	chromoarm	120	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	10479581	10480520	AT2TE44980	.	+	ATREP10D	Helitron	RC	939	short	1295	high	6846158	chromoarm	207	no-CHH	no-CHH	.	.	.	.	.
Chr2	10488228	10491804	AT2TE45020	.	-	ATCOPIA12	Copia	LTR	3576	medium	15	low	6854805	chromoarm	657	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	10491804	10491932	AT2TE45025	.	-	ATCOPIA13	Copia	LTR	128	short	35	low	6858381	chromoarm	879	no-CHH	no-CHH	.	.	.	.	.
Chr2	10492274	10492619	AT2TE45030	.	-	ATHATN5	HAT	DNA	345	short	42	low	6858851	chromoarm	192	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	10496213	10496367	AT2TE45040	.	-	ATIS112A	Harbinger	DNA	154	short	173	medium	6862790	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	10503517	10503626	AT2TE45080	.	+	ATTIRX1B	.	DNA	109	short	44	low	6870094	chromoarm	138	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	10505728	10506633	AT2TE45090	.	-	ATREP19	.	DNA	905	short	189	medium	6872305	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	10507113	10508711	AT2TE45095	.	-	ATHATN3A	HAT	DNA	1598	short	20	low	6873690	chromoarm	356	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	10507248	10507372	AT2TE45100	.	-	ATHATN3A	HAT	DNA	124	short	20	low	6873825	chromoarm	498	no-CHH	no-CHH	.	.	.	.	.
Chr2	10507372	10508559	AT2TE45105	.	+	SIMPLEHAT1	HAT	DNA	1187	short	56	medium	6873949	chromoarm	508	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	10511371	10511858	AT2TE45115	.	-	ATREP3	Helitron	RC	487	short	1439	high	6877948	chromoarm	469	no-CHH	no-CHH	.	.	.	.	.
Chr2	10511858	10513086	AT2TE45120	.	+	ATREP10D	Helitron	RC	1228	short	1295	high	6878435	chromoarm	0	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	10516514	10516590	AT2TE45130	.	+	VANDAL2N1	MuDR	DNA	76	tiny	51	medium	6883091	chromoarm	289	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	10519750	10520168	AT2TE45140	.	+	BRODYAGA1A	MuDR	DNA	418	short	586	high	6886327	chromoarm	0	no-CHH	no-RdDM	.	.	.	.	.
Chr2	10521475	10521639	AT2TE45145	.	+	ATLINE1_5	L1	LINE	165	short	91	medium	6888051	chromoarm	925	.	.	.	.	.	.	.
Chr2	10521661	10521798	AT2TE45150	.	+	ATMUNX1	MuDR	DNA	137	short	155	medium	6888238	chromoarm	984	no-CHH	no-CHH	.	.	.	.	.
Chr2	10527335	10527879	AT2TE45180	.	-	BRODYAGA1A	MuDR	DNA	544	short	586	high	6893912	chromoarm	1495	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	10532571	10533462	AT2TE45200	.	+	ATREP5	Helitron	RC	891	short	624	high	6899148	chromoarm	614	no-CHH	no-RdDM	LowExpressed	.	.	.	.
Chr2	10534132	10534615	AT2TE45205	.	+	BRODYAGA1	MuDR	DNA	483	short	251	high	6900709	chromoarm	2175	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	10534898	10535902	AT2TE45210	.	-	SIMPLEGUY1	Harbinger	DNA	1004	short	116	medium	6901475	chromoarm	2941	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	10535902	10536072	AT2TE45215	.	-	BRODYAGA2	MuDR	DNA	170	short	525	high	6902479	chromoarm	3945	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	10540101	10540177	AT2TE45230	.	+	HELITRONY3	Helitron	RC	76	tiny	1399	high	6906678	chromoarm	8144	no-CHH	no-CHH	.	.	.	.	.
Chr2	10540177	10540653	AT2TE45235	.	+	HELITRONY1D	Helitron	RC	476	short	756	high	6906754	chromoarm	8220	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	10540653	10540933	AT2TE45240	.	+	ATHATN5	HAT	DNA	280	short	42	low	6907230	chromoarm	8696	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	10541021	10541092	AT2TE45245	.	-	BRODYAGA1	MuDR	DNA	71	tiny	251	high	6907598	chromoarm	9064	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	10541092	10541839	AT2TE45250	.	-	BRODYAGA2	MuDR	DNA	747	short	525	high	6907669	chromoarm	9135	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	10546131	10546286	AT2TE45270	.	+	HELITRONY3	Helitron	RC	155	short	1399	high	6912708	chromoarm	13192	no-CHH	DCL3-RdDM	.	.	.	.	.
Chr2	10546286	10546953	AT2TE45275	.	-	ATREP9	Helitron	RC	667	short	201	high	6912863	chromoarm	12525	no-CHH	DCL3-RdDM	.	.	.	.	.
Chr2	10547025	10549520	AT2TE45280	.	+	Unassigned	.	Unassigned	2495	medium	.	low	6913602	chromoarm	9958	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	10552159	10552291	AT2TE45290	.	+	ATDNA12T3_2	.	DNA	132	short	660	high	6918736	chromoarm	7187	no-CHH	no-CHH	.	.	.	.	.
Chr2	10553956	10554327	AT2TE45295	.	+	HELITRON2	Helitron	RC	371	short	194	medium	6920533	chromoarm	5151	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	10555934	10555958	AT2TE45300	.	+	ATHILA7	Gypsy	LTR	24	tiny	134	medium	6922511	chromoarm	3520	no-CHH	no-CHH	.	.	.	.	.
Chr2	10555958	10556051	AT2TE45305	.	-	HELITRONY1D	Helitron	RC	93	tiny	756	high	6922535	chromoarm	3427	no-CHH	no-CHH	.	.	.	.	.
Chr2	10557268	10557818	AT2TE45310	.	-	HELITRON2	Helitron	RC	550	short	194	medium	6923845	chromoarm	1660	no-CHH	no-CHH	.	.	.	.	.
Chr2	10557818	10558547	AT2TE45315	.	-	HELITRONY1A	Helitron	RC	729	short	271	high	6924395	chromoarm	931	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	10561998	10562140	AT2TE45325	.	+	RathE3_cons	.	RathE3_cons	142	short	104	medium	6928575	chromoarm	681	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	10573333	10573794	AT2TE45380	.	+	HELITRON4	Helitron	RC	461	short	199	medium	6939910	chromoarm	67	no-CHH	no-CHH	.	.	.	.	.
Chr2	10579374	10579982	AT2TE45410	.	+	ATHATN2	HAT	DNA	608	short	46	low	6945951	chromoarm	152	PolIV-RdDM	RDR6-RdDM	.	.	.	.	.
Chr2	10582287	10582517	AT2TE45420	.	+	ATCOPIA78	Copia	LTR	230	short	24	low	6948864	chromoarm	411	no-CHH	no-CHH	.	.	.	.	.
Chr2	10589791	10590394	AT2TE45460	.	-	AT9TSD1	MuDR	DNA	603	short	55	medium	6956368	chromoarm	159	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	10592184	10609120	AT2TE45465	.	+	VANDAL3	MuDR	DNA	16936	long	177	medium	6958761	chromoarm	326	no-RdDM	no-RdDM	ExpressedAndAnnotated	10601851	10602531	+	transcript_id-"9b0f2082-b25c-40af-8932-964fe6d3639b|4"
Chr2	10612600	10613628	AT2TE45475	.	+	ATREP15	Helitron	RC	1028	short	1003	high	6979177	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	10616627	10617053	AT2TE45485	.	+	HELITRON4	Helitron	RC	426	short	199	medium	6983204	chromoarm	209	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	10621398	10621429	AT2TE45500	.	+	BRODYAGA1A	MuDR	DNA	31	tiny	586	high	6987975	chromoarm	148	no-CHH	no-CHH	.	.	.	.	.
Chr2	10621430	10621489	AT2TE45505	.	+	BRODYAGA1A	MuDR	DNA	60	tiny	586	high	6988006	chromoarm	179	.	.	.	.	.	.	.
Chr2	10621489	10621919	AT2TE45510	.	-	BRODYAGA1A	MuDR	DNA	430	short	586	high	6988066	chromoarm	239	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	10621919	10621973	AT2TE45515	.	-	BRODYAGA1	MuDR	DNA	54	tiny	251	high	6988496	chromoarm	479	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	10623572	10623924	AT2TE45520	.	+	ATHILA6A	Gypsy	LTR	352	short	247	high	6990149	chromoarm	0	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	10628093	10628298	AT2TE45540	.	-	VANDAL8	MuDR	DNA	205	short	123	medium	6994670	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	10629089	10629428	AT2TE45545	.	-	ATREP5	Helitron	RC	339	short	624	high	6995666	chromoarm	383	no-CHH	no-CHH	.	.	.	.	.
Chr2	10629428	10629638	AT2TE45550	.	+	HELITRONY3	Helitron	RC	210	short	1399	high	6996005	chromoarm	173	no-CHH	no-CHH	.	.	.	.	.
Chr2	10629638	10629693	AT2TE45555	.	-	ARNOLDY1	MuDR	DNA	55	tiny	237	high	6996215	chromoarm	118	no-CHH	no-CHH	.	.	.	.	.
Chr2	10637206	10637342	AT2TE45590	.	-	HELITRONY1D	Helitron	RC	136	short	756	high	7003783	chromoarm	3659	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	10637342	10637421	AT2TE45595	.	-	HELITRONY1B	Helitron	RC	79	tiny	414	high	7003919	chromoarm	3795	no-CHH	no-CHH	.	.	.	.	.
Chr2	10637421	10637467	AT2TE45600	.	-	ATREP3	Helitron	RC	46	tiny	1439	high	7003998	chromoarm	3874	no-RdDM	no-CHH	.	.	.	.	.
Chr2	10637467	10639040	AT2TE45605	.	+	ATREP4	Helitron	RC	1573	short	832	high	7004044	chromoarm	3920	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	10640023	10640086	AT2TE45610	.	+	ATREP10D	Helitron	RC	63	tiny	1295	high	7006600	chromoarm	6476	no-CHH	no-CHH	.	.	.	.	.
Chr2	10640086	10640559	AT2TE45615	.	-	ATREP10B	Helitron	RC	473	short	491	high	7006663	chromoarm	6539	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	10640561	10640599	AT2TE45620	.	-	ATDNA2T9C	MuDR	DNA	38	tiny	242	high	7007138	chromoarm	7014	no-RdDM	no-CHH	.	.	.	.	.
Chr2	10643916	10644005	AT2TE45630	.	-	ATREP4	Helitron	RC	89	tiny	832	high	7010493	chromoarm	10102	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	10644005	10644601	AT2TE45635	.	-	ATREP11	Helitron	RC	596	short	841	high	7010582	chromoarm	9506	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	10644601	10646056	AT2TE45640	.	-	ATREP10D	Helitron	RC	1455	short	1295	high	7011178	chromoarm	8051	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	10646602	10646644	AT2TE45645	.	+	ATREP11	Helitron	RC	42	tiny	841	high	7013179	chromoarm	7463	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	10646644	10648422	AT2TE45650	.	-	ATREP3	Helitron	RC	1778	short	1439	high	7013221	chromoarm	5685	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	10649229	10649459	AT2TE45655	.	+	ATHATN8	HAT	DNA	230	short	15	low	7015806	chromoarm	4648	no-RdDM	no-CHH	.	.	.	.	.
Chr2	10652019	10653199	AT2TE45665	.	-	META1	Copia	LTR	1180	short	138	medium	7018596	chromoarm	908	no-CHH	no-CHH	.	.	.	.	.
Chr2	10660780	10661307	AT2TE45700	.	-	ATREP9	Helitron	RC	527	short	201	high	7027357	chromoarm	554	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	10667245	10668021	AT2TE45730	.	+	ATREP15	Helitron	RC	776	short	1003	high	7033822	chromoarm	112	no-CHH	no-CHH	.	.	.	.	.
Chr2	10677490	10678139	AT2TE45780	.	+	ATREP10D	Helitron	RC	649	short	1295	high	7044067	chromoarm	1627	no-CHH	no-RdDM	.	.	.	.	.
Chr2	10678456	10679017	AT2TE45785	.	+	ATREP10B	Helitron	RC	561	short	491	high	7045033	chromoarm	749	no-CHH	no-CHH	.	.	.	.	.
Chr2	10682021	10682597	AT2TE45795	.	+	ATREP10A	Helitron	RC	576	short	279	high	7048598	chromoarm	367	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	10682597	10683546	AT2TE45800	.	+	ATREP10B	Helitron	RC	949	short	491	high	7049174	chromoarm	881	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	10683546	10683868	AT2TE45805	.	+	ATREP10B	Helitron	RC	322	short	491	high	7050123	chromoarm	559	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	10683868	10683999	AT2TE45810	.	+	ATREP4	Helitron	RC	131	short	832	high	7050445	chromoarm	428	no-CHH	no-CHH	.	.	.	.	.
Chr2	10689926	10689966	AT2TE45840	.	-	VANDAL8	MuDR	DNA	40	tiny	123	medium	7056503	chromoarm	0	no-CHH	no-RdDM	.	.	.	.	.
Chr2	10689966	10690215	AT2TE45845	.	-	VANDAL8	MuDR	DNA	249	short	123	medium	7056543	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	10704363	10705554	AT2TE45910	.	+	ATREP10D	Helitron	RC	1191	short	1295	high	7070940	chromoarm	97	no-CHH	no-CHH	.	.	.	.	.
Chr2	10705554	10705967	AT2TE45915	.	-	HELITRONY1E	Helitron	RC	413	short	447	high	7072131	chromoarm	1288	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	10706130	10706371	AT2TE45920	.	+	ATLINE1_6	L1	LINE	241	short	129	medium	7072707	chromoarm	1864	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	10707221	10709131	AT2TE45925	.	-	ATREP10D	Helitron	RC	1910	short	1295	high	7073798	chromoarm	104	no-CHH	no-CHH	.	.	.	.	.
Chr2	10709675	10709839	AT2TE45930	.	-	RathE1_cons	.	RathE1_cons	164	short	213	high	7076252	chromoarm	0	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	10730896	10730988	AT2TE46040	.	+	RathE1_cons	.	RathE1_cons	92	tiny	213	high	7097473	chromoarm	633	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	10733332	10733356	AT2TE46050	.	-	ATREP4	Helitron	RC	24	tiny	832	high	7099909	chromoarm	830	no-CHH	no-CHH	.	.	.	.	.
Chr2	10733356	10733932	AT2TE46055	.	+	ATREP9	Helitron	RC	576	short	201	high	7099933	chromoarm	254	no-CHH	no-CHH	.	.	.	.	.
Chr2	10738305	10738468	AT2TE46070	.	-	RathE1_cons	.	RathE1_cons	163	short	213	high	7104882	chromoarm	661	no-CHH	no-CHH	.	.	.	.	.
Chr2	10746008	10746102	AT2TE46110	.	-	TNAT1A	.	DNA	94	tiny	162	medium	7112585	chromoarm	468	no-CHH	no-CHH	.	.	.	.	.
Chr2	10746227	10746287	AT2TE46115	.	+	TNAT1A	.	DNA	60	tiny	162	medium	7112804	chromoarm	687	no-CHH	no-CHH	.	.	.	.	.
Chr2	10748727	10749222	AT2TE46125	.	-	HELITRONY1E	Helitron	RC	495	short	447	high	7115304	chromoarm	260	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	10749222	10750409	AT2TE46130	.	-	HELITRONY3	Helitron	RC	1187	short	1399	high	7115799	chromoarm	755	no-CHH	no-CHH	.	.	.	.	.
Chr2	10750409	10750464	AT2TE46135	.	+	HELITRONY1E	Helitron	RC	55	tiny	447	high	7116986	chromoarm	1407	no-CHH	no-CHH	.	.	.	.	.
Chr2	10751134	10751484	AT2TE46140	.	-	ATCOPIA63	Copia	LTR	350	short	11	low	7117711	chromoarm	387	no-CHH	no-CHH	.	.	.	.	.
Chr2	10755243	10755330	AT2TE46150	.	-	ATREP10C	Helitron	RC	87	tiny	123	medium	7121820	chromoarm	286	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	10758806	10758839	AT2TE46160	.	-	HELITRONY1B	Helitron	RC	33	tiny	414	high	7125383	chromoarm	939	no-RdDM	no-CHH	.	.	.	.	.
Chr2	10758839	10759544	AT2TE46165	.	-	ATREP5	Helitron	RC	705	short	624	high	7125416	chromoarm	234	no-CHH	no-CHH	.	.	.	.	.
Chr2	10759781	10759938	AT2TE46170	.	+	ATENSPM1A	En-Spm	DNA	157	short	77	medium	7126358	chromoarm	0	no-CHH	no-CHH	ExpressedAndAnnotated	10759719	10762471	+	transcript_id-"7cea9891-0130-4ae4-becc-d593ed4941d0|3"
Chr2	10760670	10761705	AT2TE46175	.	+	ATHAT1	HAT	DNA	1035	short	105	medium	7127247	chromoarm	0	no-CHH	no-RdDM	ExpressedAndAnnotated	10759719	10762471	+	transcript_id-"7cea9891-0130-4ae4-becc-d593ed4941d0|3"
Chr2	10768706	10768991	AT2TE46210	.	-	HELITRONY1B	Helitron	RC	285	short	414	high	7135283	chromoarm	189	no-CHH	no-CHH	.	.	.	.	.
Chr2	10768991	10769093	AT2TE46215	.	-	HELITRONY1D	Helitron	RC	102	short	756	high	7135568	chromoarm	474	no-CHH	no-CHH	.	.	.	.	.
Chr2	10769093	10770246	AT2TE46220	.	+	ATREP10D	Helitron	RC	1153	short	1295	high	7135670	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	10775219	10775358	AT2TE46250	.	+	ATMUNX1	MuDR	DNA	139	short	155	medium	7141796	chromoarm	243	no-CHH	no-CHH	.	.	.	.	.
Chr2	10776681	10776772	AT2TE46255	.	+	ATHAT1	HAT	DNA	91	tiny	105	medium	7143258	chromoarm	663	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	10779526	10779705	AT2TE46265	.	+	ATREP17	MuDR	DNA	179	short	34	low	7146103	chromoarm	368	no-CHH	no-CHH	.	.	.	.	.
Chr2	10780406	10780918	AT2TE46270	.	+	HELITRON4	Helitron	RC	512	short	199	medium	7146983	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	10780918	10780988	AT2TE46275	.	+	HELITRONY1A	Helitron	RC	70	tiny	271	high	7147495	chromoarm	509	no-CHH	no-CHH	.	.	.	.	.
Chr2	10796438	10796465	AT2TE46350	.	-	ATREP3	Helitron	RC	27	tiny	1439	high	7163015	chromoarm	399	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr2	10796471	10796546	AT2TE46355	.	-	BRODYAGA1A	MuDR	DNA	75	tiny	586	high	7163048	chromoarm	432	no-CHH	no-CHH	.	.	.	.	.
Chr2	10796546	10797354	AT2TE46360	.	+	ATHPOGON3	Pogo	DNA	808	short	118	medium	7163123	chromoarm	244	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	10797354	10797483	AT2TE46365	.	-	ATREP3	Helitron	RC	129	short	1439	high	7163931	chromoarm	115	no-CHH	no-CHH	.	.	.	.	.
Chr2	10806144	10806429	AT2TE46400	.	-	TNAT1A	.	DNA	285	short	162	medium	7172721	chromoarm	270	no-CHH	no-CHH	.	.	.	.	.
Chr2	10806935	10807318	AT2TE46405	.	+	BRODYAGA1A	MuDR	DNA	383	short	586	high	7173512	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	10807318	10807349	AT2TE46410	.	-	ATREP9	Helitron	RC	31	tiny	201	high	7173895	chromoarm	0	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	10813481	10813572	AT2TE46440	.	-	SIMPLEGUY1	Harbinger	DNA	91	tiny	116	medium	7180058	chromoarm	897	no-CHH	no-CHH	.	.	.	.	.
Chr2	10814241	10814347	AT2TE46445	.	-	ATCOPIA11	Copia	LTR	107	short	26	low	7180817	chromoarm	122	.	.	.	.	.	.	.
Chr2	10816023	10816755	AT2TE46450	.	+	HELITRONY1B	Helitron	RC	732	short	414	high	7182600	chromoarm	50	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	10821614	10822210	AT2TE46470	.	-	HELITRONY1A	Helitron	RC	596	short	271	high	7188191	chromoarm	505	no-CHH	no-CHH	.	.	.	.	.
Chr2	10825414	10825487	AT2TE46480	.	+	ATHATN2	HAT	DNA	73	tiny	46	low	7191991	chromoarm	737	no-CHH	no-CHH	.	.	.	.	.
Chr2	10825487	10825758	AT2TE46485	.	+	BRODYAGA1A	MuDR	DNA	271	short	586	high	7192064	chromoarm	810	no-CHH	no-CHH	.	.	.	.	.
Chr2	10825758	10825887	AT2TE46490	.	-	TAG3N1	HAT	DNA	129	short	97	medium	7192335	chromoarm	847	no-CHH	no-CHH	.	.	.	.	.
Chr2	10842006	10842130	AT2TE46570	.	+	ARNOLDY2	MuDR	DNA	124	short	288	high	7208583	chromoarm	125	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	10842130	10842797	AT2TE46575	.	-	ATREP10A	Helitron	RC	667	short	279	high	7208707	chromoarm	249	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	10843817	10843893	AT2TE46580	.	-	HARBINGER	Harbinger	DNA	76	tiny	90	medium	7210394	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	10846328	10846694	AT2TE46590	.	+	ATREP5	Helitron	RC	366	short	624	high	7212905	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	10872786	10872824	AT2TE46720	.	-	HELITRONY2	Helitron	RC	38	tiny	198	medium	7239363	chromoarm	709	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	10872824	10873584	AT2TE46725	.	-	HELITRON2	Helitron	RC	760	short	194	medium	7239401	chromoarm	747	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	10873584	10873914	AT2TE46730	.	-	HELITRON2	Helitron	RC	330	short	194	medium	7240161	chromoarm	1507	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	10873914	10874039	AT2TE46735	.	+	ARNOLDY2	MuDR	DNA	125	short	288	high	7240491	chromoarm	1837	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	10874039	10874573	AT2TE46740	.	+	ATTIR16T3A	.	DNA	534	short	106	medium	7240616	chromoarm	1962	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	10874573	10874625	AT2TE46745	.	+	HELITRONY3	Helitron	RC	52	tiny	1399	high	7241150	chromoarm	2496	no-CHH	no-CHH	.	.	.	.	.
Chr2	10877430	10878744	AT2TE46755	.	+	ATLINE1_4	L1	LINE	1314	short	102	medium	7244007	chromoarm	3045	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	10878744	10878864	AT2TE46760	.	+	TA11	L1	LINE	120	short	157	medium	7245321	chromoarm	2925	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	10879870	10880247	AT2TE46765	.	+	HELITRONY1C	Helitron	RC	377	short	120	medium	7246447	chromoarm	1542	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	10905406	10906060	AT2TE46890	.	+	ATREP11	Helitron	RC	654	short	841	high	7271983	chromoarm	428	no-CHH	no-CHH	.	.	.	.	.
Chr2	10931031	10931246	AT2TE47020	.	+	ARNOLDY1	MuDR	DNA	215	short	237	high	7297608	chromoarm	412	no-CHH	no-CHH	.	.	.	.	.
Chr2	10931246	10932314	AT2TE47025	.	-	ARNOLDY2	MuDR	DNA	1068	short	288	high	7297823	chromoarm	627	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	10932320	10932561	AT2TE47030	.	+	HELITRONY3	Helitron	RC	241	short	1399	high	7298897	chromoarm	605	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	10932561	10932610	AT2TE47035	.	+	ARNOLDY1	MuDR	DNA	49	tiny	237	high	7299138	chromoarm	556	no-CHH	no-CHH	.	.	.	.	.
Chr2	10933850	10934011	AT2TE47040	.	+	ATCOPIA5	Copia	LTR	161	short	16	low	7300427	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	10934639	10934715	AT2TE47045	.	-	ATREP9	Helitron	RC	76	tiny	201	high	7301216	chromoarm	102	no-CHH	no-CHH	.	.	.	.	.
Chr2	10934715	10935287	AT2TE47050	.	+	ATREP11	Helitron	RC	572	short	841	high	7301292	chromoarm	178	no-CHH	no-CHH	.	.	.	.	.
Chr2	10935870	10936102	AT2TE47055	.	-	ATMUNX1	MuDR	DNA	232	short	155	medium	7302447	chromoarm	1333	no-CHH	no-CHH	.	.	.	.	.
Chr2	10937856	10937955	AT2TE47060	.	-	ATREP10D	Helitron	RC	99	tiny	1295	high	7304433	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	10937955	10937983	AT2TE47065	.	+	HELITRONY1E	Helitron	RC	28	tiny	447	high	7304532	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	10937983	10938911	AT2TE47070	.	+	BRODYAGA2	MuDR	DNA	928	short	525	high	7304560	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	10938911	10939059	AT2TE47075	.	+	ATREP6	Helitron	RC	148	short	181	medium	7305488	chromoarm	830	no-CHH	no-CHH	.	.	.	.	.
Chr2	10945431	10945641	AT2TE47100	.	-	HELITRONY3	Helitron	RC	210	short	1399	high	7312008	chromoarm	1454	no-CHH	no-CHH	.	.	.	.	.
Chr2	10945641	10945992	AT2TE47105	.	+	ATREP11	Helitron	RC	351	short	841	high	7312218	chromoarm	1103	no-CHH	no-CHH	.	.	.	.	.
Chr2	10950127	10950211	AT2TE47120	.	-	ATREP7	Helitron	RC	84	tiny	164	medium	7316704	chromoarm	576	no-CHH	no-CHH	.	.	.	.	.
Chr2	10950228	10950316	AT2TE47125	.	-	HARBINGER	Harbinger	DNA	88	tiny	90	medium	7316805	chromoarm	677	no-CHH	no-CHH	.	.	.	.	.
Chr2	10950316	10952384	AT2TE47130	.	+	HARBINGER	Harbinger	DNA	2068	medium	90	medium	7316893	chromoarm	334	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	10951682	10952057	AT2TE47135	.	+	ATTIRX1A	.	DNA	375	short	63	medium	7318259	chromoarm	661	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	10952057	10952109	AT2TE47140	.	+	ATTIRX1B	.	DNA	52	tiny	44	low	7318634	chromoarm	609	no-CHH	no-CHH	.	.	.	.	.
Chr2	10995955	10996015	AT2TE47360	.	-	HELITRONY1E	Helitron	RC	60	tiny	447	high	7362532	chromoarm	32	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr2	10996016	10997012	AT2TE47365	.	-	ATREP1	Helitron	RC	997	short	498	high	7362592	chromoarm	92	.	.	.	.	.	.	.
Chr2	10997012	10997042	AT2TE47370	.	-	ATREP1	Helitron	RC	30	tiny	498	high	7363589	chromoarm	1089	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	10997042	10997146	AT2TE47375	.	-	ATREP1	Helitron	RC	104	short	498	high	7363619	chromoarm	1119	no-CHH	DCL3-RdDM	.	.	.	.	.
Chr2	10997146	10997372	AT2TE47380	.	-	ATREP9	Helitron	RC	226	short	201	high	7363723	chromoarm	1223	no-CHH	no-CHH	.	.	.	.	.
Chr2	11010072	11010228	AT2TE47440	.	-	ATHAT3	HAT	DNA	156	short	23	low	7376649	chromoarm	344	no-CHH	no-CHH	.	.	.	.	.
Chr2	11011137	11011335	AT2TE47445	.	+	ATENSPM2	En-Spm	DNA	198	short	114	medium	7377714	chromoarm	1322	no-CHH	no-CHH	.	.	.	.	.
Chr2	11014593	11014692	AT2TE47455	.	-	RathE3_cons	.	RathE3_cons	100	short	104	medium	7381169	chromoarm	293	.	.	.	.	.	.	.
Chr2	11040393	11040545	AT2TE47580	.	+	ATREP10D	Helitron	RC	152	short	1295	high	7406970	chromoarm	1271	no-CHH	no-CHH	.	.	.	.	.
Chr2	11040545	11041374	AT2TE47585	.	+	ATDNA2T9C	MuDR	DNA	829	short	242	high	7407122	chromoarm	442	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	11041374	11041546	AT2TE47590	.	-	ARNOLDY2	MuDR	DNA	172	short	288	high	7407951	chromoarm	270	no-CHH	no-CHH	.	.	.	.	.
Chr2	11041546	11041585	AT2TE47595	.	-	ATDNA2T9C	MuDR	DNA	39	tiny	242	high	7408123	chromoarm	231	no-CHH	no-CHH	.	.	.	.	.
Chr2	11041585	11041650	AT2TE47600	.	+	HELITRONY1D	Helitron	RC	65	tiny	756	high	7408162	chromoarm	166	no-CHH	no-CHH	.	.	.	.	.
Chr2	11043545	11043581	AT2TE47605	.	+	HELITRONY2	Helitron	RC	36	tiny	198	medium	7410122	chromoarm	781	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	11043581	11044727	AT2TE47610	.	-	ATREP10A	Helitron	RC	1146	short	279	high	7410158	chromoarm	817	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	11044727	11044995	AT2TE47615	.	-	ATREP11A	Helitron	RC	268	short	95	medium	7411304	chromoarm	1963	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	11048216	11048591	AT2TE47625	.	+	ATREP5	Helitron	RC	375	short	624	high	7414793	chromoarm	787	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr2	11048711	11048868	AT2TE47630	.	-	ATHATN3	HAT	DNA	157	short	70	medium	7415288	chromoarm	510	no-CHH	no-CHH	.	.	.	.	.
Chr2	11052250	11053460	AT2TE47640	.	-	ATREP16	MuDR	DNA	1210	short	47	low	7418827	chromoarm	253	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	11053460	11053497	AT2TE47645	.	-	HELITRONY1A	Helitron	RC	37	tiny	271	high	7420037	chromoarm	927	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	11053497	11054373	AT2TE47650	.	-	ATREP11	Helitron	RC	876	short	841	high	7420074	chromoarm	51	no-CHH	no-CHH	.	.	.	.	.
Chr2	11056039	11056202	AT2TE47655	.	-	ATMUN1	MuDR	DNA	163	short	107	medium	7422616	chromoarm	123	no-CHH	no-CHH	.	.	.	.	.
Chr2	11056381	11057088	AT2TE47660	.	-	ATREP15	Helitron	RC	707	short	1003	high	7422958	chromoarm	465	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	11057088	11057257	AT2TE47665	.	-	HELITRONY1D	Helitron	RC	169	short	756	high	7423665	chromoarm	1172	no-CHH	no-CHH	.	.	.	.	.
Chr2	11066245	11066852	AT2TE47710	.	-	BOMZH1	MuDR	DNA	607	short	28	low	7432822	chromoarm	225	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	11076535	11076577	AT2TE47760	.	+	ATCOPIA65	Copia	LTR	42	tiny	34	low	7443112	chromoarm	931	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr2	11076577	11077468	AT2TE47765	.	+	ATCOPIA65A	Copia	LTR	891	short	9	low	7443154	chromoarm	249	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	11077468	11077533	AT2TE47770	.	+	ATCOPIA40	Copia	LTR	65	tiny	6	low	7444045	chromoarm	184	no-CHH	no-CHH	.	.	.	.	.
Chr2	11080826	11080913	AT2TE47780	.	+	BRODYAGA1A	MuDR	DNA	87	tiny	586	high	7447403	chromoarm	160	no-CHH	no-CHH	.	.	.	.	.
Chr2	11080913	11081235	AT2TE47785	.	+	SIMPLEHAT1	HAT	DNA	322	short	56	medium	7447490	chromoarm	247	no-CHH	no-CHH	.	.	.	.	.
Chr2	11081249	11081712	AT2TE47790	.	+	TAG2	HAT	DNA	463	short	86	medium	7447826	chromoarm	583	no-CHH	no-CHH	.	.	.	.	.
Chr2	11093328	11093383	AT2TE47850	.	-	HELITRONY1E	Helitron	RC	55	tiny	447	high	7459905	chromoarm	328	no-CHH	no-CHH	.	.	.	.	.
Chr2	11093383	11093945	AT2TE47855	.	-	HELITRONY3	Helitron	RC	562	short	1399	high	7459960	chromoarm	383	no-CHH	no-CHH	.	.	.	.	.
Chr2	11095580	11096202	AT2TE47860	.	+	HELITRONY1E	Helitron	RC	622	short	447	high	7462157	chromoarm	176	no-CHH	no-CHH	.	.	.	.	.
Chr2	11096956	11097899	AT2TE47865	.	+	ATREP10D	Helitron	RC	943	short	1295	high	7463533	chromoarm	752	no-CHH	no-CHH	.	.	.	.	.
Chr2	11097899	11098540	AT2TE47870	.	-	ATHPOGON3	Pogo	DNA	641	short	118	medium	7464476	chromoarm	111	no-CHH	no-CHH	.	.	.	.	.
Chr2	11098540	11098600	AT2TE47875	.	-	ATHPOGON1	Pogo	DNA	60	tiny	174	medium	7465117	chromoarm	51	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr2	11098600	11098649	AT2TE47880	.	-	ATREP11	Helitron	RC	49	tiny	841	high	7465177	chromoarm	2	no-CHH	no-CHH	.	.	.	.	.
Chr2	11100008	11100067	AT2TE47885	.	+	ATREP3	Helitron	RC	59	tiny	1439	high	7466585	chromoarm	628	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	11100067	11101221	AT2TE47890	.	-	HELITRONY1E	Helitron	RC	1154	short	447	high	7466644	chromoarm	687	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	11101221	11102213	AT2TE47895	.	+	ATREP19	.	DNA	992	short	189	medium	7467798	chromoarm	186	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	11112075	11112133	AT2TE47940	.	+	ATCOPIA28	Copia	LTR	58	tiny	81	medium	7478652	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	11114951	11115275	AT2TE47950	.	+	HELITRONY2	Helitron	RC	324	short	198	medium	7481528	chromoarm	936	no-CHH	no-CHH	.	.	.	.	.
Chr2	11119125	11119267	AT2TE47960	.	-	ATHATN3	HAT	DNA	142	short	70	medium	7485702	chromoarm	996	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	11119528	11119583	AT2TE47965	.	+	ATREP3	Helitron	RC	55	tiny	1439	high	7486105	chromoarm	1285	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	11119583	11120449	AT2TE47970	.	-	HELITRONY1B	Helitron	RC	866	short	414	high	7486160	chromoarm	419	no-CHH	no-CHH	.	.	.	.	.
Chr2	11122307	11123199	AT2TE47975	.	-	ATREP10D	Helitron	RC	892	short	1295	high	7488884	chromoarm	230	no-CHH	no-CHH	.	.	.	.	.
Chr2	11123199	11123428	AT2TE47980	.	+	ATREP10C	Helitron	RC	229	short	123	medium	7489776	chromoarm	1	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	11129317	11129911	AT2TE48010	.	-	ATHATN7	HAT	DNA	594	short	71	medium	7495894	chromoarm	207	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	11141207	11141590	AT2TE48070	.	+	BRODYAGA2	MuDR	DNA	383	short	525	high	7507784	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	11161050	11161354	AT2TE48170	.	-	ATDNA1T9A	MuDR	DNA	304	short	36	low	7527627	chromoarm	2034	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	11162440	11162553	AT2TE48175	.	+	LIMPET1	MuDR	DNA	113	short	116	medium	7529017	chromoarm	2402	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	11162560	11162708	AT2TE48180	.	+	LIMPET1	MuDR	DNA	148	short	116	medium	7529137	chromoarm	2247	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	11162722	11163040	AT2TE48185	.	+	LIMPET1	MuDR	DNA	318	short	116	medium	7529299	chromoarm	1915	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	11163049	11163169	AT2TE48190	.	+	LIMPET1	MuDR	DNA	120	short	116	medium	7529626	chromoarm	1786	PolIV-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr2	11163908	11164086	AT2TE48195	.	-	VANDAL5A	MuDR	DNA	178	short	56	medium	7530485	chromoarm	869	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	11164219	11164547	AT2TE48200	.	+	ATTIRX1D	.	DNA	328	short	28	low	7530796	chromoarm	408	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	11164547	11164578	AT2TE48205	.	+	ATTIRX1C	.	DNA	31	tiny	39	low	7531124	chromoarm	377	no-CHH	no-CHH	.	.	.	.	.
Chr2	11168781	11168808	AT2TE48220	.	+	ATREP15	Helitron	RC	27	tiny	1003	high	7535358	chromoarm	408	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	11168808	11169097	AT2TE48225	.	+	ATREP3	Helitron	RC	289	short	1439	high	7535385	chromoarm	435	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	11169097	11169561	AT2TE48230	.	-	HELITRONY1D	Helitron	RC	464	short	756	high	7535674	chromoarm	724	no-CHH	no-CHH	.	.	.	.	.
Chr2	11169561	11169959	AT2TE48235	.	+	ATREP4	Helitron	RC	398	short	832	high	7536138	chromoarm	839	no-CHH	no-CHH	.	.	.	.	.
Chr2	11183383	11183574	AT2TE48300	.	+	ATLINE1A	L1	LINE	191	short	289	high	7549960	chromoarm	511	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	11191410	11191767	AT2TE48340	.	-	BRODYAGA1A	MuDR	DNA	357	short	586	high	7557987	chromoarm	469	no-CHH	no-CHH	.	.	.	.	.
Chr2	11204311	11205412	AT2TE48400	.	+	ATREP7	Helitron	RC	1101	short	164	medium	7570888	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	11206170	11206239	AT2TE48405	.	+	ATREP10A	Helitron	RC	69	tiny	279	high	7572747	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	11206239	11206285	AT2TE48410	.	-	HELITRONY1E	Helitron	RC	46	tiny	447	high	7572816	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	11206285	11206358	AT2TE48415	.	-	HELITRONY1E	Helitron	RC	73	tiny	447	high	7572862	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	11206358	11207538	AT2TE48420	.	+	HELITRONY3	Helitron	RC	1180	short	1399	high	7572935	chromoarm	71	no-CHH	no-CHH	.	.	.	.	.
Chr2	11207538	11207581	AT2TE48425	.	+	ATREP4	Helitron	RC	43	tiny	832	high	7574115	chromoarm	785	no-CHH	no-CHH	.	.	.	.	.
Chr2	11216938	11217199	AT2TE48470	.	+	HARBINGER	Harbinger	DNA	261	short	90	medium	7583515	chromoarm	0	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	11217199	11217399	AT2TE48475	.	+	SIMPLEGUY1	Harbinger	DNA	200	short	116	medium	7583776	chromoarm	208	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr2	11230834	11231050	AT2TE48540	.	-	ATHILA7	Gypsy	LTR	216	short	134	medium	7597411	chromoarm	343	no-CHH	no-CHH	.	.	.	.	.
Chr2	11231327	11231584	AT2TE48545	.	-	HELITRONY2	Helitron	RC	257	short	198	medium	7597904	chromoarm	473	no-CHH	no-CHH	.	.	.	.	.
Chr2	11237442	11237778	AT2TE48570	.	+	ATMUNX1	MuDR	DNA	336	short	155	medium	7604019	chromoarm	723	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	11266044	11267285	AT2TE48710	.	-	BRODYAGA1	MuDR	DNA	1241	short	251	high	7632621	chromoarm	472	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	11269550	11270059	AT2TE48720	.	-	ATREP15	Helitron	RC	509	short	1003	high	7636127	chromoarm	118	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	11281550	11281819	AT2TE48780	.	+	ATHILA7	Gypsy	LTR	269	short	134	medium	7648127	chromoarm	833	no-CHH	no-CHH	.	.	.	.	.
Chr2	11284272	11285063	AT2TE48790	.	-	ATREP10D	Helitron	RC	791	short	1295	high	7650849	chromoarm	283	no-CHH	no-CHH	.	.	.	.	.
Chr2	11285066	11287457	AT2TE48795	.	-	ATREP3	Helitron	RC	2391	medium	1439	high	7651643	chromoarm	208	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	11287469	11287580	AT2TE48800	.	+	HELITRONY3	Helitron	RC	111	short	1399	high	7654046	chromoarm	85	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	11302120	11302228	AT2TE48870	.	-	ATREP11	Helitron	RC	108	short	841	high	7668697	chromoarm	44	no-CHH	no-CHH	.	.	.	.	.
Chr2	11302228	11302785	AT2TE48875	.	-	BRODYAGA1A	MuDR	DNA	557	short	586	high	7668805	chromoarm	152	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	11302785	11302822	AT2TE48880	.	-	ATREP19	.	DNA	37	tiny	189	medium	7669362	chromoarm	709	no-CHH	no-CHH	.	.	.	.	.
Chr2	11302822	11303056	AT2TE48885	.	+	ATREP10D	Helitron	RC	234	short	1295	high	7669399	chromoarm	746	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	11303964	11304549	AT2TE48890	.	-	ATREP3	Helitron	RC	585	short	1439	high	7670541	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	11308484	11309168	AT2TE48900	.	-	ATHPOGON1	Pogo	DNA	684	short	174	medium	7675061	chromoarm	1745	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	11309168	11309613	AT2TE48905	.	-	ATREP4	Helitron	RC	445	short	832	high	7675745	chromoarm	1568	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	11315222	11315334	AT2TE48930	.	-	ATMUNX1	MuDR	DNA	112	short	155	medium	7681799	chromoarm	505	no-CHH	no-CHH	.	.	.	.	.
Chr2	11327944	11328800	AT2TE48990	.	+	HARBINGER	Harbinger	DNA	856	short	90	medium	7694521	chromoarm	1109	no-RdDM	no-RdDM	ExpressedAndAnnotated	11327519,11327519,11327519,11327522,11327522,11327524	11328578,11328826,11329251,11328588,11328850,11329254	+,+,+,+,+,+	transcript_id-"9030f550-6d6a-4b62-b6ce-297ea3287f27|18",transcript_id-"8fa39344-7442-4f91-8e74-c68a339b2c2a|58",transcript_id-"8b7b8cfc-5d2e-43d1-808a-2f4a6f49538b|6",transcript_id-"bcea213a-070c-4944-a583-8111ded4dbad|4",transcript_id-"93ee065a-58fb-4730-ad72-636d8544172d|16",transcript_id-"2f83cd20-0a6d-487d-a370-7adeacbee4c0|3"
Chr2	11337570	11337804	AT2TE49030	.	+	TA11	L1	LINE	234	short	157	medium	7704147	chromoarm	1126	no-CHH	no-CHH	.	.	.	.	.
Chr2	11345471	11346534	AT2TE49070	.	-	ATREP19	.	DNA	1063	short	189	medium	7712048	chromoarm	183	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	11346534	11346585	AT2TE49075	.	+	ATMUN1	MuDR	DNA	51	tiny	107	medium	7713111	chromoarm	761	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr2	11358393	11358813	AT2TE49130	.	+	ATHPOGON1	Pogo	DNA	420	short	174	medium	7724970	chromoarm	6461	no-CHH	no-CHH	.	.	.	.	.
Chr2	11359967	11360206	AT2TE49135	.	+	ATLINE1_4	L1	LINE	239	short	102	medium	7726544	chromoarm	5068	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	11362714	11363023	AT2TE49145	.	-	DT1	Mariner	DNA	309	short	123	medium	7729291	chromoarm	2251	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	11366533	11367320	AT2TE49155	.	+	ATREP15	Helitron	RC	787	short	1003	high	7733110	chromoarm	744	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	11367320	11368003	AT2TE49160	.	+	HELITRONY3	Helitron	RC	683	short	1399	high	7733897	chromoarm	609	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	11373153	11374305	AT2TE49190	.	-	ATREP3	Helitron	RC	1152	short	1439	high	7739730	chromoarm	2202	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	11376099	11376152	AT2TE49195	.	-	ATHILA5	Gypsy	LTR	53	tiny	131	medium	7742676	chromoarm	4547	no-CHH	no-CHH	.	.	.	.	.
Chr2	11376152	11376347	AT2TE49200	.	-	ATHILA0_I	Gypsy	LTR	195	short	138	medium	7742729	chromoarm	4352	no-CHH	no-CHH	.	.	.	.	.
Chr2	11378374	11378540	AT2TE49210	.	+	HELITRONY1D	Helitron	RC	166	short	756	high	7744951	chromoarm	2159	no-CHH	no-CHH	.	.	.	.	.
Chr2	11378540	11379063	AT2TE49215	.	-	ATHILA4D_LTR	Gypsy	LTR	523	short	106	medium	7745117	chromoarm	1636	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	11379063	11379105	AT2TE49220	.	-	ATHILA4A	Gypsy	LTR	42	tiny	310	high	7745640	chromoarm	1594	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	11379176	11379214	AT2TE49225	.	-	TNAT1A	.	DNA	38	tiny	162	medium	7745753	chromoarm	1485	no-CHH	no-CHH	.	.	.	.	.
Chr2	11379214	11380315	AT2TE49230	.	+	ATREP15	Helitron	RC	1101	short	1003	high	7745791	chromoarm	384	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	11386228	11386333	AT2TE49260	.	+	ATHATN6	HAT	DNA	105	short	43	low	7752805	chromoarm	826	no-CHH	no-CHH	.	.	.	.	.
Chr2	11386397	11386718	AT2TE49265	.	-	HELITRON3	Helitron	RC	321	short	53	medium	7752974	chromoarm	995	no-CHH	no-CHH	.	.	.	.	.
Chr2	11386831	11387491	AT2TE49270	.	-	ATCOPIA41	Copia	LTR	660	short	39	low	7753408	chromoarm	1129	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	11394488	11394541	AT2TE49310	.	+	HELITRONY3	Helitron	RC	53	tiny	1399	high	7761065	chromoarm	231	no-CHH	no-CHH	.	.	.	.	.
Chr2	11394541	11394735	AT2TE49315	.	-	ATREP3	Helitron	RC	194	short	1439	high	7761118	chromoarm	284	no-CHH	no-CHH	.	.	.	.	.
Chr2	11394735	11395776	AT2TE49320	.	+	ATREP19	.	DNA	1041	short	189	medium	7761312	chromoarm	194	no-CHH	no-CHH	.	.	.	.	.
Chr2	11395776	11395883	AT2TE49325	.	+	HELITRONY2	Helitron	RC	107	short	198	medium	7762353	chromoarm	87	no-CHH	no-CHH	.	.	.	.	.
Chr2	11395883	11396031	AT2TE49330	.	-	ATREP3	Helitron	RC	148	short	1439	high	7762460	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	11397207	11400204	AT2TE49335	.	-	ATREP10D	Helitron	RC	2997	medium	1295	high	7763784	chromoarm	122	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	11397761	11398385	AT2TE49340	.	+	ATHATN7	HAT	DNA	624	short	71	medium	7764338	chromoarm	676	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	11398388	11398505	AT2TE49345	.	-	ATREP15	Helitron	RC	117	short	1003	high	7764965	chromoarm	1303	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	11398505	11399580	AT2TE49350	.	-	ATREP3	Helitron	RC	1075	short	1439	high	7765082	chromoarm	1420	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	11428499	11428657	AT2TE49500	.	+	HELITRONY1B	Helitron	RC	158	short	414	high	7795076	chromoarm	534	no-CHH	no-RdDM	.	.	.	.	.
Chr2	11433362	11433612	AT2TE49520	.	-	VANDALNX2	MuDR	DNA	250	short	37	low	7799939	chromoarm	287	no-CHH	no-CHH	.	.	.	.	.
Chr2	11436292	11436322	AT2TE49530	.	-	BRODYAGA2	MuDR	DNA	30	tiny	525	high	7802869	chromoarm	214	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	11436322	11437017	AT2TE49535	.	-	ATHPOGON3	Pogo	DNA	695	short	118	medium	7802899	chromoarm	244	no-RdDM	no-CHH	.	.	.	.	.
Chr2	11437017	11437187	AT2TE49540	.	-	ATREP9	Helitron	RC	170	short	201	high	7803594	chromoarm	620	no-CHH	no-CHH	.	.	.	.	.
Chr2	11437187	11437209	AT2TE49545	.	+	ATREP4	Helitron	RC	22	tiny	832	high	7803764	chromoarm	598	no-CHH	no-CHH	.	.	.	.	.
Chr2	11438931	11439470	AT2TE49550	.	+	HELITRONY1D	Helitron	RC	539	short	756	high	7805508	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	11453982	11454073	AT2TE49620	.	+	ATENSPM2	En-Spm	DNA	91	tiny	114	medium	7820559	chromoarm	398	no-CHH	no-CHH	.	.	.	.	.
Chr2	11461331	11461532	AT2TE49660	.	+	ATSINE4	.	SINE	202	short	98	medium	7827907	chromoarm	557	.	.	.	.	.	.	.
Chr2	11478285	11478423	AT2TE49750	.	-	HELITRON1	Helitron	RC	138	short	130	medium	7844862	chromoarm	415	no-CHH	no-CHH	.	.	.	.	.
Chr2	11480704	11481134	AT2TE49760	.	-	HELITRONY2	Helitron	RC	430	short	198	medium	7847281	chromoarm	488	no-CHH	no-CHH	.	.	.	.	.
Chr2	11481139	11481290	AT2TE49765	.	-	ATREP11	Helitron	RC	151	short	841	high	7847716	chromoarm	332	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	11495111	11495420	AT2TE49830	.	+	TSCL	.	LINE?	309	short	81	medium	7861688	chromoarm	882	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	11498450	11499890	AT2TE49840	.	-	HELITRONY3	Helitron	RC	1440	short	1399	high	7865027	chromoarm	830	no-CHH	no-CHH	.	.	.	.	.
Chr2	11502877	11503092	AT2TE49850	.	-	HELITRONY1E	Helitron	RC	215	short	447	high	7869454	chromoarm	804	no-CHH	no-CHH	.	.	.	.	.
Chr2	11503092	11503679	AT2TE49855	.	-	ATREP11	Helitron	RC	587	short	841	high	7869669	chromoarm	1019	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	11503685	11504304	AT2TE49860	.	-	ARNOLDY2	MuDR	DNA	619	short	288	high	7870262	chromoarm	1612	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	11504304	11504327	AT2TE49865	.	-	ARNOLDY1	MuDR	DNA	23	tiny	237	high	7870881	chromoarm	1737	no-CHH	no-CHH	.	.	.	.	.
Chr2	11504377	11504852	AT2TE49870	.	-	ATHILA8A	Gypsy	LTR	475	short	97	medium	7870954	chromoarm	1212	no-CHH	no-CHH	.	.	.	.	.
Chr2	11504852	11505335	AT2TE49875	.	+	ATLINEIII	L1	LINE	483	short	196	medium	7871429	chromoarm	729	no-CHH	no-CHH	.	.	.	.	.
Chr2	11508128	11508158	AT2TE49885	.	-	ATREP3	Helitron	RC	30	tiny	1439	high	7874705	chromoarm	703	no-CHH	no-CHH	.	.	.	.	.
Chr2	11508158	11508795	AT2TE49890	.	-	ATREP10D	Helitron	RC	637	short	1295	high	7874735	chromoarm	733	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	11511982	11512128	AT2TE49900	.	+	ATTIRTA1	Tc1	DNA	146	short	95	medium	7878559	chromoarm	79	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	11518333	11518400	AT2TE49930	.	-	ATENSPM10	En-Spm	DNA	67	tiny	81	medium	7884910	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	11522542	11523084	AT2TE49950	.	-	HELITRONY2	Helitron	RC	542	short	198	medium	7889119	chromoarm	130	no-CHH	no-CHH	.	.	.	.	.
Chr2	11545308	11545443	AT2TE50060	.	-	ATMU7	MuDR	DNA	135	short	32	low	7911885	chromoarm	870	no-CHH	DCL3-RdDM	.	.	.	.	.
Chr2	11555108	11555131	AT2TE50110	.	-	ATHILA7	Gypsy	LTR	23	tiny	134	medium	7921685	chromoarm	531	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	11555131	11555401	AT2TE50115	.	-	ATREP10A	Helitron	RC	270	short	279	high	7921708	chromoarm	379	no-CHH	no-RdDM	.	.	.	.	.
Chr2	11555401	11556304	AT2TE50120	.	-	ATREP10	Helitron	RC	903	short	63	medium	7921978	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	11556927	11557009	AT2TE50125	.	-	TAG3N1	HAT	DNA	82	tiny	97	medium	7923504	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	11559056	11559448	AT2TE50135	.	+	HELITRONY1E	Helitron	RC	392	short	447	high	7925633	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	11559448	11561789	AT2TE50140	.	+	ATREP15	Helitron	RC	2341	medium	1003	high	7926025	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	11561789	11561922	AT2TE50145	.	+	ATREP15	Helitron	RC	133	short	1003	high	7928366	chromoarm	1574	no-CHH	no-CHH	.	.	.	.	.
Chr2	11561922	11562234	AT2TE50150	.	+	ATREP3	Helitron	RC	312	short	1439	high	7928499	chromoarm	1707	no-CHH	no-CHH	.	.	.	.	.
Chr2	11562234	11562459	AT2TE50155	.	-	ATREP15	Helitron	RC	225	short	1003	high	7928811	chromoarm	2019	no-CHH	no-CHH	.	.	.	.	.
Chr2	11562459	11563485	AT2TE50160	.	-	ATREP10D	Helitron	RC	1026	short	1295	high	7929036	chromoarm	2244	no-CHH	no-CHH	.	.	.	.	.
Chr2	11563485	11563604	AT2TE50165	.	+	ATREP9	Helitron	RC	119	short	201	high	7930062	chromoarm	2778	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr2	11565332	11565968	AT2TE50170	.	-	HELITRONY1D	Helitron	RC	636	short	756	high	7931909	chromoarm	414	no-CHH	no-CHH	.	.	.	.	.
Chr2	11596621	11597228	AT2TE50330	.	-	HELITRONY1B	Helitron	RC	607	short	414	high	7963198	chromoarm	226	no-CHH	no-CHH	.	.	.	.	.
Chr2	11597228	11598019	AT2TE50335	.	+	ATREP2A	Helitron	RC	791	short	116	medium	7963805	chromoarm	476	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	11598019	11598370	AT2TE50340	.	+	ATREP2	Helitron	RC	351	short	164	medium	7964596	chromoarm	125	no-CHH	no-CHH	.	.	.	.	.
Chr2	11599694	11599817	AT2TE50345	.	-	ATLINE2	L1	LINE	123	short	138	medium	7966271	chromoarm	375	no-CHH	no-CHH	.	.	.	.	.
Chr2	11623537	11623633	AT2TE50460	.	-	ATREP15	Helitron	RC	96	tiny	1003	high	7990114	chromoarm	99	no-CHH	no-CHH	.	.	.	.	.
Chr2	11623910	11624045	AT2TE50465	.	+	ATTIR16T3A	.	DNA	136	short	106	medium	7990486	chromoarm	471	.	.	.	.	.	.	.
Chr2	11624046	11624370	AT2TE50470	.	+	ATTIRX1D	.	DNA	324	short	28	low	7990623	chromoarm	608	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	11624370	11625294	AT2TE50475	.	-	HELITRONY1E	Helitron	RC	924	short	447	high	7990947	chromoarm	154	no-CHH	no-CHH	.	.	.	.	.
Chr2	11641429	11641534	AT2TE50550	.	+	ATLINE1_2	L1	LINE	105	short	41	low	8008006	chromoarm	1922	no-CHH	no-CHH	.	.	.	.	.
Chr2	11642913	11643072	AT2TE50555	.	-	RathE3_cons	.	RathE3_cons	159	short	104	medium	8009490	chromoarm	3406	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	11643087	11643110	AT2TE50560	.	+	TNAT2A	.	DNA	23	tiny	38	low	8009664	chromoarm	3580	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	11643110	11643280	AT2TE50565	.	+	TNAT2A	.	DNA	170	short	38	low	8009687	chromoarm	3603	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	11643280	11644011	AT2TE50570	.	+	TNAT2A	.	DNA	731	short	38	low	8009857	chromoarm	3773	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	11643827	11643848	AT2TE50575	.	+	TNAT2A	.	DNA	21	tiny	38	low	8010404	chromoarm	4320	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	11644407	11645378	AT2TE50580	.	+	ATDNA2T9C	MuDR	DNA	971	short	242	high	8010984	chromoarm	3804	no-CHH	no-CHH	.	.	.	.	.
Chr2	11655444	11656674	AT2TE50630	.	+	ATCOPIA71	Copia	LTR	1230	short	9	low	8022021	chromoarm	1604	no-CHH	no-CHH	.	.	.	.	.
Chr2	11662400	11662895	AT2TE50660	.	+	HELITRONY1B	Helitron	RC	495	short	414	high	8028977	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	11663671	11664656	AT2TE50665	.	-	ATREP19	.	DNA	985	short	189	medium	8030248	chromoarm	529	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	11663721	11663984	AT2TE50670	.	+	DT1	Mariner	DNA	264	short	123	medium	8030297	chromoarm	1201	.	.	.	.	.	.	.
Chr2	11666416	11666797	AT2TE50680	.	+	ATREP10C	Helitron	RC	381	short	123	medium	8032993	chromoarm	672	no-CHH	no-CHH	.	.	.	.	.
Chr2	11670687	11670804	AT2TE50690	.	+	HARBINGER	Harbinger	DNA	117	short	90	medium	8037264	chromoarm	187	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	11671081	11671242	AT2TE50695	.	+	HARBINGER	Harbinger	DNA	161	short	90	medium	8037658	chromoarm	581	no-CHH	no-CHH	.	.	.	.	.
Chr2	11682722	11683353	AT2TE50750	.	-	ATHATN10	HAT	DNA	631	short	48	low	8049299	chromoarm	600	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	11686048	11686159	AT2TE50760	.	-	ATREP3	Helitron	RC	111	short	1439	high	8052625	chromoarm	1081	no-CHH	no-CHH	.	.	.	.	.
Chr2	11686159	11687141	AT2TE50765	.	-	HELITRONY1D	Helitron	RC	982	short	756	high	8052736	chromoarm	1192	no-CHH	no-CHH	.	.	.	.	.
Chr2	11687141	11687289	AT2TE50770	.	-	ATREP3	Helitron	RC	148	short	1439	high	8053718	chromoarm	2174	no-CHH	no-CHH	.	.	.	.	.
Chr2	11687289	11688149	AT2TE50775	.	+	ATREP11	Helitron	RC	860	short	841	high	8053866	chromoarm	1441	no-CHH	no-CHH	.	.	.	.	.
Chr2	11688149	11688173	AT2TE50780	.	-	ATREP4	Helitron	RC	24	tiny	832	high	8054726	chromoarm	1417	no-CHH	no-CHH	.	.	.	.	.
Chr2	11696415	11696560	AT2TE50820	.	-	ATDNAI27T9A	MuDR	DNA	145	short	116	medium	8062992	chromoarm	0	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	11708095	11708603	AT2TE50880	.	+	HELITRONY1D	Helitron	RC	508	short	756	high	8074672	chromoarm	24	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	11711113	11711365	AT2TE50890	.	+	ATLINE1_6	L1	LINE	252	short	129	medium	8077690	chromoarm	1208	no-CHH	no-CHH	.	.	.	.	.
Chr2	11723545	11723878	AT2TE50950	.	+	ATCOPIA50	Copia	LTR	333	short	17	low	8090122	chromoarm	152	no-CHH	no-CHH	.	.	.	.	.
Chr2	11732160	11732714	AT2TE50990	.	+	HELITRONY1E	Helitron	RC	554	short	447	high	8098737	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	11740245	11740396	AT2TE51030	.	-	ATHILA7A	Gypsy	LTR	151	short	31	low	8106822	chromoarm	273	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	11745218	11745628	AT2TE51050	.	+	VANDAL17	MuDR	DNA	410	short	178	medium	8111795	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	11750072	11750268	AT2TE51070	.	-	VANDAL21	MuDR	DNA	196	short	64	medium	8116649	chromoarm	1063	no-CHH	no-CHH	.	.	.	.	.
Chr2	11750268	11750302	AT2TE51075	.	-	ATENSPM6	En-Spm	DNA	34	tiny	151	medium	8116845	chromoarm	1259	no-CHH	RDR6-RdDM	.	.	.	.	.
Chr2	11759638	11760124	AT2TE51120	.	-	ATREP9	Helitron	RC	486	short	201	high	8126215	chromoarm	890	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	11760358	11761198	AT2TE51125	.	+	ATREP11	Helitron	RC	841	short	841	high	8126934	chromoarm	862	.	.	.	.	.	.	.
Chr2	11766198	11766793	AT2TE51150	.	-	HELITRONY1D	Helitron	RC	595	short	756	high	8132775	chromoarm	261	no-CHH	no-CHH	.	.	.	.	.
Chr2	11766799	11766850	AT2TE51155	.	+	ATDNA2T9C	MuDR	DNA	51	tiny	242	high	8133376	chromoarm	862	no-CHH	no-CHH	.	.	.	.	.
Chr2	11767793	11767934	AT2TE51160	.	+	ATCOPIA32	Copia	LTR	141	short	8	low	8134370	chromoarm	1039	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	11769478	11769515	AT2TE51165	.	-	ATREP10B	Helitron	RC	37	tiny	491	high	8136055	chromoarm	397	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	11769515	11770995	AT2TE51170	.	+	ATREP10D	Helitron	RC	1480	short	1295	high	8136092	chromoarm	434	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	11774872	11774927	AT2TE51180	.	-	ATLINEIII	L1	LINE	55	tiny	196	medium	8141449	chromoarm	363	no-CHH	no-CHH	.	.	.	.	.
Chr2	11786646	11786949	AT2TE51240	.	+	ATMU7	MuDR	DNA	303	short	32	low	8153223	chromoarm	113	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	11786975	11787295	AT2TE51245	.	-	ATMU7	MuDR	DNA	321	short	32	low	8153551	chromoarm	373	.	.	.	.	.	.	.
Chr2	11789724	11789816	AT2TE51255	.	+	HELITRON5	Helitron	RC	92	tiny	56	medium	8156301	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	11795032	11795125	AT2TE51280	.	+	HELITRON5	Helitron	RC	93	tiny	56	medium	8161609	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	11807275	11807436	AT2TE51340	.	-	ATREP10D	Helitron	RC	161	short	1295	high	8173852	chromoarm	1310	no-CHH	no-CHH	.	.	.	.	.
Chr2	11807436	11809161	AT2TE51345	.	-	ATREP15	Helitron	RC	1725	short	1003	high	8174013	chromoarm	211	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	11809161	11809318	AT2TE51350	.	+	ATREP3	Helitron	RC	157	short	1439	high	8175738	chromoarm	54	no-CHH	no-CHH	.	.	.	.	.
Chr2	11811508	11811586	AT2TE51360	.	-	ATREP10D	Helitron	RC	78	tiny	1295	high	8178085	chromoarm	648	no-CHH	no-CHH	.	.	.	.	.
Chr2	11811586	11811674	AT2TE51365	.	-	HELITRONY1E	Helitron	RC	88	tiny	447	high	8178163	chromoarm	726	no-CHH	no-CHH	.	.	.	.	.
Chr2	11811674	11812706	AT2TE51370	.	+	ATREP15	Helitron	RC	1032	short	1003	high	8178251	chromoarm	814	no-CHH	no-CHH	.	.	.	.	.
Chr2	11816135	11816602	AT2TE51380	.	-	BRODYAGA1A	MuDR	DNA	467	short	586	high	8182712	chromoarm	133	no-CHH	no-CHH	.	.	.	.	.
Chr2	11834406	11834872	AT2TE51470	.	-	ATREP9	Helitron	RC	466	short	201	high	8200983	chromoarm	355	no-CHH	no-CHH	.	.	.	.	.
Chr2	11834872	11834913	AT2TE51475	.	-	ATREP10B	Helitron	RC	41	tiny	491	high	8201449	chromoarm	821	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	11839222	11839455	AT2TE51490	.	-	VANDALNX2	MuDR	DNA	233	short	37	low	8205799	chromoarm	3363	no-CHH	no-CHH	.	.	.	.	.
Chr2	11839565	11839646	AT2TE51495	.	+	ATHILA	Gypsy	LTR	81	tiny	198	medium	8206142	chromoarm	3172	no-CHH	no-CHH	.	.	.	.	.
Chr2	11844653	11845028	AT2TE51520	.	-	ATHPOGON1	Pogo	DNA	375	short	174	medium	8211230	chromoarm	443	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	11845028	11845062	AT2TE51525	.	-	ATHPOGON1	Pogo	DNA	34	tiny	174	medium	8211605	chromoarm	409	no-CHH	no-CHH	.	.	.	.	.
Chr2	11867185	11868276	AT2TE51630	.	-	ATLINE2	L1	LINE	1091	short	138	medium	8233762	chromoarm	342	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	11891452	11891938	AT2TE51750	.	-	BRODYAGA1	MuDR	DNA	486	short	251	high	8258029	chromoarm	430	no-CHH	no-CHH	.	.	.	.	.
Chr2	11895001	11895297	AT2TE51760	.	+	ATCOPIA32	Copia	LTR	296	short	8	low	8261578	chromoarm	1513	no-CHH	no-CHH	.	.	.	.	.
Chr2	11895804	11896075	AT2TE51765	.	-	ATREP15	Helitron	RC	271	short	1003	high	8262381	chromoarm	1887	no-CHH	no-CHH	.	.	.	.	.
Chr2	11904154	11905009	AT2TE51800	.	-	HELITRONY3	Helitron	RC	855	short	1399	high	8270731	chromoarm	983	no-CHH	no-CHH	.	.	.	.	.
Chr2	11908689	11908867	AT2TE51810	.	+	VANDAL8	MuDR	DNA	178	short	123	medium	8275266	chromoarm	2035	no-RdDM	no-CHH	.	.	.	.	.
Chr2	11908867	11909851	AT2TE51815	.	-	ATREP1	Helitron	RC	984	short	498	high	8275444	chromoarm	1051	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	11909851	11910374	AT2TE51820	.	-	HELITRONY3	Helitron	RC	523	short	1399	high	8276428	chromoarm	528	no-CHH	no-CHH	.	.	.	.	.
Chr2	11920715	11921191	AT2TE51870	.	-	ATLINE1_1	L1	LINE	476	short	61	medium	8287292	chromoarm	348	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	11921191	11921236	AT2TE51875	.	-	ATLINE1_2	L1	LINE	45	tiny	41	low	8287768	chromoarm	303	no-CHH	no-CHH	.	.	.	.	.
Chr2	11931783	11931808	AT2TE51920	.	+	ATREP4	Helitron	RC	25	tiny	832	high	8298360	chromoarm	14	no-CHH	no-CHH	.	.	.	.	.
Chr2	11931808	11932911	AT2TE51925	.	-	ATREP10D	Helitron	RC	1103	short	1295	high	8298385	chromoarm	39	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	11937425	11937800	AT2TE51940	.	-	ATREP19	.	DNA	375	short	189	medium	8304002	chromoarm	35	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	11937800	11937864	AT2TE51945	.	-	ATREP10	Helitron	RC	64	tiny	63	medium	8304377	chromoarm	400	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	11939859	11940070	AT2TE51955	.	-	ATCOPIA77	Copia	LTR	211	short	6	low	8306436	chromoarm	206	no-CHH	no-CHH	.	.	.	.	.
Chr2	11940070	11940894	AT2TE51960	.	-	ATREP15	Helitron	RC	824	short	1003	high	8306647	chromoarm	417	no-CHH	no-CHH	.	.	.	.	.
Chr2	11948631	11948942	AT2TE52000	.	-	ATREP15	Helitron	RC	311	short	1003	high	8315208	chromoarm	1231	no-RdDM	no-CHH	.	.	.	.	.
Chr2	11948942	11949404	AT2TE52005	.	+	VANDALNX2	MuDR	DNA	462	short	37	low	8315519	chromoarm	769	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	11949404	11949657	AT2TE52010	.	+	ATTIRTA1	Tc1	DNA	253	short	95	medium	8315981	chromoarm	516	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	11952512	11952791	AT2TE52020	.	+	ATHILA7	Gypsy	LTR	279	short	134	medium	8319089	chromoarm	1894	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	11962017	11962610	AT2TE52070	.	+	ATREP9	Helitron	RC	593	short	201	high	8328594	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	11963578	11964336	AT2TE52075	.	-	HELITRONY1E	Helitron	RC	758	short	447	high	8330155	chromoarm	351	no-CHH	no-CHH	.	.	.	.	.
Chr2	11964336	11964597	AT2TE52080	.	+	ATLINE1_3A	L1	LINE	261	short	160	medium	8330913	chromoarm	1109	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	11964737	11964853	AT2TE52085	.	+	TSCL	.	LINE?	116	short	81	medium	8331314	chromoarm	1510	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	11980265	11980875	AT2TE52160	.	-	HELITRONY1B	Helitron	RC	610	short	414	high	8346842	chromoarm	624	no-CHH	no-CHH	.	.	.	.	.
Chr2	11982480	11983952	AT2TE52165	.	-	ATDNA2T9B	MuDR	DNA	1472	short	26	low	8349057	chromoarm	1981	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	11991425	11991656	AT2TE52200	.	-	ATREP4	Helitron	RC	231	short	832	high	8358002	chromoarm	28	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	11991656	11991784	AT2TE52205	.	-	ATREP5	Helitron	RC	128	short	624	high	8358233	chromoarm	259	no-CHH	no-CHH	.	.	.	.	.
Chr2	11991784	11993117	AT2TE52210	.	+	ATREP10D	Helitron	RC	1333	short	1295	high	8358361	chromoarm	387	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	11993117	11993984	AT2TE52215	.	-	ATREP10D	Helitron	RC	867	short	1295	high	8359694	chromoarm	1106	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	12003595	12004663	AT2TE52260	.	+	ATREP3	Helitron	RC	1068	short	1439	high	8370172	chromoarm	49	no-CHH	no-CHH	.	.	.	.	.
Chr2	12030405	12030431	AT2TE52390	.	-	BRODYAGA2	MuDR	DNA	26	tiny	525	high	8396982	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	12030431	12031917	AT2TE52395	.	+	ATREP15	Helitron	RC	1486	short	1003	high	8397008	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	12031917	12032096	AT2TE52400	.	+	HELITRONY1B	Helitron	RC	179	short	414	high	8398494	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	12035731	12036367	AT2TE52410	.	+	HELITRONY1B	Helitron	RC	636	short	414	high	8402308	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	12046997	12047238	AT2TE52460	.	-	ATLINE1_5	L1	LINE	241	short	91	medium	8413574	chromoarm	658	no-CHH	no-CHH	.	.	.	.	.
Chr2	12073562	12073977	AT2TE52590	.	-	ATREP10D	Helitron	RC	415	short	1295	high	8440139	chromoarm	612	no-CHH	no-CHH	.	.	.	.	.
Chr2	12074613	12074949	AT2TE52595	.	-	ATTIRX1B	.	DNA	336	short	44	low	8441190	chromoarm	1663	no-CHH	no-CHH	.	.	.	.	.
Chr2	12085363	12085654	AT2TE52640	.	-	VANDAL5	MuDR	DNA	291	short	85	medium	8451940	chromoarm	118	no-CHH	no-CHH	.	.	.	.	.
Chr2	12091952	12094487	AT2TE52670	.	+	ATREP3	Helitron	RC	2535	medium	1439	high	8458529	chromoarm	673	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	12094487	12094534	AT2TE52675	.	+	ATREP3	Helitron	RC	47	tiny	1439	high	8461064	chromoarm	626	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	12101010	12101384	AT2TE52700	.	-	ATREP15	Helitron	RC	374	short	1003	high	8467587	chromoarm	387	no-CHH	no-CHH	.	.	.	.	.
Chr2	12101384	12101585	AT2TE52705	.	+	TNAT1A	.	DNA	201	short	162	medium	8467961	chromoarm	761	no-CHH	no-CHH	.	.	.	.	.
Chr2	12101585	12102637	AT2TE52710	.	-	ATREP11	Helitron	RC	1052	short	841	high	8468162	chromoarm	962	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	12106749	12107260	AT2TE52730	.	+	ATREP4	Helitron	RC	511	short	832	high	8473326	chromoarm	577	no-CHH	no-CHH	.	.	.	.	.
Chr2	12110064	12110272	AT2TE52740	.	-	HELITRONY1B	Helitron	RC	208	short	414	high	8476641	chromoarm	3892	no-CHH	no-CHH	.	.	.	.	.
Chr2	12110272	12111286	AT2TE52745	.	-	ATREP5	Helitron	RC	1014	short	624	high	8476849	chromoarm	3044	no-CHH	no-CHH	.	.	.	.	.
Chr2	12118075	12118224	AT2TE52770	.	+	HELITRONY1A	Helitron	RC	149	short	271	high	8484652	chromoarm	1163	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	12118224	12119159	AT2TE52775	.	+	HELITRONY2	Helitron	RC	935	short	198	medium	8484801	chromoarm	228	no-CHH	no-CHH	.	.	.	.	.
Chr2	12119159	12119764	AT2TE52780	.	+	ATREP1	Helitron	RC	605	short	498	high	8485736	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	12120407	12120587	AT2TE52785	.	-	DT1	Mariner	DNA	180	short	123	medium	8486984	chromoarm	318	no-CHH	no-CHH	.	.	.	.	.
Chr2	12120823	12120873	AT2TE52790	.	+	ATMUN1	MuDR	DNA	50	tiny	107	medium	8487400	chromoarm	734	no-CHH	no-CHH	.	.	.	.	.
Chr2	12120873	12121656	AT2TE52795	.	+	HELITRONY1E	Helitron	RC	783	short	447	high	8487450	chromoarm	784	no-CHH	no-CHH	.	.	.	.	.
Chr2	12122824	12123309	AT2TE52800	.	-	BRODYAGA1	MuDR	DNA	485	short	251	high	8489401	chromoarm	1294	no-CHH	no-CHH	.	.	.	.	.
Chr2	12131049	12131463	AT2TE52840	.	+	ATREP19	.	DNA	414	short	189	medium	8497626	chromoarm	628	no-CHH	no-CHH	.	.	.	.	.
Chr2	12138752	12139015	AT2TE52880	.	-	ATTIRTA1	Tc1	DNA	263	short	95	medium	8505329	chromoarm	820	no-CHH	no-CHH	.	.	.	.	.
Chr2	12143688	12144801	AT2TE52900	.	+	ATREP9	Helitron	RC	1114	short	201	high	8510264	chromoarm	312	.	.	.	.	.	.	.
Chr2	12144801	12144976	AT2TE52905	.	+	HELITRONY3	Helitron	RC	175	short	1399	high	8511378	chromoarm	1426	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	12149432	12150234	AT2TE52920	.	+	ATREP15	Helitron	RC	802	short	1003	high	8516009	chromoarm	145	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	12180681	12180935	AT2TE53070	.	+	VANDAL17	MuDR	DNA	254	short	178	medium	8547258	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	12182186	12182543	AT2TE53075	.	-	ATMUNX1	MuDR	DNA	357	short	155	medium	8548763	chromoarm	1203	no-CHH	no-CHH	.	.	.	.	.
Chr2	12182545	12182646	AT2TE53080	.	-	ATDNA2T9C	MuDR	DNA	101	short	242	high	8549122	chromoarm	1562	no-RdDM	no-CHH	.	.	.	.	.
Chr2	12197877	12199092	AT2TE53160	.	+	HELITRONY3	Helitron	RC	1215	short	1399	high	8564454	chromoarm	290	no-CHH	no-CHH	.	.	.	.	.
Chr2	12200820	12201835	AT2TE53165	.	+	HELITRONY1E	Helitron	RC	1015	short	447	high	8567397	chromoarm	193	no-CHH	no-CHH	.	.	.	.	.
Chr2	12202932	12203312	AT2TE53170	.	-	ATREP7	Helitron	RC	380	short	164	medium	8569509	chromoarm	2305	no-CHH	no-CHH	.	.	.	.	.
Chr2	12208182	12209078	AT2TE53190	.	-	ATREP5	Helitron	RC	896	short	624	high	8574759	chromoarm	947	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	12209078	12209264	AT2TE53195	.	-	ATREP1	Helitron	RC	186	short	498	high	8575655	chromoarm	761	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	12209272	12209729	AT2TE53200	.	-	TNAT1A	.	DNA	457	short	162	medium	8575849	chromoarm	296	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	12209729	12209840	AT2TE53205	.	+	ATREP5	Helitron	RC	111	short	624	high	8576306	chromoarm	185	no-CHH	no-CHH	.	.	.	.	.
Chr2	12231411	12231765	AT2TE53310	.	+	ATREP5	Helitron	RC	354	short	624	high	8597988	chromoarm	3160	no-CHH	no-CHH	.	.	.	.	.
Chr2	12239277	12239716	AT2TE53350	.	-	BRODYAGA2	MuDR	DNA	439	short	525	high	8605854	chromoarm	191	no-CHH	no-CHH	.	.	.	.	.
Chr2	12244907	12245010	AT2TE53380	.	+	HELITRONY1D	Helitron	RC	103	short	756	high	8611484	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	12245010	12246475	AT2TE53385	.	-	ATREP10D	Helitron	RC	1465	short	1295	high	8611587	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	12249619	12249735	AT2TE53395	.	-	LIMPET1	MuDR	DNA	116	short	116	medium	8616196	chromoarm	99	no-CHH	no-CHH	.	.	.	.	.
Chr2	12257704	12258137	AT2TE53430	.	-	ATREP5	Helitron	RC	433	short	624	high	8624281	chromoarm	2015	no-CHH	no-CHH	.	.	.	.	.
Chr2	12281074	12281170	AT2TE53550	.	-	HELITRONY3	Helitron	RC	96	tiny	1399	high	8647651	chromoarm	3454	no-CHH	no-CHH	.	.	.	.	.
Chr2	12281170	12282129	AT2TE53555	.	+	ATREP19	.	DNA	959	short	189	medium	8647747	chromoarm	2495	no-CHH	no-CHH	.	.	.	.	.
Chr2	12282129	12282600	AT2TE53560	.	-	HELITRONY3	Helitron	RC	471	short	1399	high	8648706	chromoarm	2024	no-CHH	no-CHH	.	.	.	.	.
Chr2	12282600	12283535	AT2TE53565	.	-	ATREP19	.	DNA	935	short	189	medium	8649177	chromoarm	1089	no-CHH	no-CHH	.	.	.	.	.
Chr2	12297113	12297205	AT2TE53630	.	+	ATDNA12T3_2	.	DNA	92	tiny	660	high	8663690	chromoarm	169	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	12297248	12297697	AT2TE53635	.	-	ATHILA8B	Gypsy	LTR	449	short	78	medium	8663825	chromoarm	304	no-CHH	no-CHH	.	.	.	.	.
Chr2	12297884	12298553	AT2TE53640	.	-	ATREP9	Helitron	RC	669	short	201	high	8664461	chromoarm	940	no-CHH	no-CHH	.	.	.	.	.
Chr2	12302490	12302982	AT2TE53650	.	+	HELITRONY3	Helitron	RC	492	short	1399	high	8669067	chromoarm	135	no-CHH	no-CHH	.	.	.	.	.
Chr2	12315576	12316185	AT2TE53710	.	-	HELITRON2	Helitron	RC	609	short	194	medium	8682153	chromoarm	1198	no-CHH	no-CHH	.	.	.	.	.
Chr2	12316185	12316272	AT2TE53715	.	+	ATDNA12T3_2	.	DNA	87	tiny	660	high	8682762	chromoarm	1111	no-CHH	no-CHH	.	.	.	.	.
Chr2	12320221	12320534	AT2TE53730	.	+	ATREP4	Helitron	RC	313	short	832	high	8686798	chromoarm	1497	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	12320534	12320798	AT2TE53735	.	+	DT1	Mariner	DNA	264	short	123	medium	8687111	chromoarm	1810	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	12320798	12320899	AT2TE53740	.	-	ATREP1	Helitron	RC	101	short	498	high	8687375	chromoarm	2074	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	12331673	12332810	AT2TE53790	.	+	ATLINE1_4	L1	LINE	1137	short	102	medium	8698250	chromoarm	1361	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	12344695	12346695	AT2TE53850	.	+	ATREP4	Helitron	RC	2000	medium	832	high	8711272	chromoarm	1414	no-CHH	no-CHH	.	.	.	.	.
Chr2	12346695	12346868	AT2TE53855	.	+	ATREP15	Helitron	RC	173	short	1003	high	8713272	chromoarm	3414	no-CHH	no-CHH	.	.	.	.	.
Chr2	12351902	12352282	AT2TE53880	.	+	ATREP5	Helitron	RC	380	short	624	high	8718479	chromoarm	2381	no-CHH	no-CHH	.	.	.	.	.
Chr2	12375013	12375478	AT2TE54000	.	+	ATREP7	Helitron	RC	465	short	164	medium	8741590	chromoarm	3063	no-CHH	no-CHH	.	.	.	.	.
Chr2	12375478	12375519	AT2TE54005	.	-	HELITRONY1D	Helitron	RC	41	tiny	756	high	8742055	chromoarm	3022	no-CHH	no-CHH	.	.	.	.	.
Chr2	12386028	12386168	AT2TE54050	.	+	ATLINE1_6	L1	LINE	140	short	129	medium	8752605	chromoarm	1067	no-CHH	no-CHH	.	.	.	.	.
Chr2	12390982	12391657	AT2TE54070	.	+	HELITRONY1E	Helitron	RC	675	short	447	high	8757559	chromoarm	1159	no-CHH	no-CHH	.	.	.	.	.
Chr2	12391657	12391697	AT2TE54075	.	+	HELITRONY1E	Helitron	RC	40	tiny	447	high	8758234	chromoarm	1834	no-CHH	no-CHH	.	.	.	.	.
Chr2	12403517	12403544	AT2TE54130	.	-	BRODYAGA2	MuDR	DNA	27	tiny	525	high	8770094	chromoarm	409	no-CHH	no-CHH	.	.	.	.	.
Chr2	12403544	12404090	AT2TE54135	.	-	ATREP11	Helitron	RC	546	short	841	high	8770121	chromoarm	436	no-CHH	no-CHH	.	.	.	.	.
Chr2	12408530	12408580	AT2TE54150	.	-	META1	Copia	LTR	50	tiny	138	medium	8775107	chromoarm	468	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	12408580	12408638	AT2TE54155	.	+	BRODYAGA1	MuDR	DNA	58	tiny	251	high	8775157	chromoarm	518	no-CHH	no-CHH	.	.	.	.	.
Chr2	12408638	12409125	AT2TE54160	.	+	ATREP9	Helitron	RC	487	short	201	high	8775215	chromoarm	576	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	12409125	12409373	AT2TE54165	.	-	META1	Copia	LTR	248	short	138	medium	8775702	chromoarm	1063	no-CHH	no-CHH	.	.	.	.	.
Chr2	12413544	12413694	AT2TE54180	.	+	BRODYAGA1	MuDR	DNA	150	short	251	high	8780121	chromoarm	728	no-CHH	RDR6-RdDM	.	.	.	.	.
Chr2	12413694	12413986	AT2TE54185	.	-	ATMU10	MuDR	DNA	292	short	87	medium	8780271	chromoarm	436	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	12414021	12414053	AT2TE54190	.	-	ATMU7	MuDR	DNA	32	tiny	32	low	8780598	chromoarm	369	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	12416116	12416590	AT2TE54200	.	-	ATMU10	MuDR	DNA	474	short	87	medium	8782693	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	12418578	12418624	AT2TE54210	.	+	HELITRONY2	Helitron	RC	46	tiny	198	medium	8785155	chromoarm	124	no-CHH	no-CHH	.	.	.	.	.
Chr2	12418624	12419006	AT2TE54215	.	+	BRODYAGA2	MuDR	DNA	382	short	525	high	8785201	chromoarm	170	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	12423751	12423793	AT2TE54230	.	-	BRODYAGA1	MuDR	DNA	42	tiny	251	high	8790328	chromoarm	1163	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	12423793	12424238	AT2TE54235	.	+	BRODYAGA2	MuDR	DNA	445	short	525	high	8790370	chromoarm	718	no-CHH	no-CHH	.	.	.	.	.
Chr2	12449212	12454227	AT2TE54360	.	-	ATLINEIII	L1	LINE	5015	long	196	medium	8815789	chromoarm	827	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	12454227	12454443	AT2TE54365	.	-	ATLINE2	L1	LINE	216	short	138	medium	8820804	chromoarm	611	no-RdDM	no-CHH	.	.	.	.	.
Chr2	12475702	12475916	AT2TE54470	.	-	ATDNA12T3_2	.	DNA	214	short	660	high	8842279	chromoarm	455	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	12480191	12480252	AT2TE54490	.	-	ATREP19	.	DNA	61	tiny	189	medium	8846768	chromoarm	70	no-CHH	no-CHH	.	.	.	.	.
Chr2	12480252	12480644	AT2TE54495	.	-	ARNOLD3	MuDR	DNA	392	short	45	low	8846829	chromoarm	131	no-CHH	no-CHH	.	.	.	.	.
Chr2	12480644	12480759	AT2TE54500	.	-	ATREP11	Helitron	RC	115	short	841	high	8847221	chromoarm	523	no-CHH	no-CHH	.	.	.	.	.
Chr2	12480759	12481186	AT2TE54505	.	+	ATDNA2T9C	MuDR	DNA	427	short	242	high	8847336	chromoarm	638	no-CHH	no-CHH	.	.	.	.	.
Chr2	12504889	12505834	AT2TE54620	.	-	ATREP15	Helitron	RC	945	short	1003	high	8871466	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	12505834	12506034	AT2TE54625	.	-	HELITRONY3	Helitron	RC	200	short	1399	high	8872411	chromoarm	845	no-CHH	no-CHH	.	.	.	.	.
Chr2	12520675	12520837	AT2TE54690	.	+	ATREP4	Helitron	RC	162	short	832	high	8887252	chromoarm	2634	no-CHH	no-CHH	.	.	.	.	.
Chr2	12520837	12521667	AT2TE54695	.	+	ATREP11	Helitron	RC	830	short	841	high	8887414	chromoarm	1804	no-CHH	no-CHH	.	.	.	.	.
Chr2	12527890	12528214	AT2TE54720	.	-	HELITRONY3	Helitron	RC	324	short	1399	high	8894467	chromoarm	191	no-CHH	no-CHH	.	.	.	.	.
Chr2	12528214	12528560	AT2TE54725	.	-	HELITRONY1D	Helitron	RC	346	short	756	high	8894791	chromoarm	515	no-CHH	no-CHH	.	.	.	.	.
Chr2	12539440	12541817	AT2TE54780	.	-	ATCOPIA63	Copia	LTR	2377	medium	11	low	8906017	chromoarm	46	no-RdDM	no-CHH	.	.	.	.	.
Chr2	12554403	12554585	AT2TE54840	.	+	ATHATN7	HAT	DNA	182	short	71	medium	8920980	chromoarm	1218	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	12554585	12556266	AT2TE54845	.	-	ATREP3	Helitron	RC	1681	short	1439	high	8921162	chromoarm	1400	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	12556266	12556550	AT2TE54850	.	-	ATREP3	Helitron	RC	284	short	1439	high	8922843	chromoarm	1605	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	12556550	12556640	AT2TE54855	.	+	ATREP2A	Helitron	RC	90	tiny	116	medium	8923127	chromoarm	1515	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	12556655	12557227	AT2TE54860	.	+	ATREP2	Helitron	RC	572	short	164	medium	8923232	chromoarm	928	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	12557227	12557276	AT2TE54865	.	+	ATREP2A	Helitron	RC	49	tiny	116	medium	8923804	chromoarm	879	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	12566155	12578422	AT2TE54910	.	+	VANDAL14	MuDR	DNA	12268	long	25	low	8932731	chromoarm	486	.	.	LowExpressed	.	.	.	.
Chr2	12581361	12581966	AT2TE54920	.	+	HELITRONY1D	Helitron	RC	605	short	756	high	8947938	chromoarm	556	no-CHH	no-CHH	.	.	.	.	.
Chr2	12603025	12603109	AT2TE55030	.	-	RathE1_cons	.	RathE1_cons	84	tiny	213	high	8969602	chromoarm	739	no-CHH	no-CHH	.	.	.	.	.
Chr2	12622296	12622875	AT2TE55130	.	+	ATREP9	Helitron	RC	579	short	201	high	8988873	chromoarm	1197	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	12623735	12624386	AT2TE55135	.	-	ATREP4	Helitron	RC	651	short	832	high	8990312	chromoarm	387	no-CHH	no-CHH	.	.	.	.	.
Chr2	12693395	12693640	AT2TE55480	.	+	ARNOLDY2	MuDR	DNA	245	short	288	high	9059972	chromoarm	258	no-CHH	no-CHH	.	.	.	.	.
Chr2	12701345	12701473	AT2TE55520	.	-	TAG2	HAT	DNA	128	short	86	medium	9067922	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	12702596	12702960	AT2TE55525	.	+	HELITRONY1D	Helitron	RC	364	short	756	high	9069173	chromoarm	307	no-CHH	no-CHH	.	.	.	.	.
Chr2	12702634	12702929	AT2TE55530	.	+	ATTIRX1C	.	DNA	295	short	39	low	9069211	chromoarm	345	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	12708688	12708738	AT2TE55560	.	+	ATTIR16T3A	.	DNA	51	tiny	106	medium	9075264	chromoarm	516	.	.	.	.	.	.	.
Chr2	12708738	12709220	AT2TE55565	.	+	ATTIR16T3A	.	DNA	482	short	106	medium	9075315	chromoarm	567	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	12713127	12713170	AT2TE55575	.	+	ATHILA7	Gypsy	LTR	43	tiny	134	medium	9079704	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	12719456	12720796	AT2TE55600	.	+	ATREP10D	Helitron	RC	1340	short	1295	high	9086033	chromoarm	128	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	12720796	12720819	AT2TE55605	.	+	META1	Copia	LTR	23	tiny	138	medium	9087373	chromoarm	165	no-CHH	no-CHH	.	.	.	.	.
Chr2	12720819	12720861	AT2TE55610	.	-	ATREP15	Helitron	RC	42	tiny	1003	high	9087396	chromoarm	123	no-CHH	no-CHH	.	.	.	.	.
Chr2	12724686	12725201	AT2TE55620	.	-	HELITRONY3	Helitron	RC	515	short	1399	high	9091263	chromoarm	84	no-CHH	no-CHH	.	.	.	.	.
Chr2	12725303	12725574	AT2TE55625	.	-	RP1_AT	.	DNA	271	short	87	medium	9091880	chromoarm	527	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	12733207	12733388	AT2TE55660	.	+	ATCOPIA13	Copia	LTR	181	short	35	low	9099784	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	12738686	12740291	AT2TE55690	.	-	ATDNA2T9A	MuDR	DNA	1605	short	48	low	9105263	chromoarm	298	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	12740295	12740339	AT2TE55695	.	-	ATDNA2T9C	MuDR	DNA	44	tiny	242	high	9106872	chromoarm	852	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	12740682	12740923	AT2TE55700	.	+	ATTIRX1C	.	DNA	241	short	39	low	9107259	chromoarm	268	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	12755360	12755804	AT2TE55770	.	+	ATDNA2T9C	MuDR	DNA	444	short	242	high	9121937	chromoarm	0	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	12773883	12774328	AT2TE55860	.	-	TA11	L1	LINE	445	short	157	medium	9140460	chromoarm	2272	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	12784951	12785025	AT2TE55910	.	+	ATCOPIA68	Copia	LTR	74	tiny	43	low	9151528	chromoarm	5	no-CHH	no-CHH	.	.	.	.	.
Chr2	12788246	12788565	AT2TE55920	.	+	ATHPOGON3	Pogo	DNA	319	short	118	medium	9154823	chromoarm	3300	no-CHH	no-CHH	.	.	.	.	.
Chr2	12798328	12798861	AT2TE55970	.	+	ATREP1	Helitron	RC	533	short	498	high	9164905	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	12800153	12800218	AT2TE55975	.	-	HELITRONY1E	Helitron	RC	65	tiny	447	high	9166730	chromoarm	810	no-CHH	no-CHH	.	.	.	.	.
Chr2	12800221	12803322	AT2TE55980	.	+	ATREP3	Helitron	RC	3101	medium	1439	high	9166798	chromoarm	719	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	12803322	12803600	AT2TE55985	.	+	HELITRONY3	Helitron	RC	278	short	1399	high	9169899	chromoarm	441	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	12811690	12811914	AT2TE56020	.	-	ATDNAI27T9C	MuDR	DNA	224	short	108	medium	9178267	chromoarm	2464	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	12812062	12812737	AT2TE56025	.	-	LIMPET1	MuDR	DNA	675	short	116	medium	9178639	chromoarm	1699	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	12812737	12812764	AT2TE56030	.	-	LIMPET1	MuDR	DNA	27	tiny	116	medium	9179314	chromoarm	1672	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	12812786	12813045	AT2TE56035	.	-	ATDNA1T9A	MuDR	DNA	259	short	36	low	9179363	chromoarm	1391	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	12814547	12814949	AT2TE56040	.	+	VANDAL5A	MuDR	DNA	402	short	56	medium	9181124	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	12832906	12833204	AT2TE56130	.	+	ATREP4	Helitron	RC	298	short	832	high	9199483	chromoarm	1892	no-CHH	no-CHH	.	.	.	.	.
Chr2	12833204	12834104	AT2TE56135	.	-	ATREP7	Helitron	RC	900	short	164	medium	9199781	chromoarm	992	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	12834104	12834135	AT2TE56140	.	-	ATHPOGON1	Pogo	DNA	31	tiny	174	medium	9200681	chromoarm	961	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	12834135	12834835	AT2TE56145	.	+	META1	Copia	LTR	700	short	138	medium	9200712	chromoarm	261	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr2	12845597	12845680	AT2TE56190	.	-	ATCOPIA59	Copia	LTR	83	tiny	20	low	9212174	chromoarm	0	no-CHH	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	12845698	12846134	AT2TE56195	.	-	ATREP10D	Helitron	RC	436	short	1295	high	9212275	chromoarm	101	no-CHH	no-CHH	.	.	.	.	.
Chr2	12857782	12858318	AT2TE56250	.	-	ATTIR16T3A	.	DNA	536	short	106	medium	9224359	chromoarm	413	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	12858318	12858464	AT2TE56255	.	+	BRODYAGA2	MuDR	DNA	146	short	525	high	9224895	chromoarm	949	no-CHH	no-CHH	.	.	.	.	.
Chr2	12858464	12858612	AT2TE56260	.	-	ATREP7	Helitron	RC	148	short	164	medium	9225041	chromoarm	1095	no-CHH	no-CHH	.	.	.	.	.
Chr2	12862093	12862772	AT2TE56270	.	-	ATREP1	Helitron	RC	679	short	498	high	9228670	chromoarm	231	no-CHH	no-CHH	.	.	.	.	.
Chr2	12862779	12862834	AT2TE56275	.	+	ATREP4	Helitron	RC	55	tiny	832	high	9229356	chromoarm	917	no-CHH	no-CHH	.	.	.	.	.
Chr2	12876124	12877655	AT2TE56340	.	-	ATREP4	Helitron	RC	1531	short	832	high	9242701	chromoarm	2	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	12877655	12877808	AT2TE56345	.	+	HELITRONY1E	Helitron	RC	153	short	447	high	9244232	chromoarm	207	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	12893035	12893160	AT2TE56420	.	-	ATLINE1_4	L1	LINE	125	short	102	medium	9259612	chromoarm	498	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	12896376	12896947	AT2TE56430	.	-	BRODYAGA2	MuDR	DNA	571	short	525	high	9262953	chromoarm	208	no-CHH	no-CHH	.	.	.	.	.
Chr2	12916893	12918302	AT2TE56530	.	-	HELITRONY3	Helitron	RC	1409	short	1399	high	9283470	chromoarm	1098	no-CHH	no-CHH	.	.	.	.	.
Chr2	12958337	12959277	AT2TE56730	.	+	ATREP7	Helitron	RC	940	short	164	medium	9324914	chromoarm	534	no-CHH	no-CHH	.	.	.	.	.
Chr2	12968843	12968865	AT2TE56780	.	+	ATREP11	Helitron	RC	22	tiny	841	high	9335420	chromoarm	0	no-CHH	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	12968865	12968885	AT2TE56785	.	+	ATREP10D	Helitron	RC	20	tiny	1295	high	9335442	chromoarm	0	no-CHH	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	12968885	12969756	AT2TE56790	.	+	ATREP5	Helitron	RC	871	short	624	high	9335462	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	12979058	12979088	AT2TE56840	.	-	ATREP10A	Helitron	RC	30	tiny	279	high	9345635	chromoarm	569	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	12979088	12980532	AT2TE56845	.	-	ATREP5	Helitron	RC	1444	short	624	high	9345665	chromoarm	371	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	12980532	12980582	AT2TE56850	.	-	ATHPOGON3	Pogo	DNA	50	tiny	118	medium	9347109	chromoarm	321	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr2	12980582	12980656	AT2TE56855	.	+	ATREP5	Helitron	RC	74	tiny	624	high	9347159	chromoarm	247	no-CHH	no-CHH	.	.	.	.	.
Chr2	12985211	12985618	AT2TE56870	.	+	BRODYAGA2	MuDR	DNA	407	short	525	high	9351788	chromoarm	487	no-CHH	no-CHH	.	.	.	.	.
Chr2	13024830	13025838	AT2TE57070	.	-	ATREP10D	Helitron	RC	1008	short	1295	high	9391407	chromoarm	605	no-CHH	no-CHH	.	.	.	.	.
Chr2	13026005	13026281	AT2TE57075	.	+	VANDAL17	MuDR	DNA	276	short	178	medium	9392582	chromoarm	162	no-CHH	no-CHH	.	.	.	.	.
Chr2	13034272	13034423	AT2TE57110	.	+	ATRE1	Copia	LTR	151	short	22	low	9400849	chromoarm	0	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	13035913	13036722	AT2TE57115	.	+	ATREP5	Helitron	RC	809	short	624	high	9402490	chromoarm	610	no-CHH	no-CHH	.	.	.	.	.
Chr2	13043473	13044590	AT2TE57140	.	-	ATREP3	Helitron	RC	1117	short	1439	high	9410050	chromoarm	769	no-CHH	no-CHH	.	.	.	.	.
Chr2	13049508	13051773	AT2TE57160	.	-	Unassigned	.	Unassigned	2265	medium	.	low	9416085	chromoarm	402	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	13064169	13064196	AT2TE57220	.	+	ATREP15	Helitron	RC	27	tiny	1003	high	9430746	chromoarm	2504	no-CHH	no-CHH	.	.	.	.	.
Chr2	13064196	13064500	AT2TE57225	.	-	ATREP15	Helitron	RC	304	short	1003	high	9430773	chromoarm	2531	no-CHH	no-CHH	.	.	.	.	.
Chr2	13064500	13068100	AT2TE57230	.	+	HELITRONY3	Helitron	RC	3600	medium	1399	high	9431077	chromoarm	1212	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	13065405	13065742	AT2TE57235	.	-	ATREP4	Helitron	RC	337	short	832	high	9431982	chromoarm	3570	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	13065742	13065919	AT2TE57240	.	-	ATREP5	Helitron	RC	177	short	624	high	9432319	chromoarm	3393	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	13068100	13068391	AT2TE57250	.	+	HELITRONY3	Helitron	RC	291	short	1399	high	9434677	chromoarm	921	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	13068391	13068563	AT2TE57255	.	+	HELITRONY3	Helitron	RC	172	short	1399	high	9434968	chromoarm	749	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	13068563	13068609	AT2TE57260	.	-	HELITRONY2	Helitron	RC	46	tiny	198	medium	9435140	chromoarm	703	no-CHH	no-CHH	.	.	.	.	.
Chr2	13071023	13071450	AT2TE57270	.	-	ATREP1	Helitron	RC	427	short	498	high	9437600	chromoarm	119	no-CHH	no-CHH	.	.	.	.	.
Chr2	13071450	13072178	AT2TE57275	.	+	AT9TSD1	MuDR	DNA	728	short	55	medium	9438027	chromoarm	546	no-CHH	no-CHH	.	.	.	.	.
Chr2	13072178	13072240	AT2TE57280	.	-	HELITRONY1D	Helitron	RC	62	tiny	756	high	9438755	chromoarm	1274	no-CHH	no-CHH	.	.	.	.	.
Chr2	13091666	13092382	AT2TE57380	.	+	ATREP3	Helitron	RC	716	short	1439	high	9458243	chromoarm	128	no-CHH	no-CHH	.	.	.	.	.
Chr2	13095115	13095389	AT2TE57390	.	+	VANDAL17	MuDR	DNA	274	short	178	medium	9461692	chromoarm	438	no-CHH	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	13095390	13095418	AT2TE57395	.	-	ATDNAI27T9C	MuDR	DNA	29	tiny	108	medium	9461966	chromoarm	712	.	.	LowExpressed	.	.	.	.
Chr2	13099081	13099488	AT2TE57405	.	+	VANDAL8	MuDR	DNA	407	short	123	medium	9465658	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	13101544	13101677	AT2TE57415	.	+	HELITRONY1E	Helitron	RC	133	short	447	high	9468121	chromoarm	155	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	13101677	13102359	AT2TE57420	.	+	ATREP2	Helitron	RC	682	short	164	medium	9468254	chromoarm	288	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	13102359	13102812	AT2TE57425	.	-	ATREP4	Helitron	RC	453	short	832	high	9468936	chromoarm	970	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	13102812	13104091	AT2TE57430	.	-	HELITRONY3	Helitron	RC	1279	short	1399	high	9469389	chromoarm	1423	no-CHH	no-CHH	.	.	.	.	.
Chr2	13109478	13109859	AT2TE57460	.	-	BRODYAGA1A	MuDR	DNA	381	short	586	high	9476055	chromoarm	49	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	13109859	13109907	AT2TE57465	.	+	ATREP11	Helitron	RC	48	tiny	841	high	9476436	chromoarm	1	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	13112227	13112344	AT2TE57475	.	-	HELITRONY3	Helitron	RC	117	short	1399	high	9478804	chromoarm	221	no-CHH	no-CHH	.	.	.	.	.
Chr2	13112344	13113265	AT2TE57480	.	+	ATREP3	Helitron	RC	921	short	1439	high	9478921	chromoarm	338	no-CHH	no-CHH	.	.	.	.	.
Chr2	13113265	13113911	AT2TE57485	.	-	ATREP1	Helitron	RC	646	short	498	high	9479842	chromoarm	1259	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	13113911	13113938	AT2TE57490	.	-	ATHPOGON1	Pogo	DNA	27	tiny	174	medium	9480488	chromoarm	1905	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	13113938	13113969	AT2TE57495	.	-	AT9TSD1	MuDR	DNA	31	tiny	55	medium	9480515	chromoarm	1932	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	13128118	13129368	AT2TE57560	.	+	ATREP11	Helitron	RC	1250	short	841	high	9494695	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	13135349	13135448	AT2TE57590	.	-	ATGP10	Gypsy	LTR	99	tiny	165	medium	9501926	chromoarm	132	no-CHH	no-CHH	.	.	.	.	.
Chr2	13137576	13137956	AT2TE57600	.	-	ATREP6	Helitron	RC	380	short	181	medium	9504153	chromoarm	743	no-CHH	no-CHH	.	.	.	.	.
Chr2	13172141	13172395	AT2TE57770	.	+	ATIS112A	Harbinger	DNA	254	short	173	medium	9538718	chromoarm	306	no-CHH	no-CHH	.	.	.	.	.
Chr2	13173886	13174079	AT2TE57775	.	+	ATIS112A	Harbinger	DNA	193	short	173	medium	9540463	chromoarm	612	no-CHH	no-CHH	.	.	.	.	.
Chr2	13177889	13178216	AT2TE57785	.	+	ATENSPM1A	En-Spm	DNA	327	short	77	medium	9544466	chromoarm	0	no-CHH	no-CHH	ExpressedAndAnnotated	13178332,13178332,13178332	13177219,13177282,13177944	-,-,-	transcript_id-"318739bf-712f-454d-a961-3a4ae3a3b568|27",transcript_id-"1fa97ca5-bd98-415f-af26-4ae7d0875a33|5",transcript_id-"9a00d085-a816-4bd6-80f5-8998d231b7bc|4"
Chr2	13185546	13185728	AT2TE57820	.	-	HARBINGER	Harbinger	DNA	182	short	90	medium	9552123	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	13190280	13190398	AT2TE57840	.	+	ATDNAI27T9C	MuDR	DNA	118	short	108	medium	9556857	chromoarm	519	no-CHH	no-CHH	.	.	.	.	.
Chr2	13204880	13205638	AT2TE57910	.	+	ATREP10D	Helitron	RC	758	short	1295	high	9571457	chromoarm	198	no-CHH	no-CHH	.	.	.	.	.
Chr2	13211085	13211354	AT2TE57940	.	+	ATREP15	Helitron	RC	269	short	1003	high	9577662	chromoarm	73	no-CHH	no-CHH	.	.	.	.	.
Chr2	13211354	13211592	AT2TE57945	.	+	ATDNATA1	Mariner	DNA	238	short	28	low	9577931	chromoarm	342	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	13211592	13211629	AT2TE57950	.	-	ATHPOGON1	Pogo	DNA	37	tiny	174	medium	9578169	chromoarm	520	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	13211629	13211996	AT2TE57955	.	-	ATREP19	.	DNA	367	short	189	medium	9578206	chromoarm	153	no-CHH	no-CHH	.	.	.	.	.
Chr2	13211996	13212081	AT2TE57960	.	+	HELITRONY1C	Helitron	RC	85	tiny	120	medium	9578573	chromoarm	68	no-CHH	no-CHH	.	.	.	.	.
Chr2	13219027	13219292	AT2TE58000	.	+	ATCOPIA1	Copia	LTR	265	short	11	low	9585604	chromoarm	483	no-CHH	no-CHH	.	.	.	.	.
Chr2	13223058	13227048	AT2TE58010	.	-	Unassigned	.	Unassigned	3990	medium	.	low	9589635	chromoarm	989	no-RdDM	no-RdDM	ExpressedAndAnnotated	13223460	13223061	-	transcript_id-"be908156-f313-4f17-b788-c13ba734ba71|4"
Chr2	13228093	13228207	AT2TE58015	.	-	TSCL	.	LINE?	114	short	81	medium	9594670	chromoarm	6024	no-CHH	no-CHH	.	.	.	.	.
Chr2	13229164	13229985	AT2TE58020	.	-	BRODYAGA2	MuDR	DNA	821	short	525	high	9595741	chromoarm	7095	no-CHH	no-CHH	.	.	.	.	.
Chr2	13234085	13234262	AT2TE58040	.	+	ATHATN3	HAT	DNA	177	short	70	medium	9600662	chromoarm	3840	no-CHH	no-CHH	.	.	.	.	.
Chr2	13237346	13237529	AT2TE58050	.	-	ATCOPIA12	Copia	LTR	183	short	15	low	9603923	chromoarm	573	no-CHH	no-CHH	.	.	.	.	.
Chr2	13245078	13245119	AT2TE58090	.	-	ATREP3	Helitron	RC	41	tiny	1439	high	9611655	chromoarm	3378	no-CHH	no-CHH	.	.	.	.	.
Chr2	13245119	13245752	AT2TE58095	.	+	HELITRONY1B	Helitron	RC	633	short	414	high	9611696	chromoarm	3419	no-CHH	no-CHH	.	.	.	.	.
Chr2	13245752	13245785	AT2TE58100	.	-	ATREP3	Helitron	RC	33	tiny	1439	high	9612329	chromoarm	4052	no-CHH	no-CHH	.	.	.	.	.
Chr2	13250209	13251646	AT2TE58120	.	-	ATREP4	Helitron	RC	1437	short	832	high	9616786	chromoarm	657	no-CHH	no-CHH	.	.	.	.	.
Chr2	13252942	13252994	AT2TE58125	.	+	ATHPOGO	Pogo	DNA	52	tiny	25	low	9619519	chromoarm	393	no-CHH	no-CHH	.	.	.	.	.
Chr2	13252994	13254034	AT2TE58130	.	+	HELITRONY3	Helitron	RC	1040	short	1399	high	9619571	chromoarm	228	no-CHH	no-CHH	.	.	.	.	.
Chr2	13266674	13266894	AT2TE58190	.	+	HELITRON2	Helitron	RC	220	short	194	medium	9633251	chromoarm	1140	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	13266894	13266915	AT2TE58195	.	+	ATREP3	Helitron	RC	21	tiny	1439	high	9633471	chromoarm	1360	PolIV-and-RDR6-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	13266915	13269004	AT2TE58200	.	+	ATREP3	Helitron	RC	2089	medium	1439	high	9633492	chromoarm	1083	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	13269004	13269151	AT2TE58205	.	-	ATREP11	Helitron	RC	147	short	841	high	9635581	chromoarm	936	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	13269151	13269613	AT2TE58210	.	-	HELITRONY1B	Helitron	RC	462	short	414	high	9635728	chromoarm	474	no-CHH	no-CHH	.	.	.	.	.
Chr2	13269613	13269639	AT2TE58215	.	-	HELITRONY1D	Helitron	RC	26	tiny	756	high	9636190	chromoarm	448	no-CHH	no-CHH	.	.	.	.	.
Chr2	13305545	13305682	AT2TE58390	.	+	TSCL	.	LINE?	137	short	81	medium	9672122	chromoarm	884	no-CHH	no-CHH	.	.	.	.	.
Chr2	13313268	13313416	AT2TE58430	.	-	ATLINE1_3A	L1	LINE	148	short	160	medium	9679845	chromoarm	4153	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	13327617	13327895	AT2TE58500	.	-	HELITRONY1D	Helitron	RC	278	short	756	high	9694194	chromoarm	1141	no-CHH	no-CHH	.	.	.	.	.
Chr2	13327895	13328761	AT2TE58505	.	+	ATREP15	Helitron	RC	866	short	1003	high	9694472	chromoarm	275	no-CHH	no-CHH	.	.	.	.	.
Chr2	13334471	13338272	AT2TE58530	.	-	ATREP3	Helitron	RC	3801	medium	1439	high	9701048	chromoarm	1405	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	13338272	13338506	AT2TE58535	.	-	META1	Copia	LTR	234	short	138	medium	9704849	chromoarm	1171	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	13338506	13338668	AT2TE58540	.	-	ATLINE2	L1	LINE	162	short	138	medium	9705083	chromoarm	1009	no-CHH	no-CHH	.	.	.	.	.
Chr2	13374540	13375293	AT2TE58720	.	+	ATREP16	MuDR	DNA	754	short	47	low	9741116	chromoarm	993	.	.	.	.	.	.	.
Chr2	13378113	13378818	AT2TE58730	.	+	HELITRONY1C	Helitron	RC	705	short	120	medium	9744690	chromoarm	629	no-CHH	no-CHH	.	.	.	.	.
Chr2	13394062	13394529	AT2TE58810	.	+	BRODYAGA2	MuDR	DNA	467	short	525	high	9760639	chromoarm	69	no-CHH	no-CHH	.	.	.	.	.
Chr2	13404295	13404567	AT2TE58860	.	-	RP1_AT	.	DNA	272	short	87	medium	9770872	chromoarm	161	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	13411488	13411872	AT2TE58900	.	+	ATDNA2T9C	MuDR	DNA	384	short	242	high	9778065	chromoarm	187	no-CHH	no-CHH	.	.	.	.	.
Chr2	13421585	13421907	AT2TE58950	.	+	ATDNA2T9C	MuDR	DNA	322	short	242	high	9788162	chromoarm	415	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	13421907	13422281	AT2TE58955	.	-	HELITRONY1C	Helitron	RC	374	short	120	medium	9788484	chromoarm	737	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	13423287	13423401	AT2TE58960	.	-	TA11	L1	LINE	114	short	157	medium	9789864	chromoarm	2117	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	13423408	13424721	AT2TE58965	.	-	ATLINE1_4	L1	LINE	1314	short	102	medium	9789984	chromoarm	2237	.	.	.	.	.	.	.
Chr2	13432975	13433227	AT2TE59000	.	-	RP1_AT	.	DNA	252	short	87	medium	9799552	chromoarm	676	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	13480881	13481528	AT2TE59240	.	-	ATHATN2	HAT	DNA	647	short	46	low	9847458	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	13484667	13484948	AT2TE59250	.	-	ATCOPIA54	Copia	LTR	281	short	18	low	9851244	chromoarm	85	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	13500271	13500435	AT2TE59330	.	-	TAT1_ATH	Gypsy	LTR	164	short	87	medium	9866848	chromoarm	401	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	13507811	13508170	AT2TE59370	.	+	BRODYAGA2	MuDR	DNA	359	short	525	high	9874388	chromoarm	322	no-CHH	no-CHH	.	.	.	.	.
Chr2	13510928	13511194	AT2TE59380	.	+	ATTIRTA1	Tc1	DNA	266	short	95	medium	9877505	chromoarm	384	no-CHH	no-CHH	.	.	.	.	.
Chr2	13513893	13514781	AT2TE59390	.	-	HELITRONY1D	Helitron	RC	888	short	756	high	9880470	chromoarm	343	no-CHH	no-CHH	.	.	.	.	.
Chr2	13530653	13530779	AT2TE59470	.	-	ATHILA6A	Gypsy	LTR	126	short	247	high	9897230	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	13540596	13540630	AT2TE59520	.	+	ATCOPIA65	Copia	LTR	34	tiny	34	low	9907173	chromoarm	56	no-CHH	no-CHH	.	.	.	.	.
Chr2	13540630	13540985	AT2TE59525	.	+	ATCOPIA65A	Copia	LTR	355	short	9	low	9907207	chromoarm	90	no-CHH	no-CHH	.	.	.	.	.
Chr2	13558697	13559061	AT2TE59610	.	+	ATENSPM6	En-Spm	DNA	364	short	151	medium	9925274	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	13579878	13580470	AT2TE59720	.	-	ATREP3	Helitron	RC	592	short	1439	high	9946455	chromoarm	129	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	13582850	13583376	AT2TE59730	.	+	HELITRONY1D	Helitron	RC	526	short	756	high	9949427	chromoarm	53	no-CHH	no-CHH	.	.	.	.	.
Chr2	13612317	13612862	AT2TE59880	.	-	HELITRONY3	Helitron	RC	545	short	1399	high	9978894	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	13612862	13612948	AT2TE59885	.	+	HELITRONY3	Helitron	RC	86	tiny	1399	high	9979439	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	13624076	13624543	AT2TE59940	.	-	ATCOPIA30	Copia	LTR	467	short	33	low	9990653	chromoarm	800	no-CHH	no-CHH	.	.	.	.	.
Chr2	13632096	13632677	AT2TE59980	.	+	ATREP10D	Helitron	RC	581	short	1295	high	9998673	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	13632677	13632718	AT2TE59985	.	+	ATN9_1	MuDR	DNA	41	tiny	65	medium	9999254	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	13633375	13633541	AT2TE59990	.	+	ATREP10D	Helitron	RC	166	short	1295	high	9999952	chromoarm	134	no-CHH	no-CHH	.	.	.	.	.
Chr2	13633554	13635046	AT2TE59995	.	+	HELITRONY3	Helitron	RC	1492	short	1399	high	10000131	chromoarm	69	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	13655561	13655649	AT2TE60090	.	+	HELITRONY1C	Helitron	RC	88	tiny	120	medium	10022138	chromoarm	64	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	13657523	13657656	AT2TE60095	.	+	ATREP10D	Helitron	RC	133	short	1295	high	10024100	chromoarm	490	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	13661257	13661310	AT2TE60105	.	+	HELITRONY1D	Helitron	RC	54	tiny	756	high	10027833	chromoarm	725	.	.	.	.	.	.	.
Chr2	13661311	13661334	AT2TE60110	.	-	ATHPOGON1	Pogo	DNA	24	tiny	174	medium	10027887	chromoarm	779	.	.	.	.	.	.	.
Chr2	13661335	13662101	AT2TE60115	.	-	ATHPOGON3	Pogo	DNA	767	short	118	medium	10027911	chromoarm	136	.	.	.	.	.	.	.
Chr2	13662101	13662185	AT2TE60120	.	+	ATREP15	Helitron	RC	84	tiny	1003	high	10028678	chromoarm	52	no-CHH	no-CHH	.	.	.	.	.
Chr2	13662185	13662212	AT2TE60125	.	-	ATREP11	Helitron	RC	27	tiny	841	high	10028762	chromoarm	25	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	13675927	13676014	AT2TE60190	.	+	ATENSPM10	En-Spm	DNA	87	tiny	81	medium	10042504	chromoarm	539	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	13691317	13691345	AT2TE60270	.	+	HELITRONY3	Helitron	RC	28	tiny	1399	high	10057894	chromoarm	1987	no-CHH	no-CHH	.	.	.	.	.
Chr2	13691345	13692078	AT2TE60275	.	-	BRODYAGA2	MuDR	DNA	733	short	525	high	10057922	chromoarm	1439	no-CHH	no-CHH	.	.	.	.	.
Chr2	13701514	13701662	AT2TE60320	.	+	HELITRONY1B	Helitron	RC	148	short	414	high	10068091	chromoarm	1273	no-CHH	no-CHH	.	.	.	.	.
Chr2	13701662	13702617	AT2TE60325	.	-	ATREP1	Helitron	RC	955	short	498	high	10068239	chromoarm	1421	no-CHH	no-CHH	.	.	.	.	.
Chr2	13704926	13705027	AT2TE60335	.	+	ATLINE1_3A	L1	LINE	101	short	160	medium	10071503	chromoarm	0	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr2	13709139	13709530	AT2TE60350	.	-	ATREP11	Helitron	RC	391	short	841	high	10075716	chromoarm	158	no-CHH	no-CHH	.	.	.	.	.
Chr2	13710235	13710745	AT2TE60355	.	-	ATCOPIA69	Copia	LTR	510	short	25	low	10076812	chromoarm	268	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	13711888	13712040	AT2TE60360	.	-	ATREP4	Helitron	RC	152	short	832	high	10078465	chromoarm	1169	no-CHH	no-CHH	.	.	.	.	.
Chr2	13712040	13713012	AT2TE60365	.	-	ATREP10D	Helitron	RC	972	short	1295	high	10078617	chromoarm	197	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	13717664	13717940	AT2TE60380	.	-	ATLINEIII	L1	LINE	276	short	196	medium	10084241	chromoarm	758	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	13737022	13737273	AT2TE60480	.	+	ATENSPM1A	En-Spm	DNA	251	short	77	medium	10103599	chromoarm	0	no-CHH	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	13737567	13737135	-	transcript_id-"a00c3320-c326-4ce8-a72a-76da84613c9a|6"
Chr2	13739399	13740811	AT2TE60490	.	-	ATREP10D	Helitron	RC	1412	short	1295	high	10105976	chromoarm	1596	no-CHH	no-CHH	.	.	.	.	.
Chr2	13756986	13757553	AT2TE60570	.	+	HELITRONY3	Helitron	RC	567	short	1399	high	10123563	chromoarm	148	no-CHH	no-CHH	.	.	.	.	.
Chr2	13770456	13771043	AT2TE60640	.	-	ATREP15	Helitron	RC	587	short	1003	high	10137033	chromoarm	582	no-CHH	no-CHH	.	.	.	.	.
Chr2	13771043	13771181	AT2TE60645	.	+	ATREP3	Helitron	RC	138	short	1439	high	10137620	chromoarm	444	no-CHH	no-CHH	.	.	.	.	.
Chr2	13793629	13794625	AT2TE60750	.	+	SIMPLEHAT1	HAT	DNA	996	short	56	medium	10160206	chromoarm	741	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	13814381	13814646	AT2TE60850	.	+	ATDNA2T9C	MuDR	DNA	265	short	242	high	10180958	chromoarm	39	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	13863951	13864344	AT2TE61100	.	+	ATHILA6A	Gypsy	LTR	393	short	247	high	10230528	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	13866198	13866329	AT2TE61105	.	+	BRODYAGA1	MuDR	DNA	131	short	251	high	10232775	chromoarm	905	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	13866334	13866463	AT2TE61110	.	-	ATMU9	MuDR	DNA	129	short	16	low	10232911	chromoarm	771	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	13885789	13885931	AT2TE61210	.	+	ATREP1	Helitron	RC	142	short	498	high	10252366	chromoarm	325	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	13885933	13886495	AT2TE61215	.	+	ATREP2	Helitron	RC	562	short	164	medium	10252510	chromoarm	330	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	13886495	13886836	AT2TE61220	.	+	ATREP3	Helitron	RC	341	short	1439	high	10253072	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	13902631	13902999	AT2TE61300	.	-	ATDNA2T9C	MuDR	DNA	368	short	242	high	10269208	chromoarm	272	no-CHH	no-CHH	.	.	.	.	.
Chr2	13905144	13905428	AT2TE61310	.	+	BRODYAGA1A	MuDR	DNA	284	short	586	high	10271721	chromoarm	34	no-CHH	no-CHH	.	.	.	.	.
Chr2	13906236	13906318	AT2TE61315	.	-	ATREP10D	Helitron	RC	82	tiny	1295	high	10272813	chromoarm	0	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	13906318	13906365	AT2TE61320	.	-	ATREP11A	Helitron	RC	47	tiny	95	medium	10272895	chromoarm	47	no-CHH	no-CHH	.	.	.	.	.
Chr2	13906365	13908806	AT2TE61325	.	-	ATREP3	Helitron	RC	2441	medium	1439	high	10272942	chromoarm	94	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	13908806	13909153	AT2TE61330	.	-	ATREP5	Helitron	RC	347	short	624	high	10275383	chromoarm	2535	no-CHH	no-CHH	.	.	.	.	.
Chr2	13909153	13909209	AT2TE61335	.	+	ATREP10D	Helitron	RC	56	tiny	1295	high	10275730	chromoarm	2882	no-CHH	no-CHH	.	.	.	.	.
Chr2	13951785	13952092	AT2TE61550	.	-	ATREP5	Helitron	RC	307	short	624	high	10318362	chromoarm	169	no-CHH	no-CHH	.	.	.	.	.
Chr2	13957801	13958264	AT2TE61580	.	-	HELITRONY3	Helitron	RC	463	short	1399	high	10324378	chromoarm	184	no-CHH	no-CHH	.	.	.	.	.
Chr2	13969178	13970185	AT2TE61640	.	-	ATREP10D	Helitron	RC	1007	short	1295	high	10335755	chromoarm	759	no-CHH	no-CHH	.	.	.	.	.
Chr2	13984109	13984901	AT2TE61710	.	+	ATREP3	Helitron	RC	792	short	1439	high	10350686	chromoarm	827	no-CHH	no-CHH	.	.	.	.	.
Chr2	13994636	13994682	AT2TE61760	.	-	HARBINGER	Harbinger	DNA	46	tiny	90	medium	10361213	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	14003627	14003886	AT2TE61810	.	+	ATENSPM2	En-Spm	DNA	259	short	114	medium	10370204	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	14008816	14008867	AT2TE61840	.	+	HELITRONY3	Helitron	RC	51	tiny	1399	high	10375393	chromoarm	494	no-CHH	no-CHH	.	.	.	.	.
Chr2	14008867	14009432	AT2TE61845	.	+	HELITRONY1E	Helitron	RC	565	short	447	high	10375444	chromoarm	545	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr2	14009432	14009453	AT2TE61850	.	+	ATREP10C	Helitron	RC	21	tiny	123	medium	10376009	chromoarm	559	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	14009453	14009793	AT2TE61855	.	-	ATREP3	Helitron	RC	340	short	1439	high	10376030	chromoarm	219	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	14052026	14052178	AT2TE62060	.	-	ATREP1	Helitron	RC	152	short	498	high	10418603	chromoarm	1043	no-CHH	no-CHH	.	.	.	.	.
Chr2	14052178	14052274	AT2TE62065	.	+	BRODYAGA2	MuDR	DNA	96	tiny	525	high	10418755	chromoarm	1129	no-CHH	no-CHH	.	.	.	.	.
Chr2	14052274	14053363	AT2TE62070	.	+	HELITRONY1E	Helitron	RC	1089	short	447	high	10418851	chromoarm	40	no-CHH	no-CHH	.	.	.	.	.
Chr2	14090017	14090120	AT2TE62260	.	+	ATMU2	MuDR	DNA	103	short	64	medium	10456594	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	14108787	14109939	AT2TE62350	.	-	ATREP10D	Helitron	RC	1152	short	1295	high	10475364	chromoarm	138	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	14109939	14109989	AT2TE62355	.	+	ATREP5	Helitron	RC	50	tiny	624	high	10476516	chromoarm	88	no-CHH	no-CHH	.	.	.	.	.
Chr2	14117882	14118659	AT2TE62390	.	+	ATREP5	Helitron	RC	777	short	624	high	10484459	chromoarm	866	no-CHH	no-CHH	.	.	.	.	.
Chr2	14150497	14150555	AT2TE62550	.	+	ATREP10B	Helitron	RC	58	tiny	491	high	10517074	chromoarm	728	no-CHH	no-CHH	.	.	.	.	.
Chr2	14150555	14151000	AT2TE62555	.	-	HELITRONY3	Helitron	RC	445	short	1399	high	10517132	chromoarm	713	no-CHH	no-CHH	.	.	.	.	.
Chr2	14180823	14180962	AT2TE62700	.	+	TSCL	.	LINE?	139	short	81	medium	10547400	chromoarm	312	no-CHH	no-CHH	.	.	.	.	.
Chr2	14182562	14183400	AT2TE62705	.	+	ATREP15	Helitron	RC	838	short	1003	high	10549139	chromoarm	151	no-CHH	no-CHH	.	.	.	.	.
Chr2	14190557	14191027	AT2TE62740	.	-	ATCOPIA78	Copia	LTR	470	short	24	low	10557134	chromoarm	511	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	14231393	14231566	AT2TE62940	.	+	ATREP15	Helitron	RC	173	short	1003	high	10597970	chromoarm	244	no-CHH	no-CHH	.	.	.	.	.
Chr2	14231566	14232229	AT2TE62945	.	-	HELITRONY3	Helitron	RC	663	short	1399	high	10598143	chromoarm	417	no-CHH	no-CHH	.	.	.	.	.
Chr2	14232229	14232376	AT2TE62950	.	-	ATREP10D	Helitron	RC	147	short	1295	high	10598806	chromoarm	1080	no-RdDM	no-CHH	.	.	.	.	.
Chr2	14232815	14233085	AT2TE62955	.	-	HELITRONY1B	Helitron	RC	270	short	414	high	10599392	chromoarm	1663	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	14233085	14233911	AT2TE62960	.	-	HELITRONY1E	Helitron	RC	826	short	447	high	10599662	chromoarm	837	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	14233911	14233967	AT2TE62965	.	-	HELITRONY1B	Helitron	RC	56	tiny	414	high	10600488	chromoarm	781	no-CHH	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	14257254	14258202	AT2TE63080	.	+	ATREP10D	Helitron	RC	948	short	1295	high	10623831	chromoarm	762	no-CHH	no-CHH	.	.	.	.	.
Chr2	14260827	14261576	AT2TE63090	.	-	HELITRONY3	Helitron	RC	749	short	1399	high	10627404	chromoarm	175	no-CHH	no-CHH	.	.	.	.	.
Chr2	14267343	14267403	AT2TE63120	.	+	VANDAL17	MuDR	DNA	60	tiny	178	medium	10633920	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	14267403	14267655	AT2TE63125	.	-	ATDNAI27T9C	MuDR	DNA	252	short	108	medium	10633980	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	14274498	14275375	AT2TE63150	.	-	ATREP3	Helitron	RC	877	short	1439	high	10641075	chromoarm	424	no-CHH	no-CHH	.	.	.	.	.
Chr2	14284643	14284742	AT2TE63200	.	+	RathE3_cons	.	RathE3_cons	99	tiny	104	medium	10651220	chromoarm	3161	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	14286561	14286724	AT2TE63205	.	+	ATCOPIA69	Copia	LTR	163	short	25	low	10653138	chromoarm	1821	no-CHH	no-CHH	.	.	.	.	.
Chr2	14289935	14290075	AT2TE63215	.	+	ATREP7	Helitron	RC	140	short	164	medium	10656512	chromoarm	1041	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr2	14290091	14290631	AT2TE63220	.	+	ATREP13	Helitron	RC	540	short	106	medium	10656668	chromoarm	485	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	14290636	14290799	AT2TE63225	.	-	RathE3_cons	.	RathE3_cons	164	short	104	medium	10657212	chromoarm	317	.	.	.	.	.	.	.
Chr2	14310907	14311165	AT2TE63320	.	-	HELITRONY3	Helitron	RC	258	short	1399	high	10677484	chromoarm	621	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr2	14311174	14311719	AT2TE63325	.	+	ATHPOGON1	Pogo	DNA	545	short	174	medium	10677751	chromoarm	425	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	14311719	14311822	AT2TE63330	.	+	ATREP15	Helitron	RC	103	short	1003	high	10678296	chromoarm	322	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	14332480	14333262	AT2TE63430	.	-	ATREP10D	Helitron	RC	782	short	1295	high	10699057	chromoarm	3867	no-CHH	no-CHH	.	.	.	.	.
Chr2	14333262	14335722	AT2TE63435	.	-	ATREP3	Helitron	RC	2460	medium	1439	high	10699839	chromoarm	1643	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	14335722	14335754	AT2TE63440	.	+	ATREP3	Helitron	RC	32	tiny	1439	high	10702299	chromoarm	1611	no-CHH	no-CHH	.	.	.	.	.
Chr2	14335754	14335916	AT2TE63445	.	+	ATREP15	Helitron	RC	162	short	1003	high	10702331	chromoarm	1449	no-CHH	no-CHH	.	.	.	.	.
Chr2	14363737	14364018	AT2TE63580	.	+	RP1_AT	.	DNA	282	short	87	medium	10730313	chromoarm	1158	.	.	.	.	.	.	.
Chr2	14364018	14364169	AT2TE63585	.	-	ATREP11	Helitron	RC	151	short	841	high	10730595	chromoarm	1007	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	14392079	14392608	AT2TE63720	.	+	HELITRONY1D	Helitron	RC	529	short	756	high	10758656	chromoarm	822	no-CHH	no-CHH	.	.	.	.	.
Chr2	14402227	14402422	AT2TE63770	.	+	VANDAL5A	MuDR	DNA	195	short	56	medium	10768804	chromoarm	77	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	14403963	14404394	AT2TE63775	.	+	ATDNAI27T9C	MuDR	DNA	431	short	108	medium	10770540	chromoarm	646	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	14404426	14404479	AT2TE63780	.	-	ATDNAI26T9	MuDR	DNA	53	tiny	25	low	10771003	chromoarm	859	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	14405719	14405888	AT2TE63785	.	+	ATDNAI27T9B	MuDR	DNA	169	short	43	low	10772296	chromoarm	168	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	14406699	14407576	AT2TE63790	.	-	ATREP4	Helitron	RC	877	short	832	high	10773276	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	14407576	14407610	AT2TE63795	.	-	ATREP6	Helitron	RC	34	tiny	181	medium	10774153	chromoarm	834	no-CHH	no-RdDM	.	.	.	.	.
Chr2	14407883	14412426	AT2TE63800	.	+	ATENSPM1	En-Spm	DNA	4543	medium	30	low	10774460	chromoarm	1141	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	14408870,14408874	14412038,14412029	+,+	transcript_id-"eaa6ac02-c532-464e-a84f-c45a3fe3c2d5|5",transcript_id-"d465930f-ccde-4c0c-8841-baae1ad132c4|17"
Chr2	14412426	14412449	AT2TE63805	.	+	ATENSPM1	En-Spm	DNA	23	tiny	30	low	10779003	chromoarm	1738	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr2	14415222	14415549	AT2TE63815	.	-	VANDALNX2	MuDR	DNA	327	short	37	low	10781799	chromoarm	522	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	14417022	14417298	AT2TE63820	.	+	VANDAL22	MuDR	DNA	276	short	48	low	10783599	chromoarm	2133	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	14418346	14418624	AT2TE63825	.	+	VANDAL22	MuDR	DNA	278	short	48	low	10784923	chromoarm	807	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	14439815	14439845	AT2TE63930	.	-	HELITRONY3	Helitron	RC	30	tiny	1399	high	10806392	chromoarm	408	no-CHH	no-CHH	.	.	.	.	.
Chr2	14439845	14439875	AT2TE63935	.	-	ATREP10A	Helitron	RC	30	tiny	279	high	10806422	chromoarm	438	no-CHH	no-CHH	.	.	.	.	.
Chr2	14439875	14440492	AT2TE63940	.	-	HELITRONY1D	Helitron	RC	617	short	756	high	10806452	chromoarm	468	no-CHH	no-CHH	.	.	.	.	.
Chr2	14440492	14440569	AT2TE63945	.	-	HELITRONY3	Helitron	RC	77	tiny	1399	high	10807069	chromoarm	535	no-CHH	no-CHH	.	.	.	.	.
Chr2	14457339	14457371	AT2TE64030	.	-	VANDAL22	MuDR	DNA	32	tiny	48	low	10823916	chromoarm	370	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	14457371	14458307	AT2TE64035	.	-	ATREP1	Helitron	RC	936	short	498	high	10823948	chromoarm	402	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	14458395	14458571	AT2TE64040	.	-	VANDAL22	MuDR	DNA	176	short	48	low	10824972	chromoarm	249	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	14471753	14471981	AT2TE64110	.	-	ATCOPIA81	Copia	LTR	228	short	6	low	10838330	chromoarm	243	no-CHH	no-CHH	.	.	.	.	.
Chr2	14476184	14476557	AT2TE64130	.	+	VANDAL17	MuDR	DNA	373	short	178	medium	10842761	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	14481242	14481558	AT2TE64150	.	-	HELITRONY3	Helitron	RC	316	short	1399	high	10847819	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	14484202	14484934	AT2TE64160	.	+	ATREP10D	Helitron	RC	732	short	1295	high	10850779	chromoarm	24	no-CHH	no-CHH	.	.	.	.	.
Chr2	14490930	14491306	AT2TE64190	.	+	ATREP19	.	DNA	376	short	189	medium	10857507	chromoarm	1488	no-CHH	no-CHH	.	.	.	.	.
Chr2	14492343	14492619	AT2TE64195	.	+	HELITRONY1B	Helitron	RC	276	short	414	high	10858920	chromoarm	1004	no-CHH	no-CHH	.	.	.	.	.
Chr2	14492619	14492956	AT2TE64200	.	+	ATTIRX1A	.	DNA	337	short	63	medium	10859196	chromoarm	667	no-CHH	no-CHH	.	.	.	.	.
Chr2	14492956	14492976	AT2TE64205	.	+	ATTIRX1A	.	DNA	20	tiny	63	medium	10859533	chromoarm	647	no-CHH	no-CHH	.	.	.	.	.
Chr2	14534918	14535142	AT2TE64410	.	-	ATCOPIA11	Copia	LTR	224	short	26	low	10901495	chromoarm	731	no-CHH	no-CHH	.	.	.	.	.
Chr2	14538181	14538248	AT2TE64420	.	-	ATLINE1_3A	L1	LINE	67	tiny	160	medium	10904758	chromoarm	808	no-CHH	no-CHH	.	.	.	.	.
Chr2	14553741	14555904	AT2TE64500	.	+	AT9TSD1	MuDR	DNA	2163	medium	55	medium	10920318	chromoarm	1197	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	14555991	14556122	AT2TE64505	.	-	ATREP11	Helitron	RC	131	short	841	high	10922568	chromoarm	979	no-CHH	no-CHH	.	.	.	.	.
Chr2	14556122	14557052	AT2TE64510	.	+	ATREP9	Helitron	RC	930	short	201	high	10922699	chromoarm	49	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	14557052	14557090	AT2TE64515	.	-	ATREP10A	Helitron	RC	38	tiny	279	high	10923629	chromoarm	11	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	14559673	14560127	AT2TE64525	.	-	ATREP10D	Helitron	RC	454	short	1295	high	10926250	chromoarm	138	no-CHH	no-CHH	.	.	.	.	.
Chr2	14571615	14572752	AT2TE64580	.	-	ATREP1	Helitron	RC	1137	short	498	high	10938192	chromoarm	419	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	14572752	14572821	AT2TE64585	.	+	ATREP1	Helitron	RC	69	tiny	498	high	10939329	chromoarm	350	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	14572821	14572986	AT2TE64590	.	+	ATREP5	Helitron	RC	165	short	624	high	10939398	chromoarm	185	no-CHH	no-CHH	.	.	.	.	.
Chr2	14587143	14587573	AT2TE64660	.	-	ATCOPIA17	Copia	LTR	430	short	16	low	10953720	chromoarm	2360	no-CHH	no-CHH	.	.	.	.	.
Chr2	14631913	14632343	AT2TE64890	.	-	ATREP11	Helitron	RC	430	short	841	high	10998490	chromoarm	134	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	14632343	14633029	AT2TE64895	.	+	HELITRONY1A	Helitron	RC	686	short	271	high	10998920	chromoarm	564	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	14633029	14633085	AT2TE64900	.	+	ATREP11A	Helitron	RC	56	tiny	95	medium	10999606	chromoarm	1212	no-CHH	no-CHH	.	.	.	.	.
Chr2	14636540	14636699	AT2TE64910	.	-	HELITRONY1B	Helitron	RC	159	short	414	high	11003117	chromoarm	943	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	14636699	14637241	AT2TE64915	.	-	HELITRONY3	Helitron	RC	542	short	1399	high	11003276	chromoarm	1102	no-CHH	no-CHH	.	.	.	.	.
Chr2	14637241	14637395	AT2TE64920	.	+	ATREP10D	Helitron	RC	154	short	1295	high	11003818	chromoarm	1644	no-CHH	no-CHH	.	.	.	.	.
Chr2	14652819	14653087	AT2TE65000	.	-	ATHILA7	Gypsy	LTR	268	short	134	medium	11019396	chromoarm	1523	no-CHH	no-CHH	.	.	.	.	.
Chr2	14653180	14653863	AT2TE65005	.	+	ATREP11	Helitron	RC	683	short	841	high	11019757	chromoarm	747	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	14678212	14678768	AT2TE65120	.	+	ATREP15	Helitron	RC	556	short	1003	high	11044789	chromoarm	975	no-CHH	no-CHH	.	.	.	.	.
Chr2	14682471	14683688	AT2TE65130	.	+	HELITRONY3	Helitron	RC	1217	short	1399	high	11049048	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	14683688	14683773	AT2TE65135	.	-	ARNOLDY2	MuDR	DNA	85	tiny	288	high	11050265	chromoarm	1173	no-CHH	no-CHH	.	.	.	.	.
Chr2	14701312	14702080	AT2TE65220	.	-	ATCOPIA38	Copia	LTR	768	short	9	low	11067889	chromoarm	522	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	14701871	14701898	AT2TE65225	.	-	ATCOPIA38	Copia	LTR	27	tiny	9	low	11068448	chromoarm	704	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr2	14702521	14702627	AT2TE65230	.	-	ATMU1	MuDR	DNA	106	short	59	medium	11069098	chromoarm	0	no-CHH	no-CHH	ExpressedAndAnnotated	14702474	14704352	+	transcript_id-"5c0c656f-5e28-4c94-a449-86e8ac1ca537|24"
Chr2	14713969	14714774	AT2TE65290	.	+	ATCOPIA57	Copia	LTR	805	short	48	low	11080546	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	14721707	14721970	AT2TE65330	.	-	BRODYAGA1A	MuDR	DNA	263	short	586	high	11088284	chromoarm	436	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	14785477	14785940	AT2TE65650	.	-	HELITRONY3A	Helitron	RC	463	short	49	low	11152054	chromoarm	741	no-CHH	no-CHH	.	.	.	.	.
Chr2	14810736	14810759	AT2TE65780	.	+	BRODYAGA1	MuDR	DNA	23	tiny	251	high	11177313	chromoarm	664	RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	14810759	14811945	AT2TE65785	.	+	BRODYAGA1	MuDR	DNA	1186	short	251	high	11177336	chromoarm	687	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	14811945	14812180	AT2TE65790	.	-	BRODYAGA1	MuDR	DNA	235	short	251	high	11178522	chromoarm	1809	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	14812878	14813314	AT2TE65795	.	-	BRODYAGA2	MuDR	DNA	436	short	525	high	11179455	chromoarm	675	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	14822084	14822802	AT2TE65830	.	+	ATREP10D	Helitron	RC	718	short	1295	high	11188661	chromoarm	754	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	14840798	14842135	AT2TE65920	.	-	ATREP3	Helitron	RC	1337	short	1439	high	11207375	chromoarm	735	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	14842135	14842158	AT2TE65925	.	-	ATREP3	Helitron	RC	23	tiny	1439	high	11208712	chromoarm	712	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	14848709	14849331	AT2TE65950	.	+	BRODYAGA1	MuDR	DNA	622	short	251	high	11215286	chromoarm	47	no-CHH	no-CHH	.	.	.	.	.
Chr2	14921043	14921281	AT2TE66310	.	-	BRODYAGA1A	MuDR	DNA	238	short	586	high	11287620	chromoarm	305	no-CHH	no-CHH	.	.	.	.	.
Chr2	14931770	14932013	AT2TE66360	.	+	ATCOPIA50	Copia	LTR	243	short	17	low	11298347	chromoarm	1152	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	14951519	14951835	AT2TE66460	.	+	BOMZH2	MuDR	DNA	316	short	47	low	11318096	chromoarm	413	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	14951836	14952861	AT2TE66465	.	+	BOMZH1	MuDR	DNA	1025	short	28	low	11318413	chromoarm	730	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	14952861	14953191	AT2TE66470	.	-	BOMZH2	MuDR	DNA	330	short	47	low	11319438	chromoarm	1755	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	14965986	14966434	AT2TE66530	.	-	VANDAL17	MuDR	DNA	448	short	178	medium	11332563	chromoarm	393	no-CHH	no-CHH	.	.	.	.	.
Chr2	14966434	14966478	AT2TE66535	.	+	BRODYAGA1	MuDR	DNA	44	tiny	251	high	11333011	chromoarm	349	no-CHH	no-CHH	.	.	.	.	.
Chr2	14989323	14989378	AT2TE66650	.	+	TAG2	HAT	DNA	55	tiny	86	medium	11355900	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	14989457	14989536	AT2TE66655	.	+	TAG2	HAT	DNA	79	tiny	86	medium	11356034	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	15007579	15007633	AT2TE66740	.	+	BRODYAGA1A	MuDR	DNA	54	tiny	586	high	11374156	chromoarm	1790	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	15007633	15009235	AT2TE66745	.	+	ATREP10D	Helitron	RC	1602	short	1295	high	11374210	chromoarm	1689	no-CHH	no-CHH	.	.	.	.	.
Chr2	15058736	15058898	AT2TE66990	.	-	ATDNA12T3_2	.	DNA	162	short	660	high	11425313	chromoarm	960	no-CHH	no-CHH	.	.	.	.	.
Chr2	15072343	15072485	AT2TE67060	.	+	ATCOPIA1	Copia	LTR	142	short	11	low	11438920	chromoarm	739	no-CHH	no-CHH	.	.	.	.	.
Chr2	15094064	15094330	AT2TE67170	.	+	ATCOPIA28	Copia	LTR	266	short	81	medium	11460641	chromoarm	2365	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	15096040	15096531	AT2TE67175	.	+	HELITRONY3	Helitron	RC	491	short	1399	high	11462617	chromoarm	4341	no-CHH	no-CHH	.	.	.	.	.
Chr2	15098139	15098837	AT2TE67180	.	-	ATREP10D	Helitron	RC	698	short	1295	high	11464716	chromoarm	5995	no-CHH	no-CHH	.	.	.	.	.
Chr2	15110101	15110326	AT2TE67240	.	-	RP1_AT	.	DNA	225	short	87	medium	11476678	chromoarm	308	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	15111428	15111859	AT2TE67245	.	-	ATDNA2T9C	MuDR	DNA	431	short	242	high	11478005	chromoarm	110	no-CHH	no-CHH	.	.	.	.	.
Chr2	15113355	15113962	AT2TE67250	.	-	BRODYAGA1A	MuDR	DNA	607	short	586	high	11479932	chromoarm	107	no-CHH	no-CHH	.	.	.	.	.
Chr2	15114007	15114095	AT2TE67255	.	+	ATDNAI27T9C	MuDR	DNA	88	tiny	108	medium	11480584	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	15130510	15130906	AT2TE67330	.	+	VANDAL3	MuDR	DNA	396	short	177	medium	11497087	chromoarm	2694	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	15130952	15131580	AT2TE67335	.	-	HELITRONY3	Helitron	RC	628	short	1399	high	11497529	chromoarm	3136	no-CHH	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	15133800	15134225	AT2TE67345	.	+	HELITRONY3	Helitron	RC	426	short	1399	high	11500376	chromoarm	1626	.	.	.	.	.	.	.
Chr2	15134225	15134771	AT2TE67350	.	+	ATREP2	Helitron	RC	546	short	164	medium	11500802	chromoarm	1080	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	15134771	15134793	AT2TE67355	.	+	ATREP11A	Helitron	RC	22	tiny	95	medium	11501348	chromoarm	1058	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	15142616	15142777	AT2TE67390	.	-	ATCOPIA22	Copia	LTR	161	short	14	low	11509193	chromoarm	234	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	15155814	15157010	AT2TE67460	.	-	ATREP11	Helitron	RC	1196	short	841	high	11522391	chromoarm	1620	no-CHH	no-CHH	.	.	.	.	.
Chr2	15161402	15161860	AT2TE67480	.	-	HELITRONY1D	Helitron	RC	458	short	756	high	11527979	chromoarm	16	no-CHH	no-CHH	.	.	.	.	.
Chr2	15221760	15221958	AT2TE67780	.	-	BRODYAGA1A	MuDR	DNA	198	short	586	high	11588337	chromoarm	2733	no-CHH	no-CHH	.	.	.	.	.
Chr2	15256637	15256661	AT2TE67960	.	+	BRODYAGA1A	MuDR	DNA	24	tiny	586	high	11623214	chromoarm	921	no-CHH	no-CHH	.	.	.	.	.
Chr2	15256661	15257469	AT2TE67965	.	+	ATREP6	Helitron	RC	808	short	181	medium	11623238	chromoarm	113	no-CHH	no-CHH	.	.	.	.	.
Chr2	15273636	15274176	AT2TE68040	.	+	ATLINE2	L1	LINE	540	short	138	medium	11640213	chromoarm	1019	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	15275333	15275813	AT2TE68045	.	+	HELITRONY2	Helitron	RC	480	short	198	medium	11641910	chromoarm	2716	no-CHH	no-CHH	.	.	.	.	.
Chr2	15288588	15288617	AT2TE68100	.	-	ATENSPM6	En-Spm	DNA	29	tiny	151	medium	11655165	chromoarm	0	no-CHH	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	15288617	15288920	AT2TE68105	.	-	VANDAL17	MuDR	DNA	303	short	178	medium	11655194	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	15314963	15315279	AT2TE68230	.	-	ATREP5	Helitron	RC	316	short	624	high	11681540	chromoarm	691	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	15324513	15324771	AT2TE68280	.	-	ATREP5	Helitron	RC	258	short	624	high	11691090	chromoarm	465	no-CHH	no-CHH	.	.	.	.	.
Chr2	15332617	15332753	AT2TE68320	.	+	VANDAL17	MuDR	DNA	136	short	178	medium	11699194	chromoarm	170	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	15332753	15333451	AT2TE68325	.	+	ARNOLDY2	MuDR	DNA	698	short	288	high	11699330	chromoarm	306	no-CHH	no-CHH	.	.	.	.	.
Chr2	15335513	15335632	AT2TE68335	.	+	ATDNAI27T9A	MuDR	DNA	119	short	116	medium	11702090	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	15370978	15371089	AT2TE68510	.	-	ATREP10B	Helitron	RC	111	short	491	high	11737555	chromoarm	252	no-CHH	no-CHH	.	.	.	.	.
Chr2	15371089	15371985	AT2TE68515	.	-	ATREP10D	Helitron	RC	896	short	1295	high	11737666	chromoarm	363	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	15371985	15372147	AT2TE68520	.	-	ATREP3	Helitron	RC	162	short	1439	high	11738562	chromoarm	1259	no-CHH	no-CHH	.	.	.	.	.
Chr2	15372152	15372190	AT2TE68525	.	-	ATREP10B	Helitron	RC	38	tiny	491	high	11738729	chromoarm	1426	no-RdDM	no-CHH	.	.	.	.	.
Chr2	15376081	15376520	AT2TE68535	.	-	ATREP10D	Helitron	RC	439	short	1295	high	11742658	chromoarm	3409	no-CHH	no-CHH	.	.	.	.	.
Chr2	15376520	15377134	AT2TE68540	.	-	ATREP10B	Helitron	RC	614	short	491	high	11743097	chromoarm	2795	no-CHH	no-CHH	.	.	.	.	.
Chr2	15377134	15377332	AT2TE68545	.	-	ATREP10D	Helitron	RC	198	short	1295	high	11743711	chromoarm	2597	no-CHH	no-CHH	.	.	.	.	.
Chr2	15386703	15387519	AT2TE68590	.	+	ATREP4	Helitron	RC	816	short	832	high	11753280	chromoarm	282	no-CHH	no-CHH	.	.	.	.	.
Chr2	15395128	15395271	AT2TE68630	.	-	ATCOPIA8A	Copia	LTR	143	short	12	low	11761705	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	15395271	15395316	AT2TE68635	.	-	ATCOPIA8A	Copia	LTR	45	tiny	12	low	11761848	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	15404493	15405067	AT2TE68680	.	-	ATREP15	Helitron	RC	574	short	1003	high	11771070	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	15448701	15449107	AT2TE68900	.	+	ATTIRX1C	.	DNA	406	short	39	low	11815278	chromoarm	731	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	15471486	15471853	AT2TE69010	.	+	BRODYAGA1A	MuDR	DNA	367	short	586	high	11838063	chromoarm	1015	no-CHH	no-CHH	.	.	.	.	.
Chr2	15476201	15476286	AT2TE69030	.	+	ATREP11	Helitron	RC	85	tiny	841	high	11842778	chromoarm	1571	no-CHH	no-CHH	.	.	.	.	.
Chr2	15476286	15477067	AT2TE69035	.	+	ATREP10D	Helitron	RC	781	short	1295	high	11842863	chromoarm	1656	no-CHH	no-CHH	.	.	.	.	.
Chr2	15511979	15512025	AT2TE69210	.	-	RathE2_cons	.	RathE2_cons	46	tiny	74	medium	11878556	chromoarm	101	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	15516286	15516515	AT2TE69230	.	-	VANDAL21	MuDR	DNA	229	short	64	medium	11882863	chromoarm	0	no-CHH	RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	15566813	15568070	AT2TE69490	.	+	ATREP12	Helitron	RC	1257	short	22	low	11933390	chromoarm	1219	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	15566955,15566961	15567571,15567959	+,+	transcript_id-"cc1a81c4-e505-4709-8d01-dae6ade497c9|4",transcript_id-"9d753e8b-b715-47af-a65d-21c076a725fd|11"
Chr2	15568218	15568759	AT2TE69495	.	-	ATCOPIA28	Copia	LTR	541	short	81	medium	11934795	chromoarm	530	no-CHH	no-CHH	.	.	.	.	.
Chr2	15575083	15575106	AT2TE69520	.	-	ATREP3	Helitron	RC	23	tiny	1439	high	11941660	chromoarm	1229	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	15575106	15575857	AT2TE69525	.	+	ATREP10B	Helitron	RC	751	short	491	high	11941683	chromoarm	478	no-CHH	no-CHH	.	.	.	.	.
Chr2	15575857	15575900	AT2TE69530	.	-	BRODYAGA2	MuDR	DNA	43	tiny	525	high	11942434	chromoarm	435	no-CHH	no-CHH	.	.	.	.	.
Chr2	15583366	15583540	AT2TE69570	.	-	ATCOPIA67	Copia	LTR	174	short	15	low	11949943	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	15595120	15597210	AT2TE69630	.	+	ATMU7	MuDR	DNA	2090	medium	32	low	11961697	chromoarm	305	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	15623345	15623884	AT2TE69760	.	-	HELITRONY1C	Helitron	RC	539	short	120	medium	11989922	chromoarm	298	no-CHH	no-CHH	.	.	.	.	.
Chr2	15688535	15689089	AT2TE70090	.	+	HELITRONY1D	Helitron	RC	554	short	756	high	12055112	chromoarm	742	no-CHH	no-CHH	.	.	.	.	.
Chr2	15713413	15713787	AT2TE70210	.	+	BRODYAGA1A	MuDR	DNA	374	short	586	high	12079990	chromoarm	2885	no-CHH	no-CHH	.	.	.	.	.
Chr2	15729520	15729772	AT2TE70290	.	-	ATTIRTA1	Tc1	DNA	252	short	95	medium	12096097	chromoarm	510	no-CHH	no-CHH	.	.	.	.	.
Chr2	15730619	15730953	AT2TE70295	.	+	ATREP3	Helitron	RC	334	short	1439	high	12097196	chromoarm	1609	no-CHH	no-CHH	.	.	.	.	.
Chr2	15731179	15731521	AT2TE70300	.	+	ATREP3	Helitron	RC	342	short	1439	high	12097756	chromoarm	2169	no-CHH	no-CHH	.	.	.	.	.
Chr2	15731521	15732351	AT2TE70305	.	+	HELITRONY3	Helitron	RC	830	short	1399	high	12098098	chromoarm	2511	no-CHH	no-CHH	.	.	.	.	.
Chr2	15810490	15810563	AT2TE70700	.	-	ATTIRX1D	.	DNA	73	tiny	28	low	12177067	chromoarm	17	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	15819147	15819204	AT2TE70740	.	-	ATREP3	Helitron	RC	57	tiny	1439	high	12185724	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	15819221	15819889	AT2TE70745	.	-	VANDAL17	MuDR	DNA	668	short	178	medium	12185798	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	15836717	15836784	AT2TE70830	.	-	ATLINE2	L1	LINE	67	tiny	138	medium	12203294	chromoarm	58	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	15845107	15845330	AT2TE70870	.	+	RathE3_cons	.	RathE3_cons	223	short	104	medium	12211684	chromoarm	19	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	15847025	15847339	AT2TE70875	.	+	ATREP5	Helitron	RC	314	short	624	high	12213602	chromoarm	201	no-CHH	no-CHH	.	.	.	.	.
Chr2	15880072	15880553	AT2TE71040	.	-	ATHATN1	HAT	DNA	481	short	69	medium	12246649	chromoarm	661	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	15882779	15883287	AT2TE71050	.	-	ATREP4	Helitron	RC	508	short	832	high	12249356	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	15884475	15885121	AT2TE71055	.	+	ATHATN2	HAT	DNA	647	short	46	low	12251051	chromoarm	809	.	.	.	.	.	.	.
Chr2	15886118	15886395	AT2TE71060	.	-	ATMUN1	MuDR	DNA	277	short	107	medium	12252695	chromoarm	566	no-CHH	no-CHH	.	.	.	.	.
Chr2	15906117	15906476	AT2TE71160	.	+	HELITRON4	Helitron	RC	359	short	199	medium	12272694	chromoarm	385	no-CHH	no-CHH	.	.	.	.	.
Chr2	15939715	15939856	AT2TE71330	.	+	DT1	Mariner	DNA	141	short	123	medium	12306292	chromoarm	2363	PolIV-RdDM	RDR6-RdDM	.	.	.	.	.
Chr2	15940463	15941078	AT2TE71335	.	-	HELITRONY3	Helitron	RC	615	short	1399	high	12307040	chromoarm	3111	no-CHH	no-CHH	.	.	.	.	.
Chr2	15941632	15942405	AT2TE71340	.	-	HELITRONY1D	Helitron	RC	773	short	756	high	12308209	chromoarm	2872	no-CHH	no-CHH	.	.	.	.	.
Chr2	15945162	15945249	AT2TE71350	.	+	ATDNAI27T9A	MuDR	DNA	87	tiny	116	medium	12311739	chromoarm	28	no-CHH	no-CHH	.	.	.	.	.
Chr2	15955358	15955488	AT2TE71400	.	+	LIMPET1	MuDR	DNA	130	short	116	medium	12321935	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	15980307	15980363	AT2TE71530	.	+	ATCOPIA39	Copia	LTR	56	tiny	5	low	12346884	chromoarm	162	no-CHH	no-CHH	.	.	.	.	.
Chr2	15980363	15980669	AT2TE71535	.	+	ATCOPIA36	Copia	LTR	306	short	14	low	12346940	chromoarm	218	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	15989865	15990001	AT2TE71580	.	-	SIMPLEGUY1	Harbinger	DNA	136	short	116	medium	12356442	chromoarm	111	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	16006422	16006839	AT2TE71660	.	-	ATREP15	Helitron	RC	417	short	1003	high	12372999	chromoarm	161	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	16010760	16011130	AT2TE71670	.	-	HELITRONY1D	Helitron	RC	371	short	756	high	12377336	chromoarm	221	.	.	LowExpressed	.	.	.	.
Chr2	16020005	16020722	AT2TE71720	.	+	ATREP4	Helitron	RC	717	short	832	high	12386582	chromoarm	505	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	16022057	16022138	AT2TE71725	.	-	ARNOLDY2	MuDR	DNA	81	tiny	288	high	12388634	chromoarm	0	PolIV-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	16022138	16023402	AT2TE71730	.	-	ARNOLDY1	MuDR	DNA	1264	short	237	high	12388715	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	16023403	16023576	AT2TE71735	.	+	ARNOLDY2	MuDR	DNA	174	short	288	high	12389979	chromoarm	0	.	.	.	.	.	.	.
Chr2	16023576	16023966	AT2TE71740	.	-	ARNOLDY1	MuDR	DNA	390	short	237	high	12390153	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	16023966	16024532	AT2TE71745	.	-	HELITRONY3	Helitron	RC	566	short	1399	high	12390543	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	16030118	16030650	AT2TE71770	.	+	ATLANTYS3	Gypsy	LTR	532	short	142	medium	12396695	chromoarm	696	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	16045588	16045689	AT2TE71850	.	+	ATDNAI27T9A	MuDR	DNA	101	short	116	medium	12412165	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	16053794	16054198	AT2TE71890	.	-	ATDNA2T9C	MuDR	DNA	404	short	242	high	12420371	chromoarm	1289	no-CHH	no-CHH	.	.	.	.	.
Chr2	16071649	16071742	AT2TE71980	.	+	ATCOPIA11	Copia	LTR	93	tiny	26	low	12438226	chromoarm	399	no-CHH	no-CHH	.	.	.	.	.
Chr2	16101618	16101728	AT2TE72130	.	-	HARBINGER	Harbinger	DNA	110	short	90	medium	12468195	chromoarm	287	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	16108587	16108751	AT2TE72160	.	-	ATDNAI27T9C	MuDR	DNA	164	short	108	medium	12475164	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	16125640	16125684	AT2TE72250	.	+	ATCOPIA67	Copia	LTR	44	tiny	15	low	12492217	chromoarm	195	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	16125700	16126499	AT2TE72255	.	+	ATCOPIA21	Copia	LTR	799	short	14	low	12492277	chromoarm	255	no-CHH	no-CHH	.	.	.	.	.
Chr2	16127215	16127556	AT2TE72260	.	-	HELITRONY1D	Helitron	RC	341	short	756	high	12493792	chromoarm	924	no-CHH	no-CHH	.	.	.	.	.
Chr2	16150386	16151304	AT2TE72380	.	-	AT9NMU1	MuDR	DNA	918	short	45	low	12516963	chromoarm	748	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	16151304	16151336	AT2TE72385	.	-	AT9NMU1	MuDR	DNA	32	tiny	45	low	12517881	chromoarm	1214	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	16156759	16157140	AT2TE72410	.	-	ATREP5	Helitron	RC	381	short	624	high	12523336	chromoarm	457	no-CHH	no-CHH	.	.	.	.	.
Chr2	16173157	16173614	AT2TE72490	.	+	ATREP4	Helitron	RC	457	short	832	high	12539734	chromoarm	396	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	16187347	16187774	AT2TE72560	.	+	HELITRONY3	Helitron	RC	427	short	1399	high	12553924	chromoarm	272	no-CHH	no-CHH	.	.	.	.	.
Chr2	16271697	16271739	AT2TE72990	.	-	HELITRONY1D	Helitron	RC	42	tiny	756	high	12638274	chromoarm	2395	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	16271739	16272336	AT2TE72995	.	-	ATREP1	Helitron	RC	597	short	498	high	12638316	chromoarm	1798	no-CHH	no-CHH	.	.	.	.	.
Chr2	16279603	16280349	AT2TE73030	.	+	ATMU1	MuDR	DNA	746	short	59	medium	12646180	chromoarm	1789	PolIV-RdDM	no-RdDM	ExpressedAndAnnotated	16279834	16280469	+	transcript_id-"4b0a5534-5b00-46ff-bd59-080a92d554f0|3"
Chr2	16280583	16281268	AT2TE73035	.	-	ATREP3	Helitron	RC	686	short	1439	high	12647159	chromoarm	870	.	.	.	.	.	.	.
Chr2	16291839	16291912	AT2TE73080	.	+	HARBINGER	Harbinger	DNA	73	tiny	90	medium	12658416	chromoarm	0	no-CHH	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	16302102	16302178	AT2TE73130	.	-	ATREP4	Helitron	RC	76	tiny	832	high	12668679	chromoarm	929	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	16302178	16303298	AT2TE73135	.	-	HELITRONY1B	Helitron	RC	1120	short	414	high	12668755	chromoarm	128	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	16303298	16303327	AT2TE73140	.	-	ATHPOGON1	Pogo	DNA	29	tiny	174	medium	12669875	chromoarm	99	no-RdDM	no-CHH	.	.	.	.	.
Chr2	16303327	16303374	AT2TE73145	.	+	HELITRONY1A	Helitron	RC	47	tiny	271	high	12669904	chromoarm	52	no-CHH	no-CHH	.	.	.	.	.
Chr2	16337164	16337596	AT2TE73310	.	+	BRODYAGA2	MuDR	DNA	432	short	525	high	12703741	chromoarm	1743	no-CHH	no-CHH	.	.	.	.	.
Chr2	16340932	16348707	AT2TE73320	.	-	ATREP3	Helitron	RC	7775	long	1439	high	12707509	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	16341761	16342456	AT2TE73325	.	+	BRODYAGA2	MuDR	DNA	695	short	525	high	12708338	chromoarm	1821	no-CHH	no-CHH	.	.	.	.	.
Chr2	16342456	16342619	AT2TE73330	.	+	ATREP11	Helitron	RC	163	short	841	high	12709033	chromoarm	1658	no-CHH	no-CHH	.	.	.	.	.
Chr2	16347337	16348054	AT2TE73350	.	+	TAG3N1	HAT	DNA	717	short	97	medium	12713914	chromoarm	729	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	16362240	16363054	AT2TE73420	.	-	HELITRONY3	Helitron	RC	814	short	1399	high	12728817	chromoarm	2443	no-CHH	no-CHH	.	.	.	.	.
Chr2	16363054	16363079	AT2TE73425	.	+	ATREP11	Helitron	RC	25	tiny	841	high	12729631	chromoarm	3207	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	16369967	16370355	AT2TE73450	.	+	ATREP1	Helitron	RC	388	short	498	high	12736544	chromoarm	1736	no-CHH	no-CHH	.	.	.	.	.
Chr2	16370510	16370728	AT2TE73455	.	-	ATREP8	Helitron	RC	218	short	75	medium	12737087	chromoarm	2279	no-CHH	no-CHH	.	.	.	.	.
Chr2	16370728	16371447	AT2TE73460	.	+	ATREP15	Helitron	RC	719	short	1003	high	12737305	chromoarm	2497	no-CHH	no-CHH	.	.	.	.	.
Chr2	16371447	16371625	AT2TE73465	.	+	ATREP4	Helitron	RC	178	short	832	high	12738024	chromoarm	3216	no-CHH	no-CHH	.	.	.	.	.
Chr2	16379575	16380843	AT2TE73500	.	-	ATREP10D	Helitron	RC	1268	short	1295	high	12746152	chromoarm	803	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	16380843	16381037	AT2TE73505	.	-	ATREP15	Helitron	RC	194	short	1003	high	12747420	chromoarm	609	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	16417617	16417863	AT2TE73690	.	+	ATENSPM5	En-Spm	DNA	246	short	111	medium	12784194	chromoarm	0	no-CHH	no-CHH	ExpressedAndAnnotated	16417891	16417520	-	transcript_id-"3f05d5bd-810e-4fd3-927d-b43e8e092893|4"
Chr2	16467346	16467949	AT2TE73940	.	+	ATREP11	Helitron	RC	603	short	841	high	12833923	chromoarm	270	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	16524809	16525171	AT2TE74230	.	+	BRODYAGA1	MuDR	DNA	362	short	251	high	12891386	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	16557804	16558800	AT2TE74400	.	+	ATREP10B	Helitron	RC	996	short	491	high	12924381	chromoarm	503	no-CHH	no-CHH	.	.	.	.	.
Chr2	16560515	16560782	AT2TE74405	.	-	DT1	Mariner	DNA	267	short	123	medium	12927092	chromoarm	1268	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	16574500	16574718	AT2TE74470	.	+	ATREP4	Helitron	RC	218	short	832	high	12941077	chromoarm	1155	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	16574720	16575666	AT2TE74475	.	+	ATHPOGON1	Pogo	DNA	946	short	174	medium	12941297	chromoarm	583	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	16575666	16575717	AT2TE74480	.	-	ATREP3	Helitron	RC	51	tiny	1439	high	12942243	chromoarm	532	no-CHH	no-CHH	.	.	.	.	.
Chr2	16623792	16623979	AT2TE74720	.	-	ARNOLD2	MuDR	DNA	187	short	68	medium	12990369	chromoarm	134	no-CHH	no-CHH	.	.	.	.	.
Chr2	16625760	16626817	AT2TE74725	.	+	SIMPLEHAT1	HAT	DNA	1057	short	56	medium	12992337	chromoarm	612	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	16664999	16665105	AT2TE74910	.	+	ATHPOGON3	Pogo	DNA	106	short	118	medium	13031576	chromoarm	694	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	16740601	16740922	AT2TE75290	.	-	HELITRONY3	Helitron	RC	321	short	1399	high	13107178	chromoarm	298	no-CHH	no-CHH	.	.	.	.	.
Chr2	16742713	16742984	AT2TE75295	.	-	ATDNA2T9C	MuDR	DNA	271	short	242	high	13109290	chromoarm	122	no-CHH	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	16751242	16751343	AT2TE75330	.	+	ATCOPIA2	Copia	LTR	101	short	6	low	13117819	chromoarm	336	no-CHH	no-CHH	.	.	.	.	.
Chr2	16769463	16769644	AT2TE75420	.	-	ATCOPIA96	Copia	LTR	181	short	16	low	13136040	chromoarm	389	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	16782782	16782932	AT2TE75490	.	+	VANDAL5A	MuDR	DNA	150	short	56	medium	13149359	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	16794356	16795209	AT2TE75550	.	-	ATREP10B	Helitron	RC	853	short	491	high	13160933	chromoarm	28	no-CHH	no-CHH	.	.	.	.	.
Chr2	16795209	16795251	AT2TE75555	.	-	ATREP10B	Helitron	RC	42	tiny	491	high	13161786	chromoarm	881	no-CHH	no-CHH	.	.	.	.	.
Chr2	16797543	16797664	AT2TE75565	.	-	VANDAL6	MuDR	DNA	121	short	89	medium	13164120	chromoarm	0	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	16797664	16797695	AT2TE75570	.	+	LIMPET1	MuDR	DNA	31	tiny	116	medium	13164241	chromoarm	79	no-CHH	no-CHH	.	.	.	.	.
Chr2	16814292	16814413	AT2TE75650	.	-	ATCOPIA57	Copia	LTR	121	short	48	low	13180869	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	16814413	16814644	AT2TE75655	.	-	ATCOPIA57	Copia	LTR	231	short	48	low	13180990	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	16842522	16842858	AT2TE75790	.	+	ATREP6	Helitron	RC	336	short	181	medium	13209099	chromoarm	383	no-CHH	no-CHH	.	.	.	.	.
Chr2	16875597	16877147	AT2TE75960	.	+	HELITRONY3	Helitron	RC	1550	short	1399	high	13242174	chromoarm	152	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	16883455	16884171	AT2TE75990	.	+	ATREP10A	Helitron	RC	716	short	279	high	13250032	chromoarm	1090	no-CHH	no-CHH	.	.	.	.	.
Chr2	16917365	16917524	AT2TE76160	.	-	ATCOPIA38A	Copia	LTR	159	short	2	low	13283942	chromoarm	148	no-CHH	no-CHH	.	.	.	.	.
Chr2	16920990	16921448	AT2TE76170	.	-	ATDNA2T9C	MuDR	DNA	458	short	242	high	13287567	chromoarm	1367	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	16921593	16921726	AT2TE76175	.	+	VANDAL14	MuDR	DNA	133	short	25	low	13288170	chromoarm	1814	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	16929923	16930616	AT2TE76210	.	+	ATREP4	Helitron	RC	693	short	832	high	13296500	chromoarm	828	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	16939650	16939745	AT2TE76260	.	-	HELITRONY3	Helitron	RC	95	tiny	1399	high	13306227	chromoarm	34	no-CHH	no-CHH	.	.	.	.	.
Chr2	16939745	16940791	AT2TE76265	.	+	ATREP11	Helitron	RC	1046	short	841	high	13306322	chromoarm	129	no-CHH	no-CHH	.	.	.	.	.
Chr2	16940791	16940822	AT2TE76270	.	+	HELITRONY1D	Helitron	RC	31	tiny	756	high	13307368	chromoarm	243	no-CHH	no-CHH	.	.	.	.	.
Chr2	16953054	16953396	AT2TE76330	.	+	ATLINE1_3A	L1	LINE	342	short	160	medium	13319631	chromoarm	1407	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	16957050	16958075	AT2TE76340	.	-	HELITRONY3	Helitron	RC	1025	short	1399	high	13323627	chromoarm	178	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	16972601	16972709	AT2TE76410	.	+	ATLINEIII	L1	LINE	108	short	196	medium	13339178	chromoarm	1397	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	16972709	16972742	AT2TE76415	.	+	ATLINE2	L1	LINE	33	tiny	138	medium	13339286	chromoarm	1364	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	16972742	16973832	AT2TE76420	.	+	ATLINE2	L1	LINE	1090	short	138	medium	13339319	chromoarm	274	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	16997624	16998030	AT2TE76540	.	+	BRODYAGA1A	MuDR	DNA	406	short	586	high	13364201	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	17005213	17005419	AT2TE76580	.	+	ATREP10D	Helitron	RC	206	short	1295	high	13371790	chromoarm	2844	no-CHH	no-CHH	.	.	.	.	.
Chr2	17005420	17006521	AT2TE76585	.	-	ATREP10B	Helitron	RC	1102	short	491	high	13371996	chromoarm	1742	.	.	.	.	.	.	.
Chr2	17008779	17009940	AT2TE76595	.	-	ATREP10D	Helitron	RC	1161	short	1295	high	13375356	chromoarm	102	no-CHH	no-RdDM	.	.	.	.	.
Chr2	17059411	17059769	AT2TE76840	.	+	ATREP6	Helitron	RC	358	short	181	medium	13425988	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	17090614	17091060	AT2TE77000	.	-	HELITRON4	Helitron	RC	446	short	199	medium	13457191	chromoarm	288	no-CHH	no-CHH	.	.	.	.	.
Chr2	17092869	17093069	AT2TE77005	.	+	ATGP9B	Gypsy	LTR	201	short	27	low	13459445	chromoarm	23	.	.	ExpressedAndAnnotated	17092611	17093023	+	transcript_id-"c250759a-4ff2-499e-8071-9895409d42ab|23"
Chr2	17095129	17095512	AT2TE77015	.	+	ATGP9B	Gypsy	LTR	383	short	27	low	13461706	chromoarm	0	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	17109717	17110681	AT2TE77080	.	-	ATREP10D	Helitron	RC	964	short	1295	high	13476294	chromoarm	5	no-CHH	no-CHH	.	.	.	.	.
Chr2	17146828	17147730	AT2TE77260	.	-	ATREP1	Helitron	RC	902	short	498	high	13513405	chromoarm	2142	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	17147129	17147653	AT2TE77265	.	-	ATREP2	Helitron	RC	524	short	164	medium	13513706	chromoarm	2443	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	17190092	17190280	AT2TE77480	.	+	ATLINE1A	L1	LINE	188	short	289	high	13556669	chromoarm	974	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	17191676	17192068	AT2TE77485	.	-	ATREP4	Helitron	RC	392	short	832	high	13558253	chromoarm	218	no-CHH	no-CHH	.	.	.	.	.
Chr2	17204490	17204608	AT2TE77540	.	+	ATREP3	Helitron	RC	118	short	1439	high	13571067	chromoarm	1932	no-CHH	no-CHH	.	.	.	.	.
Chr2	17204608	17205477	AT2TE77545	.	-	ATREP5	Helitron	RC	869	short	624	high	13571185	chromoarm	1063	no-CHH	no-CHH	.	.	.	.	.
Chr2	17205477	17205773	AT2TE77550	.	-	HELITRONY3	Helitron	RC	296	short	1399	high	13572054	chromoarm	767	no-CHH	no-CHH	.	.	.	.	.
Chr2	17205773	17206413	AT2TE77555	.	+	HELITRONY1D	Helitron	RC	640	short	756	high	13572350	chromoarm	127	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	17207626	17207957	AT2TE77560	.	+	BRODYAGA2	MuDR	DNA	331	short	525	high	13574203	chromoarm	134	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	17207957	17208609	AT2TE77565	.	-	ATREP1	Helitron	RC	652	short	498	high	13574534	chromoarm	465	no-CHH	no-CHH	.	.	.	.	.
Chr2	17216813	17217059	AT2TE77600	.	-	ATCOPIA67	Copia	LTR	246	short	15	low	13583390	chromoarm	521	no-CHH	no-CHH	.	.	.	.	.
Chr2	17241259	17242200	AT2TE77720	.	+	ATREP10D	Helitron	RC	941	short	1295	high	13607836	chromoarm	1056	no-CHH	no-CHH	.	.	.	.	.
Chr2	17253100	17255275	AT2TE77780	.	-	ATREP3	Helitron	RC	2175	medium	1439	high	13619677	chromoarm	214	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	17255275	17255373	AT2TE77785	.	-	HELITRONY1E	Helitron	RC	98	tiny	447	high	13621852	chromoarm	2042	no-CHH	no-CHH	.	.	.	.	.
Chr2	17255825	17255985	AT2TE77790	.	+	TAG2	HAT	DNA	160	short	86	medium	13622402	chromoarm	1430	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	17256001	17256671	AT2TE77795	.	-	SIMPLEGUY1	Harbinger	DNA	670	short	116	medium	13622578	chromoarm	744	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	17256671	17256833	AT2TE77800	.	+	TAG2	HAT	DNA	162	short	86	medium	13623248	chromoarm	582	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	17274416	17274631	AT2TE77890	.	+	TAG3N1	HAT	DNA	215	short	97	medium	13640993	chromoarm	351	no-CHH	no-CHH	.	.	.	.	.
Chr2	17274631	17275235	AT2TE77895	.	+	TAG1	HAT	DNA	604	short	28	low	13641208	chromoarm	355	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	17275235	17275537	AT2TE77900	.	-	ATREP9	Helitron	RC	302	short	201	high	13641812	chromoarm	53	no-CHH	no-CHH	.	.	.	.	.
Chr2	17277612	17277925	AT2TE77910	.	-	ATHATN2	HAT	DNA	314	short	46	low	13644188	chromoarm	264	.	.	.	.	.	.	.
Chr2	17298835	17299280	AT2TE78020	.	-	HELITRONY1B	Helitron	RC	445	short	414	high	13665412	chromoarm	106	no-CHH	no-CHH	.	.	.	.	.
Chr2	17299280	17299406	AT2TE78025	.	-	ATREP10D	Helitron	RC	126	short	1295	high	13665857	chromoarm	551	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	17299406	17301578	AT2TE78030	.	+	ATREP10D	Helitron	RC	2172	medium	1295	high	13665983	chromoarm	183	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	17337766	17342489	AT2TE78210	.	+	TA11	L1	LINE	4723	medium	157	medium	13704343	chromoarm	587	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	17338956	17339000	AT2TE78215	.	+	TA11	L1	LINE	44	tiny	157	medium	13705533	chromoarm	1777	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	17342489	17342656	AT2TE78225	.	+	TA11	L1	LINE	167	short	157	medium	13709066	chromoarm	943	no-RdDM	no-RdDM	.	.	.	.	.
Chr2	17362654	17362821	AT2TE78320	.	+	ATSINE2A	.	SINE	167	short	33	low	13729231	chromoarm	263	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	17378887	17379024	AT2TE78400	.	-	ATENSPM6	En-Spm	DNA	137	short	151	medium	13745464	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	17410494	17410622	AT2TE78560	.	+	TNAT1A	.	DNA	128	short	162	medium	13777071	chromoarm	339	no-CHH	no-CHH	.	.	.	.	.
Chr2	17417946	17419429	AT2TE78600	.	-	ATLINE1A	L1	LINE	1483	short	289	high	13784523	chromoarm	1068	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	17483664	17485208	AT2TE78930	.	+	META1	Copia	LTR	1544	short	138	medium	13850241	chromoarm	3312	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	17486160	17486367	AT2TE78935	.	-	ATREP3	Helitron	RC	207	short	1439	high	13852737	chromoarm	4984	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	17486367	17487161	AT2TE78940	.	-	ATREP4	Helitron	RC	794	short	832	high	13852944	chromoarm	4190	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	17487162	17489023	AT2TE78945	.	+	ATDNAI27T9C	MuDR	DNA	1861	short	108	medium	13853739	chromoarm	2328	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	17489025	17489294	AT2TE78950	.	+	ATREP19	.	DNA	269	short	189	medium	13855602	chromoarm	2057	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr2	17516284	17516387	AT2TE79090	.	+	VANDAL6	MuDR	DNA	103	short	89	medium	13882861	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	17541113	17541788	AT2TE79220	.	-	ATREP11	Helitron	RC	675	short	841	high	13907690	chromoarm	767	no-CHH	no-CHH	.	.	.	.	.
Chr2	17541788	17541848	AT2TE79225	.	+	HELITRONY1D	Helitron	RC	60	tiny	756	high	13908365	chromoarm	1433	no-CHH	no-CHH	.	.	.	.	.
Chr2	17545763	17546812	AT2TE79235	.	+	SIMPLEGUY1	Harbinger	DNA	1049	short	116	medium	13912340	chromoarm	700	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	17555600	17556247	AT2TE79270	.	-	ATREP3	Helitron	RC	647	short	1439	high	13922177	chromoarm	125	no-CHH	no-CHH	.	.	.	.	.
Chr2	17558952	17559748	AT2TE79280	.	-	ATREP11	Helitron	RC	796	short	841	high	13925529	chromoarm	462	no-CHH	no-CHH	.	.	.	.	.
Chr2	17583626	17583933	AT2TE79400	.	-	ATENSPM6	En-Spm	DNA	307	short	151	medium	13950203	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	17637792	17637829	AT2TE79670	.	+	HELITRONY1E	Helitron	RC	37	tiny	447	high	14004369	chromoarm	170	no-CHH	no-CHH	.	.	.	.	.
Chr2	17637845	17638624	AT2TE79675	.	-	ATREP10D	Helitron	RC	779	short	1295	high	14004422	chromoarm	223	no-CHH	no-CHH	.	.	.	.	.
Chr2	17638624	17638712	AT2TE79680	.	+	HELITRONY1B	Helitron	RC	88	tiny	414	high	14005201	chromoarm	532	no-CHH	no-CHH	.	.	.	.	.
Chr2	17679413	17679742	AT2TE79890	.	-	ATTIRX1A	.	DNA	329	short	63	medium	14045990	chromoarm	144	no-CHH	no-CHH	.	.	.	.	.
Chr2	17701343	17701422	AT2TE80000	.	+	HARBINGER	Harbinger	DNA	79	tiny	90	medium	14067920	chromoarm	117	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	17724743	17725086	AT2TE80120	.	+	ATREP5	Helitron	RC	343	short	624	high	14091320	chromoarm	3768	no-CHH	no-CHH	.	.	.	.	.
Chr2	17764714	17765329	AT2TE80320	.	-	ATREP11	Helitron	RC	615	short	841	high	14131291	chromoarm	200	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	17766284	17766668	AT2TE80325	.	-	VANDAL17	MuDR	DNA	384	short	178	medium	14132861	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	17798396	17798524	AT2TE80480	.	-	ATCOPIA8B	Copia	LTR	128	short	8	low	14164973	chromoarm	110	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	17811580	17811655	AT2TE80550	.	-	ATIS112A	Harbinger	DNA	75	tiny	173	medium	14178157	chromoarm	680	no-CHH	no-CHH	.	.	.	.	.
Chr2	17835234	17835637	AT2TE80670	.	+	VANDAL17	MuDR	DNA	403	short	178	medium	14201811	chromoarm	587	no-CHH	no-CHH	ExpressedAndAnnotated	17835705	17834816	-	transcript_id-"0483134f-14d5-479e-b39e-729c8805e6e9|22"
Chr2	17890550	17891496	AT2TE80950	.	-	ATREP10D	Helitron	RC	946	short	1295	high	14257127	chromoarm	270	no-CHH	no-CHH	.	.	.	.	.
Chr2	17904166	17904193	AT2TE81010	.	-	ATREP3	Helitron	RC	27	tiny	1439	high	14270743	chromoarm	0	no-CHH	no-RdDM	.	.	.	.	.
Chr2	17904193	17905467	AT2TE81015	.	-	ATREP11	Helitron	RC	1274	short	841	high	14270770	chromoarm	19	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	17905467	17905644	AT2TE81020	.	+	HELITRONY3	Helitron	RC	177	short	1399	high	14272044	chromoarm	1293	no-CHH	no-CHH	.	.	.	.	.
Chr2	17905644	17905795	AT2TE81025	.	-	ATREP4	Helitron	RC	151	short	832	high	14272221	chromoarm	1470	no-CHH	no-CHH	.	.	.	.	.
Chr2	17910088	17910143	AT2TE81040	.	-	HELITRONY1D	Helitron	RC	55	tiny	756	high	14276665	chromoarm	371	no-CHH	no-CHH	.	.	.	.	.
Chr2	17910143	17910530	AT2TE81045	.	-	BRODYAGA1A	MuDR	DNA	387	short	586	high	14276720	chromoarm	426	no-CHH	no-CHH	.	.	.	.	.
Chr2	17914063	17914112	AT2TE81055	.	-	HELITRON2	Helitron	RC	49	tiny	194	medium	14280640	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	17942612	17943018	AT2TE81190	.	+	BRODYAGA1A	MuDR	DNA	406	short	586	high	14309189	chromoarm	2874	no-CHH	no-CHH	.	.	.	.	.
Chr2	17992264	17992544	AT2TE81440	.	-	ATREP14	Helitron	RC	280	short	47	low	14358841	chromoarm	309	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	17992544	17993276	AT2TE81445	.	-	ATREP2A	Helitron	RC	732	short	116	medium	14359121	chromoarm	589	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	18016620	18017177	AT2TE81560	.	-	ATREP15	Helitron	RC	557	short	1003	high	14383197	chromoarm	423	no-CHH	no-CHH	.	.	.	.	.
Chr2	18041931	18042151	AT2TE81690	.	+	ATDNATA1	Mariner	DNA	220	short	28	low	14408508	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	18043464	18043567	AT2TE81695	.	-	HELITRONY1C	Helitron	RC	103	short	120	medium	14410041	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	18083598	18083862	AT2TE81890	.	-	ATTIRX1A	.	DNA	264	short	63	medium	14450175	chromoarm	849	no-CHH	no-CHH	.	.	.	.	.
Chr2	18091978	18092230	AT2TE81930	.	-	ATREP16	MuDR	DNA	252	short	47	low	14458555	chromoarm	1723	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	18106653	18107024	AT2TE82000	.	+	RathE2_cons	.	RathE2_cons	371	short	74	medium	14473230	chromoarm	779	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	18136862	18137127	AT2TE82150	.	-	HARBINGER	Harbinger	DNA	265	short	90	medium	14503439	chromoarm	215	no-CHH	no-CHH	.	.	.	.	.
Chr2	18187088	18187974	AT2TE82400	.	-	ATREP3	Helitron	RC	886	short	1439	high	14553665	chromoarm	137	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	18233998	18234408	AT2TE82630	.	-	BRODYAGA2	MuDR	DNA	410	short	525	high	14600575	chromoarm	1529	no-CHH	no-CHH	.	.	.	.	.
Chr2	18235833	18236788	AT2TE82635	.	+	HELITRONY1A	Helitron	RC	955	short	271	high	14602410	chromoarm	937	no-CHH	no-CHH	.	.	.	.	.
Chr2	18267691	18268487	AT2TE82790	.	+	BRODYAGA2	MuDR	DNA	796	short	525	high	14634268	chromoarm	300	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	18268488	18268523	AT2TE82795	.	-	ATHPOGON1	Pogo	DNA	36	tiny	174	medium	14635064	chromoarm	264	.	.	.	.	.	.	.
Chr2	18268523	18268591	AT2TE82800	.	+	HELITRON2	Helitron	RC	68	tiny	194	medium	14635100	chromoarm	196	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	18288522	18288580	AT2TE82900	.	+	ATDNA2T9A	MuDR	DNA	58	tiny	48	low	14655099	chromoarm	275	no-CHH	no-CHH	.	.	.	.	.
Chr2	18288580	18293391	AT2TE82905	.	+	ATREP10D	Helitron	RC	4811	medium	1295	high	14655157	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	18289902	18289968	AT2TE82910	.	-	ATTIR16T3A	.	DNA	66	tiny	106	medium	14656479	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	18292354	18292554	AT2TE82920	.	+	HELITRONY1E	Helitron	RC	200	short	447	high	14658931	chromoarm	150	no-CHH	no-CHH	.	.	.	.	.
Chr2	18293391	18293458	AT2TE82925	.	+	HELITRONY1E	Helitron	RC	67	tiny	447	high	14659968	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	18315116	18315634	AT2TE83030	.	-	ATREP4	Helitron	RC	518	short	832	high	14681693	chromoarm	271	no-CHH	no-CHH	.	.	.	.	.
Chr2	18338920	18339015	AT2TE83150	.	+	ATDNAI27T9B	MuDR	DNA	95	tiny	43	low	14705497	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	18350164	18350406	AT2TE83210	.	-	ATREP3	Helitron	RC	242	short	1439	high	14716741	chromoarm	338	no-CHH	no-CHH	.	.	.	.	.
Chr2	18351723	18351925	AT2TE83215	.	-	ATCOPIA43	Copia	LTR	202	short	29	low	14718300	chromoarm	1897	no-CHH	no-CHH	.	.	.	.	.
Chr2	18352934	18353327	AT2TE83220	.	-	BRODYAGA1A	MuDR	DNA	393	short	586	high	14719511	chromoarm	930	no-CHH	no-CHH	.	.	.	.	.
Chr2	18353682	18353916	AT2TE83225	.	-	ATLINE1_4	L1	LINE	235	short	102	medium	14720258	chromoarm	341	.	.	.	.	.	.	.
Chr2	18391361	18391517	AT2TE83410	.	+	ATTIRX1C	.	DNA	156	short	39	low	14757938	chromoarm	219	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr2	18393936	18394213	AT2TE83420	.	+	ATDNA2T9C	MuDR	DNA	277	short	242	high	14760513	chromoarm	211	no-CHH	no-CHH	.	.	.	.	.
Chr2	18398701	18398912	AT2TE83440	.	+	HELITRONY3A	Helitron	RC	211	short	49	low	14765278	chromoarm	268	no-CHH	no-CHH	.	.	.	.	.
Chr2	18446884	18447474	AT2TE83680	.	+	HELITRONY3	Helitron	RC	590	short	1399	high	14813461	chromoarm	7	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	18482133	18482674	AT2TE83860	.	+	ATREP10D	Helitron	RC	541	short	1295	high	14848710	chromoarm	1965	no-CHH	no-CHH	.	.	.	.	.
Chr2	18528229	18528606	AT2TE84090	.	+	ATREP4	Helitron	RC	377	short	832	high	14894806	chromoarm	98	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	18528985	18529610	AT2TE84095	.	+	ATREP11	Helitron	RC	625	short	841	high	14895562	chromoarm	89	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	18538348	18538556	AT2TE84130	.	-	HELITRONY3	Helitron	RC	208	short	1399	high	14904925	chromoarm	167	no-CHH	no-RdDM	.	.	.	.	.
Chr2	18538556	18538848	AT2TE84135	.	+	DT1	Mariner	DNA	292	short	123	medium	14905133	chromoarm	375	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr2	18538848	18539384	AT2TE84140	.	-	ATREP11	Helitron	RC	536	short	841	high	14905425	chromoarm	667	no-CHH	no-RdDM	.	.	.	.	.
Chr2	18561893	18562133	AT2TE84250	.	+	ATIS112A	Harbinger	DNA	240	short	173	medium	14928470	chromoarm	272	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	18563616	18563809	AT2TE84255	.	+	ATIS112A	Harbinger	DNA	193	short	173	medium	14930193	chromoarm	346	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	18564209	18564761	AT2TE84260	.	+	ATENSPM1A	En-Spm	DNA	552	short	77	medium	14930786	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	18593540	18594158	AT2TE84410	.	+	HELITRONY1D	Helitron	RC	618	short	756	high	14960117	chromoarm	1097	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr2	18594858	18595311	AT2TE84415	.	+	SIMPLEGUY1	Harbinger	DNA	453	short	116	medium	14961435	chromoarm	36	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	18621403	18621938	AT2TE84540	.	-	ATREP4	Helitron	RC	535	short	832	high	14987980	chromoarm	813	no-CHH	no-CHH	.	.	.	.	.
Chr2	18651687	18651802	AT2TE84690	.	-	TA11	L1	LINE	115	short	157	medium	15018264	chromoarm	4256	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	18652625	18655464	AT2TE84695	.	-	ATLINE1_4	L1	LINE	2839	medium	102	medium	15019202	chromoarm	594	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	18655464	18655499	AT2TE84700	.	-	ATLINE1_6	L1	LINE	35	tiny	129	medium	15022041	chromoarm	559	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr2	18675675	18675847	AT2TE84800	.	-	ATTIRTA1	Tc1	DNA	172	short	95	medium	15042252	chromoarm	86	no-CHH	no-CHH	.	.	.	.	.
Chr2	18682286	18682433	AT2TE84830	.	+	ARNOLD1	MuDR	DNA	147	short	39	low	15048863	chromoarm	218	no-CHH	no-RdDM	LowExpressed	.	.	.	.
Chr2	18697440	18697920	AT2TE84910	.	-	ATREP3	Helitron	RC	480	short	1439	high	15064017	chromoarm	698	no-CHH	no-CHH	.	.	.	.	.
Chr2	18703674	18703729	AT2TE84940	.	+	ATLINEIII	L1	LINE	55	tiny	196	medium	15070251	chromoarm	230	no-CHH	no-CHH	.	.	.	.	.
Chr2	18709049	18709116	AT2TE84970	.	+	ATCOPIA57	Copia	LTR	67	tiny	48	low	15075626	chromoarm	420	no-CHH	no-CHH	.	.	.	.	.
Chr2	18709116	18709168	AT2TE84975	.	+	ATCOPIA57	Copia	LTR	52	tiny	48	low	15075693	chromoarm	368	no-CHH	no-CHH	.	.	.	.	.
Chr2	18709168	18711006	AT2TE84980	.	+	ATCOPIA57	Copia	LTR	1838	short	48	low	15075745	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	18711006	18711055	AT2TE84985	.	+	ATCOPIA57	Copia	LTR	49	tiny	48	low	15077583	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	18721925	18722651	AT2TE85040	.	+	ATREP4	Helitron	RC	726	short	832	high	15088502	chromoarm	1480	no-CHH	no-CHH	.	.	.	.	.
Chr2	18803173	18803341	AT2TE85450	.	-	BRODYAGA1A	MuDR	DNA	168	short	586	high	15169750	chromoarm	1111	no-CHH	no-CHH	.	.	.	.	.
Chr2	18853666	18854301	AT2TE85710	.	-	HELITRONY2	Helitron	RC	635	short	198	medium	15220243	chromoarm	264	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	18855208	18853651	-	transcript_id-"3c51d541-7a04-4e5f-b8ba-a5937b2fb5f2|3"
Chr2	18868416	18868940	AT2TE85780	.	-	HELITRON4	Helitron	RC	524	short	199	medium	15234993	chromoarm	72	no-CHH	no-CHH	.	.	.	.	.
Chr2	18868940	18869019	AT2TE85785	.	+	ATREP3	Helitron	RC	79	tiny	1439	high	15235517	chromoarm	266	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr2	18873668	18873794	AT2TE85800	.	-	LIMPET1	MuDR	DNA	126	short	116	medium	15240245	chromoarm	211	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	18890617	18890819	AT2TE85890	.	-	ATHATN3	HAT	DNA	202	short	70	medium	15257194	chromoarm	1943	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	18898404	18898480	AT2TE85930	.	+	VANDAL13	MuDR	DNA	76	tiny	38	low	15264981	chromoarm	192	no-CHH	no-CHH	.	.	.	.	.
Chr2	18923097	18923159	AT2TE86050	.	+	ATDNAI27T9A	MuDR	DNA	62	tiny	116	medium	15289674	chromoarm	144	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr2	18933628	18933985	AT2TE86100	.	-	TA11	L1	LINE	357	short	157	medium	15300205	chromoarm	207	no-CHH	no-CHH	.	.	.	.	.
Chr2	18938589	18939242	AT2TE86120	.	-	ATREP3	Helitron	RC	653	short	1439	high	15305166	chromoarm	19	no-CHH	no-CHH	.	.	.	.	.
Chr2	18957694	18957944	AT2TE86210	.	+	RP1_AT	.	DNA	250	short	87	medium	15324271	chromoarm	25	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	18957204	18957907	+	transcript_id-"36af8027-cc1c-43b2-8504-f13f604a161f|3"
Chr2	18958439	18958875	AT2TE86215	.	-	HELITRONY3	Helitron	RC	436	short	1399	high	15325016	chromoarm	287	no-CHH	no-CHH	.	.	.	.	.
Chr2	18958875	18959012	AT2TE86220	.	-	ATREP3	Helitron	RC	137	short	1439	high	15325452	chromoarm	150	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	18993456	18993564	AT2TE86390	.	+	HELITRONY3	Helitron	RC	108	short	1399	high	15360033	chromoarm	255	no-CHH	no-CHH	.	.	.	.	.
Chr2	18993564	18993638	AT2TE86395	.	-	HELITRONY1E	Helitron	RC	74	tiny	447	high	15360141	chromoarm	363	no-CHH	no-CHH	.	.	.	.	.
Chr2	18993639	18994417	AT2TE86400	.	+	ATREP3	Helitron	RC	779	short	1439	high	15360215	chromoarm	437	.	.	.	.	.	.	.
Chr2	19018621	19018770	AT2TE86520	.	-	ATDNAI27T9A	MuDR	DNA	149	short	116	medium	15385198	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	19131363	19132227	AT2TE87090	.	-	HELITRONY1A	Helitron	RC	864	short	271	high	15497940	chromoarm	850	no-CHH	no-CHH	.	.	.	.	.
Chr2	19160616	19160733	AT2TE87230	.	-	BRODYAGA1A	MuDR	DNA	117	short	586	high	15527193	chromoarm	2574	no-CHH	no-CHH	.	.	.	.	.
Chr2	19160733	19161445	AT2TE87235	.	+	BRODYAGA2	MuDR	DNA	712	short	525	high	15527310	chromoarm	2691	no-CHH	no-CHH	.	.	.	.	.
Chr2	19162601	19163647	AT2TE87240	.	+	ATREP10B	Helitron	RC	1046	short	491	high	15529178	chromoarm	941	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	19171705	19172073	AT2TE87280	.	-	ATREP1	Helitron	RC	368	short	498	high	15538282	chromoarm	4932	no-CHH	no-CHH	.	.	.	.	.
Chr2	19172073	19172665	AT2TE87285	.	-	ATREP2	Helitron	RC	592	short	164	medium	15538650	chromoarm	5300	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	19172665	19172892	AT2TE87290	.	-	HELITRONY1E	Helitron	RC	227	short	447	high	15539242	chromoarm	5892	no-CHH	no-CHH	.	.	.	.	.
Chr2	19180040	19180550	AT2TE87330	.	-	HELITRONY3	Helitron	RC	510	short	1399	high	15546617	chromoarm	353	no-CHH	no-CHH	.	.	.	.	.
Chr2	19189814	19190601	AT2TE87380	.	-	ATREP4	Helitron	RC	787	short	832	high	15556391	chromoarm	1503	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	19195152	19195237	AT2TE87400	.	-	HELITRONY1E	Helitron	RC	85	tiny	447	high	15561729	chromoarm	496	no-CHH	no-CHH	.	.	.	.	.
Chr2	19195237	19195777	AT2TE87405	.	-	ATREP11	Helitron	RC	540	short	841	high	15561814	chromoarm	581	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	19195778	19195951	AT2TE87410	.	+	ATHATN7	HAT	DNA	174	short	71	medium	15562354	chromoarm	1121	.	.	.	.	.	.	.
Chr2	19195951	19196956	AT2TE87415	.	-	ATREP3	Helitron	RC	1005	short	1439	high	15562528	chromoarm	1295	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	19196956	19197374	AT2TE87420	.	-	ATREP10D	Helitron	RC	418	short	1295	high	15563533	chromoarm	1446	no-CHH	no-CHH	.	.	.	.	.
Chr2	19224888	19226034	AT2TE87560	.	-	ATREP3	Helitron	RC	1146	short	1439	high	15591465	chromoarm	2066	no-CHH	no-CHH	.	.	.	.	.
Chr2	19235686	19237227	AT2TE87610	.	-	ARNOLDY1	MuDR	DNA	1541	short	237	high	15602263	chromoarm	785	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr2	19242628	19243132	AT2TE87640	.	-	ATREP2	Helitron	RC	504	short	164	medium	15609205	chromoarm	255	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	19243132	19243487	AT2TE87645	.	-	HELITRONY1E	Helitron	RC	355	short	447	high	15609709	chromoarm	241	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	19257628	19257762	AT2TE87710	.	+	ATHPOGON1	Pogo	DNA	134	short	174	medium	15624205	chromoarm	2568	no-CHH	no-CHH	.	.	.	.	.
Chr2	19262227	19262544	AT2TE87730	.	-	BRODYAGA1A	MuDR	DNA	317	short	586	high	15628804	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	19268284	19269233	AT2TE87760	.	+	ATREP10D	Helitron	RC	949	short	1295	high	15634861	chromoarm	150	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	19269233	19269293	AT2TE87765	.	-	ATREP3	Helitron	RC	60	tiny	1439	high	15635810	chromoarm	384	no-CHH	no-CHH	.	.	.	.	.
Chr2	19305224	19305642	AT2TE87940	.	-	BRODYAGA1A	MuDR	DNA	418	short	586	high	15671801	chromoarm	1795	no-CHH	no-CHH	.	.	.	.	.
Chr2	19322434	19322500	AT2TE88030	.	-	ATREP5	Helitron	RC	66	tiny	624	high	15689011	chromoarm	155	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	19322500	19323957	AT2TE88035	.	+	ATREP10D	Helitron	RC	1457	short	1295	high	15689077	chromoarm	221	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr2	19326593	19327314	AT2TE88045	.	-	HELITRONY3	Helitron	RC	721	short	1399	high	15693170	chromoarm	325	no-CHH	no-CHH	.	.	.	.	.
Chr2	19354388	19354716	AT2TE88180	.	-	BRODYAGA1A	MuDR	DNA	329	short	586	high	15720964	chromoarm	1273	.	.	.	.	.	.	.
Chr2	19413740	19414843	AT2TE88480	.	-	ATREP14	Helitron	RC	1103	short	47	low	15780317	chromoarm	1691	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	19433252	19433558	AT2TE88570	.	-	ATMU7	MuDR	DNA	306	short	32	low	15799829	chromoarm	236	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr2	19463681	19464917	AT2TE88720	.	-	HELITRONY3	Helitron	RC	1236	short	1399	high	15830258	chromoarm	559	no-CHH	no-CHH	.	.	.	.	.
Chr2	19514885	19515164	AT2TE88970	.	-	ATHPOGON3	Pogo	DNA	279	short	118	medium	15881462	chromoarm	733	no-CHH	no-CHH	.	.	.	.	.
Chr2	19521462	19521785	AT2TE89000	.	-	ATREP1	Helitron	RC	323	short	498	high	15888039	chromoarm	102	no-CHH	no-CHH	.	.	.	.	.
Chr2	19527622	19527700	AT2TE89030	.	-	ATREP4	Helitron	RC	78	tiny	832	high	15894199	chromoarm	794	no-CHH	no-CHH	.	.	.	.	.
Chr2	19527700	19527733	AT2TE89035	.	+	ATREP10A	Helitron	RC	33	tiny	279	high	15894277	chromoarm	872	no-CHH	no-CHH	.	.	.	.	.
Chr2	19527733	19529185	AT2TE89040	.	+	ATREP10B	Helitron	RC	1452	short	491	high	15894310	chromoarm	668	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	19529185	19529213	AT2TE89045	.	+	ATREP10B	Helitron	RC	28	tiny	491	high	15895762	chromoarm	640	no-CHH	no-CHH	.	.	.	.	.
Chr2	19584271	19584873	AT2TE89320	.	-	ATREP10D	Helitron	RC	602	short	1295	high	15950848	chromoarm	851	no-CHH	no-CHH	.	.	.	.	.
Chr2	19585629	19585830	AT2TE89325	.	+	BRODYAGA1A	MuDR	DNA	201	short	586	high	15952206	chromoarm	2209	no-CHH	no-CHH	.	.	.	.	.
Chr2	19618008	19618083	AT2TE89480	.	+	VANDAL13	MuDR	DNA	75	tiny	38	low	15984585	chromoarm	288	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr2	19623023	19623096	AT2TE89510	.	+	ATREP1	Helitron	RC	73	tiny	498	high	15989600	chromoarm	859	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr2	19623096	19623647	AT2TE89515	.	+	ATREP2	Helitron	RC	551	short	164	medium	15989673	chromoarm	632	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	19623647	19623732	AT2TE89520	.	+	ATREP3	Helitron	RC	85	tiny	1439	high	15990224	chromoarm	547	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr2	19625926	19626024	AT2TE89530	.	+	ATHILA7	Gypsy	LTR	98	tiny	134	medium	15992503	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr2	19629360	19629469	AT2TE89540	.	+	AT9TSD1	MuDR	DNA	109	short	55	medium	15995937	chromoarm	55	no-CHH	no-CHH	.	.	.	.	.
Chr2	19670280	19670383	AT2TE89750	.	-	ATHATN7	HAT	DNA	103	short	71	medium	16036857	chromoarm	551	no-CHH	no-CHH	.	.	.	.	.
Chr2	19697433	19697465	AT2TE89890	.	+	ATREP18	.	DNA	32	tiny	391	high	16064010	chromoarm	824	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr3	322	362	AT3TE00010	.	-	ATREP18	.	DNA	40	tiny	391	high	13589395	chromoarm	321	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	28596	29097	AT3TE00130	.	-	ATMU6N1	MuDR	DNA	501	short	39	low	13560660	chromoarm	0	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	42813	42844	AT3TE00190	.	-	RP1_AT	.	DNA	32	tiny	87	medium	13546913	chromoarm	947	.	.	.	.	.	.	.
Chr3	42844	43071	AT3TE00195	.	-	RP1_AT	.	DNA	227	short	87	medium	13546686	chromoarm	979	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	74309	75008	AT3TE00320	.	+	ATREP5	Helitron	RC	699	short	624	high	13514749	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	81640	81852	AT3TE00350	.	+	ATCOPIA24	Copia	LTR	212	short	27	low	13507905	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	115538	115899	AT3TE00490	.	-	ATREP5	Helitron	RC	361	short	624	high	13473858	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	155944	156070	AT3TE00660	.	+	ATCOPIA14	Copia	LTR	126	short	7	low	13433687	chromoarm	505	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	156732	156970	AT3TE00665	.	+	ATREP10A	Helitron	RC	238	short	279	high	13432787	chromoarm	1293	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	156970	158138	AT3TE00670	.	+	ATREP10D	Helitron	RC	1168	short	1295	high	13431619	chromoarm	1531	RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr3	158138	158337	AT3TE00675	.	+	ATREP4	Helitron	RC	199	short	832	high	13431420	chromoarm	1351	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	183648	184040	AT3TE00780	.	-	ATMU6N1	MuDR	DNA	392	short	39	low	13405717	chromoarm	0	no-CHH	no-CHH	ExpressedAndAnnotated	184413	182498	-	transcript_id-"ade2ed54-312c-461b-b171-def5dc30818e|39"
Chr3	326215	326270	AT3TE01390	.	-	ATDNAI27T9C	MuDR	DNA	55	tiny	108	medium	13263487	chromoarm	343	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	414627	415294	AT3TE01770	.	-	ATREP10D	Helitron	RC	667	short	1295	high	13174463	chromoarm	168	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	422485	423446	AT3TE01800	.	-	ATREP1	Helitron	RC	961	short	498	high	13166311	chromoarm	738	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	422656	423210	AT3TE01805	.	-	ATREP2	Helitron	RC	554	short	164	medium	13166547	chromoarm	974	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	423446	423504	AT3TE01810	.	-	ATREP11	Helitron	RC	58	tiny	841	high	13166253	chromoarm	680	no-CHH	no-CHH	.	.	.	.	.
Chr3	490909	491312	AT3TE02100	.	-	VANDAL17	MuDR	DNA	403	short	178	medium	13098445	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	495447	495957	AT3TE02110	.	-	ATREP9	Helitron	RC	510	short	201	high	13093800	chromoarm	221	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	495957	496019	AT3TE02115	.	+	HELITRONY1D	Helitron	RC	62	tiny	756	high	13093738	chromoarm	159	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	525369	526255	AT3TE02240	.	+	SADHU	.	Unassigned	886	short	16	low	13063502	chromoarm	544	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	538809	539326	AT3TE02290	.	-	ATREP5	Helitron	RC	517	short	624	high	13050431	chromoarm	697	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	558077	558300	AT3TE02370	.	+	ATIS112A	Harbinger	DNA	223	short	173	medium	13031457	chromoarm	619	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	572562	573385	AT3TE02430	.	-	ATREP10D	Helitron	RC	823	short	1295	high	13016372	chromoarm	563	no-CHH	no-CHH	.	.	.	.	.
Chr3	573385	573533	AT3TE02435	.	-	BRODYAGA1	MuDR	DNA	148	short	251	high	13016224	chromoarm	415	no-CHH	no-CHH	.	.	.	.	.
Chr3	623526	623598	AT3TE02640	.	-	ATCOPIA68	Copia	LTR	72	tiny	43	low	12966159	chromoarm	53	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	662390	662843	AT3TE02810	.	-	ATREP19	.	DNA	453	short	189	medium	12926914	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	681408	681558	AT3TE02890	.	-	ATHILA7	Gypsy	LTR	150	short	134	medium	12908199	chromoarm	128	no-CHH	no-CHH	ExpressedAndAnnotated	680895	681925	+	transcript_id-"f9d5e113-cdb7-4999-9896-9a6da56c7425|4"
Chr3	708328	708772	AT3TE03000	.	+	HELITRONY1D	Helitron	RC	444	short	756	high	12880985	chromoarm	193	no-CHH	no-CHH	.	.	.	.	.
Chr3	719508	720015	AT3TE03050	.	-	HELITRONY3	Helitron	RC	507	short	1399	high	12869742	chromoarm	594	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	720015	720234	AT3TE03055	.	+	ATREP3	Helitron	RC	219	short	1439	high	12869523	chromoarm	1101	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	754697	755152	AT3TE03200	.	+	ATREP11	Helitron	RC	455	short	841	high	12834605	chromoarm	203	no-CHH	no-CHH	.	.	.	.	.
Chr3	759247	760313	AT3TE03210	.	-	HELITRONY3	Helitron	RC	1066	short	1399	high	12829444	chromoarm	13	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	786330	786436	AT3TE03320	.	-	ATDNAI27T9A	MuDR	DNA	106	short	116	medium	12803321	chromoarm	2	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	840601	840732	AT3TE03550	.	-	ATREP10A	Helitron	RC	131	short	279	high	12749025	chromoarm	90	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	840732	841103	AT3TE03555	.	-	ATTIRX1A	.	DNA	371	short	63	medium	12748654	chromoarm	221	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	841103	841723	AT3TE03560	.	+	HELITRONY1E	Helitron	RC	620	short	447	high	12748034	chromoarm	592	no-CHH	no-CHH	.	.	.	.	.
Chr3	842361	842474	AT3TE03565	.	+	ATLINE1A	L1	LINE	113	short	289	high	12747283	chromoarm	211	no-CHH	no-CHH	.	.	.	.	.
Chr3	845415	845511	AT3TE03575	.	+	ATLINEIII	L1	LINE	97	tiny	196	medium	12744246	chromoarm	444	.	.	.	.	.	.	.
Chr3	864092	864427	AT3TE03650	.	-	ATTIRX1D	.	DNA	335	short	28	low	12725330	chromoarm	749	no-CHH	no-CHH	.	.	.	.	.
Chr3	886516	886909	AT3TE03740	.	-	HELITRON4	Helitron	RC	393	short	199	medium	12702848	chromoarm	350	no-CHH	no-CHH	.	.	.	.	.
Chr3	908063	908222	AT3TE03830	.	-	ATENSPM1A	En-Spm	DNA	159	short	77	medium	12681535	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	928964	929083	AT3TE03920	.	-	ATLINE1_3A	L1	LINE	119	short	160	medium	12660674	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	934547	934978	AT3TE03940	.	-	ARNOLDY1	MuDR	DNA	431	short	237	high	12654779	chromoarm	83	no-CHH	no-CHH	.	.	.	.	.
Chr3	985156	986226	AT3TE04150	.	+	ATREP10D	Helitron	RC	1070	short	1295	high	12603531	chromoarm	1678	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	986242	986440	AT3TE04155	.	+	ATDNAI27T9C	MuDR	DNA	198	short	108	medium	12603317	chromoarm	2764	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	1051522	1051926	AT3TE04430	.	+	ATREP1	Helitron	RC	404	short	498	high	12537831	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	1056312	1056773	AT3TE04440	.	-	ATDNA2T9C	MuDR	DNA	461	short	242	high	12532984	chromoarm	1360	no-CHH	no-CHH	.	.	.	.	.
Chr3	1057570	1057922	AT3TE04445	.	-	ATREP5	Helitron	RC	352	short	624	high	12531835	chromoarm	2618	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	1058324	1058416	AT3TE04450	.	-	ARNOLD3	MuDR	DNA	92	tiny	45	low	12531341	chromoarm	3156	no-CHH	no-CHH	.	.	.	.	.
Chr3	1063299	1063944	AT3TE04470	.	-	ATREP11	Helitron	RC	645	short	841	high	12525813	chromoarm	323	no-CHH	no-CHH	.	.	.	.	.
Chr3	1065338	1065456	AT3TE04475	.	+	DT1	Mariner	DNA	118	short	123	medium	12524301	chromoarm	2362	no-CHH	no-CHH	.	.	.	.	.
Chr3	1074147	1074909	AT3TE04510	.	-	HELITRONY1B	Helitron	RC	762	short	414	high	12514848	chromoarm	116	no-CHH	no-CHH	.	.	.	.	.
Chr3	1095880	1096299	AT3TE04600	.	+	HELITRONY1D	Helitron	RC	419	short	756	high	12493458	chromoarm	264	no-CHH	no-CHH	.	.	.	.	.
Chr3	1102861	1103303	AT3TE04630	.	-	BRODYAGA1	MuDR	DNA	442	short	251	high	12486454	chromoarm	114	no-CHH	no-CHH	.	.	.	.	.
Chr3	1129150	1129909	AT3TE04740	.	+	ATREP10D	Helitron	RC	759	short	1295	high	12459848	chromoarm	228	no-CHH	no-CHH	.	.	.	.	.
Chr3	1170160	1170315	AT3TE04910	.	-	ATDNAI27T9C	MuDR	DNA	155	short	108	medium	12419442	chromoarm	955	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	1170593	1170799	AT3TE04915	.	-	LIMPET1	MuDR	DNA	206	short	116	medium	12418958	chromoarm	1388	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	1170799	1170826	AT3TE04920	.	-	LIMPET1	MuDR	DNA	27	tiny	116	medium	12418931	chromoarm	1594	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	1170828	1171101	AT3TE04925	.	+	LIMPET1	MuDR	DNA	273	short	116	medium	12418656	chromoarm	1623	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	1246056	1246492	AT3TE05240	.	+	ATREP3	Helitron	RC	436	short	1439	high	12343265	chromoarm	98	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	1246668	1250395	AT3TE05245	.	+	Unassigned	.	Unassigned	3727	medium	.	low	12339362	chromoarm	366	no-CHH	no-CHH	ExpressedAndAnnotated	1250121	1250363	+	transcript_id-"173181ea-3601-4ce3-a6c9-fac9f805fa04|6"
Chr3	1283075	1283137	AT3TE05380	.	+	ATREP11	Helitron	RC	62	tiny	841	high	12306620	chromoarm	2133	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	1283137	1283991	AT3TE05385	.	-	ATREP6	Helitron	RC	854	short	181	medium	12305766	chromoarm	1699	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	1284009	1284069	AT3TE05390	.	-	ATREP8	Helitron	RC	60	tiny	75	medium	12305688	chromoarm	1621	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	1341332	1341517	AT3TE05630	.	+	ATREP15	Helitron	RC	185	short	1003	high	12248240	chromoarm	1114	no-CHH	no-CHH	.	.	.	.	.
Chr3	1341517	1341710	AT3TE05635	.	-	ATMUN1	MuDR	DNA	193	short	107	medium	12248047	chromoarm	1131	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr3	1341710	1342220	AT3TE05640	.	-	ATREP14	Helitron	RC	510	short	47	low	12247537	chromoarm	621	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	1342220	1342248	AT3TE05645	.	-	BRODYAGA1	MuDR	DNA	28	tiny	251	high	12247509	chromoarm	593	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	1342248	1342352	AT3TE05650	.	+	ATREP15	Helitron	RC	104	short	1003	high	12247405	chromoarm	489	no-CHH	no-CHH	.	.	.	.	.
Chr3	1358654	1359233	AT3TE05720	.	+	HELITRONY1B	Helitron	RC	579	short	414	high	12230524	chromoarm	597	no-CHH	no-CHH	.	.	.	.	.
Chr3	1359233	1359651	AT3TE05725	.	-	ATREP3	Helitron	RC	418	short	1439	high	12230106	chromoarm	1176	no-CHH	no-CHH	.	.	.	.	.
Chr3	1359651	1359704	AT3TE05730	.	-	ATHPOGON1	Pogo	DNA	53	tiny	174	medium	12230053	chromoarm	1284	no-CHH	no-CHH	.	.	.	.	.
Chr3	1359704	1359765	AT3TE05735	.	+	ATREP4	Helitron	RC	61	tiny	832	high	12229992	chromoarm	1223	no-CHH	no-CHH	.	.	.	.	.
Chr3	1369279	1370240	AT3TE05770	.	+	HELITRONY1D	Helitron	RC	961	short	756	high	12219517	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	1369679	1370090	AT3TE05775	.	+	ATHATN7	HAT	DNA	411	short	71	medium	12219667	chromoarm	147	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	1370246	1370316	AT3TE05780	.	-	ATREP3	Helitron	RC	70	tiny	1439	high	12219441	chromoarm	714	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	1370316	1370337	AT3TE05785	.	-	ATREP3	Helitron	RC	21	tiny	1439	high	12219420	chromoarm	784	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	1370337	1371629	AT3TE05790	.	-	ATREP3	Helitron	RC	1292	short	1439	high	12218128	chromoarm	156	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	1385513	1386060	AT3TE05850	.	-	ATHPOGON1	Pogo	DNA	547	short	174	medium	12203697	chromoarm	437	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	1386060	1386243	AT3TE05855	.	-	ATREP5	Helitron	RC	183	short	624	high	12203514	chromoarm	254	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	1388973	1389356	AT3TE05865	.	+	HELITRONY1D	Helitron	RC	383	short	756	high	12200401	chromoarm	246	no-CHH	no-CHH	.	.	.	.	.
Chr3	1410120	1410588	AT3TE05950	.	+	ATMU6N1	MuDR	DNA	468	short	39	low	12179169	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	1413149	1413432	AT3TE05960	.	+	ATENSPM6	En-Spm	DNA	283	short	151	medium	12176325	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	1434307	1434970	AT3TE06050	.	+	VANDAL17	MuDR	DNA	663	short	178	medium	12154787	chromoarm	0	no-CHH	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	1434970	1434991	AT3TE06055	.	+	VANDAL17	MuDR	DNA	21	tiny	178	medium	12154766	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	1445791	1445987	AT3TE06100	.	+	ATLINE1_6	L1	LINE	196	short	129	medium	12143770	chromoarm	2430	no-CHH	no-CHH	.	.	.	.	.
Chr3	1489859	1490079	AT3TE06290	.	+	ATMU5	MuDR	DNA	220	short	24	low	12099678	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	1499377	1499926	AT3TE06330	.	+	HELITRONY3	Helitron	RC	549	short	1399	high	12089831	chromoarm	458	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	1514898	1514975	AT3TE06390	.	+	ATCOPIA59	Copia	LTR	77	tiny	20	low	12074782	chromoarm	3	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	1539502	1539662	AT3TE06490	.	-	LIMPET1	MuDR	DNA	160	short	116	medium	12050095	chromoarm	786	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	1545045	1545365	AT3TE06510	.	-	HELITRON5	Helitron	RC	320	short	56	medium	12044392	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	1555419	1560680	AT3TE06550	.	-	ATLINE2	L1	LINE	5261	long	138	medium	12029077	chromoarm	0	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	1571075	1571366	AT3TE06590	.	-	ATREP10D	Helitron	RC	291	short	1295	high	12018391	chromoarm	38	no-CHH	no-CHH	.	.	.	.	.
Chr3	1571366	1572215	AT3TE06595	.	+	ATREP3	Helitron	RC	849	short	1439	high	12017542	chromoarm	329	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	1572215	1572550	AT3TE06600	.	+	BRODYAGA2	MuDR	DNA	335	short	525	high	12017207	chromoarm	167	no-CHH	no-CHH	.	.	.	.	.
Chr3	1572550	1572613	AT3TE06605	.	+	ATREP2A	Helitron	RC	63	tiny	116	medium	12017144	chromoarm	104	no-CHH	no-CHH	.	.	.	.	.
Chr3	1572613	1572664	AT3TE06610	.	-	ATREP10D	Helitron	RC	51	tiny	1295	high	12017093	chromoarm	53	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	1578904	1578961	AT3TE06640	.	-	ATMUN1	MuDR	DNA	57	tiny	107	medium	12010796	chromoarm	286	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	1602085	1602670	AT3TE06740	.	+	ATREP6	Helitron	RC	585	short	181	medium	11987087	chromoarm	648	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	1607056	1607551	AT3TE06750	.	+	ATLANTYS3	Gypsy	LTR	495	short	142	medium	11982206	chromoarm	0	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	1648737	1648840	AT3TE06930	.	-	ATHILA8B	Gypsy	LTR	103	short	78	medium	11940917	chromoarm	247	no-CHH	no-CHH	.	.	.	.	.
Chr3	1675478	1675609	AT3TE07040	.	-	ATHPOGON3	Pogo	DNA	131	short	118	medium	11914148	chromoarm	570	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	1675609	1676213	AT3TE07045	.	+	ATREP9	Helitron	RC	604	short	201	high	11913544	chromoarm	701	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	1676213	1676256	AT3TE07050	.	-	AT9TSD1	MuDR	DNA	43	tiny	55	medium	11913501	chromoarm	665	no-CHH	no-RdDM	.	.	.	.	.
Chr3	1702145	1702860	AT3TE07160	.	-	ATREP10D	Helitron	RC	715	short	1295	high	11886897	chromoarm	20	no-CHH	no-CHH	.	.	.	.	.
Chr3	1728291	1728789	AT3TE07270	.	+	ATREP10B	Helitron	RC	498	short	491	high	11860968	chromoarm	180	no-CHH	no-CHH	.	.	.	.	.
Chr3	1743412	1746785	AT3TE07330	.	-	Unassigned	.	Unassigned	3373	medium	.	low	11842972	chromoarm	485	no-CHH	no-CHH	ExpressedAndAnnotated	1743706	1743410	-	transcript_id-"dd013420-d021-41b0-9702-a42bf094f8ea|3"
Chr3	1752260	1753229	AT3TE07350	.	-	ATREP4	Helitron	RC	969	short	832	high	11836528	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	1753229	1753297	AT3TE07355	.	-	ATREP5	Helitron	RC	68	tiny	624	high	11836460	chromoarm	663	no-CHH	no-CHH	.	.	.	.	.
Chr3	1813944	1814091	AT3TE07610	.	-	ARNOLD2	MuDR	DNA	147	short	68	medium	11775666	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	1849191	1849337	AT3TE07760	.	+	ATSINE2A	.	SINE	146	short	33	low	11740420	chromoarm	1175	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	1871136	1871675	AT3TE07850	.	+	ATREP1	Helitron	RC	539	short	498	high	11718082	chromoarm	29	no-CHH	no-CHH	.	.	.	.	.
Chr3	1871676	1872022	AT3TE07855	.	+	VANDAL17	MuDR	DNA	346	short	178	medium	11717735	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	1872022	1872087	AT3TE07860	.	+	ATENSPM1A	En-Spm	DNA	65	tiny	77	medium	11717670	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	1886533	1886737	AT3TE07920	.	+	ATCOPIA56	Copia	LTR	204	short	16	low	11703020	chromoarm	156	no-CHH	no-CHH	.	.	.	.	.
Chr3	1912191	1912224	AT3TE08030	.	+	RathE1_cons	.	RathE1_cons	33	tiny	213	high	11677533	chromoarm	1035	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	1959159	1959415	AT3TE08230	.	-	TAT1_ATH	Gypsy	LTR	256	short	87	medium	11630342	chromoarm	919	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	1959467	1960013	AT3TE08235	.	+	VANDAL6	MuDR	DNA	546	short	89	medium	11629744	chromoarm	1227	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	1960013	1960066	AT3TE08240	.	-	TAT1_ATH	Gypsy	LTR	53	tiny	87	medium	11629691	chromoarm	1773	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	1960682	1960937	AT3TE08245	.	-	VANDAL6	MuDR	DNA	255	short	89	medium	11628820	chromoarm	2442	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	1960937	1960984	AT3TE08250	.	+	ATLANTYS3	Gypsy	LTR	47	tiny	142	medium	11628773	chromoarm	2697	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	1961164	1961205	AT3TE08255	.	-	VANDAL6	MuDR	DNA	41	tiny	89	medium	11628552	chromoarm	2924	no-CHH	no-RdDM	LowExpressed	.	.	.	.
Chr3	1963667	1963727	AT3TE08265	.	+	TAT1_ATH	Gypsy	LTR	60	tiny	87	medium	11626030	chromoarm	5427	no-RdDM	no-RdDM	ExpressedAndAnnotated	1963634	1964965	+	transcript_id-"59b01017-bed3-4ef3-86f6-8b5f6f895ebf|8"
Chr3	1964162	1964439	AT3TE08270	.	-	RathE2_cons	.	RathE2_cons	278	short	74	medium	11625318	chromoarm	5662	.	.	LowExpressed	.	.	.	.
Chr3	1969731	1970008	AT3TE08290	.	+	RathE2_cons	.	RathE2_cons	278	short	74	medium	11619749	chromoarm	93	.	.	.	.	.	.	.
Chr3	1971551	1971591	AT3TE08295	.	+	VANDAL6	MuDR	DNA	41	tiny	89	medium	11618166	chromoarm	846	.	.	LowExpressed	.	.	.	.
Chr3	1971771	1971835	AT3TE08300	.	-	ATLANTYS3	Gypsy	LTR	64	tiny	142	medium	11617922	chromoarm	1067	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	1971859	1971900	AT3TE08305	.	+	VANDAL6	MuDR	DNA	41	tiny	89	medium	11617857	chromoarm	1012	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	1972080	1972157	AT3TE08310	.	-	ATLANTYS3	Gypsy	LTR	77	tiny	142	medium	11617600	chromoarm	755	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	1972157	1972417	AT3TE08315	.	+	VANDAL6	MuDR	DNA	260	short	89	medium	11617340	chromoarm	495	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	1986252	1986554	AT3TE08370	.	+	ATCOPIA6	Copia	LTR	302	short	8	low	11603203	chromoarm	0	no-CHH	no-RdDM	.	.	.	.	.
Chr3	2052649	2052743	AT3TE08650	.	-	HELITRONY1D	Helitron	RC	94	tiny	756	high	11537014	chromoarm	782	no-CHH	no-CHH	.	.	.	.	.
Chr3	2090642	2091095	AT3TE08810	.	+	HELITRONY3	Helitron	RC	453	short	1399	high	11498662	chromoarm	166	no-CHH	no-CHH	.	.	.	.	.
Chr3	2091926	2092667	AT3TE08815	.	-	HELITRONY1D	Helitron	RC	741	short	756	high	11497090	chromoarm	128	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	2092900	2093098	AT3TE08820	.	+	ATTIRTA1	Tc1	DNA	198	short	95	medium	11496659	chromoarm	1102	no-CHH	no-CHH	.	.	.	.	.
Chr3	2102442	2102619	AT3TE08860	.	+	ATENSPM6	En-Spm	DNA	177	short	151	medium	11487138	chromoarm	440	no-CHH	no-CHH	.	.	.	.	.
Chr3	2132795	2132895	AT3TE08990	.	-	ATCOPIA68	Copia	LTR	100	short	43	low	11456862	chromoarm	75	no-RdDM	no-CHH	.	.	.	.	.
Chr3	2137657	2137914	AT3TE09010	.	+	BRODYAGA1A	MuDR	DNA	257	short	586	high	11451843	chromoarm	624	no-CHH	no-CHH	.	.	.	.	.
Chr3	2138404	2139312	AT3TE09015	.	+	SIMPLEGUY1	Harbinger	DNA	908	short	116	medium	11450445	chromoarm	936	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	2189478	2192622	AT3TE09220	.	-	Unassigned	.	Unassigned	3144	medium	.	low	11397135	chromoarm	182	no-CHH	no-CHH	ExpressedAndAnnotated	2192579	2189494	-	transcript_id-"3279561a-6a55-4378-b633-e0f8bf50c204|8"
Chr3	2199238	2199372	AT3TE09250	.	-	RathE1_cons	.	RathE1_cons	135	short	213	high	11390385	chromoarm	280	.	.	.	.	.	.	.
Chr3	2199808	2199907	AT3TE09255	.	-	ATCOPIA54	Copia	LTR	99	tiny	18	low	11389850	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	2211735	2211944	AT3TE09300	.	+	ATTIRX1A	.	DNA	209	short	63	medium	11377813	chromoarm	118	no-CHH	no-CHH	.	.	.	.	.
Chr3	2223064	2223504	AT3TE09350	.	+	VANDAL17	MuDR	DNA	440	short	178	medium	11366253	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	2250827	2250859	AT3TE09470	.	+	HELITRONY1A	Helitron	RC	32	tiny	271	high	11338898	chromoarm	750	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	2250859	2251266	AT3TE09475	.	-	HELITRONY1E	Helitron	RC	407	short	447	high	11338491	chromoarm	782	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	2258771	2259575	AT3TE09500	.	-	LIMPET1	MuDR	DNA	804	short	116	medium	11330182	chromoarm	790	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	2259575	2260955	AT3TE09505	.	+	ATDNAI27T9A	MuDR	DNA	1380	short	116	medium	11328802	chromoarm	322	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	2304177	2304409	AT3TE09680	.	+	ATENSPM5	En-Spm	DNA	232	short	111	medium	11285348	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	2312915	2313193	AT3TE09720	.	-	ATREP10D	Helitron	RC	278	short	1295	high	11276564	chromoarm	2257	no-CHH	no-CHH	.	.	.	.	.
Chr3	2313193	2313365	AT3TE09725	.	-	HELITRONY1D	Helitron	RC	172	short	756	high	11276392	chromoarm	2085	no-CHH	no-CHH	.	.	.	.	.
Chr3	2313365	2314087	AT3TE09730	.	-	HELITRON4	Helitron	RC	722	short	199	medium	11275670	chromoarm	1363	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	2314087	2314121	AT3TE09735	.	-	HELITRONY2	Helitron	RC	34	tiny	198	medium	11275636	chromoarm	1329	no-CHH	no-CHH	.	.	.	.	.
Chr3	2319400	2319594	AT3TE09750	.	+	ATENSPM5	En-Spm	DNA	194	short	111	medium	11270163	chromoarm	1474	no-CHH	no-CHH	ExpressedAndAnnotated	2320473,2320473,2320405	2318926,2319453,2319505	-,-,-	transcript_id-"bd9a1b31-4fc3-4904-a4d9-2c0d51d6fb20|3",transcript_id-"9df1aa67-d82e-4412-9644-b92859e7d54d|47",transcript_id-"20c76653-b6d6-4261-81cb-b84601b9cab0|4"
Chr3	2378787	2379176	AT3TE10000	.	-	HELITRONY3	Helitron	RC	389	short	1399	high	11210581	chromoarm	74	no-CHH	no-CHH	.	.	.	.	.
Chr3	2413375	2413453	AT3TE10150	.	-	ATDNAI27T9A	MuDR	DNA	78	tiny	116	medium	11176304	chromoarm	65	no-CHH	no-CHH	.	.	.	.	.
Chr3	2503933	2503987	AT3TE10540	.	+	ATLINE2	L1	LINE	54	tiny	138	medium	11085770	chromoarm	458	no-CHH	no-CHH	.	.	.	.	.
Chr3	2534945	2535090	AT3TE10670	.	-	VANDAL6	MuDR	DNA	145	short	89	medium	11054667	chromoarm	183	no-CHH	no-CHH	.	.	.	.	.
Chr3	2600863	2601601	AT3TE10950	.	-	TAG3N1	HAT	DNA	738	short	97	medium	10988156	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	2628570	2628892	AT3TE11070	.	+	ATHATN7	HAT	DNA	322	short	71	medium	10960865	chromoarm	1262	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	2628892	2629083	AT3TE11075	.	+	ATREP10A	Helitron	RC	191	short	279	high	10960674	chromoarm	1584	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	2629083	2630228	AT3TE11080	.	-	ATREP3	Helitron	RC	1145	short	1439	high	10959529	chromoarm	901	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	2630228	2630255	AT3TE11085	.	-	ATREP3	Helitron	RC	27	tiny	1439	high	10959502	chromoarm	874	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	2630255	2630299	AT3TE11090	.	+	HELITRONY1D	Helitron	RC	44	tiny	756	high	10959458	chromoarm	830	DCL3-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	2630723	2630800	AT3TE11095	.	-	ATHILA7	Gypsy	LTR	77	tiny	134	medium	10958957	chromoarm	329	no-CHH	no-CHH	.	.	.	.	.
Chr3	2647144	2647189	AT3TE11160	.	-	ATREP15	Helitron	RC	45	tiny	1003	high	10942568	chromoarm	840	no-CHH	no-CHH	.	.	.	.	.
Chr3	2647189	2648520	AT3TE11165	.	+	ATREP10B	Helitron	RC	1331	short	491	high	10941237	chromoarm	104	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	2648520	2648551	AT3TE11170	.	-	ATREP11	Helitron	RC	31	tiny	841	high	10941206	chromoarm	73	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	2648551	2648624	AT3TE11175	.	+	ATREP5	Helitron	RC	73	tiny	624	high	10941133	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	2661154	2661606	AT3TE11220	.	-	BRODYAGA1A	MuDR	DNA	452	short	586	high	10928151	chromoarm	229	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	2661606	2661638	AT3TE11225	.	+	ATREP5	Helitron	RC	32	tiny	624	high	10928119	chromoarm	197	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	2661638	2661821	AT3TE11230	.	+	ATREP15	Helitron	RC	183	short	1003	high	10927936	chromoarm	14	no-CHH	no-CHH	.	.	.	.	.
Chr3	2748513	2748652	AT3TE11600	.	-	ATCOPIA49	Copia	LTR	139	short	34	low	10841105	chromoarm	187	no-CHH	no-CHH	.	.	.	.	.
Chr3	2772621	2772911	AT3TE11700	.	+	VANDAL13	MuDR	DNA	290	short	38	low	10816846	chromoarm	1684	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	2772911	2773424	AT3TE11705	.	+	ATN9_1	MuDR	DNA	513	short	65	medium	10816333	chromoarm	1974	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	2773600	2773754	AT3TE11710	.	+	VANDAL14	MuDR	DNA	154	short	25	low	10816003	chromoarm	2504	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	2802813	2802871	AT3TE11830	.	-	HELITRONY3	Helitron	RC	58	tiny	1399	high	10786886	chromoarm	40	no-CHH	no-CHH	.	.	.	.	.
Chr3	2802871	2803416	AT3TE11835	.	-	ATTIR16T3A	.	DNA	545	short	106	medium	10786341	chromoarm	98	no-CHH	no-CHH	.	.	.	.	.
Chr3	2808421	2818893	AT3TE11850	.	+	VANDAL16	MuDR	DNA	10472	long	42	low	10770864	chromoarm	251	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	2847180	2847219	AT3TE11970	.	+	BRODYAGA2	MuDR	DNA	39	tiny	525	high	10742538	chromoarm	1187	no-CHH	no-CHH	.	.	.	.	.
Chr3	2847219	2848004	AT3TE11975	.	-	ATREP11	Helitron	RC	785	short	841	high	10741753	chromoarm	402	no-CHH	no-CHH	.	.	.	.	.
Chr3	2884002	2884461	AT3TE12120	.	+	ATTIR16T3A	.	DNA	459	short	106	medium	10705296	chromoarm	803	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	2919693	2921202	AT3TE12270	.	-	ATREP10D	Helitron	RC	1509	short	1295	high	10668555	chromoarm	601	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	2922916	2923292	AT3TE12275	.	+	HELITRONY1C	Helitron	RC	376	short	120	medium	10666465	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	2951515	2952211	AT3TE12390	.	+	VANDAL17	MuDR	DNA	696	short	178	medium	10637546	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	2970564	2971575	AT3TE12470	.	-	ATMU6N1	MuDR	DNA	1011	short	39	low	10618182	chromoarm	273	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	2971575	2971602	AT3TE12475	.	+	ATMU6N1	MuDR	DNA	27	tiny	39	low	10618155	chromoarm	753	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	2988019	2988081	AT3TE12540	.	+	ATREP1	Helitron	RC	62	tiny	498	high	10601676	chromoarm	159	no-CHH	no-RdDM	LowExpressed	.	.	.	.
Chr3	2988081	2988906	AT3TE12545	.	+	AT9TSD1	MuDR	DNA	825	short	55	medium	10600851	chromoarm	221	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	2988906	2989421	AT3TE12550	.	+	ATREP10D	Helitron	RC	515	short	1295	high	10600336	chromoarm	193	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	3079481	3079956	AT3TE12930	.	-	ATREP1	Helitron	RC	475	short	498	high	10509801	chromoarm	574	no-CHH	no-CHH	.	.	.	.	.
Chr3	3079956	3080603	AT3TE12935	.	-	ATREP2	Helitron	RC	647	short	164	medium	10509154	chromoarm	1049	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	3080603	3080686	AT3TE12940	.	-	ATREP11	Helitron	RC	83	tiny	841	high	10509071	chromoarm	1312	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	3088622	3089287	AT3TE12970	.	+	ATREP5	Helitron	RC	665	short	624	high	10500470	chromoarm	427	no-CHH	no-CHH	.	.	.	.	.
Chr3	3096743	3097057	AT3TE13000	.	+	ATHILA6A	Gypsy	LTR	314	short	247	high	10492700	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	3111277	3115854	AT3TE13060	.	-	ATLANTYS3	Gypsy	LTR	4577	medium	142	medium	10473903	chromoarm	370	no-CHH	no-CHH	.	.	.	.	.
Chr3	3120034	3121290	AT3TE13070	.	-	VANDAL22	MuDR	DNA	1256	short	48	low	10468467	chromoarm	643	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	3120486	3120529	AT3TE13075	.	-	VANDAL22	MuDR	DNA	43	tiny	48	low	10469228	chromoarm	1095	no-CHH	no-RdDM	.	.	.	.	.
Chr3	3121492	3121533	AT3TE13080	.	+	VANDAL6	MuDR	DNA	41	tiny	89	medium	10468224	chromoarm	2101	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	3121716	3121802	AT3TE13085	.	-	ATLANTYS3	Gypsy	LTR	86	tiny	142	medium	10467955	chromoarm	2325	no-CHH	no-CHH	.	.	.	.	.
Chr3	3121858	3122275	AT3TE13090	.	+	VANDAL6	MuDR	DNA	417	short	89	medium	10467482	chromoarm	2467	no-CHH	no-CHH	.	.	.	.	.
Chr3	3122305	3122501	AT3TE13095	.	-	VANDAL22	MuDR	DNA	196	short	48	low	10467256	chromoarm	2914	no-CHH	no-CHH	.	.	.	.	.
Chr3	3122501	3122746	AT3TE13100	.	+	ATLANTYS3	Gypsy	LTR	245	short	142	medium	10467011	chromoarm	3110	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	3122944	3123289	AT3TE13105	.	-	VANDAL6	MuDR	DNA	345	short	89	medium	10466468	chromoarm	2733	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	3185338	3185660	AT3TE13370	.	-	ATREP19	.	DNA	322	short	189	medium	10404097	chromoarm	14	no-CHH	no-CHH	.	.	.	.	.
Chr3	3188403	3188500	AT3TE13380	.	+	ATREP13	Helitron	RC	97	tiny	106	medium	10401257	chromoarm	332	no-CHH	no-CHH	.	.	.	.	.
Chr3	3228878	3229006	AT3TE13550	.	+	ATDNAI27T9A	MuDR	DNA	128	short	116	medium	10360751	chromoarm	286	no-CHH	no-CHH	.	.	.	.	.
Chr3	3263354	3263381	AT3TE13700	.	+	HELITRONY3	Helitron	RC	27	tiny	1399	high	10326376	chromoarm	1028	no-CHH	no-CHH	.	.	.	.	.
Chr3	3263427	3264065	AT3TE13705	.	+	ARNOLDY2	MuDR	DNA	638	short	288	high	10325692	chromoarm	344	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	3264065	3264232	AT3TE13710	.	+	HELITRONY3	Helitron	RC	167	short	1399	high	10325525	chromoarm	177	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	3275684	3276403	AT3TE13760	.	+	HELITRONY1B	Helitron	RC	719	short	414	high	10313354	chromoarm	112	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	3367904	3368008	AT3TE14150	.	-	RP1_AT	.	DNA	104	short	87	medium	10221749	chromoarm	0	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	3403281	3403396	AT3TE14300	.	-	ATHILA7	Gypsy	LTR	115	short	134	medium	10186361	chromoarm	669	no-CHH	no-CHH	.	.	.	.	.
Chr3	3436474	3437099	AT3TE14440	.	+	HELITRON4	Helitron	RC	625	short	199	medium	10152658	chromoarm	88	no-CHH	no-CHH	.	.	.	.	.
Chr3	3441930	3442117	AT3TE14460	.	+	ATTIRX1D	.	DNA	187	short	28	low	10147640	chromoarm	658	no-CHH	no-CHH	.	.	.	.	.
Chr3	3454846	3455139	AT3TE14510	.	-	ATREP5	Helitron	RC	293	short	624	high	10134618	chromoarm	869	no-CHH	no-CHH	.	.	.	.	.
Chr3	3467039	3467187	AT3TE14560	.	-	ATCOPIA13	Copia	LTR	148	short	35	low	10122570	chromoarm	95	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	3478252	3478327	AT3TE14610	.	+	SIMPLEHAT1	HAT	DNA	76	tiny	56	medium	10111430	chromoarm	931	.	.	.	.	.	.	.
Chr3	3478328	3479086	AT3TE14615	.	+	SIMPLEGUY1	Harbinger	DNA	759	short	116	medium	10110671	chromoarm	892	.	.	.	.	.	.	.
Chr3	3479086	3479430	AT3TE14620	.	+	HELITRONY3	Helitron	RC	344	short	1399	high	10110327	chromoarm	548	no-CHH	no-CHH	.	.	.	.	.
Chr3	3497419	3497753	AT3TE14700	.	-	TSCL	.	LINE?	334	short	81	medium	10092004	chromoarm	192	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	3505025	3505577	AT3TE14730	.	+	HELITRON2	Helitron	RC	552	short	194	medium	10084180	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	3507503	3508059	AT3TE14735	.	-	ATREP9	Helitron	RC	556	short	201	high	10081698	chromoarm	327	no-CHH	no-CHH	.	.	.	.	.
Chr3	3523798	3524538	AT3TE14800	.	-	ATREP15	Helitron	RC	740	short	1003	high	10065219	chromoarm	972	no-CHH	no-CHH	.	.	.	.	.
Chr3	3538016	3538064	AT3TE14860	.	-	BOMZH1	MuDR	DNA	49	tiny	28	low	10051693	chromoarm	720	.	.	.	.	.	.	.
Chr3	3538064	3538351	AT3TE14865	.	-	ATMU6	MuDR	DNA	287	short	26	low	10051406	chromoarm	769	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	3538351	3538499	AT3TE14870	.	-	ATMU4	MuDR	DNA	148	short	14	low	10051258	chromoarm	847	no-CHH	no-CHH	.	.	.	.	.
Chr3	3538807	3538836	AT3TE14875	.	-	BOMZH2	MuDR	DNA	29	tiny	47	low	10050921	chromoarm	510	no-CHH	no-CHH	.	.	.	.	.
Chr3	3538836	3539161	AT3TE14880	.	-	ATMU6	MuDR	DNA	325	short	26	low	10050596	chromoarm	185	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	3544810	3545371	AT3TE14900	.	-	ATREP9	Helitron	RC	561	short	201	high	10044386	chromoarm	477	no-CHH	no-CHH	.	.	.	.	.
Chr3	3586801	3586949	AT3TE15080	.	-	ATCOPIA75	Copia	LTR	148	short	20	low	10002808	chromoarm	1152	no-CHH	no-CHH	.	.	.	.	.
Chr3	3587095	3587482	AT3TE15085	.	-	ATHATN4	HAT	DNA	387	short	56	medium	10002275	chromoarm	1446	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	3601396	3602064	AT3TE15140	.	-	ATREP4	Helitron	RC	668	short	832	high	9987693	chromoarm	991	no-CHH	no-CHH	.	.	.	.	.
Chr3	3602064	3602294	AT3TE15145	.	+	ATENSPM6	En-Spm	DNA	230	short	151	medium	9987463	chromoarm	761	no-CHH	no-CHH	.	.	.	.	.
Chr3	3614901	3615488	AT3TE15190	.	+	HELITRONY1D	Helitron	RC	587	short	756	high	9974269	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	3615488	3615886	AT3TE15195	.	-	ATREP4	Helitron	RC	398	short	832	high	9973871	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	3656898	3657240	AT3TE15370	.	+	HELITRONY1D	Helitron	RC	342	short	756	high	9932517	chromoarm	3387	no-CHH	no-CHH	.	.	.	.	.
Chr3	3664652	3665709	AT3TE15400	.	+	ATREP15	Helitron	RC	1057	short	1003	high	9924048	chromoarm	681	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	3686059	3686092	AT3TE15490	.	-	ATREP10D	Helitron	RC	33	tiny	1295	high	9903665	chromoarm	902	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	3686092	3686540	AT3TE15495	.	-	ATHPOGON1	Pogo	DNA	448	short	174	medium	9903217	chromoarm	454	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	3686540	3686872	AT3TE15500	.	-	ATREP10D	Helitron	RC	332	short	1295	high	9902885	chromoarm	122	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	3689639	3690688	AT3TE15510	.	+	ATREP10D	Helitron	RC	1049	short	1295	high	9899069	chromoarm	310	no-CHH	no-CHH	.	.	.	.	.
Chr3	3715914	3715975	AT3TE15620	.	-	ATREP15	Helitron	RC	61	tiny	1003	high	9873782	chromoarm	10	no-CHH	no-CHH	.	.	.	.	.
Chr3	3715975	3716018	AT3TE15625	.	+	HELITRONY1E	Helitron	RC	43	tiny	447	high	9873739	chromoarm	71	no-CHH	no-CHH	.	.	.	.	.
Chr3	3716018	3716079	AT3TE15630	.	-	HELITRON4	Helitron	RC	61	tiny	199	medium	9873678	chromoarm	114	no-CHH	no-CHH	.	.	.	.	.
Chr3	3716079	3717528	AT3TE15635	.	+	ATREP3	Helitron	RC	1449	short	1439	high	9872229	chromoarm	175	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	3717536	3717734	AT3TE15640	.	-	ATREP15	Helitron	RC	198	short	1003	high	9872023	chromoarm	794	no-CHH	no-CHH	.	.	.	.	.
Chr3	3742472	3742747	AT3TE15750	.	-	ATREP4	Helitron	RC	275	short	832	high	9847010	chromoarm	1371	no-CHH	no-CHH	.	.	.	.	.
Chr3	3742747	3743368	AT3TE15755	.	+	ARNOLDY2	MuDR	DNA	621	short	288	high	9846389	chromoarm	1447	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	3743369	3743403	AT3TE15760	.	-	ATTIR16T3A	.	DNA	35	tiny	106	medium	9846354	chromoarm	1412	.	.	.	.	.	.	.
Chr3	3743403	3743882	AT3TE15765	.	+	ATREP10D	Helitron	RC	479	short	1295	high	9845875	chromoarm	933	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	3743882	3744462	AT3TE15770	.	+	VANDAL17	MuDR	DNA	580	short	178	medium	9845295	chromoarm	353	no-CHH	no-CHH	.	.	.	.	.
Chr3	3744462	3744655	AT3TE15775	.	-	HELITRONY1A	Helitron	RC	193	short	271	high	9845102	chromoarm	160	no-CHH	no-CHH	.	.	.	.	.
Chr3	3744655	3744735	AT3TE15780	.	+	ATREP10D	Helitron	RC	80	tiny	1295	high	9845022	chromoarm	80	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	3749980	3750002	AT3TE15800	.	+	HELITRONY3	Helitron	RC	22	tiny	1399	high	9839755	chromoarm	887	no-CHH	no-CHH	.	.	.	.	.
Chr3	3750002	3750330	AT3TE15805	.	-	ATREP6	Helitron	RC	328	short	181	medium	9839427	chromoarm	909	no-CHH	no-CHH	.	.	.	.	.
Chr3	3750330	3750847	AT3TE15810	.	-	ATREP9	Helitron	RC	517	short	201	high	9838910	chromoarm	849	no-CHH	no-CHH	.	.	.	.	.
Chr3	3754060	3754190	AT3TE15820	.	-	ATDNA2T9A	MuDR	DNA	130	short	48	low	9835567	chromoarm	338	no-CHH	no-CHH	.	.	.	.	.
Chr3	3754835	3755507	AT3TE15825	.	-	ATREP15	Helitron	RC	672	short	1003	high	9834250	chromoarm	518	no-CHH	PolIV-RdDM	ExpressedAndAnnotated	3754370	3755149	+	transcript_id-"09d9a8df-ac6a-47be-b328-ac77c2b8032f|9"
Chr3	3770704	3771212	AT3TE15880	.	+	ATREP4	Helitron	RC	508	short	832	high	9818545	chromoarm	414	no-CHH	no-CHH	.	.	.	.	.
Chr3	3807303	3807366	AT3TE16030	.	-	VANDAL16	MuDR	DNA	63	tiny	42	low	9782391	chromoarm	677	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	3807366	3812643	AT3TE16035	.	-	ATGP3	Gypsy	LTR	5277	long	60	medium	9777114	chromoarm	740	no-RdDM	no-RdDM	ExpressedAndAnnotated	3807699	3807326	-	transcript_id-"76c4dc01-9947-4cb0-836a-4b28a96e2ec7|7"
Chr3	3812753	3813101	AT3TE16040	.	+	ATLINE1_3A	L1	LINE	348	short	160	medium	9776656	chromoarm	1382	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	3837406	3837529	AT3TE16140	.	+	TAT1_ATH	Gypsy	LTR	123	short	87	medium	9752228	chromoarm	625	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	3837703	3837725	AT3TE16145	.	+	BRODYAGA1	MuDR	DNA	22	tiny	251	high	9752032	chromoarm	922	no-CHH	no-RdDM	.	.	.	.	.
Chr3	3837725	3838970	AT3TE16150	.	+	BRODYAGA1	MuDR	DNA	1245	short	251	high	9750787	chromoarm	318	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	3847809	3848028	AT3TE16190	.	+	ATENSPM1	En-Spm	DNA	219	short	30	low	9741729	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	3873557	3873631	AT3TE16300	.	-	ATREP11	Helitron	RC	74	tiny	841	high	9716126	chromoarm	1132	no-CHH	no-CHH	.	.	.	.	.
Chr3	3873633	3873754	AT3TE16305	.	-	BRODYAGA2	MuDR	DNA	121	short	525	high	9716003	chromoarm	1009	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	3873754	3874629	AT3TE16310	.	+	ATREP10D	Helitron	RC	875	short	1295	high	9715128	chromoarm	134	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	3874629	3874777	AT3TE16315	.	-	ATREP10D	Helitron	RC	148	short	1295	high	9714980	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	3894305	3894386	AT3TE16390	.	-	TSCL	.	LINE?	81	tiny	81	medium	9695371	chromoarm	349	no-CHH	no-CHH	.	.	.	.	.
Chr3	3951631	3952044	AT3TE16630	.	-	ATENSPM1A	En-Spm	DNA	413	short	77	medium	9637713	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	3964947	3964981	AT3TE16690	.	+	ATREP3	Helitron	RC	34	tiny	1439	high	9624776	chromoarm	963	no-CHH	no-CHH	.	.	.	.	.
Chr3	3964981	3966146	AT3TE16695	.	+	ATREP3	Helitron	RC	1165	short	1439	high	9623611	chromoarm	980	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	3966146	3966391	AT3TE16700	.	+	ATREP3	Helitron	RC	245	short	1439	high	9623366	chromoarm	735	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	3986993	3988561	AT3TE16790	.	-	ATREP10D	Helitron	RC	1568	short	1295	high	9601196	chromoarm	845	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	3988561	3988597	AT3TE16795	.	-	ATREP11	Helitron	RC	36	tiny	841	high	9601160	chromoarm	809	no-CHH	no-CHH	.	.	.	.	.
Chr3	4018302	4018379	AT3TE16920	.	+	ATCOPIA26	Copia	LTR	77	tiny	19	low	9571378	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	4082878	4083068	AT3TE17200	.	+	ATTIRTA1	Tc1	DNA	190	short	95	medium	9506689	chromoarm	196	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	4087387	4087713	AT3TE17210	.	+	ATTIRX1D	.	DNA	326	short	28	low	9502044	chromoarm	660	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	4087713	4088200	AT3TE17215	.	-	HELITRONY3	Helitron	RC	487	short	1399	high	9501557	chromoarm	173	no-CHH	no-CHH	.	.	.	.	.
Chr3	4093666	4093833	AT3TE17230	.	-	VANDAL8	MuDR	DNA	167	short	123	medium	9495924	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	4111908	4112429	AT3TE17310	.	+	ATTIR16T3A	.	DNA	521	short	106	medium	9477328	chromoarm	569	no-CHH	no-CHH	.	.	.	.	.
Chr3	4112429	4112466	AT3TE17315	.	-	HELITRONY1E	Helitron	RC	37	tiny	447	high	9477291	chromoarm	532	no-CHH	no-CHH	.	.	.	.	.
Chr3	4118548	4118678	AT3TE17340	.	+	ATTIRTA1	Tc1	DNA	130	short	95	medium	9471079	chromoarm	2840	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	4125270	4125356	AT3TE17370	.	-	ATENSPM4	En-Spm	DNA	86	tiny	50	medium	9464401	chromoarm	1947	no-CHH	no-CHH	.	.	.	.	.
Chr3	4125407	4125452	AT3TE17375	.	-	ATENSPM4	En-Spm	DNA	45	tiny	50	medium	9464305	chromoarm	2084	no-CHH	no-CHH	.	.	.	.	.
Chr3	4175347	4175541	AT3TE17580	.	-	ATHAT10	HAT	DNA	194	short	35	low	9414216	chromoarm	891	no-CHH	no-CHH	.	.	.	.	.
Chr3	4216108	4216154	AT3TE17750	.	-	ATREP1	Helitron	RC	46	tiny	498	high	9373603	chromoarm	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	4216154	4216330	AT3TE17755	.	-	ATREP10B	Helitron	RC	176	short	491	high	9373427	chromoarm	40	no-CHH	no-CHH	.	.	.	.	.
Chr3	4216331	4216357	AT3TE17760	.	-	ATREP10D	Helitron	RC	26	tiny	1295	high	9373400	chromoarm	217	no-CHH	no-CHH	.	.	.	.	.
Chr3	4216357	4217139	AT3TE17765	.	-	ATREP10D	Helitron	RC	782	short	1295	high	9372618	chromoarm	243	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	4217139	4217332	AT3TE17770	.	-	ATREP4	Helitron	RC	193	short	832	high	9372425	chromoarm	1025	no-CHH	no-CHH	.	.	.	.	.
Chr3	4217332	4217361	AT3TE17775	.	-	ATREP15	Helitron	RC	29	tiny	1003	high	9372396	chromoarm	1218	no-CHH	no-CHH	.	.	.	.	.
Chr3	4263026	4263233	AT3TE17970	.	-	RP1_AT	.	DNA	207	short	87	medium	9326524	chromoarm	173	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	4274617	4275285	AT3TE18020	.	-	ATREP3	Helitron	RC	668	short	1439	high	9314472	chromoarm	269	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	4275285	4275371	AT3TE18025	.	-	ATREP3	Helitron	RC	86	tiny	1439	high	9314386	chromoarm	388	no-CHH	no-RdDM	.	.	.	.	.
Chr3	4275371	4275488	AT3TE18030	.	-	HELITRON1	Helitron	RC	117	short	130	medium	9314269	chromoarm	271	no-CHH	no-RdDM	LowExpressed	.	.	.	.
Chr3	4276477	4276602	AT3TE18035	.	-	HELITRON5	Helitron	RC	125	short	56	medium	9313155	chromoarm	237	no-CHH	no-RdDM	.	.	.	.	.
Chr3	4276602	4288584	AT3TE18040	.	-	HELITRON1	Helitron	RC	11982	long	130	medium	9301173	chromoarm	362	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	4283614	4285728	AT3TE18045	.	-	HELITRON4	Helitron	RC	2114	medium	199	medium	9304029	chromoarm	3696	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	4285728	4285854	AT3TE18050	.	-	HELITRON1	Helitron	RC	126	short	130	medium	9303903	chromoarm	3570	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	4288584	4288944	AT3TE18060	.	-	HELITRON1	Helitron	RC	360	short	130	medium	9300813	chromoarm	480	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	4288944	4289130	AT3TE18065	.	-	ATREP5	Helitron	RC	186	short	624	high	9300627	chromoarm	294	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	4295209	4295499	AT3TE18090	.	-	ATCOPIA86	Copia	LTR	290	short	7	low	9294258	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	4318223	4318256	AT3TE18190	.	+	ATREP15	Helitron	RC	33	tiny	1003	high	9271501	chromoarm	226	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	4318256	4319144	AT3TE18195	.	-	ATREP3	Helitron	RC	888	short	1439	high	9270613	chromoarm	259	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	4319144	4319178	AT3TE18200	.	+	AT9TSD1	MuDR	DNA	34	tiny	55	medium	9270579	chromoarm	625	no-CHH	no-CHH	.	.	.	.	.
Chr3	4340542	4340611	AT3TE18290	.	-	ATREP3	Helitron	RC	69	tiny	1439	high	9249146	chromoarm	560	no-CHH	no-CHH	.	.	.	.	.
Chr3	4340611	4341431	AT3TE18295	.	-	ATREP5	Helitron	RC	820	short	624	high	9248326	chromoarm	232	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	4341431	4341568	AT3TE18300	.	-	ATREP10D	Helitron	RC	137	short	1295	high	9248189	chromoarm	95	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	4377060	4378171	AT3TE18450	.	-	SADHU	.	Unassigned	1111	short	16	low	9211586	chromoarm	166	no-CHH	no-CHH	ExpressedAndAnnotated	4378198,4377990	4377067,4377076	-,-	transcript_id-"73cab02f-80c4-4aa2-9e9b-992d0a8ffd8a|5",transcript_id-"8e336f40-94b3-44e6-acd8-d37e977acdd6|7"
Chr3	4388253	4388459	AT3TE18490	.	-	ATENSPM5	En-Spm	DNA	206	short	111	medium	9201298	chromoarm	33	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	4394293	4395044	AT3TE18510	.	-	HELITRONY1D	Helitron	RC	751	short	756	high	9194713	chromoarm	445	no-CHH	no-CHH	.	.	.	.	.
Chr3	4410543	4410915	AT3TE18580	.	-	ATREP17	MuDR	DNA	372	short	34	low	9178842	chromoarm	1018	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr3	4467587	4467614	AT3TE18820	.	+	HELITRONY3	Helitron	RC	27	tiny	1399	high	9122143	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	4467614	4468511	AT3TE18825	.	+	ATREP1	Helitron	RC	897	short	498	high	9121246	chromoarm	0	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	4468511	4469099	AT3TE18830	.	+	ATREP3	Helitron	RC	588	short	1439	high	9120658	chromoarm	41	no-CHH	no-CHH	.	.	.	.	.
Chr3	4494398	4494521	AT3TE18940	.	+	HELITRONY3	Helitron	RC	123	short	1399	high	9095236	chromoarm	680	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr3	4494521	4495163	AT3TE18945	.	+	HELITRONY1C	Helitron	RC	642	short	120	medium	9094594	chromoarm	38	PolIV-and-RDR6-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	4494813	4495020	AT3TE18950	.	-	ATDNATA1	Mariner	DNA	207	short	28	low	9094737	chromoarm	181	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	4500998	4501630	AT3TE18980	.	-	HELITRONY1A	Helitron	RC	632	short	271	high	9088127	chromoarm	162	no-CHH	no-CHH	.	.	.	.	.
Chr3	4501630	4501687	AT3TE18985	.	+	ATREP10D	Helitron	RC	57	tiny	1295	high	9088070	chromoarm	794	no-CHH	no-CHH	.	.	.	.	.
Chr3	4525824	4526008	AT3TE19080	.	-	VANDAL17	MuDR	DNA	184	short	178	medium	9063749	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	4551424	4551511	AT3TE19190	.	+	ATREP4	Helitron	RC	87	tiny	832	high	9038246	chromoarm	561	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr3	4551511	4552277	AT3TE19195	.	+	ATREP11	Helitron	RC	766	short	841	high	9037480	chromoarm	648	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	4552277	4552311	AT3TE19200	.	+	ATREP11	Helitron	RC	34	tiny	841	high	9037446	chromoarm	1414	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	4552312	4552406	AT3TE19205	.	+	ATREP5	Helitron	RC	95	tiny	624	high	9037351	chromoarm	1448	.	.	.	.	.	.	.
Chr3	4579039	4579238	AT3TE19310	.	+	ATREP14	Helitron	RC	199	short	47	low	9010519	chromoarm	1012	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	4579238	4579714	AT3TE19315	.	+	ATREP2	Helitron	RC	476	short	164	medium	9010043	chromoarm	1211	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	4584662	4584686	AT3TE19330	.	+	ATREP3	Helitron	RC	24	tiny	1439	high	9005071	chromoarm	328	no-CHH	no-CHH	.	.	.	.	.
Chr3	4584686	4585388	AT3TE19335	.	+	ATREP2	Helitron	RC	702	short	164	medium	9004369	chromoarm	352	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	4585388	4585564	AT3TE19340	.	-	VANDAL8	MuDR	DNA	176	short	123	medium	9004193	chromoarm	586	no-CHH	no-CHH	.	.	.	.	.
Chr3	4585564	4585633	AT3TE19345	.	+	ATREP3	Helitron	RC	69	tiny	1439	high	9004124	chromoarm	517	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	4608307	4608475	AT3TE19440	.	+	ATCOPIA68	Copia	LTR	168	short	43	low	8981282	chromoarm	50	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	4647097	4647531	AT3TE19610	.	+	ATREP1	Helitron	RC	434	short	498	high	8942226	chromoarm	126	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	4672789	4672815	AT3TE19720	.	+	ATDNAI27T9A	MuDR	DNA	26	tiny	116	medium	8916942	chromoarm	211	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	4672815	4672947	AT3TE19725	.	+	VANDAL2N1	MuDR	DNA	132	short	51	medium	8916810	chromoarm	79	no-CHH	no-CHH	ExpressedAndAnnotated	4672802,4675736	4676160,4672861	+,-	transcript_id-"a128597c-7e75-4100-b001-5731ef007c31|11",transcript_id-"c958161f-173e-4974-8278-9db7da1f78e4|7"
Chr3	4720879	4721123	AT3TE19920	.	+	ATREP10D	Helitron	RC	244	short	1295	high	8868634	chromoarm	355	no-CHH	no-CHH	.	.	.	.	.
Chr3	4721123	4722211	AT3TE19925	.	+	ATREP1	Helitron	RC	1088	short	498	high	8867546	chromoarm	599	no-CHH	no-CHH	.	.	.	.	.
Chr3	4722211	4722498	AT3TE19930	.	+	ATREP15	Helitron	RC	287	short	1003	high	8867259	chromoarm	1687	no-CHH	no-CHH	.	.	.	.	.
Chr3	4728233	4728660	AT3TE19950	.	-	HELITRONY1D	Helitron	RC	427	short	756	high	8861097	chromoarm	1225	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	4752110	4753096	AT3TE20050	.	+	SIMPLEGUY1	Harbinger	DNA	986	short	116	medium	8836661	chromoarm	1527	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	4795817	4795956	AT3TE20230	.	-	ATREP10D	Helitron	RC	139	short	1295	high	8793801	chromoarm	1490	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	4795956	4796010	AT3TE20235	.	-	ATREP10C	Helitron	RC	54	tiny	123	medium	8793747	chromoarm	1629	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	4796010	4797014	AT3TE20240	.	-	ATREP10A	Helitron	RC	1004	short	279	high	8792743	chromoarm	1011	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	4797015	4797158	AT3TE20245	.	-	ATREP10A	Helitron	RC	144	short	279	high	8792599	chromoarm	867	.	.	.	.	.	.	.
Chr3	4797158	4797405	AT3TE20250	.	+	ATREP3	Helitron	RC	247	short	1439	high	8792352	chromoarm	620	no-CHH	no-CHH	.	.	.	.	.
Chr3	4839206	4839710	AT3TE20430	.	+	ATREP11	Helitron	RC	504	short	841	high	8750047	chromoarm	5729	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	4861443	4862109	AT3TE20520	.	-	BRODYAGA2	MuDR	DNA	666	short	525	high	8727648	chromoarm	43	no-CHH	no-CHH	.	.	.	.	.
Chr3	4866454	4866883	AT3TE20530	.	+	ATLINE1_1	L1	LINE	429	short	61	medium	8722874	chromoarm	494	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	4869717	4872168	AT3TE20540	.	-	ATLINEIII	L1	LINE	2451	medium	196	medium	8717589	chromoarm	1412	no-CHH	no-CHH	.	.	.	.	.
Chr3	4874737	4874932	AT3TE20550	.	-	ATLINEIII	L1	LINE	195	short	196	medium	8714825	chromoarm	935	no-CHH	no-CHH	.	.	.	.	.
Chr3	4927416	4927594	AT3TE20770	.	-	VANDAL21	MuDR	DNA	178	short	64	medium	8662163	chromoarm	252	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	4927995	4928157	AT3TE20775	.	-	ATENSPM1A	En-Spm	DNA	162	short	77	medium	8661600	chromoarm	0	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	4929014	4932433	AT3TE20780	.	-	VANDAL21	MuDR	DNA	3419	medium	64	medium	8657324	chromoarm	146	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	4929892,4929682	4929113,4929184	-,-	transcript_id-"5bc90378-67b7-485b-b153-6e6359903b11|8",transcript_id-"3a784216-f275-4e90-ae8a-32b7938231fd|15"
Chr3	4929520	4929571	AT3TE20785	.	-	VANDAL21	MuDR	DNA	51	tiny	64	medium	8660186	chromoarm	652	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	4931839	4931907	AT3TE20790	.	-	VANDAL21	MuDR	DNA	68	tiny	64	medium	8657850	chromoarm	2570	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	4932433	4932460	AT3TE20795	.	-	VANDAL21	MuDR	DNA	27	tiny	64	medium	8657297	chromoarm	2017	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	4944218	4945401	AT3TE20840	.	+	ATREP10D	Helitron	RC	1183	short	1295	high	8644356	chromoarm	655	no-CHH	no-CHH	.	.	.	.	.
Chr3	4967159	4970274	AT3TE20930	.	-	Unassigned	.	Unassigned	3115	medium	.	low	8619483	chromoarm	284	no-CHH	no-CHH	ExpressedAndAnnotated	4970267,4967726	4967158,4967160	-,-	transcript_id-"a4287306-6573-400a-bb9b-1a3868ae6e82|3",transcript_id-"da64dc74-9024-4841-964d-9d705da81607|6"
Chr3	4977212	4977259	AT3TE20960	.	-	ATREP15	Helitron	RC	47	tiny	1003	high	8612498	chromoarm	1466	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	4977259	4978185	AT3TE20965	.	+	ATREP1	Helitron	RC	926	short	498	high	8611572	chromoarm	540	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	4978185	4978524	AT3TE20970	.	-	ATREP3	Helitron	RC	339	short	1439	high	8611233	chromoarm	201	no-CHH	no-CHH	.	.	.	.	.
Chr3	4995011	4995373	AT3TE21040	.	-	ATTIRX1B	.	DNA	362	short	44	low	8594384	chromoarm	241	no-CHH	no-CHH	.	.	.	.	.
Chr3	5068458	5068550	AT3TE21350	.	-	ATHAT1	HAT	DNA	92	tiny	105	medium	8521207	chromoarm	566	no-CHH	no-CHH	.	.	.	.	.
Chr3	5082999	5083370	AT3TE21410	.	-	ATENSPM6	En-Spm	DNA	371	short	151	medium	8506387	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	5094240	5094702	AT3TE21460	.	+	VANDAL17	MuDR	DNA	462	short	178	medium	8495055	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	5151995	5155306	AT3TE21700	.	-	ATIS112A	Harbinger	DNA	3311	medium	173	medium	8434451	chromoarm	3785	no-RdDM	no-RdDM	ExpressedAndAnnotated	5153640	5152112	-	transcript_id-"b45ad917-d85b-48c8-babc-c1fe0f1c237c|5"
Chr3	5163321	5164532	AT3TE21730	.	+	ATREP15	Helitron	RC	1211	short	1003	high	8425225	chromoarm	1016	no-CHH	no-CHH	.	.	.	.	.
Chr3	5164893	5165123	AT3TE21735	.	+	ATDNATA1	Mariner	DNA	230	short	28	low	8424634	chromoarm	2126	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	5220354	5220912	AT3TE21970	.	-	BRODYAGA2	MuDR	DNA	558	short	525	high	8368845	chromoarm	486	no-CHH	no-CHH	.	.	.	.	.
Chr3	5228099	5229119	AT3TE22000	.	-	ATREP15	Helitron	RC	1020	short	1003	high	8360638	chromoarm	433	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	5229119	5229345	AT3TE22005	.	-	ATREP11	Helitron	RC	226	short	841	high	8360412	chromoarm	439	no-CHH	no-CHH	.	.	.	.	.
Chr3	5230664	5231142	AT3TE22010	.	-	HELITRONY1D	Helitron	RC	478	short	756	high	8358615	chromoarm	18	no-CHH	no-CHH	.	.	.	.	.
Chr3	5231142	5231192	AT3TE22015	.	+	ATREP1	Helitron	RC	50	tiny	498	high	8358565	chromoarm	496	no-CHH	no-CHH	.	.	.	.	.
Chr3	5232035	5232730	AT3TE22020	.	+	ATREP11	Helitron	RC	695	short	841	high	8357027	chromoarm	1389	no-CHH	no-CHH	.	.	.	.	.
Chr3	5245218	5246547	AT3TE22070	.	-	ATREP10D	Helitron	RC	1329	short	1295	high	8343210	chromoarm	181	no-CHH	no-CHH	.	.	.	.	.
Chr3	5265408	5266028	AT3TE22150	.	-	HELITRONY1A	Helitron	RC	620	short	271	high	8323729	chromoarm	30	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	5277961	5286732	AT3TE22200	.	-	VANDAL17	MuDR	DNA	8771	long	178	medium	8303025	chromoarm	303	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	5278203,5281318,5281318,5282597	5281589,5281517,5281581,5281686	+,+,+,-	transcript_id-"f84b1add-9f1f-449d-8e17-289fdaa2825e|3",transcript_id-"ccec168d-1abe-4deb-a0a7-e7a84c085907|3",transcript_id-"c3e8d5f4-0f1c-4a34-922d-59be3aba3c95|6",transcript_id-"427f6a6b-4106-4ec9-a816-45511219aee5|49"
Chr3	5349346	5349383	AT3TE22470	.	+	ATREP4	Helitron	RC	37	tiny	832	high	8240374	chromoarm	168	no-CHH	no-CHH	.	.	.	.	.
Chr3	5349383	5350545	AT3TE22475	.	-	ATREP3	Helitron	RC	1162	short	1439	high	8239212	chromoarm	205	no-CHH	no-CHH	.	.	.	.	.
Chr3	5377196	5377416	AT3TE22580	.	-	ATMU1	MuDR	DNA	220	short	59	medium	8212341	chromoarm	224	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	5377978	5378215	AT3TE22585	.	+	ATMU1	MuDR	DNA	237	short	59	medium	8211542	chromoarm	1006	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	5378265	5378807	AT3TE22590	.	+	ATREP10B	Helitron	RC	542	short	491	high	8210950	chromoarm	1293	no-CHH	no-CHH	.	.	.	.	.
Chr3	5378807	5380229	AT3TE22595	.	-	ATREP10	Helitron	RC	1422	short	63	medium	8209528	chromoarm	1373	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	5380231	5380294	AT3TE22600	.	-	ATREP10B	Helitron	RC	63	tiny	491	high	8209463	chromoarm	1308	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	5392740	5393070	AT3TE22650	.	+	ATCOPIA90	Copia	LTR	330	short	6	low	8196687	chromoarm	561	no-CHH	no-CHH	.	.	.	.	.
Chr3	5406437	5406473	AT3TE22710	.	-	ATREP10D	Helitron	RC	36	tiny	1295	high	8183284	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	5406478	5406576	AT3TE22715	.	+	HELITRONY1B	Helitron	RC	98	tiny	414	high	8183181	chromoarm	17	no-CHH	no-CHH	.	.	.	.	.
Chr3	5406576	5406638	AT3TE22720	.	+	HELITRONY1B	Helitron	RC	62	tiny	414	high	8183119	chromoarm	115	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	5406638	5407771	AT3TE22725	.	+	HELITRONY1B	Helitron	RC	1133	short	414	high	8181986	chromoarm	177	no-CHH	no-CHH	.	.	.	.	.
Chr3	5407771	5407858	AT3TE22730	.	+	HELITRONY3	Helitron	RC	87	tiny	1399	high	8181899	chromoarm	1123	no-CHH	no-CHH	.	.	.	.	.
Chr3	5422579	5423364	AT3TE22790	.	+	HELITRONY3	Helitron	RC	785	short	1399	high	8166393	chromoarm	3716	no-CHH	no-CHH	.	.	.	.	.
Chr3	5465507	5465891	AT3TE22970	.	-	ATREP5	Helitron	RC	384	short	624	high	8123866	chromoarm	112	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	5488006	5488844	AT3TE23060	.	-	ATREP10D	Helitron	RC	838	short	1295	high	8100913	chromoarm	1038	no-CHH	no-CHH	.	.	.	.	.
Chr3	5495669	5495819	AT3TE23090	.	+	ATREP11	Helitron	RC	150	short	841	high	8093938	chromoarm	54	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	5495819	5496457	AT3TE23095	.	+	HELITRONY3	Helitron	RC	638	short	1399	high	8093300	chromoarm	204	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	5496457	5496697	AT3TE23100	.	+	BRODYAGA2	MuDR	DNA	240	short	525	high	8093060	chromoarm	842	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	5508536	5508812	AT3TE23150	.	+	TNAT1A	.	DNA	276	short	162	medium	8080945	chromoarm	216	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr3	5523880	5524023	AT3TE23210	.	+	ATMU1	MuDR	DNA	143	short	59	medium	8065734	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	5551508	5552376	AT3TE23330	.	-	ATREP10A	Helitron	RC	868	short	279	high	8037381	chromoarm	1974	no-CHH	no-CHH	.	.	.	.	.
Chr3	5569305	5570457	AT3TE23400	.	+	ATREP15	Helitron	RC	1152	short	1003	high	8019300	chromoarm	975	no-CHH	no-CHH	.	.	.	.	.
Chr3	5571152	5571249	AT3TE23405	.	-	ATREP16	MuDR	DNA	97	tiny	47	low	8018508	chromoarm	895	no-CHH	no-CHH	.	.	.	.	.
Chr3	5584482	5584812	AT3TE23460	.	-	ATLINEIII	L1	LINE	330	short	196	medium	8004945	chromoarm	354	PolIV-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	5590601	5590740	AT3TE23480	.	-	HELITRONY1A	Helitron	RC	139	short	271	high	7999017	chromoarm	809	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	5590740	5591635	AT3TE23485	.	-	ATREP1	Helitron	RC	895	short	498	high	7998122	chromoarm	948	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	5591635	5591780	AT3TE23490	.	+	ATREP1	Helitron	RC	145	short	498	high	7997977	chromoarm	1248	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	5605727	5606253	AT3TE23550	.	-	HELITRONY3	Helitron	RC	526	short	1399	high	7983504	chromoarm	238	no-CHH	no-CHH	.	.	.	.	.
Chr3	5616657	5616694	AT3TE23590	.	-	ATREP3	Helitron	RC	37	tiny	1439	high	7973063	chromoarm	417	no-CHH	no-CHH	.	.	.	.	.
Chr3	5616694	5617153	AT3TE23595	.	-	HELITRON2	Helitron	RC	459	short	194	medium	7972604	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	5621094	5621862	AT3TE23605	.	-	ATREP10D	Helitron	RC	768	short	1295	high	7967895	chromoarm	261	no-CHH	no-CHH	.	.	.	.	.
Chr3	5621862	5621889	AT3TE23610	.	-	ATREP10D	Helitron	RC	27	tiny	1295	high	7967868	chromoarm	1029	no-CHH	no-CHH	.	.	.	.	.
Chr3	5621889	5622026	AT3TE23615	.	+	ATREP3	Helitron	RC	137	short	1439	high	7967731	chromoarm	1056	no-CHH	no-CHH	.	.	.	.	.
Chr3	5622026	5622885	AT3TE23620	.	+	ATREP3	Helitron	RC	859	short	1439	high	7966872	chromoarm	1193	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	5622887	5623117	AT3TE23625	.	-	HELITRONY1D	Helitron	RC	230	short	756	high	7966640	chromoarm	1468	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	5623117	5623755	AT3TE23630	.	-	ATHATN7	HAT	DNA	638	short	71	medium	7966002	chromoarm	830	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	5623755	5624173	AT3TE23635	.	+	BRODYAGA2	MuDR	DNA	418	short	525	high	7965584	chromoarm	412	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	5632849	5632903	AT3TE23670	.	+	ATLINEIII	L1	LINE	54	tiny	196	medium	7956854	chromoarm	432	no-CHH	no-CHH	.	.	.	.	.
Chr3	5642948	5643530	AT3TE23710	.	+	BRODYAGA2	MuDR	DNA	582	short	525	high	7946227	chromoarm	273	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	5643109	5643465	AT3TE23715	.	-	BRODYAGA1A	MuDR	DNA	356	short	586	high	7946292	chromoarm	434	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	5651128	5652442	AT3TE23740	.	+	VANDAL22	MuDR	DNA	1314	short	48	low	7937315	chromoarm	72	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	5651496	5651517	AT3TE23745	.	+	VANDAL22	MuDR	DNA	21	tiny	48	low	7938240	chromoarm	440	no-CHH	no-CHH	.	.	.	.	.
Chr3	5651567	5651604	AT3TE23750	.	+	VANDAL22	MuDR	DNA	37	tiny	48	low	7938153	chromoarm	511	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	5679616	5680032	AT3TE23870	.	-	HELITRONY3	Helitron	RC	416	short	1399	high	7909725	chromoarm	1467	no-CHH	no-CHH	.	.	.	.	.
Chr3	5742336	5742494	AT3TE24140	.	+	VANDAL8	MuDR	DNA	158	short	123	medium	7847263	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	5743726	5745910	AT3TE24145	.	-	ATREP3	Helitron	RC	2184	medium	1439	high	7843847	chromoarm	684	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	5745910	5745973	AT3TE24150	.	-	ATREP3	Helitron	RC	63	tiny	1439	high	7843784	chromoarm	2718	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	5745973	5746006	AT3TE24155	.	-	HELITRONY1A	Helitron	RC	33	tiny	271	high	7843751	chromoarm	2685	no-CHH	no-CHH	.	.	.	.	.
Chr3	5771237	5772053	AT3TE24260	.	-	HELITRONY1E	Helitron	RC	816	short	447	high	7817704	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	5792275	5792481	AT3TE24350	.	+	ATREP10B	Helitron	RC	206	short	491	high	7797276	chromoarm	11	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	5792481	5793393	AT3TE24355	.	+	ATREP10	Helitron	RC	912	short	63	medium	7796364	chromoarm	217	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	5793393	5793670	AT3TE24360	.	+	ATREP10B	Helitron	RC	277	short	491	high	7796087	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	5814876	5815393	AT3TE24450	.	+	ATGP1	Gypsy	LTR	517	short	144	medium	7774364	chromoarm	1559	no-CHH	no-CHH	.	.	.	.	.
Chr3	5815401	5816073	AT3TE24455	.	+	ATHATN10	HAT	DNA	672	short	48	low	7773684	chromoarm	879	no-RdDM	no-CHH	.	.	.	.	.
Chr3	5816291	5816478	AT3TE24460	.	-	VANDAL1	MuDR	DNA	187	short	80	medium	7773279	chromoarm	474	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	5816200,5816400	5816619,5816590	+,+	transcript_id-"da1a5cac-6658-480f-bb34-eebd3fc3bafe|3",transcript_id-"676bb5d7-18ef-45c8-8bc9-85fc5601954e|197"
Chr3	5819998	5820324	AT3TE24470	.	-	BRODYAGA1A	MuDR	DNA	326	short	586	high	7769433	chromoarm	723	no-CHH	no-CHH	.	.	.	.	.
Chr3	5836323	5836565	AT3TE24540	.	+	DT1	Mariner	DNA	243	short	123	medium	7753192	chromoarm	4078	.	.	.	.	.	.	.
Chr3	5838104	5838298	AT3TE24545	.	-	VANDAL1	MuDR	DNA	194	short	80	medium	7751459	chromoarm	4111	no-CHH	no-CHH	.	.	.	.	.
Chr3	5839309	5839379	AT3TE24550	.	+	VANDAL13	MuDR	DNA	70	tiny	38	low	7750378	chromoarm	3030	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	5839379	5839970	AT3TE24555	.	+	HELITRONY1D	Helitron	RC	591	short	756	high	7749787	chromoarm	2439	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	5839970	5840164	AT3TE24560	.	-	ATENSPM5	En-Spm	DNA	194	short	111	medium	7749593	chromoarm	2245	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	5840180	5840256	AT3TE24565	.	+	ATN9_1	MuDR	DNA	76	tiny	65	medium	7749501	chromoarm	2153	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	5849937	5850122	AT3TE24600	.	-	ATREP4	Helitron	RC	185	short	832	high	7739635	chromoarm	393	no-CHH	no-CHH	.	.	.	.	.
Chr3	5850122	5851899	AT3TE24605	.	-	ATREP3	Helitron	RC	1777	short	1439	high	7737858	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	5851122	5851270	AT3TE24610	.	-	ATREP4	Helitron	RC	148	short	832	high	7738487	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	5851899	5852010	AT3TE24615	.	-	ATREP15	Helitron	RC	111	short	1003	high	7737747	chromoarm	196	no-CHH	no-CHH	.	.	.	.	.
Chr3	5852241	5852422	AT3TE24620	.	-	ATENSPM2	En-Spm	DNA	181	short	114	medium	7737335	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	5857593	5857691	AT3TE24640	.	+	ATDNAI27T9A	MuDR	DNA	98	tiny	116	medium	7732066	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	5863896	5864008	AT3TE24670	.	-	ATREP3	Helitron	RC	112	short	1439	high	7725749	chromoarm	3383	no-CHH	no-CHH	.	.	.	.	.
Chr3	5864008	5864617	AT3TE24675	.	-	ATREP3	Helitron	RC	609	short	1439	high	7725140	chromoarm	2774	no-CHH	no-CHH	.	.	.	.	.
Chr3	5864617	5865854	AT3TE24680	.	+	ATREP1	Helitron	RC	1237	short	498	high	7723903	chromoarm	1537	no-CHH	no-CHH	.	.	.	.	.
Chr3	5865854	5866442	AT3TE24685	.	+	ATREP2	Helitron	RC	588	short	164	medium	7723315	chromoarm	949	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	5869906	5870868	AT3TE24695	.	+	ATLINEIII	L1	LINE	962	short	196	medium	7718889	chromoarm	1725	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	5885492	5885881	AT3TE24750	.	-	HELITRONY1D	Helitron	RC	389	short	756	high	7703876	chromoarm	499	no-CHH	no-CHH	.	.	.	.	.
Chr3	5887504	5887820	AT3TE24755	.	+	BRODYAGA1A	MuDR	DNA	316	short	586	high	7701937	chromoarm	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	5896355	5896388	AT3TE24790	.	+	ARNOLD2	MuDR	DNA	33	tiny	68	medium	7693369	chromoarm	1613	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	5896388	5896594	AT3TE24795	.	+	ATMU1	MuDR	DNA	206	short	59	medium	7693163	chromoarm	1407	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	5896594	5896619	AT3TE24800	.	+	VANDAL8	MuDR	DNA	25	tiny	123	medium	7693138	chromoarm	1382	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	5900702	5901531	AT3TE24810	.	+	HELITRONY2	Helitron	RC	829	short	198	medium	7688226	chromoarm	65	no-CHH	no-CHH	.	.	.	.	.
Chr3	5905051	5906716	AT3TE24820	.	-	Unassigned	.	Unassigned	1665	short	.	low	7683041	chromoarm	438	no-CHH	no-CHH	ExpressedAndAnnotated	5906997	5904880	-	transcript_id-"cc76cedd-acdc-40ac-814a-74c931e411ca|3"
Chr3	5914105	5914381	AT3TE24850	.	-	ATCOPIA57	Copia	LTR	276	short	48	low	7675376	chromoarm	1045	no-CHH	no-CHH	.	.	.	.	.
Chr3	5927124	5927586	AT3TE24900	.	-	HELITRONY1B	Helitron	RC	462	short	414	high	7662171	chromoarm	278	no-CHH	no-CHH	.	.	.	.	.
Chr3	5927586	5928571	AT3TE24905	.	-	ATREP4	Helitron	RC	985	short	832	high	7661186	chromoarm	740	no-CHH	no-CHH	.	.	.	.	.
Chr3	5929424	5930702	AT3TE24910	.	+	ATDNAI27T9A	MuDR	DNA	1278	short	116	medium	7659055	chromoarm	2578	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	5981887	5981916	AT3TE25130	.	-	HELITRONY3	Helitron	RC	29	tiny	1399	high	7607841	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	5981916	5983138	AT3TE25135	.	+	ATREP3	Helitron	RC	1222	short	1439	high	7606619	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	6011399	6011487	AT3TE25250	.	-	ATLINE1_3A	L1	LINE	88	tiny	160	medium	7578270	chromoarm	841	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	6032632	6032879	AT3TE25340	.	+	VANDAL17	MuDR	DNA	247	short	178	medium	7556878	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	6052478	6052617	AT3TE25420	.	-	HELITRONY3	Helitron	RC	139	short	1399	high	7537140	chromoarm	29	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	6052617	6055313	AT3TE25425	.	+	ATREP4	Helitron	RC	2696	medium	832	high	7534444	chromoarm	168	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	6055313	6055365	AT3TE25430	.	+	ATREP4	Helitron	RC	52	tiny	832	high	7534392	chromoarm	231	no-CHH	no-CHH	.	.	.	.	.
Chr3	6055365	6055585	AT3TE25435	.	+	HELITRONY1B	Helitron	RC	220	short	414	high	7534172	chromoarm	11	no-CHH	no-CHH	.	.	.	.	.
Chr3	6073210	6073718	AT3TE25510	.	+	ATLINE1A	L1	LINE	508	short	289	high	7516039	chromoarm	396	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	6100798	6100823	AT3TE25630	.	+	ATREP11	Helitron	RC	25	tiny	841	high	7488934	chromoarm	1044	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr3	6100823	6100877	AT3TE25635	.	+	HELITRONY2	Helitron	RC	54	tiny	198	medium	7488880	chromoarm	990	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	6100877	6101623	AT3TE25640	.	+	BRODYAGA2	MuDR	DNA	746	short	525	high	7488134	chromoarm	244	no-CHH	no-RdDM	.	.	.	.	.
Chr3	6101623	6101674	AT3TE25645	.	+	ATREP10D	Helitron	RC	51	tiny	1295	high	7488083	chromoarm	193	no-CHH	no-RdDM	.	.	.	.	.
Chr3	6118738	6119361	AT3TE25710	.	+	HELITRONY1E	Helitron	RC	623	short	447	high	7470396	chromoarm	606	no-CHH	no-CHH	.	.	.	.	.
Chr3	6171479	6171666	AT3TE25930	.	-	ATENSPM5	En-Spm	DNA	187	short	111	medium	7418091	chromoarm	0	no-CHH	no-CHH	ExpressedAndAnnotated	6170538	6171631	+	transcript_id-"7ece571e-2c4c-4074-b9f5-9d8db05b8bea|13"
Chr3	6171908	6172225	AT3TE25935	.	+	HELITRONY1D	Helitron	RC	317	short	756	high	7417532	chromoarm	350	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	6172243	6173100	AT3TE25940	.	-	HELITRONY1B	Helitron	RC	857	short	414	high	7416657	chromoarm	685	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	6173100	6173164	AT3TE25945	.	+	ATREP3	Helitron	RC	64	tiny	1439	high	7416593	chromoarm	1542	no-CHH	no-CHH	.	.	.	.	.
Chr3	6174634	6174750	AT3TE25950	.	-	ARNOLD2	MuDR	DNA	116	short	68	medium	7415007	chromoarm	49	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	6247012	6247204	AT3TE26260	.	+	TSCL	.	LINE?	192	short	81	medium	7342553	chromoarm	1150	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	6267786	6267879	AT3TE26350	.	+	ATDNAI27T9B	MuDR	DNA	93	tiny	43	low	7321878	chromoarm	321	no-CHH	no-CHH	.	.	.	.	.
Chr3	6270554	6271043	AT3TE26360	.	+	ATREP4	Helitron	RC	489	short	832	high	7318714	chromoarm	1968	no-CHH	no-CHH	.	.	.	.	.
Chr3	6271043	6271211	AT3TE26365	.	+	BRODYAGA1A	MuDR	DNA	168	short	586	high	7318546	chromoarm	2457	no-CHH	no-CHH	.	.	.	.	.
Chr3	6271211	6271240	AT3TE26370	.	+	BRODYAGA1A	MuDR	DNA	29	tiny	586	high	7318517	chromoarm	2625	DCL3-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	6293600	6293655	AT3TE26470	.	+	BRODYAGA2	MuDR	DNA	55	tiny	525	high	7296102	chromoarm	362	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	6293655	6293946	AT3TE26475	.	-	ATREP5	Helitron	RC	291	short	624	high	7295811	chromoarm	71	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	6314023	6314262	AT3TE26560	.	-	ATENSPM1A	En-Spm	DNA	239	short	77	medium	7275495	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	6322488	6322916	AT3TE26600	.	+	BRODYAGA2	MuDR	DNA	428	short	525	high	7266841	chromoarm	286	no-CHH	no-CHH	.	.	.	.	.
Chr3	6335877	6336593	AT3TE26660	.	+	ARNOLDY2	MuDR	DNA	716	short	288	high	7253164	chromoarm	179	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	6344759	6344828	AT3TE26690	.	-	ATLINE1_3A	L1	LINE	69	tiny	160	medium	7244929	chromoarm	1581	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	6344889	6344993	AT3TE26695	.	-	ATLINE1_3A	L1	LINE	104	short	160	medium	7244764	chromoarm	1711	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	6345689	6346042	AT3TE26700	.	+	ATREP5	Helitron	RC	353	short	624	high	7243715	chromoarm	2511	no-CHH	no-CHH	.	.	.	.	.
Chr3	6347917	6348514	AT3TE26705	.	-	HELITRON2	Helitron	RC	597	short	194	medium	7241243	chromoarm	575	no-CHH	no-CHH	.	.	.	.	.
Chr3	6348514	6348644	AT3TE26710	.	-	ATREP5	Helitron	RC	130	short	624	high	7241113	chromoarm	445	no-CHH	no-CHH	.	.	.	.	.
Chr3	6365649	6366071	AT3TE26780	.	-	ARNOLDY2	MuDR	DNA	422	short	288	high	7223686	chromoarm	250	no-CHH	no-CHH	.	.	.	.	.
Chr3	6366071	6366115	AT3TE26785	.	-	HELITRONY3	Helitron	RC	44	tiny	1399	high	7223642	chromoarm	672	no-CHH	no-CHH	.	.	.	.	.
Chr3	6366115	6366740	AT3TE26790	.	-	HELITRONY3	Helitron	RC	625	short	1399	high	7223017	chromoarm	716	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	6381483	6381537	AT3TE26850	.	-	ATREP10D	Helitron	RC	54	tiny	1295	high	7208220	chromoarm	2231	no-CHH	no-CHH	.	.	.	.	.
Chr3	6381537	6383132	AT3TE26855	.	-	ATREP3	Helitron	RC	1595	short	1439	high	7206625	chromoarm	636	no-CHH	no-CHH	.	.	.	.	.
Chr3	6383132	6383163	AT3TE26860	.	-	HELITRONY1D	Helitron	RC	31	tiny	756	high	7206594	chromoarm	605	no-CHH	no-CHH	.	.	.	.	.
Chr3	6383163	6383196	AT3TE26865	.	+	ATREP3	Helitron	RC	33	tiny	1439	high	7206561	chromoarm	572	no-CHH	no-CHH	.	.	.	.	.
Chr3	6383196	6383268	AT3TE26870	.	+	ATREP15	Helitron	RC	72	tiny	1003	high	7206489	chromoarm	500	no-CHH	no-CHH	.	.	.	.	.
Chr3	6386660	6386748	AT3TE26880	.	-	ATENSPM10	En-Spm	DNA	88	tiny	81	medium	7203009	chromoarm	1056	no-CHH	no-CHH	.	.	.	.	.
Chr3	6402748	6402965	AT3TE26950	.	+	ATENSPM5	En-Spm	DNA	217	short	111	medium	7186792	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	6403658	6403894	AT3TE26955	.	+	DT1	Mariner	DNA	236	short	123	medium	7185863	chromoarm	375	no-CHH	no-CHH	.	.	.	.	.
Chr3	6427021	6427435	AT3TE27050	.	+	BRODYAGA1A	MuDR	DNA	414	short	586	high	7162322	chromoarm	97	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	6430941	6431721	AT3TE27060	.	+	ATREP3	Helitron	RC	780	short	1439	high	7158036	chromoarm	0	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	6432933	6433394	AT3TE27065	.	-	ATREP15	Helitron	RC	461	short	1003	high	7156363	chromoarm	28	no-CHH	no-CHH	.	.	.	.	.
Chr3	6435006	6435148	AT3TE27070	.	+	ATMUN1	MuDR	DNA	142	short	107	medium	7154609	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	6458156	6458615	AT3TE27170	.	-	ATIS112A	Harbinger	DNA	459	short	173	medium	7131142	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	6458913	6459018	AT3TE27175	.	-	ATIS112A	Harbinger	DNA	105	short	173	medium	7130739	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	6463213	6463929	AT3TE27185	.	-	ATREP9	Helitron	RC	716	short	201	high	7125828	chromoarm	703	no-CHH	no-CHH	.	.	.	.	.
Chr3	6478385	6478610	AT3TE27240	.	-	ATHILA6A	Gypsy	LTR	225	short	247	high	7111147	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	6483179	6483302	AT3TE27250	.	-	ATCOPIA5	Copia	LTR	123	short	16	low	7106455	chromoarm	0	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	6483302	6483437	AT3TE27255	.	-	ATRE1	Copia	LTR	135	short	22	low	7106320	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	6486197	6486326	AT3TE27265	.	+	AT9NMU1	MuDR	DNA	129	short	45	low	7103431	chromoarm	192	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	6486326	6487244	AT3TE27270	.	-	AT9NMU1	MuDR	DNA	918	short	45	low	7102513	chromoarm	321	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	6530117	6530500	AT3TE27450	.	-	ATDNA2T9C	MuDR	DNA	383	short	242	high	7059257	chromoarm	1067	no-CHH	no-CHH	.	.	.	.	.
Chr3	6541000	6541252	AT3TE27490	.	+	ATCOPIA86	Copia	LTR	252	short	7	low	7048505	chromoarm	282	no-CHH	no-CHH	.	.	.	.	.
Chr3	6545674	6545726	AT3TE27500	.	-	ATGP9B	Gypsy	LTR	52	tiny	27	low	7044031	chromoarm	557	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	6559701	6559994	AT3TE27560	.	-	ATHILA6A	Gypsy	LTR	294	short	247	high	7029763	chromoarm	0	.	.	.	.	.	.	.
Chr3	6576402	6576462	AT3TE27630	.	-	ATREP10D	Helitron	RC	60	tiny	1295	high	7013295	chromoarm	1120	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	6576462	6577031	AT3TE27635	.	+	ATREP3	Helitron	RC	569	short	1439	high	7012726	chromoarm	1015	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	6610678	6610988	AT3TE27770	.	-	ATHILA6A	Gypsy	LTR	310	short	247	high	6978769	chromoarm	409	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	6621331	6622007	AT3TE27810	.	-	ATREP10D	Helitron	RC	676	short	1295	high	6967750	chromoarm	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	6623311	6623458	AT3TE27815	.	+	ATREP10A	Helitron	RC	147	short	279	high	6966299	chromoarm	75	no-CHH	no-CHH	.	.	.	.	.
Chr3	6623458	6623507	AT3TE27820	.	-	ATREP15	Helitron	RC	49	tiny	1003	high	6966250	chromoarm	222	no-CHH	no-CHH	.	.	.	.	.
Chr3	6623507	6624700	AT3TE27825	.	+	ATREP10B	Helitron	RC	1193	short	491	high	6965057	chromoarm	271	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	6624700	6625237	AT3TE27830	.	+	ATREP15	Helitron	RC	537	short	1003	high	6964520	chromoarm	340	no-CHH	no-CHH	.	.	.	.	.
Chr3	6684071	6684389	AT3TE28080	.	+	ATCOPIA54	Copia	LTR	318	short	18	low	6905368	chromoarm	270	no-CHH	no-CHH	.	.	.	.	.
Chr3	6686370	6686888	AT3TE28085	.	-	HELITRONY1D	Helitron	RC	518	short	756	high	6902869	chromoarm	1067	no-CHH	no-CHH	.	.	.	.	.
Chr3	6705956	6705985	AT3TE28160	.	-	HELITRONY1D	Helitron	RC	29	tiny	756	high	6883772	chromoarm	27	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	6705985	6706027	AT3TE28165	.	-	HELITRONY1D	Helitron	RC	42	tiny	756	high	6883730	chromoarm	56	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	6706027	6707225	AT3TE28170	.	+	ATREP10D	Helitron	RC	1198	short	1295	high	6882532	chromoarm	98	no-CHH	no-RdDM	.	.	.	.	.
Chr3	6716974	6718178	AT3TE28210	.	-	ATREP10D	Helitron	RC	1204	short	1295	high	6871579	chromoarm	1107	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	6718178	6718201	AT3TE28215	.	+	BRODYAGA2	MuDR	DNA	23	tiny	525	high	6871556	chromoarm	2311	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	6720091	6720787	AT3TE28220	.	-	HELITRON2	Helitron	RC	696	short	194	medium	6868970	chromoarm	2236	no-CHH	no-CHH	.	.	.	.	.
Chr3	6720787	6720967	AT3TE28225	.	+	ATREP3	Helitron	RC	180	short	1439	high	6868790	chromoarm	2056	no-CHH	no-CHH	.	.	.	.	.
Chr3	6728045	6728212	AT3TE28250	.	-	ATREP3	Helitron	RC	167	short	1439	high	6861545	chromoarm	1167	no-CHH	no-CHH	.	.	.	.	.
Chr3	6728212	6729552	AT3TE28255	.	-	ATREP1	Helitron	RC	1340	short	498	high	6860205	chromoarm	32	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	6730709	6731245	AT3TE28260	.	-	BRODYAGA2	MuDR	DNA	536	short	525	high	6858512	chromoarm	3	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	6731245	6731302	AT3TE28265	.	-	BRODYAGA2	MuDR	DNA	57	tiny	525	high	6858455	chromoarm	521	no-CHH	no-CHH	.	.	.	.	.
Chr3	6752117	6752218	AT3TE28350	.	+	ATREP10A	Helitron	RC	102	short	279	high	6837539	chromoarm	371	.	.	.	.	.	.	.
Chr3	6771214	6771726	AT3TE28430	.	+	ATREP10A	Helitron	RC	512	short	279	high	6818031	chromoarm	136	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	6771791	6771833	AT3TE28435	.	+	ATHATN4	HAT	DNA	42	tiny	56	medium	6817924	chromoarm	713	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	6771833	6772463	AT3TE28440	.	+	ATHATN3A	HAT	DNA	630	short	20	low	6817294	chromoarm	309	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	6777696	6777904	AT3TE28460	.	+	ATREP19	.	DNA	208	short	189	medium	6811853	chromoarm	2147	no-CHH	no-CHH	.	.	.	.	.
Chr3	6777904	6778702	AT3TE28465	.	-	ATREP3	Helitron	RC	798	short	1439	high	6811055	chromoarm	2059	no-CHH	no-CHH	.	.	.	.	.
Chr3	6778702	6778785	AT3TE28470	.	-	HELITRONY1B	Helitron	RC	83	tiny	414	high	6810972	chromoarm	1976	no-CHH	no-CHH	.	.	.	.	.
Chr3	6810150	6810438	AT3TE28600	.	-	ATTIRX1B	.	DNA	288	short	44	low	6779319	chromoarm	271	no-CHH	no-CHH	.	.	.	.	.
Chr3	6838112	6838898	AT3TE28720	.	-	ATREP15	Helitron	RC	786	short	1003	high	6750859	chromoarm	1530	no-CHH	no-CHH	.	.	.	.	.
Chr3	6874936	6875092	AT3TE28870	.	-	HARBINGER	Harbinger	DNA	156	short	90	medium	6714665	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	6906046	6906080	AT3TE29000	.	-	HELITRONY1B	Helitron	RC	34	tiny	414	high	6683677	chromoarm	183	no-CHH	no-CHH	.	.	.	.	.
Chr3	6906080	6906569	AT3TE29005	.	+	HELITRONY2	Helitron	RC	489	short	198	medium	6683188	chromoarm	217	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	6940023	6940414	AT3TE29140	.	-	ATREP10D	Helitron	RC	391	short	1295	high	6649343	chromoarm	48	no-CHH	no-CHH	.	.	.	.	.
Chr3	6940414	6942653	AT3TE29145	.	-	ATREP1	Helitron	RC	2239	medium	498	high	6647104	chromoarm	199	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	6942654	6942751	AT3TE29150	.	+	ATREP3	Helitron	RC	97	tiny	1439	high	6647006	chromoarm	101	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	6948106	6948525	AT3TE29170	.	-	ATDNA2T9B	MuDR	DNA	419	short	26	low	6641232	chromoarm	1261	no-CHH	no-CHH	.	.	.	.	.
Chr3	6978013	6978290	AT3TE29300	.	+	DT1	Mariner	DNA	277	short	123	medium	6611467	chromoarm	455	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	6983190	6983757	AT3TE29320	.	-	ATREP15	Helitron	RC	567	short	1003	high	6606000	chromoarm	297	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	6989089	6989199	AT3TE29340	.	+	HELITRONY3	Helitron	RC	110	short	1399	high	6600558	chromoarm	1054	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	6989199	6990167	AT3TE29345	.	-	ATREP10B	Helitron	RC	968	short	491	high	6599590	chromoarm	86	no-CHH	no-CHH	.	.	.	.	.
Chr3	6990167	6990207	AT3TE29350	.	-	BRODYAGA1	MuDR	DNA	40	tiny	251	high	6599550	chromoarm	46	no-CHH	no-CHH	.	.	.	.	.
Chr3	6990207	6990264	AT3TE29355	.	-	HELITRONY1E	Helitron	RC	57	tiny	447	high	6599493	chromoarm	0	no-RdDM	no-CHH	.	.	.	.	.
Chr3	6991495	6993208	AT3TE29360	.	-	ATREP10C	Helitron	RC	1713	short	123	medium	6596549	chromoarm	33	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	6993208	6993337	AT3TE29365	.	-	ATREP10D	Helitron	RC	129	short	1295	high	6596420	chromoarm	1746	no-CHH	no-CHH	.	.	.	.	.
Chr3	6993337	6993445	AT3TE29370	.	+	HELITRONY2	Helitron	RC	108	short	198	medium	6596312	chromoarm	1871	no-CHH	no-CHH	.	.	.	.	.
Chr3	7014150	7014531	AT3TE29460	.	+	ATRE1	Copia	LTR	381	short	22	low	6575226	chromoarm	2514	no-CHH	no-CHH	.	.	.	.	.
Chr3	7040412	7040475	AT3TE29570	.	-	RathE1_cons	.	RathE1_cons	63	tiny	213	high	6549282	chromoarm	383	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	7040845	7041553	AT3TE29575	.	-	TSCL	.	LINE?	708	short	81	medium	6548204	chromoarm	226	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	7047620	7047700	AT3TE29600	.	+	ATCOPIA59	Copia	LTR	80	tiny	20	low	6542057	chromoarm	194	no-CHH	no-CHH	.	.	.	.	.
Chr3	7094072	7094327	AT3TE29800	.	-	ATREP10A	Helitron	RC	255	short	279	high	6495430	chromoarm	650	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	7131443	7133024	AT3TE29960	.	+	ATREP15	Helitron	RC	1581	short	1003	high	6456733	chromoarm	204	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	7135607	7135879	AT3TE29970	.	-	BRODYAGA1A	MuDR	DNA	272	short	586	high	6453878	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	7140617	7141006	AT3TE29990	.	-	ATGP1	Gypsy	LTR	389	short	144	medium	6448751	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	7141883	7142255	AT3TE29995	.	-	ATREP5	Helitron	RC	372	short	624	high	6447502	chromoarm	734	no-CHH	no-CHH	.	.	.	.	.
Chr3	7142255	7143291	AT3TE30000	.	+	ATREP11	Helitron	RC	1036	short	841	high	6446466	chromoarm	254	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	7143291	7143365	AT3TE30005	.	+	HELITRONY1D	Helitron	RC	74	tiny	756	high	6446392	chromoarm	180	no-CHH	no-CHH	.	.	.	.	.
Chr3	7177302	7177561	AT3TE30150	.	+	VANDAL17	MuDR	DNA	259	short	178	medium	6412196	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	7181571	7181990	AT3TE30160	.	-	BRODYAGA2	MuDR	DNA	419	short	525	high	6407767	chromoarm	191	no-CHH	no-CHH	.	.	.	.	.
Chr3	7190824	7191437	AT3TE30200	.	-	ATREP15	Helitron	RC	613	short	1003	high	6398320	chromoarm	248	no-CHH	no-CHH	.	.	.	.	.
Chr3	7191437	7191584	AT3TE30205	.	-	HELITRONY3	Helitron	RC	147	short	1399	high	6398173	chromoarm	101	no-CHH	no-CHH	.	.	.	.	.
Chr3	7192832	7193937	AT3TE30210	.	+	ATREP4	Helitron	RC	1105	short	832	high	6395820	chromoarm	379	no-CHH	no-CHH	.	.	.	.	.
Chr3	7193938	7193990	AT3TE30215	.	-	HELITRONY1D	Helitron	RC	53	tiny	756	high	6395767	chromoarm	886	.	.	.	.	.	.	.
Chr3	7197598	7197653	AT3TE30225	.	-	HELITRONY1B	Helitron	RC	55	tiny	414	high	6392104	chromoarm	207	no-CHH	no-CHH	.	.	.	.	.
Chr3	7197653	7198378	AT3TE30230	.	+	HELITRON2	Helitron	RC	725	short	194	medium	6391379	chromoarm	262	no-CHH	no-CHH	.	.	.	.	.
Chr3	7217119	7217232	AT3TE30310	.	-	ATREP11	Helitron	RC	113	short	841	high	6372525	chromoarm	3920	no-CHH	no-CHH	.	.	.	.	.
Chr3	7217232	7218060	AT3TE30315	.	-	ATREP15	Helitron	RC	828	short	1003	high	6371697	chromoarm	3107	no-CHH	no-CHH	.	.	.	.	.
Chr3	7218060	7218317	AT3TE30320	.	-	HELITRON2	Helitron	RC	257	short	194	medium	6371440	chromoarm	2850	no-CHH	no-CHH	.	.	.	.	.
Chr3	7218317	7218348	AT3TE30325	.	-	ATREP10D	Helitron	RC	31	tiny	1295	high	6371409	chromoarm	2819	no-CHH	no-CHH	.	.	.	.	.
Chr3	7252851	7252981	AT3TE30470	.	+	ATLINE1A	L1	LINE	130	short	289	high	6336776	chromoarm	597	no-CHH	no-CHH	.	.	.	.	.
Chr3	7263371	7263652	AT3TE30510	.	+	BRODYAGA1A	MuDR	DNA	281	short	586	high	6326105	chromoarm	372	no-CHH	no-CHH	.	.	.	.	.
Chr3	7274547	7274766	AT3TE30560	.	-	VANDAL8	MuDR	DNA	219	short	123	medium	6314991	chromoarm	650	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	7290943	7291080	AT3TE30630	.	-	ATREP10A	Helitron	RC	137	short	279	high	6298677	chromoarm	4693	no-CHH	no-CHH	.	.	.	.	.
Chr3	7291080	7291966	AT3TE30635	.	-	ATREP10D	Helitron	RC	886	short	1295	high	6297791	chromoarm	4830	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	7291967	7292098	AT3TE30640	.	+	ATREP10D	Helitron	RC	131	short	1295	high	6297659	chromoarm	5717	RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr3	7292098	7292121	AT3TE30645	.	-	ATREP10B	Helitron	RC	23	tiny	491	high	6297636	chromoarm	5848	no-CHH	no-CHH	.	.	.	.	.
Chr3	7318049	7318379	AT3TE30750	.	+	HELITRONY1E	Helitron	RC	330	short	447	high	6271378	chromoarm	1559	no-CHH	RDR6-RdDM	.	.	.	.	.
Chr3	7318379	7319304	AT3TE30755	.	+	ATREP11	Helitron	RC	925	short	841	high	6270453	chromoarm	634	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	7319304	7319355	AT3TE30760	.	+	ATREP11A	Helitron	RC	51	tiny	95	medium	6270402	chromoarm	583	no-CHH	no-CHH	.	.	.	.	.
Chr3	7319355	7319375	AT3TE30765	.	+	HELITRONY1C	Helitron	RC	20	tiny	120	medium	6270382	chromoarm	563	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	7337740	7338119	AT3TE30840	.	-	TAG1	HAT	DNA	379	short	28	low	6251638	chromoarm	1612	no-CHH	no-CHH	.	.	.	.	.
Chr3	7338132	7338291	AT3TE30845	.	-	TAG1	HAT	DNA	159	short	28	low	6251466	chromoarm	1440	no-CHH	no-CHH	.	.	.	.	.
Chr3	7341908	7341946	AT3TE30855	.	-	ATREP5	Helitron	RC	38	tiny	624	high	6247811	chromoarm	390	no-CHH	no-CHH	.	.	.	.	.
Chr3	7341946	7342567	AT3TE30860	.	+	HELITRONY3	Helitron	RC	621	short	1399	high	6247190	chromoarm	107	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	7342567	7342608	AT3TE30865	.	+	RP1_AT	.	DNA	41	tiny	87	medium	6247149	chromoarm	66	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	7351608	7351842	AT3TE30900	.	+	ATCOPIA63	Copia	LTR	234	short	11	low	6237915	chromoarm	1539	no-CHH	no-CHH	.	.	.	.	.
Chr3	7353011	7353040	AT3TE30905	.	+	ATCOPIA36	Copia	LTR	29	tiny	14	low	6236717	chromoarm	2942	no-CHH	RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	7353040	7353274	AT3TE30910	.	+	ATCOPIA57	Copia	LTR	234	short	48	low	6236483	chromoarm	2971	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	7354399	7354602	AT3TE30915	.	+	ATCOPIA39	Copia	LTR	203	short	5	low	6235155	chromoarm	4330	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	7355354	7355869	AT3TE30920	.	-	ATTIR16T3A	.	DNA	515	short	106	medium	6233888	chromoarm	4689	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	7355873	7355942	AT3TE30925	.	-	ARNOLDY1	MuDR	DNA	69	tiny	237	high	6233815	chromoarm	4616	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	7358839	7360154	AT3TE30935	.	+	Unassigned	.	Unassigned	1315	short	.	low	6229603	chromoarm	404	no-CHH	no-CHH	.	.	.	.	.
Chr3	7360744	7361027	AT3TE30940	.	+	ATREP11	Helitron	RC	283	short	841	high	6228730	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	7361027	7361872	AT3TE30945	.	-	ATREP4	Helitron	RC	845	short	832	high	6227885	chromoarm	130	no-CHH	no-CHH	.	.	.	.	.
Chr3	7364737	7365130	AT3TE30955	.	+	ATCOPIA57	Copia	LTR	393	short	48	low	6224627	chromoarm	1656	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	7366209	7367748	AT3TE30960	.	+	Unassigned	.	Unassigned	1539	short	.	low	6222009	chromoarm	3128	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	7368266	7369526	AT3TE30965	.	+	Unassigned	.	Unassigned	1260	short	.	low	6220231	chromoarm	5185	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	7370167	7371403	AT3TE30970	.	+	Unassigned	.	Unassigned	1236	short	.	low	6218354	chromoarm	5357	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	7372759	7374364	AT3TE30975	.	+	Unassigned	.	Unassigned	1605	short	.	low	6215393	chromoarm	2396	no-CHH	no-CHH	ExpressedAndAnnotated	7372705	7374578	+	transcript_id-"051bdf6c-b515-491b-b812-ca5aea2027e8|6"
Chr3	7375157	7376420	AT3TE30980	.	+	Unassigned	.	Unassigned	1263	short	.	low	6213337	chromoarm	340	no-CHH	no-CHH	ExpressedAndAnnotated	7375087	7376650	+	transcript_id-"6588695d-aed6-4f64-8094-24e38459cc3c|11"
Chr3	7387947	7388318	AT3TE31030	.	-	ATCOPIA88	Copia	LTR	371	short	8	low	6201439	chromoarm	171	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	7398026	7398842	AT3TE31070	.	+	ATREP1	Helitron	RC	816	short	498	high	6190915	chromoarm	319	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	7398842	7398875	AT3TE31075	.	+	ATREP3	Helitron	RC	33	tiny	1439	high	6190882	chromoarm	286	no-CHH	no-CHH	.	.	.	.	.
Chr3	7419330	7419793	AT3TE31160	.	-	ATREP10D	Helitron	RC	463	short	1295	high	6169964	chromoarm	182	no-CHH	no-CHH	.	.	.	.	.
Chr3	7496459	7496635	AT3TE31490	.	+	ATREP10	Helitron	RC	176	short	63	medium	6093122	chromoarm	202	no-RdDM	no-CHH	.	.	.	.	.
Chr3	7502252	7503052	AT3TE31510	.	+	HELITRONY1A	Helitron	RC	800	short	271	high	6086705	chromoarm	940	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	7530892	7531287	AT3TE31630	.	-	ATDNA2T9A	MuDR	DNA	395	short	48	low	6058470	chromoarm	435	no-CHH	no-CHH	.	.	.	.	.
Chr3	7531287	7531320	AT3TE31635	.	+	ATREP4	Helitron	RC	33	tiny	832	high	6058437	chromoarm	650	no-CHH	no-CHH	.	.	.	.	.
Chr3	7531320	7531424	AT3TE31640	.	-	BRODYAGA2	MuDR	DNA	104	short	525	high	6058333	chromoarm	546	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	7539909	7540310	AT3TE31680	.	-	ATCOPIA78	Copia	LTR	401	short	24	low	6049447	chromoarm	1268	no-CHH	no-CHH	.	.	.	.	.
Chr3	7548606	7548656	AT3TE31720	.	-	ATIS112A	Harbinger	DNA	50	tiny	173	medium	6041101	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	7560244	7560463	AT3TE31770	.	+	RathE1_cons	.	RathE1_cons	220	short	213	high	6029294	chromoarm	286	.	.	.	.	.	.	.
Chr3	7594359	7594652	AT3TE31910	.	-	RathE2_cons	.	RathE2_cons	293	short	74	medium	5995105	chromoarm	1231	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	7637192	7637362	AT3TE32090	.	-	ATCOPIA13	Copia	LTR	170	short	35	low	5952395	chromoarm	1387	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	7638156	7638538	AT3TE32095	.	+	BRODYAGA1A	MuDR	DNA	382	short	586	high	5951219	chromoarm	211	no-CHH	no-CHH	.	.	.	.	.
Chr3	7642702	7642766	AT3TE32105	.	+	ATLINE1_3A	L1	LINE	65	tiny	160	medium	5946991	chromoarm	840	.	.	.	.	.	.	.
Chr3	7645455	7645603	AT3TE32115	.	-	ATHATN3	HAT	DNA	148	short	70	medium	5944154	chromoarm	0	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	7657964	7658019	AT3TE32160	.	-	ATREP3	Helitron	RC	55	tiny	1439	high	5931738	chromoarm	1741	no-CHH	no-CHH	.	.	.	.	.
Chr3	7658019	7658213	AT3TE32165	.	+	ATREP10B	Helitron	RC	194	short	491	high	5931544	chromoarm	1547	no-CHH	no-CHH	.	.	.	.	.
Chr3	7658213	7658269	AT3TE32170	.	+	DT1	Mariner	DNA	56	tiny	123	medium	5931488	chromoarm	1491	no-CHH	no-CHH	.	.	.	.	.
Chr3	7658269	7659418	AT3TE32175	.	-	ATREP2A	Helitron	RC	1149	short	116	medium	5930339	chromoarm	342	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	7659419	7659480	AT3TE32180	.	-	ATREP2A	Helitron	RC	62	tiny	116	medium	5930277	chromoarm	280	.	.	.	.	.	.	.
Chr3	7659481	7659520	AT3TE32185	.	-	ATREP2A	Helitron	RC	40	tiny	116	medium	5930237	chromoarm	240	.	.	.	.	.	.	.
Chr3	7659520	7659707	AT3TE32190	.	-	ATREP2	Helitron	RC	187	short	164	medium	5930050	chromoarm	53	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	7659707	7659750	AT3TE32195	.	-	HELITRONY3	Helitron	RC	43	tiny	1399	high	5930007	chromoarm	10	no-CHH	no-CHH	.	.	.	.	.
Chr3	7664016	7664467	AT3TE32205	.	-	ATREP11	Helitron	RC	451	short	841	high	5925290	chromoarm	97	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	7672166	7672307	AT3TE32230	.	-	ATREP3	Helitron	RC	141	short	1439	high	5917450	chromoarm	1037	no-CHH	no-CHH	.	.	.	.	.
Chr3	7672307	7673223	AT3TE32235	.	-	ATREP10D	Helitron	RC	916	short	1295	high	5916534	chromoarm	121	no-CHH	no-CHH	.	.	.	.	.
Chr3	7692797	7693336	AT3TE32310	.	-	HELITRONY3	Helitron	RC	539	short	1399	high	5896421	chromoarm	144	no-CHH	no-CHH	.	.	.	.	.
Chr3	7695889	7696811	AT3TE32320	.	-	ATREP6	Helitron	RC	922	short	181	medium	5892946	chromoarm	22	no-CHH	no-CHH	.	.	.	.	.
Chr3	7696811	7696921	AT3TE32325	.	+	HELITRONY1D	Helitron	RC	110	short	756	high	5892836	chromoarm	167	no-CHH	no-CHH	.	.	.	.	.
Chr3	7698848	7699532	AT3TE32330	.	+	HELITRONY3	Helitron	RC	684	short	1399	high	5890225	chromoarm	244	no-CHH	no-CHH	.	.	.	.	.
Chr3	7714257	7714347	AT3TE32390	.	-	ATREP13	Helitron	RC	90	tiny	106	medium	5875410	chromoarm	1045	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	7719533	7719803	AT3TE32410	.	+	ATHILA7	Gypsy	LTR	270	short	134	medium	5869954	chromoarm	888	no-CHH	no-CHH	.	.	.	.	.
Chr3	7721920	7722442	AT3TE32415	.	+	ATHILA7	Gypsy	LTR	522	short	134	medium	5867315	chromoarm	179	no-CHH	no-CHH	.	.	.	.	.
Chr3	7724316	7724341	AT3TE32420	.	+	HELITRONY2	Helitron	RC	25	tiny	198	medium	5865416	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	7724341	7725116	AT3TE32425	.	-	ATREP6	Helitron	RC	775	short	181	medium	5864641	chromoarm	3	no-CHH	no-CHH	.	.	.	.	.
Chr3	7725116	7725141	AT3TE32430	.	+	BRODYAGA1A	MuDR	DNA	25	tiny	586	high	5864616	chromoarm	778	no-CHH	no-CHH	.	.	.	.	.
Chr3	7733811	7734169	AT3TE32470	.	+	ATREP5	Helitron	RC	358	short	624	high	5855588	chromoarm	226	no-CHH	no-CHH	.	.	.	.	.
Chr3	7734507	7734537	AT3TE32475	.	-	ATREP10A	Helitron	RC	30	tiny	279	high	5855220	chromoarm	0	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	7734537	7734570	AT3TE32480	.	+	BRODYAGA2	MuDR	DNA	33	tiny	525	high	5855187	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	7734570	7735073	AT3TE32485	.	-	ATREP9	Helitron	RC	503	short	201	high	5854684	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	7753554	7753722	AT3TE32560	.	-	ATCOPIA67	Copia	LTR	168	short	15	low	5836035	chromoarm	430	no-CHH	no-CHH	.	.	.	.	.
Chr3	7761281	7761582	AT3TE32590	.	-	ATCOPIA78	Copia	LTR	301	short	24	low	5828175	chromoarm	224	no-CHH	no-CHH	.	.	.	.	.
Chr3	7765550	7766063	AT3TE32600	.	+	ATREP19	.	DNA	513	short	189	medium	5823694	chromoarm	407	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	7766063	7766760	AT3TE32605	.	+	ATREP2	Helitron	RC	697	short	164	medium	5822997	chromoarm	672	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	7766761	7766842	AT3TE32610	.	-	ATREP13	Helitron	RC	82	tiny	106	medium	5822915	chromoarm	590	.	.	.	.	.	.	.
Chr3	7772782	7772943	AT3TE32640	.	+	RathE1_cons	.	RathE1_cons	161	short	213	high	5816814	chromoarm	645	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	7776213	7776579	AT3TE32650	.	-	ATREP1	Helitron	RC	366	short	498	high	5813178	chromoarm	147	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	7776579	7776688	AT3TE32655	.	+	BRODYAGA1A	MuDR	DNA	109	short	586	high	5813069	chromoarm	513	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	7785543	7785695	AT3TE32690	.	-	AT9TSD1	MuDR	DNA	152	short	55	medium	5804062	chromoarm	1074	no-CHH	no-CHH	.	.	.	.	.
Chr3	7785695	7786607	AT3TE32695	.	-	ATREP11	Helitron	RC	912	short	841	high	5803150	chromoarm	1226	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	7788346	7789324	AT3TE32700	.	-	ATREP6	Helitron	RC	978	short	181	medium	5800433	chromoarm	489	no-CHH	no-CHH	.	.	.	.	.
Chr3	7795544	7795980	AT3TE32730	.	+	ATGP1	Gypsy	LTR	436	short	144	medium	5793777	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	7798520	7798556	AT3TE32740	.	-	ATCOPIA60	Copia	LTR	36	tiny	4	low	5791201	chromoarm	2233	no-CHH	no-CHH	.	.	.	.	.
Chr3	7798556	7798791	AT3TE32745	.	+	ATCOPIA51	Copia	LTR	235	short	14	low	5790966	chromoarm	2269	no-CHH	no-CHH	.	.	.	.	.
Chr3	7799063	7799798	AT3TE32750	.	+	ATLINE2	L1	LINE	735	short	138	medium	5789959	chromoarm	2776	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	7800056	7800374	AT3TE32755	.	-	ATGP8	Gypsy	LTR	318	short	92	medium	5789383	chromoarm	3229	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	7801783	7801923	AT3TE32760	.	-	ATLINE2	L1	LINE	140	short	138	medium	5787834	chromoarm	1680	no-CHH	no-CHH	.	.	.	.	.
Chr3	7802088	7802396	AT3TE32765	.	-	ATLINE1_2	L1	LINE	308	short	41	low	5787361	chromoarm	1207	no-CHH	no-CHH	.	.	.	.	.
Chr3	7805457	7805583	AT3TE32775	.	-	VANDAL8	MuDR	DNA	127	short	123	medium	5784174	chromoarm	0	.	.	.	.	.	.	.
Chr3	7806212	7806366	AT3TE32780	.	-	VANDAL8	MuDR	DNA	155	short	123	medium	5783391	chromoarm	0	.	.	.	.	.	.	.
Chr3	7806865	7807215	AT3TE32785	.	-	ATCOPIA5	Copia	LTR	350	short	16	low	5782542	chromoarm	0	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	7810768	7812103	AT3TE32795	.	-	ATREP10D	Helitron	RC	1335	short	1295	high	5777654	chromoarm	924	no-CHH	no-CHH	.	.	.	.	.
Chr3	7815815	7815878	AT3TE32805	.	-	ATREP15	Helitron	RC	63	tiny	1003	high	5773879	chromoarm	325	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	7815878	7816773	AT3TE32810	.	-	ATREP19	.	DNA	895	short	189	medium	5772984	chromoarm	388	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	7816773	7816805	AT3TE32815	.	+	ATREP4	Helitron	RC	32	tiny	832	high	5772952	chromoarm	1283	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	7821570	7822202	AT3TE32830	.	+	HELITRON2	Helitron	RC	632	short	194	medium	5767555	chromoarm	156	no-CHH	no-CHH	ExpressedAndAnnotated	7826075,7822416	7822029,7822077	-,-	transcript_id-"0f4cbe55-22da-457b-bae7-085ac3ed3ccc|12",transcript_id-"8dee1182-36d9-4e04-8d4b-7a05ca1fa00b|6"
Chr3	7841285	7841608	AT3TE32910	.	-	TAG1	HAT	DNA	323	short	28	low	5748149	chromoarm	1854	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	7843681	7843739	AT3TE32915	.	-	TAG2	HAT	DNA	58	tiny	86	medium	5746018	chromoarm	396	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	7844797	7845054	AT3TE32920	.	+	ATLINE1_1	L1	LINE	257	short	61	medium	5744703	chromoarm	254	no-CHH	no-CHH	.	.	.	.	.
Chr3	7845324	7845396	AT3TE32925	.	+	ATLINE1_1	L1	LINE	72	tiny	61	medium	5744361	chromoarm	683	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	7848501	7849375	AT3TE32935	.	+	ATREP5	Helitron	RC	874	short	624	high	5740382	chromoarm	1938	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	7850390	7851163	AT3TE32940	.	-	ATREP15	Helitron	RC	773	short	1003	high	5738594	chromoarm	3532	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	7851660	7851837	AT3TE32945	.	-	VANDAL22	MuDR	DNA	178	short	48	low	5737920	chromoarm	2858	.	.	.	.	.	.	.
Chr3	7856004	7856093	AT3TE32955	.	+	HELITRONY1C	Helitron	RC	89	tiny	120	medium	5733664	chromoarm	390	no-CHH	no-CHH	.	.	.	.	.
Chr3	7856093	7856978	AT3TE32960	.	-	ATREP3	Helitron	RC	885	short	1439	high	5732779	chromoarm	479	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	7856978	7857292	AT3TE32965	.	+	HELITRONY1B	Helitron	RC	314	short	414	high	5732465	chromoarm	1364	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	7858281	7859730	AT3TE32970	.	-	HELITRONY1E	Helitron	RC	1449	short	447	high	5730027	chromoarm	2667	no-RdDM	no-CHH	.	.	.	.	.
Chr3	7860751	7860928	AT3TE32975	.	-	VANDAL22	MuDR	DNA	178	short	48	low	5728829	chromoarm	2859	.	.	.	.	.	.	.
Chr3	7870359	7870798	AT3TE33010	.	+	ATREP7	Helitron	RC	439	short	164	medium	5718959	chromoarm	306	no-CHH	no-CHH	.	.	.	.	.
Chr3	7895254	7895509	AT3TE33110	.	-	HELITRONY3	Helitron	RC	255	short	1399	high	5694248	chromoarm	109	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	7895509	7896042	AT3TE33115	.	+	TAG3N1	HAT	DNA	533	short	97	medium	5693715	chromoarm	364	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	7897508	7897535	AT3TE33120	.	+	ATCOPIA13	Copia	LTR	27	tiny	35	low	5692222	chromoarm	1679	no-CHH	no-CHH	.	.	.	.	.
Chr3	7897535	7898460	AT3TE33125	.	+	ATCOPIA14	Copia	LTR	925	short	7	low	5691297	chromoarm	754	no-CHH	no-CHH	.	.	.	.	.
Chr3	7898561	7898693	AT3TE33130	.	-	RathE1_cons	.	RathE1_cons	132	short	213	high	5691064	chromoarm	521	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	7905729	7906353	AT3TE33160	.	+	ATHATN6	HAT	DNA	624	short	43	low	5683404	chromoarm	345	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	7910387	7911106	AT3TE33170	.	-	ATREP11	Helitron	RC	719	short	841	high	5678651	chromoarm	1971	no-CHH	no-CHH	.	.	.	.	.
Chr3	7911666	7912074	AT3TE33175	.	-	BRODYAGA1	MuDR	DNA	408	short	251	high	5677683	chromoarm	1106	no-CHH	no-CHH	.	.	.	.	.
Chr3	7919958	7920883	AT3TE33200	.	-	ATREP10D	Helitron	RC	925	short	1295	high	5668874	chromoarm	991	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	7920883	7922456	AT3TE33205	.	-	ATREP10B	Helitron	RC	1573	short	491	high	5667301	chromoarm	1916	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	7922459	7922522	AT3TE33210	.	-	ATREP10A	Helitron	RC	63	tiny	279	high	5667235	chromoarm	3492	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	7923515	7924042	AT3TE33215	.	+	ATDNA2T9C	MuDR	DNA	527	short	242	high	5665715	chromoarm	2968	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	7924321	7924499	AT3TE33220	.	+	RathE1_cons	.	RathE1_cons	179	short	213	high	5665258	chromoarm	2511	.	.	.	.	.	.	.
Chr3	7925838	7926651	AT3TE33225	.	-	HELITRONY3	Helitron	RC	813	short	1399	high	5663106	chromoarm	359	no-CHH	no-CHH	.	.	.	.	.
Chr3	7931192	7931225	AT3TE33235	.	-	HELITRONY1D	Helitron	RC	33	tiny	756	high	5658532	chromoarm	25	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	7931225	7931253	AT3TE33240	.	+	HELITRONY2	Helitron	RC	28	tiny	198	medium	5658504	chromoarm	58	no-CHH	no-CHH	.	.	.	.	.
Chr3	7931253	7931878	AT3TE33245	.	+	BRODYAGA2	MuDR	DNA	625	short	525	high	5657879	chromoarm	86	no-CHH	no-CHH	.	.	.	.	.
Chr3	7936904	7936984	AT3TE33260	.	-	ATREP3	Helitron	RC	80	tiny	1439	high	5652773	chromoarm	1240	no-CHH	no-CHH	.	.	.	.	.
Chr3	7936984	7937572	AT3TE33265	.	-	ATREP2A	Helitron	RC	588	short	116	medium	5652185	chromoarm	1320	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	7938283	7938343	AT3TE33270	.	+	HELITRONY2	Helitron	RC	60	tiny	198	medium	5651414	chromoarm	2619	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	7938343	7938933	AT3TE33275	.	+	HELITRON2	Helitron	RC	590	short	194	medium	5650824	chromoarm	2403	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	7978592	7978665	AT3TE33440	.	+	BRODYAGA1	MuDR	DNA	73	tiny	251	high	5611092	chromoarm	222	no-CHH	no-CHH	.	.	.	.	.
Chr3	7978665	7978693	AT3TE33445	.	+	BRODYAGA1A	MuDR	DNA	28	tiny	586	high	5611064	chromoarm	295	no-CHH	no-CHH	.	.	.	.	.
Chr3	7978693	7979925	AT3TE33450	.	+	BRODYAGA1	MuDR	DNA	1232	short	251	high	5609832	chromoarm	323	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	7979925	7980036	AT3TE33455	.	-	BRODYAGA1A	MuDR	DNA	111	short	586	high	5609721	chromoarm	1555	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	7980036	7980706	AT3TE33460	.	-	ATREP2	Helitron	RC	670	short	164	medium	5609051	chromoarm	1666	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	7980706	7980843	AT3TE33465	.	+	ATREP10B	Helitron	RC	137	short	491	high	5608914	chromoarm	2336	no-CHH	no-CHH	.	.	.	.	.
Chr3	7980843	7981053	AT3TE33470	.	+	ATREP10D	Helitron	RC	210	short	1295	high	5608704	chromoarm	2473	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	7981053	7982069	AT3TE33475	.	+	ATREP11	Helitron	RC	1016	short	841	high	5607688	chromoarm	2163	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	7982069	7982100	AT3TE33480	.	+	HELITRONY1B	Helitron	RC	31	tiny	414	high	5607657	chromoarm	2132	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	7982100	7982301	AT3TE33485	.	+	ATREP4	Helitron	RC	201	short	832	high	5607456	chromoarm	1931	no-CHH	no-CHH	.	.	.	.	.
Chr3	7993557	7994087	AT3TE33530	.	-	HELITRON4	Helitron	RC	530	short	199	medium	5595670	chromoarm	752	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	7994541	7994638	AT3TE33535	.	+	ATREP4	Helitron	RC	97	tiny	832	high	5595119	chromoarm	1736	no-CHH	no-CHH	.	.	.	.	.
Chr3	7994638	7994671	AT3TE33540	.	-	ATREP15	Helitron	RC	33	tiny	1003	high	5595086	chromoarm	1833	no-CHH	no-CHH	.	.	.	.	.
Chr3	7994671	7997039	AT3TE33545	.	+	ATREP3	Helitron	RC	2368	medium	1439	high	5592718	chromoarm	1866	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	7997039	7997337	AT3TE33550	.	+	ATREP3	Helitron	RC	298	short	1439	high	5592420	chromoarm	1577	no-CHH	no-CHH	.	.	.	.	.
Chr3	7997337	7997441	AT3TE33555	.	-	HELITRONY3	Helitron	RC	104	short	1399	high	5592316	chromoarm	1473	no-CHH	RDR6-RdDM	.	.	.	.	.
Chr3	8026061	8026134	AT3TE33670	.	-	BOMZH2	MuDR	DNA	73	tiny	47	low	5563623	chromoarm	67	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	8027305	8027374	AT3TE33675	.	+	HELITRONY2	Helitron	RC	69	tiny	198	medium	5562383	chromoarm	31	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	8027374	8027994	AT3TE33680	.	+	ATREP4	Helitron	RC	620	short	832	high	5561763	chromoarm	100	no-CHH	no-CHH	.	.	.	.	.
Chr3	8027994	8028040	AT3TE33685	.	-	HELITRONY1D	Helitron	RC	46	tiny	756	high	5561717	chromoarm	720	no-CHH	no-CHH	.	.	.	.	.
Chr3	8063125	8063307	AT3TE33830	.	-	VANDAL1	MuDR	DNA	182	short	80	medium	5526450	chromoarm	0	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	8074243	8074584	AT3TE33880	.	+	ATREP1	Helitron	RC	341	short	498	high	5515173	chromoarm	182	no-CHH	no-CHH	.	.	.	.	.
Chr3	8076245	8076807	AT3TE33885	.	-	ATREP10D	Helitron	RC	562	short	1295	high	5512950	chromoarm	2173	no-CHH	no-CHH	.	.	.	.	.
Chr3	8076807	8076857	AT3TE33890	.	-	ATREP15	Helitron	RC	50	tiny	1003	high	5512900	chromoarm	2123	no-CHH	no-CHH	.	.	.	.	.
Chr3	8093488	8095938	AT3TE33960	.	+	ATDNAI26T9	MuDR	DNA	2450	medium	25	low	5493819	chromoarm	240	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	8101038	8102913	AT3TE33980	.	-	LIMPET1	MuDR	DNA	1875	short	116	medium	5486844	chromoarm	298	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	8125724	8125824	AT3TE34080	.	-	ATCOPIA92	Copia	LTR	100	short	8	low	5463933	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	8126034	8126257	AT3TE34085	.	-	ATDNA2T9C	MuDR	DNA	223	short	242	high	5463500	chromoarm	199	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	8126257	8126287	AT3TE34090	.	-	ATDNA2T9A	MuDR	DNA	30	tiny	48	low	5463470	chromoarm	422	no-CHH	no-CHH	.	.	.	.	.
Chr3	8126419	8126907	AT3TE34095	.	+	ATREP10D	Helitron	RC	488	short	1295	high	5462850	chromoarm	584	no-CHH	no-CHH	.	.	.	.	.
Chr3	8129931	8130281	AT3TE34105	.	-	ATDNA2T9C	MuDR	DNA	350	short	242	high	5459476	chromoarm	1186	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	8131066	8131122	AT3TE34110	.	-	HELITRONY1B	Helitron	RC	57	tiny	414	high	5458635	chromoarm	345	.	.	.	.	.	.	.
Chr3	8131122	8131369	AT3TE34115	.	-	ATREP5	Helitron	RC	247	short	624	high	5458388	chromoarm	98	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr3	8138163	8138468	AT3TE34140	.	-	ATREP7	Helitron	RC	305	short	164	medium	5451289	chromoarm	650	no-CHH	no-CHH	.	.	.	.	.
Chr3	8138496	8138878	AT3TE34145	.	+	ATLINEIII	L1	LINE	382	short	196	medium	5450879	chromoarm	490	no-CHH	no-RdDM	.	.	.	.	.
Chr3	8138878	8139080	AT3TE34150	.	+	ATLINE1_3A	L1	LINE	202	short	160	medium	5450677	chromoarm	288	no-CHH	no-CHH	.	.	.	.	.
Chr3	8146030	8148464	AT3TE34180	.	+	ATREP10D	Helitron	RC	2434	medium	1295	high	5441293	chromoarm	3221	no-CHH	no-CHH	.	.	.	.	.
Chr3	8148464	8149179	AT3TE34185	.	+	ATREP3	Helitron	RC	715	short	1439	high	5440578	chromoarm	2973	no-CHH	no-CHH	.	.	.	.	.
Chr3	8149875	8150491	AT3TE34190	.	-	ATHATN2	HAT	DNA	616	short	46	low	5439266	chromoarm	1661	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	8157577	8157842	AT3TE34220	.	+	ATDNA2T9A	MuDR	DNA	265	short	48	low	5431915	chromoarm	2426	no-CHH	no-CHH	.	.	.	.	.
Chr3	8157842	8172569	AT3TE34225	.	+	ATREP10D	Helitron	RC	14727	long	1295	high	5417188	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	8158890	8159368	AT3TE34230	.	-	HELITRONY3	Helitron	RC	478	short	1399	high	5430389	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	8169970	8170713	AT3TE34280	.	-	ATREP10D	Helitron	RC	743	short	1295	high	5419044	chromoarm	1940	no-CHH	no-CHH	.	.	.	.	.
Chr3	8171144	8171479	AT3TE34285	.	+	ATREP4	Helitron	RC	335	short	832	high	5418278	chromoarm	1174	no-CHH	no-CHH	.	.	.	.	.
Chr3	8173653	8173865	AT3TE34290	.	-	ATCOPIA5	Copia	LTR	212	short	16	low	5415892	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	8180020	8180776	AT3TE34320	.	+	HELITRONY3	Helitron	RC	756	short	1399	high	5408981	chromoarm	277	no-CHH	no-CHH	.	.	.	.	.
Chr3	8185800	8186008	AT3TE34340	.	+	RathE2_cons	.	RathE2_cons	208	short	74	medium	5403749	chromoarm	71	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	8187977	8189358	AT3TE34345	.	-	ATREP4	Helitron	RC	1381	short	832	high	5400399	chromoarm	1087	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	8195019	8195406	AT3TE34360	.	-	BRODYAGA1A	MuDR	DNA	387	short	586	high	5394351	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	8198678	8199165	AT3TE34370	.	-	HELITRONY3	Helitron	RC	487	short	1399	high	5390592	chromoarm	1702	no-CHH	no-CHH	.	.	.	.	.
Chr3	8199182	8200517	AT3TE34375	.	-	ATREP10D	Helitron	RC	1335	short	1295	high	5389240	chromoarm	350	no-CHH	no-CHH	.	.	.	.	.
Chr3	8200517	8200632	AT3TE34380	.	-	HELITRONY3	Helitron	RC	115	short	1399	high	5389125	chromoarm	235	no-CHH	no-CHH	.	.	.	.	.
Chr3	8209483	8209755	AT3TE34420	.	-	SIMPLEHAT1	HAT	DNA	272	short	56	medium	5380002	chromoarm	302	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	8209822	8209850	AT3TE34425	.	-	TAG2	HAT	DNA	28	tiny	86	medium	5379907	chromoarm	641	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	8209850	8210857	AT3TE34430	.	-	TAG2	HAT	DNA	1007	short	86	medium	5378900	chromoarm	669	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	8211796	8211961	AT3TE34435	.	-	SIMPLEHAT1	HAT	DNA	165	short	56	medium	5377796	chromoarm	2571	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	8211961	8212353	AT3TE34440	.	-	ATCOPIA28	Copia	LTR	392	short	81	medium	5377404	chromoarm	2179	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	8212496	8213454	AT3TE34445	.	-	ATREP10D	Helitron	RC	958	short	1295	high	5376303	chromoarm	1078	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	8218663	8218702	AT3TE34460	.	-	ATREP11	Helitron	RC	39	tiny	841	high	5371055	chromoarm	1680	no-CHH	no-CHH	.	.	.	.	.
Chr3	8218702	8218829	AT3TE34465	.	-	HELITRONY1E	Helitron	RC	127	short	447	high	5370928	chromoarm	1719	no-CHH	no-CHH	.	.	.	.	.
Chr3	8218829	8219594	AT3TE34470	.	-	BRODYAGA2	MuDR	DNA	765	short	525	high	5370163	chromoarm	1126	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	8219594	8219661	AT3TE34475	.	+	ATREP1	Helitron	RC	67	tiny	498	high	5370096	chromoarm	1059	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	8219661	8219825	AT3TE34480	.	+	HELITRONY1E	Helitron	RC	164	short	447	high	5369932	chromoarm	895	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	8220043	8220664	AT3TE34485	.	-	ATREP10B	Helitron	RC	621	short	491	high	5369093	chromoarm	56	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	8230649	8230714	AT3TE34520	.	+	HELITRONY1E	Helitron	RC	65	tiny	447	high	5359043	chromoarm	1073	no-CHH	no-CHH	.	.	.	.	.
Chr3	8230714	8232502	AT3TE34525	.	-	HELITRONY3	Helitron	RC	1788	short	1399	high	5357255	chromoarm	1138	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	8232502	8232592	AT3TE34530	.	-	HELITRONY3	Helitron	RC	90	tiny	1399	high	5357165	chromoarm	2926	no-CHH	no-CHH	.	.	.	.	.
Chr3	8233889	8234166	AT3TE34535	.	+	BRODYAGA1	MuDR	DNA	277	short	251	high	5355591	chromoarm	4313	no-CHH	no-CHH	.	.	.	.	.
Chr3	8237700	8238186	AT3TE34545	.	-	ATREP10B	Helitron	RC	486	short	491	high	5351571	chromoarm	4317	no-CHH	no-CHH	.	.	.	.	.
Chr3	8247277	8247753	AT3TE34580	.	-	HELITRONY2	Helitron	RC	476	short	198	medium	5342004	chromoarm	2825	no-CHH	no-CHH	.	.	.	.	.
Chr3	8248325	8248815	AT3TE34585	.	-	BRODYAGA1A	MuDR	DNA	490	short	586	high	5340942	chromoarm	1763	PolIV-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	8248823	8249004	AT3TE34590	.	-	ATREP11	Helitron	RC	181	short	841	high	5340753	chromoarm	1574	no-CHH	no-CHH	.	.	.	.	.
Chr3	8262118	8262723	AT3TE34650	.	+	ATREP1	Helitron	RC	605	short	498	high	5327034	chromoarm	464	no-CHH	no-CHH	.	.	.	.	.
Chr3	8262723	8262791	AT3TE34655	.	-	ARNOLDY1	MuDR	DNA	68	tiny	237	high	5326966	chromoarm	1069	no-CHH	no-CHH	.	.	.	.	.
Chr3	8264844	8264966	AT3TE34660	.	-	ATREP3	Helitron	RC	122	short	1439	high	5324791	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	8264966	8265054	AT3TE34665	.	-	HELITRONY1B	Helitron	RC	88	tiny	414	high	5324703	chromoarm	0	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	8265054	8265936	AT3TE34670	.	-	ARNOLDY1	MuDR	DNA	882	short	237	high	5323821	chromoarm	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	8265936	8265977	AT3TE34675	.	+	ARNOLDY2	MuDR	DNA	41	tiny	288	high	5323780	chromoarm	240	no-CHH	no-CHH	.	.	.	.	.
Chr3	8265981	8267096	AT3TE34680	.	+	HELITRONY3	Helitron	RC	1115	short	1399	high	5322661	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	8267875	8267955	AT3TE34685	.	-	ATHPOGON3	Pogo	DNA	80	tiny	118	medium	5321802	chromoarm	309	no-CHH	no-CHH	.	.	.	.	.
Chr3	8275567	8276040	AT3TE34710	.	-	ATREP4	Helitron	RC	473	short	832	high	5313717	chromoarm	594	no-CHH	no-CHH	.	.	.	.	.
Chr3	8276040	8276264	AT3TE34715	.	+	DT1	Mariner	DNA	224	short	123	medium	5313493	chromoarm	866	no-CHH	DCL3-RdDM	.	.	.	.	.
Chr3	8276264	8276528	AT3TE34720	.	+	ATREP10D	Helitron	RC	264	short	1295	high	5313229	chromoarm	602	no-CHH	no-CHH	.	.	.	.	.
Chr3	8297255	8298161	AT3TE34810	.	-	ATREP4	Helitron	RC	906	short	832	high	5291596	chromoarm	894	no-CHH	no-CHH	.	.	.	.	.
Chr3	8303583	8303924	AT3TE34830	.	+	ATDNA12T3_2	.	DNA	341	short	660	high	5285833	chromoarm	2750	no-CHH	no-CHH	.	.	.	.	.
Chr3	8308070	8308549	AT3TE34840	.	+	ATREP3	Helitron	RC	479	short	1439	high	5281208	chromoarm	942	no-CHH	no-CHH	.	.	.	.	.
Chr3	8308549	8308809	AT3TE34845	.	+	ATTIRTA1	Tc1	DNA	260	short	95	medium	5280948	chromoarm	682	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	8320399	8320549	AT3TE34890	.	-	ATREP5	Helitron	RC	150	short	624	high	5269208	chromoarm	62	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	8320549	8321287	AT3TE34895	.	+	ATREP1	Helitron	RC	738	short	498	high	5268470	chromoarm	212	no-CHH	no-CHH	.	.	.	.	.
Chr3	8325053	8325532	AT3TE34905	.	+	BRODYAGA2	MuDR	DNA	479	short	525	high	5264225	chromoarm	944	no-CHH	no-CHH	.	.	.	.	.
Chr3	8328110	8328186	AT3TE34915	.	-	HELITRONY3	Helitron	RC	76	tiny	1399	high	5261571	chromoarm	100	no-CHH	no-CHH	.	.	.	.	.
Chr3	8328186	8330497	AT3TE34920	.	+	ATREP3	Helitron	RC	2311	medium	1439	high	5259260	chromoarm	176	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	8328598	8329494	AT3TE34925	.	+	ATREP1	Helitron	RC	896	short	498	high	5260263	chromoarm	588	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	8329494	8329540	AT3TE34930	.	+	ATREP11	Helitron	RC	46	tiny	841	high	5260217	chromoarm	1484	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	8330497	8330970	AT3TE34935	.	-	ATREP15	Helitron	RC	473	short	1003	high	5258787	chromoarm	2487	no-CHH	no-CHH	.	.	.	.	.
Chr3	8332089	8332378	AT3TE34940	.	+	RathE2_cons	.	RathE2_cons	289	short	74	medium	5257379	chromoarm	1142	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	8336651	8336830	AT3TE34950	.	-	ATREP9	Helitron	RC	179	short	201	high	5252927	chromoarm	749	no-CHH	no-CHH	.	.	.	.	.
Chr3	8336830	8337827	AT3TE34955	.	+	HELITRONY3	Helitron	RC	997	short	1399	high	5251930	chromoarm	928	no-CHH	no-CHH	.	.	.	.	.
Chr3	8343577	8343657	AT3TE34970	.	-	ATREP5	Helitron	RC	80	tiny	624	high	5246100	chromoarm	222	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	8343659	8345642	AT3TE34975	.	-	BRODYAGA1	MuDR	DNA	1983	short	251	high	5244115	chromoarm	0	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	8362056	8362626	AT3TE35040	.	-	ATREP4	Helitron	RC	570	short	832	high	5227131	chromoarm	1264	no-CHH	no-CHH	.	.	.	.	.
Chr3	8362880	8363411	AT3TE35045	.	-	HELITRONY3	Helitron	RC	531	short	1399	high	5226346	chromoarm	2088	no-CHH	no-CHH	.	.	.	.	.
Chr3	8363411	8366164	AT3TE35050	.	+	ATREP10D	Helitron	RC	2753	medium	1295	high	5223593	chromoarm	2619	no-CHH	no-CHH	.	.	.	.	.
Chr3	8366164	8366697	AT3TE35055	.	+	ATREP10D	Helitron	RC	533	short	1295	high	5223060	chromoarm	5372	no-CHH	no-CHH	.	.	.	.	.
Chr3	8366697	8366834	AT3TE35060	.	-	ATREP10D	Helitron	RC	137	short	1295	high	5222923	chromoarm	5905	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr3	8366834	8366922	AT3TE35065	.	+	ATREP11	Helitron	RC	88	tiny	841	high	5222835	chromoarm	6042	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	8368058	8368144	AT3TE35070	.	+	ATGP6	Gypsy	LTR	86	tiny	25	low	5221613	chromoarm	5802	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	8368710	8368731	AT3TE35075	.	+	HELITRONY3	Helitron	RC	21	tiny	1399	high	5221026	chromoarm	5215	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	8368731	8369399	AT3TE35080	.	+	ATREP15	Helitron	RC	668	short	1003	high	5220358	chromoarm	4547	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	8369399	8369569	AT3TE35085	.	+	ATREP4	Helitron	RC	170	short	832	high	5220188	chromoarm	4377	no-CHH	no-CHH	.	.	.	.	.
Chr3	8369961	8370075	AT3TE35090	.	-	ATREP3	Helitron	RC	114	short	1439	high	5219682	chromoarm	3871	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	8370076	8371163	AT3TE35095	.	+	ATREP15	Helitron	RC	1088	short	1003	high	5218594	chromoarm	2783	.	.	.	.	.	.	.
Chr3	8372023	8372776	AT3TE35100	.	-	HELITRONY2	Helitron	RC	753	short	198	medium	5216981	chromoarm	1170	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	8379783	8380063	AT3TE35130	.	+	ATSINE4	.	SINE	281	short	98	medium	5209694	chromoarm	1557	.	.	.	.	.	.	.
Chr3	8393421	8394671	AT3TE35190	.	-	ATREP3	Helitron	RC	1250	short	1439	high	5195086	chromoarm	179	no-CHH	no-CHH	.	.	.	.	.
Chr3	8394671	8394858	AT3TE35195	.	+	HELITRONY3	Helitron	RC	187	short	1399	high	5194899	chromoarm	1429	no-CHH	no-CHH	.	.	.	.	.
Chr3	8394858	8395119	AT3TE35200	.	+	ATREP5	Helitron	RC	261	short	624	high	5194638	chromoarm	1616	no-CHH	no-CHH	.	.	.	.	.
Chr3	8404281	8404369	AT3TE35240	.	-	ATCOPIA24	Copia	LTR	88	tiny	27	low	5185388	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	8406447	8406540	AT3TE35245	.	-	BRODYAGA1	MuDR	DNA	93	tiny	251	high	5183217	chromoarm	1763	no-CHH	no-CHH	.	.	.	.	.
Chr3	8406540	8409540	AT3TE35250	.	+	ATREP10A	Helitron	RC	3000	medium	279	high	5180217	chromoarm	942	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	8408201	8408901	+	transcript_id-"f38cb5de-7625-47bb-8af0-867bc262b580|3"
Chr3	8410612	8411270	AT3TE35255	.	-	ATHILA6A	Gypsy	LTR	658	short	247	high	5178487	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	8411459	8411634	AT3TE35260	.	-	VANDAL1	MuDR	DNA	175	short	80	medium	5178123	chromoarm	0	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr3	8411691	8411819	AT3TE35265	.	-	ATHILA4C	Gypsy	LTR	128	short	206	high	5177938	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	8419683	8419934	AT3TE35290	.	+	ATREP4	Helitron	RC	251	short	832	high	5169823	chromoarm	349	no-CHH	no-CHH	.	.	.	.	.
Chr3	8425793	8426325	AT3TE35320	.	-	ATMUN1	MuDR	DNA	532	short	107	medium	5163432	chromoarm	1378	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	8426325	8426566	AT3TE35325	.	+	HELITRONY1D	Helitron	RC	241	short	756	high	5163191	chromoarm	1504	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	8435175	8435618	AT3TE35360	.	-	ATREP5	Helitron	RC	443	short	624	high	5154139	chromoarm	1853	no-CHH	no-CHH	.	.	.	.	.
Chr3	8435618	8436398	AT3TE35365	.	+	ATREP11	Helitron	RC	780	short	841	high	5153359	chromoarm	1073	no-CHH	no-CHH	.	.	.	.	.
Chr3	8436398	8436557	AT3TE35370	.	-	BRODYAGA2	MuDR	DNA	159	short	525	high	5153200	chromoarm	914	no-CHH	no-CHH	.	.	.	.	.
Chr3	8443061	8443402	AT3TE35400	.	-	ATDNA2T9C	MuDR	DNA	341	short	242	high	5146355	chromoarm	262	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	8466736	8467392	AT3TE35500	.	+	ATREP5	Helitron	RC	656	short	624	high	5122365	chromoarm	245	no-CHH	no-CHH	.	.	.	.	.
Chr3	8491518	8491811	AT3TE35600	.	-	ATDNA2T9C	MuDR	DNA	293	short	242	high	5097946	chromoarm	1651	no-CHH	no-RdDM	.	.	.	.	.
Chr3	8491811	8491944	AT3TE35605	.	-	ATREP9	Helitron	RC	133	short	201	high	5097813	chromoarm	1944	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	8491944	8493412	AT3TE35610	.	-	META1	Copia	LTR	1468	short	138	medium	5096345	chromoarm	2077	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	8494372	8495155	AT3TE35615	.	-	ATREP11	Helitron	RC	783	short	841	high	5094602	chromoarm	1534	no-CHH	no-CHH	.	.	.	.	.
Chr3	8495155	8495237	AT3TE35620	.	+	HELITRONY3	Helitron	RC	82	tiny	1399	high	5094520	chromoarm	1452	no-CHH	no-CHH	.	.	.	.	.
Chr3	8496023	8496048	AT3TE35625	.	-	ATREP19	.	DNA	25	tiny	189	medium	5093709	chromoarm	641	no-CHH	no-CHH	.	.	.	.	.
Chr3	8496048	8496526	AT3TE35630	.	+	ATREP19	.	DNA	478	short	189	medium	5093231	chromoarm	163	no-CHH	no-CHH	.	.	.	.	.
Chr3	8510082	8510115	AT3TE35690	.	-	HELITRON4	Helitron	RC	34	tiny	199	medium	5079642	chromoarm	573	.	.	.	.	.	.	.
Chr3	8510115	8510650	AT3TE35695	.	-	HELITRONY1D	Helitron	RC	535	short	756	high	5079107	chromoarm	38	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	8510650	8511094	AT3TE35700	.	-	HELITRONY3	Helitron	RC	444	short	1399	high	5078663	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	8512038	8512444	AT3TE35705	.	+	ATREP15	Helitron	RC	406	short	1003	high	5077313	chromoarm	842	no-CHH	no-CHH	.	.	.	.	.
Chr3	8512451	8512911	AT3TE35710	.	+	ATHATN5	HAT	DNA	460	short	42	low	5076846	chromoarm	754	no-RdDM	no-CHH	.	.	.	.	.
Chr3	8530888	8531137	AT3TE35790	.	-	ATENSPM5	En-Spm	DNA	249	short	111	medium	5058620	chromoarm	233	no-CHH	no-CHH	.	.	.	.	.
Chr3	8531218	8531336	AT3TE35795	.	-	ATDNAI27T9A	MuDR	DNA	118	short	116	medium	5058421	chromoarm	352	no-CHH	no-CHH	.	.	.	.	.
Chr3	8537324	8537354	AT3TE35820	.	+	ATGP7	Gypsy	LTR	30	tiny	47	low	5052403	chromoarm	51	no-RdDM	no-CHH	.	.	.	.	.
Chr3	8537354	8543559	AT3TE35825	.	+	ATGP7	Gypsy	LTR	6205	long	47	low	5046198	chromoarm	81	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	8543559	8544240	AT3TE35830	.	+	HELITRONY3	Helitron	RC	681	short	1399	high	5045517	chromoarm	622	no-RdDM	no-CHH	.	.	.	.	.
Chr3	8544240	8544511	AT3TE35835	.	-	HELITRONY3	Helitron	RC	271	short	1399	high	5045246	chromoarm	351	no-CHH	no-CHH	.	.	.	.	.
Chr3	8589946	8590551	AT3TE36020	.	-	ATREP5	Helitron	RC	605	short	624	high	4999206	chromoarm	275	no-CHH	no-CHH	.	.	.	.	.
Chr3	8594573	8594708	AT3TE36030	.	-	VANDAL18	MuDR	DNA	135	short	14	low	4995049	chromoarm	4902	no-CHH	no-CHH	.	.	.	.	.
Chr3	8595575	8596060	AT3TE36035	.	+	HELITRONY3	Helitron	RC	485	short	1399	high	4993697	chromoarm	5904	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr3	8596060	8597767	AT3TE36040	.	-	ATREP1	Helitron	RC	1707	short	498	high	4991990	chromoarm	5877	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	8597767	8597942	AT3TE36045	.	+	ATREP10B	Helitron	RC	175	short	491	high	4991815	chromoarm	5702	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	8597942	8598014	AT3TE36050	.	-	RathE1_cons	.	RathE1_cons	72	tiny	213	high	4991743	chromoarm	5630	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	8602321	8602389	AT3TE36060	.	-	HELITRONY1B	Helitron	RC	68	tiny	414	high	4987368	chromoarm	1255	no-CHH	no-CHH	.	.	.	.	.
Chr3	8602389	8603198	AT3TE36065	.	+	ATREP11	Helitron	RC	809	short	841	high	4986559	chromoarm	446	no-CHH	no-CHH	.	.	.	.	.
Chr3	8613355	8613439	AT3TE36100	.	-	ATREP5	Helitron	RC	84	tiny	624	high	4976318	chromoarm	796	no-CHH	no-CHH	.	.	.	.	.
Chr3	8613439	8614697	AT3TE36105	.	-	HELITRONY1B	Helitron	RC	1258	short	414	high	4975060	chromoarm	866	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	8614697	8614947	AT3TE36110	.	+	HELITRONY1D	Helitron	RC	250	short	756	high	4974810	chromoarm	616	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	8614947	8615108	AT3TE36115	.	-	ATREP4	Helitron	RC	161	short	832	high	4974649	chromoarm	455	RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	8624671	8624821	AT3TE36150	.	+	ARNOLD2	MuDR	DNA	150	short	68	medium	4964936	chromoarm	109	no-CHH	no-CHH	.	.	.	.	.
Chr3	8624821	8624886	AT3TE36155	.	+	ARNOLD2	MuDR	DNA	65	tiny	68	medium	4964871	chromoarm	44	no-CHH	no-CHH	.	.	.	.	.
Chr3	8644446	8644606	AT3TE36230	.	-	HELITRONY1C	Helitron	RC	160	short	120	medium	4945151	chromoarm	247	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	8644606	8645385	AT3TE36235	.	+	ATREP2A	Helitron	RC	779	short	116	medium	4944372	chromoarm	407	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	8645385	8645445	AT3TE36240	.	+	ATREP5	Helitron	RC	60	tiny	624	high	4944312	chromoarm	1186	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	8654690	8654819	AT3TE36280	.	-	RathE1_cons	.	RathE1_cons	129	short	213	high	4934938	chromoarm	446	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	8659992	8660135	AT3TE36300	.	-	RathE1_cons	.	RathE1_cons	143	short	213	high	4929622	chromoarm	311	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	8684419	8685340	AT3TE36400	.	-	ATREP15	Helitron	RC	921	short	1003	high	4904417	chromoarm	719	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	8684946	8685109	AT3TE36405	.	-	ATDNATA1	Mariner	DNA	163	short	28	low	4904648	chromoarm	950	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	8695899	8696410	AT3TE36450	.	-	ATMU10	MuDR	DNA	511	short	87	medium	4893347	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	8696410	8696806	AT3TE36455	.	+	VANDAL17	MuDR	DNA	396	short	178	medium	4892951	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	8697346	8697674	AT3TE36460	.	-	ATHATN5	HAT	DNA	328	short	42	low	4892083	chromoarm	163	no-CHH	no-CHH	.	.	.	.	.
Chr3	8702619	8702944	AT3TE36480	.	-	BRODYAGA1A	MuDR	DNA	325	short	586	high	4886813	chromoarm	309	no-CHH	no-CHH	.	.	.	.	.
Chr3	8708367	8708784	AT3TE36500	.	+	HELITRONY3	Helitron	RC	417	short	1399	high	4880973	chromoarm	219	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	8708784	8711124	AT3TE36505	.	-	HELITRONY3	Helitron	RC	2340	medium	1399	high	4878633	chromoarm	538	no-CHH	no-CHH	.	.	.	.	.
Chr3	8720578	8721808	AT3TE36540	.	+	ATREP5	Helitron	RC	1230	short	624	high	4867949	chromoarm	2464	no-CHH	no-CHH	.	.	.	.	.
Chr3	8721808	8721889	AT3TE36545	.	+	BRODYAGA1A	MuDR	DNA	81	tiny	586	high	4867868	chromoarm	2383	no-CHH	no-CHH	.	.	.	.	.
Chr3	8721889	8721949	AT3TE36550	.	-	ATREP4	Helitron	RC	60	tiny	832	high	4867808	chromoarm	2323	no-CHH	no-CHH	.	.	.	.	.
Chr3	8741949	8742041	AT3TE36640	.	-	ATREP5	Helitron	RC	92	tiny	624	high	4847716	chromoarm	802	no-CHH	no-CHH	.	.	.	.	.
Chr3	8742041	8742827	AT3TE36645	.	-	HELITRONY1D	Helitron	RC	786	short	756	high	4846930	chromoarm	491	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	8742827	8742933	AT3TE36650	.	-	ATREP10B	Helitron	RC	106	short	491	high	4846824	chromoarm	385	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	8752190	8752349	AT3TE36690	.	+	TAG2	HAT	DNA	159	short	86	medium	4837408	chromoarm	1024	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	8752365	8752789	AT3TE36695	.	-	SIMPLEGUY1	Harbinger	DNA	424	short	116	medium	4836968	chromoarm	922	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	8752810	8752969	AT3TE36700	.	+	TAG2	HAT	DNA	159	short	86	medium	4836788	chromoarm	742	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	8756251	8756320	AT3TE36710	.	-	ATREP7	Helitron	RC	69	tiny	164	medium	4833437	chromoarm	624	no-CHH	no-CHH	.	.	.	.	.
Chr3	8756320	8756961	AT3TE36715	.	+	HELITRONY3	Helitron	RC	641	short	1399	high	4832796	chromoarm	693	no-CHH	no-CHH	.	.	.	.	.
Chr3	8757542	8757820	AT3TE36720	.	+	ATREP3	Helitron	RC	278	short	1439	high	4831937	chromoarm	1892	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	8757820	8757848	AT3TE36725	.	+	ATREP3	Helitron	RC	28	tiny	1439	high	4831909	chromoarm	1864	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	8760610	8761275	AT3TE36735	.	-	ATREP4	Helitron	RC	665	short	832	high	4828482	chromoarm	163	no-CHH	no-CHH	.	.	.	.	.
Chr3	8766216	8766358	AT3TE36750	.	-	ATENSPM2	En-Spm	DNA	142	short	114	medium	4823399	chromoarm	2589	no-CHH	no-CHH	.	.	.	.	.
Chr3	8769907	8770020	AT3TE36760	.	-	ATLINEIII	L1	LINE	113	short	196	medium	4819737	chromoarm	735	no-CHH	no-CHH	.	.	.	.	.
Chr3	8771841	8771975	AT3TE36765	.	+	HELITRONY1C	Helitron	RC	134	short	120	medium	4817782	chromoarm	2661	no-CHH	no-CHH	.	.	.	.	.
Chr3	8771975	8772852	AT3TE36770	.	+	ATREP14	Helitron	RC	877	short	47	low	4816905	chromoarm	1784	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	8772852	8772885	AT3TE36775	.	+	ATREP14	Helitron	RC	33	tiny	47	low	4816872	chromoarm	1751	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	8772885	8772920	AT3TE36780	.	+	ATREP4	Helitron	RC	35	tiny	832	high	4816837	chromoarm	1716	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	8772920	8773535	AT3TE36785	.	+	ATREP9	Helitron	RC	615	short	201	high	4816222	chromoarm	1101	no-CHH	no-CHH	.	.	.	.	.
Chr3	8780518	8780729	AT3TE36810	.	+	ATENSPM5	En-Spm	DNA	211	short	111	medium	4809028	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	8784672	8784702	AT3TE36820	.	-	HELITRONY2	Helitron	RC	30	tiny	198	medium	4805055	chromoarm	522	no-CHH	no-CHH	.	.	.	.	.
Chr3	8784702	8785910	AT3TE36825	.	+	ATREP4	Helitron	RC	1208	short	832	high	4803847	chromoarm	552	no-CHH	no-CHH	.	.	.	.	.
Chr3	8786956	8787162	AT3TE36830	.	-	ATCOPIA4	Copia	LTR	206	short	11	low	4802595	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	8789307	8791042	AT3TE36835	.	+	ATLINE2	L1	LINE	1735	short	138	medium	4798715	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	8797035	8797171	AT3TE36860	.	+	HELITRONY1D	Helitron	RC	136	short	756	high	4792586	chromoarm	4	no-RdDM	no-CHH	.	.	.	.	.
Chr3	8797171	8797902	AT3TE36865	.	-	ATREP6	Helitron	RC	731	short	181	medium	4791855	chromoarm	140	no-CHH	no-CHH	.	.	.	.	.
Chr3	8815771	8816305	AT3TE36940	.	+	BRODYAGA1A	MuDR	DNA	534	short	586	high	4773452	chromoarm	3441	no-CHH	no-CHH	.	.	.	.	.
Chr3	8820081	8820304	AT3TE36950	.	+	ATMUNX1	MuDR	DNA	223	short	155	medium	4769453	chromoarm	294	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	8836289	8837288	AT3TE37020	.	-	BRODYAGA1	MuDR	DNA	999	short	251	high	4752469	chromoarm	444	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	8836965	8837177	AT3TE37025	.	+	BRODYAGA1A	MuDR	DNA	213	short	586	high	4752580	chromoarm	555	.	.	.	.	.	.	.
Chr3	8837177	8837200	AT3TE37030	.	+	BRODYAGA1A	MuDR	DNA	23	tiny	586	high	4752557	chromoarm	532	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	8837288	8837478	AT3TE37035	.	-	BRODYAGA1A	MuDR	DNA	190	short	586	high	4752279	chromoarm	254	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	8837478	8837526	AT3TE37040	.	-	BRODYAGA1	MuDR	DNA	48	tiny	251	high	4752231	chromoarm	206	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	8842970	8857757	AT3TE37060	.	+	VANDAL2	MuDR	DNA	14787	long	43	low	4732000	chromoarm	171	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	8852773	8853562	+	transcript_id-"b11771d3-8614-4e90-b4cc-b7d3b347368b|3"
Chr3	8857757	8858230	AT3TE37065	.	+	VANDAL2	MuDR	DNA	473	short	43	low	4731527	chromoarm	4880	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	8861316	8861802	AT3TE37075	.	-	ATHILA6A	Gypsy	LTR	486	short	247	high	4727955	chromoarm	1308	no-CHH	no-CHH	.	.	.	.	.
Chr3	8862833	8863086	AT3TE37080	.	-	META1	Copia	LTR	253	short	138	medium	4726671	chromoarm	24	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	8865279	8865372	AT3TE37085	.	+	ATLINE1_3A	L1	LINE	93	tiny	160	medium	4724385	chromoarm	396	no-CHH	no-CHH	.	.	.	.	.
Chr3	8872328	8873544	AT3TE37110	.	-	ATHILA4D_LTR	Gypsy	LTR	1216	short	106	medium	4716213	chromoarm	174	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	8873544	8873571	AT3TE37115	.	-	ATHILA4	Gypsy	LTR	27	tiny	250	high	4716186	chromoarm	1390	no-CHH	no-CHH	.	.	.	.	.
Chr3	8874888	8875097	AT3TE37120	.	+	ATREP8	Helitron	RC	209	short	75	medium	4714660	chromoarm	1109	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	8883276	8883339	AT3TE37150	.	+	ATREP7	Helitron	RC	64	tiny	164	medium	4706418	chromoarm	1664	.	.	.	.	.	.	.
Chr3	8883339	8884016	AT3TE37155	.	+	HELITRONY3A	Helitron	RC	677	short	49	low	4705741	chromoarm	1728	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	8884016	8884037	AT3TE37160	.	+	HELITRONY1D	Helitron	RC	21	tiny	756	high	4705720	chromoarm	2122	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	8893054	8893859	AT3TE37200	.	-	ATREP11	Helitron	RC	805	short	841	high	4695898	chromoarm	1017	no-CHH	no-CHH	.	.	.	.	.
Chr3	8898285	8898433	AT3TE37210	.	+	ATCOPIA66	Copia	LTR	148	short	20	low	4691324	chromoarm	2720	no-CHH	no-CHH	.	.	.	.	.
Chr3	8909090	8909761	AT3TE37260	.	-	ATREP4	Helitron	RC	671	short	832	high	4679996	chromoarm	1260	no-CHH	no-CHH	.	.	.	.	.
Chr3	8923390	8923735	AT3TE37320	.	-	ATREP5	Helitron	RC	345	short	624	high	4666022	chromoarm	361	no-CHH	no-CHH	.	.	.	.	.
Chr3	8923830	8923985	AT3TE37325	.	-	ATTIRTA1	Tc1	DNA	155	short	95	medium	4665772	chromoarm	801	no-CHH	no-CHH	.	.	.	.	.
Chr3	8924003	8924143	AT3TE37330	.	+	ATDNA12T3_2	.	DNA	140	short	660	high	4665614	chromoarm	974	no-CHH	no-CHH	.	.	.	.	.
Chr3	8924148	8924373	AT3TE37335	.	+	ATDNA12T3_2	.	DNA	225	short	660	high	4665384	chromoarm	1119	no-CHH	no-CHH	.	.	.	.	.
Chr3	8924373	8924820	AT3TE37340	.	+	ATDNA12T3_2	.	DNA	447	short	660	high	4664937	chromoarm	1344	no-CHH	no-CHH	.	.	.	.	.
Chr3	8924879	8925179	AT3TE37345	.	+	BRODYAGA2	MuDR	DNA	300	short	525	high	4664578	chromoarm	1850	no-CHH	no-CHH	.	.	.	.	.
Chr3	8925179	8925575	AT3TE37350	.	-	ATREP5	Helitron	RC	396	short	624	high	4664182	chromoarm	2150	no-CHH	no-CHH	.	.	.	.	.
Chr3	8929331	8929938	AT3TE37360	.	+	ATREP3	Helitron	RC	607	short	1439	high	4659819	chromoarm	50	no-CHH	RDR6-RdDM	.	.	.	.	.
Chr3	8931268	8931871	AT3TE37365	.	-	ATREP5	Helitron	RC	603	short	624	high	4657886	chromoarm	154	no-CHH	no-CHH	.	.	.	.	.
Chr3	8933126	8933932	AT3TE37370	.	-	ATREP10D	Helitron	RC	806	short	1295	high	4655825	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	8936456	8936775	AT3TE37380	.	-	ATHAT10	HAT	DNA	319	short	35	low	4652982	chromoarm	249	no-CHH	no-CHH	.	.	.	.	.
Chr3	8943477	8943955	AT3TE37410	.	+	HELITRON2	Helitron	RC	478	short	194	medium	4645802	chromoarm	946	no-CHH	no-CHH	.	.	.	.	.
Chr3	8948085	8948714	AT3TE37420	.	+	ATREP4	Helitron	RC	629	short	832	high	4641043	chromoarm	299	no-CHH	no-CHH	.	.	.	.	.
Chr3	8948714	8948751	AT3TE37425	.	+	BRODYAGA2	MuDR	DNA	37	tiny	525	high	4641006	chromoarm	928	no-CHH	no-CHH	.	.	.	.	.
Chr3	8949789	8950576	AT3TE37430	.	+	HELITRONY1B	Helitron	RC	787	short	414	high	4639181	chromoarm	1429	no-CHH	no-CHH	.	.	.	.	.
Chr3	8960409	8960618	AT3TE37470	.	+	ATMU1	MuDR	DNA	209	short	59	medium	4629139	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	8980028	8980343	AT3TE37550	.	+	ATTIRX1C	.	DNA	315	short	39	low	4609414	chromoarm	351	no-CHH	no-CHH	.	.	.	.	.
Chr3	8985722	8985912	AT3TE37570	.	+	RathE1_cons	.	RathE1_cons	190	short	213	high	4603845	chromoarm	2485	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	8994108	8994162	AT3TE37610	.	-	HELITRONY3	Helitron	RC	54	tiny	1399	high	4595595	chromoarm	1347	no-CHH	no-CHH	.	.	.	.	.
Chr3	8994162	8995836	AT3TE37615	.	-	ATREP4	Helitron	RC	1674	short	832	high	4593921	chromoarm	1401	no-CHH	no-CHH	.	.	.	.	.
Chr3	8995836	8995937	AT3TE37620	.	-	HELITRONY3	Helitron	RC	101	short	1399	high	4593820	chromoarm	1973	no-CHH	no-CHH	.	.	.	.	.
Chr3	9011212	9017190	AT3TE37690	.	-	TA11	L1	LINE	5978	long	157	medium	4572567	chromoarm	2411	no-RdDM	no-RdDM	ExpressedAndAnnotated	9011541	9011212	-	transcript_id-"98b2ac8b-0c29-4c1f-9917-735964160f9f|8"
Chr3	9018803	9019176	AT3TE37695	.	+	HELITRONY3	Helitron	RC	373	short	1399	high	4570581	chromoarm	1561	no-CHH	no-CHH	.	.	.	.	.
Chr3	9019523	9019588	AT3TE37700	.	-	ATHPOGON3	Pogo	DNA	65	tiny	118	medium	4570169	chromoarm	1149	no-CHH	no-CHH	.	.	.	.	.
Chr3	9019588	9020614	AT3TE37705	.	+	ATREP3	Helitron	RC	1026	short	1439	high	4569143	chromoarm	123	no-CHH	no-CHH	.	.	.	.	.
Chr3	9034437	9034612	AT3TE37760	.	-	ATREP15	Helitron	RC	175	short	1003	high	4555145	chromoarm	976	no-CHH	no-CHH	.	.	.	.	.
Chr3	9039184	9039204	AT3TE37770	.	+	ATREP15	Helitron	RC	20	tiny	1003	high	4550553	chromoarm	903	PolIV-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	9039204	9040014	AT3TE37775	.	+	ATREP1	Helitron	RC	810	short	498	high	4549743	chromoarm	93	no-CHH	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	9040173	9040459	AT3TE37780	.	+	ATENSPM1A	En-Spm	DNA	286	short	77	medium	4549298	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	9048677	9048816	AT3TE37820	.	-	ATREP1	Helitron	RC	139	short	498	high	4540941	chromoarm	629	no-CHH	no-CHH	.	.	.	.	.
Chr3	9048816	9049313	AT3TE37825	.	+	BRODYAGA1	MuDR	DNA	497	short	251	high	4540444	chromoarm	132	no-CHH	no-CHH	.	.	.	.	.
Chr3	9055107	9055334	AT3TE37840	.	+	ATHATN4	HAT	DNA	227	short	56	medium	4534423	chromoarm	318	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	9057847	9058512	AT3TE37850	.	+	ATREP4	Helitron	RC	665	short	832	high	4531245	chromoarm	52	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	9059439	9060226	AT3TE37855	.	-	HELITRONY1B	Helitron	RC	787	short	414	high	4529531	chromoarm	763	no-CHH	no-CHH	.	.	.	.	.
Chr3	9060226	9060915	AT3TE37860	.	-	ATREP1	Helitron	RC	689	short	498	high	4528842	chromoarm	74	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	9085541	9085579	AT3TE37970	.	-	ATHATN2	HAT	DNA	38	tiny	46	low	4504178	chromoarm	877	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	9085579	9085776	AT3TE37975	.	-	ATHATN3	HAT	DNA	197	short	70	medium	4503981	chromoarm	680	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	9096867	9097149	AT3TE38020	.	+	ATREP11	Helitron	RC	282	short	841	high	4492608	chromoarm	1029	no-CHH	no-CHH	.	.	.	.	.
Chr3	9097149	9097287	AT3TE38025	.	-	ATREP15	Helitron	RC	138	short	1003	high	4492470	chromoarm	891	no-CHH	no-CHH	.	.	.	.	.
Chr3	9102520	9103044	AT3TE38040	.	+	HELITRONY1D	Helitron	RC	524	short	756	high	4486713	chromoarm	683	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	9119792	9119952	AT3TE38110	.	-	ATREP3	Helitron	RC	160	short	1439	high	4469805	chromoarm	252	no-CHH	no-CHH	.	.	.	.	.
Chr3	9119952	9120839	AT3TE38115	.	+	ATREP10A	Helitron	RC	887	short	279	high	4468918	chromoarm	412	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	9120839	9121001	AT3TE38120	.	-	ATREP11	Helitron	RC	162	short	841	high	4468756	chromoarm	1299	no-CHH	no-CHH	.	.	.	.	.
Chr3	9134281	9134753	AT3TE38180	.	-	TAG3N1	HAT	DNA	472	short	97	medium	4455004	chromoarm	534	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	9162272	9163002	AT3TE38300	.	-	ATREP4	Helitron	RC	730	short	832	high	4426755	chromoarm	249	no-CHH	no-CHH	.	.	.	.	.
Chr3	9165320	9165572	AT3TE38305	.	+	ATHILA7	Gypsy	LTR	252	short	134	medium	4424185	chromoarm	402	no-CHH	no-CHH	.	.	.	.	.
Chr3	9173117	9173481	AT3TE38325	.	+	ATREP5	Helitron	RC	364	short	624	high	4416276	chromoarm	1023	no-CHH	no-CHH	.	.	.	.	.
Chr3	9179324	9179751	AT3TE38340	.	-	ATREP11	Helitron	RC	427	short	841	high	4410006	chromoarm	596	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	9179856	9180285	AT3TE38345	.	+	ATREP1	Helitron	RC	429	short	498	high	4409472	chromoarm	62	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	9186526	9186567	AT3TE38370	.	-	ATREP14	Helitron	RC	41	tiny	47	low	4403190	chromoarm	1689	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	9186567	9187013	AT3TE38375	.	-	ATREP14	Helitron	RC	446	short	47	low	4402744	chromoarm	1243	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	9187013	9187101	AT3TE38380	.	-	ATREP11	Helitron	RC	88	tiny	841	high	4402656	chromoarm	1155	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr3	9187444	9187513	AT3TE38385	.	+	BRODYAGA1	MuDR	DNA	69	tiny	251	high	4402244	chromoarm	743	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	9187513	9188014	AT3TE38390	.	-	BRODYAGA2	MuDR	DNA	501	short	525	high	4401743	chromoarm	242	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr3	9194649	9195077	AT3TE38420	.	-	HELITRONY1D	Helitron	RC	428	short	756	high	4394680	chromoarm	488	no-CHH	no-CHH	.	.	.	.	.
Chr3	9205268	9205976	AT3TE38460	.	-	ATREP15	Helitron	RC	708	short	1003	high	4383781	chromoarm	206	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	9205976	9206343	AT3TE38465	.	-	ATREP4	Helitron	RC	367	short	832	high	4383414	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	9216927	9216961	AT3TE38510	.	-	ATREP10A	Helitron	RC	34	tiny	279	high	4372796	chromoarm	596	no-CHH	no-CHH	.	.	.	.	.
Chr3	9216961	9217160	AT3TE38515	.	-	HELITRONY1D	Helitron	RC	199	short	756	high	4372597	chromoarm	630	no-CHH	no-CHH	.	.	.	.	.
Chr3	9217160	9217808	AT3TE38520	.	+	BRODYAGA2	MuDR	DNA	648	short	525	high	4371949	chromoarm	23	no-CHH	no-CHH	.	.	.	.	.
Chr3	9226540	9226632	AT3TE38560	.	+	ATCOPIA65A	Copia	LTR	92	tiny	9	low	4363125	chromoarm	1035	no-RdDM	no-CHH	.	.	.	.	.
Chr3	9226632	9231377	AT3TE38565	.	+	ATCOPIA65	Copia	LTR	4745	medium	34	low	4358380	chromoarm	203	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	9231377	9231407	AT3TE38570	.	+	ATCOPIA65	Copia	LTR	30	tiny	34	low	4358350	chromoarm	173	no-RdDM	no-CHH	.	.	.	.	.
Chr3	9231407	9231453	AT3TE38575	.	+	ATCOPIA45	Copia	LTR	46	tiny	20	low	4358304	chromoarm	127	no-RdDM	no-CHH	.	.	.	.	.
Chr3	9236679	9236764	AT3TE38590	.	-	ATLINE1_3A	L1	LINE	85	tiny	160	medium	4352993	chromoarm	81	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	9236766	9240922	AT3TE38595	.	-	ATLINEIII	L1	LINE	4156	medium	196	medium	4348835	chromoarm	168	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	9256087	9256352	AT3TE38650	.	-	ATREP9	Helitron	RC	265	short	201	high	4333405	chromoarm	1261	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	9256352	9256633	AT3TE38655	.	+	ATREP7	Helitron	RC	281	short	164	medium	4333124	chromoarm	1526	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	9256633	9258148	AT3TE38660	.	+	ATREP7	Helitron	RC	1515	short	164	medium	4331609	chromoarm	1807	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	9258148	9258540	AT3TE38665	.	+	ATREP10D	Helitron	RC	392	short	1295	high	4331217	chromoarm	2297	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	9259434	9259582	AT3TE38670	.	+	ATHAT1	HAT	DNA	148	short	105	medium	4330175	chromoarm	1255	no-CHH	no-CHH	.	.	.	.	.
Chr3	9290694	9291500	AT3TE38800	.	+	ATREP11	Helitron	RC	806	short	841	high	4298257	chromoarm	185	no-CHH	no-CHH	.	.	.	.	.
Chr3	9298738	9299099	AT3TE38830	.	-	ATDNA2T9C	MuDR	DNA	361	short	242	high	4290658	chromoarm	467	no-CHH	no-CHH	.	.	.	.	.
Chr3	9300281	9300471	AT3TE38835	.	+	HELITRONY3A	Helitron	RC	190	short	49	low	4289286	chromoarm	1799	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	9321792	9322767	AT3TE38920	.	+	HELITRONY3	Helitron	RC	975	short	1399	high	4266990	chromoarm	2287	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	9322787	9323134	AT3TE38925	.	+	ATCOPIA68	Copia	LTR	347	short	43	low	4266623	chromoarm	3282	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr3	9324371	9324434	AT3TE38930	.	-	ATREP15	Helitron	RC	63	tiny	1003	high	4265323	chromoarm	4866	no-CHH	no-CHH	.	.	.	.	.
Chr3	9324434	9324554	AT3TE38935	.	-	HELITRONY1E	Helitron	RC	120	short	447	high	4265203	chromoarm	4929	no-CHH	no-CHH	.	.	.	.	.
Chr3	9324554	9325305	AT3TE38940	.	+	HELITRONY1D	Helitron	RC	751	short	756	high	4264452	chromoarm	5049	no-CHH	no-CHH	.	.	.	.	.
Chr3	9325305	9325524	AT3TE38945	.	+	ATREP4	Helitron	RC	219	short	832	high	4264233	chromoarm	5800	no-CHH	no-CHH	.	.	.	.	.
Chr3	9325524	9325588	AT3TE38950	.	-	HELITRONY1A	Helitron	RC	64	tiny	271	high	4264169	chromoarm	6019	no-CHH	no-CHH	.	.	.	.	.
Chr3	9325948	9326437	AT3TE38955	.	-	ARNOLDY2	MuDR	DNA	489	short	288	high	4263320	chromoarm	6443	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	9327693	9328269	AT3TE38960	.	+	ATCOPIA42	Copia	LTR	576	short	35	low	4261488	chromoarm	5505	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	9331275	9331525	AT3TE38970	.	-	ATTIRTA1	Tc1	DNA	250	short	95	medium	4258232	chromoarm	2249	no-CHH	DCL3-RdDM	.	.	.	.	.
Chr3	9331559	9331662	AT3TE38975	.	+	ATHPOGON1	Pogo	DNA	103	short	174	medium	4258095	chromoarm	2112	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	9331662	9332047	AT3TE38980	.	-	ATHILA5	Gypsy	LTR	385	short	131	medium	4257710	chromoarm	1727	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	9332047	9332235	AT3TE38985	.	+	ATHPOGON1	Pogo	DNA	188	short	174	medium	4257522	chromoarm	1539	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	9335254	9335440	AT3TE38995	.	+	RathE1_cons	.	RathE1_cons	187	short	213	high	4254317	chromoarm	435	.	.	.	.	.	.	.
Chr3	9346479	9346614	AT3TE39040	.	-	HELITRONY3A	Helitron	RC	136	short	49	low	4243143	chromoarm	177	.	.	.	.	.	.	.
Chr3	9348345	9348502	AT3TE39045	.	-	ATREP11A	Helitron	RC	157	short	95	medium	4241255	chromoarm	1190	no-CHH	no-CHH	.	.	.	.	.
Chr3	9348502	9349197	AT3TE39050	.	-	ATREP10D	Helitron	RC	695	short	1295	high	4240560	chromoarm	495	no-CHH	no-CHH	.	.	.	.	.
Chr3	9349197	9349476	AT3TE39055	.	+	ATDNA2T9C	MuDR	DNA	279	short	242	high	4240281	chromoarm	216	no-CHH	no-CHH	.	.	.	.	.
Chr3	9349476	9349497	AT3TE39060	.	+	ATREP3	Helitron	RC	21	tiny	1439	high	4240260	chromoarm	195	no-CHH	no-CHH	.	.	.	.	.
Chr3	9360480	9361767	AT3TE39110	.	+	HELITRONY3	Helitron	RC	1287	short	1399	high	4227990	chromoarm	185	no-CHH	no-CHH	.	.	.	.	.
Chr3	9361784	9361919	AT3TE39115	.	+	ATREP7	Helitron	RC	135	short	164	medium	4227838	chromoarm	1489	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	9362354	9363016	AT3TE39120	.	+	ATREP15	Helitron	RC	662	short	1003	high	4226741	chromoarm	2059	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	9363016	9363553	AT3TE39125	.	+	ATREP11A	Helitron	RC	537	short	95	medium	4226204	chromoarm	2721	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	9366241	9367091	AT3TE39135	.	+	ATREP10D	Helitron	RC	850	short	1295	high	4222666	chromoarm	2506	no-CHH	no-CHH	.	.	.	.	.
Chr3	9370119	9370531	AT3TE39145	.	-	HELITRON4	Helitron	RC	412	short	199	medium	4219226	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	9376335	9376479	AT3TE39160	.	+	ATCOPIA5	Copia	LTR	144	short	16	low	4213278	chromoarm	741	no-CHH	no-CHH	.	.	.	.	.
Chr3	9376540	9377178	AT3TE39165	.	-	HELITRONY3	Helitron	RC	638	short	1399	high	4212579	chromoarm	946	no-CHH	no-CHH	.	.	.	.	.
Chr3	9383213	9383706	AT3TE39190	.	-	ATREP11	Helitron	RC	493	short	841	high	4206051	chromoarm	1808	no-CHH	no-CHH	.	.	.	.	.
Chr3	9383718	9383766	AT3TE39195	.	-	ATREP3	Helitron	RC	48	tiny	1439	high	4205991	chromoarm	2313	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	9383766	9383797	AT3TE39200	.	-	ATREP3	Helitron	RC	31	tiny	1439	high	4205960	chromoarm	2361	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	9383797	9386424	AT3TE39205	.	-	ATREP3	Helitron	RC	2627	medium	1439	high	4203333	chromoarm	2392	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	9386428	9386981	AT3TE39210	.	+	HELITRONY1A	Helitron	RC	553	short	271	high	4202776	chromoarm	5023	no-CHH	no-CHH	.	.	.	.	.
Chr3	9386981	9387037	AT3TE39215	.	-	ATREP5	Helitron	RC	56	tiny	624	high	4202720	chromoarm	5576	no-CHH	no-CHH	.	.	.	.	.
Chr3	9387866	9393251	AT3TE39220	.	+	ATCOPIA17	Copia	LTR	5385	long	16	low	4196506	chromoarm	259	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	9393251	9393281	AT3TE39225	.	+	ATCOPIA24	Copia	LTR	30	tiny	27	low	4196476	chromoarm	229	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	9394251	9394480	AT3TE39230	.	-	ATREP3	Helitron	RC	229	short	1439	high	4195277	chromoarm	0	no-CHH	RDR6-RdDM	.	.	.	.	.
Chr3	9394480	9394588	AT3TE39235	.	-	HELITRONY1D	Helitron	RC	108	short	756	high	4195169	chromoarm	146	no-CHH	no-CHH	.	.	.	.	.
Chr3	9394588	9395576	AT3TE39240	.	+	ATREP10B	Helitron	RC	988	short	491	high	4194181	chromoarm	254	no-CHH	no-CHH	.	.	.	.	.
Chr3	9395576	9395783	AT3TE39245	.	+	HELITRONY3	Helitron	RC	207	short	1399	high	4193974	chromoarm	721	no-CHH	no-CHH	.	.	.	.	.
Chr3	9395840	9396223	AT3TE39250	.	+	BRODYAGA1A	MuDR	DNA	383	short	586	high	4193534	chromoarm	281	no-CHH	no-CHH	.	.	.	.	.
Chr3	9398698	9398786	AT3TE39260	.	-	ATDNA12T3_2	.	DNA	88	tiny	660	high	4190971	chromoarm	0	no-CHH	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	9400145	9400191	AT3TE39265	.	+	ATHATN5	HAT	DNA	46	tiny	42	low	4189566	chromoarm	492	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	9402082	9403113	AT3TE39270	.	+	ATREP4	Helitron	RC	1031	short	832	high	4186644	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	9406025	9406190	AT3TE39280	.	-	RathE3_cons	.	RathE3_cons	165	short	104	medium	4183567	chromoarm	784	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	9428478	9429162	AT3TE39380	.	-	ATREP9	Helitron	RC	684	short	201	high	4160595	chromoarm	309	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	9432629	9433115	AT3TE39390	.	-	ATREP3	Helitron	RC	486	short	1439	high	4156642	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	9434861	9438342	AT3TE39395	.	-	ATLINE2	L1	LINE	3481	medium	138	medium	4151415	chromoarm	939	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	9438343	9438404	AT3TE39400	.	-	ATLINE2	L1	LINE	62	tiny	138	medium	4151353	chromoarm	877	.	.	.	.	.	.	.
Chr3	9444590	9446673	AT3TE39430	.	-	ATLINEIII	L1	LINE	2083	medium	196	medium	4143084	chromoarm	871	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	9456002	9456374	AT3TE39470	.	+	VANDAL17	MuDR	DNA	372	short	178	medium	4133383	chromoarm	0	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	9468391	9469105	AT3TE39520	.	+	HELITRONY1B	Helitron	RC	714	short	414	high	4120652	chromoarm	607	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	9469105	9469142	AT3TE39525	.	+	BRODYAGA1A	MuDR	DNA	37	tiny	586	high	4120615	chromoarm	570	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	9469142	9469194	AT3TE39530	.	+	HELITRONY3	Helitron	RC	52	tiny	1399	high	4120563	chromoarm	518	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	9471172	9471246	AT3TE39535	.	-	ATN9_1	MuDR	DNA	74	tiny	65	medium	4118511	chromoarm	283	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	9471262	9471427	AT3TE39540	.	+	ATENSPM5	En-Spm	DNA	165	short	111	medium	4118330	chromoarm	373	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	9471427	9472162	AT3TE39545	.	-	ATN9_1	MuDR	DNA	735	short	65	medium	4117595	chromoarm	538	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	9474662	9474933	AT3TE39555	.	+	BRODYAGA1	MuDR	DNA	272	short	251	high	4114824	chromoarm	1118	.	.	.	.	.	.	.
Chr3	9478758	9479632	AT3TE39565	.	-	ATREP15	Helitron	RC	874	short	1003	high	4110125	chromoarm	1331	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	9483082	9484177	AT3TE39575	.	-	HELITRONY3	Helitron	RC	1095	short	1399	high	4105580	chromoarm	398	no-CHH	no-CHH	.	.	.	.	.
Chr3	9484177	9484316	AT3TE39580	.	+	ATREP11	Helitron	RC	139	short	841	high	4105441	chromoarm	1493	no-CHH	no-CHH	.	.	.	.	.
Chr3	9488060	9488115	AT3TE39590	.	-	ATREP1	Helitron	RC	55	tiny	498	high	4101642	chromoarm	1437	no-CHH	no-CHH	.	.	.	.	.
Chr3	9488115	9489244	AT3TE39595	.	-	ATREP10D	Helitron	RC	1129	short	1295	high	4100513	chromoarm	591	no-CHH	no-CHH	.	.	.	.	.
Chr3	9509265	9509441	AT3TE39680	.	-	ATREP3	Helitron	RC	176	short	1439	high	4080316	chromoarm	723	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	9509441	9511037	AT3TE39685	.	+	ATREP15	Helitron	RC	1596	short	1003	high	4078720	chromoarm	863	no-CHH	no-CHH	.	.	.	.	.
Chr3	9511037	9511334	AT3TE39690	.	+	ATREP10D	Helitron	RC	297	short	1295	high	4078423	chromoarm	566	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	9517232	9517374	AT3TE39720	.	-	LIMPET1	MuDR	DNA	142	short	116	medium	4072383	chromoarm	366	no-CHH	no-CHH	.	.	.	.	.
Chr3	9521151	9521222	AT3TE39730	.	-	VANDAL8	MuDR	DNA	71	tiny	123	medium	4068535	chromoarm	82	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr3	9521222	9521736	AT3TE39735	.	-	ATREP11	Helitron	RC	514	short	841	high	4068021	chromoarm	153	no-CHH	no-CHH	.	.	.	.	.
Chr3	9521736	9521764	AT3TE39740	.	+	ATREP9	Helitron	RC	28	tiny	201	high	4067993	chromoarm	142	no-CHH	RDR6-RdDM	.	.	.	.	.
Chr3	9535795	9536823	AT3TE39800	.	+	ATREP10D	Helitron	RC	1028	short	1295	high	4052934	chromoarm	385	no-CHH	no-CHH	.	.	.	.	.
Chr3	9540269	9540291	AT3TE39810	.	+	ATREP4	Helitron	RC	22	tiny	832	high	4049466	chromoarm	120	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	9540291	9540332	AT3TE39815	.	-	HELITRONY3	Helitron	RC	41	tiny	1399	high	4049425	chromoarm	142	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	9540332	9541250	AT3TE39820	.	+	ATREP11	Helitron	RC	918	short	841	high	4048507	chromoarm	183	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	9541250	9541574	AT3TE39825	.	+	ATREP5	Helitron	RC	324	short	624	high	4048183	chromoarm	0	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	9547904	9548259	AT3TE39850	.	-	ATREP11	Helitron	RC	355	short	841	high	4041498	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	9557990	9559675	AT3TE39890	.	-	ATREP3	Helitron	RC	1685	short	1439	high	4030082	chromoarm	66	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	9559676	9559752	AT3TE39895	.	-	ATREP3	Helitron	RC	77	tiny	1439	high	4030005	chromoarm	0	.	.	.	.	.	.	.
Chr3	9563149	9563285	AT3TE39905	.	+	ARNOLDY2	MuDR	DNA	136	short	288	high	4026472	chromoarm	79	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	9563286	9563852	AT3TE39910	.	+	ATTIRX1A	.	DNA	566	short	63	medium	4025905	chromoarm	216	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	9563856	9564036	AT3TE39915	.	+	ATTIRX1A	.	DNA	181	short	63	medium	4025721	chromoarm	785	.	.	.	.	.	.	.
Chr3	9572295	9572559	AT3TE39950	.	+	HELITRON2	Helitron	RC	264	short	194	medium	4017198	chromoarm	982	no-CHH	no-CHH	.	.	.	.	.
Chr3	9572559	9572579	AT3TE39955	.	+	HELITRONY1E	Helitron	RC	20	tiny	447	high	4017178	chromoarm	962	no-CHH	no-CHH	.	.	.	.	.
Chr3	9572579	9573272	AT3TE39960	.	-	HELITRONY1D	Helitron	RC	693	short	756	high	4016485	chromoarm	269	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	9575236	9575819	AT3TE39965	.	+	ATREP19	.	DNA	583	short	189	medium	4013938	chromoarm	107	no-CHH	no-CHH	.	.	.	.	.
Chr3	9575819	9575888	AT3TE39970	.	+	ATREP3	Helitron	RC	69	tiny	1439	high	4013869	chromoarm	690	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	9575899	9576191	AT3TE39975	.	+	ATLINE1_1	L1	LINE	292	short	61	medium	4013566	chromoarm	770	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	9576219	9577646	AT3TE39980	.	+	ATREP11	Helitron	RC	1427	short	841	high	4012111	chromoarm	760	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	9577646	9578108	AT3TE39985	.	+	ATREP10D	Helitron	RC	462	short	1295	high	4011649	chromoarm	298	no-CHH	no-CHH	.	.	.	.	.
Chr3	9580012	9580095	AT3TE39990	.	+	BRODYAGA2	MuDR	DNA	83	tiny	525	high	4009662	chromoarm	19	no-CHH	no-CHH	.	.	.	.	.
Chr3	9580095	9580608	AT3TE39995	.	-	HELITRONY1D	Helitron	RC	513	short	756	high	4009149	chromoarm	102	no-CHH	no-CHH	.	.	.	.	.
Chr3	9580608	9581584	AT3TE40000	.	-	ATREP11	Helitron	RC	976	short	841	high	4008173	chromoarm	615	no-CHH	no-CHH	.	.	.	.	.
Chr3	9580961	9581437	AT3TE40005	.	+	ATDNA2T9A	MuDR	DNA	476	short	48	low	4008320	chromoarm	968	no-CHH	no-CHH	.	.	.	.	.
Chr3	9582616	9582843	AT3TE40010	.	+	ATTIRX1B	.	DNA	227	short	44	low	4006914	chromoarm	631	no-CHH	no-CHH	.	.	.	.	.
Chr3	9608026	9608085	AT3TE40120	.	-	ATDNAI27T9A	MuDR	DNA	60	tiny	116	medium	3981672	chromoarm	922	.	.	.	.	.	.	.
Chr3	9608085	9610451	AT3TE40125	.	-	ATDNAI27T9A	MuDR	DNA	2366	medium	116	medium	3979306	chromoarm	982	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	9610238	9609254	-	transcript_id-"ca622e33-8eb0-42d8-b683-09101d5f6d86|7"
Chr3	9609341	9609449	AT3TE40130	.	-	VANDAL5A	MuDR	DNA	109	short	56	medium	3980308	chromoarm	2237	.	.	LowExpressed	.	.	.	.
Chr3	9609531	9609728	AT3TE40135	.	-	LIMPET1	MuDR	DNA	198	short	116	medium	3980029	chromoarm	1967	.	.	LowExpressed	.	.	.	.
Chr3	9613220	9625546	AT3TE40145	.	-	VANDAL13	MuDR	DNA	12326	long	38	low	3964211	chromoarm	52	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	9614590,9618485,9619724	9614887,9618659,9618981	+,+,-	transcript_id-"81fcdd9a-4e78-42fa-9282-1d4a8842dcc3|4",transcript_id-"740bdc3a-d189-44dc-9aef-7515f36423de|4",transcript_id-"f4bc855c-872f-4bb2-b3f2-8a0d5714b9c1|4"
Chr3	9625933	9626538	AT3TE40150	.	+	ATREP1	Helitron	RC	605	short	498	high	3963219	chromoarm	1063	no-CHH	no-CHH	.	.	.	.	.
Chr3	9629220	9630035	AT3TE40160	.	+	ATREP10D	Helitron	RC	815	short	1295	high	3959722	chromoarm	25	no-CHH	no-CHH	.	.	.	.	.
Chr3	9630220	9630295	AT3TE40165	.	+	ATLINE1_3A	L1	LINE	75	tiny	160	medium	3959462	chromoarm	62	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	9642801	9642853	AT3TE40210	.	-	HELITRONY1B	Helitron	RC	52	tiny	414	high	3946904	chromoarm	22	no-CHH	no-CHH	.	.	.	.	.
Chr3	9642853	9642881	AT3TE40215	.	+	ATREP3	Helitron	RC	28	tiny	1439	high	3946876	chromoarm	74	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	9642881	9644379	AT3TE40220	.	+	ATREP15	Helitron	RC	1498	short	1003	high	3945378	chromoarm	3	no-CHH	no-CHH	.	.	.	.	.
Chr3	9646565	9646691	AT3TE40225	.	-	RathE2_cons	.	RathE2_cons	126	short	74	medium	3943066	chromoarm	181	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	9664084	9664188	AT3TE40290	.	+	ATTIRTA1	Tc1	DNA	104	short	95	medium	3925569	chromoarm	134	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	9664188	9665522	AT3TE40295	.	+	ATREP6	Helitron	RC	1334	short	181	medium	3924235	chromoarm	238	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	9665522	9665603	AT3TE40300	.	+	ATREP15	Helitron	RC	81	tiny	1003	high	3924154	chromoarm	1012	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	9680814	9681543	AT3TE40370	.	+	BRODYAGA2	MuDR	DNA	730	short	525	high	3908214	chromoarm	49	.	.	ExpressedAndAnnotated	9684661	9681404	-	transcript_id-"23b078d7-3335-4ce1-8b7e-7d94ef7ad282|10"
Chr3	9692213	9697529	AT3TE40420	.	-	ATCOPIA82	Copia	LTR	5316	long	7	low	3892228	chromoarm	1386	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	9697667	9697985	AT3TE40425	.	+	ATLINE1_3A	L1	LINE	318	short	160	medium	3891772	chromoarm	6156	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	9698527	9698795	AT3TE40430	.	-	ATCOPIA21	Copia	LTR	268	short	14	low	3890962	chromoarm	5346	no-CHH	no-CHH	.	.	.	.	.
Chr3	9698971	9699190	AT3TE40435	.	-	ATCOPIA6	Copia	LTR	219	short	8	low	3890567	chromoarm	4951	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	9702879	9703562	AT3TE40445	.	-	ATLINEIII	L1	LINE	683	short	196	medium	3886195	chromoarm	579	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	9707799	9707921	AT3TE40455	.	+	ATMUNX1	MuDR	DNA	122	short	155	medium	3881836	chromoarm	273	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	9714208	9715264	AT3TE40480	.	+	ATREP11	Helitron	RC	1056	short	841	high	3874493	chromoarm	1022	no-CHH	no-CHH	.	.	.	.	.
Chr3	9715819	9715907	AT3TE40485	.	+	ATREP4	Helitron	RC	88	tiny	832	high	3873850	chromoarm	2633	no-CHH	no-CHH	.	.	.	.	.
Chr3	9715907	9717277	AT3TE40490	.	-	ATREP10D	Helitron	RC	1370	short	1295	high	3872480	chromoarm	2721	no-CHH	no-CHH	.	.	.	.	.
Chr3	9717277	9717481	AT3TE40495	.	-	ATREP3	Helitron	RC	204	short	1439	high	3872276	chromoarm	4091	no-CHH	no-CHH	.	.	.	.	.
Chr3	9717481	9717945	AT3TE40500	.	+	ATREP3	Helitron	RC	464	short	1439	high	3871812	chromoarm	4295	no-CHH	no-CHH	.	.	.	.	.
Chr3	9723883	9736151	AT3TE40530	.	+	VANDAL14	MuDR	DNA	12268	long	25	low	3853606	chromoarm	180	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	9736152	9736695	AT3TE40535	.	-	HELITRONY3	Helitron	RC	544	short	1399	high	3853062	chromoarm	7033	.	.	.	.	.	.	.
Chr3	9739655	9740357	AT3TE40545	.	+	BRODYAGA2	MuDR	DNA	702	short	525	high	3849400	chromoarm	3371	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	9740641	9741415	AT3TE40550	.	+	HELITRONY2	Helitron	RC	774	short	198	medium	3848342	chromoarm	2313	no-CHH	no-CHH	.	.	.	.	.
Chr3	9742163	9742514	AT3TE40555	.	-	ATMUNX1	MuDR	DNA	351	short	155	medium	3847243	chromoarm	1214	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	9753087	9753445	AT3TE40600	.	+	VANDAL17	MuDR	DNA	358	short	178	medium	3836312	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	9760985	9761272	AT3TE40630	.	-	ATLINE1_3A	L1	LINE	287	short	160	medium	3828485	chromoarm	636	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	9766146	9766254	AT3TE40650	.	-	ATREP4	Helitron	RC	108	short	832	high	3823503	chromoarm	887	no-CHH	no-CHH	.	.	.	.	.
Chr3	9766254	9767628	AT3TE40655	.	-	ATREP3	Helitron	RC	1374	short	1439	high	3822129	chromoarm	995	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	9767628	9767689	AT3TE40660	.	+	ATREP5	Helitron	RC	61	tiny	624	high	3822068	chromoarm	2199	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	9767689	9768278	AT3TE40665	.	+	HELITRONY1D	Helitron	RC	589	short	756	high	3821479	chromoarm	1610	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	9769047	9769415	AT3TE40670	.	-	ATSINE2A	.	SINE	368	short	33	low	3820342	chromoarm	473	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	9772125	9772924	AT3TE40680	.	-	ATREP15	Helitron	RC	799	short	1003	high	3816833	chromoarm	389	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	9772946	9772980	AT3TE40685	.	+	TAG2	HAT	DNA	34	tiny	86	medium	3816777	chromoarm	1210	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	9772980	9774080	AT3TE40690	.	+	TAG2	HAT	DNA	1100	short	86	medium	3815677	chromoarm	1244	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	9774080	9774608	AT3TE40695	.	+	ATREP4	Helitron	RC	528	short	832	high	3815149	chromoarm	2344	no-CHH	no-CHH	.	.	.	.	.
Chr3	9781442	9781625	AT3TE40720	.	-	RathE1_cons	.	RathE1_cons	184	short	213	high	3808132	chromoarm	1174	.	.	.	.	.	.	.
Chr3	9783356	9783727	AT3TE40725	.	-	HELITRONY1D	Helitron	RC	371	short	756	high	3806030	chromoarm	3089	no-RdDM	no-CHH	.	.	.	.	.
Chr3	9784724	9784928	AT3TE40730	.	-	ATLINEIII	L1	LINE	204	short	196	medium	3804829	chromoarm	2645	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	9784928	9787388	AT3TE40735	.	-	ATLINE2	L1	LINE	2460	medium	138	medium	3802369	chromoarm	185	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	9788017	9788321	AT3TE40740	.	-	ATSINE4	.	SINE	304	short	98	medium	3801436	chromoarm	0	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	9801518	9801596	AT3TE40800	.	-	ATCOPIA6	Copia	LTR	78	tiny	8	low	3788161	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	9805855	9807084	AT3TE40810	.	-	HELITRONY3	Helitron	RC	1229	short	1399	high	3782673	chromoarm	457	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	9808011	9808121	AT3TE40815	.	-	ARNOLD1	MuDR	DNA	110	short	39	low	3781636	chromoarm	2547	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	9808121	9809189	AT3TE40820	.	+	BOMZH1	MuDR	DNA	1068	short	28	low	3780568	chromoarm	1479	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	9809189	9809626	AT3TE40825	.	-	ATREP3	Helitron	RC	437	short	1439	high	3780131	chromoarm	1042	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	9815221	9815319	AT3TE40840	.	+	BRODYAGA1A	MuDR	DNA	98	tiny	586	high	3774438	chromoarm	615	no-CHH	no-CHH	.	.	.	.	.
Chr3	9815319	9815640	AT3TE40845	.	-	HELITRON4	Helitron	RC	321	short	199	medium	3774117	chromoarm	713	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	9816127	9816282	AT3TE40850	.	+	ATHPOGON3	Pogo	DNA	155	short	118	medium	3773475	chromoarm	424	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	9828597	9829385	AT3TE40900	.	-	ATN9_1	MuDR	DNA	788	short	65	medium	3760372	chromoarm	136	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	9829385	9829509	AT3TE40905	.	+	HELITRONY2	Helitron	RC	124	short	198	medium	3760248	chromoarm	924	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	9829590	9829679	AT3TE40910	.	-	SIMPLEGUY1	Harbinger	DNA	89	tiny	116	medium	3760078	chromoarm	1129	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr3	9829983	9830076	AT3TE40915	.	+	ATREP9	Helitron	RC	93	tiny	201	high	3759681	chromoarm	1323	no-CHH	no-CHH	.	.	.	.	.
Chr3	9830076	9830872	AT3TE40920	.	-	HELITRONY2	Helitron	RC	796	short	198	medium	3758885	chromoarm	527	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	9830872	9830942	AT3TE40925	.	-	HELITRON2	Helitron	RC	70	tiny	194	medium	3758815	chromoarm	457	no-CHH	no-CHH	.	.	.	.	.
Chr3	9833836	9834038	AT3TE40935	.	+	VANDAL17	MuDR	DNA	202	short	178	medium	3755719	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	9839070	9839177	AT3TE40950	.	+	ATMUNX1	MuDR	DNA	107	short	155	medium	3750580	chromoarm	961	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	9839177	9839228	AT3TE40955	.	-	ATMUNX1	MuDR	DNA	51	tiny	155	medium	3750529	chromoarm	910	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	9839271	9839312	AT3TE40960	.	+	RathE3_cons	.	RathE3_cons	41	tiny	104	medium	3750445	chromoarm	826	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	9839312	9839597	AT3TE40965	.	+	ATMUNX1	MuDR	DNA	285	short	155	medium	3750160	chromoarm	541	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	9839597	9839657	AT3TE40970	.	-	ATMUNX1	MuDR	DNA	60	tiny	155	medium	3750100	chromoarm	481	no-RdDM	no-CHH	.	.	.	.	.
Chr3	9841706	9841762	AT3TE40975	.	+	ATREP15	Helitron	RC	56	tiny	1003	high	3747995	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	9841762	9842100	AT3TE40980	.	+	ATHATN1	HAT	DNA	338	short	69	medium	3747657	chromoarm	43	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	9853060	9853267	AT3TE41030	.	+	ATLINE1_5	L1	LINE	207	short	91	medium	3736490	chromoarm	378	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	9857696	9857881	AT3TE41040	.	+	ATREP10D	Helitron	RC	185	short	1295	high	3731876	chromoarm	1948	no-CHH	no-CHH	.	.	.	.	.
Chr3	9857881	9859946	AT3TE41045	.	+	ATREP3	Helitron	RC	2065	medium	1439	high	3729811	chromoarm	2133	no-CHH	no-CHH	.	.	.	.	.
Chr3	9859946	9859972	AT3TE41050	.	-	ATREP10B	Helitron	RC	26	tiny	491	high	3729785	chromoarm	2200	no-CHH	no-CHH	.	.	.	.	.
Chr3	9859972	9860013	AT3TE41055	.	+	ATREP5	Helitron	RC	41	tiny	624	high	3729744	chromoarm	2159	no-CHH	no-CHH	.	.	.	.	.
Chr3	9861433	9861702	AT3TE41060	.	-	TNAT1A	.	DNA	269	short	162	medium	3728055	chromoarm	470	no-RdDM	no-CHH	.	.	.	.	.
Chr3	9861861	9862049	AT3TE41065	.	+	RP1_AT	.	DNA	188	short	87	medium	3727708	chromoarm	123	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	9866575	9867468	AT3TE41075	.	+	HELITRONY2	Helitron	RC	893	short	198	medium	3722289	chromoarm	873	no-CHH	no-CHH	.	.	.	.	.
Chr3	9874230	9874402	AT3TE41100	.	+	ATENSPM3	En-Spm	DNA	172	short	98	medium	3715355	chromoarm	3766	no-CHH	no-CHH	.	.	.	.	.
Chr3	9886196	9886245	AT3TE41150	.	-	HELITRONY1A	Helitron	RC	49	tiny	271	high	3703512	chromoarm	1129	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	9886245	9887442	AT3TE41155	.	-	ATREP10D	Helitron	RC	1197	short	1295	high	3702315	chromoarm	547	no-CHH	no-CHH	.	.	.	.	.
Chr3	9889522	9889578	AT3TE41160	.	-	ATREP15	Helitron	RC	56	tiny	1003	high	3700179	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	9889578	9891078	AT3TE41165	.	+	ATREP3	Helitron	RC	1500	short	1439	high	3698679	chromoarm	18	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	9891078	9891494	AT3TE41170	.	+	HELITRONY1E	Helitron	RC	416	short	447	high	3698263	chromoarm	1313	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	9899485	9899560	AT3TE41200	.	+	ATHILA4D_LTR	Gypsy	LTR	75	tiny	106	medium	3690197	chromoarm	135	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	9899560	9900766	AT3TE41205	.	+	ATHILA4A	Gypsy	LTR	1206	short	310	high	3688991	chromoarm	210	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	9900777	9901141	AT3TE41210	.	-	ATLINE1_6	L1	LINE	364	short	129	medium	3688616	chromoarm	374	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	9905312	9905425	AT3TE41220	.	-	ATREP19	.	DNA	113	short	189	medium	3684332	chromoarm	908	no-CHH	no-CHH	.	.	.	.	.
Chr3	9905425	9906333	AT3TE41225	.	-	BRODYAGA1	MuDR	DNA	908	short	251	high	3683424	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	9906704	9907172	AT3TE41230	.	-	HELITRONY1D	Helitron	RC	468	short	756	high	3682585	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	9918982	9919714	AT3TE41280	.	-	HELITRONY1D	Helitron	RC	732	short	756	high	3670043	chromoarm	471	no-CHH	no-CHH	.	.	.	.	.
Chr3	9919714	9919906	AT3TE41285	.	+	BRODYAGA2	MuDR	DNA	192	short	525	high	3669851	chromoarm	1203	no-CHH	no-CHH	.	.	.	.	.
Chr3	9928740	9928804	AT3TE41320	.	-	HELITRONY1A	Helitron	RC	64	tiny	271	high	3660953	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	9943655	9944503	AT3TE41380	.	+	ATREP15	Helitron	RC	848	short	1003	high	3645254	chromoarm	244	no-CHH	no-CHH	.	.	.	.	.
Chr3	9959505	9959666	AT3TE41440	.	+	ATREP5	Helitron	RC	161	short	624	high	3630091	chromoarm	751	no-CHH	no-CHH	.	.	.	.	.
Chr3	9965911	9966031	AT3TE41470	.	-	ATREP10D	Helitron	RC	120	short	1295	high	3623726	chromoarm	1450	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	9966031	9967545	AT3TE41475	.	+	ATREP10C	Helitron	RC	1514	short	123	medium	3622212	chromoarm	1570	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	9967545	9967771	AT3TE41480	.	+	HELITRONY1B	Helitron	RC	226	short	414	high	3621986	chromoarm	1963	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	9967771	9968120	AT3TE41485	.	+	ATREP11	Helitron	RC	349	short	841	high	3621637	chromoarm	1614	no-CHH	no-CHH	.	.	.	.	.
Chr3	9972812	9972848	AT3TE41495	.	-	ATREP10D	Helitron	RC	36	tiny	1295	high	3616909	chromoarm	0	no-CHH	no-RdDM	.	.	.	.	.
Chr3	9972848	9973534	AT3TE41500	.	-	ATREP10B	Helitron	RC	686	short	491	high	3616223	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	9977271	9977336	AT3TE41510	.	+	RP1_AT	.	DNA	65	tiny	87	medium	3612421	chromoarm	0	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	9977354	9977444	AT3TE41515	.	-	RP1_AT	.	DNA	90	tiny	87	medium	3612313	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	9986941	9987075	AT3TE41550	.	-	ATN9_1	MuDR	DNA	134	short	65	medium	3602682	chromoarm	381	no-CHH	no-CHH	.	.	.	.	.
Chr3	9987075	9988701	AT3TE41555	.	+	ATREP10D	Helitron	RC	1626	short	1295	high	3601056	chromoarm	515	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	9988713	9988934	AT3TE41560	.	+	ARNOLDY1	MuDR	DNA	221	short	237	high	3600823	chromoarm	1085	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	9988934	9989375	AT3TE41565	.	+	HELITRONY3	Helitron	RC	441	short	1399	high	3600382	chromoarm	644	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	9989375	9989404	AT3TE41570	.	-	ARNOLDY2	MuDR	DNA	29	tiny	288	high	3600353	chromoarm	615	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	9996175	9996572	AT3TE41600	.	-	ATMUN1	MuDR	DNA	397	short	107	medium	3593185	chromoarm	252	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	9996572	9996624	AT3TE41605	.	-	HELITRONY1D	Helitron	RC	52	tiny	756	high	3593133	chromoarm	649	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	9996911	9997724	AT3TE41610	.	-	ATREP4	Helitron	RC	813	short	832	high	3592033	chromoarm	281	no-CHH	no-CHH	.	.	.	.	.
Chr3	10004463	10004999	AT3TE41640	.	+	ATDNAI26T9	MuDR	DNA	536	short	25	low	3584758	chromoarm	182	PolIV-RdDM	no-CHH	ExpressedAndAnnotated	10004695	10005577	+	transcript_id-"fb60d16d-3d08-40db-a2ac-e7cbf20ec3a5|3"
Chr3	10005626	10005796	AT3TE41645	.	-	ATDNAI27T9B	MuDR	DNA	170	short	43	low	3583961	chromoarm	1094	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10006153	10008498	AT3TE41650	.	-	VANDAL5A	MuDR	DNA	2345	medium	56	medium	3581259	chromoarm	0	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	10008500	10009413	AT3TE41655	.	+	ATREP5	Helitron	RC	913	short	624	high	3580344	chromoarm	278	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10011859	10012028	AT3TE41665	.	-	HELITRONY3	Helitron	RC	169	short	1399	high	3577729	chromoarm	899	no-CHH	no-CHH	.	.	.	.	.
Chr3	10012028	10013423	AT3TE41670	.	-	ATREP3	Helitron	RC	1395	short	1439	high	3576334	chromoarm	1068	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	10013423	10013770	AT3TE41675	.	-	ATREP4	Helitron	RC	347	short	832	high	3575987	chromoarm	2463	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	10013770	10014027	AT3TE41680	.	-	HELITRONY1A	Helitron	RC	257	short	271	high	3575730	chromoarm	2810	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	10014596	10014722	AT3TE41685	.	-	DT1	Mariner	DNA	126	short	123	medium	3575035	chromoarm	2808	no-CHH	no-CHH	.	.	.	.	.
Chr3	10015035	10015362	AT3TE41690	.	+	HELITRONY1D	Helitron	RC	327	short	756	high	3574395	chromoarm	2168	no-CHH	no-CHH	.	.	.	.	.
Chr3	10016364	10017320	AT3TE41695	.	-	ATREP15	Helitron	RC	956	short	1003	high	3572437	chromoarm	210	no-CHH	no-CHH	.	.	.	.	.
Chr3	10031177	10031337	AT3TE41750	.	+	TAG2	HAT	DNA	160	short	86	medium	3558420	chromoarm	1115	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	10031353	10031934	AT3TE41755	.	-	SIMPLEGUY1	Harbinger	DNA	581	short	116	medium	3557823	chromoarm	1291	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10031934	10031978	AT3TE41760	.	-	SIMPLEGUY1	Harbinger	DNA	44	tiny	116	medium	3557779	chromoarm	1872	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	10031990	10032152	AT3TE41765	.	+	TAG2	HAT	DNA	162	short	86	medium	3557605	chromoarm	1928	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	10032856	10033392	AT3TE41770	.	-	ATHATN10	HAT	DNA	536	short	48	low	3556365	chromoarm	2794	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	10038306	10038487	AT3TE41790	.	-	ATREP3	Helitron	RC	181	short	1439	high	3551270	chromoarm	1016	no-CHH	no-CHH	.	.	.	.	.
Chr3	10038487	10039038	AT3TE41795	.	-	ATREP11	Helitron	RC	551	short	841	high	3550719	chromoarm	465	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10039038	10039282	AT3TE41800	.	-	ATREP5	Helitron	RC	244	short	624	high	3550475	chromoarm	221	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10039282	10039306	AT3TE41805	.	-	ATREP3	Helitron	RC	24	tiny	1439	high	3550451	chromoarm	197	no-CHH	no-CHH	.	.	.	.	.
Chr3	10043090	10043724	AT3TE41815	.	-	HELITRON2	Helitron	RC	634	short	194	medium	3546033	chromoarm	13	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	10048661	10048838	AT3TE41830	.	+	ATREP10D	Helitron	RC	177	short	1295	high	3540919	chromoarm	1439	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	10048838	10049586	AT3TE41835	.	-	ATREP13	Helitron	RC	748	short	106	medium	3540171	chromoarm	1616	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10049586	10049664	AT3TE41840	.	+	ATREP10D	Helitron	RC	78	tiny	1295	high	3540093	chromoarm	2077	no-CHH	no-CHH	.	.	.	.	.
Chr3	10065832	10065946	AT3TE41910	.	-	HELITRONY1B	Helitron	RC	114	short	414	high	3523811	chromoarm	2464	no-CHH	no-CHH	.	.	.	.	.
Chr3	10065946	10067204	AT3TE41915	.	+	ATREP6	Helitron	RC	1258	short	181	medium	3522553	chromoarm	1206	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10075095	10075211	AT3TE41940	.	+	RathE3_cons	.	RathE3_cons	116	short	104	medium	3514546	chromoarm	1031	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	10078805	10079454	AT3TE41950	.	-	ATREP10D	Helitron	RC	649	short	1295	high	3510303	chromoarm	583	no-CHH	no-CHH	.	.	.	.	.
Chr3	10081397	10081479	AT3TE41955	.	-	ATENSPM6	En-Spm	DNA	82	tiny	151	medium	3508278	chromoarm	132	no-CHH	no-CHH	.	.	.	.	.
Chr3	10081479	10081518	AT3TE41960	.	+	ATDNA2T9C	MuDR	DNA	39	tiny	242	high	3508239	chromoarm	214	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	10081518	10081557	AT3TE41965	.	-	HELITRONY1D	Helitron	RC	39	tiny	756	high	3508200	chromoarm	253	no-CHH	no-CHH	.	.	.	.	.
Chr3	10081557	10082995	AT3TE41970	.	-	ATREP11	Helitron	RC	1438	short	841	high	3506762	chromoarm	292	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10093186	10093748	AT3TE42010	.	-	ATREP10D	Helitron	RC	562	short	1295	high	3496009	chromoarm	795	no-CHH	no-CHH	.	.	.	.	.
Chr3	10104338	10104486	AT3TE42060	.	+	RathE3_cons	.	RathE3_cons	148	short	104	medium	3485271	chromoarm	2251	no-CHH	no-CHH	.	.	.	.	.
Chr3	10104896	10105360	AT3TE42065	.	+	ATREP11A	Helitron	RC	464	short	95	medium	3484397	chromoarm	2809	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	10106066	10106099	AT3TE42070	.	+	ATCOPIA49	Copia	LTR	33	tiny	34	low	3483658	chromoarm	3979	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	10106099	10111467	AT3TE42075	.	+	ATCOPIA49	Copia	LTR	5368	long	34	low	3478290	chromoarm	174	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	10112017	10112175	AT3TE42080	.	-	RathE3_cons	.	RathE3_cons	159	short	104	medium	3477582	chromoarm	222	.	.	.	.	.	.	.
Chr3	10112537	10112562	AT3TE42085	.	-	ATREP15	Helitron	RC	25	tiny	1003	high	3477195	chromoarm	743	no-CHH	no-RdDM	.	.	.	.	.
Chr3	10112562	10113280	AT3TE42090	.	+	ATREP15	Helitron	RC	718	short	1003	high	3476477	chromoarm	768	no-CHH	no-CHH	.	.	.	.	.
Chr3	10113707	10114158	AT3TE42095	.	+	HELITRON4	Helitron	RC	451	short	199	medium	3475599	chromoarm	33	no-RdDM	no-CHH	.	.	.	.	.
Chr3	10128038	10128096	AT3TE42150	.	+	ATENSPM6	En-Spm	DNA	58	tiny	151	medium	3461661	chromoarm	142	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	10128864	10129024	AT3TE42155	.	-	RathE3_cons	.	RathE3_cons	160	short	104	medium	3460733	chromoarm	434	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	10136918	10137716	AT3TE42180	.	-	ARNOLDY2	MuDR	DNA	798	short	288	high	3452041	chromoarm	807	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	10140740	10140854	AT3TE42190	.	+	ATSINE2A	.	SINE	114	short	33	low	3448903	chromoarm	0	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	10143844	10144217	AT3TE42200	.	+	ATCOPIA48	Copia	LTR	373	short	15	low	3445540	chromoarm	821	no-CHH	no-CHH	.	.	.	.	.
Chr3	10146392	10146695	AT3TE42205	.	+	ATREP5	Helitron	RC	303	short	624	high	3443062	chromoarm	675	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10150540	10150960	AT3TE42215	.	-	BRODYAGA1A	MuDR	DNA	420	short	586	high	3438797	chromoarm	97	no-CHH	no-CHH	.	.	.	.	.
Chr3	10151308	10152261	AT3TE42220	.	+	ATREP3	Helitron	RC	953	short	1439	high	3437496	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	10152261	10152318	AT3TE42225	.	+	ATREP10B	Helitron	RC	57	tiny	491	high	3437439	chromoarm	591	no-CHH	no-CHH	.	.	.	.	.
Chr3	10162325	10162909	AT3TE42260	.	+	ATREP3	Helitron	RC	584	short	1439	high	3426848	chromoarm	331	no-CHH	no-CHH	.	.	.	.	.
Chr3	10166811	10168575	AT3TE42270	.	+	VANDAL3	MuDR	DNA	1764	short	177	medium	3421182	chromoarm	261	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	10168738	10169170	AT3TE42275	.	+	VANDAL3	MuDR	DNA	433	short	177	medium	3420587	chromoarm	71	.	.	LowExpressed	.	.	.	.
Chr3	10171480	10171719	AT3TE42280	.	-	ATMU1	MuDR	DNA	239	short	59	medium	3418038	chromoarm	250	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	10176333	10176468	AT3TE42290	.	-	TNAT1A	.	DNA	135	short	162	medium	3413289	chromoarm	778	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10176586	10176636	AT3TE42295	.	-	HELITRONY3	Helitron	RC	50	tiny	1399	high	3413121	chromoarm	1031	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	10176657	10177809	AT3TE42300	.	+	ATREP8	Helitron	RC	1152	short	75	medium	3411948	chromoarm	290	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10177822	10178026	AT3TE42305	.	-	ATLINE1_4	L1	LINE	204	short	102	medium	3411731	chromoarm	73	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	10186192	10187167	AT3TE42330	.	-	ATREP10D	Helitron	RC	975	short	1295	high	3402590	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	10187167	10187218	AT3TE42335	.	-	ATREP10D	Helitron	RC	51	tiny	1295	high	3402539	chromoarm	668	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	10187218	10187441	AT3TE42340	.	+	TSCL	.	LINE?	223	short	81	medium	3402316	chromoarm	719	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	10190656	10191144	AT3TE42350	.	+	ATLINE1A	L1	LINE	488	short	289	high	3398613	chromoarm	1094	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10191248	10191309	AT3TE42355	.	-	SIMPLEHAT1	HAT	DNA	61	tiny	56	medium	3398448	chromoarm	1174	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr3	10191309	10192151	AT3TE42360	.	+	ATREP10D	Helitron	RC	842	short	1295	high	3397606	chromoarm	332	no-CHH	no-CHH	.	.	.	.	.
Chr3	10200582	10201124	AT3TE42400	.	-	ATREP8	Helitron	RC	542	short	75	medium	3388633	chromoarm	923	no-CHH	no-CHH	.	.	.	.	.
Chr3	10201124	10201182	AT3TE42405	.	+	ATREP3	Helitron	RC	58	tiny	1439	high	3388575	chromoarm	1465	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	10201182	10202621	AT3TE42410	.	-	ATREP7	Helitron	RC	1439	short	164	medium	3387136	chromoarm	1523	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10202630	10202994	AT3TE42415	.	+	ATREP3	Helitron	RC	364	short	1439	high	3386763	chromoarm	2494	no-CHH	no-CHH	.	.	.	.	.
Chr3	10204282	10204409	AT3TE42420	.	+	HELITRONY3A	Helitron	RC	127	short	49	low	3385348	chromoarm	1079	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	10213616	10213934	AT3TE42460	.	-	BOMZH1	MuDR	DNA	319	short	28	low	3375823	chromoarm	341	.	.	.	.	.	.	.
Chr3	10216902	10217499	AT3TE42470	.	+	ATDNA2T9C	MuDR	DNA	597	short	242	high	3372258	chromoarm	171	no-CHH	no-CHH	.	.	.	.	.
Chr3	10222652	10223004	AT3TE42490	.	+	TSCL	.	LINE?	352	short	81	medium	3366753	chromoarm	738	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	10224063	10224209	AT3TE42495	.	-	ATIS112A	Harbinger	DNA	146	short	173	medium	3365548	chromoarm	0	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	10228194	10228862	AT3TE42505	.	-	HELITRONY3	Helitron	RC	668	short	1399	high	3360895	chromoarm	42	no-CHH	no-CHH	.	.	.	.	.
Chr3	10228862	10228996	AT3TE42510	.	+	ATREP3	Helitron	RC	134	short	1439	high	3360761	chromoarm	292	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	10228996	10229019	AT3TE42515	.	+	ATREP11	Helitron	RC	23	tiny	841	high	3360738	chromoarm	269	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	10231687	10232150	AT3TE42525	.	-	ATREP10D	Helitron	RC	463	short	1295	high	3357607	chromoarm	156	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10237854	10238369	AT3TE42540	.	-	ATREP3	Helitron	RC	515	short	1439	high	3351388	chromoarm	361	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	10242878	10243070	AT3TE42550	.	+	ATHATN10	HAT	DNA	192	short	48	low	3346687	chromoarm	780	no-CHH	no-CHH	.	.	.	.	.
Chr3	10254593	10254962	AT3TE42600	.	-	ATREP10D	Helitron	RC	369	short	1295	high	3334795	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10262344	10262464	AT3TE42630	.	+	VANDAL5A	MuDR	DNA	120	short	56	medium	3327293	chromoarm	1014	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10262503	10263076	AT3TE42635	.	+	LIMPET1	MuDR	DNA	573	short	116	medium	3326681	chromoarm	1173	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10263130	10263537	AT3TE42640	.	+	VANDAL5A	MuDR	DNA	407	short	56	medium	3326220	chromoarm	1800	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10263767	10263961	AT3TE42645	.	+	ATDNAI27T9C	MuDR	DNA	194	short	108	medium	3325796	chromoarm	2437	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	10263961	10264796	AT3TE42650	.	-	ATREP15	Helitron	RC	835	short	1003	high	3324961	chromoarm	2631	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10264796	10268428	AT3TE42655	.	-	ATREP10D	Helitron	RC	3632	medium	1295	high	3321329	chromoarm	875	no-CHH	no-CHH	.	.	.	.	.
Chr3	10268428	10269088	AT3TE42660	.	-	ATREP4	Helitron	RC	660	short	832	high	3320669	chromoarm	215	no-CHH	no-CHH	.	.	.	.	.
Chr3	10269088	10269161	AT3TE42665	.	+	ATREP4	Helitron	RC	73	tiny	832	high	3320596	chromoarm	142	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	10269161	10269237	AT3TE42670	.	+	ATREP3	Helitron	RC	76	tiny	1439	high	3320520	chromoarm	66	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	10271313	10271765	AT3TE42675	.	+	HELITRONY1D	Helitron	RC	452	short	756	high	3317992	chromoarm	110	no-CHH	no-CHH	.	.	.	.	.
Chr3	10272219	10272440	AT3TE42680	.	+	ATMU10	MuDR	DNA	221	short	87	medium	3317317	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	10283870	10283921	AT3TE42730	.	-	HELITRONY1D	Helitron	RC	51	tiny	756	high	3305836	chromoarm	78	no-CHH	no-CHH	.	.	.	.	.
Chr3	10283921	10284231	AT3TE42735	.	-	ATREP5	Helitron	RC	310	short	624	high	3305526	chromoarm	129	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10284231	10284554	AT3TE42740	.	+	TSCL	.	LINE?	323	short	81	medium	3305203	chromoarm	265	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	10284554	10284718	AT3TE42745	.	-	HELITRONY1D	Helitron	RC	164	short	756	high	3305039	chromoarm	101	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	10291347	10292165	AT3TE42770	.	+	ATREP4	Helitron	RC	818	short	832	high	3297592	chromoarm	635	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10292987	10293043	AT3TE42775	.	+	ARNOLDY2	MuDR	DNA	56	tiny	288	high	3296714	chromoarm	2275	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	10293043	10293078	AT3TE42780	.	+	ATTIRX1C	.	DNA	35	tiny	39	low	3296679	chromoarm	2331	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	10293078	10293244	AT3TE42785	.	-	ARNOLDY1	MuDR	DNA	166	short	237	high	3296513	chromoarm	2366	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10293244	10293485	AT3TE42790	.	-	ARNOLDY1	MuDR	DNA	241	short	237	high	3296272	chromoarm	2532	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10293485	10297584	AT3TE42795	.	+	ARNOLDY1	MuDR	DNA	4099	medium	237	high	3292173	chromoarm	2773	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10297584	10298705	AT3TE42800	.	-	HELITRONY3	Helitron	RC	1121	short	1399	high	3291052	chromoarm	3222	no-CHH	no-CHH	.	.	.	.	.
Chr3	10298797	10299002	AT3TE42805	.	+	HELITRONY3	Helitron	RC	205	short	1399	high	3290755	chromoarm	2925	no-CHH	no-CHH	.	.	.	.	.
Chr3	10300048	10300250	AT3TE42810	.	+	ATLINE1_6	L1	LINE	202	short	129	medium	3289507	chromoarm	1677	no-CHH	no-CHH	.	.	.	.	.
Chr3	10302063	10302243	AT3TE42815	.	-	ATCOPIA43	Copia	LTR	180	short	29	low	3287514	chromoarm	0	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	10308988	10309480	AT3TE42840	.	-	HELITRONY1D	Helitron	RC	492	short	756	high	3280277	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	10313642	10314813	AT3TE42850	.	-	ATREP5	Helitron	RC	1171	short	624	high	3274944	chromoarm	435	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10314813	10314911	AT3TE42855	.	-	ATREP11	Helitron	RC	98	tiny	841	high	3274846	chromoarm	337	no-CHH	no-CHH	.	.	.	.	.
Chr3	10319895	10321636	AT3TE42870	.	+	ATREP3	Helitron	RC	1741	short	1439	high	3268121	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10321636	10321792	AT3TE42875	.	+	ATREP3	Helitron	RC	156	short	1439	high	3267965	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	10321792	10321814	AT3TE42880	.	+	ATREP3	Helitron	RC	22	tiny	1439	high	3267943	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	10321814	10322813	AT3TE42885	.	+	ATREP10D	Helitron	RC	999	short	1295	high	3266944	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	10336049	10336230	AT3TE42940	.	+	ATCOPIA59	Copia	LTR	181	short	20	low	3253527	chromoarm	761	no-CHH	no-CHH	.	.	.	.	.
Chr3	10337331	10337456	AT3TE42945	.	-	ATREP10B	Helitron	RC	125	short	491	high	3252301	chromoarm	972	no-CHH	no-CHH	.	.	.	.	.
Chr3	10338002	10338136	AT3TE42950	.	-	ATDNA2T9C	MuDR	DNA	134	short	242	high	3251621	chromoarm	292	no-CHH	no-CHH	.	.	.	.	.
Chr3	10339137	10339605	AT3TE42955	.	-	HELITRONY1D	Helitron	RC	468	short	756	high	3250152	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	10339748	10345640	AT3TE42960	.	+	TA11	L1	LINE	5892	long	157	medium	3244117	chromoarm	591	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	10345642	10345969	AT3TE42965	.	-	TNAT1A	.	DNA	327	short	162	medium	3243788	chromoarm	4837	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	10348734	10349517	AT3TE42975	.	+	ATLINEIII	L1	LINE	783	short	196	medium	3240240	chromoarm	1289	no-CHH	no-CHH	.	.	.	.	.
Chr3	10349517	10349572	AT3TE42980	.	+	ATLINE1_3A	L1	LINE	55	tiny	160	medium	3240185	chromoarm	1234	no-RdDM	no-CHH	.	.	.	.	.
Chr3	10349572	10350587	AT3TE42985	.	+	ATREP3	Helitron	RC	1015	short	1439	high	3239170	chromoarm	219	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	10350588	10350629	AT3TE42990	.	-	ATREP10D	Helitron	RC	41	tiny	1295	high	3239128	chromoarm	177	no-CHH	no-CHH	.	.	.	.	.
Chr3	10352153	10352355	AT3TE42995	.	-	ATLINE1_3A	L1	LINE	202	short	160	medium	3237402	chromoarm	215	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	10353816	10354290	AT3TE43000	.	-	ATREP10D	Helitron	RC	474	short	1295	high	3235467	chromoarm	177	no-CHH	no-CHH	.	.	.	.	.
Chr3	10354290	10354607	AT3TE43005	.	-	HELITRONY1B	Helitron	RC	317	short	414	high	3235150	chromoarm	651	no-CHH	no-CHH	.	.	.	.	.
Chr3	10354607	10354634	AT3TE43010	.	-	HELITRONY3	Helitron	RC	27	tiny	1399	high	3235123	chromoarm	968	no-CHH	no-CHH	.	.	.	.	.
Chr3	10354634	10354930	AT3TE43015	.	+	BRODYAGA1A	MuDR	DNA	296	short	586	high	3234827	chromoarm	930	no-CHH	no-CHH	.	.	.	.	.
Chr3	10356480	10357165	AT3TE43020	.	-	HELITRONY1D	Helitron	RC	685	short	756	high	3232592	chromoarm	56	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	10369226	10369338	AT3TE43070	.	-	ATREP5	Helitron	RC	112	short	624	high	3220419	chromoarm	254	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	10373031	10374065	AT3TE43080	.	+	TAG2	HAT	DNA	1034	short	86	medium	3215692	chromoarm	713	PolIV-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	10373241,10373243	10373594,10374832	+,+	transcript_id-"53a15238-1ad4-46d5-8bd5-a8bdd0df352b|5",transcript_id-"b061eec5-2856-4607-9210-27cef031ff5d|3"
Chr3	10375322	10375827	AT3TE43085	.	+	BRODYAGA2	MuDR	DNA	505	short	525	high	3213930	chromoarm	69	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	10376364	10377244	AT3TE43090	.	+	HELITRONY3	Helitron	RC	880	short	1399	high	3212513	chromoarm	6	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	10377244	10377363	AT3TE43095	.	-	ATREP5	Helitron	RC	119	short	624	high	3212394	chromoarm	684	no-CHH	no-CHH	.	.	.	.	.
Chr3	10377527	10377667	AT3TE43100	.	+	ATCOPIA28	Copia	LTR	140	short	81	medium	3212090	chromoarm	380	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	10385084	10385426	AT3TE43130	.	-	ATCOPIA52	Copia	LTR	342	short	7	low	3204331	chromoarm	2491	no-CHH	no-CHH	.	.	.	.	.
Chr3	10385426	10385621	AT3TE43135	.	-	ATCOPIA51	Copia	LTR	195	short	14	low	3204136	chromoarm	2833	no-CHH	no-CHH	.	.	.	.	.
Chr3	10391577	10392484	AT3TE43160	.	+	ATREP4	Helitron	RC	907	short	832	high	3197273	chromoarm	33	no-CHH	no-CHH	.	.	.	.	.
Chr3	10395926	10396020	AT3TE43170	.	+	ATCOPIA37	Copia	LTR	94	tiny	32	low	3193737	chromoarm	65	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	10396326	10397920	AT3TE43175	.	+	ATCOPIA37	Copia	LTR	1594	short	32	low	3191837	chromoarm	465	no-CHH	no-CHH	.	.	.	.	.
Chr3	10398063	10398408	AT3TE43180	.	+	ATCOPIA37	Copia	LTR	345	short	32	low	3191349	chromoarm	2202	no-CHH	no-CHH	.	.	.	.	.
Chr3	10398408	10399196	AT3TE43185	.	-	ATREP15	Helitron	RC	788	short	1003	high	3190561	chromoarm	2547	no-CHH	no-CHH	.	.	.	.	.
Chr3	10399196	10399294	AT3TE43190	.	-	ATREP15	Helitron	RC	98	tiny	1003	high	3190463	chromoarm	3335	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	10399294	10399348	AT3TE43195	.	-	ATREP4	Helitron	RC	54	tiny	832	high	3190409	chromoarm	3433	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	10400030	10400622	AT3TE43200	.	+	ATCOPIA37	Copia	LTR	592	short	32	low	3189135	chromoarm	2263	no-CHH	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	10401372	10400170	-	transcript_id-"1658a009-4cfc-459d-a1da-0f8ffd588417|6"
Chr3	10402041	10402068	AT3TE43205	.	-	HELITRONY3	Helitron	RC	27	tiny	1399	high	3187689	chromoarm	817	no-CHH	no-CHH	.	.	.	.	.
Chr3	10402068	10402895	AT3TE43210	.	-	HELITRONY2	Helitron	RC	827	short	198	medium	3186862	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	10402895	10402974	AT3TE43215	.	+	ATREP4	Helitron	RC	79	tiny	832	high	3186783	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10404824	10405397	AT3TE43220	.	+	ATREP3	Helitron	RC	573	short	1439	high	3184360	chromoarm	1369	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10405397	10405961	AT3TE43225	.	+	ATREP2	Helitron	RC	564	short	164	medium	3183796	chromoarm	1942	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10405961	10406086	AT3TE43230	.	+	ATREP1	Helitron	RC	125	short	498	high	3183671	chromoarm	2156	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	10406170	10407431	AT3TE43235	.	+	HELITRONY3	Helitron	RC	1261	short	1399	high	3182326	chromoarm	811	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	10410061	10411313	AT3TE43245	.	+	HELITRONY3	Helitron	RC	1252	short	1399	high	3178444	chromoarm	428	no-CHH	no-CHH	.	.	.	.	.
Chr3	10412046	10412499	AT3TE43250	.	-	HELITRON4	Helitron	RC	453	short	199	medium	3177258	chromoarm	2413	no-CHH	no-CHH	.	.	.	.	.
Chr3	10414025	10415387	AT3TE43255	.	+	SIMPLEHAT2	HAT	DNA	1362	short	73	medium	3174370	chromoarm	2518	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10416850	10416933	AT3TE43260	.	+	ATREP7	Helitron	RC	83	tiny	164	medium	3172824	chromoarm	972	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	10419728	10419938	AT3TE43270	.	-	ATTIRTA1	Tc1	DNA	210	short	95	medium	3169819	chromoarm	579	no-CHH	no-CHH	.	.	.	.	.
Chr3	10420569	10421416	AT3TE43275	.	+	BRODYAGA2	MuDR	DNA	847	short	525	high	3168341	chromoarm	1420	no-CHH	no-CHH	.	.	.	.	.
Chr3	10421711	10421947	AT3TE43280	.	+	SIMPLEHAT2	HAT	DNA	236	short	73	medium	3167810	chromoarm	2373	no-CHH	no-CHH	.	.	.	.	.
Chr3	10422099	10422772	AT3TE43285	.	+	HELITRONY3	Helitron	RC	673	short	1399	high	3166985	chromoarm	1548	no-CHH	no-CHH	.	.	.	.	.
Chr3	10422772	10423974	AT3TE43290	.	-	BRODYAGA1A	MuDR	DNA	1202	short	586	high	3165783	chromoarm	346	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10423974	10424059	AT3TE43295	.	+	HELITRONY3	Helitron	RC	85	tiny	1399	high	3165698	chromoarm	261	no-CHH	no-CHH	.	.	.	.	.
Chr3	10432107	10433624	AT3TE43320	.	-	HELITRONY3	Helitron	RC	1517	short	1399	high	3156133	chromoarm	929	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10432539	10433078	AT3TE43325	.	-	ATHPOGON1	Pogo	DNA	539	short	174	medium	3156679	chromoarm	1361	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10433624	10433741	AT3TE43330	.	+	HELITRONY1E	Helitron	RC	117	short	447	high	3156016	chromoarm	1397	no-CHH	no-CHH	.	.	.	.	.
Chr3	10433741	10433774	AT3TE43335	.	+	ATREP11	Helitron	RC	33	tiny	841	high	3155983	chromoarm	1364	no-CHH	no-CHH	.	.	.	.	.
Chr3	10433774	10433797	AT3TE43340	.	-	ATREP3	Helitron	RC	23	tiny	1439	high	3155960	chromoarm	1341	no-CHH	no-CHH	.	.	.	.	.
Chr3	10438397	10439421	AT3TE43350	.	-	ATREP10D	Helitron	RC	1024	short	1295	high	3150336	chromoarm	129	no-CHH	no-CHH	.	.	.	.	.
Chr3	10440533	10440660	AT3TE43355	.	+	VANDAL16	MuDR	DNA	127	short	42	low	3149097	chromoarm	2265	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	10441529	10441679	AT3TE43360	.	+	VANDAL16	MuDR	DNA	150	short	42	low	3148078	chromoarm	1304	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	10441684	10441898	AT3TE43365	.	-	TSCL	.	LINE?	214	short	81	medium	3147859	chromoarm	1085	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10442011	10442161	AT3TE43370	.	+	ATMUN1	MuDR	DNA	150	short	107	medium	3147596	chromoarm	822	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	10442161	10442732	AT3TE43375	.	+	ATMUN1	MuDR	DNA	571	short	107	medium	3147025	chromoarm	251	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10443359	10443882	AT3TE43380	.	+	ATREP1	Helitron	RC	523	short	498	high	3145875	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	10447088	10447119	AT3TE43390	.	-	ATREP10B	Helitron	RC	31	tiny	491	high	3142638	chromoarm	242	no-CHH	no-CHH	.	.	.	.	.
Chr3	10447119	10447227	AT3TE43395	.	+	HELITRONY2	Helitron	RC	108	short	198	medium	3142530	chromoarm	273	no-CHH	no-CHH	.	.	.	.	.
Chr3	10447227	10447778	AT3TE43400	.	-	HELITRON4	Helitron	RC	551	short	199	medium	3141979	chromoarm	185	no-CHH	no-CHH	.	.	.	.	.
Chr3	10447778	10447906	AT3TE43405	.	+	HELITRONY2	Helitron	RC	128	short	198	medium	3141851	chromoarm	57	no-CHH	no-CHH	.	.	.	.	.
Chr3	10448695	10448799	AT3TE43410	.	-	ATLINE1A	L1	LINE	104	short	289	high	3140958	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10449618	10450104	AT3TE43415	.	-	ATHATN1	HAT	DNA	486	short	69	medium	3139653	chromoarm	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	10453641	10454350	AT3TE43425	.	-	ATHPOGON2	Pogo	DNA	709	short	27	low	3135407	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10454350	10454441	AT3TE43430	.	+	ATHPOGON3	Pogo	DNA	91	tiny	118	medium	3135316	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	10456781	10457022	AT3TE43435	.	-	ATREP4	Helitron	RC	241	short	832	high	3132735	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	10457032	10458506	AT3TE43440	.	-	HELITRONY3	Helitron	RC	1474	short	1399	high	3131251	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	10458506	10458676	AT3TE43445	.	+	ARNOLD4	MuDR	DNA	170	short	23	low	3131081	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	10459718	10459885	AT3TE43450	.	-	TAG2	HAT	DNA	168	short	86	medium	3129872	chromoarm	0	.	.	.	.	.	.	.
Chr3	10460958	10460989	AT3TE43455	.	+	VANDAL1	MuDR	DNA	31	tiny	80	medium	3128768	chromoarm	145	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10460989	10463046	AT3TE43460	.	+	VANDAL1	MuDR	DNA	2057	medium	80	medium	3126711	chromoarm	176	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10463159	10463356	AT3TE43465	.	+	VANDAL2N1	MuDR	DNA	197	short	51	medium	3126401	chromoarm	487	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	10463418	10465097	AT3TE43470	.	+	VANDAL1N1	MuDR	DNA	1679	short	52	medium	3124660	chromoarm	0	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	10465097	10465129	AT3TE43475	.	+	VANDAL1N1	MuDR	DNA	32	tiny	52	medium	3124628	chromoarm	457	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	10467464	10467738	AT3TE43480	.	-	ATREP19	.	DNA	274	short	189	medium	3122019	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	10469022	10469097	AT3TE43485	.	-	ATREP3	Helitron	RC	75	tiny	1439	high	3120660	chromoarm	318	no-CHH	no-RdDM	.	.	.	.	.
Chr3	10469097	10469495	AT3TE43490	.	+	BRODYAGA2	MuDR	DNA	398	short	525	high	3120262	chromoarm	393	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	10475684	10475734	AT3TE43520	.	-	ATREP4	Helitron	RC	50	tiny	832	high	3114023	chromoarm	1949	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10475734	10476271	AT3TE43525	.	+	ATHPOGON1	Pogo	DNA	537	short	174	medium	3113486	chromoarm	1999	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	10476271	10477032	AT3TE43530	.	+	TNAT1A	.	DNA	761	short	162	medium	3112725	chromoarm	2536	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	10477032	10477118	AT3TE43535	.	+	TNAT1A	.	DNA	86	tiny	162	medium	3112639	chromoarm	3297	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	10477118	10477271	AT3TE43540	.	+	ATREP18	.	DNA	153	short	391	high	3112486	chromoarm	3383	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	10477459	10477634	AT3TE43545	.	+	RathE1_cons	.	RathE1_cons	175	short	213	high	3112123	chromoarm	3724	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	10477961	10483743	AT3TE43550	.	-	ATLINE1_6	L1	LINE	5782	long	129	medium	3106014	chromoarm	1557	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	10492926	10493125	AT3TE43590	.	+	HARBINGER	Harbinger	DNA	199	short	90	medium	3096632	chromoarm	5235	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	10493126	10493216	AT3TE43595	.	+	ATMUNX1	MuDR	DNA	91	tiny	155	medium	3096541	chromoarm	5144	.	.	.	.	.	.	.
Chr3	10493461	10493716	AT3TE43600	.	+	ATLINE1_6	L1	LINE	255	short	129	medium	3096041	chromoarm	4644	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	10494693	10494973	AT3TE43605	.	+	ATCOPIA50	Copia	LTR	280	short	17	low	3094784	chromoarm	3387	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	10495018	10495694	AT3TE43610	.	+	ATCOPIA74	Copia	LTR	676	short	7	low	3094063	chromoarm	2666	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	10495708	10496814	AT3TE43615	.	+	ATLINE2	L1	LINE	1106	short	138	medium	3092943	chromoarm	1546	no-CHH	no-CHH	ExpressedAndAnnotated	10494644	10496814	+	transcript_id-"b53145e0-67dc-4d10-9153-09e9d5ca5a3b|9"
Chr3	10496814	10497195	AT3TE43620	.	+	ATCOPIA76	Copia	LTR	381	short	7	low	3092562	chromoarm	1165	no-CHH	no-CHH	.	.	.	.	.
Chr3	10500233	10500463	AT3TE43630	.	+	ATCOPIA76	Copia	LTR	230	short	7	low	3089294	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	10500633	10500913	AT3TE43635	.	+	ATCOPIA50	Copia	LTR	280	short	17	low	3088844	chromoarm	273	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	10505113	10505778	AT3TE43645	.	+	ATREP15	Helitron	RC	665	short	1003	high	3083979	chromoarm	331	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	10509105	10509520	AT3TE43655	.	-	HELITRONY3	Helitron	RC	415	short	1399	high	3080237	chromoarm	38	no-CHH	no-CHH	.	.	.	.	.
Chr3	10509520	10511764	AT3TE43660	.	+	ATREP5	Helitron	RC	2244	medium	624	high	3077993	chromoarm	453	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	10510077,10510077,10510617	10510349,10510474,10510906	+,+,+	transcript_id-"f40f98e5-729a-4d49-82e3-0139f59b08ce|3",transcript_id-"822e284a-d04b-424b-81fb-a8a92c07ecfc|3",transcript_id-"97466185-4f27-4403-9a1f-8339eea60f37|3"
Chr3	10511764	10511835	AT3TE43665	.	+	ATREP3	Helitron	RC	71	tiny	1439	high	3077922	chromoarm	399	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10511835	10511938	AT3TE43670	.	+	ATREP11	Helitron	RC	103	short	841	high	3077819	chromoarm	296	no-CHH	no-CHH	.	.	.	.	.
Chr3	10517673	10517944	AT3TE43690	.	+	RP1_AT	.	DNA	271	short	87	medium	3071813	chromoarm	137	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10522043	10522502	AT3TE43700	.	+	ATCOPIA37	Copia	LTR	459	short	32	low	3067255	chromoarm	775	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	10523477	10523884	AT3TE43705	.	-	BRODYAGA1A	MuDR	DNA	407	short	586	high	3065873	chromoarm	53	no-CHH	no-CHH	.	.	.	.	.
Chr3	10523884	10523909	AT3TE43710	.	+	ATMUN1	MuDR	DNA	25	tiny	107	medium	3065848	chromoarm	460	no-CHH	no-CHH	.	.	.	.	.
Chr3	10530766	10531241	AT3TE43740	.	-	VANDAL22	MuDR	DNA	475	short	48	low	3058516	chromoarm	567	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	10531241	10532212	AT3TE43745	.	-	VANDAL22	MuDR	DNA	971	short	48	low	3057545	chromoarm	176	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	10535167	10535406	AT3TE43755	.	-	ATHILA4D_LTR	Gypsy	LTR	239	short	106	medium	3054351	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10536985	10537009	AT3TE43760	.	+	TNAT1A	.	DNA	24	tiny	162	medium	3052748	chromoarm	841	no-CHH	no-CHH	.	.	.	.	.
Chr3	10537009	10537471	AT3TE43765	.	+	TNAT1A	.	DNA	462	short	162	medium	3052286	chromoarm	865	no-CHH	no-CHH	.	.	.	.	.
Chr3	10538201	10538630	AT3TE43770	.	-	HELITRON4	Helitron	RC	429	short	199	medium	3051127	chromoarm	94	no-CHH	no-CHH	.	.	.	.	.
Chr3	10541773	10541936	AT3TE43780	.	+	ATREP19	.	DNA	163	short	189	medium	3047821	chromoarm	202	no-CHH	no-CHH	.	.	.	.	.
Chr3	10541936	10542392	AT3TE43785	.	-	ARNOLDY2	MuDR	DNA	456	short	288	high	3047365	chromoarm	365	no-CHH	no-CHH	.	.	.	.	.
Chr3	10542578	10542611	AT3TE43790	.	+	ATREP6	Helitron	RC	33	tiny	181	medium	3047146	chromoarm	1007	no-CHH	no-CHH	.	.	.	.	.
Chr3	10542611	10542836	AT3TE43795	.	-	ATREP4	Helitron	RC	225	short	832	high	3046921	chromoarm	1040	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	10542836	10544367	AT3TE43800	.	+	ATREP10D	Helitron	RC	1531	short	1295	high	3045390	chromoarm	1265	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	10544367	10544397	AT3TE43805	.	+	BRODYAGA1A	MuDR	DNA	30	tiny	586	high	3045360	chromoarm	2796	no-CHH	no-CHH	.	.	.	.	.
Chr3	10545194	10545357	AT3TE43810	.	-	ATREP15	Helitron	RC	163	short	1003	high	3044400	chromoarm	2515	no-CHH	no-CHH	.	.	.	.	.
Chr3	10545359	10546148	AT3TE43815	.	-	ATREP3	Helitron	RC	789	short	1439	high	3043609	chromoarm	1724	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	10546150	10547027	AT3TE43820	.	+	ATHILA4D_LTR	Gypsy	LTR	877	short	106	medium	3042730	chromoarm	845	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10547035	10547368	AT3TE43825	.	+	ATHPOGON1	Pogo	DNA	334	short	174	medium	3042389	chromoarm	504	.	.	.	.	.	.	.
Chr3	10547369	10547794	AT3TE43830	.	+	BRODYAGA2	MuDR	DNA	426	short	525	high	3041963	chromoarm	78	.	.	.	.	.	.	.
Chr3	10553401	10553842	AT3TE43850	.	+	ATREP11	Helitron	RC	441	short	841	high	3035915	chromoarm	2295	no-CHH	no-CHH	.	.	.	.	.
Chr3	10553842	10553873	AT3TE43855	.	+	ATHPOGON2	Pogo	DNA	31	tiny	27	low	3035884	chromoarm	2736	no-CHH	no-CHH	.	.	.	.	.
Chr3	10553873	10553908	AT3TE43860	.	+	BRODYAGA2	MuDR	DNA	35	tiny	525	high	3035849	chromoarm	2767	no-CHH	no-CHH	.	.	.	.	.
Chr3	10554026	10554171	AT3TE43865	.	+	ARNOLDY2	MuDR	DNA	145	short	288	high	3035586	chromoarm	2920	no-CHH	no-CHH	.	.	.	.	.
Chr3	10554171	10554355	AT3TE43870	.	-	HELITRONY3	Helitron	RC	184	short	1399	high	3035402	chromoarm	3065	no-CHH	no-CHH	.	.	.	.	.
Chr3	10554355	10555961	AT3TE43875	.	+	ATREP10A	Helitron	RC	1606	short	279	high	3033796	chromoarm	3249	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	10555961	10558868	AT3TE43880	.	-	ATREP3	Helitron	RC	2907	medium	1439	high	3030889	chromoarm	4855	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10558868	10558904	AT3TE43885	.	+	HELITRONY3	Helitron	RC	36	tiny	1399	high	3030853	chromoarm	7201	PolIV-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	10558904	10558945	AT3TE43890	.	+	ATREP15	Helitron	RC	41	tiny	1003	high	3030812	chromoarm	7160	no-RdDM	no-CHH	.	.	.	.	.
Chr3	10560072	10560431	AT3TE43895	.	+	ATGP2	Gypsy	LTR	359	short	48	low	3029326	chromoarm	5674	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	10560760	10561068	AT3TE43900	.	+	ATGP2	Gypsy	LTR	308	short	48	low	3028689	chromoarm	5037	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	10561603	10562083	AT3TE43905	.	+	ATLANTYS1	Gypsy	LTR	480	short	153	medium	3027674	chromoarm	4022	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	10562310	10562425	AT3TE43910	.	-	ATHILA8A	Gypsy	LTR	115	short	97	medium	3027332	chromoarm	3680	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	10562499	10562690	AT3TE43915	.	-	ATMU1	MuDR	DNA	192	short	59	medium	3027067	chromoarm	3415	.	.	.	.	.	.	.
Chr3	10563289	10563535	AT3TE43920	.	-	BRODYAGA2	MuDR	DNA	246	short	525	high	3026222	chromoarm	2570	no-CHH	no-CHH	.	.	.	.	.
Chr3	10563535	10564356	AT3TE43925	.	+	ATREP15	Helitron	RC	821	short	1003	high	3025401	chromoarm	1749	no-CHH	no-CHH	.	.	.	.	.
Chr3	10564356	10565242	AT3TE43930	.	+	ATHILA4D_LTR	Gypsy	LTR	886	short	106	medium	3024515	chromoarm	863	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10565243	10565267	AT3TE43935	.	+	ATHILA4D_LTR	Gypsy	LTR	25	tiny	106	medium	3024490	chromoarm	838	.	.	.	.	.	.	.
Chr3	10565268	10565601	AT3TE43940	.	+	ATHPOGON1	Pogo	DNA	334	short	174	medium	3024156	chromoarm	504	.	.	.	.	.	.	.
Chr3	10565602	10566027	AT3TE43945	.	+	BRODYAGA2	MuDR	DNA	426	short	525	high	3023730	chromoarm	78	.	.	.	.	.	.	.
Chr3	10571527	10571673	AT3TE43960	.	+	ARNOLD4	MuDR	DNA	146	short	23	low	3018084	chromoarm	4264	no-CHH	no-CHH	.	.	.	.	.
Chr3	10571673	10572168	AT3TE43965	.	+	ATREP15	Helitron	RC	495	short	1003	high	3017589	chromoarm	4410	no-CHH	no-CHH	.	.	.	.	.
Chr3	10572168	10572272	AT3TE43970	.	+	HELITRONY3	Helitron	RC	104	short	1399	high	3017485	chromoarm	4688	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	10572272	10572424	AT3TE43975	.	+	ATREP10D	Helitron	RC	152	short	1295	high	3017333	chromoarm	4536	no-CHH	no-CHH	.	.	.	.	.
Chr3	10572424	10572563	AT3TE43980	.	-	ATREP10D	Helitron	RC	139	short	1295	high	3017194	chromoarm	4397	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	10572563	10574171	AT3TE43985	.	+	ATREP11	Helitron	RC	1608	short	841	high	3015586	chromoarm	2789	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	10574172	10575801	AT3TE43990	.	-	ATREP3	Helitron	RC	1629	short	1439	high	3013956	chromoarm	1159	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10575801	10576794	AT3TE43995	.	+	ATREP10D	Helitron	RC	993	short	1295	high	3012963	chromoarm	166	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	10577157	10581824	AT3TE44000	.	-	ATCOPIA31A	Copia	LTR	4667	medium	5	low	3007933	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	10583525	10583593	AT3TE44005	.	-	HELITRONY3	Helitron	RC	68	tiny	1399	high	3006164	chromoarm	248	no-CHH	no-CHH	.	.	.	.	.
Chr3	10583593	10586029	AT3TE44010	.	-	ATREP4	Helitron	RC	2436	medium	832	high	3003728	chromoarm	316	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10586029	10586463	AT3TE44015	.	+	HELITRONY1D	Helitron	RC	434	short	756	high	3003294	chromoarm	102	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	10588319	10588433	AT3TE44020	.	+	VANDAL16	MuDR	DNA	114	short	42	low	3001324	chromoarm	607	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	10588586	10588761	AT3TE44025	.	+	ATMU5	MuDR	DNA	175	short	24	low	3000996	chromoarm	634	no-CHH	no-CHH	.	.	.	.	.
Chr3	10588761	10588807	AT3TE44030	.	+	ATMU5	MuDR	DNA	46	tiny	24	low	3000950	chromoarm	588	no-CHH	no-RdDM	.	.	.	.	.
Chr3	10600839	10601726	AT3TE44080	.	+	HELITRONY3	Helitron	RC	887	short	1399	high	2988031	chromoarm	2064	no-CHH	no-CHH	.	.	.	.	.
Chr3	10601726	10602965	AT3TE44085	.	-	HELITRONY1E	Helitron	RC	1239	short	447	high	2986792	chromoarm	2951	no-CHH	no-CHH	.	.	.	.	.
Chr3	10602965	10603147	AT3TE44090	.	+	BRODYAGA1A	MuDR	DNA	182	short	586	high	2986610	chromoarm	4190	no-CHH	no-CHH	.	.	.	.	.
Chr3	10605137	10605551	AT3TE44095	.	-	ATLINEIII	L1	LINE	414	short	196	medium	2984206	chromoarm	5519	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	10607881	10608046	AT3TE44100	.	-	DT1	Mariner	DNA	165	short	123	medium	2981711	chromoarm	3024	no-CHH	no-CHH	.	.	.	.	.
Chr3	10615591	10616081	AT3TE44130	.	+	ATREP10A	Helitron	RC	490	short	279	high	2973676	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	10619309	10619907	AT3TE44140	.	+	HELITRONY1B	Helitron	RC	598	short	414	high	2969850	chromoarm	719	no-CHH	no-CHH	.	.	.	.	.
Chr3	10635156	10638608	AT3TE44210	.	-	ATHAT7	HAT	DNA	3452	medium	20	low	2951149	chromoarm	1189	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	10638608	10638732	AT3TE44215	.	+	HELITRONY1E	Helitron	RC	124	short	447	high	2951025	chromoarm	1419	no-CHH	no-CHH	.	.	.	.	.
Chr3	10638732	10639949	AT3TE44220	.	-	ATREP10D	Helitron	RC	1217	short	1295	high	2949808	chromoarm	202	no-CHH	no-CHH	.	.	.	.	.
Chr3	10639949	10640140	AT3TE44225	.	+	HELITRONY1E	Helitron	RC	191	short	447	high	2949617	chromoarm	11	no-CHH	no-CHH	.	.	.	.	.
Chr3	10642086	10642242	AT3TE44230	.	-	ATREP10D	Helitron	RC	156	short	1295	high	2947515	chromoarm	15	no-CHH	no-CHH	.	.	.	.	.
Chr3	10642242	10643790	AT3TE44235	.	-	ATREP10B	Helitron	RC	1548	short	491	high	2945967	chromoarm	171	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10643824	10644992	AT3TE44240	.	-	ATLINE1A	L1	LINE	1168	short	289	high	2944765	chromoarm	1753	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	10644992	10646188	AT3TE44245	.	+	ATLINE1A	L1	LINE	1196	short	289	high	2943569	chromoarm	934	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10646188	10646757	AT3TE44250	.	+	HELITRONY1D	Helitron	RC	569	short	756	high	2943000	chromoarm	365	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	10652263	10652394	AT3TE44270	.	+	RathE2_cons	.	RathE2_cons	131	short	74	medium	2937363	chromoarm	723	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10653401	10653562	AT3TE44275	.	-	RathE1_cons	.	RathE1_cons	161	short	213	high	2936195	chromoarm	1111	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10663110	10663341	AT3TE44310	.	-	VANDAL1	MuDR	DNA	231	short	80	medium	2926416	chromoarm	706	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	10663778	10663835	AT3TE44315	.	+	VANDAL16	MuDR	DNA	57	tiny	42	low	2925922	chromoarm	1186	no-CHH	no-CHH	.	.	.	.	.
Chr3	10665570	10666123	AT3TE44320	.	+	HELITRON2	Helitron	RC	553	short	194	medium	2923634	chromoarm	420	no-CHH	no-CHH	.	.	.	.	.
Chr3	10666363	10666944	AT3TE44325	.	+	ATLINE1A	L1	LINE	581	short	289	high	2922813	chromoarm	414	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10678585	10679032	AT3TE44370	.	-	ATHATN4	HAT	DNA	447	short	56	medium	2910725	chromoarm	117	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	10680636	10681048	AT3TE44375	.	-	ATREP1	Helitron	RC	412	short	498	high	2908709	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	10681048	10682033	AT3TE44380	.	-	ATREP2A	Helitron	RC	985	short	116	medium	2907724	chromoarm	170	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	10683728	10683751	AT3TE44385	.	+	ATREP5	Helitron	RC	23	tiny	624	high	2906006	chromoarm	1177	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	10687033	10687244	AT3TE44395	.	-	VANDAL21	MuDR	DNA	211	short	64	medium	2902513	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	10687245	10687413	AT3TE44400	.	-	HELITRONY1B	Helitron	RC	168	short	414	high	2902344	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	10687413	10688186	AT3TE44405	.	-	ATREP11	Helitron	RC	773	short	841	high	2901571	chromoarm	136	no-CHH	no-CHH	.	.	.	.	.
Chr3	10690181	10690252	AT3TE44410	.	+	ATCOPIA42	Copia	LTR	71	tiny	35	low	2899505	chromoarm	384	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	10692098	10692546	AT3TE44415	.	-	SIMPLEHAT2	HAT	DNA	448	short	73	medium	2897211	chromoarm	1384	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10696249	10696292	AT3TE44425	.	-	ATREP10D	Helitron	RC	43	tiny	1295	high	2893465	chromoarm	273	no-CHH	RDR6-RdDM	.	.	.	.	.
Chr3	10696292	10696373	AT3TE44430	.	-	ATREP4	Helitron	RC	81	tiny	832	high	2893384	chromoarm	316	no-CHH	no-CHH	.	.	.	.	.
Chr3	10696373	10697928	AT3TE44435	.	+	ATREP3	Helitron	RC	1555	short	1439	high	2891829	chromoarm	397	no-CHH	no-CHH	.	.	.	.	.
Chr3	10697928	10698119	AT3TE44440	.	+	ATREP15	Helitron	RC	191	short	1003	high	2891638	chromoarm	1952	no-CHH	no-CHH	.	.	.	.	.
Chr3	10698119	10698143	AT3TE44445	.	+	ATREP15	Helitron	RC	24	tiny	1003	high	2891614	chromoarm	2143	no-CHH	no-CHH	.	.	.	.	.
Chr3	10704715	10704962	AT3TE44470	.	+	ATHATN2	HAT	DNA	247	short	46	low	2884795	chromoarm	786	no-RdDM	no-CHH	.	.	.	.	.
Chr3	10708534	10708626	AT3TE44480	.	+	ATREP1	Helitron	RC	92	tiny	498	high	2881131	chromoarm	158	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10708626	10708721	AT3TE44485	.	+	ATREP2	Helitron	RC	95	tiny	164	medium	2881036	chromoarm	250	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	10708721	10709398	AT3TE44490	.	+	ATREP2	Helitron	RC	677	short	164	medium	2880359	chromoarm	345	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10709398	10709515	AT3TE44495	.	+	ATREP3	Helitron	RC	117	short	1439	high	2880242	chromoarm	1018	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	10709515	10709559	AT3TE44500	.	+	ATREP11A	Helitron	RC	44	tiny	95	medium	2880198	chromoarm	974	no-CHH	no-CHH	.	.	.	.	.
Chr3	10716962	10717265	AT3TE44530	.	-	ATENSPM5	En-Spm	DNA	303	short	111	medium	2872492	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	10717715	10717784	AT3TE44535	.	-	ATREP2	Helitron	RC	69	tiny	164	medium	2871973	chromoarm	477	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	10717784	10718343	AT3TE44540	.	-	ATREP2	Helitron	RC	559	short	164	medium	2871414	chromoarm	0	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	10718344	10718404	AT3TE44545	.	-	ATREP14	Helitron	RC	61	tiny	47	low	2871353	chromoarm	0	.	.	LowExpressed	.	.	.	.
Chr3	10721719	10722252	AT3TE44555	.	+	HELITRONY2	Helitron	RC	533	short	198	medium	2867505	chromoarm	184	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	10724415	10724679	AT3TE44560	.	-	ATTIRTA1	Tc1	DNA	264	short	95	medium	2865078	chromoarm	310	no-CHH	no-CHH	.	.	.	.	.
Chr3	10733043	10733189	AT3TE44600	.	-	ATREP4	Helitron	RC	146	short	832	high	2856568	chromoarm	11	no-CHH	no-CHH	.	.	.	.	.
Chr3	10733189	10733701	AT3TE44605	.	+	TNAT1A	.	DNA	512	short	162	medium	2856056	chromoarm	157	no-CHH	no-CHH	.	.	.	.	.
Chr3	10733701	10733750	AT3TE44610	.	+	TNAT1A	.	DNA	49	tiny	162	medium	2856007	chromoarm	669	no-CHH	no-CHH	.	.	.	.	.
Chr3	10737761	10738131	AT3TE44620	.	+	ATGP3	Gypsy	LTR	370	short	60	medium	2851626	chromoarm	35	no-CHH	no-CHH	.	.	.	.	.
Chr3	10741061	10742116	AT3TE44630	.	+	ATREP10D	Helitron	RC	1055	short	1295	high	2847641	chromoarm	147	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	10742116	10742144	AT3TE44635	.	-	ATREP3	Helitron	RC	28	tiny	1439	high	2847613	chromoarm	1202	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	10742374	10742494	AT3TE44640	.	+	ATREP10C	Helitron	RC	120	short	123	medium	2847263	chromoarm	1460	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	10742494	10742524	AT3TE44645	.	+	ATREP4	Helitron	RC	30	tiny	832	high	2847233	chromoarm	1580	no-CHH	no-CHH	.	.	.	.	.
Chr3	10742524	10743777	AT3TE44650	.	+	ATREP15	Helitron	RC	1253	short	1003	high	2845980	chromoarm	405	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	10743778	10743832	AT3TE44655	.	+	ATREP4	Helitron	RC	54	tiny	832	high	2845925	chromoarm	350	no-CHH	no-CHH	.	.	.	.	.
Chr3	10749685	10750570	AT3TE44680	.	+	ATREP10D	Helitron	RC	885	short	1295	high	2839187	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	10750570	10750622	AT3TE44685	.	+	ATDNA2T9C	MuDR	DNA	52	tiny	242	high	2839135	chromoarm	837	no-CHH	no-CHH	.	.	.	.	.
Chr3	10750622	10750658	AT3TE44690	.	+	ARNOLDY2	MuDR	DNA	36	tiny	288	high	2839099	chromoarm	889	no-CHH	no-CHH	.	.	.	.	.
Chr3	10751088	10752363	AT3TE44695	.	-	ATREP12	Helitron	RC	1275	short	22	low	2837394	chromoarm	1355	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	10752504	10752982	AT3TE44700	.	-	ATREP11	Helitron	RC	478	short	841	high	2836775	chromoarm	2498	no-CHH	no-CHH	.	.	.	.	.
Chr3	10754062	10754109	AT3TE44705	.	-	ATREP15	Helitron	RC	47	tiny	1003	high	2835648	chromoarm	1371	no-CHH	no-CHH	.	.	.	.	.
Chr3	10754109	10754938	AT3TE44710	.	+	ATREP15	Helitron	RC	829	short	1003	high	2834819	chromoarm	542	no-CHH	no-CHH	.	.	.	.	.
Chr3	10757768	10758658	AT3TE44720	.	-	ATREP2A	Helitron	RC	890	short	116	medium	2831099	chromoarm	274	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	10757826	10757950	AT3TE44725	.	-	ATREP1	Helitron	RC	124	short	498	high	2831807	chromoarm	332	no-CHH	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	10757950	10758585	AT3TE44730	.	-	ATREP2	Helitron	RC	635	short	164	medium	2831172	chromoarm	456	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10762263	10762396	AT3TE44740	.	-	HELITRONY1D	Helitron	RC	133	short	756	high	2827361	chromoarm	429	no-CHH	no-CHH	.	.	.	.	.
Chr3	10762396	10762479	AT3TE44745	.	-	ATREP15	Helitron	RC	83	tiny	1003	high	2827278	chromoarm	562	no-RdDM	no-CHH	.	.	.	.	.
Chr3	10762479	10763043	AT3TE44750	.	+	BRODYAGA2	MuDR	DNA	564	short	525	high	2826714	chromoarm	645	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	10763044	10764367	AT3TE44755	.	+	BRODYAGA2	MuDR	DNA	1323	short	525	high	2825390	chromoarm	1210	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	10764367	10764422	AT3TE44760	.	+	ARNOLDY1	MuDR	DNA	55	tiny	237	high	2825335	chromoarm	2533	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	10764422	10766124	AT3TE44765	.	+	ARNOLDY1	MuDR	DNA	1702	short	237	high	2823633	chromoarm	2588	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10766124	10766153	AT3TE44770	.	-	ARNOLD3	MuDR	DNA	29	tiny	45	low	2823604	chromoarm	4290	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	10766261	10766308	AT3TE44775	.	-	ATREP11	Helitron	RC	47	tiny	841	high	2823449	chromoarm	4427	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	10766308	10767318	AT3TE44780	.	+	ATREP11	Helitron	RC	1010	short	841	high	2822439	chromoarm	4474	no-CHH	no-CHH	.	.	.	.	.
Chr3	10767318	10767363	AT3TE44785	.	+	HELITRONY3	Helitron	RC	45	tiny	1399	high	2822394	chromoarm	5484	no-CHH	no-CHH	.	.	.	.	.
Chr3	10767985	10772559	AT3TE44790	.	-	TA11	L1	LINE	4574	medium	157	medium	2817198	chromoarm	584	no-CHH	no-CHH	.	.	.	.	.
Chr3	10772559	10772580	AT3TE44795	.	-	TA11	L1	LINE	21	tiny	157	medium	2817177	chromoarm	563	no-CHH	no-CHH	.	.	.	.	.
Chr3	10775806	10775849	AT3TE44805	.	+	HELITRONY3	Helitron	RC	43	tiny	1399	high	2813908	chromoarm	212	no-CHH	no-CHH	.	.	.	.	.
Chr3	10775849	10777173	AT3TE44810	.	+	ATREP10D	Helitron	RC	1324	short	1295	high	2812584	chromoarm	255	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10777173	10777349	AT3TE44815	.	-	HELITRONY1D	Helitron	RC	176	short	756	high	2812408	chromoarm	675	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	10777349	10777407	AT3TE44820	.	+	ATHILA7	Gypsy	LTR	58	tiny	134	medium	2812350	chromoarm	617	PolIV-and-RDR6-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	10780820	10780854	AT3TE44830	.	-	BRODYAGA1A	MuDR	DNA	34	tiny	586	high	2808903	chromoarm	470	no-CHH	no-CHH	.	.	.	.	.
Chr3	10780854	10781169	AT3TE44835	.	-	ATREP5	Helitron	RC	315	short	624	high	2808588	chromoarm	504	no-CHH	no-CHH	.	.	.	.	.
Chr3	10795788	10795946	AT3TE44890	.	-	HELITRONY1D	Helitron	RC	158	short	756	high	2793811	chromoarm	484	no-CHH	no-CHH	.	.	.	.	.
Chr3	10795946	10796693	AT3TE44895	.	+	BRODYAGA2	MuDR	DNA	747	short	525	high	2793064	chromoarm	22	no-CHH	no-CHH	.	.	.	.	.
Chr3	10797574	10798175	AT3TE44900	.	-	VANDAL17	MuDR	DNA	601	short	178	medium	2791582	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	10801636	10801662	AT3TE44910	.	-	ATENSPM5	En-Spm	DNA	26	tiny	111	medium	2788095	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	10801662	10802188	AT3TE44915	.	-	VANDAL17	MuDR	DNA	526	short	178	medium	2787569	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	10804004	10804141	AT3TE44920	.	+	ATREP4	Helitron	RC	137	short	832	high	2785616	chromoarm	767	no-CHH	no-CHH	.	.	.	.	.
Chr3	10804141	10804536	AT3TE44925	.	+	ATREP9	Helitron	RC	395	short	201	high	2785221	chromoarm	904	no-CHH	no-CHH	.	.	.	.	.
Chr3	10807236	10807433	AT3TE44935	.	+	VANDAL1	MuDR	DNA	197	short	80	medium	2782324	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	10809499	10809805	AT3TE44940	.	-	BRODYAGA1A	MuDR	DNA	306	short	586	high	2779952	chromoarm	1130	no-CHH	no-CHH	.	.	.	.	.
Chr3	10809928	10810294	AT3TE44945	.	-	VANDAL8	MuDR	DNA	366	short	123	medium	2779463	chromoarm	1559	no-RdDM	no-CHH	.	.	.	.	.
Chr3	10810401	10812267	AT3TE44950	.	-	VANDAL6	MuDR	DNA	1866	short	89	medium	2777490	chromoarm	1309	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	10811477,10812936	10810579,10812007	-,-	transcript_id-"13ce4795-a02f-4a3b-b798-8ddaa354fd1f|12",transcript_id-"df724be1-ed2d-4597-a1dd-2178399a68af|10"
Chr3	10812268	10813118	AT3TE44955	.	-	VANDAL8	MuDR	DNA	850	short	123	medium	2776639	chromoarm	458	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	10812936	10812007	-	transcript_id-"df724be1-ed2d-4597-a1dd-2178399a68af|10"
Chr3	10816140	10818849	AT3TE44965	.	-	VANDAL2N1	MuDR	DNA	2709	medium	51	medium	2770908	chromoarm	552	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	10816283	10816509	+	transcript_id-"bba92b81-3ab0-43f9-add2-b81597fb2689|3"
Chr3	10818849	10818889	AT3TE44970	.	+	ATREP5	Helitron	RC	40	tiny	624	high	2770868	chromoarm	3261	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	10818889	10821523	AT3TE44975	.	-	ATREP3	Helitron	RC	2634	medium	1439	high	2768234	chromoarm	947	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10821524	10821711	AT3TE44980	.	+	HELITRONY1D	Helitron	RC	187	short	756	high	2768046	chromoarm	759	no-CHH	no-CHH	.	.	.	.	.
Chr3	10821838	10822011	AT3TE44985	.	-	RathE1_cons	.	RathE1_cons	174	short	213	high	2767746	chromoarm	459	.	.	.	.	.	.	.
Chr3	10824321	10824557	AT3TE44990	.	+	ATLINEIII	L1	LINE	236	short	196	medium	2765200	chromoarm	380	no-CHH	no-RdDM	.	.	.	.	.
Chr3	10825144	10825769	AT3TE44995	.	+	ATREP13	Helitron	RC	626	short	106	medium	2763988	chromoarm	1202	.	.	.	.	.	.	.
Chr3	10826856	10827076	AT3TE45000	.	-	ATENSPM3	En-Spm	DNA	220	short	98	medium	2762681	chromoarm	637	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	10833395	10833515	AT3TE45030	.	-	ATMUNX1	MuDR	DNA	120	short	155	medium	2756242	chromoarm	375	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	10834589	10834680	AT3TE45035	.	-	VANDAL14	MuDR	DNA	92	tiny	25	low	2755077	chromoarm	1568	.	.	.	.	.	.	.
Chr3	10835103	10835547	AT3TE45040	.	-	HELITRONY3	Helitron	RC	444	short	1399	high	2754210	chromoarm	2083	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10835547	10838139	AT3TE45045	.	+	ATREP15	Helitron	RC	2592	medium	1003	high	2751618	chromoarm	329	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	10838139	10838453	AT3TE45050	.	+	ATREP4	Helitron	RC	314	short	832	high	2751304	chromoarm	15	no-CHH	no-CHH	.	.	.	.	.
Chr3	10840399	10840579	AT3TE45055	.	+	RathE1_cons	.	RathE1_cons	180	short	213	high	2749178	chromoarm	665	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	10841357	10841403	AT3TE45060	.	-	ATREP3	Helitron	RC	46	tiny	1439	high	2748354	chromoarm	1623	no-CHH	no-CHH	.	.	.	.	.
Chr3	10841403	10841460	AT3TE45065	.	+	ATREP10A	Helitron	RC	57	tiny	279	high	2748297	chromoarm	1669	no-CHH	no-CHH	.	.	.	.	.
Chr3	10841460	10841550	AT3TE45070	.	+	ATREP10B	Helitron	RC	90	tiny	491	high	2748207	chromoarm	1726	no-CHH	no-CHH	.	.	.	.	.
Chr3	10841550	10841579	AT3TE45075	.	+	ATREP10B	Helitron	RC	29	tiny	491	high	2748178	chromoarm	1816	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10841579	10843618	AT3TE45080	.	+	ATREP10B	Helitron	RC	2039	medium	491	high	2746139	chromoarm	1845	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10843618	10844345	AT3TE45085	.	-	ATREP10D	Helitron	RC	727	short	1295	high	2745412	chromoarm	3884	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	10847597	10847725	AT3TE45095	.	+	ATLINE1A	L1	LINE	129	short	289	high	2742032	chromoarm	943	.	.	.	.	.	.	.
Chr3	10847741	10848147	AT3TE45100	.	+	HELITRONY2	Helitron	RC	406	short	198	medium	2741610	chromoarm	521	no-CHH	no-CHH	.	.	.	.	.
Chr3	10850259	10850566	AT3TE45105	.	-	ATHATN1	HAT	DNA	307	short	69	medium	2739191	chromoarm	304	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10850902	10851733	AT3TE45110	.	+	ATREP5	Helitron	RC	831	short	624	high	2738024	chromoarm	947	no-CHH	no-CHH	.	.	.	.	.
Chr3	10851733	10852585	AT3TE45115	.	+	ATREP15	Helitron	RC	852	short	1003	high	2737172	chromoarm	1778	no-CHH	no-CHH	.	.	.	.	.
Chr3	10853840	10854553	AT3TE45120	.	-	ATLINE1A	L1	LINE	713	short	289	high	2735204	chromoarm	1227	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	10854555	10855181	AT3TE45125	.	+	BRODYAGA1A	MuDR	DNA	626	short	586	high	2734576	chromoarm	599	no-CHH	no-CHH	.	.	.	.	.
Chr3	10860161	10860236	AT3TE45140	.	-	ATHATN4	HAT	DNA	75	tiny	56	medium	2729521	chromoarm	3848	no-CHH	no-CHH	.	.	.	.	.
Chr3	10860237	10860747	AT3TE45145	.	-	BRODYAGA1	MuDR	DNA	511	short	251	high	2729010	chromoarm	3923	.	.	.	.	.	.	.
Chr3	10861590	10861867	AT3TE45150	.	+	TSCL	.	LINE?	278	short	81	medium	2727890	chromoarm	5276	.	.	.	.	.	.	.
Chr3	10862002	10862064	AT3TE45155	.	-	ATREP3	Helitron	RC	62	tiny	1439	high	2727693	chromoarm	5689	no-CHH	no-CHH	.	.	.	.	.
Chr3	10862064	10862930	AT3TE45160	.	-	ATREP3	Helitron	RC	866	short	1439	high	2726827	chromoarm	5751	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10862930	10862967	AT3TE45165	.	+	ATREP11	Helitron	RC	37	tiny	841	high	2726790	chromoarm	6617	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	10862967	10863590	AT3TE45170	.	-	ATHATN7	HAT	DNA	623	short	71	medium	2726167	chromoarm	6654	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	10863590	10863667	AT3TE45175	.	+	ARNOLDY2	MuDR	DNA	77	tiny	288	high	2726090	chromoarm	6619	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10863667	10865704	AT3TE45180	.	+	ARNOLDY1	MuDR	DNA	2037	medium	237	high	2724053	chromoarm	4582	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10865704	10866018	AT3TE45185	.	-	HELITRONY3	Helitron	RC	314	short	1399	high	2723739	chromoarm	4268	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10869126	10869278	AT3TE45195	.	-	ATCOPIA13	Copia	LTR	152	short	35	low	2720479	chromoarm	1008	no-CHH	no-CHH	.	.	.	.	.
Chr3	10869742	10869890	AT3TE45200	.	+	RathE2_cons	.	RathE2_cons	149	short	74	medium	2719867	chromoarm	396	.	.	.	.	.	.	.
Chr3	10876349	10876509	AT3TE45230	.	+	ATLINE1A	L1	LINE	160	short	289	high	2713248	chromoarm	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	10877606	10878512	AT3TE45235	.	+	HELITRONY3	Helitron	RC	906	short	1399	high	2711245	chromoarm	320	no-CHH	no-CHH	.	.	.	.	.
Chr3	10880057	10880557	AT3TE45240	.	-	ATLINE1_3A	L1	LINE	500	short	160	medium	2709200	chromoarm	2771	no-CHH	no-CHH	.	.	.	.	.
Chr3	10883375	10884081	AT3TE45250	.	+	ATREP15	Helitron	RC	706	short	1003	high	2705676	chromoarm	6089	no-CHH	no-CHH	.	.	.	.	.
Chr3	10884565	10884907	AT3TE45255	.	-	ATLINE2	L1	LINE	342	short	138	medium	2704850	chromoarm	5447	no-RdDM	no-RdDM	ExpressedAndAnnotated	10885127	10884704	-	transcript_id-"9ef150b4-3751-47ff-b0d4-2c39f187acb4|14"
Chr3	10885295	10885588	AT3TE45260	.	-	ATLINEIII	L1	LINE	293	short	196	medium	2704169	chromoarm	4766	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	10889154	10889410	AT3TE45270	.	-	ATLINE1_3A	L1	LINE	256	short	160	medium	2700347	chromoarm	944	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	10891815	10891854	AT3TE45280	.	+	ATHATN1	HAT	DNA	39	tiny	69	medium	2697903	chromoarm	0	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	10891854	10892253	AT3TE45285	.	+	ATHATN1	HAT	DNA	399	short	69	medium	2697504	chromoarm	15	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr3	10892253	10892390	AT3TE45290	.	-	ATREP10A	Helitron	RC	137	short	279	high	2697367	chromoarm	44	no-CHH	no-CHH	.	.	.	.	.
Chr3	10896363	10896445	AT3TE45300	.	-	ATCOPIA6	Copia	LTR	82	tiny	8	low	2693312	chromoarm	260	no-CHH	no-CHH	.	.	.	.	.
Chr3	10899811	10900757	AT3TE45310	.	-	ATREP10B	Helitron	RC	946	short	491	high	2689000	chromoarm	970	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	10900762	10900794	AT3TE45315	.	+	ATREP1	Helitron	RC	32	tiny	498	high	2688963	chromoarm	1532	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	10900794	10900842	AT3TE45320	.	+	ATREP1	Helitron	RC	48	tiny	498	high	2688915	chromoarm	1484	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr3	10900842	10902022	AT3TE45325	.	+	ATREP1	Helitron	RC	1180	short	498	high	2687735	chromoarm	304	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	10902527	10902659	AT3TE45330	.	+	ATSINE2A	.	SINE	132	short	33	low	2687098	chromoarm	12	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	10905182	10905318	AT3TE45340	.	-	ATREP3	Helitron	RC	136	short	1439	high	2684439	chromoarm	767	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	10905318	10906339	AT3TE45345	.	+	ATREP11	Helitron	RC	1021	short	841	high	2683418	chromoarm	903	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10906339	10906395	AT3TE45350	.	+	ATREP11	Helitron	RC	56	tiny	841	high	2683362	chromoarm	1924	no-CHH	no-CHH	.	.	.	.	.
Chr3	10908038	10908450	AT3TE45355	.	-	HELITRON4	Helitron	RC	412	short	199	medium	2681307	chromoarm	2992	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10913920	10914304	AT3TE45370	.	-	ATREP3	Helitron	RC	384	short	1439	high	2675453	chromoarm	1064	no-CHH	no-CHH	.	.	.	.	.
Chr3	10916000	10916022	AT3TE45375	.	+	VANDAL17	MuDR	DNA	22	tiny	178	medium	2673735	chromoarm	3144	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	10916022	10917167	AT3TE45380	.	+	ATREP3	Helitron	RC	1145	short	1439	high	2672590	chromoarm	3166	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	10917703	10922777	AT3TE45385	.	-	ATLINE1_6	L1	LINE	5074	long	129	medium	2666980	chromoarm	2236	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	10922576	10923204	+	transcript_id-"0d10da60-2787-4d24-8fc6-6e30c3f6ead0|9"
Chr3	10922913	10923082	AT3TE45390	.	-	ATLINE1_4	L1	LINE	169	short	102	medium	2666675	chromoarm	1931	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	10926909	10927058	AT3TE45400	.	+	ATREP10B	Helitron	RC	149	short	491	high	2662699	chromoarm	1593	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	10927158	10927522	AT3TE45405	.	+	ATSINE2A	.	SINE	364	short	33	low	2662235	chromoarm	1842	no-CHH	no-CHH	.	.	.	.	.
Chr3	10927616	10927669	AT3TE45410	.	+	ATCOPIA65	Copia	LTR	53	tiny	34	low	2662088	chromoarm	2300	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10928288	10929021	AT3TE45415	.	-	TA11	L1	LINE	733	short	157	medium	2660736	chromoarm	2972	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	10929021	10929087	AT3TE45420	.	-	TA11	L1	LINE	66	tiny	157	medium	2660670	chromoarm	3705	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	10929561	10929735	AT3TE45425	.	+	RathE1_cons	.	RathE1_cons	174	short	213	high	2660022	chromoarm	3230	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	10930887	10932595	AT3TE45430	.	+	ATGP10	Gypsy	LTR	1708	short	165	medium	2657162	chromoarm	370	no-RdDM	no-RdDM	ExpressedAndAnnotated	10930144,10931351,10931378	10932367,10932360,10931588	+,+,+	transcript_id-"4bd46bbf-8faf-46f8-99a5-2cd078a126a5|8",transcript_id-"afd7c6c2-3541-453a-807a-4d814ac9c160|5",transcript_id-"a6d76691-186a-4362-803c-b8fd95eedba9|7"
Chr3	10933271	10933328	AT3TE45435	.	-	ATREP15	Helitron	RC	57	tiny	1003	high	2656429	chromoarm	213	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	10933328	10933495	AT3TE45440	.	-	HELITRONY1B	Helitron	RC	167	short	414	high	2656262	chromoarm	270	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	10933496	10934173	AT3TE45445	.	-	ATREP5	Helitron	RC	678	short	624	high	2655584	chromoarm	437	.	.	LowExpressed	.	.	.	.
Chr3	10934173	10934312	AT3TE45450	.	-	HELITRONY1A	Helitron	RC	139	short	271	high	2655445	chromoarm	1115	PolIV-and-RDR6-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	10934312	10934411	AT3TE45455	.	+	HELITRONY1E	Helitron	RC	99	tiny	447	high	2655346	chromoarm	1254	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	10935433	10935518	AT3TE45460	.	-	ATMUNX1	MuDR	DNA	85	tiny	155	medium	2654239	chromoarm	2375	no-CHH	no-CHH	.	.	.	.	.
Chr3	10935518	10935990	AT3TE45465	.	+	ATREP2A	Helitron	RC	472	short	116	medium	2653767	chromoarm	2460	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	10935990	10936946	AT3TE45470	.	-	ATREP10A	Helitron	RC	956	short	279	high	2652811	chromoarm	2932	no-CHH	no-CHH	.	.	.	.	.
Chr3	10936946	10937057	AT3TE45475	.	+	ATREP4	Helitron	RC	111	short	832	high	2652700	chromoarm	3540	no-CHH	no-CHH	.	.	.	.	.
Chr3	10937164	10937768	AT3TE45480	.	-	HELITRONY1D	Helitron	RC	604	short	756	high	2651989	chromoarm	2829	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10937768	10937832	AT3TE45485	.	-	ATREP15	Helitron	RC	64	tiny	1003	high	2651925	chromoarm	2765	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	10938647	10939801	AT3TE45490	.	-	ATREP10D	Helitron	RC	1154	short	1295	high	2649956	chromoarm	796	no-CHH	no-CHH	.	.	.	.	.
Chr3	10939801	10939936	AT3TE45495	.	+	HELITRONY1E	Helitron	RC	135	short	447	high	2649821	chromoarm	661	no-CHH	no-CHH	.	.	.	.	.
Chr3	10941718	10942433	AT3TE45500	.	-	ATREP1	Helitron	RC	715	short	498	high	2647324	chromoarm	182	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	10942433	10942461	AT3TE45505	.	-	ATREP1	Helitron	RC	28	tiny	498	high	2647296	chromoarm	897	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	10943819	10943854	AT3TE45510	.	-	ATREP9	Helitron	RC	35	tiny	201	high	2645903	chromoarm	2283	no-CHH	no-RdDM	.	.	.	.	.
Chr3	10943854	10946188	AT3TE45515	.	-	ATREP10D	Helitron	RC	2334	medium	1295	high	2643569	chromoarm	2318	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	10946189	10946214	AT3TE45520	.	+	ATREP10D	Helitron	RC	26	tiny	1295	high	2643543	chromoarm	4652	.	.	.	.	.	.	.
Chr3	10946430	10947167	AT3TE45525	.	+	TNAT2A	.	DNA	738	short	38	low	2642590	chromoarm	4893	.	.	.	.	.	.	.
Chr3	10947167	10947201	AT3TE45530	.	-	ARNOLDY1	MuDR	DNA	34	tiny	237	high	2642556	chromoarm	5631	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10947201	10949375	AT3TE45535	.	+	HELITRONY3	Helitron	RC	2174	medium	1399	high	2640382	chromoarm	5665	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10949375	10949449	AT3TE45540	.	+	ATREP4	Helitron	RC	74	tiny	832	high	2640308	chromoarm	7839	no-CHH	no-CHH	.	.	.	.	.
Chr3	10953343	10953862	AT3TE45550	.	-	ATHATN5	HAT	DNA	519	short	42	low	2635895	chromoarm	4024	DCL3-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	10955053	10955254	AT3TE45555	.	+	RathE1_cons	.	RathE1_cons	201	short	213	high	2634503	chromoarm	2632	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	10955534	10955701	AT3TE45560	.	+	HELITRONY3	Helitron	RC	167	short	1399	high	2634056	chromoarm	2185	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	10956641	10956667	AT3TE45565	.	-	ARNOLDY1	MuDR	DNA	26	tiny	237	high	2633090	chromoarm	1219	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	10956667	10957654	AT3TE45570	.	+	ARNOLDY2	MuDR	DNA	987	short	288	high	2632103	chromoarm	232	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	10957654	10957679	AT3TE45575	.	+	ARNOLDY1	MuDR	DNA	25	tiny	237	high	2632078	chromoarm	207	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	10958670	10958816	AT3TE45580	.	+	RathE1_cons	.	RathE1_cons	146	short	213	high	2630941	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	10961407	10961549	AT3TE45590	.	+	ATLINE2	L1	LINE	142	short	138	medium	2628208	chromoarm	679	no-CHH	no-CHH	.	.	.	.	.
Chr3	10961549	10961880	AT3TE45595	.	+	ATLINEIII	L1	LINE	331	short	196	medium	2627877	chromoarm	821	no-CHH	no-CHH	.	.	.	.	.
Chr3	10967727	10968059	AT3TE45610	.	+	VANDAL13	MuDR	DNA	332	short	38	low	2621698	chromoarm	264	no-CHH	no-CHH	.	.	.	.	.
Chr3	10969413	10970093	AT3TE45615	.	-	ATREP5	Helitron	RC	680	short	624	high	2619664	chromoarm	102	no-CHH	no-CHH	.	.	.	.	.
Chr3	10970101	10976062	AT3TE45620	.	-	TA11	L1	LINE	5961	long	157	medium	2613695	chromoarm	296	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	10977588	10977978	AT3TE45625	.	-	HELITRONY2	Helitron	RC	390	short	198	medium	2611779	chromoarm	218	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10977978	10980184	AT3TE45630	.	-	HELITRON2	Helitron	RC	2206	medium	194	medium	2609573	chromoarm	604	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	10979197,10979197	10978043,10978132	-,-	transcript_id-"b10ea99c-f228-4ad8-b6db-92c96381a727|8",transcript_id-"aa31bacf-4216-4784-82dd-2239cf963643|6"
Chr3	10980464	10980620	AT3TE45635	.	-	TAG2	HAT	DNA	156	short	86	medium	2609137	chromoarm	168	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	10980648	10980804	AT3TE45640	.	+	SIMPLEGUY1	Harbinger	DNA	156	short	116	medium	2608953	chromoarm	0	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	10982263	10982475	AT3TE45645	.	+	ATCOPIA11	Copia	LTR	212	short	26	low	2607282	chromoarm	230	no-CHH	no-CHH	.	.	.	.	.
Chr3	10982727	10982936	AT3TE45650	.	-	TAG2	HAT	DNA	209	short	86	medium	2606821	chromoarm	0	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	10984877	10984931	AT3TE45655	.	+	ATLINE1A	L1	LINE	54	tiny	289	high	2604826	chromoarm	0	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	10990979	10991051	AT3TE45680	.	+	BRODYAGA2	MuDR	DNA	72	tiny	525	high	2598706	chromoarm	1197	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10991051	10991733	AT3TE45685	.	-	BRODYAGA2	MuDR	DNA	682	short	525	high	2598024	chromoarm	1269	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	10991733	10991784	AT3TE45690	.	-	BRODYAGA2	MuDR	DNA	51	tiny	525	high	2597973	chromoarm	1618	RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr3	10996885	10996960	AT3TE45710	.	-	ATREP1	Helitron	RC	75	tiny	498	high	2592797	chromoarm	1960	no-CHH	no-CHH	.	.	.	.	.
Chr3	10996960	10997023	AT3TE45715	.	-	ATREP6	Helitron	RC	63	tiny	181	medium	2592734	chromoarm	2035	no-CHH	no-CHH	.	.	.	.	.
Chr3	10997024	10997812	AT3TE45720	.	-	ATREP7	Helitron	RC	789	short	164	medium	2591945	chromoarm	2098	.	.	.	.	.	.	.
Chr3	10997812	10998636	AT3TE45725	.	-	ATREP9	Helitron	RC	824	short	201	high	2591121	chromoarm	2887	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	10998636	10998931	AT3TE45730	.	-	ATHPOGON1	Pogo	DNA	295	short	174	medium	2590826	chromoarm	3419	no-CHH	no-RdDM	.	.	.	.	.
Chr3	11001240	11001792	AT3TE45735	.	+	BRODYAGA1A	MuDR	DNA	552	short	586	high	2587965	chromoarm	558	no-CHH	no-CHH	.	.	.	.	.
Chr3	11003345	11003831	AT3TE45740	.	-	ATREP10B	Helitron	RC	486	short	491	high	2585926	chromoarm	299	no-CHH	no-CHH	.	.	.	.	.
Chr3	11004625	11004831	AT3TE45745	.	+	ATHATN1	HAT	DNA	206	short	69	medium	2584926	chromoarm	959	no-CHH	no-CHH	.	.	.	.	.
Chr3	11013543	11013615	AT3TE45780	.	-	ATREP6	Helitron	RC	72	tiny	181	medium	2576142	chromoarm	475	no-CHH	no-CHH	.	.	.	.	.
Chr3	11013615	11015565	AT3TE45785	.	-	ATREP10D	Helitron	RC	1950	short	1295	high	2574192	chromoarm	547	no-CHH	no-CHH	.	.	.	.	.
Chr3	11015565	11016018	AT3TE45790	.	-	HELITRONY2	Helitron	RC	453	short	198	medium	2573739	chromoarm	2497	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	11016082	11016110	AT3TE45795	.	+	ATCOPIA84	Copia	LTR	28	tiny	10	low	2573647	chromoarm	3014	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	11016110	11020804	AT3TE45800	.	+	ATCOPIA5	Copia	LTR	4694	medium	16	low	2568953	chromoarm	3042	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	11020804	11020843	AT3TE45805	.	+	ATCOPIA92	Copia	LTR	39	tiny	8	low	2568914	chromoarm	3163	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	11021714	11022665	AT3TE45810	.	+	BOMZH1	MuDR	DNA	951	short	28	low	2567092	chromoarm	1341	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11022997	11023228	AT3TE45815	.	+	ATREP10B	Helitron	RC	231	short	491	high	2566529	chromoarm	778	no-CHH	no-CHH	.	.	.	.	.
Chr3	11023228	11023749	AT3TE45820	.	-	BRODYAGA2	MuDR	DNA	521	short	525	high	2566008	chromoarm	257	no-CHH	no-CHH	.	.	.	.	.
Chr3	11023749	11023774	AT3TE45825	.	-	ATREP11	Helitron	RC	25	tiny	841	high	2565983	chromoarm	232	no-CHH	no-CHH	.	.	.	.	.
Chr3	11023774	11023883	AT3TE45830	.	-	BRODYAGA1A	MuDR	DNA	109	short	586	high	2565874	chromoarm	123	no-CHH	no-CHH	.	.	.	.	.
Chr3	11024092	11024241	AT3TE45835	.	+	TAG1	HAT	DNA	149	short	28	low	2565516	chromoarm	0	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	11025845	11026014	AT3TE45840	.	-	HELITRONY3	Helitron	RC	169	short	1399	high	2563743	chromoarm	956	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	11026014	11026787	AT3TE45845	.	+	BRODYAGA1A	MuDR	DNA	773	short	586	high	2562970	chromoarm	1125	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	11031868	11032284	AT3TE45860	.	-	BRODYAGA1A	MuDR	DNA	416	short	586	high	2557473	chromoarm	1265	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11032388	11032723	AT3TE45865	.	+	ATDNA12T3_2	.	DNA	335	short	660	high	2557034	chromoarm	1115	no-CHH	no-CHH	.	.	.	.	.
Chr3	11041005	11041834	AT3TE45900	.	-	HELITRONY3	Helitron	RC	829	short	1399	high	2547923	chromoarm	304	PolIV-and-RDR6-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	11041834	11041988	AT3TE45905	.	+	ATTIR16T3A	.	DNA	154	short	106	medium	2547769	chromoarm	1133	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	11041988	11042595	AT3TE45910	.	+	ATTIR16T3A	.	DNA	607	short	106	medium	2547162	chromoarm	1287	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	11042595	11042661	AT3TE45915	.	+	ATREP4	Helitron	RC	66	tiny	832	high	2547096	chromoarm	1894	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11042661	11042682	AT3TE45920	.	+	HELITRONY3	Helitron	RC	21	tiny	1399	high	2547075	chromoarm	1960	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11044058	11044575	AT3TE45925	.	+	ATTIR16T3A	.	DNA	517	short	106	medium	2545182	chromoarm	414	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11044575	11044614	AT3TE45930	.	+	HELITRONY3	Helitron	RC	39	tiny	1399	high	2545143	chromoarm	375	no-CHH	no-CHH	.	.	.	.	.
Chr3	11048763	11048884	AT3TE45940	.	-	ATLINE1A	L1	LINE	121	short	289	high	2540873	chromoarm	298	no-CHH	no-CHH	.	.	.	.	.
Chr3	11049545	11049906	AT3TE45945	.	+	ATMUNX1	MuDR	DNA	361	short	155	medium	2539851	chromoarm	286	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11051648	11052111	AT3TE45950	.	+	VANDAL17	MuDR	DNA	463	short	178	medium	2537646	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	11052111	11052134	AT3TE45955	.	-	ATMU10	MuDR	DNA	23	tiny	87	medium	2537623	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	11053115	11053400	AT3TE45960	.	+	HELITRON2	Helitron	RC	285	short	194	medium	2536357	chromoarm	486	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	11053634	11054122	AT3TE45965	.	+	LIMPET1	MuDR	DNA	488	short	116	medium	2535635	chromoarm	1005	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	11054128	11054934	AT3TE45970	.	-	ARNOLDY1	MuDR	DNA	806	short	237	high	2534823	chromoarm	1499	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	11054934	11055895	AT3TE45975	.	+	ATGP1	Gypsy	LTR	961	short	144	medium	2533862	chromoarm	2305	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	11055065,11055065,11055065,11055065	11055896,11055901,11055905,11055976	+,+,+,+	transcript_id-"aa874b94-54f7-4be8-a6ef-db4ddd3d8a9d|127",transcript_id-"52c35b7c-d583-4283-a382-e5a5344ba93b|34",transcript_id-"05520ac5-da78-40ae-82d1-bbd1e023f580|46",transcript_id-"96c3e940-b5a8-450e-aa21-d0f6056fad2e|4"
Chr3	11055895	11062842	AT3TE45980	.	-	ATGP1	Gypsy	LTR	6947	long	144	medium	2526915	chromoarm	3266	no-RdDM	no-RdDM	ExpressedAndAnnotated	11057426,11062717,11062717	11056583,11061879,11062140	-,-,-	transcript_id-"c72acc3b-f9f8-4a4a-8f97-5ac3c144f4db|5",transcript_id-"1e8e09bc-4000-42d2-a703-9fa5cb72f415|7",transcript_id-"773a6fce-8ab2-4483-b090-e1e4e2377952|4"
Chr3	11062842	11062905	AT3TE45985	.	+	HELITRONY3	Helitron	RC	63	tiny	1399	high	2526852	chromoarm	6446	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11064859	11065193	AT3TE45990	.	-	BRODYAGA1A	MuDR	DNA	334	short	586	high	2524564	chromoarm	4158	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	11066622	11066660	AT3TE45995	.	-	ATLINE2	L1	LINE	38	tiny	138	medium	2523097	chromoarm	2691	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11066660	11067771	AT3TE46000	.	-	ATLINEIII	L1	LINE	1111	short	196	medium	2521986	chromoarm	1580	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	11071369	11071420	AT3TE46010	.	+	ATREP15	Helitron	RC	51	tiny	1003	high	2518337	chromoarm	0	RDR6-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	11071420	11072816	AT3TE46015	.	+	ATREP4	Helitron	RC	1396	short	832	high	2516941	chromoarm	44	no-CHH	no-CHH	.	.	.	.	.
Chr3	11072816	11072907	AT3TE46020	.	+	ATREP11	Helitron	RC	91	tiny	841	high	2516850	chromoarm	896	no-CHH	no-CHH	.	.	.	.	.
Chr3	11077503	11078239	AT3TE46030	.	+	ATHPOGON3	Pogo	DNA	736	short	118	medium	2511518	chromoarm	922	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	11078239	11078285	AT3TE46035	.	+	ATHPOGON2	Pogo	DNA	46	tiny	27	low	2511472	chromoarm	1658	no-CHH	no-CHH	.	.	.	.	.
Chr3	11078285	11078349	AT3TE46040	.	+	ATREP5	Helitron	RC	64	tiny	624	high	2511408	chromoarm	1704	no-CHH	no-CHH	.	.	.	.	.
Chr3	11078904	11079437	AT3TE46045	.	+	ATLINE1A	L1	LINE	533	short	289	high	2510320	chromoarm	2323	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11079437	11080737	AT3TE46050	.	-	HELITRONY3	Helitron	RC	1300	short	1399	high	2509020	chromoarm	1417	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11080737	11080786	AT3TE46055	.	+	BRODYAGA1	MuDR	DNA	49	tiny	251	high	2508971	chromoarm	1368	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11080786	11081011	AT3TE46060	.	-	HELITRON4	Helitron	RC	225	short	199	medium	2508746	chromoarm	1143	no-CHH	no-CHH	.	.	.	.	.
Chr3	11086281	11086582	AT3TE46080	.	+	TNAT2A	.	DNA	301	short	38	low	2503175	chromoarm	390	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11086582	11087329	AT3TE46085	.	+	TNAT1A	.	DNA	747	short	162	medium	2502428	chromoarm	691	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11087329	11087583	AT3TE46090	.	+	TNAT2A	.	DNA	254	short	38	low	2502174	chromoarm	1438	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11087583	11087902	AT3TE46095	.	+	TNAT2A	.	DNA	319	short	38	low	2501855	chromoarm	1692	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	11087902	11087951	AT3TE46100	.	+	ATREP11	Helitron	RC	49	tiny	841	high	2501806	chromoarm	2011	no-CHH	no-RdDM	.	.	.	.	.
Chr3	11087951	11087974	AT3TE46105	.	+	VANDAL8	MuDR	DNA	23	tiny	123	medium	2501783	chromoarm	2060	no-CHH	no-CHH	.	.	.	.	.
Chr3	11088393	11088742	AT3TE46110	.	-	ATGP9B	Gypsy	LTR	349	short	27	low	2501015	chromoarm	2502	no-CHH	no-CHH	.	.	.	.	.
Chr3	11088991	11090176	AT3TE46115	.	+	ATREP8	Helitron	RC	1185	short	75	medium	2499581	chromoarm	3100	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11090176	11090199	AT3TE46120	.	+	ATREP7	Helitron	RC	23	tiny	164	medium	2499558	chromoarm	4285	no-CHH	no-CHH	.	.	.	.	.
Chr3	11090199	11090406	AT3TE46125	.	-	ATREP3	Helitron	RC	207	short	1439	high	2499351	chromoarm	4308	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	11090406	11091000	AT3TE46130	.	-	ATREP2	Helitron	RC	594	short	164	medium	2498757	chromoarm	4515	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11091000	11091893	AT3TE46135	.	-	ATREP10D	Helitron	RC	893	short	1295	high	2497864	chromoarm	5109	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr3	11091893	11092388	AT3TE46140	.	+	ATREP3	Helitron	RC	495	short	1439	high	2497369	chromoarm	6002	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11092444	11092887	AT3TE46145	.	-	ATDNA2T9C	MuDR	DNA	443	short	242	high	2496870	chromoarm	6553	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	11093216	11093559	AT3TE46150	.	-	ATHPOGON3	Pogo	DNA	343	short	118	medium	2496198	chromoarm	7325	no-CHH	no-CHH	.	.	.	.	.
Chr3	11093559	11094554	AT3TE46155	.	+	ATREP10D	Helitron	RC	995	short	1295	high	2495203	chromoarm	7668	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11095785	11095947	AT3TE46160	.	-	RathE3_cons	.	RathE3_cons	162	short	104	medium	2493810	chromoarm	6598	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11096111	11096264	AT3TE46165	.	-	ATLINEIII	L1	LINE	153	short	196	medium	2493493	chromoarm	6281	no-CHH	no-CHH	.	.	.	.	.
Chr3	11097259	11099626	AT3TE46170	.	+	TAG2	HAT	DNA	2367	medium	86	medium	2490131	chromoarm	2919	PolIV-RdDM	no-RdDM	ExpressedAndAnnotated	11097462,11097462,11097462	11098912,11098912,11099389	+,+,+	transcript_id-"05125652-4ac5-4efa-9df9-667ba5f5efc2|3",transcript_id-"5a28aec2-92a1-48d3-8a3b-d9edc0666937|8",transcript_id-"b2ef94ca-5d90-4dfe-a217-508a21ab6a0a|9"
Chr3	11099818	11100019	AT3TE46175	.	+	VANDAL18NB	MuDR	DNA	201	short	19	low	2489738	chromoarm	2526	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	11100253	11100567	AT3TE46180	.	-	HELITRONY1C	Helitron	RC	314	short	120	medium	2489190	chromoarm	1978	no-CHH	no-RdDM	.	.	.	.	.
Chr3	11100723	11101222	AT3TE46185	.	-	ATLINE1_2	L1	LINE	499	short	41	low	2488535	chromoarm	1323	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	11101234	11101255	AT3TE46190	.	+	ATHILA4A	Gypsy	LTR	21	tiny	310	high	2488502	chromoarm	1290	no-CHH	DCL3-RdDM	.	.	.	.	.
Chr3	11101255	11102041	AT3TE46195	.	+	ATHILA4A	Gypsy	LTR	786	short	310	high	2487716	chromoarm	504	no-CHH	no-RdDM	.	.	.	.	.
Chr3	11107002	11107562	AT3TE46210	.	+	BRODYAGA2	MuDR	DNA	560	short	525	high	2482195	chromoarm	858	no-CHH	no-CHH	.	.	.	.	.
Chr3	11109606	11109705	AT3TE46215	.	-	ATHATN4	HAT	DNA	99	tiny	56	medium	2480052	chromoarm	3462	no-CHH	no-CHH	.	.	.	.	.
Chr3	11110572	11110747	AT3TE46220	.	-	ATREP15	Helitron	RC	175	short	1003	high	2479010	chromoarm	3364	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	11110747	11112346	AT3TE46225	.	+	HELITRONY1A	Helitron	RC	1599	short	271	high	2477411	chromoarm	1765	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	11112346	11112456	AT3TE46230	.	+	HELITRONY1C	Helitron	RC	110	short	120	medium	2477301	chromoarm	1655	PolIV-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	11114479	11115218	AT3TE46235	.	-	ATREP11	Helitron	RC	739	short	841	high	2474539	chromoarm	53	no-CHH	no-CHH	.	.	.	.	.
Chr3	11115385	11115527	AT3TE46240	.	-	RathE1_cons	.	RathE1_cons	143	short	213	high	2474230	chromoarm	958	.	.	.	.	.	.	.
Chr3	11116001	11120737	AT3TE46245	.	-	ATCOPIA19	Copia	LTR	4736	medium	4	low	2469020	chromoarm	1575	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	11121844	11122091	AT3TE46250	.	-	ATCOPIA19	Copia	LTR	247	short	4	low	2467666	chromoarm	6801	no-CHH	no-CHH	.	.	.	.	.
Chr3	11122706	11127674	AT3TE46255	.	-	ATCOPIA14	Copia	LTR	4968	medium	7	low	2462083	chromoarm	1218	no-CHH	no-CHH	.	.	.	.	.
Chr3	11132135	11132203	AT3TE46265	.	+	ATREP11A	Helitron	RC	68	tiny	95	medium	2457554	chromoarm	625	no-CHH	no-CHH	.	.	.	.	.
Chr3	11132203	11132616	AT3TE46270	.	+	ATREP2	Helitron	RC	413	short	164	medium	2457141	chromoarm	693	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11132616	11133977	AT3TE46275	.	+	ATREP10D	Helitron	RC	1361	short	1295	high	2455780	chromoarm	1106	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11133977	11134019	AT3TE46280	.	+	ARNOLDY1	MuDR	DNA	42	tiny	237	high	2455738	chromoarm	2220	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	11134019	11135124	AT3TE46285	.	-	ATREP11	Helitron	RC	1105	short	841	high	2454633	chromoarm	1115	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	11135124	11135146	AT3TE46290	.	+	BRODYAGA1A	MuDR	DNA	22	tiny	586	high	2454611	chromoarm	1093	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	11135187	11135596	AT3TE46295	.	-	BOMZH2	MuDR	DNA	409	short	47	low	2454161	chromoarm	643	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11135596	11135657	AT3TE46300	.	+	BOMZH2	MuDR	DNA	61	tiny	47	low	2454100	chromoarm	582	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11135658	11135780	AT3TE46305	.	-	BOMZH2	MuDR	DNA	123	short	47	low	2453977	chromoarm	459	.	.	.	.	.	.	.
Chr3	11135797	11135917	AT3TE46310	.	-	ATHPOGON1	Pogo	DNA	120	short	174	medium	2453840	chromoarm	322	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11140920	11141140	AT3TE46330	.	+	RathE3_cons	.	RathE3_cons	221	short	104	medium	2448617	chromoarm	3377	.	.	.	.	.	.	.
Chr3	11141518	11142228	AT3TE46335	.	+	ATREP11	Helitron	RC	710	short	841	high	2447529	chromoarm	3976	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11142304	11142406	AT3TE46340	.	-	BRODYAGA2	MuDR	DNA	102	short	525	high	2447351	chromoarm	4762	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11143793	11144214	AT3TE46345	.	-	ATMU1	MuDR	DNA	421	short	59	medium	2445543	chromoarm	4858	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	11144340	11146916	AT3TE46350	.	-	ATLINE1_5	L1	LINE	2576	medium	91	medium	2442841	chromoarm	2156	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	11151332	11151369	AT3TE46360	.	-	HELITRONY3	Helitron	RC	37	tiny	1399	high	2438388	chromoarm	10	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	11151369	11151398	AT3TE46365	.	+	ATREP10B	Helitron	RC	29	tiny	491	high	2438359	chromoarm	47	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	11151398	11152857	AT3TE46370	.	-	ATREP11A	Helitron	RC	1459	short	95	medium	2436900	chromoarm	76	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	11152857	11152925	AT3TE46375	.	-	ATREP11A	Helitron	RC	68	tiny	95	medium	2436832	chromoarm	1535	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11152925	11153023	AT3TE46380	.	+	HELITRONY1B	Helitron	RC	98	tiny	414	high	2436734	chromoarm	1603	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11153023	11153912	AT3TE46385	.	+	ATREP10A	Helitron	RC	889	short	279	high	2435845	chromoarm	1179	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11157910	11158915	AT3TE46395	.	-	ATLINE1A	L1	LINE	1005	short	289	high	2430842	chromoarm	457	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11162128	11162273	AT3TE46405	.	+	ATGP8	Gypsy	LTR	145	short	92	medium	2427484	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	11162715	11162948	AT3TE46410	.	-	RathE2_cons	.	RathE2_cons	233	short	74	medium	2426809	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	11162948	11162970	AT3TE46415	.	-	RathE2_cons	.	RathE2_cons	22	tiny	74	medium	2426787	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	11166458	11166782	AT3TE46425	.	-	ATREP15	Helitron	RC	324	short	1003	high	2422975	chromoarm	200	no-CHH	no-CHH	.	.	.	.	.
Chr3	11166782	11167413	AT3TE46430	.	-	ATREP13	Helitron	RC	631	short	106	medium	2422344	chromoarm	524	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11167413	11168162	AT3TE46435	.	-	BRODYAGA1A	MuDR	DNA	749	short	586	high	2421595	chromoarm	1155	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	11168162	11168290	AT3TE46440	.	-	ATREP1	Helitron	RC	128	short	498	high	2421467	chromoarm	1904	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11168290	11168315	AT3TE46445	.	+	ATREP11	Helitron	RC	25	tiny	841	high	2421442	chromoarm	2032	no-CHH	no-CHH	.	.	.	.	.
Chr3	11168315	11168420	AT3TE46450	.	+	HELITRONY3	Helitron	RC	105	short	1399	high	2421337	chromoarm	2057	no-CHH	no-CHH	.	.	.	.	.
Chr3	11168420	11168978	AT3TE46455	.	+	VANDAL8	MuDR	DNA	558	short	123	medium	2420779	chromoarm	2162	no-CHH	no-CHH	.	.	.	.	.
Chr3	11169280	11169316	AT3TE46460	.	-	ATREP10D	Helitron	RC	36	tiny	1295	high	2420441	chromoarm	3022	no-CHH	no-CHH	.	.	.	.	.
Chr3	11169316	11169366	AT3TE46465	.	-	BRODYAGA2	MuDR	DNA	50	tiny	525	high	2420391	chromoarm	3058	no-CHH	no-CHH	.	.	.	.	.
Chr3	11169366	11170627	AT3TE46470	.	-	ATREP11	Helitron	RC	1261	short	841	high	2419130	chromoarm	3108	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11170627	11170719	AT3TE46475	.	-	ATREP3	Helitron	RC	92	tiny	1439	high	2419038	chromoarm	4369	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	11171823	11172189	AT3TE46480	.	-	TA11	L1	LINE	366	short	157	medium	2417568	chromoarm	5565	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	11172189	11172262	AT3TE46485	.	-	TA11	L1	LINE	73	tiny	157	medium	2417495	chromoarm	5931	no-RdDM	no-CHH	.	.	.	.	.
Chr3	11172286	11172430	AT3TE46490	.	-	ATLINE1_5	L1	LINE	144	short	91	medium	2417327	chromoarm	6028	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	11172430	11174181	AT3TE46495	.	-	ATLINE1_5	L1	LINE	1751	short	91	medium	2415576	chromoarm	6172	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	11174830	11174948	AT3TE46500	.	+	ARNOLD3	MuDR	DNA	118	short	45	low	2414809	chromoarm	8572	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	11175806	11175861	AT3TE46505	.	+	ATREP1	Helitron	RC	55	tiny	498	high	2413896	chromoarm	9548	no-RdDM	no-CHH	.	.	.	.	.
Chr3	11175866	11176668	AT3TE46510	.	-	ATREP11	Helitron	RC	802	short	841	high	2413089	chromoarm	9608	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11176668	11176818	AT3TE46515	.	+	HELITRONY1D	Helitron	RC	150	short	756	high	2412939	chromoarm	10410	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11176820	11181607	AT3TE46520	.	-	ARNOLD2	MuDR	DNA	4787	medium	68	medium	2408150	chromoarm	7195	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	11176977,11176977	11180660,11180688	+,+	transcript_id-"e2fb1f7b-45bb-435e-aeba-36d3fdc7333f|10",transcript_id-"1ef78e0d-7deb-45ef-bb03-80cd603ae310|6"
Chr3	11181607	11182175	AT3TE46525	.	+	ATREP10B	Helitron	RC	568	short	491	high	2407582	chromoarm	6627	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11182175	11182359	AT3TE46530	.	-	ATREP3	Helitron	RC	184	short	1439	high	2407398	chromoarm	6443	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11182691	11182721	AT3TE46535	.	-	ATREP11	Helitron	RC	30	tiny	841	high	2407036	chromoarm	6081	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11182721	11182782	AT3TE46540	.	+	ATREP10A	Helitron	RC	61	tiny	279	high	2406975	chromoarm	6020	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11182782	11183100	AT3TE46545	.	+	ATREP10C	Helitron	RC	318	short	123	medium	2406657	chromoarm	5702	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11183100	11183889	AT3TE46550	.	-	ARNOLDY1	MuDR	DNA	789	short	237	high	2405868	chromoarm	4913	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11183889	11184951	AT3TE46555	.	+	BRODYAGA1	MuDR	DNA	1062	short	251	high	2404806	chromoarm	3851	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11184952	11185256	AT3TE46560	.	-	BRODYAGA1	MuDR	DNA	304	short	251	high	2404501	chromoarm	3546	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11185499	11187434	AT3TE46565	.	+	ATCOPIA28	Copia	LTR	1935	short	81	medium	2402323	chromoarm	1368	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	11187434	11187873	AT3TE46570	.	+	ATCOPIA27	Copia	LTR	439	short	19	low	2401884	chromoarm	929	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11187873	11188556	AT3TE46575	.	-	ATREP11	Helitron	RC	683	short	841	high	2401201	chromoarm	246	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11188556	11188623	AT3TE46580	.	-	ATREP10B	Helitron	RC	67	tiny	491	high	2401134	chromoarm	179	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11195562	11195866	AT3TE46610	.	-	ATHILA4A	Gypsy	LTR	304	short	310	high	2393891	chromoarm	614	no-CHH	no-CHH	.	.	.	.	.
Chr3	11195885	11196448	AT3TE46615	.	+	ATHPOGON1	Pogo	DNA	563	short	174	medium	2393309	chromoarm	937	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11196448	11196603	AT3TE46620	.	+	ATCOPIA84	Copia	LTR	155	short	10	low	2393154	chromoarm	1500	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11196986	11197033	AT3TE46625	.	-	ATHILA4D_LTR	Gypsy	LTR	47	tiny	106	medium	2392724	chromoarm	2038	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11197033	11198152	AT3TE46630	.	-	ATHILA4C	Gypsy	LTR	1119	short	206	high	2391605	chromoarm	2085	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	11198190	11198725	AT3TE46635	.	-	ATHILA4	Gypsy	LTR	535	short	250	high	2391032	chromoarm	3242	no-CHH	no-CHH	.	.	.	.	.
Chr3	11199148	11199729	AT3TE46640	.	+	ATREP9	Helitron	RC	581	short	201	high	2390028	chromoarm	4200	no-CHH	no-CHH	.	.	.	.	.
Chr3	11200343	11200454	AT3TE46645	.	-	ATREP11	Helitron	RC	111	short	841	high	2389303	chromoarm	5395	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11200455	11200483	AT3TE46650	.	-	ATREP4	Helitron	RC	29	tiny	832	high	2389274	chromoarm	5506	.	.	.	.	.	.	.
Chr3	11200483	11202772	AT3TE46655	.	-	ATREP4	Helitron	RC	2289	medium	832	high	2386985	chromoarm	5535	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11202775	11202992	AT3TE46660	.	-	ATREP10D	Helitron	RC	217	short	1295	high	2386765	chromoarm	6593	no-RdDM	no-CHH	.	.	.	.	.
Chr3	11203883	11205163	AT3TE46665	.	+	ATREP11	Helitron	RC	1280	short	841	high	2384594	chromoarm	4422	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	11205164	11206300	AT3TE46670	.	-	ATGP1	Gypsy	LTR	1137	short	144	medium	2383457	chromoarm	3285	.	.	ExpressedAndAnnotated	11206174,11206174,11206174,11206174,11206174	11205234,11205235,11205239,11205239,11205239	-,-,-,-,-	transcript_id-"c33745ce-3669-4258-ba74-5c8e7d17bf36|3",transcript_id-"64d4ed7e-599a-466e-8286-989af16f03c0|8",transcript_id-"454fb75b-2052-427c-a29a-1fb664a2fe6c|65",transcript_id-"7b3bd02d-8923-4212-b6f0-c853d0923523|5",transcript_id-"dd3de86f-ca9d-4334-ac4f-9ef56e52c845|4"
Chr3	11206300	11206501	AT3TE46675	.	-	VANDAL20	MuDR	DNA	201	short	51	medium	2383256	chromoarm	3084	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11207841	11208997	AT3TE46680	.	-	ATREP4	Helitron	RC	1156	short	832	high	2380760	chromoarm	588	no-CHH	no-CHH	.	.	.	.	.
Chr3	11209008	11209546	AT3TE46685	.	+	ARNOLDY1	MuDR	DNA	538	short	237	high	2380211	chromoarm	39	no-CHH	no-CHH	.	.	.	.	.
Chr3	11210090	11210245	AT3TE46690	.	-	ATLINE1A	L1	LINE	155	short	289	high	2379512	chromoarm	0	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	11217064	11217460	AT3TE46720	.	+	ATREP4	Helitron	RC	396	short	832	high	2372297	chromoarm	230	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	11217460	11218074	AT3TE46725	.	-	TNAT1A	.	DNA	614	short	162	medium	2371683	chromoarm	626	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11218239	11218562	AT3TE46730	.	+	ATCOPIA6	Copia	LTR	323	short	8	low	2371195	chromoarm	1405	no-CHH	no-CHH	.	.	.	.	.
Chr3	11219019	11220022	AT3TE46735	.	+	ATREP3	Helitron	RC	1003	short	1439	high	2369735	chromoarm	2185	no-CHH	no-CHH	.	.	.	.	.
Chr3	11220022	11220388	AT3TE46740	.	+	BRODYAGA2	MuDR	DNA	366	short	525	high	2369369	chromoarm	3188	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11220393	11220424	AT3TE46745	.	-	ATREP15	Helitron	RC	31	tiny	1003	high	2369333	chromoarm	3559	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11220424	11220976	AT3TE46750	.	+	BRODYAGA2	MuDR	DNA	552	short	525	high	2368781	chromoarm	3590	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11221305	11222006	AT3TE46755	.	+	HELITRONY3	Helitron	RC	701	short	1399	high	2367751	chromoarm	4471	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	11222006	11223349	AT3TE46760	.	-	ATREP4	Helitron	RC	1343	short	832	high	2366408	chromoarm	5172	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11223349	11223667	AT3TE46765	.	+	ATREP3	Helitron	RC	318	short	1439	high	2366090	chromoarm	6515	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	11225592	11225667	AT3TE46770	.	+	HARBINGER	Harbinger	DNA	75	tiny	90	medium	2364090	chromoarm	8758	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	11225886	11227023	AT3TE46775	.	-	SIMPLEGUY1	Harbinger	DNA	1137	short	116	medium	2362734	chromoarm	8302	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	11228103	11228187	AT3TE46780	.	+	VANDAL13	MuDR	DNA	84	tiny	38	low	2361570	chromoarm	7138	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11231600	11232569	AT3TE46790	.	+	ATCOPIA28	Copia	LTR	969	short	81	medium	2357188	chromoarm	2756	PolIV-and-RDR6-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	11232569	11233669	AT3TE46795	.	+	ATCOPIA27	Copia	LTR	1100	short	19	low	2356088	chromoarm	1656	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	11233669	11233742	AT3TE46800	.	+	ATCOPIA28	Copia	LTR	73	tiny	81	medium	2356015	chromoarm	1583	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	11233742	11234171	AT3TE46805	.	+	BRODYAGA1A	MuDR	DNA	429	short	586	high	2355586	chromoarm	1154	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr3	11241141	11241384	AT3TE46830	.	-	BRODYAGA1A	MuDR	DNA	244	short	586	high	2348373	chromoarm	1015	.	.	.	.	.	.	.
Chr3	11243290	11243482	AT3TE46835	.	-	ATREP10B	Helitron	RC	192	short	491	high	2346275	chromoarm	3165	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	11243483	11243538	AT3TE46840	.	-	ATREP4	Helitron	RC	56	tiny	832	high	2346219	chromoarm	3357	.	.	.	.	.	.	.
Chr3	11243538	11244373	AT3TE46845	.	-	ATREP4	Helitron	RC	835	short	832	high	2345384	chromoarm	2637	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	11244373	11244524	AT3TE46850	.	-	HELITRONY3	Helitron	RC	151	short	1399	high	2345233	chromoarm	2486	no-RdDM	no-CHH	.	.	.	.	.
Chr3	11244524	11245283	AT3TE46855	.	-	TNAT2A	.	DNA	759	short	38	low	2344474	chromoarm	1727	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11245283	11245357	AT3TE46860	.	-	ATREP10D	Helitron	RC	74	tiny	1295	high	2344400	chromoarm	1653	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11245357	11246484	AT3TE46865	.	-	HELITRONY3	Helitron	RC	1127	short	1399	high	2343273	chromoarm	526	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11246484	11246581	AT3TE46870	.	+	ATREP10D	Helitron	RC	97	tiny	1295	high	2343176	chromoarm	429	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	11246581	11246668	AT3TE46875	.	+	HELITRONY3	Helitron	RC	87	tiny	1399	high	2343089	chromoarm	342	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	11246668	11246755	AT3TE46880	.	+	ATREP10B	Helitron	RC	87	tiny	491	high	2343002	chromoarm	255	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	11248280	11248544	AT3TE46885	.	+	HELITRONY1A	Helitron	RC	264	short	271	high	2341213	chromoarm	127	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11252004	11252034	AT3TE46895	.	-	ATREP10B	Helitron	RC	30	tiny	491	high	2337723	chromoarm	552	no-CHH	RDR6-RdDM	.	.	.	.	.
Chr3	11252034	11252490	AT3TE46900	.	+	ATHATN3	HAT	DNA	456	short	70	medium	2337267	chromoarm	380	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	11252490	11252604	AT3TE46905	.	-	ATREP10	Helitron	RC	114	short	63	medium	2337153	chromoarm	266	no-CHH	no-CHH	.	.	.	.	.
Chr3	11263354	11263556	AT3TE46950	.	-	BRODYAGA1	MuDR	DNA	202	short	251	high	2326201	chromoarm	822	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11263647	11263789	AT3TE46955	.	-	ATMU7	MuDR	DNA	142	short	32	low	2325968	chromoarm	589	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11265540	11266689	AT3TE46960	.	+	ARNOLDY2	MuDR	DNA	1149	short	288	high	2323068	chromoarm	132	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	11266689	11266744	AT3TE46965	.	-	HELITRONY3	Helitron	RC	55	tiny	1399	high	2323013	chromoarm	630	no-CHH	no-CHH	.	.	.	.	.
Chr3	11271685	11272375	AT3TE46980	.	-	HARBINGER	Harbinger	DNA	690	short	90	medium	2317382	chromoarm	2868	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11272700	11273207	AT3TE46985	.	-	ATREP5	Helitron	RC	507	short	624	high	2316550	chromoarm	3883	no-CHH	no-CHH	.	.	.	.	.
Chr3	11273207	11273338	AT3TE46990	.	-	ATHPOGON1	Pogo	DNA	131	short	174	medium	2316419	chromoarm	4390	no-CHH	no-CHH	.	.	.	.	.
Chr3	11275149	11275313	AT3TE46995	.	+	ATTIRX1B	.	DNA	164	short	44	low	2314444	chromoarm	3338	no-CHH	no-CHH	.	.	.	.	.
Chr3	11279282	11279565	AT3TE47005	.	+	RathE2_cons	.	RathE2_cons	283	short	74	medium	2310192	chromoarm	325	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	11283806	11283961	AT3TE47015	.	+	RathE3_cons	.	RathE3_cons	155	short	104	medium	2305796	chromoarm	282	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11283963	11284274	AT3TE47020	.	+	ATREP11	Helitron	RC	311	short	841	high	2305483	chromoarm	120	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11285617	11285830	AT3TE47025	.	+	BRODYAGA1A	MuDR	DNA	213	short	586	high	2303927	chromoarm	215	no-CHH	no-CHH	.	.	.	.	.
Chr3	11286346	11286432	AT3TE47030	.	+	ATREP3	Helitron	RC	86	tiny	1439	high	2303325	chromoarm	944	no-CHH	no-CHH	.	.	.	.	.
Chr3	11286432	11288246	AT3TE47035	.	-	ATREP11	Helitron	RC	1814	short	841	high	2301511	chromoarm	1030	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11288246	11288721	AT3TE47040	.	-	ATREP4	Helitron	RC	475	short	832	high	2301036	chromoarm	953	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	11288721	11288749	AT3TE47045	.	-	ATREP3	Helitron	RC	28	tiny	1439	high	2301008	chromoarm	925	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11294741	11294776	AT3TE47070	.	-	BRODYAGA1	MuDR	DNA	35	tiny	251	high	2294981	chromoarm	217	no-CHH	no-CHH	.	.	.	.	.
Chr3	11294776	11295306	AT3TE47075	.	+	ATDNA2T9C	MuDR	DNA	530	short	242	high	2294451	chromoarm	252	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11295307	11295333	AT3TE47080	.	-	BRODYAGA1	MuDR	DNA	27	tiny	251	high	2294424	chromoarm	782	.	.	.	.	.	.	.
Chr3	11296651	11296793	AT3TE47085	.	+	VANDAL16	MuDR	DNA	142	short	42	low	2292964	chromoarm	545	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11299808	11299878	AT3TE47095	.	+	ATDNA2T9C	MuDR	DNA	70	tiny	242	high	2289879	chromoarm	493	no-CHH	no-CHH	.	.	.	.	.
Chr3	11301118	11301487	AT3TE47100	.	+	ATTIRX1B	.	DNA	369	short	44	low	2288270	chromoarm	1086	no-CHH	no-CHH	.	.	.	.	.
Chr3	11305232	11306077	AT3TE47110	.	+	HELITRONY1D	Helitron	RC	845	short	756	high	2283680	chromoarm	172	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	11306077	11306121	AT3TE47115	.	+	HELITRONY1D	Helitron	RC	44	tiny	756	high	2283636	chromoarm	1017	no-RdDM	no-CHH	.	.	.	.	.
Chr3	11306121	11306183	AT3TE47120	.	-	BRODYAGA1A	MuDR	DNA	62	tiny	586	high	2283574	chromoarm	1061	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr3	11306183	11306576	AT3TE47125	.	+	HELITRONY1B	Helitron	RC	393	short	414	high	2283181	chromoarm	1123	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	11308168	11308454	AT3TE47130	.	+	HELITRONY1A	Helitron	RC	287	short	271	high	2281303	chromoarm	2972	.	.	.	.	.	.	.
Chr3	11308618	11309899	AT3TE47135	.	+	HELITRONY1D	Helitron	RC	1281	short	756	high	2279858	chromoarm	1527	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	11309576	11309830	AT3TE47140	.	+	DT1	Mariner	DNA	254	short	123	medium	2279927	chromoarm	1596	no-CHH	no-CHH	.	.	.	.	.
Chr3	11309899	11310244	AT3TE47145	.	-	HELITRONY1A	Helitron	RC	345	short	271	high	2279513	chromoarm	1182	no-CHH	no-CHH	.	.	.	.	.
Chr3	11310244	11310305	AT3TE47150	.	+	BRODYAGA1A	MuDR	DNA	61	tiny	586	high	2279452	chromoarm	1121	no-CHH	no-CHH	.	.	.	.	.
Chr3	11313524	11313699	AT3TE47160	.	+	RathE1_cons	.	RathE1_cons	175	short	213	high	2276058	chromoarm	384	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11313910	11314115	AT3TE47165	.	+	ATREP10D	Helitron	RC	205	short	1295	high	2275642	chromoarm	770	no-CHH	no-CHH	.	.	.	.	.
Chr3	11314115	11314786	AT3TE47170	.	-	ATREP10D	Helitron	RC	671	short	1295	high	2274971	chromoarm	975	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11314786	11315592	AT3TE47175	.	+	ATREP2	Helitron	RC	806	short	164	medium	2274165	chromoarm	1646	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11315592	11316209	AT3TE47180	.	-	ARNOLDY2	MuDR	DNA	617	short	288	high	2273548	chromoarm	2452	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11316209	11321541	AT3TE47185	.	-	ARNOLDY2	MuDR	DNA	5332	long	288	high	2268216	chromoarm	1127	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11317311	11319127	AT3TE47190	.	+	HELITRONY3	Helitron	RC	1816	short	1399	high	2270630	chromoarm	3541	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11319128	11319278	AT3TE47195	.	-	HELITRONY3	Helitron	RC	151	short	1399	high	2270479	chromoarm	3390	.	.	.	.	.	.	.
Chr3	11319278	11319496	AT3TE47200	.	-	HELITRONY3	Helitron	RC	218	short	1399	high	2270261	chromoarm	3172	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11319767	11319857	AT3TE47205	.	-	HELITRONY3	Helitron	RC	90	tiny	1399	high	2269900	chromoarm	2811	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11321548	11322119	AT3TE47210	.	-	META1	Copia	LTR	571	short	138	medium	2267638	chromoarm	549	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	11324405	11324467	AT3TE47215	.	-	ATCOPIA29	Copia	LTR	62	tiny	19	low	2265290	chromoarm	0	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	11324467	11327495	AT3TE47220	.	-	ATCOPIA29	Copia	LTR	3028	medium	19	low	2262262	chromoarm	0	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	11327495	11328616	AT3TE47225	.	+	ATREP3	Helitron	RC	1121	short	1439	high	2261141	chromoarm	2913	no-RdDM	no-CHH	.	.	.	.	.
Chr3	11328627	11335552	AT3TE47230	.	+	ATGP1	Gypsy	LTR	6925	long	144	medium	2254205	chromoarm	4045	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11335552	11341895	AT3TE47235	.	+	ATCOPIA27	Copia	LTR	6343	long	19	low	2247862	chromoarm	10970	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	11335866	11337871	+	transcript_id-"b143d601-c51b-4108-9554-bc78946d3bc0|4"
Chr3	11341928	11344898	AT3TE47240	.	-	ATLINE1A	L1	LINE	2970	medium	289	high	2244859	chromoarm	14613	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	11344898	11345429	AT3TE47245	.	-	ATLINE1_4	L1	LINE	531	short	102	medium	2244328	chromoarm	14082	no-CHH	no-CHH	.	.	.	.	.
Chr3	11345521	11345762	AT3TE47250	.	-	ATREP15	Helitron	RC	241	short	1003	high	2243995	chromoarm	13749	no-CHH	no-CHH	.	.	.	.	.
Chr3	11345762	11345815	AT3TE47255	.	+	ATREP4	Helitron	RC	53	tiny	832	high	2243942	chromoarm	13696	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11345815	11348584	AT3TE47260	.	+	ATREP4	Helitron	RC	2769	medium	832	high	2241173	chromoarm	10927	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11348584	11348854	AT3TE47265	.	+	HELITRONY1D	Helitron	RC	270	short	756	high	2240903	chromoarm	10657	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	11352478	11354141	AT3TE47275	.	-	ATCOPIA41	Copia	LTR	1663	short	39	low	2235616	chromoarm	5370	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	11354325	11357862	AT3TE47280	.	+	ATCOPIA41	Copia	LTR	3537	medium	39	low	2231895	chromoarm	1649	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11358039	11358205	AT3TE47285	.	-	ATGP8	Gypsy	LTR	166	short	92	medium	2231552	chromoarm	1306	no-CHH	no-CHH	.	.	.	.	.
Chr3	11358295	11358424	AT3TE47290	.	-	ATLINE1A	L1	LINE	129	short	289	high	2231333	chromoarm	1087	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	11360137	11362878	AT3TE47295	.	-	VANDAL1N1	MuDR	DNA	2741	medium	52	medium	2226879	chromoarm	0	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	11360691	11361223	AT3TE47300	.	-	VANDAL1N1	MuDR	DNA	532	short	52	medium	2228534	chromoarm	483	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11364708	11364835	AT3TE47310	.	-	ATREP7	Helitron	RC	127	short	164	medium	2224922	chromoarm	0	no-RdDM	no-CHH	.	.	.	.	.
Chr3	11364835	11364880	AT3TE47315	.	+	TNAT1A	.	DNA	45	tiny	162	medium	2224877	chromoarm	46	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	11364880	11365058	AT3TE47320	.	-	ATHATN7	HAT	DNA	178	short	71	medium	2224699	chromoarm	91	no-RdDM	no-CHH	.	.	.	.	.
Chr3	11365058	11365831	AT3TE47325	.	+	TNAT1A	.	DNA	773	short	162	medium	2223926	chromoarm	269	no-CHH	no-CHH	.	.	.	.	.
Chr3	11365831	11366015	AT3TE47330	.	+	ATREP4	Helitron	RC	184	short	832	high	2223742	chromoarm	1042	no-RdDM	no-CHH	.	.	.	.	.
Chr3	11366015	11366436	AT3TE47335	.	-	ATLINE1A	L1	LINE	421	short	289	high	2223321	chromoarm	1226	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11366440	11366606	AT3TE47340	.	-	ATREP3	Helitron	RC	166	short	1439	high	2223151	chromoarm	1651	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11366606	11367365	AT3TE47345	.	+	AT9TSD1	MuDR	DNA	759	short	55	medium	2222392	chromoarm	1817	no-CHH	no-CHH	.	.	.	.	.
Chr3	11367365	11367684	AT3TE47350	.	-	ATREP9	Helitron	RC	319	short	201	high	2222073	chromoarm	2576	no-CHH	no-CHH	.	.	.	.	.
Chr3	11367684	11367721	AT3TE47355	.	-	ATREP10D	Helitron	RC	37	tiny	1295	high	2222036	chromoarm	2895	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	11369854	11370572	AT3TE47360	.	-	ATGP1	Gypsy	LTR	718	short	144	medium	2219185	chromoarm	5065	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	11370952	11371110	AT3TE47365	.	+	ATGP8	Gypsy	LTR	158	short	92	medium	2218647	chromoarm	6163	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11371110	11372438	AT3TE47370	.	-	HELITRON4	Helitron	RC	1328	short	199	medium	2217319	chromoarm	6321	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	11372438	11372463	AT3TE47375	.	-	HELITRON1	Helitron	RC	25	tiny	130	medium	2217294	chromoarm	7649	no-CHH	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	11372642	11373123	AT3TE47380	.	+	HELITRONY3	Helitron	RC	482	short	1399	high	2216634	chromoarm	7852	.	.	.	.	.	.	.
Chr3	11373123	11375009	AT3TE47385	.	+	ARNOLDY1	MuDR	DNA	1886	short	237	high	2214748	chromoarm	7406	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11375009	11375114	AT3TE47390	.	+	ARNOLDY2	MuDR	DNA	105	short	288	high	2214643	chromoarm	7301	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11375114	11376934	AT3TE47395	.	+	ATREP3	Helitron	RC	1820	short	1439	high	2212823	chromoarm	5481	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11376935	11378111	AT3TE47400	.	-	ATGP1	Gypsy	LTR	1176	short	144	medium	2211646	chromoarm	4304	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11378163	11378293	AT3TE47405	.	-	HELITRON2	Helitron	RC	131	short	194	medium	2211464	chromoarm	4122	.	.	LowExpressed	.	.	.	.
Chr3	11378294	11378557	AT3TE47410	.	-	ATGP1	Gypsy	LTR	264	short	144	medium	2211200	chromoarm	3858	.	.	LowExpressed	.	.	.	.
Chr3	11378616	11378746	AT3TE47415	.	-	HELITRON2	Helitron	RC	131	short	194	medium	2211011	chromoarm	3669	.	.	LowExpressed	.	.	.	.
Chr3	11378751	11379010	AT3TE47420	.	-	ATGP1	Gypsy	LTR	260	short	144	medium	2210747	chromoarm	3405	.	.	LowExpressed	.	.	.	.
Chr3	11379069	11379199	AT3TE47425	.	-	HELITRON2	Helitron	RC	131	short	194	medium	2210558	chromoarm	3216	.	.	LowExpressed	.	.	.	.
Chr3	11379199	11379470	AT3TE47430	.	-	ATGP1	Gypsy	LTR	271	short	144	medium	2210287	chromoarm	2945	no-CHH	DCL3-RdDM	.	.	.	.	.
Chr3	11379522	11379652	AT3TE47435	.	-	HELITRON2	Helitron	RC	131	short	194	medium	2210105	chromoarm	2763	.	.	.	.	.	.	.
Chr3	11379652	11379916	AT3TE47440	.	-	ATGP1	Gypsy	LTR	264	short	144	medium	2209841	chromoarm	2499	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11379975	11380106	AT3TE47445	.	-	HELITRON2	Helitron	RC	131	short	194	medium	2209651	chromoarm	2309	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	11380106	11380377	AT3TE47450	.	-	ATGP1	Gypsy	LTR	271	short	144	medium	2209380	chromoarm	2038	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	11380427	11380459	AT3TE47455	.	-	HELITRON2	Helitron	RC	32	tiny	194	medium	2209298	chromoarm	1956	PolIV-and-RDR6-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	11380459	11381082	AT3TE47460	.	+	ATREP3	Helitron	RC	623	short	1439	high	2208675	chromoarm	1333	no-CHH	no-CHH	.	.	.	.	.
Chr3	11381082	11381848	AT3TE47465	.	+	TAG3N1	HAT	DNA	766	short	97	medium	2207909	chromoarm	567	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	11381848	11381889	AT3TE47470	.	-	HELITRON2	Helitron	RC	41	tiny	194	medium	2207868	chromoarm	526	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr3	11384398	11384435	AT3TE47480	.	-	ATREP3	Helitron	RC	37	tiny	1439	high	2205322	chromoarm	741	no-CHH	no-CHH	.	.	.	.	.
Chr3	11384435	11385962	AT3TE47485	.	-	ATREP15	Helitron	RC	1527	short	1003	high	2203795	chromoarm	778	no-CHH	no-CHH	.	.	.	.	.
Chr3	11385962	11386156	AT3TE47490	.	+	HELITRONY3	Helitron	RC	194	short	1399	high	2203601	chromoarm	2305	no-CHH	no-CHH	.	.	.	.	.
Chr3	11387807	11388453	AT3TE47495	.	-	ATCOPIA37	Copia	LTR	646	short	32	low	2201304	chromoarm	4150	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	11389554	11391889	AT3TE47500	.	+	ATGP3	Gypsy	LTR	2335	medium	60	medium	2197868	chromoarm	2785	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	11392705	11393765	AT3TE47505	.	-	ATCOPIA37	Copia	LTR	1060	short	32	low	2195992	chromoarm	909	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	11393765	11393820	AT3TE47510	.	-	ATCOPIA37	Copia	LTR	55	tiny	32	low	2195937	chromoarm	854	no-RdDM	no-CHH	.	.	.	.	.
Chr3	11393820	11394418	AT3TE47515	.	-	ATCOPIA37	Copia	LTR	598	short	32	low	2195339	chromoarm	256	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	11396199	11396528	AT3TE47520	.	+	SIMPLEHAT2	HAT	DNA	329	short	73	medium	2193229	chromoarm	328	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11396528	11397740	AT3TE47525	.	+	HELITRONY3	Helitron	RC	1212	short	1399	high	2192017	chromoarm	657	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11397740	11398707	AT3TE47530	.	-	ATREP3	Helitron	RC	967	short	1439	high	2191050	chromoarm	209	no-CHH	no-CHH	.	.	.	.	.
Chr3	11400764	11400891	AT3TE47535	.	-	TNAT2A	.	DNA	127	short	38	low	2188866	chromoarm	498	no-CHH	no-CHH	.	.	.	.	.
Chr3	11403506	11403725	AT3TE47545	.	+	ATLANTYS2	Gypsy	LTR	219	short	179	medium	2186032	chromoarm	3240	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	11403736	11403841	AT3TE47550	.	+	ATLANTYS3	Gypsy	LTR	105	short	142	medium	2185916	chromoarm	3470	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	11404272	11413061	AT3TE47555	.	+	VANDAL21	MuDR	DNA	8789	long	64	medium	2176696	chromoarm	4006	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	11404441,11409441,11409457	11406729,11410337,11410232	+,+,+	transcript_id-"3d1e03da-766c-409e-bc6a-aaf962f7523c|10",transcript_id-"75148373-7d4b-404b-b421-874f231cdb23|5",transcript_id-"001b98d0-d7a8-4281-a36b-443aa5461d34|13"
Chr3	11406729	11408733	AT3TE47560	.	-	ATGP2N	Gypsy	LTR	2004	medium	54	medium	2181024	chromoarm	6463	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	11414124	11414552	AT3TE47580	.	-	ATREP10A	Helitron	RC	428	short	279	high	2175205	chromoarm	13858	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11415793	11415973	AT3TE47585	.	+	ATLANTYS2	Gypsy	LTR	180	short	179	medium	2173784	chromoarm	15527	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	11416492	11416838	AT3TE47590	.	+	ATLANTYS2	Gypsy	LTR	346	short	179	medium	2172919	chromoarm	16226	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11416917	11424474	AT3TE47595	.	+	ATGP2	Gypsy	LTR	7557	long	48	low	2165283	chromoarm	16651	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	11424582	11424801	AT3TE47600	.	+	ATLANTYS2	Gypsy	LTR	219	short	179	medium	2164956	chromoarm	22376	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	11424812	11424917	AT3TE47605	.	+	ATLANTYS3	Gypsy	LTR	105	short	142	medium	2164840	chromoarm	22260	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	11425193	11425728	AT3TE47610	.	+	ATREP10D	Helitron	RC	535	short	1295	high	2164029	chromoarm	21449	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11425728	11426498	AT3TE47615	.	+	TNAT1A	.	DNA	770	short	162	medium	2163259	chromoarm	20679	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11426513	11429270	AT3TE47620	.	+	ATHILA8B	Gypsy	LTR	2757	medium	78	medium	2160487	chromoarm	17907	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	11429271	11430076	AT3TE47625	.	+	ATGP1	Gypsy	LTR	805	short	144	medium	2159681	chromoarm	17101	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	11430076	11430662	AT3TE47630	.	-	ATGP1	Gypsy	LTR	586	short	144	medium	2159095	chromoarm	16515	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	11431422	11432265	AT3TE47635	.	+	HELITRONY1D	Helitron	RC	843	short	756	high	2157492	chromoarm	14912	no-RdDM	no-CHH	.	.	.	.	.
Chr3	11432265	11432439	AT3TE47640	.	+	HELITRONY3	Helitron	RC	174	short	1399	high	2157318	chromoarm	14738	PolIV-and-RDR6-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	11432989	11434703	AT3TE47645	.	+	VANDAL17	MuDR	DNA	1714	short	178	medium	2155054	chromoarm	12474	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	11433282	11433408	AT3TE47650	.	+	VANDAL8	MuDR	DNA	126	short	123	medium	2156349	chromoarm	13769	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11434794	11435148	AT3TE47655	.	+	VANDAL17	MuDR	DNA	354	short	178	medium	2154609	chromoarm	12029	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11435148	11435176	AT3TE47660	.	+	HELITRONY1B	Helitron	RC	28	tiny	414	high	2154581	chromoarm	12001	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	11435176	11435931	AT3TE47665	.	+	HELITRONY1E	Helitron	RC	755	short	447	high	2153826	chromoarm	11246	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	11436681	11437648	AT3TE47670	.	+	ATREP5	Helitron	RC	967	short	624	high	2152109	chromoarm	9529	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	11439153	11439874	AT3TE47675	.	-	ATREP15	Helitron	RC	721	short	1003	high	2149883	chromoarm	7303	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11439874	11439896	AT3TE47680	.	-	ATREP6	Helitron	RC	22	tiny	181	medium	2149861	chromoarm	7281	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	11439896	11441521	AT3TE47685	.	-	ATREP10D	Helitron	RC	1625	short	1295	high	2148236	chromoarm	5656	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	11444174	11444716	AT3TE47695	.	+	HARBINGER	Harbinger	DNA	542	short	90	medium	2145041	chromoarm	2461	no-RdDM	no-CHH	.	.	.	.	.
Chr3	11444908	11444984	AT3TE47700	.	-	ARNOLDY2	MuDR	DNA	76	tiny	288	high	2144773	chromoarm	2193	no-CHH	no-CHH	.	.	.	.	.
Chr3	11444984	11446158	AT3TE47705	.	+	HELITRONY3	Helitron	RC	1174	short	1399	high	2143599	chromoarm	1019	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11446158	11446252	AT3TE47710	.	-	HELITRONY3	Helitron	RC	94	tiny	1399	high	2143505	chromoarm	925	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11446254	11447177	AT3TE47715	.	+	ATREP11	Helitron	RC	923	short	841	high	2142580	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11447177	11447207	AT3TE47720	.	-	META1	Copia	LTR	30	tiny	138	medium	2142550	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	11450594	11450869	AT3TE47730	.	-	ATREP19	.	DNA	275	short	189	medium	2138888	chromoarm	2070	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr3	11453217	11453306	AT3TE47740	.	+	ATSINE2A	.	SINE	89	tiny	33	low	2136451	chromoarm	180	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	11455173	11455499	AT3TE47745	.	+	VANDAL8	MuDR	DNA	326	short	123	medium	2134258	chromoarm	2136	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	11455528	11455559	AT3TE47750	.	-	ATREP1	Helitron	RC	31	tiny	498	high	2134198	chromoarm	2491	no-CHH	no-RdDM	LowExpressed	.	.	.	.
Chr3	11455559	11456359	AT3TE47755	.	-	ATREP1	Helitron	RC	800	short	498	high	2133398	chromoarm	2522	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	11456360	11456466	AT3TE47760	.	+	ATREP5	Helitron	RC	106	short	624	high	2133291	chromoarm	3323	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	11458398	11458992	AT3TE47765	.	+	ATREP9	Helitron	RC	594	short	201	high	2130765	chromoarm	5361	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	11459171	11459898	AT3TE47770	.	-	ATENSPM5	En-Spm	DNA	727	short	111	medium	2129859	chromoarm	5952	no-RdDM	no-RdDM	ExpressedAndAnnotated	11459479	11459809	+	transcript_id-"164926f7-ccc7-4704-ba49-f1ccfa9d664a|3"
Chr3	11459898	11461314	AT3TE47775	.	-	ATENSPM6	En-Spm	DNA	1416	short	151	medium	2128443	chromoarm	4536	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	11461314	11461459	AT3TE47780	.	-	ATENSPM2	En-Spm	DNA	145	short	114	medium	2128298	chromoarm	4391	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	11464745	11465045	AT3TE47790	.	+	ATLINE1_3A	L1	LINE	300	short	160	medium	2124712	chromoarm	805	no-CHH	no-CHH	.	.	.	.	.
Chr3	11465045	11465097	AT3TE47795	.	+	ATLINE1_3A	L1	LINE	52	tiny	160	medium	2124660	chromoarm	753	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	11469076	11469441	AT3TE47805	.	+	BRODYAGA1A	MuDR	DNA	365	short	586	high	2120316	chromoarm	219	no-CHH	no-CHH	.	.	.	.	.
Chr3	11469441	11470089	AT3TE47810	.	-	ATMU7	MuDR	DNA	648	short	32	low	2119668	chromoarm	584	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11472256	11472525	AT3TE47815	.	+	BRODYAGA1A	MuDR	DNA	269	short	586	high	2117232	chromoarm	1058	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	11477946	11477998	AT3TE47830	.	-	ATHPOGON3	Pogo	DNA	52	tiny	118	medium	2111759	chromoarm	733	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	11481301	11481722	AT3TE47840	.	+	ATHPOGON1	Pogo	DNA	421	short	174	medium	2108035	chromoarm	1568	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	11481903	11482016	AT3TE47845	.	-	ATMU2	MuDR	DNA	113	short	64	medium	2107741	chromoarm	2170	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11482833	11482931	AT3TE47850	.	+	ATMU2	MuDR	DNA	98	tiny	64	medium	2106826	chromoarm	3100	RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11487924	11488553	AT3TE47870	.	+	ATIS112A	Harbinger	DNA	629	short	173	medium	2101204	chromoarm	8191	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	11488558	11491070	AT3TE47875	.	-	ATHILA4A	Gypsy	LTR	2512	medium	310	high	2098687	chromoarm	8825	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	11491070	11493852	AT3TE47880	.	-	ATHILA4	Gypsy	LTR	2782	medium	250	high	2095905	chromoarm	11337	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	11495074	11495662	AT3TE47885	.	+	ATIS112A	Harbinger	DNA	588	short	173	medium	2094095	chromoarm	15341	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	11495662	11496911	AT3TE47890	.	-	ATHILA4B_LTR	Gypsy	LTR	1249	short	143	medium	2092846	chromoarm	15929	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	11496959	11497674	AT3TE47895	.	-	ARNOLDY2	MuDR	DNA	715	short	288	high	2092083	chromoarm	17226	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	11497674	11497735	AT3TE47900	.	-	ATREP5	Helitron	RC	61	tiny	624	high	2092022	chromoarm	17941	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr3	11498789	11499221	AT3TE47905	.	+	VANDAL3	MuDR	DNA	432	short	177	medium	2090536	chromoarm	19056	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	11499221	11499308	AT3TE47910	.	+	VANDAL16	MuDR	DNA	87	tiny	42	low	2090449	chromoarm	19488	no-CHH	no-RdDM	.	.	.	.	.
Chr3	11501882	11502055	AT3TE47920	.	+	HELITRONY1E	Helitron	RC	173	short	447	high	2087702	chromoarm	22149	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	11502055	11503915	AT3TE47925	.	-	ATREP3	Helitron	RC	1860	short	1439	high	2085842	chromoarm	22322	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11503915	11504517	AT3TE47930	.	+	ATREP5	Helitron	RC	602	short	624	high	2085240	chromoarm	23434	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11504517	11508368	AT3TE47935	.	+	HELITRON5	Helitron	RC	3851	medium	56	medium	2081389	chromoarm	19583	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	11508368	11508413	AT3TE47940	.	+	HELITRON1	Helitron	RC	45	tiny	130	medium	2081344	chromoarm	19538	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	11508509	11508812	AT3TE47945	.	+	HELITRON1	Helitron	RC	303	short	130	medium	2080945	chromoarm	19139	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	11509089	11509111	AT3TE47950	.	-	ATHILA4	Gypsy	LTR	22	tiny	250	high	2080646	chromoarm	18840	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr3	11509111	11509345	AT3TE47955	.	-	ATHILA4B_LTR	Gypsy	LTR	234	short	143	medium	2080412	chromoarm	18606	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	11512844	11512956	AT3TE47965	.	+	ATHILA7A	Gypsy	LTR	112	short	31	low	2076801	chromoarm	14995	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	11512956	11513763	AT3TE47970	.	+	ATHILA7A	Gypsy	LTR	807	short	31	low	2075994	chromoarm	14188	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	11513763	11521912	AT3TE47975	.	+	ATENSPM11	En-Spm	DNA	8149	long	47	low	2067845	chromoarm	6039	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	11520557	11521553	+	transcript_id-"99ce1ae7-fc71-406d-b855-9bb567d6c027|5"
Chr3	11521912	11522534	AT3TE47980	.	+	ATHILA7	Gypsy	LTR	622	short	134	medium	2067223	chromoarm	5417	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	11523321	11524042	AT3TE47985	.	+	VANDAL12	MuDR	DNA	721	short	37	low	2065715	chromoarm	3909	no-RdDM	no-CHH	.	.	.	.	.
Chr3	11526753	11527034	AT3TE47995	.	+	ATIS112A	Harbinger	DNA	281	short	173	medium	2062723	chromoarm	917	no-CHH	no-CHH	.	.	.	.	.
Chr3	11533445	11533640	AT3TE48020	.	-	ATMU7	MuDR	DNA	195	short	32	low	2056117	chromoarm	641	no-CHH	no-CHH	.	.	.	.	.
Chr3	11533640	11534211	AT3TE48025	.	+	HELITRONY1D	Helitron	RC	571	short	756	high	2055546	chromoarm	836	no-CHH	no-CHH	.	.	.	.	.
Chr3	11534211	11534356	AT3TE48030	.	+	ATREP11	Helitron	RC	145	short	841	high	2055401	chromoarm	1407	no-CHH	no-CHH	.	.	.	.	.
Chr3	11534356	11534382	AT3TE48035	.	+	HELITRONY1C	Helitron	RC	26	tiny	120	medium	2055375	chromoarm	1552	no-CHH	no-CHH	.	.	.	.	.
Chr3	11534697	11534873	AT3TE48040	.	+	SIMPLEHAT1	HAT	DNA	177	short	56	medium	2054884	chromoarm	1892	.	.	.	.	.	.	.
Chr3	11535189	11535251	AT3TE48045	.	+	ATREP4	Helitron	RC	62	tiny	832	high	2054506	chromoarm	2385	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	11535251	11535272	AT3TE48050	.	-	ATREP3	Helitron	RC	21	tiny	1439	high	2054485	chromoarm	2447	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11535272	11535506	AT3TE48055	.	-	ATREP14	Helitron	RC	234	short	47	low	2054251	chromoarm	2468	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11535506	11540086	AT3TE48060	.	+	ATREP3	Helitron	RC	4580	medium	1439	high	2049671	chromoarm	683	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11540086	11540130	AT3TE48065	.	+	SIMPLEHAT1	HAT	DNA	44	tiny	56	medium	2049627	chromoarm	639	no-CHH	no-CHH	.	.	.	.	.
Chr3	11541282	11549498	AT3TE48070	.	+	VANDAL21	MuDR	DNA	8216	long	64	medium	2040259	chromoarm	0	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	11545285	11546081	+	transcript_id-"09b645b2-eb7c-470d-8d16-c8ea01e1fb6b|78"
Chr3	11550422	11550552	AT3TE48075	.	-	ATENSPM10	En-Spm	DNA	130	short	81	medium	2039205	chromoarm	0	no-RdDM	no-CHH	.	.	.	.	.
Chr3	11550553	11551160	AT3TE48080	.	+	ATREP10B	Helitron	RC	607	short	491	high	2038597	chromoarm	0	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11551859	11551940	AT3TE48085	.	-	ATREP13	Helitron	RC	81	tiny	106	medium	2037817	chromoarm	490	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	11552014	11553785	AT3TE48090	.	-	ATHILA2	Gypsy	LTR	1771	short	413	high	2035972	chromoarm	645	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	11553793	11553851	AT3TE48095	.	-	ATHILA6B	Gypsy	LTR	58	tiny	134	medium	2035906	chromoarm	2424	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11556019	11556504	AT3TE48100	.	-	VANDAL1N1	MuDR	DNA	485	short	52	medium	2033253	chromoarm	4650	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11556514	11557383	AT3TE48105	.	-	VANDAL1	MuDR	DNA	869	short	80	medium	2032374	chromoarm	5145	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11558737	11560666	AT3TE48110	.	-	ATLINE2	L1	LINE	1929	short	138	medium	2029091	chromoarm	7368	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	11560666	11560689	AT3TE48115	.	-	ATLINEIII	L1	LINE	23	tiny	196	medium	2029068	chromoarm	9297	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	11560701	11569513	AT3TE48120	.	-	ATENSPM6	En-Spm	DNA	8812	long	151	medium	2020244	chromoarm	8954	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	11564467,11565746,11567358,11569051	11561407,11565085,11566931,11567821	-,-,-,-	transcript_id-"769f202c-3333-4b0e-a46c-7c6ace3513d7|7",transcript_id-"8d7bd85e-7782-4654-a87e-a686cdbc30aa|6",transcript_id-"31a4bc9b-fd7d-48db-960a-e61b13cabd59|7",transcript_id-"96cf42db-3375-4a42-8b72-8488ce1e8d29|8"
Chr3	11569513	11569588	AT3TE48125	.	-	ATLINE2	L1	LINE	75	tiny	138	medium	2020169	chromoarm	8879	no-RdDM	no-CHH	.	.	.	.	.
Chr3	11569591	11569746	AT3TE48130	.	+	ATENSPM11	En-Spm	DNA	155	short	47	low	2020011	chromoarm	8721	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	11570286	11575315	AT3TE48135	.	+	ATENSPM11	En-Spm	DNA	5029	long	47	low	2014442	chromoarm	3152	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	11575315	11575409	AT3TE48140	.	+	ATENSPM10	En-Spm	DNA	94	tiny	81	medium	2014348	chromoarm	3058	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	11575409	11575521	AT3TE48145	.	-	ATLINE1_3A	L1	LINE	112	short	160	medium	2014236	chromoarm	2946	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	11575521	11577530	AT3TE48150	.	+	ATENSPM11	En-Spm	DNA	2009	medium	47	low	2012227	chromoarm	937	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	11575657,11576617	11577251,11577251	+,+	transcript_id-"6c8f3130-18b0-4a84-ad1a-c20e7af9782d|3",transcript_id-"0673a2ab-cd9b-46b8-9024-555255c3a6c9|9"
Chr3	11577530	11577660	AT3TE48155	.	+	ATENSPM11	En-Spm	DNA	130	short	47	low	2012097	chromoarm	807	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11582343	11582479	AT3TE48165	.	+	ATGP3	Gypsy	LTR	136	short	60	medium	2007278	chromoarm	1743	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11582479	11585241	AT3TE48170	.	+	ATGP3	Gypsy	LTR	2762	medium	60	medium	2004516	chromoarm	1879	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	11587318	11588352	AT3TE48175	.	-	SIMPLEGUY1	Harbinger	DNA	1034	short	116	medium	2001405	chromoarm	1711	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11588352	11589530	AT3TE48180	.	-	ATREP1	Helitron	RC	1178	short	498	high	2000227	chromoarm	533	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	11589530	11589707	AT3TE48185	.	-	ATDNA2T9C	MuDR	DNA	177	short	242	high	2000050	chromoarm	356	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	11592457	11593297	AT3TE48195	.	+	ATREP3	Helitron	RC	840	short	1439	high	1996460	chromoarm	624	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11597404	11599821	AT3TE48205	.	-	Unassigned	.	Unassigned	2417	medium	.	low	1989936	chromoarm	327	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	11602484	11603489	AT3TE48215	.	-	SIMPLEGUY1	Harbinger	DNA	1005	short	116	medium	1986268	chromoarm	5407	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	11604046	11604066	AT3TE48220	.	-	ATLINEIII	L1	LINE	20	tiny	196	medium	1985691	chromoarm	6969	no-CHH	no-CHH	.	.	.	.	.
Chr3	11604066	11606606	AT3TE48225	.	-	ATLINEIII	L1	LINE	2540	medium	196	medium	1983151	chromoarm	5750	no-CHH	no-CHH	.	.	.	.	.
Chr3	11606973	11608180	AT3TE48230	.	-	ATHILA4	Gypsy	LTR	1207	short	250	high	1981577	chromoarm	4176	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	11608180	11608207	AT3TE48235	.	-	ATHILA4B_LTR	Gypsy	LTR	27	tiny	143	medium	1981550	chromoarm	4149	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	11608270	11609297	AT3TE48240	.	-	ATCOPIA44	Copia	LTR	1027	short	12	low	1980460	chromoarm	3059	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	11609297	11609351	AT3TE48245	.	-	ATCOPIA66	Copia	LTR	54	tiny	20	low	1980406	chromoarm	3005	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	11609456	11609698	AT3TE48250	.	-	ATCOPIA34	Copia	LTR	242	short	16	low	1980059	chromoarm	2658	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	11610372	11611237	AT3TE48255	.	-	ATHATN10	HAT	DNA	865	short	48	low	1978520	chromoarm	1119	no-RdDM	no-CHH	.	.	.	.	.
Chr3	11612103	11612346	AT3TE48260	.	-	ATHATN10	HAT	DNA	243	short	48	low	1977411	chromoarm	10	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11614683	11614733	AT3TE48265	.	+	HELITRONY1E	Helitron	RC	50	tiny	447	high	1975024	chromoarm	1997	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	11614733	11615497	AT3TE48270	.	+	HELITRONY3	Helitron	RC	764	short	1399	high	1974260	chromoarm	2047	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	11615497	11616456	AT3TE48275	.	+	ATREP3	Helitron	RC	959	short	1439	high	1973301	chromoarm	2811	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11617784	11617851	AT3TE48280	.	-	ATENSPM1A	En-Spm	DNA	67	tiny	77	medium	1971906	chromoarm	5098	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	11618613	11621527	AT3TE48285	.	+	ATIS112A	Harbinger	DNA	2914	medium	173	medium	1968230	chromoarm	5927	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	11619320	11619465	AT3TE48290	.	+	ATMU4	MuDR	DNA	145	short	14	low	1970292	chromoarm	6634	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	11621694	11621948	AT3TE48295	.	-	ATENSPM4	En-Spm	DNA	254	short	50	medium	1967809	chromoarm	9008	no-RdDM	no-CHH	.	.	.	.	.
Chr3	11621948	11622911	AT3TE48300	.	+	ATHILA5	Gypsy	LTR	963	short	131	medium	1966846	chromoarm	9262	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	11622911	11623774	AT3TE48305	.	+	ATHILA8B	Gypsy	LTR	863	short	78	medium	1965983	chromoarm	10225	no-RdDM	no-CHH	.	.	.	.	.
Chr3	11623864	11624035	AT3TE48310	.	-	HELITRON2	Helitron	RC	171	short	194	medium	1965722	chromoarm	11178	no-CHH	no-CHH	.	.	.	.	.
Chr3	11625619	11625834	AT3TE48315	.	-	ATHATN10	HAT	DNA	215	short	48	low	1963923	chromoarm	12933	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11625834	11625876	AT3TE48320	.	-	ATREP10D	Helitron	RC	42	tiny	1295	high	1963881	chromoarm	13148	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11625876	11626387	AT3TE48325	.	+	ATREP15	Helitron	RC	511	short	1003	high	1963370	chromoarm	13190	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11626387	11627221	AT3TE48330	.	+	BRODYAGA2	MuDR	DNA	834	short	525	high	1962536	chromoarm	13701	no-CHH	no-CHH	.	.	.	.	.
Chr3	11627235	11627479	AT3TE48335	.	-	HELITRONY1E	Helitron	RC	244	short	447	high	1962278	chromoarm	14549	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11630657	11630850	AT3TE48345	.	+	BRODYAGA2	MuDR	DNA	193	short	525	high	1958907	chromoarm	17620	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11632227	11632458	AT3TE48350	.	+	ATHILA5	Gypsy	LTR	231	short	131	medium	1957299	chromoarm	16012	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	11632458	11632493	AT3TE48355	.	+	ATHILA5	Gypsy	LTR	35	tiny	131	medium	1957264	chromoarm	15977	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	11632855	11634011	AT3TE48360	.	+	ATGP10	Gypsy	LTR	1156	short	165	medium	1955746	chromoarm	14459	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	11634011	11639062	AT3TE48365	.	+	ATGP1	Gypsy	LTR	5051	long	144	medium	1950695	chromoarm	9408	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	11639062	11639517	AT3TE48370	.	-	ATHILA4A	Gypsy	LTR	455	short	310	high	1950240	chromoarm	8953	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	11639525	11640168	AT3TE48375	.	+	ATLINE1A	L1	LINE	643	short	289	high	1949589	chromoarm	8302	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	11640168	11641612	AT3TE48380	.	+	ATLINE1A	L1	LINE	1444	short	289	high	1948145	chromoarm	6858	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11641614	11641647	AT3TE48385	.	-	HELITRONY1D	Helitron	RC	33	tiny	756	high	1948110	chromoarm	6823	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11641647	11642437	AT3TE48390	.	-	HELITRONY1B	Helitron	RC	790	short	414	high	1947320	chromoarm	6033	no-CHH	no-CHH	.	.	.	.	.
Chr3	11642780	11642891	AT3TE48395	.	+	META1	Copia	LTR	111	short	138	medium	1946866	chromoarm	5579	no-CHH	DCL3-RdDM	.	.	.	.	.
Chr3	11642891	11642915	AT3TE48400	.	+	META1	Copia	LTR	24	tiny	138	medium	1946842	chromoarm	5555	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11642950	11644141	AT3TE48405	.	+	ATCOPIA29	Copia	LTR	1191	short	19	low	1945616	chromoarm	4329	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11644460	11644984	AT3TE48410	.	+	ROMANIAT5	Copia	LTR	524	short	49	low	1944773	chromoarm	3486	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	11644984	11645240	AT3TE48415	.	+	META1	Copia	LTR	256	short	138	medium	1944517	chromoarm	3230	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	11645257	11645411	AT3TE48420	.	+	META1	Copia	LTR	154	short	138	medium	1944346	chromoarm	3059	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11645880	11646059	AT3TE48425	.	-	ATREP6	Helitron	RC	179	short	181	medium	1943698	chromoarm	2411	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	11646059	11647280	AT3TE48430	.	-	ATREP11	Helitron	RC	1221	short	841	high	1942477	chromoarm	1190	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	11647280	11647348	AT3TE48435	.	-	ATREP10B	Helitron	RC	68	tiny	491	high	1942409	chromoarm	1122	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	11647348	11647379	AT3TE48440	.	-	ATREP15	Helitron	RC	31	tiny	1003	high	1942378	chromoarm	1091	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	11647982	11648182	AT3TE48445	.	+	ATENSPM11	En-Spm	DNA	200	short	47	low	1941575	chromoarm	288	no-CHH	no-CHH	.	.	.	.	.
Chr3	11651905	11663688	AT3TE48455	.	+	ATLINEIII	L1	LINE	11783	long	196	medium	1926069	chromoarm	1340	PolIV-and-RDR6-RdDM	no-CHH	ExpressedAndAnnotated	11652922	11654707	+	transcript_id-"1c02dda7-4da9-4afe-aa9f-ac377f1f6158|11"
Chr3	11652696	11657744	AT3TE48460	.	+	ATCOPIA70	Copia	LTR	5048	long	8	low	1932013	chromoarm	2131	no-CHH	no-CHH	ExpressedAndAnnotated	11652922	11654707	+	transcript_id-"1c02dda7-4da9-4afe-aa9f-ac377f1f6158|11"
Chr3	11657864	11660632	AT3TE48465	.	-	VANDAL2N1	MuDR	DNA	2768	medium	51	medium	1929125	chromoarm	7299	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	11664740	11664901	AT3TE48475	.	+	ATLINE2	L1	LINE	161	short	138	medium	1924856	chromoarm	6839	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	11664968	11669787	AT3TE48480	.	+	ATCOPIA63	Copia	LTR	4819	medium	11	low	1919970	chromoarm	1953	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11669892	11670609	AT3TE48485	.	+	ATLINEIII	L1	LINE	717	short	196	medium	1919148	chromoarm	1131	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	11671257	11671428	AT3TE48490	.	+	ATLINE1_5	L1	LINE	171	short	91	medium	1918329	chromoarm	312	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11672113	11673239	AT3TE48495	.	+	ATREP10D	Helitron	RC	1126	short	1295	high	1916518	chromoarm	19	no-CHH	no-CHH	.	.	.	.	.
Chr3	11674069	11674508	AT3TE48500	.	-	ATENSPM3	En-Spm	DNA	439	short	98	medium	1915249	chromoarm	1975	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	11674914	11674940	AT3TE48505	.	-	BRODYAGA1A	MuDR	DNA	26	tiny	586	high	1914817	chromoarm	2820	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	11674940	11675948	AT3TE48510	.	-	BRODYAGA1A	MuDR	DNA	1008	short	586	high	1913809	chromoarm	2846	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11676002	11676240	AT3TE48515	.	+	ATENSPM5	En-Spm	DNA	238	short	111	medium	1913517	chromoarm	3908	no-RdDM	no-CHH	.	.	.	.	.
Chr3	11676240	11678189	AT3TE48520	.	+	ATENSPM6	En-Spm	DNA	1949	short	151	medium	1911568	chromoarm	4146	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	11678189	11678764	AT3TE48525	.	+	ATCOPIA95	Copia	LTR	575	short	72	medium	1910993	chromoarm	6095	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	11678764	11679153	AT3TE48530	.	+	ATCOPIA97	Copia	LTR	389	short	10	low	1910604	chromoarm	6670	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	11679153	11683564	AT3TE48535	.	+	ATCOPIA97	Copia	LTR	4411	medium	10	low	1906193	chromoarm	7059	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	11683564	11689821	AT3TE48540	.	+	ATCOPIA95	Copia	LTR	6257	long	72	medium	1899936	chromoarm	3273	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	11689470,11689470	11689716,11689794	+,+	transcript_id-"8b62ea44-ec48-442c-a2f2-bcb5ffaa3b10|3",transcript_id-"30256893-63ce-476c-93e1-ad74ac8ebb87|7"
Chr3	11689822	11691134	AT3TE48545	.	+	ATENSPM5	En-Spm	DNA	1312	short	111	medium	1898623	chromoarm	1960	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	11691138	11691161	AT3TE48550	.	+	ATENSPM9	En-Spm	DNA	23	tiny	97	medium	1898596	chromoarm	1933	no-CHH	RDR6-RdDM	.	.	.	.	.
Chr3	11691623	11692551	AT3TE48555	.	+	Unassigned	.	Unassigned	928	short	.	low	1897206	chromoarm	543	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	11693134	11693278	AT3TE48560	.	+	ATENSPM5	En-Spm	DNA	144	short	111	medium	1896479	chromoarm	0	no-RdDM	no-CHH	.	.	.	.	.
Chr3	11693892	11693944	AT3TE48565	.	-	ATENSPM7	En-Spm	DNA	52	tiny	74	medium	1895813	chromoarm	270	RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11693944	11694191	AT3TE48570	.	-	ATREP5	Helitron	RC	247	short	624	high	1895566	chromoarm	322	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	11694191	11694220	AT3TE48575	.	-	HELITRONY1B	Helitron	RC	29	tiny	414	high	1895537	chromoarm	569	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11694220	11695820	AT3TE48580	.	-	HELITRONY1D	Helitron	RC	1600	short	756	high	1893937	chromoarm	0	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	11695820	11695894	AT3TE48585	.	-	HELITRONY1B	Helitron	RC	74	tiny	414	high	1893863	chromoarm	0	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	11697283	11702259	AT3TE48590	.	+	ATCOPIA16	Copia	LTR	4976	medium	12	low	1887498	chromoarm	512	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	11701946	11702237	+	transcript_id-"6e162556-3808-4720-b1d0-c0a9851ffd5b|3"
Chr3	11702259	11702322	AT3TE48595	.	+	ATCOPIA89	Copia	LTR	63	tiny	12	low	1887435	chromoarm	5488	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	11703423	11703501	AT3TE48600	.	-	ATENSPM2	En-Spm	DNA	78	tiny	114	medium	1886256	chromoarm	5059	no-RdDM	no-CHH	.	.	.	.	.
Chr3	11703501	11703830	AT3TE48605	.	+	ARNOLD3	MuDR	DNA	329	short	45	low	1885927	chromoarm	4730	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11703832	11704014	AT3TE48610	.	-	HELITRONY1B	Helitron	RC	182	short	414	high	1885743	chromoarm	4546	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11704284	11704564	AT3TE48615	.	+	ARNOLD3	MuDR	DNA	280	short	45	low	1885193	chromoarm	3996	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11704566	11704709	AT3TE48620	.	-	HELITRONY1B	Helitron	RC	143	short	414	high	1885048	chromoarm	3851	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11705018	11705078	AT3TE48625	.	-	ATENSPM2	En-Spm	DNA	60	tiny	114	medium	1884679	chromoarm	3482	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	11705078	11705307	AT3TE48630	.	+	ARNOLD3	MuDR	DNA	229	short	45	low	1884450	chromoarm	3253	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11705309	11705495	AT3TE48635	.	-	HELITRONY1B	Helitron	RC	186	short	414	high	1884262	chromoarm	3065	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11705550	11705696	AT3TE48640	.	-	ATENSPM4	En-Spm	DNA	146	short	50	medium	1884061	chromoarm	2864	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	11705696	11706028	AT3TE48645	.	+	ARNOLD4	MuDR	DNA	332	short	23	low	1883729	chromoarm	2532	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11706030	11706181	AT3TE48650	.	-	HELITRONY1A	Helitron	RC	151	short	271	high	1883576	chromoarm	2379	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11706455	11706785	AT3TE48655	.	+	ARNOLD3	MuDR	DNA	331	short	45	low	1882972	chromoarm	1775	.	.	.	.	.	.	.
Chr3	11706785	11706930	AT3TE48660	.	-	HELITRONY1A	Helitron	RC	145	short	271	high	1882827	chromoarm	1630	no-CHH	no-CHH	.	.	.	.	.
Chr3	11706945	11707176	AT3TE48665	.	-	ATENSPM2	En-Spm	DNA	231	short	114	medium	1882581	chromoarm	1384	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11707176	11707506	AT3TE48670	.	+	ARNOLD3	MuDR	DNA	330	short	45	low	1882251	chromoarm	1054	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11707508	11707690	AT3TE48675	.	-	HELITRONY1B	Helitron	RC	182	short	414	high	1882067	chromoarm	870	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11707703	11707932	AT3TE48680	.	-	ATENSPM2	En-Spm	DNA	229	short	114	medium	1881825	chromoarm	628	no-RdDM	no-CHH	.	.	.	.	.
Chr3	11707933	11708263	AT3TE48685	.	+	ARNOLD3	MuDR	DNA	331	short	45	low	1881494	chromoarm	297	.	.	.	.	.	.	.
Chr3	11708263	11708408	AT3TE48690	.	-	HELITRONY1A	Helitron	RC	145	short	271	high	1881349	chromoarm	152	no-CHH	no-RdDM	.	.	.	.	.
Chr3	11708654	11708984	AT3TE48695	.	+	ARNOLD3	MuDR	DNA	330	short	45	low	1880773	chromoarm	0	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11708984	11709159	AT3TE48700	.	-	HELITRONY1A	Helitron	RC	175	short	271	high	1880598	chromoarm	0	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11709178	11709417	AT3TE48705	.	-	ATENSPM2	En-Spm	DNA	239	short	114	medium	1880340	chromoarm	0	RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr3	11709417	11709777	AT3TE48710	.	+	ARNOLD4	MuDR	DNA	360	short	23	low	1879980	chromoarm	0	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11709777	11709922	AT3TE48715	.	-	HELITRONY1A	Helitron	RC	145	short	271	high	1879835	chromoarm	0	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11710169	11710499	AT3TE48720	.	+	ARNOLD3	MuDR	DNA	330	short	45	low	1879258	chromoarm	0	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11710499	11710672	AT3TE48725	.	-	HELITRONY1A	Helitron	RC	173	short	271	high	1879085	chromoarm	0	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11710694	11710923	AT3TE48730	.	-	ATENSPM2	En-Spm	DNA	229	short	114	medium	1878834	chromoarm	0	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11710923	11711253	AT3TE48735	.	+	ARNOLD3	MuDR	DNA	330	short	45	low	1878504	chromoarm	0	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11711254	11711406	AT3TE48740	.	-	HELITRONY1B	Helitron	RC	152	short	414	high	1878351	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11711780	11711843	AT3TE48745	.	-	HELITRONY1A	Helitron	RC	63	tiny	271	high	1877914	chromoarm	0	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	11711843	11712232	AT3TE48750	.	-	ATENSPM4	En-Spm	DNA	389	short	50	medium	1877525	chromoarm	0	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	11713255	11713397	AT3TE48755	.	-	VANDAL5	MuDR	DNA	142	short	85	medium	1876360	chromoarm	227	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr3	11713397	11713428	AT3TE48760	.	-	VANDAL5	MuDR	DNA	31	tiny	85	medium	1876329	chromoarm	369	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	11713730	11714166	AT3TE48765	.	-	VANDAL5A	MuDR	DNA	436	short	56	medium	1875591	chromoarm	702	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	11714166	11715294	AT3TE48770	.	-	VANDAL5	MuDR	DNA	1128	short	85	medium	1874463	chromoarm	1138	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	11715486	11715820	AT3TE48775	.	-	ATREP11	Helitron	RC	334	short	841	high	1873937	chromoarm	1792	no-CHH	no-CHH	.	.	.	.	.
Chr3	11715820	11715868	AT3TE48780	.	+	ATREP3	Helitron	RC	48	tiny	1439	high	1873889	chromoarm	1744	no-CHH	no-CHH	.	.	.	.	.
Chr3	11715868	11716815	AT3TE48785	.	+	ATREP15	Helitron	RC	947	short	1003	high	1872942	chromoarm	797	no-CHH	no-CHH	.	.	.	.	.
Chr3	11716829	11717395	AT3TE48790	.	-	ATREP15	Helitron	RC	566	short	1003	high	1872362	chromoarm	217	no-CHH	no-CHH	.	.	.	.	.
Chr3	11717395	11717519	AT3TE48795	.	+	HELITRONY1B	Helitron	RC	124	short	414	high	1872238	chromoarm	93	no-CHH	no-CHH	.	.	.	.	.
Chr3	11717944	11717964	AT3TE48800	.	-	ATREP10D	Helitron	RC	20	tiny	1295	high	1871793	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	11717964	11719067	AT3TE48805	.	+	ATDNA2T9C	MuDR	DNA	1103	short	242	high	1870690	chromoarm	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	11719067	11719504	AT3TE48810	.	-	ATLINEIII	L1	LINE	437	short	196	medium	1870253	chromoarm	591	no-CHH	no-CHH	.	.	.	.	.
Chr3	11722136	11723023	AT3TE48820	.	-	ATREP10D	Helitron	RC	887	short	1295	high	1866734	chromoarm	33	no-CHH	no-CHH	.	.	.	.	.
Chr3	11723023	11724227	AT3TE48825	.	-	ATGP1	Gypsy	LTR	1204	short	144	medium	1865530	chromoarm	920	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	11724100	11723162	-	transcript_id-"a1512ce3-f4a9-4ced-80e8-f2e7bba1c73a|4"
Chr3	11724505	11725115	AT3TE48830	.	-	ATHATN6	HAT	DNA	610	short	43	low	1864642	chromoarm	2402	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	11725466	11726267	AT3TE48835	.	+	ATREP5	Helitron	RC	801	short	624	high	1863490	chromoarm	1944	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	11726288	11727555	AT3TE48840	.	+	HELITRONY3	Helitron	RC	1267	short	1399	high	1862202	chromoarm	656	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11727555	11727622	AT3TE48845	.	-	SIMPLEHAT2	HAT	DNA	67	tiny	73	medium	1862135	chromoarm	589	no-CHH	no-CHH	.	.	.	.	.
Chr3	11733307	11734882	AT3TE48860	.	+	ATLINE1_1	L1	LINE	1575	short	61	medium	1854875	chromoarm	2166	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	11735581	11736392	AT3TE48865	.	-	ATLINE1A	L1	LINE	811	short	289	high	1853365	chromoarm	656	no-RdDM	no-CHH	.	.	.	.	.
Chr3	11739406	11740037	AT3TE48875	.	+	ATDNA12T3_2	.	DNA	631	short	660	high	1849720	chromoarm	559	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	11740085	11740380	AT3TE48880	.	+	ATDNA12T3_2	.	DNA	295	short	660	high	1849377	chromoarm	1238	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11740668	11740972	AT3TE48885	.	-	HELITRONY3	Helitron	RC	304	short	1399	high	1848785	chromoarm	1821	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11740972	11741561	AT3TE48890	.	-	ARNOLDY2	MuDR	DNA	589	short	288	high	1848196	chromoarm	2125	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11741561	11743123	AT3TE48895	.	+	ARNOLDY2	MuDR	DNA	1562	short	288	high	1846634	chromoarm	2175	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11743123	11743211	AT3TE48900	.	+	HELITRONY3	Helitron	RC	88	tiny	1399	high	1846546	chromoarm	2087	no-CHH	no-CHH	.	.	.	.	.
Chr3	11743224	11744059	AT3TE48905	.	+	ATHILA8A	Gypsy	LTR	835	short	97	medium	1845698	chromoarm	1239	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	11745514	11746336	AT3TE48910	.	-	BRODYAGA2	MuDR	DNA	822	short	525	high	1843421	chromoarm	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	11748635	11748773	AT3TE48915	.	-	VANDAL16	MuDR	DNA	138	short	42	low	1840984	chromoarm	2154	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11749951	11751261	AT3TE48920	.	+	ATREP10D	Helitron	RC	1310	short	1295	high	1838496	chromoarm	3470	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	11751262	11751404	AT3TE48925	.	+	ATREP19	.	DNA	143	short	189	medium	1838353	chromoarm	4780	.	.	.	.	.	.	.
Chr3	11751404	11751873	AT3TE48930	.	+	ATREP10D	Helitron	RC	469	short	1295	high	1837884	chromoarm	4923	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	11758303	11758470	AT3TE48960	.	+	ATMU4	MuDR	DNA	167	short	14	low	1831287	chromoarm	11822	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	11761176	11761245	AT3TE48970	.	-	HELITRON4	Helitron	RC	70	tiny	199	medium	1828512	chromoarm	14694	.	.	.	.	.	.	.
Chr3	11761245	11762165	AT3TE48975	.	+	ATREP10D	Helitron	RC	920	short	1295	high	1827592	chromoarm	14764	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	11762165	11762519	AT3TE48980	.	+	HELITRONY1A	Helitron	RC	354	short	271	high	1827238	chromoarm	15684	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	11762519	11762559	AT3TE48985	.	+	HELITRONY1A	Helitron	RC	40	tiny	271	high	1827198	chromoarm	16038	no-CHH	no-RdDM	.	.	.	.	.
Chr3	11762559	11765837	AT3TE48990	.	-	ARNOLDY1	MuDR	DNA	3278	medium	237	high	1823920	chromoarm	16078	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11765839	11766710	AT3TE48995	.	-	HELITRONY3	Helitron	RC	871	short	1399	high	1823047	chromoarm	18279	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	11766710	11768299	AT3TE49000	.	-	HELITRON3	Helitron	RC	1589	short	53	medium	1821458	chromoarm	16690	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	11768299	11768451	AT3TE49005	.	-	ATENSPM6	En-Spm	DNA	152	short	151	medium	1821306	chromoarm	16538	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	11768750	11768779	AT3TE49010	.	-	HELITRON3	Helitron	RC	29	tiny	53	medium	1820978	chromoarm	16210	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	11768779	11771929	AT3TE49015	.	-	HELITRON1	Helitron	RC	3150	medium	130	medium	1817828	chromoarm	13060	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	11771942	11772390	AT3TE49020	.	-	HELITRON5	Helitron	RC	448	short	56	medium	1817367	chromoarm	12599	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	11775582	11776116	AT3TE49030	.	-	ATENSPM9	En-Spm	DNA	534	short	97	medium	1813641	chromoarm	8873	no-RdDM	no-CHH	.	.	.	.	.
Chr3	11778363	11778647	AT3TE49035	.	-	BRODYAGA1A	MuDR	DNA	284	short	586	high	1811110	chromoarm	6342	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	11780517	11780947	AT3TE49040	.	-	ATHAT10	HAT	DNA	430	short	35	low	1808810	chromoarm	4042	no-CHH	no-CHH	.	.	.	.	.
Chr3	11782049	11783741	AT3TE49045	.	-	HELITRONY2	Helitron	RC	1692	short	198	medium	1806016	chromoarm	1248	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	11783750	11783808	AT3TE49050	.	-	ATGP8	Gypsy	LTR	58	tiny	92	medium	1805949	chromoarm	1181	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11783808	11784573	AT3TE49055	.	-	ATGP8	Gypsy	LTR	765	short	92	medium	1805184	chromoarm	416	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	11785404	11785537	AT3TE49060	.	-	ATGP8	Gypsy	LTR	133	short	92	medium	1804220	chromoarm	27	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11785813	11785941	AT3TE49065	.	-	HELITRON5	Helitron	RC	128	short	56	medium	1803816	chromoarm	436	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	11788281	11788337	AT3TE49070	.	-	ATTIRX1B	.	DNA	56	tiny	44	low	1801420	chromoarm	2904	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	11789804	11790740	AT3TE49075	.	-	ATREP15	Helitron	RC	936	short	1003	high	1799017	chromoarm	4427	no-CHH	no-CHH	.	.	.	.	.
Chr3	11793465	11793549	AT3TE49085	.	-	ATMU6N1	MuDR	DNA	84	tiny	39	low	1796208	chromoarm	8088	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11793558	11798454	AT3TE49090	.	+	ATMU5	MuDR	DNA	4896	medium	24	low	1791303	chromoarm	8181	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	11798454	11798508	AT3TE49095	.	+	ARNOLD1	MuDR	DNA	54	tiny	39	low	1791249	chromoarm	12358	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11799039	11799138	AT3TE49100	.	-	ATREP4	Helitron	RC	99	tiny	832	high	1790619	chromoarm	11728	no-CHH	no-CHH	.	.	.	.	.
Chr3	11799138	11800524	AT3TE49105	.	+	ATREP10D	Helitron	RC	1386	short	1295	high	1789233	chromoarm	10342	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	11800779	11801357	AT3TE49110	.	+	TSCL	.	LINE?	578	short	81	medium	1788400	chromoarm	9509	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	11801357	11801685	AT3TE49115	.	+	BRODYAGA1A	MuDR	DNA	328	short	586	high	1788072	chromoarm	9181	no-RdDM	no-CHH	.	.	.	.	.
Chr3	11805214	11805375	AT3TE49125	.	+	ATDNA12T3_2	.	DNA	161	short	660	high	1784382	chromoarm	5491	no-CHH	no-CHH	.	.	.	.	.
Chr3	11805375	11806638	AT3TE49130	.	+	ATREP4	Helitron	RC	1263	short	832	high	1783119	chromoarm	4228	no-CHH	no-CHH	.	.	.	.	.
Chr3	11807414	11807703	AT3TE49135	.	+	ATREP4	Helitron	RC	289	short	832	high	1782054	chromoarm	3163	no-CHH	no-CHH	.	.	.	.	.
Chr3	11807703	11809062	AT3TE49140	.	-	ATREP10A	Helitron	RC	1359	short	279	high	1780695	chromoarm	1804	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11809062	11809097	AT3TE49145	.	+	ATREP6	Helitron	RC	35	tiny	181	medium	1780660	chromoarm	1769	PolIV-and-RDR6-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	11809369	11810663	AT3TE49150	.	-	HELITRONY1E	Helitron	RC	1294	short	447	high	1779094	chromoarm	203	no-CHH	no-CHH	.	.	.	.	.
Chr3	11810663	11810694	AT3TE49155	.	-	ATREP4	Helitron	RC	31	tiny	832	high	1779063	chromoarm	172	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	11815360	11815457	AT3TE49165	.	-	ATHILA8B	Gypsy	LTR	97	tiny	78	medium	1774300	chromoarm	1851	no-CHH	no-CHH	.	.	.	.	.
Chr3	11815772	11816971	AT3TE49170	.	+	ATLINE1A	L1	LINE	1199	short	289	high	1772786	chromoarm	2263	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11819287	11819852	AT3TE49175	.	-	HELITRON4	Helitron	RC	565	short	199	medium	1769905	chromoarm	5778	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	11821468	11821650	AT3TE49180	.	+	ATENSPM6	En-Spm	DNA	182	short	151	medium	1768107	chromoarm	7959	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	11821650	11821684	AT3TE49185	.	+	VANDAL17	MuDR	DNA	34	tiny	178	medium	1768073	chromoarm	8141	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	11821684	11822626	AT3TE49190	.	+	ATIS112A	Harbinger	DNA	942	short	173	medium	1767131	chromoarm	8175	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	11821465,11821465	11822531,11825359	+,+	transcript_id-"9ecf8be7-b7b1-4c5b-a3e5-fb36432a31a7|27",transcript_id-"faeac7df-98c5-4718-8c0c-d25e595dab4c|4"
Chr3	11822626	11823035	AT3TE49195	.	+	HELITRONY3	Helitron	RC	409	short	1399	high	1766722	chromoarm	9117	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	11823035	11823271	AT3TE49200	.	-	ATREP10A	Helitron	RC	236	short	279	high	1766486	chromoarm	9526	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11823271	11823303	AT3TE49205	.	-	ATREP3	Helitron	RC	32	tiny	1439	high	1766454	chromoarm	9762	no-CHH	no-CHH	.	.	.	.	.
Chr3	11823303	11825940	AT3TE49210	.	+	ATREP4	Helitron	RC	2637	medium	832	high	1763817	chromoarm	9794	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	11821465	11825359	+	transcript_id-"faeac7df-98c5-4718-8c0c-d25e595dab4c|4"
Chr3	11825940	11826028	AT3TE49215	.	-	ATREP4	Helitron	RC	88	tiny	832	high	1763729	chromoarm	12431	RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11826034	11826060	AT3TE49220	.	-	ATREP3	Helitron	RC	26	tiny	1439	high	1763697	chromoarm	12506	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11826060	11827509	AT3TE49225	.	+	HELITRONY3	Helitron	RC	1449	short	1399	high	1762248	chromoarm	11057	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11832065	11832197	AT3TE49235	.	-	HELITRONY1E	Helitron	RC	132	short	447	high	1757560	chromoarm	6369	no-CHH	no-CHH	.	.	.	.	.
Chr3	11832197	11832636	AT3TE49240	.	-	HELITRONY3A	Helitron	RC	439	short	49	low	1757121	chromoarm	5930	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	11834425	11834703	AT3TE49245	.	+	HELITRONY1C	Helitron	RC	278	short	120	medium	1755054	chromoarm	3863	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	11835393	11835533	AT3TE49250	.	-	ATTIRTA1	Tc1	DNA	140	short	95	medium	1754224	chromoarm	3033	no-RdDM	no-CHH	.	.	.	.	.
Chr3	11836760	11837291	AT3TE49255	.	+	ATREP10B	Helitron	RC	531	short	491	high	1752466	chromoarm	1275	no-CHH	no-CHH	.	.	.	.	.
Chr3	11840593	11841374	AT3TE49265	.	+	ATCOPIA65	Copia	LTR	781	short	34	low	1748383	chromoarm	280	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	11841374	11841418	AT3TE49270	.	+	ATCOPIA64	Copia	LTR	44	tiny	13	low	1748339	chromoarm	1061	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	11842039	11844720	AT3TE49275	.	-	ATGP7	Gypsy	LTR	2681	medium	47	low	1745037	chromoarm	1726	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	11846092	11846358	AT3TE49280	.	+	ATCOPIA64	Copia	LTR	266	short	13	low	1743399	chromoarm	5779	no-CHH	no-CHH	.	.	.	.	.
Chr3	11846358	11847378	AT3TE49285	.	+	ATCOPIA54	Copia	LTR	1020	short	18	low	1742379	chromoarm	6045	no-CHH	no-CHH	.	.	.	.	.
Chr3	11847378	11847468	AT3TE49290	.	+	ATCOPIA65	Copia	LTR	90	tiny	34	low	1742289	chromoarm	7065	no-CHH	no-CHH	.	.	.	.	.
Chr3	11847468	11848453	AT3TE49295	.	+	ATREP10B	Helitron	RC	985	short	491	high	1741304	chromoarm	7155	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11848453	11848858	AT3TE49300	.	+	ATREP10D	Helitron	RC	405	short	1295	high	1740899	chromoarm	8140	no-RdDM	no-CHH	.	.	.	.	.
Chr3	11850102	11850192	AT3TE49305	.	+	HELITRONY3	Helitron	RC	90	tiny	1399	high	1739565	chromoarm	9789	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	11850192	11851673	AT3TE49310	.	+	ATREP3	Helitron	RC	1481	short	1439	high	1738084	chromoarm	9879	no-CHH	no-CHH	.	.	.	.	.
Chr3	11851673	11851694	AT3TE49315	.	+	HELITRONY1B	Helitron	RC	21	tiny	414	high	1738063	chromoarm	11360	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11851824	11851922	AT3TE49320	.	+	ATREP10B	Helitron	RC	98	tiny	491	high	1737835	chromoarm	11511	no-RdDM	no-CHH	.	.	.	.	.
Chr3	11851924	11852741	AT3TE49325	.	-	ATDNA12T3_2	.	DNA	817	short	660	high	1737016	chromoarm	11611	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11852742	11853069	AT3TE49330	.	+	ATREP10A	Helitron	RC	327	short	279	high	1736688	chromoarm	12429	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11853069	11853138	AT3TE49335	.	+	ATREP10D	Helitron	RC	69	tiny	1295	high	1736619	chromoarm	12756	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11853140	11856592	AT3TE49340	.	+	ATHILA4C	Gypsy	LTR	3452	medium	206	high	1733165	chromoarm	12827	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	11855493	11855564	AT3TE49345	.	+	ATHILA4A	Gypsy	LTR	71	tiny	310	high	1734193	chromoarm	15180	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	11856592	11856699	AT3TE49350	.	+	ATHILA4A	Gypsy	LTR	107	short	310	high	1733058	chromoarm	16279	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	11856699	11858051	AT3TE49355	.	+	ATHILA4A	Gypsy	LTR	1352	short	310	high	1731706	chromoarm	16386	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	11858051	11859203	AT3TE49360	.	+	ATHILA4B_LTR	Gypsy	LTR	1152	short	143	medium	1730554	chromoarm	17738	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	11859218	11859835	AT3TE49365	.	+	ATHILA4A	Gypsy	LTR	617	short	310	high	1729922	chromoarm	18030	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11859835	11859891	AT3TE49370	.	+	ATHILA4A	Gypsy	LTR	56	tiny	310	high	1729866	chromoarm	17974	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11860052	11860297	AT3TE49375	.	-	ATGP8	Gypsy	LTR	245	short	92	medium	1729460	chromoarm	17568	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	11861842	11861865	AT3TE49380	.	+	ATREP10C	Helitron	RC	23	tiny	123	medium	1727892	chromoarm	16000	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11861865	11862257	AT3TE49385	.	+	ATREP10C	Helitron	RC	392	short	123	medium	1727500	chromoarm	15608	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr3	11862335	11862827	AT3TE49390	.	+	BOMZH1	MuDR	DNA	492	short	28	low	1726930	chromoarm	15038	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11863213	11864420	AT3TE49395	.	-	ATREP8	Helitron	RC	1207	short	75	medium	1725337	chromoarm	13445	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11865584	11865659	AT3TE49400	.	+	ATLANTYS1	Gypsy	LTR	75	tiny	153	medium	1724098	chromoarm	12206	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11866124	11866305	AT3TE49405	.	+	TAT1_ATH	Gypsy	LTR	181	short	87	medium	1723452	chromoarm	11560	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	11868682	11869883	AT3TE49415	.	-	ATHILA4B_LTR	Gypsy	LTR	1201	short	143	medium	1719874	chromoarm	7982	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11869893	11870727	AT3TE49420	.	+	ATENSPM9	En-Spm	DNA	834	short	97	medium	1719030	chromoarm	7138	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	11871893	11872321	AT3TE49425	.	+	TAT1_ATH	Gypsy	LTR	428	short	87	medium	1717436	chromoarm	5544	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	11872720	11875280	AT3TE49430	.	+	ATLANTYS1	Gypsy	LTR	2560	medium	153	medium	1714477	chromoarm	2585	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	11875280	11875349	AT3TE49435	.	+	ATLANTYS2	Gypsy	LTR	69	tiny	179	medium	1714408	chromoarm	2516	no-CHH	no-RdDM	.	.	.	.	.
Chr3	11875590	11875724	AT3TE49440	.	+	ATLANTYS3	Gypsy	LTR	134	short	142	medium	1714033	chromoarm	2141	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	11875724	11876874	AT3TE49445	.	+	ATLANTYS2	Gypsy	LTR	1150	short	179	medium	1712883	chromoarm	991	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	11883805	11885981	AT3TE49470	.	+	ATLANTYS1	Gypsy	LTR	2176	medium	153	medium	1703776	chromoarm	180	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11885988	11886138	AT3TE49475	.	+	ATREP10B	Helitron	RC	150	short	491	high	1703619	chromoarm	2082	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11886138	11886851	AT3TE49480	.	+	HELITRONY1C	Helitron	RC	713	short	120	medium	1702906	chromoarm	1369	no-RdDM	no-CHH	.	.	.	.	.
Chr3	11886851	11887067	AT3TE49485	.	+	ATREP15	Helitron	RC	216	short	1003	high	1702690	chromoarm	1153	no-CHH	no-CHH	.	.	.	.	.
Chr3	11888668	11888724	AT3TE49490	.	-	ATREP10A	Helitron	RC	56	tiny	279	high	1701033	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	11888724	11889203	AT3TE49495	.	+	HELITRONY1A	Helitron	RC	479	short	271	high	1700554	chromoarm	27	no-CHH	no-CHH	.	.	.	.	.
Chr3	11889203	11890560	AT3TE49500	.	+	ARNOLDY1	MuDR	DNA	1357	short	237	high	1699197	chromoarm	506	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	11890560	11890623	AT3TE49505	.	-	ARNOLDY1	MuDR	DNA	63	tiny	237	high	1699134	chromoarm	1863	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr3	11890640	11892103	AT3TE49510	.	+	VANDAL18	MuDR	DNA	1463	short	14	low	1697654	chromoarm	1943	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	11892104	11892342	AT3TE49515	.	+	ATREP4	Helitron	RC	239	short	832	high	1697415	chromoarm	3406	.	.	.	.	.	.	.
Chr3	11893159	11894212	AT3TE49520	.	-	ATHILA4A	Gypsy	LTR	1053	short	310	high	1695545	chromoarm	4462	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11895890	11896083	AT3TE49525	.	-	ATDNA1T9A	MuDR	DNA	193	short	36	low	1693674	chromoarm	7193	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	11896223	11896854	AT3TE49530	.	-	ATGP8	Gypsy	LTR	631	short	92	medium	1692903	chromoarm	7526	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11898255	11899184	AT3TE49535	.	+	ATREP10D	Helitron	RC	929	short	1295	high	1690573	chromoarm	9558	no-RdDM	no-CHH	.	.	.	.	.
Chr3	11899788	11900078	AT3TE49540	.	-	HELITRONY3	Helitron	RC	290	short	1399	high	1689679	chromoarm	9040	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	11900078	11901962	AT3TE49545	.	+	ATHILA6B	Gypsy	LTR	1884	short	134	medium	1687795	chromoarm	7156	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	11900806	11900921	+	transcript_id-"a687e74e-cfc1-4893-a62b-ec20a4357482|7"
Chr3	11902722	11902744	AT3TE49550	.	-	ATCOPIA95	Copia	LTR	22	tiny	72	medium	1687013	chromoarm	6374	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	11902744	11902886	AT3TE49555	.	-	ATCOPIA95	Copia	LTR	142	short	72	medium	1686871	chromoarm	6232	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	11908324	11908652	AT3TE49570	.	-	BRODYAGA1A	MuDR	DNA	328	short	586	high	1681105	chromoarm	466	no-CHH	no-CHH	.	.	.	.	.
Chr3	11911757	11912172	AT3TE49580	.	-	ATHATN1	HAT	DNA	415	short	69	medium	1677585	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	11917838	11917919	AT3TE49600	.	-	ATREP4	Helitron	RC	81	tiny	832	high	1671838	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	11917919	11918527	AT3TE49605	.	-	ATHPOGON1	Pogo	DNA	608	short	174	medium	1671230	chromoarm	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	11918527	11918584	AT3TE49610	.	+	ATREP4	Helitron	RC	57	tiny	832	high	1671173	chromoarm	0	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr3	11924589	11924852	AT3TE49640	.	-	ARNOLDY2	MuDR	DNA	263	short	288	high	1664905	chromoarm	335	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	11926374	11926777	AT3TE49645	.	+	ATHILA4D_LTR	Gypsy	LTR	403	short	106	medium	1662980	chromoarm	2120	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11927771	11927865	AT3TE49650	.	+	HELITRONY1A	Helitron	RC	94	tiny	271	high	1661892	chromoarm	3421	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	11927865	11927923	AT3TE49655	.	+	HELITRONY1B	Helitron	RC	58	tiny	414	high	1661834	chromoarm	3363	PolIV-and-RDR6-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	11927923	11928407	AT3TE49660	.	+	HELITRONY1B	Helitron	RC	484	short	414	high	1661350	chromoarm	2879	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	11928407	11928692	AT3TE49665	.	+	HELITRON5	Helitron	RC	285	short	56	medium	1661065	chromoarm	2594	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	11928692	11929581	AT3TE49670	.	+	HELITRON1	Helitron	RC	889	short	130	medium	1660176	chromoarm	1705	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	11929899	11930075	AT3TE49675	.	+	HELITRONY1A	Helitron	RC	176	short	271	high	1659682	chromoarm	1211	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	11930075	11930539	AT3TE49680	.	+	HELITRONY1E	Helitron	RC	464	short	447	high	1659218	chromoarm	747	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11931314	11932095	AT3TE49685	.	-	ATDNA12T3_2	.	DNA	781	short	660	high	1657662	chromoarm	0	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11935572	11935635	AT3TE49695	.	-	ATENSPM1A	En-Spm	DNA	63	tiny	77	medium	1654122	chromoarm	878	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	11935635	11937294	AT3TE49700	.	-	ATENSPM4	En-Spm	DNA	1659	short	50	medium	1652463	chromoarm	941	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	11937294	11937344	AT3TE49705	.	-	ATGP8	Gypsy	LTR	50	tiny	92	medium	1652413	chromoarm	2600	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	11937344	11937545	AT3TE49710	.	-	ATGP8	Gypsy	LTR	201	short	92	medium	1652212	chromoarm	2650	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	11937545	11939163	AT3TE49715	.	+	ATHILA0_I	Gypsy	LTR	1618	short	138	medium	1650594	chromoarm	2851	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	11939165	11940170	AT3TE49720	.	-	ATGP8	Gypsy	LTR	1005	short	92	medium	1649587	chromoarm	4471	no-RdDM	no-RdDM	ExpressedAndAnnotated	11940987	11939687	-	transcript_id-"1ca4cfd4-332d-4161-b5b4-998cabe232c7|4"
Chr3	11940170	11945048	AT3TE49725	.	-	ATENSPM2	En-Spm	DNA	4878	medium	114	medium	1644709	chromoarm	5476	no-RdDM	no-RdDM	ExpressedAndAnnotated	11940987	11939687	-	transcript_id-"1ca4cfd4-332d-4161-b5b4-998cabe232c7|4"
Chr3	11945048	11945531	AT3TE49730	.	-	ATENSPM2	En-Spm	DNA	483	short	114	medium	1644226	chromoarm	10354	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	11945531	11945555	AT3TE49735	.	-	ATENSPM1A	En-Spm	DNA	24	tiny	77	medium	1644202	chromoarm	10837	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	11948617	11948977	AT3TE49745	.	-	ATLINE1A	L1	LINE	360	short	289	high	1640780	chromoarm	7648	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11949430	11949755	AT3TE49750	.	-	ATHILA8A	Gypsy	LTR	325	short	97	medium	1640002	chromoarm	6870	no-CHH	no-CHH	.	.	.	.	.
Chr3	11950122	11950397	AT3TE49755	.	-	ATHILA8B	Gypsy	LTR	275	short	78	medium	1639360	chromoarm	6228	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	11950863	11951181	AT3TE49760	.	+	ATREP10B	Helitron	RC	318	short	491	high	1638576	chromoarm	5444	no-CHH	no-CHH	.	.	.	.	.
Chr3	11953190	11953352	AT3TE49765	.	+	ATMUNX1	MuDR	DNA	162	short	155	medium	1636405	chromoarm	3273	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	11954128	11954424	AT3TE49770	.	-	ATLINE1A	L1	LINE	297	short	289	high	1635333	chromoarm	2201	.	.	.	.	.	.	.
Chr3	11955462	11955592	AT3TE49775	.	-	ATMUNX1	MuDR	DNA	130	short	155	medium	1634165	chromoarm	1033	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11959166	11959218	AT3TE49785	.	+	ATLINEIII	L1	LINE	52	tiny	196	medium	1630539	chromoarm	197	no-CHH	no-CHH	.	.	.	.	.
Chr3	11959241	11960293	AT3TE49790	.	-	ATREP9	Helitron	RC	1052	short	201	high	1629464	chromoarm	258	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11960293	11960378	AT3TE49795	.	-	ATREP7	Helitron	RC	85	tiny	164	medium	1629379	chromoarm	173	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11962116	11962206	AT3TE49800	.	-	RathE3_cons	.	RathE3_cons	90	tiny	104	medium	1627551	chromoarm	352	no-CHH	no-CHH	.	.	.	.	.
Chr3	11962544	11962721	AT3TE49805	.	-	RathE1_cons	.	RathE1_cons	177	short	213	high	1627036	chromoarm	780	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11962844	11962867	AT3TE49810	.	-	HELITRON2	Helitron	RC	23	tiny	194	medium	1626890	chromoarm	1080	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11962867	11963372	AT3TE49815	.	-	HELITRON2	Helitron	RC	505	short	194	medium	1626385	chromoarm	1103	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11963372	11964161	AT3TE49820	.	+	ATREP10D	Helitron	RC	789	short	1295	high	1625596	chromoarm	1018	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11964371	11965092	AT3TE49825	.	+	VANDAL12	MuDR	DNA	721	short	37	low	1624665	chromoarm	87	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	11964422	11965220	+	transcript_id-"813a2f65-80f2-4418-a331-e233d5302276|83"
Chr3	11966231	11966291	AT3TE49830	.	+	ATREP15	Helitron	RC	61	tiny	1003	high	1623466	chromoarm	511	.	.	.	.	.	.	.
Chr3	11966291	11968819	AT3TE49835	.	+	ATREP3	Helitron	RC	2528	medium	1439	high	1620938	chromoarm	572	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11969209	11969330	AT3TE49840	.	+	ATLINE1A	L1	LINE	121	short	289	high	1620427	chromoarm	3490	no-CHH	no-CHH	.	.	.	.	.
Chr3	11969398	11969571	AT3TE49845	.	+	TNAT1A	.	DNA	173	short	162	medium	1620186	chromoarm	3679	no-CHH	no-CHH	.	.	.	.	.
Chr3	11969574	11970807	AT3TE49850	.	+	SIMPLEGUY1	Harbinger	DNA	1233	short	116	medium	1618950	chromoarm	3616	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11970807	11971086	AT3TE49855	.	+	SIMPLEGUY1	Harbinger	DNA	279	short	116	medium	1618671	chromoarm	3337	no-CHH	no-CHH	.	.	.	.	.
Chr3	11980004	11980026	AT3TE49890	.	+	BOMZH2	MuDR	DNA	22	tiny	47	low	1609731	chromoarm	1177	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	11980026	11981097	AT3TE49895	.	+	BOMZH2	MuDR	DNA	1071	short	47	low	1608660	chromoarm	1199	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	11981227	11981687	AT3TE49900	.	+	ATHILA8B	Gypsy	LTR	460	short	78	medium	1608070	chromoarm	2400	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	11982145	11982840	AT3TE49905	.	+	SIMPLEHAT1	HAT	DNA	695	short	56	medium	1606917	chromoarm	1814	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11982840	11982890	AT3TE49910	.	+	SIMPLEHAT1	HAT	DNA	50	tiny	56	medium	1606867	chromoarm	1764	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	11983126	11983149	AT3TE49915	.	-	ATREP10	Helitron	RC	23	tiny	63	medium	1606608	chromoarm	1505	no-CHH	no-RdDM	.	.	.	.	.
Chr3	11983149	11983631	AT3TE49920	.	+	ATHATN3	HAT	DNA	482	short	70	medium	1606126	chromoarm	1023	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	11984018	11984655	AT3TE49925	.	-	HELITRONY1D	Helitron	RC	637	short	756	high	1605102	chromoarm	0	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11984655	11984720	AT3TE49930	.	+	BRODYAGA1A	MuDR	DNA	65	tiny	586	high	1605037	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	11984981	11986546	AT3TE49935	.	-	ATREP10A	Helitron	RC	1565	short	279	high	1603211	chromoarm	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	11986547	11986875	AT3TE49940	.	-	ATREP4	Helitron	RC	329	short	832	high	1602882	chromoarm	1505	.	.	.	.	.	.	.
Chr3	11986875	11988269	AT3TE49945	.	-	ATREP6	Helitron	RC	1394	short	181	medium	1601488	chromoarm	111	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	11988270	11988383	AT3TE49950	.	+	BRODYAGA2	MuDR	DNA	114	short	525	high	1601374	chromoarm	0	.	.	.	.	.	.	.
Chr3	11988384	11988410	AT3TE49955	.	-	ATREP10A	Helitron	RC	27	tiny	279	high	1601347	chromoarm	0	.	.	.	.	.	.	.
Chr3	11988411	11988430	AT3TE49960	.	+	VANDAL17	MuDR	DNA	20	tiny	178	medium	1601327	chromoarm	0	.	.	.	.	.	.	.
Chr3	11988724	11990278	AT3TE49965	.	-	ATREP10A	Helitron	RC	1554	short	279	high	1599479	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	11990563	11990584	AT3TE49970	.	-	ATREP10A	Helitron	RC	22	tiny	279	high	1599173	chromoarm	1520	.	.	.	.	.	.	.
Chr3	11990584	11992144	AT3TE49975	.	+	ATREP4	Helitron	RC	1560	short	832	high	1597613	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	11992145	11992448	AT3TE49980	.	-	ATREP3	Helitron	RC	304	short	1439	high	1597309	chromoarm	0	.	.	.	.	.	.	.
Chr3	11992448	11994001	AT3TE49985	.	-	ATREP10A	Helitron	RC	1553	short	279	high	1595756	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	11994310	11994982	AT3TE49990	.	-	ATREP15	Helitron	RC	672	short	1003	high	1594775	chromoarm	1852	no-CHH	no-RdDM	.	.	.	.	.
Chr3	11994983	11995632	AT3TE49995	.	+	ATHATN3	HAT	DNA	649	short	70	medium	1594125	chromoarm	1202	no-CHH	DCL3-RdDM	.	.	.	.	.
Chr3	11995632	11995832	AT3TE50000	.	-	ATREP10A	Helitron	RC	200	short	279	high	1593925	chromoarm	1002	no-CHH	no-CHH	.	.	.	.	.
Chr3	11997397	11997690	AT3TE50005	.	-	ATCOPIA94	Copia	LTR	293	short	39	low	1592067	chromoarm	458	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	11997690	11998176	AT3TE50010	.	-	ATHILA4D_LTR	Gypsy	LTR	486	short	106	medium	1591581	chromoarm	751	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	11998176	11998247	AT3TE50015	.	-	ATHILA8B	Gypsy	LTR	71	tiny	78	medium	1591510	chromoarm	1237	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	11998395	11999399	AT3TE50020	.	+	ATENSPM5	En-Spm	DNA	1004	short	111	medium	1590358	chromoarm	1456	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	11998856,11998856,11998857	11999226,12000999,11999559	+,+,+	transcript_id-"55bfd430-3022-4026-ba22-0a514b4c9ed2|12",transcript_id-"d9c03382-1303-4e5b-9d72-6ab1927b77e1|4",transcript_id-"83368c1e-bf40-436c-857f-069b262f4dc6|4"
Chr3	12000266	12007884	AT3TE50025	.	+	ATENSPM5	En-Spm	DNA	7618	long	111	medium	1581873	chromoarm	3327	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	11998856,11998857,11999863,11999863,11999917,12001470,12001476,12001497,12002197,12003591,12004205	12000999,12003727,12001869,12003726,12000973,12001913,12003731,12001689,12003730,12003766,12007176	+,+,+,+,+,+,+,+,+,+,+	transcript_id-"d9c03382-1303-4e5b-9d72-6ab1927b77e1|4",transcript_id-"f010988c-bc02-4da0-a079-f45fc3a2f8d9|3",transcript_id-"8dbb1f50-8844-4ea8-8fe1-9c5be094537e|3",transcript_id-"bac505fc-f077-4e25-bddf-07a73587b8b8|3",transcript_id-"dc46d48e-4b27-4c9f-8f3f-7f19b845a7a7|3",transcript_id-"3b50c5fc-08f6-4333-b26e-7f871e5c729d|16",transcript_id-"4c09e053-0ce1-43ed-afec-42d03bc80272|6",transcript_id-"4d783277-383c-498d-950f-22795639b5a8|3",transcript_id-"beacb1c3-d6fd-457b-b6f3-4d516d66c829|3",transcript_id-"66267f29-68e4-4e26-9bd1-1969dc162855|6",transcript_id-"7f5f6200-1bd5-4f0a-8403-063147745e17|10"
Chr3	12008196	12009443	AT3TE50030	.	-	ATHILA8A	Gypsy	LTR	1247	short	97	medium	1580314	chromoarm	11257	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	12009522	12009881	AT3TE50035	.	-	ATHILA7A	Gypsy	LTR	359	short	31	low	1579876	chromoarm	12583	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	12010014	12010442	AT3TE50040	.	-	ATHILA5	Gypsy	LTR	428	short	131	medium	1579315	chromoarm	13075	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	12011020	12011417	AT3TE50045	.	+	ATHILA8B	Gypsy	LTR	397	short	78	medium	1578340	chromoarm	14081	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	12011433	12013213	AT3TE50050	.	-	ATHILA8B	Gypsy	LTR	1780	short	78	medium	1576544	chromoarm	14494	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	12012219	12012427	AT3TE50055	.	-	ATHILA7	Gypsy	LTR	208	short	134	medium	1577330	chromoarm	15280	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	12012427	12012684	AT3TE50060	.	-	ATCOPIA94	Copia	LTR	257	short	39	low	1577073	chromoarm	15488	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	12013529	12013591	AT3TE50065	.	-	ARNOLDY2	MuDR	DNA	62	tiny	288	high	1576166	chromoarm	16590	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	12013591	12014861	AT3TE50070	.	+	HELITRONY3	Helitron	RC	1270	short	1399	high	1574896	chromoarm	16652	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	12014862	12014906	AT3TE50075	.	-	ARNOLDY2	MuDR	DNA	45	tiny	288	high	1574851	chromoarm	17922	.	.	.	.	.	.	.
Chr3	12015246	12015581	AT3TE50080	.	+	HELITRONY3	Helitron	RC	335	short	1399	high	1574176	chromoarm	18307	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	12015581	12015946	AT3TE50085	.	+	ARNOLDY1	MuDR	DNA	365	short	237	high	1573811	chromoarm	18642	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	12015946	12017988	AT3TE50090	.	+	ARNOLDY1	MuDR	DNA	2042	medium	237	high	1571769	chromoarm	19007	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12017988	12018121	AT3TE50095	.	-	HELITRONY3	Helitron	RC	133	short	1399	high	1571636	chromoarm	21049	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12018121	12018218	AT3TE50100	.	+	ARNOLDY1	MuDR	DNA	97	tiny	237	high	1571539	chromoarm	21182	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	12018218	12018406	AT3TE50105	.	-	HELITRONY3	Helitron	RC	188	short	1399	high	1571351	chromoarm	21279	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12018828	12019174	AT3TE50110	.	+	ATHILA7	Gypsy	LTR	346	short	134	medium	1570583	chromoarm	21889	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	12019544	12019601	AT3TE50115	.	+	ATGP3	Gypsy	LTR	57	tiny	60	medium	1570156	chromoarm	22605	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	12019601	12024774	AT3TE50120	.	+	ATGP3	Gypsy	LTR	5173	long	60	medium	1564983	chromoarm	22662	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	12025063	12040032	AT3TE50125	.	-	ATCOPIA43	Copia	LTR	14969	long	29	low	1549725	chromoarm	24919	no-RdDM	no-RdDM	ExpressedAndAnnotated	12025509,12025718,12025479,12025905	12025110,12025110,12025153,12025731	-,-,-,-	transcript_id-"18658da4-dd12-4892-8c6d-b6941803caf4|6",transcript_id-"33138830-f17d-479e-b386-c53b6ddb4bc7|26",transcript_id-"c4885f26-f032-4627-bfe0-683a0cb431bf|13",transcript_id-"d8e01282-a648-408d-846e-3fec744332f4|5"
Chr3	12033705	12039570	AT3TE50130	.	-	ATGP2	Gypsy	LTR	5865	long	48	low	1550187	chromoarm	25381	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	12041044	12041211	AT3TE50135	.	+	RathE1_cons	.	RathE1_cons	167	short	213	high	1548546	chromoarm	23740	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	12046224	12046263	AT3TE50150	.	-	ATLANTYS1	Gypsy	LTR	39	tiny	153	medium	1543494	chromoarm	18688	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	12046263	12046707	AT3TE50155	.	-	TAT1_ATH	Gypsy	LTR	444	short	87	medium	1543050	chromoarm	18244	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	12047815	12047838	AT3TE50160	.	-	ATHILA6A	Gypsy	LTR	23	tiny	247	high	1541919	chromoarm	17113	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12047838	12051483	AT3TE50165	.	-	ATHILA2	Gypsy	LTR	3645	medium	413	high	1538274	chromoarm	13468	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	12051500	12053203	AT3TE50170	.	-	ATHILA6B	Gypsy	LTR	1703	short	134	medium	1536554	chromoarm	11748	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	12053204	12053323	AT3TE50175	.	-	ATHILA6B	Gypsy	LTR	120	short	134	medium	1536434	chromoarm	11628	.	.	.	.	.	.	.
Chr3	12053323	12053381	AT3TE50180	.	-	ATHILA6A	Gypsy	LTR	58	tiny	247	high	1536376	chromoarm	11570	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12053387	12054530	AT3TE50185	.	-	ATHILA2	Gypsy	LTR	1143	short	413	high	1535227	chromoarm	10421	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12054530	12055403	AT3TE50190	.	-	ATREP3	Helitron	RC	873	short	1439	high	1534354	chromoarm	9548	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	12055403	12055520	AT3TE50195	.	-	HELITRONY3	Helitron	RC	117	short	1399	high	1534237	chromoarm	9431	no-CHH	no-CHH	.	.	.	.	.
Chr3	12056049	12056105	AT3TE50200	.	-	ATHILA4B_LTR	Gypsy	LTR	56	tiny	143	medium	1533652	chromoarm	8846	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12056105	12056724	AT3TE50205	.	-	ATHILA4A	Gypsy	LTR	619	short	310	high	1533033	chromoarm	8227	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12059078	12059749	AT3TE50215	.	+	HELITRON4	Helitron	RC	671	short	199	medium	1530008	chromoarm	5202	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12059973	12060600	AT3TE50220	.	+	HELITRON3	Helitron	RC	627	short	53	medium	1529157	chromoarm	4351	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12061704	12061935	AT3TE50225	.	+	ATREP9	Helitron	RC	231	short	201	high	1527822	chromoarm	3016	no-RdDM	no-CHH	.	.	.	.	.
Chr3	12061954	12062908	AT3TE50230	.	+	ATREP7	Helitron	RC	954	short	164	medium	1526849	chromoarm	2043	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	12062917	12063514	AT3TE50235	.	+	ATREP13	Helitron	RC	597	short	106	medium	1526243	chromoarm	1437	no-CHH	no-CHH	.	.	.	.	.
Chr3	12063514	12063566	AT3TE50240	.	+	ATREP13	Helitron	RC	52	tiny	106	medium	1526191	chromoarm	1385	no-CHH	no-CHH	.	.	.	.	.
Chr3	12063566	12063640	AT3TE50245	.	-	ATREP15	Helitron	RC	74	tiny	1003	high	1526117	chromoarm	1311	no-CHH	RDR6-RdDM	.	.	.	.	.
Chr3	12066376	12067209	AT3TE50255	.	-	ATHILA4A	Gypsy	LTR	833	short	310	high	1522548	chromoarm	1080	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12067210	12071283	AT3TE50260	.	-	ATHILA4	Gypsy	LTR	4073	medium	250	high	1518474	chromoarm	1914	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12071283	12073052	AT3TE50265	.	+	ATGP1	Gypsy	LTR	1769	short	144	medium	1516705	chromoarm	5987	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12073052	12073600	AT3TE50270	.	+	ATHILA2	Gypsy	LTR	548	short	413	high	1516157	chromoarm	7756	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12073674	12074048	AT3TE50275	.	-	ATGP8	Gypsy	LTR	374	short	92	medium	1515709	chromoarm	8378	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12074885	12075080	AT3TE50280	.	+	ATENSPM1A	En-Spm	DNA	195	short	77	medium	1514677	chromoarm	9589	no-RdDM	no-CHH	.	.	.	.	.
Chr3	12075476	12075561	AT3TE50285	.	-	ATGP8	Gypsy	LTR	85	tiny	92	medium	1514196	chromoarm	10180	no-RdDM	no-CHH	.	.	.	.	.
Chr3	12076482	12076857	AT3TE50290	.	-	ATGP8	Gypsy	LTR	375	short	92	medium	1512900	chromoarm	11186	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12077448	12092040	AT3TE50295	.	-	ARNOLD2	MuDR	DNA	14592	long	68	medium	1497717	chromoarm	2372	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	12077605,12082798,12082810	12082025,12085412,12085007	+,+,+	transcript_id-"ac76bbd2-9759-452b-a1ac-7b5921272e04|16",transcript_id-"ba74557f-a256-46b2-8349-bdac5d84a9e1|10",transcript_id-"6d6c0e48-035e-4528-b623-870ed932c8f5|6"
Chr3	12092040	12092995	AT3TE50300	.	-	ARNOLD2	MuDR	DNA	955	short	68	medium	1496762	chromoarm	1417	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12092995	12093565	AT3TE50305	.	-	HELITRONY3	Helitron	RC	570	short	1399	high	1496192	chromoarm	847	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	12093565	12093603	AT3TE50310	.	-	HELITRONY3	Helitron	RC	38	tiny	1399	high	1496154	chromoarm	809	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	12093606	12093654	AT3TE50315	.	+	HELITRONY1D	Helitron	RC	48	tiny	756	high	1496103	chromoarm	758	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	12095372	12095661	AT3TE50320	.	+	ATHATN3	HAT	DNA	289	short	70	medium	1494096	chromoarm	792	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	12096079	12097283	AT3TE50325	.	-	TSCL	.	LINE?	1204	short	81	medium	1492474	chromoarm	1499	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	12097407	12097570	AT3TE50330	.	+	VANDAL3	MuDR	DNA	163	short	177	medium	1492187	chromoarm	2827	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	12097605	12098316	AT3TE50335	.	+	ATHILA4A	Gypsy	LTR	711	short	310	high	1491441	chromoarm	3025	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12098638	12098785	AT3TE50340	.	-	ATGP10	Gypsy	LTR	147	short	165	medium	1490972	chromoarm	4058	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12101239	12101883	AT3TE50350	.	-	ATGP10	Gypsy	LTR	644	short	165	medium	1487874	chromoarm	2549	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	12102127	12102207	AT3TE50355	.	+	ATHILA4C	Gypsy	LTR	80	tiny	206	high	1487550	chromoarm	2225	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12102207	12102675	AT3TE50360	.	+	ATHILA4A	Gypsy	LTR	468	short	310	high	1487082	chromoarm	1757	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12102675	12103759	AT3TE50365	.	+	VANDAL3	MuDR	DNA	1084	short	177	medium	1485998	chromoarm	673	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12103874	12104081	AT3TE50370	.	+	VANDAL3	MuDR	DNA	207	short	177	medium	1485676	chromoarm	351	no-CHH	no-CHH	.	.	.	.	.
Chr3	12105505	12121576	AT3TE50375	.	-	VANDAL3	MuDR	DNA	16071	long	177	medium	1468181	chromoarm	629	no-RdDM	no-RdDM	ExpressedAndAnnotated	12105767,12114380	12107993,12115044	+,+	transcript_id-"2295bef6-9e10-48cd-a856-bc0e0cca87bc|4",transcript_id-"0c17d855-90ba-4dd8-bfa3-2d42600b1f3e|5"
Chr3	12124793	12124944	AT3TE50385	.	-	ATREP15	Helitron	RC	151	short	1003	high	1464813	chromoarm	5395	no-CHH	no-CHH	.	.	.	.	.
Chr3	12124944	12125780	AT3TE50390	.	-	HELITRONY1A	Helitron	RC	836	short	271	high	1463977	chromoarm	4559	no-CHH	no-CHH	.	.	.	.	.
Chr3	12125797	12125836	AT3TE50395	.	-	ATREP15	Helitron	RC	39	tiny	1003	high	1463921	chromoarm	4503	no-CHH	no-CHH	.	.	.	.	.
Chr3	12128448	12128653	AT3TE50405	.	+	BRODYAGA2	MuDR	DNA	205	short	525	high	1461104	chromoarm	1686	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	12128699	12129576	AT3TE50410	.	+	BRODYAGA2	MuDR	DNA	877	short	525	high	1460181	chromoarm	763	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12129318	12129351	AT3TE50415	.	-	BRODYAGA2	MuDR	DNA	33	tiny	525	high	1460406	chromoarm	988	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12129587	12129779	AT3TE50420	.	-	BRODYAGA2	MuDR	DNA	192	short	525	high	1459978	chromoarm	560	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	12132836	12133296	AT3TE50430	.	+	HARBINGER	Harbinger	DNA	460	short	90	medium	1456461	chromoarm	663	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12133420	12133788	AT3TE50435	.	-	BRODYAGA1A	MuDR	DNA	368	short	586	high	1455969	chromoarm	1247	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12134504	12134529	AT3TE50440	.	-	BRODYAGA1A	MuDR	DNA	25	tiny	586	high	1455228	chromoarm	2331	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	12134529	12134971	AT3TE50445	.	+	BRODYAGA1A	MuDR	DNA	442	short	586	high	1454786	chromoarm	2356	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12135144	12135208	AT3TE50450	.	-	ATREP3	Helitron	RC	64	tiny	1439	high	1454549	chromoarm	2971	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	12135208	12137591	AT3TE50455	.	-	HELITRONY3	Helitron	RC	2383	medium	1399	high	1452166	chromoarm	1920	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12137591	12138135	AT3TE50460	.	-	HELITRONY1B	Helitron	RC	544	short	414	high	1451622	chromoarm	1376	no-CHH	no-CHH	.	.	.	.	.
Chr3	12138135	12138206	AT3TE50465	.	+	ATMUN1	MuDR	DNA	71	tiny	107	medium	1451551	chromoarm	1305	no-CHH	no-CHH	.	.	.	.	.
Chr3	12138562	12138950	AT3TE50470	.	+	ATREP5	Helitron	RC	388	short	624	high	1450807	chromoarm	561	no-CHH	no-RdDM	.	.	.	.	.
Chr3	12140771	12140899	AT3TE50475	.	+	RathE2_cons	.	RathE2_cons	128	short	74	medium	1448858	chromoarm	738	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12142601	12143026	AT3TE50480	.	-	ATREP11	Helitron	RC	425	short	841	high	1446731	chromoarm	1765	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	12143026	12143646	AT3TE50485	.	+	ATREP4	Helitron	RC	620	short	832	high	1446111	chromoarm	1145	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	12143807	12144047	AT3TE50490	.	+	ATDNATA1	Mariner	DNA	240	short	28	low	1445710	chromoarm	744	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12146745	12158113	AT3TE50500	.	+	HELITRON2	Helitron	RC	11368	long	194	medium	1431644	chromoarm	270	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	12160318	12160568	AT3TE50505	.	+	ATLINE1_2	L1	LINE	250	short	41	low	1429189	chromoarm	7198	no-RdDM	no-CHH	.	.	.	.	.
Chr3	12164812	12165802	AT3TE50515	.	+	ATREP10D	Helitron	RC	990	short	1295	high	1423955	chromoarm	1964	no-RdDM	no-CHH	.	.	.	.	.
Chr3	12165802	12166166	AT3TE50520	.	+	ATTIRX1A	.	DNA	364	short	63	medium	1423591	chromoarm	1600	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	12166166	12166220	AT3TE50525	.	-	ARNOLDY2	MuDR	DNA	54	tiny	288	high	1423537	chromoarm	1546	no-CHH	no-CHH	.	.	.	.	.
Chr3	12169068	12169322	AT3TE50535	.	+	ATLINE1A	L1	LINE	254	short	289	high	1420435	chromoarm	915	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12170046	12170209	AT3TE50540	.	-	ATLINE2	L1	LINE	163	short	138	medium	1419548	chromoarm	1893	no-CHH	no-CHH	.	.	.	.	.
Chr3	12170606	12170726	AT3TE50545	.	-	ATRE1	Copia	LTR	120	short	22	low	1419031	chromoarm	2453	no-CHH	no-RdDM	.	.	.	.	.
Chr3	12170726	12174172	AT3TE50550	.	-	ATCOPIA67	Copia	LTR	3446	medium	15	low	1415585	chromoarm	2573	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	12171589	12172283	AT3TE50555	.	+	ATHILA4B_LTR	Gypsy	LTR	694	short	143	medium	1417474	chromoarm	3436	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	12172283	12173807	AT3TE50560	.	+	ATHILA8B	Gypsy	LTR	1524	short	78	medium	1415950	chromoarm	4130	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	12174172	12175453	AT3TE50565	.	-	ATCOPIA3	Copia	LTR	1281	short	8	low	1414304	chromoarm	6019	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	12175456	12187368	AT3TE50570	.	+	VANDAL3	MuDR	DNA	11912	long	177	medium	1402389	chromoarm	7303	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	12175631,12175638,12186958	12175997,12176397,12186538	+,+,-	transcript_id-"c4ec4b63-02e1-4aed-8533-e6b546e78ac0|55",transcript_id-"afb6bf7a-a942-4744-a92b-e37164162c2f|3",transcript_id-"b538281d-2054-485b-b791-1ce8e4b2cb7a|4"
Chr3	12177801	12179450	AT3TE50575	.	+	ATHILA3	Gypsy	LTR	1649	short	243	high	1410307	chromoarm	9648	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	12183202	12183214	AT3TE50585	.	+	VANDAL3	MuDR	DNA	12	tiny	177	medium	1406543	chromoarm	15049	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr3	12187385	12191386	AT3TE50595	.	-	ATHILA2	Gypsy	LTR	4001	medium	413	high	1398371	chromoarm	19232	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	12191386	12191851	AT3TE50600	.	-	ATHILA6A	Gypsy	LTR	465	short	247	high	1397906	chromoarm	23233	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	12191851	12195746	AT3TE50605	.	-	ATHILA2	Gypsy	LTR	3895	medium	413	high	1394011	chromoarm	23698	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	12195760	12201227	AT3TE50610	.	+	VANDAL3	MuDR	DNA	5467	long	177	medium	1388530	chromoarm	27607	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	12198115	12198987	AT3TE50615	.	+	VANDAL3	MuDR	DNA	872	short	177	medium	1390770	chromoarm	29962	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	12201753	12202073	AT3TE50625	.	+	ATHILA	Gypsy	LTR	320	short	198	medium	1387684	chromoarm	33600	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	12202073	12209594	AT3TE50630	.	+	ATHILA	Gypsy	LTR	7521	long	198	medium	1380163	chromoarm	33920	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	12205947	12206230	AT3TE50635	.	+	ATHILA6B	Gypsy	LTR	283	short	134	medium	1383527	chromoarm	37794	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12209301	12209352	AT3TE50645	.	+	ATHILA	Gypsy	LTR	51	tiny	198	medium	1380405	chromoarm	41148	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	12209610	12211824	AT3TE50650	.	-	ATENSPM5	En-Spm	DNA	2214	medium	111	medium	1377933	chromoarm	41457	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	12211824	12218034	AT3TE50655	.	-	ATHILA2	Gypsy	LTR	6210	long	413	high	1371723	chromoarm	43671	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	12218034	12222273	AT3TE50660	.	-	ATHILA6B	Gypsy	LTR	4239	medium	134	medium	1367484	chromoarm	49345	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	12222273	12222368	AT3TE50665	.	-	ATHILA0_I	Gypsy	LTR	95	tiny	138	medium	1367389	chromoarm	49250	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	12222368	12225829	AT3TE50670	.	-	ATHILA2	Gypsy	LTR	3461	medium	413	high	1363928	chromoarm	45789	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	12225645,12225460	12225062,12225064	-,-	transcript_id-"1b0d2cd3-a6c1-4e5b-ae93-176b28a71039|3",transcript_id-"dc155c04-c2ae-4950-80cc-f324e4375b17|14"
Chr3	12225829	12232749	AT3TE50675	.	-	ATENSPM5	En-Spm	DNA	6920	long	111	medium	1357008	chromoarm	38869	no-RdDM	no-RdDM	ExpressedAndAnnotated	12228539,12232286,12232284	12228213,12228213,12231767	-,-,-	transcript_id-"958dc3ef-1e15-47dd-8535-5c38bfc53b16|10",transcript_id-"ccc40dc9-0fe7-4bff-b66f-66398c1bde79|4",transcript_id-"1869f239-b22d-4f71-912f-7b135cca11cd|21"
Chr3	12232749	12233684	AT3TE50680	.	+	ATHILA	Gypsy	LTR	935	short	198	medium	1356073	chromoarm	37934	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12234877	12236714	AT3TE50685	.	-	Unassigned	.	Unassigned	1837	short	.	low	1353043	chromoarm	34904	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	12237518	12237553	AT3TE50690	.	-	HELITRON1	Helitron	RC	35	tiny	130	medium	1352204	chromoarm	34065	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12237553	12237892	AT3TE50695	.	-	HELITRON1	Helitron	RC	339	short	130	medium	1351865	chromoarm	33726	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	12237943	12237985	AT3TE50700	.	+	HELITRONY1B	Helitron	RC	42	tiny	414	high	1351772	chromoarm	33633	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12237985	12238519	AT3TE50705	.	-	ATREP10A	Helitron	RC	534	short	279	high	1351238	chromoarm	33099	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12238519	12238838	AT3TE50710	.	+	HELITRONY1B	Helitron	RC	319	short	414	high	1350919	chromoarm	32780	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	12240186	12240338	AT3TE50715	.	-	ATREP11	Helitron	RC	152	short	841	high	1349419	chromoarm	31280	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	12240338	12242019	AT3TE50720	.	-	ATREP15	Helitron	RC	1681	short	1003	high	1347738	chromoarm	29599	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	12242019	12242118	AT3TE50725	.	+	HELITRONY3	Helitron	RC	99	tiny	1399	high	1347639	chromoarm	29500	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	12242118	12242206	AT3TE50730	.	+	ATREP15	Helitron	RC	88	tiny	1003	high	1347551	chromoarm	29412	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	12242734	12243034	AT3TE50735	.	+	ATDNAI27T9A	MuDR	DNA	301	short	116	medium	1346723	chromoarm	28584	.	.	LowExpressed	.	.	.	.
Chr3	12243035	12243061	AT3TE50740	.	+	ATENSPM9	En-Spm	DNA	27	tiny	97	medium	1346696	chromoarm	28557	.	.	.	.	.	.	.
Chr3	12243161	12243188	AT3TE50745	.	+	LIMPET1	MuDR	DNA	27	tiny	116	medium	1346569	chromoarm	28430	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	12243188	12243827	AT3TE50750	.	+	LIMPET1	MuDR	DNA	639	short	116	medium	1345930	chromoarm	27791	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12243827	12243853	AT3TE50755	.	-	ATHILA2	Gypsy	LTR	26	tiny	413	high	1345904	chromoarm	27765	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12243853	12255282	AT3TE50760	.	-	ATHILA2	Gypsy	LTR	11429	long	413	high	1334475	chromoarm	16336	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	12244971	12244827	-	transcript_id-"5d870192-2a5c-4a0e-8965-4235cb118220|4"
Chr3	12255440	12255569	AT3TE50765	.	+	ATDNAI27T9C	MuDR	DNA	129	short	108	medium	1334188	chromoarm	16049	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	12255573	12256494	AT3TE50770	.	-	VANDAL5	MuDR	DNA	921	short	85	medium	1333263	chromoarm	15124	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	12256494	12259605	AT3TE50775	.	+	ATGP1	Gypsy	LTR	3111	medium	144	medium	1330152	chromoarm	12013	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	12258804	12259726	+	transcript_id-"112d2d85-d976-4f06-826a-08108e4eae55|3"
Chr3	12261054	12261098	AT3TE50780	.	+	ATHILA4D_LTR	Gypsy	LTR	44	tiny	106	medium	1328659	chromoarm	10520	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12261098	12262262	AT3TE50785	.	+	ATHILA4	Gypsy	LTR	1164	short	250	high	1327495	chromoarm	9356	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12262262	12262339	AT3TE50790	.	+	ATHILA4B_LTR	Gypsy	LTR	77	tiny	143	medium	1327418	chromoarm	9279	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12264402	12264694	AT3TE50795	.	+	HELITRONY1D	Helitron	RC	292	short	756	high	1325063	chromoarm	6924	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12264819	12265061	AT3TE50800	.	-	ATHATN9	HAT	DNA	242	short	12	low	1324696	chromoarm	6557	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12265390	12269040	AT3TE50805	.	-	HELITRONY2	Helitron	RC	3650	medium	198	medium	1320717	chromoarm	2578	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12266372	12266775	AT3TE50810	.	-	HELITRONY1E	Helitron	RC	403	short	447	high	1322982	chromoarm	4843	no-CHH	no-CHH	.	.	.	.	.
Chr3	12269040	12269251	AT3TE50815	.	-	HELITRON2	Helitron	RC	211	short	194	medium	1320506	chromoarm	2367	no-CHH	no-CHH	.	.	.	.	.
Chr3	12269596	12270439	AT3TE50820	.	-	HELITRONY1E	Helitron	RC	843	short	447	high	1319318	chromoarm	1179	no-RdDM	no-CHH	.	.	.	.	.
Chr3	12273354	12273876	AT3TE50830	.	-	ATGP8	Gypsy	LTR	522	short	92	medium	1315881	chromoarm	1628	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12275146	12275503	AT3TE50835	.	+	ATHILA4	Gypsy	LTR	357	short	250	high	1314254	chromoarm	3420	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12275506	12275925	AT3TE50840	.	-	ATHILA4C	Gypsy	LTR	419	short	206	high	1313832	chromoarm	3780	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12275929	12275956	AT3TE50845	.	-	ATHILA4	Gypsy	LTR	27	tiny	250	high	1313801	chromoarm	4203	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	12276262	12276354	AT3TE50850	.	-	ATREP18	.	DNA	92	tiny	391	high	1313403	chromoarm	4536	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12276354	12276491	AT3TE50855	.	-	ATREP18	.	DNA	137	short	391	high	1313266	chromoarm	4628	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	12276491	12278334	AT3TE50860	.	-	ATREP18	.	DNA	1843	short	391	high	1311423	chromoarm	4765	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12278509	12278830	AT3TE50865	.	-	ATDNAI27T9A	MuDR	DNA	321	short	116	medium	1310927	chromoarm	6783	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12278830	12278894	AT3TE50870	.	-	ATHILA4C	Gypsy	LTR	64	tiny	206	high	1310863	chromoarm	7104	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	12278894	12287842	AT3TE50875	.	-	ATHILA4C	Gypsy	LTR	8948	long	206	high	1301915	chromoarm	7168	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	12285157	12286383	AT3TE50880	.	-	ATHILA4B_LTR	Gypsy	LTR	1226	short	143	medium	1303374	chromoarm	13431	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12287851	12288015	AT3TE50885	.	+	ATLANTYS3	Gypsy	LTR	164	short	142	medium	1301742	chromoarm	16125	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12288028	12294708	AT3TE50890	.	+	ATLANTYS1	Gypsy	LTR	6680	long	153	medium	1295049	chromoarm	16302	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	12293959,12292270	12291627,12291664	-,-	transcript_id-"ad4a86b5-7d20-4f4c-b85a-cbfb094bdd3b|3",transcript_id-"d7c78132-ede8-48b6-bacf-067d997663ff|5"
Chr3	12294708	12295224	AT3TE50895	.	+	ATHILA4	Gypsy	LTR	516	short	250	high	1294533	chromoarm	22982	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	12295224	12296058	AT3TE50900	.	+	ATENSPM4	En-Spm	DNA	834	short	50	medium	1293699	chromoarm	23498	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	12296103	12297531	AT3TE50905	.	+	ATHILA4A	Gypsy	LTR	1428	short	310	high	1292226	chromoarm	24377	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12297531	12298224	AT3TE50910	.	+	ATHILA4D_LTR	Gypsy	LTR	693	short	106	medium	1291533	chromoarm	25805	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	12298224	12298352	AT3TE50915	.	+	ATHILA4C	Gypsy	LTR	128	short	206	high	1291405	chromoarm	26498	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	12298381	12298510	AT3TE50920	.	-	ATLINE1_6	L1	LINE	129	short	129	medium	1291247	chromoarm	26655	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	12299030	12299414	AT3TE50925	.	+	ATREP5	Helitron	RC	384	short	624	high	1290343	chromoarm	27304	no-RdDM	no-CHH	.	.	.	.	.
Chr3	12302076	12302108	AT3TE50935	.	-	ATHILA3	Gypsy	LTR	32	tiny	243	high	1287649	chromoarm	30350	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	12302108	12308742	AT3TE50940	.	-	ATHILA3	Gypsy	LTR	6634	long	243	high	1281015	chromoarm	30382	no-RdDM	no-RdDM	ExpressedAndAnnotated	12303251,12304995,12304995,12304995	12303045,12303742,12304420,12304817	-,-,-,-	transcript_id-"1b46a622-4ebb-4f98-a427-25e4c45413b2|3",transcript_id-"fcead81e-be7b-4817-af25-3a25b449777a|3",transcript_id-"23dd646e-c635-4deb-b0c2-ba97ca8e223a|9",transcript_id-"efeccfe0-39a6-4ee7-b2b5-f1e79835620f|5"
Chr3	12308783	12308993	AT3TE50945	.	+	ATENSPM4	En-Spm	DNA	210	short	50	medium	1280764	chromoarm	37057	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12308993	12309884	AT3TE50950	.	-	ATHILA4D_LTR	Gypsy	LTR	891	short	106	medium	1279873	chromoarm	37267	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12309888	12311004	AT3TE50955	.	-	VANDAL7	MuDR	DNA	1116	short	36	low	1278753	chromoarm	38162	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12311261	12311802	AT3TE50960	.	-	VANDAL6	MuDR	DNA	541	short	89	medium	1277955	chromoarm	37658	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	12312103	12312680	AT3TE50965	.	-	VANDAL7	MuDR	DNA	577	short	36	low	1277077	chromoarm	36780	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	12312855	12314639	AT3TE50970	.	-	ATHILA2	Gypsy	LTR	1784	short	413	high	1275118	chromoarm	34821	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	12314640	12314725	AT3TE50975	.	-	ATHILA6B	Gypsy	LTR	85	tiny	134	medium	1275032	chromoarm	34735	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	12314747	12315047	AT3TE50980	.	-	VANDAL7	MuDR	DNA	300	short	36	low	1274710	chromoarm	34413	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12315069	12316854	AT3TE50985	.	+	VANDAL3	MuDR	DNA	1785	short	177	medium	1272903	chromoarm	32606	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12317188	12317461	AT3TE50990	.	+	VANDAL3	MuDR	DNA	273	short	177	medium	1272296	chromoarm	31999	no-CHH	no-RdDM	.	.	.	.	.
Chr3	12317782	12317988	AT3TE50995	.	+	ATMU1	MuDR	DNA	206	short	59	medium	1271769	chromoarm	31472	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12318628	12318848	AT3TE51000	.	+	ATMU1	MuDR	DNA	220	short	59	medium	1270909	chromoarm	30612	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12318948	12319375	AT3TE51005	.	-	VANDAL7	MuDR	DNA	427	short	36	low	1270382	chromoarm	30085	no-CHH	no-CHH	.	.	.	.	.
Chr3	12319469	12319496	AT3TE51010	.	-	ATHILA4B_LTR	Gypsy	LTR	27	tiny	143	medium	1270261	chromoarm	29964	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12319496	12319862	AT3TE51015	.	-	ATHILA4D_LTR	Gypsy	LTR	366	short	106	medium	1269895	chromoarm	29598	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12319862	12320237	AT3TE51020	.	-	ATHILA4	Gypsy	LTR	375	short	250	high	1269520	chromoarm	29223	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	12320252	12321302	AT3TE51025	.	-	ATHILA4A	Gypsy	LTR	1050	short	310	high	1268455	chromoarm	28158	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12321344	12321480	AT3TE51030	.	-	ATHILA4	Gypsy	LTR	136	short	250	high	1268277	chromoarm	27980	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12321748	12323947	AT3TE51035	.	+	ATHILA4	Gypsy	LTR	2199	medium	250	high	1265810	chromoarm	25513	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	12323831	12323865	AT3TE51040	.	+	ATHILA4B_LTR	Gypsy	LTR	34	tiny	143	medium	1265892	chromoarm	25595	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr3	12323966	12324111	AT3TE51045	.	-	ATHILA4	Gypsy	LTR	145	short	250	high	1265646	chromoarm	25349	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12324111	12324876	AT3TE51050	.	-	ATHILA4B_LTR	Gypsy	LTR	765	short	143	medium	1264881	chromoarm	24584	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12324876	12324898	AT3TE51055	.	-	ATHILA4D_LTR	Gypsy	LTR	22	tiny	106	medium	1264859	chromoarm	24562	no-CHH	RDR6-RdDM	.	.	.	.	.
Chr3	12324898	12325224	AT3TE51060	.	-	ATHILA4C	Gypsy	LTR	326	short	206	high	1264533	chromoarm	24236	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	12325224	12325394	AT3TE51065	.	-	ATHILA4	Gypsy	LTR	170	short	250	high	1264363	chromoarm	24066	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12325736	12327358	AT3TE51070	.	-	ATHILA4	Gypsy	LTR	1622	short	250	high	1262399	chromoarm	22102	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	12327361	12332017	AT3TE51075	.	+	ATHILA3	Gypsy	LTR	4656	medium	243	high	1257740	pericentromeric	17443	no-RdDM	no-RdDM	ExpressedAndAnnotated	12327492	12328073	+	transcript_id-"40dff516-7753-4ea4-b460-56a188d007f0|3"
Chr3	12330726	12330776	AT3TE51080	.	+	ATHILA3	Gypsy	LTR	50	tiny	243	high	1258981	pericentromeric	18684	RDR6-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	12332017	12332177	AT3TE51085	.	-	ATHILA4B_LTR	Gypsy	LTR	160	short	143	medium	1257580	pericentromeric	17283	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	12332957	12333150	AT3TE51090	.	-	ATLANTYS2	Gypsy	LTR	193	short	179	medium	1256607	pericentromeric	16310	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	12333152	12334300	AT3TE51095	.	+	ATHILA4A	Gypsy	LTR	1148	short	310	high	1255457	pericentromeric	15160	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	12334300	12334364	AT3TE51100	.	+	ATHILA4	Gypsy	LTR	64	tiny	250	high	1255393	pericentromeric	15096	no-RdDM	no-CHH	.	.	.	.	.
Chr3	12334364	12334823	AT3TE51105	.	+	ATHILA4	Gypsy	LTR	459	short	250	high	1254934	pericentromeric	14637	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12335007	12339874	AT3TE51110	.	+	ATHILA4C	Gypsy	LTR	4867	medium	206	high	1249883	pericentromeric	9586	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	12338482	12338517	AT3TE51115	.	-	ARNOLDY1	MuDR	DNA	35	tiny	237	high	1251240	pericentromeric	10943	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	12338517	12339083	AT3TE51120	.	-	ATREP6	Helitron	RC	566	short	181	medium	1250674	pericentromeric	10377	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12339874	12341545	AT3TE51125	.	+	ATHILA4A	Gypsy	LTR	1671	short	310	high	1248212	pericentromeric	7915	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12341557	12342416	AT3TE51130	.	+	ATENSPM6	En-Spm	DNA	859	short	151	medium	1247341	pericentromeric	7044	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	12342416	12343916	AT3TE51135	.	+	ATHILA3	Gypsy	LTR	1500	short	243	high	1245841	pericentromeric	5544	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	12343944	12348316	AT3TE51140	.	+	ATENSPM11	En-Spm	DNA	4372	medium	47	low	1241441	pericentromeric	1144	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	12348100	12348715	+	transcript_id-"7837a0b3-8f56-45f4-ba63-e7078a782938|3"
Chr3	12348316	12348428	AT3TE51145	.	+	ATENSPM10	En-Spm	DNA	112	short	81	medium	1241329	pericentromeric	1032	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	12348428	12350350	AT3TE51150	.	+	ATENSPM11	En-Spm	DNA	1922	short	47	low	1239407	pericentromeric	0	no-RdDM	no-RdDM	ExpressedAndAnnotated	12348100,12349040	12348715,12349851	+,+	transcript_id-"7837a0b3-8f56-45f4-ba63-e7078a782938|3",transcript_id-"c719bb12-3ca9-4bdf-ab62-e7fb83123cde|117"
Chr3	12350350	12350968	AT3TE51155	.	-	ATLINEIII	L1	LINE	618	short	196	medium	1238789	pericentromeric	624	no-CHH	no-CHH	.	.	.	.	.
Chr3	12353134	12353408	AT3TE51160	.	-	ATLINE1A	L1	LINE	275	short	289	high	1236349	pericentromeric	289	.	.	.	.	.	.	.
Chr3	12353528	12353843	AT3TE51165	.	-	HELITRONY1A	Helitron	RC	315	short	271	high	1235914	pericentromeric	684	no-CHH	no-CHH	.	.	.	.	.
Chr3	12353843	12354728	AT3TE51170	.	-	ATREP11	Helitron	RC	885	short	841	high	1235029	pericentromeric	999	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12354728	12355036	AT3TE51175	.	+	ATREP10D	Helitron	RC	308	short	1295	high	1234721	pericentromeric	1884	no-RdDM	no-CHH	.	.	.	.	.
Chr3	12356038	12356216	AT3TE51180	.	-	ATLINE1_6	L1	LINE	178	short	129	medium	1233541	pericentromeric	1179	no-CHH	no-CHH	.	.	.	.	.
Chr3	12356228	12356836	AT3TE51185	.	-	ATLINE1_5	L1	LINE	608	short	91	medium	1232921	pericentromeric	559	no-CHH	no-CHH	.	.	.	.	.
Chr3	12358142	12358189	AT3TE51190	.	+	BRODYAGA2	MuDR	DNA	47	tiny	525	high	1231568	pericentromeric	543	no-CHH	no-CHH	.	.	.	.	.
Chr3	12358189	12362224	AT3TE51195	.	-	HELITRON3	Helitron	RC	4035	medium	53	medium	1227533	pericentromeric	590	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	12360754,12360754,12360785	12361118,12361191,12361254	+,+,+	transcript_id-"3d17a3b7-ef6b-46bd-b30d-5080e42b04f4|4",transcript_id-"84535067-f6f4-43ef-80ef-b4c4ae8a4fcd|28",transcript_id-"c331b48b-2ced-4175-867f-9e331b1fc85a|4"
Chr3	12358872	12359454	AT3TE51200	.	-	ATREP6	Helitron	RC	582	short	181	medium	1230303	pericentromeric	1273	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12362621	12364053	AT3TE51210	.	-	HELITRON2	Helitron	RC	1432	short	194	medium	1225704	pericentromeric	5022	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	12364053	12365550	AT3TE51215	.	-	HELITRON4	Helitron	RC	1497	short	199	medium	1224207	pericentromeric	6454	no-CHH	no-CHH	.	.	.	.	.
Chr3	12365550	12365606	AT3TE51220	.	-	HELITRON4	Helitron	RC	56	tiny	199	medium	1224151	pericentromeric	7951	no-CHH	no-CHH	.	.	.	.	.
Chr3	12365649	12365965	AT3TE51225	.	-	HELITRON1	Helitron	RC	316	short	130	medium	1223792	pericentromeric	8050	no-CHH	no-CHH	.	.	.	.	.
Chr3	12371345	12372820	AT3TE51240	.	-	Unassigned	.	Unassigned	1475	short	.	low	1216937	pericentromeric	13746	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12373186	12374063	AT3TE51245	.	-	ATHILA2	Gypsy	LTR	877	short	413	high	1215694	pericentromeric	15587	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12374067	12381768	AT3TE51250	.	+	ATENSPM9	En-Spm	DNA	7701	long	97	medium	1207989	pericentromeric	16468	no-RdDM	no-RdDM	ExpressedAndAnnotated	12378511	12381267	+	transcript_id-"da94ad89-2ca1-41fe-ad55-fabb3adc8b9e|3"
Chr3	12381768	12383061	AT3TE51255	.	-	ATHILA2	Gypsy	LTR	1293	short	413	high	1206696	pericentromeric	24169	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12383122	12383634	AT3TE51260	.	+	ATLANTYS1	Gypsy	LTR	512	short	153	medium	1206123	pericentromeric	25523	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12387506	12391925	AT3TE51270	.	+	ATLINE1_4	L1	LINE	4419	medium	102	medium	1197832	pericentromeric	29907	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	12394082	12395860	AT3TE51275	.	+	ATCOPIA95	Copia	LTR	1778	short	72	medium	1193897	pericentromeric	36483	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12395860	12396677	AT3TE51280	.	+	ATCOPIA49	Copia	LTR	817	short	34	low	1193080	pericentromeric	38261	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12398284	12399396	AT3TE51285	.	+	HELITRONY1A	Helitron	RC	1112	short	271	high	1190361	pericentromeric	40685	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	12400759	12401375	AT3TE51290	.	+	ATENSPM9	En-Spm	DNA	616	short	97	medium	1188382	pericentromeric	43160	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	12401375	12401404	AT3TE51295	.	+	ATHILA6A	Gypsy	LTR	29	tiny	247	high	1188353	pericentromeric	43268	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	12401404	12403742	AT3TE51300	.	+	ATHILA2	Gypsy	LTR	2338	medium	413	high	1186015	pericentromeric	40930	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	12403742	12404909	AT3TE51305	.	-	ATHILA4B_LTR	Gypsy	LTR	1167	short	143	medium	1184848	pericentromeric	39763	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	12404909	12404936	AT3TE51310	.	+	ATHILA0_I	Gypsy	LTR	27	tiny	138	medium	1184821	pericentromeric	39736	no-RdDM	no-CHH	.	.	.	.	.
Chr3	12404936	12409222	AT3TE51315	.	+	ATHILA6B	Gypsy	LTR	4286	medium	134	medium	1180535	pericentromeric	35450	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	12409222	12409272	AT3TE51320	.	+	ATHILA6B	Gypsy	LTR	50	tiny	134	medium	1180485	pericentromeric	35400	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	12409272	12414048	AT3TE51325	.	+	ATHILA2	Gypsy	LTR	4776	medium	413	high	1175709	pericentromeric	30624	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	12413547	12414685	+	transcript_id-"b1640c55-6718-4b73-82fc-c171a88e929f|3"
Chr3	12414052	12414180	AT3TE51330	.	+	ATGP5	Gypsy	LTR	128	short	86	medium	1175577	pericentromeric	30492	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	12414180	12414357	AT3TE51335	.	+	ATGP6	Gypsy	LTR	177	short	25	low	1175400	pericentromeric	30315	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	12414357	12414961	AT3TE51340	.	+	ATGP5	Gypsy	LTR	604	short	86	medium	1174796	pericentromeric	29711	no-RdDM	no-RdDM	ExpressedAndAnnotated	12414138	12414685	+	transcript_id-"8ad5ddaa-36dd-4058-a940-e7b02a663cbd|23"
Chr3	12414961	12423192	AT3TE51345	.	+	VANDAL3	MuDR	DNA	8231	long	177	medium	1166565	pericentromeric	21480	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	12423197	12431455	AT3TE51350	.	+	VANDAL3	MuDR	DNA	8258	long	177	medium	1158302	pericentromeric	13217	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	12427711	12428854	AT3TE51355	.	-	ATHILA4B_LTR	Gypsy	LTR	1143	short	143	medium	1160903	pericentromeric	15818	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12431456	12434645	AT3TE51365	.	-	ATHILA4A	Gypsy	LTR	3189	medium	310	high	1155112	pericentromeric	10027	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	12434645	12437257	AT3TE51370	.	-	ATHILA4C	Gypsy	LTR	2612	medium	206	high	1152500	pericentromeric	7415	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12437265	12437685	AT3TE51375	.	+	VANDAL3	MuDR	DNA	420	short	177	medium	1152072	pericentromeric	6987	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12437685	12442726	AT3TE51380	.	+	ATENSPM6	En-Spm	DNA	5041	long	151	medium	1147031	pericentromeric	1946	no-RdDM	no-RdDM	ExpressedAndAnnotated	12440629	12442020	+	transcript_id-"9424b617-1c6c-4af5-a9e9-b1c59d319ff1|12"
Chr3	12442729	12443791	AT3TE51385	.	+	VANDAL3	MuDR	DNA	1062	short	177	medium	1145966	pericentromeric	881	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	12443805	12444221	AT3TE51390	.	-	HELITRONY1D	Helitron	RC	416	short	756	high	1145536	pericentromeric	451	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12444221	12444329	AT3TE51395	.	-	RP1_AT	.	DNA	108	short	87	medium	1145428	pericentromeric	343	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12452044	12452587	AT3TE51420	.	-	ATDNA2T9C	MuDR	DNA	543	short	242	high	1137170	pericentromeric	918	no-CHH	no-CHH	.	.	.	.	.
Chr3	12453100	12453652	AT3TE51425	.	-	ATREP11	Helitron	RC	552	short	841	high	1136105	pericentromeric	1974	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	12454056	12455007	AT3TE51430	.	+	HELITRON2	Helitron	RC	951	short	194	medium	1134750	pericentromeric	2930	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12455141	12456141	AT3TE51435	.	+	ATMUN2	MuDR	DNA	1000	short	6	low	1133616	pericentromeric	3043	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12457388	12458153	AT3TE51440	.	+	ATMU9	MuDR	DNA	765	short	16	low	1131604	pericentromeric	1031	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12459368	12460239	AT3TE51445	.	+	META1	Copia	LTR	871	short	138	medium	1129518	pericentromeric	64	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	12460394	12461629	AT3TE51450	.	+	ATHILA4	Gypsy	LTR	1235	short	250	high	1128128	pericentromeric	1090	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12461629	12461689	AT3TE51455	.	+	ATHILA4C	Gypsy	LTR	60	tiny	206	high	1128068	pericentromeric	2325	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12461859	12472012	AT3TE51460	.	-	ATENSPM2	En-Spm	DNA	10153	long	114	medium	1117745	pericentromeric	2555	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	12465287,12465284,12469639,12467921,12471528	12462437,12462440,12467583,12467621,12471206	-,-,-,-,-	transcript_id-"4bd3fc22-40d9-4737-80a8-bc6b9d0fe96a|6",transcript_id-"188610e7-99a4-447b-91ba-64c492b01e33|14",transcript_id-"f62cbdc2-6483-45b8-9e2f-bbb0b0acc887|3",transcript_id-"97561f0e-1abd-4a97-b0c2-eb7479504615|4",transcript_id-"60f02e35-0130-4e99-8720-0287e28737da|5"
Chr3	12465701	12465761	AT3TE51465	.	-	ATENSPM2	En-Spm	DNA	60	tiny	114	medium	1123996	pericentromeric	6397	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12465761	12467534	AT3TE51470	.	-	ARNOLDY1	MuDR	DNA	1773	short	237	high	1122223	pericentromeric	6457	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	12473046	12473510	AT3TE51490	.	-	HELITRONY1A	Helitron	RC	464	short	271	high	1116247	pericentromeric	13742	no-CHH	no-RdDM	.	.	.	.	.
Chr3	12473540	12474001	AT3TE51495	.	+	ATCOPIA37	Copia	LTR	461	short	32	low	1115756	pericentromeric	14236	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	12474744	12477424	AT3TE51500	.	-	ATHILA4C	Gypsy	LTR	2680	medium	206	high	1112333	pericentromeric	11553	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12478084	12486325	AT3TE51505	.	+	ATGP1	Gypsy	LTR	8241	long	144	medium	1103432	pericentromeric	2652	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	12486401	12487075	AT3TE51510	.	-	ATENSPM7	En-Spm	DNA	674	short	74	medium	1102682	pericentromeric	1902	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	12487382	12488603	AT3TE51515	.	+	ATREP4	Helitron	RC	1221	short	832	high	1101154	pericentromeric	374	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	12488603	12488627	AT3TE51520	.	+	ATREP10A	Helitron	RC	24	tiny	279	high	1101130	pericentromeric	350	no-RdDM	no-CHH	.	.	.	.	.
Chr3	12488627	12488850	AT3TE51525	.	+	ATREP10B	Helitron	RC	223	short	491	high	1100907	pericentromeric	127	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	12491768	12502153	AT3TE51535	.	-	ATLANTYS1	Gypsy	LTR	10385	long	153	medium	1087604	pericentromeric	1843	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	12492083,12492726,12495170,12501959	12491856,12495739,12495702,12501732	-,+,+,-	transcript_id-"2714b73a-e5b0-4185-ae15-fa91ad3d2f41|4",transcript_id-"5c24f6f1-972b-49be-88e0-29d67a1f2b8e|3",transcript_id-"248ebac8-86fa-4285-bc44-a923f1c4ba3e|3",transcript_id-"cfae6b9e-53e4-425b-a486-6a65a20c382b|14"
Chr3	12504597	12507904	AT3TE51545	.	+	ATGP3	Gypsy	LTR	3307	medium	60	medium	1081853	pericentromeric	14672	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	12508965	12511291	AT3TE51550	.	+	ATCOPIA63	Copia	LTR	2326	medium	11	low	1078466	pericentromeric	19040	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	12511291	12511333	AT3TE51555	.	+	ATCOPIA63	Copia	LTR	42	tiny	11	low	1078424	pericentromeric	21366	no-RdDM	no-CHH	.	.	.	.	.
Chr3	12511567	12511597	AT3TE51560	.	+	ATGP2	Gypsy	LTR	30	tiny	48	low	1078160	pericentromeric	21642	no-RdDM	no-CHH	.	.	.	.	.
Chr3	12511597	12513640	AT3TE51565	.	+	ATGP2N	Gypsy	LTR	2043	medium	54	medium	1076117	pericentromeric	21672	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	12513640	12514125	AT3TE51570	.	-	ATCOPIA37	Copia	LTR	485	short	32	low	1075632	pericentromeric	23715	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	12514125	12514150	AT3TE51575	.	-	ATCOPIA59	Copia	LTR	25	tiny	20	low	1075607	pericentromeric	24200	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	12514150	12515144	AT3TE51580	.	-	ATCOPIA37	Copia	LTR	994	short	32	low	1074613	pericentromeric	24225	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	12515144	12516314	AT3TE51585	.	-	ATCOPIA43	Copia	LTR	1170	short	29	low	1073443	pericentromeric	25219	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	12517292	12515191	-	transcript_id-"118e9810-0ce7-4f6e-b84a-172fa33f3586|4"
Chr3	12516314	12523089	AT3TE51590	.	-	ATHILA3	Gypsy	LTR	6775	long	243	high	1066668	pericentromeric	26389	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	12517292	12515191	-	transcript_id-"118e9810-0ce7-4f6e-b84a-172fa33f3586|4"
Chr3	12522506	12522558	AT3TE51595	.	-	ATHILA3	Gypsy	LTR	52	tiny	243	high	1067199	pericentromeric	32581	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	12523603	12524094	AT3TE51600	.	+	ATHILA4A	Gypsy	LTR	491	short	310	high	1065663	pericentromeric	33678	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	12524112	12524333	AT3TE51605	.	+	ATCOPIA94	Copia	LTR	221	short	39	low	1065424	pericentromeric	34187	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	12524362	12524574	AT3TE51610	.	+	ATHILA7A	Gypsy	LTR	212	short	31	low	1065183	pericentromeric	34437	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	12524820	12524882	AT3TE51615	.	+	ATHILA0_I	Gypsy	LTR	62	tiny	138	medium	1064875	pericentromeric	34895	PolIV-and-RDR6-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	12524882	12526171	AT3TE51620	.	+	ATHILA6A	Gypsy	LTR	1289	short	247	high	1063586	pericentromeric	34957	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	12526370	12526459	AT3TE51625	.	+	ATHILA7	Gypsy	LTR	89	tiny	134	medium	1063298	pericentromeric	36445	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12526588	12528988	AT3TE51630	.	+	ATHILA7	Gypsy	LTR	2400	medium	134	medium	1060769	pericentromeric	36663	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	12531320	12531484	AT3TE51635	.	+	ATHILA8A	Gypsy	LTR	164	short	97	medium	1058273	pericentromeric	41395	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	12531538	12531888	AT3TE51640	.	+	ATHILA8B	Gypsy	LTR	350	short	78	medium	1057869	pericentromeric	41613	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	12532321	12532367	AT3TE51645	.	+	ATHILA2	Gypsy	LTR	46	tiny	413	high	1057390	pericentromeric	42396	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12532367	12535566	AT3TE51650	.	+	ATHILA2	Gypsy	LTR	3199	medium	413	high	1054191	pericentromeric	42442	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	12535566	12535719	AT3TE51655	.	+	ATHILA6A	Gypsy	LTR	153	short	247	high	1054038	pericentromeric	45641	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	12535719	12539729	AT3TE51660	.	+	ATHILA2	Gypsy	LTR	4010	medium	413	high	1050028	pericentromeric	45794	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	12536669	12538744	+	transcript_id-"00560ff0-3fbb-4209-8eb7-56bf28e8e6ea|18"
Chr3	12539735	12539770	AT3TE51665	.	+	ATHILA2	Gypsy	LTR	35	tiny	413	high	1049987	pericentromeric	48681	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	12539770	12540250	AT3TE51670	.	-	ATHILA3	Gypsy	LTR	480	short	243	high	1049507	pericentromeric	48201	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	12540251	12547951	AT3TE51675	.	-	ATCOPIA43	Copia	LTR	7700	long	29	low	1041806	pericentromeric	40500	no-RdDM	no-RdDM	ExpressedAndAnnotated	12541462	12539641	-	transcript_id-"2509c92d-115f-4c7d-a6a1-ea5d858316b7|11"
Chr3	12546645	12547792	AT3TE51680	.	+	ATHILA4D_LTR	Gypsy	LTR	1147	short	106	medium	1041965	pericentromeric	40659	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12547951	12555918	AT3TE51685	.	-	ATGP6	Gypsy	LTR	7967	long	25	low	1033839	pericentromeric	32533	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12555918	12558039	AT3TE51690	.	-	ATCOPIA37	Copia	LTR	2121	medium	32	low	1031718	pericentromeric	30412	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12558291	12559109	AT3TE51695	.	+	ATHPOGON3	Pogo	DNA	818	short	118	medium	1030648	pericentromeric	29342	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	12559109	12559158	AT3TE51700	.	+	ATHPOGON1	Pogo	DNA	49	tiny	174	medium	1030599	pericentromeric	29293	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	12559158	12559238	AT3TE51705	.	-	ATHATN3	HAT	DNA	80	tiny	70	medium	1030519	pericentromeric	29213	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	12559238	12560276	AT3TE51710	.	+	HELITRON1	Helitron	RC	1038	short	130	medium	1029481	pericentromeric	28175	no-CHH	no-CHH	ExpressedAndAnnotated	12560054,12560054	12559364,12559429	-,-	transcript_id-"495f063b-4b7e-4369-a13b-3958ddff0523|56",transcript_id-"498ea32f-f487-4c1a-818b-5e2e7f01dc2c|7"
Chr3	12560320	12560388	AT3TE51715	.	+	SIMPLEHAT2	HAT	DNA	68	tiny	73	medium	1029369	pericentromeric	28063	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12562161	12562272	AT3TE51720	.	-	ATREP3	Helitron	RC	111	short	1439	high	1027485	pericentromeric	26179	no-RdDM	no-CHH	.	.	.	.	.
Chr3	12562272	12563143	AT3TE51725	.	-	ATREP11A	Helitron	RC	871	short	95	medium	1026614	pericentromeric	25308	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	12563143	12563316	AT3TE51730	.	+	HELITRONY1A	Helitron	RC	173	short	271	high	1026441	pericentromeric	25135	no-RdDM	no-CHH	ExpressedAndAnnotated	12563644	12563168	-	transcript_id-"1b5ff0bb-8df0-484a-8443-fa6924d156e5|4"
Chr3	12563409	12570235	AT3TE51735	.	-	ATENSPM3	En-Spm	DNA	6826	long	98	medium	1019522	pericentromeric	18216	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	12563644,12567344	12563168,12566120	-,-	transcript_id-"1b5ff0bb-8df0-484a-8443-fa6924d156e5|4",transcript_id-"36d12487-7982-4818-a8b9-265cb0035a92|5"
Chr3	12565230	12565312	AT3TE51740	.	-	ATENSPM7	En-Spm	DNA	82	tiny	74	medium	1024445	pericentromeric	23139	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	12570440	12570760	AT3TE51760	.	-	VANDAL17	MuDR	DNA	321	short	178	medium	1018997	pericentromeric	17691	.	.	LowExpressed	.	.	.	.
Chr3	12572114	12572376	AT3TE51765	.	+	ATCOPIA95	Copia	LTR	262	short	72	medium	1017381	pericentromeric	16075	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12572744	12572898	AT3TE51770	.	+	ATMU2	MuDR	DNA	154	short	64	medium	1016859	pericentromeric	15553	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12573383	12573609	AT3TE51775	.	-	ATMU2	MuDR	DNA	226	short	64	medium	1016148	pericentromeric	14842	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	12574487	12574554	AT3TE51780	.	-	ATREP3	Helitron	RC	67	tiny	1439	high	1015203	pericentromeric	13897	no-CHH	no-CHH	.	.	.	.	.
Chr3	12574554	12575302	AT3TE51785	.	+	ATREP15	Helitron	RC	748	short	1003	high	1014455	pericentromeric	13149	no-CHH	no-CHH	.	.	.	.	.
Chr3	12575302	12575473	AT3TE51790	.	-	HELITRONY2	Helitron	RC	171	short	198	medium	1014284	pericentromeric	12978	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	12575633	12576554	AT3TE51795	.	+	ATCOPIA95	Copia	LTR	921	short	72	medium	1013203	pericentromeric	11897	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	12577963	12578028	AT3TE51800	.	-	ATCOPIA42	Copia	LTR	65	tiny	35	low	1011729	pericentromeric	10423	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	12581067	12582803	AT3TE51810	.	-	ATHILA2	Gypsy	LTR	1736	short	413	high	1006954	pericentromeric	5648	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	12582803	12582838	AT3TE51815	.	-	ATHILA	Gypsy	LTR	35	tiny	198	medium	1006919	pericentromeric	5613	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	12582987	12585063	AT3TE51820	.	-	ATGP3	Gypsy	LTR	2076	medium	60	medium	1004694	pericentromeric	3388	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	12585063	12585185	AT3TE51825	.	-	ATGP1	Gypsy	LTR	122	short	144	medium	1004572	pericentromeric	3266	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	12588179	12588253	AT3TE51835	.	-	ATCOPIA43	Copia	LTR	74	tiny	29	low	1001504	pericentromeric	198	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	12591086	12591205	AT3TE51845	.	+	ATLINE1A	L1	LINE	119	short	289	high	998552	pericentromeric	389	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12599257	12599520	AT3TE51870	.	-	DT1	Mariner	DNA	263	short	123	medium	990237	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	12599520	12599604	AT3TE51875	.	-	BRODYAGA1A	MuDR	DNA	84	tiny	586	high	990153	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	12600468	12602948	AT3TE51880	.	-	ATREP10D	Helitron	RC	2480	medium	1295	high	986809	pericentromeric	36	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	12603156	12603207	AT3TE51885	.	-	META1	Copia	LTR	51	tiny	138	medium	986550	pericentromeric	2724	PolIV-and-RDR6-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	12603207	12603265	AT3TE51890	.	-	META1	Copia	LTR	58	tiny	138	medium	986492	pericentromeric	2775	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	12603265	12606828	AT3TE51895	.	-	ROMANIAT5	Copia	LTR	3563	medium	49	low	982929	pericentromeric	2833	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	12604117,12605983,12605983	12602925,12605734,12605811	-,-,-	transcript_id-"9abf4631-4e27-42d8-a37d-3ea83f4c741a|5",transcript_id-"34ae4a8b-cf2e-4c52-aca1-40a730d0617d|4",transcript_id-"b998ddd4-e67d-4096-9b5f-91a52489efc6|25"
Chr3	12607222	12608295	AT3TE51900	.	-	ATCOPIA28	Copia	LTR	1073	short	81	medium	981462	pericentromeric	6790	no-RdDM	no-RdDM	ExpressedAndAnnotated	12608609,12608606,12608607	12606934,12607074,12607115	-,-,-	transcript_id-"b60b0323-ff2e-4b01-96c6-2545c185e6f5|6",transcript_id-"c445feff-a87f-4080-a6ea-028e72524afc|57",transcript_id-"a14dd9dd-aff3-4f0b-8802-6164c366e465|20"
Chr3	12608295	12608329	AT3TE51905	.	-	ATCOPIA27	Copia	LTR	34	tiny	19	low	981428	pericentromeric	7863	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	12609824	12610722	AT3TE51910	.	-	VANDAL18NA	MuDR	DNA	898	short	24	low	979035	pericentromeric	9392	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	12610795	12610962	AT3TE51915	.	-	HELITRONY3A	Helitron	RC	167	short	49	low	978795	pericentromeric	10363	PolIV-and-RDR6-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	12611959	12612378	AT3TE51920	.	-	ATREP19	.	DNA	419	short	189	medium	977379	pericentromeric	11527	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	12613274	12613307	AT3TE51925	.	-	ATGP1	Gypsy	LTR	33	tiny	144	medium	976450	pericentromeric	11129	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	12613307	12620939	AT3TE51930	.	-	ATGP1	Gypsy	LTR	7632	long	144	medium	968818	pericentromeric	3497	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	12622689	12623169	AT3TE51935	.	-	HELITRON5	Helitron	RC	480	short	56	medium	966588	pericentromeric	1267	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12623169	12624270	AT3TE51940	.	+	HELITRONY3	Helitron	RC	1101	short	1399	high	965487	pericentromeric	166	no-RdDM	no-CHH	.	.	.	.	.
Chr3	12625942	12629063	AT3TE51945	.	+	ATIS112A	Harbinger	DNA	3121	medium	173	medium	960694	pericentromeric	554	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12631165	12631939	AT3TE51950	.	+	HELITRONY1D	Helitron	RC	774	short	756	high	957818	pericentromeric	1446	no-RdDM	no-CHH	.	.	.	.	.
Chr3	12631939	12631980	AT3TE51955	.	+	ATREP11A	Helitron	RC	41	tiny	95	medium	957777	pericentromeric	2220	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	12632733	12633746	AT3TE51960	.	+	ATREP3	Helitron	RC	1013	short	1439	high	956011	pericentromeric	3014	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	12633774	12633839	AT3TE51965	.	-	ATHILA4A	Gypsy	LTR	65	tiny	310	high	955918	pericentromeric	4055	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12634288	12634348	AT3TE51970	.	-	ATHILA4A	Gypsy	LTR	60	tiny	310	high	955409	pericentromeric	4569	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	12635210	12636090	AT3TE51975	.	-	ATLINE1_6	L1	LINE	880	short	129	medium	953667	pericentromeric	5491	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12636090	12637255	AT3TE51980	.	-	ATHILA4A	Gypsy	LTR	1165	short	310	high	952502	pericentromeric	6371	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12637255	12640233	AT3TE51985	.	+	VANDAL21	MuDR	DNA	2978	medium	64	medium	949524	pericentromeric	7536	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12638406	12638482	AT3TE51990	.	+	SIMPLEHAT1	HAT	DNA	76	tiny	56	medium	951275	pericentromeric	8687	no-CHH	no-CHH	.	.	.	.	.
Chr3	12638482	12639266	AT3TE51995	.	+	SIMPLEGUY1	Harbinger	DNA	784	short	116	medium	950491	pericentromeric	8763	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12639266	12639500	AT3TE52000	.	+	HELITRONY3	Helitron	RC	234	short	1399	high	950257	pericentromeric	9547	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	12639501	12640068	AT3TE52005	.	-	ATHPOGON1	Pogo	DNA	568	short	174	medium	949689	pericentromeric	9781	.	.	.	.	.	.	.
Chr3	12640689	12641445	AT3TE52010	.	-	HARBINGER	Harbinger	DNA	756	short	90	medium	948312	pericentromeric	10970	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12643184	12643210	AT3TE52015	.	-	ATHILA4B_LTR	Gypsy	LTR	26	tiny	143	medium	946547	pericentromeric	13465	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12643210	12644346	AT3TE52020	.	-	ATHILA4A	Gypsy	LTR	1136	short	310	high	945411	pericentromeric	13491	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	12644346	12645573	AT3TE52025	.	+	VANDAL21	MuDR	DNA	1227	short	64	medium	944184	pericentromeric	14627	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	12645397	12643859	-	transcript_id-"cacb5f83-09fc-4566-aa77-238665db438e|3"
Chr3	12649251	12649326	AT3TE52035	.	+	ATREP10D	Helitron	RC	75	tiny	1295	high	940431	pericentromeric	17900	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12654173	12654508	AT3TE52050	.	+	ATIS112A	Harbinger	DNA	335	short	173	medium	935249	pericentromeric	12718	no-CHH	no-CHH	.	.	.	.	.
Chr3	12657060	12657310	AT3TE52060	.	-	ATDNA1T9A	MuDR	DNA	250	short	36	low	932447	pericentromeric	9916	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	12658392	12658504	AT3TE52065	.	+	LIMPET1	MuDR	DNA	112	short	116	medium	931253	pericentromeric	8722	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12658517	12658545	AT3TE52070	.	+	LIMPET1	MuDR	DNA	29	tiny	116	medium	931212	pericentromeric	8681	.	.	.	.	.	.	.
Chr3	12658545	12658865	AT3TE52075	.	+	LIMPET1	MuDR	DNA	320	short	116	medium	930892	pericentromeric	8361	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12658874	12658994	AT3TE52080	.	+	LIMPET1	MuDR	DNA	120	short	116	medium	930763	pericentromeric	8232	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12659435	12659603	AT3TE52085	.	-	VANDAL5A	MuDR	DNA	169	short	56	medium	930154	pericentromeric	7623	.	.	.	.	.	.	.
Chr3	12659603	12662089	AT3TE52090	.	-	ATREP5	Helitron	RC	2486	medium	624	high	927668	pericentromeric	5137	PolIV-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	12661440,12661440,12661436	12661167,12661210,12661288	-,-,-	transcript_id-"37899e3a-99c2-4a7a-9919-8fdcc72fdbe3|4",transcript_id-"49738dec-21ec-4704-90d6-b40565037a33|4",transcript_id-"94ac3830-1ee9-4f5b-a7ea-a8a368c7bca5|5"
Chr3	12662089	12662497	AT3TE52095	.	+	HELITRONY3	Helitron	RC	408	short	1399	high	927260	pericentromeric	4729	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12662497	12662564	AT3TE52100	.	-	ATREP4	Helitron	RC	67	tiny	832	high	927193	pericentromeric	4662	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	12663075	12663164	AT3TE52105	.	-	ATCOPIA88	Copia	LTR	89	tiny	8	low	926593	pericentromeric	4062	no-CHH	no-CHH	.	.	.	.	.
Chr3	12663164	12666581	AT3TE52110	.	-	ATCOPIA75	Copia	LTR	3417	medium	20	low	923176	pericentromeric	645	no-CHH	no-CHH	.	.	.	.	.
Chr3	12668913	12669186	AT3TE52115	.	+	ATDNAI27T9A	MuDR	DNA	273	short	116	medium	920571	pericentromeric	1087	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	12669317	12670623	AT3TE52120	.	+	LIMPET1	MuDR	DNA	1306	short	116	medium	919134	pericentromeric	1491	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	12673666	12674386	AT3TE52130	.	-	ATHILA8A	Gypsy	LTR	720	short	97	medium	915371	pericentromeric	5840	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12674386	12674732	AT3TE52135	.	+	ATGP6	Gypsy	LTR	346	short	25	low	915025	pericentromeric	6560	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12674732	12675672	AT3TE52140	.	-	ATHILA4	Gypsy	LTR	940	short	250	high	914085	pericentromeric	6906	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12675686	12675896	AT3TE52145	.	+	ATGP5	Gypsy	LTR	210	short	86	medium	913861	pericentromeric	7860	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	12675896	12675941	AT3TE52150	.	+	ATGP5	Gypsy	LTR	45	tiny	86	medium	913816	pericentromeric	8070	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12675949	12680670	AT3TE52155	.	-	ATLANTYS2	Gypsy	LTR	4721	medium	179	medium	909087	pericentromeric	8123	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	12678058	12678122	AT3TE52160	.	-	ATLANTYS2	Gypsy	LTR	64	tiny	179	medium	911635	pericentromeric	10232	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	12682779	12683139	AT3TE52170	.	-	ATENSPM9	En-Spm	DNA	360	short	97	medium	906618	pericentromeric	14953	no-RdDM	no-CHH	.	.	.	.	.
Chr3	12683400	12683434	AT3TE52175	.	-	ATHILA8B	Gypsy	LTR	34	tiny	78	medium	906323	pericentromeric	15574	no-RdDM	no-CHH	.	.	.	.	.
Chr3	12683434	12685549	AT3TE52180	.	-	ATHILA8A	Gypsy	LTR	2115	medium	97	medium	904208	pericentromeric	15608	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12685549	12685581	AT3TE52185	.	-	ATHILA8A	Gypsy	LTR	32	tiny	97	medium	904176	pericentromeric	17005	no-RdDM	no-CHH	.	.	.	.	.
Chr3	12686581	12686765	AT3TE52190	.	-	TA11	L1	LINE	184	short	157	medium	902992	pericentromeric	15821	no-RdDM	no-CHH	.	.	.	.	.
Chr3	12687126	12689930	AT3TE52195	.	-	TA11	L1	LINE	2804	medium	157	medium	899827	pericentromeric	12656	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	12692928	12693090	AT3TE52205	.	-	ATHAT1	HAT	DNA	162	short	105	medium	896667	pericentromeric	9496	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	12693105	12693475	AT3TE52210	.	-	ATREP11	Helitron	RC	370	short	841	high	896282	pericentromeric	9111	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	12693941	12695903	AT3TE52215	.	-	ATLANTYS2	Gypsy	LTR	1962	short	179	medium	893854	pericentromeric	6683	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	12695903	12695923	AT3TE52220	.	-	ATLANTYS2	Gypsy	LTR	20	tiny	179	medium	893834	pericentromeric	6663	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	12695928	12696191	AT3TE52225	.	+	ATHILA4C	Gypsy	LTR	263	short	206	high	893566	pericentromeric	6395	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	12696668	12697027	AT3TE52230	.	+	ATHILA8B	Gypsy	LTR	359	short	78	medium	892730	pericentromeric	5559	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	12697159	12697394	AT3TE52235	.	+	ATCOPIA94	Copia	LTR	235	short	39	low	892363	pericentromeric	5192	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12697394	12697874	AT3TE52240	.	-	ATHILA4C	Gypsy	LTR	480	short	206	high	891883	pericentromeric	4712	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	12698267	12698336	AT3TE52245	.	+	ATHILA8B	Gypsy	LTR	69	tiny	78	medium	891421	pericentromeric	4250	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12698336	12699440	AT3TE52250	.	+	ATHILA3	Gypsy	LTR	1104	short	243	high	890317	pericentromeric	3146	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	12699968	12699992	AT3TE52255	.	+	ATHILA6B	Gypsy	LTR	24	tiny	134	medium	889765	pericentromeric	2594	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	12699992	12700484	AT3TE52260	.	+	ATHILA5	Gypsy	LTR	492	short	131	medium	889273	pericentromeric	2102	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	12700743	12700878	AT3TE52265	.	+	ATHILA4A	Gypsy	LTR	135	short	310	high	888879	pericentromeric	1708	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	12701359	12701512	AT3TE52270	.	+	ATHILA7A	Gypsy	LTR	153	short	31	low	888245	pericentromeric	1074	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	12701512	12701728	AT3TE52275	.	+	ATHILA8A	Gypsy	LTR	216	short	97	medium	888029	pericentromeric	858	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	12701728	12702776	AT3TE52280	.	+	ATHILA8B	Gypsy	LTR	1048	short	78	medium	886981	pericentromeric	0	no-RdDM	no-RdDM	ExpressedAndAnnotated	12702431	12703366	+	transcript_id-"45c1699d-7408-44f2-aba8-9bda237400bf|3"
Chr3	12702776	12702817	AT3TE52285	.	+	ATHILA4A	Gypsy	LTR	41	tiny	310	high	886940	pericentromeric	0	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	12703374	12703834	AT3TE52290	.	+	ATHILA7	Gypsy	LTR	460	short	134	medium	885923	pericentromeric	152	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	12703834	12704086	AT3TE52295	.	+	ATCOPIA94	Copia	LTR	252	short	39	low	885671	pericentromeric	612	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	12704086	12705151	AT3TE52300	.	-	ATHILA4C	Gypsy	LTR	1065	short	206	high	884606	pericentromeric	864	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	12704800,12704800,12704800	12703914,12704103,12704309	-,-,-	transcript_id-"734eb728-ff02-43c7-bade-5a370e065bcc|5",transcript_id-"69c431cf-03aa-474f-bf06-0c2f082776cd|3",transcript_id-"3e1818ee-ef71-4636-ab63-c36c0d81d30d|5"
Chr3	12705154	12708553	AT3TE52305	.	-	ATHILA3	Gypsy	LTR	3399	medium	243	high	881204	pericentromeric	1932	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	12708122,12707967,12708136	12706040,12707552,12707554	-,-,-	transcript_id-"722f680f-3327-4c11-960c-2ed246b4cfc9|18",transcript_id-"cc5691c8-8c7a-4a65-989d-efc31c96c20b|3",transcript_id-"108ae756-bee0-4517-95e8-99bcdeb5c235|116"
Chr3	12708553	12709039	AT3TE52310	.	-	ATHILA5	Gypsy	LTR	486	short	131	medium	880718	pericentromeric	5331	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	12709084	12709120	AT3TE52315	.	-	ATHILA5	Gypsy	LTR	36	tiny	131	medium	880637	pericentromeric	5862	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	12709120	12710179	AT3TE52320	.	-	ATHILA5	Gypsy	LTR	1059	short	131	medium	879578	pericentromeric	5898	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	12710492	12710796	AT3TE52325	.	-	ATHILA0_I	Gypsy	LTR	304	short	138	medium	878961	pericentromeric	7270	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	12710852	12711711	AT3TE52330	.	-	ATHILA3	Gypsy	LTR	859	short	243	high	878046	pericentromeric	7630	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	12711711	12713629	AT3TE52335	.	+	ATHILA4	Gypsy	LTR	1918	short	250	high	876128	pericentromeric	8489	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	12713631	12714051	AT3TE52340	.	+	ATHILA4B_LTR	Gypsy	LTR	420	short	143	medium	875706	pericentromeric	10409	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	12714051	12714882	AT3TE52345	.	-	ATHILA3	Gypsy	LTR	831	short	243	high	874875	pericentromeric	10829	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	12714882	12714934	AT3TE52350	.	-	ATHILA6A	Gypsy	LTR	52	tiny	247	high	874823	pericentromeric	11660	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12714934	12717926	AT3TE52355	.	-	ATHILA3	Gypsy	LTR	2992	medium	243	high	871831	pericentromeric	11712	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	12717926	12717948	AT3TE52360	.	-	ATHILA3	Gypsy	LTR	22	tiny	243	high	871809	pericentromeric	14704	RDR6-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	12717948	12725732	AT3TE52365	.	-	ATHILA4C	Gypsy	LTR	7784	long	206	high	864025	pericentromeric	14726	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	12721975	12723758	AT3TE52370	.	+	ATHILA2	Gypsy	LTR	1783	short	413	high	865999	pericentromeric	18753	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12725732	12725769	AT3TE52375	.	-	ATHILA4B_LTR	Gypsy	LTR	37	tiny	143	medium	863988	pericentromeric	22510	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	12725897	12726110	AT3TE52380	.	-	HELITRON5	Helitron	RC	213	short	56	medium	863647	pericentromeric	22675	no-RdDM	no-CHH	.	.	.	.	.
Chr3	12726428	12729643	AT3TE52385	.	-	HELITRON4	Helitron	RC	3215	medium	199	medium	860114	pericentromeric	23206	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12727228	12728410	AT3TE52390	.	-	HELITRON1	Helitron	RC	1182	short	130	medium	861347	pericentromeric	24006	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12728410	12728433	AT3TE52395	.	-	HELITRON1	Helitron	RC	23	tiny	130	medium	861324	pericentromeric	25188	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	12730119	12731286	AT3TE52400	.	-	ATREP10D	Helitron	RC	1167	short	1295	high	858471	pericentromeric	26897	no-CHH	no-CHH	.	.	.	.	.
Chr3	12734327	12734681	AT3TE52410	.	-	ATDNA12T3_2	.	DNA	354	short	660	high	855076	pericentromeric	31105	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	12734817	12737882	AT3TE52415	.	-	ATGP1	Gypsy	LTR	3065	medium	144	medium	851875	pericentromeric	31101	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	12739590	12741997	AT3TE52420	.	+	ATIS112A	Harbinger	DNA	2407	medium	173	medium	847760	pericentromeric	26986	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	12742573	12742872	AT3TE52425	.	+	HELITRON1	Helitron	RC	299	short	130	medium	846885	pericentromeric	26111	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12742872	12744884	AT3TE52430	.	+	HELITRON1	Helitron	RC	2012	medium	130	medium	844873	pericentromeric	24099	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12744892	12747271	AT3TE52435	.	+	ATHILA4C	Gypsy	LTR	2379	medium	206	high	842486	pericentromeric	21712	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	12747271	12748444	AT3TE52440	.	-	ATHILA4C	Gypsy	LTR	1173	short	206	high	841313	pericentromeric	20539	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	12748444	12755926	AT3TE52445	.	+	ATHILA4C	Gypsy	LTR	7482	long	206	high	833831	pericentromeric	13057	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	12753546	12754713	AT3TE52450	.	+	HELITRON4	Helitron	RC	1167	short	199	medium	835044	pericentromeric	14270	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	12755927	12756023	AT3TE52455	.	+	ATHILA4	Gypsy	LTR	96	tiny	250	high	833734	pericentromeric	12960	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	12757464	12757509	AT3TE52460	.	-	ATCOPIA54	Copia	LTR	45	tiny	18	low	832248	pericentromeric	11474	no-CHH	no-CHH	.	.	.	.	.
Chr3	12757509	12758955	AT3TE52465	.	+	ATCOPIA65	Copia	LTR	1446	short	34	low	830802	pericentromeric	10028	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	12758955	12760033	AT3TE52470	.	-	ATHILA4B_LTR	Gypsy	LTR	1078	short	143	medium	829724	pericentromeric	8950	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	12760033	12760207	AT3TE52475	.	+	ATHILA4B_LTR	Gypsy	LTR	174	short	143	medium	829550	pericentromeric	8776	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	12760207	12760288	AT3TE52480	.	+	ATHILA4B_LTR	Gypsy	LTR	81	tiny	143	medium	829469	pericentromeric	8695	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	12760288	12761147	AT3TE52485	.	-	ATHILA4A	Gypsy	LTR	859	short	310	high	828610	pericentromeric	7836	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	12761241	12762244	AT3TE52490	.	-	ATHILA4	Gypsy	LTR	1003	short	250	high	827513	pericentromeric	6739	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	12762244	12766331	AT3TE52495	.	+	ATLINEIII	L1	LINE	4087	medium	196	medium	823426	pericentromeric	2652	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	12766331	12766383	AT3TE52500	.	+	ATHILA4A	Gypsy	LTR	52	tiny	310	high	823374	pericentromeric	2600	DCL3-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	12766383	12766751	AT3TE52505	.	+	ATHILA4D_LTR	Gypsy	LTR	368	short	106	medium	823006	pericentromeric	2232	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	12766761	12768865	AT3TE52510	.	+	ATHILA	Gypsy	LTR	2104	medium	198	medium	820892	pericentromeric	118	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	12766528	12767512	+	transcript_id-"154362ad-f1db-498b-9938-13704e6ce636|16"
Chr3	12769160	12769789	AT3TE52515	.	+	ATGP8	Gypsy	LTR	629	short	92	medium	819968	pericentromeric	0	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12775694	12783259	AT3TE52540	.	+	VANDAL21	MuDR	DNA	7565	long	64	medium	806498	pericentromeric	2155	no-RdDM	no-RdDM	ExpressedAndAnnotated	12779359,12782087	12780179,12780278	+,-	transcript_id-"9c1b59ce-04ec-4628-9dae-2f4a1450b79f|3",transcript_id-"befae09d-9082-43b4-a9ed-d6775cb11ea6|9"
Chr3	12780248	12780269	AT3TE52545	.	+	VANDAL21	MuDR	DNA	22	tiny	64	medium	809488	pericentromeric	6708	.	.	LowExpressed	.	.	.	.
Chr3	12781275	12782461	AT3TE52550	.	-	ATHILA4A	Gypsy	LTR	1186	short	310	high	807296	pericentromeric	7736	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	12782087,12782323	12780278,12782001	-,-	transcript_id-"befae09d-9082-43b4-a9ed-d6775cb11ea6|9",transcript_id-"15a6eac4-6a04-4c19-9b1d-499c3bca93bd|3"
Chr3	12783259	12784004	AT3TE52555	.	+	VANDAL21	MuDR	DNA	745	short	64	medium	805753	pericentromeric	9720	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12786918	12786949	AT3TE52565	.	+	ATREP4	Helitron	RC	31	tiny	832	high	802808	pericentromeric	8911	no-CHH	no-CHH	.	.	.	.	.
Chr3	12786949	12788003	AT3TE52570	.	+	ATREP3	Helitron	RC	1054	short	1439	high	801754	pericentromeric	7857	no-CHH	no-CHH	.	.	.	.	.
Chr3	12788840	12789256	AT3TE52575	.	-	TA11	L1	LINE	416	short	157	medium	800501	pericentromeric	6604	no-CHH	no-CHH	.	.	.	.	.
Chr3	12789256	12791978	AT3TE52580	.	-	ATLINE1_5	L1	LINE	2722	medium	91	medium	797779	pericentromeric	3882	no-CHH	no-CHH	.	.	.	.	.
Chr3	12791978	12792047	AT3TE52585	.	-	ATLINE1_6	L1	LINE	69	tiny	129	medium	797710	pericentromeric	3813	no-CHH	no-CHH	.	.	.	.	.
Chr3	12792547	12795147	AT3TE52590	.	-	ATHAT10	HAT	DNA	2600	medium	35	low	794610	pericentromeric	713	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12795147	12795660	AT3TE52595	.	-	ATHAT10	HAT	DNA	513	short	35	low	794097	pericentromeric	200	no-CHH	no-CHH	.	.	.	.	.
Chr3	12795660	12795863	AT3TE52600	.	-	ATHAT10	HAT	DNA	203	short	35	low	793894	pericentromeric	0	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	12796901	12798614	AT3TE52605	.	+	HELITRONY3	Helitron	RC	1713	short	1399	high	791143	pericentromeric	30	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	12798614	12799305	AT3TE52610	.	-	ATREP3	Helitron	RC	691	short	1439	high	790452	pericentromeric	1743	no-CHH	no-RdDM	.	.	.	.	.
Chr3	12799305	12799328	AT3TE52615	.	+	HELITRONY3	Helitron	RC	23	tiny	1399	high	790429	pericentromeric	2434	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	12800050	12800158	AT3TE52620	.	-	HELITRON5	Helitron	RC	108	short	56	medium	789599	pericentromeric	3179	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	12800158	12806217	AT3TE52625	.	-	HELITRON1	Helitron	RC	6059	long	130	medium	783540	pericentromeric	3287	no-RdDM	no-RdDM	ExpressedAndAnnotated	12804249,12804806,12804028,12804029	12803896,12803911,12805057,12804946	-,-,+,+	transcript_id-"e9d9ee3a-a5c9-40a7-8c81-6d87ae9d29b8|4",transcript_id-"4b42b806-986b-4399-b2de-979300de964a|6",transcript_id-"86a6fe27-820c-43ab-b4bc-3e668dfce537|6",transcript_id-"20fb7707-26b9-4c5d-8615-4c03a1a3c5f7|8"
Chr3	12803910	12804796	AT3TE52630	.	-	SADHU	.	Unassigned	886	short	16	low	784961	pericentromeric	7039	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	12804806	12803911	-	transcript_id-"4b42b806-986b-4399-b2de-979300de964a|6"
Chr3	12806537	12806683	AT3TE52635	.	+	ATSINE4	.	SINE	146	short	98	medium	783074	pericentromeric	9666	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12807500	12808648	AT3TE52640	.	+	ATDNA2T9C	MuDR	DNA	1148	short	242	high	781109	pericentromeric	10629	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	12808648	12809127	AT3TE52645	.	+	ATDNA2T9A	MuDR	DNA	479	short	48	low	780630	pericentromeric	11777	no-CHH	no-CHH	.	.	.	.	.
Chr3	12809127	12809251	AT3TE52650	.	+	ATDNA2T9B	MuDR	DNA	124	short	26	low	780506	pericentromeric	12256	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	12809251	12809951	AT3TE52655	.	-	HELITRONY1E	Helitron	RC	700	short	447	high	779806	pericentromeric	12380	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	12809961	12810151	AT3TE52660	.	+	ATREP10B	Helitron	RC	190	short	491	high	779606	pericentromeric	13090	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	12810212	12813723	AT3TE52665	.	+	VANDAL21	MuDR	DNA	3511	medium	64	medium	776034	pericentromeric	13341	no-RdDM	no-RdDM	ExpressedAndAnnotated	12813095,12813139	12813288,12813274	+,+	transcript_id-"271625c8-9710-4e04-b5d9-6b27dd73122f|4",transcript_id-"bf63101d-8e75-4455-831e-86c99aa6cdc1|11"
Chr3	12813723	12814728	AT3TE52670	.	-	ATREP11	Helitron	RC	1005	short	841	high	775029	pericentromeric	16852	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	12814728	12816640	AT3TE52675	.	+	VANDAL3	MuDR	DNA	1912	short	177	medium	773117	pericentromeric	17857	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	12816640	12817478	AT3TE52680	.	+	ATREP10D	Helitron	RC	838	short	1295	high	772279	pericentromeric	19769	no-CHH	no-CHH	.	.	.	.	.
Chr3	12817478	12817515	AT3TE52685	.	-	HELITRONY3A	Helitron	RC	37	tiny	49	low	772242	pericentromeric	20607	no-RdDM	no-CHH	.	.	.	.	.
Chr3	12818488	12818530	AT3TE52690	.	-	ATLINE1A	L1	LINE	42	tiny	289	high	771227	pericentromeric	21617	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12818530	12820578	AT3TE52695	.	-	ATLINE1_5	L1	LINE	2048	medium	91	medium	769179	pericentromeric	21659	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	12820578	12820640	AT3TE52700	.	+	ATMU1	MuDR	DNA	62	tiny	59	medium	769117	pericentromeric	23707	RDR6-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	12820671	12821745	AT3TE52705	.	+	ATLINE1_6	L1	LINE	1074	short	129	medium	768012	pericentromeric	23800	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	12822387	12822465	AT3TE52710	.	+	ATSINE4	.	SINE	78	tiny	98	medium	767292	pericentromeric	25516	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	12822682	12823507	AT3TE52715	.	+	ATMUN1	MuDR	DNA	825	short	107	medium	766250	pericentromeric	25811	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12824439	12824487	AT3TE52720	.	+	ATSINE4	.	SINE	48	tiny	98	medium	765270	pericentromeric	27568	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	12824487	12827319	AT3TE52725	.	-	ATGP1	Gypsy	LTR	2832	medium	144	medium	762438	pericentromeric	27616	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	12827524	12828689	AT3TE52730	.	+	ATHILA7A	Gypsy	LTR	1165	short	31	low	761068	pericentromeric	30653	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	12827374	12827839	+	transcript_id-"ab10ad32-89a4-458c-80e9-56c8669f372a|5"
Chr3	12828219	12828482	AT3TE52735	.	+	ATCOPIA94	Copia	LTR	263	short	39	low	761275	pericentromeric	31348	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	12828693	12829594	AT3TE52740	.	+	ATHILA8B	Gypsy	LTR	901	short	78	medium	760163	pericentromeric	31822	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	12829594	12829688	AT3TE52745	.	+	ATHILA3	Gypsy	LTR	94	tiny	243	high	760069	pericentromeric	32723	no-RdDM	no-CHH	.	.	.	.	.
Chr3	12830136	12830579	AT3TE52750	.	+	ATHILA5	Gypsy	LTR	443	short	131	medium	759178	pericentromeric	33265	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	12832688	12833324	AT3TE52755	.	+	HELITRON4	Helitron	RC	636	short	199	medium	756433	pericentromeric	35817	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	12835711	12837218	AT3TE52765	.	+	HELITRONY2	Helitron	RC	1507	short	198	medium	752539	pericentromeric	37852	no-RdDM	no-CHH	.	.	.	.	.
Chr3	12837218	12837621	AT3TE52770	.	+	ATREP10A	Helitron	RC	403	short	279	high	752136	pericentromeric	37449	no-RdDM	no-CHH	.	.	.	.	.
Chr3	12838108	12847071	AT3TE52775	.	+	ATLANTYS2	Gypsy	LTR	8963	long	179	medium	742686	pericentromeric	27999	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	12844686,12845915	12843163,12843285	-,-	transcript_id-"5302f05e-1ad2-4c28-b226-f6e0c70fe01c|25",transcript_id-"2618c2f9-5019-418c-9720-66a2192a5537|6"
Chr3	12847071	12847100	AT3TE52780	.	+	ATLANTYS2	Gypsy	LTR	29	tiny	179	medium	742657	pericentromeric	27970	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	12848444	12848468	AT3TE52785	.	-	ATREP9	Helitron	RC	24	tiny	201	high	741289	pericentromeric	26602	no-CHH	no-CHH	.	.	.	.	.
Chr3	12848468	12849261	AT3TE52790	.	+	ATMUN1	MuDR	DNA	793	short	107	medium	740496	pericentromeric	25809	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12849261	12849724	AT3TE52795	.	+	ATREP5	Helitron	RC	463	short	624	high	740033	pericentromeric	25346	DCL3-RdDM	no-RdDM	ExpressedAndAnnotated	12849760	12849579	-	transcript_id-"8651b2d4-13c7-492c-a91b-56a879127f6f|3"
Chr3	12849778	12864029	AT3TE52800	.	+	ATLINE1_6	L1	LINE	14251	long	129	medium	725728	pericentromeric	11041	no-RdDM	no-RdDM	ExpressedAndAnnotated	12858034	12859943	+	transcript_id-"79386cfa-c8b6-4789-b4f6-f5faf753beb5|3"
Chr3	12853594	12861862	AT3TE52805	.	+	ATGP1	Gypsy	LTR	8268	long	144	medium	727895	pericentromeric	13208	no-RdDM	no-RdDM	ExpressedAndAnnotated	12858034	12859943	+	transcript_id-"79386cfa-c8b6-4789-b4f6-f5faf753beb5|3"
Chr3	12864518	12864596	AT3TE52815	.	+	ATSINE4	.	SINE	78	tiny	98	medium	725161	pericentromeric	10474	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12864757	12864809	AT3TE52820	.	-	HELITRONY1E	Helitron	RC	52	tiny	447	high	724948	pericentromeric	10261	DCL3-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12864809	12865247	AT3TE52825	.	+	HELITRONY1E	Helitron	RC	438	short	447	high	724510	pericentromeric	9823	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12865247	12865633	AT3TE52830	.	-	ATMUN1	MuDR	DNA	386	short	107	medium	724124	pericentromeric	9437	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12865633	12866120	AT3TE52835	.	-	ATREP11	Helitron	RC	487	short	841	high	723637	pericentromeric	8950	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12866570	12866648	AT3TE52840	.	+	ATSINE4	.	SINE	78	tiny	98	medium	723109	pericentromeric	8422	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12866843	12868120	AT3TE52845	.	+	ATREP15	Helitron	RC	1277	short	1003	high	721637	pericentromeric	6950	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12867267	12867666	AT3TE52850	.	+	ATMUN1	MuDR	DNA	399	short	107	medium	722091	pericentromeric	7404	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12868120	12868263	AT3TE52855	.	-	BRODYAGA1	MuDR	DNA	143	short	251	high	721494	pericentromeric	6807	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12868912	12870152	AT3TE52860	.	-	VANDAL5	MuDR	DNA	1240	short	85	medium	719605	pericentromeric	4918	no-RdDM	no-RdDM	ExpressedAndAnnotated	12868561	12869157	+	transcript_id-"c04d4a71-c196-4e68-9840-f0753060116b|3"
Chr3	12873296	12874492	AT3TE52870	.	+	HELITRONY1E	Helitron	RC	1196	short	447	high	715265	pericentromeric	578	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	12874492	12875210	AT3TE52875	.	+	ATREP3	Helitron	RC	718	short	1439	high	714547	pericentromeric	0	no-RdDM	no-CHH	.	.	.	.	.
Chr3	12875210	12875361	AT3TE52880	.	-	ATREP15	Helitron	RC	151	short	1003	high	714396	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	12876190	12876638	AT3TE52885	.	+	HELITRONY1B	Helitron	RC	448	short	414	high	713119	pericentromeric	0	no-RdDM	no-CHH	.	.	.	.	.
Chr3	12877985	12878790	AT3TE52890	.	-	HELITRONY3	Helitron	RC	805	short	1399	high	710967	pericentromeric	563	no-RdDM	no-CHH	.	.	.	.	.
Chr3	12879292	12879872	AT3TE52895	.	-	BRODYAGA1	MuDR	DNA	580	short	251	high	709885	pericentromeric	1870	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	12879872	12879956	AT3TE52900	.	-	ATREP10A	Helitron	RC	84	tiny	279	high	709801	pericentromeric	2450	no-CHH	no-CHH	.	.	.	.	.
Chr3	12882972	12882993	AT3TE52910	.	+	HELITRONY3	Helitron	RC	21	tiny	1399	high	706764	pericentromeric	5550	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12882993	12883540	AT3TE52915	.	+	ATREP10D	Helitron	RC	547	short	1295	high	706217	pericentromeric	5571	no-CHH	no-CHH	.	.	.	.	.
Chr3	12883540	12884087	AT3TE52920	.	+	ATREP10A	Helitron	RC	547	short	279	high	705670	pericentromeric	6118	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	12884087	12884580	AT3TE52925	.	+	ATREP11	Helitron	RC	493	short	841	high	705177	pericentromeric	6665	no-RdDM	no-CHH	.	.	.	.	.
Chr3	12884580	12884662	AT3TE52930	.	-	ATREP15	Helitron	RC	82	tiny	1003	high	705095	pericentromeric	7158	no-RdDM	no-CHH	.	.	.	.	.
Chr3	12884842	12896243	AT3TE52935	.	-	HELITRON2	Helitron	RC	11401	long	194	medium	693514	pericentromeric	7420	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	12896255	12896801	AT3TE52940	.	+	BRODYAGA1A	MuDR	DNA	546	short	586	high	692956	pericentromeric	11075	no-CHH	no-CHH	.	.	.	.	.
Chr3	12897631	12897855	AT3TE52945	.	+	ATHATN8	HAT	DNA	224	short	15	low	691902	pericentromeric	10021	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	12899105	12899126	AT3TE52950	.	-	HELITRONY2	Helitron	RC	21	tiny	198	medium	690631	pericentromeric	8750	no-CHH	no-CHH	.	.	.	.	.
Chr3	12899134	12899426	AT3TE52955	.	-	HELITRON2	Helitron	RC	292	short	194	medium	690331	pericentromeric	8450	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12899426	12899467	AT3TE52960	.	-	HELITRONY2	Helitron	RC	41	tiny	198	medium	690290	pericentromeric	8409	no-CHH	no-CHH	.	.	.	.	.
Chr3	12899988	12900286	AT3TE52965	.	-	HELITRONY1D	Helitron	RC	298	short	756	high	689471	pericentromeric	7590	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	12900286	12901426	AT3TE52970	.	-	HELITRONY1C	Helitron	RC	1140	short	120	medium	688331	pericentromeric	6450	no-CHH	no-CHH	.	.	.	.	.
Chr3	12901426	12901855	AT3TE52975	.	-	ATREP3	Helitron	RC	429	short	1439	high	687902	pericentromeric	6021	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	12903161	12901609	-	transcript_id-"1308076e-755c-4dc3-95e6-60f71e6ecb5c|3"
Chr3	12905319	12906524	AT3TE52985	.	+	ATDNA2T9C	MuDR	DNA	1205	short	242	high	683233	pericentromeric	1352	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	12906524	12906558	AT3TE52990	.	+	VANDALNX2	MuDR	DNA	34	tiny	37	low	683199	pericentromeric	1318	no-CHH	no-RdDM	LowExpressed	.	.	.	.
Chr3	12906597	12907864	AT3TE52995	.	+	Unassigned	.	Unassigned	1267	short	.	low	681893	pericentromeric	12	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	12909036	12909667	AT3TE53000	.	+	VANDAL3	MuDR	DNA	631	short	177	medium	680090	pericentromeric	0	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	12910343	12910539	AT3TE53005	.	+	VANDALNX2	MuDR	DNA	196	short	37	low	679218	pericentromeric	729	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12911179	12913466	AT3TE53010	.	+	ATIS112A	Harbinger	DNA	2287	medium	173	medium	676291	pericentromeric	1565	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	12913567	12914213	AT3TE53015	.	-	ATGP8	Gypsy	LTR	646	short	92	medium	675544	pericentromeric	3953	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12915148	12915281	AT3TE53020	.	-	ATGP2N	Gypsy	LTR	133	short	54	medium	674476	pericentromeric	5534	no-RdDM	no-CHH	.	.	.	.	.
Chr3	12916066	12916699	AT3TE53025	.	-	ATGP8	Gypsy	LTR	633	short	92	medium	673058	pericentromeric	6452	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	12917699	12918585	AT3TE53030	.	+	ATIS112A	Harbinger	DNA	886	short	173	medium	671172	pericentromeric	8085	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	12918699	12919529	AT3TE53035	.	-	ATHILA4A	Gypsy	LTR	830	short	310	high	670228	pericentromeric	9085	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12919529	12919568	AT3TE53040	.	-	ATENSPM10	En-Spm	DNA	39	tiny	81	medium	670189	pericentromeric	9915	no-RdDM	no-CHH	.	.	.	.	.
Chr3	12919568	12927696	AT3TE53045	.	-	ATENSPM10	En-Spm	DNA	8128	long	81	medium	662061	pericentromeric	9954	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	12920264	12919983	-	transcript_id-"db8ee6bc-e312-4028-918f-cc61ec3c9bdf|3"
Chr3	12927696	12927866	AT3TE53050	.	-	ATHILA4A	Gypsy	LTR	170	short	310	high	661891	pericentromeric	18082	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12928244	12928913	AT3TE53055	.	+	HELITRON1	Helitron	RC	669	short	130	medium	660844	pericentromeric	18630	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12930773	12932808	AT3TE53060	.	+	HELITRON4	Helitron	RC	2035	medium	199	medium	656949	pericentromeric	17304	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	12931066	12931143	AT3TE53065	.	+	HELITRON5	Helitron	RC	77	tiny	56	medium	658614	pericentromeric	18969	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12932808	12932971	AT3TE53070	.	+	HELITRON1	Helitron	RC	163	short	130	medium	656786	pericentromeric	17141	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12932971	12933247	AT3TE53075	.	-	ATHILA0_I	Gypsy	LTR	276	short	138	medium	656510	pericentromeric	16865	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12933254	12943236	AT3TE53080	.	+	ATLANTYS2	Gypsy	LTR	9982	long	179	medium	646521	pericentromeric	6876	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	12937769	12940613	AT3TE53085	.	+	ATHILA4A	Gypsy	LTR	2844	medium	310	high	649144	pericentromeric	9499	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	12940613	12941691	AT3TE53090	.	+	ATHILA4A	Gypsy	LTR	1078	short	310	high	648066	pericentromeric	8421	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	12943252	12946258	AT3TE53095	.	-	ATLANTYS2	Gypsy	LTR	3006	medium	179	medium	643499	pericentromeric	3854	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	12946309	12949416	AT3TE53100	.	-	ATGP2N	Gypsy	LTR	3107	medium	54	medium	640341	pericentromeric	696	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	12949416	12950007	AT3TE53105	.	+	ATGP10	Gypsy	LTR	591	short	165	medium	639750	pericentromeric	105	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	12951794	12951882	AT3TE53110	.	+	ATGP10	Gypsy	LTR	88	tiny	165	medium	637875	pericentromeric	0	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	12951882	12952468	AT3TE53115	.	+	ATGP10	Gypsy	LTR	586	short	165	medium	637289	pericentromeric	0	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	12953130	12953246	AT3TE53120	.	+	ATGP10	Gypsy	LTR	116	short	165	medium	636511	pericentromeric	537	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12953320	12953350	AT3TE53125	.	-	ATENSPM5	En-Spm	DNA	30	tiny	111	medium	636407	pericentromeric	727	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12953350	12954368	AT3TE53130	.	-	ATENSPM6	En-Spm	DNA	1018	short	151	medium	635389	pericentromeric	757	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12954406	12954524	AT3TE53135	.	+	TAG2	HAT	DNA	118	short	86	medium	635233	pericentromeric	1813	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12955141	12955246	AT3TE53140	.	+	ATCOPIA28	Copia	LTR	105	short	81	medium	634511	pericentromeric	2548	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	12956241	12956446	AT3TE53145	.	+	ATREP15	Helitron	RC	205	short	1003	high	633311	pericentromeric	3648	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	12956447	12956518	AT3TE53150	.	+	HELITRONY3	Helitron	RC	72	tiny	1399	high	633239	pericentromeric	3853	.	.	.	.	.	.	.
Chr3	12956518	12957799	AT3TE53155	.	-	HELITRONY3	Helitron	RC	1281	short	1399	high	631958	pericentromeric	3925	no-CHH	no-CHH	.	.	.	.	.
Chr3	12957799	12957841	AT3TE53160	.	-	HELITRONY3	Helitron	RC	42	tiny	1399	high	631916	pericentromeric	5206	no-CHH	no-CHH	.	.	.	.	.
Chr3	12959862	12960176	AT3TE53165	.	-	ATGP8	Gypsy	LTR	314	short	92	medium	629581	pericentromeric	7269	PolIV-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	12960114	12959920	-	transcript_id-"e51324a6-21a8-44f3-9ed3-8e6edf361725|3"
Chr3	12960373	12968466	AT3TE53170	.	-	ATGP1	Gypsy	LTR	8093	long	144	medium	621291	pericentromeric	7780	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	12970374	12970777	AT3TE53175	.	+	ATREP10D	Helitron	RC	403	short	1295	high	618980	pericentromeric	17781	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	12972303	12972386	AT3TE53180	.	-	HELITRON2	Helitron	RC	83	tiny	194	medium	617371	pericentromeric	19710	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	12972386	12976660	AT3TE53185	.	-	HELITRON1	Helitron	RC	4274	medium	130	medium	613097	pericentromeric	19793	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	12979232	12980194	AT3TE53195	.	-	HELITRON3	Helitron	RC	962	short	53	medium	609563	pericentromeric	26639	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	12980194	12981142	AT3TE53200	.	-	HELITRON5	Helitron	RC	948	short	56	medium	608615	pericentromeric	27601	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	12981142	12981185	AT3TE53205	.	-	HELITRON5	Helitron	RC	43	tiny	56	medium	608572	pericentromeric	28549	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	12982659	12982699	AT3TE53210	.	+	ATHILA2	Gypsy	LTR	40	tiny	413	high	607058	pericentromeric	30066	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	12982699	12993656	AT3TE53215	.	+	ATHILA2	Gypsy	LTR	10957	long	413	high	596101	pericentromeric	30106	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	12990592	12992677	+	transcript_id-"45cd5c83-4dcc-422a-920a-9d38a2e2c57e|11"
Chr3	12994724	12996552	AT3TE53220	.	-	ATENSPM2	En-Spm	DNA	1828	short	114	medium	593205	pericentromeric	35905	no-RdDM	no-CHH	.	.	.	.	.
Chr3	12996801	12996843	AT3TE53225	.	-	ATENSPM2	En-Spm	DNA	42	tiny	114	medium	592914	pericentromeric	35614	no-RdDM	no-CHH	.	.	.	.	.
Chr3	12996843	12998933	AT3TE53230	.	-	ATENSPM6	En-Spm	DNA	2090	medium	151	medium	590824	pericentromeric	33524	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	12998933	12998962	AT3TE53235	.	-	ATENSPM9	En-Spm	DNA	29	tiny	97	medium	590795	pericentromeric	33495	no-RdDM	no-CHH	.	.	.	.	.
Chr3	13001662	13016784	AT3TE53245	.	-	HELITRON4	Helitron	RC	15122	long	199	medium	572973	pericentromeric	15673	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	13007200	13007248	AT3TE53250	.	-	HELITRON4	Helitron	RC	48	tiny	199	medium	582509	pericentromeric	25209	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	13017505	13017704	AT3TE53290	.	-	ATHILA4A	Gypsy	LTR	199	short	310	high	572053	pericentromeric	14753	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	13017962	13018691	AT3TE53295	.	-	ATHILA4C	Gypsy	LTR	729	short	206	high	571066	pericentromeric	13766	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	13018691	13019487	AT3TE53300	.	-	ATHILA4A	Gypsy	LTR	796	short	310	high	570270	pericentromeric	12970	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	13019487	13022307	AT3TE53305	.	-	ATHILA4C	Gypsy	LTR	2820	medium	206	high	567450	pericentromeric	10150	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	13022307	13022446	AT3TE53310	.	+	ATHILA4B_LTR	Gypsy	LTR	139	short	143	medium	567311	pericentromeric	10011	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13023324	13023457	AT3TE53315	.	+	ATHATN1	HAT	DNA	133	short	69	medium	566300	pericentromeric	9000	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	13023457	13024576	AT3TE53320	.	+	ATHILA4B_LTR	Gypsy	LTR	1119	short	143	medium	565181	pericentromeric	7881	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	13023491	13023858	+	transcript_id-"4d362a80-46eb-424a-b709-77fb71453aef|32"
Chr3	13024578	13026505	AT3TE53325	.	-	ATHILA4C	Gypsy	LTR	1927	short	206	high	563252	pericentromeric	5952	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	13026505	13026591	AT3TE53330	.	-	ATHILA4C	Gypsy	LTR	86	tiny	206	high	563166	pericentromeric	5866	no-RdDM	no-CHH	.	.	.	.	.
Chr3	13026591	13026615	AT3TE53335	.	-	ATHILA8A	Gypsy	LTR	24	tiny	97	medium	563142	pericentromeric	5842	no-CHH	no-CHH	.	.	.	.	.
Chr3	13026615	13027856	AT3TE53340	.	-	ATHILA8A	Gypsy	LTR	1241	short	97	medium	561901	pericentromeric	4601	no-RdDM	no-CHH	.	.	.	.	.
Chr3	13028277	13028644	AT3TE53345	.	-	ATREP4	Helitron	RC	367	short	832	high	561113	pericentromeric	3813	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13028719	13030465	AT3TE53350	.	+	ATLANTYS3	Gypsy	LTR	1746	short	142	medium	559292	pericentromeric	1992	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	13035531	13035620	AT3TE53370	.	+	AT9NMU1	MuDR	DNA	89	tiny	45	low	554137	pericentromeric	183	no-CHH	no-CHH	.	.	.	.	.
Chr3	13035620	13036386	AT3TE53375	.	+	ATLINE1_5	L1	LINE	766	short	91	medium	553371	pericentromeric	272	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	13036386	13036972	AT3TE53380	.	-	ARNOLD3	MuDR	DNA	586	short	45	low	552785	pericentromeric	1038	no-CHH	no-CHH	.	.	.	.	.
Chr3	13036972	13037148	AT3TE53385	.	-	ATMUN1	MuDR	DNA	176	short	107	medium	552609	pericentromeric	1624	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13037148	13037177	AT3TE53390	.	-	BRODYAGA2	MuDR	DNA	29	tiny	525	high	552580	pericentromeric	1800	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13038678	13038917	AT3TE53395	.	+	ATREP15	Helitron	RC	239	short	1003	high	550840	pericentromeric	1313	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	13038917	13038963	AT3TE53400	.	+	ATMUNX1	MuDR	DNA	46	tiny	155	medium	550794	pericentromeric	1267	no-CHH	no-CHH	.	.	.	.	.
Chr3	13038963	13039724	AT3TE53405	.	+	ATREP11	Helitron	RC	761	short	841	high	550033	pericentromeric	506	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr3	13040112	13040191	AT3TE53410	.	+	ATSINE4	.	SINE	79	tiny	98	medium	549566	pericentromeric	39	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr3	13040434	13041429	AT3TE53415	.	-	ATN9_1	MuDR	DNA	995	short	65	medium	548328	pericentromeric	90	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	13042682	13042759	AT3TE53420	.	+	ATSINE4	.	SINE	77	tiny	98	medium	546998	pericentromeric	2338	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13044328	13044445	AT3TE53425	.	-	ATGP7	Gypsy	LTR	117	short	47	low	545312	pericentromeric	3376	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	13044776	13046686	AT3TE53430	.	-	ATREP10D	Helitron	RC	1910	short	1295	high	543071	pericentromeric	1135	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	13046686	13046711	AT3TE53435	.	+	ATREP10D	Helitron	RC	25	tiny	1295	high	543046	pericentromeric	1110	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13046711	13046793	AT3TE53440	.	+	ATREP10D	Helitron	RC	82	tiny	1295	high	542964	pericentromeric	1028	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13049598	13049907	AT3TE53450	.	+	ATMUNX1	MuDR	DNA	309	short	155	medium	539850	pericentromeric	589	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	13051052	13051428	AT3TE53455	.	-	ATREP4	Helitron	RC	376	short	832	high	538329	pericentromeric	2043	no-CHH	no-CHH	.	.	.	.	.
Chr3	13051428	13052985	AT3TE53460	.	-	HELITRONY3	Helitron	RC	1557	short	1399	high	536772	pericentromeric	2419	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	13052985	13053031	AT3TE53465	.	-	HELITRONY1E	Helitron	RC	46	tiny	447	high	536726	pericentromeric	3976	no-CHH	no-CHH	.	.	.	.	.
Chr3	13053031	13053140	AT3TE53470	.	+	HELITRONY2	Helitron	RC	109	short	198	medium	536617	pericentromeric	4022	no-CHH	no-CHH	.	.	.	.	.
Chr3	13054070	13054425	AT3TE53475	.	-	ATLINE1_5	L1	LINE	355	short	91	medium	535332	pericentromeric	5061	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	13054425	13054481	AT3TE53480	.	-	TA11	L1	LINE	56	tiny	157	medium	535276	pericentromeric	5416	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13054481	13056249	AT3TE53485	.	-	TA11	L1	LINE	1768	short	157	medium	533508	pericentromeric	4798	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	13056249	13057088	AT3TE53490	.	-	ATLINE1_5	L1	LINE	839	short	91	medium	532669	pericentromeric	3959	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	13057088	13057225	AT3TE53495	.	-	TA11	L1	LINE	137	short	157	medium	532532	pericentromeric	3822	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	13062804	13062912	AT3TE53510	.	+	ATGP9B	Gypsy	LTR	108	short	27	low	526845	pericentromeric	94	no-CHH	no-CHH	.	.	.	.	.
Chr3	13063268	13063312	AT3TE53515	.	-	ATREP15	Helitron	RC	44	tiny	1003	high	526445	pericentromeric	558	no-CHH	no-CHH	.	.	.	.	.
Chr3	13063313	13063368	AT3TE53520	.	+	ATREP1	Helitron	RC	56	tiny	498	high	526389	pericentromeric	602	.	.	.	.	.	.	.
Chr3	13063368	13063457	AT3TE53525	.	+	BRODYAGA1A	MuDR	DNA	89	tiny	586	high	526300	pericentromeric	658	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	13063457	13064373	AT3TE53530	.	+	HELITRONY1E	Helitron	RC	916	short	447	high	525384	pericentromeric	747	no-CHH	no-CHH	.	.	.	.	.
Chr3	13064373	13064460	AT3TE53535	.	-	ATREP11	Helitron	RC	87	tiny	841	high	525297	pericentromeric	1663	no-CHH	no-CHH	.	.	.	.	.
Chr3	13064460	13064537	AT3TE53540	.	-	TNAT1A	.	DNA	77	tiny	162	medium	525220	pericentromeric	1750	no-CHH	no-CHH	.	.	.	.	.
Chr3	13064545	13064669	AT3TE53545	.	+	HELITRONY1C	Helitron	RC	124	short	120	medium	525088	pericentromeric	1835	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	13066845	13067380	AT3TE53550	.	+	ATREP10D	Helitron	RC	535	short	1295	high	522377	pericentromeric	245	no-CHH	no-CHH	.	.	.	.	.
Chr3	13067380	13068112	AT3TE53555	.	-	ATLINE1A	L1	LINE	732	short	289	high	521645	pericentromeric	0	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13069956	13070017	AT3TE53560	.	-	HELITRONY3	Helitron	RC	61	tiny	1399	high	519740	pericentromeric	3	no-CHH	no-CHH	.	.	.	.	.
Chr3	13070017	13070075	AT3TE53565	.	+	HELITRONY1A	Helitron	RC	58	tiny	271	high	519682	pericentromeric	64	no-CHH	no-CHH	.	.	.	.	.
Chr3	13070075	13071382	AT3TE53570	.	+	HELITRONY1B	Helitron	RC	1307	short	414	high	518375	pericentromeric	122	no-RdDM	no-CHH	.	.	.	.	.
Chr3	13071382	13071812	AT3TE53575	.	-	HELITRONY1A	Helitron	RC	430	short	271	high	517945	pericentromeric	1429	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr3	13072110	13078855	AT3TE53580	.	+	VANDAL21	MuDR	DNA	6745	long	64	medium	510902	pericentromeric	100	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	13075608	13076428	+	transcript_id-"e5523e7c-3f34-4bca-add8-8342489a43ce|124"
Chr3	13081915	13083303	AT3TE53590	.	+	ATGP3	Gypsy	LTR	1388	short	60	medium	506454	pericentromeric	1994	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	13083777	13083990	AT3TE53595	.	-	ATHILA4	Gypsy	LTR	213	short	250	high	505767	pericentromeric	3856	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	13083996	13087358	AT3TE53600	.	+	ATHILA4C	Gypsy	LTR	3362	medium	206	high	502399	pericentromeric	4075	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	13087358	13092843	AT3TE53605	.	-	ATLANTYS2	Gypsy	LTR	5485	long	179	medium	496914	pericentromeric	4127	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	13090818	13090861	AT3TE53610	.	-	ATLANTYS2	Gypsy	LTR	43	tiny	179	medium	498896	pericentromeric	6109	no-CHH	no-CHH	.	.	.	.	.
Chr3	13092843	13096961	AT3TE53615	.	+	ATHILA4C	Gypsy	LTR	4118	medium	206	high	492796	pericentromeric	9	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	13094641	13095530	AT3TE53620	.	+	HELITRON4	Helitron	RC	889	short	199	medium	494227	pericentromeric	1440	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	13097960	13104012	AT3TE53630	.	+	ATLINE1_1	L1	LINE	6052	long	61	medium	485745	pericentromeric	656	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	13104636	13104657	AT3TE53635	.	+	ATCOPIA35	Copia	LTR	21	tiny	22	low	485100	pericentromeric	7332	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr3	13104657	13108697	AT3TE53640	.	+	ATCOPIA40	Copia	LTR	4040	medium	6	low	481060	pericentromeric	7353	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	13108697	13108916	AT3TE53645	.	+	ATHILA4A	Gypsy	LTR	219	short	310	high	480841	pericentromeric	11393	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13109310	13109350	AT3TE53650	.	+	ATLINE2	L1	LINE	40	tiny	138	medium	480407	pericentromeric	12006	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	13109350	13113854	AT3TE53655	.	+	ATLINE2	L1	LINE	4504	medium	138	medium	475903	pericentromeric	10611	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	13110188	13111144	AT3TE53660	.	+	ATLINEIII	L1	LINE	956	short	196	medium	478613	pericentromeric	12884	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	13111144	13112158	AT3TE53665	.	+	ATHILA4C	Gypsy	LTR	1014	short	206	high	477599	pericentromeric	12307	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13113854	13114002	AT3TE53670	.	+	ATHILA4D_LTR	Gypsy	LTR	148	short	106	medium	475755	pericentromeric	10463	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	13114002	13114046	AT3TE53675	.	+	ATHILA	Gypsy	LTR	44	tiny	198	medium	475711	pericentromeric	10419	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13114046	13115561	AT3TE53680	.	+	ATHILA	Gypsy	LTR	1515	short	198	medium	474196	pericentromeric	8904	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	13115561	13116259	AT3TE53685	.	+	ATHILA	Gypsy	LTR	698	short	198	medium	473498	pericentromeric	8206	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	13116259	13124322	AT3TE53690	.	+	ATHILA	Gypsy	LTR	8063	long	198	medium	465435	pericentromeric	143	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	13124322	13124581	AT3TE53695	.	+	ATHILA4D_LTR	Gypsy	LTR	259	short	106	medium	465176	pericentromeric	0	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	13124629	13124711	AT3TE53700	.	+	ATHILA4A	Gypsy	LTR	82	tiny	310	high	465046	pericentromeric	0	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	13124996	13125622	AT3TE53705	.	+	ATGP8	Gypsy	LTR	626	short	92	medium	464135	pericentromeric	0	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	13127134	13127553	AT3TE53710	.	-	HELITRONY3	Helitron	RC	419	short	1399	high	462204	pericentromeric	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	13128092	13128286	AT3TE53715	.	-	ARNOLD4	MuDR	DNA	194	short	23	low	461471	pericentromeric	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	13128290	13129191	AT3TE53720	.	-	ARNOLDY2	MuDR	DNA	901	short	288	high	460566	pericentromeric	125	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13129191	13129225	AT3TE53725	.	+	ARNOLDY1	MuDR	DNA	34	tiny	237	high	460532	pericentromeric	1026	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	13129225	13129278	AT3TE53730	.	-	HELITRONY3	Helitron	RC	53	tiny	1399	high	460479	pericentromeric	1060	no-CHH	no-CHH	.	.	.	.	.
Chr3	13133220	13133274	AT3TE53740	.	+	VANDAL21	MuDR	DNA	54	tiny	64	medium	456483	pericentromeric	5055	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	13133274	13139033	AT3TE53745	.	+	VANDAL21	MuDR	DNA	5759	long	64	medium	450724	pericentromeric	4593	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	13137209,13137211,13137317	13137975,13137861,13137825	+,+,+	transcript_id-"e713415a-93aa-4b19-b870-b64851e78215|7",transcript_id-"f49d6770-7f93-4984-8001-fa42b71a3acc|20",transcript_id-"4ac9520a-474d-4595-a0fa-a7af134d58e6|5"
Chr3	13137457	13137508	AT3TE53750	.	+	VANDAL21	MuDR	DNA	51	tiny	64	medium	452249	pericentromeric	6118	RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	13139053	13143529	AT3TE53755	.	-	ATHILA4A	Gypsy	LTR	4476	medium	310	high	446228	pericentromeric	97	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	13146956	13150628	AT3TE53765	.	-	ATLANTYS1	Gypsy	LTR	3672	medium	153	medium	439129	pericentromeric	1003	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	13148570	13148824	AT3TE53770	.	-	ATLANTYS2	Gypsy	LTR	254	short	179	medium	440933	pericentromeric	2617	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	13150628	13150651	AT3TE53775	.	-	ATLANTYS1	Gypsy	LTR	23	tiny	153	medium	439106	pericentromeric	4675	no-RdDM	no-CHH	.	.	.	.	.
Chr3	13150651	13150822	AT3TE53780	.	-	ATLANTYS1	Gypsy	LTR	171	short	153	medium	438935	pericentromeric	4698	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	13151378	13151990	AT3TE53785	.	-	TAT1_ATH	Gypsy	LTR	612	short	87	medium	437767	pericentromeric	5425	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	13152776	13152872	AT3TE53790	.	-	ATREP4	Helitron	RC	96	tiny	832	high	436885	pericentromeric	6823	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	13152872	13153038	AT3TE53795	.	-	ATREP3	Helitron	RC	166	short	1439	high	436719	pericentromeric	6919	no-RdDM	no-CHH	.	.	.	.	.
Chr3	13153038	13154548	AT3TE53800	.	-	ATREP10D	Helitron	RC	1510	short	1295	high	435209	pericentromeric	7085	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	13154553	13154972	AT3TE53805	.	-	ATREP3	Helitron	RC	419	short	1439	high	434785	pericentromeric	7440	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13154993	13155138	AT3TE53810	.	+	ATSINE4	.	SINE	145	short	98	medium	434619	pericentromeric	7274	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13155245	13155267	AT3TE53815	.	+	HELITRONY1B	Helitron	RC	22	tiny	414	high	434490	pericentromeric	7145	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13155267	13156093	AT3TE53820	.	+	ATMUN1	MuDR	DNA	826	short	107	medium	433664	pericentromeric	6319	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	13156093	13156224	AT3TE53825	.	-	ATREP5	Helitron	RC	131	short	624	high	433533	pericentromeric	6188	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13156385	13156634	AT3TE53830	.	-	ATLINE1A	L1	LINE	249	short	289	high	433123	pericentromeric	5778	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13158664	13161516	AT3TE53835	.	+	ATLANTYS1	Gypsy	LTR	2852	medium	153	medium	428241	pericentromeric	896	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	13164458	13165705	AT3TE53845	.	+	ATGP5	Gypsy	LTR	1247	short	86	medium	424052	pericentromeric	0	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	13165705	13169990	AT3TE53850	.	+	ATGP7	Gypsy	LTR	4285	medium	47	low	419767	pericentromeric	1090	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	13168259,13168259,13168259,13168259,13168259,13168259,13168740,13169914	13169194,13170658,13170660,13170662,13170662,13170662,13169235,13169608	+,+,+,+,+,+,+,-	transcript_id-"3434385f-eef4-4602-965c-d751a48c8720|51",transcript_id-"67bb7bc5-ee80-4caf-a0be-7b6bdf81b704|52",transcript_id-"1292733f-8e2d-4108-8c87-2e9c2007e0e8|17",transcript_id-"12d4941c-14fe-426c-a966-9b46c3a400d3|730",transcript_id-"6fadbb43-eac2-489b-aae2-8d350e17730c|28",transcript_id-"a23a36b7-6617-46bb-84ff-44a4a99bc375|44",transcript_id-"0d4c0fc6-2801-4511-af06-4ddf8d1fe51f|3",transcript_id-"0a2f8c1f-c076-4d53-a70b-f6a7dc2c9ee2|3"
Chr3	13166583	13166662	AT3TE53855	.	+	ATGP5	Gypsy	LTR	79	tiny	86	medium	423095	pericentromeric	2026	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	13168134	13169292	AT3TE53860	.	+	ATGP1	Gypsy	LTR	1158	short	144	medium	420465	pericentromeric	1788	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	13168259,13168259,13168259,13168259,13168259,13168259,13168740	13169194,13170658,13170660,13170662,13170662,13170662,13169235	+,+,+,+,+,+,+	transcript_id-"3434385f-eef4-4602-965c-d751a48c8720|51",transcript_id-"67bb7bc5-ee80-4caf-a0be-7b6bdf81b704|52",transcript_id-"1292733f-8e2d-4108-8c87-2e9c2007e0e8|17",transcript_id-"12d4941c-14fe-426c-a966-9b46c3a400d3|730",transcript_id-"6fadbb43-eac2-489b-aae2-8d350e17730c|28",transcript_id-"a23a36b7-6617-46bb-84ff-44a4a99bc375|44",transcript_id-"0d4c0fc6-2801-4511-af06-4ddf8d1fe51f|3"
Chr3	13169990	13170667	AT3TE53865	.	+	ATGP5	Gypsy	LTR	677	short	86	medium	419090	pericentromeric	413	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	13168259,13168259,13168259,13168259,13168259,13169748	13170658,13170660,13170662,13170662,13170662,13170702	+,+,+,+,+,+	transcript_id-"67bb7bc5-ee80-4caf-a0be-7b6bdf81b704|52",transcript_id-"1292733f-8e2d-4108-8c87-2e9c2007e0e8|17",transcript_id-"12d4941c-14fe-426c-a966-9b46c3a400d3|730",transcript_id-"6fadbb43-eac2-489b-aae2-8d350e17730c|28",transcript_id-"a23a36b7-6617-46bb-84ff-44a4a99bc375|44",transcript_id-"8c3c50a8-f390-4423-9845-36a026551928|3"
Chr3	13170667	13170920	AT3TE53870	.	+	ATGP5	Gypsy	LTR	253	short	86	medium	418837	pericentromeric	160	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	13172787	13172874	AT3TE53875	.	+	TAT1_ATH	Gypsy	LTR	87	tiny	87	medium	416883	pericentromeric	1260	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	13173336	13173404	AT3TE53880	.	-	ATLINE1A	L1	LINE	68	tiny	289	high	416353	pericentromeric	1809	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	13173404	13175934	AT3TE53885	.	-	ATLINE1A	L1	LINE	2530	medium	289	high	413823	pericentromeric	1877	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	13175934	13177179	AT3TE53890	.	-	ATLINE1_4	L1	LINE	1245	short	102	medium	412578	pericentromeric	4407	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	13176702	13176886	AT3TE53895	.	+	ATMU2	MuDR	DNA	184	short	64	medium	412871	pericentromeric	5175	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	13177775	13177853	AT3TE53900	.	+	ATSINE4	.	SINE	78	tiny	98	medium	411904	pericentromeric	6248	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13178023	13178047	AT3TE53905	.	-	HELITRONY3	Helitron	RC	24	tiny	1399	high	411710	pericentromeric	6496	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13178049	13178871	AT3TE53910	.	+	ATMUN1	MuDR	DNA	822	short	107	medium	410886	pericentromeric	6522	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13178873	13179201	AT3TE53915	.	+	ATREP4	Helitron	RC	328	short	832	high	410556	pericentromeric	7346	no-CHH	no-RdDM	.	.	.	.	.
Chr3	13179815	13179893	AT3TE53920	.	+	ATSINE4	.	SINE	78	tiny	98	medium	409864	pericentromeric	8288	RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13180060	13180089	AT3TE53925	.	-	ATREP4	Helitron	RC	29	tiny	832	high	409668	pericentromeric	8533	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13180089	13180213	AT3TE53930	.	+	ATMUN1	MuDR	DNA	124	short	107	medium	409544	pericentromeric	8562	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13180213	13182556	AT3TE53935	.	+	HELITRONY3	Helitron	RC	2343	medium	1399	high	407201	pericentromeric	8686	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13180523	13180912	AT3TE53940	.	+	ATMUN1	MuDR	DNA	389	short	107	medium	408845	pericentromeric	8996	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	13181851	13181928	AT3TE53945	.	+	ATSINE4	.	SINE	78	tiny	98	medium	407829	pericentromeric	10323	.	.	.	.	.	.	.
Chr3	13182125	13183308	AT3TE53950	.	-	ATREP3	Helitron	RC	1183	short	1439	high	406449	pericentromeric	10598	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13182556	13182945	AT3TE53955	.	+	ATMUN1	MuDR	DNA	389	short	107	medium	406812	pericentromeric	11029	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	13183885	13183962	AT3TE53960	.	+	ATSINE4	.	SINE	78	tiny	98	medium	405795	pericentromeric	12357	.	.	LowExpressed	.	.	.	.
Chr3	13184681	13186249	AT3TE53965	.	-	ATGP1	Gypsy	LTR	1568	short	144	medium	403508	pericentromeric	13154	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	13186249	13194551	AT3TE53970	.	-	ATHILA	Gypsy	LTR	8302	long	198	medium	395206	pericentromeric	14722	no-RdDM	no-RdDM	ExpressedAndAnnotated	13189167,13188663,13189166,13189167,13189167	13187022,13188432,13188432,13188525,13188666	-,-,-,-,-	transcript_id-"bcd14591-2383-497b-b84c-a65391d73d80|7",transcript_id-"dc63846f-9e2c-4d3c-9e5c-586541d67624|5",transcript_id-"ebae1ede-00f7-4c93-8985-2fd3b992fd47|3",transcript_id-"cfd0ae0f-d8d2-4422-9547-427b117d2086|12",transcript_id-"d2a7b4bb-d041-4dd7-94e6-4c04826ae1d7|10"
Chr3	13194551	13196981	AT3TE53975	.	-	ATGP1	Gypsy	LTR	2430	medium	144	medium	392776	pericentromeric	22186	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	13197532	13197758	AT3TE53980	.	+	ATHILA7A	Gypsy	LTR	226	short	31	low	391999	pericentromeric	21409	PolIV-and-RDR6-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	13198081	13205284	AT3TE53985	.	+	ATENSPM2	En-Spm	DNA	7203	long	114	medium	384473	pericentromeric	13883	no-RdDM	no-RdDM	ExpressedAndAnnotated	13198572,13198572,13198574,13198574,13202117,13203253	13202451,13202458,13198883,13202461,13202418,13205550	+,+,+,+,+,+	transcript_id-"fd429166-9c4b-4efa-9457-e8a78c706122|3",transcript_id-"7de835da-be6f-4805-9a6e-a2096eb5900f|5",transcript_id-"e11ed7ef-4108-416a-a929-d2c6c788a841|10",transcript_id-"a56ae4e0-48e9-4887-9e1d-9eb0e3d8f799|3",transcript_id-"78d59e4f-fc21-4b8c-908b-e632ff8c7ac1|3",transcript_id-"9b9c0083-2769-403b-884c-f71998290427|3"
Chr3	13205284	13205325	AT3TE53990	.	+	ATENSPM2	En-Spm	DNA	41	tiny	114	medium	384432	pericentromeric	13842	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	13205325	13209008	AT3TE53995	.	+	ATENSPM2	En-Spm	DNA	3683	medium	114	medium	380749	pericentromeric	10159	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	13203253,13205346,13207140,13207850,13207853,13207875,13208087,13208087,13208087,13208087,13208118	13205550,13205588,13209002,13209019,13208668,13208564,13208580,13208693,13209016,13209074,13208473	+,+,+,+,+,+,+,+,+,+,+	transcript_id-"9b9c0083-2769-403b-884c-f71998290427|3",transcript_id-"822666d5-4a4f-4ab7-9061-042d6b3f8d17|7",transcript_id-"6a3c1707-0b4b-47a5-b0da-ceed9a353385|4",transcript_id-"f426e44a-9917-4d4e-bed6-7bf58c1a97f5|10",transcript_id-"03635134-0b36-40f7-8318-cdca53aa9b60|3",transcript_id-"d4fcb600-51c9-4233-9249-36e396eb1b06|3",transcript_id-"2829ec69-5aed-40df-a449-2e8d1f913003|6",transcript_id-"526dde14-5611-41e6-aa4d-b1503f548e94|8",transcript_id-"1a29afab-85dc-4313-9f60-aed3305e46de|13",transcript_id-"c39cc5c7-040e-4f0e-b223-624eca3e4989|6",transcript_id-"5c7b217f-9d70-4a45-a497-05264d7c04b6|7"
Chr3	13209021	13209287	AT3TE54000	.	+	ATENSPM4	En-Spm	DNA	266	short	50	medium	380470	pericentromeric	9880	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	13209158	13212324	+	transcript_id-"38644869-9666-4442-a928-7d241736f1f4|29"
Chr3	13209956	13212639	AT3TE54005	.	+	ATENSPM1A	En-Spm	DNA	2683	medium	77	medium	377118	pericentromeric	6528	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	13209158	13212324	+	transcript_id-"38644869-9666-4442-a928-7d241736f1f4|29"
Chr3	13211373	13211394	AT3TE54010	.	+	ATENSPM1A	En-Spm	DNA	21	tiny	77	medium	378363	pericentromeric	7773	no-RdDM	no-CHH	.	.	.	.	.
Chr3	13212639	13212745	AT3TE54015	.	+	ATENSPM1A	En-Spm	DNA	106	short	77	medium	377012	pericentromeric	6422	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	13212745	13212850	AT3TE54020	.	+	ATENSPM4	En-Spm	DNA	105	short	50	medium	376907	pericentromeric	6317	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	13212851	13213690	AT3TE54025	.	+	ATENSPM2	En-Spm	DNA	839	short	114	medium	376067	pericentromeric	5477	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	13213690	13213898	AT3TE54030	.	+	ATHILA7A	Gypsy	LTR	208	short	31	low	375859	pericentromeric	5269	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	13214161	13214200	AT3TE54035	.	+	ATHILA0_I	Gypsy	LTR	39	tiny	138	medium	375557	pericentromeric	4967	no-RdDM	no-CHH	.	.	.	.	.
Chr3	13214200	13215350	AT3TE54040	.	+	ATHILA8B	Gypsy	LTR	1150	short	78	medium	374407	pericentromeric	3817	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	13215874	13216316	AT3TE54045	.	+	ATHILA5	Gypsy	LTR	442	short	131	medium	373441	pericentromeric	2851	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	13221505	13221534	AT3TE54060	.	+	HELITRONY2	Helitron	RC	29	tiny	198	medium	368223	pericentromeric	49	no-CHH	no-CHH	.	.	.	.	.
Chr3	13221534	13223013	AT3TE54065	.	+	HELITRONY2	Helitron	RC	1479	short	198	medium	366744	pericentromeric	78	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	13223013	13223451	AT3TE54070	.	-	BRODYAGA1A	MuDR	DNA	438	short	586	high	366306	pericentromeric	1557	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	13226250	13226327	AT3TE54080	.	+	ATSINE4	.	SINE	77	tiny	98	medium	363430	pericentromeric	4794	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	13226498	13226524	AT3TE54085	.	+	HELITRONY1E	Helitron	RC	26	tiny	447	high	363233	pericentromeric	5042	RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13226524	13227322	AT3TE54090	.	+	ATMUN1	MuDR	DNA	798	short	107	medium	362435	pericentromeric	5068	no-CHH	no-CHH	.	.	.	.	.
Chr3	13227322	13228362	AT3TE54095	.	-	ATREP3	Helitron	RC	1040	short	1439	high	361395	pericentromeric	5469	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	13228546	13228622	AT3TE54100	.	-	ATREP15	Helitron	RC	76	tiny	1003	high	361135	pericentromeric	5209	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	13228622	13230279	AT3TE54105	.	+	HELITRONY1B	Helitron	RC	1657	short	414	high	359478	pericentromeric	3552	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr3	13228984	13229350	AT3TE54110	.	+	ATMUN1	MuDR	DNA	366	short	107	medium	360407	pericentromeric	4481	no-CHH	no-CHH	.	.	.	.	.
Chr3	13229350	13229836	AT3TE54115	.	-	ATREP19	.	DNA	486	short	189	medium	359921	pericentromeric	3995	no-CHH	no-CHH	.	.	.	.	.
Chr3	13230287	13230432	AT3TE54120	.	+	ATSINE4	.	SINE	145	short	98	medium	359325	pericentromeric	3399	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13230520	13230561	AT3TE54125	.	+	HELITRONY1B	Helitron	RC	41	tiny	414	high	359196	pericentromeric	3270	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13230561	13231374	AT3TE54130	.	+	ATMUN1	MuDR	DNA	813	short	107	medium	358383	pericentromeric	2457	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	13231376	13231480	AT3TE54135	.	+	BRODYAGA2	MuDR	DNA	104	short	525	high	358277	pericentromeric	2351	no-RdDM	no-CHH	.	.	.	.	.
Chr3	13231522	13232771	AT3TE54140	.	-	VANDAL5	MuDR	DNA	1249	short	85	medium	356986	pericentromeric	1060	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	13235114	13235877	AT3TE54145	.	-	BRODYAGA2	MuDR	DNA	763	short	525	high	353880	pericentromeric	0	no-RdDM	no-CHH	.	.	.	.	.
Chr3	13236150	13236379	AT3TE54150	.	-	ATREP10B	Helitron	RC	229	short	491	high	353378	pericentromeric	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	13236379	13237436	AT3TE54155	.	+	HELITRONY2	Helitron	RC	1057	short	198	medium	352321	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	13237436	13238165	AT3TE54160	.	+	ATREP11	Helitron	RC	729	short	841	high	351592	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	13238868	13238990	AT3TE54165	.	-	ATREP11	Helitron	RC	122	short	841	high	350767	pericentromeric	0	no-RdDM	no-CHH	.	.	.	.	.
Chr3	13238991	13239354	AT3TE54170	.	+	ATREP5	Helitron	RC	363	short	624	high	350403	pericentromeric	0	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	13239354	13239436	AT3TE54175	.	+	ATREP1	Helitron	RC	82	tiny	498	high	350321	pericentromeric	0	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	13240355	13252197	AT3TE54180	.	+	ATLANTYS2	Gypsy	LTR	11842	long	179	medium	337560	pericentromeric	201	no-RdDM	no-RdDM	ExpressedAndAnnotated	13251954	13252475	+	transcript_id-"75a0e808-13fd-4164-8cb7-f6d8c9bf94c5|3"
Chr3	13243334	13245774	AT3TE54185	.	+	ATDNAI26T9	MuDR	DNA	2440	medium	25	low	343983	pericentromeric	3180	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	13253600	13255143	AT3TE54210	.	-	ATCOPIA49	Copia	LTR	1543	short	34	low	334614	pericentromeric	13446	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	13255594	13255631	AT3TE54215	.	-	ATCOPIA31A	Copia	LTR	37	tiny	5	low	334126	pericentromeric	15440	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	13255631	13256072	AT3TE54220	.	-	ATCOPIA31A	Copia	LTR	441	short	5	low	333685	pericentromeric	15477	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	13256925	13257125	AT3TE54225	.	+	ATREP3	Helitron	RC	200	short	1439	high	332632	pericentromeric	16771	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	13257125	13257199	AT3TE54230	.	+	ATREP3	Helitron	RC	74	tiny	1439	high	332558	pericentromeric	16971	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	13257199	13259108	AT3TE54235	.	-	ATREP5	Helitron	RC	1909	short	624	high	330649	pericentromeric	16973	no-CHH	no-CHH	.	.	.	.	.
Chr3	13259108	13259364	AT3TE54240	.	+	ATREP10D	Helitron	RC	256	short	1295	high	330393	pericentromeric	16717	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	13259364	13262144	AT3TE54245	.	+	ARNOLDY2	MuDR	DNA	2780	medium	288	high	327613	pericentromeric	13937	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	13262145	13262318	AT3TE54250	.	-	HELITRONY3	Helitron	RC	174	short	1399	high	327439	pericentromeric	13763	.	.	.	.	.	.	.
Chr3	13262319	13262626	AT3TE54255	.	+	HELITRON2	Helitron	RC	308	short	194	medium	327131	pericentromeric	13455	.	.	.	.	.	.	.
Chr3	13262626	13262793	AT3TE54260	.	+	ATREP3	Helitron	RC	167	short	1439	high	326964	pericentromeric	13288	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	13264113	13264942	AT3TE54265	.	-	ATREP11	Helitron	RC	829	short	841	high	324815	pericentromeric	11139	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13265697	13267123	AT3TE54270	.	+	ATREP10D	Helitron	RC	1426	short	1295	high	322634	pericentromeric	8958	no-RdDM	no-CHH	.	.	.	.	.
Chr3	13268514	13270988	AT3TE54275	.	-	ATREP10D	Helitron	RC	2474	medium	1295	high	318769	pericentromeric	5093	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	13269690	13270576	AT3TE54280	.	+	ATREP10D	Helitron	RC	886	short	1295	high	319181	pericentromeric	5505	no-CHH	no-CHH	.	.	.	.	.
Chr3	13270988	13271118	AT3TE54285	.	-	ATREP10B	Helitron	RC	130	short	491	high	318639	pericentromeric	4963	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	13271296	13271358	AT3TE54290	.	-	HELITRON2	Helitron	RC	62	tiny	194	medium	318399	pericentromeric	4723	no-CHH	no-CHH	.	.	.	.	.
Chr3	13271358	13275312	AT3TE54295	.	-	HELITRON2	Helitron	RC	3954	medium	194	medium	314445	pericentromeric	769	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	13275419	13275941	AT3TE54300	.	-	ATREP10B	Helitron	RC	522	short	491	high	313816	pericentromeric	140	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	13278841	13279492	AT3TE54310	.	-	ATCOPIA44	Copia	LTR	651	short	12	low	310265	pericentromeric	1686	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	13280051	13280603	AT3TE54315	.	-	ATCOPIA31A	Copia	LTR	552	short	5	low	309154	pericentromeric	2896	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	13281656	13282224	AT3TE54320	.	-	ATREP10B	Helitron	RC	568	short	491	high	307533	pericentromeric	4501	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	13282224	13282292	AT3TE54325	.	+	ATREP9	Helitron	RC	68	tiny	201	high	307465	pericentromeric	5069	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	13282292	13287570	AT3TE54330	.	-	ATLINE1_6	L1	LINE	5278	long	129	medium	302187	pericentromeric	5137	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	13287541	13288220	+	transcript_id-"b34171b7-f895-4fc6-a3aa-a244c6189279|4"
Chr3	13288177	13288623	AT3TE54335	.	+	ATREP10B	Helitron	RC	446	short	491	high	301134	pericentromeric	11022	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	13289819	13290446	AT3TE54340	.	+	ATREP10D	Helitron	RC	627	short	1295	high	299311	pericentromeric	12664	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	13291263	13292059	AT3TE54345	.	+	HELITRONY2	Helitron	RC	796	short	198	medium	297698	pericentromeric	14108	no-RdDM	no-CHH	.	.	.	.	.
Chr3	13292059	13292160	AT3TE54350	.	-	BRODYAGA2	MuDR	DNA	101	short	525	high	297597	pericentromeric	14904	no-CHH	no-CHH	.	.	.	.	.
Chr3	13292160	13292556	AT3TE54355	.	+	ATREP10C	Helitron	RC	396	short	123	medium	297201	pericentromeric	15005	no-CHH	no-CHH	.	.	.	.	.
Chr3	13294309	13294973	AT3TE54360	.	-	ATREP11	Helitron	RC	664	short	841	high	294784	pericentromeric	17154	no-RdDM	no-CHH	.	.	.	.	.
Chr3	13294973	13295006	AT3TE54365	.	-	ATREP11	Helitron	RC	33	tiny	841	high	294751	pericentromeric	17818	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	13295262	13295316	AT3TE54370	.	-	ATREP5	Helitron	RC	54	tiny	624	high	294441	pericentromeric	18107	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	13295316	13295475	AT3TE54375	.	+	ATREP10A	Helitron	RC	159	short	279	high	294282	pericentromeric	18161	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13295475	13297124	AT3TE54380	.	+	ATREP10A	Helitron	RC	1649	short	279	high	292633	pericentromeric	18320	no-RdDM	no-CHH	.	.	.	.	.
Chr3	13297143	13303704	AT3TE54385	.	-	HELITRON2	Helitron	RC	6561	long	194	medium	286053	pericentromeric	19988	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	13303704	13303787	AT3TE54390	.	-	HELITRON2	Helitron	RC	83	tiny	194	medium	285970	pericentromeric	26549	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13303787	13303809	AT3TE54395	.	+	HELITRONY2	Helitron	RC	22	tiny	198	medium	285948	pericentromeric	26632	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	13303809	13304373	AT3TE54400	.	-	ATREP10D	Helitron	RC	564	short	1295	high	285384	pericentromeric	26654	no-RdDM	no-CHH	.	.	.	.	.
Chr3	13305199	13305424	AT3TE54405	.	+	ATHATN8	HAT	DNA	225	short	15	low	284333	pericentromeric	28044	no-RdDM	no-CHH	.	.	.	.	.
Chr3	13306767	13306788	AT3TE54410	.	-	HELITRONY2	Helitron	RC	21	tiny	198	medium	282969	pericentromeric	29612	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13306797	13307115	AT3TE54415	.	-	HELITRON2	Helitron	RC	319	short	194	medium	282642	pericentromeric	29641	.	.	.	.	.	.	.
Chr3	13307306	13307549	AT3TE54420	.	+	HELITRONY3	Helitron	RC	243	short	1399	high	282208	pericentromeric	30151	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13307549	13308224	AT3TE54425	.	+	ATREP9	Helitron	RC	675	short	201	high	281533	pericentromeric	30394	no-CHH	no-CHH	.	.	.	.	.
Chr3	13308540	13308814	AT3TE54430	.	-	ATREP15	Helitron	RC	274	short	1003	high	280943	pericentromeric	31385	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr3	13308814	13310876	AT3TE54435	.	+	ATREP10D	Helitron	RC	2062	medium	1295	high	278881	pericentromeric	31659	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13314007	13314103	AT3TE54445	.	-	HELITRON2	Helitron	RC	96	tiny	194	medium	275654	pericentromeric	36852	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13315655	13316317	AT3TE54450	.	-	ATLANTYS3	Gypsy	LTR	662	short	142	medium	273440	pericentromeric	38500	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	13318009	13323211	AT3TE54455	.	-	ATGP3	Gypsy	LTR	5202	long	60	medium	266546	pericentromeric	33783	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	13326539	13326632	AT3TE54465	.	+	ATREP3	Helitron	RC	93	tiny	1439	high	263125	pericentromeric	30362	no-CHH	no-CHH	.	.	.	.	.
Chr3	13326632	13326837	AT3TE54470	.	+	ATREP3	Helitron	RC	205	short	1439	high	262920	pericentromeric	30157	no-CHH	no-CHH	.	.	.	.	.
Chr3	13326837	13326933	AT3TE54475	.	+	ATREP3	Helitron	RC	96	tiny	1439	high	262824	pericentromeric	30061	no-CHH	no-CHH	.	.	.	.	.
Chr3	13326933	13329125	AT3TE54480	.	+	ATREP3	Helitron	RC	2192	medium	1439	high	260632	pericentromeric	27869	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	13329125	13330081	AT3TE54485	.	-	HELITRONY1A	Helitron	RC	956	short	271	high	259676	pericentromeric	26913	no-CHH	no-CHH	.	.	.	.	.
Chr3	13331648	13332638	AT3TE54490	.	-	META1	Copia	LTR	990	short	138	medium	257119	pericentromeric	24356	no-CHH	no-CHH	.	.	.	.	.
Chr3	13333205	13333283	AT3TE54495	.	-	HELITRONY3	Helitron	RC	78	tiny	1399	high	256474	pericentromeric	23711	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	13333283	13343593	AT3TE54500	.	-	ARNOLD3	MuDR	DNA	10310	long	45	low	246164	pericentromeric	13401	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	13333449,13333449,13339172,13343520	13335898,13338471,13341549,13343746	+,+,+,+	transcript_id-"0a0c2ce6-a874-4377-82eb-57a6da5bcdf8|20",transcript_id-"486e83cd-1c51-4553-b1f1-65c263323f4f|6",transcript_id-"36538d65-f3b8-4f9f-8c2f-0d13bf0e8db5|9",transcript_id-"ade9454c-c2a9-48bf-99ab-80b74181295c|3"
Chr3	13343594	13343626	AT3TE54505	.	-	ARNOLD3	MuDR	DNA	32	tiny	45	low	246131	pericentromeric	13368	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	13343734	13356464	AT3TE54510	.	-	VANDAL2	MuDR	DNA	12730	long	43	low	233293	pericentromeric	530	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	13360151	13360302	AT3TE54520	.	-	ATCOPIA43	Copia	LTR	151	short	29	low	229455	pericentromeric	0	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	13360417	13360773	AT3TE54525	.	-	ATCOPIA41	Copia	LTR	356	short	39	low	228984	pericentromeric	0	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	13360932	13360974	AT3TE54530	.	-	ATCOPIA43	Copia	LTR	42	tiny	29	low	228783	pericentromeric	360	no-RdDM	no-CHH	.	.	.	.	.
Chr3	13361551	13367972	AT3TE54535	.	-	ATCOPIA43	Copia	LTR	6421	long	29	low	221785	pericentromeric	462	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	13364556	13365970	AT3TE54540	.	-	ATCOPIA43	Copia	LTR	1414	short	29	low	223787	pericentromeric	2464	no-RdDM	no-CHH	.	.	.	.	.
Chr3	13369173	13374108	AT3TE54550	.	+	ATCOPIA78	Copia	LTR	4935	medium	24	low	215649	pericentromeric	40	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	13376071	13376148	AT3TE54555	.	+	ATSINE4	.	SINE	77	tiny	98	medium	213609	pericentromeric	6938	no-RdDM	no-CHH	.	.	.	.	.
Chr3	13376314	13376417	AT3TE54560	.	-	ATREP4	Helitron	RC	103	short	832	high	213340	pericentromeric	7181	no-RdDM	no-CHH	.	.	.	.	.
Chr3	13376417	13376999	AT3TE54565	.	-	ATREP11	Helitron	RC	582	short	841	high	212758	pericentromeric	7284	no-RdDM	no-CHH	.	.	.	.	.
Chr3	13377114	13378563	AT3TE54570	.	+	ATREP10D	Helitron	RC	1449	short	1295	high	211194	pericentromeric	7981	no-CHH	no-CHH	.	.	.	.	.
Chr3	13378563	13384299	AT3TE54575	.	-	ATMU9	MuDR	DNA	5736	long	16	low	205458	pericentromeric	9430	no-RdDM	no-RdDM	ExpressedAndAnnotated	13384058	13383611	-	transcript_id-"b877777c-8c0a-4337-8e5f-babdbaa3e366|6"
Chr3	13378733	13380490	AT3TE54580	.	-	ATHILA2	Gypsy	LTR	1757	short	413	high	209267	pericentromeric	9600	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	13384299	13384324	AT3TE54590	.	-	ATLINE1_5	L1	LINE	25	tiny	91	medium	205433	pericentromeric	15166	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13384324	13384690	AT3TE54595	.	-	ATLINE1_5	L1	LINE	366	short	91	medium	205067	pericentromeric	15191	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	13387801	13390903	AT3TE54605	.	+	VANDAL5	MuDR	DNA	3102	medium	85	medium	198854	pericentromeric	18668	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	13388058	13388139	AT3TE54610	.	+	VANDAL4	MuDR	DNA	81	tiny	102	medium	201618	pericentromeric	18925	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	13388139	13388223	AT3TE54615	.	-	VANDAL4	MuDR	DNA	84	tiny	102	medium	201534	pericentromeric	19006	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	13390903	13390929	AT3TE54625	.	-	ATDNAI26T9	MuDR	DNA	26	tiny	25	low	198828	pericentromeric	21770	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	13390929	13391523	AT3TE54630	.	+	BRODYAGA1A	MuDR	DNA	594	short	586	high	198234	pericentromeric	21796	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	13391627	13391804	AT3TE54635	.	-	BRODYAGA1A	MuDR	DNA	177	short	586	high	197953	pericentromeric	22494	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13391809	13392365	AT3TE54640	.	+	VANDAL3	MuDR	DNA	556	short	177	medium	197392	pericentromeric	22676	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	13392365	13392476	AT3TE54645	.	-	VANDAL3	MuDR	DNA	111	short	177	medium	197281	pericentromeric	23232	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	13392476	13393593	AT3TE54650	.	+	VANDAL3	MuDR	DNA	1117	short	177	medium	196164	pericentromeric	23343	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	13393626	13393749	AT3TE54655	.	-	Unassigned	.	Unassigned	123	short	.	low	196008	pericentromeric	24493	no-RdDM	no-CHH	.	.	.	.	.
Chr3	13394476	13395067	AT3TE54660	.	-	ATGP10	Gypsy	LTR	591	short	165	medium	194690	pericentromeric	25343	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	13396650	13396833	AT3TE54665	.	+	VANDAL5	MuDR	DNA	183	short	85	medium	192924	pericentromeric	27203	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	13397090	13399654	AT3TE54670	.	+	VANDAL4	MuDR	DNA	2564	medium	102	medium	190103	pericentromeric	24382	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	13397645	13398863	AT3TE54675	.	+	ATHILA4B_LTR	Gypsy	LTR	1218	short	143	medium	190894	pericentromeric	25173	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	13399654	13399698	AT3TE54680	.	+	VANDAL4	MuDR	DNA	44	tiny	102	medium	190059	pericentromeric	24338	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	13399698	13399825	AT3TE54685	.	+	ATENSPM3	En-Spm	DNA	127	short	98	medium	189932	pericentromeric	24211	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	13399895	13403142	AT3TE54690	.	-	ATENSPM5	En-Spm	DNA	3247	medium	111	medium	186615	pericentromeric	20894	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	13403142	13405030	AT3TE54695	.	-	ATHILA2	Gypsy	LTR	1888	short	413	high	184727	pericentromeric	19006	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	13403171	13404934	AT3TE54700	.	-	ATHILA2	Gypsy	LTR	1763	short	413	high	184823	pericentromeric	19102	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	13405032	13412098	AT3TE54705	.	-	ATHILA6A	Gypsy	LTR	7066	long	247	high	177659	pericentromeric	11938	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	13407272	13406823	-	transcript_id-"b8541311-5481-4ace-9e45-3bfddc15a79e|3"
Chr3	13412098	13421909	AT3TE54710	.	-	ATHILA0_I	Gypsy	LTR	9811	long	138	medium	167848	pericentromeric	2127	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	13413384	13412807	-	transcript_id-"78b74094-b061-4ab9-89c7-8246b76b47e5|3"
Chr3	13421917	13423042	AT3TE54715	.	+	ATHILA4A	Gypsy	LTR	1125	short	310	high	166715	pericentromeric	994	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	13423042	13423091	AT3TE54720	.	+	ATHILA4C	Gypsy	LTR	49	tiny	206	high	166666	pericentromeric	945	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	13423096	13423248	AT3TE54725	.	-	VANDAL11	MuDR	DNA	152	short	18	low	166509	pericentromeric	788	no-RdDM	no-CHH	.	.	.	.	.
Chr3	13423436	13423939	AT3TE54730	.	-	ATGP10	Gypsy	LTR	503	short	165	medium	165818	pericentromeric	97	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	13425672	13439669	AT3TE54735	.	-	ATHILA2	Gypsy	LTR	13997	long	413	high	150088	pericentromeric	0	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	13426216	13428215	AT3TE54740	.	-	ATHILA2	Gypsy	LTR	1999	short	413	high	161542	pericentromeric	383	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	13426797	13428003	AT3TE54745	.	-	ATHILA4B_LTR	Gypsy	LTR	1206	short	143	medium	161754	pericentromeric	964	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	13428314	13428657	AT3TE54750	.	-	ATHILA2	Gypsy	LTR	343	short	413	high	161100	pericentromeric	2481	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	13428657	13429764	AT3TE54755	.	-	ATHILA2	Gypsy	LTR	1107	short	413	high	159993	pericentromeric	2824	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	13429765	13436083	AT3TE54760	.	+	ATGP5	Gypsy	LTR	6318	long	86	medium	153674	pericentromeric	3932	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	13436083	13436149	AT3TE54765	.	+	ATGP5	Gypsy	LTR	66	tiny	86	medium	153608	pericentromeric	10250	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	13438369	13438436	AT3TE54770	.	-	ATHILA2	Gypsy	LTR	67	tiny	413	high	151321	pericentromeric	12536	no-CHH	no-CHH	.	.	.	.	.
Chr3	13439669	13440045	AT3TE54775	.	-	ATHILA6A	Gypsy	LTR	376	short	247	high	149712	pericentromeric	11392	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	13440045	13449244	AT3TE54780	.	-	ATLANTYS1	Gypsy	LTR	9199	long	153	medium	140513	pericentromeric	2193	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	13440644,13440905,13440978,13440979,13440979	13441745,13441715,13441677,13441878,13442257	+,+,+,+,+	transcript_id-"9de2cb15-5544-45b6-ac91-68fdf2eb78f1|6",transcript_id-"6a5077f7-ec82-485d-9e8f-bc2eaa258e62|7",transcript_id-"3ed2ae62-aa30-4f47-a64a-40b96f5dded5|6",transcript_id-"b950ac9a-ace9-4570-aa72-20cb7b5651a2|17",transcript_id-"1486070f-65b3-438b-aec0-9faa1be28b44|3"
Chr3	13449244	13449282	AT3TE54785	.	+	ATREP5	Helitron	RC	38	tiny	624	high	140475	pericentromeric	2155	no-CHH	no-CHH	.	.	.	.	.
Chr3	13449282	13449691	AT3TE54790	.	+	BRODYAGA1A	MuDR	DNA	409	short	586	high	140066	pericentromeric	1746	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	13449691	13449745	AT3TE54795	.	+	BRODYAGA1	MuDR	DNA	54	tiny	251	high	140012	pericentromeric	1692	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13449861	13450173	AT3TE54800	.	-	HARBINGER	Harbinger	DNA	312	short	90	medium	139584	pericentromeric	1264	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	13452823	13453829	AT3TE54810	.	+	ATREP11	Helitron	RC	1006	short	841	high	135928	pericentromeric	16	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	13453829	13465570	AT3TE54815	.	-	ARNOLD3	MuDR	DNA	11741	long	45	low	124187	pericentromeric	1022	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	13453990,13454008	13454680,13455339	+,+	transcript_id-"6d51c560-3ff9-4e13-a0d2-5f644148482a|25",transcript_id-"19e06998-689f-4db3-b3d1-4b634e17b449|6"
Chr3	13465584	13467668	AT3TE54820	.	-	ARNOLD2	MuDR	DNA	2084	medium	68	medium	122089	pericentromeric	12777	no-RdDM	no-RdDM	ExpressedAndAnnotated	13474881	13467072	-	transcript_id-"71ed09f5-b2d7-439a-94b9-72ad279664c4|3"
Chr3	13468440	13468561	AT3TE54825	.	-	TA11	L1	LINE	121	short	157	medium	121196	pericentromeric	15633	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	13473410	13473503	AT3TE54840	.	-	ATLINE1_6	L1	LINE	93	tiny	129	medium	116254	pericentromeric	11895	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	13473740	13475007	AT3TE54845	.	-	ARNOLD2	MuDR	DNA	1267	short	68	medium	114750	pericentromeric	10391	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	13474881,13474891,13474881	13467072,13474405,13474441	-,-,-	transcript_id-"71ed09f5-b2d7-439a-94b9-72ad279664c4|3",transcript_id-"ae425d65-ff2d-4ccc-930c-2a0f7fd10145|7",transcript_id-"fefa58b8-20fe-4515-8ece-468da6fe728d|29"
Chr3	13475036	13475474	AT3TE54850	.	+	ARNOLDY1	MuDR	DNA	438	short	237	high	114283	pericentromeric	9924	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13475491	13476524	AT3TE54855	.	+	ARNOLDY2	MuDR	DNA	1033	short	288	high	113233	pericentromeric	8874	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	13476524	13476640	AT3TE54860	.	+	ATGP2N	Gypsy	LTR	116	short	54	medium	113117	pericentromeric	8758	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	13476640	13480691	AT3TE54865	.	-	ATGP1	Gypsy	LTR	4051	medium	144	medium	109066	pericentromeric	4707	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	13480866	13480909	AT3TE54870	.	+	ATREP3	Helitron	RC	43	tiny	1439	high	108848	pericentromeric	4489	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13480909	13481135	AT3TE54875	.	-	HELITRONY1B	Helitron	RC	226	short	414	high	108622	pericentromeric	4263	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	13481135	13482236	AT3TE54880	.	-	HELITRONY2	Helitron	RC	1101	short	198	medium	107521	pericentromeric	3162	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	13482237	13482484	AT3TE54885	.	-	ATREP10B	Helitron	RC	248	short	491	high	107273	pericentromeric	2914	.	.	.	.	.	.	.
Chr3	13482908	13483057	AT3TE54890	.	+	HELITRONY3	Helitron	RC	149	short	1399	high	106700	pericentromeric	2341	no-CHH	no-CHH	.	.	.	.	.
Chr3	13483057	13484487	AT3TE54895	.	+	ATREP11	Helitron	RC	1430	short	841	high	105270	pericentromeric	911	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	13484487	13484631	AT3TE54900	.	+	ATREP15	Helitron	RC	144	short	1003	high	105126	pericentromeric	767	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	13486881	13488591	AT3TE54905	.	-	ATLINEIII	L1	LINE	1710	short	196	medium	101166	pericentromeric	168	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	13489287	13489480	AT3TE54910	.	-	HELITRON4	Helitron	RC	193	short	199	medium	100277	pericentromeric	114	no-CHH	no-CHH	.	.	.	.	.
Chr3	13493863	13494001	AT3TE54920	.	+	BRODYAGA1	MuDR	DNA	139	short	251	high	95756	pericentromeric	232	.	.	.	.	.	.	.
Chr3	13494001	13494023	AT3TE54925	.	-	ATMU10	MuDR	DNA	22	tiny	87	medium	95734	pericentromeric	371	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	13494028	13494197	AT3TE54930	.	-	ATHATN1	HAT	DNA	169	short	69	medium	95560	pericentromeric	398	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	13494580	13495374	AT3TE54935	.	-	ATENSPM3	En-Spm	DNA	794	short	98	medium	94383	pericentromeric	950	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	13495374	13495857	AT3TE54940	.	-	ATENSPM7	En-Spm	DNA	483	short	74	medium	93900	pericentromeric	1744	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	13495858	13495878	AT3TE54945	.	-	ATENSPM3	En-Spm	DNA	21	tiny	98	medium	93879	pericentromeric	2227	.	.	.	.	.	.	.
Chr3	13495943	13498413	AT3TE54950	.	-	ATENSPM3	En-Spm	DNA	2470	medium	98	medium	91344	pericentromeric	1263	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	13497316	13497409	AT3TE54955	.	-	ATENSPM3	En-Spm	DNA	93	tiny	98	medium	92348	pericentromeric	2267	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	13498413	13498754	AT3TE54960	.	-	ATENSPM3	En-Spm	DNA	341	short	98	medium	91003	pericentromeric	922	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	13498471	13498514	AT3TE54965	.	-	ATENSPM3	En-Spm	DNA	43	tiny	98	medium	91243	pericentromeric	1162	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	13500850	13500993	AT3TE54970	.	+	ATENSPM3	En-Spm	DNA	143	short	98	medium	88764	pericentromeric	435	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	13501957	13501977	AT3TE54975	.	+	ATENSPM3	En-Spm	DNA	20	tiny	98	medium	87780	pericentromeric	1542	no-RdDM	no-CHH	.	.	.	.	.
Chr3	13501977	13502057	AT3TE54980	.	+	ATENSPM3	En-Spm	DNA	80	tiny	98	medium	87700	pericentromeric	1562	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	13502057	13506974	AT3TE54985	.	+	ATENSPM7	En-Spm	DNA	4917	medium	74	medium	82783	pericentromeric	1642	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	13507095	13507657	AT3TE54990	.	+	HELITRON4	Helitron	RC	562	short	199	medium	82100	pericentromeric	6680	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	13508135	13508703	AT3TE54995	.	+	ATREP10B	Helitron	RC	568	short	491	high	81054	pericentromeric	7720	no-CHH	no-CHH	.	.	.	.	.
Chr3	13508919	13509172	AT3TE55000	.	-	ATDNA2T9C	MuDR	DNA	253	short	242	high	80585	pericentromeric	8504	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	13510316	13512924	AT3TE55005	.	-	VANDAL3	MuDR	DNA	2608	medium	177	medium	76833	pericentromeric	9901	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	13512924	13515359	AT3TE55010	.	-	VANDAL3	MuDR	DNA	2435	medium	177	medium	74398	pericentromeric	11044	no-RdDM	no-RdDM	ExpressedAndAnnotated	13513169	13513570	+	transcript_id-"f9b619de-cbed-4179-b1b7-464a30788cf9|3"
Chr3	13515398	13515556	AT3TE55015	.	-	VANDAL3	MuDR	DNA	158	short	177	medium	74201	pericentromeric	10847	no-RdDM	no-CHH	.	.	.	.	.
Chr3	13515566	13515866	AT3TE55020	.	+	ATHILA2	Gypsy	LTR	300	short	413	high	73891	pericentromeric	10537	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	13515866	13520088	AT3TE55025	.	-	ATHILA2	Gypsy	LTR	4222	medium	413	high	69669	pericentromeric	6315	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	13517159	13516893	-	transcript_id-"a5506e03-60e2-449e-b162-a38ed0e0dfe7|3"
Chr3	13520088	13520489	AT3TE55030	.	-	ATHILA6A	Gypsy	LTR	401	short	247	high	69268	pericentromeric	5914	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	13520489	13524136	AT3TE55035	.	-	ATHILA6B	Gypsy	LTR	3647	medium	134	medium	65621	pericentromeric	2267	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	13524136	13524650	AT3TE55040	.	+	ATHILA4D_LTR	Gypsy	LTR	514	short	106	medium	65107	pericentromeric	1753	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	13525511	13525531	AT3TE55045	.	+	RathE3_cons	.	RathE3_cons	20	tiny	104	medium	64226	pericentromeric	872	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	13525531	13525655	AT3TE55050	.	+	RathE3_cons	.	RathE3_cons	124	short	104	medium	64102	pericentromeric	748	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	13525656	13526203	AT3TE55055	.	+	ATREP19	.	DNA	548	short	189	medium	63554	pericentromeric	200	.	.	.	.	.	.	.
Chr3	13527977	13529344	AT3TE55060	.	+	ATREP15	Helitron	RC	1367	short	1003	high	60413	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	13529344	13529383	AT3TE55065	.	-	HELITRONY1B	Helitron	RC	39	tiny	414	high	60374	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	13529943	13530053	AT3TE55070	.	-	ATREP11	Helitron	RC	110	short	841	high	59704	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	13530053	13531351	AT3TE55075	.	+	ATREP10D	Helitron	RC	1298	short	1295	high	58406	pericentromeric	104	no-CHH	no-CHH	.	.	.	.	.
Chr3	13531351	13531429	AT3TE55080	.	+	HELITRONY3	Helitron	RC	78	tiny	1399	high	58328	pericentromeric	1402	no-CHH	no-CHH	.	.	.	.	.
Chr3	13532757	13532819	AT3TE55085	.	-	ATDNA12T3_2	.	DNA	62	tiny	660	high	56938	pericentromeric	2808	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13533011	13533051	AT3TE55090	.	-	ATHILA4C	Gypsy	LTR	40	tiny	206	high	56706	pericentromeric	3062	RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	13533051	13534165	AT3TE55095	.	-	ATHILA4C	Gypsy	LTR	1114	short	206	high	55592	pericentromeric	3102	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	13534389	13534552	AT3TE55100	.	-	ATGP8	Gypsy	LTR	163	short	92	medium	55205	pericentromeric	4440	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	13541507	13542313	AT3TE55130	.	-	ATHILA4	Gypsy	LTR	806	short	250	high	47444	pericentromeric	11558	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	13543976	13544041	AT3TE55135	.	+	VANDAL2N1	MuDR	DNA	65	tiny	51	medium	45716	pericentromeric	14027	no-CHH	no-CHH	.	.	.	.	.
Chr3	13544041	13546419	AT3TE55140	.	+	VANDAL2	MuDR	DNA	2378	medium	43	low	43338	pericentromeric	14092	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	13546421	13549012	AT3TE55145	.	+	ATHILA4C	Gypsy	LTR	2591	medium	206	high	40745	pericentromeric	16472	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	13549013	13549325	AT3TE55150	.	+	ATHILA	Gypsy	LTR	312	short	198	medium	40432	pericentromeric	19064	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	13549335	13557094	AT3TE55155	.	+	ATHILA6B	Gypsy	LTR	7759	long	134	medium	32663	pericentromeric	19386	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	13555996	13557429	+	transcript_id-"d6982be4-edd9-407f-a2fe-95e44d18cf13|10"
Chr3	13557094	13561769	AT3TE55160	.	+	VANDAL2	MuDR	DNA	4675	medium	43	low	27988	pericentromeric	27145	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	13560064,13560064	13559183,13559280	-,-	transcript_id-"1b1d1ed2-92d5-4392-aa97-694b00351018|10",transcript_id-"0990ee92-8b62-4bc5-bba1-10d67652df79|12"
Chr3	13563206	13563277	AT3TE55165	.	-	ATCOPIA49	Copia	LTR	71	tiny	34	low	26480	pericentromeric	33257	no-RdDM	no-CHH	.	.	.	.	.
Chr3	13563277	13563318	AT3TE55170	.	-	ATCOPIA56	Copia	LTR	41	tiny	16	low	26439	pericentromeric	33328	no-CHH	no-CHH	.	.	.	.	.
Chr3	13563318	13564344	AT3TE55175	.	-	ATCOPIA65	Copia	LTR	1026	short	34	low	25413	pericentromeric	33369	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13564344	13565843	AT3TE55180	.	-	ATCOPIA95	Copia	LTR	1499	short	72	medium	23914	pericentromeric	34395	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	13566796	13567571	AT3TE55185	.	+	HELITRONY3	Helitron	RC	775	short	1399	high	22186	pericentromeric	36847	no-CHH	no-CHH	.	.	.	.	.
Chr3	13567571	13567769	AT3TE55190	.	+	ATREP15	Helitron	RC	198	short	1003	high	21988	pericentromeric	37622	no-CHH	no-CHH	.	.	.	.	.
Chr3	13568407	13571835	AT3TE55195	.	+	VANDAL2	MuDR	DNA	3428	medium	43	low	17922	pericentromeric	38458	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	13573670	13574210	AT3TE55200	.	-	BRODYAGA1A	MuDR	DNA	540	short	586	high	15547	pericentromeric	43721	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	13574210	13575397	AT3TE55205	.	+	ATCOPIA16	Copia	LTR	1187	short	12	low	14360	pericentromeric	44261	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	13574724	13574746	AT3TE55210	.	+	ATCOPIA16	Copia	LTR	22	tiny	12	low	15011	pericentromeric	44775	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	13576100	13576122	AT3TE55215	.	-	ATENSPM7	En-Spm	DNA	22	tiny	74	medium	13635	pericentromeric	46151	no-CHH	no-RdDM	.	.	.	.	.
Chr3	13576122	13576624	AT3TE55220	.	-	ATENSPM3	En-Spm	DNA	502	short	98	medium	13133	pericentromeric	46173	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	13576624	13576672	AT3TE55225	.	-	ATENSPM7	En-Spm	DNA	48	tiny	74	medium	13085	pericentromeric	46675	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	13576672	13580704	AT3TE55230	.	-	ATENSPM7	En-Spm	DNA	4032	medium	74	medium	9053	pericentromeric	46723	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	13579594	13580299	AT3TE55235	.	-	ATENSPM3	En-Spm	DNA	705	short	98	medium	9458	pericentromeric	49645	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	13580741	13585518	AT3TE55240	.	+	ATHILA6A	Gypsy	LTR	4777	medium	247	high	4239	pericentromeric	50792	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	13583553	13584134	AT3TE55245	.	+	ATHILA	Gypsy	LTR	581	short	198	medium	5623	pericentromeric	53604	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	13585600	13585653	AT3TE55250	.	+	ATHILA6A	Gypsy	LTR	53	tiny	247	high	4104	pericentromeric	55651	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	13585653	13586905	AT3TE55255	.	+	ATHILA6A	Gypsy	LTR	1252	short	247	high	2852	pericentromeric	55704	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	13585302,13585321	13585975,13585906	+,+	transcript_id-"39d8d603-1524-47f1-8f97-3376c8d4be17|5",transcript_id-"4a048ca5-1bf9-45d7-98a9-e0ad3ae6d400|4"
Chr3	13592614	13592662	AT3TE55270	.	-	ATDNA12T3_2	.	DNA	48	tiny	660	high	0	pericentromeric	62665	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	13593107	13593663	AT3TE55275	.	-	ATDNA12T3_2	.	DNA	556	short	660	high	0	pericentromeric	63158	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	13594110	13594685	AT3TE55280	.	-	ATDNA12T3_2	.	DNA	575	short	660	high	0	pericentromeric	64161	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	13595131	13595195	AT3TE55285	.	-	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	65182	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	13595624	13596196	AT3TE55290	.	-	ATDNA12T3_2	.	DNA	572	short	660	high	0	pericentromeric	65675	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	13596620	13597210	AT3TE55295	.	-	ATDNA12T3_2	.	DNA	590	short	660	high	0	pericentromeric	66671	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13597641	13597705	AT3TE55300	.	-	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	67692	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13598151	13598216	AT3TE55305	.	-	ATDNA12T3_2	.	DNA	65	tiny	660	high	0	pericentromeric	68202	RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr3	13598663	13598742	AT3TE55310	.	-	ATDNA12T3_2	.	DNA	79	tiny	660	high	0	pericentromeric	68714	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	13599173	13599252	AT3TE55315	.	-	ATDNA12T3_2	.	DNA	79	tiny	660	high	0	pericentromeric	69224	no-CHH	no-RdDM	.	.	.	.	.
Chr3	13599684	13599762	AT3TE55320	.	-	ATDNA12T3_2	.	DNA	79	tiny	660	high	0	pericentromeric	69734	.	.	.	.	.	.	.
Chr3	13600193	13600257	AT3TE55325	.	-	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	70244	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	13600529	13602817	AT3TE55330	.	+	ATHILA2	Gypsy	LTR	2288	medium	413	high	0	pericentromeric	70580	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	13602817	13603228	AT3TE55335	.	+	ATHILA6A	Gypsy	LTR	411	short	247	high	0	pericentromeric	72868	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13603228	13609413	AT3TE55340	.	+	ATHILA2	Gypsy	LTR	6185	long	413	high	0	pericentromeric	73279	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	13606342	13608424	+	transcript_id-"d9ecdcf7-d699-4ebd-b109-5c8edc5f9226|5"
Chr3	13609415	13611757	AT3TE55345	.	+	ATGP3	Gypsy	LTR	2342	medium	60	medium	0	pericentromeric	79466	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	13612181	13612204	AT3TE55350	.	-	ATHILA2	Gypsy	LTR	23	tiny	413	high	0	pericentromeric	82232	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	13612204	13619467	AT3TE55355	.	-	ATHILA2	Gypsy	LTR	7263	long	413	high	0	pericentromeric	82255	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	13619467	13628948	AT3TE55360	.	-	ATHILA6B	Gypsy	LTR	9481	long	134	medium	0	pericentromeric	89518	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	13623991,13623450	13621856,13623201	-,-	transcript_id-"60978e1a-908a-4c01-b076-1cbf8e8f8a8e|3",transcript_id-"6894fdcd-5bd0-46e3-89fa-0acdc9b9f1b5|3"
Chr3	13628948	13632998	AT3TE55365	.	-	ATHILA6A	Gypsy	LTR	4050	medium	247	high	0	pericentromeric	98999	no-RdDM	no-RdDM	ExpressedAndAnnotated	13629620	13629434	-	transcript_id-"2197316e-61bb-400a-8d42-a6d45aff888b|4"
Chr3	13633258	13634513	AT3TE55370	.	-	ATHILA2	Gypsy	LTR	1255	short	413	high	0	pericentromeric	103309	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	13634513	13640748	AT3TE55375	.	-	ATHILA2	Gypsy	LTR	6235	long	413	high	0	pericentromeric	104564	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	13639875	13639956	AT3TE55380	.	-	ATHILA2	Gypsy	LTR	81	tiny	413	high	0	pericentromeric	109926	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	13639956	13640314	AT3TE55385	.	-	ATHILA2	Gypsy	LTR	358	short	413	high	0	pericentromeric	110007	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	13643230	13654839	AT3TE55395	.	+	ATHILA6A	Gypsy	LTR	11609	long	247	high	0	pericentromeric	113281	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	13651626	13653803	+	transcript_id-"60491acb-22b8-4db8-bf23-92b6f193e5fb|5"
Chr3	13657385	13657682	AT3TE55405	.	-	ATCOPIA65	Copia	LTR	297	short	34	low	0	pericentromeric	127436	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	13657684	13659434	AT3TE55410	.	-	ATHILA2	Gypsy	LTR	1750	short	413	high	0	pericentromeric	127735	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	13659435	13660050	AT3TE55415	.	+	ATHILA6A	Gypsy	LTR	615	short	247	high	0	pericentromeric	129486	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13660210	13660302	AT3TE55420	.	+	ATHILA	Gypsy	LTR	92	tiny	198	medium	0	pericentromeric	130261	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	13660302	13663792	AT3TE55425	.	+	ATHILA6A	Gypsy	LTR	3490	medium	247	high	0	pericentromeric	130353	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	13663792	13668345	AT3TE55430	.	-	ATCOPIA65	Copia	LTR	4553	medium	34	low	0	pericentromeric	133843	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	13671115	13673564	AT3TE55440	.	-	ATHILA6A	Gypsy	LTR	2449	medium	247	high	0	pericentromeric	141166	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	13673564	13673586	AT3TE55445	.	-	ATHILA2	Gypsy	LTR	22	tiny	413	high	0	pericentromeric	143615	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	13673586	13673618	AT3TE55450	.	-	ATHILA	Gypsy	LTR	32	tiny	198	medium	0	pericentromeric	143637	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	13673840	13673910	AT3TE55455	.	-	ATDNA12T3_2	.	DNA	70	tiny	660	high	0	pericentromeric	143891	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	13674151	13674752	AT3TE55460	.	-	ATHILA6B	Gypsy	LTR	601	short	134	medium	0	pericentromeric	144202	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	13677169	13677225	AT3TE55470	.	+	ATGP7	Gypsy	LTR	56	tiny	47	low	0	pericentromeric	147220	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	13677225	13680115	AT3TE55475	.	+	ATGP3	Gypsy	LTR	2890	medium	60	medium	0	pericentromeric	147276	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	13680457	13681807	AT3TE55480	.	-	ATHILA6B	Gypsy	LTR	1350	short	134	medium	0	pericentromeric	150508	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13681900	13682476	AT3TE55485	.	-	ATDNA12T3_2	.	DNA	576	short	660	high	0	pericentromeric	151951	RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr3	13682910	13682980	AT3TE55490	.	-	ATDNA12T3_2	.	DNA	70	tiny	660	high	0	pericentromeric	152961	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13683408	13683478	AT3TE55495	.	-	ATDNA12T3_2	.	DNA	71	tiny	660	high	0	pericentromeric	153458	.	.	LowExpressed	.	.	.	.
Chr3	13683899	13683966	AT3TE55500	.	-	ATDNA12T3_2	.	DNA	67	tiny	660	high	0	pericentromeric	153950	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	13684457	13684526	AT3TE55505	.	-	ATDNA12T3_2	.	DNA	70	tiny	660	high	0	pericentromeric	154507	.	.	.	.	.	.	.
Chr3	13684954	13685024	AT3TE55510	.	-	ATDNA12T3_2	.	DNA	71	tiny	660	high	0	pericentromeric	155004	.	.	.	.	.	.	.
Chr3	13685467	13685534	AT3TE55515	.	-	ATDNA12T3_2	.	DNA	67	tiny	660	high	0	pericentromeric	155518	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13685822	13685892	AT3TE55520	.	+	ATDNA12T3_2	.	DNA	71	tiny	660	high	0	pericentromeric	155872	.	.	.	.	.	.	.
Chr3	13686308	13686371	AT3TE55525	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	156358	.	.	.	.	.	.	.
Chr3	13686814	13686884	AT3TE55530	.	+	ATDNA12T3_2	.	DNA	71	tiny	660	high	0	pericentromeric	156864	.	.	.	.	.	.	.
Chr3	13687300	13687363	AT3TE55535	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	157350	.	.	.	.	.	.	.
Chr3	13687844	13687907	AT3TE55540	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	157894	.	.	.	.	.	.	.
Chr3	13688350	13688420	AT3TE55545	.	+	ATDNA12T3_2	.	DNA	71	tiny	660	high	0	pericentromeric	158400	.	.	.	.	.	.	.
Chr3	13688856	13688926	AT3TE55550	.	+	ATDNA12T3_2	.	DNA	71	tiny	660	high	0	pericentromeric	158906	.	.	.	.	.	.	.
Chr3	13689342	13689405	AT3TE55555	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	159392	.	.	.	.	.	.	.
Chr3	13689847	13689918	AT3TE55560	.	+	ATDNA12T3_2	.	DNA	71	tiny	660	high	0	pericentromeric	159898	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13690334	13690397	AT3TE55565	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	160384	.	.	.	.	.	.	.
Chr3	13690840	13690910	AT3TE55570	.	+	ATDNA12T3_2	.	DNA	71	tiny	660	high	0	pericentromeric	160890	.	.	.	.	.	.	.
Chr3	13691326	13691390	AT3TE55575	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	161377	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	13691814	13691877	AT3TE55580	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	161864	.	.	.	.	.	.	.
Chr3	13692321	13692391	AT3TE55585	.	+	ATDNA12T3_2	.	DNA	71	tiny	660	high	0	pericentromeric	162371	.	.	.	.	.	.	.
Chr3	13692807	13692870	AT3TE55590	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	162857	.	.	.	.	.	.	.
Chr3	13693117	13693181	AT3TE55595	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	163168	no-RdDM	no-CHH	.	.	.	.	.
Chr3	13693623	13693693	AT3TE55600	.	+	ATDNA12T3_2	.	DNA	71	tiny	660	high	0	pericentromeric	163673	.	.	.	.	.	.	.
Chr3	13694109	13694172	AT3TE55605	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	164159	.	.	.	.	.	.	.
Chr3	13694615	13694685	AT3TE55610	.	+	ATDNA12T3_2	.	DNA	71	tiny	660	high	0	pericentromeric	164665	.	.	.	.	.	.	.
Chr3	13695101	13695164	AT3TE55615	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	165151	.	.	.	.	.	.	.
Chr3	13695608	13695678	AT3TE55620	.	+	ATDNA12T3_2	.	DNA	71	tiny	660	high	0	pericentromeric	165658	.	.	.	.	.	.	.
Chr3	13696114	13696184	AT3TE55625	.	+	ATDNA12T3_2	.	DNA	71	tiny	660	high	0	pericentromeric	166164	.	.	.	.	.	.	.
Chr3	13696600	13696663	AT3TE55630	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	166650	.	.	.	.	.	.	.
Chr3	13697185	13697254	AT3TE55635	.	+	ATDNA12T3_2	.	DNA	70	tiny	660	high	0	pericentromeric	167235	.	.	.	.	.	.	.
Chr3	13697697	13697760	AT3TE55640	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	167747	.	.	.	.	.	.	.
Chr3	13698210	13698273	AT3TE55645	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	168260	.	.	LowExpressed	.	.	.	.
Chr3	13698709	13698778	AT3TE55650	.	+	ATDNA12T3_2	.	DNA	70	tiny	660	high	0	pericentromeric	168759	.	.	.	.	.	.	.
Chr3	13699220	13699284	AT3TE55655	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	169271	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	13699732	13699796	AT3TE55660	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	169783	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13700237	13700300	AT3TE55665	.	+	ATDNA12T3_2	.	DNA	63	tiny	660	high	0	pericentromeric	170288	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13700743	13700807	AT3TE55670	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	170794	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	13701251	13701321	AT3TE55675	.	+	ATDNA12T3_2	.	DNA	71	tiny	660	high	0	pericentromeric	171301	.	.	.	.	.	.	.
Chr3	13701631	13701694	AT3TE55680	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	171681	.	.	.	.	.	.	.
Chr3	13702137	13702200	AT3TE55685	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	172187	.	.	.	.	.	.	.
Chr3	13702643	13702714	AT3TE55690	.	+	ATDNA12T3_2	.	DNA	72	tiny	660	high	0	pericentromeric	172693	.	.	LowExpressed	.	.	.	.
Chr3	13703145	13703208	AT3TE55695	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	173195	.	.	.	.	.	.	.
Chr3	13703650	13703711	AT3TE55700	.	+	ATDNA12T3_2	.	DNA	62	tiny	660	high	0	pericentromeric	173700	.	.	.	.	.	.	.
Chr3	13704153	13704216	AT3TE55705	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	174203	.	.	.	.	.	.	.
Chr3	13704658	13704721	AT3TE55710	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	174708	.	.	.	.	.	.	.
Chr3	13704935	13704998	AT3TE55715	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	174985	.	.	.	.	.	.	.
Chr3	13705443	13705506	AT3TE55720	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	175493	.	.	.	.	.	.	.
Chr3	13705948	13706012	AT3TE55725	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	175999	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	13706452	13706528	AT3TE55730	.	+	ATDNA12T3_2	.	DNA	77	tiny	660	high	0	pericentromeric	176502	.	.	LowExpressed	.	.	.	.
Chr3	13706957	13707027	AT3TE55735	.	+	ATDNA12T3_2	.	DNA	71	tiny	660	high	0	pericentromeric	177007	.	.	.	.	.	.	.
Chr3	13707461	13707525	AT3TE55740	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	177512	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	13707966	13708029	AT3TE55745	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	178016	.	.	LowExpressed	.	.	.	.
Chr3	13708474	13708537	AT3TE55750	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	178524	.	.	LowExpressed	.	.	.	.
Chr3	13708980	13709043	AT3TE55755	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	179030	.	.	LowExpressed	.	.	.	.
Chr3	13709484	13709547	AT3TE55760	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	179534	.	.	LowExpressed	.	.	.	.
Chr3	13709987	13710063	AT3TE55765	.	+	ATDNA12T3_2	.	DNA	77	tiny	660	high	0	pericentromeric	180037	.	.	LowExpressed	.	.	.	.
Chr3	13710491	13710561	AT3TE55770	.	+	ATDNA12T3_2	.	DNA	71	tiny	660	high	0	pericentromeric	180541	.	.	.	.	.	.	.
Chr3	13710993	13711047	AT3TE55775	.	+	ATDNA12T3_2	.	DNA	54	tiny	660	high	0	pericentromeric	181044	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	13711497	13711559	AT3TE55780	.	+	ATDNA12T3_2	.	DNA	62	tiny	660	high	0	pericentromeric	181548	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13712002	13712066	AT3TE55785	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	182053	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13712508	13712572	AT3TE55790	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	182559	no-CHH	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	13713010	13713074	AT3TE55795	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	183061	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13713515	13713579	AT3TE55800	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	183566	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	13714020	13714092	AT3TE55805	.	+	ATDNA12T3_2	.	DNA	72	tiny	660	high	0	pericentromeric	184071	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	13714526	13714597	AT3TE55810	.	+	ATDNA12T3_2	.	DNA	71	tiny	660	high	0	pericentromeric	184577	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	13715039	13715101	AT3TE55815	.	+	ATDNA12T3_2	.	DNA	62	tiny	660	high	0	pericentromeric	185090	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	13715544	13715608	AT3TE55820	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	185595	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13716050	13716122	AT3TE55825	.	+	ATDNA12T3_2	.	DNA	72	tiny	660	high	0	pericentromeric	186101	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	13716553	13716616	AT3TE55830	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	186603	.	.	.	.	.	.	.
Chr3	13717059	13717122	AT3TE55835	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	187109	.	.	.	.	.	.	.
Chr3	13717565	13717628	AT3TE55840	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	187615	.	.	.	.	.	.	.
Chr3	13718067	13718130	AT3TE55845	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	188117	.	.	LowExpressed	.	.	.	.
Chr3	13718554	13718617	AT3TE55850	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	188604	.	.	LowExpressed	.	.	.	.
Chr3	13719060	13719123	AT3TE55855	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	189110	.	.	.	.	.	.	.
Chr3	13719566	13719629	AT3TE55860	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	189616	.	.	.	.	.	.	.
Chr3	13720068	13720131	AT3TE55865	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	190118	.	.	.	.	.	.	.
Chr3	13720574	13720637	AT3TE55870	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	190624	.	.	LowExpressed	.	.	.	.
Chr3	13721077	13721141	AT3TE55875	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	191128	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13721589	13721651	AT3TE55880	.	+	ATDNA12T3_2	.	DNA	62	tiny	660	high	0	pericentromeric	191640	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	13722094	13722157	AT3TE55885	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	192144	.	.	.	.	.	.	.
Chr3	13722598	13722670	AT3TE55890	.	+	ATDNA12T3_2	.	DNA	72	tiny	660	high	0	pericentromeric	192649	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13723104	13723168	AT3TE55895	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	193155	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13723617	13723679	AT3TE55900	.	+	ATDNA12T3_2	.	DNA	62	tiny	660	high	0	pericentromeric	193668	no-RdDM	no-CHH	.	.	.	.	.
Chr3	13724122	13724186	AT3TE55905	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	194173	no-CHH	no-RdDM	.	.	.	.	.
Chr3	13724628	13724692	AT3TE55910	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	194679	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13725364	13725427	AT3TE55915	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	195414	.	.	.	.	.	.	.
Chr3	13725869	13725932	AT3TE55920	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	195919	.	.	.	.	.	.	.
Chr3	13726367	13726437	AT3TE55925	.	+	ATDNA12T3_2	.	DNA	71	tiny	660	high	0	pericentromeric	196417	.	.	.	.	.	.	.
Chr3	13726853	13726916	AT3TE55930	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	196903	.	.	.	.	.	.	.
Chr3	13727359	13727429	AT3TE55935	.	+	ATDNA12T3_2	.	DNA	71	tiny	660	high	0	pericentromeric	197409	.	.	.	.	.	.	.
Chr3	13727865	13727935	AT3TE55940	.	+	ATDNA12T3_2	.	DNA	71	tiny	660	high	0	pericentromeric	197915	.	.	LowExpressed	.	.	.	.
Chr3	13728351	13728414	AT3TE55945	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	198401	.	.	.	.	.	.	.
Chr3	13728856	13728927	AT3TE55950	.	+	ATDNA12T3_2	.	DNA	71	tiny	660	high	0	pericentromeric	198907	no-CHH	DCL3-RdDM	.	.	.	.	.
Chr3	13729363	13729433	AT3TE55955	.	+	ATDNA12T3_2	.	DNA	71	tiny	660	high	0	pericentromeric	199413	.	.	.	.	.	.	.
Chr3	13729868	13730425	AT3TE55960	.	+	ATDNA12T3_2	.	DNA	557	short	660	high	0	pericentromeric	199919	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	13730862	13730932	AT3TE55965	.	+	ATDNA12T3_2	.	DNA	71	tiny	660	high	0	pericentromeric	200912	.	.	.	.	.	.	.
Chr3	13731349	13731412	AT3TE55970	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	201399	.	.	.	.	.	.	.
Chr3	13731855	13731925	AT3TE55975	.	+	ATDNA12T3_2	.	DNA	71	tiny	660	high	0	pericentromeric	201905	.	.	.	.	.	.	.
Chr3	13732360	13732917	AT3TE55980	.	+	ATDNA12T3_2	.	DNA	557	short	660	high	0	pericentromeric	202411	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	13733353	13733423	AT3TE55985	.	+	ATDNA12T3_2	.	DNA	71	tiny	660	high	0	pericentromeric	203403	.	.	.	.	.	.	.
Chr3	13733840	13733903	AT3TE55990	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	203890	.	.	.	.	.	.	.
Chr3	13734347	13734417	AT3TE55995	.	+	ATDNA12T3_2	.	DNA	71	tiny	660	high	0	pericentromeric	204397	.	.	.	.	.	.	.
Chr3	13734853	13734923	AT3TE56000	.	+	ATDNA12T3_2	.	DNA	71	tiny	660	high	0	pericentromeric	204903	.	.	.	.	.	.	.
Chr3	13735339	13735402	AT3TE56005	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	205389	.	.	.	.	.	.	.
Chr3	13735935	13736001	AT3TE56010	.	+	ATDNA12T3_2	.	DNA	67	tiny	660	high	0	pericentromeric	205985	.	.	.	.	.	.	.
Chr3	13736423	13736493	AT3TE56015	.	+	ATDNA12T3_2	.	DNA	71	tiny	660	high	0	pericentromeric	206473	.	.	.	.	.	.	.
Chr3	13736921	13736990	AT3TE56020	.	+	ATDNA12T3_2	.	DNA	70	tiny	660	high	0	pericentromeric	206971	.	.	.	.	.	.	.
Chr3	13737425	13737494	AT3TE56025	.	+	ATDNA12T3_2	.	DNA	70	tiny	660	high	0	pericentromeric	207475	.	.	.	.	.	.	.
Chr3	13737937	13738007	AT3TE56030	.	+	ATDNA12T3_2	.	DNA	71	tiny	660	high	0	pericentromeric	207987	.	.	.	.	.	.	.
Chr3	13738093	13739443	AT3TE56035	.	+	ATHILA6B	Gypsy	LTR	1350	short	134	medium	0	pericentromeric	208144	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	13739786	13742675	AT3TE56040	.	-	ATGP3	Gypsy	LTR	2890	medium	60	medium	0	pericentromeric	209836	.	.	.	.	.	.	.
Chr3	13742676	13742731	AT3TE56045	.	-	ATGP7	Gypsy	LTR	56	tiny	47	low	0	pericentromeric	212726	.	.	.	.	.	.	.
Chr3	13744681	13744744	AT3TE56055	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	214731	.	.	.	.	.	.	.
Chr3	13745188	13745258	AT3TE56060	.	+	ATDNA12T3_2	.	DNA	71	tiny	660	high	0	pericentromeric	215238	.	.	.	.	.	.	.
Chr3	13745676	13745738	AT3TE56065	.	+	ATDNA12T3_2	.	DNA	63	tiny	660	high	0	pericentromeric	215726	.	.	.	.	.	.	.
Chr3	13746184	13746255	AT3TE56070	.	+	ATDNA12T3_2	.	DNA	71	tiny	660	high	0	pericentromeric	216235	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13746693	13746763	AT3TE56075	.	+	ATDNA12T3_2	.	DNA	71	tiny	660	high	0	pericentromeric	216743	.	.	.	.	.	.	.
Chr3	13747176	13747240	AT3TE56080	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	217227	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13747681	13747745	AT3TE56085	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	217732	no-CHH	RDR6-RdDM	.	.	.	.	.
Chr3	13748191	13748254	AT3TE56090	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	218241	.	.	.	.	.	.	.
Chr3	13748677	13748740	AT3TE56095	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	218727	.	.	.	.	.	.	.
Chr3	13749162	13749232	AT3TE56100	.	+	ATDNA12T3_2	.	DNA	71	tiny	660	high	0	pericentromeric	219212	.	.	.	.	.	.	.
Chr3	13749649	13749712	AT3TE56105	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	219699	.	.	.	.	.	.	.
Chr3	13750179	13750243	AT3TE56130	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	220230	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	13750684	13750747	AT3TE56135	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	220734	.	.	LowExpressed	.	.	.	.
Chr3	13751192	13751255	AT3TE56140	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	221242	.	.	LowExpressed	.	.	.	.
Chr3	13751698	13751761	AT3TE56145	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	221748	.	.	.	.	.	.	.
Chr3	13752443	13752506	AT3TE56150	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	222493	.	.	.	.	.	.	.
Chr3	13752943	13753012	AT3TE56155	.	+	ATDNA12T3_2	.	DNA	70	tiny	660	high	0	pericentromeric	222993	.	.	.	.	.	.	.
Chr3	13753429	13753498	AT3TE56160	.	+	ATDNA12T3_2	.	DNA	70	tiny	660	high	0	pericentromeric	223479	.	.	.	.	.	.	.
Chr3	13753942	13754012	AT3TE56165	.	+	ATDNA12T3_2	.	DNA	71	tiny	660	high	0	pericentromeric	223992	.	.	.	.	.	.	.
Chr3	13754430	13754500	AT3TE56170	.	+	ATDNA12T3_2	.	DNA	71	tiny	660	high	0	pericentromeric	224480	.	.	.	.	.	.	.
Chr3	13754926	13754995	AT3TE56175	.	+	ATDNA12T3_2	.	DNA	70	tiny	660	high	0	pericentromeric	224976	.	.	.	.	.	.	.
Chr3	13755432	13755498	AT3TE56180	.	+	ATDNA12T3_2	.	DNA	67	tiny	660	high	0	pericentromeric	225482	.	.	.	.	.	.	.
Chr3	13755942	13756012	AT3TE56185	.	+	ATDNA12T3_2	.	DNA	71	tiny	660	high	0	pericentromeric	225992	.	.	.	.	.	.	.
Chr3	13756440	13756509	AT3TE56190	.	+	ATDNA12T3_2	.	DNA	70	tiny	660	high	0	pericentromeric	226490	.	.	.	.	.	.	.
Chr3	13757000	13757066	AT3TE56195	.	+	ATDNA12T3_2	.	DNA	67	tiny	660	high	0	pericentromeric	227050	.	.	.	.	.	.	.
Chr3	13757948	13758011	AT3TE56200	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	227998	.	.	.	.	.	.	.
Chr3	13758452	13758522	AT3TE56205	.	+	ATDNA12T3_2	.	DNA	71	tiny	660	high	0	pericentromeric	228502	.	.	.	.	.	.	.
Chr3	13758937	13759001	AT3TE56210	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	228988	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13759423	13759486	AT3TE56215	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	229473	.	.	.	.	.	.	.
Chr3	13759929	13759998	AT3TE56220	.	+	ATDNA12T3_2	.	DNA	70	tiny	660	high	0	pericentromeric	229979	.	.	.	.	.	.	.
Chr3	13760414	13760477	AT3TE56225	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	230464	.	.	.	.	.	.	.
Chr3	13760918	13760988	AT3TE56230	.	+	ATDNA12T3_2	.	DNA	71	tiny	660	high	0	pericentromeric	230968	.	.	.	.	.	.	.
Chr3	13761404	13761467	AT3TE56235	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	231454	.	.	.	.	.	.	.
Chr3	13761908	13761978	AT3TE56240	.	+	ATDNA12T3_2	.	DNA	71	tiny	660	high	0	pericentromeric	231958	.	.	.	.	.	.	.
Chr3	13762394	13762457	AT3TE56245	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	232444	.	.	.	.	.	.	.
Chr3	13762879	13762943	AT3TE56250	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	232930	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	13763386	13763455	AT3TE56255	.	+	ATDNA12T3_2	.	DNA	70	tiny	660	high	0	pericentromeric	233436	.	.	.	.	.	.	.
Chr3	13763871	13763934	AT3TE56260	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	233921	.	.	.	.	.	.	.
Chr3	13764375	13764445	AT3TE56265	.	+	ATDNA12T3_2	.	DNA	71	tiny	660	high	0	pericentromeric	234425	.	.	.	.	.	.	.
Chr3	13764861	13764924	AT3TE56270	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	234911	.	.	.	.	.	.	.
Chr3	13765368	13765438	AT3TE56275	.	+	ATDNA12T3_2	.	DNA	71	tiny	660	high	0	pericentromeric	235418	.	.	.	.	.	.	.
Chr3	13765856	13765918	AT3TE56280	.	+	ATDNA12T3_2	.	DNA	63	tiny	660	high	0	pericentromeric	235906	.	.	.	.	.	.	.
Chr3	13766365	13766436	AT3TE56285	.	+	ATDNA12T3_2	.	DNA	72	tiny	660	high	0	pericentromeric	236415	.	.	.	.	.	.	.
Chr3	13766687	13766748	AT3TE56290	.	+	ATDNA12T3_2	.	DNA	62	tiny	660	high	0	pericentromeric	236737	.	.	.	.	.	.	.
Chr3	13767190	13767253	AT3TE56295	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	237240	.	.	.	.	.	.	.
Chr3	13767695	13767758	AT3TE56300	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	237745	.	.	.	.	.	.	.
Chr3	13768197	13768269	AT3TE56305	.	+	ATDNA12T3_2	.	DNA	72	tiny	660	high	0	pericentromeric	238248	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13768709	13768772	AT3TE56310	.	+	ATDNA12T3_2	.	DNA	63	tiny	660	high	0	pericentromeric	238760	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13769210	13769274	AT3TE56315	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	239261	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13769716	13769779	AT3TE56320	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	239766	.	.	.	.	.	.	.
Chr3	13770222	13770293	AT3TE56325	.	+	ATDNA12T3_2	.	DNA	72	tiny	660	high	0	pericentromeric	240272	.	.	.	.	.	.	.
Chr3	13770724	13770787	AT3TE56330	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	240774	.	.	.	.	.	.	.
Chr3	13771229	13771291	AT3TE56335	.	+	ATDNA12T3_2	.	DNA	62	tiny	660	high	0	pericentromeric	241280	RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13771732	13771796	AT3TE56340	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	241783	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	13772236	13772300	AT3TE56345	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	242287	no-CHH	no-CHH	.	.	.	.	.
Chr3	13772741	13772812	AT3TE56350	.	+	ATDNA12T3_2	.	DNA	72	tiny	660	high	0	pericentromeric	242791	.	.	.	.	.	.	.
Chr3	13773249	13773312	AT3TE56355	.	+	ATDNA12T3_2	.	DNA	63	tiny	660	high	0	pericentromeric	243300	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr3	13773750	13773813	AT3TE56360	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	243800	.	.	.	.	.	.	.
Chr3	13774255	13774318	AT3TE56365	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	244305	.	.	LowExpressed	.	.	.	.
Chr3	13774759	13774822	AT3TE56370	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	244809	.	.	LowExpressed	.	.	.	.
Chr3	13775263	13775327	AT3TE56375	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	245314	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	13775766	13775829	AT3TE56380	.	+	ATDNA12T3_2	.	DNA	63	tiny	660	high	0	pericentromeric	244857	no-RdDM	no-CHH	.	.	.	.	.
Chr3	13776271	13776335	AT3TE56385	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	244351	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	13776776	13776840	AT3TE56390	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	243846	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13777273	13777344	AT3TE56395	.	+	ATDNA12T3_2	.	DNA	71	tiny	660	high	0	pericentromeric	243342	RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13777784	13777847	AT3TE56400	.	+	ATDNA12T3_2	.	DNA	63	tiny	660	high	0	pericentromeric	242839	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	13778283	13778347	AT3TE56405	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	242339	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13778795	13778859	AT3TE56410	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	241827	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	13779301	13779365	AT3TE56415	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	241321	DCL3-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13779805	13779869	AT3TE56420	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	240817	no-CHH	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	13780316	13780379	AT3TE56425	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	240307	.	.	.	.	.	.	.
Chr3	13780823	13780886	AT3TE56430	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	239800	.	.	.	.	.	.	.
Chr3	13781322	13781391	AT3TE56435	.	+	ATDNA12T3_2	.	DNA	70	tiny	660	high	0	pericentromeric	239295	.	.	.	.	.	.	.
Chr3	13781833	13781896	AT3TE56440	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	238790	.	.	.	.	.	.	.
Chr3	13782340	13782403	AT3TE56445	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	238283	.	.	.	.	.	.	.
Chr3	13782839	13782908	AT3TE56450	.	+	ATDNA12T3_2	.	DNA	70	tiny	660	high	0	pericentromeric	237778	.	.	.	.	.	.	.
Chr3	13783351	13783414	AT3TE56455	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	237272	.	.	.	.	.	.	.
Chr3	13783850	13783919	AT3TE56460	.	+	ATDNA12T3_2	.	DNA	70	tiny	660	high	0	pericentromeric	236767	.	.	LowExpressed	.	.	.	.
Chr3	13784362	13784425	AT3TE56465	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	236261	.	.	.	.	.	.	.
Chr3	13784861	13784930	AT3TE56470	.	+	ATDNA12T3_2	.	DNA	70	tiny	660	high	0	pericentromeric	235756	.	.	.	.	.	.	.
Chr3	13785373	13785436	AT3TE56475	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	235250	.	.	.	.	.	.	.
Chr3	13785696	13785766	AT3TE56480	.	+	ATDNA12T3_2	.	DNA	71	tiny	660	high	0	pericentromeric	234920	.	.	.	.	.	.	.
Chr3	13786182	13786245	AT3TE56485	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	234441	.	.	.	.	.	.	.
Chr3	13786689	13786759	AT3TE56490	.	+	ATDNA12T3_2	.	DNA	71	tiny	660	high	0	pericentromeric	233927	.	.	LowExpressed	.	.	.	.
Chr3	13787175	13787238	AT3TE56495	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	233448	.	.	LowExpressed	.	.	.	.
Chr3	13787681	13787752	AT3TE56500	.	+	ATDNA12T3_2	.	DNA	71	tiny	660	high	0	pericentromeric	232934	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	13788168	13788231	AT3TE56505	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	232455	.	.	.	.	.	.	.
Chr3	13788672	13788742	AT3TE56510	.	+	ATDNA12T3_2	.	DNA	71	tiny	660	high	0	pericentromeric	231944	.	.	.	.	.	.	.
Chr3	13789149	13789212	AT3TE56515	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	231474	.	.	.	.	.	.	.
Chr3	13789656	13789726	AT3TE56520	.	+	ATDNA12T3_2	.	DNA	71	tiny	660	high	0	pericentromeric	230960	.	.	.	.	.	.	.
Chr3	13790142	13790200	AT3TE56525	.	+	ATDNA12T3_2	.	DNA	59	tiny	660	high	0	pericentromeric	230486	.	.	.	.	.	.	.
Chr3	13790655	13790718	AT3TE56530	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	229968	.	.	.	.	.	.	.
Chr3	13791165	13791228	AT3TE56535	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	229458	.	.	.	.	.	.	.
Chr3	13791651	13791714	AT3TE56540	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	228972	.	.	.	.	.	.	.
Chr3	13792135	13792685	AT3TE56545	.	+	ATDNA12T3_2	.	DNA	550	short	660	high	0	pericentromeric	228001	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13793107	13793171	AT3TE56550	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	227515	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13793592	13793663	AT3TE56555	.	+	ATDNA12T3_2	.	DNA	71	tiny	660	high	0	pericentromeric	227023	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	13794078	13794142	AT3TE56560	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	226544	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13794564	13794635	AT3TE56565	.	+	ATDNA12T3_2	.	DNA	71	tiny	660	high	0	pericentromeric	226051	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	13795050	13795121	AT3TE56570	.	+	ATDNA12T3_2	.	DNA	71	tiny	660	high	0	pericentromeric	225565	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	13795539	13795603	AT3TE56575	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	225083	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	13796044	13796107	AT3TE56580	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	224579	.	.	.	.	.	.	.
Chr3	13796544	13796613	AT3TE56585	.	+	ATDNA12T3_2	.	DNA	70	tiny	660	high	0	pericentromeric	224073	.	.	.	.	.	.	.
Chr3	13797030	13797099	AT3TE56590	.	+	ATDNA12T3_2	.	DNA	70	tiny	660	high	0	pericentromeric	223587	.	.	.	.	.	.	.
Chr3	13797543	13797613	AT3TE56595	.	+	ATDNA12T3_2	.	DNA	71	tiny	660	high	0	pericentromeric	223073	.	.	.	.	.	.	.
Chr3	13798031	13798101	AT3TE56600	.	+	ATDNA12T3_2	.	DNA	71	tiny	660	high	0	pericentromeric	222585	.	.	.	.	.	.	.
Chr3	13798527	13798596	AT3TE56605	.	+	ATDNA12T3_2	.	DNA	70	tiny	660	high	0	pericentromeric	222090	.	.	.	.	.	.	.
Chr3	13799033	13799099	AT3TE56610	.	+	ATDNA12T3_2	.	DNA	67	tiny	660	high	0	pericentromeric	221587	.	.	.	.	.	.	.
Chr3	13800702	13800766	AT3TE56615	.	-	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	219920	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13801210	13801239	AT3TE56620	.	+	ROMANIAT5	Copia	LTR	29	tiny	49	low	0	pericentromeric	219447	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	13801245	13801715	AT3TE56625	.	+	ATHILA6A	Gypsy	LTR	470	short	247	high	0	pericentromeric	218971	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	13801715	13806172	AT3TE56630	.	+	ATHILA	Gypsy	LTR	4457	medium	198	medium	0	pericentromeric	214514	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	13806172	13806225	AT3TE56635	.	+	ATHILA2	Gypsy	LTR	53	tiny	413	high	0	pericentromeric	214461	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	13806244	13809268	AT3TE56640	.	+	ATHILA	Gypsy	LTR	3024	medium	198	medium	0	pericentromeric	211418	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	13806710,13806710	13807294,13808826	+,+	transcript_id-"23ec9fba-d9b6-4ab0-914b-9ef061249c5a|9",transcript_id-"fa16d998-2a3b-4804-a3cd-90a04f235a63|191"
Chr3	13809268	13809337	AT3TE56645	.	+	ATHILA3	Gypsy	LTR	69	tiny	243	high	0	pericentromeric	211349	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	13809602	13809665	AT3TE56650	.	-	ATDNA12T3_2	.	DNA	63	tiny	660	high	0	pericentromeric	211021	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	13810105	13810551	AT3TE56655	.	-	ATDNA12T3_2	.	DNA	446	short	660	high	0	pericentromeric	210135	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13810986	13811558	AT3TE56660	.	-	ATDNA12T3_2	.	DNA	572	short	660	high	0	pericentromeric	209128	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	13811998	13812563	AT3TE56665	.	-	ATDNA12T3_2	.	DNA	565	short	660	high	0	pericentromeric	208123	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	13813008	13813573	AT3TE56670	.	-	ATDNA12T3_2	.	DNA	565	short	660	high	0	pericentromeric	207113	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	13814017	13814081	AT3TE56675	.	-	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	206605	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	13814519	13815086	AT3TE56680	.	-	ATDNA12T3_2	.	DNA	567	short	660	high	0	pericentromeric	205600	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	13815529	13815592	AT3TE56685	.	-	ATDNA12T3_2	.	DNA	63	tiny	660	high	0	pericentromeric	205094	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	13816036	13816097	AT3TE56690	.	-	ATDNA12T3_2	.	DNA	61	tiny	660	high	0	pericentromeric	204589	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	13816378	13816426	AT3TE56695	.	-	ATHILA6B	Gypsy	LTR	48	tiny	134	medium	0	pericentromeric	204260	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	13816426	13821632	AT3TE56700	.	-	ATHILA	Gypsy	LTR	5206	long	198	medium	0	pericentromeric	199054	no-RdDM	no-RdDM	ExpressedAndAnnotated	13816802,13818099,13818603,13818603	13816459,13817869,13817972,13818107	-,-,-,-	transcript_id-"80e6ff08-b54c-4973-ae35-81236b910d0f|6",transcript_id-"527616bb-d381-4a11-8856-f88237b61c54|5",transcript_id-"f3ad519d-3143-475e-8fa3-9e71d362d496|70",transcript_id-"ba792434-f425-4d44-9fbe-00b8b0e8d7c6|5"
Chr3	13821633	13821771	AT3TE56705	.	-	ATHILA6B	Gypsy	LTR	138	short	134	medium	0	pericentromeric	198915	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	13821771	13826423	AT3TE56710	.	-	ATHILA6A	Gypsy	LTR	4652	medium	247	high	0	pericentromeric	194263	no-RdDM	no-RdDM	ExpressedAndAnnotated	13825289	13825165	-	transcript_id-"15325947-dce8-4c0e-9c42-d3a649c859ee|4"
Chr3	13823354	13823939	AT3TE56715	.	+	ATREP13	Helitron	RC	585	short	106	medium	0	pericentromeric	196747	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	13823946	13825759	AT3TE56720	.	-	ATHILA	Gypsy	LTR	1813	short	198	medium	0	pericentromeric	194927	no-RdDM	no-RdDM	ExpressedAndAnnotated	13825289	13825165	-	transcript_id-"15325947-dce8-4c0e-9c42-d3a649c859ee|4"
Chr3	13826423	13826607	AT3TE56725	.	-	ATHILA2	Gypsy	LTR	184	short	413	high	0	pericentromeric	194079	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	13826607	13830489	AT3TE56730	.	-	ATHILA6A	Gypsy	LTR	3882	medium	247	high	0	pericentromeric	190197	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	13830490	13830655	AT3TE56735	.	-	ATHILA	Gypsy	LTR	165	short	198	medium	0	pericentromeric	190031	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	13830655	13834441	AT3TE56740	.	-	ATHILA	Gypsy	LTR	3786	medium	198	medium	0	pericentromeric	186245	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	13834441	13834892	AT3TE56745	.	-	ATHILA	Gypsy	LTR	451	short	198	medium	0	pericentromeric	185794	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	13834893	13834915	AT3TE56750	.	-	ATHILA6A	Gypsy	LTR	22	tiny	247	high	0	pericentromeric	185771	DCL3-RdDM	no-RdDM	.	.	.	.	.
Chr3	13835206	13835780	AT3TE56755	.	-	ATDNA12T3_2	.	DNA	574	short	660	high	0	pericentromeric	184906	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	13836221	13836767	AT3TE56760	.	-	ATDNA12T3_2	.	DNA	546	short	660	high	0	pericentromeric	183919	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	13837212	13837275	AT3TE56765	.	-	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	183411	.	.	.	.	.	.	.
Chr3	13837721	13838305	AT3TE56770	.	-	ATDNA12T3_2	.	DNA	584	short	660	high	0	pericentromeric	182381	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	13838730	13838793	AT3TE56775	.	-	ATDNA12T3_2	.	DNA	63	tiny	660	high	0	pericentromeric	181893	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13839240	13839303	AT3TE56780	.	-	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	181383	.	.	.	.	.	.	.
Chr3	13839772	13839835	AT3TE56785	.	-	ATDNA12T3_2	.	DNA	63	tiny	660	high	0	pericentromeric	180851	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13840210	13840274	AT3TE56790	.	-	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	180412	PolIV-and-RDR6-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	13840713	13840784	AT3TE56795	.	-	ATDNA12T3_2	.	DNA	71	tiny	660	high	0	pericentromeric	179902	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13840937	13841745	AT3TE56800	.	-	HELITRONY1D	Helitron	RC	808	short	756	high	0	pericentromeric	178941	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	13843263	13843373	AT3TE56805	.	-	HELITRON3	Helitron	RC	110	short	53	medium	0	pericentromeric	177313	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr3	13843536	13843600	AT3TE56810	.	-	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	177086	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13844553	13844616	AT3TE56815	.	-	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	176070	.	.	.	.	.	.	.
Chr3	13845050	13845113	AT3TE56820	.	-	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	175573	.	.	.	.	.	.	.
Chr3	13845554	13845618	AT3TE56825	.	-	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	175068	no-CHH	RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	13846061	13846125	AT3TE56830	.	-	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	174561	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13846568	13846631	AT3TE56835	.	-	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	174055	.	.	.	.	.	.	.
Chr3	13847604	13847667	AT3TE56840	.	-	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	173019	.	.	.	.	.	.	.
Chr3	13848107	13848170	AT3TE56845	.	-	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	172516	.	.	LowExpressed	.	.	.	.
Chr3	13849172	13849234	AT3TE56850	.	-	ATDNA12T3_2	.	DNA	63	tiny	660	high	0	pericentromeric	171452	.	.	LowExpressed	.	.	.	.
Chr3	13849654	13849716	AT3TE56855	.	-	ATDNA12T3_2	.	DNA	63	tiny	660	high	0	pericentromeric	170970	.	.	.	.	.	.	.
Chr3	13850161	13850224	AT3TE56860	.	-	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	170462	.	.	.	.	.	.	.
Chr3	13850671	13850733	AT3TE56865	.	-	ATDNA12T3_2	.	DNA	63	tiny	660	high	0	pericentromeric	169953	.	.	.	.	.	.	.
Chr3	13851179	13851242	AT3TE56870	.	-	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	169444	.	.	.	.	.	.	.
Chr3	13852157	13852219	AT3TE56875	.	-	ATDNA12T3_2	.	DNA	63	tiny	660	high	0	pericentromeric	168467	.	.	.	.	.	.	.
Chr3	13852506	13852569	AT3TE56880	.	-	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	168117	.	.	.	.	.	.	.
Chr3	13853011	13853074	AT3TE56885	.	-	ATDNA12T3_2	.	DNA	63	tiny	660	high	0	pericentromeric	167612	no-RdDM	no-CHH	.	.	.	.	.
Chr3	13853520	13853583	AT3TE56890	.	-	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	167103	.	.	.	.	.	.	.
Chr3	13854025	13854086	AT3TE56895	.	-	ATDNA12T3_2	.	DNA	61	tiny	660	high	0	pericentromeric	166600	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	13854535	13854599	AT3TE56900	.	-	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	166087	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	13855046	13855108	AT3TE56905	.	-	ATDNA12T3_2	.	DNA	63	tiny	660	high	0	pericentromeric	165578	.	.	.	.	.	.	.
Chr3	13855903	13855966	AT3TE56910	.	-	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	164720	.	.	.	.	.	.	.
Chr3	13856412	13856475	AT3TE56915	.	-	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	164211	.	.	.	.	.	.	.
Chr3	13856916	13856979	AT3TE56920	.	-	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	163707	.	.	.	.	.	.	.
Chr3	13857053	13857115	AT3TE56925	.	-	ATDNA12T3_2	.	DNA	63	tiny	660	high	0	pericentromeric	163571	.	.	.	.	.	.	.
Chr3	13857560	13857623	AT3TE56930	.	-	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	163063	.	.	.	.	.	.	.
Chr3	13858069	13858133	AT3TE56935	.	-	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	162553	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13858574	13858637	AT3TE56940	.	-	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	162049	.	.	LowExpressed	.	.	.	.
Chr3	13858740	13858791	AT3TE56945	.	-	ATDNA12T3_2	.	DNA	52	tiny	660	high	0	pericentromeric	161895	.	.	.	.	.	.	.
Chr3	13859235	13859808	AT3TE56950	.	-	ATDNA12T3_2	.	DNA	573	short	660	high	0	pericentromeric	160878	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	13860254	13860317	AT3TE56955	.	-	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	160369	.	.	.	.	.	.	.
Chr3	13861230	13861805	AT3TE56960	.	-	ATDNA12T3_2	.	DNA	575	short	660	high	0	pericentromeric	158881	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	13862247	13862297	AT3TE56965	.	-	ATDNA12T3_2	.	DNA	51	tiny	660	high	0	pericentromeric	158389	.	.	.	.	.	.	.
Chr3	13862791	13862855	AT3TE56970	.	-	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	157831	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr3	13863302	13863364	AT3TE56975	.	-	ATDNA12T3_2	.	DNA	63	tiny	660	high	0	pericentromeric	157322	.	.	.	.	.	.	.
Chr3	13863809	13863872	AT3TE56980	.	-	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	156814	.	.	.	.	.	.	.
Chr3	13864319	13864381	AT3TE56985	.	-	ATDNA12T3_2	.	DNA	63	tiny	660	high	0	pericentromeric	156305	.	.	.	.	.	.	.
Chr3	13864827	13864890	AT3TE56990	.	-	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	155796	.	.	.	.	.	.	.
Chr3	13865336	13865399	AT3TE56995	.	-	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	155287	.	.	.	.	.	.	.
Chr3	13865839	13865903	AT3TE57000	.	-	ATDNA12T3_2	.	DNA	64	tiny	660	high	0	pericentromeric	154783	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	13866345	13866407	AT3TE57005	.	-	ATDNA12T3_2	.	DNA	63	tiny	660	high	0	pericentromeric	154279	.	.	.	.	.	.	.
Chr3	13866826	13866889	AT3TE57010	.	-	ATDNA12T3_2	.	DNA	63	tiny	660	high	0	pericentromeric	153797	DCL3-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13867606	13867669	AT3TE57015	.	-	ATDNA12T3_2	.	DNA	64	tiny	660	high	484	pericentromeric	153017	.	.	.	.	.	.	.
Chr3	13868114	13868177	AT3TE57020	.	-	ATDNA12T3_2	.	DNA	64	tiny	660	high	992	pericentromeric	152509	.	.	.	.	.	.	.
Chr3	13868619	13868683	AT3TE57025	.	-	ATDNA12T3_2	.	DNA	64	tiny	660	high	1498	pericentromeric	152003	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	13869123	13869187	AT3TE57030	.	-	ATDNA12T3_2	.	DNA	64	tiny	660	high	2002	pericentromeric	151499	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13869627	13869690	AT3TE57035	.	-	ATDNA12T3_2	.	DNA	64	tiny	660	high	2505	pericentromeric	150996	.	.	.	.	.	.	.
Chr3	13870135	13870198	AT3TE57040	.	-	ATDNA12T3_2	.	DNA	64	tiny	660	high	3013	pericentromeric	150488	.	.	.	.	.	.	.
Chr3	13870638	13870702	AT3TE57045	.	-	ATDNA12T3_2	.	DNA	64	tiny	660	high	3517	pericentromeric	149984	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13870711	13877563	AT3TE57050	.	+	ATHILA	Gypsy	LTR	6852	long	198	medium	3590	pericentromeric	143123	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	13874513	13876491	+	transcript_id-"ccbc62e1-7802-4a20-9aad-82f38f9df9d6|16"
Chr3	13877563	13878027	AT3TE57055	.	-	ATHILA3	Gypsy	LTR	464	short	243	high	10442	pericentromeric	142659	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	13878027	13882805	AT3TE57060	.	+	ATLANTYS1	Gypsy	LTR	4778	medium	153	medium	10906	pericentromeric	137881	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	13882806	13883759	AT3TE57065	.	-	ATHILA4C	Gypsy	LTR	953	short	206	high	15685	pericentromeric	136927	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	13883876	13883940	AT3TE57070	.	-	ATHILA0_I	Gypsy	LTR	64	tiny	138	medium	16755	pericentromeric	136746	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13883940	13884000	AT3TE57075	.	-	ATHILA2	Gypsy	LTR	60	tiny	413	high	16819	pericentromeric	136686	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13884000	13884023	AT3TE57080	.	-	ATHILA0_I	Gypsy	LTR	23	tiny	138	medium	16879	pericentromeric	136663	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13884027	13894235	AT3TE57085	.	+	ATLANTYS2	Gypsy	LTR	10208	long	179	medium	16906	pericentromeric	126451	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	13891013,13893322	13890811,13890843	-,-	transcript_id-"10b021f4-db3b-48cb-b2da-ab75564ca9a5|5",transcript_id-"dfd8b302-b0ce-4461-904c-b58d4fd2610a|5"
Chr3	13894235	13895199	AT3TE57090	.	+	ATGP10	Gypsy	LTR	964	short	165	medium	27114	pericentromeric	125487	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	13895199	13897812	AT3TE57095	.	+	ATGP10	Gypsy	LTR	2613	medium	165	medium	28078	pericentromeric	122874	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	13899549	13900332	AT3TE57100	.	+	ATGP10	Gypsy	LTR	783	short	165	medium	32428	pericentromeric	120354	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	13902107	13902134	AT3TE57105	.	+	ATHILA2	Gypsy	LTR	27	tiny	413	high	34986	pericentromeric	118552	DCL3-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	13902134	13905745	AT3TE57110	.	+	ATHILA2	Gypsy	LTR	3611	medium	413	high	35013	pericentromeric	114941	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	13905745	13905828	AT3TE57115	.	+	ATHILA2	Gypsy	LTR	83	tiny	413	high	38624	pericentromeric	114858	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	13905828	13905884	AT3TE57120	.	+	ATHILA2	Gypsy	LTR	56	tiny	413	high	38707	pericentromeric	114802	no-RdDM	no-CHH	.	.	.	.	.
Chr3	13905884	13909368	AT3TE57125	.	+	ATHILA6B	Gypsy	LTR	3484	medium	134	medium	38763	pericentromeric	111318	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13909368	13909465	AT3TE57130	.	+	ATHILA2	Gypsy	LTR	97	tiny	413	high	42247	pericentromeric	111221	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13909465	13909631	AT3TE57135	.	+	ATHILA2	Gypsy	LTR	166	short	413	high	42344	pericentromeric	111055	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13909631	13909725	AT3TE57140	.	+	ATHILA2	Gypsy	LTR	94	tiny	413	high	42510	pericentromeric	110961	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13909725	13909789	AT3TE57145	.	+	ATHILA6A	Gypsy	LTR	64	tiny	247	high	42604	pericentromeric	110897	no-RdDM	no-CHH	.	.	.	.	.
Chr3	13909789	13915698	AT3TE57150	.	+	ATHILA6A	Gypsy	LTR	5909	long	247	high	42668	pericentromeric	104988	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	13917161	13917232	AT3TE57155	.	+	ATGP10	Gypsy	LTR	71	tiny	165	medium	50040	pericentromeric	103454	no-RdDM	no-CHH	.	.	.	.	.
Chr3	13918895	13919443	AT3TE57160	.	+	ATGP10	Gypsy	LTR	548	short	165	medium	51774	pericentromeric	101243	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	13917879,13917879	13919229,13919229	+,+	transcript_id-"b91eab46-9016-4b6e-adc6-acd2e9852e1b|8",transcript_id-"ca59f924-f75d-43e5-bc48-afb7e0f3e1cd|7"
Chr3	13919443	13924434	AT3TE57165	.	+	ATGP10	Gypsy	LTR	4991	medium	165	medium	52322	pericentromeric	96252	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	13924435	13924472	AT3TE57170	.	+	ATLANTYS2	Gypsy	LTR	37	tiny	179	medium	57314	pericentromeric	96214	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13924472	13925095	AT3TE57175	.	-	ATHILA2	Gypsy	LTR	623	short	413	high	57351	pericentromeric	95591	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	13925095	13929403	AT3TE57180	.	+	ATHILA	Gypsy	LTR	4308	medium	198	medium	57974	pericentromeric	91283	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	13929403	13929536	AT3TE57185	.	+	ATHILA6B	Gypsy	LTR	133	short	134	medium	62282	pericentromeric	91150	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	13929536	13930184	AT3TE57190	.	+	ATHILA	Gypsy	LTR	648	short	198	medium	62415	pericentromeric	90502	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	13930195	13930302	AT3TE57195	.	+	ATHILA	Gypsy	LTR	107	short	198	medium	63074	pericentromeric	90384	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13930306	13933787	AT3TE57200	.	+	ATHILA	Gypsy	LTR	3481	medium	198	medium	63185	pericentromeric	86899	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	13933787	13933808	AT3TE57205	.	+	ATHILA	Gypsy	LTR	21	tiny	198	medium	66666	pericentromeric	86878	no-RdDM	no-CHH	.	.	.	.	.
Chr3	13933808	13934345	AT3TE57210	.	-	ATHILA3	Gypsy	LTR	537	short	243	high	66687	pericentromeric	86341	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	13934392	13935886	AT3TE57215	.	-	ATHILA5	Gypsy	LTR	1494	short	131	medium	67271	pericentromeric	84800	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	13935030	13935055	AT3TE57220	.	-	ATHILA5	Gypsy	LTR	25	tiny	131	medium	67909	pericentromeric	85631	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	13936200	13940947	AT3TE57225	.	-	ATHILA3	Gypsy	LTR	4747	medium	243	high	69079	pericentromeric	79739	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	13940947	13943608	AT3TE57230	.	-	ATHILA4A	Gypsy	LTR	2661	medium	310	high	73826	pericentromeric	77078	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13943608	13944323	AT3TE57235	.	-	ATHILA4C	Gypsy	LTR	715	short	206	high	76487	pericentromeric	76363	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	13944323	13945162	AT3TE57240	.	-	ATHILA4	Gypsy	LTR	839	short	250	high	77202	pericentromeric	75524	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	13945271	13945302	AT3TE57245	.	-	ATHILA4	Gypsy	LTR	32	tiny	250	high	78149	pericentromeric	75384	.	.	.	.	.	.	.
Chr3	13945302	13946458	AT3TE57250	.	-	ATHILA4A	Gypsy	LTR	1156	short	310	high	78181	pericentromeric	74228	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	13946458	13949676	AT3TE57255	.	-	ATHILA3	Gypsy	LTR	3218	medium	243	high	79337	pericentromeric	71010	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	13949676	13949702	AT3TE57260	.	-	ATHILA5	Gypsy	LTR	26	tiny	131	medium	82555	pericentromeric	70984	no-RdDM	no-CHH	.	.	.	.	.
Chr3	13949702	13954677	AT3TE57265	.	+	ATHILA2	Gypsy	LTR	4975	medium	413	high	82581	pericentromeric	66009	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	13954677	13954900	AT3TE57270	.	-	ATGP10	Gypsy	LTR	223	short	165	medium	87556	pericentromeric	65786	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	13954900	13959339	AT3TE57275	.	-	ATENSPM10	En-Spm	DNA	4439	medium	81	medium	87779	pericentromeric	61347	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	13959554	13955259	-	transcript_id-"94640e66-3ac5-4b1f-8587-a315f0654214|4"
Chr3	13955951	13955994	AT3TE57280	.	-	ATENSPM7	En-Spm	DNA	43	tiny	74	medium	88830	pericentromeric	64692	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	13956390	13956461	AT3TE57285	.	-	ATENSPM11	En-Spm	DNA	71	tiny	47	low	89269	pericentromeric	64225	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13959339	13959444	AT3TE57295	.	-	ATENSPM11	En-Spm	DNA	105	short	47	low	92218	pericentromeric	61242	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	13959904	13960118	AT3TE57300	.	+	TNAT1A	.	DNA	214	short	162	medium	92783	pericentromeric	60568	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	13960417	13960449	AT3TE57305	.	-	ATENSPM10	En-Spm	DNA	32	tiny	81	medium	93296	pericentromeric	60237	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	13960449	13962975	AT3TE57310	.	-	ATENSPM11	En-Spm	DNA	2526	medium	47	low	93328	pericentromeric	57711	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	13960656,13963995	13960429,13960439	-,-	transcript_id-"ae90cb1e-c315-48cb-b2e3-e745fcf0223b|5",transcript_id-"e0898c88-47f8-4576-9b19-23645d361e37|3"
Chr3	13962975	13963164	AT3TE57315	.	-	ATENSPM10	En-Spm	DNA	189	short	81	medium	95854	pericentromeric	57522	no-CHH	no-RdDM	ExpressedAndAnnotated	13963995,13963982	13960439,13963004	-,-	transcript_id-"e0898c88-47f8-4576-9b19-23645d361e37|3",transcript_id-"3ea9f73c-1553-44c1-9850-0ff14f15ab5e|5"
Chr3	13964138	13964257	AT3TE57320	.	-	ATENSPM11	En-Spm	DNA	119	short	47	low	97017	pericentromeric	56429	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	13964257	13965705	AT3TE57325	.	-	ATGP10	Gypsy	LTR	1448	short	165	medium	97136	pericentromeric	54981	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	13965705	13966235	AT3TE57330	.	+	ATHILA4C	Gypsy	LTR	530	short	206	high	98584	pericentromeric	54451	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	13966235	13966348	AT3TE57335	.	+	ATHILA6B	Gypsy	LTR	113	short	134	medium	99114	pericentromeric	54338	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	13966361	13969082	AT3TE57340	.	+	ATHILA2	Gypsy	LTR	2721	medium	413	high	99240	pericentromeric	51604	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	13969086	13971711	AT3TE57345	.	+	ATHILA6A	Gypsy	LTR	2625	medium	247	high	101965	pericentromeric	48975	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	13971714	13971805	AT3TE57350	.	+	ATHILA6A	Gypsy	LTR	91	tiny	247	high	104593	pericentromeric	48881	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	13971805	13973813	AT3TE57355	.	+	ATHILA2	Gypsy	LTR	2008	medium	413	high	104684	pericentromeric	46873	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	13973823	13976103	AT3TE57360	.	+	VANDAL21	MuDR	DNA	2280	medium	64	medium	106702	pericentromeric	44583	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	13976123	13976337	AT3TE57365	.	+	ATGP1	Gypsy	LTR	214	short	144	medium	109002	pericentromeric	44349	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	13976575	13977521	AT3TE57370	.	+	ATHILA5	Gypsy	LTR	946	short	131	medium	109454	pericentromeric	43165	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	13977701	13978062	AT3TE57375	.	+	ATGP10	Gypsy	LTR	361	short	165	medium	110580	pericentromeric	42624	no-RdDM	no-CHH	.	.	.	.	.
Chr3	13978136	13978974	AT3TE57380	.	-	ATHILA4C	Gypsy	LTR	838	short	206	high	111015	pericentromeric	41712	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	13978974	13979216	AT3TE57385	.	-	LIMPET1	MuDR	DNA	242	short	116	medium	111853	pericentromeric	41470	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	13979496	13979546	AT3TE57390	.	+	ATREP18	.	DNA	50	tiny	391	high	112375	pericentromeric	41140	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13979546	13988266	AT3TE57395	.	-	ATENSPM6	En-Spm	DNA	8720	long	151	medium	112425	pericentromeric	32420	no-RdDM	no-RdDM	ExpressedAndAnnotated	13983264,13982760,13984096	13980273,13983248,13983817	-,+,-	transcript_id-"57819aca-7d16-4050-bd6a-091df7c59078|11",transcript_id-"3106bf76-9bc2-4aff-a7f2-8c41de814c6f|8",transcript_id-"5c450438-4f52-4d25-8240-674d4c6ce978|7"
Chr3	13988266	13988448	AT3TE57400	.	+	ATREP18	.	DNA	182	short	391	high	121145	pericentromeric	32238	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	13988503	13988853	AT3TE57405	.	-	ATENSPM6	En-Spm	DNA	350	short	151	medium	121382	pericentromeric	31833	no-RdDM	no-CHH	.	.	.	.	.
Chr3	13990461	13990719	AT3TE57410	.	-	ATENSPM9	En-Spm	DNA	258	short	97	medium	123340	pericentromeric	29967	no-RdDM	no-CHH	.	.	.	.	.
Chr3	13990719	13990794	AT3TE57415	.	-	ATENSPM5	En-Spm	DNA	75	tiny	111	medium	123598	pericentromeric	29892	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	13990888	13992319	AT3TE57420	.	+	ATREP18	.	DNA	1431	short	391	high	123767	pericentromeric	28367	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	13992323	13992527	AT3TE57425	.	+	ATREP11	Helitron	RC	204	short	841	high	125202	pericentromeric	28159	PolIV-and-RDR6-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	13992617	13992691	AT3TE57430	.	-	ATHILA4A	Gypsy	LTR	74	tiny	310	high	125496	pericentromeric	27995	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	13992691	13993512	AT3TE57435	.	-	ATHILA4A	Gypsy	LTR	821	short	310	high	125570	pericentromeric	27174	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	13993512	13993588	AT3TE57440	.	-	ATHILA4A	Gypsy	LTR	76	tiny	310	high	126391	pericentromeric	27098	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	13993595	14001823	AT3TE57445	.	-	ATHILA6A	Gypsy	LTR	8228	long	247	high	126474	pericentromeric	18863	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	13994749,13995552	13992582,13994637	-,-	transcript_id-"d499e881-3ba2-4647-9e3b-6717571ea9b4|6",transcript_id-"f39805d2-a982-4117-94c2-5d8542b050a8|3"
Chr3	14001823	14001849	AT3TE57450	.	-	SIMPLEGUY1	Harbinger	DNA	26	tiny	116	medium	134702	pericentromeric	18837	RDR6-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	14001849	14002678	AT3TE57455	.	-	SIMPLEHAT2	HAT	DNA	829	short	73	medium	134728	pericentromeric	18008	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14002678	14002734	AT3TE57460	.	-	SIMPLEHAT2	HAT	DNA	56	tiny	73	medium	135557	pericentromeric	17952	no-CHH	RDR6-RdDM	.	.	.	.	.
Chr3	14002793	14004575	AT3TE57465	.	-	ATHILA4A	Gypsy	LTR	1782	short	310	high	135672	pericentromeric	16111	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14004582	14006941	AT3TE57470	.	+	ATHILA6A	Gypsy	LTR	2359	medium	247	high	137461	pericentromeric	13745	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	14005353	14007783	+	transcript_id-"bacca4e6-c353-4975-afa2-5d4f623bfcb2|16"
Chr3	14008839	14008913	AT3TE57475	.	+	ATGP6	Gypsy	LTR	74	tiny	25	low	141718	pericentromeric	11773	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	14008913	14012689	AT3TE57480	.	+	ATGP7	Gypsy	LTR	3776	medium	47	low	141792	pericentromeric	7997	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	14012689	14012850	AT3TE57485	.	+	ATGP7	Gypsy	LTR	161	short	47	low	145568	pericentromeric	7836	no-RdDM	no-CHH	.	.	.	.	.
Chr3	14013949	14017694	AT3TE57490	.	+	ATHILA	Gypsy	LTR	3745	medium	198	medium	146828	pericentromeric	2992	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	14014729	14015925	AT3TE57495	.	+	ATHILA4B_LTR	Gypsy	LTR	1196	short	143	medium	147608	pericentromeric	4761	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	14017694	14019019	AT3TE57500	.	+	ATENSPM6	En-Spm	DNA	1325	short	151	medium	150573	pericentromeric	1667	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14019019	14019867	AT3TE57505	.	+	ATHILA4B_LTR	Gypsy	LTR	848	short	143	medium	151898	pericentromeric	819	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	14021956	14022048	AT3TE57510	.	+	BRODYAGA1A	MuDR	DNA	92	tiny	586	high	154835	pericentromeric	564	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14022048	14022762	AT3TE57515	.	-	BRODYAGA1A	MuDR	DNA	714	short	586	high	154927	pericentromeric	656	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14022762	14023463	AT3TE57520	.	+	ATHILA6A	Gypsy	LTR	701	short	247	high	155641	pericentromeric	1370	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	14023619	14025243	AT3TE57525	.	-	ATHILA4A	Gypsy	LTR	1624	short	310	high	156498	pericentromeric	2227	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	14024318	14023351	-	transcript_id-"06b6e81f-3c39-4960-a665-a62ce284a60e|4"
Chr3	14025246	14025267	AT3TE57530	.	-	ATHILA4D_LTR	Gypsy	LTR	22	tiny	106	medium	158124	pericentromeric	3853	.	.	.	.	.	.	.
Chr3	14025465	14025866	AT3TE57535	.	+	ATGP10	Gypsy	LTR	401	short	165	medium	158344	pericentromeric	4073	no-RdDM	no-CHH	.	.	.	.	.
Chr3	14025883	14026088	AT3TE57540	.	-	ATHILA4A	Gypsy	LTR	205	short	310	high	158762	pericentromeric	4491	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14026308	14026690	AT3TE57545	.	+	ATGP10	Gypsy	LTR	382	short	165	medium	159187	pericentromeric	4916	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14026690	14029586	AT3TE57550	.	+	ATGP2N	Gypsy	LTR	2896	medium	54	medium	159569	pericentromeric	5298	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14029586	14030071	AT3TE57555	.	+	ATGP10	Gypsy	LTR	485	short	165	medium	162465	pericentromeric	6988	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	14030071	14030819	AT3TE57560	.	-	ATGP10	Gypsy	LTR	748	short	165	medium	162950	pericentromeric	6240	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	14030821	14030276	-	transcript_id-"40c1c868-85cd-41c2-976d-dc83dc09eaea|6"
Chr3	14031135	14035158	AT3TE57565	.	+	ATGP10	Gypsy	LTR	4023	medium	165	medium	164014	pericentromeric	1901	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	14034853	14034886	AT3TE57570	.	+	ATGP10	Gypsy	LTR	33	tiny	165	medium	167732	pericentromeric	2173	no-CHH	no-CHH	.	.	.	.	.
Chr3	14035159	14036083	AT3TE57575	.	+	ATLANTYS3	Gypsy	LTR	924	short	142	medium	168038	pericentromeric	976	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	14039598	14039624	AT3TE57585	.	+	ATHILA2	Gypsy	LTR	26	tiny	413	high	172477	pericentromeric	240	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14039624	14040006	AT3TE57590	.	+	ATHILA3	Gypsy	LTR	382	short	243	high	172503	pericentromeric	266	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14040006	14040047	AT3TE57595	.	-	HELITRON2	Helitron	RC	41	tiny	194	medium	172885	pericentromeric	648	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14040047	14051435	AT3TE57600	.	-	HELITRON2	Helitron	RC	11388	long	194	medium	172926	pericentromeric	689	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	14041339	14043222	AT3TE57605	.	-	ATGP1	Gypsy	LTR	1883	short	144	medium	174218	pericentromeric	1981	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14051437	14051727	AT3TE57640	.	+	TNAT2A	.	DNA	290	short	38	low	184316	pericentromeric	12079	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14051727	14060628	AT3TE57645	.	-	VANDAL8	MuDR	DNA	8901	long	123	medium	184606	pericentromeric	12369	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	14056499,14056521	14055503,14055567	-,-	transcript_id-"1d0bfe14-8a85-4764-9c47-1dc0239d090f|11",transcript_id-"8795a0b9-b41a-47a8-9a3d-ef478272a690|3"
Chr3	14061084	14062033	AT3TE57650	.	+	TA11	L1	LINE	949	short	157	medium	193963	pericentromeric	20761	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	14062033	14072953	AT3TE57655	.	+	TA11	L1	LINE	10920	long	157	medium	194912	pericentromeric	9841	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	14064625	14067617	AT3TE57660	.	-	ATHILA2	Gypsy	LTR	2992	medium	413	high	197504	pericentromeric	15177	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	14064913	14066181	AT3TE57665	.	-	ATREP17	MuDR	DNA	1268	short	34	low	197792	pericentromeric	16613	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	14067619	14072004	AT3TE57670	.	+	ATHILA4A	Gypsy	LTR	4385	medium	310	high	200498	pericentromeric	10790	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	14072004	14072058	AT3TE57675	.	-	ATHILA2	Gypsy	LTR	54	tiny	413	high	204883	pericentromeric	10736	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	14073019	14073145	AT3TE57680	.	-	ATHILA0_I	Gypsy	LTR	126	short	138	medium	205898	pericentromeric	9649	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	14073145	14076846	AT3TE57685	.	-	ATHILA	Gypsy	LTR	3701	medium	198	medium	206024	pericentromeric	5948	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	14076846	14077500	AT3TE57690	.	-	ATHILA	Gypsy	LTR	654	short	198	medium	209725	pericentromeric	5294	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14077500	14077652	AT3TE57695	.	-	ATHILA6B	Gypsy	LTR	152	short	134	medium	210379	pericentromeric	5142	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14077652	14077783	AT3TE57700	.	-	ATHILA	Gypsy	LTR	131	short	198	medium	210531	pericentromeric	5011	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14077783	14081519	AT3TE57705	.	-	ATHILA	Gypsy	LTR	3736	medium	198	medium	210662	pericentromeric	1275	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	14081519	14081963	AT3TE57710	.	-	ATHILA	Gypsy	LTR	444	short	198	medium	214398	pericentromeric	831	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14082295	14082745	AT3TE57715	.	-	ATENSPM3	En-Spm	DNA	450	short	98	medium	215174	pericentromeric	49	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	14084237	14084561	AT3TE57720	.	-	ATENSPM7	En-Spm	DNA	324	short	74	medium	217116	pericentromeric	792	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	14095730	14097279	AT3TE57770	.	+	HELITRON1	Helitron	RC	1549	short	130	medium	228609	pericentromeric	254	PolIV-RdDM	DCL3-RdDM	ExpressedAndAnnotated	14097460	14097079	-	transcript_id-"c995625d-5f6d-429c-8d36-5fe7ad75ce36|4"
Chr3	14095972	14096114	AT3TE57775	.	-	VANDAL16	MuDR	DNA	142	short	42	low	228851	pericentromeric	496	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14097289	14111363	AT3TE57780	.	+	VANDAL7	MuDR	DNA	14074	long	36	low	230168	pericentromeric	1813	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	14099687,14102707,14108601,14108668,14108982	14097389,14104025,14108114,14108135,14108426	-,+,-,-,-	transcript_id-"9f13aedb-26cf-4b22-8113-7e086c7fc8c2|5",transcript_id-"9bf1d155-9863-437f-a83e-e3abce8ab69c|37",transcript_id-"27cb4afe-628e-4044-aa23-1121c97c23d6|3",transcript_id-"e2c9b3a8-340d-41dc-b57d-b91884246023|6",transcript_id-"4af54981-aef5-488f-85bb-fe953a7988ed|3"
Chr3	14098526	14100404	AT3TE57785	.	-	ATHILA6A	Gypsy	LTR	1878	short	247	high	231405	pericentromeric	3050	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	14099687	14097389	-	transcript_id-"9f13aedb-26cf-4b22-8113-7e086c7fc8c2|5"
Chr3	14111578	14112086	AT3TE57830	.	+	HELITRON1	Helitron	RC	508	short	130	medium	244457	pericentromeric	16102	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	14113074	14115968	AT3TE57835	.	+	ATLANTYS2	Gypsy	LTR	2894	medium	179	medium	245953	pericentromeric	17598	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14114190	14114215	AT3TE57840	.	+	ATHILA	Gypsy	LTR	25	tiny	198	medium	247069	pericentromeric	18714	no-CHH	no-CHH	.	.	.	.	.
Chr3	14114215	14115699	AT3TE57845	.	+	ATHILA	Gypsy	LTR	1484	short	198	medium	247094	pericentromeric	18739	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14115998	14116442	AT3TE57850	.	-	TAT1_ATH	Gypsy	LTR	444	short	87	medium	248877	pericentromeric	20522	no-RdDM	no-CHH	.	.	.	.	.
Chr3	14117421	14117624	AT3TE57855	.	-	ATHILA8B	Gypsy	LTR	203	short	78	medium	250300	pericentromeric	21945	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	14117624	14122624	AT3TE57860	.	-	TAT1_ATH	Gypsy	LTR	5000	long	87	medium	250503	pericentromeric	22148	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	14118139	14118215	AT3TE57865	.	+	ATHILA4	Gypsy	LTR	77	tiny	250	high	251017	pericentromeric	22662	.	.	.	.	.	.	.
Chr3	14118215	14119439	AT3TE57870	.	+	ATHILA4B_LTR	Gypsy	LTR	1224	short	143	medium	251094	pericentromeric	22739	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14119439	14119516	AT3TE57875	.	+	ATHILA4C	Gypsy	LTR	77	tiny	206	high	252318	pericentromeric	23963	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14122673	14126337	AT3TE57885	.	-	ATLANTYS1	Gypsy	LTR	3664	medium	153	medium	255552	pericentromeric	27197	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	14123195	14123592	AT3TE57890	.	-	ATLANTYS2	Gypsy	LTR	397	short	179	medium	256074	pericentromeric	27719	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14126782	14127043	AT3TE57900	.	-	ATGP10	Gypsy	LTR	261	short	165	medium	259661	pericentromeric	31306	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14127411	14127973	AT3TE57905	.	+	ATREP13	Helitron	RC	563	short	106	medium	260289	pericentromeric	31934	.	.	.	.	.	.	.
Chr3	14128146	14128212	AT3TE57910	.	-	ATHILA2	Gypsy	LTR	67	tiny	413	high	261024	pericentromeric	32669	.	.	.	.	.	.	.
Chr3	14128772	14128817	AT3TE57915	.	+	ATHILA6B	Gypsy	LTR	46	tiny	134	medium	261650	pericentromeric	33295	.	.	.	.	.	.	.
Chr3	14128819	14131599	AT3TE57920	.	+	ATHILA2	Gypsy	LTR	2781	medium	413	high	261697	pericentromeric	33342	.	.	.	.	.	.	.
Chr3	14131600	14131689	AT3TE57925	.	+	ATHILA6B	Gypsy	LTR	90	tiny	134	medium	264478	pericentromeric	36123	.	.	.	.	.	.	.
Chr3	14131690	14132041	AT3TE57930	.	+	ATHILA6B	Gypsy	LTR	352	short	134	medium	264568	pericentromeric	36213	.	.	.	.	.	.	.
Chr3	14133047	14138184	AT3TE57935	.	+	VANDAL7	MuDR	DNA	5138	long	36	low	265925	pericentromeric	37570	.	.	.	.	.	.	.
Chr3	14138244	14139567	AT3TE57940	.	-	ATHILA	Gypsy	LTR	1323	short	198	medium	271123	pericentromeric	42768	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14139568	14139592	AT3TE57945	.	-	ATHILA	Gypsy	LTR	25	tiny	198	medium	272446	pericentromeric	44091	.	.	.	.	.	.	.
Chr3	14139593	14139850	AT3TE57950	.	-	ATLANTYS2	Gypsy	LTR	258	short	179	medium	272471	pericentromeric	44116	.	.	.	.	.	.	.
Chr3	14140026	14140239	AT3TE57955	.	-	TAT1_ATH	Gypsy	LTR	214	short	87	medium	272904	pericentromeric	44549	.	.	.	.	.	.	.
Chr3	14140241	14140316	AT3TE57960	.	+	ATHILA4	Gypsy	LTR	76	tiny	250	high	273119	pericentromeric	44764	.	.	.	.	.	.	.
Chr3	14140317	14141529	AT3TE57965	.	+	ATHILA4B_LTR	Gypsy	LTR	1213	short	143	medium	273195	pericentromeric	44840	.	.	.	.	.	.	.
Chr3	14141693	14141926	AT3TE57970	.	-	ATLANTYS1	Gypsy	LTR	234	short	153	medium	274571	pericentromeric	46216	.	.	.	.	.	.	.
Chr3	14142372	14142632	AT3TE57975	.	-	ATGP10	Gypsy	LTR	261	short	165	medium	275250	pericentromeric	46895	.	.	.	.	.	.	.
Chr3	14143000	14143562	AT3TE57980	.	+	ATREP13	Helitron	RC	563	short	106	medium	275878	pericentromeric	47523	.	.	.	.	.	.	.
Chr3	14143735	14143801	AT3TE57985	.	-	ATHILA2	Gypsy	LTR	67	tiny	413	high	276613	pericentromeric	48258	.	.	.	.	.	.	.
Chr3	14144361	14144406	AT3TE57990	.	+	ATHILA6B	Gypsy	LTR	46	tiny	134	medium	277239	pericentromeric	48884	.	.	.	.	.	.	.
Chr3	14144408	14147188	AT3TE57995	.	+	ATHILA2	Gypsy	LTR	2781	medium	413	high	277286	pericentromeric	48643	.	.	ExpressedAndAnnotated	14144408	14156538	+	transcript_id-"1f0fef07-fbdd-4a55-8ddc-99ae262e3f95|3"
Chr3	14147189	14147242	AT3TE58000	.	+	ATHILA6B	Gypsy	LTR	54	tiny	134	medium	280067	pericentromeric	48589	.	.	.	.	.	.	.
Chr3	14147243	14147278	AT3TE58005	.	+	ATHILA0_I	Gypsy	LTR	36	tiny	138	medium	280121	pericentromeric	48553	.	.	.	.	.	.	.
Chr3	14147278	14151360	AT3TE58010	.	+	ATHILA6B	Gypsy	LTR	4082	medium	134	medium	280157	pericentromeric	44471	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	14151360	14151417	AT3TE58015	.	+	ATHILA6A	Gypsy	LTR	57	tiny	247	high	284239	pericentromeric	44414	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	14151419	14157497	AT3TE58020	.	+	ATHILA2	Gypsy	LTR	6078	long	413	high	284298	pericentromeric	38334	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	14144408,14155767	14156538,14156542	+,+	transcript_id-"1f0fef07-fbdd-4a55-8ddc-99ae262e3f95|3",transcript_id-"5c152c56-3597-4f9f-aa88-b167cb80094e|6"
Chr3	14157947	14158058	AT3TE58025	.	+	ATREP13	Helitron	RC	111	short	106	medium	290826	pericentromeric	37773	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14158172	14158856	AT3TE58030	.	-	ATGP10	Gypsy	LTR	684	short	165	medium	291051	pericentromeric	36975	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14159189	14159220	AT3TE58035	.	+	ATHILA2	Gypsy	LTR	31	tiny	413	high	292068	pericentromeric	36611	no-RdDM	no-CHH	.	.	.	.	.
Chr3	14159220	14159681	AT3TE58040	.	+	ATHILA2	Gypsy	LTR	461	short	413	high	292099	pericentromeric	36150	no-RdDM	no-CHH	.	.	.	.	.
Chr3	14159683	14159736	AT3TE58045	.	-	ATGP2	Gypsy	LTR	53	tiny	48	low	292562	pericentromeric	36095	no-RdDM	no-CHH	.	.	.	.	.
Chr3	14159736	14165712	AT3TE58050	.	-	ATGP2	Gypsy	LTR	5976	long	48	low	292615	pericentromeric	30119	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	14165712	14167036	AT3TE58055	.	+	ATHILA2	Gypsy	LTR	1324	short	413	high	298591	pericentromeric	28795	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	14167036	14167061	AT3TE58060	.	+	ATHILA2	Gypsy	LTR	25	tiny	413	high	299915	pericentromeric	28770	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14167161	14168770	AT3TE58065	.	+	ATHILA4	Gypsy	LTR	1609	short	250	high	300040	pericentromeric	27061	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	14168770	14168911	AT3TE58070	.	-	ATLANTYS3	Gypsy	LTR	141	short	142	medium	301649	pericentromeric	26920	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	14168911	14169865	AT3TE58075	.	+	ATHILA3	Gypsy	LTR	954	short	243	high	301790	pericentromeric	25966	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	14169885	14170229	AT3TE58080	.	+	ATHILA4	Gypsy	LTR	344	short	250	high	302764	pericentromeric	25602	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	14170250	14170698	AT3TE58085	.	-	ATLINE2	L1	LINE	448	short	138	medium	303129	pericentromeric	25133	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14170702	14172229	AT3TE58090	.	-	ATENSPM6	En-Spm	DNA	1527	short	151	medium	303581	pericentromeric	23602	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	14172242	14172305	AT3TE58095	.	+	ATDNA12T3_2	.	DNA	63	tiny	660	high	305121	pericentromeric	23526	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	14172726	14172790	AT3TE58100	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	305605	pericentromeric	23041	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14173212	14173276	AT3TE58105	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	306091	pericentromeric	22555	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14174030	14174094	AT3TE58110	.	-	ATDNA12T3_2	.	DNA	64	tiny	660	high	306909	pericentromeric	21737	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	14174533	14175084	AT3TE58115	.	-	ATDNA12T3_2	.	DNA	551	short	660	high	307412	pericentromeric	20747	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	14175527	14176096	AT3TE58120	.	-	ATDNA12T3_2	.	DNA	570	short	660	high	308405	pericentromeric	19735	.	.	LowExpressed	.	.	.	.
Chr3	14176519	14177086	AT3TE58125	.	-	ATDNA12T3_2	.	DNA	567	short	660	high	309398	pericentromeric	18745	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	14177509	14177573	AT3TE58130	.	-	ATDNA12T3_2	.	DNA	64	tiny	660	high	310388	pericentromeric	18258	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14178500	14179059	AT3TE58135	.	-	ATDNA12T3_2	.	DNA	560	short	660	high	311378	pericentromeric	16772	.	.	.	.	.	.	.
Chr3	14179497	14179560	AT3TE58140	.	-	ATDNA12T3_2	.	DNA	64	tiny	660	high	312375	pericentromeric	16271	.	.	.	.	.	.	.
Chr3	14179984	14180047	AT3TE58145	.	-	ATDNA12T3_2	.	DNA	64	tiny	660	high	312862	pericentromeric	15784	.	.	.	.	.	.	.
Chr3	14180470	14180534	AT3TE58150	.	-	ATDNA12T3_2	.	DNA	64	tiny	660	high	313349	pericentromeric	15297	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14180974	14181038	AT3TE58155	.	-	ATDNA12T3_2	.	DNA	64	tiny	660	high	313853	pericentromeric	14793	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14181461	14181525	AT3TE58160	.	-	ATDNA12T3_2	.	DNA	64	tiny	660	high	314340	pericentromeric	14306	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14181967	14182031	AT3TE58165	.	-	ATDNA12T3_2	.	DNA	64	tiny	660	high	314846	pericentromeric	13800	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14182456	14182525	AT3TE58170	.	-	ATDNA12T3_2	.	DNA	70	tiny	660	high	315334	pericentromeric	13306	.	.	.	.	.	.	.
Chr3	14182952	14183015	AT3TE58175	.	-	ATDNA12T3_2	.	DNA	64	tiny	660	high	315830	pericentromeric	12816	.	.	.	.	.	.	.
Chr3	14183453	14183516	AT3TE58180	.	-	ATDNA12T3_2	.	DNA	64	tiny	660	high	316331	pericentromeric	12315	.	.	.	.	.	.	.
Chr3	14184249	14184312	AT3TE58185	.	-	ATDNA12T3_2	.	DNA	64	tiny	660	high	317127	pericentromeric	11519	.	.	.	.	.	.	.
Chr3	14184729	14184799	AT3TE58190	.	-	ATDNA12T3_2	.	DNA	71	tiny	660	high	317607	pericentromeric	11032	.	.	.	.	.	.	.
Chr3	14185242	14185305	AT3TE58195	.	-	ATDNA12T3_2	.	DNA	64	tiny	660	high	318120	pericentromeric	10526	.	.	.	.	.	.	.
Chr3	14185739	14185811	AT3TE58200	.	-	ATDNA12T3_2	.	DNA	72	tiny	660	high	318618	pericentromeric	10020	RDR6-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	14186234	14186298	AT3TE58205	.	-	ATDNA12T3_2	.	DNA	64	tiny	660	high	319113	pericentromeric	9533	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	14186732	14186803	AT3TE58210	.	-	ATDNA12T3_2	.	DNA	72	tiny	660	high	319610	pericentromeric	9028	.	.	.	.	.	.	.
Chr3	14187226	14187290	AT3TE58215	.	-	ATDNA12T3_2	.	DNA	64	tiny	660	high	320105	pericentromeric	8541	RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14187730	14187793	AT3TE58220	.	-	ATDNA12T3_2	.	DNA	64	tiny	660	high	320608	pericentromeric	8038	.	.	.	.	.	.	.
Chr3	14188311	14188374	AT3TE58225	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	321189	pericentromeric	7457	.	.	.	.	.	.	.
Chr3	14188817	14188880	AT3TE58230	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	321695	pericentromeric	6951	.	.	.	.	.	.	.
Chr3	14189320	14189384	AT3TE58235	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	322199	pericentromeric	6447	DCL3-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	14189707	14189768	AT3TE58240	.	+	ATDNA12T3_2	.	DNA	62	tiny	660	high	322585	pericentromeric	6063	.	.	.	.	.	.	.
Chr3	14190195	14190259	AT3TE58245	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	323074	pericentromeric	5572	RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr3	14190699	14190763	AT3TE58250	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	323578	pericentromeric	5068	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14191187	14191250	AT3TE58255	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	324065	pericentromeric	4581	.	.	.	.	.	.	.
Chr3	14205306	14205378	AT3TE58310	.	+	ATDNA12T3_2	.	DNA	72	tiny	660	high	338185	pericentromeric	8842	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14205812	14205876	AT3TE58315	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	338691	pericentromeric	9348	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14206318	14206389	AT3TE58320	.	+	ATDNA12T3_2	.	DNA	71	tiny	660	high	339197	pericentromeric	9854	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	14206822	14206885	AT3TE58325	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	339700	pericentromeric	10357	.	.	.	.	.	.	.
Chr3	14207326	14207389	AT3TE58330	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	340204	pericentromeric	10861	.	.	LowExpressed	.	.	.	.
Chr3	14207830	14207894	AT3TE58335	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	340709	pericentromeric	11366	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	14208337	14208401	AT3TE58340	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	341216	pericentromeric	11873	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	14208824	14208888	AT3TE58345	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	341703	pericentromeric	12360	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14210113	14210177	AT3TE58350	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	342992	pericentromeric	13649	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	14210622	14210687	AT3TE58355	.	+	ATDNA12T3_2	.	DNA	66	tiny	660	high	343500	pericentromeric	14157	.	.	.	.	.	.	.
Chr3	14211129	14211192	AT3TE58360	.	+	ATDNA12T3_2	.	DNA	63	tiny	660	high	344008	pericentromeric	14665	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14211634	14211697	AT3TE58365	.	+	ATDNA12T3_2	.	DNA	63	tiny	660	high	344513	pericentromeric	15170	DCL3-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	14212143	14212206	AT3TE58370	.	+	ATDNA12T3_2	.	DNA	63	tiny	660	high	345022	pericentromeric	15679	PolIV-and-RDR6-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	14212651	14212715	AT3TE58375	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	345530	pericentromeric	16130	PolIV-and-RDR6-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	14213157	14213221	AT3TE58380	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	346036	pericentromeric	15624	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	14213665	14213728	AT3TE58385	.	+	ATDNA12T3_2	.	DNA	63	tiny	660	high	346544	pericentromeric	15117	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	14214173	14214244	AT3TE58390	.	+	ATDNA12T3_2	.	DNA	71	tiny	660	high	347052	pericentromeric	14601	RDR6-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	14214679	14214743	AT3TE58395	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	347558	pericentromeric	14102	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	14215187	14215250	AT3TE58400	.	+	ATDNA12T3_2	.	DNA	63	tiny	660	high	348066	pericentromeric	13595	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	14215693	14215769	AT3TE58405	.	+	ATDNA12T3_2	.	DNA	76	tiny	660	high	348572	pericentromeric	13076	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14216195	14216253	AT3TE58410	.	+	ATDNA12T3_2	.	DNA	58	tiny	660	high	349074	pericentromeric	12592	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14216702	14216773	AT3TE58415	.	+	ATDNA12T3_2	.	DNA	71	tiny	660	high	349581	pericentromeric	12072	DCL3-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	14217683	14217753	AT3TE58420	.	+	ATDNA12T3_2	.	DNA	70	tiny	660	high	350562	pericentromeric	11092	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	14218179	14218243	AT3TE58425	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	351058	pericentromeric	10602	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14218688	14218750	AT3TE58430	.	+	ATDNA12T3_2	.	DNA	63	tiny	660	high	351566	pericentromeric	10095	.	.	.	.	.	.	.
Chr3	14219194	14219257	AT3TE58435	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	352072	pericentromeric	9588	.	.	.	.	.	.	.
Chr3	14219693	14219750	AT3TE58440	.	+	ATDNA12T3_2	.	DNA	58	tiny	660	high	352571	pericentromeric	9095	.	.	LowExpressed	.	.	.	.
Chr3	14220200	14220263	AT3TE58445	.	+	ATDNA12T3_2	.	DNA	63	tiny	660	high	353079	pericentromeric	8582	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	14220708	14220766	AT3TE58450	.	+	ATDNA12T3_2	.	DNA	59	tiny	660	high	353586	pericentromeric	8079	.	.	.	.	.	.	.
Chr3	14221211	14221274	AT3TE58455	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	354089	pericentromeric	7571	.	.	.	.	.	.	.
Chr3	14221715	14221773	AT3TE58460	.	+	ATDNA12T3_2	.	DNA	58	tiny	660	high	354594	pericentromeric	7072	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14222223	14222286	AT3TE58465	.	+	ATDNA12T3_2	.	DNA	63	tiny	660	high	355102	pericentromeric	6559	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	14222731	14222790	AT3TE58470	.	+	ATDNA12T3_2	.	DNA	59	tiny	660	high	355610	pericentromeric	6055	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	14223234	14223298	AT3TE58475	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	356113	pericentromeric	5547	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	14223735	14223799	AT3TE58480	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	356614	pericentromeric	5046	PolIV-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	14224239	14224303	AT3TE58485	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	357118	pericentromeric	4542	no-CHH	no-RdDM	LowExpressed	.	.	.	.
Chr3	14224748	14224811	AT3TE58490	.	+	ATDNA12T3_2	.	DNA	63	tiny	660	high	357627	pericentromeric	4034	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14225155	14226651	AT3TE58495	.	-	ATHILA	Gypsy	LTR	1496	short	198	medium	358034	pericentromeric	2194	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	14226753	14225827	-	transcript_id-"e8b74769-a42f-43fa-8f79-40b077a1949d|4"
Chr3	14226651	14226685	AT3TE58500	.	-	ATHILA	Gypsy	LTR	34	tiny	198	medium	359530	pericentromeric	2160	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	14226685	14226726	AT3TE58505	.	-	ATHILA6A	Gypsy	LTR	41	tiny	247	high	359564	pericentromeric	2119	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	14233433	14234124	AT3TE58530	.	+	VANDAL21	MuDR	DNA	691	short	64	medium	366312	pericentromeric	1205	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14234127	14234517	AT3TE58535	.	+	ATENSPM2	En-Spm	DNA	390	short	114	medium	367006	pericentromeric	1899	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	14234517	14235020	AT3TE58540	.	-	HELITRONY1A	Helitron	RC	503	short	271	high	367396	pericentromeric	2289	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	14234587	14235416	+	transcript_id-"73a918c6-44ef-483a-8e24-abc4fd92c666|63"
Chr3	14235022	14235051	AT3TE58545	.	-	HELITRONY1B	Helitron	RC	29	tiny	414	high	367901	pericentromeric	2794	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	14236013	14236626	AT3TE58550	.	+	TAT1_ATH	Gypsy	LTR	613	short	87	medium	368892	pericentromeric	3785	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	14237148	14237573	AT3TE58555	.	+	ATLANTYS2	Gypsy	LTR	425	short	179	medium	370027	pericentromeric	4920	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	14237709	14242634	AT3TE58560	.	+	ATLANTYS1	Gypsy	LTR	4925	medium	153	medium	370588	pericentromeric	5481	no-RdDM	no-RdDM	ExpressedAndAnnotated	14239014,14239014	14240850,14240850	+,+	transcript_id-"042e8458-73a4-4841-b47a-3eb36a2f205d|6",transcript_id-"14370263-a56c-4e95-8e66-abdb7af6f440|18"
Chr3	14240634	14241210	AT3TE58565	.	+	ATENSPM11	En-Spm	DNA	576	short	47	low	373513	pericentromeric	8406	PolIV-RdDM	no-CHH	ExpressedAndAnnotated	14239014,14239014	14240850,14240850	+,+	transcript_id-"042e8458-73a4-4841-b47a-3eb36a2f205d|6",transcript_id-"14370263-a56c-4e95-8e66-abdb7af6f440|18"
Chr3	14242652	14245161	AT3TE58570	.	+	ATHILA4C	Gypsy	LTR	2509	medium	206	high	375531	pericentromeric	6438	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	14246672	14247893	AT3TE58575	.	+	ATLANTYS3	Gypsy	LTR	1221	short	142	medium	379551	pericentromeric	3706	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	14247893	14250379	AT3TE58580	.	+	ATLANTYS1	Gypsy	LTR	2486	medium	153	medium	380772	pericentromeric	1220	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	14250632	14250894	AT3TE58585	.	+	ATLANTYS2	Gypsy	LTR	262	short	179	medium	383511	pericentromeric	705	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	14250894	14251358	AT3TE58590	.	+	ATLANTYS3	Gypsy	LTR	464	short	142	medium	383773	pericentromeric	241	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	14253287	14253516	AT3TE58595	.	+	ATLANTYS3	Gypsy	LTR	229	short	142	medium	386166	pericentromeric	0	no-RdDM	no-CHH	.	.	.	.	.
Chr3	14254381	14254544	AT3TE58600	.	+	ATDNAI27T9C	MuDR	DNA	163	short	108	medium	387260	pericentromeric	112	no-RdDM	no-CHH	.	.	.	.	.
Chr3	14255660	14260360	AT3TE58605	.	+	ATHILA4C	Gypsy	LTR	4700	medium	206	high	388539	pericentromeric	1391	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	14260360	14261508	AT3TE58610	.	+	ATHILA3	Gypsy	LTR	1148	short	243	high	393239	pericentromeric	6091	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14261508	14261688	AT3TE58615	.	+	ATHILA6A	Gypsy	LTR	180	short	247	high	394387	pericentromeric	7239	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14261688	14263320	AT3TE58620	.	+	ATHILA5	Gypsy	LTR	1632	short	131	medium	394567	pericentromeric	7419	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	14263320	14263420	AT3TE58625	.	+	ATHILA5	Gypsy	LTR	100	short	131	medium	396199	pericentromeric	9051	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	14263420	14266771	AT3TE58630	.	+	ATHILA3	Gypsy	LTR	3351	medium	243	high	396299	pericentromeric	9151	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	14266781	14270211	AT3TE58635	.	-	ATENSPM10	En-Spm	DNA	3430	medium	81	medium	399660	pericentromeric	12512	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14270211	14270238	AT3TE58640	.	-	ATENSPM2	En-Spm	DNA	27	tiny	114	medium	403090	pericentromeric	15942	no-CHH	no-RdDM	.	.	.	.	.
Chr3	14270238	14271963	AT3TE58645	.	-	ATENSPM6	En-Spm	DNA	1725	short	151	medium	403117	pericentromeric	15969	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	14272594	14272907	AT3TE58650	.	+	ATREP10A	Helitron	RC	313	short	279	high	405473	pericentromeric	18325	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14272907	14285452	AT3TE58655	.	-	HELITRON5	Helitron	RC	12545	long	56	medium	405786	pericentromeric	12788	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	14273598,14273598,14273598	14274862,14274862,14274954	+,+,+	transcript_id-"293b55b7-847d-4907-a4b4-291f433a5c44|144",transcript_id-"71adb503-6074-433c-beaa-e0409442f79c|3",transcript_id-"b1cefdc3-f9bd-42eb-b3f0-59470e903d11|5"
Chr3	14285452	14286998	AT3TE58660	.	+	ATREP10B	Helitron	RC	1546	short	491	high	418331	pericentromeric	11242	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14286998	14287089	AT3TE58665	.	-	HELITRONY1E	Helitron	RC	91	tiny	447	high	419877	pericentromeric	11151	no-CHH	no-CHH	.	.	.	.	.
Chr3	14287948	14288129	AT3TE58670	.	+	ATDNA2T9A	MuDR	DNA	181	short	48	low	420827	pericentromeric	10111	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14289453	14289931	AT3TE58675	.	+	ATREP11	Helitron	RC	478	short	841	high	422332	pericentromeric	8309	no-RdDM	no-CHH	.	.	.	.	.
Chr3	14289931	14290270	AT3TE58680	.	+	ATREP5	Helitron	RC	339	short	624	high	422810	pericentromeric	7970	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14291489	14291662	AT3TE58685	.	-	TA11	L1	LINE	173	short	157	medium	424368	pericentromeric	6578	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	14291662	14293006	AT3TE58690	.	-	ATLINE1_5	L1	LINE	1344	short	91	medium	424541	pericentromeric	5234	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	14293006	14293041	AT3TE58695	.	-	ATLINE1_6	L1	LINE	35	tiny	129	medium	425885	pericentromeric	5199	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	14293261	14294316	AT3TE58700	.	-	TA11	L1	LINE	1055	short	157	medium	426140	pericentromeric	3924	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	14294385	14294413	AT3TE58705	.	+	ATHILA4	Gypsy	LTR	28	tiny	250	high	427264	pericentromeric	3827	no-RdDM	no-CHH	.	.	.	.	.
Chr3	14294413	14295696	AT3TE58710	.	+	ATHILA4A	Gypsy	LTR	1283	short	310	high	427292	pericentromeric	2544	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14295696	14295719	AT3TE58715	.	+	ATHILA4	Gypsy	LTR	23	tiny	250	high	428575	pericentromeric	2521	no-CHH	no-CHH	.	.	.	.	.
Chr3	14295719	14297040	AT3TE58720	.	+	ATHILA4A	Gypsy	LTR	1321	short	310	high	428598	pericentromeric	1200	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	14297040	14297867	AT3TE58725	.	-	ATREP8	Helitron	RC	827	short	75	medium	429919	pericentromeric	373	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14297867	14299603	AT3TE58730	.	-	ATDNAI27T9A	MuDR	DNA	1736	short	116	medium	430746	pericentromeric	0	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	14298575	14299233	AT3TE58735	.	-	LIMPET1	MuDR	DNA	658	short	116	medium	431454	pericentromeric	0	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	14299603	14299841	AT3TE58740	.	-	ATREP8	Helitron	RC	238	short	75	medium	432482	pericentromeric	720	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14299841	14302007	AT3TE58745	.	+	ATHILA4A	Gypsy	LTR	2166	medium	310	high	432720	pericentromeric	52	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	14303278	14303588	AT3TE58750	.	+	ATREP5	Helitron	RC	310	short	624	high	436157	pericentromeric	260	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	14303588	14303644	AT3TE58755	.	+	ATREP11	Helitron	RC	56	tiny	841	high	436467	pericentromeric	570	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	14304780	14305015	AT3TE58760	.	+	META1	Copia	LTR	235	short	138	medium	437659	pericentromeric	1762	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14305015	14305331	AT3TE58765	.	+	ATDNAI27T9A	MuDR	DNA	316	short	116	medium	437894	pericentromeric	1997	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	14305427	14305454	AT3TE58770	.	+	LIMPET1	MuDR	DNA	27	tiny	116	medium	438306	pericentromeric	2409	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14305454	14306244	AT3TE58775	.	+	LIMPET1	MuDR	DNA	790	short	116	medium	438333	pericentromeric	1817	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14306244	14307488	AT3TE58780	.	+	HELITRONY3	Helitron	RC	1244	short	1399	high	439123	pericentromeric	573	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14307488	14307551	AT3TE58785	.	+	ARNOLDY1	MuDR	DNA	63	tiny	237	high	440367	pericentromeric	510	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14313090	14313174	AT3TE58800	.	+	META1	Copia	LTR	84	tiny	138	medium	445969	pericentromeric	0	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14315626	14316373	AT3TE58810	.	-	ATREP4	Helitron	RC	747	short	832	high	448505	pericentromeric	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14317188	14317943	AT3TE58815	.	-	ATHAT1	HAT	DNA	755	short	105	medium	450067	pericentromeric	1554	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	14318267	14318453	AT3TE58820	.	-	ATHAT1	HAT	DNA	186	short	105	medium	451146	pericentromeric	2633	no-CHH	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	14319634	14319800	AT3TE58825	.	-	HELITRONY1B	Helitron	RC	166	short	414	high	452513	pericentromeric	2037	no-CHH	no-CHH	.	.	.	.	.
Chr3	14319800	14319826	AT3TE58830	.	-	ATREP5	Helitron	RC	26	tiny	624	high	452679	pericentromeric	2011	no-CHH	no-CHH	.	.	.	.	.
Chr3	14319826	14320766	AT3TE58835	.	+	ATREP11	Helitron	RC	940	short	841	high	452705	pericentromeric	1071	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14320766	14320788	AT3TE58840	.	+	ATREP11	Helitron	RC	22	tiny	841	high	453645	pericentromeric	1049	no-CHH	no-CHH	.	.	.	.	.
Chr3	14320788	14320851	AT3TE58845	.	+	ATREP5	Helitron	RC	63	tiny	624	high	453667	pericentromeric	986	no-CHH	no-CHH	.	.	.	.	.
Chr3	14323640	14323776	AT3TE58855	.	+	ATHAT3	HAT	DNA	136	short	23	low	456519	pericentromeric	0	no-CHH	no-CHH	ExpressedAndAnnotated	14323592	14324114	+	transcript_id-"f560bc01-1416-4fc2-b80e-53575df37076|3"
Chr3	14325568	14326312	AT3TE58860	.	-	TNAT1A	.	DNA	744	short	162	medium	458447	pericentromeric	0	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14326313	14326418	AT3TE58865	.	-	TNAT1A	.	DNA	106	short	162	medium	459191	pericentromeric	0	.	.	.	.	.	.	.
Chr3	14327319	14327919	AT3TE58870	.	-	HELITRONY1D	Helitron	RC	600	short	756	high	460198	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	14329863	14334154	AT3TE58875	.	+	ATCOPIA80	Copia	LTR	4291	medium	7	low	462742	pericentromeric	1219	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	14334965	14335303	AT3TE58880	.	+	ATCOPIA95	Copia	LTR	338	short	72	medium	467844	pericentromeric	6321	no-CHH	no-CHH	.	.	.	.	.
Chr3	14336493	14336546	AT3TE58885	.	-	ATHILA4D_LTR	Gypsy	LTR	53	tiny	106	medium	469372	pericentromeric	7849	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14336546	14336987	AT3TE58890	.	-	ATHILA4	Gypsy	LTR	441	short	250	high	469425	pericentromeric	7902	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	14336989	14352445	AT3TE58895	.	+	ATHILA0_I	Gypsy	LTR	15456	long	138	medium	469868	pericentromeric	8345	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	14348302	14350633	AT3TE58900	.	+	ATDNA12T3A	.	DNA	2331	medium	22	low	481181	pericentromeric	19658	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	14352445	14352517	AT3TE58905	.	+	ATHILA3	Gypsy	LTR	72	tiny	243	high	485324	pericentromeric	23801	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14352814	14352842	AT3TE58910	.	-	ATCOPIA49	Copia	LTR	28	tiny	34	low	485693	pericentromeric	24170	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	14352842	14353591	AT3TE58915	.	-	ATCOPIA69	Copia	LTR	749	short	25	low	485721	pericentromeric	24198	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14353591	14355335	AT3TE58920	.	-	ATCOPIA95	Copia	LTR	1744	short	72	medium	486470	pericentromeric	24947	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	14356039	14356096	AT3TE58925	.	-	ATCOPIA95	Copia	LTR	57	tiny	72	medium	488918	pericentromeric	27395	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	14356096	14359969	AT3TE58930	.	-	ATCOPIA95	Copia	LTR	3873	medium	72	medium	488975	pericentromeric	27452	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	14361402	14362039	AT3TE58935	.	+	ATGP8	Gypsy	LTR	637	short	92	medium	494281	pericentromeric	32758	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	14362154	14362618	AT3TE58940	.	-	ATCOPIA95	Copia	LTR	464	short	72	medium	495033	pericentromeric	33510	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14362670	14362697	AT3TE58945	.	+	ARNOLD1	MuDR	DNA	27	tiny	39	low	495549	pericentromeric	34026	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14362697	14362876	AT3TE58950	.	-	ATREP10D	Helitron	RC	179	short	1295	high	495576	pericentromeric	34053	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14362876	14364471	AT3TE58955	.	+	ATREP15	Helitron	RC	1595	short	1003	high	495755	pericentromeric	34232	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14365787	14378082	AT3TE58960	.	-	VANDAL10	MuDR	DNA	12295	long	13	low	498666	pericentromeric	37143	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	14378082	14378724	AT3TE58965	.	+	HELITRONY1B	Helitron	RC	642	short	414	high	510961	pericentromeric	49438	no-RdDM	no-CHH	.	.	.	.	.
Chr3	14379637	14380048	AT3TE58970	.	+	ATCOPIA95	Copia	LTR	411	short	72	medium	512516	pericentromeric	50993	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14380050	14387370	AT3TE58975	.	-	ATENSPM10	En-Spm	DNA	7320	long	81	medium	512929	pericentromeric	51406	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	14380443	14380569	AT3TE58980	.	-	ATENSPM7	En-Spm	DNA	126	short	74	medium	513322	pericentromeric	51799	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14385014	14385155	AT3TE58990	.	-	ATENSPM11	En-Spm	DNA	141	short	47	low	517893	pericentromeric	56370	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14385155	14387101	AT3TE58995	.	-	ATENSPM10	En-Spm	DNA	1946	short	81	medium	518034	pericentromeric	56511	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	14387370	14387413	AT3TE59000	.	-	ATENSPM10	En-Spm	DNA	43	tiny	81	medium	520249	pericentromeric	58726	no-RdDM	no-CHH	.	.	.	.	.
Chr3	14388172	14389883	AT3TE59005	.	+	ATCOPIA95	Copia	LTR	1711	short	72	medium	521051	pericentromeric	59528	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	14389883	14389905	AT3TE59010	.	+	ATHILA0_I	Gypsy	LTR	22	tiny	138	medium	522762	pericentromeric	61239	no-RdDM	no-CHH	.	.	.	.	.
Chr3	14389905	14395113	AT3TE59015	.	+	ATHILA3	Gypsy	LTR	5208	long	243	high	522784	pericentromeric	61261	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14393370	14393423	AT3TE59020	.	+	ATHILA3	Gypsy	LTR	53	tiny	243	high	526249	pericentromeric	64726	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14395167	14395471	AT3TE59025	.	+	ATHILA0_I	Gypsy	LTR	304	short	138	medium	528046	pericentromeric	64346	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	14395788	14395851	AT3TE59030	.	-	ARNOLD1	MuDR	DNA	63	tiny	39	low	528667	pericentromeric	63966	no-RdDM	no-CHH	.	.	.	.	.
Chr3	14395851	14395878	AT3TE59035	.	+	ARNOLDY2	MuDR	DNA	27	tiny	288	high	528730	pericentromeric	63939	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14395878	14397174	AT3TE59040	.	+	ARNOLDY2	MuDR	DNA	1296	short	288	high	528757	pericentromeric	62643	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	14397190	14398347	AT3TE59045	.	+	ATDNA12T3_2	.	DNA	1157	short	660	high	530069	pericentromeric	61470	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	14398350	14398429	AT3TE59050	.	-	ATREP11	Helitron	RC	79	tiny	841	high	531229	pericentromeric	61388	no-CHH	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	14398429	14398846	AT3TE59055	.	+	ATREP10D	Helitron	RC	417	short	1295	high	531308	pericentromeric	60971	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	14398846	14400688	AT3TE59060	.	-	ATREP1	Helitron	RC	1842	short	498	high	531725	pericentromeric	59129	no-CHH	no-CHH	.	.	.	.	.
Chr3	14400688	14401079	AT3TE59065	.	-	ATREP3	Helitron	RC	391	short	1439	high	533567	pericentromeric	58738	no-CHH	no-CHH	.	.	.	.	.
Chr3	14401079	14401172	AT3TE59070	.	+	ATCOPIA17	Copia	LTR	93	tiny	16	low	533958	pericentromeric	58645	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	14401220	14403652	AT3TE59075	.	+	ATCOPIA78	Copia	LTR	2432	medium	24	low	534099	pericentromeric	56165	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14403652	14403946	AT3TE59080	.	+	ATCOPIA78	Copia	LTR	294	short	24	low	536531	pericentromeric	55871	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	14403946	14404848	AT3TE59085	.	-	ATHILA6B	Gypsy	LTR	902	short	134	medium	536825	pericentromeric	54969	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	14404815	14404509	-	transcript_id-"9bfcb8ff-851b-4f58-9768-270e900e7a19|9"
Chr3	14405984	14406013	AT3TE59090	.	+	ROMANIAT5	Copia	LTR	29	tiny	49	low	538863	pericentromeric	53804	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14406013	14406701	AT3TE59095	.	+	ATHILA2	Gypsy	LTR	688	short	413	high	538892	pericentromeric	53116	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14406701	14416566	AT3TE59100	.	+	ATHILA2	Gypsy	LTR	9865	long	413	high	539580	pericentromeric	43251	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	14410332	14410433	+	transcript_id-"03d3bfd1-9155-4d9a-a0f8-cad9845c1764|3"
Chr3	14409643	14411463	AT3TE59105	.	+	ATHILA6A	Gypsy	LTR	1820	short	247	high	542522	pericentromeric	48354	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	14410332	14410433	+	transcript_id-"03d3bfd1-9155-4d9a-a0f8-cad9845c1764|3"
Chr3	14417949	14418084	AT3TE59130	.	+	ATREP15	Helitron	RC	135	short	1003	high	550828	pericentromeric	41733	no-CHH	no-RdDM	.	.	.	.	.
Chr3	14418084	14418973	AT3TE59135	.	+	ATREP5	Helitron	RC	889	short	624	high	550963	pericentromeric	40844	no-RdDM	no-CHH	.	.	.	.	.
Chr3	14418973	14419111	AT3TE59140	.	+	ATREP1	Helitron	RC	138	short	498	high	551852	pericentromeric	40706	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	14419637	14420107	AT3TE59145	.	-	ATHILA	Gypsy	LTR	470	short	198	medium	552516	pericentromeric	39710	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14420107	14420137	AT3TE59150	.	-	ATHILA6B	Gypsy	LTR	30	tiny	134	medium	552986	pericentromeric	39680	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14420137	14428582	AT3TE59155	.	-	ATHILA2	Gypsy	LTR	8445	long	413	high	553016	pericentromeric	31235	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	14425184	14425408	AT3TE59160	.	-	ATHILA2	Gypsy	LTR	224	short	413	high	558063	pericentromeric	34409	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14428582	14436930	AT3TE59170	.	-	ATHILA6A	Gypsy	LTR	8348	long	247	high	561461	pericentromeric	22887	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	14431522	14432354	AT3TE59175	.	-	ATHILA	Gypsy	LTR	832	short	198	medium	564401	pericentromeric	27463	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	14432567	14436563	AT3TE59180	.	+	ATHILA	Gypsy	LTR	3996	medium	198	medium	565446	pericentromeric	23254	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	14433054	14435742	AT3TE59185	.	+	ATHILA6B	Gypsy	LTR	2688	medium	134	medium	565933	pericentromeric	24075	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	14436930	14437139	AT3TE59190	.	-	ATHILA0_I	Gypsy	LTR	209	short	138	medium	569809	pericentromeric	22678	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14437140	14440153	AT3TE59195	.	-	ATHILA4C	Gypsy	LTR	3013	medium	206	high	570019	pericentromeric	19664	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14440167	14441460	AT3TE59200	.	-	ATHILA0_I	Gypsy	LTR	1293	short	138	medium	573046	pericentromeric	18357	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	14441465	14444124	AT3TE59205	.	+	ATHILA4	Gypsy	LTR	2659	medium	250	high	574344	pericentromeric	15693	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	14444125	14446639	AT3TE59210	.	+	ATHILA4A	Gypsy	LTR	2514	medium	310	high	577004	pericentromeric	13178	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	14446639	14446669	AT3TE59215	.	+	ATHILA4C	Gypsy	LTR	30	tiny	206	high	579518	pericentromeric	13148	no-CHH	no-CHH	.	.	.	.	.
Chr3	14446713	14446800	AT3TE59220	.	+	SIMPLEGUY1	Harbinger	DNA	87	tiny	116	medium	579592	pericentromeric	13017	no-CHH	no-CHH	.	.	.	.	.
Chr3	14447817	14448962	AT3TE59225	.	-	Unassigned	.	Unassigned	1145	short	.	low	580696	pericentromeric	10855	no-CHH	no-CHH	.	.	.	.	.
Chr3	14448997	14451354	AT3TE59230	.	+	ATGP1	Gypsy	LTR	2357	medium	144	medium	581876	pericentromeric	8463	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	14451360	14453088	AT3TE59235	.	-	ATHILA4C	Gypsy	LTR	1728	short	206	high	584239	pericentromeric	6729	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14453088	14454316	AT3TE59240	.	+	ATHILA4D_LTR	Gypsy	LTR	1228	short	106	medium	585967	pericentromeric	5501	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14454446	14454596	AT3TE59245	.	+	ATHILA4C	Gypsy	LTR	150	short	206	high	587325	pericentromeric	5221	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14454596	14455808	AT3TE59250	.	-	ATHILA4C	Gypsy	LTR	1212	short	206	high	587475	pericentromeric	4009	no-RdDM	no-CHH	.	.	.	.	.
Chr3	14456164	14457945	AT3TE59255	.	-	ATENSPM2	En-Spm	DNA	1781	short	114	medium	589043	pericentromeric	1872	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14458066	14459111	AT3TE59260	.	-	ATENSPM6	En-Spm	DNA	1045	short	151	medium	590945	pericentromeric	706	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14459598	14459814	AT3TE59265	.	+	HELITRONY1D	Helitron	RC	216	short	756	high	592477	pericentromeric	3	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14460546	14460935	AT3TE59270	.	-	ATHILA4C	Gypsy	LTR	389	short	206	high	593425	pericentromeric	0	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	14460935	14461056	AT3TE59275	.	-	ATHILA4C	Gypsy	LTR	121	short	206	high	593814	pericentromeric	0	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	14461058	14461661	AT3TE59280	.	-	ATHILA4C	Gypsy	LTR	603	short	206	high	593937	pericentromeric	0	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	14461995	14462123	AT3TE59285	.	+	SIMPLEGUY1	Harbinger	DNA	128	short	116	medium	594874	pericentromeric	498	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14462846	14468011	AT3TE59290	.	+	ATGP1	Gypsy	LTR	5165	long	144	medium	595725	pericentromeric	1349	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	14468490	14468541	AT3TE59295	.	-	ATDNA12T3_2	.	DNA	51	tiny	660	high	601369	pericentromeric	6993	no-RdDM	no-CHH	.	.	.	.	.
Chr3	14468997	14470633	AT3TE59300	.	-	ATENSPM2	En-Spm	DNA	1636	short	114	medium	601876	pericentromeric	7500	no-CHH	no-CHH	.	.	.	.	.
Chr3	14470633	14470679	AT3TE59305	.	-	ATENSPM2	En-Spm	DNA	46	tiny	114	medium	603512	pericentromeric	9136	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	14470711	14470802	AT3TE59310	.	-	VANDAL1N1	MuDR	DNA	91	tiny	52	medium	603590	pericentromeric	9214	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	14470812	14472074	AT3TE59315	.	-	VANDAL2N1	MuDR	DNA	1262	short	51	medium	603691	pericentromeric	9315	no-RdDM	no-CHH	.	.	.	.	.
Chr3	14471706	14471729	AT3TE59320	.	-	VANDAL2N1	MuDR	DNA	23	tiny	51	medium	604585	pericentromeric	10209	no-CHH	no-CHH	.	.	.	.	.
Chr3	14472510	14473843	AT3TE59325	.	-	ATREP4	Helitron	RC	1333	short	832	high	605389	pericentromeric	11013	no-RdDM	no-CHH	.	.	.	.	.
Chr3	14473851	14474026	AT3TE59330	.	-	HELITRONY1A	Helitron	RC	175	short	271	high	606730	pericentromeric	12354	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	14474026	14474686	AT3TE59335	.	-	ATHILA4A	Gypsy	LTR	660	short	310	high	606905	pericentromeric	12529	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	14474904	14473982	-	transcript_id-"cef57f93-62f7-4ebe-be44-dda1fa630684|3"
Chr3	14476510	14476641	AT3TE59340	.	+	ATGP10	Gypsy	LTR	131	short	165	medium	609389	pericentromeric	15013	no-RdDM	no-CHH	ExpressedAndAnnotated	14475287	14476682	+	transcript_id-"b1c7e6f8-ab6d-4b46-a4dc-6fcd1ba1033c|9"
Chr3	14476903	14476937	AT3TE59345	.	-	ATHILA4A	Gypsy	LTR	34	tiny	310	high	609782	pericentromeric	15406	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	14476937	14478349	AT3TE59350	.	-	ATHILA4A	Gypsy	LTR	1412	short	310	high	609816	pericentromeric	15440	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	14478349	14478897	AT3TE59355	.	-	ATDNA12T3A	.	DNA	548	short	22	low	611228	pericentromeric	16852	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	14478924	14482784	AT3TE59360	.	-	HELITRON2	Helitron	RC	3860	medium	194	medium	611803	pericentromeric	17427	no-RdDM	no-CHH	.	.	.	.	.
Chr3	14480010	14480811	AT3TE59365	.	-	HELITRON1	Helitron	RC	801	short	130	medium	612889	pericentromeric	18513	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14480811	14480892	AT3TE59370	.	-	HELITRON3	Helitron	RC	81	tiny	53	medium	613690	pericentromeric	19314	no-RdDM	no-CHH	.	.	.	.	.
Chr3	14481202	14481252	AT3TE59375	.	-	HELITRON5	Helitron	RC	50	tiny	56	medium	614081	pericentromeric	19705	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14483416	14483815	AT3TE59380	.	-	ATHILA4A	Gypsy	LTR	399	short	310	high	616295	pericentromeric	19794	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14483819	14485375	AT3TE59385	.	-	ATHILA2	Gypsy	LTR	1556	short	413	high	616698	pericentromeric	18234	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	14485378	14485988	AT3TE59390	.	-	ATHILA3	Gypsy	LTR	610	short	243	high	618257	pericentromeric	17621	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14485988	14486183	AT3TE59395	.	+	ATDNA12T3A	.	DNA	195	short	22	low	618867	pericentromeric	17426	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14486187	14487089	AT3TE59400	.	+	ATDNA12T3A	.	DNA	902	short	22	low	619066	pericentromeric	16520	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14487101	14487259	AT3TE59405	.	+	HELITRON5	Helitron	RC	158	short	56	medium	619980	pericentromeric	16350	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14487259	14488777	AT3TE59410	.	+	HELITRON2	Helitron	RC	1518	short	194	medium	620138	pericentromeric	14832	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14488852	14488957	AT3TE59415	.	-	ATHILA4C	Gypsy	LTR	105	short	206	high	621731	pericentromeric	14652	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14488957	14490185	AT3TE59420	.	-	ATHILA4B_LTR	Gypsy	LTR	1228	short	143	medium	621836	pericentromeric	13424	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14491437	14491507	AT3TE59425	.	-	ATHILA4B_LTR	Gypsy	LTR	70	tiny	143	medium	624316	pericentromeric	12102	no-RdDM	no-CHH	.	.	.	.	.
Chr3	14491507	14494435	AT3TE59430	.	-	ATHILA4	Gypsy	LTR	2928	medium	250	high	624386	pericentromeric	9174	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14492708	14492732	AT3TE59435	.	-	ATHILA4	Gypsy	LTR	24	tiny	250	high	625587	pericentromeric	10877	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14494435	14494479	AT3TE59440	.	-	ATHILA4	Gypsy	LTR	44	tiny	250	high	627314	pericentromeric	9130	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14494683	14494889	AT3TE59445	.	+	ATENSPM10	En-Spm	DNA	206	short	81	medium	627562	pericentromeric	8720	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	14495504	14497162	AT3TE59450	.	-	ATHILA8B	Gypsy	LTR	1658	short	78	medium	628383	pericentromeric	6447	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	14496503,14502383	14495287,14496403	-,-	transcript_id-"274157f5-3ef4-49f7-aada-ad196664a997|18",transcript_id-"107a6a25-5830-48bc-bd5b-7a8935694cf6|8"
Chr3	14497162	14497511	AT3TE59455	.	-	VANDAL3	MuDR	DNA	349	short	177	medium	630041	pericentromeric	6098	no-RdDM	no-RdDM	ExpressedAndAnnotated	14502383,14497369,14502383	14496403,14497076,14497279	-,-,-	transcript_id-"107a6a25-5830-48bc-bd5b-7a8935694cf6|8",transcript_id-"21dd4a19-b962-4c9e-9335-f54e985c4925|3",transcript_id-"786cc244-7982-4f5d-b9cc-8a03ad390397|14"
Chr3	14497594	14499694	AT3TE59460	.	+	ATHILA4A	Gypsy	LTR	2100	medium	310	high	630473	pericentromeric	3915	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	14499655	14499473	-	transcript_id-"1221af9a-67ce-4ff2-a867-e72e301511dd|4"
Chr3	14499808	14499988	AT3TE59465	.	+	ATHILA4A	Gypsy	LTR	180	short	310	high	632687	pericentromeric	3621	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	14500038	14501564	AT3TE59470	.	+	ATGP2	Gypsy	LTR	1526	short	48	low	632917	pericentromeric	2045	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	14501226	14501301	AT3TE59475	.	+	ATGP2	Gypsy	LTR	75	tiny	48	low	634105	pericentromeric	2308	PolIV-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	14503141	14513418	AT3TE59480	.	+	ATGP2	Gypsy	LTR	10277	long	48	low	636020	pericentromeric	0	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	14503467	14504214	AT3TE59485	.	+	ATGP10	Gypsy	LTR	747	short	165	medium	636346	pericentromeric	0	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	14504214	14509015	AT3TE59490	.	-	ATGP10	Gypsy	LTR	4801	medium	165	medium	637093	pericentromeric	297	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	14509015	14509255	AT3TE59495	.	-	ATGP10	Gypsy	LTR	240	short	165	medium	641894	pericentromeric	244	no-RdDM	no-CHH	.	.	.	.	.
Chr3	14510094	14511849	AT3TE59500	.	+	ATGP10	Gypsy	LTR	1755	short	165	medium	642973	pericentromeric	334	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	14513418	14513519	AT3TE59505	.	+	ATGP2	Gypsy	LTR	101	short	48	low	646297	pericentromeric	3658	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14513519	14513543	AT3TE59510	.	+	ATGP1	Gypsy	LTR	24	tiny	144	medium	646398	pericentromeric	3759	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14514026	14514596	AT3TE59515	.	+	ATHILA5	Gypsy	LTR	570	short	131	medium	646905	pericentromeric	3424	no-RdDM	no-CHH	.	.	.	.	.
Chr3	14514689	14514851	AT3TE59520	.	-	ATREP10C	Helitron	RC	162	short	123	medium	647568	pericentromeric	3169	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	14515300	14519911	AT3TE59525	.	+	VANDAL4	MuDR	DNA	4611	medium	102	medium	648179	pericentromeric	0	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	14518871	14519411	AT3TE59530	.	-	VANDAL4	MuDR	DNA	540	short	102	medium	651750	pericentromeric	404	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	14519911	14535258	AT3TE59535	.	+	HELITRON3	Helitron	RC	15347	long	53	medium	652790	pericentromeric	1444	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	14535263	14535662	AT3TE59540	.	+	VANDAL4	MuDR	DNA	399	short	102	medium	668142	pericentromeric	16796	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	14535768	14535843	AT3TE59545	.	-	ATLANTYS3	Gypsy	LTR	75	tiny	142	medium	668647	pericentromeric	17301	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	14535864	14535938	AT3TE59550	.	-	ATLANTYS3	Gypsy	LTR	74	tiny	142	medium	668743	pericentromeric	17397	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	14535980	14536666	AT3TE59555	.	-	ATLANTYS2	Gypsy	LTR	686	short	179	medium	668859	pericentromeric	17513	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	14536273	14536827	+	transcript_id-"7fd71d6c-d584-4acd-af07-5270d6ff3bba|3"
Chr3	14536876	14538151	AT3TE59560	.	-	ATGP8	Gypsy	LTR	1275	short	92	medium	669755	pericentromeric	18409	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	14538023,14538023,14538023	14536977,14537538,14537670	-,-,-	transcript_id-"95782a95-8337-4774-a473-2a4c8ebb9b7b|5",transcript_id-"d43c78d4-2798-437f-b84b-973c0cfccda0|3",transcript_id-"f254dbe5-aee8-481f-b112-eddcf7c9a572|43"
Chr3	14538557	14539029	AT3TE59565	.	-	ATLANTYS2	Gypsy	LTR	472	short	179	medium	671436	pericentromeric	20090	no-RdDM	no-CHH	.	.	.	.	.
Chr3	14541774	14542039	AT3TE59575	.	+	ATCOPIA63	Copia	LTR	265	short	11	low	674653	pericentromeric	23307	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14542045	14543957	AT3TE59580	.	+	ATHILA4A	Gypsy	LTR	1912	short	310	high	674924	pericentromeric	23578	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	14543957	14544114	AT3TE59585	.	+	ATCOPIA63	Copia	LTR	157	short	11	low	676836	pericentromeric	25490	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	14544874	14544947	AT3TE59590	.	-	ATLANTYS3	Gypsy	LTR	73	tiny	142	medium	677753	pericentromeric	26407	no-RdDM	no-CHH	.	.	.	.	.
Chr3	14544969	14545414	AT3TE59595	.	-	ATHILA2	Gypsy	LTR	445	short	413	high	677848	pericentromeric	26502	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14545419	14549333	AT3TE59600	.	+	ATHILA2	Gypsy	LTR	3914	medium	413	high	678298	pericentromeric	26952	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	14549333	14551093	AT3TE59605	.	+	ATHILA2	Gypsy	LTR	1760	short	413	high	682212	pericentromeric	30866	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	14551093	14551780	AT3TE59610	.	+	ATHILA6A	Gypsy	LTR	687	short	247	high	683972	pericentromeric	32626	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14551780	14551801	AT3TE59615	.	+	ATHILA2	Gypsy	LTR	21	tiny	413	high	684659	pericentromeric	33313	no-RdDM	no-CHH	.	.	.	.	.
Chr3	14551801	14556855	AT3TE59620	.	+	ATHILA2	Gypsy	LTR	5054	long	413	high	684680	pericentromeric	33334	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	14554053,14554053	14554208,14556063	+,+	transcript_id-"4bd91357-b672-4a9b-ae09-f000b048b421|8",transcript_id-"8cfc2ee2-4c57-4dc4-b1a3-6509f997d70f|5"
Chr3	14556857	14558690	AT3TE59625	.	-	ATHILA4	Gypsy	LTR	1833	short	250	high	689736	pericentromeric	38390	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	14559079	14559207	AT3TE59630	.	+	ATREP7	Helitron	RC	129	short	164	medium	691957	pericentromeric	40611	.	.	.	.	.	.	.
Chr3	14560276	14560463	AT3TE59635	.	+	HELITRONY1A	Helitron	RC	187	short	271	high	693155	pericentromeric	41809	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14560518	14560707	AT3TE59640	.	-	ATCOPIA95	Copia	LTR	189	short	72	medium	693397	pericentromeric	42051	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14563398	14563487	AT3TE59650	.	-	ATREP12	Helitron	RC	89	tiny	22	low	696277	pericentromeric	43655	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14563614	14563701	AT3TE59655	.	+	ATHILA4C	Gypsy	LTR	87	tiny	206	high	696493	pericentromeric	43441	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	14563701	14574067	AT3TE59660	.	+	ATHILA4C	Gypsy	LTR	10366	long	206	high	696580	pericentromeric	33075	no-RdDM	no-RdDM	ExpressedAndAnnotated	14570049	14571829	+	transcript_id-"06f437e0-8512-448c-874f-c312f0a17121|3"
Chr3	14574067	14574103	AT3TE59665	.	+	ATHILA4A	Gypsy	LTR	36	tiny	310	high	706946	pericentromeric	33039	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14574283	14576915	AT3TE59670	.	+	VANDAL5A	MuDR	DNA	2632	medium	56	medium	707162	pericentromeric	30227	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14575164	14575925	AT3TE59675	.	+	VANDAL4	MuDR	DNA	761	short	102	medium	708043	pericentromeric	31217	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14575925	14576006	AT3TE59680	.	+	VANDAL5	MuDR	DNA	81	tiny	85	medium	708804	pericentromeric	31136	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14577330	14577838	AT3TE59685	.	-	VANDAL5	MuDR	DNA	508	short	85	medium	710209	pericentromeric	29304	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14577948	14577972	AT3TE59690	.	-	ATHILA2	Gypsy	LTR	24	tiny	413	high	710827	pericentromeric	29170	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14577972	14583063	AT3TE59695	.	-	ATHILA2	Gypsy	LTR	5091	long	413	high	710851	pericentromeric	24079	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	14583063	14583637	AT3TE59700	.	-	ATHILA6A	Gypsy	LTR	574	short	247	high	715942	pericentromeric	23505	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14583637	14584085	AT3TE59705	.	-	ATHILA2	Gypsy	LTR	448	short	413	high	716516	pericentromeric	23057	no-RdDM	no-CHH	.	.	.	.	.
Chr3	14584085	14584664	AT3TE59710	.	-	VANDAL4	MuDR	DNA	579	short	102	medium	716964	pericentromeric	22478	no-RdDM	no-CHH	.	.	.	.	.
Chr3	14584664	14584691	AT3TE59715	.	+	ATREP15	Helitron	RC	27	tiny	1003	high	717543	pericentromeric	22451	RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr3	14584691	14585891	AT3TE59720	.	-	ATREP18	.	DNA	1200	short	391	high	717570	pericentromeric	21251	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14585891	14586026	AT3TE59725	.	-	ATREP18	.	DNA	135	short	391	high	718770	pericentromeric	21116	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14586321	14586573	AT3TE59730	.	+	VANDAL4	MuDR	DNA	252	short	102	medium	719200	pericentromeric	20569	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14587877	14588189	AT3TE59735	.	-	VANDAL5	MuDR	DNA	312	short	85	medium	720756	pericentromeric	18953	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	14587849	14588609	+	transcript_id-"fe5f0d4d-b12e-4c41-828d-6a5b15892dce|8"
Chr3	14588865	14589218	AT3TE59740	.	+	ATREP1	Helitron	RC	353	short	498	high	721744	pericentromeric	17924	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14590255	14591220	AT3TE59745	.	+	VANDAL4	MuDR	DNA	965	short	102	medium	723134	pericentromeric	15922	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	14592353	14592560	AT3TE59750	.	-	VANDAL5	MuDR	DNA	207	short	85	medium	725232	pericentromeric	14582	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14594859	14597338	AT3TE59755	.	+	VANDAL5	MuDR	DNA	2479	medium	85	medium	727738	pericentromeric	9804	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14597338	14597390	AT3TE59760	.	+	VANDAL5	MuDR	DNA	52	tiny	85	medium	730217	pericentromeric	9752	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	14597942	14599169	AT3TE59765	.	-	ATENSPM10	En-Spm	DNA	1227	short	81	medium	730821	pericentromeric	7973	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	14599961	14603513	AT3TE59770	.	-	ATDNA1T9A	MuDR	DNA	3552	medium	36	low	732840	pericentromeric	3629	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	14605276	14605332	AT3TE59775	.	-	ATREP5	Helitron	RC	56	tiny	624	high	738155	pericentromeric	1810	no-CHH	no-RdDM	.	.	.	.	.
Chr3	14605332	14606906	AT3TE59780	.	+	ATREP3	Helitron	RC	1574	short	1439	high	738211	pericentromeric	236	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	14606906	14607422	AT3TE59785	.	-	ATREP10D	Helitron	RC	516	short	1295	high	739785	pericentromeric	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	14607915	14607938	AT3TE59790	.	-	ATLINE1A	L1	LINE	23	tiny	289	high	740794	pericentromeric	48	no-CHH	no-CHH	.	.	.	.	.
Chr3	14607938	14608966	AT3TE59795	.	+	ATREP4	Helitron	RC	1028	short	832	high	740817	pericentromeric	71	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	14608966	14609079	AT3TE59800	.	+	HELITRONY3	Helitron	RC	113	short	1399	high	741845	pericentromeric	622	no-CHH	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	14610449	14610497	AT3TE59805	.	-	ATCOPIA49	Copia	LTR	48	tiny	34	low	743328	pericentromeric	625	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14610497	14610528	AT3TE59810	.	-	ATCOPIA49	Copia	LTR	31	tiny	34	low	743376	pericentromeric	673	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14610528	14611248	AT3TE59815	.	-	ATCOPIA65	Copia	LTR	720	short	34	low	743407	pericentromeric	704	no-RdDM	no-CHH	.	.	.	.	.
Chr3	14611248	14613046	AT3TE59820	.	-	ATCOPIA95	Copia	LTR	1798	short	72	medium	744127	pericentromeric	1424	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	14613920	14614010	AT3TE59825	.	-	ATREP10B	Helitron	RC	90	tiny	491	high	746799	pericentromeric	4096	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14614010	14614536	AT3TE59830	.	-	ATREP1	Helitron	RC	526	short	498	high	746889	pericentromeric	4186	no-CHH	no-CHH	.	.	.	.	.
Chr3	14614536	14614841	AT3TE59835	.	-	ATREP3	Helitron	RC	305	short	1439	high	747415	pericentromeric	4712	no-CHH	no-CHH	.	.	.	.	.
Chr3	14614841	14614985	AT3TE59840	.	-	RathE1_cons	.	RathE1_cons	144	short	213	high	747720	pericentromeric	5017	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14615074	14615137	AT3TE59845	.	+	HELITRONY3	Helitron	RC	63	tiny	1399	high	747953	pericentromeric	5250	no-CHH	no-RdDM	.	.	.	.	.
Chr3	14615137	14615815	AT3TE59850	.	+	HELITRONY3	Helitron	RC	678	short	1399	high	748016	pericentromeric	5313	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr3	14616101	14623209	AT3TE59855	.	+	ATCOPIA42	Copia	LTR	7108	long	35	low	748980	pericentromeric	6277	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	14623209	14623280	AT3TE59860	.	+	ATCOPIA42	Copia	LTR	71	tiny	35	low	756088	pericentromeric	13385	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	14623814	14641937	AT3TE59865	.	+	VANDAL4	MuDR	DNA	18123	long	102	medium	756693	pericentromeric	13990	no-RdDM	no-RdDM	ExpressedAndAnnotated	14633917	14634691	+	transcript_id-"f37e78eb-76e1-4bc1-8fc9-8abbb3fb066b|5"
Chr3	14641949	14642001	AT3TE59870	.	+	ARNOLD3	MuDR	DNA	52	tiny	45	low	774828	pericentromeric	23726	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14642001	14642120	AT3TE59875	.	+	BRODYAGA1	MuDR	DNA	119	short	251	high	774880	pericentromeric	23607	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14642120	14642620	AT3TE59880	.	+	ATMU10	MuDR	DNA	500	short	87	medium	774999	pericentromeric	23107	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	14642400	14642714	+	transcript_id-"d41a5993-d566-4e3f-b5c6-fc5c5beab756|8"
Chr3	14642620	14643782	AT3TE59885	.	+	ATMU9	MuDR	DNA	1162	short	16	low	775499	pericentromeric	21945	no-RdDM	no-RdDM	ExpressedAndAnnotated	14642417,14642417	14643797,14643882	+,+	transcript_id-"3ac0167f-8fb2-4400-ab58-07e05ca7f8c3|8",transcript_id-"b2adb986-28ec-4f0a-8634-1e4ed7dcb9e6|7"
Chr3	14643782	14643845	AT3TE59890	.	+	ARNOLD1	MuDR	DNA	63	tiny	39	low	776661	pericentromeric	21882	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	14643845	14647067	AT3TE59895	.	+	ATHILA8A	Gypsy	LTR	3222	medium	97	medium	776724	pericentromeric	18660	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	14644910	14646195	AT3TE59900	.	-	ATDNA12T3_2	.	DNA	1285	short	660	high	777789	pericentromeric	19532	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14646216	14646537	AT3TE59905	.	-	ATDNA12T3_2	.	DNA	321	short	660	high	779095	pericentromeric	19190	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14647067	14647460	AT3TE59910	.	+	ARNOLD3	MuDR	DNA	393	short	45	low	779946	pericentromeric	18267	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14647723	14648089	AT3TE59915	.	+	ATGP10	Gypsy	LTR	366	short	165	medium	780602	pericentromeric	17638	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	14648891	14649011	AT3TE59920	.	-	ATREP15	Helitron	RC	120	short	1003	high	781770	pericentromeric	16716	no-CHH	no-CHH	.	.	.	.	.
Chr3	14649011	14649047	AT3TE59925	.	-	HELITRONY1D	Helitron	RC	36	tiny	756	high	781890	pericentromeric	16680	no-RdDM	no-CHH	.	.	.	.	.
Chr3	14649047	14649862	AT3TE59930	.	+	BRODYAGA2	MuDR	DNA	815	short	525	high	781926	pericentromeric	15865	no-CHH	no-CHH	.	.	.	.	.
Chr3	14649862	14650169	AT3TE59935	.	-	ATREP3	Helitron	RC	307	short	1439	high	782741	pericentromeric	15558	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr3	14650451	14650510	AT3TE59940	.	+	VANDAL18NA	MuDR	DNA	59	tiny	24	low	783330	pericentromeric	15217	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14650510	14651558	AT3TE59945	.	+	VANDAL18NB	MuDR	DNA	1048	short	19	low	783389	pericentromeric	14169	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14651558	14652016	AT3TE59950	.	+	ATREP10D	Helitron	RC	458	short	1295	high	784437	pericentromeric	13711	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14652016	14652844	AT3TE59955	.	-	BRODYAGA2	MuDR	DNA	828	short	525	high	784895	pericentromeric	12883	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14652844	14653187	AT3TE59960	.	+	ATDNAI27T9A	MuDR	DNA	343	short	116	medium	785723	pericentromeric	12540	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	14653072	14653894	+	transcript_id-"b28670e7-5783-4405-8a30-8d3f8fc1c17c|5"
Chr3	14652916	14652940	AT3TE59965	.	+	VANDAL5	MuDR	DNA	25	tiny	85	medium	785794	pericentromeric	12787	.	.	.	.	.	.	.
Chr3	14653761	14654321	AT3TE59970	.	+	ATDNAI27T9B	MuDR	DNA	560	short	43	low	786640	pericentromeric	11406	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	14653072	14653894	+	transcript_id-"b28670e7-5783-4405-8a30-8d3f8fc1c17c|5"
Chr3	14654720	14655043	AT3TE59975	.	+	ATDNA1T9A	MuDR	DNA	323	short	36	low	787599	pericentromeric	10684	PolIV-and-RDR6-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	14655562	14656216	AT3TE59980	.	-	BRODYAGA2	MuDR	DNA	654	short	525	high	788441	pericentromeric	9511	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	14656778	14662773	AT3TE59985	.	+	ATLINE1_6	L1	LINE	5995	long	129	medium	789657	pericentromeric	2954	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	14657045,14659068	14656704,14656707	-,-	transcript_id-"beb425b3-8188-4250-80ff-c33c5f99658a|6",transcript_id-"2436ba85-9ab4-412a-9e48-cfcc1b09334f|3"
Chr3	14663066	14663359	AT3TE59990	.	+	ATHILA8B	Gypsy	LTR	293	short	78	medium	795945	pericentromeric	2368	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	14671140	14675856	AT3TE60020	.	+	ATCOPIA40	Copia	LTR	4716	medium	6	low	804019	pericentromeric	2005	no-RdDM	no-CHH	.	.	.	.	.
Chr3	14676581	14677720	AT3TE60025	.	-	SIMPLEGUY1	Harbinger	DNA	1139	short	116	medium	809460	pericentromeric	2544	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14678420	14679610	AT3TE60030	.	-	ATHILA4C	Gypsy	LTR	1190	short	206	high	811299	pericentromeric	654	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	14679621	14679671	AT3TE60035	.	-	ATHILA4D_LTR	Gypsy	LTR	50	tiny	106	medium	812500	pericentromeric	593	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14681749	14681846	AT3TE60040	.	+	ATREP10C	Helitron	RC	97	tiny	123	medium	814628	pericentromeric	989	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	14681846	14681868	AT3TE60045	.	+	ATREP10D	Helitron	RC	22	tiny	1295	high	814725	pericentromeric	1086	no-CHH	no-CHH	.	.	.	.	.
Chr3	14681868	14682245	AT3TE60050	.	+	ATMUNX1	MuDR	DNA	377	short	155	medium	814747	pericentromeric	805	no-CHH	no-CHH	.	.	.	.	.
Chr3	14683834	14683920	AT3TE60055	.	-	TAG1	HAT	DNA	86	tiny	28	low	816713	pericentromeric	424	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14683949	14684053	AT3TE60060	.	+	ATREP10C	Helitron	RC	104	short	123	medium	816828	pericentromeric	539	no-CHH	no-CHH	.	.	.	.	.
Chr3	14684054	14684361	AT3TE60065	.	+	ATMUNX1	MuDR	DNA	307	short	155	medium	816933	pericentromeric	644	no-RdDM	no-CHH	.	.	.	.	.
Chr3	14685003	14685320	AT3TE60070	.	-	ATCOPIA58	Copia	LTR	318	short	18	low	817881	pericentromeric	1592	.	.	.	.	.	.	.
Chr3	14685811	14686137	AT3TE60075	.	-	ATREP5	Helitron	RC	326	short	624	high	818690	pericentromeric	2401	no-RdDM	no-CHH	.	.	.	.	.
Chr3	14686137	14686181	AT3TE60080	.	-	ATREP5	Helitron	RC	44	tiny	624	high	819016	pericentromeric	2727	no-CHH	no-CHH	.	.	.	.	.
Chr3	14686181	14686958	AT3TE60085	.	-	ATREP11	Helitron	RC	777	short	841	high	819060	pericentromeric	2099	no-CHH	no-CHH	.	.	.	.	.
Chr3	14686958	14687011	AT3TE60090	.	-	ARNOLDY2	MuDR	DNA	53	tiny	288	high	819837	pericentromeric	2046	no-RdDM	no-CHH	.	.	.	.	.
Chr3	14687011	14687062	AT3TE60095	.	+	ATREP4	Helitron	RC	51	tiny	832	high	819890	pericentromeric	1995	no-CHH	no-CHH	.	.	.	.	.
Chr3	14687062	14687128	AT3TE60100	.	+	ATREP5	Helitron	RC	66	tiny	624	high	819941	pericentromeric	1929	no-RdDM	no-CHH	.	.	.	.	.
Chr3	14688071	14688720	AT3TE60105	.	-	ATDNA2T9A	MuDR	DNA	649	short	48	low	820950	pericentromeric	337	no-CHH	no-CHH	.	.	.	.	.
Chr3	14689205	14689253	AT3TE60110	.	+	HELITRONY1B	Helitron	RC	48	tiny	414	high	822084	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	14689253	14689695	AT3TE60115	.	-	BRODYAGA1A	MuDR	DNA	442	short	586	high	822132	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	14689699	14689877	AT3TE60120	.	+	HELITRONY1B	Helitron	RC	178	short	414	high	822578	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	14690316	14690343	AT3TE60125	.	-	VANDAL1N1	MuDR	DNA	27	tiny	52	medium	823195	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	14690343	14701784	AT3TE60130	.	-	VANDAL1	MuDR	DNA	11441	long	80	medium	823222	pericentromeric	0	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	14697503	14697753	AT3TE60135	.	-	VANDAL1	MuDR	DNA	250	short	80	medium	830382	pericentromeric	7156	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14701786	14702333	AT3TE60145	.	+	ATHILA3	Gypsy	LTR	547	short	243	high	834665	pericentromeric	11439	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	14702339	14703403	AT3TE60150	.	+	ATHILA3	Gypsy	LTR	1064	short	243	high	835218	pericentromeric	11992	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14704742	14705734	AT3TE60155	.	-	ATGP8	Gypsy	LTR	992	short	92	medium	837621	pericentromeric	14395	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	14705734	14707893	AT3TE60160	.	-	ATGP1	Gypsy	LTR	2159	medium	144	medium	838613	pericentromeric	12841	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	14706197	14706233	AT3TE60165	.	-	ATGP7	Gypsy	LTR	36	tiny	47	low	839076	pericentromeric	14501	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	14711556	14712270	AT3TE60180	.	+	ATHILA3	Gypsy	LTR	714	short	243	high	844435	pericentromeric	8464	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	14712270	14712480	AT3TE60185	.	+	ATHILA0_I	Gypsy	LTR	210	short	138	medium	845149	pericentromeric	8254	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	14712918	14713075	AT3TE60190	.	+	ATHILA5	Gypsy	LTR	157	short	131	medium	845797	pericentromeric	7659	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	14713075	14714535	AT3TE60195	.	+	ATHILA	Gypsy	LTR	1460	short	198	medium	845954	pericentromeric	6199	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	14714535	14717949	AT3TE60200	.	+	ATHILA3	Gypsy	LTR	3414	medium	243	high	847414	pericentromeric	2785	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	14714966	14715541	+	transcript_id-"b3ff10e4-ec2c-4942-aa82-e5f7dff2eca4|8"
Chr3	14717953	14720460	AT3TE60205	.	-	VANDAL1	MuDR	DNA	2507	medium	80	medium	850832	pericentromeric	274	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14720463	14720558	AT3TE60210	.	-	VANDAL1N1	MuDR	DNA	95	tiny	52	medium	853342	pericentromeric	176	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	14722038	14722101	AT3TE60215	.	+	ATLINE1A	L1	LINE	63	tiny	289	high	854917	pericentromeric	212	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	14730166	14730249	AT3TE60240	.	-	ATGP5	Gypsy	LTR	83	tiny	86	medium	863045	pericentromeric	2104	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	14730251	14732936	AT3TE60245	.	-	ATGP7	Gypsy	LTR	2685	medium	47	low	863130	pericentromeric	2189	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	14736408	14736568	AT3TE60255	.	+	HELITRONY3	Helitron	RC	160	short	1399	high	869287	pericentromeric	8346	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14736575	14737843	AT3TE60260	.	-	ARNOLDY2	MuDR	DNA	1268	short	288	high	869454	pericentromeric	8513	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14737843	14737947	AT3TE60265	.	-	ARNOLDY2	MuDR	DNA	104	short	288	high	870722	pericentromeric	9781	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	14737952	14738090	AT3TE60270	.	-	ATMUN1	MuDR	DNA	138	short	107	medium	870831	pericentromeric	9890	RDR6-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	14738697	14738725	AT3TE60275	.	-	ATENSPM4	En-Spm	DNA	28	tiny	50	medium	871576	pericentromeric	10635	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14738725	14741751	AT3TE60280	.	-	ATENSPM4	En-Spm	DNA	3026	medium	50	medium	871604	pericentromeric	9528	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	14742043,14742043	14739231,14739234	-,-	transcript_id-"dc61cee3-a2d1-4b9f-be3c-667d23909fd2|21",transcript_id-"e81edddf-c567-46e2-b541-953133285117|66"
Chr3	14741751	14742419	AT3TE60285	.	-	ATENSPM2	En-Spm	DNA	668	short	114	medium	874630	pericentromeric	8860	no-RdDM	no-CHH	ExpressedAndAnnotated	14742043,14742043	14739231,14739234	-,-	transcript_id-"dc61cee3-a2d1-4b9f-be3c-667d23909fd2|21",transcript_id-"e81edddf-c567-46e2-b541-953133285117|66"
Chr3	14742419	14742593	AT3TE60290	.	+	ATMU10	MuDR	DNA	174	short	87	medium	875298	pericentromeric	8686	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14742704	14746399	AT3TE60295	.	-	ATENSPM2	En-Spm	DNA	3695	medium	114	medium	875583	pericentromeric	4880	no-RdDM	no-RdDM	ExpressedAndAnnotated	14745958,14743991	14743686,14743716	-,-	transcript_id-"c844cbb6-f942-40ca-a4dc-6999560ac4dd|3",transcript_id-"977a10d7-9249-4d5c-883a-22731856db7a|4"
Chr3	14746447	14747209	AT3TE60300	.	+	Unassigned	.	Unassigned	762	short	.	low	879326	pericentromeric	4070	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14748116	14748280	AT3TE60305	.	-	ATHAT1	HAT	DNA	164	short	105	medium	880995	pericentromeric	2999	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14749399	14750294	AT3TE60310	.	-	SADHU	.	Unassigned	895	short	16	low	882278	pericentromeric	985	no-RdDM	no-RdDM	ExpressedAndAnnotated	14750321,14749964	14749251,14749396	-,-	transcript_id-"5980a223-8efb-4698-8c5e-8767b987e8a0|5",transcript_id-"b78b70b9-cd46-47bb-9f6d-7dc62e7a6260|5"
Chr3	14750485	14750642	AT3TE60315	.	-	ATHAT1	HAT	DNA	157	short	105	medium	883364	pericentromeric	637	PolIV-and-RDR6-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	14750756	14750842	AT3TE60320	.	-	HELITRONY1D	Helitron	RC	86	tiny	756	high	883635	pericentromeric	437	no-RdDM	no-CHH	.	.	.	.	.
Chr3	14762172	14762279	AT3TE60370	.	-	ATCOPIA68	Copia	LTR	107	short	43	low	895051	pericentromeric	2087	no-CHH	no-CHH	.	.	.	.	.
Chr3	14762904	14763366	AT3TE60375	.	-	ATENSPM9	En-Spm	DNA	462	short	97	medium	895783	pericentromeric	2819	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14766077	14768866	AT3TE60385	.	-	VANDAL20	MuDR	DNA	2789	medium	51	medium	898956	pericentromeric	5992	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	14766699	14766759	AT3TE60390	.	+	VANDAL20	MuDR	DNA	60	tiny	51	medium	899578	pericentromeric	6614	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	14768866	14769055	AT3TE60395	.	-	VANDAL20	MuDR	DNA	189	short	51	medium	901745	pericentromeric	8781	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	14769055	14773508	AT3TE60400	.	-	VANDAL20	MuDR	DNA	4453	medium	51	medium	901934	pericentromeric	8970	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	14773508	14773639	AT3TE60405	.	-	VANDAL20	MuDR	DNA	131	short	51	medium	906387	pericentromeric	13423	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14773639	14783116	AT3TE60410	.	-	VANDAL20	MuDR	DNA	9477	long	51	medium	906518	pericentromeric	4623	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	14780321,14782761,14782761	14777051,14780285,14780696	-,-,-	transcript_id-"e900bce6-5e49-46f1-b399-d3b0c6f1f8c3|6",transcript_id-"fcd40639-ebdc-4a26-8f79-3270e70ea439|4",transcript_id-"50c12cb1-2da4-482f-ba0f-79b1aa95280d|3"
Chr3	14785740	14787053	AT3TE60420	.	-	ATLINE2	L1	LINE	1313	short	138	medium	918619	pericentromeric	686	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	14788098	14789519	AT3TE60425	.	-	ATHILA3	Gypsy	LTR	1421	short	243	high	920977	pericentromeric	239	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	14791413,14791360,14791413	14788972,14789045,14789045	-,-,-	transcript_id-"cde6f57d-6152-4420-93ea-1f3e3e839413|5",transcript_id-"e69478c2-55d6-4654-96dd-badcef3fa7ec|5",transcript_id-"bdaa48e1-b4ed-4a4e-928b-925fbda5d110|138"
Chr3	14789521	14789998	AT3TE60430	.	-	ATGP10	Gypsy	LTR	477	short	165	medium	922400	pericentromeric	1662	no-RdDM	no-RdDM	ExpressedAndAnnotated	14791413,14791360,14791413,14791409,14791413	14788972,14789045,14789045,14789735,14789735	-,-,-,-,-	transcript_id-"cde6f57d-6152-4420-93ea-1f3e3e839413|5",transcript_id-"e69478c2-55d6-4654-96dd-badcef3fa7ec|5",transcript_id-"bdaa48e1-b4ed-4a4e-928b-925fbda5d110|138",transcript_id-"3b4f0aa3-e86b-40d8-9320-bcb809bf953d|17",transcript_id-"a86b1ef2-42b1-41ec-a728-b6f68821f1d5|14"
Chr3	14792380	14792699	AT3TE60440	.	-	ATHILA3	Gypsy	LTR	319	short	243	high	925259	pericentromeric	4521	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14792699	14792789	AT3TE60445	.	+	HELITRON1	Helitron	RC	90	tiny	130	medium	925578	pericentromeric	4840	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14793805	14793854	AT3TE60450	.	+	ATHILA	Gypsy	LTR	49	tiny	198	medium	926684	pericentromeric	5946	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	14793855	14795319	AT3TE60455	.	+	ATHILA2	Gypsy	LTR	1464	short	413	high	926734	pericentromeric	5996	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	14795319	14804954	AT3TE60460	.	+	ATHILA6A	Gypsy	LTR	9635	long	247	high	928198	pericentromeric	7460	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	14804954	14809563	AT3TE60465	.	+	ATLANTYS2	Gypsy	LTR	4609	medium	179	medium	937833	pericentromeric	17095	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	14808515	14808744	AT3TE60470	.	+	ATHILA2	Gypsy	LTR	229	short	413	high	941394	pericentromeric	20656	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14809564	14809737	AT3TE60475	.	+	ATHILA2	Gypsy	LTR	173	short	413	high	942443	pericentromeric	21705	PolIV-and-RDR6-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	14809737	14809811	AT3TE60480	.	+	ATCOPIA30	Copia	LTR	74	tiny	33	low	942616	pericentromeric	21878	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	14810295	14810501	AT3TE60485	.	+	ATHILA2	Gypsy	LTR	206	short	413	high	943174	pericentromeric	22436	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	14811706	14811750	AT3TE60490	.	+	HELITRONY1C	Helitron	RC	44	tiny	120	medium	944585	pericentromeric	23847	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	14811750	14812627	AT3TE60495	.	-	ATREP11	Helitron	RC	877	short	841	high	944629	pericentromeric	23891	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14812627	14812741	AT3TE60500	.	+	ATREP10D	Helitron	RC	114	short	1295	high	945506	pericentromeric	24768	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr3	14812924	14813275	AT3TE60505	.	+	ATCOPIA62	Copia	LTR	351	short	16	low	945803	pericentromeric	25065	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14813275	14816680	AT3TE60510	.	+	ATHILA2	Gypsy	LTR	3405	medium	413	high	946154	pericentromeric	21711	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14816680	14816795	AT3TE60515	.	+	ATHILA0_I	Gypsy	LTR	115	short	138	medium	949559	pericentromeric	21596	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14816795	14820854	AT3TE60520	.	+	ATHILA6A	Gypsy	LTR	4059	medium	247	high	949674	pericentromeric	17537	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	14820854	14827207	AT3TE60525	.	+	ATHILA2	Gypsy	LTR	6353	long	413	high	953733	pericentromeric	11184	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	14824144	14826219	+	transcript_id-"926a6864-6eba-473f-8d68-1c3d3143c82c|6"
Chr3	14827209	14827231	AT3TE60530	.	+	ATHILA2	Gypsy	LTR	22	tiny	413	high	960088	pericentromeric	11160	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14827231	14827456	AT3TE60535	.	+	ATREP10C	Helitron	RC	225	short	123	medium	960110	pericentromeric	10935	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14827505	14827605	AT3TE60540	.	+	ATENSPM6	En-Spm	DNA	100	short	151	medium	960384	pericentromeric	10786	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14827605	14827630	AT3TE60545	.	-	ATENSPM6	En-Spm	DNA	25	tiny	151	medium	960484	pericentromeric	10761	no-RdDM	no-CHH	.	.	.	.	.
Chr3	14827630	14830228	AT3TE60550	.	-	ATENSPM6	En-Spm	DNA	2598	medium	151	medium	960509	pericentromeric	8163	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	14831158,14831154	14828204,14828219	-,-	transcript_id-"01ad1d06-5525-46c2-af1e-e7dd21d594ce|55",transcript_id-"365c7f6a-6068-4551-9da1-3c5e8bf8df85|5"
Chr3	14830228	14830401	AT3TE60555	.	-	ATENSPM9	En-Spm	DNA	173	short	97	medium	963107	pericentromeric	7990	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	14830401	14836116	AT3TE60560	.	-	ATENSPM6	En-Spm	DNA	5715	long	151	medium	963280	pericentromeric	2275	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	14831158,14831154,14834789,14835653	14828204,14828219,14834384,14834388	-,-,-,-	transcript_id-"01ad1d06-5525-46c2-af1e-e7dd21d594ce|55",transcript_id-"365c7f6a-6068-4551-9da1-3c5e8bf8df85|5",transcript_id-"97e2a132-8f72-4cb7-816f-7ef52f832ec6|5",transcript_id-"650f29c0-7651-49a7-8c04-402d5913aaaa|4"
Chr3	14836116	14836215	AT3TE60565	.	-	HELITRONY1B	Helitron	RC	99	tiny	414	high	968995	pericentromeric	2176	no-CHH	no-CHH	.	.	.	.	.
Chr3	14836215	14836236	AT3TE60570	.	-	HELITRONY1C	Helitron	RC	21	tiny	120	medium	969094	pericentromeric	2155	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14836236	14837372	AT3TE60575	.	-	ATREP10D	Helitron	RC	1136	short	1295	high	969115	pericentromeric	1019	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14837372	14837427	AT3TE60580	.	-	ATREP10C	Helitron	RC	55	tiny	123	medium	970251	pericentromeric	964	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14837427	14837467	AT3TE60585	.	-	ATREP10D	Helitron	RC	40	tiny	1295	high	970306	pericentromeric	924	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14844730	14859680	AT3TE60610	.	-	VANDAL2	MuDR	DNA	14950	long	43	low	977609	pericentromeric	1040	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	14850504,14851861	14851369,14852667	+,+	transcript_id-"ade87d62-d2ab-4f02-9fca-e152bbabe442|14",transcript_id-"37ba9e70-042a-40a5-baa9-62fc29343f01|4"
Chr3	14859680	14859724	AT3TE60615	.	-	VANDAL2N1	MuDR	DNA	44	tiny	51	medium	992559	pericentromeric	7397	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14860180	14860488	AT3TE60620	.	+	VANDAL20	MuDR	DNA	308	short	51	medium	993059	pericentromeric	6633	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14860757	14860837	AT3TE60625	.	+	VANDAL20	MuDR	DNA	80	tiny	51	medium	993636	pericentromeric	6284	DCL3-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14860903	14860994	AT3TE60630	.	+	ATCOPIA34	Copia	LTR	91	tiny	16	low	993782	pericentromeric	6127	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14860994	14865364	AT3TE60635	.	+	ATCOPIA34	Copia	LTR	4370	medium	16	low	993873	pericentromeric	1757	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	14862152	14862224	AT3TE60640	.	+	ATCOPIA33	Copia	LTR	72	tiny	6	low	995031	pericentromeric	4897	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14865364	14866189	AT3TE60650	.	+	ATCOPIA34	Copia	LTR	825	short	16	low	998243	pericentromeric	932	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	14866205	14867059	AT3TE60655	.	-	ATREP15	Helitron	RC	854	short	1003	high	999084	pericentromeric	62	no-RdDM	no-CHH	.	.	.	.	.
Chr3	14866614	14866959	AT3TE60660	.	-	ATTIRX1B	.	DNA	345	short	44	low	999493	pericentromeric	162	no-RdDM	no-CHH	.	.	.	.	.
Chr3	14868687	14868796	AT3TE60665	.	-	ATMUN1	MuDR	DNA	109	short	107	medium	1001566	pericentromeric	0	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14870759	14870862	AT3TE60670	.	+	ATHATN4	HAT	DNA	103	short	56	medium	1003638	pericentromeric	350	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	14872324	14874862	AT3TE60675	.	-	ATGP3	Gypsy	LTR	2538	medium	60	medium	1005203	pericentromeric	581	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14874862	14874924	AT3TE60680	.	-	ATGP7	Gypsy	LTR	62	tiny	47	low	1007741	pericentromeric	1551	no-RdDM	no-CHH	.	.	.	.	.
Chr3	14879844	14880761	AT3TE60700	.	+	ATREP4	Helitron	RC	917	short	832	high	1012723	pericentromeric	226	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14880953	14882716	AT3TE60705	.	+	VANDAL3	MuDR	DNA	1763	short	177	medium	1013832	pericentromeric	1335	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14882191	14882259	AT3TE60710	.	+	VANDAL3	MuDR	DNA	68	tiny	177	medium	1015070	pericentromeric	2573	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	14882892	14883335	AT3TE60715	.	+	VANDAL3	MuDR	DNA	443	short	177	medium	1015771	pericentromeric	3274	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	14883335	14888715	AT3TE60720	.	+	ATCOPIA28	Copia	LTR	5380	long	81	medium	1016214	pericentromeric	3717	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14888719	14889900	AT3TE60725	.	+	ATCOPIA29	Copia	LTR	1181	short	19	low	1021598	pericentromeric	9101	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14889900	14891164	AT3TE60730	.	+	ROMANIAT5	Copia	LTR	1264	short	49	low	1022779	pericentromeric	10282	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14891164	14891409	AT3TE60735	.	-	ATREP17	MuDR	DNA	245	short	34	low	1024043	pericentromeric	11546	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14892886	14895822	AT3TE60740	.	+	VANDAL17	MuDR	DNA	2936	medium	178	medium	1025765	pericentromeric	10014	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	14894734	14894914	AT3TE60745	.	+	ATENSPM5	En-Spm	DNA	180	short	111	medium	1027613	pericentromeric	10922	no-RdDM	no-CHH	.	.	.	.	.
Chr3	14895825	14898992	AT3TE60750	.	+	ATMU3	MuDR	DNA	3167	medium	15	low	1028704	pericentromeric	6844	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	14896544	14898505	AT3TE60755	.	-	ATREP17	MuDR	DNA	1961	short	34	low	1029423	pericentromeric	7331	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	14897008	14897243	AT3TE60760	.	-	ATMU5	MuDR	DNA	235	short	24	low	1029887	pericentromeric	8593	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	14898117	14898139	AT3TE60765	.	+	ATREP17	MuDR	DNA	22	tiny	34	low	1030996	pericentromeric	7697	no-CHH	no-RdDM	.	.	.	.	.
Chr3	14899623	14899823	AT3TE60770	.	-	ATREP17	MuDR	DNA	200	short	34	low	1032502	pericentromeric	6013	no-RdDM	no-CHH	.	.	.	.	.
Chr3	14899840	14899866	AT3TE60775	.	+	ROMANIAT5	Copia	LTR	26	tiny	49	low	1032719	pericentromeric	5970	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14899866	14900746	AT3TE60780	.	+	ATCOPIA28	Copia	LTR	880	short	81	medium	1032745	pericentromeric	5090	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14901347	14901507	AT3TE60785	.	-	ATGP3	Gypsy	LTR	160	short	60	medium	1034226	pericentromeric	4329	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14901775	14901915	AT3TE60790	.	-	ATGP9B	Gypsy	LTR	140	short	27	low	1034654	pericentromeric	3921	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	14902210	14902738	AT3TE60795	.	+	HARBINGER	Harbinger	DNA	528	short	90	medium	1035089	pericentromeric	3098	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	14902738	14903786	AT3TE60800	.	-	HELITRONY1D	Helitron	RC	1048	short	756	high	1035617	pericentromeric	2050	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	14903787	14904015	AT3TE60805	.	+	ATREP10A	Helitron	RC	229	short	279	high	1036665	pericentromeric	1821	.	.	LowExpressed	.	.	.	.
Chr3	14904412	14905272	AT3TE60810	.	-	HELITRONY1C	Helitron	RC	860	short	120	medium	1037291	pericentromeric	564	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	14905272	14905311	AT3TE60815	.	-	ATREP15	Helitron	RC	39	tiny	1003	high	1038151	pericentromeric	525	no-CHH	no-CHH	.	.	.	.	.
Chr3	14907922	14908280	AT3TE60825	.	-	ATDNA12T3_2	.	DNA	358	short	660	high	1040801	pericentromeric	1060	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr3	14908680	14910261	AT3TE60830	.	+	ATLINE1_5	L1	LINE	1581	short	91	medium	1041559	pericentromeric	1818	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	14910261	14910397	AT3TE60835	.	+	HELITRONY3	Helitron	RC	136	short	1399	high	1043140	pericentromeric	3399	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14910397	14910654	AT3TE60840	.	+	ATTIR16T3A	.	DNA	257	short	106	medium	1043276	pericentromeric	3535	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14910926	14913451	AT3TE60845	.	+	VANDAL18NB	MuDR	DNA	2525	medium	19	low	1043805	pericentromeric	4064	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14912014	14912045	AT3TE60850	.	-	ATREP4	Helitron	RC	31	tiny	832	high	1044893	pericentromeric	5152	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14912045	14912143	AT3TE60855	.	-	ATREP3	Helitron	RC	98	tiny	1439	high	1044924	pericentromeric	5183	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	14912143	14913339	AT3TE60860	.	-	ATREP18	.	DNA	1196	short	391	high	1045022	pericentromeric	5281	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14913477	14916938	AT3TE60865	.	+	VANDAL12	MuDR	DNA	3461	medium	37	low	1046356	pericentromeric	6615	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	14916938	14918972	AT3TE60870	.	+	ATGP8	Gypsy	LTR	2034	medium	92	medium	1049817	pericentromeric	10076	PolIV-and-RDR6-RdDM	no-RdDM	ExpressedAndAnnotated	14917040,14917040,14917040,14917040,14917040,14917041	14918514,14918633,14918633,14918671,14918671,14918406	+,+,+,+,+,+	transcript_id-"1db42375-b723-4eed-83d2-5ec95af8c548|5",transcript_id-"38fc7221-2e11-4587-8a5f-1652b3b96a45|10",transcript_id-"3c163913-3c27-4d12-b576-15dd6f4243df|7",transcript_id-"0ddaa639-4f3c-4d23-a2bc-476778d59f50|23",transcript_id-"ba0604fb-76a2-4488-aeb7-796a879c4cef|11",transcript_id-"bd0fd1e7-f63d-40a0-b14e-be699ebed949|14"
Chr3	14918972	14927509	AT3TE60875	.	+	VANDAL12	MuDR	DNA	8537	long	37	low	1051851	pericentromeric	2204	no-RdDM	no-RdDM	ExpressedAndAnnotated	14919570,14927224	14920292,14923139	+,-	transcript_id-"94db9cb0-1af8-409a-b5fe-eb9d367e80b4|3",transcript_id-"f96bb626-5ca0-4e55-a26a-1b870fae4ee0|3"
Chr3	14927741	14928023	AT3TE60880	.	-	ATDNA2T9B	MuDR	DNA	282	short	26	low	1060620	pericentromeric	1690	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14928061	14928564	AT3TE60885	.	+	ATLANTYS3	Gypsy	LTR	503	short	142	medium	1060940	pericentromeric	1149	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	14928564	14929349	AT3TE60890	.	-	HELITRONY1D	Helitron	RC	785	short	756	high	1061443	pericentromeric	364	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14930676	14930842	AT3TE60895	.	-	ATREP3	Helitron	RC	166	short	1439	high	1063555	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	14930842	14931896	AT3TE60900	.	+	HELITRONY3	Helitron	RC	1054	short	1399	high	1063721	pericentromeric	164	no-CHH	no-CHH	.	.	.	.	.
Chr3	14931949	14932252	AT3TE60905	.	+	Unassigned	.	Unassigned	303	short	.	low	1064828	pericentromeric	1271	no-CHH	no-CHH	.	.	.	.	.
Chr3	14932471	14933060	AT3TE60910	.	-	ATLANTYS3	Gypsy	LTR	589	short	142	medium	1065350	pericentromeric	1793	no-RdDM	no-CHH	.	.	.	.	.
Chr3	14933060	14935396	AT3TE60915	.	-	ATGP3	Gypsy	LTR	2336	medium	60	medium	1065939	pericentromeric	2382	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	14935436	14936238	AT3TE60920	.	+	ATCOPIA75	Copia	LTR	802	short	20	low	1068315	pericentromeric	3875	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	14936238	14938871	AT3TE60925	.	+	ATCOPIA13	Copia	LTR	2633	medium	35	low	1069117	pericentromeric	1242	no-RdDM	no-CHH	.	.	.	.	.
Chr3	14939500	14939686	AT3TE60930	.	-	RathE1_cons	.	RathE1_cons	186	short	213	high	1072379	pericentromeric	427	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14945706	14945768	AT3TE60960	.	-	ATLINE1A	L1	LINE	62	tiny	289	high	1078585	pericentromeric	415	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14945769	14945942	AT3TE60965	.	-	ATLINE1A	L1	LINE	174	short	289	high	1078647	pericentromeric	477	.	.	.	.	.	.	.
Chr3	14948401	14949117	AT3TE60975	.	+	ATREP11	Helitron	RC	716	short	841	high	1081280	pericentromeric	304	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14952341	14953170	AT3TE60985	.	-	ATREP10D	Helitron	RC	829	short	1295	high	1085220	pericentromeric	1062	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14953170	14953312	AT3TE60990	.	+	ATREP3	Helitron	RC	142	short	1439	high	1086049	pericentromeric	1274	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14956983	14962258	AT3TE61000	.	-	META1	Copia	LTR	5275	long	138	medium	1089862	pericentromeric	406	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	14963087	14963277	AT3TE61005	.	-	ATLINEIII	L1	LINE	190	short	196	medium	1095966	pericentromeric	6510	no-RdDM	no-CHH	.	.	.	.	.
Chr3	14963292	14968964	AT3TE61010	.	+	ATLINE2	L1	LINE	5672	long	138	medium	1096171	pericentromeric	6715	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14963758	14965790	AT3TE61015	.	+	ATCOPIA65	Copia	LTR	2032	medium	34	low	1096637	pericentromeric	7181	no-RdDM	no-CHH	.	.	.	.	.
Chr3	14965790	14967005	AT3TE61020	.	+	ATCOPIA35	Copia	LTR	1215	short	22	low	1098669	pericentromeric	9213	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	14969190	14970617	AT3TE61025	.	+	VANDAL9	MuDR	DNA	1427	short	43	low	1102069	pericentromeric	12613	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14970617	14971607	AT3TE61030	.	+	VANDAL12	MuDR	DNA	990	short	37	low	1103496	pericentromeric	14040	no-RdDM	no-CHH	.	.	.	.	.
Chr3	14971685	14975169	AT3TE61035	.	+	VANDAL11	MuDR	DNA	3484	medium	18	low	1104564	pericentromeric	15108	no-RdDM	no-CHH	.	.	.	.	.
Chr3	14975169	14975270	AT3TE61040	.	+	VANDAL10	MuDR	DNA	101	short	13	low	1108048	pericentromeric	18592	no-RdDM	no-CHH	.	.	.	.	.
Chr3	14976989	14977890	AT3TE61045	.	+	VANDAL12	MuDR	DNA	901	short	37	low	1109868	pericentromeric	20412	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	14977890	14983049	AT3TE61050	.	+	ATHILA3	Gypsy	LTR	5159	long	243	high	1110769	pericentromeric	21313	no-RdDM	no-RdDM	ExpressedAndAnnotated	14978056	14978606	+	transcript_id-"22051629-5318-4f8d-b1e5-7abec9e73379|5"
Chr3	14983056	14983090	AT3TE61055	.	+	ATHILA0_I	Gypsy	LTR	34	tiny	138	medium	1115935	pericentromeric	23522	PolIV-and-RDR6-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	14983090	14983293	AT3TE61060	.	+	ATHILA0_I	Gypsy	LTR	203	short	138	medium	1115969	pericentromeric	23319	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	14983696	14984905	AT3TE61065	.	+	ATHILA5	Gypsy	LTR	1209	short	131	medium	1116575	pericentromeric	21707	no-RdDM	no-RdDM	ExpressedAndAnnotated	14983245	14986015	+	transcript_id-"4e372835-ee39-41d4-81f7-d93b0eeafa9e|7"
Chr3	14984905	14985205	AT3TE61070	.	+	ATHILA5	Gypsy	LTR	300	short	131	medium	1117784	pericentromeric	21407	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	14985205	14986928	AT3TE61075	.	+	ATHILA0_I	Gypsy	LTR	1723	short	138	medium	1118084	pericentromeric	19684	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	14986928	14986972	AT3TE61080	.	+	VANDAL9	MuDR	DNA	44	tiny	43	low	1119807	pericentromeric	19640	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	14986972	14987436	AT3TE61085	.	+	VANDAL9	MuDR	DNA	464	short	43	low	1119851	pericentromeric	19176	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	14987808	14987840	AT3TE61090	.	-	ATREP15	Helitron	RC	32	tiny	1003	high	1120687	pericentromeric	18772	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	14987840	14987888	AT3TE61095	.	+	ATREP15	Helitron	RC	48	tiny	1003	high	1120719	pericentromeric	18724	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	14987888	14989286	AT3TE61100	.	+	HELITRONY1E	Helitron	RC	1398	short	447	high	1120767	pericentromeric	17326	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14989286	14989309	AT3TE61105	.	+	BRODYAGA2	MuDR	DNA	23	tiny	525	high	1122165	pericentromeric	17303	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14989309	14989339	AT3TE61110	.	+	ATREP6	Helitron	RC	30	tiny	181	medium	1122188	pericentromeric	17273	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14989441	14989487	AT3TE61115	.	+	ATREP10D	Helitron	RC	46	tiny	1295	high	1122320	pericentromeric	17125	no-RdDM	no-CHH	.	.	.	.	.
Chr3	14989499	14990496	AT3TE61120	.	+	VANDAL1	MuDR	DNA	997	short	80	medium	1122378	pericentromeric	16116	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	14991732	14992013	AT3TE61125	.	-	BRODYAGA1A	MuDR	DNA	281	short	586	high	1124611	pericentromeric	14599	no-CHH	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	14992960	14993169	AT3TE61130	.	-	BRODYAGA1A	MuDR	DNA	209	short	586	high	1125839	pericentromeric	13443	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	14993510	14994479	AT3TE61135	.	-	ATRE1	Copia	LTR	969	short	22	low	1126389	pericentromeric	12133	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	14996589	14996747	AT3TE61140	.	+	ATGP10	Gypsy	LTR	158	short	165	medium	1129468	pericentromeric	9865	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	14996747	15002204	AT3TE61145	.	+	ATGP3	Gypsy	LTR	5457	long	60	medium	1129626	pericentromeric	4408	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	14997442	14997477	AT3TE61150	.	-	ATENSPM6	En-Spm	DNA	35	tiny	151	medium	1130321	pericentromeric	9135	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr3	14997477	14997990	AT3TE61155	.	-	ATENSPM6	En-Spm	DNA	513	short	151	medium	1130356	pericentromeric	8622	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	14997990	15000981	AT3TE61160	.	-	ATENSPM9	En-Spm	DNA	2991	medium	97	medium	1130869	pericentromeric	5631	no-RdDM	no-RdDM	ExpressedAndAnnotated	15000989	14997868	-	transcript_id-"7b801560-53b6-4f7b-93c5-e9dd86e4ce28|3"
Chr3	15000981	15001501	AT3TE61165	.	-	HELITRONY1D	Helitron	RC	520	short	756	high	1133860	pericentromeric	5111	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	15001519	15001710	AT3TE61170	.	-	ATENSPM9	En-Spm	DNA	191	short	97	medium	1134398	pericentromeric	4902	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	15002510	15003066	AT3TE61175	.	-	ATHILA4B_LTR	Gypsy	LTR	556	short	143	medium	1135389	pericentromeric	3546	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	15003066	15004901	AT3TE61180	.	-	ATHILA4A	Gypsy	LTR	1835	short	310	high	1135945	pericentromeric	1711	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	15004901	15005063	AT3TE61185	.	-	ATHILA4	Gypsy	LTR	162	short	250	high	1137780	pericentromeric	1549	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	15005071	15005150	AT3TE61190	.	+	ATLANTYS1	Gypsy	LTR	79	tiny	153	medium	1137950	pericentromeric	1462	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	15005150	15005459	AT3TE61195	.	-	ATHILA4B_LTR	Gypsy	LTR	309	short	143	medium	1138029	pericentromeric	1153	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	15007225	15009647	AT3TE61200	.	-	ATREP10D	Helitron	RC	2422	medium	1295	high	1140104	pericentromeric	31	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	15009647	15014979	AT3TE61205	.	+	VANDAL15	MuDR	DNA	5332	long	6	low	1142526	pericentromeric	403	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	15020621	15020815	AT3TE61220	.	+	ATREP4	Helitron	RC	194	short	832	high	1153500	pericentromeric	965	no-RdDM	no-CHH	.	.	.	.	.
Chr3	15020815	15021924	AT3TE61225	.	+	ATREP11	Helitron	RC	1109	short	841	high	1153694	pericentromeric	1159	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15021924	15022131	AT3TE61230	.	+	ATREP3	Helitron	RC	207	short	1439	high	1154803	pericentromeric	2268	no-CHH	no-CHH	.	.	.	.	.
Chr3	15023222	15023343	AT3TE61235	.	+	VANDAL1	MuDR	DNA	121	short	80	medium	1156101	pericentromeric	1463	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15023343	15024153	AT3TE61240	.	-	META1	Copia	LTR	810	short	138	medium	1156222	pericentromeric	653	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	15024153	15024608	AT3TE61245	.	+	ATREP3	Helitron	RC	455	short	1439	high	1157032	pericentromeric	198	no-RdDM	no-CHH	.	.	.	.	.
Chr3	15025820	15025893	AT3TE61250	.	+	HELITRONY3	Helitron	RC	73	tiny	1399	high	1158699	pericentromeric	676	no-RdDM	no-CHH	.	.	.	.	.
Chr3	15025893	15025915	AT3TE61255	.	-	ATREP11	Helitron	RC	22	tiny	841	high	1158772	pericentromeric	749	no-CHH	no-CHH	.	.	.	.	.
Chr3	15025915	15026728	AT3TE61260	.	+	HELITRONY1B	Helitron	RC	813	short	414	high	1158794	pericentromeric	771	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	15026729	15026909	AT3TE61265	.	-	HELITRONY1E	Helitron	RC	181	short	447	high	1159607	pericentromeric	1584	.	.	.	.	.	.	.
Chr3	15026909	15027940	AT3TE61270	.	+	HELITRON3	Helitron	RC	1031	short	53	medium	1159788	pericentromeric	1765	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	15027940	15028141	AT3TE61275	.	+	HELITRON3	Helitron	RC	201	short	53	medium	1160819	pericentromeric	2212	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	15028141	15029205	AT3TE61280	.	+	HELITRON3	Helitron	RC	1064	short	53	medium	1161020	pericentromeric	1148	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	15030759	15030848	AT3TE61285	.	+	ATLANTYS2	Gypsy	LTR	89	tiny	179	medium	1163638	pericentromeric	0	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	15030848	15048140	AT3TE61290	.	+	ATLANTYS2	Gypsy	LTR	17292	long	179	medium	1163727	pericentromeric	0	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	15037638	15042230	AT3TE61295	.	+	ATGP2	Gypsy	LTR	4592	medium	48	low	1170517	pericentromeric	6486	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	15042231	15042343	AT3TE61300	.	+	ATGP2	Gypsy	LTR	113	short	48	low	1175109	pericentromeric	11078	.	.	.	.	.	.	.
Chr3	15042343	15044568	AT3TE61305	.	+	ATGP2	Gypsy	LTR	2225	medium	48	low	1175222	pericentromeric	11191	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	15048291	15049170	AT3TE61315	.	+	VANDAL3	MuDR	DNA	879	short	177	medium	1181170	pericentromeric	17139	no-RdDM	no-CHH	.	.	.	.	.
Chr3	15049170	15049212	AT3TE61320	.	-	ATREP10D	Helitron	RC	42	tiny	1295	high	1182049	pericentromeric	18018	no-CHH	no-CHH	.	.	.	.	.
Chr3	15049212	15050746	AT3TE61325	.	+	ATREP15	Helitron	RC	1534	short	1003	high	1182091	pericentromeric	18060	no-CHH	no-CHH	.	.	.	.	.
Chr3	15050747	15050897	AT3TE61330	.	-	ATDNA2T9A	MuDR	DNA	150	short	48	low	1183626	pericentromeric	19595	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15050898	15057899	AT3TE61335	.	-	VANDAL4	MuDR	DNA	7001	long	102	medium	1183777	pericentromeric	17940	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	15052144	15052181	AT3TE61340	.	-	VANDAL4	MuDR	DNA	37	tiny	102	medium	1185023	pericentromeric	20992	no-RdDM	no-CHH	.	.	.	.	.
Chr3	15058139	15058218	AT3TE61370	.	-	LIMPET1	MuDR	DNA	79	tiny	116	medium	1191018	pericentromeric	17621	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	15058218	15061860	AT3TE61375	.	-	VANDAL4	MuDR	DNA	3642	medium	102	medium	1191097	pericentromeric	13979	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	15061860	15061964	AT3TE61380	.	-	VANDAL4	MuDR	DNA	104	short	102	medium	1194739	pericentromeric	13875	no-CHH	no-CHH	.	.	.	.	.
Chr3	15062422	15064823	AT3TE61385	.	+	VANDAL17	MuDR	DNA	2401	medium	178	medium	1195301	pericentromeric	11016	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	15064823	15064956	AT3TE61390	.	+	VANDAL7	MuDR	DNA	133	short	36	low	1197702	pericentromeric	10883	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr3	15065526	15065684	AT3TE61395	.	+	ATENSPM1A	En-Spm	DNA	158	short	77	medium	1198405	pericentromeric	10155	RDR6-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	15065684	15066138	AT3TE61400	.	-	ATMU10	MuDR	DNA	454	short	87	medium	1198563	pericentromeric	9701	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	15066254	15066392	AT3TE61405	.	+	VANDAL7	MuDR	DNA	138	short	36	low	1199133	pericentromeric	9447	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	15066392	15067526	AT3TE61410	.	+	VANDAL6	MuDR	DNA	1134	short	89	medium	1199271	pericentromeric	8313	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	15067528	15067618	AT3TE61415	.	+	VANDAL8	MuDR	DNA	90	tiny	123	medium	1200407	pericentromeric	8221	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	15068416	15075549	AT3TE61420	.	-	VANDAL4	MuDR	DNA	7133	long	102	medium	1201295	pericentromeric	290	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	15075642	15076479	AT3TE61425	.	-	ATREP10D	Helitron	RC	837	short	1295	high	1208521	pericentromeric	0	no-CHH	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	15076479	15076693	AT3TE61430	.	-	BRODYAGA2	MuDR	DNA	214	short	525	high	1209358	pericentromeric	0	no-RdDM	no-CHH	.	.	.	.	.
Chr3	15076693	15076803	AT3TE61435	.	-	HELITRONY2	Helitron	RC	110	short	198	medium	1209572	pericentromeric	0	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	15081072	15081510	AT3TE61445	.	-	ATGP8	Gypsy	LTR	438	short	92	medium	1213951	pericentromeric	3851	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	15082759	15082815	AT3TE61450	.	-	ATGP8	Gypsy	LTR	56	tiny	92	medium	1215638	pericentromeric	5538	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	15083052	15084931	AT3TE61455	.	-	ATGP8	Gypsy	LTR	1879	short	92	medium	1215931	pericentromeric	5831	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	15086301	15086369	AT3TE61460	.	+	HELITRONY3	Helitron	RC	68	tiny	1399	high	1219180	pericentromeric	5340	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	15086369	15086894	AT3TE61465	.	-	HELITRONY3	Helitron	RC	525	short	1399	high	1219248	pericentromeric	4815	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15086895	15086980	AT3TE61470	.	+	BRODYAGA1	MuDR	DNA	86	tiny	251	high	1219773	pericentromeric	4729	.	.	.	.	.	.	.
Chr3	15087299	15088516	AT3TE61475	.	-	ATLINE1_5	L1	LINE	1217	short	91	medium	1220178	pericentromeric	3193	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	15088727	15091508	AT3TE61480	.	+	HELITRON2	Helitron	RC	2781	medium	194	medium	1221606	pericentromeric	201	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	15091508	15091684	AT3TE61485	.	+	HELITRON2	Helitron	RC	176	short	194	medium	1224387	pericentromeric	25	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	15095700	15095727	AT3TE61495	.	-	HELITRONY1C	Helitron	RC	27	tiny	120	medium	1228579	pericentromeric	388	no-CHH	no-CHH	.	.	.	.	.
Chr3	15095727	15096173	AT3TE61500	.	-	HELITRONY1A	Helitron	RC	446	short	271	high	1228606	pericentromeric	415	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	15098273	15098791	AT3TE61505	.	-	ATLINE1_1	L1	LINE	518	short	61	medium	1231152	pericentromeric	2961	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	15098792	15099111	AT3TE61510	.	-	ATHILA3	Gypsy	LTR	319	short	243	high	1231671	pericentromeric	3480	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	15099111	15099957	AT3TE61515	.	-	ATHILA0_I	Gypsy	LTR	846	short	138	medium	1231990	pericentromeric	3799	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	15099957	15104977	AT3TE61520	.	+	ATENSPM2	En-Spm	DNA	5020	long	114	medium	1232836	pericentromeric	4645	no-RdDM	no-RdDM	ExpressedAndAnnotated	15100420,15100422,15100422,15104657	15100760,15100827,15100942,15107647	+,+,+,+	transcript_id-"9c8a5bfe-5c8a-4800-ad90-9f2188320c6b|6",transcript_id-"5cd310f5-d1be-46b0-b77e-40c7c6fd2485|4",transcript_id-"d3a13a97-770b-4ab5-8466-f172f00a85ee|4",transcript_id-"4f43d5b3-f6ab-446c-8063-7e4357f9f613|3"
Chr3	15104977	15108146	AT3TE61525	.	+	ATENSPM4	En-Spm	DNA	3169	medium	50	medium	1237856	pericentromeric	9665	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	15104657,15105415,15106149	15107647,15107663,15107605	+,+,+	transcript_id-"4f43d5b3-f6ab-446c-8063-7e4357f9f613|3",transcript_id-"c9d338fd-24f3-4355-855c-7e4bafbc3a24|7",transcript_id-"73ffd0dc-d0c7-4381-86af-721034c6c2a5|3"
Chr3	15108165	15117493	AT3TE61530	.	-	ATHILA3	Gypsy	LTR	9328	long	243	high	1241044	pericentromeric	12853	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	15117493	15128927	AT3TE61535	.	-	ATHILA0_I	Gypsy	LTR	11434	long	138	medium	1250372	pericentromeric	11067	no-RdDM	no-RdDM	ExpressedAndAnnotated	15123717	15122558	-	transcript_id-"a52ed249-e469-4ebd-8940-cd4bda5baf5a|8"
Chr3	15117514	15117896	AT3TE61540	.	-	ATHILA3	Gypsy	LTR	382	short	243	high	1250393	pericentromeric	22098	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	15117896	15118019	AT3TE61545	.	-	ATHILA3	Gypsy	LTR	123	short	243	high	1250775	pericentromeric	21975	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	15118030	15118449	AT3TE61550	.	-	ATHILA3	Gypsy	LTR	419	short	243	high	1250909	pericentromeric	21545	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	15118895	15123388	AT3TE61555	.	-	ATHILA6A	Gypsy	LTR	4493	medium	247	high	1251774	pericentromeric	16606	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	15128927	15129087	AT3TE61570	.	-	ATHILA0_I	Gypsy	LTR	160	short	138	medium	1261806	chromoarm	10907	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	15129087	15129132	AT3TE61575	.	-	ATHILA3	Gypsy	LTR	45	tiny	243	high	1261966	chromoarm	10862	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	15129132	15129256	AT3TE61580	.	+	ATLANTYS3	Gypsy	LTR	124	short	142	medium	1262011	chromoarm	10738	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	15129256	15131988	AT3TE61585	.	+	ATHILA4C	Gypsy	LTR	2732	medium	206	high	1262135	chromoarm	8006	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	15129712	15130875	AT3TE61590	.	+	ATHILA4D_LTR	Gypsy	LTR	1163	short	106	medium	1262591	chromoarm	9119	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	15133395	15136287	AT3TE61600	.	+	VANDAL20	MuDR	DNA	2892	medium	51	medium	1266274	chromoarm	3707	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	15136287	15136331	AT3TE61605	.	+	ATHILA	Gypsy	LTR	44	tiny	198	medium	1269166	chromoarm	3663	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	15136331	15137461	AT3TE61610	.	+	ATHILA	Gypsy	LTR	1130	short	198	medium	1269210	chromoarm	2533	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	15137461	15139537	AT3TE61615	.	+	ATHILA2	Gypsy	LTR	2076	medium	413	high	1270340	chromoarm	457	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	15145227	15146389	AT3TE61630	.	-	ATLANTYS2	Gypsy	LTR	1162	short	179	medium	1278106	chromoarm	882	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	15146389	15146570	AT3TE61635	.	-	ATLANTYS1	Gypsy	LTR	181	short	153	medium	1279268	chromoarm	2044	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	15147242	15154026	AT3TE61640	.	+	ATHILA2	Gypsy	LTR	6784	long	413	high	1280121	chromoarm	0	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	15154026	15161356	AT3TE61645	.	+	ATHILA	Gypsy	LTR	7330	long	198	medium	1286905	chromoarm	3110	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	15161363	15168649	AT3TE61650	.	+	VANDAL20	MuDR	DNA	7286	long	51	medium	1294242	chromoarm	0	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	15166402	15166417	AT3TE61655	.	+	VANDAL20	MuDR	DNA	15	tiny	51	medium	1299281	chromoarm	143	no-CHH	no-RdDM	LowExpressed	.	.	.	.
Chr3	15168666	15168686	AT3TE61660	.	-	TNAT1A	.	DNA	20	tiny	162	medium	1301545	chromoarm	441	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	15168686	15169385	AT3TE61665	.	-	TNAT1A	.	DNA	699	short	162	medium	1301565	chromoarm	461	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	15169536	15169666	AT3TE61670	.	-	SIMPLEGUY1	Harbinger	DNA	130	short	116	medium	1302415	chromoarm	1311	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15172904	15173473	AT3TE61680	.	+	ATHATN7	HAT	DNA	569	short	71	medium	1305783	chromoarm	150	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15173791	15177525	AT3TE61685	.	-	ATLINE1_2	L1	LINE	3734	medium	41	low	1306670	chromoarm	517	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	15182785	15183876	AT3TE61700	.	-	ATREP4	Helitron	RC	1091	short	832	high	1315664	chromoarm	208	no-CHH	no-CHH	.	.	.	.	.
Chr3	15186813	15187042	AT3TE61710	.	-	ATCOPIA28	Copia	LTR	229	short	81	medium	1319692	chromoarm	4236	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	15187042	15187394	AT3TE61715	.	-	ROMANIAT5	Copia	LTR	352	short	49	low	1319921	chromoarm	4034	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	15187416	15187444	AT3TE61720	.	+	HELITRONY2	Helitron	RC	28	tiny	198	medium	1320295	chromoarm	3984	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	15187444	15188981	AT3TE61725	.	+	ATREP13	Helitron	RC	1537	short	106	medium	1320323	chromoarm	2447	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15188981	15189168	AT3TE61730	.	+	ATREP7	Helitron	RC	187	short	164	medium	1321860	chromoarm	2260	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15189169	15189990	AT3TE61735	.	+	ATREP7	Helitron	RC	822	short	164	medium	1322047	chromoarm	1438	.	.	LowExpressed	.	.	.	.
Chr3	15203100	15204287	AT3TE61790	.	+	ATREP10B	Helitron	RC	1187	short	491	high	1335979	chromoarm	447	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	15204287	15204503	AT3TE61795	.	+	ATREP10D	Helitron	RC	216	short	1295	high	1337166	chromoarm	1634	no-CHH	no-CHH	.	.	.	.	.
Chr3	15205152	15205398	AT3TE61800	.	-	ATLINE2	L1	LINE	246	short	138	medium	1338031	chromoarm	2377	no-CHH	no-CHH	.	.	.	.	.
Chr3	15205489	15205824	AT3TE61805	.	+	ATHILA7	Gypsy	LTR	335	short	134	medium	1338368	chromoarm	1951	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	15206648	15207059	AT3TE61810	.	+	ATHILA7	Gypsy	LTR	411	short	134	medium	1339527	chromoarm	716	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	15215167	15215216	AT3TE61840	.	+	ATREP10B	Helitron	RC	49	tiny	491	high	1348046	chromoarm	727	no-CHH	no-CHH	.	.	.	.	.
Chr3	15215216	15215775	AT3TE61845	.	-	ATHATN3	HAT	DNA	559	short	70	medium	1348095	chromoarm	776	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15215775	15215878	AT3TE61850	.	+	ATREP10A	Helitron	RC	103	short	279	high	1348654	chromoarm	834	no-CHH	no-CHH	.	.	.	.	.
Chr3	15215958	15216392	AT3TE61855	.	-	BRODYAGA1A	MuDR	DNA	434	short	586	high	1348837	chromoarm	320	no-CHH	no-CHH	.	.	.	.	.
Chr3	15216392	15216470	AT3TE61860	.	-	ATHPOGON1	Pogo	DNA	78	tiny	174	medium	1349271	chromoarm	242	no-CHH	no-CHH	.	.	.	.	.
Chr3	15217645	15217855	AT3TE61865	.	+	ATCOPIA35	Copia	LTR	210	short	22	low	1350524	chromoarm	183	no-RdDM	no-CHH	.	.	.	.	.
Chr3	15218513	15218619	AT3TE61870	.	-	ATREP10B	Helitron	RC	106	short	491	high	1351392	chromoarm	834	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr3	15218619	15219303	AT3TE61875	.	+	ATHPOGON2	Pogo	DNA	684	short	27	low	1351498	chromoarm	150	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	15219303	15219399	AT3TE61880	.	+	HELITRONY1B	Helitron	RC	96	tiny	414	high	1352182	chromoarm	54	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	15220176	15220213	AT3TE61885	.	+	HELITRONY3	Helitron	RC	37	tiny	1399	high	1353055	chromoarm	0	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	15220213	15220271	AT3TE61890	.	-	ATREP3	Helitron	RC	58	tiny	1439	high	1353092	chromoarm	0	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15220271	15220965	AT3TE61895	.	+	ATHPOGON3	Pogo	DNA	694	short	118	medium	1353150	chromoarm	0	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	15221816	15221989	AT3TE61900	.	-	RathE3_cons	.	RathE3_cons	174	short	104	medium	1354694	chromoarm	92	.	.	.	.	.	.	.
Chr3	15225348	15225507	AT3TE61910	.	+	RathE1_cons	.	RathE1_cons	160	short	213	high	1358226	chromoarm	223	.	.	LowExpressed	.	.	.	.
Chr3	15225960	15226132	AT3TE61915	.	-	RathE3_cons	.	RathE3_cons	173	short	104	medium	1358838	chromoarm	835	.	.	.	.	.	.	.
Chr3	15228728	15229108	AT3TE61925	.	-	ARNOLDY2	MuDR	DNA	380	short	288	high	1361607	chromoarm	669	no-RdDM	no-CHH	.	.	.	.	.
Chr3	15229108	15229511	AT3TE61930	.	+	ATTIRX1B	.	DNA	403	short	44	low	1361987	chromoarm	266	no-RdDM	no-CHH	.	.	.	.	.
Chr3	15246805	15248307	AT3TE62000	.	+	ATLANTYS3	Gypsy	LTR	1502	short	142	medium	1379684	chromoarm	1771	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	15248390	15248420	AT3TE62005	.	+	ATLANTYS1	Gypsy	LTR	30	tiny	153	medium	1381269	chromoarm	3356	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	15248420	15250375	AT3TE62010	.	+	ATLANTYS1	Gypsy	LTR	1955	short	153	medium	1381299	chromoarm	3386	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	15250438	15250952	AT3TE62015	.	+	ATHILA2	Gypsy	LTR	514	short	413	high	1383317	chromoarm	5404	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	15250955	15257912	AT3TE62020	.	+	ATHILA0_I	Gypsy	LTR	6957	long	138	medium	1383834	chromoarm	5921	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	15257912	15263797	AT3TE62025	.	+	ATHILA2	Gypsy	LTR	5885	long	413	high	1390791	chromoarm	12878	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	15263797	15263821	AT3TE62030	.	+	ATHILA	Gypsy	LTR	24	tiny	198	medium	1396676	chromoarm	18763	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15263894	15265298	AT3TE62035	.	+	ATLANTYS3	Gypsy	LTR	1404	short	142	medium	1396773	chromoarm	18860	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	15265052	15265080	AT3TE62040	.	+	ATLANTYS2	Gypsy	LTR	28	tiny	179	medium	1397931	chromoarm	19780	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	15267723	15267919	AT3TE62050	.	+	ATLANTYS3	Gypsy	LTR	196	short	142	medium	1400602	chromoarm	16941	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	15268458	15268910	AT3TE62055	.	+	ATENSPM1A	En-Spm	DNA	452	short	77	medium	1401337	chromoarm	15950	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	15269866	15269925	AT3TE62060	.	+	VANDAL6	MuDR	DNA	59	tiny	89	medium	1402745	chromoarm	14935	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	15270235	15270506	AT3TE62065	.	-	ATENSPM9	En-Spm	DNA	271	short	97	medium	1403114	chromoarm	14354	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	15270506	15270544	AT3TE62070	.	-	ATENSPM5	En-Spm	DNA	38	tiny	111	medium	1403385	chromoarm	14316	no-CHH	no-CHH	.	.	.	.	.
Chr3	15270892	15270934	AT3TE62075	.	-	VANDAL18NB	MuDR	DNA	42	tiny	19	low	1403771	chromoarm	13926	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15270934	15271719	AT3TE62080	.	+	VANDAL18NB	MuDR	DNA	785	short	19	low	1403813	chromoarm	13141	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15271725	15277050	AT3TE62085	.	-	ATLINEIII	L1	LINE	5325	long	196	medium	1404604	chromoarm	7810	no-CHH	no-CHH	.	.	.	.	.
Chr3	15277086	15279230	AT3TE62090	.	+	ATREP15	Helitron	RC	2144	medium	1003	high	1409965	chromoarm	5630	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	15279360	15279585	AT3TE62095	.	+	HELITRONY2	Helitron	RC	225	short	198	medium	1412239	chromoarm	5275	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15280255	15289099	AT3TE62100	.	+	HELITRON2	Helitron	RC	8844	long	194	medium	1413134	chromoarm	0	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	15286300	15284043	-	transcript_id-"98384c8b-b992-48cc-857a-317adf2d7660|8"
Chr3	15282051	15282110	AT3TE62105	.	+	HELITRON4	Helitron	RC	59	tiny	199	medium	1414930	chromoarm	2750	no-RdDM	no-CHH	.	.	.	.	.
Chr3	15282317	15282360	AT3TE62110	.	+	HELITRON3	Helitron	RC	43	tiny	53	medium	1415196	chromoarm	2500	no-RdDM	no-CHH	.	.	.	.	.
Chr3	15282360	15283350	AT3TE62115	.	+	HELITRON2	Helitron	RC	990	short	194	medium	1415239	chromoarm	1510	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	15283647	15283911	AT3TE62120	.	-	ATENSPM3	En-Spm	DNA	264	short	98	medium	1416526	chromoarm	949	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	15286419	15286632	AT3TE62130	.	-	ATENSPM3	En-Spm	DNA	213	short	98	medium	1419298	chromoarm	568	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	15289162	15289264	AT3TE62140	.	+	HELITRON2	Helitron	RC	102	short	194	medium	1422041	chromoarm	3311	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	15289505	15289552	AT3TE62145	.	+	HELITRON1	Helitron	RC	47	tiny	130	medium	1422384	chromoarm	3654	no-CHH	RDR6-RdDM	.	.	.	.	.
Chr3	15289552	15290786	AT3TE62150	.	+	HELITRON2	Helitron	RC	1234	short	194	medium	1422431	chromoarm	3701	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	15290006	15290107	AT3TE62155	.	+	HELITRON2	Helitron	RC	102	short	194	medium	1422884	chromoarm	4154	.	.	.	.	.	.	.
Chr3	15290349	15290436	AT3TE62160	.	+	HELITRON1	Helitron	RC	87	tiny	130	medium	1423228	chromoarm	4498	no-CHH	no-CHH	.	.	.	.	.
Chr3	15290787	15290807	AT3TE62165	.	+	HELITRON2	Helitron	RC	21	tiny	194	medium	1423665	chromoarm	4935	.	.	.	.	.	.	.
Chr3	15290850	15290951	AT3TE62170	.	+	HELITRON2	Helitron	RC	102	short	194	medium	1423728	chromoarm	4998	.	.	.	.	.	.	.
Chr3	15293931	15294078	AT3TE62180	.	-	ATTIRX1A	.	DNA	147	short	63	medium	1426810	chromoarm	8080	no-CHH	no-CHH	.	.	.	.	.
Chr3	15294854	15294941	AT3TE62185	.	-	ATREP10D	Helitron	RC	87	tiny	1295	high	1427733	chromoarm	9003	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	15294941	15295804	AT3TE62190	.	+	HELITRONY2	Helitron	RC	863	short	198	medium	1427820	chromoarm	9090	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	15298383	15295608	-	transcript_id-"09723e7c-3d2f-4ec9-a660-baae93ff4f45|3"
Chr3	15295804	15295972	AT3TE62195	.	+	ATREP3	Helitron	RC	168	short	1439	high	1428683	chromoarm	9953	PolIV-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	15298383,15298383	15295608,15295719	-,-	transcript_id-"09723e7c-3d2f-4ec9-a660-baae93ff4f45|3",transcript_id-"00ce8711-91d2-4cdb-9fec-51eb5189a287|4"
Chr3	15298687	15298922	AT3TE62205	.	-	ATCOPIA95	Copia	LTR	235	short	72	medium	1431566	chromoarm	12836	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	15298930	15299628	AT3TE62210	.	-	ATCOPIA95	Copia	LTR	698	short	72	medium	1431809	chromoarm	13079	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	15299628	15307268	AT3TE62215	.	-	ATHILA5	Gypsy	LTR	7640	long	131	medium	1432507	chromoarm	13777	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	15302765,15300032,15302616,15301910,15306139	15299873,15299913,15299933,15301123,15306385	-,-,-,-,+	transcript_id-"c289af35-2d8b-48ab-be68-dbf782461aa4|8",transcript_id-"fd68f7b2-e69b-49d9-898f-2bbf6c6104d0|6",transcript_id-"6951b451-584d-42d9-93e4-959485f6553d|3",transcript_id-"94f8b4bf-7ff6-4379-b95f-e231edf37988|5",transcript_id-"f82800bf-dbb7-493a-9662-f564a3253751|14"
Chr3	15307705	15312682	AT3TE62220	.	+	ATLINEIII	L1	LINE	4977	medium	196	medium	1440584	chromoarm	19453	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	15312682	15313410	AT3TE62225	.	-	ATHILA5	Gypsy	LTR	728	short	131	medium	1445561	chromoarm	18725	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	15313428	15316169	AT3TE62230	.	-	ATCOPIA95	Copia	LTR	2741	medium	72	medium	1446307	chromoarm	15966	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	15314814	15315966	AT3TE62235	.	+	ATHILA4B_LTR	Gypsy	LTR	1152	short	143	medium	1447693	chromoarm	16169	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	15316176	15317410	AT3TE62240	.	+	HELITRON3	Helitron	RC	1234	short	53	medium	1449055	chromoarm	14725	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	15317831	15319063	AT3TE62245	.	+	ATGP1	Gypsy	LTR	1232	short	144	medium	1450710	chromoarm	13072	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	15319109	15319205	AT3TE62250	.	+	ATMU6	MuDR	DNA	96	tiny	26	low	1451988	chromoarm	12930	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	15319208	15319811	AT3TE62255	.	+	BOMZH2	MuDR	DNA	603	short	47	low	1452087	chromoarm	12324	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15320019	15331453	AT3TE62260	.	+	VANDAL2	MuDR	DNA	11434	long	43	low	1452898	chromoarm	682	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	15323243	15324450	+	transcript_id-"20c50451-1b6c-4f74-853c-75ec35756796|3"
Chr3	15333395	15333664	AT3TE62265	.	+	ATRE1	Copia	LTR	269	short	22	low	1466274	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	15333929	15334569	AT3TE62270	.	+	ATCOPIA56	Copia	LTR	640	short	16	low	1466808	chromoarm	226	no-CHH	no-CHH	.	.	.	.	.
Chr3	15334759	15335362	AT3TE62275	.	+	ATDNA2T9C	MuDR	DNA	603	short	242	high	1467638	chromoarm	61	no-RdDM	no-CHH	.	.	.	.	.
Chr3	15336041	15336427	AT3TE62280	.	-	BRODYAGA1A	MuDR	DNA	386	short	586	high	1468920	chromoarm	525	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	15336908	15336972	AT3TE62285	.	+	ATHAT1	HAT	DNA	64	tiny	105	medium	1469787	chromoarm	1392	no-RdDM	no-CHH	.	.	.	.	.
Chr3	15337478	15337627	AT3TE62290	.	-	ATSINE4	.	SINE	149	short	98	medium	1470357	chromoarm	1962	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	15337692	15338069	AT3TE62295	.	+	ATDNA12T3_2	.	DNA	377	short	660	high	1470571	chromoarm	2176	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15338690	15338713	AT3TE62300	.	+	ATREP10B	Helitron	RC	23	tiny	491	high	1471569	chromoarm	1790	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr3	15338715	15339110	AT3TE62305	.	+	ATREP10A	Helitron	RC	395	short	279	high	1471594	chromoarm	1393	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15339110	15347116	AT3TE62310	.	-	ATREP10D	Helitron	RC	8006	long	1295	high	1471989	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	15340440	15340506	AT3TE62315	.	+	ATREP10D	Helitron	RC	66	tiny	1295	high	1473319	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	15341518	15342121	AT3TE62320	.	-	TNAT1A	.	DNA	603	short	162	medium	1474397	chromoarm	409	no-CHH	no-CHH	.	.	.	.	.
Chr3	15344559	15345202	AT3TE62330	.	+	HELITRONY1D	Helitron	RC	643	short	756	high	1477438	chromoarm	136	no-CHH	no-CHH	.	.	.	.	.
Chr3	15347955	15348893	AT3TE62340	.	-	ATREP10B	Helitron	RC	938	short	491	high	1480834	chromoarm	2410	no-CHH	no-CHH	.	.	.	.	.
Chr3	15349218	15349377	AT3TE62345	.	+	HELITRON3	Helitron	RC	159	short	53	medium	1482097	chromoarm	3673	no-CHH	no-CHH	.	.	.	.	.
Chr3	15349377	15349725	AT3TE62350	.	+	HELITRONY3A	Helitron	RC	348	short	49	low	1482256	chromoarm	3832	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15349725	15350041	AT3TE62355	.	+	ATLINE1_5	L1	LINE	316	short	91	medium	1482604	chromoarm	4180	no-RdDM	no-CHH	.	.	.	.	.
Chr3	15350041	15352842	AT3TE62360	.	+	ATLINE1A	L1	LINE	2801	medium	289	high	1482920	chromoarm	1915	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15352844	15353060	AT3TE62365	.	-	ATHILA4	Gypsy	LTR	216	short	250	high	1485723	chromoarm	1697	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	15353060	15354750	AT3TE62370	.	-	HELITRONY1E	Helitron	RC	1690	short	447	high	1485939	chromoarm	7	no-CHH	no-CHH	.	.	.	.	.
Chr3	15356063	15356847	AT3TE62375	.	+	ATREP10B	Helitron	RC	784	short	491	high	1488942	chromoarm	77	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15358637	15358955	AT3TE62380	.	-	ATREP5	Helitron	RC	318	short	624	high	1491516	chromoarm	827	no-CHH	no-CHH	.	.	.	.	.
Chr3	15358955	15359569	AT3TE62385	.	+	TNAT1A	.	DNA	614	short	162	medium	1491834	chromoarm	213	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15360393	15361514	AT3TE62390	.	+	Unassigned	.	Unassigned	1121	short	.	low	1493272	chromoarm	389	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	15361696	15365347	AT3TE62395	.	+	Unassigned	.	Unassigned	3651	medium	.	low	1494575	chromoarm	1692	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	15366939	15367297	AT3TE62400	.	+	VANDALNX2	MuDR	DNA	358	short	37	low	1499818	chromoarm	372	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	15371118	15371565	AT3TE62410	.	+	ATREP5	Helitron	RC	447	short	624	high	1503997	chromoarm	1344	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	15371565	15372046	AT3TE62415	.	+	HELITRONY3	Helitron	RC	481	short	1399	high	1504444	chromoarm	1791	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	15372046	15372114	AT3TE62420	.	+	SIMPLEHAT2	HAT	DNA	68	tiny	73	medium	1504925	chromoarm	2272	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15372114	15372134	AT3TE62425	.	+	SIMPLEHAT2	HAT	DNA	20	tiny	73	medium	1504993	chromoarm	2340	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15372138	15372738	AT3TE62430	.	+	VANDAL22	MuDR	DNA	600	short	48	low	1505017	chromoarm	2364	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15373251	15373287	AT3TE62435	.	+	ATMU9	MuDR	DNA	36	tiny	16	low	1506130	chromoarm	3477	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	15373287	15375658	AT3TE62440	.	+	ATMU11	MuDR	DNA	2371	medium	20	low	1506166	chromoarm	3513	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	15375658	15375688	AT3TE62445	.	+	ATMU5	MuDR	DNA	30	tiny	24	low	1508537	chromoarm	5884	no-RdDM	no-CHH	.	.	.	.	.
Chr3	15376263	15390264	AT3TE62450	.	+	VANDAL22	MuDR	DNA	14001	long	48	low	1509142	chromoarm	1303	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	15385981	15385160	-	transcript_id-"f65f7131-3867-4ad0-9249-1d4c8020154b|8"
Chr3	15377110	15382209	AT3TE62455	.	+	ATCOPIA33	Copia	LTR	5099	long	6	low	1509989	chromoarm	7336	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	15390312	15390480	AT3TE62480	.	+	VANDAL22	MuDR	DNA	168	short	48	low	1523191	chromoarm	1087	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	15390501	15391219	AT3TE62485	.	+	ATCOPIA28	Copia	LTR	718	short	81	medium	1523380	chromoarm	348	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	15392049	15392209	AT3TE62490	.	-	ATGP5	Gypsy	LTR	160	short	86	medium	1524928	chromoarm	0	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	15394488	15394907	AT3TE62495	.	+	ATCOPIA27	Copia	LTR	419	short	19	low	1527367	chromoarm	25	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15394907	15396592	AT3TE62500	.	+	ROMANIAT5	Copia	LTR	1685	short	49	low	1527786	chromoarm	444	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15396592	15396625	AT3TE62505	.	+	ROMANIAT5	Copia	LTR	33	tiny	49	low	1529471	chromoarm	2129	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	15397235	15397262	AT3TE62510	.	-	ATREP15	Helitron	RC	27	tiny	1003	high	1530114	chromoarm	1596	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	15397262	15397553	AT3TE62515	.	+	HELITRONY1E	Helitron	RC	291	short	447	high	1530141	chromoarm	1305	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	15397553	15398002	AT3TE62520	.	+	ATREP5	Helitron	RC	449	short	624	high	1530432	chromoarm	856	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	15398002	15398151	AT3TE62525	.	-	ATREP15	Helitron	RC	149	short	1003	high	1530881	chromoarm	707	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	15402056	15402188	AT3TE62535	.	-	ATREP10A	Helitron	RC	132	short	279	high	1534935	chromoarm	224	no-CHH	DCL3-RdDM	.	.	.	.	.
Chr3	15402841	15403701	AT3TE62540	.	-	ATREP15	Helitron	RC	860	short	1003	high	1535720	chromoarm	42	no-CHH	no-CHH	.	.	.	.	.
Chr3	15403871	15405378	AT3TE62545	.	-	Unassigned	.	Unassigned	1507	short	.	low	1536750	chromoarm	709	no-CHH	no-CHH	ExpressedAndAnnotated	15405433	15403761	-	transcript_id-"d44ad537-12b2-4270-9c0e-7e65ab2195f6|23"
Chr3	15408944	15409667	AT3TE62555	.	+	Unassigned	.	Unassigned	723	short	.	low	1541823	chromoarm	1245	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	15410360	15410693	AT3TE62560	.	-	ATHILA7	Gypsy	LTR	333	short	134	medium	1543239	chromoarm	2661	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	15411833	15412163	AT3TE62565	.	-	ATHILA7	Gypsy	LTR	330	short	134	medium	1544712	chromoarm	4134	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	15413165	15416640	AT3TE62570	.	+	ATHAT7	HAT	DNA	3475	medium	20	low	1546044	chromoarm	5466	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	15416732	15417059	AT3TE62575	.	-	ATHILA7	Gypsy	LTR	327	short	134	medium	1549611	chromoarm	9033	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	15418211	15418446	AT3TE62580	.	-	ATHILA7	Gypsy	LTR	235	short	134	medium	1551090	chromoarm	10512	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	15419532	15419855	AT3TE62585	.	-	ATHILA7	Gypsy	LTR	323	short	134	medium	1552411	chromoarm	10914	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	15420059	15420530	AT3TE62590	.	+	Unassigned	.	Unassigned	471	short	.	low	1552938	chromoarm	10239	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	15422160	15430585	AT3TE62595	.	+	VANDAL17	MuDR	DNA	8425	long	178	medium	1555039	chromoarm	184	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	15430396	15426957	-	transcript_id-"b264a8e4-37ac-4ff3-b125-b115eecb1546|4"
Chr3	15433308	15433504	AT3TE62605	.	-	VANDAL3	MuDR	DNA	196	short	177	medium	1566187	chromoarm	273	no-CHH	no-CHH	.	.	.	.	.
Chr3	15433581	15433762	AT3TE62610	.	+	VANDAL3	MuDR	DNA	181	short	177	medium	1566460	chromoarm	546	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	15433806	15434736	AT3TE62615	.	-	VANDAL3	MuDR	DNA	930	short	177	medium	1566685	chromoarm	771	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15435040	15436149	AT3TE62620	.	-	ATGP1	Gypsy	LTR	1109	short	144	medium	1567919	chromoarm	2005	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	15436930	15437158	AT3TE62625	.	-	ATMU2	MuDR	DNA	228	short	64	medium	1569809	chromoarm	3895	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15437182	15437401	AT3TE62630	.	-	ATREP3	Helitron	RC	219	short	1439	high	1570061	chromoarm	4147	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	15437401	15438154	AT3TE62635	.	+	ATREP15	Helitron	RC	753	short	1003	high	1570280	chromoarm	4366	no-CHH	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	15438154	15438206	AT3TE62640	.	-	ATREP15	Helitron	RC	52	tiny	1003	high	1571033	chromoarm	5119	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	15439001	15439059	AT3TE62645	.	-	HELITRONY1B	Helitron	RC	58	tiny	414	high	1571880	chromoarm	5966	no-CHH	no-CHH	.	.	.	.	.
Chr3	15439063	15440069	AT3TE62650	.	+	ATMUN1	MuDR	DNA	1006	short	107	medium	1571942	chromoarm	6028	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	15441106	15446921	AT3TE62655	.	-	TA11	L1	LINE	5815	long	157	medium	1573985	chromoarm	1713	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	15449693	15450045	AT3TE62665	.	-	ATREP6	Helitron	RC	352	short	181	medium	1582572	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15450045	15453326	AT3TE62670	.	-	ATREP3	Helitron	RC	3281	medium	1439	high	1582924	chromoarm	175	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	15453327	15453835	AT3TE62675	.	-	BRODYAGA1	MuDR	DNA	509	short	251	high	1586205	chromoarm	3456	.	.	.	.	.	.	.
Chr3	15453836	15454232	AT3TE62680	.	+	ATLINE1A	L1	LINE	397	short	289	high	1586714	chromoarm	3965	.	.	.	.	.	.	.
Chr3	15455635	15468075	AT3TE62685	.	-	ATHILA0_I	Gypsy	LTR	12440	long	138	medium	1588514	chromoarm	5269	no-RdDM	no-RdDM	ExpressedAndAnnotated	15458614,15458628,15458628,15458614,15468065	15456540,15458037,15458439,15458506,15467860	-,-,-,-,-	transcript_id-"a1b5a202-574a-4806-ab5c-d1e92895d556|16",transcript_id-"70e77a5f-300e-48c7-a85b-f501a101b3e5|111",transcript_id-"918439c1-622d-4065-876d-bbeaaa5bf7f5|26",transcript_id-"e9f9e9da-0000-4dde-babd-78a2ca2b233e|3",transcript_id-"78041dc3-d49b-4a52-bb86-980892bff61c|3"
Chr3	15468076	15469122	AT3TE62690	.	-	BRODYAGA1	MuDR	DNA	1047	short	251	high	1600954	chromoarm	4222	.	.	.	.	.	.	.
Chr3	15469123	15469519	AT3TE62695	.	+	ATLINE1A	L1	LINE	397	short	289	high	1602001	chromoarm	3825	.	.	.	.	.	.	.
Chr3	15470921	15472582	AT3TE62700	.	-	ATHILA3	Gypsy	LTR	1661	short	243	high	1603800	chromoarm	762	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	15472582	15472624	AT3TE62705	.	-	ATHILA6A	Gypsy	LTR	42	tiny	247	high	1605461	chromoarm	720	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	15475226	15475693	AT3TE62715	.	+	ATLINE1A	L1	LINE	467	short	289	high	1608105	chromoarm	461	no-CHH	no-RdDM	.	.	.	.	.
Chr3	15476398	15477549	AT3TE62720	.	+	ATGP1	Gypsy	LTR	1151	short	144	medium	1609277	chromoarm	1471	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	15480830	15480906	AT3TE62730	.	+	ATENSPM9	En-Spm	DNA	76	tiny	97	medium	1613709	chromoarm	802	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	15480906	15481763	AT3TE62735	.	+	ATENSPM6	En-Spm	DNA	857	short	151	medium	1613785	chromoarm	878	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	15479936	15482447	+	transcript_id-"de9b5803-3b7a-4c2f-ab0b-f1760b074300|12"
Chr3	15482907	15482935	AT3TE62740	.	+	ATREP1	Helitron	RC	28	tiny	498	high	1615786	chromoarm	2879	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15482947	15483539	AT3TE62745	.	-	HELITRONY3	Helitron	RC	592	short	1399	high	1615826	chromoarm	2919	no-CHH	no-CHH	.	.	.	.	.
Chr3	15484056	15486524	AT3TE62750	.	-	ATREP3	Helitron	RC	2468	medium	1439	high	1616935	chromoarm	4028	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15486524	15486557	AT3TE62755	.	-	HELITRONY1A	Helitron	RC	33	tiny	271	high	1619403	chromoarm	6496	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	15486557	15487020	AT3TE62760	.	+	ATREP10D	Helitron	RC	463	short	1295	high	1619436	chromoarm	6529	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15488404	15488879	AT3TE62765	.	+	TA11	L1	LINE	475	short	157	medium	1621283	chromoarm	8376	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	15489258	15489736	AT3TE62770	.	+	ATLINE1_4	L1	LINE	478	short	102	medium	1622137	chromoarm	9230	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	15489736	15491476	AT3TE62775	.	+	ATLINE1_5	L1	LINE	1740	short	91	medium	1622615	chromoarm	9708	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	15491889	15492288	AT3TE62780	.	-	ATENSPM10	En-Spm	DNA	399	short	81	medium	1624768	chromoarm	10703	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	15493533	15499327	AT3TE62785	.	-	ATLINE1_6	L1	LINE	5794	long	129	medium	1626412	chromoarm	3664	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	15503540	15503675	AT3TE62795	.	-	ATMUN1	MuDR	DNA	135	short	107	medium	1636419	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	15503675	15506730	AT3TE62800	.	+	ATREP15	Helitron	RC	3055	medium	1003	high	1636554	chromoarm	43	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15506730	15506798	AT3TE62805	.	+	VANDAL16	MuDR	DNA	68	tiny	42	low	1639609	chromoarm	0	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr3	15507040	15507184	AT3TE62810	.	-	VANDAL1	MuDR	DNA	144	short	80	medium	1639919	chromoarm	0	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	15507666	15509305	AT3TE62815	.	-	ATLINE1A	L1	LINE	1639	short	289	high	1640545	chromoarm	447	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15512125	15512198	AT3TE62825	.	+	ATCOPIA24	Copia	LTR	73	tiny	27	low	1645004	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	15525359	15525419	AT3TE62880	.	+	ATGP3	Gypsy	LTR	60	tiny	60	medium	1658238	chromoarm	1432	PolIV-and-RDR6-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	15525589	15525614	AT3TE62885	.	+	ATGP3	Gypsy	LTR	25	tiny	60	medium	1658468	chromoarm	1662	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	15525616	15526100	AT3TE62890	.	+	ATGP9B	Gypsy	LTR	484	short	27	low	1658495	chromoarm	1689	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	15527180	15530085	AT3TE62895	.	-	ATLINE1_6	L1	LINE	2905	medium	129	medium	1660059	chromoarm	256	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	15530085	15530115	AT3TE62900	.	-	ATLINE1_6	L1	LINE	30	tiny	129	medium	1662964	chromoarm	226	no-RdDM	no-CHH	.	.	.	.	.
Chr3	15531361	15531438	AT3TE62905	.	+	ATHATN5	HAT	DNA	77	tiny	42	low	1664240	chromoarm	888	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	15531438	15531799	AT3TE62910	.	+	ATHATN5	HAT	DNA	361	short	42	low	1664317	chromoarm	965	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	15533897	15538592	AT3TE62915	.	-	TA11	L1	LINE	4695	medium	157	medium	1666776	chromoarm	223	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	15535801	15535828	AT3TE62920	.	-	ATLINE1_4	L1	LINE	27	tiny	102	medium	1668680	chromoarm	2987	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	15540531	15549243	AT3TE62940	.	+	ATCOPIA43	Copia	LTR	8712	long	29	low	1673410	chromoarm	1113	no-RdDM	no-RdDM	ExpressedAndAnnotated	15540610,15546919,15548900	15549197,15548558,15549197	+,+,+	transcript_id-"325a0b20-564d-46c0-9e29-031a156f53f9|3",transcript_id-"d0259ca9-0770-4c7e-a4ac-1f36fed1c868|5",transcript_id-"ef4be8a4-605f-4e05-8bd8-8530d30ea98c|10"
Chr3	15549244	15549444	AT3TE62945	.	-	ATENSPM1	En-Spm	DNA	200	short	30	low	1682123	chromoarm	9826	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15550109	15551139	AT3TE62950	.	-	ATENSPM1A	En-Spm	DNA	1030	short	77	medium	1682988	chromoarm	10691	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	15552106	15554973	AT3TE62955	.	-	ATENSPM2	En-Spm	DNA	2867	medium	114	medium	1684985	chromoarm	10358	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	15554973	15555033	AT3TE62960	.	-	ATENSPM5	En-Spm	DNA	60	tiny	111	medium	1687852	chromoarm	10298	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	15555357	15559770	AT3TE62965	.	-	ATGP3	Gypsy	LTR	4413	medium	60	medium	1688236	chromoarm	5561	no-CHH	no-CHH	.	.	.	.	.
Chr3	15559770	15560095	AT3TE62970	.	-	ATGP9B	Gypsy	LTR	325	short	27	low	1692649	chromoarm	5236	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	15561429	15562624	AT3TE62975	.	-	ATENSPM2	En-Spm	DNA	1195	short	114	medium	1694308	chromoarm	2707	PolIV-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	15562069	15560636	-	transcript_id-"77194436-d5a9-4a29-942f-ad941048024c|16"
Chr3	15563150	15563172	AT3TE62980	.	-	ATREP10D	Helitron	RC	22	tiny	1295	high	1696029	chromoarm	2159	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15563172	15564950	AT3TE62985	.	+	ATREP10D	Helitron	RC	1778	short	1295	high	1696051	chromoarm	381	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	15564950	15565168	AT3TE62990	.	+	ATREP11	Helitron	RC	218	short	841	high	1697829	chromoarm	163	no-CHH	no-CHH	.	.	.	.	.
Chr3	15565168	15565200	AT3TE62995	.	+	ATREP10D	Helitron	RC	32	tiny	1295	high	1698047	chromoarm	131	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	15565928	15565959	AT3TE63000	.	-	HELITRONY3	Helitron	RC	31	tiny	1399	high	1698807	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	15565959	15566955	AT3TE63005	.	-	ATREP10A	Helitron	RC	996	short	279	high	1698838	chromoarm	31	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	15566955	15567106	AT3TE63010	.	+	ATREP4	Helitron	RC	151	short	832	high	1699834	chromoarm	37	no-CHH	no-CHH	ExpressedAndAnnotated	15567521	15566960	-	transcript_id-"302a761a-2e5f-498c-8624-da3fb2f5a219|3"
Chr3	15571594	15574017	AT3TE63020	.	-	ATGP3	Gypsy	LTR	2423	medium	60	medium	1704473	chromoarm	1860	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	15573533	15573652	AT3TE63025	.	-	ATGP3	Gypsy	LTR	119	short	60	medium	1706412	chromoarm	3799	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	15575002	15575056	AT3TE63030	.	-	ATLANTYS2	Gypsy	LTR	54	tiny	179	medium	1707881	chromoarm	5268	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15575056	15585468	AT3TE63035	.	-	ATLANTYS2	Gypsy	LTR	10412	long	179	medium	1707935	chromoarm	0	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	15585531	15587105	AT3TE63040	.	-	Unassigned	.	Unassigned	1574	short	.	low	1718410	chromoarm	105	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	15587055	15590902	AT3TE63045	.	+	ATHAT1	HAT	DNA	3847	medium	105	medium	1719934	chromoarm	1629	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	15591967	15597596	AT3TE63050	.	+	ATCOPIA43	Copia	LTR	5629	long	29	low	1724846	chromoarm	4347	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	15593732	15593941	AT3TE63055	.	+	ATCOPIA43	Copia	LTR	209	short	29	low	1726611	chromoarm	8002	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	15598178	15600798	AT3TE63065	.	+	Unassigned	.	Unassigned	2620	medium	.	low	1731057	chromoarm	1145	no-CHH	no-CHH	ExpressedAndAnnotated	15598297	15600796	+	transcript_id-"e7df252b-3c0b-4a63-9439-b1f65db2f1af|10"
Chr3	15600825	15601699	AT3TE63070	.	+	HELITRONY3	Helitron	RC	874	short	1399	high	1733704	chromoarm	244	no-CHH	no-RdDM	LowExpressed	.	.	.	.
Chr3	15603746	15604651	AT3TE63075	.	+	ATREP11A	Helitron	RC	905	short	95	medium	1736625	chromoarm	247	PolIV-RdDM	no-CHH	ExpressedAndAnnotated	15604525	15605243	+	transcript_id-"29c42290-2819-4a5a-85c7-377021288fd3|4"
Chr3	15605182	15605569	AT3TE63080	.	+	BRODYAGA2	MuDR	DNA	387	short	525	high	1738061	chromoarm	38	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	15607284	15607608	AT3TE63085	.	-	ATLINE1_6	L1	LINE	324	short	129	medium	1740163	chromoarm	540	no-CHH	no-CHH	.	.	.	.	.
Chr3	15607642	15608557	AT3TE63090	.	+	ATREP15	Helitron	RC	915	short	1003	high	1740521	chromoarm	898	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	15609263	15609687	AT3TE63095	.	+	ATTIR16T3A	.	DNA	424	short	106	medium	1742142	chromoarm	2519	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15609687	15609725	AT3TE63100	.	+	HELITRONY3	Helitron	RC	38	tiny	1399	high	1742566	chromoarm	2943	no-CHH	no-CHH	.	.	.	.	.
Chr3	15610161	15610827	AT3TE63105	.	+	ATREP15	Helitron	RC	666	short	1003	high	1743040	chromoarm	3417	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15610827	15611320	AT3TE63110	.	-	ATREP11	Helitron	RC	493	short	841	high	1743706	chromoarm	4083	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	15611895	15612022	AT3TE63115	.	-	ATLINE1A	L1	LINE	127	short	289	high	1744774	chromoarm	3526	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15612192	15612434	AT3TE63120	.	+	ARNOLDY2	MuDR	DNA	242	short	288	high	1745071	chromoarm	3114	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15613221	15613492	AT3TE63125	.	+	RP1_AT	.	DNA	271	short	87	medium	1746100	chromoarm	2056	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15614132	15614939	AT3TE63130	.	-	ATREP1	Helitron	RC	807	short	498	high	1747011	chromoarm	609	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15614939	15615087	AT3TE63135	.	-	BRODYAGA2	MuDR	DNA	148	short	525	high	1747818	chromoarm	461	no-CHH	no-CHH	.	.	.	.	.
Chr3	15615087	15615182	AT3TE63140	.	-	ATREP10B	Helitron	RC	95	tiny	491	high	1747966	chromoarm	366	no-CHH	no-CHH	.	.	.	.	.
Chr3	15618653	15618674	AT3TE63150	.	+	ATDNAI27T9B	MuDR	DNA	21	tiny	43	low	1751532	chromoarm	1554	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15618674	15619874	AT3TE63155	.	+	ATDNAI27T9B	MuDR	DNA	1200	short	43	low	1751553	chromoarm	1037	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	15619680,15619686,15619681	15619091,15619164,15619348	-,-,-	transcript_id-"2295b966-a283-40ac-a09e-3c73ea1e52ce|3",transcript_id-"c20a29c7-3c1e-4b93-a4b3-d7d77626e924|6",transcript_id-"26a24297-d5d4-4481-b058-5e4d3974335b|3"
Chr3	15619876	15620628	AT3TE63160	.	-	BRODYAGA2	MuDR	DNA	752	short	525	high	1752755	chromoarm	283	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	15621872	15626851	AT3TE63165	.	+	ATCOPIA16	Copia	LTR	4979	medium	12	low	1754751	chromoarm	865	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	15621985,15626552	15624044,15626828	+,+	transcript_id-"f9cde16e-1313-449f-94c7-7a9582f758b2|4",transcript_id-"6dd43eba-cf14-47d7-a92a-4e373db1967b|3"
Chr3	15627119	15627173	AT3TE63170	.	+	BRODYAGA2	MuDR	DNA	54	tiny	525	high	1759998	chromoarm	6112	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15627173	15627519	AT3TE63175	.	+	ATDNA2T9C	MuDR	DNA	346	short	242	high	1760052	chromoarm	6166	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	15627519	15631885	AT3TE63180	.	-	ATIS112A	Harbinger	DNA	4366	medium	173	medium	1760398	chromoarm	6512	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	15627975	15629280	AT3TE63185	.	+	ATHILA4C	Gypsy	LTR	1305	short	206	high	1760854	chromoarm	6968	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	15629280	15629316	AT3TE63190	.	+	ATHILA4C	Gypsy	LTR	36	tiny	206	high	1762159	chromoarm	8273	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	15632097	15632968	AT3TE63200	.	-	HELITRONY1D	Helitron	RC	871	short	756	high	1764976	chromoarm	11090	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	15633327	15634270	AT3TE63205	.	-	VANDAL8	MuDR	DNA	943	short	123	medium	1766206	chromoarm	9856	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	15634296	15634916	AT3TE63210	.	+	ATREP1	Helitron	RC	620	short	498	high	1767175	chromoarm	9210	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	15634916	15639169	AT3TE63215	.	-	VANDAL8	MuDR	DNA	4253	medium	123	medium	1767795	chromoarm	4957	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	15637303	15637783	AT3TE63220	.	-	HELITRONY1B	Helitron	RC	480	short	414	high	1770182	chromoarm	6343	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	15638368	15638620	AT3TE63225	.	+	ATREP9	Helitron	RC	252	short	201	high	1771247	chromoarm	5506	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	15639419	15639656	AT3TE63230	.	+	ATREP16	MuDR	DNA	237	short	47	low	1772298	chromoarm	4470	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15639656	15639779	AT3TE63235	.	-	VANDAL8	MuDR	DNA	123	short	123	medium	1772535	chromoarm	4347	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15640138	15640588	AT3TE63240	.	+	ATREP9	Helitron	RC	450	short	201	high	1773017	chromoarm	3538	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	15640362	15639862	-	transcript_id-"30fa3277-dd2a-49bd-a300-fb528efeb480|4"
Chr3	15640588	15641338	AT3TE63245	.	+	ATREP7	Helitron	RC	750	short	164	medium	1773467	chromoarm	2788	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	15641339	15641443	AT3TE63250	.	+	ATREP7	Helitron	RC	105	short	164	medium	1774217	chromoarm	2683	.	.	ExpressedAndAnnotated	15642210	15641299	-	transcript_id-"ea08597f-28a1-4991-b4fb-ffa2b0fbf443|8"
Chr3	15642286	15642941	AT3TE63255	.	-	HELITRONY1B	Helitron	RC	655	short	414	high	1775165	chromoarm	1185	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15642941	15644096	AT3TE63260	.	+	ATREP10D	Helitron	RC	1155	short	1295	high	1775820	chromoarm	30	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15645707	15646151	AT3TE63265	.	+	ATHATN1	HAT	DNA	444	short	69	medium	1778586	chromoarm	261	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15647877	15649013	AT3TE63270	.	-	ATLINEIII	L1	LINE	1136	short	196	medium	1780756	chromoarm	311	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	15649063	15649160	AT3TE63275	.	+	ATGP6	Gypsy	LTR	97	tiny	25	low	1781942	chromoarm	1497	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr3	15650341	15650778	AT3TE63280	.	-	ATCOPIA45	Copia	LTR	437	short	20	low	1783220	chromoarm	2775	no-CHH	no-CHH	.	.	.	.	.
Chr3	15651052	15651324	AT3TE63285	.	+	VANDAL5	MuDR	DNA	273	short	85	medium	1783930	chromoarm	3485	.	.	.	.	.	.	.
Chr3	15651324	15652471	AT3TE63290	.	+	VANDAL5A	MuDR	DNA	1147	short	56	medium	1784203	chromoarm	2971	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15652508	15652705	AT3TE63295	.	+	VANDAL4	MuDR	DNA	197	short	102	medium	1785387	chromoarm	2737	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	15653141	15654618	AT3TE63300	.	-	ATREP5	Helitron	RC	1478	short	624	high	1786019	chromoarm	824	.	.	LowExpressed	.	.	.	.
Chr3	15654618	15655406	AT3TE63305	.	+	ATREP10D	Helitron	RC	788	short	1295	high	1787497	chromoarm	36	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15657891	15658005	AT3TE63315	.	-	ATDNA12T3_2	.	DNA	114	short	660	high	1790770	chromoarm	0	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	15659132	15659422	AT3TE63320	.	+	BRODYAGA1A	MuDR	DNA	290	short	586	high	1792011	chromoarm	284	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15659422	15659445	AT3TE63325	.	-	BRODYAGA1A	MuDR	DNA	23	tiny	586	high	1792301	chromoarm	574	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr3	15659977	15660243	AT3TE63330	.	-	DT1	Mariner	DNA	266	short	123	medium	1792856	chromoarm	685	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	15660243	15660507	AT3TE63335	.	+	ATREP11	Helitron	RC	264	short	841	high	1793122	chromoarm	421	no-CHH	no-CHH	.	.	.	.	.
Chr3	15663449	15664072	AT3TE63345	.	+	HELITRONY1B	Helitron	RC	623	short	414	high	1796328	chromoarm	546	no-CHH	no-CHH	.	.	.	.	.
Chr3	15666565	15666787	AT3TE63355	.	+	HELITRONY3	Helitron	RC	222	short	1399	high	1799444	chromoarm	210	no-CHH	no-CHH	.	.	.	.	.
Chr3	15666787	15667488	AT3TE63360	.	+	ATN9_1	MuDR	DNA	701	short	65	medium	1799666	chromoarm	432	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15667488	15668129	AT3TE63365	.	+	ARNOLDY2	MuDR	DNA	641	short	288	high	1800367	chromoarm	1133	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	15668129	15668203	AT3TE63370	.	-	ATREP3	Helitron	RC	74	tiny	1439	high	1801008	chromoarm	1774	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	15669774	15669998	AT3TE63375	.	+	SIMPLEGUY1	Harbinger	DNA	224	short	116	medium	1802653	chromoarm	3419	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15670146	15672947	AT3TE63380	.	+	ATCOPIA12	Copia	LTR	2801	medium	15	low	1803025	chromoarm	3791	no-CHH	no-CHH	.	.	.	.	.
Chr3	15672947	15674862	AT3TE63385	.	+	ATCOPIA13	Copia	LTR	1915	short	35	low	1805826	chromoarm	3846	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	15675881	15675980	AT3TE63390	.	-	ARNOLDY1	MuDR	DNA	99	tiny	237	high	1808760	chromoarm	2728	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	15676226	15677487	AT3TE63395	.	+	ATENSPM2	En-Spm	DNA	1261	short	114	medium	1809105	chromoarm	1221	PolIV-RdDM	DCL3-RdDM	ExpressedAndAnnotated	15676631	15676441	-	transcript_id-"3f4b79e6-7d76-4466-ae72-82a36491ad0d|3"
Chr3	15676743	15677283	AT3TE63400	.	-	ATHATN6	HAT	DNA	540	short	43	low	1809622	chromoarm	1425	PolIV-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	15677189	15676979	-	transcript_id-"31be7d60-9de3-4ada-b8b9-08589d059ed3|25"
Chr3	15677490	15678385	AT3TE63405	.	-	ATENSPM2	En-Spm	DNA	895	short	114	medium	1810369	chromoarm	323	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	15678994	15679557	AT3TE63410	.	-	ATGP8	Gypsy	LTR	563	short	92	medium	1811873	chromoarm	139	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	15679557	15679581	AT3TE63415	.	-	ATGP8	Gypsy	LTR	24	tiny	92	medium	1812436	chromoarm	702	DCL3-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	15680837	15680942	AT3TE63420	.	-	HELITRONY3	Helitron	RC	105	short	1399	high	1813716	chromoarm	1982	no-CHH	no-CHH	.	.	.	.	.
Chr3	15680942	15681952	AT3TE63425	.	-	HELITRONY3	Helitron	RC	1010	short	1399	high	1813821	chromoarm	2087	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15682664	15683021	AT3TE63430	.	-	HELITRONY1E	Helitron	RC	357	short	447	high	1815543	chromoarm	3809	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	15683030	15683509	AT3TE63435	.	-	ATREP10D	Helitron	RC	479	short	1295	high	1815909	chromoarm	4175	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	15683509	15687459	AT3TE63440	.	-	HELITRONY3	Helitron	RC	3950	medium	1399	high	1816388	chromoarm	246	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	15688907	15689296	AT3TE63445	.	+	ATENSPM11	En-Spm	DNA	389	short	47	low	1821786	chromoarm	275	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	15689296	15689549	AT3TE63450	.	-	ATREP3	Helitron	RC	253	short	1439	high	1822175	chromoarm	664	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	15689549	15689572	AT3TE63455	.	-	BRODYAGA1A	MuDR	DNA	23	tiny	586	high	1822428	chromoarm	917	no-CHH	no-RdDM	.	.	.	.	.
Chr3	15691927	15692254	AT3TE63465	.	+	ATLINE1_6	L1	LINE	327	short	129	medium	1824806	chromoarm	3295	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	15690791,15690816	15692255,15692263	+,+	transcript_id-"7b10acdb-f2c6-4b6f-b579-c6f75cc42793|12",transcript_id-"874e9431-ed86-4325-a0c8-19783510fb6e|26"
Chr3	15693508	15694820	AT3TE63470	.	+	TA11	L1	LINE	1312	short	157	medium	1826387	chromoarm	4876	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	15694943	15696121	AT3TE63475	.	+	ATLINE1_4	L1	LINE	1178	short	102	medium	1827822	chromoarm	4230	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	15696121	15696188	AT3TE63480	.	+	TA11	L1	LINE	67	tiny	157	medium	1829000	chromoarm	4163	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	15697735	15698231	AT3TE63485	.	-	ATREP3	Helitron	RC	496	short	1439	high	1830614	chromoarm	2120	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	15698298	15698925	AT3TE63490	.	+	ATREP10B	Helitron	RC	627	short	491	high	1831177	chromoarm	1426	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	15702540	15705516	AT3TE63500	.	+	ATREP1	Helitron	RC	2976	medium	498	high	1835419	chromoarm	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	15703164	15703520	AT3TE63505	.	-	ATDNA2T9C	MuDR	DNA	356	short	242	high	1836043	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	15710565	15710589	AT3TE63530	.	-	ATCOPIA50	Copia	LTR	24	tiny	17	low	1843444	chromoarm	1127	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	15710589	15711475	AT3TE63535	.	-	ATCOPIA50	Copia	LTR	886	short	17	low	1843468	chromoarm	1151	no-RdDM	no-RdDM	ExpressedAndAnnotated	15712551	15710683	-	transcript_id-"09e10870-6535-4fc1-bc82-0f9ee43de305|3"
Chr3	15711475	15722693	AT3TE63540	.	-	ATHILA2	Gypsy	LTR	11218	long	413	high	1844354	chromoarm	2037	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	15712551,15713316,15717473	15710683,15712443,15716948	-,-,-	transcript_id-"09e10870-6535-4fc1-bc82-0f9ee43de305|3",transcript_id-"7d3737e5-eb85-4b9e-976f-50359dceb201|8",transcript_id-"765e9c2b-4a62-4436-9fc2-12284514a873|6"
Chr3	15722693	15727273	AT3TE63545	.	-	ATCOPIA50	Copia	LTR	4580	medium	17	low	1855572	chromoarm	902	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	15728679	15729309	AT3TE63550	.	+	ATGP8	Gypsy	LTR	630	short	92	medium	1861558	chromoarm	0	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15730742	15730821	AT3TE63555	.	-	SIMPLEGUY1	Harbinger	DNA	79	tiny	116	medium	1863621	chromoarm	1592	no-RdDM	no-CHH	.	.	.	.	.
Chr3	15730821	15731397	AT3TE63560	.	-	SIMPLEGUY1	Harbinger	DNA	576	short	116	medium	1863700	chromoarm	1671	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15732886	15733206	AT3TE63565	.	+	ATDNAI27T9A	MuDR	DNA	320	short	116	medium	1865765	chromoarm	3736	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15733256	15733404	AT3TE63570	.	+	LIMPET1	MuDR	DNA	149	short	116	medium	1866134	chromoarm	4105	.	.	.	.	.	.	.
Chr3	15733420	15733823	AT3TE63575	.	+	LIMPET1	MuDR	DNA	403	short	116	medium	1866299	chromoarm	4270	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	15733971	15734200	AT3TE63580	.	+	ATDNAI27T9C	MuDR	DNA	229	short	108	medium	1866850	chromoarm	3972	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	15734888	15735025	AT3TE63585	.	+	ATCOPIA68	Copia	LTR	138	short	43	low	1867766	chromoarm	3147	.	.	.	.	.	.	.
Chr3	15735849	15735919	AT3TE63590	.	-	ATREP6	Helitron	RC	70	tiny	181	medium	1868728	chromoarm	2253	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	15735919	15736509	AT3TE63595	.	-	ATREP8	Helitron	RC	590	short	75	medium	1868798	chromoarm	1663	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	15736509	15737233	AT3TE63600	.	-	ATREP6	Helitron	RC	724	short	181	medium	1869388	chromoarm	939	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	15737585	15737785	AT3TE63605	.	-	ATENSPM3	En-Spm	DNA	200	short	98	medium	1870464	chromoarm	387	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	15738746	15738771	AT3TE63610	.	+	ARNOLDY1	MuDR	DNA	25	tiny	237	high	1871625	chromoarm	130	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	15738771	15738833	AT3TE63615	.	-	ARNOLDY1	MuDR	DNA	62	tiny	237	high	1871650	chromoarm	155	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	15738833	15740098	AT3TE63620	.	+	HELITRONY3	Helitron	RC	1265	short	1399	high	1871712	chromoarm	217	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15740098	15740140	AT3TE63625	.	+	ARNOLDY1	MuDR	DNA	42	tiny	237	high	1872977	chromoarm	1327	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	15740141	15740490	AT3TE63630	.	+	ATREP6	Helitron	RC	350	short	181	medium	1873019	chromoarm	977	.	.	.	.	.	.	.
Chr3	15744467	15746062	AT3TE63640	.	+	ATREP10D	Helitron	RC	1595	short	1295	high	1877346	chromoarm	777	no-CHH	no-CHH	.	.	.	.	.
Chr3	15746062	15746095	AT3TE63645	.	-	BRODYAGA2	MuDR	DNA	33	tiny	525	high	1878941	chromoarm	744	no-CHH	no-CHH	.	.	.	.	.
Chr3	15746095	15746233	AT3TE63650	.	+	ATREP10D	Helitron	RC	138	short	1295	high	1878974	chromoarm	606	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	15747484	15747583	AT3TE63655	.	-	ATENSPM10	En-Spm	DNA	99	tiny	81	medium	1880363	chromoarm	390	no-CHH	no-CHH	.	.	.	.	.
Chr3	15748247	15748644	AT3TE63660	.	-	ATREP4	Helitron	RC	397	short	832	high	1881126	chromoarm	1153	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	15748644	15748979	AT3TE63665	.	-	ATREP11	Helitron	RC	335	short	841	high	1881523	chromoarm	1550	no-CHH	no-CHH	.	.	.	.	.
Chr3	15748979	15749864	AT3TE63670	.	-	ATREP11	Helitron	RC	885	short	841	high	1881858	chromoarm	1522	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15750005	15750074	AT3TE63675	.	-	ATREP15	Helitron	RC	69	tiny	1003	high	1882884	chromoarm	1312	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	15753054	15753157	AT3TE63685	.	+	RathE2_cons	.	RathE2_cons	103	short	74	medium	1885933	chromoarm	365	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15763317	15763414	AT3TE63720	.	-	ATREP5	Helitron	RC	97	tiny	624	high	1896196	chromoarm	54	no-CHH	no-CHH	.	.	.	.	.
Chr3	15763414	15763465	AT3TE63725	.	+	HELITRONY3	Helitron	RC	51	tiny	1399	high	1896293	chromoarm	151	no-CHH	no-CHH	.	.	.	.	.
Chr3	15763465	15764184	AT3TE63730	.	+	HELITRONY1B	Helitron	RC	719	short	414	high	1896344	chromoarm	80	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	15764184	15764689	AT3TE63735	.	-	ATLINE2	L1	LINE	505	short	138	medium	1897063	chromoarm	0	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	15765540	15765602	AT3TE63740	.	+	RathE1_cons	.	RathE1_cons	62	tiny	213	high	1898419	chromoarm	169	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	15767551	15767677	AT3TE63745	.	-	ATREP5	Helitron	RC	126	short	624	high	1900430	chromoarm	537	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	15767677	15768665	AT3TE63750	.	+	ATREP4	Helitron	RC	988	short	832	high	1900556	chromoarm	663	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	15768665	15768709	AT3TE63755	.	+	ATREP1	Helitron	RC	44	tiny	498	high	1901544	chromoarm	1651	no-CHH	no-CHH	.	.	.	.	.
Chr3	15768765	15768786	AT3TE63760	.	-	ATCOPIA62	Copia	LTR	21	tiny	16	low	1901644	chromoarm	1751	no-CHH	no-RdDM	LowExpressed	.	.	.	.
Chr3	15768786	15773753	AT3TE63765	.	-	ATCOPIA62	Copia	LTR	4967	medium	16	low	1901665	chromoarm	368	no-CHH	no-CHH	ExpressedAndAnnotated	15769096,15771856,15773831	15768817,15771635,15773617	-,-,-	transcript_id-"d7e2e45c-a600-49a1-a6f2-214e56b17643|4",transcript_id-"9a9c9fbc-0d00-4eaf-83c2-b244da2109ef|3",transcript_id-"3e9894a0-b769-4fb0-82b1-87bec13b1357|5"
Chr3	15775028	15775048	AT3TE63770	.	+	RathE3_cons	.	RathE3_cons	20	tiny	104	medium	1907907	chromoarm	0	no-CHH	no-RdDM	.	.	.	.	.
Chr3	15775048	15775148	AT3TE63775	.	+	RathE3_cons	.	RathE3_cons	100	short	104	medium	1907927	chromoarm	0	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	15776055	15776913	AT3TE63780	.	+	ATREP10D	Helitron	RC	858	short	1295	high	1908934	chromoarm	427	no-CHH	no-CHH	.	.	.	.	.
Chr3	15776913	15776968	AT3TE63785	.	-	BRODYAGA1A	MuDR	DNA	55	tiny	586	high	1909792	chromoarm	439	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	15776968	15777024	AT3TE63790	.	+	ATREP10B	Helitron	RC	56	tiny	491	high	1909847	chromoarm	383	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	15779414	15779477	AT3TE63800	.	-	ATREP10D	Helitron	RC	63	tiny	1295	high	1912293	chromoarm	179	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	15779477	15780631	AT3TE63805	.	+	ATREP3	Helitron	RC	1154	short	1439	high	1912356	chromoarm	242	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	15780631	15780831	AT3TE63810	.	+	HELITRONY1B	Helitron	RC	200	short	414	high	1913510	chromoarm	1396	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	15784436	15784620	AT3TE63820	.	-	RathE1_cons	.	RathE1_cons	184	short	213	high	1917315	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15786204	15786631	AT3TE63825	.	-	ATSINE4	.	SINE	427	short	98	medium	1919083	chromoarm	1026	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15787226	15788739	AT3TE63830	.	-	Unassigned	.	Unassigned	1513	short	.	low	1920105	chromoarm	2048	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	15788900	15788940	AT3TE63835	.	+	ATHILA4B_LTR	Gypsy	LTR	40	tiny	143	medium	1921779	chromoarm	3722	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	15788940	15789187	AT3TE63840	.	+	ATHILA4	Gypsy	LTR	247	short	250	high	1921819	chromoarm	3762	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	15789187	15792826	AT3TE63845	.	+	ATHILA4	Gypsy	LTR	3639	medium	250	high	1922066	chromoarm	3411	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	15791152	15791435	AT3TE63850	.	-	HELITRONY3	Helitron	RC	283	short	1399	high	1924031	chromoarm	4802	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	15792826	15792950	AT3TE63855	.	+	ATHILA4A	Gypsy	LTR	124	short	310	high	1925705	chromoarm	3287	DCL3-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	15794620	15794808	AT3TE63860	.	-	RathE3_cons	.	RathE3_cons	189	short	104	medium	1927498	chromoarm	1429	.	.	.	.	.	.	.
Chr3	15796798	15796938	AT3TE63865	.	+	ATLINE1_1	L1	LINE	140	short	61	medium	1929677	chromoarm	381	no-RdDM	no-CHH	ExpressedAndAnnotated	15796848	15796669	-	transcript_id-"00e5ec1b-c640-4951-9338-ec03f795dc5c|3"
Chr3	15797693	15798633	AT3TE63870	.	+	ATGP6	Gypsy	LTR	940	short	25	low	1930572	chromoarm	1276	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15798971	15799313	AT3TE63875	.	+	ATDNA12T3_2	.	DNA	342	short	660	high	1931850	chromoarm	861	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15800366	15800964	AT3TE63880	.	+	HELITRON3	Helitron	RC	598	short	53	medium	1933245	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	15802915	15803114	AT3TE63885	.	-	ATIS112A	Harbinger	DNA	199	short	173	medium	1935794	chromoarm	354	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15806509	15806969	AT3TE63895	.	+	HARBINGER	Harbinger	DNA	460	short	90	medium	1939388	chromoarm	3948	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15808430	15810650	AT3TE63900	.	+	Unassigned	.	Unassigned	2220	medium	.	low	1941309	chromoarm	5869	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	15810676	15811038	AT3TE63905	.	+	ATREP1	Helitron	RC	362	short	498	high	1943555	chromoarm	7699	no-RdDM	no-CHH	.	.	.	.	.
Chr3	15811038	15811952	AT3TE63910	.	+	ATREP1	Helitron	RC	914	short	498	high	1943917	chromoarm	6785	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15811952	15812881	AT3TE63915	.	+	ATN9_1	MuDR	DNA	929	short	65	medium	1944831	chromoarm	5856	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	15812304	15812481	AT3TE63920	.	+	ATSINE4	.	SINE	177	short	98	medium	1945183	chromoarm	6256	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	15812881	15812921	AT3TE63925	.	+	ATREP2	Helitron	RC	40	tiny	164	medium	1945760	chromoarm	5816	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr3	15812922	15813133	AT3TE63930	.	-	VANDAL8	MuDR	DNA	212	short	123	medium	1945800	chromoarm	5604	.	.	LowExpressed	.	.	.	.
Chr3	15813074	15814056	AT3TE63935	.	-	SADHU	.	Unassigned	982	short	16	low	1945953	chromoarm	4681	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	15813702	15813140	-	transcript_id-"eae2fa97-6c8f-4df4-8e4d-1aff809e7b83|92"
Chr3	15814053	15814547	AT3TE63940	.	+	ATREP2	Helitron	RC	494	short	164	medium	1946932	chromoarm	4190	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	15814547	15814610	AT3TE63945	.	-	BRODYAGA1A	MuDR	DNA	63	tiny	586	high	1947426	chromoarm	4127	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15814610	15818285	AT3TE63950	.	+	META1	Copia	LTR	3675	medium	138	medium	1947489	chromoarm	452	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	15814736,15814736,15814736,15814737,15814829,15816097,15817725,15817947	15815262,15815368,15815784,15814967,15815104,15816330,15818256,15818262	+,+,+,+,+,+,+,+	transcript_id-"866dc599-726f-42ee-8191-55379ab4ef7b|6",transcript_id-"cc23dc9c-3528-47c8-b739-290f9968d1bc|26",transcript_id-"b306f338-e6b1-4c5d-9acb-0f14d2c75f0d|8",transcript_id-"a9182cd3-c663-4cc4-a1ab-b064e043b61f|4",transcript_id-"1e179b01-9d85-410a-bdf1-a8353e427964|3",transcript_id-"5b311ce9-9f9d-40fa-8956-20c832c6584d|3",transcript_id-"e3038704-ca48-499e-aa1a-cdfb73a1b753|4",transcript_id-"6bcca8f3-50e2-40ea-8ca0-daee9d7bd875|5"
Chr3	15814785	15814839	AT3TE63955	.	+	ATCOPIA28	Copia	LTR	54	tiny	81	medium	1947664	chromoarm	3898	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	15818285	15818491	AT3TE63965	.	+	META1	Copia	LTR	206	short	138	medium	1951164	chromoarm	246	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15826464	15826520	AT3TE63990	.	-	HELITRONY3	Helitron	RC	56	tiny	1399	high	1959343	chromoarm	73	no-CHH	no-CHH	.	.	.	.	.
Chr3	15826537	15827957	AT3TE63995	.	+	HELITRONY3	Helitron	RC	1420	short	1399	high	1959416	chromoarm	146	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	15827957	15828015	AT3TE64000	.	-	HELITRONY3	Helitron	RC	58	tiny	1399	high	1960836	chromoarm	161	no-CHH	no-CHH	.	.	.	.	.
Chr3	15828015	15828189	AT3TE64005	.	+	HELITRONY3	Helitron	RC	174	short	1399	high	1960894	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	15830090	15831297	AT3TE64010	.	-	ATHILA4B_LTR	Gypsy	LTR	1207	short	143	medium	1962969	chromoarm	1002	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	15832869	15833061	AT3TE64015	.	-	ARNOLDY1	MuDR	DNA	192	short	237	high	1965748	chromoarm	2570	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15833061	15834227	AT3TE64020	.	-	ARNOLDY2	MuDR	DNA	1166	short	288	high	1965940	chromoarm	1404	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15834230	15834277	AT3TE64025	.	+	ATHILA4	Gypsy	LTR	47	tiny	250	high	1967109	chromoarm	1354	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	15834277	15834506	AT3TE64030	.	+	ATHILA4D_LTR	Gypsy	LTR	229	short	106	medium	1967156	chromoarm	1125	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	15837213	15837293	AT3TE64040	.	+	ATREP10D	Helitron	RC	80	tiny	1295	high	1970092	chromoarm	87	no-CHH	no-CHH	.	.	.	.	.
Chr3	15837293	15837718	AT3TE64045	.	+	ATREP10B	Helitron	RC	425	short	491	high	1970172	chromoarm	167	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15837977	15838023	AT3TE64050	.	+	ATREP15	Helitron	RC	46	tiny	1003	high	1970856	chromoarm	851	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15838023	15839024	AT3TE64055	.	-	ATREP3	Helitron	RC	1001	short	1439	high	1970902	chromoarm	98	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15839024	15839095	AT3TE64060	.	-	ARNOLDY2	MuDR	DNA	71	tiny	288	high	1971903	chromoarm	27	no-CHH	no-CHH	.	.	.	.	.
Chr3	15839095	15839168	AT3TE64065	.	+	ATREP15	Helitron	RC	73	tiny	1003	high	1971974	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	15841464	15841699	AT3TE64070	.	+	HELITRONY3	Helitron	RC	235	short	1399	high	1974343	chromoarm	705	no-CHH	no-CHH	.	.	.	.	.
Chr3	15841699	15842860	AT3TE64075	.	-	ATREP11	Helitron	RC	1161	short	841	high	1974578	chromoarm	302	no-CHH	no-CHH	.	.	.	.	.
Chr3	15842860	15842888	AT3TE64080	.	-	ATREP15	Helitron	RC	28	tiny	1003	high	1975739	chromoarm	274	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	15842888	15842917	AT3TE64085	.	+	ATREP15	Helitron	RC	29	tiny	1003	high	1975767	chromoarm	245	no-CHH	DCL3-RdDM	.	.	.	.	.
Chr3	15843648	15844395	AT3TE64090	.	+	ATREP10D	Helitron	RC	747	short	1295	high	1976527	chromoarm	366	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15844395	15844419	AT3TE64095	.	-	HELITRON3	Helitron	RC	24	tiny	53	medium	1977274	chromoarm	1113	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	15844428	15845166	AT3TE64100	.	+	TAG3N1	HAT	DNA	738	short	97	medium	1977307	chromoarm	1146	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	15845166	15846266	AT3TE64105	.	-	ATREP4	Helitron	RC	1100	short	832	high	1978045	chromoarm	1884	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	15846266	15846312	AT3TE64110	.	+	ATREP4	Helitron	RC	46	tiny	832	high	1979145	chromoarm	2984	no-RdDM	no-CHH	.	.	.	.	.
Chr3	15849059	15851833	AT3TE64120	.	-	ATGP3	Gypsy	LTR	2774	medium	60	medium	1981938	chromoarm	5777	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	15854634	15855439	AT3TE64130	.	-	ATREP10D	Helitron	RC	805	short	1295	high	1987513	chromoarm	10722	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15855449	15856479	AT3TE64135	.	+	ATREP4	Helitron	RC	1030	short	832	high	1988328	chromoarm	9682	no-CHH	no-CHH	.	.	.	.	.
Chr3	15856479	15856507	AT3TE64140	.	-	ATREP10D	Helitron	RC	28	tiny	1295	high	1989358	chromoarm	9654	no-CHH	no-CHH	.	.	.	.	.
Chr3	15856517	15856693	AT3TE64145	.	-	ATHATN6	HAT	DNA	176	short	43	low	1989396	chromoarm	9468	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	15857078	15858622	AT3TE64150	.	-	ATHILA8A	Gypsy	LTR	1544	short	97	medium	1989957	chromoarm	7539	no-CHH	no-CHH	.	.	.	.	.
Chr3	15858622	15858661	AT3TE64155	.	-	ATHILA8A	Gypsy	LTR	39	tiny	97	medium	1991501	chromoarm	7500	no-CHH	no-RdDM	.	.	.	.	.
Chr3	15859253	15861264	AT3TE64160	.	-	ATLINE2	L1	LINE	2011	medium	138	medium	1992132	chromoarm	4897	no-RdDM	no-CHH	.	.	.	.	.
Chr3	15864055	15864089	AT3TE64170	.	-	BRODYAGA2	MuDR	DNA	34	tiny	525	high	1996934	chromoarm	2072	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15864090	15864532	AT3TE64175	.	+	BRODYAGA2	MuDR	DNA	443	short	525	high	1996968	chromoarm	1629	.	.	.	.	.	.	.
Chr3	15864333	15864363	AT3TE64180	.	-	BRODYAGA2	MuDR	DNA	30	tiny	525	high	1997212	chromoarm	1798	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr3	15867623	15867692	AT3TE64190	.	-	ATHATN1	HAT	DNA	69	tiny	69	medium	2000502	chromoarm	350	no-CHH	no-CHH	.	.	.	.	.
Chr3	15867693	15868074	AT3TE64195	.	-	ATHATN1	HAT	DNA	382	short	69	medium	2000571	chromoarm	419	.	.	.	.	.	.	.
Chr3	15868074	15868705	AT3TE64200	.	-	ATHPOGON3	Pogo	DNA	631	short	118	medium	2000953	chromoarm	409	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	15868705	15868948	AT3TE64205	.	+	ATREP15	Helitron	RC	243	short	1003	high	2001584	chromoarm	166	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	15873074	15874976	AT3TE64215	.	-	ATREP5	Helitron	RC	1902	short	624	high	2005953	chromoarm	14	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	15874976	15875002	AT3TE64220	.	-	ATREP1	Helitron	RC	26	tiny	498	high	2007855	chromoarm	0	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	15875988	15876726	AT3TE64225	.	-	HELITRONY1D	Helitron	RC	738	short	756	high	2008867	chromoarm	650	no-RdDM	no-CHH	.	.	.	.	.
Chr3	15877055	15877799	AT3TE64230	.	-	ATREP15	Helitron	RC	744	short	1003	high	2009934	chromoarm	809	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	15879985	15880517	AT3TE64235	.	-	ATREP3	Helitron	RC	532	short	1439	high	2012864	chromoarm	222	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	15881417	15881806	AT3TE64240	.	-	BRODYAGA1A	MuDR	DNA	389	short	586	high	2014296	chromoarm	63	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	15883040	15883253	AT3TE64245	.	-	ATREP9	Helitron	RC	213	short	201	high	2015919	chromoarm	0	DCL3-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15883573	15883843	AT3TE64250	.	+	HELITRONY1D	Helitron	RC	270	short	756	high	2016452	chromoarm	0	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	15883843	15883974	AT3TE64255	.	-	ATREP11	Helitron	RC	131	short	841	high	2016722	chromoarm	205	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	15883974	15884378	AT3TE64260	.	-	ATREP11	Helitron	RC	404	short	841	high	2016853	chromoarm	336	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15884378	15885084	AT3TE64265	.	-	ATDNA2T9C	MuDR	DNA	706	short	242	high	2017257	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	15885504	15886248	AT3TE64270	.	+	ATREP5	Helitron	RC	744	short	624	high	2018383	chromoarm	124	no-CHH	no-CHH	.	.	.	.	.
Chr3	15886248	15886285	AT3TE64275	.	-	HELITRONY2	Helitron	RC	37	tiny	198	medium	2019127	chromoarm	868	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	15886285	15886540	AT3TE64280	.	+	BRODYAGA2	MuDR	DNA	255	short	525	high	2019164	chromoarm	905	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	15886707	15887131	AT3TE64285	.	-	ATDNA2T9C	MuDR	DNA	424	short	242	high	2019586	chromoarm	485	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	15887131	15887191	AT3TE64290	.	-	ATDNA2T9C	MuDR	DNA	60	tiny	242	high	2020010	chromoarm	425	no-CHH	no-CHH	.	.	.	.	.
Chr3	15892080	15892101	AT3TE64310	.	-	ATREP10B	Helitron	RC	21	tiny	491	high	2024959	chromoarm	266	no-CHH	no-CHH	.	.	.	.	.
Chr3	15892101	15892942	AT3TE64315	.	-	ATREP15	Helitron	RC	841	short	1003	high	2024980	chromoarm	287	no-CHH	no-CHH	.	.	.	.	.
Chr3	15892942	15893396	AT3TE64320	.	-	ATDNA2T9A	MuDR	DNA	454	short	48	low	2025821	chromoarm	1128	no-RdDM	no-CHH	.	.	.	.	.
Chr3	15895296	15895321	AT3TE64325	.	+	ATREP4	Helitron	RC	25	tiny	832	high	2028175	chromoarm	39	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	15895321	15895505	AT3TE64330	.	+	ATREP5	Helitron	RC	184	short	624	high	2028200	chromoarm	64	no-RdDM	no-CHH	.	.	.	.	.
Chr3	15895505	15896087	AT3TE64335	.	+	HELITRONY1A	Helitron	RC	582	short	271	high	2028384	chromoarm	113	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15896087	15896133	AT3TE64340	.	+	ATREP10B	Helitron	RC	46	tiny	491	high	2028966	chromoarm	67	no-CHH	no-CHH	.	.	.	.	.
Chr3	15896902	15898389	AT3TE64345	.	-	ATREP5	Helitron	RC	1487	short	624	high	2029781	chromoarm	546	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	15898389	15898410	AT3TE64350	.	+	BRODYAGA2	MuDR	DNA	21	tiny	525	high	2031268	chromoarm	2033	DCL3-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	15898579	15900362	AT3TE64355	.	+	ATLINE1A	L1	LINE	1783	short	289	high	2031458	chromoarm	432	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	15905688	15905718	AT3TE64370	.	+	HELITRON4	Helitron	RC	30	tiny	199	medium	2038567	chromoarm	1069	no-CHH	no-CHH	.	.	.	.	.
Chr3	15905718	15906445	AT3TE64375	.	+	ARNOLD2	MuDR	DNA	727	short	68	medium	2038597	chromoarm	342	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	15912038	15912298	AT3TE64390	.	-	DT1	Mariner	DNA	260	short	123	medium	2044917	chromoarm	673	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	15912990	15913028	AT3TE64395	.	-	ATMU9	MuDR	DNA	38	tiny	16	low	2045869	chromoarm	1625	no-CHH	no-CHH	.	.	.	.	.
Chr3	15913028	15915197	AT3TE64400	.	-	ATMU10	MuDR	DNA	2169	medium	87	medium	2045907	chromoarm	1072	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	15915197	15915262	AT3TE64405	.	-	ATMU3	MuDR	DNA	65	tiny	15	low	2048076	chromoarm	1007	no-CHH	no-CHH	.	.	.	.	.
Chr3	15916760	15917381	AT3TE64410	.	+	ATGP8	Gypsy	LTR	621	short	92	medium	2049639	chromoarm	0	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	15917490	15917569	AT3TE64415	.	-	DT1	Mariner	DNA	79	tiny	123	medium	2050369	chromoarm	158	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	15918063	15918086	AT3TE64420	.	-	ATREP2A	Helitron	RC	23	tiny	116	medium	2050942	chromoarm	731	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	15918086	15918726	AT3TE64425	.	-	ATREP2A	Helitron	RC	640	short	116	medium	2050965	chromoarm	754	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	15918726	15918874	AT3TE64430	.	+	SIMPLEHAT1	HAT	DNA	148	short	56	medium	2051605	chromoarm	1394	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	15919027	15924078	AT3TE64435	.	-	ATCOPIA11	Copia	LTR	5051	long	26	low	2051906	chromoarm	1695	no-RdDM	no-RdDM	ExpressedAndAnnotated	15923916,15923916	15919051,15921774	-,-	transcript_id-"150c5dec-6d9e-4528-ba3d-a91934ef699d|7",transcript_id-"87da6f90-49db-4149-bb8a-2918deaa7110|16"
Chr3	15924541	15924896	AT3TE64440	.	+	SIMPLEHAT1	HAT	DNA	355	short	56	medium	2057420	chromoarm	3319	no-CHH	no-CHH	.	.	.	.	.
Chr3	15925558	15925743	AT3TE64445	.	+	ATHATN3	HAT	DNA	185	short	70	medium	2058437	chromoarm	2472	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	15926360	15927499	AT3TE64450	.	+	ATREP8	Helitron	RC	1139	short	75	medium	2059239	chromoarm	716	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	15928678	15929052	AT3TE64455	.	-	ATMUNX1	MuDR	DNA	374	short	155	medium	2061557	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	15929052	15929292	AT3TE64460	.	-	ATREP11	Helitron	RC	240	short	841	high	2061931	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	15931111	15931413	AT3TE64465	.	+	ATSINE4	.	SINE	302	short	98	medium	2063990	chromoarm	720	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	15935466	15935838	AT3TE64475	.	+	HELITRONY1D	Helitron	RC	372	short	756	high	2068345	chromoarm	1503	no-CHH	no-CHH	.	.	.	.	.
Chr3	15936801	15936902	AT3TE64480	.	+	ATREP3	Helitron	RC	101	short	1439	high	2069680	chromoarm	2838	no-CHH	no-CHH	.	.	.	.	.
Chr3	15936902	15940069	AT3TE64485	.	+	ATREP3	Helitron	RC	3167	medium	1439	high	2069781	chromoarm	114	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15941134	15941183	AT3TE64490	.	-	ATREP11	Helitron	RC	49	tiny	841	high	2074013	chromoarm	231	no-CHH	no-CHH	.	.	.	.	.
Chr3	15941183	15943552	AT3TE64495	.	-	ATREP10D	Helitron	RC	2369	medium	1295	high	2074062	chromoarm	280	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15943552	15943578	AT3TE64500	.	-	HELITRONY3	Helitron	RC	26	tiny	1399	high	2076431	chromoarm	2649	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	15944451	15944556	AT3TE64505	.	+	RathE3_cons	.	RathE3_cons	105	short	104	medium	2077330	chromoarm	3548	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15945197	15945274	AT3TE64510	.	-	ATREP15	Helitron	RC	77	tiny	1003	high	2078076	chromoarm	3230	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	15945274	15947968	AT3TE64515	.	-	ATREP15	Helitron	RC	2694	medium	1003	high	2078153	chromoarm	536	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15946369	15946991	AT3TE64520	.	-	ATREP15	Helitron	RC	622	short	1003	high	2079248	chromoarm	1513	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15947561	15947622	AT3TE64525	.	-	ATREP15	Helitron	RC	61	tiny	1003	high	2080440	chromoarm	882	no-CHH	no-CHH	.	.	.	.	.
Chr3	15947968	15948072	AT3TE64530	.	-	ATREP3	Helitron	RC	104	short	1439	high	2080847	chromoarm	432	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	15948072	15948102	AT3TE64535	.	-	ATREP8	Helitron	RC	30	tiny	75	medium	2080951	chromoarm	402	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	15948304	15948353	AT3TE64540	.	-	ATSINE4	.	SINE	49	tiny	98	medium	2081183	chromoarm	151	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15951747	15951855	AT3TE64550	.	-	ATLINE1A	L1	LINE	108	short	289	high	2084626	chromoarm	357	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	15953250	15953290	AT3TE64555	.	-	HELITRONY1D	Helitron	RC	40	tiny	756	high	2086129	chromoarm	195	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	15953290	15954365	AT3TE64560	.	-	HELITRONY1E	Helitron	RC	1075	short	447	high	2086169	chromoarm	173	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	15954365	15954421	AT3TE64565	.	+	HELITRONY1D	Helitron	RC	56	tiny	756	high	2087244	chromoarm	117	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	15954797	15954865	AT3TE64570	.	-	VANDALNX1	MuDR	DNA	68	tiny	14	low	2087676	chromoarm	130	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15956566	15956894	AT3TE64575	.	-	BRODYAGA2	MuDR	DNA	328	short	525	high	2089445	chromoarm	1899	PolIV-and-RDR6-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	15957823	15958220	AT3TE64580	.	+	HELITRONY1B	Helitron	RC	397	short	414	high	2090702	chromoarm	3156	no-RdDM	no-CHH	.	.	.	.	.
Chr3	15958411	15958443	AT3TE64585	.	-	ATCOPIA81	Copia	LTR	32	tiny	6	low	2091290	chromoarm	3744	no-CHH	no-CHH	.	.	.	.	.
Chr3	15958443	15959799	AT3TE64590	.	-	ATCOPIA14	Copia	LTR	1356	short	7	low	2091322	chromoarm	3776	no-CHH	no-CHH	.	.	.	.	.
Chr3	15959799	15959896	AT3TE64595	.	-	ATCOPIA88	Copia	LTR	97	tiny	8	low	2092678	chromoarm	5132	no-CHH	no-CHH	.	.	.	.	.
Chr3	15960175	15964928	AT3TE64600	.	+	ATCOPIA41	Copia	LTR	4753	medium	39	low	2093054	chromoarm	3831	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	15964928	15964955	AT3TE64605	.	+	ATCOPIA42	Copia	LTR	27	tiny	35	low	2097807	chromoarm	3804	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	15967836	15967984	AT3TE64615	.	+	RathE1_cons	.	RathE1_cons	148	short	213	high	2100715	chromoarm	775	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	15968144	15968302	AT3TE64620	.	-	ARNOLDY1	MuDR	DNA	158	short	237	high	2101023	chromoarm	457	no-CHH	no-RdDM	.	.	.	.	.
Chr3	15975279	15975334	AT3TE64650	.	-	HELITRONY1D	Helitron	RC	55	tiny	756	high	2108158	chromoarm	260	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	15975334	15975614	AT3TE64655	.	-	HELITRONY3	Helitron	RC	280	short	1399	high	2108213	chromoarm	315	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	15975614	15975682	AT3TE64660	.	+	ATHPOGON3	Pogo	DNA	68	tiny	118	medium	2108493	chromoarm	595	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	15975682	15976474	AT3TE64665	.	+	ATHPOGON3	Pogo	DNA	792	short	118	medium	2108561	chromoarm	663	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	15976474	15976779	AT3TE64670	.	-	ATREP10B	Helitron	RC	305	short	491	high	2109353	chromoarm	1455	no-RdDM	no-CHH	.	.	.	.	.
Chr3	15976779	15979108	AT3TE64675	.	-	ATREP10B	Helitron	RC	2329	medium	491	high	2109658	chromoarm	1760	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15979108	15979767	AT3TE64680	.	-	ATREP10A	Helitron	RC	659	short	279	high	2111987	chromoarm	3583	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	15979767	15979849	AT3TE64685	.	+	ATREP11	Helitron	RC	82	tiny	841	high	2112646	chromoarm	3501	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	15980568	15980697	AT3TE64690	.	-	ATCOPIA49	Copia	LTR	129	short	34	low	2113447	chromoarm	2653	no-CHH	no-CHH	.	.	.	.	.
Chr3	15981190	15981227	AT3TE64695	.	+	ATREP4	Helitron	RC	37	tiny	832	high	2114069	chromoarm	2123	no-CHH	no-CHH	.	.	.	.	.
Chr3	15981227	15981927	AT3TE64700	.	+	ATREP4	Helitron	RC	700	short	832	high	2114106	chromoarm	1423	no-CHH	no-CHH	.	.	.	.	.
Chr3	15981927	15983267	AT3TE64705	.	+	ATREP11	Helitron	RC	1340	short	841	high	2114806	chromoarm	83	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	15983267	15983290	AT3TE64710	.	+	HELITRONY1C	Helitron	RC	23	tiny	120	medium	2116146	chromoarm	60	no-CHH	no-CHH	.	.	.	.	.
Chr3	15983290	15983338	AT3TE64715	.	+	ATREP5	Helitron	RC	48	tiny	624	high	2116169	chromoarm	12	no-CHH	no-CHH	.	.	.	.	.
Chr3	15989150	15989336	AT3TE64730	.	-	RathE1_cons	.	RathE1_cons	187	short	213	high	2122028	chromoarm	308	.	.	.	.	.	.	.
Chr3	15991965	15993199	AT3TE64740	.	-	ATREP3	Helitron	RC	1234	short	1439	high	2124844	chromoarm	219	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	15993199	15993235	AT3TE64745	.	-	ATREP3	Helitron	RC	36	tiny	1439	high	2126078	chromoarm	183	no-CHH	no-CHH	.	.	.	.	.
Chr3	15996351	15996947	AT3TE64755	.	-	ATCOPIA96	Copia	LTR	596	short	16	low	2129230	chromoarm	858	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	15996986	15997119	AT3TE64760	.	+	ATCOPIA96	Copia	LTR	133	short	16	low	2129865	chromoarm	1493	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	15997119	15997189	AT3TE64765	.	-	ATCOPIA96	Copia	LTR	70	tiny	16	low	2129998	chromoarm	1626	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	15998597	16000147	AT3TE64770	.	-	ATCOPIA96	Copia	LTR	1550	short	16	low	2131476	chromoarm	785	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	16002281	16003349	AT3TE64775	.	-	HELITRONY1E	Helitron	RC	1068	short	447	high	2135160	chromoarm	257	no-CHH	no-CHH	.	.	.	.	.
Chr3	16003349	16004911	AT3TE64780	.	-	ATREP15	Helitron	RC	1562	short	1003	high	2136228	chromoarm	1325	no-CHH	no-CHH	.	.	.	.	.
Chr3	16005265	16005693	AT3TE64785	.	+	ATHATN1	HAT	DNA	428	short	69	medium	2138144	chromoarm	1060	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	16005693	16006166	AT3TE64790	.	+	ATREP10B	Helitron	RC	473	short	491	high	2138572	chromoarm	587	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	16020563	16020645	AT3TE64850	.	+	DT1	Mariner	DNA	82	tiny	123	medium	2153442	chromoarm	690	no-CHH	no-CHH	.	.	.	.	.
Chr3	16021860	16021983	AT3TE64855	.	+	ATHPOGON1	Pogo	DNA	123	short	174	medium	2154739	chromoarm	852	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	16026879	16027311	AT3TE64870	.	+	BRODYAGA1A	MuDR	DNA	432	short	586	high	2159758	chromoarm	2392	no-CHH	no-CHH	.	.	.	.	.
Chr3	16028247	16029034	AT3TE64875	.	-	META1	Copia	LTR	787	short	138	medium	2161126	chromoarm	1480	no-CHH	no-CHH	.	.	.	.	.
Chr3	16035210	16035780	AT3TE64900	.	-	ATREP10B	Helitron	RC	570	short	491	high	2168089	chromoarm	63	no-CHH	no-CHH	.	.	.	.	.
Chr3	16035780	16035931	AT3TE64905	.	-	VANDAL1	MuDR	DNA	151	short	80	medium	2168659	chromoarm	322	no-CHH	no-CHH	.	.	.	.	.
Chr3	16037112	16037995	AT3TE64910	.	-	ATREP11	Helitron	RC	883	short	841	high	2169991	chromoarm	298	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	16039019	16041155	AT3TE64915	.	-	META1	Copia	LTR	2136	medium	138	medium	2171898	chromoarm	2205	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	16041155	16043667	AT3TE64920	.	+	HELITRONY1E	Helitron	RC	2512	medium	447	high	2174034	chromoarm	2663	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	16041165	16042283	AT3TE64925	.	-	HELITRONY1E	Helitron	RC	1118	short	447	high	2174044	chromoarm	4047	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	16043667	16043696	AT3TE64930	.	+	ATREP10A	Helitron	RC	29	tiny	279	high	2176546	chromoarm	2634	no-CHH	RDR6-RdDM	.	.	.	.	.
Chr3	16044297	16044625	AT3TE64935	.	-	SIMPLEGUY1	Harbinger	DNA	328	short	116	medium	2177176	chromoarm	1705	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	16050414	16050536	AT3TE64950	.	+	ATGP8	Gypsy	LTR	122	short	92	medium	2183293	chromoarm	746	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	16051818	16052282	AT3TE64955	.	-	ATLINE1_5	L1	LINE	464	short	91	medium	2184697	chromoarm	2150	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16052282	16052521	AT3TE64960	.	+	RP1_AT	.	DNA	239	short	87	medium	2185161	chromoarm	2614	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16052573	16052990	AT3TE64965	.	+	ATTIRX1A	.	DNA	417	short	63	medium	2185452	chromoarm	2905	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	16056315	16056900	AT3TE64975	.	+	ATLINE1_6	L1	LINE	585	short	129	medium	2189194	chromoarm	6647	no-CHH	no-CHH	ExpressedAndAnnotated	16056261,16056327	16056900,16056900	+,+	transcript_id-"493c3107-fef8-4dec-9bf1-6914ff429c3a|4",transcript_id-"df321658-0be4-4165-aeb3-ca8b0aa6e7c8|6"
Chr3	16057401	16057478	AT3TE64980	.	-	AT9NMU1	MuDR	DNA	77	tiny	45	low	2190280	chromoarm	7733	no-CHH	no-CHH	.	.	.	.	.
Chr3	16057712	16060181	AT3TE64985	.	+	ATLINEIII	L1	LINE	2469	medium	196	medium	2190591	chromoarm	7211	no-CHH	no-CHH	.	.	.	.	.
Chr3	16060974	16061157	AT3TE64990	.	+	HELITRONY3	Helitron	RC	183	short	1399	high	2193853	chromoarm	6235	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16061158	16061186	AT3TE64995	.	+	ATREP11	Helitron	RC	29	tiny	841	high	2194036	chromoarm	6206	.	.	.	.	.	.	.
Chr3	16061187	16061209	AT3TE65000	.	+	BRODYAGA2	MuDR	DNA	23	tiny	525	high	2194065	chromoarm	6183	.	.	.	.	.	.	.
Chr3	16061209	16064128	AT3TE65005	.	-	HELITRONY1E	Helitron	RC	2919	medium	447	high	2194088	chromoarm	3264	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16061468	16062877	AT3TE65010	.	-	HELITRONY1E	Helitron	RC	1409	short	447	high	2194347	chromoarm	4515	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	16064128	16067069	AT3TE65015	.	-	META1	Copia	LTR	2941	medium	138	medium	2197007	chromoarm	323	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	16069910	16069993	AT3TE65025	.	+	VANDAL13	MuDR	DNA	84	tiny	38	low	2202788	chromoarm	988	.	.	.	.	.	.	.
Chr3	16071181	16071662	AT3TE65030	.	-	BRODYAGA1A	MuDR	DNA	481	short	586	high	2204060	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16074923	16075333	AT3TE65040	.	-	ATREP1	Helitron	RC	410	short	498	high	2207802	chromoarm	345	no-CHH	no-CHH	.	.	.	.	.
Chr3	16076528	16076611	AT3TE65045	.	-	TSCL	.	LINE?	83	tiny	81	medium	2209407	chromoarm	1950	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	16076856	16077377	AT3TE65050	.	-	ATREP11	Helitron	RC	521	short	841	high	2209735	chromoarm	2278	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	16077724	16078200	AT3TE65055	.	-	ATHATN3	HAT	DNA	476	short	70	medium	2210603	chromoarm	1914	no-CHH	no-CHH	.	.	.	.	.
Chr3	16078200	16078222	AT3TE65060	.	+	ATREP10A	Helitron	RC	22	tiny	279	high	2211079	chromoarm	1892	no-CHH	no-CHH	.	.	.	.	.
Chr3	16078963	16079586	AT3TE65065	.	+	ATCOPIA95	Copia	LTR	623	short	72	medium	2211842	chromoarm	528	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16083056	16083480	AT3TE65075	.	-	ATREP11	Helitron	RC	424	short	841	high	2215935	chromoarm	1334	no-RdDM	no-CHH	.	.	.	.	.
Chr3	16083849	16084036	AT3TE65080	.	+	TAG2	HAT	DNA	187	short	86	medium	2216728	chromoarm	2127	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	16085004	16085135	AT3TE65085	.	-	ARNOLDY1	MuDR	DNA	131	short	237	high	2217883	chromoarm	3282	PolIV-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	16085135	16085723	AT3TE65090	.	+	ATREP4	Helitron	RC	588	short	832	high	2218014	chromoarm	3413	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	16085723	16085818	AT3TE65095	.	+	ATREP4	Helitron	RC	95	tiny	832	high	2218602	chromoarm	4001	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	16085818	16087738	AT3TE65100	.	-	ARNOLD1	MuDR	DNA	1920	short	39	low	2218697	chromoarm	3139	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	16087584,16087589	16085794,16085830	-,-	transcript_id-"69c26f2b-28b3-478c-b2c4-0f10d73bdcc1|4",transcript_id-"5a3f0b58-30f2-4400-a224-2b2237d1b498|4"
Chr3	16087747	16087909	AT3TE65105	.	-	ATREP5	Helitron	RC	162	short	624	high	2220626	chromoarm	2968	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	16087909	16089348	AT3TE65110	.	+	ATREP10A	Helitron	RC	1439	short	279	high	2220788	chromoarm	1529	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16089348	16089529	AT3TE65115	.	+	ATREP10D	Helitron	RC	181	short	1295	high	2222227	chromoarm	1348	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16090110	16090132	AT3TE65120	.	-	HARBINGER	Harbinger	DNA	22	tiny	90	medium	2222989	chromoarm	745	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16090132	16090457	AT3TE65125	.	-	SIMPLEGUY1	Harbinger	DNA	325	short	116	medium	2223011	chromoarm	420	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16092040	16092131	AT3TE65130	.	-	HARBINGER	Harbinger	DNA	91	tiny	90	medium	2224919	chromoarm	0	no-CHH	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	16099100	16099146	AT3TE65160	.	-	HELITRONY1A	Helitron	RC	46	tiny	271	high	2231979	chromoarm	714	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16099146	16099168	AT3TE65165	.	-	HELITRONY3	Helitron	RC	22	tiny	1399	high	2232025	chromoarm	760	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	16099168	16100856	AT3TE65170	.	-	HELITRONY1E	Helitron	RC	1688	short	447	high	2232047	chromoarm	782	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	16100856	16106213	AT3TE65175	.	-	ARNOLD2	MuDR	DNA	5357	long	68	medium	2233735	chromoarm	2037	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	16101036,16101036,16101036,16101036	16103229,16106170,16106193,16106245	+,+,+,+	transcript_id-"d86e3f1e-c8da-41d1-b0dc-04e0ada50e24|24",transcript_id-"3e90dd53-7586-410c-9b24-947adee32246|3",transcript_id-"23b004c0-8d25-4e44-91d6-543e65a6eda9|3",transcript_id-"0f5ad992-c979-4e40-aa8b-c89c0fea0547|3"
Chr3	16106213	16107834	AT3TE65180	.	+	ATREP4	Helitron	RC	1621	short	832	high	2239092	chromoarm	416	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	16107834	16107982	AT3TE65185	.	+	ATREP3	Helitron	RC	148	short	1439	high	2240713	chromoarm	268	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	16111947	16112193	AT3TE65195	.	-	ATHATN8	HAT	DNA	246	short	15	low	2244826	chromoarm	808	no-CHH	no-CHH	.	.	.	.	.
Chr3	16113240	16113688	AT3TE65200	.	-	HELITRONY1D	Helitron	RC	448	short	756	high	2246119	chromoarm	2101	PolIV-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	16113688	16114096	AT3TE65205	.	-	ATREP6	Helitron	RC	408	short	181	medium	2246567	chromoarm	1929	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16125367	16125775	AT3TE65250	.	+	HELITRONY3	Helitron	RC	408	short	1399	high	2258246	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	16129562	16129628	AT3TE65260	.	+	HELITRONY1E	Helitron	RC	66	tiny	447	high	2262441	chromoarm	1793	no-CHH	no-CHH	.	.	.	.	.
Chr3	16129628	16130439	AT3TE65265	.	-	HELITRONY3	Helitron	RC	811	short	1399	high	2262507	chromoarm	1859	no-CHH	no-CHH	.	.	.	.	.
Chr3	16130439	16130523	AT3TE65270	.	+	ATREP15	Helitron	RC	84	tiny	1003	high	2263318	chromoarm	2670	no-CHH	no-CHH	.	.	.	.	.
Chr3	16130523	16130620	AT3TE65275	.	+	ATREP9	Helitron	RC	97	tiny	201	high	2263402	chromoarm	2754	no-CHH	no-CHH	.	.	.	.	.
Chr3	16131236	16131257	AT3TE65280	.	+	HELITRONY1A	Helitron	RC	21	tiny	271	high	2264115	chromoarm	3467	no-CHH	no-CHH	.	.	.	.	.
Chr3	16131257	16131369	AT3TE65285	.	+	ATREP10A	Helitron	RC	112	short	279	high	2264136	chromoarm	3488	no-CHH	no-CHH	.	.	.	.	.
Chr3	16131369	16131485	AT3TE65290	.	-	ATREP5	Helitron	RC	116	short	624	high	2264248	chromoarm	3600	no-CHH	no-CHH	.	.	.	.	.
Chr3	16131485	16132678	AT3TE65295	.	+	ATREP5	Helitron	RC	1193	short	624	high	2264364	chromoarm	3716	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	16132686	16132713	AT3TE65300	.	-	ATREP10A	Helitron	RC	27	tiny	279	high	2265565	chromoarm	4917	no-CHH	no-CHH	.	.	.	.	.
Chr3	16136375	16136928	AT3TE65310	.	+	HELITRONY1D	Helitron	RC	553	short	756	high	2269254	chromoarm	1131	no-CHH	no-CHH	.	.	.	.	.
Chr3	16140345	16140938	AT3TE65320	.	-	HELITRONY1D	Helitron	RC	593	short	756	high	2273224	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	16140938	16141017	AT3TE65325	.	+	ATDNA2T9C	MuDR	DNA	79	tiny	242	high	2273817	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	16141471	16141986	AT3TE65330	.	+	ARNOLDY2	MuDR	DNA	515	short	288	high	2274350	chromoarm	62	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	16141986	16142284	AT3TE65335	.	-	HELITRONY3	Helitron	RC	298	short	1399	high	2274865	chromoarm	577	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	16142284	16142682	AT3TE65340	.	+	BRODYAGA1A	MuDR	DNA	398	short	586	high	2275163	chromoarm	875	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16142682	16142709	AT3TE65345	.	+	ATDNA2T9A	MuDR	DNA	27	tiny	48	low	2275561	chromoarm	1273	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	16142709	16142754	AT3TE65350	.	-	ATREP11	Helitron	RC	45	tiny	841	high	2275588	chromoarm	1300	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr3	16143026	16143075	AT3TE65355	.	-	ARNOLD3	MuDR	DNA	49	tiny	45	low	2275905	chromoarm	1617	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16143075	16143350	AT3TE65360	.	+	ARNOLDY2	MuDR	DNA	275	short	288	high	2275954	chromoarm	1666	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	16143356	16143502	AT3TE65365	.	-	ARNOLD2	MuDR	DNA	146	short	68	medium	2276235	chromoarm	1947	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	16143503	16144282	AT3TE65370	.	+	BOMZH1	MuDR	DNA	779	short	28	low	2276382	chromoarm	2094	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	16145197	16145493	AT3TE65375	.	+	ATHAT3	HAT	DNA	296	short	23	low	2278076	chromoarm	3788	no-CHH	no-CHH	.	.	.	.	.
Chr3	16146373	16146480	AT3TE65380	.	+	ATDNA12T3_2	.	DNA	107	short	660	high	2279252	chromoarm	4696	no-RdDM	no-CHH	.	.	.	.	.
Chr3	16146754	16146866	AT3TE65385	.	-	ATMUNX1	MuDR	DNA	112	short	155	medium	2279633	chromoarm	4310	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16147256	16147519	AT3TE65390	.	+	HELITRON5	Helitron	RC	263	short	56	medium	2280135	chromoarm	3657	no-CHH	no-CHH	.	.	.	.	.
Chr3	16148205	16148537	AT3TE65395	.	-	HELITRONY2	Helitron	RC	332	short	198	medium	2281084	chromoarm	2639	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	16148543	16148748	AT3TE65400	.	+	ATLINE2	L1	LINE	205	short	138	medium	2281422	chromoarm	2428	no-CHH	no-CHH	.	.	.	.	.
Chr3	16149283	16149311	AT3TE65405	.	-	ATREP19	.	DNA	28	tiny	189	medium	2282162	chromoarm	1865	no-CHH	no-CHH	.	.	.	.	.
Chr3	16149311	16149408	AT3TE65410	.	-	ATREP11	Helitron	RC	97	tiny	841	high	2282190	chromoarm	1768	no-CHH	no-CHH	.	.	.	.	.
Chr3	16149408	16150229	AT3TE65415	.	+	ATREP10B	Helitron	RC	821	short	491	high	2282287	chromoarm	947	no-CHH	no-CHH	.	.	.	.	.
Chr3	16150229	16150344	AT3TE65420	.	+	ATCOPIA28	Copia	LTR	115	short	81	medium	2283108	chromoarm	832	no-CHH	no-CHH	.	.	.	.	.
Chr3	16152382	16152579	AT3TE65425	.	-	ATENSPM6	En-Spm	DNA	197	short	151	medium	2285261	chromoarm	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	16154549	16154612	AT3TE65430	.	-	VANDAL1N1	MuDR	DNA	63	tiny	52	medium	2287428	chromoarm	152	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	16154612	16155638	AT3TE65435	.	-	VANDAL1N1	MuDR	DNA	1026	short	52	medium	2287491	chromoarm	215	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16155638	16156190	AT3TE65440	.	-	VANDAL1N1	MuDR	DNA	552	short	52	medium	2288517	chromoarm	1241	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16156197	16156272	AT3TE65445	.	+	ATREP10D	Helitron	RC	75	tiny	1295	high	2289076	chromoarm	1800	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	16156272	16156294	AT3TE65450	.	-	VANDAL2N1	MuDR	DNA	22	tiny	51	medium	2289151	chromoarm	1875	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16156294	16156562	AT3TE65455	.	-	VANDAL2N1	MuDR	DNA	268	short	51	medium	2289173	chromoarm	1897	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	16156562	16158214	AT3TE65460	.	-	VANDAL1N1	MuDR	DNA	1652	short	52	medium	2289441	chromoarm	2165	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16158400	16158551	AT3TE65465	.	+	ATHILA4C	Gypsy	LTR	151	short	206	high	2291279	chromoarm	4003	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	16161770	16162031	AT3TE65475	.	-	ATCOPIA94	Copia	LTR	261	short	39	low	2294649	chromoarm	1951	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	16162031	16162502	AT3TE65480	.	-	ATHILA4D_LTR	Gypsy	LTR	471	short	106	medium	2294910	chromoarm	1480	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	16163500	16163531	AT3TE65485	.	+	ATHATN6	HAT	DNA	31	tiny	43	low	2296379	chromoarm	451	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	16163531	16163776	AT3TE65490	.	+	ATHATN6	HAT	DNA	245	short	43	low	2296410	chromoarm	206	no-CHH	no-CHH	.	.	.	.	.
Chr3	16169324	16170120	AT3TE65510	.	+	ATREP10D	Helitron	RC	796	short	1295	high	2302203	chromoarm	123	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16171806	16172119	AT3TE65515	.	-	ATREP10D	Helitron	RC	313	short	1295	high	2304685	chromoarm	2605	no-RdDM	no-CHH	.	.	.	.	.
Chr3	16172123	16173448	AT3TE65520	.	+	ATREP3	Helitron	RC	1325	short	1439	high	2305002	chromoarm	2922	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16175557	16180555	AT3TE65525	.	+	ATLINEIII	L1	LINE	4998	medium	196	medium	2308436	chromoarm	6356	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	16180955	16181117	AT3TE65530	.	+	VANDAL20	MuDR	DNA	162	short	51	medium	2313834	chromoarm	7148	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	16181877	16182004	AT3TE65535	.	+	VANDAL20	MuDR	DNA	127	short	51	medium	2314756	chromoarm	6261	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	16182242	16182606	AT3TE65540	.	-	HELITRONY1D	Helitron	RC	364	short	756	high	2315121	chromoarm	5659	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16182695	16182824	AT3TE65545	.	+	VANDAL20	MuDR	DNA	129	short	51	medium	2315574	chromoarm	5441	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16183948	16184168	AT3TE65550	.	+	ATHATN2	HAT	DNA	220	short	46	low	2316827	chromoarm	4097	no-RdDM	no-CHH	.	.	.	.	.
Chr3	16186088	16186178	AT3TE65555	.	-	ATREP13	Helitron	RC	90	tiny	106	medium	2318967	chromoarm	2087	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	16187333	16187642	AT3TE65560	.	-	ATREP1	Helitron	RC	309	short	498	high	2320212	chromoarm	623	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16192726	16192852	AT3TE65580	.	+	ATCOPIA89	Copia	LTR	126	short	12	low	2325605	chromoarm	619	no-CHH	no-CHH	.	.	.	.	.
Chr3	16200261	16200353	AT3TE65610	.	+	HARBINGER	Harbinger	DNA	92	tiny	90	medium	2333140	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	16201299	16201639	AT3TE65615	.	+	SIMPLEGUY1	Harbinger	DNA	340	short	116	medium	2334178	chromoarm	889	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	16204482	16204615	AT3TE65625	.	-	ATMUNX1	MuDR	DNA	133	short	155	medium	2337361	chromoarm	4072	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16204731	16204986	AT3TE65630	.	+	HELITRONY3	Helitron	RC	256	short	1399	high	2337609	chromoarm	4320	.	.	.	.	.	.	.
Chr3	16204986	16206208	AT3TE65635	.	-	ARNOLDY1	MuDR	DNA	1222	short	237	high	2337865	chromoarm	4576	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16206208	16206243	AT3TE65640	.	+	HELITRONY1A	Helitron	RC	35	tiny	271	high	2339087	chromoarm	5798	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	16207003	16207351	AT3TE65645	.	+	ATTIR16T3A	.	DNA	348	short	106	medium	2339882	chromoarm	6593	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	16207539	16209058	AT3TE65650	.	-	Unassigned	.	Unassigned	1519	short	.	low	2340418	chromoarm	5905	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	16209677	16212238	AT3TE65655	.	-	ATLINEIII	L1	LINE	2561	medium	196	medium	2342556	chromoarm	2725	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	16212297	16212468	AT3TE65660	.	+	TAT1_ATH	Gypsy	LTR	171	short	87	medium	2345176	chromoarm	2495	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	16212468	16212614	AT3TE65665	.	-	ATREP5	Helitron	RC	146	short	624	high	2345347	chromoarm	2349	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	16212614	16214206	AT3TE65670	.	+	ATREP5	Helitron	RC	1592	short	624	high	2345493	chromoarm	757	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	16214207	16214251	AT3TE65675	.	+	ATREP11A	Helitron	RC	45	tiny	95	medium	2347085	chromoarm	712	.	.	.	.	.	.	.
Chr3	16221117	16221208	AT3TE65700	.	+	HARBINGER	Harbinger	DNA	91	tiny	90	medium	2353996	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	16221751	16221845	AT3TE65705	.	+	HARBINGER	Harbinger	DNA	94	tiny	90	medium	2354630	chromoarm	326	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16222447	16222650	AT3TE65710	.	-	HELITRONY3	Helitron	RC	203	short	1399	high	2355326	chromoarm	1022	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	16222650	16225512	AT3TE65715	.	+	HELITRONY1E	Helitron	RC	2862	medium	447	high	2355529	chromoarm	1225	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16225512	16225611	AT3TE65720	.	+	HELITRONY1E	Helitron	RC	99	tiny	447	high	2358391	chromoarm	1157	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	16225611	16226238	AT3TE65725	.	-	HELITRONY3	Helitron	RC	627	short	1399	high	2358490	chromoarm	530	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16234375	16234396	AT3TE65750	.	-	ATREP11	Helitron	RC	21	tiny	841	high	2367254	chromoarm	160	no-CHH	no-CHH	.	.	.	.	.
Chr3	16234396	16234583	AT3TE65755	.	-	ATREP2A	Helitron	RC	187	short	116	medium	2367275	chromoarm	181	no-CHH	no-CHH	.	.	.	.	.
Chr3	16234583	16235029	AT3TE65760	.	-	ATREP2	Helitron	RC	446	short	164	medium	2367462	chromoarm	368	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16235029	16235589	AT3TE65765	.	-	ATHPOGO	Pogo	DNA	560	short	25	low	2367908	chromoarm	753	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16235589	16235925	AT3TE65770	.	+	ATREP10D	Helitron	RC	336	short	1295	high	2368468	chromoarm	417	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16237898	16238327	AT3TE65775	.	-	ARNOLD2	MuDR	DNA	429	short	68	medium	2370777	chromoarm	162	no-CHH	no-CHH	.	.	.	.	.
Chr3	16238328	16238356	AT3TE65780	.	-	ATREP5	Helitron	RC	29	tiny	624	high	2371206	chromoarm	591	.	.	.	.	.	.	.
Chr3	16238356	16238631	AT3TE65785	.	-	BOMZH1	MuDR	DNA	275	short	28	low	2371235	chromoarm	620	no-CHH	no-CHH	.	.	.	.	.
Chr3	16239063	16239223	AT3TE65790	.	-	ATMUN2	MuDR	DNA	160	short	6	low	2371942	chromoarm	1327	no-CHH	no-CHH	.	.	.	.	.
Chr3	16239947	16240014	AT3TE65795	.	-	ATREP6	Helitron	RC	67	tiny	181	medium	2372826	chromoarm	2211	no-CHH	no-CHH	.	.	.	.	.
Chr3	16240014	16240119	AT3TE65800	.	+	ATHPOGON1	Pogo	DNA	105	short	174	medium	2372893	chromoarm	2278	RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	16240122	16240797	AT3TE65805	.	+	ATHPOGON1	Pogo	DNA	675	short	174	medium	2373001	chromoarm	2386	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	16240797	16241147	AT3TE65810	.	-	VANDAL18NB	MuDR	DNA	350	short	19	low	2373676	chromoarm	3045	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	16241148	16241202	AT3TE65815	.	-	VANDAL18NB	MuDR	DNA	55	tiny	19	low	2374026	chromoarm	2990	.	.	.	.	.	.	.
Chr3	16241202	16241858	AT3TE65820	.	-	VANDAL18NA	MuDR	DNA	656	short	24	low	2374081	chromoarm	2334	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16241858	16242026	AT3TE65825	.	-	VANDAL18NA	MuDR	DNA	168	short	24	low	2374737	chromoarm	2166	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr3	16246159	16248815	AT3TE65835	.	+	TA11	L1	LINE	2656	medium	157	medium	2379038	chromoarm	1811	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	16248815	16249321	AT3TE65840	.	+	ATLINE1_4	L1	LINE	506	short	102	medium	2381694	chromoarm	2620	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	16253724	16254565	AT3TE65850	.	-	ATREP10D	Helitron	RC	841	short	1295	high	2386603	chromoarm	268	no-CHH	no-CHH	.	.	.	.	.
Chr3	16255100	16255675	AT3TE65855	.	+	ATHATN7	HAT	DNA	575	short	71	medium	2387979	chromoarm	1644	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	16257867	16257925	AT3TE65860	.	-	ATREP10B	Helitron	RC	58	tiny	491	high	2390746	chromoarm	2279	no-CHH	no-CHH	.	.	.	.	.
Chr3	16257925	16258166	AT3TE65865	.	+	ATREP4	Helitron	RC	241	short	832	high	2390804	chromoarm	2038	no-CHH	no-CHH	.	.	.	.	.
Chr3	16258166	16258664	AT3TE65870	.	-	ATREP10D	Helitron	RC	498	short	1295	high	2391045	chromoarm	1540	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	16258664	16271600	AT3TE65875	.	+	ATREP10D	Helitron	RC	12936	long	1295	high	2391543	chromoarm	0	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	16259534	16259567	AT3TE65880	.	-	ATREP10D	Helitron	RC	33	tiny	1295	high	2392413	chromoarm	0	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	16266386	16266584	AT3TE65910	.	-	HELITRONY3	Helitron	RC	198	short	1399	high	2399265	chromoarm	72	no-CHH	no-CHH	.	.	.	.	.
Chr3	16266584	16267220	AT3TE65915	.	-	ATREP13	Helitron	RC	636	short	106	medium	2399463	chromoarm	270	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16267220	16267305	AT3TE65920	.	+	ATREP15	Helitron	RC	85	tiny	1003	high	2400099	chromoarm	906	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	16267305	16268465	AT3TE65925	.	+	ATREP15	Helitron	RC	1160	short	1003	high	2400184	chromoarm	991	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	16268465	16270066	AT3TE65930	.	+	ARNOLDY2	MuDR	DNA	1601	short	288	high	2401344	chromoarm	1692	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16274284	16274430	AT3TE65940	.	-	ATREP10A	Helitron	RC	146	short	279	high	2407163	chromoarm	1251	no-RdDM	no-CHH	.	.	.	.	.
Chr3	16274431	16275009	AT3TE65945	.	+	ATHATN2	HAT	DNA	578	short	46	low	2407310	chromoarm	1398	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	16275195	16276818	AT3TE65950	.	-	ATREP11	Helitron	RC	1623	short	841	high	2408074	chromoarm	2162	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16276818	16277153	AT3TE65955	.	-	ATREP11	Helitron	RC	335	short	841	high	2409697	chromoarm	3785	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16277153	16277361	AT3TE65960	.	+	ATREP15	Helitron	RC	208	short	1003	high	2410032	chromoarm	4120	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16277374	16277470	AT3TE65965	.	+	ATREP9	Helitron	RC	96	tiny	201	high	2410253	chromoarm	4341	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	16278797	16280473	AT3TE65970	.	+	ATREP11	Helitron	RC	1676	short	841	high	2411676	chromoarm	5414	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16280474	16280501	AT3TE65975	.	+	ATREP11	Helitron	RC	28	tiny	841	high	2413352	chromoarm	5386	.	.	.	.	.	.	.
Chr3	16280501	16280559	AT3TE65980	.	+	HELITRONY1D	Helitron	RC	58	tiny	756	high	2413380	chromoarm	5328	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	16280559	16281008	AT3TE65985	.	+	ATREP10D	Helitron	RC	449	short	1295	high	2413438	chromoarm	4879	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16281008	16282065	AT3TE65990	.	+	ATREP1	Helitron	RC	1057	short	498	high	2413887	chromoarm	3822	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	16282987	16283144	AT3TE65995	.	-	ATCOPIA15	Copia	LTR	157	short	14	low	2415866	chromoarm	2743	no-CHH	no-CHH	.	.	.	.	.
Chr3	16285335	16285526	AT3TE66000	.	-	ATLINE1A	L1	LINE	192	short	289	high	2418213	chromoarm	361	.	.	.	.	.	.	.
Chr3	16293537	16294108	AT3TE66030	.	-	ENDOVIR1	Copia	LTR	571	short	15	low	2426416	chromoarm	1419	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	16301842	16303089	AT3TE66060	.	+	TSCL	.	LINE?	1247	short	81	medium	2434721	chromoarm	0	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	16307484	16307971	AT3TE66070	.	-	ATREP19	.	DNA	487	short	189	medium	2440363	chromoarm	1267	no-CHH	no-CHH	.	.	.	.	.
Chr3	16307971	16308043	AT3TE66075	.	-	BRODYAGA2	MuDR	DNA	72	tiny	525	high	2440850	chromoarm	1754	no-CHH	no-CHH	.	.	.	.	.
Chr3	16315977	16316358	AT3TE66100	.	-	ATLINE1_4	L1	LINE	381	short	102	medium	2448856	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	16320643	16321600	AT3TE66110	.	-	ATREP3	Helitron	RC	957	short	1439	high	2453522	chromoarm	23	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	16321600	16321632	AT3TE66115	.	+	ATREP10D	Helitron	RC	32	tiny	1295	high	2454479	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16324003	16325292	AT3TE66125	.	+	HELITRONY1D	Helitron	RC	1289	short	756	high	2456882	chromoarm	747	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	16325292	16325693	AT3TE66130	.	+	HELITRONY1D	Helitron	RC	401	short	756	high	2458171	chromoarm	346	no-RdDM	no-CHH	.	.	.	.	.
Chr3	16330980	16331801	AT3TE66150	.	+	ATHAT1	HAT	DNA	821	short	105	medium	2463859	chromoarm	715	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	16331801	16331841	AT3TE66155	.	+	BRODYAGA1	MuDR	DNA	40	tiny	251	high	2464680	chromoarm	1536	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	16331841	16333031	AT3TE66160	.	-	BRODYAGA1	MuDR	DNA	1190	short	251	high	2464720	chromoarm	1576	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16333031	16333401	AT3TE66165	.	-	BRODYAGA1	MuDR	DNA	370	short	251	high	2465910	chromoarm	2766	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16333401	16333556	AT3TE66170	.	+	SIMPLEHAT1	HAT	DNA	155	short	56	medium	2466280	chromoarm	3136	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16333758	16342025	AT3TE66175	.	+	ATGP1	Gypsy	LTR	8267	long	144	medium	2466637	chromoarm	1307	no-RdDM	no-RdDM	ExpressedAndAnnotated	16340995	16341930	+	transcript_id-"e9fe0d9f-a2bd-4080-9713-39601ea58af6|10"
Chr3	16346592	16346773	AT3TE66185	.	+	ATREP11	Helitron	RC	181	short	841	high	2479471	chromoarm	565	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	16347460	16348322	AT3TE66190	.	+	ATREP15	Helitron	RC	862	short	1003	high	2480339	chromoarm	1433	no-CHH	no-CHH	.	.	.	.	.
Chr3	16352031	16352522	AT3TE66200	.	-	ATREP11	Helitron	RC	491	short	841	high	2484910	chromoarm	594	no-CHH	no-CHH	.	.	.	.	.
Chr3	16352522	16352543	AT3TE66205	.	+	ATIS112A	Harbinger	DNA	21	tiny	173	medium	2485401	chromoarm	1085	no-CHH	no-CHH	.	.	.	.	.
Chr3	16353098	16353169	AT3TE66210	.	-	HELITRONY3	Helitron	RC	71	tiny	1399	high	2485977	chromoarm	1661	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	16353169	16354415	AT3TE66215	.	-	SIMPLEHAT2	HAT	DNA	1246	short	73	medium	2486048	chromoarm	1732	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	16354415	16354540	AT3TE66220	.	-	HELITRONY3	Helitron	RC	125	short	1399	high	2487294	chromoarm	2978	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	16354541	16355094	AT3TE66225	.	-	HELITRONY1B	Helitron	RC	554	short	414	high	2487419	chromoarm	3103	.	.	.	.	.	.	.
Chr3	16355094	16356727	AT3TE66230	.	-	ATREP18	.	DNA	1633	short	391	high	2487973	chromoarm	1768	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	16357159	16357337	AT3TE66235	.	-	ATDNAI27T9A	MuDR	DNA	178	short	116	medium	2490038	chromoarm	1158	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16357472	16358092	AT3TE66240	.	+	HELITRONY3	Helitron	RC	620	short	1399	high	2490351	chromoarm	403	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16358092	16358162	AT3TE66245	.	+	ATREP3	Helitron	RC	70	tiny	1439	high	2490971	chromoarm	333	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	16358416	16358532	AT3TE66250	.	-	ATCOPIA24	Copia	LTR	116	short	27	low	2491295	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	16365111	16366212	AT3TE66280	.	-	ATREP15	Helitron	RC	1101	short	1003	high	2497990	chromoarm	700	no-CHH	no-CHH	.	.	.	.	.
Chr3	16365289	16365617	AT3TE66285	.	+	DT1	Mariner	DNA	328	short	123	medium	2498168	chromoarm	878	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	16366212	16366427	AT3TE66290	.	+	ATREP10D	Helitron	RC	215	short	1295	high	2499091	chromoarm	1801	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	16367988	16368241	AT3TE66295	.	-	ATTIRTA1	Tc1	DNA	253	short	95	medium	2500867	chromoarm	648	no-CHH	no-CHH	.	.	.	.	.
Chr3	16369623	16369943	AT3TE66300	.	+	META1	Copia	LTR	320	short	138	medium	2502502	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	16376909	16377104	AT3TE66330	.	+	ATDNAI27T9C	MuDR	DNA	195	short	108	medium	2509788	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	16377626	16377731	AT3TE66335	.	+	ATHAT1	HAT	DNA	105	short	105	medium	2510505	chromoarm	695	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	16378682	16379155	AT3TE66340	.	-	BRODYAGA1A	MuDR	DNA	473	short	586	high	2511561	chromoarm	533	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	16391771	16391865	AT3TE66390	.	-	RathE1_cons	.	RathE1_cons	94	tiny	213	high	2524650	chromoarm	198	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	16395677	16395880	AT3TE66400	.	+	RathE3_cons	.	RathE3_cons	203	short	104	medium	2528556	chromoarm	1098	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	16396170	16396651	AT3TE66405	.	-	ATCOPIA10	Copia	LTR	481	short	7	low	2529049	chromoarm	386	no-RdDM	no-CHH	.	.	.	.	.
Chr3	16404941	16405197	AT3TE66440	.	-	VANDAL8	MuDR	DNA	256	short	123	medium	2537820	chromoarm	269	no-CHH	no-CHH	.	.	.	.	.
Chr3	16405198	16405292	AT3TE66445	.	+	ATREP2	Helitron	RC	95	tiny	164	medium	2538076	chromoarm	525	.	.	.	.	.	.	.
Chr3	16405292	16406121	AT3TE66450	.	+	ATREP2	Helitron	RC	829	short	164	medium	2538171	chromoarm	620	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16406121	16406231	AT3TE66455	.	-	VANDAL18NB	MuDR	DNA	110	short	19	low	2539000	chromoarm	1449	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	16406231	16406588	AT3TE66460	.	+	ATREP15	Helitron	RC	357	short	1003	high	2539110	chromoarm	1559	no-CHH	no-CHH	.	.	.	.	.
Chr3	16407509	16407577	AT3TE66465	.	-	ATREP19	.	DNA	68	tiny	189	medium	2540388	chromoarm	1425	no-CHH	no-CHH	.	.	.	.	.
Chr3	16407577	16408500	AT3TE66470	.	-	ATREP11	Helitron	RC	923	short	841	high	2540456	chromoarm	502	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	16409327	16409892	AT3TE66475	.	-	HELITRONY3	Helitron	RC	565	short	1399	high	2542206	chromoarm	0	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	16409892	16409970	AT3TE66480	.	+	ATREP15	Helitron	RC	78	tiny	1003	high	2542771	chromoarm	282	no-CHH	no-CHH	.	.	.	.	.
Chr3	16410734	16410802	AT3TE66485	.	+	ATREP4	Helitron	RC	68	tiny	832	high	2543613	chromoarm	1124	no-CHH	no-CHH	.	.	.	.	.
Chr3	16410802	16410845	AT3TE66490	.	-	HELITRONY3	Helitron	RC	43	tiny	1399	high	2543681	chromoarm	1192	no-CHH	no-CHH	.	.	.	.	.
Chr3	16410845	16412148	AT3TE66495	.	+	ATREP11	Helitron	RC	1303	short	841	high	2543724	chromoarm	1235	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	16412148	16412199	AT3TE66500	.	-	ATREP10D	Helitron	RC	51	tiny	1295	high	2545027	chromoarm	1661	no-CHH	no-CHH	.	.	.	.	.
Chr3	16412937	16413320	AT3TE66505	.	-	ATHATN4	HAT	DNA	383	short	56	medium	2545816	chromoarm	540	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	16415294	16415349	AT3TE66510	.	-	ATREP4	Helitron	RC	55	tiny	832	high	2548173	chromoarm	160	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	16415349	16416015	AT3TE66515	.	+	HELITRONY3	Helitron	RC	666	short	1399	high	2548228	chromoarm	215	no-CHH	no-CHH	.	.	.	.	.
Chr3	16416434	16416514	AT3TE66520	.	-	ARNOLDY2	MuDR	DNA	80	tiny	288	high	2549313	chromoarm	1300	no-CHH	no-CHH	.	.	.	.	.
Chr3	16416514	16419640	AT3TE66525	.	+	ARNOLDY2	MuDR	DNA	3126	medium	288	high	2549393	chromoarm	1380	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	16419640	16420483	AT3TE66530	.	+	ATREP3	Helitron	RC	843	short	1439	high	2552519	chromoarm	561	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	16420483	16420530	AT3TE66535	.	+	HELITRONY1E	Helitron	RC	47	tiny	447	high	2553362	chromoarm	514	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	16421398	16422091	AT3TE66540	.	+	HELITRONY3	Helitron	RC	693	short	1399	high	2554277	chromoarm	112	no-CHH	no-CHH	.	.	.	.	.
Chr3	16422091	16423222	AT3TE66545	.	-	ATREP5	Helitron	RC	1131	short	624	high	2554970	chromoarm	805	no-CHH	no-CHH	.	.	.	.	.
Chr3	16423222	16423542	AT3TE66550	.	-	ATREP10D	Helitron	RC	320	short	1295	high	2556101	chromoarm	1936	no-CHH	no-CHH	.	.	.	.	.
Chr3	16423542	16423573	AT3TE66555	.	+	ATREP1	Helitron	RC	31	tiny	498	high	2556421	chromoarm	2256	no-CHH	no-CHH	.	.	.	.	.
Chr3	16424569	16424664	AT3TE66560	.	+	HELITRONY1D	Helitron	RC	95	tiny	756	high	2557448	chromoarm	3130	no-CHH	no-CHH	.	.	.	.	.
Chr3	16430827	16430953	AT3TE66590	.	+	ATCOPIA30	Copia	LTR	126	short	33	low	2563706	chromoarm	1489	no-CHH	no-CHH	.	.	.	.	.
Chr3	16434891	16435078	AT3TE66600	.	-	HELITRON4	Helitron	RC	187	short	199	medium	2567770	chromoarm	43	no-CHH	no-CHH	.	.	.	.	.
Chr3	16435078	16435778	AT3TE66605	.	+	ARNOLDY1	MuDR	DNA	700	short	237	high	2567957	chromoarm	230	no-CHH	no-CHH	.	.	.	.	.
Chr3	16435982	16436331	AT3TE66610	.	-	ATLINE1_3A	L1	LINE	349	short	160	medium	2568861	chromoarm	1134	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	16436942	16437072	AT3TE66615	.	-	ATHILA4B_LTR	Gypsy	LTR	130	short	143	medium	2569821	chromoarm	2094	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	16436971	16437053	AT3TE66620	.	-	ATHILA4B_LTR	Gypsy	LTR	82	tiny	143	medium	2569850	chromoarm	2123	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	16437072	16437305	AT3TE66625	.	-	ATCOPIA93	Copia	LTR	233	short	10	low	2569951	chromoarm	2224	no-CHH	no-RdDM	.	.	.	.	.
Chr3	16437455	16438632	AT3TE66630	.	-	ATHILA4B_LTR	Gypsy	LTR	1177	short	143	medium	2570334	chromoarm	2390	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16438636	16438668	AT3TE66635	.	-	ATHILA4C	Gypsy	LTR	32	tiny	206	high	2571515	chromoarm	2354	no-CHH	no-CHH	.	.	.	.	.
Chr3	16439042	16439393	AT3TE66640	.	-	ATLINE2	L1	LINE	351	short	138	medium	2571921	chromoarm	1629	no-CHH	no-CHH	.	.	.	.	.
Chr3	16439960	16439986	AT3TE66645	.	-	ATDNAI27T9C	MuDR	DNA	26	tiny	108	medium	2572839	chromoarm	1036	no-CHH	no-CHH	.	.	.	.	.
Chr3	16439986	16440157	AT3TE66650	.	-	ATDNAI27T9C	MuDR	DNA	171	short	108	medium	2572865	chromoarm	865	no-CHH	no-CHH	.	.	.	.	.
Chr3	16440672	16440787	AT3TE66655	.	-	ATDNA1T9A	MuDR	DNA	115	short	36	low	2573551	chromoarm	235	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	16441324	16441487	AT3TE66660	.	-	RathE1_cons	.	RathE1_cons	163	short	213	high	2574203	chromoarm	0	PolIV-and-RDR6-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	16442081	16442180	AT3TE66665	.	-	LIMPET1	MuDR	DNA	99	tiny	116	medium	2574960	chromoarm	0	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	16442556	16442679	AT3TE66670	.	-	HELITRONY2	Helitron	RC	123	short	198	medium	2575435	chromoarm	458	no-CHH	no-CHH	.	.	.	.	.
Chr3	16443075	16443112	AT3TE66675	.	+	ATREP19	.	DNA	37	tiny	189	medium	2575954	chromoarm	977	no-CHH	no-CHH	.	.	.	.	.
Chr3	16443112	16444594	AT3TE66680	.	+	ATREP15	Helitron	RC	1482	short	1003	high	2575991	chromoarm	1014	no-CHH	no-CHH	.	.	.	.	.
Chr3	16445754	16446279	AT3TE66685	.	+	HELITRONY1D	Helitron	RC	525	short	756	high	2578633	chromoarm	1000	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	16450433	16450455	AT3TE66695	.	+	ATREP10D	Helitron	RC	22	tiny	1295	high	2583312	chromoarm	1755	no-CHH	no-CHH	.	.	.	.	.
Chr3	16450455	16450625	AT3TE66700	.	+	ATREP3	Helitron	RC	170	short	1439	high	2583334	chromoarm	1777	no-CHH	no-CHH	.	.	.	.	.
Chr3	16450625	16452724	AT3TE66705	.	+	ATREP3	Helitron	RC	2099	medium	1439	high	2583504	chromoarm	1947	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	16452724	16452763	AT3TE66710	.	+	HELITRONY1B	Helitron	RC	39	tiny	414	high	2585603	chromoarm	4046	no-CHH	no-CHH	.	.	.	.	.
Chr3	16453222	16453479	AT3TE66715	.	+	HELITRONY1E	Helitron	RC	257	short	447	high	2586101	chromoarm	4544	no-CHH	no-CHH	.	.	.	.	.
Chr3	16453479	16453883	AT3TE66720	.	+	DT1	Mariner	DNA	404	short	123	medium	2586358	chromoarm	4801	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16453883	16454738	AT3TE66725	.	-	ATREP11	Helitron	RC	855	short	841	high	2586762	chromoarm	5205	no-CHH	no-CHH	.	.	.	.	.
Chr3	16455893	16456385	AT3TE66730	.	+	ATLANTYS3	Gypsy	LTR	492	short	142	medium	2588772	chromoarm	3962	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	16457759	16457967	AT3TE66735	.	-	TAG1	HAT	DNA	208	short	28	low	2590638	chromoarm	2380	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	16463743	16464310	AT3TE66750	.	+	ATREP3	Helitron	RC	567	short	1439	high	2596622	chromoarm	2017	no-CHH	no-CHH	.	.	.	.	.
Chr3	16465475	16466309	AT3TE66755	.	-	ATDNA2T9C	MuDR	DNA	834	short	242	high	2598354	chromoarm	18	no-CHH	no-CHH	.	.	.	.	.
Chr3	16470339	16471533	AT3TE66765	.	+	ATREP15	Helitron	RC	1194	short	1003	high	2603218	chromoarm	72	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	16471533	16471586	AT3TE66770	.	+	ATREP11	Helitron	RC	53	tiny	841	high	2604412	chromoarm	19	no-CHH	no-RdDM	LowExpressed	.	.	.	.
Chr3	16479895	16480090	AT3TE66810	.	+	ATLINE1A	L1	LINE	195	short	289	high	2612774	chromoarm	509	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16484889	16485122	AT3TE66830	.	-	ATREP3	Helitron	RC	233	short	1439	high	2617768	chromoarm	1255	no-CHH	no-CHH	.	.	.	.	.
Chr3	16485122	16485281	AT3TE66835	.	-	ATREP2	Helitron	RC	159	short	164	medium	2618001	chromoarm	1096	no-CHH	no-CHH	.	.	.	.	.
Chr3	16485281	16485891	AT3TE66840	.	-	ATREP2	Helitron	RC	610	short	164	medium	2618160	chromoarm	486	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16488297	16488439	AT3TE66850	.	+	ATSINE4	.	SINE	142	short	98	medium	2621176	chromoarm	276	no-CHH	no-CHH	.	.	.	.	.
Chr3	16490460	16490526	AT3TE66855	.	+	ATSINE4	.	SINE	66	tiny	98	medium	2623339	chromoarm	225	no-CHH	no-CHH	.	.	.	.	.
Chr3	16495129	16496107	AT3TE66865	.	+	ATREP10B	Helitron	RC	978	short	491	high	2628008	chromoarm	677	no-CHH	no-CHH	.	.	.	.	.
Chr3	16497250	16497680	AT3TE66870	.	-	HELITRONY3	Helitron	RC	430	short	1399	high	2630129	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	16498551	16499159	AT3TE66875	.	+	ATLINE2	L1	LINE	608	short	138	medium	2631430	chromoarm	1261	no-RdDM	no-RdDM	ExpressedAndAnnotated	16497785,16497785	16498990,16499150	+,+	transcript_id-"e1079ca3-09a7-4686-b37f-14402b85837b|6",transcript_id-"8f099057-093c-4ea9-998d-b9da1609d318|5"
Chr3	16499591	16499784	AT3TE66880	.	-	ATCOPIA46	Copia	LTR	193	short	7	low	2632470	chromoarm	2301	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	16499784	16500838	AT3TE66885	.	-	ATRE1	Copia	LTR	1054	short	22	low	2632663	chromoarm	2494	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	16500838	16501839	AT3TE66890	.	+	ATGP2N	Gypsy	LTR	1001	short	54	medium	2633717	chromoarm	2808	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	16501853	16502250	AT3TE66895	.	-	ATCOPIA55	Copia	LTR	397	short	9	low	2634732	chromoarm	2397	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	16502392	16502941	AT3TE66900	.	-	ATCOPIA86	Copia	LTR	549	short	7	low	2635271	chromoarm	1706	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	16507247	16507386	AT3TE66910	.	+	SIMPLEHAT2	HAT	DNA	139	short	73	medium	2640126	chromoarm	389	no-CHH	no-CHH	.	.	.	.	.
Chr3	16507483	16508066	AT3TE66915	.	+	HELITRON4	Helitron	RC	583	short	199	medium	2640362	chromoarm	103	no-CHH	no-CHH	.	.	.	.	.
Chr3	16508863	16508943	AT3TE66920	.	+	TSCL	.	LINE?	80	tiny	81	medium	2641742	chromoarm	331	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	16509142	16509215	AT3TE66925	.	+	SIMPLEHAT2	HAT	DNA	73	tiny	73	medium	2642021	chromoarm	610	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	16509215	16509922	AT3TE66930	.	-	ARNOLDY2	MuDR	DNA	707	short	288	high	2642094	chromoarm	683	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	16510481	16512962	AT3TE66935	.	-	VANDAL2N1	MuDR	DNA	2481	medium	51	medium	2643360	chromoarm	0	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	16518489	16519641	AT3TE66950	.	-	ATREP3	Helitron	RC	1152	short	1439	high	2651368	chromoarm	967	no-CHH	no-CHH	.	.	.	.	.
Chr3	16519641	16520784	AT3TE66955	.	+	HELITRON2	Helitron	RC	1143	short	194	medium	2652520	chromoarm	2119	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16520784	16521759	AT3TE66960	.	-	HELITRONY1E	Helitron	RC	975	short	447	high	2653663	chromoarm	3262	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16521759	16522243	AT3TE66965	.	+	HELITRON2	Helitron	RC	484	short	194	medium	2654638	chromoarm	3193	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16530533	16531006	AT3TE67000	.	+	HELITRONY1D	Helitron	RC	473	short	756	high	2663412	chromoarm	172	no-CHH	no-CHH	.	.	.	.	.
Chr3	16531858	16532193	AT3TE67005	.	+	HELITRONY3	Helitron	RC	335	short	1399	high	2664737	chromoarm	182	no-CHH	no-CHH	.	.	.	.	.
Chr3	16532193	16532824	AT3TE67010	.	-	ATREP3	Helitron	RC	631	short	1439	high	2665072	chromoarm	517	no-CHH	no-CHH	.	.	.	.	.
Chr3	16534378	16535303	AT3TE67015	.	-	ATREP1	Helitron	RC	925	short	498	high	2667257	chromoarm	448	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16535303	16535446	AT3TE67020	.	-	HELITRONY1C	Helitron	RC	143	short	120	medium	2668182	chromoarm	1373	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	16535591	16535759	AT3TE67025	.	+	RathE1_cons	.	RathE1_cons	168	short	213	high	2668470	chromoarm	1661	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	16538288	16538546	AT3TE67035	.	-	ATSINE4	.	SINE	258	short	98	medium	2671167	chromoarm	56	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	16539299	16539821	AT3TE67040	.	+	BRODYAGA1A	MuDR	DNA	522	short	586	high	2672178	chromoarm	87	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16540103	16540350	AT3TE67045	.	-	BRODYAGA1A	MuDR	DNA	247	short	586	high	2672982	chromoarm	891	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16540350	16541285	AT3TE67050	.	+	ATREP4	Helitron	RC	935	short	832	high	2673229	chromoarm	708	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16541285	16541399	AT3TE67055	.	+	HELITRONY3	Helitron	RC	114	short	1399	high	2674164	chromoarm	594	no-CHH	no-CHH	.	.	.	.	.
Chr3	16549866	16549966	AT3TE67090	.	-	ATMUNX1	MuDR	DNA	101	short	155	medium	2682744	chromoarm	135	.	.	.	.	.	.	.
Chr3	16549967	16550605	AT3TE67095	.	+	ATREP10B	Helitron	RC	638	short	491	high	2682846	chromoarm	237	no-CHH	no-RdDM	.	.	.	.	.
Chr3	16550605	16550717	AT3TE67100	.	+	BRODYAGA2	MuDR	DNA	112	short	525	high	2683484	chromoarm	875	no-CHH	no-CHH	.	.	.	.	.
Chr3	16551157	16551324	AT3TE67105	.	-	RathE1_cons	.	RathE1_cons	167	short	213	high	2684036	chromoarm	1427	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16552592	16552748	AT3TE67110	.	-	ATHILA7	Gypsy	LTR	156	short	134	medium	2685471	chromoarm	2862	no-CHH	no-CHH	.	.	.	.	.
Chr3	16553000	16553081	AT3TE67115	.	+	ATREP3	Helitron	RC	81	tiny	1439	high	2685879	chromoarm	3270	no-CHH	no-CHH	.	.	.	.	.
Chr3	16553081	16554521	AT3TE67120	.	+	ATREP11	Helitron	RC	1440	short	841	high	2685960	chromoarm	2960	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16554521	16554758	AT3TE67125	.	+	ATREP3	Helitron	RC	237	short	1439	high	2687400	chromoarm	2723	no-CHH	no-CHH	.	.	.	.	.
Chr3	16556035	16556114	AT3TE67130	.	-	TNAT1A	.	DNA	80	tiny	162	medium	2688913	chromoarm	1367	.	.	.	.	.	.	.
Chr3	16556114	16556705	AT3TE67135	.	-	TNAT1A	.	DNA	591	short	162	medium	2688993	chromoarm	776	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16558136	16559470	AT3TE67140	.	+	ATREP10A	Helitron	RC	1334	short	279	high	2691015	chromoarm	208	no-CHH	no-CHH	.	.	.	.	.
Chr3	16559470	16559518	AT3TE67145	.	-	ATREP15	Helitron	RC	48	tiny	1003	high	2692349	chromoarm	1542	no-CHH	no-CHH	.	.	.	.	.
Chr3	16559518	16559556	AT3TE67150	.	+	ATREP15	Helitron	RC	38	tiny	1003	high	2692397	chromoarm	1590	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	16559782	16560363	AT3TE67155	.	-	ARNOLDY2	MuDR	DNA	581	short	288	high	2692661	chromoarm	1854	no-RdDM	no-CHH	.	.	.	.	.
Chr3	16560363	16563589	AT3TE67160	.	+	ATREP3	Helitron	RC	3226	medium	1439	high	2693242	chromoarm	1291	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16563589	16563734	AT3TE67165	.	+	ATREP3	Helitron	RC	145	short	1439	high	2696468	chromoarm	1146	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	16566965	16567029	AT3TE67175	.	-	ATCOPIA57	Copia	LTR	64	tiny	48	low	2699844	chromoarm	635	no-CHH	no-CHH	.	.	.	.	.
Chr3	16568176	16568744	AT3TE67180	.	-	ATHATN6	HAT	DNA	568	short	43	low	2701055	chromoarm	378	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	16569678	16570084	AT3TE67185	.	-	ATREP10D	Helitron	RC	406	short	1295	high	2702557	chromoarm	28	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	16573764	16574340	AT3TE67195	.	-	ATREP4	Helitron	RC	576	short	832	high	2706643	chromoarm	598	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	16574473	16574581	AT3TE67200	.	+	ATHATN1	HAT	DNA	108	short	69	medium	2707352	chromoarm	1241	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	16574581	16575656	AT3TE67205	.	+	ATREP15	Helitron	RC	1075	short	1003	high	2707460	chromoarm	166	no-CHH	no-CHH	.	.	.	.	.
Chr3	16575656	16575845	AT3TE67210	.	-	HELITRONY1B	Helitron	RC	189	short	414	high	2708535	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	16575845	16575887	AT3TE67215	.	-	BRODYAGA2	MuDR	DNA	42	tiny	525	high	2708724	chromoarm	0	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	16576535	16576872	AT3TE67220	.	+	ATLINE2	L1	LINE	337	short	138	medium	2709414	chromoarm	362	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	16577132	16578369	AT3TE67225	.	-	HELITRONY1E	Helitron	RC	1237	short	447	high	2710011	chromoarm	14	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	16578709	16579312	AT3TE67230	.	+	ATREP10D	Helitron	RC	603	short	1295	high	2711588	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	16579312	16579753	AT3TE67235	.	-	BRODYAGA1	MuDR	DNA	441	short	251	high	2712191	chromoarm	578	no-CHH	no-CHH	.	.	.	.	.
Chr3	16579753	16579814	AT3TE67240	.	+	ATREP11	Helitron	RC	61	tiny	841	high	2712632	chromoarm	1019	no-CHH	no-CHH	.	.	.	.	.
Chr3	16582278	16582784	AT3TE67250	.	-	HELITRONY1A	Helitron	RC	506	short	271	high	2715157	chromoarm	5	no-CHH	no-CHH	.	.	.	.	.
Chr3	16582784	16582860	AT3TE67255	.	-	ATHAT10	HAT	DNA	76	tiny	35	low	2715663	chromoarm	511	no-CHH	no-CHH	.	.	.	.	.
Chr3	16583722	16584148	AT3TE67260	.	+	Unassigned	.	Unassigned	426	short	.	low	2716601	chromoarm	1449	no-CHH	no-CHH	.	.	.	.	.
Chr3	16584877	16585241	AT3TE67265	.	-	ATREP3	Helitron	RC	364	short	1439	high	2717756	chromoarm	832	no-CHH	no-CHH	.	.	.	.	.
Chr3	16585241	16585281	AT3TE67270	.	-	HELITRONY2	Helitron	RC	40	tiny	198	medium	2718120	chromoarm	792	no-CHH	no-CHH	.	.	.	.	.
Chr3	16585281	16585321	AT3TE67275	.	-	BRODYAGA1	MuDR	DNA	40	tiny	251	high	2718160	chromoarm	752	no-CHH	no-CHH	.	.	.	.	.
Chr3	16585321	16586140	AT3TE67280	.	+	HELITRONY3	Helitron	RC	819	short	1399	high	2718200	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	16588531	16589179	AT3TE67290	.	+	HELITRONY1D	Helitron	RC	648	short	756	high	2721410	chromoarm	2167	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16589221	16593105	AT3TE67295	.	-	ATLINE1_1	L1	LINE	3884	medium	61	medium	2722100	chromoarm	2857	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	16593105	16593323	AT3TE67300	.	-	ATLINE1_1	L1	LINE	218	short	61	medium	2725984	chromoarm	3526	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	16593345	16594627	AT3TE67305	.	-	ATLINE1_2	L1	LINE	1282	short	41	low	2726224	chromoarm	2222	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	16595048	16596366	AT3TE67310	.	+	ATLINEIII	L1	LINE	1318	short	196	medium	2727927	chromoarm	483	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	16598727	16599064	AT3TE67320	.	-	HELITRONY1D	Helitron	RC	337	short	756	high	2731606	chromoarm	177	no-CHH	no-CHH	.	.	.	.	.
Chr3	16600732	16604312	AT3TE67325	.	-	ATHAT2	HAT	DNA	3580	medium	19	low	2733611	chromoarm	1581	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	16606252	16616043	AT3TE67330	.	-	ATREP3	Helitron	RC	9791	long	1439	high	2739131	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	16608444	16609339	AT3TE67335	.	-	ATREP15	Helitron	RC	895	short	1003	high	2741323	chromoarm	2105	no-CHH	no-CHH	.	.	.	.	.
Chr3	16609345	16609639	AT3TE67340	.	-	ATMUN1	MuDR	DNA	294	short	107	medium	2742224	chromoarm	1805	no-CHH	no-CHH	.	.	.	.	.
Chr3	16609639	16609811	AT3TE67345	.	+	ATREP19	.	DNA	172	short	189	medium	2742518	chromoarm	1633	no-CHH	no-CHH	.	.	.	.	.
Chr3	16613425	16613496	AT3TE67355	.	-	HELITRONY3	Helitron	RC	71	tiny	1399	high	2746304	chromoarm	121	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	16613496	16614563	AT3TE67360	.	-	HELITRONY1B	Helitron	RC	1067	short	414	high	2746375	chromoarm	2	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	16626875	16627159	AT3TE67410	.	-	ATHPOGON1	Pogo	DNA	284	short	174	medium	2759754	chromoarm	1544	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	16627160	16628036	AT3TE67415	.	-	META1	Copia	LTR	877	short	138	medium	2760038	chromoarm	667	.	.	.	.	.	.	.
Chr3	16635535	16635737	AT3TE67440	.	+	ATMUNX1	MuDR	DNA	202	short	155	medium	2768414	chromoarm	1047	no-CHH	no-CHH	.	.	.	.	.
Chr3	16635836	16647479	AT3TE67445	.	+	VANDAL7	MuDR	DNA	11643	long	36	low	2768715	chromoarm	441	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	16636032,16636032,16639233,16641335,16641703,16642740	16638960,16639006,16640670,16642176,16642209,16643771	+,+,+,+,+,+	transcript_id-"cda9c3c1-c74a-4167-8b27-a1a449295d8a|4",transcript_id-"9b2b3127-26e4-4852-8551-cf45b1f126e6|4",transcript_id-"0c49fb2b-0bbc-488e-8a96-ec30924da34a|11",transcript_id-"c255a0f5-81e0-4ab5-ab58-36f78a6d438c|881",transcript_id-"d62b8810-7e9b-4abb-9b2c-911d6fd20657|14",transcript_id-"efc841df-95af-412e-8884-323e3bd0c678|4"
Chr3	16669865	16672298	AT3TE67540	.	-	ATGP3	Gypsy	LTR	2433	medium	60	medium	2802744	chromoarm	569	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	16672299	16672845	AT3TE67545	.	-	BRODYAGA1A	MuDR	DNA	546	short	586	high	2805178	chromoarm	300	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	16672845	16672947	AT3TE67550	.	-	BRODYAGA1A	MuDR	DNA	102	short	586	high	2805724	chromoarm	198	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr3	16672947	16672979	AT3TE67555	.	-	BRODYAGA1	MuDR	DNA	32	tiny	251	high	2805826	chromoarm	166	no-CHH	no-RdDM	.	.	.	.	.
Chr3	16675719	16675881	AT3TE67565	.	+	HARBINGER	Harbinger	DNA	162	short	90	medium	2808598	chromoarm	839	no-CHH	no-CHH	ExpressedAndAnnotated	16675622	16676816	+	transcript_id-"c8e54647-4803-4900-a11f-a725786ee21d|4"
Chr3	16676040	16676080	AT3TE67570	.	+	TAG2	HAT	DNA	40	tiny	86	medium	2808919	chromoarm	1160	no-CHH	no-CHH	.	.	.	.	.
Chr3	16676960	16677399	AT3TE67575	.	-	HELITRONY3	Helitron	RC	439	short	1399	high	2809839	chromoarm	1280	no-CHH	no-CHH	.	.	.	.	.
Chr3	16677399	16678516	AT3TE67580	.	+	ATREP1	Helitron	RC	1117	short	498	high	2810278	chromoarm	163	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16678516	16678727	AT3TE67585	.	+	ATREP1	Helitron	RC	211	short	498	high	2811395	chromoarm	0	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	16685437	16686138	AT3TE67610	.	+	TAG3N1	HAT	DNA	701	short	97	medium	2818316	chromoarm	845	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	16686141	16686898	AT3TE67615	.	+	TAG3N1	HAT	DNA	757	short	97	medium	2819020	chromoarm	167	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	16691825	16691855	AT3TE67630	.	-	ATCOPIA32B	Copia	LTR	30	tiny	10	low	2824704	chromoarm	97	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	16691858	16697596	AT3TE67635	.	-	ATCOPIA32	Copia	LTR	5738	long	8	low	2824737	chromoarm	0	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	16697846	16698354	AT3TE67640	.	+	HELITRONY1D	Helitron	RC	508	short	756	high	2830725	chromoarm	18	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	16698361	16698469	AT3TE67645	.	-	ATSINE4	.	SINE	108	short	98	medium	2831240	chromoarm	533	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	16699075	16699153	AT3TE67650	.	-	VANDAL20	MuDR	DNA	78	tiny	51	medium	2831954	chromoarm	1247	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16699460	16699770	AT3TE67655	.	-	VANDAL20	MuDR	DNA	310	short	51	medium	2832339	chromoarm	1362	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16699919	16700160	AT3TE67660	.	+	VANDAL20	MuDR	DNA	241	short	51	medium	2832798	chromoarm	972	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16700464	16700538	AT3TE67665	.	-	VANDAL20	MuDR	DNA	74	tiny	51	medium	2833343	chromoarm	594	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	16704531	16704653	AT3TE67675	.	+	ATIS112A	Harbinger	DNA	122	short	173	medium	2837410	chromoarm	1196	no-CHH	no-CHH	.	.	.	.	.
Chr3	16706063	16706384	AT3TE67680	.	+	ATREP11	Helitron	RC	321	short	841	high	2838942	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	16708447	16708509	AT3TE67685	.	-	BRODYAGA1	MuDR	DNA	62	tiny	251	high	2841326	chromoarm	798	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16708509	16708835	AT3TE67690	.	+	BRODYAGA1A	MuDR	DNA	326	short	586	high	2841388	chromoarm	860	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16709826	16711805	AT3TE67695	.	-	TA11	L1	LINE	1979	short	157	medium	2842705	chromoarm	562	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	16711806	16711856	AT3TE67700	.	-	TA11	L1	LINE	51	tiny	157	medium	2844684	chromoarm	511	.	.	.	.	.	.	.
Chr3	16713072	16713094	AT3TE67705	.	-	ATREP15	Helitron	RC	22	tiny	1003	high	2845951	chromoarm	63	no-CHH	no-CHH	.	.	.	.	.
Chr3	16713094	16713206	AT3TE67710	.	-	HELITRONY3	Helitron	RC	112	short	1399	high	2845973	chromoarm	85	no-CHH	no-CHH	.	.	.	.	.
Chr3	16713206	16713256	AT3TE67715	.	-	ARNOLDY2	MuDR	DNA	50	tiny	288	high	2846085	chromoarm	197	no-CHH	no-CHH	.	.	.	.	.
Chr3	16713256	16714779	AT3TE67720	.	+	ARNOLDY1	MuDR	DNA	1523	short	237	high	2846135	chromoarm	247	no-CHH	no-CHH	.	.	.	.	.
Chr3	16714779	16714802	AT3TE67725	.	+	ARNOLDY2	MuDR	DNA	23	tiny	288	high	2847658	chromoarm	1770	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr3	16715092	16715166	AT3TE67730	.	-	ATLANTYS3	Gypsy	LTR	74	tiny	142	medium	2847971	chromoarm	2083	no-CHH	no-CHH	.	.	.	.	.
Chr3	16715166	16715440	AT3TE67735	.	-	ATLANTYS2	Gypsy	LTR	274	short	179	medium	2848045	chromoarm	2157	no-CHH	no-CHH	.	.	.	.	.
Chr3	16715850	16715891	AT3TE67740	.	-	ATLANTYS2	Gypsy	LTR	41	tiny	179	medium	2848729	chromoarm	2841	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	16715891	16716235	AT3TE67745	.	-	ATLANTYS2	Gypsy	LTR	344	short	179	medium	2848770	chromoarm	2882	no-CHH	no-CHH	.	.	.	.	.
Chr3	16717119	16717166	AT3TE67750	.	-	ATLANTYS3	Gypsy	LTR	47	tiny	142	medium	2849998	chromoarm	2463	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	16717166	16717701	AT3TE67755	.	+	VANDAL6	MuDR	DNA	535	short	89	medium	2850045	chromoarm	1928	no-CHH	no-CHH	.	.	.	.	.
Chr3	16719334	16719404	AT3TE67760	.	-	ATLANTYS3	Gypsy	LTR	70	tiny	142	medium	2852213	chromoarm	225	no-CHH	no-CHH	.	.	.	.	.
Chr3	16719404	16719660	AT3TE67765	.	-	ATLANTYS2	Gypsy	LTR	256	short	179	medium	2852283	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	16719660	16720098	AT3TE67770	.	-	ATLANTYS2	Gypsy	LTR	438	short	179	medium	2852539	chromoarm	0	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	16723024	16723678	AT3TE67780	.	-	ATREP2	Helitron	RC	654	short	164	medium	2855903	chromoarm	350	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16726312	16726472	AT3TE67790	.	+	ARNOLDY1	MuDR	DNA	160	short	237	high	2859191	chromoarm	196	no-CHH	no-CHH	.	.	.	.	.
Chr3	16726472	16728618	AT3TE67795	.	+	HELITRONY3	Helitron	RC	2146	medium	1399	high	2859351	chromoarm	291	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	16728618	16728695	AT3TE67800	.	+	HELITRONY1E	Helitron	RC	77	tiny	447	high	2861497	chromoarm	214	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	16728696	16728852	AT3TE67805	.	-	ATREP4	Helitron	RC	156	short	832	high	2861575	chromoarm	57	no-CHH	no-CHH	.	.	.	.	.
Chr3	16732164	16732301	AT3TE67815	.	-	ATDNA2T9C	MuDR	DNA	137	short	242	high	2865043	chromoarm	653	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	16737502	16737595	AT3TE67830	.	+	BRODYAGA2	MuDR	DNA	93	tiny	525	high	2870381	chromoarm	1648	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16737595	16738663	AT3TE67835	.	-	BRODYAGA2	MuDR	DNA	1068	short	525	high	2870474	chromoarm	866	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16744109	16744800	AT3TE67850	.	+	VANDAL8	MuDR	DNA	691	short	123	medium	2876988	chromoarm	1117	no-CHH	no-CHH	.	.	.	.	.
Chr3	16744800	16745158	AT3TE67855	.	-	ATREP19	.	DNA	358	short	189	medium	2877679	chromoarm	759	no-CHH	no-CHH	.	.	.	.	.
Chr3	16764603	16764776	AT3TE67930	.	-	ATCOPIA13	Copia	LTR	173	short	35	low	2897482	chromoarm	362	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr3	16767417	16767954	AT3TE67940	.	-	ATREP10B	Helitron	RC	537	short	491	high	2900296	chromoarm	120	no-CHH	no-CHH	.	.	.	.	.
Chr3	16770364	16770569	AT3TE67950	.	+	RathE1_cons	.	RathE1_cons	205	short	213	high	2903243	chromoarm	425	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16773119	16773413	AT3TE67960	.	+	ATTIRX1B	.	DNA	294	short	44	low	2905998	chromoarm	211	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	16775014	16775987	AT3TE67965	.	+	ATREP10D	Helitron	RC	973	short	1295	high	2907893	chromoarm	280	no-CHH	no-CHH	.	.	.	.	.
Chr3	16781289	16781799	AT3TE67980	.	-	TNAT1A	.	DNA	510	short	162	medium	2914168	chromoarm	221	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16787586	16787744	AT3TE68000	.	-	TAG2	HAT	DNA	158	short	86	medium	2920465	chromoarm	641	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	16787850	16788010	AT3TE68005	.	-	TAG2	HAT	DNA	160	short	86	medium	2920729	chromoarm	905	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	16799072	16799798	AT3TE68050	.	+	TA11	L1	LINE	726	short	157	medium	2931951	chromoarm	1692	no-CHH	no-CHH	.	.	.	.	.
Chr3	16809184	16814151	AT3TE68090	.	-	ATCOPIA81	Copia	LTR	4967	medium	6	low	2942063	chromoarm	1410	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	16812311	16812179	-	transcript_id-"f256a1f9-3b8a-4e32-a64a-131209951829|3"
Chr3	16814155	16814256	AT3TE68095	.	-	RathE3_cons	.	RathE3_cons	101	short	104	medium	2947034	chromoarm	4300	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	16817887	16817997	AT3TE68105	.	-	RathE2_cons	.	RathE2_cons	110	short	74	medium	2950766	chromoarm	559	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16819258	16819712	AT3TE68110	.	-	ATREP11	Helitron	RC	454	short	841	high	2952137	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	16819712	16819752	AT3TE68115	.	-	ATHPOGON1	Pogo	DNA	40	tiny	174	medium	2952591	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	16826299	16826342	AT3TE68140	.	-	ATREP10D	Helitron	RC	43	tiny	1295	high	2959178	chromoarm	77	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	16826342	16828630	AT3TE68145	.	+	ATREP10D	Helitron	RC	2288	medium	1295	high	2959221	chromoarm	120	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	16832022	16832108	AT3TE68155	.	-	ATREP10D	Helitron	RC	86	tiny	1295	high	2964901	chromoarm	0	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	16832108	16832281	AT3TE68160	.	+	ATREP15	Helitron	RC	173	short	1003	high	2964987	chromoarm	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	16832281	16832857	AT3TE68165	.	-	HELITRONY3	Helitron	RC	576	short	1399	high	2965160	chromoarm	25	no-CHH	no-CHH	.	.	.	.	.
Chr3	16832857	16832909	AT3TE68170	.	-	ATTIR16T3A	.	DNA	52	tiny	106	medium	2965736	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	16838711	16838968	AT3TE68190	.	-	ATRE1	Copia	LTR	257	short	22	low	2971590	chromoarm	1061	no-CHH	no-CHH	.	.	.	.	.
Chr3	16845486	16845678	AT3TE68220	.	-	ARNOLDY2	MuDR	DNA	192	short	288	high	2978365	chromoarm	313	no-CHH	no-CHH	.	.	.	.	.
Chr3	16845678	16846949	AT3TE68225	.	+	ATREP11	Helitron	RC	1271	short	841	high	2978557	chromoarm	505	no-CHH	no-CHH	.	.	.	.	.
Chr3	16846949	16846988	AT3TE68230	.	-	ATREP10D	Helitron	RC	39	tiny	1295	high	2979828	chromoarm	941	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16846988	16847034	AT3TE68235	.	-	VANDAL14	MuDR	DNA	46	tiny	25	low	2979867	chromoarm	895	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	16847769	16847893	AT3TE68240	.	-	ATN9_1	MuDR	DNA	124	short	65	medium	2980648	chromoarm	36	PolIV-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	16851386	16851435	AT3TE68250	.	-	ATREP3	Helitron	RC	50	tiny	1439	high	2984264	chromoarm	1498	.	.	.	.	.	.	.
Chr3	16851435	16854288	AT3TE68255	.	-	ATREP4	Helitron	RC	2853	medium	832	high	2984314	chromoarm	1525	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16854288	16854540	AT3TE68260	.	+	HELITRONY2	Helitron	RC	252	short	198	medium	2987167	chromoarm	1273	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	16854540	16854576	AT3TE68265	.	+	ATREP10D	Helitron	RC	36	tiny	1295	high	2987419	chromoarm	1237	no-CHH	no-RdDM	.	.	.	.	.
Chr3	16854826	16855534	AT3TE68270	.	-	ATHPOGON2	Pogo	DNA	708	short	27	low	2987705	chromoarm	279	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16877663	16877703	AT3TE68360	.	-	ATREP8	Helitron	RC	40	tiny	75	medium	3010542	chromoarm	588	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16877703	16877737	AT3TE68365	.	-	ATREP6	Helitron	RC	34	tiny	181	medium	3010582	chromoarm	628	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	16877737	16878508	AT3TE68370	.	-	ATREP6	Helitron	RC	771	short	181	medium	3010616	chromoarm	662	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16878508	16878704	AT3TE68375	.	-	ATREP6	Helitron	RC	196	short	181	medium	3011387	chromoarm	1433	no-CHH	no-CHH	.	.	.	.	.
Chr3	16878704	16878815	AT3TE68380	.	+	HELITRONY1D	Helitron	RC	111	short	756	high	3011583	chromoarm	1629	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	16879337	16880668	AT3TE68385	.	+	ATREP3	Helitron	RC	1331	short	1439	high	3012216	chromoarm	1513	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16880668	16880758	AT3TE68390	.	-	HELITRONY3	Helitron	RC	90	tiny	1399	high	3013547	chromoarm	1423	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16880759	16880805	AT3TE68395	.	+	ATREP11	Helitron	RC	47	tiny	841	high	3013637	chromoarm	1376	.	.	.	.	.	.	.
Chr3	16880889	16881526	AT3TE68400	.	-	ATHATN7	HAT	DNA	637	short	71	medium	3013768	chromoarm	655	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16881526	16881888	AT3TE68405	.	-	ATREP15	Helitron	RC	362	short	1003	high	3014405	chromoarm	293	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16885297	16885391	AT3TE68415	.	-	VANDAL3	MuDR	DNA	94	tiny	177	medium	3018176	chromoarm	834	no-CHH	no-CHH	.	.	.	.	.
Chr3	16890705	16891199	AT3TE68430	.	+	ATLINEIII	L1	LINE	494	short	196	medium	3023584	chromoarm	87	no-CHH	no-CHH	.	.	.	.	.
Chr3	16901158	16901757	AT3TE68470	.	+	ATREP10A	Helitron	RC	599	short	279	high	3034037	chromoarm	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	16901757	16902333	AT3TE68475	.	+	HELITRONY3	Helitron	RC	576	short	1399	high	3034636	chromoarm	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	16902333	16902366	AT3TE68480	.	+	ATREP1	Helitron	RC	33	tiny	498	high	3035212	chromoarm	0	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	16902366	16903891	AT3TE68485	.	+	ATREP1	Helitron	RC	1525	short	498	high	3035245	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16903891	16904042	AT3TE68490	.	-	HELITRONY3	Helitron	RC	151	short	1399	high	3036770	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	16904042	16904131	AT3TE68495	.	+	ATREP10A	Helitron	RC	89	tiny	279	high	3036921	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	16904522	16904619	AT3TE68500	.	-	ATREP10D	Helitron	RC	97	tiny	1295	high	3037401	chromoarm	386	no-CHH	no-CHH	.	.	.	.	.
Chr3	16904619	16905739	AT3TE68505	.	-	ATREP11	Helitron	RC	1120	short	841	high	3037498	chromoarm	483	no-CHH	no-CHH	.	.	.	.	.
Chr3	16905739	16905944	AT3TE68510	.	-	ATREP15	Helitron	RC	205	short	1003	high	3038618	chromoarm	1603	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	16905944	16905977	AT3TE68515	.	-	HELITRONY1A	Helitron	RC	33	tiny	271	high	3038823	chromoarm	1765	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16910866	16911444	AT3TE68530	.	-	HELITRONY3	Helitron	RC	579	short	1399	high	3043744	chromoarm	187	.	.	.	.	.	.	.
Chr3	16911444	16911607	AT3TE68535	.	+	HELITRONY1B	Helitron	RC	163	short	414	high	3044323	chromoarm	766	no-CHH	no-CHH	.	.	.	.	.
Chr3	16933789	16933909	AT3TE68620	.	-	HELITRONY3	Helitron	RC	120	short	1399	high	3066668	chromoarm	201	no-CHH	no-CHH	.	.	.	.	.
Chr3	16933909	16934152	AT3TE68625	.	+	BRODYAGA1A	MuDR	DNA	243	short	586	high	3066788	chromoarm	321	no-CHH	no-CHH	.	.	.	.	.
Chr3	16934152	16934417	AT3TE68630	.	+	DT1	Mariner	DNA	265	short	123	medium	3067031	chromoarm	564	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	16934417	16934455	AT3TE68635	.	-	ATREP1	Helitron	RC	38	tiny	498	high	3067296	chromoarm	829	no-CHH	no-CHH	.	.	.	.	.
Chr3	16937018	16937059	AT3TE68645	.	+	HELITRONY1A	Helitron	RC	41	tiny	271	high	3069897	chromoarm	0	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	16937059	16937093	AT3TE68650	.	+	ATREP3	Helitron	RC	34	tiny	1439	high	3069938	chromoarm	0	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	16937093	16937264	AT3TE68655	.	-	HELITRONY1B	Helitron	RC	171	short	414	high	3069972	chromoarm	0	no-RdDM	no-CHH	.	.	.	.	.
Chr3	16937264	16938903	AT3TE68660	.	-	ATREP3	Helitron	RC	1639	short	1439	high	3070143	chromoarm	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	16938903	16939286	AT3TE68665	.	+	ATREP5	Helitron	RC	383	short	624	high	3071782	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	16947271	16947701	AT3TE68690	.	-	BRODYAGA2	MuDR	DNA	430	short	525	high	3080150	chromoarm	388	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	16957464	16962731	AT3TE68730	.	-	ATCOPIA79	Copia	LTR	5267	long	7	low	3090343	chromoarm	664	no-RdDM	no-RdDM	ExpressedAndAnnotated	16957901	16962883	+	transcript_id-"4d09a8a0-8013-4952-96b4-f8b9e5020038|3"
Chr3	16968981	16969118	AT3TE68760	.	+	ATHILA7	Gypsy	LTR	137	short	134	medium	3101860	chromoarm	164	no-CHH	no-CHH	.	.	.	.	.
Chr3	16973860	16974228	AT3TE68780	.	+	ATMUNX1	MuDR	DNA	368	short	155	medium	3106739	chromoarm	417	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16975459	16975559	AT3TE68785	.	+	ATHAT1	HAT	DNA	100	short	105	medium	3108338	chromoarm	694	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	16975974	16976198	AT3TE68790	.	-	ATCOPIA28	Copia	LTR	224	short	81	medium	3108853	chromoarm	761	no-CHH	no-CHH	.	.	.	.	.
Chr3	16976198	16976351	AT3TE68795	.	+	SIMPLEHAT1	HAT	DNA	153	short	56	medium	3109077	chromoarm	608	no-CHH	no-CHH	.	.	.	.	.
Chr3	16976371	16976460	AT3TE68800	.	-	ATHATN1	HAT	DNA	89	tiny	69	medium	3109250	chromoarm	499	no-CHH	no-CHH	.	.	.	.	.
Chr3	16988913	16989594	AT3TE68850	.	+	TNAT1A	.	DNA	681	short	162	medium	3121792	chromoarm	849	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16989594	16989641	AT3TE68855	.	+	TNAT1A	.	DNA	47	tiny	162	medium	3122473	chromoarm	1530	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	16992429	16992530	AT3TE68865	.	-	HELITRONY3	Helitron	RC	101	short	1399	high	3125308	chromoarm	4365	no-CHH	no-CHH	.	.	.	.	.
Chr3	16992530	16992612	AT3TE68870	.	-	HELITRONY3	Helitron	RC	82	tiny	1399	high	3125409	chromoarm	4466	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	16992612	16995775	AT3TE68875	.	-	HELITRONY3	Helitron	RC	3163	medium	1399	high	3125491	chromoarm	2387	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	16995775	16995962	AT3TE68880	.	-	HELITRONY3	Helitron	RC	187	short	1399	high	3128654	chromoarm	2200	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	16995962	16995983	AT3TE68885	.	+	HELITRONY3	Helitron	RC	21	tiny	1399	high	3128841	chromoarm	2179	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	16995983	16996299	AT3TE68890	.	+	HELITRONY1D	Helitron	RC	316	short	756	high	3128862	chromoarm	1863	no-CHH	no-CHH	.	.	.	.	.
Chr3	16996299	16996449	AT3TE68895	.	+	ATREP10D	Helitron	RC	150	short	1295	high	3129178	chromoarm	1713	no-CHH	no-CHH	.	.	.	.	.
Chr3	17000344	17000635	AT3TE68905	.	-	ATCOPIA66	Copia	LTR	291	short	20	low	3133223	chromoarm	251	no-CHH	no-CHH	.	.	.	.	.
Chr3	17000726	17000890	AT3TE68910	.	-	ATCOPIA35	Copia	LTR	164	short	22	low	3133605	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	17006061	17006851	AT3TE68930	.	+	ATREP3	Helitron	RC	790	short	1439	high	3138940	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	17018719	17018928	AT3TE68980	.	+	ATMU1	MuDR	DNA	209	short	59	medium	3151598	chromoarm	894	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	17019568	17019782	AT3TE68985	.	-	ATMU2	MuDR	DNA	214	short	64	medium	3152447	chromoarm	260	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	17027076	17027279	AT3TE69010	.	-	ATMUNX1	MuDR	DNA	203	short	155	medium	3159955	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	17027444	17027828	AT3TE69015	.	-	BRODYAGA1A	MuDR	DNA	384	short	586	high	3160323	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	17032567	17032898	AT3TE69030	.	+	ATLINEIII	L1	LINE	331	short	196	medium	3165446	chromoarm	725	no-CHH	no-CHH	.	.	.	.	.
Chr3	17033254	17034688	AT3TE69035	.	+	ATREP10A	Helitron	RC	1434	short	279	high	3166133	chromoarm	1412	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	17034688	17034717	AT3TE69040	.	+	ATREP10B	Helitron	RC	29	tiny	491	high	3167567	chromoarm	1709	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	17034952	17035028	AT3TE69045	.	-	ATSINE4	.	SINE	76	tiny	98	medium	3167831	chromoarm	1398	no-CHH	no-RdDM	.	.	.	.	.
Chr3	17036977	17037299	AT3TE69050	.	-	ATREP11	Helitron	RC	322	short	841	high	3169856	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	17042052	17043012	AT3TE69070	.	-	TSCL	.	LINE?	960	short	81	medium	3174931	chromoarm	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	17044036	17044244	AT3TE69075	.	-	HELITRONY1E	Helitron	RC	208	short	447	high	3176915	chromoarm	536	no-CHH	no-CHH	.	.	.	.	.
Chr3	17044244	17044446	AT3TE69080	.	-	ARNOLDY1	MuDR	DNA	202	short	237	high	3177123	chromoarm	744	no-CHH	no-CHH	.	.	.	.	.
Chr3	17044446	17045997	AT3TE69085	.	-	ARNOLDY1	MuDR	DNA	1551	short	237	high	3177325	chromoarm	946	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	17046124	17046403	AT3TE69090	.	-	VANDAL9	MuDR	DNA	279	short	43	low	3179003	chromoarm	2624	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	17047215	17047390	AT3TE69095	.	-	VANDAL9	MuDR	DNA	175	short	43	low	3180094	chromoarm	3715	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	17047902	17047950	AT3TE69100	.	+	ATN9_1	MuDR	DNA	49	tiny	65	medium	3180780	chromoarm	4004	.	.	.	.	.	.	.
Chr3	17047950	17048625	AT3TE69105	.	+	ATN9_1	MuDR	DNA	675	short	65	medium	3180829	chromoarm	3329	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	17050025	17050191	AT3TE69110	.	+	TAG3N1	HAT	DNA	166	short	97	medium	3182904	chromoarm	1763	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	17050191	17051429	AT3TE69115	.	+	ATDNA2T9A	MuDR	DNA	1238	short	48	low	3183070	chromoarm	525	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	17051429	17051553	AT3TE69120	.	+	ATDNA2T9C	MuDR	DNA	124	short	242	high	3184308	chromoarm	401	no-CHH	no-CHH	.	.	.	.	.
Chr3	17055552	17057941	AT3TE69130	.	+	ATCOPIA63	Copia	LTR	2389	medium	11	low	3188431	chromoarm	38	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	17058583	17058718	AT3TE69135	.	-	ATCOPIA57	Copia	LTR	135	short	48	low	3191462	chromoarm	499	no-CHH	no-CHH	.	.	.	.	.
Chr3	17059229	17059422	AT3TE69140	.	+	VANDAL1	MuDR	DNA	193	short	80	medium	3192108	chromoarm	0	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	17059523	17059627	AT3TE69145	.	-	VANDAL14	MuDR	DNA	104	short	25	low	3192402	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	17059987	17060380	AT3TE69150	.	-	ATN9_1	MuDR	DNA	393	short	65	medium	3192866	chromoarm	91	no-RdDM	no-CHH	.	.	.	.	.
Chr3	17060732	17063206	AT3TE69155	.	-	ATREP3	Helitron	RC	2474	medium	1439	high	3193611	chromoarm	836	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	17063206	17063228	AT3TE69160	.	-	ATREP3	Helitron	RC	22	tiny	1439	high	3196085	chromoarm	3310	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	17063228	17063249	AT3TE69165	.	-	ATREP3	Helitron	RC	21	tiny	1439	high	3196107	chromoarm	3332	no-RdDM	no-CHH	.	.	.	.	.
Chr3	17063256	17063391	AT3TE69170	.	+	ATREP10B	Helitron	RC	135	short	491	high	3196135	chromoarm	3360	no-CHH	no-CHH	.	.	.	.	.
Chr3	17063427	17064224	AT3TE69175	.	+	ATLINE1_1	L1	LINE	797	short	61	medium	3196306	chromoarm	3531	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	17067426	17067664	AT3TE69185	.	-	ATHILA5	Gypsy	LTR	238	short	131	medium	3200305	chromoarm	3590	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	17067681	17068707	AT3TE69190	.	+	ATCOPIA28	Copia	LTR	1026	short	81	medium	3200560	chromoarm	2547	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	17068726	17070823	AT3TE69195	.	-	ATREP5	Helitron	RC	2097	medium	624	high	3201605	chromoarm	431	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	17070233	17070009	-	transcript_id-"24532e4e-cac9-41f6-a854-e78ea4113c03|3"
Chr3	17072091	17072250	AT3TE69200	.	+	ATCOPIA28	Copia	LTR	160	short	81	medium	3204969	chromoarm	407	.	.	.	.	.	.	.
Chr3	17072554	17072658	AT3TE69205	.	-	RathE3_cons	.	RathE3_cons	104	short	104	medium	3205433	chromoarm	537	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	17081171	17081475	AT3TE69240	.	-	ATHILA5	Gypsy	LTR	304	short	131	medium	3214050	chromoarm	487	no-CHH	no-CHH	.	.	.	.	.
Chr3	17097765	17097975	AT3TE69310	.	-	ATREP16	MuDR	DNA	210	short	47	low	3230644	chromoarm	450	no-CHH	no-CHH	.	.	.	.	.
Chr3	17097975	17098119	AT3TE69315	.	+	ATREP19	.	DNA	144	short	189	medium	3230854	chromoarm	660	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	17098119	17098409	AT3TE69320	.	+	ATREP5	Helitron	RC	290	short	624	high	3230998	chromoarm	804	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	17098755	17099730	AT3TE69325	.	+	ATREP10C	Helitron	RC	975	short	123	medium	3231634	chromoarm	185	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	17099730	17099801	AT3TE69330	.	+	ATREP1	Helitron	RC	71	tiny	498	high	3232609	chromoarm	114	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	17101083	17101795	AT3TE69335	.	-	ATREP13	Helitron	RC	712	short	106	medium	3233962	chromoarm	110	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	17101795	17102294	AT3TE69340	.	+	HELITRONY1B	Helitron	RC	499	short	414	high	3234674	chromoarm	822	no-CHH	no-CHH	.	.	.	.	.
Chr3	17106150	17115098	AT3TE69350	.	+	ATENSPM9	En-Spm	DNA	8948	long	97	medium	3239029	chromoarm	530	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	17106686,17106686,17106686,17110490,17111168,17111168,17111192	17109286,17110361,17110377,17110800,17114488,17114490,17114491	+,+,+,+,+,+,+	transcript_id-"8759c5e9-4da6-41b1-a199-b93063decff7|3",transcript_id-"e82d3621-ab1c-418e-967c-2375cf6d2b81|11",transcript_id-"7ec4a224-4f91-47de-be62-fa357ffbc776|3",transcript_id-"5c3a9588-eef2-4dc1-85d3-da06e6f4448a|4",transcript_id-"fa0e8702-77d2-43bf-87dc-cdea090c2400|6",transcript_id-"e4a0b82c-444b-4e2b-b641-309f50259eac|8",transcript_id-"8966a0f1-5210-43f5-8551-02ebb3c9dc49|11"
Chr3	17116581	17116870	AT3TE69355	.	-	ATREP9	Helitron	RC	289	short	201	high	3249460	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	17116870	17116943	AT3TE69360	.	-	ATREP9	Helitron	RC	73	tiny	201	high	3249749	chromoarm	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	17116943	17117076	AT3TE69365	.	-	ATREP6	Helitron	RC	133	short	181	medium	3249822	chromoarm	0	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	17141137	17141771	AT3TE69460	.	+	ATN9_1	MuDR	DNA	634	short	65	medium	3274016	chromoarm	1836	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	17141771	17141845	AT3TE69465	.	-	ATREP3	Helitron	RC	74	tiny	1439	high	3274650	chromoarm	2470	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	17141845	17143390	AT3TE69470	.	-	ATREP3	Helitron	RC	1545	short	1439	high	3274724	chromoarm	2406	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	17143390	17157692	AT3TE69475	.	+	ATREP3	Helitron	RC	14302	long	1439	high	3276269	chromoarm	0	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	17147464	17147495	AT3TE69480	.	-	ARNOLDY1	MuDR	DNA	31	tiny	237	high	3280343	chromoarm	597	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	17147496	17147537	AT3TE69485	.	-	ATREP15	Helitron	RC	42	tiny	1003	high	3280374	chromoarm	628	.	.	.	.	.	.	.
Chr3	17147537	17148178	AT3TE69490	.	-	ATREP11	Helitron	RC	641	short	841	high	3280416	chromoarm	218	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	17150117	17150795	AT3TE69495	.	-	ATREP13	Helitron	RC	678	short	106	medium	3282996	chromoarm	789	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	17150795	17150838	AT3TE69500	.	-	ATHILA4A	Gypsy	LTR	43	tiny	310	high	3283674	chromoarm	1467	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	17156581	17156606	AT3TE69520	.	+	ATREP11	Helitron	RC	25	tiny	841	high	3289460	chromoarm	635	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	17157692	17157905	AT3TE69525	.	+	ATREP15	Helitron	RC	213	short	1003	high	3290571	chromoarm	142	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	17162597	17162857	AT3TE69535	.	+	ATMU7	MuDR	DNA	261	short	32	low	3295475	chromoarm	375	.	.	.	.	.	.	.
Chr3	17163597	17163988	AT3TE69540	.	-	HELITRONY1D	Helitron	RC	391	short	756	high	3296476	chromoarm	1376	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	17163988	17164040	AT3TE69545	.	+	ATREP11	Helitron	RC	52	tiny	841	high	3296867	chromoarm	1750	no-CHH	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	17164040	17164259	AT3TE69550	.	+	ATLINE1_3A	L1	LINE	219	short	160	medium	3296919	chromoarm	1531	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	17164802	17165001	AT3TE69555	.	-	BRODYAGA2	MuDR	DNA	199	short	525	high	3297681	chromoarm	789	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	17166392	17166495	AT3TE69560	.	+	ATMUNX1	MuDR	DNA	103	short	155	medium	3299271	chromoarm	167	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	17197278	17197482	AT3TE69690	.	-	ATTIRTA1	Tc1	DNA	204	short	95	medium	3330157	chromoarm	277	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	17202777	17203930	AT3TE69710	.	+	HELITRONY3	Helitron	RC	1153	short	1399	high	3335656	chromoarm	929	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	17203930	17203971	AT3TE69715	.	-	HELITRONY3	Helitron	RC	41	tiny	1399	high	3336809	chromoarm	2082	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr3	17205321	17205492	AT3TE69720	.	-	ATHILA7	Gypsy	LTR	171	short	134	medium	3338200	chromoarm	996	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr3	17205703	17205980	AT3TE69725	.	+	ATHILA7	Gypsy	LTR	277	short	134	medium	3338582	chromoarm	508	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr3	17209054	17209294	AT3TE69735	.	-	HELITRONY1B	Helitron	RC	240	short	414	high	3341933	chromoarm	22	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	17209294	17210378	AT3TE69740	.	-	ATREP1	Helitron	RC	1084	short	498	high	3342173	chromoarm	262	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	17210379	17210550	AT3TE69745	.	-	ATREP1	Helitron	RC	172	short	498	high	3343257	chromoarm	379	.	.	.	.	.	.	.
Chr3	17210550	17210901	AT3TE69750	.	-	ATREP3	Helitron	RC	351	short	1439	high	3343429	chromoarm	28	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	17225866	17226019	AT3TE69810	.	-	ATHILA4	Gypsy	LTR	153	short	250	high	3358745	chromoarm	550	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	17226019	17227205	AT3TE69815	.	-	ATHILA4D_LTR	Gypsy	LTR	1186	short	106	medium	3358898	chromoarm	703	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	17227205	17227959	AT3TE69820	.	+	HELITRONY1B	Helitron	RC	754	short	414	high	3360084	chromoarm	806	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr3	17244270	17244379	AT3TE69890	.	-	HELITRONY1B	Helitron	RC	109	short	414	high	3377149	chromoarm	278	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	17244379	17245231	AT3TE69895	.	+	HELITRONY1B	Helitron	RC	852	short	414	high	3377258	chromoarm	387	no-CHH	no-CHH	.	.	.	.	.
Chr3	17245231	17245705	AT3TE69900	.	-	ATREP11	Helitron	RC	474	short	841	high	3378110	chromoarm	993	no-CHH	no-CHH	.	.	.	.	.
Chr3	17267328	17267359	AT3TE69990	.	-	ATTIR16T3A	.	DNA	31	tiny	106	medium	3400207	chromoarm	298	no-CHH	no-CHH	.	.	.	.	.
Chr3	17267359	17268106	AT3TE69995	.	-	ARNOLDY1	MuDR	DNA	747	short	237	high	3400238	chromoarm	329	no-CHH	no-CHH	.	.	.	.	.
Chr3	17268106	17268454	AT3TE70000	.	-	ATTIR16T3A	.	DNA	348	short	106	medium	3400985	chromoarm	432	no-CHH	no-CHH	.	.	.	.	.
Chr3	17268454	17268544	AT3TE70005	.	-	ATTIR16T3A	.	DNA	90	tiny	106	medium	3401333	chromoarm	342	no-CHH	no-CHH	.	.	.	.	.
Chr3	17268544	17268855	AT3TE70010	.	+	HELITRONY2	Helitron	RC	311	short	198	medium	3401423	chromoarm	31	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	17272276	17272626	AT3TE70020	.	+	VANDALNX2	MuDR	DNA	350	short	37	low	3405155	chromoarm	855	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	17273269	17273647	AT3TE70025	.	+	ATREP1	Helitron	RC	378	short	498	high	3406148	chromoarm	48	no-CHH	no-RdDM	.	.	.	.	.
Chr3	17275277	17275310	AT3TE70030	.	-	ATREP5	Helitron	RC	33	tiny	624	high	3408156	chromoarm	1471	no-CHH	no-CHH	.	.	.	.	.
Chr3	17275311	17277819	AT3TE70035	.	-	ATREP3	Helitron	RC	2509	medium	1439	high	3408189	chromoarm	816	.	.	.	.	.	.	.
Chr3	17277849	17278356	AT3TE70040	.	+	ATREP4	Helitron	RC	507	short	832	high	3410728	chromoarm	279	no-CHH	no-CHH	.	.	.	.	.
Chr3	17278356	17278430	AT3TE70045	.	-	ATREP9	Helitron	RC	74	tiny	201	high	3411235	chromoarm	205	no-CHH	no-CHH	.	.	.	.	.
Chr3	17298222	17298304	AT3TE70120	.	+	ATREP19	.	DNA	82	tiny	189	medium	3431101	chromoarm	155	no-CHH	no-CHH	.	.	.	.	.
Chr3	17298304	17298839	AT3TE70125	.	+	ATREP10B	Helitron	RC	535	short	491	high	3431183	chromoarm	237	no-RdDM	no-CHH	.	.	.	.	.
Chr3	17298839	17301277	AT3TE70130	.	-	ATREP3	Helitron	RC	2438	medium	1439	high	3431718	chromoarm	347	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	17301277	17301516	AT3TE70135	.	+	ATREP3	Helitron	RC	239	short	1439	high	3434156	chromoarm	108	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	17310912	17311829	AT3TE70170	.	+	ATREP10D	Helitron	RC	917	short	1295	high	3443791	chromoarm	71	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	17332267	17332637	AT3TE70260	.	+	ATLINE2	L1	LINE	370	short	138	medium	3465146	chromoarm	361	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	17352919	17352956	AT3TE70350	.	-	ATHATN2	HAT	DNA	37	tiny	46	low	3485798	chromoarm	150	no-CHH	RDR6-RdDM	.	.	.	.	.
Chr3	17352956	17353611	AT3TE70355	.	-	ATHATN2	HAT	DNA	655	short	46	low	3485835	chromoarm	102	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	17353612	17353678	AT3TE70360	.	+	ATREP10B	Helitron	RC	67	tiny	491	high	3486490	chromoarm	35	.	.	.	.	.	.	.
Chr3	17355236	17355318	AT3TE70365	.	-	ATLINE1_3A	L1	LINE	82	tiny	160	medium	3488115	chromoarm	385	no-CHH	no-CHH	.	.	.	.	.
Chr3	17355399	17355556	AT3TE70370	.	-	ATREP6	Helitron	RC	157	short	181	medium	3488278	chromoarm	548	no-CHH	no-CHH	.	.	.	.	.
Chr3	17355556	17356679	AT3TE70375	.	-	ATREP10D	Helitron	RC	1123	short	1295	high	3488435	chromoarm	346	no-CHH	no-CHH	.	.	.	.	.
Chr3	17356679	17356712	AT3TE70380	.	+	ARNOLDY2	MuDR	DNA	33	tiny	288	high	3489558	chromoarm	313	no-RdDM	no-CHH	.	.	.	.	.
Chr3	17356712	17356799	AT3TE70385	.	+	HELITRON2	Helitron	RC	87	tiny	194	medium	3489591	chromoarm	226	no-RdDM	no-CHH	.	.	.	.	.
Chr3	17362347	17362406	AT3TE70400	.	+	ATREP4	Helitron	RC	59	tiny	832	high	3495226	chromoarm	468	no-CHH	no-CHH	.	.	.	.	.
Chr3	17362406	17363069	AT3TE70405	.	-	META1	Copia	LTR	663	short	138	medium	3495285	chromoarm	527	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	17363069	17368157	AT3TE70410	.	-	META1	Copia	LTR	5088	long	138	medium	3495948	chromoarm	514	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	17372312	17372702	AT3TE70420	.	-	HELITRONY1C	Helitron	RC	390	short	120	medium	3505191	chromoarm	118	no-CHH	no-CHH	.	.	.	.	.
Chr3	17372702	17372758	AT3TE70425	.	+	RathE1_cons	.	RathE1_cons	56	tiny	213	high	3505581	chromoarm	62	no-CHH	no-CHH	.	.	.	.	.
Chr3	17380212	17380249	AT3TE70450	.	+	ATREP11	Helitron	RC	37	tiny	841	high	3513091	chromoarm	1124	no-CHH	no-CHH	.	.	.	.	.
Chr3	17380249	17380905	AT3TE70455	.	+	ATREP9	Helitron	RC	656	short	201	high	3513128	chromoarm	1161	no-CHH	no-CHH	.	.	.	.	.
Chr3	17380905	17380968	AT3TE70460	.	-	ATDNA2T9C	MuDR	DNA	63	tiny	242	high	3513784	chromoarm	1817	no-RdDM	no-CHH	.	.	.	.	.
Chr3	17381725	17381864	AT3TE70465	.	+	BRODYAGA2	MuDR	DNA	139	short	525	high	3514604	chromoarm	2637	no-CHH	no-CHH	.	.	.	.	.
Chr3	17381864	17381902	AT3TE70470	.	+	ATHPOGON3	Pogo	DNA	38	tiny	118	medium	3514743	chromoarm	2776	no-CHH	no-CHH	.	.	.	.	.
Chr3	17381902	17383858	AT3TE70475	.	+	ATHPOGON3	Pogo	DNA	1956	short	118	medium	3514781	chromoarm	1686	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	17382429	17383668	AT3TE70480	.	+	SIMPLEHAT2	HAT	DNA	1239	short	73	medium	3515308	chromoarm	1876	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	17383858	17384007	AT3TE70485	.	+	HELITRONY3	Helitron	RC	149	short	1399	high	3516737	chromoarm	1537	no-CHH	no-CHH	.	.	.	.	.
Chr3	17384007	17384078	AT3TE70490	.	+	ATREP3	Helitron	RC	71	tiny	1439	high	3516886	chromoarm	1466	no-CHH	no-CHH	.	.	.	.	.
Chr3	17391429	17392246	AT3TE70520	.	+	ATLINEIII	L1	LINE	817	short	196	medium	3524308	chromoarm	986	no-CHH	no-CHH	.	.	.	.	.
Chr3	17392516	17393357	AT3TE70525	.	+	ATGP2N	Gypsy	LTR	841	short	54	medium	3525395	chromoarm	2073	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	17393357	17395137	AT3TE70530	.	-	ATGP2N	Gypsy	LTR	1780	short	54	medium	3526236	chromoarm	2914	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	17395719	17395945	AT3TE70535	.	-	ATREP4	Helitron	RC	226	short	832	high	3528598	chromoarm	4178	no-CHH	no-CHH	.	.	.	.	.
Chr3	17395945	17396011	AT3TE70540	.	-	ATREP5	Helitron	RC	66	tiny	624	high	3528824	chromoarm	4112	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	17396012	17396380	AT3TE70545	.	-	HELITRONY1B	Helitron	RC	369	short	414	high	3528890	chromoarm	3743	.	.	.	.	.	.	.
Chr3	17396381	17396404	AT3TE70550	.	-	ATREP3	Helitron	RC	24	tiny	1439	high	3529259	chromoarm	3719	.	.	.	.	.	.	.
Chr3	17396404	17397020	AT3TE70555	.	+	ATHATN7	HAT	DNA	616	short	71	medium	3529283	chromoarm	3103	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	17397020	17397647	AT3TE70560	.	+	ATREP3	Helitron	RC	627	short	1439	high	3529899	chromoarm	2476	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	17397647	17398117	AT3TE70565	.	+	HELITRONY1D	Helitron	RC	470	short	756	high	3530526	chromoarm	2006	no-CHH	no-CHH	.	.	.	.	.
Chr3	17399608	17400005	AT3TE70570	.	-	HELITRONY3	Helitron	RC	397	short	1399	high	3532487	chromoarm	118	no-CHH	no-CHH	.	.	.	.	.
Chr3	17401943	17401995	AT3TE70575	.	-	ATREP1	Helitron	RC	52	tiny	498	high	3534822	chromoarm	377	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	17401995	17402550	AT3TE70580	.	-	ATREP2	Helitron	RC	555	short	164	medium	3534874	chromoarm	429	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	17402566	17402795	AT3TE70585	.	-	ARNOLD3	MuDR	DNA	229	short	45	low	3535445	chromoarm	1000	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	17402795	17417981	AT3TE70590	.	-	ARNOLD3	MuDR	DNA	15186	long	45	low	3535674	chromoarm	1229	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	17402735,17408841,17410194,17417801	17407968,17411132,17411931,17414287	+,+,+,-	transcript_id-"e9e0bda9-bc41-40fb-9263-451b7926566c|27",transcript_id-"6fc40424-0755-40d0-b885-44dbe38e598b|4",transcript_id-"f4663362-8506-4327-888e-a60a9b3cf10c|3",transcript_id-"09270c3b-6fee-44a5-9139-38f227f7a2b4|3"
Chr3	17417991	17418433	AT3TE70595	.	+	ATREP15	Helitron	RC	442	short	1003	high	3550870	chromoarm	2172	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	17418433	17420099	AT3TE70600	.	-	HELITRONY3	Helitron	RC	1666	short	1399	high	3551312	chromoarm	506	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	17420099	17420173	AT3TE70605	.	-	HELITRONY3	Helitron	RC	74	tiny	1399	high	3552978	chromoarm	432	no-CHH	no-CHH	.	.	.	.	.
Chr3	17421064	17421397	AT3TE70610	.	-	ATCOPIA57	Copia	LTR	333	short	48	low	3553943	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	17425804	17426645	AT3TE70620	.	+	ATREP3	Helitron	RC	841	short	1439	high	3558683	chromoarm	1408	no-CHH	no-CHH	.	.	.	.	.
Chr3	17426645	17426735	AT3TE70625	.	-	HELITRONY3	Helitron	RC	90	tiny	1399	high	3559524	chromoarm	1318	no-CHH	no-CHH	.	.	.	.	.
Chr3	17426735	17427605	AT3TE70630	.	+	ATREP4	Helitron	RC	870	short	832	high	3559614	chromoarm	448	no-CHH	no-CHH	.	.	.	.	.
Chr3	17429621	17437290	AT3TE70635	.	+	VANDAL6	MuDR	DNA	7669	long	89	medium	3562500	chromoarm	66	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	17429795,17433099,17433102,17433860,17437035	17432560,17434076,17434158,17434117,17434345	+,+,+,+,-	transcript_id-"23267aaf-217c-4888-8857-9cba404ec8ea|3",transcript_id-"02cc88b3-aca9-4c92-ab1f-beb9532f4359|28",transcript_id-"418c3796-d2d5-49d3-87bd-465edfa29108|7",transcript_id-"ca8d44f5-49f0-45de-8025-d35c30440547|5",transcript_id-"3b159450-fd5f-41e7-8aaa-77bfec65ddab|9"
Chr3	17437546	17437699	AT3TE70640	.	-	ATHATN3	HAT	DNA	153	short	70	medium	3570425	chromoarm	436	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	17450727	17450900	AT3TE70700	.	-	BRODYAGA1A	MuDR	DNA	173	short	586	high	3583606	chromoarm	211	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	17469765	17469787	AT3TE70780	.	+	ATREP12	Helitron	RC	22	tiny	22	low	3602644	chromoarm	305	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	17469787	17471246	AT3TE70785	.	+	ATREP12	Helitron	RC	1459	short	22	low	3602666	chromoarm	327	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	17475276	17475891	AT3TE70795	.	-	ATREP11	Helitron	RC	615	short	841	high	3608155	chromoarm	1067	no-CHH	no-CHH	.	.	.	.	.
Chr3	17477953	17478412	AT3TE70800	.	+	HELITRONY1D	Helitron	RC	459	short	756	high	3610832	chromoarm	2385	no-CHH	no-CHH	.	.	.	.	.
Chr3	17503005	17503228	AT3TE70910	.	-	ATREP3	Helitron	RC	223	short	1439	high	3635884	chromoarm	1047	no-CHH	no-CHH	.	.	.	.	.
Chr3	17503228	17503996	AT3TE70915	.	-	HELITRONY1D	Helitron	RC	768	short	756	high	3636107	chromoarm	279	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	17512402	17513083	AT3TE70950	.	-	BRODYAGA1	MuDR	DNA	681	short	251	high	3645281	chromoarm	573	no-CHH	no-CHH	.	.	.	.	.
Chr3	17515738	17516089	AT3TE70960	.	-	BRODYAGA2	MuDR	DNA	351	short	525	high	3648617	chromoarm	870	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr3	17519171	17519221	AT3TE70970	.	-	HELITRONY1B	Helitron	RC	50	tiny	414	high	3652050	chromoarm	14	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	17519221	17519994	AT3TE70975	.	+	ATREP11	Helitron	RC	773	short	841	high	3652100	chromoarm	64	no-CHH	no-CHH	.	.	.	.	.
Chr3	17519994	17520043	AT3TE70980	.	-	BRODYAGA2	MuDR	DNA	49	tiny	525	high	3652873	chromoarm	837	no-CHH	no-CHH	.	.	.	.	.
Chr3	17520043	17520088	AT3TE70985	.	-	HELITRON2	Helitron	RC	45	tiny	194	medium	3652922	chromoarm	886	no-CHH	no-CHH	.	.	.	.	.
Chr3	17531511	17532377	AT3TE71030	.	+	SIMPLEHAT2	HAT	DNA	866	short	73	medium	3664390	chromoarm	309	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	17537580	17537789	AT3TE71050	.	+	ATREP5	Helitron	RC	209	short	624	high	3670459	chromoarm	65	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	17541237	17541443	AT3TE71060	.	+	LIMPET1	MuDR	DNA	206	short	116	medium	3674116	chromoarm	202	no-CHH	no-CHH	.	.	.	.	.
Chr3	17545609	17545738	AT3TE71070	.	-	ATREP10B	Helitron	RC	129	short	491	high	3678488	chromoarm	3439	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	17545739	17546431	AT3TE71075	.	-	BRODYAGA2	MuDR	DNA	693	short	525	high	3678617	chromoarm	2746	.	.	.	.	.	.	.
Chr3	17546431	17546877	AT3TE71080	.	-	ATREP15	Helitron	RC	446	short	1003	high	3679310	chromoarm	2300	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	17547317	17548177	AT3TE71085	.	-	ATREP15	Helitron	RC	860	short	1003	high	3680196	chromoarm	1000	no-CHH	no-CHH	.	.	.	.	.
Chr3	17553209	17554100	AT3TE71100	.	+	HELITRON2	Helitron	RC	891	short	194	medium	3686088	chromoarm	2005	no-CHH	no-CHH	.	.	.	.	.
Chr3	17554100	17554157	AT3TE71105	.	-	BRODYAGA2	MuDR	DNA	57	tiny	525	high	3686979	chromoarm	2896	no-CHH	no-CHH	.	.	.	.	.
Chr3	17554504	17555257	AT3TE71110	.	+	ATREP10A	Helitron	RC	753	short	279	high	3687383	chromoarm	3300	no-CHH	no-CHH	.	.	.	.	.
Chr3	17557131	17557802	AT3TE71115	.	-	HELITRONY1D	Helitron	RC	671	short	756	high	3690010	chromoarm	1201	no-CHH	no-CHH	.	.	.	.	.
Chr3	17557356	17557698	AT3TE71120	.	+	BRODYAGA1A	MuDR	DNA	342	short	586	high	3690235	chromoarm	1305	no-CHH	no-CHH	.	.	.	.	.
Chr3	17565667	17565814	AT3TE71150	.	-	ATREP6	Helitron	RC	148	short	181	medium	3698545	chromoarm	504	.	.	.	.	.	.	.
Chr3	17565814	17566336	AT3TE71155	.	+	AT9TSD1	MuDR	DNA	522	short	55	medium	3698693	chromoarm	652	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	17566336	17566400	AT3TE71160	.	-	BRODYAGA1A	MuDR	DNA	64	tiny	586	high	3699215	chromoarm	1174	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	17566400	17566448	AT3TE71165	.	-	VANDAL8	MuDR	DNA	48	tiny	123	medium	3699279	chromoarm	1238	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	17577291	17578250	AT3TE71210	.	-	ATIS112A	Harbinger	DNA	959	short	173	medium	3710170	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	17580008	17580241	AT3TE71215	.	-	ATLINE1_6	L1	LINE	233	short	129	medium	3712887	chromoarm	1111	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	17586787	17587080	AT3TE71240	.	-	ATMU7	MuDR	DNA	293	short	32	low	3719666	chromoarm	209	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	17587218	17587514	AT3TE71245	.	+	ATMU7	MuDR	DNA	296	short	32	low	3720097	chromoarm	640	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	17588438	17589308	AT3TE71250	.	-	HELITRONY1E	Helitron	RC	870	short	447	high	3721317	chromoarm	1420	no-CHH	no-CHH	.	.	.	.	.
Chr3	17589308	17589390	AT3TE71255	.	-	HELITRONY1B	Helitron	RC	82	tiny	414	high	3722187	chromoarm	1338	no-CHH	no-CHH	.	.	.	.	.
Chr3	17605987	17606251	AT3TE71320	.	+	DT1	Mariner	DNA	264	short	123	medium	3738866	chromoarm	175	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	17619074	17619236	AT3TE71370	.	+	RathE1_cons	.	RathE1_cons	162	short	213	high	3751953	chromoarm	0	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	17622862	17623916	AT3TE71380	.	+	ATREP15	Helitron	RC	1054	short	1003	high	3755741	chromoarm	184	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	17635753	17636065	AT3TE71430	.	-	HELITRONY1D	Helitron	RC	312	short	756	high	3768632	chromoarm	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	17640498	17640546	AT3TE71440	.	+	HELITRONY1D	Helitron	RC	48	tiny	756	high	3773377	chromoarm	1481	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	17640546	17641085	AT3TE71445	.	+	ATCOPIA30	Copia	LTR	539	short	33	low	3773425	chromoarm	1529	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	17641085	17641390	AT3TE71450	.	-	HELITRON2	Helitron	RC	305	short	194	medium	3773964	chromoarm	2068	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	17642261	17642735	AT3TE71455	.	-	HELITRON2	Helitron	RC	474	short	194	medium	3775140	chromoarm	1698	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	17642735	17642848	AT3TE71460	.	+	BRODYAGA2	MuDR	DNA	113	short	525	high	3775614	chromoarm	1585	no-CHH	no-CHH	.	.	.	.	.
Chr3	17658722	17659036	AT3TE71530	.	+	ATLINE1A	L1	LINE	314	short	289	high	3791601	chromoarm	453	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	17661197	17661753	AT3TE71535	.	+	ATTIR16T3A	.	DNA	556	short	106	medium	3794076	chromoarm	190	no-CHH	no-CHH	.	.	.	.	.
Chr3	17661753	17662585	AT3TE71540	.	+	ATREP3	Helitron	RC	832	short	1439	high	3794632	chromoarm	746	PolIV-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	17662093	17662499	AT3TE71545	.	-	ATTIR16T3A	.	DNA	406	short	106	medium	3794972	chromoarm	1086	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	17662499	17662540	AT3TE71550	.	+	ATTIR16T3A	.	DNA	41	tiny	106	medium	3795378	chromoarm	1492	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	17662650	17663055	AT3TE71555	.	+	HELITRONY1D	Helitron	RC	406	short	756	high	3795528	chromoarm	1642	.	.	LowExpressed	.	.	.	.
Chr3	17663056	17663348	AT3TE71560	.	+	ATREP10D	Helitron	RC	293	short	1295	high	3795934	chromoarm	2048	.	.	LowExpressed	.	.	.	.
Chr3	17663348	17666896	AT3TE71565	.	-	ATLINE1_4	L1	LINE	3548	medium	102	medium	3796227	chromoarm	275	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	17682029	17682159	AT3TE71620	.	-	HELITRONY1A	Helitron	RC	130	short	271	high	3814908	chromoarm	585	no-CHH	no-CHH	.	.	.	.	.
Chr3	17682159	17682953	AT3TE71625	.	-	ATREP4	Helitron	RC	794	short	832	high	3815038	chromoarm	0	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	17700915	17701732	AT3TE71700	.	-	ATREP5	Helitron	RC	817	short	624	high	3833794	chromoarm	144	no-CHH	no-CHH	.	.	.	.	.
Chr3	17701732	17701781	AT3TE71705	.	-	HELITRONY1D	Helitron	RC	49	tiny	756	high	3834611	chromoarm	961	no-CHH	no-CHH	.	.	.	.	.
Chr3	17706605	17707394	AT3TE71720	.	+	ATREP4	Helitron	RC	789	short	832	high	3839484	chromoarm	701	no-CHH	no-CHH	.	.	.	.	.
Chr3	17707394	17707449	AT3TE71725	.	+	ATREP19	.	DNA	55	tiny	189	medium	3840273	chromoarm	646	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	17707461	17707608	AT3TE71730	.	+	RathE1_cons	.	RathE1_cons	147	short	213	high	3840340	chromoarm	487	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	17707734	17707884	AT3TE71735	.	-	ATIS112A	Harbinger	DNA	150	short	173	medium	3840613	chromoarm	211	no-CHH	no-CHH	.	.	.	.	.
Chr3	17708170	17709119	AT3TE71740	.	-	ATIS112A	Harbinger	DNA	949	short	173	medium	3841049	chromoarm	0	no-CHH	no-CHH	ExpressedAndAnnotated	17708925,17708960	17707932,17708005	-,-	transcript_id-"df99ecd6-0857-4507-bd15-b27a714a99a5|21",transcript_id-"7dd02751-b4c7-418c-90be-ff638868a8c6|49"
Chr3	17716274	17716828	AT3TE71770	.	+	ATREP1	Helitron	RC	554	short	498	high	3849153	chromoarm	223	no-CHH	no-CHH	.	.	.	.	.
Chr3	17716828	17716994	AT3TE71775	.	-	HELITRON4	Helitron	RC	166	short	199	medium	3849707	chromoarm	87	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	17729458	17731271	AT3TE71820	.	+	ATREP3	Helitron	RC	1813	short	1439	high	3862337	chromoarm	289	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	17731271	17731422	AT3TE71825	.	+	HELITRONY3	Helitron	RC	151	short	1399	high	3864150	chromoarm	138	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	17741398	17741861	AT3TE71860	.	+	ATLINE1A	L1	LINE	463	short	289	high	3874277	chromoarm	1372	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	17750673	17750806	AT3TE71900	.	-	ATDNAI27T9B	MuDR	DNA	133	short	43	low	3883552	chromoarm	71	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	17762459	17762974	AT3TE71950	.	-	ATREP15	Helitron	RC	515	short	1003	high	3895338	chromoarm	136	no-CHH	no-CHH	.	.	.	.	.
Chr3	17763033	17763220	AT3TE71955	.	-	ATDNAI27T9C	MuDR	DNA	187	short	108	medium	3895912	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	17775632	17775905	AT3TE72000	.	+	ATDNAI27T9A	MuDR	DNA	273	short	116	medium	3908511	chromoarm	45	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	17776440	17778148	AT3TE72005	.	+	ATREP3	Helitron	RC	1708	short	1439	high	3909319	chromoarm	322	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	17778148	17778261	AT3TE72010	.	+	ATREP3	Helitron	RC	113	short	1439	high	3911027	chromoarm	209	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	17796433	17797012	AT3TE72090	.	-	ATREP15	Helitron	RC	579	short	1003	high	3929312	chromoarm	615	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	17839654	17839726	AT3TE72270	.	+	ATREP1	Helitron	RC	72	tiny	498	high	3972533	chromoarm	927	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	17839726	17840674	AT3TE72275	.	+	ATREP15	Helitron	RC	948	short	1003	high	3972605	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	17842048	17842311	AT3TE72280	.	-	ATTIRTA1	Tc1	DNA	264	short	95	medium	3974926	chromoarm	790	.	.	.	.	.	.	.
Chr3	17845649	17845955	AT3TE72290	.	-	ATREP5	Helitron	RC	306	short	624	high	3978528	chromoarm	117	no-CHH	no-CHH	.	.	.	.	.
Chr3	17853982	17854059	AT3TE72320	.	+	ATCOPIA57	Copia	LTR	77	tiny	48	low	3986861	chromoarm	425	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	17857168	17857211	AT3TE72330	.	+	ATGP2N	Gypsy	LTR	43	tiny	54	medium	3990047	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	17860621	17860712	AT3TE72340	.	-	ATIS112A	Harbinger	DNA	91	tiny	173	medium	3993500	chromoarm	1798	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	17860712	17860822	AT3TE72345	.	-	ATREP4	Helitron	RC	110	short	832	high	3993591	chromoarm	1889	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	17860822	17860888	AT3TE72350	.	-	HELITRONY1D	Helitron	RC	66	tiny	756	high	3993701	chromoarm	1999	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	17860888	17861979	AT3TE72355	.	-	ATREP3	Helitron	RC	1091	short	1439	high	3993767	chromoarm	2065	no-RdDM	no-CHH	.	.	.	.	.
Chr3	17861979	17862217	AT3TE72360	.	+	HELITRONY1E	Helitron	RC	238	short	447	high	3994858	chromoarm	3156	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	17862217	17862331	AT3TE72365	.	+	ATENSPM9	En-Spm	DNA	114	short	97	medium	3995096	chromoarm	3394	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	17863753	17865925	AT3TE72370	.	+	Unassigned	.	Unassigned	2172	medium	.	low	3996632	chromoarm	607	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	17878673	17879004	AT3TE72420	.	-	BRODYAGA1A	MuDR	DNA	331	short	586	high	4011552	chromoarm	500	no-CHH	no-CHH	.	.	.	.	.
Chr3	17899378	17899619	AT3TE72510	.	-	ATDNATA1	Mariner	DNA	241	short	28	low	4032257	chromoarm	304	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	17914130	17914576	AT3TE72570	.	-	ATCOPIA73	Copia	LTR	446	short	3	low	4047009	chromoarm	1891	no-CHH	no-CHH	.	.	.	.	.
Chr3	17914578	17914730	AT3TE72575	.	-	ATCOPIA38B	Copia	LTR	152	short	5	low	4047457	chromoarm	1737	no-CHH	no-CHH	.	.	.	.	.
Chr3	17928491	17928515	AT3TE72630	.	+	BOMZH2	MuDR	DNA	24	tiny	47	low	4061370	chromoarm	391	no-CHH	no-CHH	.	.	.	.	.
Chr3	17928517	17928780	AT3TE72635	.	-	ATMU5	MuDR	DNA	263	short	24	low	4061396	chromoarm	417	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	17928780	17928898	AT3TE72640	.	+	ATMU6	MuDR	DNA	118	short	26	low	4061659	chromoarm	680	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr3	17928966	17929554	AT3TE72645	.	+	ARNOLD1	MuDR	DNA	588	short	39	low	4061845	chromoarm	188	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	17945359	17945436	AT3TE72710	.	-	ATSINE4	.	SINE	77	tiny	98	medium	4078238	chromoarm	571	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	17947283	17948202	AT3TE72715	.	+	ATREP15	Helitron	RC	919	short	1003	high	4080162	chromoarm	1293	no-CHH	no-CHH	.	.	.	.	.
Chr3	17947671	17947995	AT3TE72720	.	-	ATTIRX1A	.	DNA	324	short	63	medium	4080550	chromoarm	1500	no-CHH	no-CHH	.	.	.	.	.
Chr3	17973414	17973660	AT3TE72830	.	+	BRODYAGA2	MuDR	DNA	246	short	525	high	4106293	chromoarm	1443	no-CHH	no-CHH	.	.	.	.	.
Chr3	17973660	17974313	AT3TE72835	.	-	ATREP11	Helitron	RC	653	short	841	high	4106539	chromoarm	790	no-CHH	no-CHH	.	.	.	.	.
Chr3	17974313	17974575	AT3TE72840	.	+	ARNOLDY2	MuDR	DNA	262	short	288	high	4107192	chromoarm	528	no-CHH	no-CHH	.	.	.	.	.
Chr3	17978744	17983946	AT3TE72850	.	-	ATCOPIA44	Copia	LTR	5202	long	12	low	4111623	chromoarm	2120	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	17983946	17983984	AT3TE72855	.	-	ATCOPIA44	Copia	LTR	38	tiny	12	low	4116825	chromoarm	3574	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	17984180	17985366	AT3TE72860	.	+	ATCOPIA67	Copia	LTR	1186	short	15	low	4117059	chromoarm	2192	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	17984421	17984975	AT3TE72865	.	+	ATCOPIA58	Copia	LTR	554	short	18	low	4117300	chromoarm	2583	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	17985366	17985452	AT3TE72870	.	+	ATCOPIA2	Copia	LTR	86	tiny	6	low	4118245	chromoarm	2106	PolIV-and-RDR6-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	17985452	17985524	AT3TE72875	.	-	ATREP10B	Helitron	RC	72	tiny	491	high	4118331	chromoarm	2034	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	17985524	17985637	AT3TE72880	.	-	ATREP4	Helitron	RC	113	short	832	high	4118403	chromoarm	1921	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	17985637	17986901	AT3TE72885	.	+	ATREP15	Helitron	RC	1264	short	1003	high	4118516	chromoarm	657	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	17986901	17987117	AT3TE72890	.	+	ATREP4	Helitron	RC	216	short	832	high	4119780	chromoarm	441	no-CHH	no-CHH	.	.	.	.	.
Chr3	17998511	17998962	AT3TE72940	.	-	ATREP15	Helitron	RC	451	short	1003	high	4131390	chromoarm	2567	no-CHH	no-CHH	.	.	.	.	.
Chr3	18018749	18018776	AT3TE73020	.	+	ATREP1	Helitron	RC	27	tiny	498	high	4151628	chromoarm	0	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	18018776	18019898	AT3TE73025	.	+	ATREP3	Helitron	RC	1122	short	1439	high	4151655	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	18019898	18019926	AT3TE73030	.	+	ATREP3	Helitron	RC	28	tiny	1439	high	4152777	chromoarm	1116	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	18019926	18020236	AT3TE73035	.	+	ATREP3	Helitron	RC	310	short	1439	high	4152805	chromoarm	1144	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	18020236	18020296	AT3TE73040	.	+	ATREP11	Helitron	RC	60	tiny	841	high	4153115	chromoarm	1353	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	18022698	18024206	AT3TE73050	.	+	ATREP10D	Helitron	RC	1508	short	1295	high	4155577	chromoarm	374	no-CHH	no-CHH	.	.	.	.	.
Chr3	18022881	18023672	AT3TE73055	.	-	AT9TSD1	MuDR	DNA	791	short	55	medium	4155760	chromoarm	557	no-CHH	no-CHH	.	.	.	.	.
Chr3	18023672	18023752	AT3TE73060	.	+	ATHPOGON3	Pogo	DNA	80	tiny	118	medium	4156551	chromoarm	1348	no-CHH	no-CHH	.	.	.	.	.
Chr3	18027386	18027452	AT3TE73070	.	+	ATCOPIA96	Copia	LTR	66	tiny	16	low	4160265	chromoarm	2206	no-CHH	no-CHH	.	.	.	.	.
Chr3	18027452	18027552	AT3TE73075	.	-	ATCOPIA96	Copia	LTR	100	short	16	low	4160331	chromoarm	2106	no-CHH	no-CHH	.	.	.	.	.
Chr3	18040631	18040784	AT3TE73130	.	+	ATMU6N1	MuDR	DNA	153	short	39	low	4173510	chromoarm	239	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	18047099	18047752	AT3TE73160	.	-	BRODYAGA1	MuDR	DNA	653	short	251	high	4179978	chromoarm	0	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	18047752	18048046	AT3TE73165	.	+	ATMU10	MuDR	DNA	294	short	87	medium	4180631	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	18048057	18048088	AT3TE73170	.	-	BRODYAGA1	MuDR	DNA	31	tiny	251	high	4180936	chromoarm	0	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	18052272	18052673	AT3TE73180	.	-	HELITRON2	Helitron	RC	401	short	194	medium	4185151	chromoarm	140	no-CHH	no-CHH	.	.	.	.	.
Chr3	18055220	18056033	AT3TE73190	.	-	TAG3N1	HAT	DNA	813	short	97	medium	4188099	chromoarm	557	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	18058860	18059088	AT3TE73200	.	-	ATMUN1	MuDR	DNA	228	short	107	medium	4191739	chromoarm	4197	no-CHH	no-CHH	.	.	.	.	.
Chr3	18059088	18059888	AT3TE73205	.	-	TAG3N1	HAT	DNA	800	short	97	medium	4191967	chromoarm	4425	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	18060832	18061697	AT3TE73210	.	+	ATREP3	Helitron	RC	865	short	1439	high	4193711	chromoarm	6169	no-CHH	no-CHH	.	.	.	.	.
Chr3	18061697	18062067	AT3TE73215	.	+	ATREP11	Helitron	RC	370	short	841	high	4194576	chromoarm	7034	no-CHH	no-CHH	.	.	.	.	.
Chr3	18062067	18062270	AT3TE73220	.	-	HELITRONY3	Helitron	RC	203	short	1399	high	4194946	chromoarm	7404	no-CHH	no-CHH	.	.	.	.	.
Chr3	18062270	18062633	AT3TE73225	.	+	ATTIRX1C	.	DNA	363	short	39	low	4195149	chromoarm	7607	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	18062633	18063039	AT3TE73230	.	-	ATTIRX1C	.	DNA	406	short	39	low	4195512	chromoarm	7970	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	18063039	18064150	AT3TE73235	.	-	HELITRONY3	Helitron	RC	1111	short	1399	high	4195918	chromoarm	8087	no-CHH	no-CHH	.	.	.	.	.
Chr3	18064810	18065477	AT3TE73240	.	-	HELITRONY1D	Helitron	RC	667	short	756	high	4197689	chromoarm	6760	no-CHH	no-CHH	.	.	.	.	.
Chr3	18068394	18068980	AT3TE73250	.	-	HELITRONY3	Helitron	RC	586	short	1399	high	4201273	chromoarm	3257	no-CHH	no-CHH	.	.	.	.	.
Chr3	18069543	18069892	AT3TE73255	.	+	BRODYAGA1A	MuDR	DNA	349	short	586	high	4202422	chromoarm	2345	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	18070093	18070237	AT3TE73260	.	+	ATDNAI27T9C	MuDR	DNA	145	short	108	medium	4202971	chromoarm	2000	.	.	LowExpressed	.	.	.	.
Chr3	18070237	18070258	AT3TE73265	.	+	VANDAL18NB	MuDR	DNA	21	tiny	19	low	4203116	chromoarm	1979	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	18075075	18075561	AT3TE73280	.	-	ATREP1	Helitron	RC	486	short	498	high	4207954	chromoarm	340	no-CHH	no-CHH	.	.	.	.	.
Chr3	18075561	18075692	AT3TE73285	.	+	HELITRONY1D	Helitron	RC	131	short	756	high	4208440	chromoarm	209	no-CHH	no-CHH	.	.	.	.	.
Chr3	18078294	18078414	AT3TE73295	.	-	SIMPLEHAT1	HAT	DNA	120	short	56	medium	4211173	chromoarm	210	no-CHH	no-CHH	.	.	.	.	.
Chr3	18085061	18085700	AT3TE73320	.	-	ATREP3	Helitron	RC	639	short	1439	high	4217940	chromoarm	0	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	18085700	18085858	AT3TE73325	.	+	ATMU1	MuDR	DNA	158	short	59	medium	4218579	chromoarm	0	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	18085858	18086161	AT3TE73330	.	-	ATREP10D	Helitron	RC	303	short	1295	high	4218737	chromoarm	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	18086393	18086765	AT3TE73335	.	-	TAG1	HAT	DNA	372	short	28	low	4219272	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	18110241	18110680	AT3TE73430	.	-	VANDAL3	MuDR	DNA	439	short	177	medium	4243120	chromoarm	25	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	18110842	18112605	AT3TE73435	.	-	VANDAL3	MuDR	DNA	1763	short	177	medium	4243721	chromoarm	115	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	18146428	18146522	AT3TE73570	.	-	ATREP1	Helitron	RC	94	tiny	498	high	4279307	chromoarm	1494	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	18146522	18147157	AT3TE73575	.	-	ATREP2A	Helitron	RC	635	short	116	medium	4279401	chromoarm	859	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	18147157	18147621	AT3TE73580	.	+	HELITRONY1C	Helitron	RC	464	short	120	medium	4280036	chromoarm	395	no-CHH	no-CHH	.	.	.	.	.
Chr3	18155277	18155380	AT3TE73610	.	+	ATDNAI27T9A	MuDR	DNA	103	short	116	medium	4288156	chromoarm	35	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	18170844	18170960	AT3TE73680	.	-	META1	Copia	LTR	116	short	138	medium	4303723	chromoarm	184	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	18170960	18171337	AT3TE73685	.	-	ATREP1	Helitron	RC	377	short	498	high	4303839	chromoarm	300	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	18171337	18172767	AT3TE73690	.	-	ATREP2A	Helitron	RC	1430	short	116	medium	4304216	chromoarm	370	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	18172767	18172797	AT3TE73695	.	-	ATREP2A	Helitron	RC	30	tiny	116	medium	4305646	chromoarm	340	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	18175927	18176347	AT3TE73705	.	-	ATTIRX1A	.	DNA	420	short	63	medium	4308806	chromoarm	1158	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	18176775	18176882	AT3TE73710	.	+	HELITRONY1E	Helitron	RC	107	short	447	high	4309654	chromoarm	793	no-CHH	no-CHH	.	.	.	.	.
Chr3	18176898	18176940	AT3TE73715	.	-	ATTIR16T3A	.	DNA	42	tiny	106	medium	4309777	chromoarm	735	no-CHH	no-CHH	.	.	.	.	.
Chr3	18176940	18177385	AT3TE73720	.	-	ATTIR16T3A	.	DNA	445	short	106	medium	4309819	chromoarm	290	no-CHH	no-CHH	.	.	.	.	.
Chr3	18177385	18177442	AT3TE73725	.	+	ATREP5	Helitron	RC	57	tiny	624	high	4310264	chromoarm	233	no-CHH	no-CHH	.	.	.	.	.
Chr3	18177442	18177525	AT3TE73730	.	+	HELITRONY1E	Helitron	RC	83	tiny	447	high	4310321	chromoarm	150	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	18179895	18179966	AT3TE73740	.	-	ATHPOGON1	Pogo	DNA	71	tiny	174	medium	4312774	chromoarm	556	no-CHH	no-CHH	.	.	.	.	.
Chr3	18179966	18180736	AT3TE73745	.	-	ATHPOGON2	Pogo	DNA	770	short	27	low	4312845	chromoarm	627	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	18195991	18196394	AT3TE73810	.	+	ATHILA6A	Gypsy	LTR	403	short	247	high	4328870	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	18206795	18207197	AT3TE73850	.	+	BRODYAGA1A	MuDR	DNA	402	short	586	high	4339674	chromoarm	621	no-CHH	no-CHH	.	.	.	.	.
Chr3	18213460	18213567	AT3TE73880	.	-	ATHAT1	HAT	DNA	107	short	105	medium	4346339	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	18241224	18242092	AT3TE74000	.	+	ATREP11	Helitron	RC	868	short	841	high	4374103	chromoarm	63	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	18242092	18242117	AT3TE74005	.	-	BRODYAGA2	MuDR	DNA	25	tiny	525	high	4374971	chromoarm	931	no-CHH	no-CHH	.	.	.	.	.
Chr3	18242117	18242245	AT3TE74010	.	+	ATREP10A	Helitron	RC	128	short	279	high	4374996	chromoarm	956	no-CHH	no-CHH	.	.	.	.	.
Chr3	18243329	18243451	AT3TE74015	.	-	ATIS112A	Harbinger	DNA	122	short	173	medium	4376208	chromoarm	2168	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	18243802	18244528	AT3TE74020	.	+	HELITRONY3	Helitron	RC	726	short	1399	high	4376681	chromoarm	2641	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	18257603	18257820	AT3TE74080	.	-	VANDAL17	MuDR	DNA	217	short	178	medium	4390482	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	18261774	18262248	AT3TE74090	.	-	HELITRONY2	Helitron	RC	474	short	198	medium	4394653	chromoarm	506	no-CHH	no-CHH	.	.	.	.	.
Chr3	18266249	18266401	AT3TE74100	.	+	ATCOPIA87	Copia	LTR	152	short	19	low	4399128	chromoarm	390	no-CHH	no-CHH	.	.	.	.	.
Chr3	18266401	18266966	AT3TE74105	.	+	ATCOPIA87	Copia	LTR	565	short	19	low	4399280	chromoarm	433	no-CHH	no-CHH	.	.	.	.	.
Chr3	18268417	18268679	AT3TE74110	.	-	RP1_AT	.	DNA	262	short	87	medium	4401296	chromoarm	187	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	18269830	18271041	AT3TE74115	.	+	ATLINEIII	L1	LINE	1211	short	196	medium	4402709	chromoarm	1600	no-CHH	no-CHH	.	.	.	.	.
Chr3	18271637	18271892	AT3TE74120	.	+	ATLINE1_3A	L1	LINE	255	short	160	medium	4404516	chromoarm	1514	no-CHH	no-CHH	.	.	.	.	.
Chr3	18272384	18272470	AT3TE74125	.	-	ATHATN1	HAT	DNA	86	tiny	69	medium	4405263	chromoarm	936	no-CHH	no-CHH	.	.	.	.	.
Chr3	18280556	18280997	AT3TE74150	.	+	ATREP11	Helitron	RC	441	short	841	high	4413435	chromoarm	171	no-CHH	no-CHH	.	.	.	.	.
Chr3	18295435	18295637	AT3TE74210	.	-	ATREP11	Helitron	RC	202	short	841	high	4428314	chromoarm	858	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	18295637	18296205	AT3TE74215	.	+	ATREP5	Helitron	RC	568	short	624	high	4428516	chromoarm	1060	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	18296205	18296701	AT3TE74220	.	-	HELITRONY1A	Helitron	RC	496	short	271	high	4429084	chromoarm	961	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	18308139	18308350	AT3TE74270	.	+	ATMU2	MuDR	DNA	211	short	64	medium	4441018	chromoarm	233	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	18308792	18310956	AT3TE74275	.	+	AT9TSD1	MuDR	DNA	2164	medium	55	medium	4441671	chromoarm	886	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	18311156	18311384	AT3TE74280	.	-	ATMU2	MuDR	DNA	228	short	64	medium	4444035	chromoarm	524	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	18357516	18357681	AT3TE74480	.	-	RathE1_cons	.	RathE1_cons	165	short	213	high	4490395	chromoarm	1008	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	18357878	18357984	AT3TE74485	.	+	ATREP10B	Helitron	RC	106	short	491	high	4490757	chromoarm	1370	no-CHH	no-CHH	.	.	.	.	.
Chr3	18357984	18359439	AT3TE74490	.	+	ATREP6	Helitron	RC	1455	short	181	medium	4490863	chromoarm	144	no-CHH	no-CHH	.	.	.	.	.
Chr3	18359439	18359554	AT3TE74495	.	-	ATREP10D	Helitron	RC	115	short	1295	high	4492318	chromoarm	29	no-CHH	no-CHH	.	.	.	.	.
Chr3	18376547	18376992	AT3TE74560	.	-	HELITRON2	Helitron	RC	445	short	194	medium	4509426	chromoarm	828	no-CHH	no-CHH	.	.	.	.	.
Chr3	18410892	18413336	AT3TE74700	.	+	ATREP3	Helitron	RC	2444	medium	1439	high	4543771	chromoarm	353	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	18413336	18413425	AT3TE74705	.	+	HELITRONY1B	Helitron	RC	89	tiny	414	high	4546215	chromoarm	264	no-CHH	no-CHH	.	.	.	.	.
Chr3	18432136	18432221	AT3TE74780	.	-	HELITRONY1B	Helitron	RC	85	tiny	414	high	4565015	chromoarm	2248	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	18436929	18437646	AT3TE74800	.	-	HELITRONY3	Helitron	RC	717	short	1399	high	4569808	chromoarm	198	no-CHH	no-CHH	.	.	.	.	.
Chr3	18437646	18437694	AT3TE74805	.	-	ATTIR16T3A	.	DNA	48	tiny	106	medium	4570525	chromoarm	150	no-CHH	no-CHH	.	.	.	.	.
Chr3	18457585	18458243	AT3TE74890	.	+	ATREP10D	Helitron	RC	658	short	1295	high	4590464	chromoarm	1546	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	18458243	18458917	AT3TE74895	.	+	ATN9_1	MuDR	DNA	674	short	65	medium	4591122	chromoarm	2204	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	18459169	18459299	AT3TE74900	.	-	ATSINE4	.	SINE	130	short	98	medium	4592048	chromoarm	1834	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	18459992	18460664	AT3TE74905	.	+	ATCOPIA75	Copia	LTR	672	short	20	low	4592871	chromoarm	469	no-CHH	no-CHH	.	.	.	.	.
Chr3	18460664	18460685	AT3TE74910	.	+	ATCOPIA75	Copia	LTR	21	tiny	20	low	4593543	chromoarm	448	no-CHH	no-CHH	.	.	.	.	.
Chr3	18470303	18470947	AT3TE74950	.	+	HELITRONY1B	Helitron	RC	644	short	414	high	4603182	chromoarm	109	no-CHH	no-CHH	.	.	.	.	.
Chr3	18477810	18478050	AT3TE74980	.	+	ATHATN4	HAT	DNA	240	short	56	medium	4610689	chromoarm	1528	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	18481772	18481853	AT3TE74990	.	+	ATREP10B	Helitron	RC	81	tiny	491	high	4614651	chromoarm	50	no-CHH	no-CHH	.	.	.	.	.
Chr3	18481853	18482290	AT3TE74995	.	+	BRODYAGA1	MuDR	DNA	437	short	251	high	4614732	chromoarm	92	no-CHH	no-CHH	.	.	.	.	.
Chr3	18494603	18494752	AT3TE75040	.	+	ATREP15	Helitron	RC	149	short	1003	high	4627482	chromoarm	582	no-CHH	no-CHH	.	.	.	.	.
Chr3	18494752	18496044	AT3TE75045	.	-	ATREP1	Helitron	RC	1292	short	498	high	4627631	chromoarm	731	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	18496044	18496288	AT3TE75050	.	+	ATREP10D	Helitron	RC	244	short	1295	high	4628923	chromoarm	618	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	18498469	18498603	AT3TE75055	.	-	ATCOPIA80	Copia	LTR	134	short	7	low	4631348	chromoarm	71	no-CHH	no-CHH	.	.	.	.	.
Chr3	18503702	18503840	AT3TE75070	.	-	ATLINE1_3A	L1	LINE	138	short	160	medium	4636581	chromoarm	470	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	18508417	18508861	AT3TE75080	.	-	ATHILA7	Gypsy	LTR	444	short	134	medium	4641296	chromoarm	718	no-CHH	no-CHH	.	.	.	.	.
Chr3	18511772	18511886	AT3TE75090	.	-	ATLINE1A	L1	LINE	114	short	289	high	4644651	chromoarm	879	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	18517016	18518053	AT3TE75110	.	-	ATREP15	Helitron	RC	1037	short	1003	high	4649895	chromoarm	1714	no-CHH	no-CHH	.	.	.	.	.
Chr3	18518881	18519390	AT3TE75115	.	-	ATREP11	Helitron	RC	509	short	841	high	4651760	chromoarm	3179	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	18519391	18519642	AT3TE75120	.	-	ATLINE1_3A	L1	LINE	252	short	160	medium	4652269	chromoarm	2927	.	.	.	.	.	.	.
Chr3	18539644	18539850	AT3TE75210	.	+	BRODYAGA2	MuDR	DNA	206	short	525	high	4672523	chromoarm	87	no-CHH	no-CHH	.	.	.	.	.
Chr3	18539850	18540617	AT3TE75215	.	-	ATREP10B	Helitron	RC	767	short	491	high	4672729	chromoarm	293	no-CHH	no-CHH	.	.	.	.	.
Chr3	18540617	18540676	AT3TE75220	.	-	BRODYAGA2	MuDR	DNA	59	tiny	525	high	4673496	chromoarm	1060	no-CHH	no-CHH	.	.	.	.	.
Chr3	18542705	18543377	AT3TE75225	.	-	ATREP5	Helitron	RC	672	short	624	high	4675584	chromoarm	18	no-CHH	no-CHH	.	.	.	.	.
Chr3	18543377	18543433	AT3TE75230	.	+	BRODYAGA1A	MuDR	DNA	56	tiny	586	high	4676256	chromoarm	126	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	18543433	18543493	AT3TE75235	.	-	HELITRONY1C	Helitron	RC	60	tiny	120	medium	4676312	chromoarm	66	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	18544268	18545573	AT3TE75240	.	-	ATREP10D	Helitron	RC	1305	short	1295	high	4677147	chromoarm	559	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	18551384	18551893	AT3TE75260	.	+	ATREP10D	Helitron	RC	509	short	1295	high	4684263	chromoarm	365	no-CHH	no-CHH	.	.	.	.	.
Chr3	18551893	18553330	AT3TE75265	.	+	ATREP1	Helitron	RC	1437	short	498	high	4684772	chromoarm	807	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	18553330	18553490	AT3TE75270	.	-	HELITRONY3	Helitron	RC	160	short	1399	high	4686209	chromoarm	647	no-CHH	no-CHH	.	.	.	.	.
Chr3	18553490	18554038	AT3TE75275	.	+	ATREP3	Helitron	RC	548	short	1439	high	4686369	chromoarm	99	no-CHH	no-CHH	.	.	.	.	.
Chr3	18561139	18561241	AT3TE75300	.	+	RathE1_cons	.	RathE1_cons	102	short	213	high	4694018	chromoarm	2088	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	18562473	18562613	AT3TE75305	.	+	ATREP3	Helitron	RC	140	short	1439	high	4695352	chromoarm	2708	no-CHH	no-CHH	.	.	.	.	.
Chr3	18562613	18563223	AT3TE75310	.	-	HELITRONY2	Helitron	RC	610	short	198	medium	4695492	chromoarm	2098	no-CHH	no-CHH	.	.	.	.	.
Chr3	18584729	18584763	AT3TE75400	.	+	ATREP3	Helitron	RC	34	tiny	1439	high	4717608	chromoarm	393	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	18584763	18585163	AT3TE75405	.	+	ATREP3	Helitron	RC	400	short	1439	high	4717642	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	18597905	18598641	AT3TE75450	.	-	ATDNA2T9A	MuDR	DNA	736	short	48	low	4730784	chromoarm	184	no-CHH	no-CHH	.	.	.	.	.
Chr3	18604549	18604665	AT3TE75480	.	-	ATMUN1	MuDR	DNA	116	short	107	medium	4737428	chromoarm	277	no-CHH	no-CHH	.	.	.	.	.
Chr3	18607036	18607218	AT3TE75490	.	-	VANDAL1	MuDR	DNA	182	short	80	medium	4739915	chromoarm	0	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	18611703	18612106	AT3TE75500	.	-	ATLANTYS3	Gypsy	LTR	403	short	142	medium	4744582	chromoarm	355	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	18616827	18617585	AT3TE75520	.	+	HELITRONY3	Helitron	RC	758	short	1399	high	4749706	chromoarm	86	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	18629701	18629744	AT3TE75570	.	-	ATREP10D	Helitron	RC	43	tiny	1295	high	4762580	chromoarm	287	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	18629745	18632620	AT3TE75575	.	-	ATDNA2T9A	MuDR	DNA	2875	medium	48	low	4762624	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	18630627	18630686	AT3TE75580	.	-	ATDNA2T9C	MuDR	DNA	59	tiny	242	high	4763506	chromoarm	149	no-CHH	no-CHH	.	.	.	.	.
Chr3	18633255	18633869	AT3TE75590	.	+	ATREP10D	Helitron	RC	614	short	1295	high	4766134	chromoarm	817	no-CHH	no-CHH	.	.	.	.	.
Chr3	18633869	18634492	AT3TE75595	.	-	ATREP2	Helitron	RC	623	short	164	medium	4766748	chromoarm	194	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	18645639	18645807	AT3TE75640	.	-	ATIS112A	Harbinger	DNA	168	short	173	medium	4778518	chromoarm	250	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr3	18646972	18647223	AT3TE75645	.	-	ATIS112A	Harbinger	DNA	251	short	173	medium	4779851	chromoarm	1072	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	18649968	18650563	AT3TE75655	.	-	HELITRONY3	Helitron	RC	595	short	1399	high	4782847	chromoarm	644	no-CHH	no-CHH	.	.	.	.	.
Chr3	18652062	18652084	AT3TE75660	.	-	SIMPLEGUY1	Harbinger	DNA	22	tiny	116	medium	4784941	chromoarm	1751	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	18652084	18653144	AT3TE75665	.	+	SIMPLEGUY1	Harbinger	DNA	1060	short	116	medium	4784963	chromoarm	691	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	18653288	18653388	AT3TE75670	.	-	ATENSPM10	En-Spm	DNA	100	short	81	medium	4786167	chromoarm	447	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	18664117	18664656	AT3TE75720	.	+	HELITRONY1D	Helitron	RC	539	short	756	high	4796996	chromoarm	676	no-CHH	no-CHH	.	.	.	.	.
Chr3	18670173	18670745	AT3TE75740	.	+	ATREP1	Helitron	RC	572	short	498	high	4803052	chromoarm	2160	no-CHH	no-CHH	.	.	.	.	.
Chr3	18718612	18718870	AT3TE75940	.	-	ATTIRTA1	Tc1	DNA	258	short	95	medium	4851491	chromoarm	177	no-CHH	no-CHH	.	.	.	.	.
Chr3	18719886	18723643	AT3TE75945	.	+	ATREP15	Helitron	RC	3757	medium	1003	high	4852765	chromoarm	0	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	18720478	18720578	AT3TE75950	.	+	RathE1_cons	.	RathE1_cons	101	short	213	high	4853356	chromoarm	1836	.	.	.	.	.	.	.
Chr3	18723643	18723688	AT3TE75960	.	+	ATCOPIA29	Copia	LTR	45	tiny	19	low	4856522	chromoarm	508	no-CHH	no-CHH	.	.	.	.	.
Chr3	18723699	18723741	AT3TE75965	.	-	HELITRONY3	Helitron	RC	43	tiny	1399	high	4856577	chromoarm	563	.	.	.	.	.	.	.
Chr3	18723741	18724629	AT3TE75970	.	-	HELITRONY3	Helitron	RC	888	short	1399	high	4856620	chromoarm	606	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	18725171	18725254	AT3TE75975	.	+	ATREP9	Helitron	RC	83	tiny	201	high	4858050	chromoarm	2036	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	18725254	18727103	AT3TE75980	.	-	HELITRONY3	Helitron	RC	1849	short	1399	high	4858133	chromoarm	736	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	18726693	18726767	AT3TE75985	.	+	ATREP10A	Helitron	RC	74	tiny	279	high	4859572	chromoarm	1072	no-CHH	no-CHH	.	.	.	.	.
Chr3	18734248	18739393	AT3TE76010	.	+	META1	Copia	LTR	5145	long	138	medium	4867127	chromoarm	68	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	18739495	18739836	AT3TE76015	.	+	ATSINE4	.	SINE	341	short	98	medium	4872374	chromoarm	1968	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	18739836	18740797	AT3TE76020	.	+	ATREP4	Helitron	RC	961	short	832	high	4872715	chromoarm	1007	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	18745681	18747889	AT3TE76040	.	+	ATREP3	Helitron	RC	2208	medium	1439	high	4878560	chromoarm	83	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	18746238	18744882	-	transcript_id-"806f62e8-8338-4cb4-85cf-184d65d9b260|3"
Chr3	18747889	18747969	AT3TE76045	.	+	ATREP10D	Helitron	RC	80	tiny	1295	high	4880768	chromoarm	88	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	18765646	18766797	AT3TE76120	.	-	HELITRONY3	Helitron	RC	1151	short	1399	high	4898525	chromoarm	120	no-CHH	no-CHH	.	.	.	.	.
Chr3	18790061	18790152	AT3TE76220	.	-	RathE2_cons	.	RathE2_cons	91	tiny	74	medium	4922940	chromoarm	3314	no-CHH	no-CHH	.	.	.	.	.
Chr3	18791151	18796089	AT3TE76225	.	+	ATCOPIA52	Copia	LTR	4938	medium	7	low	4924030	chromoarm	4404	no-RdDM	no-RdDM	ExpressedAndAnnotated	18791325,18791358	18793170,18793226	+,+	transcript_id-"34ddff19-7ccb-4cbc-868e-e1203e1fefa0|12",transcript_id-"73745d0a-eed6-4d82-8661-432884785aa8|5"
Chr3	18811212	18812091	AT3TE76280	.	+	HELITRONY1D	Helitron	RC	879	short	756	high	4944091	chromoarm	2170	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	18812613	18812676	AT3TE76285	.	-	HELITRONY3	Helitron	RC	63	tiny	1399	high	4945492	chromoarm	1585	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	18812676	18813031	AT3TE76290	.	-	HELITRONY3	Helitron	RC	355	short	1399	high	4945555	chromoarm	1230	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	18818090	18818946	AT3TE76310	.	+	HELITRONY1B	Helitron	RC	856	short	414	high	4950969	chromoarm	922	no-CHH	no-CHH	.	.	.	.	.
Chr3	18822227	18823044	AT3TE76320	.	-	ATREP11	Helitron	RC	817	short	841	high	4955106	chromoarm	3431	no-CHH	no-CHH	.	.	.	.	.
Chr3	18830890	18831092	AT3TE76350	.	+	ATCOPIA13	Copia	LTR	202	short	35	low	4963769	chromoarm	70	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	18831755	18831941	AT3TE76355	.	+	ATCOPIA13	Copia	LTR	186	short	35	low	4964634	chromoarm	248	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	18833231	18833806	AT3TE76360	.	-	ATLINEIII	L1	LINE	575	short	196	medium	4966110	chromoarm	161	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	18843438	18843489	AT3TE76400	.	+	ATREP12	Helitron	RC	51	tiny	22	low	4976317	chromoarm	609	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	18843489	18844703	AT3TE76405	.	+	ATREP12	Helitron	RC	1214	short	22	low	4976368	chromoarm	495	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	18843637	18844605	+	transcript_id-"36263505-5b58-41f1-81e0-4832e9c9f3f7|4"
Chr3	18844871	18845075	AT3TE76410	.	+	RathE2_cons	.	RathE2_cons	204	short	74	medium	4977750	chromoarm	123	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	18850416	18851097	AT3TE76430	.	+	ATREP9	Helitron	RC	681	short	201	high	4983295	chromoarm	435	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	18857213	18857422	AT3TE76460	.	-	HELITRONY3	Helitron	RC	209	short	1399	high	4990092	chromoarm	402	no-CHH	no-CHH	.	.	.	.	.
Chr3	18857422	18857557	AT3TE76465	.	+	HELITRONY3	Helitron	RC	135	short	1399	high	4990301	chromoarm	611	no-CHH	no-CHH	.	.	.	.	.
Chr3	18857557	18858867	AT3TE76470	.	-	ATREP4	Helitron	RC	1310	short	832	high	4990436	chromoarm	746	no-CHH	no-CHH	.	.	.	.	.
Chr3	18860031	18860187	AT3TE76475	.	-	VANDAL13	MuDR	DNA	157	short	38	low	4992909	chromoarm	1959	.	.	.	.	.	.	.
Chr3	18860901	18861154	AT3TE76480	.	-	VANDAL13	MuDR	DNA	253	short	38	low	4993780	chromoarm	992	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	18864261	18864638	AT3TE76490	.	+	ATCOPIA18A	Copia	LTR	377	short	2	low	4997140	chromoarm	392	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr3	18864638	18865407	AT3TE76495	.	+	ATCOPIA18	Copia	LTR	769	short	2	low	4997517	chromoarm	769	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	18873610	18873890	AT3TE76530	.	-	RP1_AT	.	DNA	280	short	87	medium	5006489	chromoarm	96	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	18884314	18884459	AT3TE76570	.	+	ATCOPIA95	Copia	LTR	146	short	72	medium	5017192	chromoarm	1411	.	.	.	.	.	.	.
Chr3	18885461	18885613	AT3TE76575	.	-	ATREP2A	Helitron	RC	152	short	116	medium	5018340	chromoarm	2000	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	18885613	18887516	AT3TE76580	.	-	ATREP2	Helitron	RC	1903	short	164	medium	5018492	chromoarm	97	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	18885867	18887258	AT3TE76585	.	+	ATREP16	MuDR	DNA	1391	short	47	low	5018746	chromoarm	355	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	18895688	18895718	AT3TE76620	.	+	ATREP5	Helitron	RC	30	tiny	624	high	5028567	chromoarm	333	no-CHH	no-CHH	.	.	.	.	.
Chr3	18895718	18896368	AT3TE76625	.	-	ATREP1	Helitron	RC	650	short	498	high	5028597	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	18907458	18907815	AT3TE76670	.	+	ATREP5	Helitron	RC	357	short	624	high	5040337	chromoarm	3296	no-CHH	no-CHH	.	.	.	.	.
Chr3	18924139	18924276	AT3TE76740	.	-	VANDAL3	MuDR	DNA	137	short	177	medium	5057018	chromoarm	606	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	18925101	18925338	AT3TE76745	.	+	ATLINE1A	L1	LINE	238	short	289	high	5057979	chromoarm	319	.	.	.	.	.	.	.
Chr3	18925338	18925597	AT3TE76750	.	+	ATREP5	Helitron	RC	259	short	624	high	5058217	chromoarm	60	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	18925597	18925632	AT3TE76755	.	+	ATREP3	Helitron	RC	35	tiny	1439	high	5058476	chromoarm	25	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	18925883	18926605	AT3TE76760	.	-	ATREP11	Helitron	RC	722	short	841	high	5058762	chromoarm	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	18926159	18926392	AT3TE76765	.	-	ATTIRTA1	Tc1	DNA	233	short	95	medium	5059038	chromoarm	76	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	18927171	18927777	AT3TE76770	.	+	ATREP3	Helitron	RC	606	short	1439	high	5060050	chromoarm	1088	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	18932288	18932823	AT3TE76780	.	+	TNAT1A	.	DNA	535	short	162	medium	5065167	chromoarm	741	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	18948267	18949362	AT3TE76850	.	+	ATREP11A	Helitron	RC	1095	short	95	medium	5081146	chromoarm	219	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	18949362	18949646	AT3TE76855	.	+	ATREP11A	Helitron	RC	284	short	95	medium	5082241	chromoarm	0	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	18960799	18960878	AT3TE76900	.	-	ATDNAI27T9C	MuDR	DNA	79	tiny	108	medium	5093678	chromoarm	1914	no-CHH	no-CHH	.	.	.	.	.
Chr3	18982240	18982455	AT3TE76990	.	+	ATHATN3	HAT	DNA	215	short	70	medium	5115119	chromoarm	66	no-CHH	no-CHH	.	.	.	.	.
Chr3	18992284	18993163	AT3TE77030	.	+	ATREP10D	Helitron	RC	879	short	1295	high	5125163	chromoarm	398	no-CHH	no-CHH	.	.	.	.	.
Chr3	19009750	19009923	AT3TE77100	.	+	ATCOPIA96	Copia	LTR	173	short	16	low	5142629	chromoarm	932	no-CHH	no-CHH	.	.	.	.	.
Chr3	19020369	19020610	AT3TE77140	.	+	HELITRONY1D	Helitron	RC	241	short	756	high	5153248	chromoarm	275	no-CHH	no-CHH	.	.	.	.	.
Chr3	19020610	19021006	AT3TE77145	.	+	ATREP3	Helitron	RC	396	short	1439	high	5153489	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	19021368	19021516	AT3TE77150	.	-	ATHATN5	HAT	DNA	148	short	42	low	5154247	chromoarm	167	no-CHH	no-CHH	.	.	.	.	.
Chr3	19027318	19027671	AT3TE77170	.	+	ATLINEIII	L1	LINE	354	short	196	medium	5160196	chromoarm	555	.	.	.	.	.	.	.
Chr3	19075515	19075690	AT3TE77370	.	-	LIMPET1	MuDR	DNA	175	short	116	medium	5208394	chromoarm	27	no-CHH	no-CHH	ExpressedAndAnnotated	19075518	19078120	+	transcript_id-"42d7f9e2-b2ba-40c4-ba3f-166da3b21546|3"
Chr3	19085491	19085514	AT3TE77410	.	+	TSCL	.	LINE?	23	tiny	81	medium	5218370	chromoarm	40	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	19085514	19086280	AT3TE77415	.	+	TSCL	.	LINE?	766	short	81	medium	5218393	chromoarm	63	PolIV-RdDM	no-CHH	ExpressedAndAnnotated	19085830	19085131	-	transcript_id-"f1ee3ba8-0f2c-4d21-9795-8c1863d8f4ea|5"
Chr3	19088118	19088921	AT3TE77420	.	-	ATHATN10	HAT	DNA	803	short	48	low	5220997	chromoarm	192	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	19133500	19134414	AT3TE77610	.	+	AT9NMU1	MuDR	DNA	914	short	45	low	5266379	chromoarm	484	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	19134415	19134447	AT3TE77615	.	-	AT9NMU1	MuDR	DNA	33	tiny	45	low	5267293	chromoarm	1380	.	.	.	.	.	.	.
Chr3	19142209	19142386	AT3TE77640	.	+	BRODYAGA2	MuDR	DNA	177	short	525	high	5275088	chromoarm	223	no-CHH	no-CHH	.	.	.	.	.
Chr3	19142386	19143433	AT3TE77645	.	-	ARNOLDY1	MuDR	DNA	1047	short	237	high	5275265	chromoarm	400	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	19166814	19167165	AT3TE77740	.	-	BRODYAGA1A	MuDR	DNA	351	short	586	high	5299693	chromoarm	1738	no-CHH	no-CHH	.	.	.	.	.
Chr3	19176407	19176674	AT3TE77780	.	-	HELITRON2	Helitron	RC	267	short	194	medium	5309286	chromoarm	56	no-CHH	no-CHH	.	.	.	.	.
Chr3	19176692	19177639	AT3TE77785	.	-	HELITRON2	Helitron	RC	947	short	194	medium	5309571	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	19177654	19177703	AT3TE77790	.	-	HELITRON2	Helitron	RC	49	tiny	194	medium	5310533	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	19178377	19178414	AT3TE77795	.	+	AT9NMU1	MuDR	DNA	37	tiny	45	low	5311256	chromoarm	270	PolIV-and-RDR6-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	19178414	19178984	AT3TE77800	.	-	AT9MU1	MuDR	DNA	570	short	10	low	5311293	chromoarm	307	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	19178984	19179184	AT3TE77805	.	-	AT9NMU1	MuDR	DNA	200	short	45	low	5311863	chromoarm	258	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	19179260	19180408	AT3TE77810	.	-	HELITRON2	Helitron	RC	1148	short	194	medium	5312139	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	19195630	19195652	AT3TE77880	.	+	ATHPOGON1	Pogo	DNA	22	tiny	174	medium	5328509	chromoarm	1053	no-CHH	DCL3-RdDM	.	.	.	.	.
Chr3	19195652	19196027	AT3TE77885	.	+	BRODYAGA1A	MuDR	DNA	375	short	586	high	5328531	chromoarm	678	no-CHH	no-CHH	.	.	.	.	.
Chr3	19219259	19219281	AT3TE77980	.	+	HELITRONY1D	Helitron	RC	22	tiny	756	high	5352138	chromoarm	325	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	19219284	19219812	AT3TE77985	.	+	HELITRONY1B	Helitron	RC	529	short	414	high	5352162	chromoarm	349	.	.	.	.	.	.	.
Chr3	19231658	19232368	AT3TE78030	.	-	ATREP15	Helitron	RC	710	short	1003	high	5364537	chromoarm	298	no-CHH	no-CHH	.	.	.	.	.
Chr3	19257125	19257260	AT3TE78140	.	-	ATHPOGO	Pogo	DNA	135	short	25	low	5390004	chromoarm	1448	no-CHH	no-CHH	.	.	.	.	.
Chr3	19262568	19263184	AT3TE78160	.	-	ATREP4	Helitron	RC	616	short	832	high	5395447	chromoarm	2109	no-CHH	no-CHH	.	.	.	.	.
Chr3	19289783	19289862	AT3TE78270	.	+	ATLINE1_3A	L1	LINE	79	tiny	160	medium	5422662	chromoarm	706	no-CHH	no-CHH	.	.	.	.	.
Chr3	19291507	19291623	AT3TE78275	.	-	VANDAL13	MuDR	DNA	116	short	38	low	5424386	chromoarm	1447	no-CHH	no-CHH	.	.	.	.	.
Chr3	19301313	19301570	AT3TE78310	.	+	ATLINE1A	L1	LINE	257	short	289	high	5434192	chromoarm	237	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	19311752	19312081	AT3TE78350	.	-	ATENSPM1A	En-Spm	DNA	329	short	77	medium	5444631	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	19358135	19358816	AT3TE78550	.	-	ATREP3	Helitron	RC	681	short	1439	high	5491014	chromoarm	1225	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	19358816	19358856	AT3TE78555	.	+	HELITRONY3	Helitron	RC	40	tiny	1399	high	5491695	chromoarm	1460	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	19358856	19358884	AT3TE78560	.	+	ATREP7	Helitron	RC	28	tiny	164	medium	5491735	chromoarm	1432	no-CHH	no-CHH	.	.	.	.	.
Chr3	19376137	19376370	AT3TE78630	.	+	ATENSPM5	En-Spm	DNA	233	short	111	medium	5509016	chromoarm	258	no-CHH	no-CHH	.	.	.	.	.
Chr3	19411414	19411984	AT3TE78780	.	+	HELITRONY3	Helitron	RC	570	short	1399	high	5544293	chromoarm	358	no-CHH	no-CHH	.	.	.	.	.
Chr3	19425303	19425561	AT3TE78840	.	-	BRODYAGA1A	MuDR	DNA	258	short	586	high	5558182	chromoarm	120	no-CHH	no-CHH	.	.	.	.	.
Chr3	19427938	19429443	AT3TE78850	.	-	HELITRONY3	Helitron	RC	1505	short	1399	high	5560817	chromoarm	331	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	19429443	19429618	AT3TE78855	.	-	BRODYAGA1A	MuDR	DNA	175	short	586	high	5562322	chromoarm	156	no-CHH	no-CHH	.	.	.	.	.
Chr3	19436845	19436873	AT3TE78880	.	+	ATREP14	Helitron	RC	28	tiny	47	low	5569724	chromoarm	655	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	19436873	19437446	AT3TE78885	.	+	ATREP2	Helitron	RC	573	short	164	medium	5569752	chromoarm	683	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	19437446	19437546	AT3TE78890	.	+	ATREP2A	Helitron	RC	100	short	116	medium	5570325	chromoarm	1256	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	19464031	19464428	AT3TE79000	.	-	ATREP5	Helitron	RC	397	short	624	high	5596910	chromoarm	1215	no-CHH	no-CHH	.	.	.	.	.
Chr3	19464441	19465095	AT3TE79005	.	+	ATHPOGON3	Pogo	DNA	654	short	118	medium	5597320	chromoarm	548	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	19465095	19465568	AT3TE79010	.	-	ATREP11	Helitron	RC	473	short	841	high	5597974	chromoarm	75	no-CHH	no-CHH	.	.	.	.	.
Chr3	19465568	19465622	AT3TE79015	.	+	ATREP5	Helitron	RC	54	tiny	624	high	5598447	chromoarm	21	no-CHH	no-CHH	.	.	.	.	.
Chr3	19470576	19470737	AT3TE79030	.	+	ATCOPIA31	Copia	LTR	161	short	8	low	5603455	chromoarm	198	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	19478203	19478683	AT3TE79060	.	-	ATCOPIA3	Copia	LTR	480	short	8	low	5611082	chromoarm	2565	no-CHH	no-CHH	.	.	.	.	.
Chr3	19482030	19482267	AT3TE79070	.	+	ATCOPIA28	Copia	LTR	237	short	81	medium	5614909	chromoarm	2599	no-CHH	no-CHH	.	.	.	.	.
Chr3	19482743	19482938	AT3TE79075	.	-	ATHATN7	HAT	DNA	195	short	71	medium	5615622	chromoarm	1928	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	19483184	19484428	AT3TE79080	.	+	ATREP3	Helitron	RC	1244	short	1439	high	5616063	chromoarm	438	no-CHH	no-CHH	.	.	.	.	.
Chr3	19496127	19496892	AT3TE79130	.	-	HELITRONY3	Helitron	RC	765	short	1399	high	5629006	chromoarm	173	no-CHH	no-CHH	.	.	.	.	.
Chr3	19497687	19497847	AT3TE79135	.	+	ATREP19	.	DNA	160	short	189	medium	5630566	chromoarm	200	no-CHH	no-CHH	.	.	.	.	.
Chr3	19497847	19498694	AT3TE79140	.	+	ATREP4	Helitron	RC	847	short	832	high	5630726	chromoarm	360	no-CHH	no-CHH	.	.	.	.	.
Chr3	19498694	19499232	AT3TE79145	.	-	ATREP15	Helitron	RC	538	short	1003	high	5631573	chromoarm	1207	no-CHH	no-CHH	.	.	.	.	.
Chr3	19520550	19520589	AT3TE79230	.	-	VANDAL8	MuDR	DNA	39	tiny	123	medium	5653429	chromoarm	260	no-CHH	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	19520589	19520642	AT3TE79235	.	+	ATREP2A	Helitron	RC	53	tiny	116	medium	5653468	chromoarm	299	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	19520642	19521598	AT3TE79240	.	+	ATREP2A	Helitron	RC	956	short	116	medium	5653521	chromoarm	352	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	19521598	19521666	AT3TE79245	.	+	ATREP3	Helitron	RC	68	tiny	1439	high	5654477	chromoarm	931	no-CHH	no-CHH	.	.	.	.	.
Chr3	19528897	19529879	AT3TE79270	.	+	ATREP1	Helitron	RC	982	short	498	high	5661776	chromoarm	59	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	19529879	19530038	AT3TE79275	.	+	HELITRONY3	Helitron	RC	159	short	1399	high	5662758	chromoarm	697	no-CHH	no-CHH	.	.	.	.	.
Chr3	19533126	19533229	AT3TE79285	.	-	BRODYAGA2	MuDR	DNA	104	short	525	high	5666004	chromoarm	0	.	.	.	.	.	.	.
Chr3	19533229	19533871	AT3TE79290	.	+	HELITRONY1D	Helitron	RC	642	short	756	high	5666108	chromoarm	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	19533871	19533924	AT3TE79295	.	+	ATREP10D	Helitron	RC	53	tiny	1295	high	5666750	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	19533924	19534234	AT3TE79300	.	-	ATCOPIA49	Copia	LTR	310	short	34	low	5666803	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	19534234	19534264	AT3TE79305	.	-	ATCOPIA68	Copia	LTR	30	tiny	43	low	5667113	chromoarm	0	PolIV-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	19536270	19536331	AT3TE79310	.	+	ATREP4	Helitron	RC	61	tiny	832	high	5669149	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	19536331	19536456	AT3TE79315	.	-	ARNOLDY2	MuDR	DNA	125	short	288	high	5669210	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	19536456	19537958	AT3TE79320	.	-	HELITRONY1E	Helitron	RC	1502	short	447	high	5669335	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	19537958	19538347	AT3TE79325	.	+	HELITRONY3	Helitron	RC	389	short	1399	high	5670837	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	19538347	19538424	AT3TE79330	.	-	ATREP3	Helitron	RC	77	tiny	1439	high	5671226	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	19544457	19544960	AT3TE79360	.	+	ATCOPIA30	Copia	LTR	503	short	33	low	5677336	chromoarm	290	no-CHH	no-RdDM	.	.	.	.	.
Chr3	19544960	19545246	AT3TE79365	.	-	ATCOPIA28	Copia	LTR	286	short	81	medium	5677839	chromoarm	793	no-CHH	no-CHH	.	.	.	.	.
Chr3	19545247	19545413	AT3TE79370	.	-	ATCOPIA29	Copia	LTR	166	short	19	low	5678126	chromoarm	1032	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	19569386	19569566	AT3TE79470	.	+	ATENSPM5	En-Spm	DNA	180	short	111	medium	5702265	chromoarm	239	no-CHH	no-CHH	.	.	.	.	.
Chr3	19605522	19605631	AT3TE79620	.	-	ATREP2	Helitron	RC	109	short	164	medium	5738401	chromoarm	1156	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	19621755	19621941	AT3TE79690	.	-	ATREP8	Helitron	RC	186	short	75	medium	5754634	chromoarm	2659	no-RdDM	no-CHH	.	.	.	.	.
Chr3	19621941	19624005	AT3TE79695	.	+	ATREP11	Helitron	RC	2064	medium	841	high	5754820	chromoarm	595	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	19637268	19637614	AT3TE79750	.	+	ATTIRX1B	.	DNA	346	short	44	low	5770147	chromoarm	732	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	19647788	19647831	AT3TE79790	.	-	HELITRONY1A	Helitron	RC	43	tiny	271	high	5780667	chromoarm	826	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	19647831	19648851	AT3TE79795	.	-	ATREP4	Helitron	RC	1020	short	832	high	5780710	chromoarm	194	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	19656099	19656672	AT3TE79820	.	+	HELITRONY3	Helitron	RC	573	short	1399	high	5788978	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	19666810	19667178	AT3TE79860	.	-	ATLINE2	L1	LINE	368	short	138	medium	5799689	chromoarm	405	no-CHH	no-CHH	.	.	.	.	.
Chr3	19667178	19667538	AT3TE79865	.	+	ATMU2	MuDR	DNA	360	short	64	medium	5800057	chromoarm	773	no-CHH	no-CHH	.	.	.	.	.
Chr3	19701001	19701072	AT3TE80000	.	-	RathE1_cons	.	RathE1_cons	71	tiny	213	high	5833880	chromoarm	1412	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	19732815	19732885	AT3TE80140	.	+	HELITRONY1A	Helitron	RC	70	tiny	271	high	5865694	chromoarm	952	no-CHH	no-CHH	.	.	.	.	.
Chr3	19732885	19733691	AT3TE80145	.	+	BRODYAGA2	MuDR	DNA	806	short	525	high	5865764	chromoarm	146	no-CHH	no-CHH	.	.	.	.	.
Chr3	19739525	19739695	AT3TE80160	.	+	ATREP1	Helitron	RC	170	short	498	high	5872404	chromoarm	478	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr3	19739695	19740397	AT3TE80165	.	+	ATREP2	Helitron	RC	702	short	164	medium	5872574	chromoarm	648	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	19740397	19740561	AT3TE80170	.	+	ATREP11	Helitron	RC	164	short	841	high	5873276	chromoarm	1350	no-CHH	no-RdDM	.	.	.	.	.
Chr3	19753369	19753482	AT3TE80220	.	-	TSCL	.	LINE?	113	short	81	medium	5886248	chromoarm	1201	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	19753762	19753966	AT3TE80225	.	+	TSCL	.	LINE?	204	short	81	medium	5886641	chromoarm	1594	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	19754076	19755173	AT3TE80230	.	-	ATREP10D	Helitron	RC	1097	short	1295	high	5886955	chromoarm	575	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	19757796	19758124	AT3TE80240	.	-	BRODYAGA1	MuDR	DNA	328	short	251	high	5890675	chromoarm	32	no-CHH	no-CHH	.	.	.	.	.
Chr3	19765218	19766341	AT3TE80270	.	+	SIMPLEGUY1	Harbinger	DNA	1123	short	116	medium	5898097	chromoarm	0	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	19767490	19767601	AT3TE80275	.	-	ATMU10	MuDR	DNA	111	short	87	medium	5900369	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	19776320	19776926	AT3TE80310	.	-	ATREP3	Helitron	RC	606	short	1439	high	5909199	chromoarm	208	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	19778051	19779709	AT3TE80315	.	-	ATREP7	Helitron	RC	1658	short	164	medium	5910930	chromoarm	480	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	19832020	19832453	AT3TE80530	.	-	ATREP3	Helitron	RC	433	short	1439	high	5964899	chromoarm	212	no-CHH	no-CHH	.	.	.	.	.
Chr3	19851147	19851223	AT3TE80610	.	+	ATREP10B	Helitron	RC	76	tiny	491	high	5984026	chromoarm	477	no-CHH	no-CHH	.	.	.	.	.
Chr3	19851223	19851993	AT3TE80615	.	+	ATREP15	Helitron	RC	770	short	1003	high	5984102	chromoarm	553	no-CHH	no-CHH	.	.	.	.	.
Chr3	19853595	19854122	AT3TE80620	.	+	ATREP15	Helitron	RC	527	short	1003	high	5986474	chromoarm	2747	no-CHH	no-CHH	.	.	.	.	.
Chr3	19886098	19886669	AT3TE80760	.	+	ATREP10D	Helitron	RC	571	short	1295	high	6018977	chromoarm	337	no-CHH	no-CHH	.	.	.	.	.
Chr3	19924372	19924427	AT3TE80920	.	+	ATLINEIII	L1	LINE	55	tiny	196	medium	6057251	chromoarm	301	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	19959133	19959641	AT3TE81070	.	+	ATHPOGON1	Pogo	DNA	508	short	174	medium	6092012	chromoarm	127	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	19959641	19959664	AT3TE81075	.	+	ATHPOGON1	Pogo	DNA	23	tiny	174	medium	6092520	chromoarm	191	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	19959664	19959689	AT3TE81080	.	-	ATREP3	Helitron	RC	25	tiny	1439	high	6092543	chromoarm	166	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	19960283	19960391	AT3TE81085	.	+	ATDNA12T3A	.	DNA	108	short	22	low	6093162	chromoarm	0	PolIV-and-RDR6-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	20015429	20015482	AT3TE81320	.	+	BRODYAGA2	MuDR	DNA	53	tiny	525	high	6148308	chromoarm	130	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	20015482	20016068	AT3TE81325	.	-	ATREP6	Helitron	RC	586	short	181	medium	6148361	chromoarm	183	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	20016068	20016102	AT3TE81330	.	+	BRODYAGA2	MuDR	DNA	34	tiny	525	high	6148947	chromoarm	769	no-CHH	no-CHH	.	.	.	.	.
Chr3	20024131	20024261	AT3TE81360	.	+	ATMU11	MuDR	DNA	130	short	20	low	6157010	chromoarm	528	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	20024411	20024578	AT3TE81365	.	+	BRODYAGA1	MuDR	DNA	167	short	251	high	6157290	chromoarm	808	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	20033240	20033388	AT3TE81400	.	+	ATIS112A	Harbinger	DNA	148	short	173	medium	6166119	chromoarm	1062	no-CHH	no-CHH	.	.	.	.	.
Chr3	20055662	20055729	AT3TE81500	.	-	ATREP15	Helitron	RC	67	tiny	1003	high	6188541	chromoarm	635	no-CHH	no-CHH	.	.	.	.	.
Chr3	20055729	20056632	AT3TE81505	.	+	ARNOLDY2	MuDR	DNA	903	short	288	high	6188608	chromoarm	215	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	20056632	20056716	AT3TE81510	.	+	ATREP3	Helitron	RC	84	tiny	1439	high	6189511	chromoarm	131	no-CHH	no-CHH	.	.	.	.	.
Chr3	20113198	20114550	AT3TE81750	.	+	ATREP11	Helitron	RC	1352	short	841	high	6246077	chromoarm	254	no-CHH	no-CHH	.	.	.	.	.
Chr3	20127695	20127858	AT3TE81810	.	-	ARNOLDY1	MuDR	DNA	163	short	237	high	6260574	chromoarm	711	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	20137991	20138274	AT3TE81850	.	+	VANDAL17	MuDR	DNA	283	short	178	medium	6270870	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	20144070	20144282	AT3TE81870	.	+	RP1_AT	.	DNA	212	short	87	medium	6276949	chromoarm	635	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	20167567	20167707	AT3TE81970	.	-	SIMPLEHAT1	HAT	DNA	140	short	56	medium	6300446	chromoarm	381	no-CHH	no-CHH	.	.	.	.	.
Chr3	20188455	20189429	AT3TE82060	.	+	SIMPLEHAT1	HAT	DNA	974	short	56	medium	6321334	chromoarm	946	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	20199580	20199727	AT3TE82100	.	-	ATREP4	Helitron	RC	147	short	832	high	6332459	chromoarm	378	no-CHH	no-CHH	.	.	.	.	.
Chr3	20199727	20200203	AT3TE82105	.	+	ATREP19	.	DNA	476	short	189	medium	6332606	chromoarm	525	no-CHH	no-CHH	.	.	.	.	.
Chr3	20209290	20209743	AT3TE82140	.	-	ATLINE1_5	L1	LINE	453	short	91	medium	6342169	chromoarm	818	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	20229249	20229270	AT3TE82220	.	+	ATREP10A	Helitron	RC	21	tiny	279	high	6362128	chromoarm	367	no-CHH	no-CHH	.	.	.	.	.
Chr3	20229270	20229733	AT3TE82225	.	+	HELITRON2	Helitron	RC	463	short	194	medium	6362149	chromoarm	388	no-CHH	no-CHH	.	.	.	.	.
Chr3	20233466	20233538	AT3TE82235	.	+	BOMZH2	MuDR	DNA	72	tiny	47	low	6366345	chromoarm	366	no-CHH	no-RdDM	.	.	.	.	.
Chr3	20233538	20234626	AT3TE82240	.	-	BOMZH1	MuDR	DNA	1088	short	28	low	6366417	chromoarm	438	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	20234626	20234665	AT3TE82245	.	+	ARNOLD1	MuDR	DNA	39	tiny	39	low	6367505	chromoarm	1152	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	20235108	20235246	AT3TE82250	.	-	ATSINE2A	.	SINE	138	short	33	low	6367987	chromoarm	571	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	20277020	20277231	AT3TE82430	.	+	DT1	Mariner	DNA	211	short	123	medium	6409899	chromoarm	1193	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	20304711	20304914	AT3TE82550	.	+	ATSINE4	.	SINE	203	short	98	medium	6437590	chromoarm	973	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	20304980	20309967	AT3TE82555	.	-	ATGP3	Gypsy	LTR	4987	medium	60	medium	6437859	chromoarm	386	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	20315224	20315251	AT3TE82570	.	+	ATREP11	Helitron	RC	27	tiny	841	high	6448103	chromoarm	194	no-CHH	no-CHH	.	.	.	.	.
Chr3	20315251	20316190	AT3TE82575	.	+	ATREP11	Helitron	RC	939	short	841	high	6448130	chromoarm	221	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	20338421	20339385	AT3TE82670	.	+	ATREP10D	Helitron	RC	964	short	1295	high	6471300	chromoarm	320	no-CHH	no-CHH	.	.	.	.	.
Chr3	20349858	20350363	AT3TE82710	.	-	BRODYAGA1	MuDR	DNA	505	short	251	high	6482737	chromoarm	0	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	20353389	20353918	AT3TE82720	.	+	ATIS112A	Harbinger	DNA	529	short	173	medium	6486268	chromoarm	483	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	20353918	20353973	AT3TE82725	.	+	HELITRON4	Helitron	RC	55	tiny	199	medium	6486797	chromoarm	428	no-CHH	no-CHH	.	.	.	.	.
Chr3	20353973	20354009	AT3TE82730	.	+	BRODYAGA2	MuDR	DNA	36	tiny	525	high	6486852	chromoarm	392	no-CHH	no-CHH	.	.	.	.	.
Chr3	20355051	20355132	AT3TE82735	.	+	ATLINE1A	L1	LINE	82	tiny	289	high	6487929	chromoarm	0	.	.	.	.	.	.	.
Chr3	20394910	20394971	AT3TE82900	.	+	ATDNAI27T9A	MuDR	DNA	61	tiny	116	medium	6527789	chromoarm	197	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	20407460	20408071	AT3TE82950	.	-	HELITRONY1D	Helitron	RC	611	short	756	high	6540339	chromoarm	305	no-CHH	no-CHH	.	.	.	.	.
Chr3	20422381	20422738	AT3TE83010	.	+	ATCOPIA45	Copia	LTR	357	short	20	low	6555260	chromoarm	41	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	20424245	20424328	AT3TE83015	.	+	ATCOPIA84	Copia	LTR	83	tiny	10	low	6557124	chromoarm	437	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	20475605	20475811	AT3TE83230	.	+	ATLINE1_3A	L1	LINE	206	short	160	medium	6608484	chromoarm	900	no-CHH	no-CHH	.	.	.	.	.
Chr3	20482775	20483332	AT3TE83260	.	-	HELITRONY1D	Helitron	RC	557	short	756	high	6615654	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	20483332	20483359	AT3TE83265	.	-	HELITRON4	Helitron	RC	27	tiny	199	medium	6616211	chromoarm	542	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	20483414	20484039	AT3TE83270	.	+	ATHATN7	HAT	DNA	625	short	71	medium	6616293	chromoarm	624	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	20484040	20484289	AT3TE83275	.	-	ATREP3	Helitron	RC	250	short	1439	high	6616918	chromoarm	1249	.	.	.	.	.	.	.
Chr3	20484289	20487161	AT3TE83280	.	-	ATREP3	Helitron	RC	2872	medium	1439	high	6617168	chromoarm	1499	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	20485973	20486594	AT3TE83285	.	+	ATHATN7	HAT	DNA	621	short	71	medium	6618852	chromoarm	2722	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	20486696	20486727	AT3TE83290	.	-	ATREP3	Helitron	RC	31	tiny	1439	high	6619575	chromoarm	2589	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	20494969	20495822	AT3TE83330	.	+	HELITRONY3	Helitron	RC	853	short	1399	high	6627848	chromoarm	952	no-CHH	no-CHH	.	.	.	.	.
Chr3	20502025	20502316	AT3TE83360	.	-	DT1	Mariner	DNA	291	short	123	medium	6634904	chromoarm	336	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	20504023	20505461	AT3TE83365	.	-	ATCOPIA37	Copia	LTR	1438	short	32	low	6636902	chromoarm	293	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	20504783	20504816	AT3TE83370	.	-	ATCOPIA50	Copia	LTR	33	tiny	17	low	6637662	chromoarm	1053	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	20505461	20505520	AT3TE83375	.	-	ATCOPIA37	Copia	LTR	59	tiny	32	low	6638340	chromoarm	352	no-CHH	no-CHH	.	.	.	.	.
Chr3	20515801	20516113	AT3TE83410	.	-	ATENSPM5	En-Spm	DNA	312	short	111	medium	6648680	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	20540379	20540410	AT3TE83510	.	+	ATHPOGON1	Pogo	DNA	31	tiny	174	medium	6673258	chromoarm	1380	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr3	20540410	20540888	AT3TE83515	.	-	ATREP10A	Helitron	RC	478	short	279	high	6673289	chromoarm	1008	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	20564238	20564388	AT3TE83610	.	+	ATENSPM5	En-Spm	DNA	150	short	111	medium	6697117	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	20577777	20577902	AT3TE83670	.	+	ATHATN3	HAT	DNA	125	short	70	medium	6710656	chromoarm	1329	no-CHH	no-RdDM	.	.	.	.	.
Chr3	20584510	20584680	AT3TE83700	.	-	ATSINE2A	.	SINE	170	short	33	low	6717389	chromoarm	2386	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	20629316	20629826	AT3TE83890	.	+	ATDNA2T9C	MuDR	DNA	510	short	242	high	6762195	chromoarm	327	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	20634241	20634367	AT3TE83900	.	+	ATDNAI27T9A	MuDR	DNA	126	short	116	medium	6767120	chromoarm	213	no-CHH	no-CHH	.	.	.	.	.
Chr3	20653176	20653610	AT3TE83980	.	+	BRODYAGA1A	MuDR	DNA	434	short	586	high	6786055	chromoarm	101	no-CHH	no-CHH	.	.	.	.	.
Chr3	20654219	20654456	AT3TE83985	.	-	HELITRONY3	Helitron	RC	237	short	1399	high	6787098	chromoarm	1	no-RdDM	no-CHH	.	.	.	.	.
Chr3	20654456	20654524	AT3TE83990	.	-	ARNOLDY1	MuDR	DNA	68	tiny	237	high	6787335	chromoarm	238	RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	20654524	20654616	AT3TE83995	.	+	HELITRONY3	Helitron	RC	92	tiny	1399	high	6787403	chromoarm	306	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	20654616	20658024	AT3TE84000	.	+	ARNOLDY2	MuDR	DNA	3408	medium	288	high	6787495	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	20658024	20658057	AT3TE84005	.	+	HELITRONY3	Helitron	RC	33	tiny	1399	high	6790903	chromoarm	0	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	20671692	20671782	AT3TE84060	.	-	HELITRONY1D	Helitron	RC	90	tiny	756	high	6804571	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	20671782	20672271	AT3TE84065	.	+	ATMUN1	MuDR	DNA	489	short	107	medium	6804661	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	20675855	20676181	AT3TE84075	.	-	BRODYAGA1A	MuDR	DNA	326	short	586	high	6808734	chromoarm	44	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	20676385	20676476	AT3TE84080	.	+	RathE2_cons	.	RathE2_cons	91	tiny	74	medium	6809264	chromoarm	574	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	20681808	20681863	AT3TE84100	.	+	ATLINE1_4	L1	LINE	55	tiny	102	medium	6814687	chromoarm	250	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	20685600	20685801	AT3TE84110	.	+	ATMU2	MuDR	DNA	201	short	64	medium	6818479	chromoarm	1637	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	20686590	20686825	AT3TE84115	.	+	ATMU2	MuDR	DNA	235	short	64	medium	6819469	chromoarm	2627	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	20688508	20688689	AT3TE84120	.	-	ATCOPIA34	Copia	LTR	181	short	16	low	6821387	chromoarm	4545	no-CHH	no-CHH	.	.	.	.	.
Chr3	20726147	20727046	AT3TE84280	.	-	VANDAL22	MuDR	DNA	899	short	48	low	6859026	chromoarm	539	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	20727046	20727116	AT3TE84285	.	-	VANDAL22	MuDR	DNA	70	tiny	48	low	6859925	chromoarm	719	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	20727116	20727464	AT3TE84290	.	-	VANDAL22	MuDR	DNA	348	short	48	low	6859995	chromoarm	371	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	20729944	20730090	AT3TE84300	.	+	ENDOVIR1	Copia	LTR	146	short	15	low	6862823	chromoarm	982	no-CHH	no-CHH	.	.	.	.	.
Chr3	20752093	20752316	AT3TE84390	.	-	ATCOPIA17	Copia	LTR	223	short	16	low	6884972	chromoarm	1586	no-CHH	no-CHH	.	.	.	.	.
Chr3	20752492	20752706	AT3TE84395	.	+	ATMU2	MuDR	DNA	214	short	64	medium	6885371	chromoarm	1196	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	20753460	20753548	AT3TE84400	.	+	ATMUN1	MuDR	DNA	88	tiny	107	medium	6886339	chromoarm	354	no-RdDM	no-CHH	.	.	.	.	.
Chr3	20756507	20757669	AT3TE84410	.	+	ATREP3	Helitron	RC	1162	short	1439	high	6889386	chromoarm	160	no-CHH	no-CHH	.	.	.	.	.
Chr3	20757669	20757689	AT3TE84415	.	+	HELITRONY2	Helitron	RC	20	tiny	198	medium	6890548	chromoarm	1322	no-CHH	no-CHH	.	.	.	.	.
Chr3	20757689	20757749	AT3TE84420	.	-	ATREP10D	Helitron	RC	60	tiny	1295	high	6890568	chromoarm	1342	no-CHH	no-CHH	.	.	.	.	.
Chr3	20763019	20763161	AT3TE84440	.	+	ATDNAI27T9C	MuDR	DNA	142	short	108	medium	6895898	chromoarm	127	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	20769399	20769598	AT3TE84470	.	-	ATREP11	Helitron	RC	199	short	841	high	6902278	chromoarm	135	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	20769598	20770462	AT3TE84475	.	-	ATREP1	Helitron	RC	864	short	498	high	6902477	chromoarm	334	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	20770463	20770985	AT3TE84480	.	-	HELITRONY3	Helitron	RC	522	short	1399	high	6903342	chromoarm	1199	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	20773616	20773772	AT3TE84490	.	-	ATHATN9	HAT	DNA	156	short	12	low	6906495	chromoarm	3084	no-CHH	no-CHH	.	.	.	.	.
Chr3	20785917	20786367	AT3TE84540	.	+	ATREP10D	Helitron	RC	450	short	1295	high	6918796	chromoarm	233	no-CHH	no-CHH	.	.	.	.	.
Chr3	20786367	20786391	AT3TE84545	.	-	HELITRONY1D	Helitron	RC	24	tiny	756	high	6919246	chromoarm	683	no-CHH	no-CHH	.	.	.	.	.
Chr3	20786391	20788524	AT3TE84550	.	+	ATREP3	Helitron	RC	2133	medium	1439	high	6919270	chromoarm	233	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	20788524	20788585	AT3TE84555	.	+	ATREP5	Helitron	RC	61	tiny	624	high	6921403	chromoarm	172	no-CHH	no-CHH	.	.	.	.	.
Chr3	20804553	20805002	AT3TE84620	.	-	ATREP10B	Helitron	RC	449	short	491	high	6937432	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	20808306	20808411	AT3TE84630	.	-	ATHILA7	Gypsy	LTR	105	short	134	medium	6941185	chromoarm	789	no-CHH	no-CHH	.	.	.	.	.
Chr3	20813537	20813591	AT3TE84650	.	-	ATLINEIII	L1	LINE	54	tiny	196	medium	6946416	chromoarm	549	no-CHH	no-CHH	.	.	.	.	.
Chr3	20849022	20849225	AT3TE84800	.	-	ATCOPIA55	Copia	LTR	203	short	9	low	6981901	chromoarm	666	no-CHH	no-CHH	.	.	.	.	.
Chr3	20852194	20852310	AT3TE84810	.	-	ATIS112A	Harbinger	DNA	116	short	173	medium	6985073	chromoarm	415	no-CHH	no-CHH	.	.	.	.	.
Chr3	20874242	20874649	AT3TE84900	.	-	ATCOPIA6	Copia	LTR	407	short	8	low	7007121	chromoarm	2388	no-CHH	no-CHH	.	.	.	.	.
Chr3	20874724	20875076	AT3TE84905	.	+	ATREP10D	Helitron	RC	352	short	1295	high	7007603	chromoarm	2870	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	20875076	20875604	AT3TE84910	.	+	ATREP10B	Helitron	RC	528	short	491	high	7007955	chromoarm	3138	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	20875604	20876482	AT3TE84915	.	+	ATREP10	Helitron	RC	878	short	63	medium	7008483	chromoarm	2260	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	20930602	20930774	AT3TE85140	.	+	ATCOPIA7	Copia	LTR	172	short	5	low	7063481	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	20939542	20939660	AT3TE85180	.	-	ATCOPIA68	Copia	LTR	118	short	43	low	7072421	chromoarm	556	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	20947769	20948580	AT3TE85210	.	+	ATREP15	Helitron	RC	811	short	1003	high	7080648	chromoarm	38	no-CHH	no-CHH	.	.	.	.	.
Chr3	20948580	20948761	AT3TE85215	.	+	ATREP1	Helitron	RC	181	short	498	high	7081459	chromoarm	149	no-CHH	no-CHH	.	.	.	.	.
Chr3	20954755	20954969	AT3TE85240	.	-	ATREP1	Helitron	RC	214	short	498	high	7087634	chromoarm	114	no-CHH	no-CHH	.	.	.	.	.
Chr3	20954969	20955302	AT3TE85245	.	+	BRODYAGA1A	MuDR	DNA	333	short	586	high	7087848	chromoarm	101	no-CHH	no-CHH	.	.	.	.	.
Chr3	20955302	20955336	AT3TE85250	.	+	ATREP15	Helitron	RC	34	tiny	1003	high	7088181	chromoarm	67	no-CHH	no-CHH	.	.	.	.	.
Chr3	20957847	20957951	AT3TE85260	.	+	ATMUNX1	MuDR	DNA	104	short	155	medium	7090726	chromoarm	708	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	20999040	20999315	AT3TE85440	.	+	ATLINE1_3A	L1	LINE	275	short	160	medium	7131919	chromoarm	415	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	21008238	21008659	AT3TE85480	.	+	ATLINE1_5	L1	LINE	421	short	91	medium	7141117	chromoarm	730	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	21009424	21009790	AT3TE85485	.	-	ATREP19	.	DNA	366	short	189	medium	7142303	chromoarm	1563	no-CHH	no-CHH	.	.	.	.	.
Chr3	21026283	21026546	AT3TE85550	.	-	RP1_AT	.	DNA	264	short	87	medium	7159161	chromoarm	2526	.	.	.	.	.	.	.
Chr3	21097587	21098218	AT3TE85850	.	-	BRODYAGA2	MuDR	DNA	631	short	525	high	7230466	chromoarm	271	no-CHH	no-CHH	.	.	.	.	.
Chr3	21098218	21098378	AT3TE85855	.	-	HELITRONY2	Helitron	RC	160	short	198	medium	7231097	chromoarm	136	no-CHH	no-CHH	.	.	.	.	.
Chr3	21104507	21104801	AT3TE85880	.	+	HELITRONY2	Helitron	RC	294	short	198	medium	7237386	chromoarm	1303	no-CHH	no-CHH	.	.	.	.	.
Chr3	21123381	21123777	AT3TE85960	.	+	ATREP5	Helitron	RC	396	short	624	high	7256260	chromoarm	396	no-CHH	no-CHH	.	.	.	.	.
Chr3	21130157	21130711	AT3TE85990	.	+	BRODYAGA1A	MuDR	DNA	554	short	586	high	7263036	chromoarm	176	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	21130711	21130732	AT3TE85995	.	-	BRODYAGA1	MuDR	DNA	21	tiny	251	high	7263590	chromoarm	730	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	21135518	21136218	AT3TE86010	.	-	ATREP5	Helitron	RC	700	short	624	high	7268397	chromoarm	184	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	21158936	21159511	AT3TE86110	.	+	ATREP15	Helitron	RC	575	short	1003	high	7291815	chromoarm	108	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	21168664	21169226	AT3TE86150	.	-	HELITRONY3	Helitron	RC	562	short	1399	high	7301543	chromoarm	186	no-CHH	no-CHH	.	.	.	.	.
Chr3	21192548	21192940	AT3TE86250	.	+	ATREP9	Helitron	RC	392	short	201	high	7325427	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	21208984	21209122	AT3TE86320	.	+	ATREP10D	Helitron	RC	138	short	1295	high	7341863	chromoarm	473	no-CHH	no-CHH	.	.	.	.	.
Chr3	21238654	21238962	AT3TE86450	.	+	ATENSPM1A	En-Spm	DNA	308	short	77	medium	7371533	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	21258944	21259243	AT3TE86540	.	+	BRODYAGA1A	MuDR	DNA	299	short	586	high	7391823	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	21266072	21266822	AT3TE86570	.	-	ATREP3	Helitron	RC	750	short	1439	high	7398951	chromoarm	275	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	21304720	21305360	AT3TE86730	.	-	ATREP5	Helitron	RC	640	short	624	high	7437599	chromoarm	1796	no-CHH	no-CHH	.	.	.	.	.
Chr3	21305360	21306675	AT3TE86735	.	+	ATREP10D	Helitron	RC	1315	short	1295	high	7438239	chromoarm	593	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	21322656	21327537	AT3TE86800	.	+	TA11	L1	LINE	4881	medium	157	medium	7455535	chromoarm	630	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	21323769	21323812	AT3TE86805	.	+	TA11	L1	LINE	43	tiny	157	medium	7456648	chromoarm	1743	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	21327537	21327874	AT3TE86815	.	+	TA11	L1	LINE	337	short	157	medium	7460416	chromoarm	2307	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	21363603	21364016	AT3TE86960	.	+	TAG1	HAT	DNA	413	short	28	low	7496482	chromoarm	789	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	21364016	21364081	AT3TE86965	.	+	TAG3N1	HAT	DNA	65	tiny	97	medium	7496895	chromoarm	1202	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	21370902	21371154	AT3TE86990	.	+	ATENSPM5	En-Spm	DNA	252	short	111	medium	7503781	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	21377039	21377158	AT3TE87020	.	+	HELITRONY1D	Helitron	RC	119	short	756	high	7509918	chromoarm	3895	no-CHH	no-CHH	.	.	.	.	.
Chr3	21391654	21391934	AT3TE87080	.	+	ATCOPIA10	Copia	LTR	280	short	7	low	7524533	chromoarm	259	no-CHH	no-CHH	.	.	.	.	.
Chr3	21436688	21436989	AT3TE87270	.	-	BRODYAGA1A	MuDR	DNA	301	short	586	high	7569567	chromoarm	1281	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	21437305	21437723	AT3TE87275	.	+	ATHAT10	HAT	DNA	418	short	35	low	7570184	chromoarm	547	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	21472158	21472859	AT3TE87420	.	+	ATREP10B	Helitron	RC	701	short	491	high	7605037	chromoarm	811	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	21481224	21481627	AT3TE87460	.	-	ATREP1	Helitron	RC	403	short	498	high	7614103	chromoarm	243	no-CHH	no-CHH	.	.	.	.	.
Chr3	21482124	21482648	AT3TE87465	.	+	ATREP1	Helitron	RC	524	short	498	high	7615003	chromoarm	1143	no-CHH	no-CHH	.	.	.	.	.
Chr3	21492074	21492196	AT3TE87500	.	-	ATDNAI27T9C	MuDR	DNA	122	short	108	medium	7624953	chromoarm	342	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	21497128	21497614	AT3TE87520	.	+	HELITRON2	Helitron	RC	486	short	194	medium	7630007	chromoarm	110	no-CHH	no-CHH	.	.	.	.	.
Chr3	21524500	21525289	AT3TE87630	.	-	ATREP5	Helitron	RC	789	short	624	high	7657379	chromoarm	1422	no-CHH	no-CHH	.	.	.	.	.
Chr3	21551457	21551704	AT3TE87740	.	-	HELITRONY1E	Helitron	RC	247	short	447	high	7684336	chromoarm	1969	no-CHH	no-CHH	.	.	.	.	.
Chr3	21551704	21552058	AT3TE87745	.	-	HELITRONY1A	Helitron	RC	354	short	271	high	7684583	chromoarm	2216	no-CHH	no-CHH	.	.	.	.	.
Chr3	21552058	21552656	AT3TE87750	.	-	ATREP2	Helitron	RC	598	short	164	medium	7684937	chromoarm	2570	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	21552656	21552787	AT3TE87755	.	-	ATREP2A	Helitron	RC	131	short	116	medium	7685535	chromoarm	3168	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	21553003	21553879	AT3TE87760	.	+	ATREP11	Helitron	RC	876	short	841	high	7685882	chromoarm	3515	no-CHH	no-CHH	.	.	.	.	.
Chr3	21601493	21601662	AT3TE87960	.	+	ATCOPIA13	Copia	LTR	169	short	35	low	7734372	chromoarm	276	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	21608568	21609013	AT3TE87990	.	-	ATREP3	Helitron	RC	445	short	1439	high	7741447	chromoarm	293	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	21609600	21610300	AT3TE87995	.	-	HELITRONY1B	Helitron	RC	700	short	414	high	7742479	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	21616625	21616768	AT3TE88020	.	+	ATHATN3A	HAT	DNA	143	short	20	low	7749504	chromoarm	451	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	21616768	21616806	AT3TE88025	.	-	ATHPOGON1	Pogo	DNA	38	tiny	174	medium	7749647	chromoarm	594	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	21616806	21617554	AT3TE88030	.	-	ATHPOGON1	Pogo	DNA	748	short	174	medium	7749685	chromoarm	632	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	21617554	21617601	AT3TE88035	.	+	ATHATN3A	HAT	DNA	47	tiny	20	low	7750433	chromoarm	844	no-CHH	no-CHH	.	.	.	.	.
Chr3	21639134	21640028	AT3TE88120	.	-	ATREP10D	Helitron	RC	894	short	1295	high	7772013	chromoarm	223	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	21640028	21640057	AT3TE88125	.	+	ATREP10D	Helitron	RC	29	tiny	1295	high	7772907	chromoarm	550	no-CHH	no-CHH	.	.	.	.	.
Chr3	21654093	21654224	AT3TE88180	.	+	TNAT1A	.	DNA	131	short	162	medium	7786972	chromoarm	197	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	21654242	21656304	AT3TE88185	.	-	ATREP10D	Helitron	RC	2062	medium	1295	high	7787121	chromoarm	346	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	21675350	21675455	AT3TE88260	.	+	ATHILA8B	Gypsy	LTR	105	short	78	medium	7808229	chromoarm	711	no-CHH	no-CHH	.	.	.	.	.
Chr3	21694041	21694104	AT3TE88340	.	+	HELITRONY1E	Helitron	RC	63	tiny	447	high	7826920	chromoarm	1366	no-CHH	no-CHH	.	.	.	.	.
Chr3	21694104	21694936	AT3TE88345	.	+	ATREP14	Helitron	RC	832	short	47	low	7826983	chromoarm	1412	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	21694936	21695767	AT3TE88350	.	+	ATREP3	Helitron	RC	831	short	1439	high	7827815	chromoarm	581	no-CHH	no-CHH	.	.	.	.	.
Chr3	21702411	21702846	AT3TE88380	.	-	VANDAL17	MuDR	DNA	435	short	178	medium	7835290	chromoarm	0	no-CHH	no-CHH	ExpressedAndAnnotated	21701530	21703091	+	transcript_id-"bf716af9-9682-4329-aabe-c36400a490b4|12"
Chr3	21706196	21706685	AT3TE88390	.	-	HELITRONY3	Helitron	RC	489	short	1399	high	7839075	chromoarm	133	no-CHH	no-CHH	.	.	.	.	.
Chr3	21747914	21748125	AT3TE88570	.	-	HELITRONY2	Helitron	RC	211	short	198	medium	7880793	chromoarm	436	no-CHH	no-CHH	.	.	.	.	.
Chr3	21761186	21761288	AT3TE88630	.	-	ATDNAI27T9C	MuDR	DNA	102	short	108	medium	7894065	chromoarm	1268	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	21765878	21766823	AT3TE88640	.	+	SADHU	.	Unassigned	945	short	16	low	7898757	chromoarm	572	no-CHH	no-CHH	ExpressedAndAnnotated	21765961,21766011	21766838,21766768	+,+	transcript_id-"f5ae997e-d8ee-4ee6-b55f-9d157232ec0a|6",transcript_id-"0b98ff8f-9d09-49c7-9846-1aa447787686|6"
Chr3	21786540	21786643	AT3TE88720	.	-	ATMU6	MuDR	DNA	103	short	26	low	7919419	chromoarm	502	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	21801991	21802330	AT3TE88790	.	+	ATHPOGON1	Pogo	DNA	339	short	174	medium	7934870	chromoarm	455	no-CHH	no-CHH	.	.	.	.	.
Chr3	21869316	21870256	AT3TE89080	.	+	HELITRONY1B	Helitron	RC	940	short	414	high	8002195	chromoarm	615	no-CHH	no-CHH	.	.	.	.	.
Chr3	21870256	21870294	AT3TE89085	.	-	BRODYAGA2	MuDR	DNA	38	tiny	525	high	8003135	chromoarm	1555	no-CHH	no-CHH	.	.	.	.	.
Chr3	21882626	21883496	AT3TE89130	.	-	SIMPLEHAT1	HAT	DNA	870	short	56	medium	8015505	chromoarm	167	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	21883496	21883519	AT3TE89135	.	-	SIMPLEHAT1	HAT	DNA	23	tiny	56	medium	8016375	chromoarm	1037	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	21940462	21941185	AT3TE89370	.	-	ATREP15	Helitron	RC	723	short	1003	high	8073341	chromoarm	820	no-CHH	no-CHH	.	.	.	.	.
Chr3	21941185	21941257	AT3TE89375	.	-	BRODYAGA1A	MuDR	DNA	72	tiny	586	high	8074064	chromoarm	802	no-CHH	no-CHH	.	.	.	.	.
Chr3	21943415	21943442	AT3TE89380	.	-	ATREP4	Helitron	RC	27	tiny	832	high	8076294	chromoarm	766	no-CHH	no-CHH	.	.	.	.	.
Chr3	21943442	21944183	AT3TE89385	.	+	ARNOLDY1	MuDR	DNA	741	short	237	high	8076321	chromoarm	25	no-CHH	no-CHH	.	.	.	.	.
Chr3	21967138	21967287	AT3TE89480	.	-	ATREP3	Helitron	RC	149	short	1439	high	8100017	chromoarm	641	no-CHH	no-CHH	.	.	.	.	.
Chr3	21967287	21968306	AT3TE89485	.	+	ATREP10B	Helitron	RC	1019	short	491	high	8100166	chromoarm	790	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	21968306	21968475	AT3TE89490	.	-	ATREP3	Helitron	RC	169	short	1439	high	8101185	chromoarm	1809	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	21981093	21981117	AT3TE89540	.	-	ATREP3	Helitron	RC	24	tiny	1439	high	8113972	chromoarm	996	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	21981117	21982035	AT3TE89545	.	-	ATHATN10	HAT	DNA	918	short	48	low	8113996	chromoarm	1020	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	21989989	21990311	AT3TE89570	.	-	ATDNA2T9C	MuDR	DNA	322	short	242	high	8122868	chromoarm	277	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	22002791	22002891	AT3TE89620	.	-	BRODYAGA2	MuDR	DNA	100	short	525	high	8135670	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	22013110	22014029	AT3TE89660	.	+	ATREP4	Helitron	RC	919	short	832	high	8145989	chromoarm	137	no-CHH	no-CHH	.	.	.	.	.
Chr3	22019071	22019538	AT3TE89680	.	+	ATREP10B	Helitron	RC	467	short	491	high	8151950	chromoarm	14	no-CHH	no-CHH	.	.	.	.	.
Chr3	22023891	22023991	AT3TE89690	.	+	ATENSPM2	En-Spm	DNA	100	short	114	medium	8156770	chromoarm	47	no-CHH	no-CHH	.	.	.	.	.
Chr3	22031823	22033051	AT3TE89720	.	+	ATREP5	Helitron	RC	1228	short	624	high	8164702	chromoarm	164	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	22033051	22033121	AT3TE89725	.	+	ATREP3	Helitron	RC	70	tiny	1439	high	8165930	chromoarm	94	no-CHH	no-CHH	.	.	.	.	.
Chr3	22047553	22048105	AT3TE89780	.	-	ATREP15	Helitron	RC	552	short	1003	high	8180432	chromoarm	1466	no-CHH	no-CHH	.	.	.	.	.
Chr3	22055628	22055981	AT3TE89810	.	+	BRODYAGA1A	MuDR	DNA	353	short	586	high	8188507	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	22057812	22057849	AT3TE89815	.	-	ATREP4	Helitron	RC	37	tiny	832	high	8190691	chromoarm	656	no-CHH	no-CHH	.	.	.	.	.
Chr3	22057849	22058180	AT3TE89820	.	-	DT1	Mariner	DNA	331	short	123	medium	8190728	chromoarm	693	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	22058181	22058406	AT3TE89825	.	-	ATREP4	Helitron	RC	225	short	832	high	8191060	chromoarm	1025	no-RdDM	no-CHH	.	.	.	.	.
Chr3	22059534	22064329	AT3TE89830	.	+	ATCOPIA78	Copia	LTR	4795	medium	24	low	8192413	chromoarm	0	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	22076419	22076835	AT3TE89880	.	-	ATCOPIA41	Copia	LTR	416	short	39	low	8209298	chromoarm	1074	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	22076600	22076627	AT3TE89885	.	-	ATCOPIA41	Copia	LTR	27	tiny	39	low	8209479	chromoarm	1255	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	22091490	22092290	AT3TE89940	.	-	ATREP15	Helitron	RC	800	short	1003	high	8224369	chromoarm	157	no-CHH	no-CHH	.	.	.	.	.
Chr3	22112932	22115657	AT3TE90030	.	-	VANDAL2N1	MuDR	DNA	2725	medium	51	medium	8245811	chromoarm	703	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	22118371	22118465	AT3TE90040	.	+	ATREP4	Helitron	RC	94	tiny	832	high	8251250	chromoarm	319	no-CHH	no-CHH	.	.	.	.	.
Chr3	22118465	22120683	AT3TE90045	.	+	ATREP3	Helitron	RC	2218	medium	1439	high	8251344	chromoarm	385	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	22120683	22120877	AT3TE90050	.	+	ATREP4	Helitron	RC	194	short	832	high	8253562	chromoarm	191	no-CHH	no-CHH	.	.	.	.	.
Chr3	22172504	22172659	AT3TE90270	.	-	ATREP15	Helitron	RC	155	short	1003	high	8305383	chromoarm	3094	no-CHH	no-CHH	.	.	.	.	.
Chr3	22172659	22172753	AT3TE90275	.	-	ATREP11	Helitron	RC	94	tiny	841	high	8305538	chromoarm	3183	no-RdDM	no-CHH	.	.	.	.	.
Chr3	22172753	22173694	AT3TE90280	.	-	ATREP11	Helitron	RC	941	short	841	high	8305632	chromoarm	2242	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	22173694	22173761	AT3TE90285	.	-	ATREP1	Helitron	RC	67	tiny	498	high	8306573	chromoarm	2175	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	22214635	22214773	AT3TE90450	.	-	RathE1_cons	.	RathE1_cons	139	short	213	high	8347513	chromoarm	984	.	.	.	.	.	.	.
Chr3	22214773	22215278	AT3TE90455	.	-	ATREP10D	Helitron	RC	505	short	1295	high	8347652	chromoarm	1123	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	22215278	22215958	AT3TE90460	.	-	ATREP13	Helitron	RC	680	short	106	medium	8348157	chromoarm	794	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	22232307	22236743	AT3TE90530	.	+	ATCOPIA23	Copia	LTR	4436	medium	8	low	8365186	chromoarm	3112	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	22232056	22232402	+	transcript_id-"3fc9ad9c-ec38-4ec2-8761-bef441e5f66d|4"
Chr3	22236743	22236786	AT3TE90535	.	+	ATCOPIA31	Copia	LTR	43	tiny	8	low	8369622	chromoarm	5994	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	22237391	22237463	AT3TE90540	.	-	ATLANTYS3	Gypsy	LTR	73	tiny	142	medium	8370269	chromoarm	5317	.	.	.	.	.	.	.
Chr3	22237509	22239187	AT3TE90545	.	-	ATLANTYS2	Gypsy	LTR	1678	short	179	medium	8370388	chromoarm	3593	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr3	22238388	22238711	AT3TE90550	.	+	VANDAL6	MuDR	DNA	323	short	89	medium	8371267	chromoarm	4069	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	22240253	22240300	AT3TE90555	.	-	ATLANTYS3	Gypsy	LTR	47	tiny	142	medium	8373132	chromoarm	2480	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	22240300	22240767	AT3TE90560	.	+	VANDAL6	MuDR	DNA	467	short	89	medium	8373179	chromoarm	2013	no-RdDM	no-CHH	.	.	.	.	.
Chr3	22241735	22241807	AT3TE90565	.	-	ATLANTYS3	Gypsy	LTR	73	tiny	142	medium	8374613	chromoarm	973	.	.	.	.	.	.	.
Chr3	22241852	22242081	AT3TE90570	.	-	ATLANTYS2	Gypsy	LTR	230	short	179	medium	8374730	chromoarm	699	.	.	.	.	.	.	.
Chr3	22252914	22253231	AT3TE90620	.	-	ARNOLDY2	MuDR	DNA	317	short	288	high	8385793	chromoarm	205	no-CHH	no-CHH	.	.	.	.	.
Chr3	22260252	22260675	AT3TE90650	.	+	ATREP11	Helitron	RC	424	short	841	high	8393130	chromoarm	1166	.	.	.	.	.	.	.
Chr3	22311271	22311926	AT3TE90870	.	-	HELITRONY1D	Helitron	RC	655	short	756	high	8444150	chromoarm	550	no-CHH	no-CHH	.	.	.	.	.
Chr3	22311926	22311958	AT3TE90875	.	+	BRODYAGA2	MuDR	DNA	32	tiny	525	high	8444805	chromoarm	518	no-CHH	no-CHH	.	.	.	.	.
Chr3	22362078	22362195	AT3TE91080	.	-	HELITRONY1D	Helitron	RC	117	short	756	high	8494957	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	22362499	22362603	AT3TE91085	.	-	ATDNAI27T9A	MuDR	DNA	104	short	116	medium	8495378	chromoarm	32	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	22383091	22383164	AT3TE91170	.	+	ATLINE1_3A	L1	LINE	74	tiny	160	medium	8515969	chromoarm	312	.	.	.	.	.	.	.
Chr3	22384064	22384111	AT3TE91175	.	-	ATCOPIA46	Copia	LTR	47	tiny	7	low	8516943	chromoarm	1286	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr3	22384111	22385643	AT3TE91180	.	-	ATCOPIA51	Copia	LTR	1532	short	14	low	8516990	chromoarm	1333	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	22385644	22385678	AT3TE91185	.	-	ATCOPIA52	Copia	LTR	35	tiny	7	low	8518522	chromoarm	2865	.	.	.	.	.	.	.
Chr3	22385679	22385704	AT3TE91190	.	-	ATCOPIA79	Copia	LTR	26	tiny	7	low	8518557	chromoarm	2900	.	.	.	.	.	.	.
Chr3	22385718	22385750	AT3TE91195	.	-	ATCOPIA25	Copia	LTR	33	tiny	9	low	8518596	chromoarm	2939	.	.	.	.	.	.	.
Chr3	22385750	22390053	AT3TE91200	.	-	ATCOPIA51	Copia	LTR	4303	medium	14	low	8518629	chromoarm	1193	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr3	22387545	22387588	AT3TE91205	.	-	ATCOPIA52	Copia	LTR	44	tiny	7	low	8520423	chromoarm	3658	.	.	.	.	.	.	.
Chr3	22387589	22387613	AT3TE91210	.	-	ATCOPIA51	Copia	LTR	25	tiny	14	low	8520467	chromoarm	3633	.	.	.	.	.	.	.
Chr3	22390054	22390088	AT3TE91220	.	-	ATCOPIA52	Copia	LTR	35	tiny	7	low	8522932	chromoarm	1158	.	.	.	.	.	.	.
Chr3	22390488	22390561	AT3TE91225	.	+	ATLINE1_3A	L1	LINE	74	tiny	160	medium	8523366	chromoarm	685	.	.	.	.	.	.	.
Chr3	22428294	22428602	AT3TE91380	.	+	BRODYAGA1A	MuDR	DNA	308	short	586	high	8561173	chromoarm	1643	no-CHH	no-CHH	.	.	.	.	.
Chr3	22444391	22444476	AT3TE91450	.	+	ATHILA7	Gypsy	LTR	85	tiny	134	medium	8577270	chromoarm	478	no-CHH	no-CHH	.	.	.	.	.
Chr3	22458092	22458455	AT3TE91510	.	-	HELITRON4	Helitron	RC	363	short	199	medium	8590971	chromoarm	160	no-CHH	no-CHH	.	.	.	.	.
Chr3	22458455	22458518	AT3TE91515	.	+	BRODYAGA1A	MuDR	DNA	63	tiny	586	high	8591334	chromoarm	97	no-CHH	no-CHH	.	.	.	.	.
Chr3	22470261	22470315	AT3TE91560	.	-	ATLINEIII	L1	LINE	54	tiny	196	medium	8603140	chromoarm	263	no-CHH	no-CHH	.	.	.	.	.
Chr3	22476856	22477419	AT3TE91590	.	+	ATHPOGO	Pogo	DNA	563	short	25	low	8609735	chromoarm	153	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	22513475	22513495	AT3TE91740	.	-	ATLANTYS2	Gypsy	LTR	20	tiny	179	medium	8646354	chromoarm	444	no-CHH	no-CHH	.	.	.	.	.
Chr3	22513495	22521209	AT3TE91745	.	-	ATLANTYS2	Gypsy	LTR	7714	long	179	medium	8646374	chromoarm	405	no-CHH	no-CHH	ExpressedAndAnnotated	22514027	22516868	+	transcript_id-"e2595568-fdea-4ebc-9c03-e060a005543b|12"
Chr3	22522314	22522575	AT3TE91750	.	+	BRODYAGA1	MuDR	DNA	261	short	251	high	8655193	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	22530082	22530485	AT3TE91780	.	-	ATENSPM10	En-Spm	DNA	404	short	81	medium	8662960	chromoarm	311	.	.	.	.	.	.	.
Chr3	22533167	22533743	AT3TE91790	.	-	ATLANTYS3	Gypsy	LTR	576	short	142	medium	8666046	chromoarm	1985	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	22538757	22538868	AT3TE91810	.	+	ATREP15	Helitron	RC	111	short	1003	high	8671636	chromoarm	1817	no-CHH	no-CHH	.	.	.	.	.
Chr3	22538868	22540241	AT3TE91815	.	+	ATREP11	Helitron	RC	1373	short	841	high	8671747	chromoarm	1077	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	22540241	22540608	AT3TE91820	.	+	ATREP3	Helitron	RC	367	short	1439	high	8673120	chromoarm	710	no-CHH	no-CHH	.	.	.	.	.
Chr3	22540608	22540892	AT3TE91825	.	+	ATREP10D	Helitron	RC	284	short	1295	high	8673487	chromoarm	426	no-CHH	no-CHH	.	.	.	.	.
Chr3	22540892	22541284	AT3TE91830	.	+	ATREP19	.	DNA	392	short	189	medium	8673771	chromoarm	34	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	22541412	22541536	AT3TE91835	.	-	ATCOPIA26	Copia	LTR	124	short	19	low	8674291	chromoarm	0	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	22541538	22542618	AT3TE91840	.	-	ATCOPIA13	Copia	LTR	1080	short	35	low	8674417	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	22543691	22543790	AT3TE91845	.	-	ATLINEIII	L1	LINE	99	tiny	196	medium	8676570	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	22543790	22545026	AT3TE91850	.	-	ATLINEIII	L1	LINE	1236	short	196	medium	8676669	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	22545026	22545207	AT3TE91855	.	-	ATLINEIII	L1	LINE	181	short	196	medium	8677905	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	22547841	22548415	AT3TE91865	.	-	ATCOPIA94	Copia	LTR	574	short	39	low	8680720	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	22548415	22551263	AT3TE91870	.	-	ATCOPIA13	Copia	LTR	2848	medium	35	low	8681294	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	22551265	22551338	AT3TE91875	.	-	ATCOPIA12	Copia	LTR	73	tiny	15	low	8684144	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	22562667	22562935	AT3TE91920	.	-	ATHATN4	HAT	DNA	268	short	56	medium	8695546	chromoarm	1092	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	22563805	22564130	AT3TE91925	.	+	TA11	L1	LINE	325	short	157	medium	8696684	chromoarm	1309	no-CHH	no-CHH	.	.	.	.	.
Chr3	22564326	22564591	AT3TE91930	.	+	ATCOPIA57	Copia	LTR	265	short	48	low	8697205	chromoarm	848	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	22567464	22568840	AT3TE91940	.	-	HELITRONY1E	Helitron	RC	1376	short	447	high	8700343	chromoarm	442	no-CHH	no-CHH	.	.	.	.	.
Chr3	22568840	22569018	AT3TE91945	.	+	HELITRON2	Helitron	RC	178	short	194	medium	8701719	chromoarm	264	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	22569019	22569103	AT3TE91950	.	+	ATREP3	Helitron	RC	85	tiny	1439	high	8701897	chromoarm	179	.	.	LowExpressed	.	.	.	.
Chr3	22577333	22578601	AT3TE91990	.	-	SIMPLEGUY1	Harbinger	DNA	1268	short	116	medium	8710212	chromoarm	2904	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr3	22578164	22578188	AT3TE91995	.	-	SIMPLEGUY1	Harbinger	DNA	24	tiny	116	medium	8711043	chromoarm	3317	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr3	22578602	22578729	AT3TE92000	.	-	SIMPLEGUY1	Harbinger	DNA	128	short	116	medium	8711480	chromoarm	2776	.	.	.	.	.	.	.
Chr3	22578729	22578751	AT3TE92005	.	-	SIMPLEGUY1	Harbinger	DNA	22	tiny	116	medium	8711608	chromoarm	2754	no-CHH	no-CHH	.	.	.	.	.
Chr3	22579202	22579416	AT3TE92010	.	+	VANDAL6	MuDR	DNA	214	short	89	medium	8712081	chromoarm	2089	no-CHH	no-CHH	.	.	.	.	.
Chr3	22579592	22580030	AT3TE92015	.	-	ATLANTYS2	Gypsy	LTR	438	short	179	medium	8712471	chromoarm	1475	no-CHH	no-CHH	.	.	.	.	.
Chr3	22580555	22580596	AT3TE92020	.	+	VANDAL6	MuDR	DNA	41	tiny	89	medium	8713434	chromoarm	909	no-CHH	no-CHH	.	.	.	.	.
Chr3	22580779	22580823	AT3TE92025	.	-	ATLANTYS3	Gypsy	LTR	44	tiny	142	medium	8713658	chromoarm	682	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	22580823	22581304	AT3TE92030	.	+	VANDAL6	MuDR	DNA	481	short	89	medium	8713702	chromoarm	201	no-CHH	no-CHH	.	.	.	.	.
Chr3	22581814	22581854	AT3TE92035	.	-	ATGP9LTR	Gypsy	LTR	40	tiny	10	low	8714693	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	22591263	22591666	AT3TE92070	.	-	ATENSPM10	En-Spm	DNA	404	short	81	medium	8724141	chromoarm	585	.	.	.	.	.	.	.
Chr3	22625557	22626150	AT3TE92210	.	+	HELITRONY2	Helitron	RC	593	short	198	medium	8758436	chromoarm	43	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	22643179	22643299	AT3TE92280	.	-	ATDNA2T9C	MuDR	DNA	120	short	242	high	8776058	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	22643299	22643735	AT3TE92285	.	+	BRODYAGA1	MuDR	DNA	436	short	251	high	8776178	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	22643735	22643775	AT3TE92290	.	-	BRODYAGA1A	MuDR	DNA	40	tiny	586	high	8776614	chromoarm	426	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	22644680	22645496	AT3TE92295	.	-	BRODYAGA2	MuDR	DNA	816	short	525	high	8777559	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	22649020	22649723	AT3TE92305	.	-	BRODYAGA2	MuDR	DNA	703	short	525	high	8781899	chromoarm	882	no-CHH	no-CHH	.	.	.	.	.
Chr3	22651626	22652003	AT3TE92310	.	+	HELITRON4	Helitron	RC	377	short	199	medium	8784505	chromoarm	211	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	22652003	22652155	AT3TE92315	.	-	HELITRONY1B	Helitron	RC	152	short	414	high	8784882	chromoarm	588	no-CHH	no-CHH	.	.	.	.	.
Chr3	22660299	22660734	AT3TE92340	.	-	ATDNAI27T9B	MuDR	DNA	435	short	43	low	8793178	chromoarm	484	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	22660826	22661542	AT3TE92345	.	+	ATDNAI27T9B	MuDR	DNA	716	short	43	low	8793705	chromoarm	1011	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	22661542	22661643	AT3TE92350	.	-	ATDNAI26T9	MuDR	DNA	101	short	25	low	8794421	chromoarm	1381	PolIV-and-RDR6-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	22661643	22661899	AT3TE92355	.	+	ATDNA1T9A	MuDR	DNA	256	short	36	low	8794522	chromoarm	1125	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	22662351	22662578	AT3TE92360	.	+	ATDNAI27T9A	MuDR	DNA	227	short	116	medium	8795230	chromoarm	446	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	22673909	22673931	AT3TE92410	.	+	ATREP3	Helitron	RC	22	tiny	1439	high	8806788	chromoarm	1358	RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	22673931	22674899	AT3TE92415	.	+	ATREP10B	Helitron	RC	968	short	491	high	8806810	chromoarm	503	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	22674899	22675067	AT3TE92420	.	-	ATREP11	Helitron	RC	168	short	841	high	8807778	chromoarm	335	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	22675067	22675100	AT3TE92425	.	+	ATREP10B	Helitron	RC	33	tiny	491	high	8807946	chromoarm	302	no-RdDM	no-CHH	.	.	.	.	.
Chr3	22675100	22675249	AT3TE92430	.	-	ATREP10D	Helitron	RC	149	short	1295	high	8807979	chromoarm	153	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	22683582	22684106	AT3TE92470	.	-	HELITRONY2	Helitron	RC	524	short	198	medium	8816461	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	22684106	22684187	AT3TE92475	.	+	ATREP19	.	DNA	81	tiny	189	medium	8816985	chromoarm	219	no-CHH	no-CHH	.	.	.	.	.
Chr3	22695521	22695565	AT3TE92520	.	-	ATCOPIA78	Copia	LTR	44	tiny	24	low	8828400	chromoarm	47	no-RdDM	no-CHH	.	.	.	.	.
Chr3	22695565	22700522	AT3TE92525	.	-	ATCOPIA78	Copia	LTR	4957	medium	24	low	8828444	chromoarm	91	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	22706610	22706764	AT3TE92550	.	-	HELITRON5	Helitron	RC	154	short	56	medium	8839489	chromoarm	484	no-CHH	no-CHH	.	.	.	.	.
Chr3	22747218	22747905	AT3TE92720	.	-	ATREP3	Helitron	RC	687	short	1439	high	8880097	chromoarm	186	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	22747603	22747867	AT3TE92725	.	-	ATHPOGON1	Pogo	DNA	264	short	174	medium	8880482	chromoarm	571	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	22748389	22748477	AT3TE92730	.	+	ATCOPIA68	Copia	LTR	88	tiny	43	low	8881268	chromoarm	1357	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr3	22749192	22749776	AT3TE92735	.	+	ATREP15	Helitron	RC	584	short	1003	high	8882071	chromoarm	207	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	22762537	22763426	AT3TE92780	.	-	HELITRONY3	Helitron	RC	889	short	1399	high	8895416	chromoarm	68	no-CHH	no-CHH	.	.	.	.	.
Chr3	22763426	22763498	AT3TE92785	.	-	ATREP10D	Helitron	RC	72	tiny	1295	high	8896305	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	22767203	22767665	AT3TE92795	.	-	VANDAL6	MuDR	DNA	462	short	89	medium	8900082	chromoarm	1308	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	22767665	22767753	AT3TE92800	.	-	VANDAL6	MuDR	DNA	88	tiny	89	medium	8900544	chromoarm	1220	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	22767753	22767797	AT3TE92805	.	+	ATLANTYS3	Gypsy	LTR	44	tiny	142	medium	8900632	chromoarm	1176	DCL3-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	22767980	22768018	AT3TE92810	.	-	VANDAL6	MuDR	DNA	38	tiny	89	medium	8900859	chromoarm	955	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	22790362	22790531	AT3TE92910	.	+	RathE1_cons	.	RathE1_cons	169	short	213	high	8923241	chromoarm	2382	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	22806978	22807192	AT3TE92980	.	-	BRODYAGA1A	MuDR	DNA	214	short	586	high	8939857	chromoarm	757	no-CHH	no-CHH	.	.	.	.	.
Chr3	22835185	22835321	AT3TE93100	.	-	LIMPET1	MuDR	DNA	136	short	116	medium	8968064	chromoarm	1092	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr3	22845819	22845937	AT3TE93140	.	-	BRODYAGA2	MuDR	DNA	118	short	525	high	8978698	chromoarm	421	no-CHH	no-CHH	.	.	.	.	.
Chr3	22847973	22848033	AT3TE93145	.	-	ATLINE1_3A	L1	LINE	61	tiny	160	medium	8980851	chromoarm	393	.	.	.	.	.	.	.
Chr3	22888097	22888184	AT3TE93310	.	+	VANDAL8	MuDR	DNA	87	tiny	123	medium	9020976	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	22954474	22954975	AT3TE93590	.	-	HELITRONY3	Helitron	RC	501	short	1399	high	9087353	chromoarm	1368	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	22961314	22962073	AT3TE93620	.	-	ATREP10B	Helitron	RC	759	short	491	high	9094193	chromoarm	134	no-CHH	no-CHH	.	.	.	.	.
Chr3	22962073	22962469	AT3TE93625	.	+	ATREP15	Helitron	RC	396	short	1003	high	9094952	chromoarm	893	no-CHH	no-CHH	.	.	.	.	.
Chr3	22963676	22964509	AT3TE93630	.	+	ATREP10D	Helitron	RC	833	short	1295	high	9096555	chromoarm	435	no-CHH	no-CHH	.	.	.	.	.
Chr3	22977848	22977938	AT3TE93690	.	-	TNAT1A	.	DNA	90	tiny	162	medium	9110727	chromoarm	366	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	22990567	22990631	AT3TE93740	.	-	ATENSPM10	En-Spm	DNA	64	tiny	81	medium	9123446	chromoarm	21	no-CHH	no-CHH	.	.	.	.	.
Chr3	23068363	23068762	AT3TE94070	.	-	ATREP5	Helitron	RC	399	short	624	high	9201242	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	23072257	23072787	AT3TE94080	.	-	ATREP10D	Helitron	RC	530	short	1295	high	9205136	chromoarm	232	no-CHH	no-CHH	.	.	.	.	.
Chr3	23085197	23085517	AT3TE94130	.	-	ATREP10D	Helitron	RC	320	short	1295	high	9218076	chromoarm	345	no-CHH	no-CHH	.	.	.	.	.
Chr3	23085517	23086101	AT3TE94135	.	+	ATREP2	Helitron	RC	584	short	164	medium	9218396	chromoarm	665	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr3	23100295	23100351	AT3TE94190	.	-	ATCOPIA36	Copia	LTR	56	tiny	14	low	9233174	chromoarm	1665	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	23100351	23104844	AT3TE94195	.	-	ATCOPIA23	Copia	LTR	4493	medium	8	low	9233230	chromoarm	40	no-CHH	no-CHH	ExpressedAndAnnotated	23105671	23104664	-	transcript_id-"745ef09b-2661-4f89-b45d-b6219cde45db|8"
Chr3	23105891	23106053	AT3TE94200	.	+	ATCOPIA65	Copia	LTR	162	short	34	low	9238770	chromoarm	312	no-CHH	no-CHH	.	.	.	.	.
Chr3	23108856	23109114	AT3TE94210	.	-	ATLANTYS3	Gypsy	LTR	258	short	142	medium	9241735	chromoarm	457	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr3	23109114	23109445	AT3TE94215	.	+	ATLANTYS3	Gypsy	LTR	331	short	142	medium	9241993	chromoarm	715	no-RdDM	no-RdDM	.	.	.	.	.
Chr3	23109445	23115857	AT3TE94220	.	+	ATLANTYS3	Gypsy	LTR	6412	long	142	medium	9242324	chromoarm	1046	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	23118447	23118546	AT3TE94230	.	-	HELITRONY1B	Helitron	RC	99	tiny	414	high	9251326	chromoarm	1372	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr3	23118546	23119829	AT3TE94235	.	+	HELITRONY1E	Helitron	RC	1283	short	447	high	9251425	chromoarm	89	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	23119829	23119886	AT3TE94240	.	-	ATREP3	Helitron	RC	57	tiny	1439	high	9252708	chromoarm	32	no-CHH	no-CHH	.	.	.	.	.
Chr3	23119886	23119942	AT3TE94245	.	-	ATREP11A	Helitron	RC	56	tiny	95	medium	9252765	chromoarm	0	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr3	23124403	23124633	AT3TE94255	.	+	ATHATN3	HAT	DNA	230	short	70	medium	9257282	chromoarm	629	no-CHH	no-CHH	.	.	.	.	.
Chr3	23125186	23127239	AT3TE94260	.	+	ATHAT3	HAT	DNA	2053	medium	23	low	9258065	chromoarm	1412	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	23127239	23127625	AT3TE94265	.	+	ATHAT7	HAT	DNA	386	short	20	low	9260118	chromoarm	3465	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	23140463	23140690	AT3TE94310	.	-	BRODYAGA1A	MuDR	DNA	227	short	586	high	9273342	chromoarm	1583	no-CHH	no-CHH	.	.	.	.	.
Chr3	23142476	23142631	AT3TE94315	.	-	LIMPET1	MuDR	DNA	155	short	116	medium	9275355	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	23158390	23158725	AT3TE94380	.	-	ATMUN1	MuDR	DNA	335	short	107	medium	9291269	chromoarm	1119	no-CHH	no-RdDM	.	.	.	.	.
Chr3	23172009	23172051	AT3TE94440	.	+	HELITRON4	Helitron	RC	42	tiny	199	medium	9304888	chromoarm	1367	no-CHH	no-CHH	.	.	.	.	.
Chr3	23172051	23172786	AT3TE94445	.	-	ATREP15	Helitron	RC	735	short	1003	high	9304930	chromoarm	632	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	23172786	23172923	AT3TE94450	.	-	ATREP10D	Helitron	RC	137	short	1295	high	9305665	chromoarm	495	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr3	23203576	23207484	AT3TE94580	.	-	ATLINEIII	L1	LINE	3908	medium	196	medium	9336455	chromoarm	518	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr3	23207484	23207582	AT3TE94585	.	-	ATLINEIII	L1	LINE	98	tiny	196	medium	9340363	chromoarm	420	no-CHH	no-CHH	.	.	.	.	.
Chr3	23221263	23221745	AT3TE94640	.	-	ATREP19	.	DNA	482	short	189	medium	9354142	chromoarm	153	no-CHH	no-CHH	.	.	.	.	.
Chr3	23224630	23224806	AT3TE94650	.	-	ATHPOGON1	Pogo	DNA	176	short	174	medium	9357509	chromoarm	409	no-CHH	no-CHH	.	.	.	.	.
Chr3	23255524	23256357	AT3TE94780	.	-	HELITRONY1D	Helitron	RC	833	short	756	high	9388403	chromoarm	489	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr3	23256357	23256844	AT3TE94785	.	+	ATREP5	Helitron	RC	487	short	624	high	9389236	chromoarm	2	no-CHH	no-CHH	.	.	.	.	.
Chr3	23279975	23280869	AT3TE94880	.	+	ATREP4	Helitron	RC	894	short	832	high	9412854	chromoarm	1038	no-CHH	no-CHH	.	.	.	.	.
Chr3	23280869	23280910	AT3TE94885	.	+	BRODYAGA2	MuDR	DNA	41	tiny	525	high	9413748	chromoarm	997	no-CHH	RDR6-RdDM	.	.	.	.	.
Chr3	23289885	23289956	AT3TE94920	.	-	ATDNAI27T9C	MuDR	DNA	71	tiny	108	medium	9422764	chromoarm	0	no-RdDM	no-CHH	.	.	.	.	.
Chr3	23328460	23328610	AT3TE95080	.	-	VANDAL17	MuDR	DNA	150	short	178	medium	9461339	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr3	23348719	23349420	AT3TE95170	.	-	HELITRONY1D	Helitron	RC	701	short	756	high	9481598	chromoarm	1340	no-CHH	no-CHH	.	.	.	.	.
Chr3	23349420	23349909	AT3TE95175	.	+	ATREP10B	Helitron	RC	489	short	491	high	9482299	chromoarm	2041	no-CHH	no-CHH	.	.	.	.	.
Chr3	23349909	23349965	AT3TE95180	.	+	BRODYAGA1	MuDR	DNA	56	tiny	251	high	9482788	chromoarm	2530	no-CHH	no-CHH	.	.	.	.	.
Chr3	23367232	23367424	AT3TE95250	.	-	ATDNAI27T9C	MuDR	DNA	192	short	108	medium	9500111	chromoarm	356	no-CHH	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr3	23416362	23416443	AT3TE95460	.	-	VANDAL8	MuDR	DNA	81	tiny	123	medium	9549241	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	2191	2239	AT4TE00010	.	-	BRODYAGA2	MuDR	DNA	48	tiny	525	high	3131425	chromoarm	655	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	2239	2622	AT4TE00015	.	+	ATREP5	Helitron	RC	383	short	624	high	3131042	chromoarm	272	no-RdDM	no-CHH	.	.	.	.	.
Chr4	15892	15964	AT4TE00080	.	+	AT9TSD1	MuDR	DNA	72	tiny	55	medium	3117700	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	15964	17542	AT4TE00085	.	+	ATREP11	Helitron	RC	1578	short	841	high	3116122	chromoarm	67	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	17542	17859	AT4TE00090	.	+	HELITRONY1D	Helitron	RC	317	short	756	high	3115805	chromoarm	3	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	30986	32299	AT4TE00160	.	+	ATREP3	Helitron	RC	1313	short	1439	high	3101365	chromoarm	0	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	33798	33851	AT4TE00165	.	+	ATLINEIII	L1	LINE	53	tiny	196	medium	3099813	chromoarm	223	no-RdDM	no-CHH	.	.	.	.	.
Chr4	41644	41788	AT4TE00200	.	-	RathE1_cons	.	RathE1_cons	144	short	213	high	3091876	chromoarm	812	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	43384	43540	AT4TE00205	.	-	ATTIRTA1	Tc1	DNA	156	short	95	medium	3090124	chromoarm	187	no-CHH	no-CHH	.	.	.	.	.
Chr4	47208	47710	AT4TE00215	.	+	AT9TSD1	MuDR	DNA	502	short	55	medium	3085954	chromoarm	703	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	50300	50657	AT4TE00225	.	+	ATGP2N	Gypsy	LTR	357	short	54	medium	3083007	chromoarm	508	no-RdDM	no-CHH	.	.	.	.	.
Chr4	50675	52341	AT4TE00230	.	-	ATGP2N	Gypsy	LTR	1666	short	54	medium	3081323	chromoarm	0	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	53735	53929	AT4TE00235	.	-	RathE3_cons	.	RathE3_cons	194	short	104	medium	3079735	chromoarm	286	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	66081	66278	AT4TE00300	.	-	HELITRONY3	Helitron	RC	197	short	1399	high	3067386	chromoarm	716	no-CHH	no-CHH	.	.	.	.	.
Chr4	66281	66449	AT4TE00305	.	+	HELITRONY3	Helitron	RC	168	short	1399	high	3067215	chromoarm	916	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	66449	67743	AT4TE00310	.	-	ATREP10D	Helitron	RC	1294	short	1295	high	3065921	chromoarm	1084	PolIV-and-RDR6-RdDM	RDR6-RdDM	.	.	.	.	.
Chr4	67743	67765	AT4TE00315	.	+	ATREP4	Helitron	RC	22	tiny	832	high	3065899	chromoarm	1667	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	68734	69015	AT4TE00320	.	+	TSCL	.	LINE?	281	short	81	medium	3064649	chromoarm	417	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	78865	78895	AT4TE00370	.	+	HELITRONY1E	Helitron	RC	30	tiny	447	high	3054769	chromoarm	1537	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	78895	79006	AT4TE00375	.	-	VANDAL22	MuDR	DNA	111	short	48	low	3054658	chromoarm	1426	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	79006	79898	AT4TE00380	.	+	ATREP10B	Helitron	RC	892	short	491	high	3053766	chromoarm	534	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	79939	80113	AT4TE00385	.	-	VANDAL22	MuDR	DNA	174	short	48	low	3053551	chromoarm	319	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	93026	93867	AT4TE00450	.	+	ATREP3	Helitron	RC	841	short	1439	high	3039797	chromoarm	67	no-CHH	no-CHH	.	.	.	.	.
Chr4	105622	106201	AT4TE00510	.	-	ATHATN5	HAT	DNA	580	short	42	low	3027463	chromoarm	178	.	.	.	.	.	.	.
Chr4	106201	106248	AT4TE00515	.	+	ATREP10B	Helitron	RC	47	tiny	491	high	3027416	chromoarm	131	no-CHH	no-CHH	.	.	.	.	.
Chr4	110997	111050	AT4TE00540	.	-	ATREP11	Helitron	RC	53	tiny	841	high	3022614	chromoarm	279	no-CHH	no-CHH	.	.	.	.	.
Chr4	111050	111658	AT4TE00545	.	-	ATREP3	Helitron	RC	608	short	1439	high	3022006	chromoarm	332	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	111658	111807	AT4TE00550	.	+	ATREP9	Helitron	RC	149	short	201	high	3021857	chromoarm	940	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	111807	111831	AT4TE00555	.	+	ATREP11	Helitron	RC	24	tiny	841	high	3021833	chromoarm	1089	no-CHH	no-CHH	.	.	.	.	.
Chr4	118558	118859	AT4TE00590	.	+	ATREP10D	Helitron	RC	301	short	1295	high	3014805	chromoarm	90	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	118859	119490	AT4TE00595	.	-	ATHPOGON3	Pogo	DNA	631	short	118	medium	3014174	chromoarm	391	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	119490	119553	AT4TE00600	.	+	ATREP7	Helitron	RC	63	tiny	164	medium	3014111	chromoarm	1022	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	119895	119958	AT4TE00605	.	-	ATREP10D	Helitron	RC	63	tiny	1295	high	3013706	chromoarm	1427	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	119958	120129	AT4TE00610	.	+	BRODYAGA2	MuDR	DNA	171	short	525	high	3013535	chromoarm	1490	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	120129	121565	AT4TE00615	.	-	ATREP3	Helitron	RC	1436	short	1439	high	3012099	chromoarm	843	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	121565	121659	AT4TE00620	.	+	HELITRONY3	Helitron	RC	94	tiny	1399	high	3012005	chromoarm	749	no-CHH	no-CHH	.	.	.	.	.
Chr4	128372	128495	AT4TE00660	.	+	ATLINE1A	L1	LINE	123	short	289	high	3005169	chromoarm	0	no-RdDM	no-CHH	.	.	.	.	.
Chr4	132456	132494	AT4TE00680	.	-	ATHATN1	HAT	DNA	38	tiny	69	medium	3001170	chromoarm	526	no-CHH	RDR6-RdDM	.	.	.	.	.
Chr4	135283	135970	AT4TE00690	.	-	HELITRONY3	Helitron	RC	687	short	1399	high	2997694	chromoarm	48	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	135970	135994	AT4TE00695	.	+	ARNOLDY2	MuDR	DNA	24	tiny	288	high	2997670	chromoarm	735	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	144566	144668	AT4TE00740	.	-	HELITRONY1B	Helitron	RC	102	short	414	high	2988996	chromoarm	139	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	144668	145234	AT4TE00745	.	-	ATHATN1	HAT	DNA	566	short	69	medium	2988430	chromoarm	241	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	145234	145634	AT4TE00750	.	-	ATREP3	Helitron	RC	400	short	1439	high	2988030	chromoarm	807	no-CHH	no-CHH	.	.	.	.	.
Chr4	154245	154679	AT4TE00800	.	+	ATHATN4	HAT	DNA	434	short	56	medium	2978985	chromoarm	257	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	157841	158088	AT4TE00810	.	-	ATLINE1A	L1	LINE	247	short	289	high	2975576	chromoarm	1751	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	158120	158566	AT4TE00815	.	-	ATLINE1_5	L1	LINE	446	short	91	medium	2975098	chromoarm	2030	no-CHH	no-CHH	.	.	.	.	.
Chr4	166565	167502	AT4TE00850	.	+	ATREP9	Helitron	RC	938	short	201	high	2966162	chromoarm	453	.	.	LowExpressed	.	.	.	.
Chr4	184156	184238	AT4TE00940	.	+	ATREP15	Helitron	RC	82	tiny	1003	high	2949426	chromoarm	1527	no-CHH	no-CHH	.	.	.	.	.
Chr4	184238	184374	AT4TE00945	.	+	ATREP10D	Helitron	RC	136	short	1295	high	2949290	chromoarm	1609	no-CHH	no-CHH	.	.	.	.	.
Chr4	184374	185512	AT4TE00950	.	+	HELITRONY1B	Helitron	RC	1138	short	414	high	2948152	chromoarm	630	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	185512	185957	AT4TE00955	.	-	ATHAT2	HAT	DNA	445	short	19	low	2947707	chromoarm	185	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	187652	187742	AT4TE00960	.	-	ATREP15	Helitron	RC	90	tiny	1003	high	2945922	chromoarm	121	no-CHH	no-CHH	.	.	.	.	.
Chr4	188255	188283	AT4TE00965	.	-	ATCOPIA30	Copia	LTR	28	tiny	33	low	2945381	chromoarm	724	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	190591	190774	AT4TE00975	.	-	ATCOPIA17	Copia	LTR	183	short	16	low	2942890	chromoarm	3060	no-CHH	no-CHH	.	.	.	.	.
Chr4	201257	201431	AT4TE01030	.	+	ATENSPM5	En-Spm	DNA	174	short	111	medium	2932233	chromoarm	993	no-CHH	no-CHH	.	.	.	.	.
Chr4	214481	214764	AT4TE01100	.	+	ATREP5	Helitron	RC	283	short	624	high	2918900	chromoarm	81	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	220200	220365	AT4TE01130	.	+	ATHPOGO	Pogo	DNA	165	short	25	low	2913299	chromoarm	516	no-CHH	no-CHH	.	.	.	.	.
Chr4	272507	272848	AT4TE01410	.	-	ARNOLDY2	MuDR	DNA	341	short	288	high	2860816	chromoarm	628	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	272849	272883	AT4TE01415	.	-	ARNOLDY1	MuDR	DNA	35	tiny	237	high	2860781	chromoarm	969	.	.	.	.	.	.	.
Chr4	274129	274347	AT4TE01420	.	-	ATCOPIA68	Copia	LTR	218	short	43	low	2859317	chromoarm	290	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	297781	297821	AT4TE01550	.	-	BOMZH2	MuDR	DNA	40	tiny	47	low	2835843	chromoarm	779	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr4	297821	298908	AT4TE01555	.	-	BOMZH1	MuDR	DNA	1087	short	28	low	2834756	chromoarm	819	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	304642	305036	AT4TE01580	.	-	ATREP10C	Helitron	RC	394	short	123	medium	2828628	chromoarm	539	no-CHH	no-CHH	.	.	.	.	.
Chr4	311899	312570	AT4TE01620	.	-	ATREP11	Helitron	RC	671	short	841	high	2821094	chromoarm	1601	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	312570	313181	AT4TE01625	.	+	ATHATN7	HAT	DNA	611	short	71	medium	2820483	chromoarm	1223	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	313181	313254	AT4TE01630	.	-	ATREP15	Helitron	RC	73	tiny	1003	high	2820410	chromoarm	1150	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	313254	313300	AT4TE01635	.	-	HELITRONY2	Helitron	RC	46	tiny	198	medium	2820364	chromoarm	1104	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	313300	314268	AT4TE01640	.	-	ATREP3	Helitron	RC	968	short	1439	high	2819396	chromoarm	136	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	314268	314320	AT4TE01645	.	-	ATREP3	Helitron	RC	52	tiny	1439	high	2819344	chromoarm	84	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	314320	314368	AT4TE01650	.	+	ATREP1	Helitron	RC	48	tiny	498	high	2819296	chromoarm	36	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	321104	321815	AT4TE01690	.	+	ATLINEIII	L1	LINE	711	short	196	medium	2811849	chromoarm	311	no-CHH	no-CHH	.	.	.	.	.
Chr4	323532	324011	AT4TE01695	.	+	ATLINE2	L1	LINE	479	short	138	medium	2809653	chromoarm	1282	no-CHH	no-CHH	.	.	.	.	.
Chr4	324011	324905	AT4TE01700	.	+	ATREP10D	Helitron	RC	894	short	1295	high	2808759	chromoarm	388	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	324905	325060	AT4TE01705	.	-	ATREP5	Helitron	RC	155	short	624	high	2808604	chromoarm	233	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	333723	334200	AT4TE01750	.	-	ATHATN3A	HAT	DNA	477	short	20	low	2799464	chromoarm	578	no-CHH	no-CHH	.	.	.	.	.
Chr4	347500	347601	AT4TE01820	.	+	HELITRONY3	Helitron	RC	101	short	1399	high	2786063	chromoarm	543	no-CHH	no-CHH	.	.	.	.	.
Chr4	347601	349008	AT4TE01825	.	+	ATREP3	Helitron	RC	1407	short	1439	high	2784656	chromoarm	291	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	360783	360909	AT4TE01880	.	-	ATHPOGO	Pogo	DNA	126	short	25	low	2772755	chromoarm	915	no-CHH	no-CHH	.	.	.	.	.
Chr4	364859	365332	AT4TE01900	.	-	ATREP11	Helitron	RC	473	short	841	high	2768332	chromoarm	123	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	370249	372430	AT4TE01930	.	-	ATREP3	Helitron	RC	2181	medium	1439	high	2761234	chromoarm	1624	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	371492	371745	AT4TE01935	.	-	ATREP3	Helitron	RC	253	short	1439	high	2761919	chromoarm	2309	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	372430	373470	AT4TE01940	.	+	ATREP10D	Helitron	RC	1040	short	1295	high	2760194	chromoarm	584	no-CHH	no-CHH	.	.	.	.	.
Chr4	375723	376002	AT4TE01950	.	+	VANDAL21	MuDR	DNA	280	short	64	medium	2757662	chromoarm	372	.	.	.	.	.	.	.
Chr4	376002	376409	AT4TE01955	.	-	BRODYAGA1A	MuDR	DNA	407	short	586	high	2757255	chromoarm	652	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	376597	377216	AT4TE01960	.	-	ATHPOGON1	Pogo	DNA	619	short	174	medium	2756448	chromoarm	1247	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	377216	377306	AT4TE01965	.	-	ATREP15	Helitron	RC	90	tiny	1003	high	2756358	chromoarm	1866	no-CHH	no-CHH	.	.	.	.	.
Chr4	379388	379592	AT4TE01975	.	+	ATIS112A	Harbinger	DNA	204	short	173	medium	2754072	chromoarm	378	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	381800	381996	AT4TE01985	.	+	VANDAL1	MuDR	DNA	196	short	80	medium	2751668	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	404652	404822	AT4TE02100	.	-	ATENSPM9	En-Spm	DNA	170	short	97	medium	2728842	chromoarm	448	no-CHH	no-CHH	.	.	.	.	.
Chr4	410105	410200	AT4TE02130	.	+	RathE3_cons	.	RathE3_cons	95	tiny	104	medium	2723464	chromoarm	2017	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	411695	412084	AT4TE02135	.	-	HELITRONY3	Helitron	RC	389	short	1399	high	2721580	chromoarm	133	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	413014	413151	AT4TE02140	.	+	ATLINE1_3A	L1	LINE	137	short	160	medium	2720513	chromoarm	38	no-CHH	no-RdDM	.	.	.	.	.
Chr4	415484	415519	AT4TE02150	.	+	ATMUNX1	MuDR	DNA	35	tiny	155	medium	2718145	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	415519	415848	AT4TE02155	.	+	ATMUNX1	MuDR	DNA	329	short	155	medium	2717816	chromoarm	0	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	416953	417304	AT4TE02160	.	-	HELITRONY1B	Helitron	RC	351	short	414	high	2716360	chromoarm	773	no-CHH	no-CHH	.	.	.	.	.
Chr4	417304	418414	AT4TE02165	.	-	ATREP10D	Helitron	RC	1110	short	1295	high	2715250	chromoarm	22	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	425197	425452	AT4TE02200	.	-	ATHATN9	HAT	DNA	256	short	12	low	2708212	chromoarm	616	.	.	.	.	.	.	.
Chr4	433909	434258	AT4TE02250	.	-	HELITRON4	Helitron	RC	349	short	199	medium	2699406	chromoarm	182	no-CHH	no-CHH	.	.	.	.	.
Chr4	438240	438350	AT4TE02270	.	+	ATLINE1A	L1	LINE	111	short	289	high	2695314	chromoarm	735	.	.	.	.	.	.	.
Chr4	451490	451792	AT4TE02340	.	+	VANDAL17	MuDR	DNA	302	short	178	medium	2681872	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	459023	459188	AT4TE02380	.	+	ATCOPIA3	Copia	LTR	165	short	8	low	2674476	chromoarm	848	no-CHH	no-CHH	.	.	.	.	.
Chr4	463386	463850	AT4TE02400	.	-	ATREP6	Helitron	RC	464	short	181	medium	2669814	chromoarm	86	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	463850	464066	AT4TE02405	.	-	HELITRONY1D	Helitron	RC	216	short	756	high	2669598	chromoarm	550	no-CHH	no-CHH	.	.	.	.	.
Chr4	464067	464811	AT4TE02410	.	+	ATHPOGON3	Pogo	DNA	745	short	118	medium	2668853	chromoarm	766	.	.	.	.	.	.	.
Chr4	464811	465032	AT4TE02415	.	-	HELITRONY3	Helitron	RC	221	short	1399	high	2668632	chromoarm	1511	no-CHH	no-CHH	.	.	.	.	.
Chr4	468704	468741	AT4TE02425	.	+	ATREP5	Helitron	RC	37	tiny	624	high	2664923	chromoarm	429	no-CHH	no-CHH	.	.	.	.	.
Chr4	468742	468996	AT4TE02430	.	+	DT1	Mariner	DNA	255	short	123	medium	2664668	chromoarm	466	.	.	.	.	.	.	.
Chr4	468999	469173	AT4TE02435	.	+	ATREP6	Helitron	RC	174	short	181	medium	2664491	chromoarm	724	no-CHH	no-CHH	.	.	.	.	.
Chr4	473913	474244	AT4TE02460	.	-	ATREP4	Helitron	RC	331	short	832	high	2659420	chromoarm	665	no-CHH	no-CHH	.	.	.	.	.
Chr4	474244	474382	AT4TE02465	.	-	ATHATN2	HAT	DNA	138	short	46	low	2659282	chromoarm	996	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	474382	475199	AT4TE02470	.	+	ATREP10D	Helitron	RC	817	short	1295	high	2658465	chromoarm	1134	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	475199	475280	AT4TE02475	.	+	ATREP10D	Helitron	RC	81	tiny	1295	high	2658384	chromoarm	1951	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	486191	486642	AT4TE02530	.	-	ATHATN1	HAT	DNA	451	short	69	medium	2647022	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	488164	488297	AT4TE02535	.	-	HELITRONY3	Helitron	RC	133	short	1399	high	2645367	chromoarm	157	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	488297	488366	AT4TE02540	.	+	ATREP3	Helitron	RC	69	tiny	1439	high	2645298	chromoarm	290	no-CHH	no-CHH	.	.	.	.	.
Chr4	488366	489298	AT4TE02545	.	-	HELITRONY2	Helitron	RC	932	short	198	medium	2644366	chromoarm	359	no-CHH	no-CHH	.	.	.	.	.
Chr4	489298	489323	AT4TE02550	.	-	HELITRONY3	Helitron	RC	25	tiny	1399	high	2644341	chromoarm	1291	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr4	489356	489454	AT4TE02555	.	+	ATREP15	Helitron	RC	98	tiny	1003	high	2644210	chromoarm	1349	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	496998	497145	AT4TE02590	.	+	ATREP5	Helitron	RC	147	short	624	high	2636519	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	497145	498520	AT4TE02595	.	+	ATREP10D	Helitron	RC	1375	short	1295	high	2635144	chromoarm	139	no-CHH	no-CHH	.	.	.	.	.
Chr4	498520	498549	AT4TE02600	.	+	ATREP10B	Helitron	RC	29	tiny	491	high	2635115	chromoarm	947	no-CHH	no-CHH	.	.	.	.	.
Chr4	498549	498725	AT4TE02605	.	+	ATREP3	Helitron	RC	176	short	1439	high	2634939	chromoarm	771	no-CHH	no-CHH	.	.	.	.	.
Chr4	520821	520845	AT4TE02720	.	+	BRODYAGA2	MuDR	DNA	24	tiny	525	high	2612819	chromoarm	0	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr4	520845	520927	AT4TE02725	.	-	ATREP19	.	DNA	82	tiny	189	medium	2612737	chromoarm	0	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr4	520928	521766	AT4TE02730	.	-	ATREP10D	Helitron	RC	839	short	1295	high	2611898	chromoarm	0	.	.	.	.	.	.	.
Chr4	521766	522390	AT4TE02735	.	+	HELITRONY3	Helitron	RC	624	short	1399	high	2611274	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	525704	525738	AT4TE02745	.	-	ATREP3	Helitron	RC	34	tiny	1439	high	2607926	chromoarm	1575	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	525739	526292	AT4TE02750	.	-	ATREP15	Helitron	RC	554	short	1003	high	2607372	chromoarm	1298	.	.	.	.	.	.	.
Chr4	554020	554347	AT4TE02900	.	+	DT1	Mariner	DNA	327	short	123	medium	2579317	chromoarm	109	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	555379	555742	AT4TE02905	.	-	TSCL	.	LINE?	363	short	81	medium	2577922	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	558391	558432	AT4TE02915	.	+	ATREP3	Helitron	RC	41	tiny	1439	high	2575232	chromoarm	1430	no-CHH	no-CHH	.	.	.	.	.
Chr4	558432	559338	AT4TE02920	.	-	ATREP5	Helitron	RC	906	short	624	high	2574326	chromoarm	1001	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	559338	559603	AT4TE02925	.	+	HELITRONY1E	Helitron	RC	265	short	447	high	2574061	chromoarm	736	no-CHH	no-CHH	.	.	.	.	.
Chr4	559603	559652	AT4TE02930	.	+	ATREP3	Helitron	RC	49	tiny	1439	high	2574012	chromoarm	687	no-CHH	no-CHH	.	.	.	.	.
Chr4	563277	563369	AT4TE02940	.	+	ATREP6	Helitron	RC	92	tiny	181	medium	2570295	chromoarm	979	no-CHH	no-CHH	.	.	.	.	.
Chr4	563369	564437	AT4TE02945	.	-	ATREP4	Helitron	RC	1068	short	832	high	2569227	chromoarm	709	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	564437	564569	AT4TE02950	.	+	ATREP15	Helitron	RC	132	short	1003	high	2569095	chromoarm	577	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	571608	571979	AT4TE02990	.	-	ATREP11	Helitron	RC	371	short	841	high	2561685	chromoarm	13	no-CHH	no-CHH	.	.	.	.	.
Chr4	571979	573028	AT4TE02995	.	+	VANDAL8	MuDR	DNA	1049	short	123	medium	2560636	chromoarm	69	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	582268	582438	AT4TE03040	.	-	TAG2	HAT	DNA	170	short	86	medium	2551226	chromoarm	750	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	583498	583741	AT4TE03045	.	-	RathE3_cons	.	RathE3_cons	244	short	104	medium	2549923	chromoarm	1965	.	.	.	.	.	.	.
Chr4	588881	588967	AT4TE03070	.	+	ATREP11	Helitron	RC	86	tiny	841	high	2544697	chromoarm	1035	no-CHH	no-CHH	.	.	.	.	.
Chr4	588967	589231	AT4TE03075	.	+	ATREP10D	Helitron	RC	264	short	1295	high	2544433	chromoarm	1121	no-CHH	no-CHH	.	.	.	.	.
Chr4	589231	590969	AT4TE03080	.	-	ATREP11	Helitron	RC	1738	short	841	high	2542695	chromoarm	1385	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	590969	591118	AT4TE03085	.	-	ATREP3	Helitron	RC	149	short	1439	high	2542546	chromoarm	3123	no-RdDM	no-CHH	.	.	.	.	.
Chr4	591118	591182	AT4TE03090	.	-	HELITRONY1D	Helitron	RC	64	tiny	756	high	2542482	chromoarm	3272	no-CHH	no-CHH	.	.	.	.	.
Chr4	591182	591672	AT4TE03095	.	-	ATREP10C	Helitron	RC	490	short	123	medium	2541992	chromoarm	3336	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	591677	591905	AT4TE03100	.	+	ATMU1	MuDR	DNA	229	short	59	medium	2541759	chromoarm	3830	.	.	.	.	.	.	.
Chr4	592768	592987	AT4TE03105	.	+	ATMU1	MuDR	DNA	220	short	59	medium	2540677	chromoarm	3543	.	.	.	.	.	.	.
Chr4	593746	595309	AT4TE03110	.	-	ATREP10D	Helitron	RC	1563	short	1295	high	2538355	chromoarm	1221	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	600476	600648	AT4TE03140	.	-	ATLINEIII	L1	LINE	172	short	196	medium	2533016	chromoarm	1964	no-CHH	no-CHH	.	.	.	.	.
Chr4	601675	601980	AT4TE03145	.	-	ATLINEIII	L1	LINE	305	short	196	medium	2531684	chromoarm	3163	no-CHH	no-CHH	.	.	.	.	.
Chr4	601981	602176	AT4TE03150	.	+	RathE1_cons	.	RathE1_cons	196	short	213	high	2531488	chromoarm	3468	.	.	.	.	.	.	.
Chr4	604397	604685	AT4TE03160	.	-	ATHATN3	HAT	DNA	288	short	70	medium	2528979	chromoarm	3900	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	604685	604727	AT4TE03165	.	-	ATHATN3	HAT	DNA	42	tiny	70	medium	2528937	chromoarm	3858	no-CHH	RDR6-RdDM	.	.	.	.	.
Chr4	608026	608454	AT4TE03175	.	-	BRODYAGA1A	MuDR	DNA	428	short	586	high	2525210	chromoarm	131	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	613552	613743	AT4TE03200	.	-	HELITRONY1A	Helitron	RC	191	short	271	high	2519921	chromoarm	3065	no-CHH	no-CHH	.	.	.	.	.
Chr4	613743	614129	AT4TE03205	.	+	ATREP5	Helitron	RC	386	short	624	high	2519535	chromoarm	3256	no-CHH	no-CHH	.	.	.	.	.
Chr4	614129	614157	AT4TE03210	.	-	HELITRONY1A	Helitron	RC	28	tiny	271	high	2519507	chromoarm	3642	no-CHH	no-CHH	.	.	.	.	.
Chr4	615219	615452	AT4TE03215	.	+	ATTIRTA1	Tc1	DNA	233	short	95	medium	2518212	chromoarm	4732	no-CHH	no-CHH	.	.	.	.	.
Chr4	617170	617774	AT4TE03220	.	-	ATREP10D	Helitron	RC	604	short	1295	high	2515890	chromoarm	3559	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	617774	618487	AT4TE03225	.	-	ATHPOGON3	Pogo	DNA	713	short	118	medium	2515177	chromoarm	2846	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	618487	618843	AT4TE03230	.	+	ATREP3	Helitron	RC	356	short	1439	high	2514821	chromoarm	2490	no-CHH	no-CHH	.	.	.	.	.
Chr4	618843	619461	AT4TE03235	.	+	ATREP10D	Helitron	RC	618	short	1295	high	2514203	chromoarm	1872	no-CHH	no-CHH	.	.	.	.	.
Chr4	628237	628267	AT4TE03280	.	-	BRODYAGA1	MuDR	DNA	30	tiny	251	high	2505397	chromoarm	479	no-CHH	no-CHH	.	.	.	.	.
Chr4	628267	628604	AT4TE03285	.	-	BRODYAGA1A	MuDR	DNA	337	short	586	high	2505060	chromoarm	509	no-CHH	no-CHH	.	.	.	.	.
Chr4	631180	636931	AT4TE03295	.	+	ATLINE1_6	L1	LINE	5751	long	129	medium	2496733	chromoarm	2859	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	637281	637314	AT4TE03300	.	+	ATREP15	Helitron	RC	33	tiny	1003	high	2496350	chromoarm	2476	no-CHH	no-CHH	.	.	.	.	.
Chr4	637314	638757	AT4TE03305	.	-	HELITRONY3	Helitron	RC	1443	short	1399	high	2494907	chromoarm	1033	no-CHH	no-CHH	.	.	.	.	.
Chr4	638757	638952	AT4TE03310	.	-	ATREP3	Helitron	RC	195	short	1439	high	2494712	chromoarm	838	no-CHH	no-CHH	.	.	.	.	.
Chr4	645875	645970	AT4TE03350	.	+	RathE2_cons	.	RathE2_cons	95	tiny	74	medium	2487694	chromoarm	1685	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	647702	649727	AT4TE03355	.	-	ATLINEIII	L1	LINE	2025	medium	196	medium	2483937	chromoarm	134	no-CHH	no-CHH	.	.	.	.	.
Chr4	649727	649749	AT4TE03360	.	-	ATLINEIII	L1	LINE	22	tiny	196	medium	2483915	chromoarm	112	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	650891	650998	AT4TE03365	.	-	HELITRONY1D	Helitron	RC	107	short	756	high	2482666	chromoarm	934	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	652556	652780	AT4TE03370	.	+	HELITRONY1D	Helitron	RC	224	short	756	high	2480884	chromoarm	2599	no-CHH	no-CHH	.	.	.	.	.
Chr4	654045	654610	AT4TE03375	.	-	ATREP3	Helitron	RC	565	short	1439	high	2479054	chromoarm	1796	no-CHH	no-CHH	.	.	.	.	.
Chr4	654610	655174	AT4TE03380	.	-	ATREP10B	Helitron	RC	564	short	491	high	2478490	chromoarm	1232	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	660809	661698	AT4TE03410	.	+	SADHU	.	Unassigned	889	short	16	low	2471966	chromoarm	1631	no-CHH	no-CHH	ExpressedAndAnnotated	660833,660833	661723,661829	+,+	transcript_id-"379bb430-6ffd-4180-973c-98c44029c52b|82",transcript_id-"ab46b73f-186f-48af-813e-8448dde216fc|5"
Chr4	661672	661840	AT4TE03415	.	-	ATREP4	Helitron	RC	168	short	832	high	2471824	chromoarm	2494	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	661840	662975	AT4TE03420	.	+	HELITRONY1C	Helitron	RC	1135	short	120	medium	2470689	chromoarm	2662	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	663944	664011	AT4TE03425	.	+	ATLINE1A	L1	LINE	67	tiny	289	high	2469653	chromoarm	4766	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	664011	665069	AT4TE03430	.	+	ATLINE1A	L1	LINE	1058	short	289	high	2468595	chromoarm	4269	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	667500	668117	AT4TE03440	.	-	ATGP8	Gypsy	LTR	617	short	92	medium	2465547	chromoarm	1221	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	672673	672769	AT4TE03460	.	-	ATDNAI27T9C	MuDR	DNA	96	tiny	108	medium	2460895	chromoarm	44	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	682953	682987	AT4TE03520	.	-	HELITRONY1A	Helitron	RC	34	tiny	271	high	2450677	chromoarm	479	no-CHH	no-CHH	.	.	.	.	.
Chr4	682987	683044	AT4TE03525	.	+	ATREP10D	Helitron	RC	57	tiny	1295	high	2450620	chromoarm	513	no-CHH	no-CHH	.	.	.	.	.
Chr4	683044	685680	AT4TE03530	.	+	ATREP3	Helitron	RC	2636	medium	1439	high	2447984	chromoarm	110	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	690519	690767	AT4TE03560	.	+	ATIS112A	Harbinger	DNA	248	short	173	medium	2442897	chromoarm	212	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	692089	692257	AT4TE03565	.	+	ATIS112A	Harbinger	DNA	168	short	173	medium	2441407	chromoarm	181	no-CHH	no-CHH	.	.	.	.	.
Chr4	692490	692732	AT4TE03570	.	+	ATHATN3	HAT	DNA	242	short	70	medium	2440932	chromoarm	477	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	697318	697570	AT4TE03590	.	-	ATSINE4	.	SINE	252	short	98	medium	2436094	chromoarm	381	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	697583	698822	AT4TE03595	.	-	BRODYAGA2	MuDR	DNA	1239	short	525	high	2434842	chromoarm	646	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	698823	698869	AT4TE03600	.	+	ATREP5	Helitron	RC	46	tiny	624	high	2434795	chromoarm	1783	no-CHH	no-CHH	.	.	.	.	.
Chr4	705937	706627	AT4TE03640	.	+	ATREP11	Helitron	RC	690	short	841	high	2427037	chromoarm	71	no-CHH	no-CHH	.	.	.	.	.
Chr4	712858	712972	AT4TE03670	.	-	ATHATN3	HAT	DNA	114	short	70	medium	2420692	chromoarm	243	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	724151	724862	AT4TE03730	.	-	ATREP15	Helitron	RC	711	short	1003	high	2408802	chromoarm	5066	no-CHH	no-CHH	.	.	.	.	.
Chr4	724862	726596	AT4TE03735	.	-	ATREP10D	Helitron	RC	1734	short	1295	high	2407068	chromoarm	3332	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	728325	728533	AT4TE03740	.	+	RathE2_cons	.	RathE2_cons	208	short	74	medium	2405131	chromoarm	1395	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	735417	735568	AT4TE03780	.	+	ATSINE2A	.	SINE	151	short	33	low	2398096	chromoarm	207	no-CHH	no-CHH	.	.	.	.	.
Chr4	736941	737127	AT4TE03785	.	-	ATTIRX1C	.	DNA	186	short	39	low	2396537	chromoarm	491	no-CHH	no-CHH	.	.	.	.	.
Chr4	738416	738650	AT4TE03790	.	+	ATHATN1	HAT	DNA	234	short	69	medium	2395014	chromoarm	1966	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	741042	741482	AT4TE03800	.	-	HELITRON4	Helitron	RC	440	short	199	medium	2392182	chromoarm	3466	no-CHH	no-CHH	.	.	.	.	.
Chr4	741756	742357	AT4TE03805	.	+	ATMUN1	MuDR	DNA	601	short	107	medium	2391307	chromoarm	2591	no-CHH	no-CHH	.	.	.	.	.
Chr4	742357	742428	AT4TE03810	.	-	ATDNA2T9C	MuDR	DNA	71	tiny	242	high	2391236	chromoarm	2520	no-CHH	no-CHH	.	.	.	.	.
Chr4	743215	743955	AT4TE03815	.	-	BRODYAGA2	MuDR	DNA	740	short	525	high	2389709	chromoarm	993	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	761407	762270	AT4TE03900	.	+	ATIS112A	Harbinger	DNA	863	short	173	medium	2371394	chromoarm	273	no-CHH	no-CHH	ExpressedAndAnnotated	761560,761568	762590,762545	+,+	transcript_id-"3d73f50f-3bcc-4615-b8cf-1ad552bc6227|4",transcript_id-"df3bdeec-7c35-4191-8408-8761f08211a8|19"
Chr4	762270	762430	AT4TE03905	.	+	ATENSPM2	En-Spm	DNA	160	short	114	medium	2371234	chromoarm	1136	no-CHH	no-CHH	ExpressedAndAnnotated	761560,761568	762590,762545	+,+	transcript_id-"3d73f50f-3bcc-4615-b8cf-1ad552bc6227|4",transcript_id-"df3bdeec-7c35-4191-8408-8761f08211a8|19"
Chr4	762669	762802	AT4TE03910	.	+	ATIS112A	Harbinger	DNA	133	short	173	medium	2370862	chromoarm	1535	no-CHH	no-CHH	.	.	.	.	.
Chr4	762922	763514	AT4TE03915	.	+	HELITRONY3	Helitron	RC	592	short	1399	high	2370150	chromoarm	1049	no-CHH	no-CHH	.	.	.	.	.
Chr4	763514	764448	AT4TE03920	.	-	ATREP10B	Helitron	RC	934	short	491	high	2369216	chromoarm	115	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	764448	764532	AT4TE03925	.	+	ATREP15	Helitron	RC	84	tiny	1003	high	2369132	chromoarm	31	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	764532	764599	AT4TE03930	.	+	HELITRONY3	Helitron	RC	67	tiny	1399	high	2369065	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	791703	793045	AT4TE04080	.	-	ATREP11	Helitron	RC	1342	short	841	high	2340619	chromoarm	357	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	793045	793141	AT4TE04085	.	-	ATREP11	Helitron	RC	96	tiny	841	high	2340523	chromoarm	261	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	793141	793366	AT4TE04090	.	-	ATREP10D	Helitron	RC	225	short	1295	high	2340298	chromoarm	36	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	795198	795268	AT4TE04095	.	-	RathE1_cons	.	RathE1_cons	71	tiny	213	high	2338396	chromoarm	264	.	.	.	.	.	.	.
Chr4	798572	799230	AT4TE04105	.	-	ATREP1	Helitron	RC	658	short	498	high	2334434	chromoarm	1093	no-CHH	no-CHH	.	.	.	.	.
Chr4	818596	818947	AT4TE04200	.	-	ATLINE2	L1	LINE	351	short	138	medium	2314717	chromoarm	168	no-CHH	no-CHH	.	.	.	.	.
Chr4	823506	824051	AT4TE04220	.	-	ATREP2	Helitron	RC	545	short	164	medium	2309613	chromoarm	212	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	831204	831390	AT4TE04260	.	-	ATREP4	Helitron	RC	186	short	832	high	2302274	chromoarm	125	no-CHH	no-CHH	.	.	.	.	.
Chr4	831390	832388	AT4TE04265	.	+	ATREP1	Helitron	RC	998	short	498	high	2301276	chromoarm	311	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	835968	836019	AT4TE04275	.	+	ATTIR16T3A	.	DNA	51	tiny	106	medium	2297645	chromoarm	1666	PolIV-and-RDR6-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	836019	836211	AT4TE04280	.	-	ATTIR16T3A	.	DNA	192	short	106	medium	2297453	chromoarm	1717	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	850521	850663	AT4TE04360	.	+	ATLINE1A	L1	LINE	142	short	289	high	2283001	chromoarm	723	no-CHH	no-CHH	.	.	.	.	.
Chr4	860200	860652	AT4TE04410	.	-	ATMU1	MuDR	DNA	452	short	59	medium	2273012	chromoarm	3247	no-CHH	no-CHH	.	.	.	.	.
Chr4	860920	864078	AT4TE04415	.	-	ATIS112A	Harbinger	DNA	3158	medium	173	medium	2269586	chromoarm	2308	PolIV-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	863493	863185	-	transcript_id-"61ca64ef-7e6b-4e2e-8ea7-cb4ad06e3482|3"
Chr4	866411	867043	AT4TE04425	.	-	ATGP1	Gypsy	LTR	632	short	144	medium	2266621	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	867787	868042	AT4TE04430	.	-	ATGP1	Gypsy	LTR	255	short	144	medium	2265622	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	868690	869627	AT4TE04435	.	+	ARNOLDY2	MuDR	DNA	937	short	288	high	2264037	chromoarm	564	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	869904	870075	AT4TE04440	.	+	VANDAL22	MuDR	DNA	171	short	48	low	2263589	chromoarm	1192	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	876405	876641	AT4TE04470	.	-	ATLINE1A	L1	LINE	236	short	289	high	2257023	chromoarm	502	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	880156	880372	AT4TE04480	.	+	HELITRON2	Helitron	RC	216	short	194	medium	2253292	chromoarm	1084	no-CHH	no-CHH	.	.	.	.	.
Chr4	914507	914599	AT4TE04660	.	+	ATLINE1A	L1	LINE	92	tiny	289	high	2219065	chromoarm	0	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	915366	915456	AT4TE04665	.	-	ATCOPIA20	Copia	LTR	90	tiny	6	low	2218208	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	916529	916554	AT4TE04670	.	+	HELITRONY1E	Helitron	RC	25	tiny	447	high	2217110	chromoarm	115	no-CHH	no-CHH	.	.	.	.	.
Chr4	916554	917632	AT4TE04675	.	-	ATREP3	Helitron	RC	1078	short	1439	high	2216032	chromoarm	140	no-CHH	no-CHH	.	.	.	.	.
Chr4	917632	917933	AT4TE04680	.	+	HELITRONY3	Helitron	RC	301	short	1399	high	2215731	chromoarm	1218	no-CHH	no-CHH	.	.	.	.	.
Chr4	919641	921128	AT4TE04685	.	-	ATREP15	Helitron	RC	1487	short	1003	high	2212536	chromoarm	425	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	921128	921214	AT4TE04690	.	+	ATREP11	Helitron	RC	86	tiny	841	high	2212450	chromoarm	339	no-CHH	no-CHH	.	.	.	.	.
Chr4	921214	921309	AT4TE04695	.	+	ATREP4	Helitron	RC	95	tiny	832	high	2212355	chromoarm	244	no-CHH	no-CHH	.	.	.	.	.
Chr4	925172	925629	AT4TE04710	.	-	BRODYAGA2	MuDR	DNA	457	short	525	high	2208035	chromoarm	1442	no-CHH	no-CHH	.	.	.	.	.
Chr4	927152	927453	AT4TE04715	.	-	META1	Copia	LTR	301	short	138	medium	2206211	chromoarm	2774	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	929456	929726	AT4TE04725	.	-	ATLINE1A	L1	LINE	270	short	289	high	2203938	chromoarm	501	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	940312	940714	AT4TE04780	.	-	HELITRON1	Helitron	RC	402	short	130	medium	2192950	chromoarm	121	no-CHH	no-CHH	.	.	.	.	.
Chr4	954223	954479	AT4TE04850	.	+	ATREP16	MuDR	DNA	256	short	47	low	2179185	chromoarm	621	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	957238	957949	AT4TE04860	.	-	ATREP5	Helitron	RC	711	short	624	high	2175715	chromoarm	176	no-CHH	no-CHH	.	.	.	.	.
Chr4	963528	963579	AT4TE04890	.	-	ATREP11	Helitron	RC	51	tiny	841	high	2170085	chromoarm	11	no-CHH	no-CHH	.	.	.	.	.
Chr4	963579	964423	AT4TE04895	.	-	ATREP2A	Helitron	RC	844	short	116	medium	2169241	chromoarm	62	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	964424	964480	AT4TE04900	.	-	ATREP3	Helitron	RC	57	tiny	1439	high	2169184	chromoarm	906	.	.	.	.	.	.	.
Chr4	964480	965805	AT4TE04905	.	-	ATREP3	Helitron	RC	1325	short	1439	high	2167859	chromoarm	963	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	965824	965934	AT4TE04910	.	-	ATREP15	Helitron	RC	110	short	1003	high	2167730	chromoarm	1437	no-CHH	no-CHH	.	.	.	.	.
Chr4	966415	966475	AT4TE04915	.	+	RathE1_cons	.	RathE1_cons	60	tiny	213	high	2167189	chromoarm	896	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	984499	984520	AT4TE05010	.	-	HELITRONY3	Helitron	RC	21	tiny	1399	high	2149144	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	984520	984645	AT4TE05015	.	-	ATREP10B	Helitron	RC	125	short	491	high	2149019	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	984645	985106	AT4TE05020	.	+	ATREP5	Helitron	RC	461	short	624	high	2148558	chromoarm	122	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	985710	985802	AT4TE05025	.	+	ATCOPIA59	Copia	LTR	92	tiny	20	low	2147862	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	999818	999907	AT4TE05100	.	-	ATREP4	Helitron	RC	89	tiny	832	high	2133757	chromoarm	1099	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr4	999916	1002008	AT4TE05105	.	-	ATREP3	Helitron	RC	2092	medium	1439	high	2131656	chromoarm	645	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	1002008	1002295	AT4TE05110	.	-	ATREP3	Helitron	RC	287	short	1439	high	2131369	chromoarm	358	no-CHH	no-CHH	.	.	.	.	.
Chr4	1002295	1002343	AT4TE05115	.	+	HELITRONY1A	Helitron	RC	48	tiny	271	high	2131321	chromoarm	310	no-CHH	no-CHH	.	.	.	.	.
Chr4	1007001	1007157	AT4TE05140	.	+	RathE1_cons	.	RathE1_cons	156	short	213	high	2126507	chromoarm	1876	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	1010062	1010109	AT4TE05150	.	+	HELITRONY1E	Helitron	RC	47	tiny	447	high	2123555	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	1010109	1011398	AT4TE05155	.	+	ATREP11	Helitron	RC	1289	short	841	high	2122266	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	1011398	1011592	AT4TE05160	.	+	ATREP3	Helitron	RC	194	short	1439	high	2122072	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	1011592	1012276	AT4TE05165	.	+	HELITRONY1D	Helitron	RC	684	short	756	high	2121388	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	1014166	1014229	AT4TE05175	.	+	ATREP4	Helitron	RC	63	tiny	832	high	2119435	chromoarm	450	no-CHH	no-CHH	.	.	.	.	.
Chr4	1014229	1014721	AT4TE05180	.	+	HELITRONY1B	Helitron	RC	492	short	414	high	2118943	chromoarm	0	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	1015896	1016512	AT4TE05185	.	-	TNAT1A	.	DNA	616	short	162	medium	2117152	chromoarm	167	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	1016802	1021368	AT4TE05190	.	+	ATENSPM1	En-Spm	DNA	4566	medium	30	low	2112296	chromoarm	1073	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	1017805,1017809,1019757,1020752	1020954,1020969,1020911,1020917	+,+,+,+	transcript_id-"f1e4311e-ee6b-45b4-babf-c3880357aeb5|10",transcript_id-"878c4add-a410-4666-a7e8-8dc9696cb9fd|3",transcript_id-"b3317031-a71d-4fb9-a433-e1901eea4892|3",transcript_id-"1ee5308d-1871-46fc-89a0-bb50f8e8a88d|10"
Chr4	1023826	1024282	AT4TE05200	.	-	ATMU3N1	MuDR	DNA	457	short	19	low	2109382	chromoarm	0	.	.	.	.	.	.	.
Chr4	1026486	1026997	AT4TE05210	.	+	ATHPOGON1	Pogo	DNA	511	short	174	medium	2106667	chromoarm	368	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	1029798	1030386	AT4TE05220	.	-	HELITRONY3	Helitron	RC	588	short	1399	high	2103278	chromoarm	18	no-CHH	no-CHH	.	.	.	.	.
Chr4	1033530	1033585	AT4TE05230	.	-	ATREP4	Helitron	RC	55	tiny	832	high	2100079	chromoarm	0	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	1033585	1033976	AT4TE05235	.	+	ARNOLDY2	MuDR	DNA	391	short	288	high	2099688	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	1033976	1034087	AT4TE05240	.	+	AT9TSD1	MuDR	DNA	111	short	55	medium	2099577	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	1034904	1034932	AT4TE05245	.	-	ATREP3	Helitron	RC	28	tiny	1439	high	2098732	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	1034932	1034956	AT4TE05250	.	+	ATREP4	Helitron	RC	24	tiny	832	high	2098708	chromoarm	4	no-CHH	no-CHH	.	.	.	.	.
Chr4	1034956	1035683	AT4TE05255	.	-	BRODYAGA2	MuDR	DNA	727	short	525	high	2097981	chromoarm	28	no-CHH	no-CHH	.	.	.	.	.
Chr4	1047101	1047123	AT4TE05310	.	-	ATREP3	Helitron	RC	22	tiny	1439	high	2086541	chromoarm	294	no-CHH	no-CHH	.	.	.	.	.
Chr4	1047123	1047705	AT4TE05315	.	-	ATREP4	Helitron	RC	582	short	832	high	2085959	chromoarm	316	no-CHH	no-CHH	.	.	.	.	.
Chr4	1047705	1047926	AT4TE05320	.	-	HELITRONY1E	Helitron	RC	221	short	447	high	2085738	chromoarm	898	no-CHH	no-CHH	.	.	.	.	.
Chr4	1063406	1063610	AT4TE05400	.	-	ATIS112A	Harbinger	DNA	204	short	173	medium	2070054	chromoarm	752	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	1088876	1089644	AT4TE05540	.	+	ATREP5	Helitron	RC	768	short	624	high	2044020	chromoarm	196	no-CHH	DCL3-RdDM	.	.	.	.	.
Chr4	1090721	1090973	AT4TE05545	.	+	ATDNAI27T9A	MuDR	DNA	252	short	116	medium	2042691	chromoarm	1028	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	1091112	1091942	AT4TE05550	.	+	LIMPET1	MuDR	DNA	830	short	116	medium	2041722	chromoarm	59	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	1094791	1095217	AT4TE05560	.	-	ATCOPIA38B	Copia	LTR	426	short	5	low	2038447	chromoarm	354	no-CHH	no-CHH	.	.	.	.	.
Chr4	1095220	1095303	AT4TE05565	.	+	ATREP11	Helitron	RC	83	tiny	841	high	2038361	chromoarm	783	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	1095303	1097443	AT4TE05570	.	+	HELITRONY3	Helitron	RC	2140	medium	1399	high	2036221	chromoarm	88	no-RdDM	no-CHH	.	.	.	.	.
Chr4	1097973	1098049	AT4TE05575	.	-	ATLINEIII	L1	LINE	76	tiny	196	medium	2035615	chromoarm	328	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	1098644	1099991	AT4TE05580	.	-	ATLINE2	L1	LINE	1347	short	138	medium	2033673	chromoarm	999	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	1100097	1100147	AT4TE05585	.	-	HELITRONY3	Helitron	RC	50	tiny	1399	high	2033517	chromoarm	1490	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	1100147	1101097	AT4TE05590	.	-	ATREP1	Helitron	RC	950	short	498	high	2032567	chromoarm	540	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	1101097	1101278	AT4TE05595	.	+	HELITRONY1E	Helitron	RC	181	short	447	high	2032386	chromoarm	359	no-CHH	no-CHH	.	.	.	.	.
Chr4	1101278	1101373	AT4TE05600	.	+	ATREP10D	Helitron	RC	95	tiny	1295	high	2032291	chromoarm	264	no-CHH	no-CHH	.	.	.	.	.
Chr4	1140508	1141010	AT4TE05810	.	+	HELITRONY2	Helitron	RC	502	short	198	medium	1992654	chromoarm	202	no-CHH	no-CHH	.	.	.	.	.
Chr4	1141749	1141821	AT4TE05815	.	-	HELITRONY3	Helitron	RC	72	tiny	1399	high	1991843	chromoarm	1443	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	1141822	1141843	AT4TE05820	.	-	ARNOLDY1	MuDR	DNA	22	tiny	237	high	1991821	chromoarm	1515	.	.	.	.	.	.	.
Chr4	1141843	1143301	AT4TE05825	.	+	HELITRONY3	Helitron	RC	1458	short	1399	high	1990363	chromoarm	839	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	1143301	1143369	AT4TE05830	.	+	AT9TSD1	MuDR	DNA	68	tiny	55	medium	1990295	chromoarm	771	no-CHH	no-CHH	.	.	.	.	.
Chr4	1153525	1153985	AT4TE05880	.	+	ATREP7	Helitron	RC	460	short	164	medium	1979679	chromoarm	45	no-CHH	no-CHH	.	.	.	.	.
Chr4	1184976	1185087	AT4TE06050	.	-	ATREP4	Helitron	RC	111	short	832	high	1948577	chromoarm	648	no-CHH	no-CHH	.	.	.	.	.
Chr4	1185087	1185687	AT4TE06055	.	-	ATREP1	Helitron	RC	600	short	498	high	1947977	chromoarm	335	no-CHH	no-CHH	.	.	.	.	.
Chr4	1185687	1185721	AT4TE06060	.	-	ATREP4	Helitron	RC	34	tiny	832	high	1947943	chromoarm	301	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	1190060	1190301	AT4TE06080	.	+	ATDNATA1	Mariner	DNA	241	short	28	low	1943363	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	1197730	1198093	AT4TE06120	.	+	HELITRONY1A	Helitron	RC	363	short	271	high	1935571	chromoarm	669	no-CHH	no-CHH	.	.	.	.	.
Chr4	1198207	1198250	AT4TE06125	.	-	HELITRONY1B	Helitron	RC	43	tiny	414	high	1935414	chromoarm	1146	no-CHH	no-CHH	.	.	.	.	.
Chr4	1198250	1199600	AT4TE06130	.	-	ATREP1	Helitron	RC	1350	short	498	high	1934064	chromoarm	1189	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	1199600	1199684	AT4TE06135	.	-	ATREP1	Helitron	RC	84	tiny	498	high	1933980	chromoarm	2485	no-CHH	no-CHH	.	.	.	.	.
Chr4	1199684	1199925	AT4TE06140	.	+	ATREP3	Helitron	RC	241	short	1439	high	1933739	chromoarm	2244	no-CHH	no-CHH	.	.	.	.	.
Chr4	1199925	1200002	AT4TE06145	.	-	ATREP5	Helitron	RC	77	tiny	624	high	1933662	chromoarm	2167	no-CHH	no-CHH	.	.	.	.	.
Chr4	1211887	1212013	AT4TE06200	.	-	ATCOPIA75	Copia	LTR	126	short	20	low	1921651	chromoarm	375	no-CHH	no-CHH	.	.	.	.	.
Chr4	1214814	1214992	AT4TE06210	.	-	ATCOPIA75	Copia	LTR	178	short	20	low	1918672	chromoarm	2763	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	1224821	1224982	AT4TE06260	.	+	ATGP9LTR	Gypsy	LTR	161	short	10	low	1908682	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	1230488	1230713	AT4TE06290	.	+	BRODYAGA2	MuDR	DNA	225	short	525	high	1902951	chromoarm	615	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	1230713	1230734	AT4TE06295	.	-	BRODYAGA2	MuDR	DNA	21	tiny	525	high	1902930	chromoarm	840	no-CHH	no-CHH	.	.	.	.	.
Chr4	1230734	1231738	AT4TE06300	.	+	BRODYAGA2	MuDR	DNA	1004	short	525	high	1901926	chromoarm	861	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	1231270	1231303	AT4TE06305	.	-	BRODYAGA2	MuDR	DNA	34	tiny	525	high	1902361	chromoarm	1396	.	.	.	.	.	.	.
Chr4	1232430	1232828	AT4TE06310	.	-	ATDNA12T3_2	.	DNA	398	short	660	high	1900836	chromoarm	2557	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	1233441	1233635	AT4TE06315	.	-	ATREP3	Helitron	RC	194	short	1439	high	1900029	chromoarm	3568	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	1233640	1234831	AT4TE06320	.	+	BOMZH2	MuDR	DNA	1191	short	47	low	1898833	chromoarm	3049	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	1245643	1246841	AT4TE06380	.	+	ATREP5	Helitron	RC	1198	short	624	high	1886823	chromoarm	574	no-CHH	no-CHH	.	.	.	.	.
Chr4	1246841	1247311	AT4TE06385	.	+	HELITRONY1B	Helitron	RC	470	short	414	high	1886353	chromoarm	104	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	1253729	1254180	AT4TE06410	.	+	HELITRONY1D	Helitron	RC	451	short	756	high	1879484	chromoarm	2072	no-CHH	no-CHH	.	.	.	.	.
Chr4	1253894	1254130	AT4TE06415	.	+	ATMUNX1	MuDR	DNA	236	short	155	medium	1879534	chromoarm	2122	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	1254180	1254883	AT4TE06420	.	+	HELITRONY1D	Helitron	RC	703	short	756	high	1878781	chromoarm	1369	no-CHH	no-CHH	.	.	.	.	.
Chr4	1256796	1256972	AT4TE06430	.	-	VANDAL8	MuDR	DNA	176	short	123	medium	1876692	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	1258107	1258343	AT4TE06435	.	-	SIMPLEHAT1	HAT	DNA	236	short	56	medium	1875321	chromoarm	237	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	1263205	1263289	AT4TE06460	.	-	ATLINE1_3A	L1	LINE	84	tiny	160	medium	1870375	chromoarm	0	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	1270627	1270998	AT4TE06500	.	-	TSCL	.	LINE?	371	short	81	medium	1862666	chromoarm	119	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	1273364	1273953	AT4TE06510	.	-	BRODYAGA2	MuDR	DNA	589	short	525	high	1859711	chromoarm	431	no-CHH	no-CHH	.	.	.	.	.
Chr4	1280333	1280383	AT4TE06540	.	+	HELITRONY3	Helitron	RC	50	tiny	1399	high	1853281	chromoarm	669	no-CHH	no-CHH	.	.	.	.	.
Chr4	1280383	1280404	AT4TE06545	.	+	ATREP5	Helitron	RC	21	tiny	624	high	1853260	chromoarm	719	no-CHH	no-CHH	.	.	.	.	.
Chr4	1280404	1280595	AT4TE06550	.	+	HELITRONY3	Helitron	RC	191	short	1399	high	1853069	chromoarm	740	no-CHH	no-CHH	.	.	.	.	.
Chr4	1280595	1283240	AT4TE06555	.	+	ATREP5	Helitron	RC	2645	medium	624	high	1850424	chromoarm	825	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	1283240	1283634	AT4TE06560	.	+	ATREP5	Helitron	RC	394	short	624	high	1850030	chromoarm	431	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	1287748	1288111	AT4TE06580	.	+	ATREP5	Helitron	RC	363	short	624	high	1845553	chromoarm	1	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	1288153	1288400	AT4TE06585	.	+	ATDNA1T9A	MuDR	DNA	247	short	36	low	1845264	chromoarm	85	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	1291165	1291327	AT4TE06595	.	+	ATIS112A	Harbinger	DNA	162	short	173	medium	1842337	chromoarm	1488	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	1291385	1291750	AT4TE06600	.	-	ATHPOGON1	Pogo	DNA	365	short	174	medium	1841914	chromoarm	1065	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	1299028	1299259	AT4TE06640	.	-	ATHATN4	HAT	DNA	231	short	56	medium	1834405	chromoarm	674	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	1301066	1301634	AT4TE06645	.	+	ATREP15	Helitron	RC	568	short	1003	high	1832030	chromoarm	2712	no-CHH	no-CHH	.	.	.	.	.
Chr4	1301634	1301947	AT4TE06650	.	-	ATREP10B	Helitron	RC	313	short	491	high	1831717	chromoarm	3280	no-CHH	no-CHH	.	.	.	.	.
Chr4	1301947	1302908	AT4TE06655	.	-	ATREP10	Helitron	RC	961	short	63	medium	1830756	chromoarm	3593	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	1302908	1303332	AT4TE06660	.	-	ATREP10B	Helitron	RC	424	short	491	high	1830332	chromoarm	3325	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	1303332	1303492	AT4TE06665	.	-	ATREP10A	Helitron	RC	160	short	279	high	1830172	chromoarm	3165	no-CHH	no-CHH	.	.	.	.	.
Chr4	1304811	1304846	AT4TE06670	.	+	BRODYAGA1A	MuDR	DNA	35	tiny	586	high	1828818	chromoarm	1811	no-CHH	RDR6-RdDM	.	.	.	.	.
Chr4	1304846	1304920	AT4TE06675	.	+	ATREP10D	Helitron	RC	74	tiny	1295	high	1828744	chromoarm	1737	no-CHH	no-CHH	.	.	.	.	.
Chr4	1304920	1308323	AT4TE06680	.	-	ATREP10D	Helitron	RC	3403	medium	1295	high	1825341	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	1306288	1306325	AT4TE06685	.	-	ATREP10B	Helitron	RC	37	tiny	491	high	1827339	chromoarm	332	no-CHH	no-CHH	.	.	.	.	.
Chr4	1312394	1317221	AT4TE06710	.	-	ATCOPIA2	Copia	LTR	4827	medium	6	low	1816443	chromoarm	240	no-RdDM	no-CHH	ExpressedAndAnnotated	1314284	1312386	-	transcript_id-"c61503d4-cf63-4c08-9f75-f6a3b39403e5|4"
Chr4	1339275	1339694	AT4TE06830	.	+	ATDNA2T9C	MuDR	DNA	419	short	242	high	1793970	chromoarm	1388	no-CHH	no-CHH	.	.	.	.	.
Chr4	1341308	1341764	AT4TE06835	.	-	ATCOPIA28	Copia	LTR	456	short	81	medium	1791900	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	1342271	1342860	AT4TE06840	.	-	ATREP15	Helitron	RC	589	short	1003	high	1790804	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	1342860	1342884	AT4TE06845	.	+	ATHPOGO	Pogo	DNA	24	tiny	25	low	1790780	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	1346865	1348246	AT4TE06860	.	+	ATREP3	Helitron	RC	1381	short	1439	high	1785418	chromoarm	738	no-CHH	no-CHH	.	.	.	.	.
Chr4	1347195	1347839	AT4TE06865	.	-	HELITRONY1B	Helitron	RC	644	short	414	high	1785825	chromoarm	1068	no-CHH	no-CHH	.	.	.	.	.
Chr4	1348829	1348899	AT4TE06870	.	-	ATREP6	Helitron	RC	70	tiny	181	medium	1784765	chromoarm	2702	no-CHH	no-CHH	.	.	.	.	.
Chr4	1348899	1349024	AT4TE06875	.	-	ATREP3	Helitron	RC	125	short	1439	high	1784640	chromoarm	2772	no-CHH	no-CHH	.	.	.	.	.
Chr4	1349024	1351883	AT4TE06880	.	+	ATREP3	Helitron	RC	2859	medium	1439	high	1781781	chromoarm	2897	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	1354025	1351752	-	transcript_id-"59a272e7-a4ff-4906-af9f-1bd69f200107|8"
Chr4	1356978	1358427	AT4TE06910	.	+	ATREP10D	Helitron	RC	1449	short	1295	high	1775237	chromoarm	14	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	1365782	1366187	AT4TE06950	.	+	ATTIRX1C	.	DNA	405	short	39	low	1767477	chromoarm	307	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	1366187	1366282	AT4TE06955	.	+	ATREP3	Helitron	RC	95	tiny	1439	high	1767382	chromoarm	212	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	1372859	1373219	AT4TE06990	.	-	ATREP10B	Helitron	RC	360	short	491	high	1760445	chromoarm	1141	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	1379908	1380892	AT4TE07030	.	-	ATREP3	Helitron	RC	984	short	1439	high	1752772	chromoarm	633	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	1380892	1381221	AT4TE07035	.	+	ATLINE1_3A	L1	LINE	329	short	160	medium	1752443	chromoarm	1331	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	1395728	1395953	AT4TE07110	.	-	ATIS112A	Harbinger	DNA	225	short	173	medium	1737711	chromoarm	48	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	1397295	1397548	AT4TE07115	.	-	ATIS112A	Harbinger	DNA	253	short	173	medium	1736116	chromoarm	430	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	1397386,1397374,1397386	1395878,1396401,1396481	-,-,-	transcript_id-"3263fde7-0c04-4146-8214-5b422257e940|4",transcript_id-"fe8ae03b-1aef-4952-a0f0-2dd1452017c4|4",transcript_id-"b5cbcab4-04eb-4270-9252-e87c945a939d|10"
Chr4	1399601	1400315	AT4TE07125	.	-	ATCOPIA74	Copia	LTR	714	short	7	low	1733349	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	1400315	1400345	AT4TE07130	.	-	ATCOPIA56	Copia	LTR	30	tiny	16	low	1733319	chromoarm	24	no-CHH	no-CHH	.	.	.	.	.
Chr4	1434013	1434266	AT4TE07310	.	-	ATTIRTA1	Tc1	DNA	253	short	95	medium	1699398	chromoarm	322	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	1435166	1435292	AT4TE07315	.	+	ATREP1	Helitron	RC	126	short	498	high	1698372	chromoarm	1475	no-CHH	no-CHH	.	.	.	.	.
Chr4	1435292	1436200	AT4TE07320	.	+	ATREP15	Helitron	RC	908	short	1003	high	1697464	chromoarm	1601	no-CHH	no-CHH	.	.	.	.	.
Chr4	1443561	1443828	AT4TE07360	.	+	ATREP4	Helitron	RC	267	short	832	high	1689836	chromoarm	284	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	1443829	1444356	AT4TE07365	.	+	HELITRONY2	Helitron	RC	528	short	198	medium	1689308	chromoarm	315	.	.	.	.	.	.	.
Chr4	1449043	1449612	AT4TE07390	.	-	ATLINE1_1	L1	LINE	569	short	61	medium	1684052	chromoarm	1359	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	1447923	1449119	+	transcript_id-"c815c5d1-8dc8-4794-a8d8-4e3ae657c9b2|12"
Chr4	1449974	1454084	AT4TE07395	.	-	VANDAL2	MuDR	DNA	4110	medium	43	low	1679580	chromoarm	2290	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	1454618	1454830	AT4TE07400	.	-	VANDAL12	MuDR	DNA	212	short	37	low	1678834	chromoarm	6934	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	1454845	1455015	AT4TE07405	.	-	VANDAL11	MuDR	DNA	170	short	18	low	1678649	chromoarm	7161	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	1455151	1458684	AT4TE07410	.	-	VANDAL2	MuDR	DNA	3533	medium	43	low	1674980	chromoarm	5844	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	1456777	1457636	+	transcript_id-"a7be8d7d-8354-4df4-ad23-6a5c1d99af81|5"
Chr4	1458684	1459719	AT4TE07415	.	+	ATENSPM1A	En-Spm	DNA	1035	short	77	medium	1673945	chromoarm	4809	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	1459598	1462103	+	transcript_id-"932ee05b-3ef8-4c0c-a6c4-39fdee9ce1a0|30"
Chr4	1459719	1462422	AT4TE07420	.	+	ATENSPM4	En-Spm	DNA	2703	medium	50	medium	1671242	chromoarm	2106	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	1459598	1462103	+	transcript_id-"932ee05b-3ef8-4c0c-a6c4-39fdee9ce1a0|30"
Chr4	1460550	1460607	AT4TE07425	.	+	ATENSPM4	En-Spm	DNA	57	tiny	50	medium	1673057	chromoarm	3921	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	1461443	1461502	AT4TE07430	.	+	ATENSPM4	En-Spm	DNA	59	tiny	50	medium	1672162	chromoarm	3026	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	1462422	1462468	AT4TE07435	.	+	ATENSPM1	En-Spm	DNA	46	tiny	30	low	1671196	chromoarm	2060	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	1462468	1463389	AT4TE07440	.	-	VANDAL2	MuDR	DNA	921	short	43	low	1670275	chromoarm	1139	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	1480616	1480680	AT4TE07530	.	+	ATREP15	Helitron	RC	65	tiny	1003	high	1652984	chromoarm	1650	.	.	.	.	.	.	.
Chr4	1480680	1481576	AT4TE07535	.	+	HELITRONY1A	Helitron	RC	896	short	271	high	1652088	chromoarm	1715	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	1481576	1481721	AT4TE07540	.	+	ATREP15	Helitron	RC	145	short	1003	high	1651943	chromoarm	2611	no-CHH	no-CHH	.	.	.	.	.
Chr4	1485969	1485995	AT4TE07560	.	-	ATREP7	Helitron	RC	26	tiny	164	medium	1647669	chromoarm	0	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	1485995	1486549	AT4TE07565	.	+	ATREP10A	Helitron	RC	554	short	279	high	1647115	chromoarm	0	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	1487366	1488605	AT4TE07570	.	+	ATREP16	MuDR	DNA	1239	short	47	low	1645059	chromoarm	0	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	1514069	1514695	AT4TE07710	.	+	ATREP10D	Helitron	RC	626	short	1295	high	1618969	chromoarm	475	no-CHH	no-CHH	.	.	.	.	.
Chr4	1515119	1515531	AT4TE07715	.	-	ATHATN4	HAT	DNA	413	short	56	medium	1618133	chromoarm	1524	.	.	.	.	.	.	.
Chr4	1521258	1521854	AT4TE07740	.	+	ATREP2	Helitron	RC	596	short	164	medium	1611810	chromoarm	758	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	1532594	1533342	AT4TE07800	.	+	ATREP3	Helitron	RC	748	short	1439	high	1600322	chromoarm	858	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	1540766	1541536	AT4TE07840	.	+	ATHPOGON3	Pogo	DNA	770	short	118	medium	1592128	chromoarm	522	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	1564873	1564946	AT4TE07970	.	+	ATLINE1A	L1	LINE	73	tiny	289	high	1568718	chromoarm	818	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	1565685	1567408	AT4TE07975	.	+	ATCOPIA11	Copia	LTR	1723	short	26	low	1566256	chromoarm	1630	no-RdDM	no-RdDM	ExpressedAndAnnotated	1565862	1567395	+	transcript_id-"45ffeea0-181b-4255-8765-8afffd76f6ee|3"
Chr4	1567408	1567437	AT4TE07980	.	+	ATCOPIA11	Copia	LTR	29	tiny	26	low	1566227	chromoarm	2604	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	1568582	1568809	AT4TE07985	.	+	ATENSPM9	En-Spm	DNA	227	short	97	medium	1564855	chromoarm	1232	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	1568809	1568874	AT4TE07990	.	+	HELITRONY1E	Helitron	RC	65	tiny	447	high	1564790	chromoarm	1167	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	1568874	1569443	AT4TE07995	.	+	ATN9_1	MuDR	DNA	569	short	65	medium	1564221	chromoarm	598	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	1573045	1573289	AT4TE08005	.	-	ATENSPM4	En-Spm	DNA	244	short	50	medium	1560375	chromoarm	223	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	1586456	1586590	AT4TE08070	.	-	ATTIRX1B	.	DNA	134	short	44	low	1547074	chromoarm	156	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	1594476	1595478	AT4TE08110	.	+	AT9TSD1	MuDR	DNA	1002	short	55	medium	1538186	chromoarm	371	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	1595478	1595578	AT4TE08115	.	+	ATREP3	Helitron	RC	100	short	1439	high	1538086	chromoarm	1373	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	1595598	1595832	AT4TE08120	.	+	ATDNAI27T9C	MuDR	DNA	234	short	108	medium	1537832	chromoarm	1152	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	1595840	1595962	AT4TE08125	.	+	AT9TSD1	MuDR	DNA	122	short	55	medium	1537702	chromoarm	1022	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	1595962	1597295	AT4TE08130	.	+	AT9TSD1	MuDR	DNA	1333	short	55	medium	1536369	chromoarm	0	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	1597047,1597047	1596165,1596197	-,-	transcript_id-"4a2c3486-3ffd-4f9a-85c5-cdda71a9dde5|3",transcript_id-"06e5fe0b-4471-4def-a1d6-75a72f606484|4"
Chr4	1599133	1599185	AT4TE08135	.	-	HELITRON4	Helitron	RC	53	tiny	199	medium	1534479	chromoarm	41	.	.	.	.	.	.	.
Chr4	1599185	1599731	AT4TE08140	.	+	HELITRON4	Helitron	RC	546	short	199	medium	1533933	chromoarm	94	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	1599731	1599771	AT4TE08145	.	+	ATREP15	Helitron	RC	40	tiny	1003	high	1533893	chromoarm	640	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	1610435	1611121	AT4TE08200	.	+	ATCOPIA30	Copia	LTR	686	short	33	low	1522543	chromoarm	398	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	1611121	1611166	AT4TE08205	.	+	ATIS112A	Harbinger	DNA	45	tiny	173	medium	1522498	chromoarm	868	no-CHH	DCL3-RdDM	.	.	.	.	.
Chr4	1612598	1613961	AT4TE08210	.	+	VANDAL5	MuDR	DNA	1363	short	85	medium	1519703	chromoarm	0	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	1613961	1614045	AT4TE08215	.	-	VANDAL4	MuDR	DNA	84	tiny	102	medium	1519619	chromoarm	1348	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	1614045	1615125	AT4TE08220	.	+	VANDAL4	MuDR	DNA	1080	short	102	medium	1518539	chromoarm	1432	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	1614842	1614991	AT4TE08225	.	-	VANDAL4	MuDR	DNA	149	short	102	medium	1518673	chromoarm	2229	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	1615137	1615246	AT4TE08230	.	+	VANDAL5	MuDR	DNA	109	short	85	medium	1518418	chromoarm	2524	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	1615246	1615350	AT4TE08235	.	+	HELITRON2	Helitron	RC	104	short	194	medium	1518314	chromoarm	2633	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	1615350	1618157	AT4TE08240	.	+	HELITRON2	Helitron	RC	2807	medium	194	medium	1515507	chromoarm	2737	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	1618158	1624320	AT4TE08245	.	+	ATGP1	Gypsy	LTR	6162	long	144	medium	1509344	chromoarm	5545	no-RdDM	no-RdDM	ExpressedAndAnnotated	1623737	1624315	+	transcript_id-"b5df862d-6607-45df-b32a-4acb22a65ea3|4"
Chr4	1620997	1621047	AT4TE08250	.	+	ATGP2	Gypsy	LTR	50	tiny	48	low	1512617	chromoarm	8384	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	1624320	1635706	AT4TE08260	.	+	HELITRON2	Helitron	RC	11386	long	194	medium	1497958	chromoarm	11707	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr4	1624720	1625905	AT4TE08265	.	+	HELITRONY2	Helitron	RC	1185	short	198	medium	1507759	chromoarm	12107	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	1635756	1635895	AT4TE08310	.	-	VANDAL4	MuDR	DNA	139	short	102	medium	1497769	chromoarm	13769	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	1635953	1636993	AT4TE08315	.	-	VANDAL4	MuDR	DNA	1040	short	102	medium	1496671	chromoarm	12671	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	1636993	1637125	AT4TE08320	.	-	VANDAL4	MuDR	DNA	132	short	102	medium	1496539	chromoarm	12539	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	1641349	1642347	AT4TE08340	.	-	HELITRONY2	Helitron	RC	998	short	198	medium	1491317	chromoarm	7317	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	1642368	1642959	AT4TE08345	.	+	ATREP19	.	DNA	591	short	189	medium	1490705	chromoarm	6705	no-RdDM	no-CHH	.	.	.	.	.
Chr4	1642971	1644066	AT4TE08350	.	+	ATENSPM2	En-Spm	DNA	1095	short	114	medium	1489598	chromoarm	5598	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	1644066	1645245	AT4TE08355	.	-	ATGP1	Gypsy	LTR	1179	short	144	medium	1488419	chromoarm	4419	PolIV-and-RDR6-RdDM	no-RdDM	ExpressedAndAnnotated	1645122	1644176	-	transcript_id-"f1d929cf-4ebe-47ee-ad05-87997de4df01|107"
Chr4	1645249	1646095	AT4TE08360	.	+	ATENSPM6	En-Spm	DNA	846	short	151	medium	1487569	chromoarm	3569	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	1647598	1647686	AT4TE08365	.	+	HELITRON1	Helitron	RC	88	tiny	130	medium	1485978	chromoarm	1978	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	1649068	1649432	AT4TE08370	.	+	ATLINE2	L1	LINE	364	short	138	medium	1484232	chromoarm	232	DCL3-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	1650716	1651979	AT4TE08375	.	-	Unassigned	.	Unassigned	1263	short	.	low	1481685	chromoarm	262	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	1651633	1651974	AT4TE08380	.	-	ATLINEIII	L1	LINE	341	short	196	medium	1481690	chromoarm	267	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	1653559	1653590	AT4TE08385	.	-	ATENSPM2	En-Spm	DNA	31	tiny	114	medium	1480074	chromoarm	583	RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr4	1653590	1655934	AT4TE08390	.	-	ATENSPM2	En-Spm	DNA	2344	medium	114	medium	1477730	chromoarm	614	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	1655934	1656010	AT4TE08395	.	-	ATENSPM6	En-Spm	DNA	76	tiny	151	medium	1477654	chromoarm	2958	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	1656689	1657382	AT4TE08400	.	-	ATLINE1A	L1	LINE	693	short	289	high	1476282	chromoarm	3713	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	1658332	1658406	AT4TE08405	.	-	ATREP15	Helitron	RC	74	tiny	1003	high	1475258	chromoarm	3585	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	1658406	1660614	AT4TE08410	.	+	HELITRONY1E	Helitron	RC	2208	medium	447	high	1473050	chromoarm	1377	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	1660614	1660660	AT4TE08415	.	-	ATREP10C	Helitron	RC	46	tiny	123	medium	1473004	chromoarm	1331	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	1660835	1660935	AT4TE08420	.	-	HARBINGER	Harbinger	DNA	100	short	90	medium	1472729	chromoarm	1056	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	1663629	1663905	AT4TE08430	.	+	HELITRONY1C	Helitron	RC	276	short	120	medium	1469759	chromoarm	114	no-CHH	no-RdDM	.	.	.	.	.
Chr4	1664535	1669364	AT4TE08435	.	-	ATENSPM2	En-Spm	DNA	4829	medium	114	medium	1464300	chromoarm	1020	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	1667889	1669206	AT4TE08440	.	+	ATGP2	Gypsy	LTR	1317	short	48	low	1464458	chromoarm	4374	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr4	1669365	1680248	AT4TE08445	.	-	ATLANTYS2	Gypsy	LTR	10883	long	179	medium	1453416	chromoarm	5850	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	1670463	1673259	+	transcript_id-"4339d0da-2b86-4dda-9437-f463ba472c1e|5"
Chr4	1680248	1682026	AT4TE08450	.	-	ATENSPM2	En-Spm	DNA	1778	short	114	medium	1451638	chromoarm	16733	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr4	1682026	1684460	AT4TE08455	.	-	ATHILA3	Gypsy	LTR	2434	medium	243	high	1449204	chromoarm	18511	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	1684460	1684510	AT4TE08460	.	-	ATHILA5	Gypsy	LTR	50	tiny	131	medium	1449154	chromoarm	20945	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	1684510	1698912	AT4TE08465	.	-	ATHILA3	Gypsy	LTR	14402	long	243	high	1434752	chromoarm	20995	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	1684955	1684996	AT4TE08470	.	-	ATHILA3	Gypsy	LTR	41	tiny	243	high	1448668	chromoarm	21440	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	1684996	1695918	AT4TE08475	.	-	ATHILA2	Gypsy	LTR	10922	long	413	high	1437746	chromoarm	21481	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	1742384	1743785	AT4TE08720	.	-	ATHILA4A	Gypsy	LTR	1401	short	310	high	1389879	pericentromeric	28377	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	1743786	1743826	AT4TE08725	.	-	ATLANTYS1	Gypsy	LTR	40	tiny	153	medium	1389838	pericentromeric	28336	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	1743826	1745516	AT4TE08730	.	-	ATLANTYS1	Gypsy	LTR	1690	short	153	medium	1388148	pericentromeric	26646	no-RdDM	no-CHH	.	.	.	.	.
Chr4	1745516	1745683	AT4TE08735	.	-	ATLANTYS1	Gypsy	LTR	167	short	153	medium	1387981	pericentromeric	26479	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	1746052	1746665	AT4TE08740	.	-	TAT1_ATH	Gypsy	LTR	613	short	87	medium	1386999	pericentromeric	25497	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	1747548	1747895	AT4TE08745	.	-	ATENSPM2	En-Spm	DNA	347	short	114	medium	1385769	pericentromeric	24267	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	1748764	1748799	AT4TE08750	.	-	ATREP11	Helitron	RC	35	tiny	841	high	1384865	pericentromeric	23363	no-CHH	no-CHH	.	.	.	.	.
Chr4	1748799	1749231	AT4TE08755	.	-	HELITRONY1D	Helitron	RC	432	short	756	high	1384433	pericentromeric	22931	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	1749249	1749365	AT4TE08760	.	-	ATREP11A	Helitron	RC	116	short	95	medium	1384299	pericentromeric	22797	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	1749724	1749747	AT4TE08765	.	-	ATREP3	Helitron	RC	23	tiny	1439	high	1383917	pericentromeric	22415	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	1749759	1749802	AT4TE08770	.	+	ATCOPIA30	Copia	LTR	43	tiny	33	low	1383862	pericentromeric	22360	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	1749802	1750895	AT4TE08775	.	-	ATREP10D	Helitron	RC	1093	short	1295	high	1382769	pericentromeric	21267	no-CHH	RDR6-RdDM	.	.	.	.	.
Chr4	1751747	1754082	AT4TE08780	.	+	ATCOPIA95	Copia	LTR	2335	medium	72	medium	1379582	pericentromeric	18080	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	1754082	1754357	AT4TE08785	.	+	ATCOPIA49	Copia	LTR	275	short	34	low	1379307	pericentromeric	17805	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	1755746	1755810	AT4TE08790	.	-	HELITRONY1A	Helitron	RC	64	tiny	271	high	1377854	pericentromeric	16352	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	1755810	1756438	AT4TE08795	.	-	HELITRONY1D	Helitron	RC	628	short	756	high	1377226	pericentromeric	15724	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	1756438	1756676	AT4TE08800	.	+	HELITRONY3	Helitron	RC	238	short	1399	high	1376988	pericentromeric	15486	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	1758775	1758879	AT4TE08810	.	-	HELITRON3	Helitron	RC	104	short	53	medium	1374785	pericentromeric	13283	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	1758928	1759026	AT4TE08815	.	-	HELITRON3	Helitron	RC	98	tiny	53	medium	1374638	pericentromeric	13136	PolIV-and-RDR6-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	1760029	1760229	AT4TE08820	.	-	ATREP10B	Helitron	RC	200	short	491	high	1373435	pericentromeric	11933	no-CHH	no-RdDM	LowExpressed	.	.	.	.
Chr4	1760229	1760889	AT4TE08825	.	-	BRODYAGA2	MuDR	DNA	660	short	525	high	1372775	pericentromeric	11273	no-CHH	no-CHH	.	.	.	.	.
Chr4	1760891	1761188	AT4TE08830	.	+	ATREP5	Helitron	RC	297	short	624	high	1372476	pericentromeric	10974	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	1761188	1761666	AT4TE08835	.	-	ROMANIAT5	Copia	LTR	478	short	49	low	1371998	pericentromeric	10496	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	1763855	1763888	AT4TE08845	.	-	ATHILA2	Gypsy	LTR	33	tiny	413	high	1369776	pericentromeric	8274	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	1763888	1765667	AT4TE08850	.	-	ATHILA2	Gypsy	LTR	1779	short	413	high	1367997	pericentromeric	6495	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	1766201	1766223	AT4TE08855	.	+	ATLINE1_6	L1	LINE	22	tiny	129	medium	1367441	pericentromeric	5939	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	1766223	1767009	AT4TE08860	.	-	ROMANIAT5	Copia	LTR	786	short	49	low	1366655	pericentromeric	5153	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	1767201	1767377	AT4TE08865	.	-	ATENSPM9	En-Spm	DNA	176	short	97	medium	1366287	pericentromeric	4785	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	1767610	1768501	AT4TE08870	.	-	ATCOPIA27	Copia	LTR	891	short	19	low	1365163	pericentromeric	3661	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	1768501	1770033	AT4TE08875	.	-	ATCOPIA28	Copia	LTR	1532	short	81	medium	1363631	pericentromeric	2129	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	1776669	1777277	AT4TE08910	.	+	ATREP10A	Helitron	RC	608	short	279	high	1356387	pericentromeric	2289	no-CHH	no-CHH	.	.	.	.	.
Chr4	1777277	1778174	AT4TE08915	.	+	ATREP10	Helitron	RC	897	short	63	medium	1355490	pericentromeric	2897	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	1778339	1781296	AT4TE08920	.	+	AT9TSD1	MuDR	DNA	2957	medium	55	medium	1352368	pericentromeric	3105	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	1781296	1781999	AT4TE08925	.	+	ATREP5	Helitron	RC	703	short	624	high	1351665	pericentromeric	2402	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	1783487	1784062	AT4TE08930	.	+	VANDAL8	MuDR	DNA	575	short	123	medium	1349602	pericentromeric	339	no-CHH	no-CHH	.	.	.	.	.
Chr4	1786476	1786517	AT4TE08940	.	+	ATHILA2	Gypsy	LTR	41	tiny	413	high	1347147	pericentromeric	1946	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	1786518	1789320	AT4TE08945	.	+	ATHILA2	Gypsy	LTR	2802	medium	413	high	1344344	pericentromeric	1119	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	1789320	1789949	AT4TE08950	.	-	TAT1_ATH	Gypsy	LTR	629	short	87	medium	1343715	pericentromeric	490	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr4	1792861	1794575	AT4TE08960	.	-	ATLANTYS2	Gypsy	LTR	1714	short	179	medium	1339089	pericentromeric	403	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	1794699	1794720	AT4TE08965	.	-	TAT1_ATH	Gypsy	LTR	21	tiny	87	medium	1338944	pericentromeric	2241	no-RdDM	no-CHH	.	.	.	.	.
Chr4	1794720	1795813	AT4TE08970	.	-	TAT1_ATH	Gypsy	LTR	1093	short	87	medium	1337851	pericentromeric	2262	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	1795813	1796057	AT4TE08975	.	+	ATHILA2	Gypsy	LTR	244	short	413	high	1337607	pericentromeric	3355	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	1796058	1804755	AT4TE08980	.	+	ATGP2	Gypsy	LTR	8697	long	48	low	1328909	pericentromeric	3600	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	1799355	1803605	AT4TE08985	.	+	ATGP2N	Gypsy	LTR	4250	medium	54	medium	1330059	pericentromeric	6897	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	1804759	1807656	AT4TE08990	.	+	ATHILA6A	Gypsy	LTR	2897	medium	247	high	1326008	pericentromeric	12301	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	1807656	1812997	AT4TE08995	.	+	ATHILA2	Gypsy	LTR	5341	long	413	high	1320667	pericentromeric	15198	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	1813411	1820340	AT4TE09000	.	+	VANDAL3	MuDR	DNA	6929	long	177	medium	1313324	pericentromeric	20953	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	1815002	1815532	+	transcript_id-"dc417bfd-305c-4aba-8ace-63c240e2432c|7"
Chr4	1814106	1814779	AT4TE09005	.	-	ATHILA4C	Gypsy	LTR	673	short	206	high	1318885	pericentromeric	21648	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	1814779	1815207	AT4TE09010	.	-	HELITRON1	Helitron	RC	428	short	130	medium	1318457	pericentromeric	22321	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	1815612	1815741	AT4TE09015	.	-	ATHILA4A	Gypsy	LTR	129	short	310	high	1317923	pericentromeric	23154	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	1815741	1816882	AT4TE09020	.	+	ATHILA2	Gypsy	LTR	1141	short	413	high	1316782	pericentromeric	23283	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr4	1816901	1819323	AT4TE09025	.	-	ATHILA4C	Gypsy	LTR	2422	medium	206	high	1314341	pericentromeric	24443	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr4	1821957	1822129	AT4TE09035	.	-	VANDAL7	MuDR	DNA	172	short	36	low	1311535	pericentromeric	29499	no-RdDM	no-CHH	.	.	.	.	.
Chr4	1823505	1823790	AT4TE09040	.	-	HELITRON1	Helitron	RC	285	short	130	medium	1309874	pericentromeric	31047	no-RdDM	no-CHH	.	.	.	.	.
Chr4	1823790	1824885	AT4TE09045	.	-	HELITRON4	Helitron	RC	1095	short	199	medium	1308779	pericentromeric	31332	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	1824892	1825343	AT4TE09050	.	-	ATHILA3	Gypsy	LTR	451	short	243	high	1308321	pericentromeric	32434	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	1825484	1828620	AT4TE09055	.	-	ATHILA3	Gypsy	LTR	3136	medium	243	high	1305044	pericentromeric	33026	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr4	1828620	1829890	AT4TE09060	.	-	ATHILA5	Gypsy	LTR	1270	short	131	medium	1303774	pericentromeric	36162	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	1830346	1830543	AT4TE09065	.	-	ATHILA0_I	Gypsy	LTR	197	short	138	medium	1303121	pericentromeric	37888	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	1830561	1830755	AT4TE09070	.	-	ATHILA3	Gypsy	LTR	194	short	243	high	1302909	pericentromeric	38103	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	1830755	1835645	AT4TE09075	.	-	ATHILA3	Gypsy	LTR	4890	medium	243	high	1298019	pericentromeric	34776	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	1835797	1848371	AT4TE09080	.	-	VANDAL21	MuDR	DNA	12574	long	64	medium	1285293	pericentromeric	22050	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	1838725,1843153,1845147,1847732	1842774,1846265,1846308,1846981	+,+,+,-	transcript_id-"2c4a9072-4394-4e5a-add4-2cfab5d42f4b|6",transcript_id-"05c8f5e1-b434-4593-9861-ad7bce3a9608|19",transcript_id-"f7627c16-3cbb-4096-86af-d3fead66569a|3",transcript_id-"f53a73c3-fd60-4b0f-8e75-0d33b5bcd8ef|3"
Chr4	1838259	1846903	AT4TE09085	.	+	ATENSPM5	En-Spm	DNA	8644	long	111	medium	1286761	pericentromeric	23518	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	1838725,1843153,1845147,1845959	1842774,1846265,1846308,1846345	+,+,+,+	transcript_id-"2c4a9072-4394-4e5a-add4-2cfab5d42f4b|6",transcript_id-"05c8f5e1-b434-4593-9861-ad7bce3a9608|19",transcript_id-"f7627c16-3cbb-4096-86af-d3fead66569a|3",transcript_id-"4cac2d06-0c53-4432-a830-70ddaa9b5a53|3"
Chr4	1848371	1848745	AT4TE09090	.	-	HELITRON4	Helitron	RC	374	short	199	medium	1284919	pericentromeric	21676	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	1848745	1850143	AT4TE09095	.	-	HELITRON3	Helitron	RC	1398	short	53	medium	1283521	pericentromeric	20278	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	1852288	1853682	AT4TE09105	.	+	HELITRON1	Helitron	RC	1394	short	130	medium	1279982	pericentromeric	16739	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	1854123	1854816	AT4TE09110	.	-	ATREP6	Helitron	RC	693	short	181	medium	1278848	pericentromeric	15605	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	1854816	1854850	AT4TE09115	.	+	HELITRONY1D	Helitron	RC	34	tiny	756	high	1278814	pericentromeric	15571	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr4	1855401	1855489	AT4TE09120	.	+	ATREP10C	Helitron	RC	88	tiny	123	medium	1278175	pericentromeric	14932	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	1857646	1857958	AT4TE09130	.	+	ATLINEIII	L1	LINE	312	short	196	medium	1275706	pericentromeric	12463	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	1858674	1860023	AT4TE09135	.	+	ATLINE2	L1	LINE	1349	short	138	medium	1273641	pericentromeric	10398	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	1861625	1862192	AT4TE09140	.	-	ATREP10A	Helitron	RC	567	short	279	high	1271472	pericentromeric	8229	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	1862192	1862823	AT4TE09145	.	-	ATREP9	Helitron	RC	631	short	201	high	1270841	pericentromeric	7598	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	1862823	1862847	AT4TE09150	.	+	ATREP10A	Helitron	RC	24	tiny	279	high	1270817	pericentromeric	7574	no-CHH	no-CHH	.	.	.	.	.
Chr4	1862847	1864259	AT4TE09155	.	+	ATREP10A	Helitron	RC	1412	short	279	high	1269405	pericentromeric	6162	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	1864259	1864335	AT4TE09160	.	-	HELITRONY1E	Helitron	RC	76	tiny	447	high	1269329	pericentromeric	6086	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	1864335	1865133	AT4TE09165	.	+	ATHPOGON3	Pogo	DNA	798	short	118	medium	1268531	pericentromeric	5288	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	1865133	1865157	AT4TE09170	.	+	ATREP10B	Helitron	RC	24	tiny	491	high	1268507	pericentromeric	5264	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	1865832	1866558	AT4TE09175	.	+	Unassigned	.	Unassigned	726	short	.	low	1267106	pericentromeric	3863	no-RdDM	no-CHH	ExpressedAndAnnotated	1865164,1865210	1866608,1866608	+,+	transcript_id-"44673543-5570-4f05-be05-9e25bffe7fe8|36",transcript_id-"206e25ff-dca4-4f0d-a3f7-142f54175a7b|3"
Chr4	1866283	1866608	AT4TE09180	.	+	ATLINE1_6	L1	LINE	325	short	129	medium	1267056	pericentromeric	3813	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	1865210	1866608	+	transcript_id-"206e25ff-dca4-4f0d-a3f7-142f54175a7b|3"
Chr4	1866608	1866671	AT4TE09185	.	-	ATREP15	Helitron	RC	63	tiny	1003	high	1266993	pericentromeric	3750	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	1866671	1867893	AT4TE09190	.	+	ARNOLDY2	MuDR	DNA	1222	short	288	high	1265771	pericentromeric	2528	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	1867901	1867975	AT4TE09195	.	+	ARNOLD2	MuDR	DNA	74	tiny	68	medium	1265689	pericentromeric	2446	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	1872415	1872632	AT4TE09210	.	-	ATMU2	MuDR	DNA	217	short	64	medium	1261032	pericentromeric	28	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	1873417	1873623	AT4TE09215	.	-	ATMU2	MuDR	DNA	206	short	64	medium	1260041	pericentromeric	0	DCL3-RdDM	no-RdDM	.	.	.	.	.
Chr4	1873623	1873713	AT4TE09220	.	+	ATCOPIA37	Copia	LTR	90	tiny	32	low	1259951	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	1874027	1875724	AT4TE09225	.	+	ATCOPIA37	Copia	LTR	1697	short	32	low	1257940	pericentromeric	0	no-CHH	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	1874715	1869217	-	transcript_id-"afe74c09-5e8e-488d-a15f-067e674e5021|10"
Chr4	1875724	1875764	AT4TE09230	.	+	ATCOPIA37	Copia	LTR	40	tiny	32	low	1257900	pericentromeric	491	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	1877125	1877146	AT4TE09235	.	-	ATREP5	Helitron	RC	21	tiny	624	high	1256518	pericentromeric	741	no-CHH	no-CHH	.	.	.	.	.
Chr4	1877146	1877854	AT4TE09240	.	-	ATREP15	Helitron	RC	708	short	1003	high	1255810	pericentromeric	33	no-CHH	no-CHH	.	.	.	.	.
Chr4	1877854	1881592	AT4TE09245	.	+	HELITRONY3	Helitron	RC	3738	medium	1399	high	1252072	pericentromeric	0	no-RdDM	no-RdDM	ExpressedAndAnnotated	1879678	1880780	+	transcript_id-"9cf8dbbc-99bc-455c-9812-3705699568f8|13"
Chr4	1881361	1881543	AT4TE09250	.	+	ARNOLD4	MuDR	DNA	182	short	23	low	1252121	pericentromeric	250	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	1881592	1885259	AT4TE09255	.	-	HELITRONY3	Helitron	RC	3667	medium	1399	high	1248405	pericentromeric	481	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	1885259	1885299	AT4TE09260	.	-	ATREP11A	Helitron	RC	40	tiny	95	medium	1248365	pericentromeric	2373	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	1885299	1885355	AT4TE09265	.	-	BRODYAGA1A	MuDR	DNA	56	tiny	586	high	1248309	pericentromeric	2317	no-CHH	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	1885939	1886006	AT4TE09270	.	-	HELITRONY1E	Helitron	RC	67	tiny	447	high	1247658	pericentromeric	1666	no-CHH	no-CHH	.	.	.	.	.
Chr4	1886229	1887357	AT4TE09275	.	-	HELITRON1	Helitron	RC	1128	short	130	medium	1246307	pericentromeric	315	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	1887357	1887504	AT4TE09280	.	-	META1	Copia	LTR	147	short	138	medium	1246160	pericentromeric	168	no-CHH	no-CHH	.	.	.	.	.
Chr4	1890479	1890720	AT4TE09290	.	+	ATHATN2	HAT	DNA	241	short	46	low	1242944	pericentromeric	274	no-CHH	no-RdDM	.	.	.	.	.
Chr4	1890720	1909218	AT4TE09295	.	-	VANDAL4	MuDR	DNA	18498	long	102	medium	1224446	pericentromeric	515	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	1909218	1909300	AT4TE09300	.	+	ATHATN2	HAT	DNA	82	tiny	46	low	1224364	pericentromeric	19013	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	1909378	1909807	AT4TE09305	.	-	BRODYAGA1A	MuDR	DNA	429	short	586	high	1223857	pericentromeric	19173	DCL3-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	1909807	1919523	AT4TE09310	.	+	ARNOLD3	MuDR	DNA	9716	long	45	low	1214141	pericentromeric	12637	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	1918627,1918583	1915937,1916315	-,-	transcript_id-"d4a9ec6c-e62f-44ca-b715-3d1bbac8cc74|11",transcript_id-"13530a07-8d16-4dbb-8c8c-b2c7f4700a58|9"
Chr4	1919523	1925047	AT4TE09315	.	+	ATLINE1_6	L1	LINE	5524	long	129	medium	1208617	pericentromeric	7113	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	1919823,1919717	1919284,1919478	-,-	transcript_id-"4c473b62-d165-4a04-99fd-b9c74a4b240e|3",transcript_id-"c638114a-f975-4219-985c-fe5a86a84400|3"
Chr4	1925063	1930925	AT4TE09320	.	+	ARNOLD2	MuDR	DNA	5862	long	68	medium	1202739	pericentromeric	1235	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	1930767	1925511	-	transcript_id-"73bbb5eb-7d6c-48d8-900e-c7a1df7dc1a4|7"
Chr4	1930925	1930969	AT4TE09325	.	+	ARNOLD1	MuDR	DNA	44	tiny	39	low	1202695	pericentromeric	1191	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	1930969	1931430	AT4TE09330	.	+	ATHATN2	HAT	DNA	461	short	46	low	1202234	pericentromeric	730	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	1932605	1932733	AT4TE09335	.	-	RathE1_cons	.	RathE1_cons	128	short	213	high	1200931	pericentromeric	0	no-CHH	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	1938191	1938479	AT4TE09360	.	-	ATLINE1_5	L1	LINE	288	short	91	medium	1195185	pericentromeric	348	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	1939989	1940192	AT4TE09365	.	-	HELITRON1	Helitron	RC	203	short	130	medium	1193472	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	1943283	1943478	AT4TE09375	.	+	ATHATN1	HAT	DNA	195	short	69	medium	1190186	pericentromeric	518	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	1943478	1943750	AT4TE09380	.	+	VANDALNX1	MuDR	DNA	272	short	14	low	1189914	pericentromeric	713	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	1943750	1955321	AT4TE09385	.	+	ATLANTYS1	Gypsy	LTR	11571	long	153	medium	1178343	pericentromeric	985	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	1944000,1953490,1954392	1944212,1951316,1951318	+,-,-	transcript_id-"3fca233c-3826-4665-b815-df4a7c981396|11",transcript_id-"9133cbfc-b759-4bd8-8dfd-0c6822607488|3",transcript_id-"9598631b-e372-41e3-8989-a19e91b43361|19"
Chr4	1955321	1956374	AT4TE09390	.	+	VANDALNX1	MuDR	DNA	1053	short	14	low	1177290	pericentromeric	5265	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	1956374	1956596	AT4TE09395	.	+	ATHATN1	HAT	DNA	222	short	69	medium	1177068	pericentromeric	5043	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	1956611	1957712	AT4TE09400	.	+	ATREP11	Helitron	RC	1101	short	841	high	1175952	pericentromeric	3927	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	1957712	1957924	AT4TE09405	.	+	HELITRONY1C	Helitron	RC	212	short	120	medium	1175740	pericentromeric	3715	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	1958752	1960245	AT4TE09410	.	-	TNAT2A	.	DNA	1493	short	38	low	1173419	pericentromeric	1394	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	1960256	1961060	AT4TE09415	.	+	HELITRONY1A	Helitron	RC	804	short	271	high	1172604	pericentromeric	579	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	1961856	1962853	AT4TE09420	.	+	ATREP10D	Helitron	RC	997	short	1295	high	1170811	pericentromeric	109	no-CHH	no-CHH	.	.	.	.	.
Chr4	1962853	1963002	AT4TE09425	.	+	ATHAT1	HAT	DNA	149	short	105	medium	1170662	pericentromeric	383	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	1966042	1966269	AT4TE09435	.	+	ATENSPM9	En-Spm	DNA	227	short	97	medium	1167395	pericentromeric	392	no-CHH	no-CHH	.	.	.	.	.
Chr4	1966397	1966428	AT4TE09440	.	+	ATENSPM6	En-Spm	DNA	31	tiny	151	medium	1167236	pericentromeric	747	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr4	1966428	1968034	AT4TE09445	.	+	ATENSPM6	En-Spm	DNA	1606	short	151	medium	1165630	pericentromeric	778	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	1968034	1968088	AT4TE09450	.	+	ATENSPM6	En-Spm	DNA	54	tiny	151	medium	1165576	pericentromeric	2384	no-CHH	no-CHH	.	.	.	.	.
Chr4	1968431	1970549	AT4TE09455	.	+	ATENSPM11	En-Spm	DNA	2118	medium	47	low	1163115	pericentromeric	2041	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	1970549	1973228	AT4TE09460	.	+	ATCOPIA44	Copia	LTR	2679	medium	12	low	1160436	pericentromeric	0	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	1972559	1972795	AT4TE09465	.	-	ATCOPIA34	Copia	LTR	236	short	16	low	1160869	pericentromeric	0	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	1974081	1974621	AT4TE09470	.	-	ATENSPM5	En-Spm	DNA	540	short	111	medium	1159043	pericentromeric	67	no-RdDM	no-CHH	.	.	.	.	.
Chr4	1976921	1989659	AT4TE09480	.	-	VANDAL20	MuDR	DNA	12738	long	51	medium	1144005	pericentromeric	2907	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	1984904,1984901	1983970,1984079	-,-	transcript_id-"75a09b26-9cae-4ce4-967a-d1c647ea72c4|13",transcript_id-"a19460af-eed1-44a6-9439-c2f1a37fd685|5"
Chr4	1989676	1992082	AT4TE09485	.	+	ATCOPIA51	Copia	LTR	2406	medium	14	low	1141582	pericentromeric	15662	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	1990444	1990612	AT4TE09490	.	+	ATCOPIA82	Copia	LTR	168	short	7	low	1143052	pericentromeric	16430	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	1992082	1992131	AT4TE09495	.	+	ATRE1	Copia	LTR	49	tiny	22	low	1141533	pericentromeric	18068	no-RdDM	no-CHH	.	.	.	.	.
Chr4	1992131	1992302	AT4TE09500	.	+	ATCOPIA2	Copia	LTR	171	short	6	low	1141362	pericentromeric	18117	no-RdDM	no-CHH	.	.	.	.	.
Chr4	1993914	1994100	AT4TE09505	.	-	ARNOLD2	MuDR	DNA	186	short	68	medium	1139564	pericentromeric	19900	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	1994598	1993867	-	transcript_id-"cff8e092-6ae2-4268-b3db-6af40226a0b8|3"
Chr4	1994303	1994736	AT4TE09510	.	-	ARNOLD2	MuDR	DNA	433	short	68	medium	1138928	pericentromeric	20289	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	1994598,1994598,1994663,1994624	1993851,1993867,1994214,1994356	-,-,-,-	transcript_id-"b8e181e9-8b79-43cf-98cd-42297b8bf163|8",transcript_id-"cff8e092-6ae2-4268-b3db-6af40226a0b8|3",transcript_id-"fc4440a0-8c40-49ce-9f2c-f814ad01b1de|3",transcript_id-"573543c5-6dc8-4752-97ea-b35fb661e456|10"
Chr4	1994736	1995273	AT4TE09515	.	-	ATREP19	.	DNA	537	short	189	medium	1138391	pericentromeric	20722	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	1995273	1995303	AT4TE09520	.	+	BRODYAGA2	MuDR	DNA	30	tiny	525	high	1138361	pericentromeric	21259	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	1997621	1997642	AT4TE09530	.	+	TA11	L1	LINE	21	tiny	157	medium	1136022	pericentromeric	22828	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	1997642	1998069	AT4TE09535	.	+	TA11	L1	LINE	427	short	157	medium	1135595	pericentromeric	22401	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	1998069	1999041	AT4TE09540	.	+	ATHILA4	Gypsy	LTR	972	short	250	high	1134623	pericentromeric	21429	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	1999041	2000222	AT4TE09545	.	+	ATHILA4A	Gypsy	LTR	1181	short	310	high	1133442	pericentromeric	20248	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr4	2000222	2000985	AT4TE09550	.	+	ATHILA4B_LTR	Gypsy	LTR	763	short	143	medium	1132679	pericentromeric	19485	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	2000985	2001188	AT4TE09555	.	+	ATENSPM2	En-Spm	DNA	203	short	114	medium	1132476	pericentromeric	19282	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	2001188	2010958	AT4TE09560	.	+	ATLANTYS2	Gypsy	LTR	9770	long	179	medium	1122706	pericentromeric	9512	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	2009857	2008190	-	transcript_id-"99361b7d-5508-4e97-bbdc-582838f147d1|12"
Chr4	2010958	2013986	AT4TE09565	.	+	ATENSPM2	En-Spm	DNA	3028	medium	114	medium	1119678	pericentromeric	6484	no-RdDM	no-RdDM	ExpressedAndAnnotated	2013158	2014255	+	transcript_id-"a5ff9e2e-06a5-4614-b518-6cefbb731bcb|19"
Chr4	2013989	2014537	AT4TE09570	.	-	ATGP10	Gypsy	LTR	548	short	165	medium	1119127	pericentromeric	5933	no-RdDM	no-RdDM	ExpressedAndAnnotated	2013158,2015616	2014255,2014208	+,-	transcript_id-"a5ff9e2e-06a5-4614-b518-6cefbb731bcb|19",transcript_id-"9a77c7e0-cec7-433c-9308-e89ed9ec02f6|56"
Chr4	2016443	2018942	AT4TE09580	.	+	ATENSPM4	En-Spm	DNA	2499	medium	50	medium	1114722	pericentromeric	1528	no-RdDM	no-RdDM	ExpressedAndAnnotated	2018250	2018456	+	transcript_id-"dfd1fc8c-2737-43b6-9000-82ab6d81e4bd|18"
Chr4	2018787	2019963	AT4TE09585	.	+	Unassigned	.	Unassigned	1176	short	.	low	1113701	pericentromeric	507	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	2019057	2019410	AT4TE09590	.	+	TA11	L1	LINE	353	short	157	medium	1114254	pericentromeric	1060	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	2023787	2023818	AT4TE09610	.	+	ATREP10B	Helitron	RC	31	tiny	491	high	1109846	pericentromeric	114	no-CHH	no-CHH	.	.	.	.	.
Chr4	2023818	2024306	AT4TE09615	.	-	ATHATN3	HAT	DNA	488	short	70	medium	1109358	pericentromeric	145	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2024306	2024362	AT4TE09620	.	+	ATREP10B	Helitron	RC	56	tiny	491	high	1109302	pericentromeric	510	no-CHH	no-CHH	.	.	.	.	.
Chr4	2029283	2029304	AT4TE09650	.	+	ATHATN10	HAT	DNA	21	tiny	48	low	1104360	pericentromeric	417	no-CHH	no-RdDM	.	.	.	.	.
Chr4	2029305	2029914	AT4TE09655	.	+	ATHATN10	HAT	DNA	609	short	48	low	1103750	pericentromeric	439	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	2029914	2029971	AT4TE09660	.	-	ATDNA2T9C	MuDR	DNA	57	tiny	242	high	1103693	pericentromeric	419	no-CHH	no-CHH	.	.	.	.	.
Chr4	2031890	2032444	AT4TE09670	.	-	BRODYAGA1A	MuDR	DNA	554	short	586	high	1101220	pericentromeric	220	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2038207	2038291	AT4TE09700	.	+	VANDAL13	MuDR	DNA	84	tiny	38	low	1095373	pericentromeric	2261	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2038649	2039623	AT4TE09705	.	-	ATGP6	Gypsy	LTR	974	short	25	low	1094041	pericentromeric	2703	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2039995	2040096	AT4TE09710	.	+	VANDAL14	MuDR	DNA	101	short	25	low	1093568	pericentromeric	4049	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2040096	2040431	AT4TE09715	.	+	ATREP11A	Helitron	RC	335	short	95	medium	1093233	pericentromeric	4150	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2040438	2042502	AT4TE09720	.	-	ATGP7	Gypsy	LTR	2064	medium	47	low	1091162	pericentromeric	4492	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2042502	2042534	AT4TE09725	.	-	ATGP6	Gypsy	LTR	32	tiny	25	low	1091130	pericentromeric	6556	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr4	2044346	2045063	AT4TE09730	.	-	ATCOPIA27	Copia	LTR	717	short	19	low	1088601	pericentromeric	8400	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2045186	2049417	AT4TE09735	.	+	TAT1_ATH	Gypsy	LTR	4231	medium	87	medium	1084247	pericentromeric	5218	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	2046033	2045806	-	transcript_id-"508bb6c9-96e7-4d57-9a57-06321de1ba96|3"
Chr4	2049620	2050077	AT4TE09740	.	-	ATCOPIA28	Copia	LTR	457	short	81	medium	1083587	pericentromeric	4558	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	2050217	2051093	AT4TE09745	.	+	ATREP3	Helitron	RC	876	short	1439	high	1082571	pericentromeric	3542	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2051100	2051377	AT4TE09750	.	+	ATREP3	Helitron	RC	277	short	1439	high	1082287	pericentromeric	3258	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2051377	2052662	AT4TE09755	.	+	SIMPLEGUY1	Harbinger	DNA	1285	short	116	medium	1081002	pericentromeric	1973	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2052862	2054092	AT4TE09760	.	+	ATHILA4A	Gypsy	LTR	1230	short	310	high	1079572	pericentromeric	543	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	2054092	2054167	AT4TE09765	.	+	ATHILA4D_LTR	Gypsy	LTR	75	tiny	106	medium	1079497	pericentromeric	468	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	2058250	2058983	AT4TE09780	.	-	ATENSPM9	En-Spm	DNA	733	short	97	medium	1074681	pericentromeric	2401	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	2060436	2057555	-	transcript_id-"ec88249d-e491-4808-a474-e60ba3513961|30"
Chr4	2061692	2061885	AT4TE09790	.	-	ATENSPM5	En-Spm	DNA	193	short	111	medium	1071779	pericentromeric	5843	DCL3-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2061888	2064098	AT4TE09795	.	+	ATHILA3	Gypsy	LTR	2210	medium	243	high	1069566	pericentromeric	6039	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	2064098	2068831	AT4TE09800	.	-	ATCOPIA59	Copia	LTR	4733	medium	20	low	1064833	pericentromeric	8249	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	2068831	2071139	AT4TE09805	.	+	ATCOPIA20	Copia	LTR	2308	medium	6	low	1062525	pericentromeric	12982	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	2071139	2071549	AT4TE09810	.	+	ROMANIAT5	Copia	LTR	410	short	49	low	1062115	pericentromeric	15290	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	2070998,2071007,2073926	2071730,2071652,2071157	+,+,-	transcript_id-"ac22fb32-f4bd-40ea-b704-dc70455f0ad2|3",transcript_id-"c0a76879-f37e-4c9d-b6c1-3fc710766b5b|30",transcript_id-"275c5b0f-7cc7-4148-8258-e864e2da7103|3"
Chr4	2071570	2071939	AT4TE09815	.	+	ATN9_1	MuDR	DNA	369	short	65	medium	1061725	pericentromeric	15721	PolIV-and-RDR6-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	2072037	2072129	AT4TE09820	.	+	ARNOLDY1	MuDR	DNA	92	tiny	237	high	1061535	pericentromeric	16188	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	2072129	2075641	AT4TE09825	.	-	HELITRONY3	Helitron	RC	3512	medium	1399	high	1058023	pericentromeric	16280	PolIV-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	2073926,2073254	2071157,2074005	-,+	transcript_id-"275c5b0f-7cc7-4148-8258-e864e2da7103|3",transcript_id-"119535ee-71a1-4b64-8ad8-a4dbe2e66b6f|3"
Chr4	2073195	2073232	AT4TE09830	.	-	ARNOLDY2	MuDR	DNA	37	tiny	288	high	1060432	pericentromeric	17346	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	2074317	2074695	AT4TE09835	.	+	ATREP10D	Helitron	RC	378	short	1295	high	1058969	pericentromeric	18468	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2076981	2077353	AT4TE09845	.	+	ATIS112A	Harbinger	DNA	372	short	173	medium	1056311	pericentromeric	21132	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	2076822	2077470	+	transcript_id-"94a60f61-167b-43b9-a454-3f8092d5b693|132"
Chr4	2077461	2077604	AT4TE09850	.	-	ATREP5	Helitron	RC	143	short	624	high	1056060	pericentromeric	21612	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	2077604	2078303	AT4TE09855	.	-	HELITRONY3	Helitron	RC	699	short	1399	high	1055361	pericentromeric	21755	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	2078303	2078331	AT4TE09860	.	-	ATREP5	Helitron	RC	28	tiny	624	high	1055333	pericentromeric	22454	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr4	2078331	2078879	AT4TE09865	.	+	ATREP15	Helitron	RC	548	short	1003	high	1054785	pericentromeric	22482	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2078890	2079096	AT4TE09870	.	+	ATMU1	MuDR	DNA	206	short	59	medium	1054568	pericentromeric	23041	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2081706	2082877	AT4TE09880	.	+	ATLINE1_6	L1	LINE	1171	short	129	medium	1050787	pericentromeric	25857	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	2082877	2082909	AT4TE09885	.	+	ATLINE1_4	L1	LINE	32	tiny	102	medium	1050755	pericentromeric	27028	no-CHH	no-RdDM	.	.	.	.	.
Chr4	2082909	2082950	AT4TE09890	.	+	TA11	L1	LINE	41	tiny	157	medium	1050714	pericentromeric	27060	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr4	2084204	2084784	AT4TE09895	.	+	ATREP4	Helitron	RC	580	short	832	high	1048880	pericentromeric	28355	no-CHH	no-CHH	.	.	.	.	.
Chr4	2084784	2084925	AT4TE09900	.	-	VANDAL17	MuDR	DNA	141	short	178	medium	1048739	pericentromeric	28639	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	2085985	2087671	AT4TE09905	.	-	HELITRON5	Helitron	RC	1686	short	56	medium	1045993	pericentromeric	25893	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	2087671	2090064	AT4TE09910	.	+	ATREP10D	Helitron	RC	2393	medium	1295	high	1043600	pericentromeric	23500	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2090064	2090111	AT4TE09915	.	-	ATREP10D	Helitron	RC	47	tiny	1295	high	1043553	pericentromeric	23453	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2090111	2090140	AT4TE09920	.	+	ATREP10A	Helitron	RC	29	tiny	279	high	1043524	pericentromeric	23424	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2090157	2094128	AT4TE09925	.	+	ATGP5	Gypsy	LTR	3971	medium	86	medium	1039536	pericentromeric	19436	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	2093827	2093933	AT4TE09930	.	+	ATGP5	Gypsy	LTR	106	short	86	medium	1039731	pericentromeric	19631	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2094128	2094218	AT4TE09935	.	+	ATGP5	Gypsy	LTR	90	tiny	86	medium	1039446	pericentromeric	19346	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2095092	2095400	AT4TE09940	.	+	ATDNAI27T9A	MuDR	DNA	308	short	116	medium	1038264	pericentromeric	18164	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2096388	2096575	AT4TE09945	.	+	ATDNA1T9A	MuDR	DNA	187	short	36	low	1037089	pericentromeric	16989	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	2096605	2096760	AT4TE09950	.	+	ATDNA1T9A	MuDR	DNA	155	short	36	low	1036904	pericentromeric	16804	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	2096849	2097440	AT4TE09955	.	-	LIMPET1	MuDR	DNA	591	short	116	medium	1036224	pericentromeric	16124	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2097617	2097855	AT4TE09960	.	+	ATDNAI27T9C	MuDR	DNA	238	short	108	medium	1035809	pericentromeric	15709	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2097855	2099291	AT4TE09965	.	-	ATREP11	Helitron	RC	1436	short	841	high	1034373	pericentromeric	14273	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2099291	2099321	AT4TE09970	.	-	ATREP3	Helitron	RC	30	tiny	1439	high	1034343	pericentromeric	14243	no-CHH	no-CHH	.	.	.	.	.
Chr4	2101337	2102494	AT4TE09980	.	+	ATCOPIA28	Copia	LTR	1157	short	81	medium	1031170	pericentromeric	11070	no-RdDM	no-CHH	.	.	.	.	.
Chr4	2102494	2102600	AT4TE09985	.	+	ATCOPIA27	Copia	LTR	106	short	19	low	1031064	pericentromeric	10964	no-RdDM	no-CHH	.	.	.	.	.
Chr4	2102600	2106138	AT4TE09990	.	+	ATCOPIA27	Copia	LTR	3538	medium	19	low	1027526	pericentromeric	7426	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	2107161	2110923	AT4TE09995	.	-	ATHAT3	HAT	DNA	3762	medium	23	low	1022741	pericentromeric	2641	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	2110980	2112348	AT4TE10000	.	+	VANDAL7	MuDR	DNA	1368	short	36	low	1021316	pericentromeric	1216	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	2111210	2111951	AT4TE10005	.	-	VANDAL6	MuDR	DNA	741	short	89	medium	1021713	pericentromeric	1613	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	2112348	2113332	AT4TE10010	.	-	ATREP15	Helitron	RC	984	short	1003	high	1020332	pericentromeric	232	no-RdDM	no-CHH	.	.	.	.	.
Chr4	2117113	2117280	AT4TE10030	.	-	ATREP10	Helitron	RC	167	short	63	medium	1016384	pericentromeric	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	2117280	2117776	AT4TE10035	.	+	ATHATN1	HAT	DNA	496	short	69	medium	1015888	pericentromeric	0	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	2117776	2117972	AT4TE10040	.	+	ATHATN1	HAT	DNA	196	short	69	medium	1015692	pericentromeric	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	2119593	2119663	AT4TE10045	.	+	HELITRONY1A	Helitron	RC	70	tiny	271	high	1014001	pericentromeric	1030	no-CHH	no-CHH	.	.	.	.	.
Chr4	2119663	2119756	AT4TE10050	.	-	HELITRONY1D	Helitron	RC	93	tiny	756	high	1013908	pericentromeric	1100	no-CHH	no-CHH	.	.	.	.	.
Chr4	2119756	2119904	AT4TE10055	.	+	ATREP11	Helitron	RC	148	short	841	high	1013760	pericentromeric	1193	no-CHH	no-CHH	.	.	.	.	.
Chr4	2119904	2121321	AT4TE10060	.	+	ATREP11	Helitron	RC	1417	short	841	high	1012343	pericentromeric	1341	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2121321	2121351	AT4TE10065	.	+	ATREP11	Helitron	RC	30	tiny	841	high	1012313	pericentromeric	1883	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2121351	2121397	AT4TE10070	.	+	ATREP11	Helitron	RC	46	tiny	841	high	1012267	pericentromeric	1837	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2121397	2121476	AT4TE10075	.	+	ATREP3	Helitron	RC	79	tiny	1439	high	1012188	pericentromeric	1758	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	2122010	2122472	AT4TE10080	.	-	ATHATN4	HAT	DNA	462	short	56	medium	1011192	pericentromeric	762	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2137728	2137753	AT4TE10160	.	+	ATCOPIA32B	Copia	LTR	25	tiny	10	low	995911	pericentromeric	1479	no-CHH	no-CHH	.	.	.	.	.
Chr4	2137753	2142193	AT4TE10165	.	+	ATCOPIA32B	Copia	LTR	4440	medium	10	low	991471	pericentromeric	1504	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	2142760	2142823	AT4TE10170	.	-	VANDAL9	MuDR	DNA	63	tiny	43	low	990841	pericentromeric	6511	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	2142823	2144276	AT4TE10175	.	-	VANDAL12	MuDR	DNA	1453	short	37	low	989388	pericentromeric	6574	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	2146083	2146156	AT4TE10180	.	-	VANDAL9	MuDR	DNA	73	tiny	43	low	987508	pericentromeric	9834	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	2146161	2150775	AT4TE10185	.	-	VANDAL11	MuDR	DNA	4614	medium	18	low	982889	pericentromeric	9912	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	2149585	2149858	AT4TE10190	.	-	VANDAL13	MuDR	DNA	273	short	38	low	983806	pericentromeric	13336	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	2150775	2150812	AT4TE10195	.	-	VANDAL9	MuDR	DNA	37	tiny	43	low	982852	pericentromeric	13194	no-RdDM	no-CHH	.	.	.	.	.
Chr4	2150830	2150905	AT4TE10200	.	-	VANDAL10	MuDR	DNA	75	tiny	13	low	982759	pericentromeric	13101	no-CHH	no-CHH	.	.	.	.	.
Chr4	2150907	2151791	AT4TE10205	.	+	ATHATN10	HAT	DNA	884	short	48	low	981873	pericentromeric	12215	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	2151850	2164191	AT4TE10210	.	+	VANDAL7	MuDR	DNA	12341	long	36	low	969473	pericentromeric	0	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	2155215,2155288,2155288,2157374,2157657,2159067,2159352,2164174	2156697,2156631,2156698,2158239,2158206,2158374,2160381,2165602	+,+,+,+,+,-,+,+	transcript_id-"18069e6b-1aa7-4427-9747-1ac680b9082d|5",transcript_id-"31164801-3ee6-42ab-a0cd-600bf9ac8da3|5",transcript_id-"b56f480e-5008-4ef6-a938-f950a9991903|5",transcript_id-"856a68d3-9e3e-4b3b-ad9b-40f71ebf869e|407",transcript_id-"220c923c-69cd-402a-a203-6c295765a053|4",transcript_id-"418a8879-2213-4d92-a4bb-484e28ea3e5c|10",transcript_id-"2ef59472-cb43-4ebb-9981-304bde875575|6",transcript_id-"3afa7141-e504-42e3-acf6-3d2e00d19885|5"
Chr4	2165973	2166321	AT4TE10215	.	-	ATCOPIA37	Copia	LTR	348	short	32	low	967343	pericentromeric	569	no-CHH	no-CHH	.	.	.	.	.
Chr4	2168909	2169061	AT4TE10225	.	-	ATREP1	Helitron	RC	152	short	498	high	964603	pericentromeric	929	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr4	2169061	2169736	AT4TE10230	.	+	ATN9_1	MuDR	DNA	675	short	65	medium	963928	pericentromeric	1081	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2169750	2169964	AT4TE10235	.	+	ATREP9	Helitron	RC	214	short	201	high	963700	pericentromeric	1770	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2170717	2170813	AT4TE10240	.	+	VANDAL20	MuDR	DNA	96	tiny	51	medium	962851	pericentromeric	2737	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	2172561	2174313	AT4TE10245	.	-	ATLINE1_4	L1	LINE	1752	short	102	medium	959351	pericentromeric	4581	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr4	2174330	2174353	AT4TE10250	.	-	ATLINE1_5	L1	LINE	23	tiny	91	medium	959311	pericentromeric	6350	no-RdDM	no-CHH	.	.	.	.	.
Chr4	2174764	2176015	AT4TE10255	.	-	Unassigned	.	Unassigned	1251	short	.	low	957649	pericentromeric	6784	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	2179264	2179399	AT4TE10265	.	-	ATREP4	Helitron	RC	135	short	832	high	954265	pericentromeric	11284	no-RdDM	no-CHH	.	.	.	.	.
Chr4	2179399	2180014	AT4TE10270	.	-	HELITRONY2	Helitron	RC	615	short	198	medium	953650	pericentromeric	11419	no-CHH	no-CHH	.	.	.	.	.
Chr4	2180014	2180050	AT4TE10275	.	-	ATREP4	Helitron	RC	36	tiny	832	high	953614	pericentromeric	12034	no-CHH	no-CHH	.	.	.	.	.
Chr4	2180293	2180480	AT4TE10280	.	+	RathE1_cons	.	RathE1_cons	187	short	213	high	953184	pericentromeric	12313	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2181738	2183709	AT4TE10285	.	-	ATREP10A	Helitron	RC	1971	short	279	high	949955	pericentromeric	13758	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2183709	2183776	AT4TE10290	.	-	ATREP1	Helitron	RC	67	tiny	498	high	949888	pericentromeric	15729	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	2188978	2194314	AT4TE10320	.	+	ATCOPIA93	Copia	LTR	5336	long	10	low	939350	pericentromeric	9109	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	2195603	2195656	AT4TE10325	.	+	ATCOPIA55	Copia	LTR	53	tiny	9	low	938008	pericentromeric	7767	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2198164	2203993	AT4TE10335	.	-	ATCOPIA58	Copia	LTR	5829	long	18	low	929671	pericentromeric	0	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	2199323	2198197	-	transcript_id-"b17c1909-91c3-4bb3-bbd4-3bf367e302b8|6"
Chr4	2205874	2214904	AT4TE10345	.	+	ATCOPIA44	Copia	LTR	9030	long	12	low	918760	pericentromeric	1610	no-RdDM	no-RdDM	ExpressedAndAnnotated	2211249,2211245	2208663,2208678	-,-	transcript_id-"7d87e966-4ccf-4e6c-a554-62876047538c|22",transcript_id-"416f7a20-dd1c-4a5b-b08d-549b08a3c580|39"
Chr4	2208275	2212249	AT4TE10350	.	-	ATENSPM1	En-Spm	DNA	3974	medium	30	low	921415	pericentromeric	4011	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	2211249,2211245,2208956	2208663,2208678,2208688	-,-,-	transcript_id-"7d87e966-4ccf-4e6c-a554-62876047538c|22",transcript_id-"416f7a20-dd1c-4a5b-b08d-549b08a3c580|39",transcript_id-"b3042e6c-1d1b-4191-9b5c-b34b72338567|10"
Chr4	2214904	2214961	AT4TE10360	.	+	ATCOPIA44	Copia	LTR	57	tiny	12	low	918703	pericentromeric	3417	no-RdDM	no-CHH	.	.	.	.	.
Chr4	2214961	2214994	AT4TE10365	.	+	ATCOPIA66	Copia	LTR	33	tiny	20	low	918670	pericentromeric	3384	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2216229	2216975	AT4TE10370	.	-	ATREP11	Helitron	RC	746	short	841	high	916689	pericentromeric	1403	no-CHH	no-CHH	.	.	.	.	.
Chr4	2218640	2218840	AT4TE10375	.	-	RathE3_cons	.	RathE3_cons	200	short	104	medium	914824	pericentromeric	0	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2221400	2221475	AT4TE10385	.	+	ATHATN8	HAT	DNA	75	tiny	15	low	912189	pericentromeric	287	no-CHH	no-CHH	.	.	.	.	.
Chr4	2223668	2224161	AT4TE10395	.	+	HELITRONY2	Helitron	RC	493	short	198	medium	909503	pericentromeric	1070	no-CHH	no-CHH	.	.	.	.	.
Chr4	2224161	2224274	AT4TE10400	.	-	ATREP11	Helitron	RC	113	short	841	high	909390	pericentromeric	957	no-CHH	no-CHH	.	.	.	.	.
Chr4	2231536	2231741	AT4TE10440	.	-	ATMU2	MuDR	DNA	206	short	64	medium	901923	pericentromeric	215	.	.	.	.	.	.	.
Chr4	2235063	2237772	AT4TE10450	.	-	VANDAL2N1	MuDR	DNA	2709	medium	51	medium	895892	pericentromeric	425	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	2237791	2237961	AT4TE10455	.	-	RathE3_cons	.	RathE3_cons	170	short	104	medium	895703	pericentromeric	449	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2241260	2241379	AT4TE10465	.	-	ATDNA12T3_2	.	DNA	119	short	660	high	892285	pericentromeric	493	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2244772	2244847	AT4TE10475	.	+	ATLINE1_3A	L1	LINE	75	tiny	160	medium	888817	pericentromeric	116	no-CHH	no-CHH	.	.	.	.	.
Chr4	2244847	2245084	AT4TE10480	.	+	TAG2	HAT	DNA	237	short	86	medium	888580	pericentromeric	191	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2245496	2245568	AT4TE10485	.	+	VANDAL18NA	MuDR	DNA	72	tiny	24	low	888096	pericentromeric	840	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2245568	2256834	AT4TE10490	.	+	VANDAL18	MuDR	DNA	11266	long	14	low	876830	pericentromeric	912	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	2251582	2250680	-	transcript_id-"b5489cfd-15b2-47d3-8853-578bf18ede97|9"
Chr4	2258297	2258644	AT4TE10495	.	+	ATLINE1A	L1	LINE	347	short	289	high	875020	pericentromeric	935	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2258701	2259375	AT4TE10500	.	-	ATREP1	Helitron	RC	674	short	498	high	874289	pericentromeric	204	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2259375	2259404	AT4TE10505	.	+	BRODYAGA1A	MuDR	DNA	29	tiny	586	high	874260	pericentromeric	175	no-CHH	no-RdDM	.	.	.	.	.
Chr4	2261710	2261804	AT4TE10515	.	-	RathE1_cons	.	RathE1_cons	94	tiny	213	high	871860	pericentromeric	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2262151	2262188	AT4TE10520	.	-	ATREP15	Helitron	RC	37	tiny	1003	high	871476	pericentromeric	13	no-CHH	no-CHH	.	.	.	.	.
Chr4	2262188	2263142	AT4TE10525	.	-	ATREP11	Helitron	RC	954	short	841	high	870522	pericentromeric	50	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	2265833	2266100	AT4TE10535	.	+	ATREP3	Helitron	RC	267	short	1439	high	867564	pericentromeric	3695	no-RdDM	no-CHH	.	.	.	.	.
Chr4	2266100	2267356	AT4TE10540	.	-	ATREP4	Helitron	RC	1256	short	832	high	866308	pericentromeric	3962	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	2267356	2267433	AT4TE10545	.	+	ATREP10D	Helitron	RC	77	tiny	1295	high	866231	pericentromeric	5218	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	2267669	2267918	AT4TE10550	.	-	ATHATN9	HAT	DNA	249	short	12	low	865746	pericentromeric	5531	no-RdDM	no-CHH	.	.	.	.	.
Chr4	2268044	2268203	AT4TE10555	.	-	SIMPLEHAT2	HAT	DNA	159	short	73	medium	865461	pericentromeric	5906	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	2268203	2268479	AT4TE10560	.	-	SIMPLEHAT2	HAT	DNA	276	short	73	medium	865185	pericentromeric	6065	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	2268952	2269149	AT4TE10565	.	-	ATCOPIA94	Copia	LTR	197	short	39	low	864515	pericentromeric	6814	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2269171	2269299	AT4TE10570	.	-	ATDNAI27T9C	MuDR	DNA	128	short	108	medium	864365	pericentromeric	7033	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2269454	2269744	AT4TE10575	.	-	ATHATN4	HAT	DNA	290	short	56	medium	863920	pericentromeric	7316	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	2269911	2270059	AT4TE10580	.	-	SIMPLEGUY1	Harbinger	DNA	148	short	116	medium	863605	pericentromeric	7773	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2270358	2277985	AT4TE10585	.	-	VANDAL16	MuDR	DNA	7627	long	42	low	855679	pericentromeric	8220	no-RdDM	no-RdDM	ExpressedAndAnnotated	2270524	2271091	+	transcript_id-"c600edd2-b07a-4fce-86d3-38b594b69936|3"
Chr4	2279754	2286685	AT4TE10590	.	-	ATCOPIA42	Copia	LTR	6931	long	35	low	846979	pericentromeric	3359	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	2285252	2285334	AT4TE10595	.	-	ATCOPIA58	Copia	LTR	82	tiny	18	low	848330	pericentromeric	4710	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	2286690	2288784	AT4TE10600	.	-	ATCOPIA57	Copia	LTR	2094	medium	48	low	844880	pericentromeric	1260	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	2288962	2288543	-	transcript_id-"f88ce03e-645f-4116-b089-aecd3b80006c|8"
Chr4	2288784	2288835	AT4TE10605	.	-	ATCOPIA42	Copia	LTR	51	tiny	35	low	844829	pericentromeric	1209	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	2290911	2290998	AT4TE10615	.	-	ATLINE1A	L1	LINE	87	tiny	289	high	842666	pericentromeric	0	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2292235	2292359	AT4TE10620	.	-	RathE1_cons	.	RathE1_cons	124	short	213	high	841305	pericentromeric	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	2292740	2292775	AT4TE10625	.	-	ATSINE4	.	SINE	35	tiny	98	medium	840889	pericentromeric	23	DCL3-RdDM	RDR6-RdDM	.	.	.	.	.
Chr4	2292775	2293506	AT4TE10630	.	+	ATHPOGON3	Pogo	DNA	731	short	118	medium	840158	pericentromeric	58	no-CHH	no-CHH	.	.	.	.	.
Chr4	2294900	2294922	AT4TE10635	.	-	ATREP15	Helitron	RC	22	tiny	1003	high	838742	pericentromeric	0	no-CHH	no-RdDM	.	.	.	.	.
Chr4	2294922	2295461	AT4TE10640	.	+	ATREP11A	Helitron	RC	539	short	95	medium	838203	pericentromeric	16	no-CHH	no-CHH	.	.	.	.	.
Chr4	2295461	2295497	AT4TE10645	.	+	HELITRONY1D	Helitron	RC	36	tiny	756	high	838167	pericentromeric	555	no-CHH	no-CHH	.	.	.	.	.
Chr4	2295512	2295763	AT4TE10650	.	-	ATCOPIA94	Copia	LTR	251	short	39	low	837901	pericentromeric	606	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2296029	2296296	AT4TE10655	.	-	ATHILA4B_LTR	Gypsy	LTR	267	short	143	medium	837368	pericentromeric	1123	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	2296595	2296929	AT4TE10660	.	-	ATREP15	Helitron	RC	334	short	1003	high	836735	pericentromeric	1689	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	2297364	2297561	AT4TE10665	.	-	ATDNAI27T9C	MuDR	DNA	197	short	108	medium	836103	pericentromeric	2458	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	2297561	2297589	AT4TE10670	.	-	ATCOPIA68	Copia	LTR	28	tiny	43	low	836075	pericentromeric	2655	no-CHH	no-CHH	.	.	.	.	.
Chr4	2297639	2300477	AT4TE10675	.	+	ATENSPM11	En-Spm	DNA	2838	medium	47	low	833187	pericentromeric	2733	no-RdDM	no-RdDM	ExpressedAndAnnotated	2297875	2300132	+	transcript_id-"7d80d25b-33bb-4198-920c-d6d13b10abd6|9"
Chr4	2298196	2298256	AT4TE10680	.	+	ATENSPM11	En-Spm	DNA	60	tiny	47	low	835408	pericentromeric	3290	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	2302656	2307845	AT4TE10700	.	+	ATCOPIA10	Copia	LTR	5189	long	7	low	825819	pericentromeric	1567	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2308141	2308809	AT4TE10705	.	+	ATLINE1_4	L1	LINE	668	short	102	medium	824855	pericentromeric	603	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2310705	2310762	AT4TE10715	.	+	ATREP19	.	DNA	57	tiny	189	medium	822902	pericentromeric	1134	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2310762	2313234	AT4TE10720	.	+	ATREP3	Helitron	RC	2472	medium	1439	high	820430	pericentromeric	1191	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2311804	2312437	AT4TE10725	.	-	HELITRONY1D	Helitron	RC	633	short	756	high	821227	pericentromeric	2233	no-CHH	no-CHH	.	.	.	.	.
Chr4	2313523	2314192	AT4TE10730	.	-	ATREP1	Helitron	RC	669	short	498	high	819472	pericentromeric	3952	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2315114	2315357	AT4TE10735	.	+	ATIS112A	Harbinger	DNA	243	short	173	medium	818307	pericentromeric	5543	no-CHH	no-CHH	.	.	.	.	.
Chr4	2315816	2316042	AT4TE10740	.	+	HELITRONY1D	Helitron	RC	226	short	756	high	817622	pericentromeric	6245	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	2318289	2318312	AT4TE10750	.	-	HELITRONY3	Helitron	RC	23	tiny	1399	high	815352	pericentromeric	6756	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	2318312	2318375	AT4TE10755	.	-	HELITRONY1A	Helitron	RC	63	tiny	271	high	815289	pericentromeric	6693	no-RdDM	no-CHH	.	.	.	.	.
Chr4	2318375	2320411	AT4TE10760	.	+	ATREP10D	Helitron	RC	2036	medium	1295	high	813253	pericentromeric	4657	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	2321010	2322025	AT4TE10765	.	+	ATREP5	Helitron	RC	1015	short	624	high	811639	pericentromeric	3043	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2322942	2323111	AT4TE10770	.	+	RathE2_cons	.	RathE2_cons	169	short	74	medium	810553	pericentromeric	1957	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2323369	2323821	AT4TE10775	.	+	ATLINE1_5	L1	LINE	452	short	91	medium	809843	pericentromeric	1247	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	2323775	2323170	-	transcript_id-"32f22699-1e9d-43df-b97f-58e42a2fed88|3"
Chr4	2323821	2324153	AT4TE10780	.	-	ATREP5	Helitron	RC	332	short	624	high	809511	pericentromeric	915	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	2324153	2324916	AT4TE10785	.	+	ATREP3	Helitron	RC	763	short	1439	high	808748	pericentromeric	152	no-CHH	no-CHH	.	.	.	.	.
Chr4	2330841	2330978	AT4TE10810	.	+	ATHATN1	HAT	DNA	137	short	69	medium	802686	pericentromeric	915	no-CHH	no-CHH	.	.	.	.	.
Chr4	2336930	2341447	AT4TE10840	.	+	ATREP7	Helitron	RC	4517	medium	164	medium	792217	pericentromeric	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2337231	2338168	AT4TE10845	.	-	ATREP8	Helitron	RC	937	short	75	medium	795496	pericentromeric	1557	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2338168	2338380	AT4TE10850	.	-	ATREP7	Helitron	RC	212	short	164	medium	795284	pericentromeric	1345	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2340081	2340549	AT4TE10855	.	-	BRODYAGA1	MuDR	DNA	468	short	251	high	793115	pericentromeric	32	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2340549	2340761	AT4TE10860	.	-	BRODYAGA2	MuDR	DNA	212	short	525	high	792903	pericentromeric	500	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2341447	2342104	AT4TE10865	.	+	ATREP8	Helitron	RC	657	short	75	medium	791560	pericentromeric	1398	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2342412	2342453	AT4TE10870	.	+	ATREP7	Helitron	RC	41	tiny	164	medium	791211	pericentromeric	2363	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	2344541	2344569	AT4TE10880	.	-	ATREP3	Helitron	RC	28	tiny	1439	high	789095	pericentromeric	4492	no-CHH	no-CHH	.	.	.	.	.
Chr4	2344569	2345526	AT4TE10885	.	-	ATREP11	Helitron	RC	957	short	841	high	788138	pericentromeric	4520	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2345526	2345865	AT4TE10890	.	+	HELITRONY1E	Helitron	RC	339	short	447	high	787799	pericentromeric	4895	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2345932	2346054	AT4TE10895	.	-	META1	Copia	LTR	122	short	138	medium	787610	pericentromeric	4706	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2346141	2346170	AT4TE10900	.	-	VANDAL20	MuDR	DNA	29	tiny	51	medium	787494	pericentromeric	4590	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2346170	2346552	AT4TE10905	.	-	VANDAL20	MuDR	DNA	382	short	51	medium	787112	pericentromeric	4208	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2346632	2346943	AT4TE10910	.	+	VANDAL20	MuDR	DNA	311	short	51	medium	786721	pericentromeric	3817	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2347227	2347312	AT4TE10915	.	-	VANDAL20	MuDR	DNA	86	tiny	51	medium	786352	pericentromeric	3448	.	.	.	.	.	.	.
Chr4	2347413	2347791	AT4TE10920	.	+	ATIS112A	Harbinger	DNA	378	short	173	medium	785873	pericentromeric	2969	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2347997	2348963	AT4TE10925	.	+	HARBINGER	Harbinger	DNA	966	short	90	medium	784701	pericentromeric	1797	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	2348963	2349077	AT4TE10930	.	-	ARNOLD4	MuDR	DNA	114	short	23	low	784587	pericentromeric	1683	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	2349131	2349409	AT4TE10935	.	+	ATHAT10	HAT	DNA	278	short	35	low	784255	pericentromeric	1351	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2352190	2352366	AT4TE10945	.	-	ATREP11	Helitron	RC	176	short	841	high	781298	pericentromeric	308	no-CHH	no-CHH	.	.	.	.	.
Chr4	2352366	2353004	AT4TE10950	.	-	ATREP1	Helitron	RC	638	short	498	high	780660	pericentromeric	484	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	2353004	2353047	AT4TE10955	.	+	ATREP4	Helitron	RC	43	tiny	832	high	780617	pericentromeric	941	no-CHH	no-RdDM	.	.	.	.	.
Chr4	2353047	2353262	AT4TE10960	.	-	HELITRONY2	Helitron	RC	215	short	198	medium	780402	pericentromeric	726	no-CHH	no-CHH	.	.	.	.	.
Chr4	2354656	2354829	AT4TE10965	.	-	ATLINE2	L1	LINE	173	short	138	medium	778835	pericentromeric	0	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2357510	2357639	AT4TE10975	.	+	TA11	L1	LINE	129	short	157	medium	776025	pericentromeric	2297	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	2357639	2364681	AT4TE10980	.	+	TA11	L1	LINE	7042	long	157	medium	768983	pericentromeric	2426	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	2361326	2363449	AT4TE10985	.	-	ATGP2N	Gypsy	LTR	2123	medium	54	medium	770215	pericentromeric	4153	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	2364954	2365021	AT4TE10990	.	+	VANDAL17	MuDR	DNA	67	tiny	178	medium	768643	pericentromeric	2581	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	2365021	2365471	AT4TE10995	.	-	ATHPOGON1	Pogo	DNA	450	short	174	medium	768193	pericentromeric	2131	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	2365487	2365522	AT4TE11000	.	-	HELITRON4	Helitron	RC	35	tiny	199	medium	768142	pericentromeric	2080	RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr4	2376909	2376970	AT4TE11060	.	+	ATREP15	Helitron	RC	61	tiny	1003	high	756694	pericentromeric	1774	no-CHH	no-CHH	.	.	.	.	.
Chr4	2376970	2377654	AT4TE11065	.	-	HELITRONY1D	Helitron	RC	684	short	756	high	756010	pericentromeric	1835	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2377654	2377732	AT4TE11070	.	-	HELITRONY1D	Helitron	RC	78	tiny	756	high	755932	pericentromeric	2519	no-CHH	no-CHH	.	.	.	.	.
Chr4	2377732	2377903	AT4TE11075	.	-	ATREP3	Helitron	RC	171	short	1439	high	755761	pericentromeric	2597	no-CHH	no-CHH	.	.	.	.	.
Chr4	2378506	2378619	AT4TE11080	.	-	HELITRONY1D	Helitron	RC	113	short	756	high	755045	pericentromeric	3014	no-CHH	no-CHH	.	.	.	.	.
Chr4	2380487	2380671	AT4TE11090	.	+	ATMU10	MuDR	DNA	185	short	87	medium	752993	pericentromeric	962	.	.	.	.	.	.	.
Chr4	2388222	2388831	AT4TE11130	.	+	ATHATN2	HAT	DNA	609	short	46	low	744833	pericentromeric	236	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2390867	2391037	AT4TE11140	.	-	RathE1_cons	.	RathE1_cons	170	short	213	high	742627	pericentromeric	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2393033	2393176	AT4TE11150	.	-	ATLINE1A	L1	LINE	143	short	289	high	740488	pericentromeric	146	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2393745	2393874	AT4TE11155	.	-	RathE3_cons	.	RathE3_cons	129	short	104	medium	739790	pericentromeric	858	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2397788	2397860	AT4TE11170	.	+	ATREP10D	Helitron	RC	72	tiny	1295	high	735804	pericentromeric	157	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr4	2397860	2398704	AT4TE11175	.	+	ATREP11	Helitron	RC	844	short	841	high	734960	pericentromeric	229	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2398704	2398797	AT4TE11180	.	+	ATN9_1	MuDR	DNA	93	tiny	65	medium	734867	pericentromeric	1073	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2399177	2399645	AT4TE11185	.	+	ATREP19	.	DNA	468	short	189	medium	734019	pericentromeric	1546	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2399645	2399852	AT4TE11190	.	-	HELITRONY1B	Helitron	RC	207	short	414	high	733812	pericentromeric	2014	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2399852	2400670	AT4TE11195	.	-	BRODYAGA2	MuDR	DNA	818	short	525	high	732994	pericentromeric	1256	no-RdDM	no-CHH	.	.	.	.	.
Chr4	2400671	2401096	AT4TE11200	.	-	HELITRONY1D	Helitron	RC	426	short	756	high	732568	pericentromeric	830	.	.	.	.	.	.	.
Chr4	2402565	2402757	AT4TE11205	.	+	ATTIRTA1	Tc1	DNA	192	short	95	medium	730907	pericentromeric	216	no-CHH	no-CHH	.	.	.	.	.
Chr4	2408745	2408778	AT4TE11230	.	+	ATREP7	Helitron	RC	33	tiny	164	medium	724886	pericentromeric	252	no-CHH	no-CHH	.	.	.	.	.
Chr4	2408778	2409351	AT4TE11235	.	-	ATREP4	Helitron	RC	573	short	832	high	724313	pericentromeric	285	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	2412598	2412771	AT4TE11245	.	-	RathE1_cons	.	RathE1_cons	173	short	213	high	720893	pericentromeric	91	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2413521	2414666	AT4TE11250	.	-	ATREP3	Helitron	RC	1145	short	1439	high	718998	pericentromeric	218	no-CHH	no-CHH	.	.	.	.	.
Chr4	2415124	2415186	AT4TE11255	.	+	TSCL	.	LINE?	62	tiny	81	medium	718478	pericentromeric	1821	no-CHH	no-CHH	.	.	.	.	.
Chr4	2420269	2420447	AT4TE11280	.	-	RathE3_cons	.	RathE3_cons	178	short	104	medium	713217	pericentromeric	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2422080	2422122	AT4TE11285	.	+	BRODYAGA1A	MuDR	DNA	42	tiny	586	high	711542	pericentromeric	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	2422123	2422382	AT4TE11290	.	+	DT1	Mariner	DNA	259	short	123	medium	711282	pericentromeric	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	2422382	2424145	AT4TE11295	.	+	HELITRONY1D	Helitron	RC	1763	short	756	high	709519	pericentromeric	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	2423220	2423779	AT4TE11300	.	+	TNAT1A	.	DNA	559	short	162	medium	709885	pericentromeric	384	no-CHH	no-CHH	.	.	.	.	.
Chr4	2425844	2426014	AT4TE11310	.	+	ATREP16	MuDR	DNA	170	short	47	low	707650	pericentromeric	0	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	2426929	2427255	AT4TE11315	.	+	ARNOLDY1	MuDR	DNA	326	short	237	high	706409	pericentromeric	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	2427255	2427411	AT4TE11320	.	-	ATTIRX1A	.	DNA	156	short	63	medium	706253	pericentromeric	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	2430741	2430981	AT4TE11330	.	-	BRODYAGA2	MuDR	DNA	240	short	525	high	702683	pericentromeric	138	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2431192	2431544	AT4TE11335	.	+	VANDAL12	MuDR	DNA	353	short	37	low	702120	pericentromeric	0	.	.	LowExpressed	.	.	.	.
Chr4	2431855	2432158	AT4TE11340	.	+	BRODYAGA2	MuDR	DNA	304	short	525	high	701506	pericentromeric	159	.	.	.	.	.	.	.
Chr4	2433930	2434300	AT4TE11345	.	-	ATHPOGON1	Pogo	DNA	370	short	174	medium	699364	pericentromeric	533	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2443399	2445556	AT4TE11390	.	+	VANDAL3	MuDR	DNA	2157	medium	177	medium	688108	pericentromeric	345	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	2445279	2443425	-	transcript_id-"fb0c1567-def2-4163-b1ac-892df22f86fb|3"
Chr4	2447337	2447802	AT4TE11395	.	-	ATHATN4	HAT	DNA	465	short	56	medium	685862	pericentromeric	465	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2448528	2449497	AT4TE11400	.	+	ATREP11	Helitron	RC	969	short	841	high	684167	pericentromeric	161	no-CHH	no-CHH	.	.	.	.	.
Chr4	2449497	2449530	AT4TE11405	.	+	HELITRONY2	Helitron	RC	33	tiny	198	medium	684134	pericentromeric	128	no-CHH	no-CHH	.	.	.	.	.
Chr4	2450346	2450564	AT4TE11410	.	+	ATLINE1_1	L1	LINE	218	short	61	medium	683100	pericentromeric	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2457938	2458003	AT4TE11450	.	+	VANDAL10	MuDR	DNA	66	tiny	13	low	675661	pericentromeric	447	.	.	.	.	.	.	.
Chr4	2458749	2458837	AT4TE11455	.	+	VANDAL10	MuDR	DNA	88	tiny	13	low	674827	pericentromeric	1259	no-CHH	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	2458907	2458934	AT4TE11460	.	+	VANDAL11	MuDR	DNA	27	tiny	18	low	674730	pericentromeric	1200	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	2458936	2459492	AT4TE11465	.	+	VANDAL12	MuDR	DNA	556	short	37	low	674172	pericentromeric	642	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	2459505	2459613	AT4TE11470	.	+	TSCL	.	LINE?	108	short	81	medium	674051	pericentromeric	521	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	2464308	2464847	AT4TE11500	.	+	ATHATN5	HAT	DNA	540	short	42	low	668817	pericentromeric	207	.	.	.	.	.	.	.
Chr4	2467189	2467737	AT4TE11510	.	-	ATREP4	Helitron	RC	548	short	832	high	665927	pericentromeric	86	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2470298	2471300	AT4TE11520	.	+	HELITRONY3	Helitron	RC	1002	short	1399	high	662364	pericentromeric	782	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2471300	2471349	AT4TE11525	.	-	BRODYAGA2	MuDR	DNA	49	tiny	525	high	662315	pericentromeric	733	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2471349	2471615	AT4TE11530	.	+	TSCL	.	LINE?	266	short	81	medium	662049	pericentromeric	467	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2480181	2480234	AT4TE11580	.	+	HELITRONY1B	Helitron	RC	53	tiny	414	high	653430	pericentromeric	91	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	2480234	2480982	AT4TE11585	.	+	ATREP10D	Helitron	RC	748	short	1295	high	652682	pericentromeric	144	no-CHH	no-CHH	.	.	.	.	.
Chr4	2483096	2483230	AT4TE11595	.	-	ATLINE1_3A	L1	LINE	134	short	160	medium	650434	pericentromeric	2987	no-CHH	no-CHH	.	.	.	.	.
Chr4	2484192	2484571	AT4TE11600	.	+	ATHATN3	HAT	DNA	379	short	70	medium	649093	pericentromeric	1646	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	2487296	2487557	AT4TE11610	.	+	ATREP7	Helitron	RC	261	short	164	medium	646107	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	2488482	2488650	AT4TE11615	.	-	ATENSPM6	En-Spm	DNA	168	short	151	medium	645014	pericentromeric	703	no-RdDM	no-CHH	.	.	.	.	.
Chr4	2496588	2496608	AT4TE11650	.	+	AT9NMU1	MuDR	DNA	20	tiny	45	low	637056	pericentromeric	922	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2496608	2496850	AT4TE11655	.	-	AT9NMU1	MuDR	DNA	242	short	45	low	636814	pericentromeric	942	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	2505449	2505505	AT4TE11700	.	+	ATHPOGON1	Pogo	DNA	56	tiny	174	medium	628159	pericentromeric	453	no-CHH	no-CHH	.	.	.	.	.
Chr4	2505505	2506163	AT4TE11705	.	+	ATREP10D	Helitron	RC	658	short	1295	high	627501	pericentromeric	78	no-CHH	no-CHH	ExpressedAndAnnotated	2506705	2505746	-	transcript_id-"593bc290-a2fe-4fd4-9d38-32e3e3d0bc1b|3"
Chr4	2508546	2508938	AT4TE11715	.	+	ATSINE4	.	SINE	392	short	98	medium	624726	pericentromeric	297	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2520122	2520615	AT4TE11770	.	-	ATREP1	Helitron	RC	493	short	498	high	613049	pericentromeric	198	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr4	2520615	2520852	AT4TE11775	.	-	ATREP15	Helitron	RC	237	short	1003	high	612812	pericentromeric	477	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2520852	2521014	AT4TE11780	.	+	ATREP3	Helitron	RC	162	short	1439	high	612650	pericentromeric	315	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2521569	2521987	AT4TE11785	.	-	ATREP13	Helitron	RC	419	short	106	medium	611677	pericentromeric	38	.	.	.	.	.	.	.
Chr4	2521987	2522124	AT4TE11790	.	+	HELITRONY1D	Helitron	RC	137	short	756	high	611540	pericentromeric	176	no-CHH	no-RdDM	LowExpressed	.	.	.	.
Chr4	2525737	2525815	AT4TE11800	.	-	BRODYAGA1A	MuDR	DNA	78	tiny	586	high	607849	pericentromeric	478	no-CHH	no-CHH	.	.	.	.	.
Chr4	2525815	2525840	AT4TE11805	.	-	ATHPOGON1	Pogo	DNA	25	tiny	174	medium	607824	pericentromeric	556	no-CHH	no-CHH	.	.	.	.	.
Chr4	2525840	2526154	AT4TE11810	.	-	HELITRONY1B	Helitron	RC	314	short	414	high	607510	pericentromeric	581	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	2526357	2526466	AT4TE11815	.	+	ATHPOGON1	Pogo	DNA	109	short	174	medium	607198	pericentromeric	542	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2527450	2527488	AT4TE11820	.	+	ATREP15	Helitron	RC	39	tiny	1003	high	606176	pericentromeric	87	.	.	.	.	.	.	.
Chr4	2527505	2530307	AT4TE11825	.	-	ATREP10D	Helitron	RC	2802	medium	1295	high	603357	pericentromeric	143	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	2530307	2530515	AT4TE11830	.	+	ATREP3	Helitron	RC	208	short	1439	high	603149	pericentromeric	2580	no-CHH	no-CHH	.	.	.	.	.
Chr4	2530609	2530713	AT4TE11835	.	-	ATREP10D	Helitron	RC	104	short	1295	high	602951	pericentromeric	2382	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr4	2530713	2531386	AT4TE11840	.	-	HELITRONY3	Helitron	RC	673	short	1399	high	602278	pericentromeric	1709	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2531386	2531480	AT4TE11845	.	-	BRODYAGA2	MuDR	DNA	94	tiny	525	high	602184	pericentromeric	1615	no-CHH	no-CHH	.	.	.	.	.
Chr4	2533950	2534177	AT4TE11855	.	-	ATCOPIA5	Copia	LTR	227	short	16	low	599487	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	2535192	2535867	AT4TE11860	.	-	HELITRON4	Helitron	RC	675	short	199	medium	597797	pericentromeric	36	no-CHH	no-CHH	.	.	.	.	.
Chr4	2535867	2536063	AT4TE11865	.	+	ATREP4	Helitron	RC	196	short	832	high	597601	pericentromeric	711	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr4	2543033	2543145	AT4TE11900	.	+	ATLINE1A	L1	LINE	112	short	289	high	590519	pericentromeric	366	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	2547490	2547697	AT4TE11920	.	+	ATLINE1_5	L1	LINE	207	short	91	medium	585967	pericentromeric	0	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr4	2549349	2549470	AT4TE11925	.	-	HELITRONY1B	Helitron	RC	121	short	414	high	584194	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	2549470	2549556	AT4TE11930	.	-	HELITRONY1A	Helitron	RC	86	tiny	271	high	584108	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	2549556	2549583	AT4TE11935	.	-	BRODYAGA2	MuDR	DNA	27	tiny	525	high	584081	pericentromeric	85	no-CHH	no-CHH	.	.	.	.	.
Chr4	2549583	2552876	AT4TE11940	.	-	HELITRONY1B	Helitron	RC	3293	medium	414	high	580788	pericentromeric	112	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2552876	2553516	AT4TE11945	.	+	ATREP11	Helitron	RC	640	short	841	high	580148	pericentromeric	1573	no-CHH	no-CHH	.	.	.	.	.
Chr4	2553516	2554008	AT4TE11950	.	+	ATREP2	Helitron	RC	492	short	164	medium	579656	pericentromeric	1081	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2554008	2554138	AT4TE11955	.	+	ATREP3	Helitron	RC	130	short	1439	high	579526	pericentromeric	951	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2554405	2554795	AT4TE11960	.	+	ATLINE1A	L1	LINE	391	short	289	high	578869	pericentromeric	294	.	.	.	.	.	.	.
Chr4	2555619	2555768	AT4TE11965	.	+	ATREP11	Helitron	RC	149	short	841	high	577896	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	2555768	2556147	AT4TE11970	.	+	ATTIRX1B	.	DNA	379	short	44	low	577517	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	2556147	2556578	AT4TE11975	.	-	ATREP10D	Helitron	RC	431	short	1295	high	577086	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	2557782	2557934	AT4TE11980	.	-	ATHILA7	Gypsy	LTR	152	short	134	medium	575730	pericentromeric	736	no-CHH	no-CHH	.	.	.	.	.
Chr4	2558546	2559324	AT4TE11985	.	+	ATREP15	Helitron	RC	778	short	1003	high	574340	pericentromeric	1500	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	2559324	2559402	AT4TE11990	.	+	ATREP4	Helitron	RC	78	tiny	832	high	574262	pericentromeric	2278	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2560828	2561863	AT4TE11995	.	+	ATREP10D	Helitron	RC	1035	short	1295	high	571801	pericentromeric	2089	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2562296	2562899	AT4TE12000	.	-	HELITRONY2	Helitron	RC	604	short	198	medium	570765	pericentromeric	1053	.	.	.	.	.	.	.
Chr4	2564771	2564845	AT4TE12010	.	+	ATREP5	Helitron	RC	74	tiny	624	high	568819	pericentromeric	186	no-CHH	no-CHH	.	.	.	.	.
Chr4	2564857	2566466	AT4TE12015	.	+	ATREP4	Helitron	RC	1609	short	832	high	567198	pericentromeric	272	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	2570445	2571303	AT4TE12030	.	-	BRODYAGA2	MuDR	DNA	858	short	525	high	562361	pericentromeric	109	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	2570594	2570834	AT4TE12035	.	+	DT1	Mariner	DNA	240	short	123	medium	562830	pericentromeric	578	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	2577934	2578082	AT4TE12070	.	-	ATHAT1	HAT	DNA	148	short	105	medium	555582	pericentromeric	0	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	2578317	2578464	AT4TE12075	.	-	ATHAT1	HAT	DNA	147	short	105	medium	555200	pericentromeric	343	no-CHH	no-CHH	.	.	.	.	.
Chr4	2582309	2582430	AT4TE12090	.	-	ATMUNX1	MuDR	DNA	121	short	155	medium	551234	pericentromeric	535	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2582468	2582594	AT4TE12095	.	-	ATMUNX1	MuDR	DNA	126	short	155	medium	551070	pericentromeric	694	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	2584751	2584900	AT4TE12105	.	-	VANDAL4	MuDR	DNA	149	short	102	medium	548764	pericentromeric	2977	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	2585261	2586096	AT4TE12110	.	-	ATREP15	Helitron	RC	835	short	1003	high	547568	pericentromeric	2174	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	2586096	2586118	AT4TE12115	.	+	ATREP4	Helitron	RC	22	tiny	832	high	547546	pericentromeric	2152	no-CHH	no-CHH	.	.	.	.	.
Chr4	2592230	2593169	AT4TE12140	.	-	ATHATN3	HAT	DNA	939	short	70	medium	540495	pericentromeric	230	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2592342	2592746	AT4TE12145	.	+	ATTIRX1C	.	DNA	404	short	39	low	540918	pericentromeric	342	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2593169	2593246	AT4TE12150	.	+	ARNOLDY1	MuDR	DNA	77	tiny	237	high	540418	pericentromeric	539	no-CHH	no-RdDM	.	.	.	.	.
Chr4	2594651	2594898	AT4TE12155	.	+	ATCOPIA1	Copia	LTR	248	short	11	low	538766	pericentromeric	353	.	.	.	.	.	.	.
Chr4	2594948	2595049	AT4TE12160	.	+	RathE3_cons	.	RathE3_cons	101	short	104	medium	538615	pericentromeric	651	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2595055	2595192	AT4TE12165	.	+	RathE3_cons	.	RathE3_cons	137	short	104	medium	538472	pericentromeric	758	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2596878	2597002	AT4TE12170	.	-	ATLINE1_3A	L1	LINE	124	short	160	medium	536662	pericentromeric	2581	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	2597002	2602175	AT4TE12175	.	-	ATCOPIA69	Copia	LTR	5173	long	25	low	531489	pericentromeric	825	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	2597265	2596637	-	transcript_id-"32ae7a95-babc-4dee-8da6-baec99e2c37e|7"
Chr4	2604593	2604627	AT4TE12185	.	+	BOMZH2	MuDR	DNA	34	tiny	47	low	529037	pericentromeric	417	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2604627	2605726	AT4TE12190	.	+	BOMZH1	MuDR	DNA	1099	short	28	low	527938	pericentromeric	451	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2605726	2605796	AT4TE12195	.	+	BOMZH1	MuDR	DNA	70	tiny	28	low	527868	pericentromeric	1550	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2606285	2606957	AT4TE12200	.	-	ATREP15	Helitron	RC	672	short	1003	high	526707	pericentromeric	2109	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	2608761	2609054	AT4TE12205	.	+	HELITRONY1A	Helitron	RC	293	short	271	high	524610	pericentromeric	189	no-CHH	no-CHH	.	.	.	.	.
Chr4	2612255	2612954	AT4TE12215	.	-	ATREP15	Helitron	RC	699	short	1003	high	520710	pericentromeric	274	no-RdDM	no-CHH	.	.	.	.	.
Chr4	2612954	2613053	AT4TE12220	.	-	TAG1	HAT	DNA	99	tiny	28	low	520611	pericentromeric	744	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2613117	2613217	AT4TE12225	.	-	TAG3N1	HAT	DNA	100	short	97	medium	520447	pericentromeric	580	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	2614760	2615092	AT4TE12230	.	+	HELITRONY1E	Helitron	RC	332	short	447	high	518572	pericentromeric	546	no-CHH	no-CHH	.	.	.	.	.
Chr4	2615092	2615675	AT4TE12235	.	-	ATHPOGON1	Pogo	DNA	583	short	174	medium	517989	pericentromeric	878	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2615675	2615711	AT4TE12240	.	-	ATHPOGON1	Pogo	DNA	36	tiny	174	medium	517953	pericentromeric	1461	no-CHH	no-CHH	.	.	.	.	.
Chr4	2615711	2615788	AT4TE12245	.	+	ATREP5	Helitron	RC	77	tiny	624	high	517876	pericentromeric	1497	no-CHH	no-CHH	.	.	.	.	.
Chr4	2615788	2615946	AT4TE12250	.	+	HELITRONY1E	Helitron	RC	158	short	447	high	517718	pericentromeric	1574	no-CHH	no-CHH	.	.	.	.	.
Chr4	2617850	2618010	AT4TE12260	.	+	RathE1_cons	.	RathE1_cons	160	short	213	high	515654	pericentromeric	546	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2620716	2620750	AT4TE12270	.	+	ATREP15	Helitron	RC	34	tiny	1003	high	512914	pericentromeric	926	no-CHH	no-CHH	.	.	.	.	.
Chr4	2620750	2623348	AT4TE12275	.	-	ATREP3	Helitron	RC	2598	medium	1439	high	510316	pericentromeric	960	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	2623348	2623460	AT4TE12280	.	+	HELITRONY3	Helitron	RC	112	short	1399	high	510204	pericentromeric	3055	no-CHH	no-CHH	.	.	.	.	.
Chr4	2626128	2626218	AT4TE12290	.	-	ATLINE1A	L1	LINE	90	tiny	289	high	507446	pericentromeric	297	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	2629361	2629828	AT4TE12300	.	+	ATREP10A	Helitron	RC	467	short	279	high	503836	pericentromeric	676	no-CHH	no-CHH	.	.	.	.	.
Chr4	2629828	2629892	AT4TE12305	.	-	ATREP11	Helitron	RC	64	tiny	841	high	503772	pericentromeric	1143	no-CHH	no-CHH	.	.	.	.	.
Chr4	2636209	2636419	AT4TE12330	.	+	ATLINE1_4	L1	LINE	210	short	102	medium	497245	pericentromeric	455	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2636434	2636588	AT4TE12335	.	-	ATTIRX1C	.	DNA	154	short	39	low	497076	pericentromeric	286	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr4	2639585	2641302	AT4TE12345	.	+	ATDNA2T9A	MuDR	DNA	1717	short	48	low	492362	pericentromeric	620	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2643337	2648818	AT4TE12355	.	-	ATCOPIA56	Copia	LTR	5481	long	16	low	484846	pericentromeric	864	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	2648818	2648856	AT4TE12360	.	-	ATCOPIA56	Copia	LTR	38	tiny	16	low	484808	pericentromeric	826	no-RdDM	no-CHH	.	.	.	.	.
Chr4	2649463	2649755	AT4TE12365	.	+	SIMPLEHAT2	HAT	DNA	292	short	73	medium	483909	pericentromeric	0	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	2653459	2653972	AT4TE12375	.	+	ATREP15	Helitron	RC	513	short	1003	high	479692	pericentromeric	251	no-CHH	no-CHH	.	.	.	.	.
Chr4	2653972	2654319	AT4TE12380	.	+	ATTIRX1D	.	DNA	347	short	28	low	479345	pericentromeric	764	no-CHH	no-RdDM	.	.	.	.	.
Chr4	2654319	2654362	AT4TE12385	.	+	ATREP4	Helitron	RC	43	tiny	832	high	479302	pericentromeric	1111	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr4	2654444	2655198	AT4TE12390	.	+	ATLINEIII	L1	LINE	754	short	196	medium	478466	pericentromeric	1236	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	2660801	2660916	AT4TE12420	.	+	ATREP10D	Helitron	RC	115	short	1295	high	472748	pericentromeric	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	2660916	2661515	AT4TE12425	.	-	BRODYAGA2	MuDR	DNA	599	short	525	high	472149	pericentromeric	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	2661519	2661569	AT4TE12430	.	+	ATREP10D	Helitron	RC	50	tiny	1295	high	472095	pericentromeric	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	2663475	2663732	AT4TE12440	.	+	ATDNA12T3_2	.	DNA	257	short	660	high	469932	pericentromeric	718	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2663784	2664199	AT4TE12445	.	+	ATLINE1A	L1	LINE	415	short	289	high	469465	pericentromeric	251	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2667278	2667495	AT4TE12455	.	-	ATLINE1_4	L1	LINE	218	short	102	medium	466169	pericentromeric	494	.	.	.	.	.	.	.
Chr4	2682592	2682676	AT4TE12530	.	-	ATLINE1A	L1	LINE	84	tiny	289	high	450988	pericentromeric	190	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	2688198	2688623	AT4TE12560	.	+	ATCOPIA8B	Copia	LTR	425	short	8	low	445041	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	2689457	2689495	AT4TE12565	.	+	ATMU6	MuDR	DNA	38	tiny	26	low	444169	pericentromeric	439	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2689496	2690153	AT4TE12570	.	-	ATMU6N1	MuDR	DNA	658	short	39	low	443511	pericentromeric	477	.	.	LowExpressed	.	.	.	.
Chr4	2690242	2690316	AT4TE12575	.	+	ATMU6	MuDR	DNA	74	tiny	26	low	443348	pericentromeric	1143	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr4	2690338	2690684	AT4TE12580	.	+	ATMU6N1	MuDR	DNA	346	short	39	low	442980	pericentromeric	775	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2696707	2696910	AT4TE12610	.	-	ATCOPIA17	Copia	LTR	203	short	16	low	436754	pericentromeric	1379	no-RdDM	no-CHH	.	.	.	.	.
Chr4	2697074	2714156	AT4TE12615	.	-	VANDAL2	MuDR	DNA	17082	long	43	low	419508	pericentromeric	608	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	2704161	2704968	+	transcript_id-"7524d557-abf3-4c6b-a798-953616d43035|4"
Chr4	2706821	2708966	AT4TE12620	.	+	ATGP2N	Gypsy	LTR	2145	medium	54	medium	424698	pericentromeric	5798	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	2716942	2717240	AT4TE12660	.	-	TA11	L1	LINE	298	short	157	medium	416424	pericentromeric	930	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2723117	2723307	AT4TE12690	.	-	ATREP3	Helitron	RC	190	short	1439	high	410357	pericentromeric	438	no-CHH	no-CHH	.	.	.	.	.
Chr4	2723307	2724404	AT4TE12695	.	-	ATREP9	Helitron	RC	1097	short	201	high	409260	pericentromeric	628	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	2724404	2724433	AT4TE12700	.	+	ATREP9	Helitron	RC	29	tiny	201	high	409231	pericentromeric	1256	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2731188	2731346	AT4TE12740	.	+	ATCOPIA43	Copia	LTR	158	short	29	low	402318	pericentromeric	0	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2733588	2734901	AT4TE12750	.	-	ATREP11	Helitron	RC	1313	short	841	high	398763	pericentromeric	1233	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2734918	2735014	AT4TE12755	.	+	VANDAL6	MuDR	DNA	96	tiny	89	medium	398650	pericentromeric	1120	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2735506	2735725	AT4TE12760	.	-	ATENSPM6	En-Spm	DNA	220	short	151	medium	397939	pericentromeric	409	.	.	ExpressedAndAnnotated	2735689	2735119	-	transcript_id-"d83001af-1461-424d-943d-dce939b54a2d|38"
Chr4	2754707	2755347	AT4TE12860	.	+	TNAT1A	.	DNA	640	short	162	medium	378317	pericentromeric	383	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	2755347	2756052	AT4TE12865	.	+	HELITRONY3	Helitron	RC	705	short	1399	high	377612	pericentromeric	1023	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2756052	2756240	AT4TE12870	.	-	ATREP10A	Helitron	RC	188	short	279	high	377424	pericentromeric	1033	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2756645	2756791	AT4TE12875	.	-	ATHPOGO	Pogo	DNA	146	short	25	low	376873	pericentromeric	482	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2762594	2763094	AT4TE12900	.	+	ATHATN1	HAT	DNA	500	short	69	medium	370570	pericentromeric	161	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2768641	2768870	AT4TE12930	.	+	ATLINE2	L1	LINE	229	short	138	medium	364794	pericentromeric	684	no-CHH	no-CHH	.	.	.	.	.
Chr4	2773277	2773395	AT4TE12950	.	-	TNAT2A	.	DNA	118	short	38	low	360269	pericentromeric	1025	no-CHH	no-CHH	.	.	.	.	.
Chr4	2773395	2774169	AT4TE12955	.	-	TNAT2A	.	DNA	774	short	38	low	359495	pericentromeric	1143	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2774169	2774325	AT4TE12960	.	+	ATREP10B	Helitron	RC	156	short	491	high	359339	pericentromeric	1881	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2774325	2774675	AT4TE12965	.	+	ATREP11	Helitron	RC	350	short	841	high	358989	pericentromeric	1531	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2774675	2774757	AT4TE12970	.	+	ATREP10A	Helitron	RC	82	tiny	279	high	358907	pericentromeric	1449	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2774757	2774805	AT4TE12975	.	+	HELITRONY1B	Helitron	RC	48	tiny	414	high	358859	pericentromeric	1401	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2775024	2775151	AT4TE12980	.	+	ATREP11	Helitron	RC	128	short	841	high	358513	pericentromeric	1055	.	.	.	.	.	.	.
Chr4	2775183	2775348	AT4TE12985	.	+	ATHPOGO	Pogo	DNA	165	short	25	low	358316	pericentromeric	858	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2782617	2782761	AT4TE13020	.	-	VANDAL5	MuDR	DNA	144	short	85	medium	350903	pericentromeric	3816	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	2782761	2782911	AT4TE13025	.	-	VANDAL5	MuDR	DNA	150	short	85	medium	350753	pericentromeric	3960	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	2783074	2785289	AT4TE13030	.	-	VANDAL5	MuDR	DNA	2215	medium	85	medium	348375	pericentromeric	4273	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	2786669	2788434	AT4TE13035	.	+	ATENSPM9	En-Spm	DNA	1765	short	97	medium	345230	pericentromeric	7868	no-RdDM	no-RdDM	ExpressedAndAnnotated	2785594	2788108	+	transcript_id-"f4c0cab5-73ae-4f94-8464-c23a6db2d03d|13"
Chr4	2788434	2788482	AT4TE13040	.	+	ATENSPM5	En-Spm	DNA	48	tiny	111	medium	345182	pericentromeric	9633	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr4	2788482	2788539	AT4TE13045	.	-	VANDAL5	MuDR	DNA	57	tiny	85	medium	345125	pericentromeric	9681	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	2788546	2789527	AT4TE13050	.	-	VANDAL5A	MuDR	DNA	981	short	56	medium	344137	pericentromeric	9745	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	2789603	2790004	AT4TE13055	.	-	SIMPLEHAT2	HAT	DNA	401	short	73	medium	343660	pericentromeric	10802	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	2790004	2790096	AT4TE13060	.	-	SIMPLEHAT2	HAT	DNA	92	tiny	73	medium	343568	pericentromeric	11203	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	2790150	2790373	AT4TE13065	.	-	ATHAT1	HAT	DNA	223	short	105	medium	343291	pericentromeric	11349	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	2790373	2792042	AT4TE13070	.	-	TAG2	HAT	DNA	1669	short	86	medium	341622	pericentromeric	11572	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	2793340	2793618	AT4TE13075	.	-	HELITRONY3	Helitron	RC	278	short	1399	high	340046	pericentromeric	10903	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	2793618	2794283	AT4TE13080	.	+	HELITRONY3	Helitron	RC	665	short	1399	high	339381	pericentromeric	10238	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2794638	2794718	AT4TE13085	.	-	ATMUN1	MuDR	DNA	80	tiny	107	medium	338946	pericentromeric	9803	PolIV-and-RDR6-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	2795033	2795182	AT4TE13090	.	-	HELITRONY3	Helitron	RC	149	short	1399	high	338482	pericentromeric	9339	no-CHH	no-CHH	.	.	.	.	.
Chr4	2795182	2796070	AT4TE13095	.	+	ATREP4	Helitron	RC	888	short	832	high	337594	pericentromeric	8451	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2796070	2796398	AT4TE13100	.	-	ATREP10D	Helitron	RC	328	short	1295	high	337266	pericentromeric	8123	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2796403	2796447	AT4TE13105	.	-	HELITRONY3	Helitron	RC	44	tiny	1399	high	337217	pericentromeric	8074	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr4	2796447	2800705	AT4TE13110	.	-	ARNOLDY2	MuDR	DNA	4258	medium	288	high	332959	pericentromeric	3816	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2799201	2799274	AT4TE13115	.	+	ARNOLDY2	MuDR	DNA	73	tiny	288	high	334390	pericentromeric	5247	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2799274	2800320	AT4TE13120	.	+	BRODYAGA1	MuDR	DNA	1046	short	251	high	333344	pericentromeric	4201	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2800320	2800431	AT4TE13125	.	-	BRODYAGA1A	MuDR	DNA	111	short	586	high	333233	pericentromeric	4090	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2800705	2800877	AT4TE13130	.	-	HELITRONY3	Helitron	RC	172	short	1399	high	332787	pericentromeric	3644	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	2800877	2802508	AT4TE13135	.	+	HELITRONY3	Helitron	RC	1631	short	1399	high	331156	pericentromeric	2013	no-CHH	no-CHH	.	.	.	.	.
Chr4	2802508	2802582	AT4TE13140	.	+	ATREP10B	Helitron	RC	74	tiny	491	high	331082	pericentromeric	1939	no-CHH	no-CHH	.	.	.	.	.
Chr4	2802582	2802625	AT4TE13145	.	+	BRODYAGA1A	MuDR	DNA	43	tiny	586	high	331039	pericentromeric	1896	no-CHH	no-RdDM	.	.	.	.	.
Chr4	2802625	2803778	AT4TE13150	.	+	ATMU9	MuDR	DNA	1153	short	16	low	329886	pericentromeric	743	no-RdDM	no-RdDM	ExpressedAndAnnotated	2802945	2803560	+	transcript_id-"3a0e1d5f-d8be-4697-aaff-5cc4e6e3840a|13"
Chr4	2803914	2804023	AT4TE13155	.	+	HELITRON2	Helitron	RC	109	short	194	medium	329641	pericentromeric	498	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2809282	2809451	AT4TE13180	.	-	ATLINE1A	L1	LINE	170	short	289	high	324213	pericentromeric	256	.	.	.	.	.	.	.
Chr4	2810451	2810760	AT4TE13185	.	-	ATREP10D	Helitron	RC	309	short	1295	high	322904	pericentromeric	1426	PolIV-RdDM	RDR6-RdDM	.	.	.	.	.
Chr4	2810760	2811237	AT4TE13190	.	+	ATREP6	Helitron	RC	477	short	181	medium	322427	pericentromeric	1735	no-RdDM	no-CHH	.	.	.	.	.
Chr4	2811237	2811420	AT4TE13195	.	+	ATREP19	.	DNA	183	short	189	medium	322244	pericentromeric	2212	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	2813900	2814323	AT4TE13205	.	+	HARBINGER	Harbinger	DNA	423	short	90	medium	319341	pericentromeric	2138	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2814431	2814737	AT4TE13210	.	-	ATHPOGON3	Pogo	DNA	306	short	118	medium	318927	pericentromeric	1724	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2815271	2815461	AT4TE13215	.	-	ATDNAI27T9C	MuDR	DNA	190	short	108	medium	318203	pericentromeric	1000	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2815800	2816230	AT4TE13220	.	+	HELITRONY1D	Helitron	RC	430	short	756	high	317434	pericentromeric	231	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2816819	2816882	AT4TE13225	.	-	ATLINE1A	L1	LINE	63	tiny	289	high	316782	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	2822644	2824348	AT4TE13250	.	+	VANDAL4	MuDR	DNA	1704	short	102	medium	309316	pericentromeric	1579	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	2824509	2824829	AT4TE13255	.	-	VANDAL5	MuDR	DNA	320	short	85	medium	308835	pericentromeric	1217	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	2824859	2825454	AT4TE13260	.	-	ATREP18	.	DNA	595	short	391	high	308210	pericentromeric	592	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	2826190	2826224	AT4TE13265	.	+	VANDAL4	MuDR	DNA	34	tiny	102	medium	307440	pericentromeric	0	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	2826224	2826440	AT4TE13270	.	-	VANDAL5	MuDR	DNA	216	short	85	medium	307224	pericentromeric	0	PolIV-and-RDR6-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	2828373	2829348	AT4TE13280	.	-	HELITRON1	Helitron	RC	975	short	130	medium	304316	pericentromeric	1714	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	2828586,2828586,2828586	2829147,2829224,2829292	+,+,+	transcript_id-"8fcbb641-78e1-4320-a8d5-36c79985d9d7|170",transcript_id-"e9865727-287e-493d-b8fa-41cbe5865196|36",transcript_id-"8fe1030b-c9ce-46b7-92df-cafbb99c913e|4"
Chr4	2829367	2829411	AT4TE13285	.	+	ATHILA6B	Gypsy	LTR	44	tiny	134	medium	304253	pericentromeric	2708	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	2829411	2833242	AT4TE13290	.	+	ATHILA2	Gypsy	LTR	3831	medium	413	high	300422	pericentromeric	2752	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	2828586	2830195	+	transcript_id-"2bbe880f-5577-494f-8fab-a1e4a8014390|3"
Chr4	2829845	2830652	AT4TE13295	.	+	ATHILA2	Gypsy	LTR	807	short	413	high	303012	pericentromeric	3186	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	2833250	2833358	AT4TE13305	.	+	ATHILA5	Gypsy	LTR	108	short	131	medium	300306	pericentromeric	6591	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr4	2833358	2834341	AT4TE13310	.	+	ATHILA0_I	Gypsy	LTR	983	short	138	medium	299323	pericentromeric	6699	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr4	2834344	2839569	AT4TE13315	.	+	ATHILA2	Gypsy	LTR	5225	long	413	high	294095	pericentromeric	7685	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr4	2839569	2839652	AT4TE13320	.	+	ATHILA2	Gypsy	LTR	83	tiny	413	high	294012	pericentromeric	12910	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	2839665	2846533	AT4TE13325	.	+	VANDAL4	MuDR	DNA	6868	long	102	medium	287131	pericentromeric	13006	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	2841683	2841926	AT4TE13330	.	-	VANDAL5	MuDR	DNA	243	short	85	medium	291738	pericentromeric	15024	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2845463	2845502	AT4TE13340	.	+	VANDAL5	MuDR	DNA	40	tiny	85	medium	288162	pericentromeric	18803	.	.	.	.	.	.	.
Chr4	2845502	2845598	AT4TE13345	.	+	VANDAL4	MuDR	DNA	96	tiny	102	medium	288066	pericentromeric	18843	no-RdDM	no-CHH	.	.	.	.	.
Chr4	2848207	2849456	AT4TE13355	.	+	VANDAL5	MuDR	DNA	1249	short	85	medium	284208	pericentromeric	21548	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2849456	2849570	AT4TE13360	.	+	VANDAL4	MuDR	DNA	114	short	102	medium	284094	pericentromeric	22797	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2849834	2850835	AT4TE13365	.	+	VANDAL2N1	MuDR	DNA	1001	short	51	medium	282829	pericentromeric	23175	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	2850852	2855365	AT4TE13370	.	+	ATHILA4C	Gypsy	LTR	4513	medium	206	high	278299	pericentromeric	24193	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	2855365	2857609	AT4TE13375	.	+	ATHILA0_I	Gypsy	LTR	2244	medium	138	medium	276055	pericentromeric	28706	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	2857035	2858192	+	transcript_id-"b954f6e1-18b2-47a4-b333-410b5322ae3a|4"
Chr4	2857611	2858379	AT4TE13380	.	+	ATGP5	Gypsy	LTR	768	short	86	medium	275285	pericentromeric	30952	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	2857035	2858192	+	transcript_id-"b954f6e1-18b2-47a4-b333-410b5322ae3a|4"
Chr4	2858379	2858411	AT4TE13385	.	+	ATGP5	Gypsy	LTR	32	tiny	86	medium	275253	pericentromeric	31720	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	2858411	2858719	AT4TE13390	.	+	ATHILA4	Gypsy	LTR	308	short	250	high	274945	pericentromeric	31752	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2858764	2859261	AT4TE13395	.	+	ATHILA4A	Gypsy	LTR	497	short	310	high	274403	pericentromeric	32105	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2859261	2864721	AT4TE13400	.	+	ATHILA4B_LTR	Gypsy	LTR	5460	long	143	medium	268943	pericentromeric	32602	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	2860468	2861529	AT4TE13405	.	+	VANDAL2	MuDR	DNA	1061	short	43	low	272135	pericentromeric	33809	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	2861789	2861828	AT4TE13410	.	+	BRODYAGA1A	MuDR	DNA	39	tiny	586	high	271836	pericentromeric	35130	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2861828	2862533	AT4TE13415	.	+	ATREP7	Helitron	RC	705	short	164	medium	271131	pericentromeric	35169	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	2862533	2862771	AT4TE13420	.	+	VANDAL2	MuDR	DNA	238	short	43	low	270893	pericentromeric	35874	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2863648	2863735	AT4TE13425	.	+	ATHILA8B	Gypsy	LTR	87	tiny	78	medium	269929	pericentromeric	36989	no-CHH	no-RdDM	.	.	.	.	.
Chr4	2864721	2864893	AT4TE13430	.	+	ATHILA4C	Gypsy	LTR	172	short	206	high	268771	pericentromeric	38062	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	2864893	2867756	AT4TE13435	.	+	VANDAL2	MuDR	DNA	2863	medium	43	low	265908	pericentromeric	38234	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	2866082	2866142	AT4TE13440	.	-	ATLINE1A	L1	LINE	60	tiny	289	high	267522	pericentromeric	39423	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	2866359	2867002	AT4TE13445	.	-	ATREP10D	Helitron	RC	643	short	1295	high	266662	pericentromeric	39700	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	2867756	2875954	AT4TE13450	.	-	ATGP1	Gypsy	LTR	8198	long	144	medium	257710	pericentromeric	31221	no-RdDM	no-RdDM	ExpressedAndAnnotated	2868782,2869849,2871068,2875786	2867841,2869687,2869687,2875256	-,-,-,-	transcript_id-"3390bf3e-5c5e-4cc7-99f1-07a80351db2f|4",transcript_id-"540983d6-1312-4c3f-baee-2cd350c7f46f|5",transcript_id-"1b7ab418-f1d0-493e-a295-f53ac176c087|12",transcript_id-"6c69a1b8-9d1a-4872-b244-fb8d3340b309|3"
Chr4	2875955	2876305	AT4TE13455	.	+	VANDAL2	MuDR	DNA	350	short	43	low	257359	pericentromeric	30870	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2878451	2884526	AT4TE13465	.	+	ATHILA0_I	Gypsy	LTR	6075	long	138	medium	249138	pericentromeric	22649	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	2884528	2885412	AT4TE13470	.	+	ATHILA6B	Gypsy	LTR	884	short	134	medium	248252	pericentromeric	21763	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr4	2885412	2885536	AT4TE13475	.	+	ATHILA6B	Gypsy	LTR	124	short	134	medium	248128	pericentromeric	21639	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2885603	2885767	AT4TE13480	.	+	ATHILA6A	Gypsy	LTR	164	short	247	high	247897	pericentromeric	21408	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2886332	2888605	AT4TE13485	.	+	ATHILA2	Gypsy	LTR	2273	medium	413	high	245059	pericentromeric	18570	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	2885824	2888452	+	transcript_id-"4a3de0b9-0fa3-4b28-9f07-687cf31fac14|4"
Chr4	2888605	2890101	AT4TE13490	.	-	ATHILA2	Gypsy	LTR	1496	short	413	high	243563	pericentromeric	17074	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2890106	2890360	AT4TE13495	.	+	ROMANIAT5	Copia	LTR	254	short	49	low	243304	pericentromeric	16815	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr4	2890360	2890380	AT4TE13500	.	+	ROMANIAT5	Copia	LTR	20	tiny	49	low	243284	pericentromeric	16795	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	2890380	2899567	AT4TE13505	.	+	ATHILA2	Gypsy	LTR	9187	long	413	high	234097	pericentromeric	7608	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	2899567	2900982	AT4TE13510	.	-	ATCOPIA65	Copia	LTR	1415	short	34	low	232682	pericentromeric	6193	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	2901387	2903415	AT4TE13515	.	+	Unassigned	.	Unassigned	2028	medium	.	low	230249	pericentromeric	3760	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	2903640	2903674	AT4TE13520	.	-	ATCOPIA65	Copia	LTR	34	tiny	34	low	229990	pericentromeric	3501	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	2903674	2904502	AT4TE13525	.	-	ATCOPIA45	Copia	LTR	828	short	20	low	229162	pericentromeric	2673	no-RdDM	no-CHH	ExpressedAndAnnotated	2903556	2904240	+	transcript_id-"cfa4d115-41cc-4318-8473-c3944104392e|4"
Chr4	2904563	2904616	AT4TE13530	.	+	HELITRONY1B	Helitron	RC	53	tiny	414	high	229048	pericentromeric	2559	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr4	2904617	2905320	AT4TE13535	.	+	ATREP5	Helitron	RC	703	short	624	high	228344	pericentromeric	1855	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2905320	2906850	AT4TE13540	.	+	ATREP5	Helitron	RC	1530	short	624	high	226814	pericentromeric	325	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	2908825	2909836	AT4TE13550	.	+	ATREP3	Helitron	RC	1011	short	1439	high	223828	pericentromeric	528	no-CHH	no-CHH	.	.	.	.	.
Chr4	2910712	2916492	AT4TE13555	.	-	ATLANTYS1	Gypsy	LTR	5780	long	153	medium	217172	pericentromeric	2415	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	2912666	2914643	AT4TE13560	.	+	ATGP2N	Gypsy	LTR	1977	short	54	medium	219021	pericentromeric	4369	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	2916492	2919198	AT4TE13565	.	+	ATHILA3	Gypsy	LTR	2706	medium	243	high	214466	pericentromeric	8195	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	2965366	2965772	AT4TE13810	.	+	ATTIRX1C	.	DNA	406	short	39	low	167892	pericentromeric	1622	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	2968557	2969103	AT4TE13820	.	-	ATHILA	Gypsy	LTR	546	short	198	medium	164561	pericentromeric	4813	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	2969103	2971882	AT4TE13825	.	-	ATHILA	Gypsy	LTR	2779	medium	198	medium	161782	pericentromeric	5359	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	2971966	2972004	AT4TE13830	.	-	ATHILA2	Gypsy	LTR	38	tiny	413	high	161660	pericentromeric	8222	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2972004	2972654	AT4TE13835	.	-	ATHILA	Gypsy	LTR	650	short	198	medium	161010	pericentromeric	8260	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	2972654	2972796	AT4TE13840	.	-	ATHILA6B	Gypsy	LTR	142	short	134	medium	160868	pericentromeric	8910	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	2972796	2972937	AT4TE13845	.	-	ATHILA	Gypsy	LTR	141	short	198	medium	160727	pericentromeric	9052	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	2972937	2976963	AT4TE13850	.	-	ATHILA	Gypsy	LTR	4026	medium	198	medium	156701	pericentromeric	8087	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	2981852	2984575	AT4TE13880	.	-	ATLANTYS2	Gypsy	LTR	2723	medium	179	medium	149089	pericentromeric	475	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	2986426	2986508	AT4TE13885	.	+	ATREP1	Helitron	RC	82	tiny	498	high	147156	pericentromeric	977	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	2986508	2986742	AT4TE13890	.	-	ATREP10D	Helitron	RC	234	short	1295	high	146922	pericentromeric	1059	no-CHH	no-CHH	.	.	.	.	.
Chr4	2986742	2988323	AT4TE13895	.	+	ATREP11	Helitron	RC	1581	short	841	high	145341	pericentromeric	124	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	2988323	2988466	AT4TE13900	.	+	ATREP11	Helitron	RC	143	short	841	high	145198	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	2988899	2989326	AT4TE13905	.	-	ATREP10B	Helitron	RC	427	short	491	high	144338	pericentromeric	77	no-CHH	no-CHH	.	.	.	.	.
Chr4	2989326	2989833	AT4TE13910	.	+	ATTIR16T3A	.	DNA	507	short	106	medium	143831	pericentromeric	172	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	2989833	2989875	AT4TE13915	.	+	ATTIR16T3A	.	DNA	42	tiny	106	medium	143789	pericentromeric	130	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	2989875	2990052	AT4TE13920	.	-	ATCOPIA69	Copia	LTR	177	short	25	low	143612	pericentromeric	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	2990053	2990092	AT4TE13925	.	-	ATCOPIA69	Copia	LTR	40	tiny	25	low	143572	pericentromeric	0	.	.	LowExpressed	.	.	.	.
Chr4	2990200	2990484	AT4TE13930	.	-	ATCOPIA49	Copia	LTR	284	short	34	low	143180	pericentromeric	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	2994202	2994475	AT4TE13950	.	-	ATCOPIA69	Copia	LTR	273	short	25	low	139189	pericentromeric	1584	no-CHH	no-CHH	ExpressedAndAnnotated	2994572	2994115	-	transcript_id-"5c9cc07f-8372-4995-8c1c-9fe4d1b89147|4"
Chr4	2994773	2995419	AT4TE13955	.	-	ATREP3	Helitron	RC	646	short	1439	high	138245	pericentromeric	2155	no-CHH	no-RdDM	.	.	.	.	.
Chr4	2995810	2995843	AT4TE13960	.	+	ATHILA4B_LTR	Gypsy	LTR	33	tiny	143	medium	137821	pericentromeric	3192	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	2995843	2995995	AT4TE13965	.	+	ATHILA4	Gypsy	LTR	152	short	250	high	137669	pericentromeric	3225	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr4	2995995	2996026	AT4TE13970	.	+	ATHILA4	Gypsy	LTR	31	tiny	250	high	137638	pericentromeric	3377	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	2996026	2998434	AT4TE13975	.	+	ATHILA4	Gypsy	LTR	2408	medium	250	high	135230	pericentromeric	3229	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	2998434	3000865	AT4TE13980	.	+	ATHILA4A	Gypsy	LTR	2431	medium	310	high	132799	pericentromeric	798	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	3001177	3001566	AT4TE13985	.	-	ATGP10	Gypsy	LTR	389	short	165	medium	132098	pericentromeric	97	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	3001493	3001327	-	transcript_id-"6ae827c3-1c46-44a7-bdb9-a6e59ce4f9bb|3"
Chr4	3003290	3004460	AT4TE13990	.	-	ATHILA6A	Gypsy	LTR	1170	short	247	high	129204	pericentromeric	879	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr4	3003855	3003899	AT4TE13995	.	-	ATHILA6A	Gypsy	LTR	44	tiny	247	high	129765	pericentromeric	1444	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	3004460	3007472	AT4TE14000	.	-	ATHILA6B	Gypsy	LTR	3012	medium	134	medium	126192	pericentromeric	2049	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3007472	3010869	AT4TE14005	.	+	ATHILA3	Gypsy	LTR	3397	medium	243	high	122795	pericentromeric	5061	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	3009310	3009523	AT4TE14010	.	+	ATHILA3	Gypsy	LTR	213	short	243	high	124141	pericentromeric	6899	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	3010869	3011169	AT4TE14015	.	+	ATHILA3	Gypsy	LTR	300	short	243	high	122495	pericentromeric	8458	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3011169	3011262	AT4TE14020	.	+	ATHILA3	Gypsy	LTR	93	tiny	243	high	122402	pericentromeric	8758	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3011262	3011338	AT4TE14025	.	+	ATHILA3	Gypsy	LTR	76	tiny	243	high	122326	pericentromeric	8851	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3011338	3012221	AT4TE14030	.	+	ATHILA3	Gypsy	LTR	883	short	243	high	121443	pericentromeric	8927	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3013165	3024926	AT4TE14035	.	+	ATHILA6A	Gypsy	LTR	11761	long	247	high	108738	pericentromeric	10754	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	3022183	3022332	+	transcript_id-"b0ca0164-21f7-48eb-9eb4-91b024436c09|3"
Chr4	3030223	3030444	AT4TE14060	.	+	ATHILA2	Gypsy	LTR	221	short	413	high	103220	pericentromeric	27812	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3030444	3033315	AT4TE14065	.	+	ATHILA4A	Gypsy	LTR	2871	medium	310	high	100349	pericentromeric	28033	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3033315	3033907	AT4TE14070	.	+	ATHILA4A	Gypsy	LTR	592	short	310	high	99757	pericentromeric	30904	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3036135	3036265	AT4TE14080	.	-	ATGP2N	Gypsy	LTR	130	short	54	medium	97399	pericentromeric	31237	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3036265	3038486	AT4TE14085	.	-	ATENSPM10	En-Spm	DNA	2221	medium	81	medium	95178	pericentromeric	29016	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	3047813	3051355	AT4TE14130	.	-	ATHILA3	Gypsy	LTR	3542	medium	243	high	82309	pericentromeric	16147	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	3049166,3050741,3050727	3048726,3049499,3050152	-,-,-	transcript_id-"d56a0be0-ec52-47d9-8f9d-a1c72dbcb887|4",transcript_id-"7a7ebcbd-931c-4046-81d6-6fe4255c9abc|4",transcript_id-"fcb2e7af-87e5-4d73-82a6-27f07ad68c6d|6"
Chr4	3051355	3053047	AT4TE14135	.	-	ATHILA5	Gypsy	LTR	1692	short	131	medium	80617	pericentromeric	14455	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	3053047	3053223	AT4TE14140	.	-	ATHILA0_I	Gypsy	LTR	176	short	138	medium	80441	pericentromeric	14279	no-RdDM	no-CHH	.	.	.	.	.
Chr4	3054741	3055303	AT4TE14145	.	-	ATDNA12T3_2	.	DNA	562	short	660	high	78361	pericentromeric	12199	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	3055737	3055801	AT4TE14150	.	-	ATDNA12T3_2	.	DNA	64	tiny	660	high	77863	pericentromeric	11701	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	3056235	3056299	AT4TE14155	.	-	ATDNA12T3_2	.	DNA	64	tiny	660	high	77365	pericentromeric	11203	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	3057201	3057264	AT4TE14160	.	-	ATDNA12T3_2	.	DNA	64	tiny	660	high	76400	pericentromeric	10238	.	.	.	.	.	.	.
Chr4	3061184	3061246	AT4TE14180	.	-	ATDNA12T3_2	.	DNA	62	tiny	660	high	72418	pericentromeric	6256	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	3061550	3065198	AT4TE14185	.	-	ATLANTYS1	Gypsy	LTR	3648	medium	153	medium	68466	pericentromeric	2304	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	3065198	3065483	AT4TE14190	.	+	ATGP10	Gypsy	LTR	285	short	165	medium	68181	pericentromeric	2019	no-RdDM	no-CHH	.	.	.	.	.
Chr4	3066419	3066508	AT4TE14195	.	+	ATGP10	Gypsy	LTR	89	tiny	165	medium	67156	pericentromeric	994	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	3066734	3067393	AT4TE14200	.	+	ATGP10	Gypsy	LTR	659	short	165	medium	66271	pericentromeric	109	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr4	3070372	3071190	AT4TE14210	.	+	ATGP10	Gypsy	LTR	818	short	165	medium	62474	pericentromeric	1603	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	3071195	3072810	AT4TE14215	.	-	ATLANTYS1	Gypsy	LTR	1615	short	153	medium	60854	pericentromeric	2426	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	3072810	3074368	AT4TE14220	.	+	ATHILA0_I	Gypsy	LTR	1558	short	138	medium	59296	pericentromeric	4041	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3074386	3076419	AT4TE14225	.	-	ATHILA3	Gypsy	LTR	2033	medium	243	high	57245	pericentromeric	5617	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	3076419	3076907	AT4TE14230	.	-	ATHILA5	Gypsy	LTR	488	short	131	medium	56757	pericentromeric	7650	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	3076937	3076990	AT4TE14235	.	-	ATHILA5	Gypsy	LTR	53	tiny	131	medium	56674	pericentromeric	8168	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	3076990	3078446	AT4TE14240	.	-	ATHILA5	Gypsy	LTR	1456	short	131	medium	55218	pericentromeric	8221	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	3078446	3083897	AT4TE14245	.	-	ATHILA0_I	Gypsy	LTR	5451	long	138	medium	49767	pericentromeric	9677	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	3078701	3078732	AT4TE14250	.	-	ATHILA3	Gypsy	LTR	31	tiny	243	high	54932	pericentromeric	9932	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3078732	3080453	AT4TE14255	.	-	ATHILA3	Gypsy	LTR	1721	short	243	high	53211	pericentromeric	9963	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3083897	3084292	AT4TE14265	.	+	ATHILA3	Gypsy	LTR	395	short	243	high	49372	pericentromeric	15128	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	3084292	3084324	AT4TE14270	.	+	ATHILA3	Gypsy	LTR	32	tiny	243	high	49340	pericentromeric	15523	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	3084326	3084499	AT4TE14275	.	-	ATENSPM4	En-Spm	DNA	173	short	50	medium	49165	pericentromeric	15557	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	3084508	3084568	AT4TE14280	.	+	ATHILA4A	Gypsy	LTR	60	tiny	310	high	49096	pericentromeric	15739	RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	3084568	3086716	AT4TE14285	.	+	ATHILA4	Gypsy	LTR	2148	medium	250	high	46948	pericentromeric	15799	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr4	3086716	3087018	AT4TE14290	.	+	ATHILA2	Gypsy	LTR	302	short	413	high	46646	pericentromeric	17947	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	3087018	3097887	AT4TE14295	.	-	ATHILA2	Gypsy	LTR	10869	long	413	high	35777	pericentromeric	18249	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	3097887	3097972	AT4TE14300	.	-	ATHILA2	Gypsy	LTR	85	tiny	413	high	35692	pericentromeric	18921	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	3097972	3099355	AT4TE14305	.	+	ATHILA2	Gypsy	LTR	1383	short	413	high	34309	pericentromeric	17538	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	3099356	3099945	AT4TE14310	.	+	ATHILA4	Gypsy	LTR	589	short	250	high	33719	pericentromeric	16948	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3099971	3100251	AT4TE14315	.	+	ATHILA4	Gypsy	LTR	280	short	250	high	33413	pericentromeric	16642	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	3100362	3100997	AT4TE14320	.	-	ATGP8	Gypsy	LTR	635	short	92	medium	32667	pericentromeric	15896	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3102058	3103313	AT4TE14325	.	+	ATHILA4	Gypsy	LTR	1255	short	250	high	30351	pericentromeric	13580	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3103410	3111525	AT4TE14330	.	-	ATLANTYS1	Gypsy	LTR	8115	long	153	medium	22139	pericentromeric	5368	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3111557	3111874	AT4TE14335	.	+	ATHILA4A	Gypsy	LTR	317	short	310	high	21790	pericentromeric	5019	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	3111925	3112133	AT4TE14340	.	-	ATENSPM4	En-Spm	DNA	208	short	50	medium	21531	pericentromeric	4760	RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	3112298	3113570	AT4TE14345	.	-	ATHILA4	Gypsy	LTR	1272	short	250	high	20094	pericentromeric	3323	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	3113570	3113591	AT4TE14350	.	-	ATHPOGON1	Pogo	DNA	21	tiny	174	medium	20073	pericentromeric	3302	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	3114504	3114696	AT4TE14355	.	-	ATENSPM4	En-Spm	DNA	192	short	50	medium	18968	pericentromeric	2197	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	3114814	3114963	AT4TE14360	.	-	ATHPOGON1	Pogo	DNA	149	short	174	medium	18701	pericentromeric	1930	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	3117517	3121723	AT4TE14370	.	-	ATLANTYS1	Gypsy	LTR	4206	medium	153	medium	11941	pericentromeric	183	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3119103	3119149	AT4TE14375	.	-	ATLANTYS2	Gypsy	LTR	46	tiny	179	medium	14515	pericentromeric	1769	no-CHH	RDR6-RdDM	.	.	.	.	.
Chr4	3122101	3122710	AT4TE14385	.	-	TAT1_ATH	Gypsy	LTR	609	short	87	medium	10954	pericentromeric	4767	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	3124010	3124142	AT4TE14390	.	-	ATENSPM4	En-Spm	DNA	132	short	50	medium	9522	pericentromeric	6676	no-RdDM	no-CHH	.	.	.	.	.
Chr4	3124142	3124318	AT4TE14395	.	-	ATENSPM4	En-Spm	DNA	176	short	50	medium	9346	pericentromeric	6808	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3124736	3124854	AT4TE14400	.	-	VANDAL3	MuDR	DNA	118	short	177	medium	8810	pericentromeric	7402	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr4	3124854	3125005	AT4TE14405	.	-	ATHPOGON1	Pogo	DNA	151	short	174	medium	8659	pericentromeric	7520	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3125274	3129084	AT4TE14410	.	+	ATHILA2	Gypsy	LTR	3810	medium	413	high	4580	pericentromeric	7940	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	3129084	3129108	AT4TE14415	.	+	ATHILA2	Gypsy	LTR	24	tiny	413	high	4556	pericentromeric	11750	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	3129108	3129226	AT4TE14420	.	+	ATHILA	Gypsy	LTR	118	short	198	medium	4438	pericentromeric	11774	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	3131267	3131333	AT4TE14430	.	-	ARNOLDY1	MuDR	DNA	66	tiny	237	high	2331	pericentromeric	13933	no-RdDM	no-CHH	.	.	.	.	.
Chr4	3131333	3132886	AT4TE14435	.	+	ARNOLDY1	MuDR	DNA	1553	short	237	high	778	pericentromeric	13999	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	3132900	3133731	AT4TE14440	.	+	HELITRONY3	Helitron	RC	832	short	1399	high	765	pericentromeric	15565	.	.	.	.	.	.	.
Chr4	3133733	3138654	AT4TE14445	.	+	ATGP2N	Gypsy	LTR	4921	medium	54	medium	59	pericentromeric	16399	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	3138661	3138782	AT4TE14450	.	-	HELITRONY3A	Helitron	RC	121	short	49	low	4987	pericentromeric	21327	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr4	3140157	3140179	AT4TE14455	.	-	ATLINE1_4	L1	LINE	22	tiny	102	medium	6483	pericentromeric	22823	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr4	3140179	3142994	AT4TE14460	.	-	TA11	L1	LINE	2815	medium	157	medium	6505	pericentromeric	22845	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	3142994	3143028	AT4TE14465	.	-	ATLINE1_6	L1	LINE	34	tiny	129	medium	9320	pericentromeric	25660	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	3145516	3145629	AT4TE14475	.	-	HELITRONY3A	Helitron	RC	113	short	49	low	11842	pericentromeric	28182	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr4	3148333	3148354	AT4TE14485	.	+	ATHILA4C	Gypsy	LTR	21	tiny	206	high	14659	pericentromeric	30999	PolIV-and-RDR6-RdDM	RDR6-RdDM	.	.	.	.	.
Chr4	3148354	3150596	AT4TE14490	.	+	ATHILA4	Gypsy	LTR	2242	medium	250	high	14680	pericentromeric	31020	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	3151453	3151916	AT4TE14495	.	-	HELITRON3	Helitron	RC	463	short	53	medium	17779	pericentromeric	34119	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	3151916	3156470	AT4TE14500	.	-	ATHILA3	Gypsy	LTR	4554	medium	243	high	18242	pericentromeric	34582	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	3152794	3152077	-	transcript_id-"f6640bd5-27a0-4fac-b4b5-a643b4a94e89|3"
Chr4	3156470	3157716	AT4TE14505	.	-	ATHILA4A	Gypsy	LTR	1246	short	310	high	22796	pericentromeric	39136	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3157716	3158612	AT4TE14510	.	-	ATHILA4	Gypsy	LTR	896	short	250	high	24042	pericentromeric	40382	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	3158612	3159536	AT4TE14515	.	-	ATHILA0_I	Gypsy	LTR	924	short	138	medium	24938	pericentromeric	41278	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	3159536	3170984	AT4TE14520	.	-	VANDAL3	MuDR	DNA	11448	long	177	medium	25862	pericentromeric	42202	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	3159723	3161375	+	transcript_id-"f8dc7196-deeb-42ba-9d1b-4f417643a976|3"
Chr4	3170999	3172254	AT4TE14525	.	+	ATHILA4C	Gypsy	LTR	1255	short	206	high	37325	pericentromeric	53665	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	3172255	3173298	AT4TE14530	.	+	ATENSPM7	En-Spm	DNA	1043	short	74	medium	38581	pericentromeric	54921	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr4	3173301	3173942	AT4TE14535	.	-	ATHILA2	Gypsy	LTR	641	short	413	high	39627	pericentromeric	55967	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	3173942	3184236	AT4TE14540	.	-	ATHILA2	Gypsy	LTR	10294	long	413	high	40268	pericentromeric	56608	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	3184249	3185466	AT4TE14545	.	+	ATENSPM3	En-Spm	DNA	1217	short	98	medium	50575	pericentromeric	66915	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	3185467	3185985	AT4TE14550	.	+	ATGP10	Gypsy	LTR	518	short	165	medium	51793	pericentromeric	68133	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3185985	3188829	AT4TE14555	.	+	ATGP10	Gypsy	LTR	2844	medium	165	medium	52311	pericentromeric	68651	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3188829	3188854	AT4TE14560	.	+	ATHILA2	Gypsy	LTR	25	tiny	413	high	55155	pericentromeric	71495	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3188854	3190047	AT4TE14565	.	+	ATHILA4	Gypsy	LTR	1193	short	250	high	55180	pericentromeric	71520	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3190071	3191621	AT4TE14570	.	+	ATHILA4A	Gypsy	LTR	1550	short	310	high	56397	pericentromeric	72737	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3191625	3191781	AT4TE14575	.	+	ATHILA4B_LTR	Gypsy	LTR	156	short	143	medium	57951	pericentromeric	74291	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	3191781	3193883	AT4TE14580	.	+	ATGP10	Gypsy	LTR	2102	medium	165	medium	58107	pericentromeric	74447	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3194054	3194370	AT4TE14585	.	-	ATGP10	Gypsy	LTR	316	short	165	medium	60380	pericentromeric	76720	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3194652	3194717	AT4TE14590	.	-	ATREP18	.	DNA	65	tiny	391	high	60978	pericentromeric	77318	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	3194717	3195398	AT4TE14595	.	-	ATREP18	.	DNA	681	short	391	high	61043	pericentromeric	77383	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr4	3195398	3195470	AT4TE14600	.	-	ATREP18	.	DNA	72	tiny	391	high	61724	pericentromeric	78064	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	3195470	3195902	AT4TE14605	.	-	ATREP18	.	DNA	432	short	391	high	61796	pericentromeric	78136	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	3196568	3197538	AT4TE14610	.	-	ATREP18	.	DNA	970	short	391	high	62894	pericentromeric	79234	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3197545	3198164	AT4TE14615	.	-	ATREP18	.	DNA	619	short	391	high	63871	pericentromeric	80211	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3198165	3198227	AT4TE14620	.	-	ATREP18	.	DNA	63	tiny	391	high	64490	pericentromeric	80830	.	.	.	.	.	.	.
Chr4	3199109	3199321	AT4TE14625	.	-	ATREP18	.	DNA	213	short	391	high	65434	pericentromeric	81774	.	.	.	.	.	.	.
Chr4	3199321	3199531	AT4TE14630	.	-	ATREP18	.	DNA	210	short	391	high	65647	pericentromeric	81987	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3199531	3199826	AT4TE14635	.	-	ATREP18	.	DNA	295	short	391	high	65857	pericentromeric	82197	no-RdDM	no-CHH	.	.	.	.	.
Chr4	3199826	3201028	AT4TE14640	.	-	ATREP18	.	DNA	1202	short	391	high	66152	pericentromeric	82492	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3201737	3202312	AT4TE14645	.	-	ATREP18	.	DNA	575	short	391	high	68063	pericentromeric	84403	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3202313	3203503	AT4TE14650	.	-	ATREP18	.	DNA	1191	short	391	high	68638	pericentromeric	84978	.	.	.	.	.	.	.
Chr4	3204157	3204219	AT4TE14655	.	-	ATREP18	.	DNA	62	tiny	391	high	70483	pericentromeric	86823	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3204219	3206072	AT4TE14660	.	-	ATREP18	.	DNA	1853	short	391	high	70545	pericentromeric	86885	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3206768	3207751	AT4TE14665	.	-	ATREP18	.	DNA	983	short	391	high	73094	pericentromeric	89434	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3207752	3208212	AT4TE14670	.	-	ATREP18	.	DNA	461	short	391	high	74077	pericentromeric	90417	.	.	.	.	.	.	.
Chr4	3208213	3208644	AT4TE14675	.	-	ATREP18	.	DNA	432	short	391	high	74538	pericentromeric	90878	.	.	.	.	.	.	.
Chr4	3209310	3209341	AT4TE14680	.	-	ATREP18	.	DNA	32	tiny	391	high	75635	pericentromeric	91975	.	.	.	.	.	.	.
Chr4	3209342	3211217	AT4TE14685	.	-	ATREP18	.	DNA	1876	short	391	high	75667	pericentromeric	92007	.	.	.	.	.	.	.
Chr4	3211882	3213790	AT4TE14690	.	-	ATREP18	.	DNA	1908	short	391	high	78208	pericentromeric	94548	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3214449	3214482	AT4TE14695	.	-	ATREP18	.	DNA	34	tiny	391	high	80774	pericentromeric	97114	.	.	.	.	.	.	.
Chr4	3214482	3215396	AT4TE14700	.	-	ATREP18	.	DNA	914	short	391	high	80808	pericentromeric	97148	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3215397	3215836	AT4TE14705	.	-	ATREP18	.	DNA	440	short	391	high	81722	pericentromeric	98062	.	.	.	.	.	.	.
Chr4	3215837	3216087	AT4TE14710	.	-	ATREP18	.	DNA	251	short	391	high	82162	pericentromeric	98502	.	.	.	.	.	.	.
Chr4	3217002	3217910	AT4TE14715	.	-	ATREP18	.	DNA	908	short	391	high	83328	pericentromeric	99668	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3217911	3217943	AT4TE14720	.	-	ATREP18	.	DNA	33	tiny	391	high	84236	pericentromeric	100358	.	.	.	.	.	.	.
Chr4	3218261	3218288	AT4TE14725	.	-	ATREP18	.	DNA	27	tiny	391	high	84587	pericentromeric	100013	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3218288	3218864	AT4TE14730	.	-	ATREP18	.	DNA	576	short	391	high	84614	pericentromeric	99437	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3219481	3220027	AT4TE14735	.	-	ATREP18	.	DNA	546	short	391	high	85807	pericentromeric	98274	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	3220027	3221234	AT4TE14740	.	-	ATREP18	.	DNA	1207	short	391	high	86353	pericentromeric	97067	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3221886	3222699	AT4TE14745	.	-	ATREP18	.	DNA	813	short	391	high	88212	pericentromeric	95602	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3222940	3222960	AT4TE14750	.	-	ATREP18	.	DNA	21	tiny	391	high	89265	pericentromeric	95341	.	.	.	.	.	.	.
Chr4	3222961	3222980	AT4TE14755	.	-	ATREP18	.	DNA	20	tiny	391	high	89286	pericentromeric	95321	.	.	.	.	.	.	.
Chr4	3222980	3224650	AT4TE14760	.	-	ATREP18	.	DNA	1670	short	391	high	89306	pericentromeric	93651	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3225276	3226268	AT4TE14765	.	-	ATREP18	.	DNA	992	short	391	high	91602	pericentromeric	92033	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3226268	3226889	AT4TE14770	.	-	ATREP18	.	DNA	621	short	391	high	92594	pericentromeric	91412	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	3226890	3226952	AT4TE14775	.	-	ATREP18	.	DNA	63	tiny	391	high	93215	pericentromeric	91349	.	.	.	.	.	.	.
Chr4	3227828	3229519	AT4TE14780	.	-	ATREP18	.	DNA	1691	short	391	high	94154	pericentromeric	88782	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3229254	3229285	AT4TE14785	.	-	ATREP18	.	DNA	32	tiny	391	high	95579	pericentromeric	89016	.	.	.	.	.	.	.
Chr4	3229286	3229404	AT4TE14790	.	-	ATREP18	.	DNA	119	short	391	high	95611	pericentromeric	88897	.	.	.	.	.	.	.
Chr4	3230140	3230202	AT4TE14795	.	-	ATREP18	.	DNA	62	tiny	391	high	96466	pericentromeric	88099	no-RdDM	no-CHH	.	.	.	.	.
Chr4	3230202	3231793	AT4TE14800	.	-	ATREP18	.	DNA	1591	short	391	high	96528	pericentromeric	86508	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3232670	3232690	AT4TE14805	.	-	ATREP18	.	DNA	21	tiny	391	high	98995	pericentromeric	85611	.	.	.	.	.	.	.
Chr4	3232691	3232727	AT4TE14810	.	-	ATREP18	.	DNA	37	tiny	391	high	99016	pericentromeric	85574	.	.	.	.	.	.	.
Chr4	3232727	3236604	AT4TE14815	.	-	ATREP18	.	DNA	3877	medium	391	high	99053	pericentromeric	81697	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3233082	3233382	AT4TE14820	.	-	ATREP18	.	DNA	300	short	391	high	99408	pericentromeric	84919	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3233382	3234587	AT4TE14825	.	-	ATREP18	.	DNA	1205	short	391	high	99708	pericentromeric	83714	no-RdDM	no-CHH	.	.	.	.	.
Chr4	3235263	3235303	AT4TE14830	.	-	ATREP18	.	DNA	41	tiny	391	high	101588	pericentromeric	82998	.	.	.	.	.	.	.
Chr4	3236605	3236922	AT4TE14835	.	-	ATREP18	.	DNA	318	short	391	high	102930	pericentromeric	81379	.	.	.	.	.	.	.
Chr4	3237538	3240365	AT4TE14840	.	-	ATREP18	.	DNA	2827	medium	391	high	103864	pericentromeric	77936	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3240366	3241093	AT4TE14845	.	-	ATREP18	.	DNA	728	short	391	high	106691	pericentromeric	77208	.	.	.	.	.	.	.
Chr4	3241787	3244702	AT4TE14850	.	-	ATREP18	.	DNA	2915	medium	391	high	108113	pericentromeric	73599	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3243133	3243658	AT4TE14855	.	-	ATREP18	.	DNA	525	short	391	high	109459	pericentromeric	74643	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	3244319	3245684	AT4TE14860	.	-	ATREP18	.	DNA	1365	short	391	high	110645	pericentromeric	72617	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	3245685	3245990	AT4TE14865	.	-	ATREP18	.	DNA	306	short	391	high	112010	pericentromeric	72311	.	.	.	.	.	.	.
Chr4	3246685	3247072	AT4TE14870	.	-	ATREP18	.	DNA	388	short	391	high	113010	pericentromeric	71229	.	.	.	.	.	.	.
Chr4	3247073	3248030	AT4TE14875	.	-	ATREP18	.	DNA	958	short	391	high	113398	pericentromeric	70271	.	.	.	.	.	.	.
Chr4	3248030	3248291	AT4TE14880	.	-	ATREP18	.	DNA	261	short	391	high	114356	pericentromeric	70010	DCL3-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	3249189	3249226	AT4TE14885	.	-	ATREP18	.	DNA	38	tiny	391	high	115514	pericentromeric	69075	.	.	.	.	.	.	.
Chr4	3249226	3250544	AT4TE14890	.	-	ATREP18	.	DNA	1318	short	391	high	115552	pericentromeric	67757	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3250544	3253118	AT4TE14895	.	-	ATREP18	.	DNA	2574	medium	391	high	116870	pericentromeric	65183	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3251479	3251507	AT4TE14900	.	-	ATREP18	.	DNA	29	tiny	391	high	117804	pericentromeric	66794	.	.	.	.	.	.	.
Chr4	3251507	3251926	AT4TE14905	.	-	ATREP18	.	DNA	419	short	391	high	117833	pericentromeric	66375	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3251927	3251950	AT4TE14910	.	-	ATREP18	.	DNA	24	tiny	391	high	118252	pericentromeric	66351	.	.	.	.	.	.	.
Chr4	3251951	3252227	AT4TE14915	.	-	ATREP18	.	DNA	277	short	391	high	118276	pericentromeric	66074	.	.	.	.	.	.	.
Chr4	3253123	3253145	AT4TE14920	.	-	ATREP18	.	DNA	23	tiny	391	high	119448	pericentromeric	65156	.	.	.	.	.	.	.
Chr4	3254029	3254088	AT4TE14925	.	-	ATREP18	.	DNA	60	tiny	391	high	120354	pericentromeric	64213	.	.	.	.	.	.	.
Chr4	3254088	3255653	AT4TE14930	.	-	ATREP18	.	DNA	1565	short	391	high	120414	pericentromeric	62648	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3255658	3255680	AT4TE14935	.	-	ATREP18	.	DNA	23	tiny	391	high	121983	pericentromeric	62621	.	.	.	.	.	.	.
Chr4	3256564	3256613	AT4TE14940	.	-	ATREP18	.	DNA	50	tiny	391	high	122889	pericentromeric	61688	.	.	.	.	.	.	.
Chr4	3256613	3258473	AT4TE14945	.	-	ATREP18	.	DNA	1860	short	391	high	122939	pericentromeric	59828	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3257100	3257535	AT4TE14950	.	-	ATREP18	.	DNA	436	short	391	high	123425	pericentromeric	60766	.	.	.	.	.	.	.
Chr4	3259134	3259154	AT4TE14955	.	-	ATREP18	.	DNA	20	tiny	391	high	125460	pericentromeric	59147	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	3259154	3259335	AT4TE14960	.	-	ATREP18	.	DNA	181	short	391	high	125480	pericentromeric	58966	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3259335	3260203	AT4TE14965	.	-	ATREP18	.	DNA	868	short	391	high	125661	pericentromeric	58098	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3260203	3262152	AT4TE14970	.	-	ATREP18	.	DNA	1949	short	391	high	126529	pericentromeric	56149	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3261130	3261301	AT4TE14975	.	-	ATGP2	Gypsy	LTR	171	short	48	low	127456	pericentromeric	57000	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3263180	3263244	AT4TE14985	.	+	ATHILA2	Gypsy	LTR	64	tiny	413	high	129506	pericentromeric	55057	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3263244	3265514	AT4TE14990	.	+	ATHILA2	Gypsy	LTR	2270	medium	413	high	129570	pericentromeric	52787	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	3264335	3266196	+	transcript_id-"9c200014-b28d-4a0f-86ef-caec325ff137|4"
Chr4	3263584	3264171	AT4TE14995	.	+	ATHILA2	Gypsy	LTR	587	short	413	high	129910	pericentromeric	54130	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr4	3265514	3266367	AT4TE15000	.	-	ATHILA4C	Gypsy	LTR	853	short	206	high	131840	pericentromeric	51934	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	3266372	3288504	AT4TE15005	.	-	ATHILA3	Gypsy	LTR	22132	long	243	high	132698	pericentromeric	29797	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	3268607	3270089	AT4TE15010	.	-	ATHILA2	Gypsy	LTR	1482	short	413	high	134933	pericentromeric	48212	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	3270093	3273530	AT4TE15015	.	+	ATHILA2	Gypsy	LTR	3437	medium	413	high	136419	pericentromeric	44771	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	3273530	3273948	AT4TE15020	.	-	ATHILA2	Gypsy	LTR	418	short	413	high	139856	pericentromeric	44353	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3273948	3285542	AT4TE15025	.	-	ATHILA0_I	Gypsy	LTR	11594	long	138	medium	140274	pericentromeric	32759	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	3274433	3285235	AT4TE15030	.	+	ATHILA6A	Gypsy	LTR	10802	long	247	high	140759	pericentromeric	33066	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	3283996,3284663	3284894,3284902	+,+	transcript_id-"0a282efc-0b8a-48e0-b37d-8d569454816e|4",transcript_id-"a0b361ac-3a8e-4480-ad8a-25efdffa89ad|5"
Chr4	3288504	3288766	AT4TE15040	.	-	ATHILA	Gypsy	LTR	262	short	198	medium	154830	pericentromeric	29535	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3288875	3289805	AT4TE15045	.	-	ATHILA0_I	Gypsy	LTR	930	short	138	medium	155201	pericentromeric	28496	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3289805	3290000	AT4TE15050	.	-	ATHILA2	Gypsy	LTR	195	short	413	high	156131	pericentromeric	28301	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3290072	3291110	AT4TE15055	.	-	ATHILA0_I	Gypsy	LTR	1038	short	138	medium	156398	pericentromeric	27191	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3291163	3291323	AT4TE15060	.	-	ATLINE1_6	L1	LINE	160	short	129	medium	157489	pericentromeric	26978	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	3291341	3292566	AT4TE15065	.	+	ATHILA4A	Gypsy	LTR	1225	short	310	high	157667	pericentromeric	25735	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	3292575	3293552	AT4TE15070	.	-	ATLINE1_6	L1	LINE	977	short	129	medium	158901	pericentromeric	24749	no-RdDM	no-CHH	.	.	.	.	.
Chr4	3294251	3294351	AT4TE15075	.	+	HELITRONY1A	Helitron	RC	100	short	271	high	160577	pericentromeric	23950	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	3294351	3299627	AT4TE15080	.	-	ATLINEIII	L1	LINE	5276	long	196	medium	160677	pericentromeric	18674	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	3299631	3299671	AT4TE15085	.	+	HELITRONY1A	Helitron	RC	40	tiny	271	high	165957	pericentromeric	18630	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	3299671	3299695	AT4TE15090	.	+	HELITRONY1A	Helitron	RC	24	tiny	271	high	165997	pericentromeric	18606	no-CHH	no-CHH	.	.	.	.	.
Chr4	3299695	3301250	AT4TE15095	.	+	HELITRONY1A	Helitron	RC	1555	short	271	high	166021	pericentromeric	17051	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	3301250	3301527	AT4TE15100	.	-	ATENSPM4	En-Spm	DNA	277	short	50	medium	167576	pericentromeric	16774	no-RdDM	no-CHH	.	.	.	.	.
Chr4	3301604	3302193	AT4TE15105	.	-	Unassigned	.	Unassigned	589	short	.	low	167930	pericentromeric	16108	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	3302312	3305957	AT4TE15110	.	+	Unassigned	.	Unassigned	3645	medium	.	low	168638	pericentromeric	12344	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	3306170	3306491	AT4TE15115	.	-	Unassigned	.	Unassigned	321	short	.	low	172496	pericentromeric	11810	no-RdDM	no-CHH	ExpressedAndAnnotated	3307964,3307964	3306171,3306171	-,-	transcript_id-"913d1258-346a-4854-a6dc-c73e302c3b33|32",transcript_id-"94786b9e-4bdb-4d86-af3a-1579854eb4af|9"
Chr4	3310155	3310186	AT4TE15125	.	-	ATHILA6B	Gypsy	LTR	31	tiny	134	medium	176481	pericentromeric	8115	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	3310188	3314830	AT4TE15130	.	-	ATHILA2	Gypsy	LTR	4642	medium	413	high	176514	pericentromeric	3471	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr4	3314830	3315408	AT4TE15135	.	-	ATCOPIA49	Copia	LTR	578	short	34	low	181156	pericentromeric	2893	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3315408	3315446	AT4TE15140	.	-	ATCOPIA62	Copia	LTR	38	tiny	16	low	181734	pericentromeric	2855	no-CHH	no-CHH	.	.	.	.	.
Chr4	3316147	3316539	AT4TE15145	.	-	ATCOPIA95	Copia	LTR	392	short	72	medium	182473	pericentromeric	1762	no-RdDM	no-CHH	.	.	.	.	.
Chr4	3318658	3319023	AT4TE15155	.	-	ATGP10	Gypsy	LTR	365	short	165	medium	184984	pericentromeric	0	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3321048	3321179	AT4TE15165	.	-	ATDNA12T3A	.	DNA	131	short	22	low	187374	pericentromeric	103	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	3321179	3322845	AT4TE15170	.	-	ATGP10	Gypsy	LTR	1666	short	165	medium	187505	pericentromeric	234	no-RdDM	no-CHH	.	.	.	.	.
Chr4	3322845	3325627	AT4TE15175	.	-	ATGP7	Gypsy	LTR	2782	medium	47	low	189171	pericentromeric	1900	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	3324661	3324752	AT4TE15180	.	-	ATGP7	Gypsy	LTR	91	tiny	47	low	190987	pericentromeric	3716	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	3325627	3326910	AT4TE15185	.	-	ATGP7	Gypsy	LTR	1283	short	47	low	191953	pericentromeric	4682	no-RdDM	no-CHH	.	.	.	.	.
Chr4	3326928	3328131	AT4TE15190	.	+	ATHILA4A	Gypsy	LTR	1203	short	310	high	193254	pericentromeric	5983	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	3327350	3327510	+	transcript_id-"4a648d12-caae-4d33-8d9b-c8fbe399f203|3"
Chr4	3328134	3330397	AT4TE15195	.	+	ATENSPM7	En-Spm	DNA	2263	medium	74	medium	194460	pericentromeric	7189	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	3329818	3329861	AT4TE15200	.	+	ATENSPM3	En-Spm	DNA	43	tiny	98	medium	196144	pericentromeric	8873	no-RdDM	no-CHH	.	.	.	.	.
Chr4	3330403	3330602	AT4TE15205	.	+	ATENSPM3	En-Spm	DNA	199	short	98	medium	196729	pericentromeric	9458	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	3332401	3332952	AT4TE15210	.	-	ATGP8	Gypsy	LTR	551	short	92	medium	198727	pericentromeric	11456	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	3333167	3334351	AT4TE15215	.	-	ATHILA4B_LTR	Gypsy	LTR	1184	short	143	medium	199493	pericentromeric	12222	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	3334351	3334436	AT4TE15220	.	-	ATHILA4	Gypsy	LTR	85	tiny	250	high	200677	pericentromeric	13406	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3335337	3335757	AT4TE15225	.	-	ATGP8	Gypsy	LTR	420	short	92	medium	201663	pericentromeric	14392	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	3336731	3337334	AT4TE15230	.	+	TAT1_ATH	Gypsy	LTR	603	short	87	medium	203057	pericentromeric	15786	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	3337698	3341692	AT4TE15235	.	+	ATLANTYS1	Gypsy	LTR	3994	medium	153	medium	204024	pericentromeric	15177	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr4	3340300	3340356	AT4TE15240	.	+	ATLANTYS2	Gypsy	LTR	56	tiny	179	medium	206626	pericentromeric	16513	no-RdDM	no-CHH	.	.	.	.	.
Chr4	3343776	3344827	AT4TE15250	.	-	ARNOLDY1	MuDR	DNA	1051	short	237	high	210102	pericentromeric	12042	PolIV-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr4	3344828	3354743	AT4TE15255	.	-	ATHILA2	Gypsy	LTR	9915	long	413	high	211154	pericentromeric	2126	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	3344843	3346143	AT4TE15260	.	-	ATHILA2	Gypsy	LTR	1300	short	413	high	211169	pericentromeric	10726	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	3348268	3348768	AT4TE15270	.	-	ATHILA2	Gypsy	LTR	500	short	413	high	214594	pericentromeric	8101	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	3348857	3348881	AT4TE15275	.	-	ATHILA2	Gypsy	LTR	24	tiny	413	high	215183	pericentromeric	7988	RDR6-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	3348881	3349187	AT4TE15280	.	-	ATHILA2	Gypsy	LTR	306	short	413	high	215207	pericentromeric	7682	DCL3-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	3349187	3349281	AT4TE15285	.	-	ATHILA6A	Gypsy	LTR	94	tiny	247	high	215513	pericentromeric	7588	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	3352990	3354561	AT4TE15295	.	-	ATHILA2	Gypsy	LTR	1571	short	413	high	219316	pericentromeric	2308	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	3354752	3355112	AT4TE15300	.	-	HELITRONY3	Helitron	RC	360	short	1399	high	221078	pericentromeric	1757	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	3355112	3355156	AT4TE15305	.	+	ARNOLDY1	MuDR	DNA	44	tiny	237	high	221438	pericentromeric	1713	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	3356551	3356712	AT4TE15310	.	+	RathE3_cons	.	RathE3_cons	161	short	104	medium	222877	pericentromeric	157	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	3358042	3358169	AT4TE15315	.	-	HELITRONY3	Helitron	RC	127	short	1399	high	224368	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	3358181	3359623	AT4TE15320	.	+	ATREP11	Helitron	RC	1442	short	841	high	224507	pericentromeric	94	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	3359623	3360298	AT4TE15325	.	-	HELITRONY3	Helitron	RC	675	short	1399	high	225949	pericentromeric	447	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	3360298	3360414	AT4TE15330	.	-	HELITRONY3	Helitron	RC	116	short	1399	high	226624	pericentromeric	331	no-CHH	no-CHH	.	.	.	.	.
Chr4	3361412	3361491	AT4TE15335	.	+	HELITRONY1A	Helitron	RC	79	tiny	271	high	227738	pericentromeric	157	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	3361491	3361520	AT4TE15340	.	+	BRODYAGA1A	MuDR	DNA	29	tiny	586	high	227817	pericentromeric	236	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	3361520	3362384	AT4TE15345	.	+	HELITRONY1B	Helitron	RC	864	short	414	high	227846	pericentromeric	265	no-CHH	no-CHH	.	.	.	.	.
Chr4	3362384	3362469	AT4TE15350	.	+	ATREP5	Helitron	RC	85	tiny	624	high	228710	pericentromeric	1129	no-RdDM	no-CHH	.	.	.	.	.
Chr4	3362471	3364950	AT4TE15355	.	+	ATHILA4	Gypsy	LTR	2479	medium	250	high	228797	pericentromeric	1216	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	3364950	3364997	AT4TE15360	.	-	ATHILA8B	Gypsy	LTR	47	tiny	78	medium	231276	pericentromeric	3695	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3364997	3369465	AT4TE15365	.	+	ATLANTYS2	Gypsy	LTR	4468	medium	179	medium	231323	pericentromeric	3742	no-RdDM	no-RdDM	ExpressedAndAnnotated	3369263	3365839	-	transcript_id-"dea58f04-7575-40e1-a59d-fb95053f5e65|3"
Chr4	3369465	3369675	AT4TE15370	.	+	ATHILA4B_LTR	Gypsy	LTR	210	short	143	medium	235791	pericentromeric	8210	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	3370696	3371243	AT4TE15375	.	+	ATCOPIA66	Copia	LTR	547	short	20	low	237022	pericentromeric	9441	no-RdDM	no-CHH	.	.	.	.	.
Chr4	3372306	3374622	AT4TE15380	.	-	ATHILA3	Gypsy	LTR	2316	medium	243	high	238632	pericentromeric	11051	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	3373026	3373075	AT4TE15385	.	-	ATHILA3	Gypsy	LTR	49	tiny	243	high	239352	pericentromeric	11771	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3374657	3374712	AT4TE15390	.	+	ATHILA3	Gypsy	LTR	55	tiny	243	high	240983	pericentromeric	13402	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	3374712	3374812	AT4TE15395	.	+	ATHILA0_I	Gypsy	LTR	100	short	138	medium	241038	pericentromeric	13457	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	3374812	3376091	AT4TE15400	.	+	ATHILA3	Gypsy	LTR	1279	short	243	high	241138	pericentromeric	13557	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	3376091	3378542	AT4TE15405	.	+	ATHILA3	Gypsy	LTR	2451	medium	243	high	242417	pericentromeric	14836	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	3378542	3378719	AT4TE15410	.	+	ATHILA0_I	Gypsy	LTR	177	short	138	medium	244868	pericentromeric	17287	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	3379163	3379352	AT4TE15415	.	+	ATHILA5	Gypsy	LTR	189	short	131	medium	245489	pericentromeric	17908	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	3379352	3392103	AT4TE15420	.	-	ATHILA2	Gypsy	LTR	12751	long	413	high	245678	pericentromeric	18097	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	3381281,3381341	3380772,3381574	-,+	transcript_id-"51bdf721-c2fa-49a5-9968-95783ed84afd|4",transcript_id-"bb164314-0132-4a42-aae7-2ab6cd5a25ea|3"
Chr4	3383503	3383618	AT4TE15425	.	+	ATHILA3	Gypsy	LTR	115	short	243	high	249829	pericentromeric	22248	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	3383626	3383819	AT4TE15430	.	+	ATHILA3	Gypsy	LTR	193	short	243	high	249952	pericentromeric	22371	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	3383819	3384343	AT4TE15435	.	+	ATHILA3	Gypsy	LTR	524	short	243	high	250145	pericentromeric	22564	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	3384359	3389184	AT4TE15440	.	+	ATHILA3	Gypsy	LTR	4825	medium	243	high	250685	pericentromeric	23104	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	3386257,3386257,3386257	3386833,3387049,3388257	+,+,+	transcript_id-"599965e6-5c28-4de2-9916-81807a8081b1|92",transcript_id-"9cd27838-89d1-49b1-9085-d32253bb6792|4",transcript_id-"5e3591ab-65de-4211-bbea-97c7197a1059|93"
Chr4	3392103	3392811	AT4TE15450	.	-	ATHILA2	Gypsy	LTR	708	short	413	high	258429	pericentromeric	30848	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr4	3392811	3392837	AT4TE15455	.	-	ATHILA2	Gypsy	LTR	26	tiny	413	high	259137	pericentromeric	31556	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3392837	3393418	AT4TE15460	.	+	ATHILA5	Gypsy	LTR	581	short	131	medium	259163	pericentromeric	31582	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	3393418	3393452	AT4TE15465	.	+	ATHILA5	Gypsy	LTR	34	tiny	131	medium	259744	pericentromeric	32163	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	3393452	3395560	AT4TE15470	.	+	ATHILA3	Gypsy	LTR	2108	medium	243	high	259778	pericentromeric	32197	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr4	3395560	3401983	AT4TE15475	.	-	ATLANTYS1	Gypsy	LTR	6423	long	153	medium	261886	pericentromeric	34305	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	3401983	3402186	AT4TE15480	.	+	ATGP10	Gypsy	LTR	203	short	165	medium	268309	pericentromeric	40728	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3402186	3402775	AT4TE15485	.	+	ATGP10	Gypsy	LTR	589	short	165	medium	268512	pericentromeric	40931	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3403373	3404010	AT4TE15490	.	-	ATHILA	Gypsy	LTR	637	short	198	medium	269699	pericentromeric	42118	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr4	3404010	3405142	AT4TE15495	.	-	ATHILA4	Gypsy	LTR	1132	short	250	high	270336	pericentromeric	42755	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	3405166	3406623	AT4TE15500	.	-	ATHILA	Gypsy	LTR	1457	short	198	medium	271492	pericentromeric	43911	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr4	3406623	3407298	AT4TE15505	.	+	ATHILA4C	Gypsy	LTR	675	short	206	high	272949	pericentromeric	45368	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	3406635	3407271	AT4TE15510	.	+	ATHILA4C	Gypsy	LTR	636	short	206	high	272961	pericentromeric	45380	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	3408792	3408892	AT4TE15515	.	-	ATHILA	Gypsy	LTR	100	short	198	medium	275118	pericentromeric	47537	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr4	3408892	3409918	AT4TE15520	.	-	ATHILA	Gypsy	LTR	1026	short	198	medium	275218	pericentromeric	47637	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	3410858	3411608	AT4TE15525	.	+	ATGP10	Gypsy	LTR	750	short	165	medium	277184	pericentromeric	49603	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3411608	3411641	AT4TE15530	.	+	ATGP10	Gypsy	LTR	33	tiny	165	medium	277934	pericentromeric	50353	no-RdDM	no-CHH	.	.	.	.	.
Chr4	3413838	3414208	AT4TE15540	.	-	ATENSPM6	En-Spm	DNA	370	short	151	medium	280164	pericentromeric	52583	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3414850	3414954	AT4TE15545	.	+	ATGP10	Gypsy	LTR	104	short	165	medium	281176	pericentromeric	53595	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	3416876	3417394	AT4TE15555	.	+	ATGP10	Gypsy	LTR	518	short	165	medium	283202	pericentromeric	55621	no-RdDM	no-RdDM	ExpressedAndAnnotated	3415750,3415750,3415750,3415751,3415751,3415751	3417170,3417983,3417991,3417170,3417465,3417991	+,+,+,+,+,+	transcript_id-"9225baac-d00b-405f-9e55-b0a52247aba6|20",transcript_id-"489b2fcc-01f0-4938-b1df-d23be7912cde|7",transcript_id-"4c02c6b4-91fb-4eac-97d0-51e8c8dd2080|3",transcript_id-"38fc5835-8b9e-483c-b10f-f773d91b8e25|28",transcript_id-"26757d8a-745d-42ac-b9af-67bddd8b0b3d|3",transcript_id-"28d9a2d7-6f4d-4006-9224-a8cf6b8254e9|6"
Chr4	3418219	3418249	AT4TE15560	.	+	VANDAL15	MuDR	DNA	30	tiny	6	low	284545	pericentromeric	56964	no-RdDM	no-CHH	.	.	.	.	.
Chr4	3418249	3423025	AT4TE15565	.	+	VANDAL15	MuDR	DNA	4776	medium	6	low	284575	pericentromeric	56994	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	3423032	3427370	AT4TE15570	.	+	VANDAL16	MuDR	DNA	4338	medium	42	low	289358	pericentromeric	61777	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	3427892	3429832	AT4TE15575	.	+	AT9TSD1	MuDR	DNA	1940	short	55	medium	294218	pericentromeric	66637	no-RdDM	no-CHH	.	.	.	.	.
Chr4	3430417	3431700	AT4TE15580	.	-	VANDAL21	MuDR	DNA	1283	short	64	medium	296743	pericentromeric	69162	no-RdDM	no-CHH	ExpressedAndAnnotated	3430639	3432179	+	transcript_id-"c074ec16-f91c-40a1-8a09-bc4917646992|4"
Chr4	3431700	3443038	AT4TE15585	.	+	ATHILA4C	Gypsy	LTR	11338	long	206	high	298026	pericentromeric	70445	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	3439370	3441218	+	transcript_id-"b855aefe-5cde-4dee-8a93-6f6e4232416c|3"
Chr4	3438017	3439212	AT4TE15590	.	+	ATGP2	Gypsy	LTR	1195	short	48	low	304343	pericentromeric	76762	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	3443048	3443380	AT4TE15610	.	+	ATHILA4C	Gypsy	LTR	332	short	206	high	309374	pericentromeric	80050	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	3443380	3449415	AT4TE15615	.	-	VANDAL21	MuDR	DNA	6035	long	64	medium	309706	pericentromeric	74015	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	3445585,3445931	3445252,3445295	-,-	transcript_id-"d40b77aa-c678-4f66-a4e3-762b3686305a|4",transcript_id-"a9355eeb-9655-4ab3-8cac-d0b4122bdcfd|4"
Chr4	3445706	3445848	AT4TE15620	.	-	ATMU4	MuDR	DNA	142	short	14	low	312032	pericentromeric	77582	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	3445848	3446203	AT4TE15625	.	-	ATMU4	MuDR	DNA	355	short	14	low	312174	pericentromeric	77227	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	3449450	3449643	AT4TE15635	.	+	ATENSPM5	En-Spm	DNA	193	short	111	medium	315776	pericentromeric	73787	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	3450445	3451214	AT4TE15640	.	-	ARNOLD4	MuDR	DNA	769	short	23	low	316771	pericentromeric	72216	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3451813	3451846	AT4TE15645	.	+	HELITRONY1D	Helitron	RC	33	tiny	756	high	318139	pericentromeric	71584	no-RdDM	no-CHH	.	.	.	.	.
Chr4	3451846	3452570	AT4TE15650	.	+	HELITRON4	Helitron	RC	724	short	199	medium	318172	pericentromeric	70860	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3452570	3452652	AT4TE15655	.	+	ATREP11	Helitron	RC	82	tiny	841	high	318896	pericentromeric	70778	no-RdDM	no-CHH	.	.	.	.	.
Chr4	3452652	3454090	AT4TE15660	.	+	VANDAL15	MuDR	DNA	1438	short	6	low	318978	pericentromeric	69340	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	3454105	3469494	AT4TE15665	.	+	ATHILA4C	Gypsy	LTR	15389	long	206	high	320431	pericentromeric	53936	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	3466334,3466334,3466334	3466828,3466919,3468391	+,+,+	transcript_id-"6e9f54fc-e5c7-4355-ac1b-2172b018b59f|3",transcript_id-"cb2cf728-699c-41ff-b1dd-4d246481c0e8|257",transcript_id-"bf6ac04a-863a-4028-a050-29129bf3a867|4"
Chr4	3455686	3469254	AT4TE15670	.	+	ATHILA0_I	Gypsy	LTR	13568	long	138	medium	322012	pericentromeric	54176	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	3466334,3466334,3466334	3466828,3466919,3468391	+,+,+	transcript_id-"6e9f54fc-e5c7-4355-ac1b-2172b018b59f|3",transcript_id-"cb2cf728-699c-41ff-b1dd-4d246481c0e8|257",transcript_id-"bf6ac04a-863a-4028-a050-29129bf3a867|4"
Chr4	3469494	3470295	AT4TE15675	.	+	ATHILA4C	Gypsy	LTR	801	short	206	high	335820	pericentromeric	53135	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	3470392	3472402	AT4TE15680	.	+	ATHILA4A	Gypsy	LTR	2010	medium	310	high	336718	pericentromeric	51028	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	3472402	3481431	AT4TE15685	.	+	ATENSPM7	En-Spm	DNA	9029	long	74	medium	338728	pericentromeric	41999	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr4	3474944	3475087	AT4TE15690	.	+	ATREP10	Helitron	RC	143	short	63	medium	341270	pericentromeric	48343	no-RdDM	no-CHH	.	.	.	.	.
Chr4	3475729	3476516	AT4TE15695	.	-	ATLANTYS2	Gypsy	LTR	787	short	179	medium	342055	pericentromeric	46914	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	3476516	3476568	AT4TE15700	.	-	ATHAT2	HAT	DNA	52	tiny	19	low	342842	pericentromeric	46862	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	3476568	3478437	AT4TE15705	.	-	ATHAT7	HAT	DNA	1869	short	20	low	342894	pericentromeric	44993	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	3478437	3478462	AT4TE15710	.	-	ATHAT3	HAT	DNA	25	tiny	23	low	344763	pericentromeric	44968	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	3478462	3478487	AT4TE15715	.	-	ATHAT7	HAT	DNA	25	tiny	20	low	344788	pericentromeric	44943	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	3479253	3479414	AT4TE15720	.	-	ATHATN6	HAT	DNA	161	short	43	low	345579	pericentromeric	44016	no-RdDM	no-CHH	.	.	.	.	.
Chr4	3479414	3479488	AT4TE15725	.	+	ATENSPM3	En-Spm	DNA	74	tiny	98	medium	345740	pericentromeric	43942	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	3481431	3481494	AT4TE15735	.	+	ATENSPM3	En-Spm	DNA	63	tiny	98	medium	347757	pericentromeric	41936	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	3481523	3483155	AT4TE15740	.	-	ATHILA0_I	Gypsy	LTR	1632	short	138	medium	347849	pericentromeric	40275	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	3483155	3484488	AT4TE15745	.	-	ATGP10	Gypsy	LTR	1333	short	165	medium	349481	pericentromeric	38942	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	3484488	3490411	AT4TE15750	.	-	ATHILA3	Gypsy	LTR	5923	long	243	high	350814	pericentromeric	33019	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr4	3484554	3484834	AT4TE15755	.	-	ATHILA6A	Gypsy	LTR	280	short	247	high	350880	pericentromeric	38596	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	3489823	3489873	AT4TE15780	.	-	ATHILA3	Gypsy	LTR	50	tiny	243	high	356149	pericentromeric	33557	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3490411	3491401	AT4TE15785	.	-	ATHILA6A	Gypsy	LTR	990	short	247	high	356737	pericentromeric	32029	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr4	3491401	3491713	AT4TE15790	.	+	ATHILA6B	Gypsy	LTR	312	short	134	medium	357727	pericentromeric	31717	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr4	3491713	3491951	AT4TE15795	.	+	ATHILA3	Gypsy	LTR	238	short	243	high	358039	pericentromeric	31479	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	3491951	3494229	AT4TE15800	.	+	ATHILA6A	Gypsy	LTR	2278	medium	247	high	358277	pericentromeric	29201	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr4	3494229	3498042	AT4TE15805	.	-	ATHILA6A	Gypsy	LTR	3813	medium	247	high	360555	pericentromeric	25388	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	3498042	3499665	AT4TE15810	.	-	ATHILA3	Gypsy	LTR	1623	short	243	high	364368	pericentromeric	23765	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	3499665	3499712	AT4TE15815	.	-	ATLANTYS2	Gypsy	LTR	47	tiny	179	medium	365991	pericentromeric	23718	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	3499712	3507968	AT4TE15820	.	-	ATLANTYS2	Gypsy	LTR	8256	long	179	medium	366038	pericentromeric	15462	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	3506698,3506839,3506698,3506698,3506699,3506699,3503560,3506694,3506698,3506249,3506829,3506698,3506698	3501705,3502167,3502220,3502230,3502230,3502938,3503144,3503189,3505325,3506111,3506111,3506177,3506555	-,-,-,-,-,-,-,-,-,-,-,-,-	transcript_id-"9ef8c16b-07ad-4141-a095-ec4719d56d98|521",transcript_id-"8df85b07-5063-4141-9d57-0c6249e4dc7e|14",transcript_id-"5155f04c-e039-46b1-935a-8965e37239ec|778",transcript_id-"875663f4-9846-4d06-9ad9-3b207b9dbc10|17",transcript_id-"21bbcedb-70d5-4565-8324-0da2353ca2e0|21",transcript_id-"c4de7cc3-fb16-4de6-870a-7043b18e2047|7",transcript_id-"a83bee69-3179-47de-bcc3-6efb6d94d726|3",transcript_id-"82cfb39e-a784-4b2e-8deb-8a1fd150ec3f|5",transcript_id-"5bb564dc-ebee-45e6-bef4-7fa0cdad2cb9|6",transcript_id-"2070e994-6c5c-4d1e-8b94-f7c7b6aeb838|5",transcript_id-"baa67eb1-388b-4045-b2de-a23b42258fba|3",transcript_id-"380c93d4-adc5-4d0c-a476-5f42cf825882|10",transcript_id-"758445d4-813e-4122-9510-c8e36a49fec8|3"
Chr4	3501967	3503976	AT4TE15825	.	-	ATGP10	Gypsy	LTR	2009	medium	165	medium	368293	pericentromeric	19454	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	3506698,3506839,3506698,3506698,3506699,3503560	3501705,3502167,3502220,3502230,3502230,3503144	-,-,-,-,-,-	transcript_id-"9ef8c16b-07ad-4141-a095-ec4719d56d98|521",transcript_id-"8df85b07-5063-4141-9d57-0c6249e4dc7e|14",transcript_id-"5155f04c-e039-46b1-935a-8965e37239ec|778",transcript_id-"875663f4-9846-4d06-9ad9-3b207b9dbc10|17",transcript_id-"21bbcedb-70d5-4565-8324-0da2353ca2e0|21",transcript_id-"a83bee69-3179-47de-bcc3-6efb6d94d726|3"
Chr4	3506114	3506471	AT4TE15835	.	-	ATGP10	Gypsy	LTR	357	short	165	medium	372440	pericentromeric	16959	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	3506249	3506111	-	transcript_id-"2070e994-6c5c-4d1e-8b94-f7c7b6aeb838|5"
Chr4	3507988	3509559	AT4TE15840	.	+	ATHILA3	Gypsy	LTR	1571	short	243	high	374314	pericentromeric	13871	no-RdDM	no-RdDM	ExpressedAndAnnotated	3507978	3508514	+	transcript_id-"8dd605a9-77e6-49b8-b455-8a850e62a3c5|6"
Chr4	3509559	3511377	AT4TE15845	.	+	ATHAT1	HAT	DNA	1818	short	105	medium	375885	pericentromeric	12053	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	3511716	3512143	AT4TE15850	.	-	ATREP10D	Helitron	RC	427	short	1295	high	378042	pericentromeric	11287	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr4	3514198	3516760	AT4TE15860	.	-	ATENSPM2	En-Spm	DNA	2562	medium	114	medium	380524	pericentromeric	6670	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3516779	3517984	AT4TE15865	.	+	ATHILA4B_LTR	Gypsy	LTR	1205	short	143	medium	383105	pericentromeric	5446	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3519592	3519815	AT4TE15870	.	+	ATENSPM6	En-Spm	DNA	223	short	151	medium	385918	pericentromeric	3615	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	3518595	3521099	+	transcript_id-"3fb39a27-f60d-4ede-9596-49f0f2c91bb7|7"
Chr4	3519815	3521461	AT4TE15875	.	+	ATENSPM9	En-Spm	DNA	1646	short	97	medium	386141	pericentromeric	1969	no-RdDM	no-CHH	ExpressedAndAnnotated	3518595,3520755,3520890	3521099,3521072,3521072	+,+,+	transcript_id-"3fb39a27-f60d-4ede-9596-49f0f2c91bb7|7",transcript_id-"c84d298c-4306-456c-8137-66484391ce72|3",transcript_id-"4daeeac9-d625-470b-b6b8-5250dff8fa27|36"
Chr4	3523006	3523398	AT4TE15880	.	-	ATREP3	Helitron	RC	392	short	1439	high	389332	pericentromeric	32	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	3524616	3525038	AT4TE15885	.	-	HELITRONY2	Helitron	RC	422	short	198	medium	390942	pericentromeric	679	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	3525669	3530360	AT4TE15890	.	+	VANDAL8	MuDR	DNA	4691	medium	123	medium	391995	pericentromeric	1732	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	3526053,3526092,3526102	3527050,3527061,3527007	+,+,+	transcript_id-"2eb59890-5d23-4af2-963d-06c5ad7ae206|5",transcript_id-"476affaa-e753-4125-9c07-676eda9350b4|29",transcript_id-"7bbd1367-a247-4ec4-b274-14abcd541fe1|3"
Chr4	3529554	3529615	AT4TE15895	.	+	VANDAL8	MuDR	DNA	61	tiny	123	medium	395880	pericentromeric	5617	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3529615	3529796	AT4TE15900	.	-	BRODYAGA1	MuDR	DNA	181	short	251	high	395941	pericentromeric	5678	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	3530734	3531308	AT4TE15905	.	-	VANDAL3	MuDR	DNA	574	short	177	medium	397060	pericentromeric	6797	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	3531308	3531520	AT4TE15910	.	-	VANDAL8	MuDR	DNA	212	short	123	medium	397634	pericentromeric	7371	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	3531520	3535531	AT4TE15915	.	-	VANDAL8	MuDR	DNA	4011	medium	123	medium	397846	pericentromeric	7583	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	3535354,3535354	3535035,3535100	-,-	transcript_id-"47ee0c77-f96b-47a1-a896-c6aa3785f0bb|10",transcript_id-"dbaabf28-5254-4ac9-a933-3949a19d4de7|4"
Chr4	3532609	3533234	AT4TE15920	.	-	VANDAL8	MuDR	DNA	625	short	123	medium	398935	pericentromeric	8672	no-RdDM	no-CHH	.	.	.	.	.
Chr4	3533235	3533472	AT4TE15925	.	-	VANDAL8	MuDR	DNA	238	short	123	medium	399560	pericentromeric	9297	.	.	.	.	.	.	.
Chr4	3536833	3537035	AT4TE15935	.	-	ATTIR16T3A	.	DNA	202	short	106	medium	403159	pericentromeric	12896	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr4	3537209	3537290	AT4TE15940	.	-	ATHILA2	Gypsy	LTR	81	tiny	413	high	403535	pericentromeric	13272	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	3537290	3547183	AT4TE15945	.	-	ATHILA2	Gypsy	LTR	9893	long	413	high	403616	pericentromeric	13353	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	3539131	3537119	-	transcript_id-"0612b985-e4b7-4b71-ab50-027aae896195|7"
Chr4	3547183	3555683	AT4TE15950	.	+	ATHILA6A	Gypsy	LTR	8500	long	247	high	413509	pericentromeric	20475	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr4	3555699	3560084	AT4TE15955	.	+	VANDAL3	MuDR	DNA	4385	medium	177	medium	422025	pericentromeric	16074	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	3559756	3555885	-	transcript_id-"ce081735-0412-4a33-886a-2226def9a20b|5"
Chr4	3560084	3560872	AT4TE15960	.	-	ATHILA4D_LTR	Gypsy	LTR	788	short	106	medium	426410	pericentromeric	15286	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	3560872	3562389	AT4TE15965	.	-	ATHILA4C	Gypsy	LTR	1517	short	206	high	427198	pericentromeric	13769	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr4	3562389	3565813	AT4TE15970	.	-	ATHILA3	Gypsy	LTR	3424	medium	243	high	428715	pericentromeric	10345	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	3565813	3566321	AT4TE15975	.	-	ATHILA5	Gypsy	LTR	508	short	131	medium	432139	pericentromeric	9837	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr4	3566364	3566415	AT4TE15980	.	-	ATHILA5	Gypsy	LTR	51	tiny	131	medium	432690	pericentromeric	9743	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	3566415	3567222	AT4TE15985	.	-	ATHILA5	Gypsy	LTR	807	short	131	medium	432741	pericentromeric	8936	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr4	3567222	3571075	AT4TE15990	.	+	ATHILA4	Gypsy	LTR	3853	medium	250	high	433548	pericentromeric	5083	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr4	3571075	3572116	AT4TE15995	.	+	ATHILA4B_LTR	Gypsy	LTR	1041	short	143	medium	437401	pericentromeric	4042	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	3577673	3581715	AT4TE16020	.	-	ATLANTYS1	Gypsy	LTR	4042	medium	153	medium	443999	pericentromeric	1164	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr4	3579272	3579325	AT4TE16025	.	-	ATLANTYS1	Gypsy	LTR	53	tiny	153	medium	445598	pericentromeric	2763	no-RdDM	no-CHH	.	.	.	.	.
Chr4	3581715	3581843	AT4TE16035	.	-	ATLANTYS1	Gypsy	LTR	128	short	153	medium	448041	pericentromeric	5206	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	3582256	3582693	AT4TE16040	.	-	TAT1_ATH	Gypsy	LTR	437	short	87	medium	448582	pericentromeric	5747	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3583810	3584157	AT4TE16045	.	+	ATHILA4B_LTR	Gypsy	LTR	347	short	143	medium	450136	pericentromeric	7301	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	3584157	3584407	AT4TE16050	.	-	ATHILA5	Gypsy	LTR	250	short	131	medium	450483	pericentromeric	7648	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr4	3584863	3585023	AT4TE16055	.	-	ATHILA0_I	Gypsy	LTR	160	short	138	medium	451189	pericentromeric	8354	no-RdDM	no-CHH	.	.	.	.	.
Chr4	3585077	3590343	AT4TE16060	.	-	ATHILA3	Gypsy	LTR	5266	long	243	high	451403	pericentromeric	8568	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr4	3586822	3586870	AT4TE16065	.	-	ATHILA0_I	Gypsy	LTR	48	tiny	138	medium	453148	pericentromeric	10313	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3590344	3590830	AT4TE16075	.	-	ATHILA4C	Gypsy	LTR	486	short	206	high	456670	pericentromeric	13835	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	3590830	3604525	AT4TE16080	.	-	ATHILA3	Gypsy	LTR	13695	long	243	high	457156	pericentromeric	14321	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	3593772,3593772,3593772	3591752,3593205,3593597	-,-,-	transcript_id-"ce0744a8-2c27-4f4d-a468-3a734ed8ba12|20",transcript_id-"3f80a5f9-2a06-4a6b-8738-61ffd7a49f49|5",transcript_id-"ff72f35c-1701-402a-a7e1-67ec67d8d8c3|7"
Chr4	3597264	3603698	AT4TE16085	.	+	ATENSPM11	En-Spm	DNA	6434	long	47	low	463590	pericentromeric	20755	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	3603056	3603405	+	transcript_id-"b696f91d-5f7b-4807-8d06-56120786fc2d|4"
Chr4	3604525	3604575	AT4TE16090	.	-	ATHILA6A	Gypsy	LTR	50	tiny	247	high	470851	pericentromeric	28016	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3604575	3604890	AT4TE16095	.	-	ATHILA3	Gypsy	LTR	315	short	243	high	470901	pericentromeric	28066	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3604905	3606762	AT4TE16100	.	+	ATENSPM9	En-Spm	DNA	1857	short	97	medium	471231	pericentromeric	28396	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3606762	3606797	AT4TE16105	.	+	ATENSPM6	En-Spm	DNA	35	tiny	151	medium	473088	pericentromeric	30253	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	3606797	3611658	AT4TE16110	.	-	ATHILA4C	Gypsy	LTR	4861	medium	206	high	473123	pericentromeric	30288	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr4	3611658	3612079	AT4TE16115	.	-	ATHILA4C	Gypsy	LTR	421	short	206	high	477984	pericentromeric	35149	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	3612079	3613845	AT4TE16120	.	+	ATHILA4A	Gypsy	LTR	1766	short	310	high	478405	pericentromeric	35570	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	3613845	3614033	AT4TE16125	.	-	ATHILA4D_LTR	Gypsy	LTR	188	short	106	medium	480171	pericentromeric	37336	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	3614054	3614461	AT4TE16130	.	+	ATENSPM9	En-Spm	DNA	407	short	97	medium	480380	pericentromeric	37545	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	3614476	3614558	AT4TE16135	.	+	ATHILA3	Gypsy	LTR	82	tiny	243	high	480802	pericentromeric	37967	no-RdDM	no-CHH	.	.	.	.	.
Chr4	3614716	3615361	AT4TE16140	.	+	ATGP8	Gypsy	LTR	645	short	92	medium	481042	pericentromeric	38207	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	3615622	3615644	AT4TE16145	.	-	ATHILA2	Gypsy	LTR	22	tiny	413	high	481948	pericentromeric	39113	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	3615644	3621063	AT4TE16150	.	-	ATHILA2	Gypsy	LTR	5419	long	413	high	481970	pericentromeric	39135	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	3621063	3621096	AT4TE16155	.	-	ATHILA2	Gypsy	LTR	33	tiny	413	high	487389	pericentromeric	42848	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	3621280	3621331	AT4TE16160	.	+	ATLANTYS1	Gypsy	LTR	51	tiny	153	medium	487606	pericentromeric	42613	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	3621331	3629520	AT4TE16165	.	+	ATLANTYS1	Gypsy	LTR	8189	long	153	medium	487657	pericentromeric	34424	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	3621554,3627415	3621763,3626888	+,-	transcript_id-"f3f3c4e1-b702-43b6-9a53-2553cd0ae9ba|8",transcript_id-"85da9355-1426-4f95-8df4-5467bc61d5d7|3"
Chr4	3629520	3629563	AT4TE16170	.	+	ATLANTYS1	Gypsy	LTR	43	tiny	153	medium	495846	pericentromeric	34381	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	3629712	3630127	AT4TE16175	.	-	ATHILA6A	Gypsy	LTR	415	short	247	high	496038	pericentromeric	33817	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	3630127	3630169	AT4TE16180	.	-	ATHILA6B	Gypsy	LTR	42	tiny	134	medium	496453	pericentromeric	33775	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	3630175	3636108	AT4TE16185	.	-	ATHILA6A	Gypsy	LTR	5933	long	247	high	496501	pericentromeric	27836	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	3636108	3637892	AT4TE16190	.	-	ATHILA2	Gypsy	LTR	1784	short	413	high	502434	pericentromeric	26052	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	3639089	3639129	AT4TE16195	.	+	ATGP2	Gypsy	LTR	40	tiny	48	low	505415	pericentromeric	24815	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3639129	3643707	AT4TE16200	.	+	ATGP8	Gypsy	LTR	4578	medium	92	medium	505455	pericentromeric	20237	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	3643722	3644649	AT4TE16205	.	+	ATCOPIA61	Copia	LTR	927	short	12	low	510048	pericentromeric	19295	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	3644655	3646363	AT4TE16210	.	-	ATHILA8B	Gypsy	LTR	1708	short	78	medium	510981	pericentromeric	17581	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	3646363	3646422	AT4TE16215	.	+	ATCOPIA62	Copia	LTR	59	tiny	16	low	512689	pericentromeric	17522	no-RdDM	no-CHH	.	.	.	.	.
Chr4	3646422	3646809	AT4TE16220	.	-	ATGP7	Gypsy	LTR	387	short	47	low	512748	pericentromeric	17135	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	3646809	3646845	AT4TE16225	.	-	ATGP5	Gypsy	LTR	36	tiny	86	medium	513135	pericentromeric	17099	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3646880	3647686	AT4TE16230	.	-	ATHILA3	Gypsy	LTR	806	short	243	high	513206	pericentromeric	16258	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	3647686	3648128	AT4TE16235	.	-	ATGP5	Gypsy	LTR	442	short	86	medium	514012	pericentromeric	15816	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	3648855	3649023	AT4TE16240	.	-	AT9TSD1	MuDR	DNA	168	short	55	medium	515181	pericentromeric	14921	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	3650752	3650818	AT4TE16245	.	-	TAT1_ATH	Gypsy	LTR	66	tiny	87	medium	517078	pericentromeric	13126	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	3656054	3656656	AT4TE16270	.	-	ATGP5	Gypsy	LTR	602	short	86	medium	522380	pericentromeric	7288	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	3656672	3657566	AT4TE16275	.	+	ATLINEIII	L1	LINE	894	short	196	medium	522998	pericentromeric	6378	no-RdDM	no-CHH	.	.	.	.	.
Chr4	3657587	3658339	AT4TE16280	.	-	ATGP5	Gypsy	LTR	752	short	86	medium	523913	pericentromeric	5605	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3660561	3660582	AT4TE16290	.	-	ATHILA	Gypsy	LTR	21	tiny	198	medium	526887	pericentromeric	3362	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3660584	3662283	AT4TE16295	.	-	ATHILA6A	Gypsy	LTR	1699	short	247	high	526910	pericentromeric	1661	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3662283	3662365	AT4TE16300	.	-	ATHILA6B	Gypsy	LTR	82	tiny	134	medium	528609	pericentromeric	1579	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	3662528	3663180	AT4TE16305	.	+	ATHPOGON3	Pogo	DNA	652	short	118	medium	528854	pericentromeric	764	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	3663180	3663446	AT4TE16310	.	+	HELITRONY1E	Helitron	RC	266	short	447	high	529506	pericentromeric	498	no-CHH	no-CHH	.	.	.	.	.
Chr4	3669430	3669454	AT4TE16340	.	-	ATHILA4C	Gypsy	LTR	24	tiny	206	high	535756	pericentromeric	1935	no-CHH	no-RdDM	.	.	.	.	.
Chr4	3669454	3670598	AT4TE16345	.	-	ATHILA4D_LTR	Gypsy	LTR	1144	short	106	medium	535780	pericentromeric	1959	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	3670667	3670935	AT4TE16350	.	-	ATCOPIA94	Copia	LTR	268	short	39	low	536993	pericentromeric	3172	DCL3-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	3671189	3671429	AT4TE16355	.	-	ATHILA4C	Gypsy	LTR	240	short	206	high	537515	pericentromeric	3694	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	3671875	3672014	AT4TE16360	.	-	ATHILA4A	Gypsy	LTR	139	short	310	high	538201	pericentromeric	4380	no-RdDM	no-CHH	.	.	.	.	.
Chr4	3672531	3672848	AT4TE16365	.	-	ATHILA8B	Gypsy	LTR	317	short	78	medium	538857	pericentromeric	5036	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	3673438	3674567	AT4TE16370	.	-	ATHILA4A	Gypsy	LTR	1129	short	310	high	539764	pericentromeric	5943	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	3675845	3675893	AT4TE16375	.	+	ROMANIAT5	Copia	LTR	48	tiny	49	low	542171	pericentromeric	8350	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr4	3675893	3693379	AT4TE16380	.	+	ATHILA2	Gypsy	LTR	17486	long	413	high	542219	pericentromeric	8398	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	3676561,3682623	3678225,3685441	+,+	transcript_id-"b29778d4-2c25-47b3-be25-88f780db06c2|3",transcript_id-"4aeb89f1-3069-448e-b4d5-a380a4c40eb4|5"
Chr4	3677556	3681531	AT4TE16385	.	+	ATLANTYS2	Gypsy	LTR	3975	medium	179	medium	543882	pericentromeric	10061	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	3681531	3691585	AT4TE16390	.	-	ATLANTYS2	Gypsy	LTR	10054	long	179	medium	547857	pericentromeric	14036	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	3682623,3685865	3685441,3685702	+,-	transcript_id-"4aeb89f1-3069-448e-b4d5-a380a4c40eb4|5",transcript_id-"b90c5cda-d282-401f-b884-8648e343174e|4"
Chr4	3693379	3697524	AT4TE16395	.	+	ATHILA6A	Gypsy	LTR	4145	medium	247	high	559705	pericentromeric	25884	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr4	3697524	3703860	AT4TE16400	.	+	ATHILA2	Gypsy	LTR	6336	long	413	high	563850	pericentromeric	30029	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	3700801,3702033	3702876,3702862	+,+	transcript_id-"ff71f9b6-5447-45e0-bc4b-44ea90b5dcba|3",transcript_id-"cf7177ed-67fc-416f-a9d3-605c774e9433|10"
Chr4	3706040	3706597	AT4TE16410	.	-	ATHILA4A	Gypsy	LTR	557	short	310	high	572366	pericentromeric	38545	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	3710703	3714764	AT4TE16430	.	-	ATLANTYS1	Gypsy	LTR	4061	medium	153	medium	577029	pericentromeric	43208	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	3714391	3714464	AT4TE16435	.	-	ATLANTYS2	Gypsy	LTR	73	tiny	179	medium	580717	pericentromeric	46896	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	3715045	3715740	AT4TE16440	.	-	TAT1_ATH	Gypsy	LTR	695	short	87	medium	581371	pericentromeric	47550	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	3716713	3716797	AT4TE16445	.	-	ATHILA4C	Gypsy	LTR	84	tiny	206	high	583039	pericentromeric	47701	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	3717056	3717083	AT4TE16450	.	-	ATHILA5	Gypsy	LTR	27	tiny	131	medium	583382	pericentromeric	47415	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr4	3717083	3717541	AT4TE16455	.	-	ATHILA7	Gypsy	LTR	458	short	134	medium	583409	pericentromeric	46957	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3718217	3720029	AT4TE16460	.	-	ATHILA4	Gypsy	LTR	1812	short	250	high	584543	pericentromeric	44469	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	3718591	3719181	AT4TE16465	.	-	ATHILA4D_LTR	Gypsy	LTR	590	short	106	medium	584917	pericentromeric	45317	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	3719265	3719535	AT4TE16470	.	-	ATCOPIA94	Copia	LTR	270	short	39	low	585591	pericentromeric	44963	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr4	3720534	3720757	AT4TE16475	.	+	ATHILA4A	Gypsy	LTR	223	short	310	high	586860	pericentromeric	43741	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	3720744,3720213,3720214,3720214,3720271	3719991,3720894,3720937,3721049,3720982	-,+,+,+,+	transcript_id-"894e0b49-59d9-46df-8444-8cf3c07d57da|3",transcript_id-"f4f4df13-4b09-4d64-a876-d0c3833a178a|3",transcript_id-"3cf5e212-e4f4-437c-956e-47bf4c7a910e|3",transcript_id-"5486d5b2-f21f-4878-8ba2-948697f93e95|5",transcript_id-"e7a95874-fba7-4fde-b7a9-6caf62c96f35|4"
Chr4	3720763	3721215	AT4TE16480	.	+	ATHILA4D_LTR	Gypsy	LTR	452	short	106	medium	587089	pericentromeric	43283	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	3720213,3720214,3720214,3720271	3720894,3720937,3721049,3720982	+,+,+,+	transcript_id-"f4f4df13-4b09-4d64-a876-d0c3833a178a|3",transcript_id-"3cf5e212-e4f4-437c-956e-47bf4c7a910e|3",transcript_id-"5486d5b2-f21f-4878-8ba2-948697f93e95|5",transcript_id-"e7a95874-fba7-4fde-b7a9-6caf62c96f35|4"
Chr4	3721419	3721784	AT4TE16485	.	-	TA11	L1	LINE	365	short	157	medium	587745	pericentromeric	42714	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3724205	3725015	AT4TE16495	.	-	ATREP10B	Helitron	RC	810	short	491	high	590531	pericentromeric	39483	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3726865	3728623	AT4TE16500	.	+	ATHAT7	HAT	DNA	1758	short	20	low	593191	pericentromeric	35875	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr4	3728623	3728649	AT4TE16505	.	+	ATHAT7	HAT	DNA	26	tiny	20	low	594949	pericentromeric	35849	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	3728649	3728865	AT4TE16510	.	+	ATHAT2	HAT	DNA	216	short	19	low	594975	pericentromeric	35633	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	3731150	3731235	AT4TE16520	.	-	ATREP5	Helitron	RC	85	tiny	624	high	597476	pericentromeric	33263	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	3731235	3732878	AT4TE16525	.	-	HELITRONY3	Helitron	RC	1643	short	1399	high	597561	pericentromeric	31620	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	3732924	3733292	AT4TE16530	.	+	ATLINE2	L1	LINE	368	short	138	medium	599250	pericentromeric	31206	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3733373	3733622	AT4TE16535	.	-	ATHILA	Gypsy	LTR	249	short	198	medium	599699	pericentromeric	30876	DCL3-RdDM	no-RdDM	.	.	.	.	.
Chr4	3733623	3734377	AT4TE16540	.	-	ATGP7	Gypsy	LTR	755	short	47	low	599948	pericentromeric	30121	.	.	LowExpressed	.	.	.	.
Chr4	3734377	3734452	AT4TE16545	.	-	ATGP6	Gypsy	LTR	75	tiny	25	low	600703	pericentromeric	30046	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	3734452	3734499	AT4TE16550	.	-	ATGP5	Gypsy	LTR	47	tiny	86	medium	600778	pericentromeric	29999	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	3734499	3734546	AT4TE16555	.	-	ATGP7	Gypsy	LTR	47	tiny	47	low	600825	pericentromeric	29952	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	3734615	3736025	AT4TE16560	.	-	ATGP7	Gypsy	LTR	1410	short	47	low	600941	pericentromeric	28473	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	3737109	3733890	-	transcript_id-"2aad647e-aa09-4335-ac9c-fd103d188b2f|3"
Chr4	3736028	3742064	AT4TE16565	.	-	ATHILA2	Gypsy	LTR	6036	long	413	high	602354	pericentromeric	22434	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	3739106	3737001	-	transcript_id-"e020c6be-b1f5-45a8-aad9-8838aaa52fbe|11"
Chr4	3742064	3750029	AT4TE16570	.	-	ATHILA6B	Gypsy	LTR	7965	long	134	medium	608390	pericentromeric	14469	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	3750029	3754223	AT4TE16575	.	-	ATGP7	Gypsy	LTR	4194	medium	47	low	616355	pericentromeric	10275	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3753282	3753473	AT4TE16580	.	-	ATHILA	Gypsy	LTR	192	short	198	medium	619607	pericentromeric	11025	.	.	.	.	.	.	.
Chr4	3754318	3754364	AT4TE16585	.	-	ATGP7	Gypsy	LTR	46	tiny	47	low	620644	pericentromeric	10134	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr4	3754376	3757795	AT4TE16590	.	+	ATLINE2	L1	LINE	3419	medium	138	medium	620702	pericentromeric	6703	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3757795	3758173	AT4TE16595	.	+	BRODYAGA1	MuDR	DNA	378	short	251	high	624121	pericentromeric	6325	no-CHH	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	3758301	3758436	AT4TE16600	.	-	SIMPLEHAT2	HAT	DNA	135	short	73	medium	624627	pericentromeric	6062	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	3760716	3760884	AT4TE16610	.	-	ATHAT1	HAT	DNA	168	short	105	medium	627042	pericentromeric	3614	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3762089	3762962	AT4TE16615	.	-	BOMZH2	MuDR	DNA	873	short	47	low	628415	pericentromeric	1536	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	3766718	3766790	AT4TE16630	.	+	ATREP5	Helitron	RC	72	tiny	624	high	633044	pericentromeric	279	no-CHH	no-CHH	.	.	.	.	.
Chr4	3766790	3766819	AT4TE16635	.	-	ATREP11	Helitron	RC	29	tiny	841	high	633116	pericentromeric	351	no-CHH	no-CHH	.	.	.	.	.
Chr4	3766819	3768072	AT4TE16640	.	-	ATREP11	Helitron	RC	1253	short	841	high	633145	pericentromeric	380	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	3767234	3767821	+	transcript_id-"a8525538-72b0-434d-bc3a-45709ca5cc82|4"
Chr4	3767045	3767958	AT4TE16645	.	-	HELITRON1	Helitron	RC	913	short	130	medium	633371	pericentromeric	606	no-RdDM	no-RdDM	ExpressedAndAnnotated	3767234	3767821	+	transcript_id-"a8525538-72b0-434d-bc3a-45709ca5cc82|4"
Chr4	3768072	3768130	AT4TE16650	.	-	ATREP11	Helitron	RC	58	tiny	841	high	634398	pericentromeric	1633	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	3768130	3769181	AT4TE16655	.	-	VANDAL18NB	MuDR	DNA	1051	short	19	low	634456	pericentromeric	1691	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	3769193	3770841	AT4TE16660	.	-	ATREP10D	Helitron	RC	1648	short	1295	high	635519	pericentromeric	2754	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	3770841	3771853	AT4TE16665	.	-	ATREP4	Helitron	RC	1012	short	832	high	637167	pericentromeric	4402	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	3771037	3771628	AT4TE16670	.	-	ATREP11	Helitron	RC	591	short	841	high	637363	pericentromeric	4598	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	3771628	3771740	AT4TE16675	.	-	BRODYAGA1	MuDR	DNA	112	short	251	high	637954	pericentromeric	5189	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr4	3772117	3772167	AT4TE16680	.	+	ATREP10D	Helitron	RC	50	tiny	1295	high	638443	pericentromeric	5678	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	3773803	3774332	AT4TE16685	.	-	HELITRONY3	Helitron	RC	529	short	1399	high	640129	pericentromeric	7364	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	3774332	3774883	AT4TE16690	.	-	ARNOLD3	MuDR	DNA	551	short	45	low	640658	pericentromeric	7893	no-CHH	no-CHH	.	.	.	.	.
Chr4	3774883	3775032	AT4TE16695	.	+	ATREP5	Helitron	RC	149	short	624	high	641209	pericentromeric	8444	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	3775326	3775346	AT4TE16700	.	-	HELITRONY1A	Helitron	RC	20	tiny	271	high	641652	pericentromeric	8887	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	3775346	3775538	AT4TE16705	.	-	HELITRONY1A	Helitron	RC	192	short	271	high	641672	pericentromeric	8907	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	3775540	3784013	AT4TE16710	.	+	VANDAL16	MuDR	DNA	8473	long	42	low	641866	pericentromeric	9101	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	3784013	3784080	AT4TE16715	.	-	HELITRONY1A	Helitron	RC	67	tiny	271	high	650339	pericentromeric	17574	no-RdDM	no-CHH	.	.	.	.	.
Chr4	3784080	3784413	AT4TE16720	.	+	ATREP4	Helitron	RC	333	short	832	high	650406	pericentromeric	17641	no-RdDM	no-CHH	.	.	.	.	.
Chr4	3784415	3794425	AT4TE16725	.	+	ATLANTYS1	Gypsy	LTR	10010	long	153	medium	650741	pericentromeric	17976	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	3790814,3794126	3790424,3794341	-,+	transcript_id-"bdb78dd6-a207-48fa-a24e-231593a828fa|6",transcript_id-"14ef126e-a251-49d9-b7a4-053e0456e216|4"
Chr4	3794439	3794751	AT4TE16730	.	-	HELITRON5	Helitron	RC	312	short	56	medium	660765	pericentromeric	28000	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3794751	3795527	AT4TE16735	.	-	ATREP1	Helitron	RC	776	short	498	high	661077	pericentromeric	28312	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3795527	3795558	AT4TE16740	.	-	HELITRON1	Helitron	RC	31	tiny	130	medium	661853	pericentromeric	29088	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	3795838	3799542	AT4TE16745	.	+	ATLINE1_6	L1	LINE	3704	medium	129	medium	662164	pericentromeric	29399	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr4	3799558	3800044	AT4TE16750	.	+	ATHILA4B_LTR	Gypsy	LTR	486	short	143	medium	665884	pericentromeric	33119	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr4	3800044	3800069	AT4TE16755	.	+	ATHILA4B_LTR	Gypsy	LTR	25	tiny	143	medium	666370	pericentromeric	33605	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	3802901	3803449	AT4TE16765	.	-	HELITRON5	Helitron	RC	548	short	56	medium	669227	pericentromeric	36462	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3803449	3803474	AT4TE16770	.	-	HELITRON2	Helitron	RC	25	tiny	194	medium	669775	pericentromeric	37010	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	3804967	3805608	AT4TE16775	.	-	ATMUN1	MuDR	DNA	641	short	107	medium	671293	pericentromeric	38528	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3809475	3809552	AT4TE16790	.	+	BRODYAGA1	MuDR	DNA	77	tiny	251	high	675801	pericentromeric	43036	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	3809552	3809771	AT4TE16795	.	-	ATMU10	MuDR	DNA	219	short	87	medium	675878	pericentromeric	43113	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	3809772	3810180	AT4TE16800	.	-	ATMU10	MuDR	DNA	408	short	87	medium	676098	pericentromeric	43333	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	3811870	3813399	AT4TE16805	.	-	ATHILA3	Gypsy	LTR	1529	short	243	high	678196	pericentromeric	45431	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	3813399	3813478	AT4TE16810	.	-	ATHILA3	Gypsy	LTR	79	tiny	243	high	679725	pericentromeric	46960	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	3813478	3819748	AT4TE16815	.	-	ATHILA3	Gypsy	LTR	6270	long	243	high	679804	pericentromeric	47039	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	3816166	3817905	AT4TE16820	.	+	VANDAL3	MuDR	DNA	1739	short	177	medium	682492	pericentromeric	49727	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	3818371	3818452	AT4TE16825	.	+	VANDAL3	MuDR	DNA	81	tiny	177	medium	684697	pericentromeric	51932	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3818465	3818578	AT4TE16830	.	+	ATLINE1A	L1	LINE	113	short	289	high	684791	pericentromeric	52026	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	3818578	3818616	AT4TE16835	.	+	VANDAL3	MuDR	DNA	38	tiny	177	medium	684904	pericentromeric	52139	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3818616	3818696	AT4TE16840	.	-	ATHILA3	Gypsy	LTR	80	tiny	243	high	684942	pericentromeric	52177	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr4	3819885	3827853	AT4TE16845	.	+	ATENSPM9	En-Spm	DNA	7968	long	97	medium	686211	pericentromeric	53446	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	3827853	3828546	AT4TE16850	.	+	ATENSPM9	En-Spm	DNA	693	short	97	medium	694179	pericentromeric	61414	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3828546	3828592	AT4TE16855	.	+	ATENSPM9	En-Spm	DNA	46	tiny	97	medium	694872	pericentromeric	62107	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	3830366	3830430	AT4TE16860	.	+	ATGP8	Gypsy	LTR	64	tiny	92	medium	696692	pericentromeric	63927	no-RdDM	no-CHH	.	.	.	.	.
Chr4	3831559	3832194	AT4TE16865	.	+	ATGP8	Gypsy	LTR	635	short	92	medium	697885	pericentromeric	65120	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	3832303	3833816	AT4TE16870	.	+	ATLANTYS1	Gypsy	LTR	1513	short	153	medium	698629	pericentromeric	65181	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	3833816	3833894	AT4TE16875	.	+	ATLANTYS2	Gypsy	LTR	78	tiny	179	medium	700142	pericentromeric	65103	RDR6-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	3834543	3836517	AT4TE16880	.	+	ATGP10	Gypsy	LTR	1974	short	165	medium	700869	pericentromeric	62480	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	3835252	3835378	AT4TE16885	.	+	ATGP10	Gypsy	LTR	126	short	165	medium	701578	pericentromeric	63619	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	3836517	3836662	AT4TE16890	.	+	ATGP10	Gypsy	LTR	145	short	165	medium	702843	pericentromeric	62335	no-RdDM	no-CHH	.	.	.	.	.
Chr4	3838637	3843995	AT4TE16900	.	-	ATHILA	Gypsy	LTR	5358	long	198	medium	704963	pericentromeric	55002	no-RdDM	no-RdDM	ExpressedAndAnnotated	3841614,3840378,3841614,3841614,3841614	3839409,3839417,3840851,3840963,3841098	-,-,-,-,-	transcript_id-"5858c3f4-2739-4aa5-a6a6-7a915ed394c9|38",transcript_id-"e810eae0-fc91-4953-8af0-66900a4a5c68|5",transcript_id-"c232e49b-200b-4342-8ea4-c555c9bc5cd5|6",transcript_id-"8d12413e-5f93-49d8-8bf0-993ba9ed5964|327",transcript_id-"a0386452-83e3-48c9-b419-ff89a8c44270|1281"
Chr4	3843995	3844627	AT4TE16905	.	-	ATHILA2	Gypsy	LTR	632	short	413	high	710321	pericentromeric	54370	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr4	3844627	3852229	AT4TE16910	.	-	ATHILA6A	Gypsy	LTR	7602	long	247	high	710953	pericentromeric	46768	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr4	3853113	3856100	AT4TE16915	.	+	ATCOPIA95	Copia	LTR	2987	medium	72	medium	719439	pericentromeric	42897	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3858618	3860582	AT4TE16925	.	+	ATGP10	Gypsy	LTR	1964	short	165	medium	724944	pericentromeric	38415	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	3860739	3860889	AT4TE16930	.	-	ATGP10	Gypsy	LTR	150	short	165	medium	727065	pericentromeric	38108	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	3862575	3862630	AT4TE16935	.	-	ATGP10	Gypsy	LTR	55	tiny	165	medium	728901	pericentromeric	36367	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr4	3864256	3864394	AT4TE16940	.	-	ATGP10	Gypsy	LTR	138	short	165	medium	730582	pericentromeric	34603	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3864858	3877300	AT4TE16945	.	-	ATHILA	Gypsy	LTR	12442	long	198	medium	731184	pericentromeric	21697	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	3868432,3869660,3869660,3869660	3867558,3867578,3868909,3869002	-,-,-,-	transcript_id-"18d95996-c7da-44d8-9145-e8288cad6e81|4",transcript_id-"5cb0adf9-7c1f-441a-876a-c2c0f0916338|10",transcript_id-"f97e8433-c580-4d8a-ac1e-bb069b14dec4|3",transcript_id-"38263b66-7c20-4070-a03a-a5bc2fed6f75|181"
Chr4	3877300	3877321	AT4TE16950	.	+	ATLANTYS3	Gypsy	LTR	21	tiny	142	medium	743626	pericentromeric	21676	no-RdDM	no-CHH	.	.	.	.	.
Chr4	3877321	3877972	AT4TE16955	.	+	ATLANTYS2	Gypsy	LTR	651	short	179	medium	743647	pericentromeric	21025	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	3880966	3881647	AT4TE16965	.	+	ATCOPIA37	Copia	LTR	681	short	32	low	747292	pericentromeric	17350	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	3881222	3881321	AT4TE16970	.	+	ATCOPIA37	Copia	LTR	99	tiny	32	low	747548	pericentromeric	17676	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	3883202	3885982	AT4TE16980	.	+	ATGP3	Gypsy	LTR	2780	medium	60	medium	749528	pericentromeric	13015	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	3885982	3886008	AT4TE16985	.	+	ATGP3	Gypsy	LTR	26	tiny	60	medium	752308	pericentromeric	12989	RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	3886417	3893274	AT4TE16990	.	-	VANDAL21	MuDR	DNA	6857	long	64	medium	752743	pericentromeric	5723	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	3886249,3889297	3886554,3888475	+,-	transcript_id-"f2378430-36f3-4c49-a561-1b1cbac93737",transcript_id-"4cbb728d-ba84-46e9-8e18-aef22094158d|21"
Chr4	3893274	3893294	AT4TE16995	.	-	VANDAL6	MuDR	DNA	20	tiny	89	medium	759600	pericentromeric	5703	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	3893294	3893433	AT4TE17000	.	-	ATREP5	Helitron	RC	139	short	624	high	759620	pericentromeric	5564	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	3893433	3894824	AT4TE17005	.	-	ATREP3	Helitron	RC	1391	short	1439	high	759759	pericentromeric	4173	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	3894824	3895072	AT4TE17010	.	+	ATREP4	Helitron	RC	248	short	832	high	761150	pericentromeric	3925	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	3895084	3895220	AT4TE17015	.	-	ATREP15	Helitron	RC	136	short	1003	high	761410	pericentromeric	3777	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	3895839	3895961	AT4TE17020	.	+	HELITRONY1C	Helitron	RC	122	short	120	medium	762165	pericentromeric	3036	no-CHH	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	3896052	3896090	AT4TE17025	.	+	ATREP4	Helitron	RC	38	tiny	832	high	762378	pericentromeric	2907	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	3896090	3896726	AT4TE17030	.	+	ATREP10D	Helitron	RC	636	short	1295	high	762416	pericentromeric	2271	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	3896726	3897856	AT4TE17035	.	+	ATREP2A	Helitron	RC	1130	short	116	medium	763052	pericentromeric	1141	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	3897856	3898129	AT4TE17040	.	-	ATREP3	Helitron	RC	273	short	1439	high	764182	pericentromeric	868	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	3898129	3898204	AT4TE17045	.	-	ATREP3	Helitron	RC	75	tiny	1439	high	764455	pericentromeric	793	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	3898204	3898867	AT4TE17050	.	+	HELITRONY1C	Helitron	RC	663	short	120	medium	764530	pericentromeric	130	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr4	3898867	3898918	AT4TE17055	.	-	ATREP10D	Helitron	RC	51	tiny	1295	high	765193	pericentromeric	79	no-CHH	no-CHH	.	.	.	.	.
Chr4	3902305	3903578	AT4TE17065	.	+	ATLANTYS1	Gypsy	LTR	1273	short	153	medium	768631	pericentromeric	716	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	3903578	3907337	AT4TE17070	.	-	ATHILA2	Gypsy	LTR	3759	medium	413	high	769904	pericentromeric	1989	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	3907359	3907454	AT4TE17075	.	-	ATHILA6A	Gypsy	LTR	95	tiny	247	high	773685	pericentromeric	5770	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	3907465	3908742	AT4TE17080	.	+	ATCOPIA41	Copia	LTR	1277	short	39	low	773791	pericentromeric	5876	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	3908742	3909251	AT4TE17085	.	+	ATCOPIA58	Copia	LTR	509	short	18	low	775068	pericentromeric	7153	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3909251	3910993	AT4TE17090	.	+	ATCOPIA41	Copia	LTR	1742	short	39	low	775577	pericentromeric	7662	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3910993	3911068	AT4TE17095	.	+	ATCOPIA41	Copia	LTR	75	tiny	39	low	777319	pericentromeric	9404	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3911076	3913861	AT4TE17100	.	+	ATCOPIA41	Copia	LTR	2785	medium	39	low	777402	pericentromeric	6831	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	3913861	3914190	AT4TE17105	.	+	ATCOPIA41	Copia	LTR	329	short	39	low	780187	pericentromeric	6502	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	3914190	3915199	AT4TE17110	.	+	ATCOPIA41	Copia	LTR	1009	short	39	low	780516	pericentromeric	5493	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	3914280	3914486	+	transcript_id-"23a2cad4-f589-4bd6-b56e-68669a7b5480|37"
Chr4	3915209	3916822	AT4TE17115	.	-	ATHILA6A	Gypsy	LTR	1613	short	247	high	781535	pericentromeric	3870	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	3916460	3915053	-	transcript_id-"287bf3bf-9a9c-4bd8-ba9b-9e49d9d3e4db|5"
Chr4	3916822	3919636	AT4TE17120	.	-	ATHILA6B	Gypsy	LTR	2814	medium	134	medium	783148	pericentromeric	1056	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3920125	3920188	AT4TE17125	.	-	TAT1_ATH	Gypsy	LTR	63	tiny	87	medium	786451	pericentromeric	504	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	3924584	3924736	AT4TE17140	.	+	ATLANTYS1	Gypsy	LTR	152	short	153	medium	790910	pericentromeric	147	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	3924737	3926515	AT4TE17145	.	+	TAT1_ATH	Gypsy	LTR	1778	short	87	medium	791063	pericentromeric	300	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	3926809	3929220	AT4TE17150	.	+	ATLANTYS1	Gypsy	LTR	2411	medium	153	medium	793135	pericentromeric	2372	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	3929220	3929251	AT4TE17155	.	+	ATLANTYS2	Gypsy	LTR	31	tiny	179	medium	795546	pericentromeric	4783	DCL3-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	3929251	3931431	AT4TE17160	.	-	ATHILA4A	Gypsy	LTR	2180	medium	310	high	795577	pericentromeric	4814	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	3931431	3931534	AT4TE17165	.	-	ATHILA4C	Gypsy	LTR	103	short	206	high	797757	pericentromeric	6994	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3931534	3931557	AT4TE17170	.	+	ATHILA4C	Gypsy	LTR	23	tiny	206	high	797860	pericentromeric	7097	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3931607	3935831	AT4TE17175	.	-	ATHILA4	Gypsy	LTR	4224	medium	250	high	797933	pericentromeric	7170	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	3935832	3937586	AT4TE17180	.	+	ATLANTYS2	Gypsy	LTR	1754	short	179	medium	802158	pericentromeric	11395	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	3937586	3939103	AT4TE17185	.	-	ATENSPM11	En-Spm	DNA	1517	short	47	low	803912	pericentromeric	13149	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	3938392	3938459	AT4TE17190	.	-	ATENSPM3	En-Spm	DNA	67	tiny	98	medium	804718	pericentromeric	13955	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	3940829	3945016	AT4TE17200	.	+	VANDAL3	MuDR	DNA	4187	medium	177	medium	807155	pericentromeric	16392	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	3945016	3950541	AT4TE17205	.	-	ATENSPM9	En-Spm	DNA	5525	long	97	medium	811342	pericentromeric	20579	no-RdDM	no-RdDM	ExpressedAndAnnotated	3948398	3945556	-	transcript_id-"95936867-768e-4d4f-a811-5cfd3959eb49|5"
Chr4	3957021	3965575	AT4TE17240	.	-	ATHILA2	Gypsy	LTR	8554	long	413	high	823347	pericentromeric	32584	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	3987765	3997945	AT4TE17360	.	-	ATHILA	Gypsy	LTR	10180	long	198	medium	854091	pericentromeric	47444	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	3990638,3990638,3993096	3988547,3989975,3990138	-,-,-	transcript_id-"3df70107-09fa-428e-af37-8463f50a9fb2|12",transcript_id-"acafbcb9-7faa-48f6-8403-0018c33819ed|166",transcript_id-"b46aa8eb-a7d0-4c7b-9b40-c287ed16cfe3|3"
Chr4	4015816	4016015	AT4TE17460	.	+	ROMANIAT5	Copia	LTR	199	short	49	low	882142	pericentromeric	29374	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	4016015	4016072	AT4TE17465	.	-	ATHILA6B	Gypsy	LTR	57	tiny	134	medium	882341	pericentromeric	29317	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr4	4016072	4024284	AT4TE17470	.	-	ATHILA6A	Gypsy	LTR	8212	long	247	high	882398	pericentromeric	21105	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	4018013	4017097	-	transcript_id-"8fab8a9c-fa84-4500-b21d-e24de9ecff44|3"
Chr4	4024289	4025213	AT4TE17475	.	-	ATHILA	Gypsy	LTR	924	short	198	medium	890615	pericentromeric	20176	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr4	4025213	4028757	AT4TE17480	.	-	ATHILA	Gypsy	LTR	3544	medium	198	medium	891539	pericentromeric	16632	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	4028843	4028874	AT4TE17485	.	-	ATHILA2	Gypsy	LTR	31	tiny	413	high	895169	pericentromeric	16515	no-RdDM	no-CHH	.	.	.	.	.
Chr4	4028874	4029503	AT4TE17490	.	-	ATHILA2	Gypsy	LTR	629	short	413	high	895200	pericentromeric	15886	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr4	4029503	4029780	AT4TE17495	.	-	ATHILA0_I	Gypsy	LTR	277	short	138	medium	895829	pericentromeric	15609	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4029780	4033921	AT4TE17500	.	-	ATHILA	Gypsy	LTR	4141	medium	198	medium	896106	pericentromeric	11468	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	4034673	4033084	-	transcript_id-"a8b8a67c-2e21-4713-9ddb-51c2bc57a18b|49"
Chr4	4033921	4035339	AT4TE17505	.	-	ATHILA	Gypsy	LTR	1418	short	198	medium	900247	pericentromeric	10050	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	4035339	4045318	AT4TE17510	.	+	ATHILA2	Gypsy	LTR	9979	long	413	high	901665	pericentromeric	71	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	4045318	4045616	AT4TE17515	.	-	ATLINE1_3A	L1	LINE	298	short	160	medium	911644	pericentromeric	0	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	4045618	4046750	AT4TE17520	.	+	ATHILA2	Gypsy	LTR	1132	short	413	high	911944	pericentromeric	0	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	4045472	4045757	+	transcript_id-"bc39ea95-49ac-4b78-8d09-9b3653ada030|4"
Chr4	4049311	4051037	AT4TE17530	.	+	ATHILA4	Gypsy	LTR	1726	short	250	high	915637	pericentromeric	3664	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4051037	4053615	AT4TE17535	.	+	ATHILA4A	Gypsy	LTR	2578	medium	310	high	917363	pericentromeric	5390	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	4069504	4070083	AT4TE17620	.	-	BRODYAGA2	MuDR	DNA	579	short	525	high	935830	pericentromeric	786	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	4070083	4070204	AT4TE17625	.	+	ARNOLDY1	MuDR	DNA	121	short	237	high	936409	pericentromeric	665	no-CHH	no-CHH	.	.	.	.	.
Chr4	4072229	4072811	AT4TE17635	.	+	HELITRONY1B	Helitron	RC	582	short	414	high	938555	pericentromeric	145	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	4072811	4073241	AT4TE17640	.	+	HELITRONY1A	Helitron	RC	430	short	271	high	939137	pericentromeric	727	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	4073305	4073434	AT4TE17645	.	-	ATHATN6	HAT	DNA	129	short	43	low	939631	pericentromeric	658	no-CHH	no-CHH	.	.	.	.	.
Chr4	4074882	4074936	AT4TE17650	.	+	ATREP1	Helitron	RC	54	tiny	498	high	941208	pericentromeric	337	no-CHH	no-CHH	.	.	.	.	.
Chr4	4074936	4077190	AT4TE17655	.	-	ATREP10D	Helitron	RC	2254	medium	1295	high	941262	pericentromeric	391	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr4	4077190	4081134	AT4TE17660	.	-	HELITRON5	Helitron	RC	3944	medium	56	medium	943516	pericentromeric	2645	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	4077890,4077890,4077892	4080497,4080499,4080582	+,+,+	transcript_id-"fa6501f2-d02b-4bdd-b34f-c7dd18c371c1|22",transcript_id-"274d20bf-b297-4727-b8ec-9c510f441b6a|10",transcript_id-"f318e4db-c950-46ff-af25-06345a0bf721|5"
Chr4	4080522	4080689	AT4TE17665	.	-	HELITRON5	Helitron	RC	167	short	56	medium	946848	pericentromeric	5977	no-CHH	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	4081140	4081670	AT4TE17670	.	+	ATDNA2T9C	MuDR	DNA	530	short	242	high	947466	pericentromeric	6595	no-CHH	no-CHH	.	.	.	.	.
Chr4	4081670	4081710	AT4TE17675	.	+	ATREP3	Helitron	RC	40	tiny	1439	high	947996	pericentromeric	7125	no-CHH	no-CHH	.	.	.	.	.
Chr4	4083155	4083904	AT4TE17680	.	-	ATREP1	Helitron	RC	749	short	498	high	949481	pericentromeric	8610	no-RdDM	no-CHH	.	.	.	.	.
Chr4	4084029	4084172	AT4TE17685	.	-	ATENSPM10	En-Spm	DNA	143	short	81	medium	950355	pericentromeric	9484	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	4084172	4084494	AT4TE17690	.	-	ATENSPM10	En-Spm	DNA	322	short	81	medium	950498	pericentromeric	9627	no-RdDM	no-CHH	.	.	.	.	.
Chr4	4084835	4086395	AT4TE17695	.	-	ATENSPM10	En-Spm	DNA	1560	short	81	medium	951161	pericentromeric	10290	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4086408	4086739	AT4TE17700	.	-	ATREP4	Helitron	RC	331	short	832	high	952734	pericentromeric	11863	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	4086754	4087090	AT4TE17705	.	-	ATREP15	Helitron	RC	336	short	1003	high	953080	pericentromeric	12209	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4087090	4088276	AT4TE17710	.	+	ATREP10B	Helitron	RC	1186	short	491	high	953416	pericentromeric	12545	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4088276	4088669	AT4TE17715	.	+	HELITRON2	Helitron	RC	393	short	194	medium	954602	pericentromeric	13731	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4088670	4088692	AT4TE17720	.	+	HELITRON2	Helitron	RC	23	tiny	194	medium	954995	pericentromeric	14124	.	.	.	.	.	.	.
Chr4	4089101	4089168	AT4TE17725	.	-	HELITRONY1D	Helitron	RC	67	tiny	756	high	955427	pericentromeric	14556	no-CHH	no-CHH	.	.	.	.	.
Chr4	4089168	4089775	AT4TE17730	.	-	HELITRONY1D	Helitron	RC	607	short	756	high	955494	pericentromeric	14623	no-CHH	no-CHH	.	.	.	.	.
Chr4	4092696	4093222	AT4TE17740	.	-	HELITRONY3	Helitron	RC	526	short	1399	high	959022	pericentromeric	18151	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4093222	4093242	AT4TE17745	.	+	ATREP3	Helitron	RC	20	tiny	1439	high	959548	pericentromeric	18677	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	4093242	4093297	AT4TE17750	.	-	ARNOLDY1	MuDR	DNA	55	tiny	237	high	959568	pericentromeric	18697	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4093297	4093536	AT4TE17755	.	+	ARNOLDY1	MuDR	DNA	239	short	237	high	959623	pericentromeric	18752	no-RdDM	no-CHH	.	.	.	.	.
Chr4	4093536	4097203	AT4TE17760	.	+	ARNOLDY1	MuDR	DNA	3667	medium	237	high	959862	pericentromeric	18991	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4097527	4103046	AT4TE17765	.	-	ATGP1	Gypsy	LTR	5519	long	144	medium	963853	pericentromeric	22982	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	4103046	4104168	AT4TE17770	.	-	ATREP10D	Helitron	RC	1122	short	1295	high	969372	pericentromeric	28501	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4103690	4103974	AT4TE17775	.	-	ATLINE1A	L1	LINE	284	short	289	high	970016	pericentromeric	29145	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4104623	4104703	AT4TE17780	.	+	ATCOPIA84	Copia	LTR	80	tiny	10	low	970949	pericentromeric	30078	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	4105861	4106498	AT4TE17785	.	+	ATREP10D	Helitron	RC	637	short	1295	high	972187	pericentromeric	31316	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4106498	4109853	AT4TE17790	.	+	HELITRONY2	Helitron	RC	3355	medium	198	medium	972824	pericentromeric	31953	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	4109859	4110151	AT4TE17795	.	+	HELITRONY3	Helitron	RC	292	short	1399	high	976185	pericentromeric	35314	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4110671	4111304	AT4TE17800	.	+	TAT1_ATH	Gypsy	LTR	633	short	87	medium	976997	pericentromeric	36126	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	4111648	4115509	AT4TE17805	.	+	ATLANTYS1	Gypsy	LTR	3861	medium	153	medium	977974	pericentromeric	37103	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4112469	4113088	AT4TE17810	.	+	ATLANTYS2	Gypsy	LTR	619	short	179	medium	978795	pericentromeric	37924	no-RdDM	no-CHH	.	.	.	.	.
Chr4	4113929	4113978	AT4TE17815	.	+	ATLANTYS2	Gypsy	LTR	49	tiny	179	medium	980255	pericentromeric	39384	no-CHH	no-CHH	.	.	.	.	.
Chr4	4120670	4120789	AT4TE17850	.	-	HELITRON2	Helitron	RC	119	short	194	medium	986996	pericentromeric	46125	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	4120789	4121747	AT4TE17855	.	+	ATREP1	Helitron	RC	958	short	498	high	987115	pericentromeric	46244	no-RdDM	no-CHH	.	.	.	.	.
Chr4	4121747	4121790	AT4TE17860	.	+	HELITRONY1E	Helitron	RC	43	tiny	447	high	988073	pericentromeric	47202	no-CHH	no-CHH	.	.	.	.	.
Chr4	4122032	4122155	AT4TE17865	.	+	ATENSPM10	En-Spm	DNA	123	short	81	medium	988358	pericentromeric	47487	no-CHH	no-CHH	.	.	.	.	.
Chr4	4122155	4123599	AT4TE17870	.	+	ATENSPM6	En-Spm	DNA	1444	short	151	medium	988481	pericentromeric	47610	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4123599	4124031	AT4TE17875	.	+	ATENSPM10	En-Spm	DNA	432	short	81	medium	989925	pericentromeric	48577	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	4124096	4124213	AT4TE17880	.	-	ATHILA4B_LTR	Gypsy	LTR	117	short	143	medium	990422	pericentromeric	48395	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr4	4124222	4127306	AT4TE17885	.	-	ATHILA4	Gypsy	LTR	3084	medium	250	high	990548	pericentromeric	45302	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr4	4127306	4127351	AT4TE17890	.	-	ATHILA4	Gypsy	LTR	45	tiny	250	high	993632	pericentromeric	45257	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	4127540	4128870	AT4TE17895	.	+	Unassigned	.	Unassigned	1330	short	.	low	993866	pericentromeric	43738	no-RdDM	no-CHH	.	.	.	.	.
Chr4	4129513	4130008	AT4TE17900	.	-	ATCOPIA16	Copia	LTR	495	short	12	low	995839	pericentromeric	42600	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	4130008	4130039	AT4TE17905	.	-	HELITRON4	Helitron	RC	31	tiny	199	medium	996334	pericentromeric	42569	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	4130039	4131118	AT4TE17910	.	-	HELITRON4	Helitron	RC	1079	short	199	medium	996365	pericentromeric	41490	no-RdDM	no-CHH	.	.	.	.	.
Chr4	4132314	4132840	AT4TE17915	.	+	ATLINEIII	L1	LINE	526	short	196	medium	998640	pericentromeric	39768	no-RdDM	no-CHH	.	.	.	.	.
Chr4	4133098	4133382	AT4TE17920	.	-	ATLINE1A	L1	LINE	284	short	289	high	999424	pericentromeric	39226	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4133383	4142040	AT4TE17925	.	+	ATHILA4C	Gypsy	LTR	8657	long	206	high	999709	pericentromeric	30568	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	4139334	4139378	AT4TE17930	.	-	ATHILA4A	Gypsy	LTR	44	tiny	310	high	1005660	pericentromeric	33230	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr4	4139378	4139398	AT4TE17935	.	+	ATHILA4C	Gypsy	LTR	20	tiny	206	high	1005704	pericentromeric	33210	no-CHH	no-CHH	.	.	.	.	.
Chr4	4142040	4143606	AT4TE17945	.	-	ATLINE1A	L1	LINE	1566	short	289	high	1008366	pericentromeric	29002	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4143606	4143845	AT4TE17950	.	-	ATLINE1A	L1	LINE	239	short	289	high	1009932	pericentromeric	28763	no-RdDM	no-CHH	.	.	.	.	.
Chr4	4143992	4144590	AT4TE17955	.	-	HELITRONY3	Helitron	RC	598	short	1399	high	1010318	pericentromeric	28018	no-CHH	no-CHH	.	.	.	.	.
Chr4	4144774	4145339	AT4TE17960	.	-	ATREP10A	Helitron	RC	565	short	279	high	1011100	pericentromeric	27269	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4145359	4145556	AT4TE17965	.	-	ATREP3	Helitron	RC	197	short	1439	high	1011685	pericentromeric	27052	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4145556	4155602	AT4TE17970	.	-	HELITRON4	Helitron	RC	10046	long	199	medium	1011882	pericentromeric	17006	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	4146126	4148187	AT4TE17975	.	+	ATREP3	Helitron	RC	2061	medium	1439	high	1012452	pericentromeric	24421	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4155602	4158054	AT4TE18010	.	-	ATHILA4A	Gypsy	LTR	2452	medium	310	high	1021928	pericentromeric	14554	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	4158054	4162124	AT4TE18015	.	-	ATHILA4	Gypsy	LTR	4070	medium	250	high	1024380	pericentromeric	10484	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	4162641	4161727	-	transcript_id-"365064c4-db8b-417e-a77b-543a20448fe9|3"
Chr4	4162124	4163846	AT4TE18020	.	-	HELITRON4	Helitron	RC	1722	short	199	medium	1028450	pericentromeric	8762	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	4162641	4161727	-	transcript_id-"365064c4-db8b-417e-a77b-543a20448fe9|3"
Chr4	4163846	4163897	AT4TE18025	.	-	HELITRON4	Helitron	RC	51	tiny	199	medium	1030172	pericentromeric	8711	no-CHH	no-CHH	.	.	.	.	.
Chr4	4163936	4164140	AT4TE18030	.	-	HELITRON3	Helitron	RC	204	short	53	medium	1030262	pericentromeric	8468	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4164140	4171247	AT4TE18035	.	-	HELITRON4	Helitron	RC	7107	long	199	medium	1030466	pericentromeric	1361	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	4171247	4171848	AT4TE18040	.	-	HELITRONY3	Helitron	RC	601	short	1399	high	1037573	pericentromeric	760	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	4172160	4172296	AT4TE18045	.	-	ATGP5	Gypsy	LTR	136	short	86	medium	1038486	pericentromeric	312	no-RdDM	no-CHH	.	.	.	.	.
Chr4	4172296	4175930	AT4TE18050	.	-	ATGP5	Gypsy	LTR	3634	medium	86	medium	1038622	pericentromeric	0	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4176044	4176305	AT4TE18055	.	-	ATHILA2	Gypsy	LTR	261	short	413	high	1042370	pericentromeric	817	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	4176305	4180902	AT4TE18060	.	-	ATHILA6A	Gypsy	LTR	4597	medium	247	high	1042631	pericentromeric	1078	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	4180902	4186072	AT4TE18065	.	-	ATHILA2	Gypsy	LTR	5170	long	413	high	1047228	pericentromeric	5675	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	4186072	4187540	AT4TE18070	.	+	ATHILA6B	Gypsy	LTR	1468	short	134	medium	1052398	pericentromeric	4888	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4187540	4191690	AT4TE18075	.	+	ATHILA	Gypsy	LTR	4150	medium	198	medium	1053866	pericentromeric	738	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	4193307	4195577	AT4TE18080	.	+	ATREP10D	Helitron	RC	2270	medium	1295	high	1059633	pericentromeric	172	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	4199492	4199534	AT4TE18100	.	+	ATREP3	Helitron	RC	42	tiny	1439	high	1065818	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	4199534	4199793	AT4TE18105	.	+	ATTIRTA1	Tc1	DNA	259	short	95	medium	1065860	pericentromeric	23	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	4199793	4200203	AT4TE18110	.	-	BRODYAGA2	MuDR	DNA	410	short	525	high	1066119	pericentromeric	282	no-CHH	no-CHH	.	.	.	.	.
Chr4	4207160	4208174	AT4TE18150	.	-	HELITRONY3	Helitron	RC	1014	short	1399	high	1073486	pericentromeric	2024	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4208174	4208317	AT4TE18155	.	-	LIMPET1	MuDR	DNA	143	short	116	medium	1074500	pericentromeric	3038	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4208774	4209015	AT4TE18160	.	+	ATREP18	.	DNA	241	short	391	high	1075100	pericentromeric	3638	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	4209026	4214178	AT4TE18165	.	-	ATHILA5	Gypsy	LTR	5152	long	131	medium	1075352	pericentromeric	3890	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	4214409	4214442	AT4TE18170	.	+	ATENSPM9	En-Spm	DNA	33	tiny	97	medium	1080735	pericentromeric	9273	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4214442	4216255	AT4TE18175	.	+	ATENSPM6	En-Spm	DNA	1813	short	151	medium	1080768	pericentromeric	9306	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4216255	4217459	AT4TE18180	.	-	ATHILA5	Gypsy	LTR	1204	short	131	medium	1082581	pericentromeric	11119	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4217459	4217802	AT4TE18185	.	+	ATENSPM10	En-Spm	DNA	343	short	81	medium	1083785	pericentromeric	12323	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4218180	4218838	AT4TE18190	.	+	ATENSPM11	En-Spm	DNA	658	short	47	low	1084506	pericentromeric	13044	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4218838	4219565	AT4TE18195	.	+	ATREP18	.	DNA	727	short	391	high	1085164	pericentromeric	13702	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4221543	4232539	AT4TE18205	.	-	HELITRONY2	Helitron	RC	10996	long	198	medium	1087869	pericentromeric	16407	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	4232539	4232564	AT4TE18210	.	-	VANDAL3	MuDR	DNA	25	tiny	177	medium	1098865	pericentromeric	27403	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4232564	4234429	AT4TE18215	.	-	VANDAL3	MuDR	DNA	1865	short	177	medium	1098890	pericentromeric	27428	no-RdDM	no-RdDM	ExpressedAndAnnotated	4232666,4232666,4232667	4233895,4233948,4234701	+,+,+	transcript_id-"b3312896-9eae-499a-a943-ae8393a526b3|13",transcript_id-"45d1442d-a5d3-4332-a5a2-185d27e672bb|3",transcript_id-"381fa723-4d62-4580-b193-e0861329161f|4"
Chr4	4234437	4235386	AT4TE18220	.	-	ATHILA8A	Gypsy	LTR	949	short	97	medium	1100763	pericentromeric	29301	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	4235860	4238317	AT4TE18225	.	-	ATGP7	Gypsy	LTR	2457	medium	47	low	1102186	pericentromeric	30724	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4238317	4238355	AT4TE18230	.	-	ATGP5	Gypsy	LTR	38	tiny	86	medium	1104643	pericentromeric	33181	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4238362	4238916	AT4TE18235	.	+	ATHPOGON1	Pogo	DNA	554	short	174	medium	1104688	pericentromeric	33226	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4238916	4239050	AT4TE18240	.	+	HELITRONY3	Helitron	RC	134	short	1399	high	1105242	pericentromeric	33780	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4239122	4249806	AT4TE18245	.	+	ATHILA	Gypsy	LTR	10684	long	198	medium	1105448	pericentromeric	33986	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	4246846,4246846,4246846,4246846,4247789,4247340	4247346,4247476,4247569,4248993,4247127,4247579	+,+,+,+,-,+	transcript_id-"3cd8c1b3-c01b-4f92-9cca-f3f127b6f077|15",transcript_id-"f51e6102-2ee1-4099-962b-445451c53d0c|22",transcript_id-"ee2aa19c-70dd-4a0a-954b-7f793f653ea1|3",transcript_id-"331e099b-a77f-46c2-9535-f602f37372f3|35",transcript_id-"8b47826f-ab70-4712-878f-f11937a7ad57|4",transcript_id-"c1a25c41-7d54-4dc1-8137-ef6548da6e8d|5"
Chr4	4249806	4250067	AT4TE18250	.	-	ATGP5	Gypsy	LTR	261	short	86	medium	1116132	pericentromeric	44670	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	4251660	4252255	AT4TE18255	.	-	ATHILA8A	Gypsy	LTR	595	short	97	medium	1117986	pericentromeric	46524	no-RdDM	no-CHH	.	.	.	.	.
Chr4	4252255	4255321	AT4TE18260	.	-	VANDAL3	MuDR	DNA	3066	medium	177	medium	1118581	pericentromeric	47119	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4252461	4254274	AT4TE18265	.	-	ATGP10	Gypsy	LTR	1813	short	165	medium	1118787	pericentromeric	47325	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4255321	4261201	AT4TE18270	.	+	ATHILA4A	Gypsy	LTR	5880	long	310	high	1121647	pericentromeric	50185	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	4255637	4256825	AT4TE18275	.	+	ATHILA4C	Gypsy	LTR	1188	short	206	high	1121963	pericentromeric	50501	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	4261201	4261237	AT4TE18290	.	+	ATHILA4A	Gypsy	LTR	36	tiny	310	high	1127527	pericentromeric	53847	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	4261237	4263451	AT4TE18295	.	-	VANDAL3	MuDR	DNA	2214	medium	177	medium	1127563	pericentromeric	51633	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	4263451	4264598	AT4TE18300	.	-	VANDAL3	MuDR	DNA	1147	short	177	medium	1129777	pericentromeric	50486	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4263571	4264582	AT4TE18305	.	-	VANDAL3	MuDR	DNA	1011	short	177	medium	1129897	pericentromeric	50502	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4264802	4269497	AT4TE18310	.	-	VANDAL3	MuDR	DNA	4695	medium	177	medium	1131128	pericentromeric	45587	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	4265742,4265742	4266450,4266518	+,+	transcript_id-"a5ea1a45-866a-4cc3-9d80-2403056639e3|4",transcript_id-"d2886df6-e843-42f7-96d1-61fecf796109|4"
Chr4	4269499	4279994	AT4TE18315	.	-	ATHILA3	Gypsy	LTR	10495	long	243	high	1135825	pericentromeric	35090	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	4270687	4270409	-	transcript_id-"5dbc43f5-2f22-4de7-8f81-cc546024c519|3"
Chr4	4279996	4281711	AT4TE18320	.	+	ATHILA3	Gypsy	LTR	1715	short	243	high	1146322	pericentromeric	33373	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	4281711	4281761	AT4TE18325	.	+	ATHILA5	Gypsy	LTR	50	tiny	131	medium	1148037	pericentromeric	33323	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4281761	4288696	AT4TE18330	.	+	ATHILA3	Gypsy	LTR	6935	long	243	high	1148087	pericentromeric	26388	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	4285803,4285803	4286381,4287778	+,+	transcript_id-"20d864d8-3fec-4f52-94c6-3872f1bebac0|3",transcript_id-"d5794290-bf80-4ef9-ad40-95707307d29d|7"
Chr4	4288698	4292575	AT4TE18335	.	-	VANDAL3	MuDR	DNA	3877	medium	177	medium	1155024	pericentromeric	22509	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	4290692	4291194	AT4TE18340	.	-	VANDAL3	MuDR	DNA	502	short	177	medium	1157018	pericentromeric	23890	no-RdDM	no-CHH	.	.	.	.	.
Chr4	4292575	4293299	AT4TE18345	.	+	HELITRON4	Helitron	RC	724	short	199	medium	1158901	pericentromeric	21785	no-RdDM	no-CHH	.	.	.	.	.
Chr4	4293464	4294059	AT4TE18350	.	+	ATREP1	Helitron	RC	595	short	498	high	1159790	pericentromeric	21025	no-RdDM	no-CHH	.	.	.	.	.
Chr4	4294059	4294663	AT4TE18355	.	+	HELITRON5	Helitron	RC	604	short	56	medium	1160385	pericentromeric	20421	no-RdDM	no-RdDM	ExpressedAndAnnotated	4294193,4294197	4295124,4295120	+,+	transcript_id-"9bd45211-dd52-441d-94f8-59ce04044932|7",transcript_id-"9261f5df-1974-435b-bd45-8fb50359f445|9"
Chr4	4294663	4297733	AT4TE18360	.	+	ATHILA4	Gypsy	LTR	3070	medium	250	high	1160989	pericentromeric	17351	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	4294193,4294197	4295124,4295120	+,+	transcript_id-"9bd45211-dd52-441d-94f8-59ce04044932|7",transcript_id-"9261f5df-1974-435b-bd45-8fb50359f445|9"
Chr4	4297733	4306264	AT4TE18365	.	-	ATHILA4C	Gypsy	LTR	8531	long	206	high	1164059	pericentromeric	8820	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	4301660	4299893	-	transcript_id-"0d53c6a7-9697-4bb8-84a0-13da0c5eab94|7"
Chr4	4306264	4307428	AT4TE18370	.	+	ATHILA4	Gypsy	LTR	1164	short	250	high	1172590	pericentromeric	7656	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	4307428	4307636	AT4TE18375	.	+	ATHILA4A	Gypsy	LTR	208	short	310	high	1173754	pericentromeric	7448	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4307636	4309187	AT4TE18380	.	+	ATHILA4A	Gypsy	LTR	1551	short	310	high	1173962	pericentromeric	5897	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	4309187	4314013	AT4TE18385	.	+	HELITRON5	Helitron	RC	4826	medium	56	medium	1175513	pericentromeric	1071	no-RdDM	no-RdDM	ExpressedAndAnnotated	4309984,4309995,4309998,4310010	4311937,4311932,4311937,4311937	+,+,+,+	transcript_id-"6a33f84a-6c11-472b-8172-0b43bb90463c|8",transcript_id-"aa62b1d8-10ea-43b7-bfb7-52c1f2c5add9|7",transcript_id-"896bebe9-079b-42fc-ac64-dcb111a34adf|3",transcript_id-"e6bdd910-4a6a-4761-9512-da70011ae3e7|6"
Chr4	4309680	4309896	AT4TE18390	.	+	ATENSPM3	En-Spm	DNA	216	short	98	medium	1176006	pericentromeric	5188	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	4310051	4310239	AT4TE18395	.	+	VANDAL17	MuDR	DNA	188	short	178	medium	1176377	pericentromeric	4845	no-CHH	no-CHH	ExpressedAndAnnotated	4309984,4309995,4309998,4310010	4311937,4311932,4311937,4311937	+,+,+,+	transcript_id-"6a33f84a-6c11-472b-8172-0b43bb90463c|8",transcript_id-"aa62b1d8-10ea-43b7-bfb7-52c1f2c5add9|7",transcript_id-"896bebe9-079b-42fc-ac64-dcb111a34adf|3",transcript_id-"e6bdd910-4a6a-4761-9512-da70011ae3e7|6"
Chr4	4312119	4312272	AT4TE18405	.	+	ATENSPM7	En-Spm	DNA	153	short	74	medium	1178445	pericentromeric	2812	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr4	4315375	4316227	AT4TE18415	.	+	ATREP4	Helitron	RC	852	short	832	high	1181701	pericentromeric	0	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	4317101	4317157	AT4TE18420	.	-	ATLINE1_1	L1	LINE	56	tiny	61	medium	1183427	pericentromeric	1705	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	4317157	4319612	AT4TE18425	.	-	ATLINE1_2	L1	LINE	2455	medium	41	low	1183483	pericentromeric	1761	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4319629	4320821	AT4TE18430	.	-	ATLINE1_1	L1	LINE	1192	short	61	medium	1185955	pericentromeric	4233	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4320821	4333493	AT4TE18435	.	+	ATENSPM6	En-Spm	DNA	12672	long	151	medium	1187147	pericentromeric	5425	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	4325916,4328883	4329290,4329233	+,+	transcript_id-"a835bd9d-449e-4b34-91e0-d06993bc100e|3",transcript_id-"8c9b8d56-7e02-46b6-873c-d0718dba8ac0|3"
Chr4	4328377	4328695	AT4TE18440	.	+	ATHILA	Gypsy	LTR	318	short	198	medium	1194703	pericentromeric	12981	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr4	4328695	4332395	AT4TE18445	.	+	ATHILA	Gypsy	LTR	3700	medium	198	medium	1195021	pericentromeric	12952	no-RdDM	no-RdDM	ExpressedAndAnnotated	4325916,4328883	4329290,4329233	+,+	transcript_id-"a835bd9d-449e-4b34-91e0-d06993bc100e|3",transcript_id-"8c9b8d56-7e02-46b6-873c-d0718dba8ac0|3"
Chr4	4333501	4334229	AT4TE18450	.	-	ATLINE1_1	L1	LINE	728	short	61	medium	1199827	pericentromeric	11118	no-CHH	no-CHH	.	.	.	.	.
Chr4	4334410	4334727	AT4TE18455	.	+	HELITRONY1A	Helitron	RC	317	short	271	high	1200736	pericentromeric	10620	no-CHH	no-CHH	.	.	.	.	.
Chr4	4334727	4335686	AT4TE18460	.	-	HELITRONY1D	Helitron	RC	959	short	756	high	1201053	pericentromeric	9661	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr4	4335686	4335931	AT4TE18465	.	+	VANDAL8	MuDR	DNA	245	short	123	medium	1202012	pericentromeric	9416	no-RdDM	no-CHH	.	.	.	.	.
Chr4	4335931	4345859	AT4TE18470	.	+	VANDAL8	MuDR	DNA	9928	long	123	medium	1202257	pericentromeric	0	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	4340302,4340305,4340857	4341263,4341202,4341294	+,+,+	transcript_id-"ae62339a-a7bf-4c1b-9649-684a4ecd2731|15",transcript_id-"b20c85b4-9f8d-4912-9440-cb8820fd31f4|7",transcript_id-"082214b7-1293-45f2-9e86-788c8f0dd9c5|5"
Chr4	4346460	4346813	AT4TE18475	.	+	ATDNA12T3_2	.	DNA	353	short	660	high	1212786	pericentromeric	485	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4346967	4347746	AT4TE18480	.	-	VANDAL22	MuDR	DNA	779	short	48	low	1213293	pericentromeric	992	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	4347795	4352258	AT4TE18485	.	-	ATHILA3	Gypsy	LTR	4463	medium	243	high	1214121	pericentromeric	1820	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr4	4352258	4352605	AT4TE18490	.	-	ATHILA5	Gypsy	LTR	347	short	131	medium	1218584	pericentromeric	6046	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	4356087	4373281	AT4TE18500	.	+	ATLANTYS1	Gypsy	LTR	17194	long	153	medium	1222413	pericentromeric	0	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	4365402,4366679	4365168,4365300	-,-	transcript_id-"5452535f-2c04-4f5b-ab52-82c115a20226|3",transcript_id-"e57e834f-3026-410a-974b-c13a564712f8|5"
Chr4	4358129	4358579	AT4TE18505	.	-	ATENSPM3	En-Spm	DNA	451	short	98	medium	1224454	pericentromeric	0	.	.	LowExpressed	.	.	.	.
Chr4	4359957	4360293	AT4TE18510	.	-	ATENSPM3	En-Spm	DNA	337	short	98	medium	1226282	pericentromeric	755	.	.	LowExpressed	.	.	.	.
Chr4	4368988	4373061	AT4TE18560	.	-	ATHAT1	HAT	DNA	4073	medium	105	medium	1235314	pericentromeric	9787	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	4373288	4375260	AT4TE18565	.	-	ATDNAI27T9C	MuDR	DNA	1972	short	108	medium	1239614	pericentromeric	14087	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	4375262	4375377	AT4TE18570	.	+	ATLANTYS1	Gypsy	LTR	115	short	153	medium	1241588	pericentromeric	16061	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4377964	4378484	AT4TE18580	.	+	ATLANTYS1	Gypsy	LTR	520	short	153	medium	1244290	pericentromeric	18763	no-RdDM	no-CHH	.	.	.	.	.
Chr4	4380388	4380439	AT4TE18590	.	-	ATHILA5	Gypsy	LTR	51	tiny	131	medium	1246714	pericentromeric	21187	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	4380439	4381896	AT4TE18595	.	-	ATHILA5	Gypsy	LTR	1457	short	131	medium	1246765	pericentromeric	21238	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	4381896	4382145	AT4TE18600	.	-	ATHILA2	Gypsy	LTR	249	short	413	high	1248222	pericentromeric	22695	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	4382145	4385360	AT4TE18605	.	-	ATHILA3	Gypsy	LTR	3215	medium	243	high	1248471	pericentromeric	22944	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4385360	4388910	AT4TE18610	.	+	ATHILA3	Gypsy	LTR	3550	medium	243	high	1251686	pericentromeric	26159	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr4	4389282	4390340	AT4TE18615	.	+	ATHILA5	Gypsy	LTR	1058	short	131	medium	1255608	pericentromeric	30081	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	4390340	4390391	AT4TE18620	.	+	ATHILA5	Gypsy	LTR	51	tiny	131	medium	1256666	pericentromeric	31139	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	4390434	4390976	AT4TE18625	.	+	ATHILA5	Gypsy	LTR	542	short	131	medium	1256760	pericentromeric	31233	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	4390976	4393232	AT4TE18630	.	+	ATHILA0_I	Gypsy	LTR	2256	medium	138	medium	1257302	pericentromeric	31775	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	4393232	4394249	AT4TE18635	.	-	ATHILA0_I	Gypsy	LTR	1017	short	138	medium	1259558	pericentromeric	34031	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	4394249	4399345	AT4TE18640	.	-	VANDAL22	MuDR	DNA	5096	long	48	low	1260575	pericentromeric	35048	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	4395049	4395468	+	transcript_id-"9b170b71-4091-4cd5-bb7d-3ab48ba1ad7e|13"
Chr4	4399485	4401020	AT4TE18645	.	-	ATCOPIA42	Copia	LTR	1535	short	35	low	1265811	pericentromeric	40284	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	4400047	4399528	-	transcript_id-"0ee8b69a-5f7d-4e94-a706-a10fa87a2763|3"
Chr4	4401023	4402351	AT4TE18650	.	-	ATHILA4B_LTR	Gypsy	LTR	1328	short	143	medium	1267349	pericentromeric	41822	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	4402351	4402745	AT4TE18655	.	-	ATHILA4A	Gypsy	LTR	394	short	310	high	1268677	pericentromeric	43150	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	4402745	4402810	AT4TE18660	.	-	ATHILA2	Gypsy	LTR	65	tiny	413	high	1269071	pericentromeric	43544	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	4402810	4403537	AT4TE18665	.	-	ATHILA2	Gypsy	LTR	727	short	413	high	1269136	pericentromeric	43609	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4403537	4406106	AT4TE18670	.	-	ATHILA6A	Gypsy	LTR	2569	medium	247	high	1269863	pericentromeric	44336	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	4406106	4406532	AT4TE18675	.	-	ATHILA6A	Gypsy	LTR	426	short	247	high	1272432	pericentromeric	46905	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	4406273	4406393	AT4TE18680	.	-	ATHILA6A	Gypsy	LTR	120	short	247	high	1272599	pericentromeric	47072	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	4406532	4407054	AT4TE18685	.	-	ATHILA2	Gypsy	LTR	522	short	413	high	1272858	pericentromeric	47331	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	4407054	4407850	AT4TE18690	.	-	ATHILA6B	Gypsy	LTR	796	short	134	medium	1273380	pericentromeric	47853	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	4407851	4410665	AT4TE18695	.	+	ATHILA2	Gypsy	LTR	2814	medium	413	high	1274177	pericentromeric	46036	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	4410665	4414369	AT4TE18700	.	+	ATHILA6B	Gypsy	LTR	3704	medium	134	medium	1276991	pericentromeric	42332	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	4414369	4416095	AT4TE18705	.	+	ATHILA6A	Gypsy	LTR	1726	short	247	high	1280695	pericentromeric	40606	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	4414439,4414500	4416296,4417550	+,+	transcript_id-"94839d7f-9fe1-4f26-8b37-f7347abb774d|3",transcript_id-"522681e6-05cd-4988-a414-f3b088ab68f1|3"
Chr4	4414903	4414935	AT4TE18710	.	+	ATHILA2	Gypsy	LTR	32	tiny	413	high	1281229	pericentromeric	41766	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr4	4416095	4416803	AT4TE18715	.	+	ATHILA2	Gypsy	LTR	708	short	413	high	1282421	pericentromeric	39898	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	4416803	4422012	AT4TE18720	.	+	ATHILA3	Gypsy	LTR	5209	long	243	high	1283129	pericentromeric	34689	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	4422012	4422182	AT4TE18725	.	+	ATHILA3	Gypsy	LTR	170	short	243	high	1288338	pericentromeric	34519	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	4422208	4424307	AT4TE18730	.	+	ATHILA5	Gypsy	LTR	2099	medium	131	medium	1288534	pericentromeric	32394	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4424307	4425021	AT4TE18735	.	+	ATHILA3	Gypsy	LTR	714	short	243	high	1290633	pericentromeric	31680	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr4	4425021	4428521	AT4TE18740	.	+	ATHILA2	Gypsy	LTR	3500	medium	413	high	1291347	pericentromeric	28180	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	4428521	4429909	AT4TE18745	.	+	ATHILA0_I	Gypsy	LTR	1388	short	138	medium	1294847	pericentromeric	26792	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	4429911	4429975	AT4TE18750	.	+	ATHILA2	Gypsy	LTR	64	tiny	413	high	1296237	pericentromeric	26726	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	4429975	4436782	AT4TE18755	.	+	ATHILA2	Gypsy	LTR	6807	long	413	high	1296301	pericentromeric	19919	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	4431119	4431458	AT4TE18760	.	+	ATHILA2	Gypsy	LTR	339	short	413	high	1297445	pericentromeric	25243	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	4431460	4434093	AT4TE18765	.	+	ATHILA3	Gypsy	LTR	2633	medium	243	high	1297786	pericentromeric	22608	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	4436794	4441944	AT4TE18775	.	-	ATHILA6A	Gypsy	LTR	5150	long	247	high	1303120	pericentromeric	14757	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr4	4441944	4442033	AT4TE18780	.	-	ATHILA0_I	Gypsy	LTR	89	tiny	138	medium	1308270	pericentromeric	14668	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4442033	4444300	AT4TE18785	.	-	ATHILA4A	Gypsy	LTR	2267	medium	310	high	1308359	pericentromeric	12401	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	4444417	4445033	AT4TE18790	.	-	ATGP8	Gypsy	LTR	616	short	92	medium	1310743	pericentromeric	11668	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	4446040	4446122	AT4TE18795	.	-	ATGP8	Gypsy	LTR	82	tiny	92	medium	1312366	pericentromeric	10579	no-RdDM	no-CHH	.	.	.	.	.
Chr4	4446833	4446854	AT4TE18800	.	+	HELITRON3	Helitron	RC	21	tiny	53	medium	1313159	pericentromeric	9847	no-RdDM	no-CHH	.	.	.	.	.
Chr4	4446854	4448711	AT4TE18805	.	+	HELITRON4	Helitron	RC	1857	short	199	medium	1313180	pericentromeric	7990	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	4448711	4448932	AT4TE18810	.	+	HELITRON2	Helitron	RC	221	short	194	medium	1315037	pericentromeric	7769	PolIV-and-RDR6-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	4449637	4450219	AT4TE18815	.	-	HELITRONY1B	Helitron	RC	582	short	414	high	1315963	pericentromeric	6482	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr4	4450225	4450280	AT4TE18820	.	+	ATHILA0_I	Gypsy	LTR	55	tiny	138	medium	1316551	pericentromeric	6421	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4450280	4456162	AT4TE18825	.	+	ATHILA0_I	Gypsy	LTR	5882	long	138	medium	1316606	pericentromeric	539	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr4	4457006	4457400	AT4TE18830	.	-	ATGP6	Gypsy	LTR	394	short	25	low	1323332	pericentromeric	0	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4459765	4459830	AT4TE18840	.	-	ATGP5	Gypsy	LTR	65	tiny	86	medium	1326091	pericentromeric	923	no-RdDM	no-CHH	.	.	.	.	.
Chr4	4459830	4462892	AT4TE18845	.	-	ATGP5	Gypsy	LTR	3062	medium	86	medium	1326156	pericentromeric	18	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4467119	4467241	AT4TE18860	.	+	ATMU2	MuDR	DNA	122	short	64	medium	1333445	pericentromeric	0	no-RdDM	no-CHH	.	.	.	.	.
Chr4	4467247	4480850	AT4TE18865	.	-	VANDAL3	MuDR	DNA	13603	long	177	medium	1333573	pericentromeric	100	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	4481877	4482536	AT4TE18870	.	+	ATDNA2T9A	MuDR	DNA	659	short	48	low	1348203	pericentromeric	14730	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4482980	4483945	AT4TE18875	.	+	VANDAL4	MuDR	DNA	965	short	102	medium	1349306	pericentromeric	15833	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	4485259	4485356	AT4TE18880	.	+	ATGP5	Gypsy	LTR	97	tiny	86	medium	1351585	pericentromeric	18112	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4487138	4487435	AT4TE18885	.	+	ATGP5	Gypsy	LTR	297	short	86	medium	1353464	pericentromeric	19991	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4487759	4489421	AT4TE18890	.	-	ATHILA0_I	Gypsy	LTR	1662	short	138	medium	1354085	pericentromeric	20612	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4489421	4489452	AT4TE18895	.	-	ATHILA0_I	Gypsy	LTR	31	tiny	138	medium	1355747	pericentromeric	22274	no-RdDM	no-CHH	.	.	.	.	.
Chr4	4489452	4489996	AT4TE18900	.	+	ATHILA4	Gypsy	LTR	544	short	250	high	1355778	pericentromeric	22305	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4489996	4492706	AT4TE18905	.	+	ATHILA4C	Gypsy	LTR	2710	medium	206	high	1356322	pericentromeric	22849	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	4492706	4492753	AT4TE18910	.	+	ATHILA4C	Gypsy	LTR	47	tiny	206	high	1359032	pericentromeric	25559	RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	4492753	4494613	AT4TE18915	.	+	ATHILA4A	Gypsy	LTR	1860	short	310	high	1359079	pericentromeric	25606	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4494613	4495464	AT4TE18920	.	-	ATHILA6A	Gypsy	LTR	851	short	247	high	1360939	pericentromeric	27466	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	4495782	4496351	AT4TE18925	.	-	ATENSPM2	En-Spm	DNA	569	short	114	medium	1362108	pericentromeric	28635	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4496711	4496753	AT4TE18930	.	+	ATHILA4D_LTR	Gypsy	LTR	43	tiny	106	medium	1363036	pericentromeric	29563	.	.	.	.	.	.	.
Chr4	4496753	4496963	AT4TE18935	.	+	ATHILA4A	Gypsy	LTR	210	short	310	high	1363079	pericentromeric	29606	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	4496964	4497471	AT4TE18940	.	+	VANDAL17	MuDR	DNA	507	short	178	medium	1363290	pericentromeric	29817	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	4498724	4499893	AT4TE18945	.	+	VANDAL3	MuDR	DNA	1169	short	177	medium	1365050	pericentromeric	31577	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4499893	4501785	AT4TE18950	.	+	ATREP11	Helitron	RC	1892	short	841	high	1366219	pericentromeric	32746	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	4499968	4501533	AT4TE18955	.	-	ATREP5	Helitron	RC	1565	short	624	high	1366294	pericentromeric	32821	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	4501785	4501819	AT4TE18960	.	+	ATREP10B	Helitron	RC	34	tiny	491	high	1368111	pericentromeric	34638	no-CHH	no-RdDM	.	.	.	.	.
Chr4	4502773	4502850	AT4TE18965	.	-	TAT1_ATH	Gypsy	LTR	77	tiny	87	medium	1369099	pericentromeric	35626	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	4507885	4507977	AT4TE18990	.	-	ATLANTYS2	Gypsy	LTR	92	tiny	179	medium	1374211	pericentromeric	31660	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	4507977	4511985	AT4TE18995	.	-	ATLANTYS1	Gypsy	LTR	4008	medium	153	medium	1374303	pericentromeric	27652	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	4509552	4509586	AT4TE19000	.	-	ATLANTYS2	Gypsy	LTR	34	tiny	179	medium	1375878	pericentromeric	30051	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	4511985	4512096	AT4TE19010	.	-	ATLANTYS1	Gypsy	LTR	111	short	153	medium	1378311	pericentromeric	27541	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	4512510	4513123	AT4TE19015	.	-	TAT1_ATH	Gypsy	LTR	613	short	87	medium	1378836	pericentromeric	26514	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr4	4514160	4514653	AT4TE19020	.	+	ATLANTYS3	Gypsy	LTR	493	short	142	medium	1380486	pericentromeric	24984	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	4514681	4517207	AT4TE19025	.	+	ATHILA6A	Gypsy	LTR	2526	medium	247	high	1381007	pericentromeric	22430	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr4	4517207	4526924	AT4TE19030	.	-	ATHILA4C	Gypsy	LTR	9717	long	206	high	1383533	pericentromeric	12713	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	4519566	4519199	-	transcript_id-"164be6f3-7cf0-4806-8b25-90baf80b5b60|7"
Chr4	4525268	4526432	AT4TE19035	.	+	ATHILA4D_LTR	Gypsy	LTR	1164	short	106	medium	1391594	pericentromeric	13205	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4526936	4532034	AT4TE19040	.	+	ATHILA6A	Gypsy	LTR	5098	long	247	high	1393262	pericentromeric	7603	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4532034	4532242	AT4TE19045	.	+	ATHILA2	Gypsy	LTR	208	short	413	high	1398360	pericentromeric	7395	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4532242	4534148	AT4TE19050	.	+	ATHILA4C	Gypsy	LTR	1906	short	206	high	1398568	pericentromeric	5489	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4534148	4537295	AT4TE19055	.	+	ATHILA4A	Gypsy	LTR	3147	medium	310	high	1400474	chromoarm	2342	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	4537295	4537405	AT4TE19060	.	+	ATHILA4A	Gypsy	LTR	110	short	310	high	1403621	chromoarm	2232	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	4537636	4538931	AT4TE19065	.	-	ATLANTYS2	Gypsy	LTR	1295	short	179	medium	1403962	chromoarm	706	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr4	4539297	4539509	AT4TE19070	.	-	ATLANTYS2	Gypsy	LTR	212	short	179	medium	1405623	chromoarm	128	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4541086	4546350	AT4TE19075	.	-	ATLANTYS1	Gypsy	LTR	5264	long	153	medium	1407412	chromoarm	404	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	4542527	4542716	AT4TE19080	.	-	ATGP10	Gypsy	LTR	189	short	165	medium	1408853	chromoarm	1845	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4542906	4542938	AT4TE19085	.	-	ATHILA4C	Gypsy	LTR	32	tiny	206	high	1409232	chromoarm	2224	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	4542938	4543912	AT4TE19090	.	-	ATHILA4B_LTR	Gypsy	LTR	974	short	143	medium	1409264	chromoarm	2256	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4543927	4544589	AT4TE19095	.	-	ATGP10	Gypsy	LTR	662	short	165	medium	1410253	chromoarm	3245	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4544589	4545793	AT4TE19100	.	+	ATHILA4A	Gypsy	LTR	1204	short	310	high	1410915	chromoarm	3907	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	4546362	4546589	AT4TE19105	.	+	ATENSPM2	En-Spm	DNA	227	short	114	medium	1412688	chromoarm	5680	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	4547285	4548158	AT4TE19110	.	-	ATDNAI27T9A	MuDR	DNA	873	short	116	medium	1413611	chromoarm	6603	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	4548159	4548669	AT4TE19115	.	+	ATREP4	Helitron	RC	510	short	832	high	1414485	chromoarm	7477	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4548882	4549006	AT4TE19120	.	-	ATMU10	MuDR	DNA	124	short	87	medium	1415208	chromoarm	8200	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4549021	4549307	AT4TE19125	.	+	ATMU10	MuDR	DNA	286	short	87	medium	1415347	chromoarm	8339	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	4549307	4550773	AT4TE19130	.	+	HELITRONY2	Helitron	RC	1466	short	198	medium	1415633	chromoarm	8625	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	4546962	4550067	+	transcript_id-"7b38a53e-11bc-4259-a2c1-a4759618b5cb|5"
Chr4	4551532	4570003	AT4TE19135	.	+	ATENSPM3	En-Spm	DNA	18471	long	98	medium	1417858	chromoarm	10850	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	4557389	4559583	+	transcript_id-"c18aac3e-2335-4cc1-ba99-8af013286d31|9"
Chr4	4554234	4555010	AT4TE19140	.	+	ATHILA6A	Gypsy	LTR	776	short	247	high	1420560	chromoarm	13552	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	4555081	4555123	AT4TE19145	.	+	ATHILA2	Gypsy	LTR	42	tiny	413	high	1421407	chromoarm	14399	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	4555123	4560555	AT4TE19150	.	+	ATHILA2	Gypsy	LTR	5432	long	413	high	1421449	chromoarm	14441	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	4557389	4559583	+	transcript_id-"c18aac3e-2335-4cc1-ba99-8af013286d31|9"
Chr4	4560555	4560575	AT4TE19155	.	+	ATHILA2	Gypsy	LTR	20	tiny	413	high	1426881	chromoarm	19873	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	4560575	4560765	AT4TE19160	.	-	ATENSPM7	En-Spm	DNA	190	short	74	medium	1426901	chromoarm	19893	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	4560765	4560794	AT4TE19165	.	-	ATHILA7	Gypsy	LTR	29	tiny	134	medium	1427091	chromoarm	20083	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	4560794	4565024	AT4TE19170	.	-	ATHILA6B	Gypsy	LTR	4230	medium	134	medium	1427120	chromoarm	20112	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	4565035	4565087	AT4TE19175	.	-	ATHILA0_I	Gypsy	LTR	52	tiny	138	medium	1431361	chromoarm	24353	no-RdDM	no-CHH	.	.	.	.	.
Chr4	4565087	4567161	AT4TE19180	.	-	ATHILA2	Gypsy	LTR	2074	medium	413	high	1431413	chromoarm	24405	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4569058	4569229	AT4TE19190	.	-	ATCOPIA33	Copia	LTR	171	short	6	low	1435384	chromoarm	28376	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4570003	4571415	AT4TE19195	.	+	ATENSPM7	En-Spm	DNA	1412	short	74	medium	1436329	chromoarm	29321	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4571415	4571920	AT4TE19200	.	+	ATENSPM3	En-Spm	DNA	505	short	98	medium	1437741	chromoarm	30733	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4571920	4571943	AT4TE19205	.	+	ATENSPM7	En-Spm	DNA	23	tiny	74	medium	1438246	chromoarm	31238	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	4571943	4572009	AT4TE19210	.	+	ATENSPM3	En-Spm	DNA	66	tiny	98	medium	1438269	chromoarm	31261	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4587668	4588455	AT4TE19290	.	+	ATHILA4A	Gypsy	LTR	787	short	310	high	1453994	chromoarm	16451	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4590025	4590673	AT4TE19295	.	-	BRODYAGA2	MuDR	DNA	648	short	525	high	1456351	chromoarm	14233	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr4	4590973	4592753	AT4TE19300	.	+	ATLINEIII	L1	LINE	1780	short	196	medium	1457299	chromoarm	12153	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	4591778	4591996	AT4TE19305	.	+	ATHATN9	HAT	DNA	218	short	12	low	1458104	chromoarm	12910	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	4592753	4592824	AT4TE19310	.	+	ATLINEIII	L1	LINE	71	tiny	196	medium	1459079	chromoarm	12082	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	4592824	4594825	AT4TE19315	.	+	ATLINE2	L1	LINE	2001	medium	138	medium	1459150	chromoarm	10081	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	4595666	4596373	AT4TE19320	.	+	HELITRON1	Helitron	RC	707	short	130	medium	1461992	chromoarm	8533	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	4596726	4597926	AT4TE19325	.	-	ATHILA4A	Gypsy	LTR	1200	short	310	high	1463052	chromoarm	6980	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4598852	4601149	AT4TE19330	.	+	ATHILA3	Gypsy	LTR	2297	medium	243	high	1465178	chromoarm	3757	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	4601149	4601199	AT4TE19335	.	+	ATHILA3	Gypsy	LTR	50	tiny	243	high	1467475	chromoarm	3707	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	4601199	4603767	AT4TE19340	.	+	ATHILA3	Gypsy	LTR	2568	medium	243	high	1467525	chromoarm	1139	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	4602521	4602841	+	transcript_id-"02d0c86f-2141-48a0-8b6d-0f3b34243410|4"
Chr4	4603767	4603793	AT4TE19345	.	+	ATHILA0_I	Gypsy	LTR	26	tiny	138	medium	1470093	chromoarm	1113	no-CHH	no-RdDM	LowExpressed	.	.	.	.
Chr4	4603793	4603851	AT4TE19350	.	+	ATHILA3	Gypsy	LTR	58	tiny	243	high	1470119	chromoarm	1055	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	4606011	4606545	AT4TE19360	.	+	ATREP5	Helitron	RC	534	short	624	high	1472337	chromoarm	997	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	4606561	4606968	AT4TE19365	.	+	HELITRON2	Helitron	RC	407	short	194	medium	1472887	chromoarm	1547	no-RdDM	no-CHH	.	.	.	.	.
Chr4	4606968	4609190	AT4TE19370	.	+	HELITRON1	Helitron	RC	2222	medium	130	medium	1473294	chromoarm	1954	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4609190	4609216	AT4TE19375	.	+	HELITRON1	Helitron	RC	26	tiny	130	medium	1475516	chromoarm	4176	no-RdDM	no-CHH	.	.	.	.	.
Chr4	4609216	4610745	AT4TE19380	.	-	ATHILA0_I	Gypsy	LTR	1529	short	138	medium	1475542	chromoarm	4202	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	4610745	4610770	AT4TE19385	.	-	ATHILA0_I	Gypsy	LTR	25	tiny	138	medium	1477071	chromoarm	5731	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4611048	4611187	AT4TE19390	.	+	HELITRON4	Helitron	RC	139	short	199	medium	1477374	chromoarm	6034	no-RdDM	no-CHH	.	.	.	.	.
Chr4	4611187	4613040	AT4TE19395	.	+	HELITRON4	Helitron	RC	1853	short	199	medium	1477513	chromoarm	6173	no-RdDM	no-CHH	.	.	.	.	.
Chr4	4613296	4613475	AT4TE19400	.	+	HELITRON1	Helitron	RC	179	short	130	medium	1479622	chromoarm	8282	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4614803	4620080	AT4TE19405	.	+	HELITRON1	Helitron	RC	5277	long	130	medium	1481129	chromoarm	9789	no-RdDM	no-RdDM	ExpressedAndAnnotated	4618068,4618069,4618069	4619456,4618751,4619319	+,+,+	transcript_id-"e946bd1f-ab5f-47e9-ade9-6794092d4e70|11",transcript_id-"c0fa00b1-c0dc-4a85-8921-c26432ef84e1|4",transcript_id-"7413b916-4ad5-4706-b9f1-8190c3877bd0|6"
Chr4	4617400	4617473	AT4TE19410	.	+	HELITRON2	Helitron	RC	73	tiny	194	medium	1483726	chromoarm	12386	no-RdDM	no-CHH	.	.	.	.	.
Chr4	4617516	4617792	AT4TE19415	.	+	ATENSPM3	En-Spm	DNA	276	short	98	medium	1483842	chromoarm	12502	no-RdDM	no-CHH	.	.	.	.	.
Chr4	4618724	4618782	AT4TE19420	.	+	ATENSPM7	En-Spm	DNA	58	tiny	74	medium	1485050	chromoarm	13710	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	4621103	4621188	AT4TE19430	.	+	ATREP5	Helitron	RC	85	tiny	624	high	1487429	chromoarm	15675	no-RdDM	no-CHH	ExpressedAndAnnotated	4621244,4621175	4620265,4620452	-,-	transcript_id-"b764a5ee-27ef-460c-b703-585ee26a35ac|5",transcript_id-"d9fedb9c-fd94-4d25-a7d7-0d142bd5dd8f|7"
Chr4	4621188	4621555	AT4TE19435	.	-	ATREP15	Helitron	RC	367	short	1003	high	1487514	chromoarm	15308	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	4621555	4622388	AT4TE19440	.	+	ATREP1	Helitron	RC	833	short	498	high	1487881	chromoarm	14475	no-CHH	no-CHH	.	.	.	.	.
Chr4	4622391	4623182	AT4TE19445	.	-	HELITRONY3	Helitron	RC	791	short	1399	high	1488717	chromoarm	13681	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	4623490	4628221	AT4TE19450	.	-	ATCOPIA54	Copia	LTR	4731	medium	18	low	1489816	chromoarm	8642	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	4628222	4628264	AT4TE19455	.	+	ATCOPIA65	Copia	LTR	42	tiny	34	low	1494548	chromoarm	8599	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	4628272	4628453	AT4TE19460	.	-	HELITRONY1E	Helitron	RC	181	short	447	high	1494598	chromoarm	8410	no-CHH	no-RdDM	.	.	.	.	.
Chr4	4628587	4628761	AT4TE19465	.	+	TAG3N1	HAT	DNA	174	short	97	medium	1494913	chromoarm	8102	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	4628761	4633895	AT4TE19470	.	+	ATCOPIA53	Copia	LTR	5134	long	5	low	1495087	chromoarm	2968	no-RdDM	no-RdDM	ExpressedAndAnnotated	4628865	4629393	+	transcript_id-"01aca943-a1b2-4bc1-85ec-4336bc3b42c4|4"
Chr4	4633895	4634387	AT4TE19475	.	+	TAG3N1	HAT	DNA	492	short	97	medium	1500221	chromoarm	2476	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	4634387	4634684	AT4TE19480	.	+	ATREP10B	Helitron	RC	297	short	491	high	1500713	chromoarm	2179	no-RdDM	no-CHH	.	.	.	.	.
Chr4	4635360	4636327	AT4TE19485	.	+	ATENSPM1	En-Spm	DNA	967	short	30	low	1501686	chromoarm	536	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4636327	4636357	AT4TE19490	.	+	ATENSPM1A	En-Spm	DNA	30	tiny	77	medium	1502653	chromoarm	506	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	4637760	4637960	AT4TE19495	.	+	VANDAL14	MuDR	DNA	200	short	25	low	1504086	chromoarm	414	no-RdDM	no-CHH	.	.	.	.	.
Chr4	4638724	4638933	AT4TE19500	.	+	VANDAL13	MuDR	DNA	209	short	38	low	1505050	chromoarm	1378	no-RdDM	no-CHH	.	.	.	.	.
Chr4	4639275	4639607	AT4TE19505	.	+	VANDAL13	MuDR	DNA	332	short	38	low	1505601	chromoarm	1929	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4642707	4643048	AT4TE19515	.	-	ARNOLDY2	MuDR	DNA	341	short	288	high	1509033	chromoarm	794	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr4	4643048	4643704	AT4TE19520	.	+	ARNOLDY1	MuDR	DNA	656	short	237	high	1509374	chromoarm	138	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4643704	4643857	AT4TE19525	.	-	TAG3N1	HAT	DNA	153	short	97	medium	1510030	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	4645309	4648816	AT4TE19530	.	-	ATGP1	Gypsy	LTR	3507	medium	144	medium	1511635	chromoarm	723	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	4648843	4649381	AT4TE19535	.	-	TAG3N1	HAT	DNA	538	short	97	medium	1515169	chromoarm	4257	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4649392	4649581	AT4TE19540	.	+	ATHILA4A	Gypsy	LTR	189	short	310	high	1515718	chromoarm	4806	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	4649581	4650820	AT4TE19545	.	-	ATREP10D	Helitron	RC	1239	short	1295	high	1515907	chromoarm	4995	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4650820	4657218	AT4TE19550	.	+	ATREP3	Helitron	RC	6398	long	1439	high	1517146	chromoarm	6234	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4652542	4652564	AT4TE19555	.	-	ATCOPIA49	Copia	LTR	22	tiny	34	low	1518868	chromoarm	7956	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4652564	4654061	AT4TE19560	.	-	ATCOPIA49	Copia	LTR	1497	short	34	low	1518890	chromoarm	7978	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4654061	4655128	AT4TE19565	.	-	ATCOPIA95	Copia	LTR	1067	short	72	medium	1520387	chromoarm	9475	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4656084	4656109	AT4TE19570	.	+	ATREP9	Helitron	RC	25	tiny	201	high	1522410	chromoarm	11498	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4656109	4656179	AT4TE19575	.	-	ATREP1	Helitron	RC	70	tiny	498	high	1522435	chromoarm	11523	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4657218	4657242	AT4TE19580	.	+	HELITRONY3	Helitron	RC	24	tiny	1399	high	1523544	chromoarm	12632	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	4657345	4658822	AT4TE19585	.	-	ATDNAI27T9B	MuDR	DNA	1477	short	43	low	1523671	chromoarm	12759	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	4659135	4659239	AT4TE19590	.	-	ATDNAI27T9A	MuDR	DNA	104	short	116	medium	1525461	chromoarm	14549	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4659289	4659460	AT4TE19595	.	-	VANDAL5A	MuDR	DNA	171	short	56	medium	1525615	chromoarm	14703	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	4661545	4661575	AT4TE19605	.	-	HELITRONY1D	Helitron	RC	30	tiny	756	high	1527871	chromoarm	16959	no-CHH	DCL3-RdDM	.	.	.	.	.
Chr4	4661575	4663916	AT4TE19610	.	-	HELITRONY1D	Helitron	RC	2341	medium	756	high	1527901	chromoarm	16989	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	4663917	4663991	AT4TE19615	.	+	HELITRONY1D	Helitron	RC	75	tiny	756	high	1530242	chromoarm	19330	.	.	.	.	.	.	.
Chr4	4663991	4664015	AT4TE19620	.	-	ATREP5	Helitron	RC	24	tiny	624	high	1530317	chromoarm	19405	no-CHH	no-CHH	.	.	.	.	.
Chr4	4664039	4667497	AT4TE19625	.	-	ATHAT1	HAT	DNA	3458	medium	105	medium	1530365	chromoarm	19453	no-RdDM	no-CHH	.	.	.	.	.
Chr4	4664189	4664822	AT4TE19630	.	+	ATHATN2	HAT	DNA	633	short	46	low	1530515	chromoarm	19603	no-CHH	no-CHH	.	.	.	.	.
Chr4	4664824	4664953	AT4TE19635	.	-	ATIS112A	Harbinger	DNA	129	short	173	medium	1531150	chromoarm	20238	no-CHH	no-CHH	.	.	.	.	.
Chr4	4668643	4670288	AT4TE19645	.	-	ATHILA8A	Gypsy	LTR	1645	short	97	medium	1534969	chromoarm	21796	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4670288	4670476	AT4TE19650	.	+	ATGP7	Gypsy	LTR	188	short	47	low	1536614	chromoarm	21608	no-RdDM	no-CHH	.	.	.	.	.
Chr4	4670476	4676290	AT4TE19655	.	+	ATGP7	Gypsy	LTR	5814	long	47	low	1536802	chromoarm	15794	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	4670989	4676018	+	transcript_id-"c3b7a338-110e-467f-83b8-292f542e6b1b|3"
Chr4	4675373	4675420	AT4TE19660	.	+	ATGP7	Gypsy	LTR	47	tiny	47	low	1541699	chromoarm	16664	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	4676290	4676311	AT4TE19665	.	+	ATGP7	Gypsy	LTR	21	tiny	47	low	1542616	chromoarm	15773	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr4	4676311	4677031	AT4TE19670	.	-	ATHILA8A	Gypsy	LTR	720	short	97	medium	1542637	chromoarm	15053	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	4677141	4684195	AT4TE19675	.	-	ATGP1	Gypsy	LTR	7054	long	144	medium	1543467	chromoarm	7889	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	4684195	4684600	AT4TE19680	.	-	TAG3N1	HAT	DNA	405	short	97	medium	1550521	chromoarm	7484	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	4684604	4685215	AT4TE19685	.	+	ATHILA4A	Gypsy	LTR	611	short	310	high	1550930	chromoarm	6869	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4685215	4686766	AT4TE19690	.	+	ATREP11A	Helitron	RC	1551	short	95	medium	1551541	chromoarm	5318	no-RdDM	no-CHH	.	.	.	.	.
Chr4	4686766	4686795	AT4TE19695	.	+	HELITRONY1C	Helitron	RC	29	tiny	120	medium	1553092	chromoarm	5289	no-CHH	no-CHH	.	.	.	.	.
Chr4	4686795	4686993	AT4TE19700	.	+	ATREP5	Helitron	RC	198	short	624	high	1553121	chromoarm	5091	no-RdDM	no-CHH	.	.	.	.	.
Chr4	4687271	4687649	AT4TE19705	.	-	BRODYAGA2	MuDR	DNA	378	short	525	high	1553597	chromoarm	4435	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	4688081	4688791	AT4TE19710	.	-	Unassigned	.	Unassigned	710	short	.	low	1554407	chromoarm	3293	no-RdDM	no-CHH	.	.	.	.	.
Chr4	4688970	4690751	AT4TE19715	.	+	META1	Copia	LTR	1781	short	138	medium	1555296	chromoarm	1333	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4693737	4693778	AT4TE19725	.	-	ATREP10D	Helitron	RC	41	tiny	1295	high	1560063	chromoarm	1416	no-RdDM	no-CHH	.	.	.	.	.
Chr4	4693778	4696181	AT4TE19730	.	-	HELITRONY1D	Helitron	RC	2403	medium	756	high	1560104	chromoarm	1457	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4696182	4696296	AT4TE19735	.	+	HELITRONY3	Helitron	RC	114	short	1399	high	1562508	chromoarm	3861	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	4696301	4699594	AT4TE19740	.	-	ATHAT1	HAT	DNA	3293	medium	105	medium	1562627	chromoarm	3980	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	4696720	4697044	AT4TE19745	.	-	ATIS112A	Harbinger	DNA	324	short	173	medium	1563046	chromoarm	4399	no-CHH	no-CHH	.	.	.	.	.
Chr4	4700756	4714935	AT4TE19755	.	-	ATHILA8A	Gypsy	LTR	14179	long	97	medium	1567082	chromoarm	8435	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	4701734	4701947	AT4TE19760	.	-	ATHILA8A	Gypsy	LTR	213	short	97	medium	1568060	chromoarm	9413	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	4705786	4711137	AT4TE19780	.	+	ATHILA2	Gypsy	LTR	5351	long	413	high	1572112	chromoarm	13465	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	4714935	4714992	AT4TE19800	.	-	ATHILA8A	Gypsy	LTR	57	tiny	97	medium	1581261	chromoarm	17205	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	4715656	4715752	AT4TE19805	.	+	HELITRONY1B	Helitron	RC	96	tiny	414	high	1581982	chromoarm	16445	no-RdDM	no-CHH	.	.	.	.	.
Chr4	4715792	4719816	AT4TE19810	.	-	ATLINE1_6	L1	LINE	4024	medium	129	medium	1582118	chromoarm	12381	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	4717035	4718197	AT4TE19815	.	+	ATGP1	Gypsy	LTR	1162	short	144	medium	1583361	chromoarm	14000	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4720845	4721577	AT4TE19825	.	+	ATGP1	Gypsy	LTR	732	short	144	medium	1587171	chromoarm	10620	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	4722730	4729735	AT4TE19830	.	-	ATLANTYS1	Gypsy	LTR	7005	long	153	medium	1589056	chromoarm	2462	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	4723724	4726666	+	transcript_id-"f6904ed0-f2b1-4ec2-803e-2240a754c00c|3"
Chr4	4730444	4732941	AT4TE19835	.	-	ATDNA12T3A	.	DNA	2497	medium	22	low	1596770	chromoarm	0	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	4734177	4735519	AT4TE19840	.	-	ATLANTYS2	Gypsy	LTR	1342	short	179	medium	1600503	chromoarm	753	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	4735923	4738309	AT4TE19845	.	-	ATHILA4A	Gypsy	LTR	2386	medium	310	high	1602249	chromoarm	2499	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	4738309	4742481	AT4TE19850	.	-	ATHILA4	Gypsy	LTR	4172	medium	250	high	1604635	chromoarm	4885	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	4742494	4742557	AT4TE19855	.	-	ATHILA4B_LTR	Gypsy	LTR	63	tiny	143	medium	1608820	chromoarm	9070	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4742564	4744993	AT4TE19860	.	-	ATLANTYS1	Gypsy	LTR	2429	medium	153	medium	1608890	chromoarm	9140	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4744993	4745193	AT4TE19865	.	-	ATLANTYS2	Gypsy	LTR	200	short	179	medium	1611319	chromoarm	11569	no-RdDM	no-CHH	.	.	.	.	.
Chr4	4745504	4746138	AT4TE19870	.	-	TAT1_ATH	Gypsy	LTR	634	short	87	medium	1611830	chromoarm	12080	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4747057	4749846	AT4TE19875	.	-	ATHILA3	Gypsy	LTR	2789	medium	243	high	1613383	chromoarm	13633	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	4749865	4749938	AT4TE19880	.	+	ATENSPM4	En-Spm	DNA	73	tiny	50	medium	1616191	chromoarm	16441	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	4749938	4751338	AT4TE19885	.	+	ATENSPM2	En-Spm	DNA	1400	short	114	medium	1616264	chromoarm	16514	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	4750431	4750999	AT4TE19890	.	+	ATCOPIA43	Copia	LTR	568	short	29	low	1616757	chromoarm	17007	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	4751565	4751595	AT4TE19895	.	-	VANDAL2	MuDR	DNA	30	tiny	43	low	1617891	chromoarm	18141	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4751595	4757325	AT4TE19900	.	-	VANDAL2	MuDR	DNA	5730	long	43	low	1617921	chromoarm	18171	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	4757325	4761469	AT4TE19905	.	+	ATHILA2	Gypsy	LTR	4144	medium	413	high	1623651	chromoarm	23901	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	4757227	4757946	+	transcript_id-"9b2f9f93-b02c-4f25-9d63-e454a68ca568|134"
Chr4	4761469	4768681	AT4TE19910	.	+	ATHILA0_I	Gypsy	LTR	7212	long	138	medium	1627795	chromoarm	23991	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr4	4768681	4782141	AT4TE19915	.	+	ATHILA2	Gypsy	LTR	13460	long	413	high	1635007	chromoarm	10531	no-RdDM	no-RdDM	ExpressedAndAnnotated	4777208,4777591,4777720	4786194,4778010,4781162	+,+,+	transcript_id-"48654317-1f1f-4a45-ba21-209af7d5649f|17",transcript_id-"4034ed28-e74f-478e-a934-a4034ab8b239|3",transcript_id-"355d2137-7b96-42d8-adb7-4fba305bf291|5"
Chr4	4776684	4777190	AT4TE19920	.	+	ATHILA2	Gypsy	LTR	506	short	413	high	1643010	chromoarm	15482	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	4777190	4778739	AT4TE19925	.	+	ATHILA5	Gypsy	LTR	1549	short	131	medium	1643516	chromoarm	13933	no-RdDM	no-RdDM	ExpressedAndAnnotated	4777208,4777591,4777720	4786194,4778010,4781162	+,+,+	transcript_id-"48654317-1f1f-4a45-ba21-209af7d5649f|17",transcript_id-"4034ed28-e74f-478e-a934-a4034ab8b239|3",transcript_id-"355d2137-7b96-42d8-adb7-4fba305bf291|5"
Chr4	4782141	4785968	AT4TE19935	.	-	VANDAL2	MuDR	DNA	3827	medium	43	low	1648467	chromoarm	6704	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	4785974	4786049	AT4TE19940	.	-	VANDAL2N1	MuDR	DNA	75	tiny	51	medium	1652300	chromoarm	6623	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	4786468	4786603	AT4TE19945	.	-	ATREP15	Helitron	RC	135	short	1003	high	1652794	chromoarm	6069	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	4788476	4790109	AT4TE19955	.	+	ATLINE1A	L1	LINE	1633	short	289	high	1654802	chromoarm	2563	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	4787733	4788736	+	transcript_id-"7857b547-7a92-4edb-a545-7745b562aec5|17"
Chr4	4790351	4790451	AT4TE19960	.	+	BRODYAGA2	MuDR	DNA	100	short	525	high	1656677	chromoarm	2221	no-RdDM	no-CHH	.	.	.	.	.
Chr4	4790451	4790901	AT4TE19965	.	-	HELITRONY1B	Helitron	RC	450	short	414	high	1656777	chromoarm	1771	no-CHH	no-CHH	.	.	.	.	.
Chr4	4792077	4792849	AT4TE19970	.	+	HARBINGER	Harbinger	DNA	772	short	90	medium	1658403	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	4792849	4793038	AT4TE19975	.	+	ATGP8	Gypsy	LTR	189	short	92	medium	1659175	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	4794388	4794962	AT4TE19980	.	+	ATDNA2T9A	MuDR	DNA	574	short	48	low	1660714	chromoarm	279	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4800888	4800952	AT4TE20010	.	-	ATREP10D	Helitron	RC	64	tiny	1295	high	1667214	chromoarm	1378	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	4800962	4801125	AT4TE20015	.	-	ATREP10C	Helitron	RC	163	short	123	medium	1667288	chromoarm	1452	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	4801125	4801844	AT4TE20020	.	-	ATREP10C	Helitron	RC	719	short	123	medium	1667451	chromoarm	783	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4801848	4802152	AT4TE20025	.	-	ATREP10	Helitron	RC	304	short	63	medium	1668174	chromoarm	475	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	4803312	4803388	AT4TE20030	.	+	ATLINE1_3A	L1	LINE	76	tiny	160	medium	1669638	chromoarm	0	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr4	4805756	4805930	AT4TE20040	.	-	ATREP10D	Helitron	RC	174	short	1295	high	1672082	chromoarm	642	no-CHH	no-CHH	.	.	.	.	.
Chr4	4805930	4806030	AT4TE20045	.	+	ATREP15	Helitron	RC	100	short	1003	high	1672256	chromoarm	816	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	4806030	4807322	AT4TE20050	.	+	ATREP11	Helitron	RC	1292	short	841	high	1672356	chromoarm	916	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	4807322	4807704	AT4TE20055	.	-	HELITRONY1A	Helitron	RC	382	short	271	high	1673648	chromoarm	930	no-CHH	no-CHH	.	.	.	.	.
Chr4	4807704	4807763	AT4TE20060	.	-	ATREP4	Helitron	RC	59	tiny	832	high	1674030	chromoarm	871	no-CHH	no-CHH	.	.	.	.	.
Chr4	4809527	4809552	AT4TE20065	.	-	ARNOLDY1	MuDR	DNA	25	tiny	237	high	1675853	chromoarm	175	DCL3-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	4809553	4809778	AT4TE20070	.	-	HELITRONY3	Helitron	RC	226	short	1399	high	1675878	chromoarm	200	.	.	LowExpressed	.	.	.	.
Chr4	4809778	4821017	AT4TE20075	.	-	ARNOLD3	MuDR	DNA	11239	long	45	low	1676104	chromoarm	426	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	4809949,4822165,4822165	4815232,4819013,4819422	+,-,-	transcript_id-"f03b398d-0599-4ef0-924e-df07c675c510|3",transcript_id-"aea6afd3-8af9-4e9d-b3ca-028ec33e5e74|15",transcript_id-"7d05d643-3c30-47f8-aa03-ac5fe58d8b8b|45"
Chr4	4821022	4821052	AT4TE20080	.	-	ARNOLD3	MuDR	DNA	31	tiny	45	low	1687347	chromoarm	4597	.	.	.	.	.	.	.
Chr4	4821052	4822319	AT4TE20085	.	-	ARNOLD2	MuDR	DNA	1267	short	68	medium	1687378	chromoarm	3330	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	4822165,4822165	4819013,4819422	-,-	transcript_id-"aea6afd3-8af9-4e9d-b3ca-028ec33e5e74|15",transcript_id-"7d05d643-3c30-47f8-aa03-ac5fe58d8b8b|45"
Chr4	4822319	4822416	AT4TE20090	.	-	ARNOLD1	MuDR	DNA	97	tiny	39	low	1688645	chromoarm	3233	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4822546	4824153	AT4TE20095	.	+	ATHILA8A	Gypsy	LTR	1607	short	97	medium	1688872	chromoarm	1496	no-RdDM	no-CHH	.	.	.	.	.
Chr4	4830279	4836765	AT4TE20120	.	+	ATENSPM5	En-Spm	DNA	6486	long	111	medium	1696605	chromoarm	1342	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	4835296	4838221	+	transcript_id-"c1ac3035-0e70-4083-9937-ef1308ae9719|18"
Chr4	4836765	4838847	AT4TE20125	.	+	ATENSPM6	En-Spm	DNA	2082	medium	151	medium	1703091	chromoarm	7828	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	4835296	4838221	+	transcript_id-"c1ac3035-0e70-4083-9937-ef1308ae9719|18"
Chr4	4838847	4840515	AT4TE20130	.	+	ATENSPM2	En-Spm	DNA	1668	short	114	medium	1705173	chromoarm	6363	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4844738	4845073	AT4TE20150	.	+	ATREP19	.	DNA	335	short	189	medium	1711064	chromoarm	1805	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	4845365	4845478	AT4TE20155	.	-	HELITRONY3	Helitron	RC	113	short	1399	high	1711691	chromoarm	1400	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	4845483	4846828	AT4TE20160	.	-	ATREP10D	Helitron	RC	1345	short	1295	high	1711809	chromoarm	50	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	4846828	4846890	AT4TE20165	.	-	HELITRONY3	Helitron	RC	62	tiny	1399	high	1713154	chromoarm	0	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr4	4847155	4847218	AT4TE20170	.	-	HELITRONY2	Helitron	RC	63	tiny	198	medium	1713481	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	4847218	4848184	AT4TE20175	.	-	ATREP5	Helitron	RC	966	short	624	high	1713544	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4848198	4848400	AT4TE20180	.	+	ATDNA12T3_2	.	DNA	202	short	660	high	1714524	chromoarm	972	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4850224	4851354	AT4TE20185	.	-	ARNOLDY1	MuDR	DNA	1130	short	237	high	1716550	chromoarm	189	no-CHH	no-CHH	.	.	.	.	.
Chr4	4851354	4851562	AT4TE20190	.	+	ATREP15	Helitron	RC	208	short	1003	high	1717680	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	4852102	4852566	AT4TE20195	.	-	ATHILA4	Gypsy	LTR	464	short	250	high	1718428	chromoarm	224	no-CHH	no-CHH	.	.	.	.	.
Chr4	4852572	4852740	AT4TE20200	.	-	ATHILA8A	Gypsy	LTR	168	short	97	medium	1718898	chromoarm	694	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4852740	4857277	AT4TE20205	.	+	ATHILA4	Gypsy	LTR	4537	medium	250	high	1719066	chromoarm	862	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	4857277	4859693	AT4TE20210	.	+	ATHILA4A	Gypsy	LTR	2416	medium	310	high	1723603	chromoarm	5399	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4859693	4859936	AT4TE20215	.	-	ATHILA8A	Gypsy	LTR	243	short	97	medium	1726019	chromoarm	7815	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4860086	4860627	AT4TE20220	.	-	ATHILA8A	Gypsy	LTR	541	short	97	medium	1726412	chromoarm	8208	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4861594	4862451	AT4TE20225	.	+	ATHILA8B	Gypsy	LTR	857	short	78	medium	1727920	chromoarm	9716	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4862787	4863084	AT4TE20230	.	+	ATHILA8A	Gypsy	LTR	297	short	97	medium	1729113	chromoarm	10909	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4864026	4864048	AT4TE20235	.	+	ATHILA8B	Gypsy	LTR	22	tiny	78	medium	1730352	chromoarm	12148	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4864048	4864081	AT4TE20240	.	+	ATHILA8A	Gypsy	LTR	33	tiny	97	medium	1730374	chromoarm	12170	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	4864081	4865631	AT4TE20245	.	+	ATHILA8B	Gypsy	LTR	1550	short	78	medium	1730407	chromoarm	12203	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	4864187,4864191,4864191	4864562,4864432,4865852	+,+,+	transcript_id-"5fea2830-bc78-488f-bb72-69bb539ba898|16",transcript_id-"cbf29c0d-88d7-4857-81ee-b61d2d5664fd|329",transcript_id-"f95fe382-01c8-425d-92f1-27e6479e225b|21"
Chr4	4866356	4866678	AT4TE20250	.	+	ATENSPM11	En-Spm	DNA	323	short	47	low	1732681	chromoarm	14477	.	.	LowExpressed	.	.	.	.
Chr4	4868281	4868673	AT4TE20255	.	+	ATENSPM11	En-Spm	DNA	392	short	47	low	1734607	chromoarm	16174	RDR6-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	4868673	4868788	AT4TE20260	.	+	ATENSPM10	En-Spm	DNA	115	short	81	medium	1734999	chromoarm	16059	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	4868845	4868964	AT4TE20265	.	+	ATGP10	Gypsy	LTR	119	short	165	medium	1735171	chromoarm	15883	RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr4	4868964	4870037	AT4TE20270	.	+	ATHILA4B_LTR	Gypsy	LTR	1073	short	143	medium	1735290	chromoarm	14810	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4870635	4871188	AT4TE20275	.	-	ATHATN2	HAT	DNA	553	short	46	low	1736961	chromoarm	13659	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr4	4872784	4873358	AT4TE20280	.	+	ATHILA8B	Gypsy	LTR	574	short	78	medium	1739110	chromoarm	11489	no-CHH	no-CHH	.	.	.	.	.
Chr4	4874611	4874871	AT4TE20285	.	-	ATREP15	Helitron	RC	260	short	1003	high	1740937	chromoarm	9976	no-CHH	no-CHH	.	.	.	.	.
Chr4	4874871	4875166	AT4TE20290	.	+	HELITRONY3	Helitron	RC	295	short	1399	high	1741197	chromoarm	9681	no-CHH	no-CHH	.	.	.	.	.
Chr4	4875166	4876758	AT4TE20295	.	-	ATREP10D	Helitron	RC	1592	short	1295	high	1741492	chromoarm	8089	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	4876758	4879720	AT4TE20300	.	-	ATLINE1A	L1	LINE	2962	medium	289	high	1743084	chromoarm	5127	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4879720	4879971	AT4TE20305	.	+	ATLINE1_4	L1	LINE	251	short	102	medium	1746046	chromoarm	4876	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4879971	4880062	AT4TE20310	.	+	ATLINE1A	L1	LINE	91	tiny	289	high	1746297	chromoarm	4785	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	4880062	4880876	AT4TE20315	.	-	ATLINE1A	L1	LINE	814	short	289	high	1746388	chromoarm	3971	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	4880905	4881264	AT4TE20320	.	-	ATREP11	Helitron	RC	359	short	841	high	1747231	chromoarm	3583	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	4881733	4882025	AT4TE20325	.	-	ATREP3	Helitron	RC	292	short	1439	high	1748059	chromoarm	2822	no-CHH	no-CHH	.	.	.	.	.
Chr4	4882036	4882585	AT4TE20330	.	+	ATHPOGON1	Pogo	DNA	549	short	174	medium	1748362	chromoarm	2262	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4882585	4882851	AT4TE20335	.	-	HELITRONY1B	Helitron	RC	266	short	414	high	1748911	chromoarm	1996	no-CHH	no-CHH	.	.	.	.	.
Chr4	4882851	4883113	AT4TE20340	.	+	DT1	Mariner	DNA	262	short	123	medium	1749177	chromoarm	1734	no-CHH	no-CHH	.	.	.	.	.
Chr4	4883113	4883226	AT4TE20345	.	-	ATDNA2T9B	MuDR	DNA	113	short	26	low	1749439	chromoarm	1621	no-CHH	no-CHH	.	.	.	.	.
Chr4	4889421	4889633	AT4TE20370	.	+	ATMU10	MuDR	DNA	212	short	87	medium	1755747	chromoarm	482	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	4889646	4889979	AT4TE20375	.	+	ATMU10	MuDR	DNA	333	short	87	medium	1755972	chromoarm	707	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	4891842	4892018	AT4TE20385	.	+	ATGP10	Gypsy	LTR	176	short	165	medium	1758168	chromoarm	2903	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	4891787	4892049	+	transcript_id-"1c89e539-d2f5-4c8b-af97-2b54efa90950|3"
Chr4	4892198	4892298	AT4TE20390	.	-	ATHILA6B	Gypsy	LTR	100	short	134	medium	1758524	chromoarm	3259	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	4892298	4892324	AT4TE20395	.	-	ATHILA2	Gypsy	LTR	26	tiny	413	high	1758624	chromoarm	3359	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	4892324	4903536	AT4TE20400	.	-	ATHILA2	Gypsy	LTR	11212	long	413	high	1758650	chromoarm	3385	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	4893460,4895404	4893316,4893317	-,-	transcript_id-"c48a3886-4afa-4093-a331-6a1840310b85|3",transcript_id-"9346d979-6a55-4185-81d6-f337290ae326|7"
Chr4	4903537	4903586	AT4TE20405	.	-	ATHILA	Gypsy	LTR	49	tiny	198	medium	1769863	chromoarm	14598	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	4903930	4904004	AT4TE20410	.	+	ATREP4	Helitron	RC	74	tiny	832	high	1770256	chromoarm	14991	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	4904004	4904292	AT4TE20415	.	+	ATREP10D	Helitron	RC	288	short	1295	high	1770330	chromoarm	15065	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4904292	4904712	AT4TE20420	.	+	HELITRONY1D	Helitron	RC	420	short	756	high	1770618	chromoarm	15353	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	4904712	4906162	AT4TE20425	.	+	HELITRONY3	Helitron	RC	1450	short	1399	high	1771038	chromoarm	15773	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4906162	4906367	AT4TE20430	.	+	HELITRONY1D	Helitron	RC	205	short	756	high	1772488	chromoarm	17223	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr4	4906367	4907256	AT4TE20435	.	+	HELITRONY1D	Helitron	RC	889	short	756	high	1772693	chromoarm	17428	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	4907256	4907471	AT4TE20440	.	+	ATREP15	Helitron	RC	215	short	1003	high	1773582	chromoarm	18317	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	4909064	4909203	AT4TE20445	.	+	ATREP3	Helitron	RC	139	short	1439	high	1775390	chromoarm	20125	PolIV-and-RDR6-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr4	4909203	4910119	AT4TE20450	.	+	HELITRONY1D	Helitron	RC	916	short	756	high	1775529	chromoarm	20264	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4910120	4910276	AT4TE20455	.	+	HELITRONY1D	Helitron	RC	157	short	756	high	1776445	chromoarm	21180	.	.	.	.	.	.	.
Chr4	4910276	4910373	AT4TE20460	.	+	ATREP15	Helitron	RC	97	tiny	1003	high	1776602	chromoarm	21337	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4912202	4912241	AT4TE20465	.	-	ATENSPM2	En-Spm	DNA	39	tiny	114	medium	1778528	chromoarm	23263	no-RdDM	no-CHH	.	.	.	.	.
Chr4	4912241	4912845	AT4TE20470	.	-	ATENSPM6	En-Spm	DNA	604	short	151	medium	1778567	chromoarm	23302	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4912947	4912989	AT4TE20475	.	-	ATENSPM2	En-Spm	DNA	42	tiny	114	medium	1779273	chromoarm	24008	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr4	4912989	4913733	AT4TE20480	.	-	ATENSPM9	En-Spm	DNA	744	short	97	medium	1779315	chromoarm	24050	no-RdDM	no-CHH	.	.	.	.	.
Chr4	4913009	4913721	AT4TE20485	.	-	ATENSPM9	En-Spm	DNA	712	short	97	medium	1779335	chromoarm	24070	no-RdDM	no-CHH	.	.	.	.	.
Chr4	4913758	4915128	AT4TE20490	.	-	ATENSPM2	En-Spm	DNA	1370	short	114	medium	1780084	chromoarm	24819	no-RdDM	no-CHH	.	.	.	.	.
Chr4	4915128	4915158	AT4TE20495	.	-	ATENSPM5	En-Spm	DNA	30	tiny	111	medium	1781454	chromoarm	26189	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	4915274	4916070	AT4TE20500	.	+	ATREP3	Helitron	RC	796	short	1439	high	1781600	chromoarm	26335	no-RdDM	no-CHH	.	.	.	.	.
Chr4	4916258	4916334	AT4TE20505	.	-	ATCOPIA28	Copia	LTR	76	tiny	81	medium	1782584	chromoarm	27319	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	4916334	4919901	AT4TE20510	.	-	ROMANIAT5	Copia	LTR	3567	medium	49	low	1782660	chromoarm	27395	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4919905	4922255	AT4TE20515	.	-	ATCOPIA28	Copia	LTR	2350	medium	81	medium	1786231	chromoarm	27307	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4920158	4921301	AT4TE20520	.	-	ATGP1	Gypsy	LTR	1143	short	144	medium	1786484	chromoarm	28261	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4923756	4923973	AT4TE20530	.	+	ATDNA12T3_2	.	DNA	217	short	660	high	1790082	chromoarm	25589	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	4924242	4931834	AT4TE20535	.	-	ATENSPM7	En-Spm	DNA	7592	long	74	medium	1790568	chromoarm	17728	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	4924790	4925289	AT4TE20540	.	-	ATENSPM3	En-Spm	DNA	499	short	98	medium	1791116	chromoarm	24273	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	4925354	4926635	AT4TE20545	.	-	ATENSPM3	En-Spm	DNA	1281	short	98	medium	1791680	chromoarm	22927	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	4931834	4933251	AT4TE20570	.	-	ATENSPM3	En-Spm	DNA	1417	short	98	medium	1798160	chromoarm	16311	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	4933251	4933414	AT4TE20575	.	+	ATDNA12T3_2	.	DNA	163	short	660	high	1799577	chromoarm	16148	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4934038	4934268	AT4TE20580	.	+	ATHILA3	Gypsy	LTR	230	short	243	high	1800364	chromoarm	15294	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4934268	4934290	AT4TE20585	.	+	ATHILA3	Gypsy	LTR	22	tiny	243	high	1800594	chromoarm	15272	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	4934295	4934322	AT4TE20590	.	+	ATHILA4D_LTR	Gypsy	LTR	27	tiny	106	medium	1800621	chromoarm	15240	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4934322	4934517	AT4TE20595	.	+	ATHILA4A	Gypsy	LTR	195	short	310	high	1800648	chromoarm	15045	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4935830	4936478	AT4TE20600	.	+	ATGP8	Gypsy	LTR	648	short	92	medium	1802156	chromoarm	13084	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4937435	4937532	AT4TE20605	.	+	ATGP8	Gypsy	LTR	97	tiny	92	medium	1803761	chromoarm	12030	RDR6-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	4938492	4939143	AT4TE20610	.	+	ATGP8	Gypsy	LTR	651	short	92	medium	1804818	chromoarm	10419	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	4940157	4940632	AT4TE20615	.	-	ATHILA3	Gypsy	LTR	475	short	243	high	1806483	chromoarm	8930	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	4940633	4942176	AT4TE20620	.	-	ATHILA4A	Gypsy	LTR	1543	short	310	high	1806959	chromoarm	7386	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4942176	4942273	AT4TE20625	.	-	ATHILA4	Gypsy	LTR	97	tiny	250	high	1808502	chromoarm	7289	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr4	4942273	4942305	AT4TE20630	.	+	ATHILA4	Gypsy	LTR	32	tiny	250	high	1808599	chromoarm	7257	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	4942305	4942544	AT4TE20635	.	+	ATHILA4A	Gypsy	LTR	239	short	310	high	1808631	chromoarm	7018	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	4942544	4943618	AT4TE20640	.	+	ATHILA4A	Gypsy	LTR	1074	short	310	high	1808870	chromoarm	5944	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4943618	4944682	AT4TE20645	.	+	ATHILA4B_LTR	Gypsy	LTR	1064	short	143	medium	1809944	chromoarm	4880	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	4944682	4947658	AT4TE20650	.	-	ATHILA4	Gypsy	LTR	2976	medium	250	high	1811008	chromoarm	1904	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	4947658	4947738	AT4TE20655	.	-	ATREP3	Helitron	RC	80	tiny	1439	high	1813984	chromoarm	1824	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	4947738	4947931	AT4TE20660	.	-	HELITRONY1B	Helitron	RC	193	short	414	high	1814064	chromoarm	1631	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	4947931	4948153	AT4TE20665	.	+	ATDNATA1	Mariner	DNA	222	short	28	low	1814257	chromoarm	1409	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4948153	4949024	AT4TE20670	.	+	ATREP10B	Helitron	RC	871	short	491	high	1814479	chromoarm	538	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4949024	4949065	AT4TE20675	.	-	ATREP13	Helitron	RC	41	tiny	106	medium	1815350	chromoarm	497	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4949239	4949556	AT4TE20680	.	-	ATHILA4	Gypsy	LTR	317	short	250	high	1815565	chromoarm	6	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4949890	4950489	AT4TE20685	.	+	ATHILA4C	Gypsy	LTR	599	short	206	high	1816216	chromoarm	145	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4950489	4952156	AT4TE20690	.	+	ATHILA4	Gypsy	LTR	1667	short	250	high	1816815	chromoarm	744	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4951150	4951391	AT4TE20695	.	-	ATHILA4A	Gypsy	LTR	241	short	310	high	1817476	chromoarm	1405	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4952156	4952428	AT4TE20700	.	+	ATHILA4	Gypsy	LTR	272	short	250	high	1818482	chromoarm	2411	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4952672	4954818	AT4TE20705	.	+	ATHILA4	Gypsy	LTR	2146	medium	250	high	1818998	chromoarm	2927	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr4	4954818	4955295	AT4TE20710	.	-	ATREP10D	Helitron	RC	477	short	1295	high	1821144	chromoarm	5073	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4955905	4956266	AT4TE20715	.	-	ATDNA12T3_2	.	DNA	361	short	660	high	1822231	chromoarm	6160	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	4956331	4956480	AT4TE20720	.	+	ATSINE4	.	SINE	149	short	98	medium	1822657	chromoarm	6586	RDR6-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	4956516	4956560	AT4TE20725	.	-	ARNOLD3	MuDR	DNA	44	tiny	45	low	1822842	chromoarm	6771	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr4	4956560	4957744	AT4TE20730	.	+	HELITRONY3	Helitron	RC	1184	short	1399	high	1822886	chromoarm	6815	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	4957756	4957975	AT4TE20735	.	+	ATHATN3	HAT	DNA	219	short	70	medium	1824082	chromoarm	8011	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	4958134	4958193	AT4TE20740	.	+	ATHILA0_I	Gypsy	LTR	59	tiny	138	medium	1824460	chromoarm	8389	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4958194	4969597	AT4TE20745	.	+	ATHILA2	Gypsy	LTR	11403	long	413	high	1824520	chromoarm	8449	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	4967708	4968604	+	transcript_id-"c7ca8f21-4a43-47b6-a80a-fe2a09c28f1c|3"
Chr4	4973590	4973753	AT4TE20760	.	-	VANDAL1	MuDR	DNA	163	short	80	medium	1839916	chromoarm	23845	no-CHH	no-RdDM	.	.	.	.	.
Chr4	4974448	4974777	AT4TE20765	.	+	ATENSPM6	En-Spm	DNA	329	short	151	medium	1840774	chromoarm	24703	no-RdDM	no-CHH	.	.	.	.	.
Chr4	4977420	4978431	AT4TE20775	.	-	ATHILA8B	Gypsy	LTR	1011	short	78	medium	1843746	chromoarm	25664	no-RdDM	no-CHH	.	.	.	.	.
Chr4	4978431	4978832	AT4TE20780	.	-	ATHILA4A	Gypsy	LTR	401	short	310	high	1844757	chromoarm	25263	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	4978833	4979117	AT4TE20785	.	+	ATREP7	Helitron	RC	284	short	164	medium	1845159	chromoarm	24978	no-RdDM	no-CHH	.	.	.	.	.
Chr4	4980171	4980204	AT4TE20790	.	-	ATENSPM9	En-Spm	DNA	33	tiny	97	medium	1846497	chromoarm	23891	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	4980204	4980245	AT4TE20795	.	-	ATENSPM6	En-Spm	DNA	41	tiny	151	medium	1846530	chromoarm	23850	no-RdDM	no-CHH	.	.	.	.	.
Chr4	4980245	4984203	AT4TE20800	.	-	ATENSPM6	En-Spm	DNA	3958	medium	151	medium	1846571	chromoarm	19892	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	4983761	4980813	-	transcript_id-"29322f19-fb9d-4b0a-bc22-48c76e165351|34"
Chr4	4984203	4985259	AT4TE20805	.	-	ATENSPM5	En-Spm	DNA	1056	short	111	medium	1850529	chromoarm	18836	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4985260	4985657	AT4TE20810	.	+	BRODYAGA2	MuDR	DNA	397	short	525	high	1851586	chromoarm	18438	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	4985664	4989222	AT4TE20815	.	-	ATENSPM5	En-Spm	DNA	3558	medium	111	medium	1851990	chromoarm	14873	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	4987034	4986824	-	transcript_id-"b3da6b24-e082-4276-bbfd-eda14e2f8e03|3"
Chr4	4992708	4992763	AT4TE20825	.	-	HELITRON2	Helitron	RC	55	tiny	194	medium	1859034	chromoarm	11332	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr4	4992763	4993125	AT4TE20830	.	-	HELITRON2	Helitron	RC	362	short	194	medium	1859089	chromoarm	10970	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	4993125	4993186	AT4TE20835	.	+	ATMUN1	MuDR	DNA	61	tiny	107	medium	1859451	chromoarm	10909	no-RdDM	no-CHH	.	.	.	.	.
Chr4	4993201	4994551	AT4TE20840	.	-	ATCOPIA49	Copia	LTR	1350	short	34	low	1859527	chromoarm	9544	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	4994551	4994597	AT4TE20845	.	-	ATCOPIA44	Copia	LTR	46	tiny	12	low	1860877	chromoarm	9498	RDR6-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	4994597	4994689	AT4TE20850	.	-	ATCOPIA69	Copia	LTR	92	tiny	25	low	1860923	chromoarm	9406	no-RdDM	no-RdDM	ExpressedAndAnnotated	4997804	4994570	-	transcript_id-"59a0a033-990c-4f9c-82d9-0f28695fdb1f|3"
Chr4	4995142	4995269	AT4TE20855	.	-	HELITRONY3	Helitron	RC	127	short	1399	high	1861468	chromoarm	8826	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	4995269	4996187	AT4TE20860	.	-	ATREP4	Helitron	RC	918	short	832	high	1861595	chromoarm	7908	no-CHH	no-RdDM	ExpressedAndAnnotated	4997775	4996058	-	transcript_id-"06d44459-bae9-4617-8065-4525461833c0|7"
Chr4	4996187	4996443	AT4TE20865	.	+	ATREP3	Helitron	RC	256	short	1439	high	1862513	chromoarm	7652	no-CHH	PolIV-RdDM	ExpressedAndAnnotated	4997775	4996058	-	transcript_id-"06d44459-bae9-4617-8065-4525461833c0|7"
Chr4	4997990	4999145	AT4TE20870	.	-	ATGP8	Gypsy	LTR	1155	short	92	medium	1864316	chromoarm	4950	no-RdDM	no-CHH	.	.	.	.	.
Chr4	4999145	4999938	AT4TE20875	.	-	ATGP1	Gypsy	LTR	793	short	144	medium	1865471	chromoarm	4157	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	4999938	5000000	AT4TE20880	.	-	ATGP2N	Gypsy	LTR	62	tiny	54	medium	1866264	chromoarm	4095	no-RdDM	no-CHH	.	.	.	.	.
Chr4	5000000	5001509	AT4TE20885	.	-	ATGP2N	Gypsy	LTR	1509	short	54	medium	1866326	chromoarm	2586	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	5001762	5002797	AT4TE20890	.	+	ATGP5	Gypsy	LTR	1035	short	86	medium	1868088	chromoarm	1298	no-RdDM	no-CHH	.	.	.	.	.
Chr4	5003243	5004820	AT4TE20895	.	-	ATHILA4A	Gypsy	LTR	1577	short	310	high	1869569	chromoarm	0	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5004963	5005018	AT4TE20900	.	-	ATHILA4A	Gypsy	LTR	55	tiny	310	high	1871289	chromoarm	0	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5005018	5005167	AT4TE20905	.	-	ATHILA4	Gypsy	LTR	149	short	250	high	1871344	chromoarm	0	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5008018	5008398	AT4TE20915	.	-	ATLANTYS2	Gypsy	LTR	380	short	179	medium	1874344	chromoarm	2086	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5008398	5010148	AT4TE20920	.	-	ATHILA2	Gypsy	LTR	1750	short	413	high	1874724	chromoarm	2466	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5010149	5010709	AT4TE20925	.	-	ATLANTYS2	Gypsy	LTR	560	short	179	medium	1876475	chromoarm	4217	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	5010734	5012472	AT4TE20930	.	-	ATHILA4A	Gypsy	LTR	1738	short	310	high	1877060	chromoarm	4802	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	5012472	5013612	AT4TE20935	.	-	ATHILA4	Gypsy	LTR	1140	short	250	high	1878798	chromoarm	6540	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	5013612	5013679	AT4TE20940	.	-	ATHILA4	Gypsy	LTR	67	tiny	250	high	1879938	chromoarm	7680	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5013680	5016267	AT4TE20945	.	-	ATGP1	Gypsy	LTR	2587	medium	144	medium	1880006	chromoarm	7748	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	5016267	5017502	AT4TE20950	.	-	ATHILA6A	Gypsy	LTR	1235	short	247	high	1882593	chromoarm	10335	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	5017346	5015596	-	transcript_id-"9fd740fc-9e64-4ea8-8dd4-f70d4f80eb6f|10"
Chr4	5017507	5019418	AT4TE20955	.	+	ATHILA4	Gypsy	LTR	1911	short	250	high	1883833	chromoarm	11575	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr4	5019418	5019701	AT4TE20960	.	+	ATHILA4A	Gypsy	LTR	283	short	310	high	1885744	chromoarm	13486	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5019701	5021348	AT4TE20965	.	+	ATHILA4B_LTR	Gypsy	LTR	1647	short	143	medium	1886027	chromoarm	13769	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	5021348	5023155	AT4TE20970	.	-	ATHILA6A	Gypsy	LTR	1807	short	247	high	1887674	chromoarm	15416	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr4	5023452	5027709	AT4TE20975	.	-	ATGP1	Gypsy	LTR	4257	medium	144	medium	1889778	chromoarm	17520	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5027709	5027740	AT4TE20980	.	-	ATGP1	Gypsy	LTR	31	tiny	144	medium	1894035	chromoarm	21777	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	5028044	5028073	AT4TE20985	.	-	ATHILA4	Gypsy	LTR	29	tiny	250	high	1894370	chromoarm	22112	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	5028073	5031651	AT4TE20990	.	-	ATHILA4C	Gypsy	LTR	3578	medium	206	high	1894399	chromoarm	22141	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	5028523	5030098	AT4TE20995	.	-	ATHILA8A	Gypsy	LTR	1575	short	97	medium	1894849	chromoarm	22591	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr4	5031659	5032190	AT4TE21000	.	-	ATLANTYS1	Gypsy	LTR	531	short	153	medium	1897985	chromoarm	25727	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5032193	5033203	AT4TE21005	.	+	ATHILA4B_LTR	Gypsy	LTR	1010	short	143	medium	1898519	chromoarm	26261	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5033403	5034044	AT4TE21010	.	-	ATHILA4A	Gypsy	LTR	641	short	310	high	1899729	chromoarm	27471	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	5034227	5034252	AT4TE21015	.	+	ATHILA4A	Gypsy	LTR	25	tiny	310	high	1900553	chromoarm	28295	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5034252	5036635	AT4TE21020	.	+	ATHILA4A	Gypsy	LTR	2383	medium	310	high	1900578	chromoarm	28320	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5036635	5036829	AT4TE21025	.	+	ATMU2	MuDR	DNA	194	short	64	medium	1902961	chromoarm	30703	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5037502	5037690	AT4TE21030	.	-	ATMU2	MuDR	DNA	188	short	64	medium	1903828	chromoarm	31570	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	5037690	5038245	AT4TE21035	.	+	ATHILA4A	Gypsy	LTR	555	short	310	high	1904016	chromoarm	31758	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5038245	5039017	AT4TE21040	.	+	ATHILA4A	Gypsy	LTR	772	short	310	high	1904571	chromoarm	32313	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	5039023	5039047	AT4TE21045	.	-	ATCOPIA66	Copia	LTR	24	tiny	20	low	1905349	chromoarm	33091	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	5039047	5043757	AT4TE21050	.	-	ATCOPIA10	Copia	LTR	4710	medium	7	low	1905373	chromoarm	33115	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	5043757	5057116	AT4TE21055	.	-	ATHILA0_I	Gypsy	LTR	13359	long	138	medium	1910083	chromoarm	37825	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	5046156,5046142	5044577,5045967	-,-	transcript_id-"62b05322-14e8-444d-b6e3-d831c72c95f2|14",transcript_id-"74372209-6f34-4f15-b2d9-4d65299f3c39|10"
Chr4	5057116	5057556	AT4TE21060	.	-	ATGP2N	Gypsy	LTR	440	short	54	medium	1923442	chromoarm	51184	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr4	5057556	5057643	AT4TE21065	.	-	ATGP2N	Gypsy	LTR	87	tiny	54	medium	1923882	chromoarm	51624	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	5057643	5060007	AT4TE21070	.	-	ATHILA	Gypsy	LTR	2364	medium	198	medium	1923969	chromoarm	51711	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	5060007	5060654	AT4TE21075	.	-	ATHILA	Gypsy	LTR	647	short	198	medium	1926333	chromoarm	54075	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	5060654	5060674	AT4TE21080	.	-	ATHILA6B	Gypsy	LTR	20	tiny	134	medium	1926980	chromoarm	54722	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	5060674	5063536	AT4TE21085	.	-	ATHILA6A	Gypsy	LTR	2862	medium	247	high	1927000	chromoarm	54742	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	5063537	5074228	AT4TE21090	.	-	ATLANTYS1	Gypsy	LTR	10691	long	153	medium	1929863	chromoarm	57605	no-RdDM	no-RdDM	ExpressedAndAnnotated	5066878	5067594	+	transcript_id-"0f3d2024-d8f3-4e2d-918f-deaee5566118|3"
Chr4	5074229	5075819	AT4TE21095	.	-	ATHILA	Gypsy	LTR	1590	short	198	medium	1940555	chromoarm	59853	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5075820	5076471	AT4TE21100	.	+	ATHILA3	Gypsy	LTR	651	short	243	high	1942146	chromoarm	59201	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5079651	5083590	AT4TE21110	.	+	Unassigned	.	Unassigned	3939	medium	.	low	1945977	chromoarm	52082	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	5083925	5086640	AT4TE21115	.	-	Unassigned	.	Unassigned	2715	medium	.	low	1950251	chromoarm	49032	no-CHH	no-RdDM	ExpressedAndAnnotated	5086592	5083928	-	transcript_id-"0527e834-798f-4476-a71b-c2fe311eb743|4"
Chr4	5088388	5088421	AT4TE21120	.	+	HELITRON4	Helitron	RC	33	tiny	199	medium	1954714	chromoarm	47251	PolIV-RdDM	RDR6-RdDM	.	.	.	.	.
Chr4	5088685	5089818	AT4TE21125	.	-	ATHILA4	Gypsy	LTR	1133	short	250	high	1955011	chromoarm	45854	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	5089971	5089996	AT4TE21130	.	+	ATHILA4A	Gypsy	LTR	25	tiny	310	high	1956297	chromoarm	45676	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5089996	5096803	AT4TE21135	.	+	ATHILA4A	Gypsy	LTR	6807	long	310	high	1956322	chromoarm	38869	no-RdDM	no-RdDM	ExpressedAndAnnotated	5093486,5093487	5091748,5091750	-,-	transcript_id-"9b8650e9-0229-4840-a403-be469aa84ba4|4",transcript_id-"ffaa7683-01c3-464e-8d7a-54c94da1327d|4"
Chr4	5091340	5093786	AT4TE21140	.	-	ATENSPM10	En-Spm	DNA	2446	medium	81	medium	1957666	chromoarm	41886	no-RdDM	no-RdDM	ExpressedAndAnnotated	5093486,5093487	5091748,5091750	-,-	transcript_id-"9b8650e9-0229-4840-a403-be469aa84ba4|4",transcript_id-"ffaa7683-01c3-464e-8d7a-54c94da1327d|4"
Chr4	5092789	5092854	AT4TE21145	.	-	ATENSPM10	En-Spm	DNA	65	tiny	81	medium	1959115	chromoarm	42818	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	5096803	5098792	AT4TE21160	.	+	ATGP2N	Gypsy	LTR	1989	short	54	medium	1963129	chromoarm	36880	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	5098794	5099260	AT4TE21165	.	+	ATHILA4	Gypsy	LTR	466	short	250	high	1965120	chromoarm	36412	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5099260	5102646	AT4TE21170	.	-	ATHILA3	Gypsy	LTR	3386	medium	243	high	1965586	chromoarm	33026	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	5102207,5102221	5100174,5101633	-,-	transcript_id-"a621f6dd-8153-4408-97ab-9252e8c87c2f|8",transcript_id-"4d837a4f-3334-4568-8705-d83420749ab4|32"
Chr4	5102646	5102674	AT4TE21175	.	-	ATHILA5	Gypsy	LTR	28	tiny	131	medium	1968972	chromoarm	32998	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	5102686	5103112	AT4TE21180	.	-	ATHILA5	Gypsy	LTR	426	short	131	medium	1969012	chromoarm	32560	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	5103112	5103208	AT4TE21185	.	-	ATHILA5	Gypsy	LTR	96	tiny	131	medium	1969438	chromoarm	32464	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	5103208	5104725	AT4TE21190	.	-	ATHILA5	Gypsy	LTR	1517	short	131	medium	1969534	chromoarm	30947	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr4	5104725	5104929	AT4TE21195	.	-	ATHILA2	Gypsy	LTR	204	short	413	high	1971051	chromoarm	30743	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	5104929	5109992	AT4TE21200	.	-	ATHILA3	Gypsy	LTR	5063	long	243	high	1971255	chromoarm	25680	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr4	5109992	5110278	AT4TE21205	.	+	ATHILA4A	Gypsy	LTR	286	short	310	high	1976318	chromoarm	25394	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5110278	5110477	AT4TE21210	.	+	ATREP11	Helitron	RC	199	short	841	high	1976604	chromoarm	25195	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5110477	5110651	AT4TE21215	.	+	ATREP11	Helitron	RC	174	short	841	high	1976803	chromoarm	25021	no-RdDM	no-CHH	.	.	.	.	.
Chr4	5110651	5116412	AT4TE21220	.	+	ATREP11	Helitron	RC	5761	long	841	high	1976977	chromoarm	19260	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5111684	5112508	AT4TE21225	.	+	ATREP11	Helitron	RC	824	short	841	high	1978010	chromoarm	23164	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5112508	5112664	AT4TE21230	.	-	ATREP10B	Helitron	RC	156	short	491	high	1978834	chromoarm	23008	no-CHH	no-CHH	.	.	.	.	.
Chr4	5112664	5112771	AT4TE21235	.	+	HELITRONY1D	Helitron	RC	107	short	756	high	1978990	chromoarm	22901	no-CHH	no-CHH	.	.	.	.	.
Chr4	5112771	5114119	AT4TE21240	.	+	ATDNA2T9C	MuDR	DNA	1348	short	242	high	1979097	chromoarm	21553	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	5114119	5114405	AT4TE21245	.	+	ATREP2	Helitron	RC	286	short	164	medium	1980445	chromoarm	21267	no-CHH	no-CHH	.	.	.	.	.
Chr4	5114405	5114872	AT4TE21250	.	+	HELITRONY1E	Helitron	RC	467	short	447	high	1980731	chromoarm	20800	no-CHH	no-CHH	.	.	.	.	.
Chr4	5116412	5119753	AT4TE21255	.	+	ATGP8	Gypsy	LTR	3341	medium	92	medium	1982738	chromoarm	15919	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5118812	5118870	AT4TE21260	.	+	ATGP8	Gypsy	LTR	58	tiny	92	medium	1985138	chromoarm	16802	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	5119754	5120828	AT4TE21265	.	-	ATHILA4	Gypsy	LTR	1074	short	250	high	1986080	chromoarm	14844	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	5120999	5121086	AT4TE21270	.	-	ATHILA4	Gypsy	LTR	87	tiny	250	high	1987325	chromoarm	14586	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	5121086	5121718	AT4TE21275	.	-	ATHILA4B_LTR	Gypsy	LTR	632	short	143	medium	1987412	chromoarm	13954	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5126091	5127099	AT4TE21290	.	+	VANDAL17	MuDR	DNA	1008	short	178	medium	1992417	chromoarm	8573	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5127100	5135152	AT4TE21295	.	-	ATGP1	Gypsy	LTR	8052	long	144	medium	1993426	chromoarm	520	no-RdDM	no-RdDM	ExpressedAndAnnotated	5128133	5127186	-	transcript_id-"95c4b973-60aa-45f8-a6c7-94045ea296ee|29"
Chr4	5135153	5135490	AT4TE21300	.	+	VANDAL17	MuDR	DNA	337	short	178	medium	2001479	chromoarm	182	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr4	5136511	5138048	AT4TE21305	.	+	ATIS112A	Harbinger	DNA	1537	short	173	medium	2002837	chromoarm	371	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	5138048	5138103	AT4TE21310	.	+	ATIS112A	Harbinger	DNA	55	tiny	173	medium	2004374	chromoarm	1908	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5138387	5139965	AT4TE21315	.	+	ATIS112A	Harbinger	DNA	1578	short	173	medium	2004713	chromoarm	2247	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5139965	5140006	AT4TE21320	.	+	VANDAL17	MuDR	DNA	41	tiny	178	medium	2006291	chromoarm	3825	no-RdDM	no-CHH	.	.	.	.	.
Chr4	5140006	5141644	AT4TE21325	.	+	VANDAL17	MuDR	DNA	1638	short	178	medium	2006332	chromoarm	3866	no-RdDM	no-CHH	.	.	.	.	.
Chr4	5141644	5142093	AT4TE21330	.	+	HELITRONY1D	Helitron	RC	449	short	756	high	2007970	chromoarm	5504	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	5142500	5142898	AT4TE21335	.	-	ATREP10B	Helitron	RC	398	short	491	high	2008826	chromoarm	5070	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5143517	5144031	AT4TE21340	.	+	ATREP15	Helitron	RC	514	short	1003	high	2009843	chromoarm	3937	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5144108	5144778	AT4TE21345	.	+	TNAT1A	.	DNA	670	short	162	medium	2010434	chromoarm	3190	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5144778	5145016	AT4TE21350	.	+	ATREP18	.	DNA	238	short	391	high	2011104	chromoarm	2952	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	5145213	5145376	AT4TE21355	.	+	ATMU5	MuDR	DNA	163	short	24	low	2011539	chromoarm	2592	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	5147083	5147207	AT4TE21360	.	-	ATCOPIA27	Copia	LTR	124	short	19	low	2013409	chromoarm	761	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr4	5150971	5151062	AT4TE21380	.	-	VANDAL8	MuDR	DNA	91	tiny	123	medium	2017297	chromoarm	361	no-CHH	no-CHH	.	.	.	.	.
Chr4	5153293	5153338	AT4TE21390	.	+	ATREP6	Helitron	RC	45	tiny	181	medium	2019619	chromoarm	1314	no-CHH	no-CHH	.	.	.	.	.
Chr4	5153338	5155259	AT4TE21395	.	+	HELITRONY3	Helitron	RC	1921	short	1399	high	2019664	chromoarm	1359	no-CHH	no-CHH	.	.	.	.	.
Chr4	5157673	5158221	AT4TE21405	.	+	HELITRON2	Helitron	RC	548	short	194	medium	2023999	chromoarm	989	no-CHH	no-CHH	.	.	.	.	.
Chr4	5158925	5159012	AT4TE21410	.	-	RathE2_cons	.	RathE2_cons	87	tiny	74	medium	2025251	chromoarm	198	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5159488	5160308	AT4TE21415	.	+	ATREP15	Helitron	RC	820	short	1003	high	2025814	chromoarm	0	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	5160308	5160365	AT4TE21420	.	+	ATREP7	Helitron	RC	57	tiny	164	medium	2026634	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	5166541	5166615	AT4TE21450	.	+	ATLINE1A	L1	LINE	74	tiny	289	high	2032867	chromoarm	0	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5166615	5166779	AT4TE21455	.	+	ATLINE1A	L1	LINE	164	short	289	high	2032941	chromoarm	0	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	5167254	5167880	AT4TE21460	.	-	HELITRON4	Helitron	RC	626	short	199	medium	2033580	chromoarm	254	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	5167880	5167927	AT4TE21465	.	-	ATREP5	Helitron	RC	47	tiny	624	high	2034206	chromoarm	639	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5168071	5168435	AT4TE21470	.	+	ATLINE1_4	L1	LINE	364	short	102	medium	2034397	chromoarm	131	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	5168877	5169357	AT4TE21475	.	-	HELITRONY3	Helitron	RC	480	short	1399	high	2035203	chromoarm	188	no-CHH	no-CHH	.	.	.	.	.
Chr4	5174258	5174474	AT4TE21500	.	-	ATIS112A	Harbinger	DNA	216	short	173	medium	2040584	chromoarm	48	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	5175998	5176243	AT4TE21505	.	-	ATIS112A	Harbinger	DNA	245	short	173	medium	2042324	chromoarm	522	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	5176049,5176049	5174412,5175188	-,-	transcript_id-"4dcbdab9-ae60-4069-801a-8d1face5e83d|6",transcript_id-"4b2533f7-b461-4bd3-aca0-be48f073896e|4"
Chr4	5176243	5176279	AT4TE21510	.	-	ARNOLDY2	MuDR	DNA	36	tiny	288	high	2042569	chromoarm	767	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	5176279	5176311	AT4TE21515	.	+	HELITRONY3	Helitron	RC	32	tiny	1399	high	2042605	chromoarm	803	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	5176311	5178428	AT4TE21520	.	-	ARNOLDY1	MuDR	DNA	2117	medium	237	high	2042637	chromoarm	835	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	5178428	5178570	AT4TE21525	.	+	ARNOLDY1	MuDR	DNA	142	short	237	high	2044754	chromoarm	2952	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	5178570	5178809	AT4TE21530	.	+	HELITRONY3	Helitron	RC	239	short	1399	high	2044896	chromoarm	3094	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr4	5178904	5178928	AT4TE21535	.	-	ATHILA2	Gypsy	LTR	24	tiny	413	high	2045230	chromoarm	3428	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5178928	5180759	AT4TE21540	.	-	ATHILA6A	Gypsy	LTR	1831	short	247	high	2045254	chromoarm	3053	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	5180759	5180785	AT4TE21545	.	-	ATHILA6B	Gypsy	LTR	26	tiny	134	medium	2047085	chromoarm	3027	no-CHH	DCL3-RdDM	.	.	.	.	.
Chr4	5180785	5182116	AT4TE21550	.	-	ATREP10D	Helitron	RC	1331	short	1295	high	2047111	chromoarm	1696	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5182116	5182587	AT4TE21555	.	+	HARBINGER	Harbinger	DNA	471	short	90	medium	2048442	chromoarm	1225	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	5186505	5186613	AT4TE21570	.	+	VANDAL17	MuDR	DNA	108	short	178	medium	2052831	chromoarm	632	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	5186613	5187553	AT4TE21575	.	+	VANDAL17	MuDR	DNA	940	short	178	medium	2052939	chromoarm	493	no-CHH	no-CHH	ExpressedAndAnnotated	5186433	5187736	+	transcript_id-"e63922a9-04c7-418a-a17c-6b46719ff96b|10"
Chr4	5189779	5189907	AT4TE21585	.	+	BRODYAGA2	MuDR	DNA	128	short	525	high	2056105	chromoarm	205	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	5189907	5190741	AT4TE21590	.	-	SIMPLEGUY1	Harbinger	DNA	834	short	116	medium	2056233	chromoarm	333	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5190741	5190858	AT4TE21595	.	-	SIMPLEGUY1	Harbinger	DNA	117	short	116	medium	2057067	chromoarm	1167	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	5190858	5190958	AT4TE21600	.	-	BRODYAGA1	MuDR	DNA	100	short	251	high	2057184	chromoarm	1284	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5191090	5191255	AT4TE21605	.	-	BRODYAGA1	MuDR	DNA	165	short	251	high	2057416	chromoarm	1516	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5191255	5191477	AT4TE21610	.	-	HARBINGER	Harbinger	DNA	222	short	90	medium	2057581	chromoarm	1681	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5191529	5192076	AT4TE21615	.	-	TSCL	.	LINE?	547	short	81	medium	2057855	chromoarm	1955	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5192076	5192448	AT4TE21620	.	-	HELITRONY2	Helitron	RC	372	short	198	medium	2058402	chromoarm	2264	no-CHH	no-CHH	.	.	.	.	.
Chr4	5192448	5192471	AT4TE21625	.	-	ATREP10A	Helitron	RC	23	tiny	279	high	2058774	chromoarm	2241	no-CHH	no-CHH	.	.	.	.	.
Chr4	5192471	5194635	AT4TE21630	.	+	ATREP10A	Helitron	RC	2164	medium	279	high	2058797	chromoarm	77	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	5194635	5194669	AT4TE21635	.	+	BRODYAGA1A	MuDR	DNA	34	tiny	586	high	2060961	chromoarm	43	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	5194669	5194703	AT4TE21640	.	+	ATREP10D	Helitron	RC	34	tiny	1295	high	2060995	chromoarm	9	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	5198885	5198955	AT4TE21660	.	+	BRODYAGA2	MuDR	DNA	70	tiny	525	high	2065211	chromoarm	647	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	5198955	5200445	AT4TE21665	.	+	ATREP11	Helitron	RC	1490	short	841	high	2065281	chromoarm	401	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5200455	5202850	AT4TE21670	.	+	VANDAL5A	MuDR	DNA	2395	medium	56	medium	2066781	chromoarm	0	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	5202344	5202406	AT4TE21675	.	+	VANDAL5A	MuDR	DNA	62	tiny	56	medium	2068670	chromoarm	479	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	5203232	5203401	AT4TE21680	.	+	ATDNAI27T9B	MuDR	DNA	170	short	43	low	2069557	chromoarm	1366	.	.	.	.	.	.	.
Chr4	5203561	5203980	AT4TE21685	.	+	LIMPET1	MuDR	DNA	419	short	116	medium	2069887	chromoarm	1696	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5203980	5204468	AT4TE21690	.	+	ATREP4	Helitron	RC	488	short	832	high	2070306	chromoarm	2115	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	5204468	5210326	AT4TE21695	.	+	ATLINE1_6	L1	LINE	5858	long	129	medium	2070794	chromoarm	1277	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	5212220	5212251	AT4TE21705	.	-	ATREP11	Helitron	RC	31	tiny	841	high	2078546	chromoarm	83	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	5212251	5213568	AT4TE21710	.	-	ATREP15	Helitron	RC	1317	short	1003	high	2078577	chromoarm	114	no-RdDM	no-CHH	.	.	.	.	.
Chr4	5214178	5215615	AT4TE21715	.	-	Unassigned	.	Unassigned	1437	short	.	low	2080504	chromoarm	2041	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	5217904	5218636	AT4TE21725	.	+	ATIS112A	Harbinger	DNA	732	short	173	medium	2084230	chromoarm	0	no-RdDM	no-CHH	.	.	.	.	.
Chr4	5218932	5219578	AT4TE21730	.	-	HELITRONY3	Helitron	RC	646	short	1399	high	2085258	chromoarm	528	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	5219583	5220648	AT4TE21735	.	-	ATGP1	Gypsy	LTR	1065	short	144	medium	2085909	chromoarm	1179	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	5220522	5219671	-	transcript_id-"31079bdb-7f5f-4014-9f1e-1977e6df1789|3"
Chr4	5221693	5221790	AT4TE21740	.	+	ATHILA2	Gypsy	LTR	97	tiny	413	high	2088019	chromoarm	3289	no-RdDM	no-CHH	.	.	.	.	.
Chr4	5221790	5221918	AT4TE21745	.	+	ATHILA5	Gypsy	LTR	128	short	131	medium	2088116	chromoarm	3386	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	5221918	5224018	AT4TE21750	.	+	ATHILA3	Gypsy	LTR	2100	medium	243	high	2088244	chromoarm	3514	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	5224951	5226125	AT4TE21755	.	-	ATHILA4D_LTR	Gypsy	LTR	1174	short	106	medium	2091277	chromoarm	4219	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5226996	5227320	AT4TE21760	.	-	ATREP10D	Helitron	RC	324	short	1295	high	2093322	chromoarm	3024	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5227320	5227439	AT4TE21765	.	-	ATREP15	Helitron	RC	119	short	1003	high	2093646	chromoarm	2905	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5227439	5227526	AT4TE21770	.	+	ATREP4	Helitron	RC	87	tiny	832	high	2093765	chromoarm	2818	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5227526	5229890	AT4TE21775	.	+	ATREP15	Helitron	RC	2364	medium	1003	high	2093852	chromoarm	454	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5230691	5230870	AT4TE21780	.	+	ATREP10A	Helitron	RC	179	short	279	high	2097017	chromoarm	0	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5233462	5233974	AT4TE21790	.	-	HELITRONY1E	Helitron	RC	513	short	447	high	2099787	chromoarm	2265	.	.	.	.	.	.	.
Chr4	5233974	5234678	AT4TE21795	.	+	ATREP4	Helitron	RC	704	short	832	high	2100300	chromoarm	2778	no-CHH	no-CHH	.	.	.	.	.
Chr4	5234678	5234742	AT4TE21800	.	+	ATREP3	Helitron	RC	64	tiny	1439	high	2101004	chromoarm	3482	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5237865	5238312	AT4TE21810	.	+	ATSINE4	.	SINE	448	short	98	medium	2104190	chromoarm	775	.	.	.	.	.	.	.
Chr4	5242432	5242777	AT4TE21830	.	+	ATLINE2	L1	LINE	345	short	138	medium	2108758	chromoarm	1571	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	5246783	5247334	AT4TE21850	.	-	ATREP10B	Helitron	RC	551	short	491	high	2113109	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5247334	5247432	AT4TE21855	.	-	ATREP10	Helitron	RC	98	tiny	63	medium	2113660	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	5252193	5252624	AT4TE21880	.	-	ATHATN4	HAT	DNA	431	short	56	medium	2118519	chromoarm	54	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5257026	5271699	AT4TE21900	.	+	VANDAL11	MuDR	DNA	14673	long	18	low	2123352	chromoarm	501	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	5271709	5271737	AT4TE21905	.	+	ATGP1	Gypsy	LTR	28	tiny	144	medium	2138035	chromoarm	14613	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5271737	5273005	AT4TE21910	.	+	ATGP1	Gypsy	LTR	1268	short	144	medium	2138063	chromoarm	13345	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	5271862,5271862	5272785,5272802	+,+	transcript_id-"1d89806c-1a18-4e77-abc4-8fcad9569f01|9",transcript_id-"6f0796bf-e07a-41cf-8f65-6af8096821bb|4"
Chr4	5273005	5273931	AT4TE21915	.	+	ATREP10D	Helitron	RC	926	short	1295	high	2139331	chromoarm	12419	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	5273931	5273987	AT4TE21920	.	+	ATREP3	Helitron	RC	56	tiny	1439	high	2140257	chromoarm	12363	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5273987	5275961	AT4TE21925	.	+	HELITRONY1A	Helitron	RC	1974	short	271	high	2140313	chromoarm	10389	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5275961	5276931	AT4TE21930	.	+	ATREP5	Helitron	RC	970	short	624	high	2142287	chromoarm	9419	no-CHH	no-CHH	.	.	.	.	.
Chr4	5277529	5278745	AT4TE21935	.	+	HELITRONY1D	Helitron	RC	1216	short	756	high	2143855	chromoarm	7605	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	5278745	5278844	AT4TE21940	.	+	HELITRONY1D	Helitron	RC	99	tiny	756	high	2145071	chromoarm	7506	no-CHH	no-CHH	.	.	.	.	.
Chr4	5278844	5278901	AT4TE21945	.	+	HELITRONY1D	Helitron	RC	57	tiny	756	high	2145170	chromoarm	7449	no-CHH	no-CHH	.	.	.	.	.
Chr4	5278901	5279777	AT4TE21950	.	-	HELITRONY3	Helitron	RC	876	short	1399	high	2145227	chromoarm	6573	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5279777	5279800	AT4TE21955	.	-	HELITRONY3	Helitron	RC	23	tiny	1399	high	2146103	chromoarm	6550	no-CHH	no-CHH	.	.	.	.	.
Chr4	5279800	5279891	AT4TE21960	.	-	HELITRONY3	Helitron	RC	91	tiny	1399	high	2146126	chromoarm	6459	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5279891	5281636	AT4TE21965	.	+	ATREP6	Helitron	RC	1745	short	181	medium	2146217	chromoarm	4714	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5281636	5281844	AT4TE21970	.	+	ATREP15	Helitron	RC	208	short	1003	high	2147962	chromoarm	4506	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5281844	5281902	AT4TE21975	.	+	ATREP5	Helitron	RC	58	tiny	624	high	2148170	chromoarm	4448	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5281902	5282094	AT4TE21980	.	+	ATREP10D	Helitron	RC	192	short	1295	high	2148228	chromoarm	4256	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5282094	5283906	AT4TE21985	.	+	ATREP3	Helitron	RC	1812	short	1439	high	2148420	chromoarm	2444	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5283906	5284778	AT4TE21990	.	-	ARNOLDY1	MuDR	DNA	872	short	237	high	2150232	chromoarm	1572	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5284778	5284818	AT4TE21995	.	-	ATREP1	Helitron	RC	40	tiny	498	high	2151104	chromoarm	1532	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5292594	5292736	AT4TE22030	.	+	ATCOPIA95	Copia	LTR	142	short	72	medium	2158920	chromoarm	15	no-CHH	no-CHH	.	.	.	.	.
Chr4	5292737	5292832	AT4TE22035	.	-	ATCOPIA95	Copia	LTR	95	tiny	72	medium	2159063	chromoarm	158	no-CHH	no-CHH	.	.	.	.	.
Chr4	5292980	5294223	AT4TE22040	.	-	SIMPLEHAT1	HAT	DNA	1243	short	56	medium	2159306	chromoarm	401	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5294223	5294270	AT4TE22045	.	-	HELITRONY3	Helitron	RC	47	tiny	1399	high	2160549	chromoarm	1644	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr4	5294639	5295213	AT4TE22050	.	-	ATHATN2	HAT	DNA	574	short	46	low	2160965	chromoarm	719	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	5296511	5296595	AT4TE22055	.	+	ATLINE1_3A	L1	LINE	84	tiny	160	medium	2162837	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	5300133	5300215	AT4TE22065	.	-	ATDNA12T3_2	.	DNA	82	tiny	660	high	2166459	chromoarm	1746	no-CHH	no-CHH	.	.	.	.	.
Chr4	5300908	5301260	AT4TE22070	.	-	ATSINE4	.	SINE	352	short	98	medium	2167234	chromoarm	701	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5301260	5301334	AT4TE22075	.	-	ATSINE4	.	SINE	74	tiny	98	medium	2167586	chromoarm	627	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5303456	5303685	AT4TE22085	.	-	ATCOPIA94	Copia	LTR	229	short	39	low	2169782	chromoarm	142	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5303685	5303716	AT4TE22090	.	+	ATHATN8	HAT	DNA	31	tiny	15	low	2170011	chromoarm	371	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	5303772	5309049	AT4TE22095	.	-	ATCOPIA55	Copia	LTR	5277	long	9	low	2170098	chromoarm	458	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	5308679	5306911	-	transcript_id-"6354a074-00e4-4c0f-8308-25348fff84b5|10"
Chr4	5309059	5309156	AT4TE22100	.	+	ATHATN8	HAT	DNA	97	tiny	15	low	2175385	chromoarm	1936	no-RdDM	no-CHH	.	.	.	.	.
Chr4	5310460	5310864	AT4TE22105	.	+	HELITRON4	Helitron	RC	404	short	199	medium	2176786	chromoarm	228	no-CHH	no-CHH	.	.	.	.	.
Chr4	5313094	5313201	AT4TE22115	.	+	RathE1_cons	.	RathE1_cons	108	short	213	high	2179419	chromoarm	687	.	.	.	.	.	.	.
Chr4	5314200	5314491	AT4TE22120	.	+	ATMUNX1	MuDR	DNA	291	short	155	medium	2180526	chromoarm	507	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	5315073	5315314	AT4TE22125	.	+	ATENSPM1	En-Spm	DNA	241	short	30	low	2181399	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	5317518	5317616	AT4TE22135	.	-	ATLANTYS1	Gypsy	LTR	98	tiny	153	medium	2183844	chromoarm	447	no-CHH	no-CHH	.	.	.	.	.
Chr4	5318715	5319045	AT4TE22140	.	-	ATHILA8B	Gypsy	LTR	330	short	78	medium	2185041	chromoarm	588	no-CHH	no-CHH	.	.	.	.	.
Chr4	5321218	5321401	AT4TE22150	.	+	ATMU10	MuDR	DNA	183	short	87	medium	2187544	chromoarm	506	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5321413	5321458	AT4TE22155	.	+	ATMU10	MuDR	DNA	45	tiny	87	medium	2187739	chromoarm	701	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5321458	5321792	AT4TE22160	.	-	ATMU10	MuDR	DNA	334	short	87	medium	2187784	chromoarm	746	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5323990	5324201	AT4TE22170	.	-	ATHILA6A	Gypsy	LTR	212	short	247	high	2190315	chromoarm	0	.	.	.	.	.	.	.
Chr4	5325484	5326135	AT4TE22175	.	-	ATREP3	Helitron	RC	651	short	1439	high	2191810	chromoarm	143	no-CHH	no-CHH	.	.	.	.	.
Chr4	5326460	5331583	AT4TE22180	.	+	META1	Copia	LTR	5123	long	138	medium	2192786	chromoarm	185	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	5331980	5332208	AT4TE22185	.	-	ARNOLDY2	MuDR	DNA	228	short	288	high	2198306	chromoarm	71	no-CHH	no-CHH	.	.	.	.	.
Chr4	5332208	5332328	AT4TE22190	.	-	HELITRONY3	Helitron	RC	120	short	1399	high	2198534	chromoarm	299	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	5332328	5333572	AT4TE22195	.	+	ARNOLDY2	MuDR	DNA	1244	short	288	high	2198654	chromoarm	419	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5333572	5333989	AT4TE22200	.	+	HELITRONY3	Helitron	RC	417	short	1399	high	2199898	chromoarm	1663	no-CHH	no-CHH	.	.	.	.	.
Chr4	5333989	5334104	AT4TE22205	.	+	ATREP10D	Helitron	RC	115	short	1295	high	2200315	chromoarm	2080	no-CHH	no-CHH	.	.	.	.	.
Chr4	5334200	5334749	AT4TE22210	.	-	ATHILA4A	Gypsy	LTR	549	short	310	high	2200526	chromoarm	2291	no-CHH	no-CHH	.	.	.	.	.
Chr4	5334749	5335083	AT4TE22215	.	-	ATHILA4D_LTR	Gypsy	LTR	334	short	106	medium	2201075	chromoarm	2840	no-CHH	no-RdDM	.	.	.	.	.
Chr4	5335855	5337853	AT4TE22220	.	+	ATGP10	Gypsy	LTR	1998	short	165	medium	2202181	chromoarm	1232	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	5339249	5339412	AT4TE22225	.	-	ATHILA6A	Gypsy	LTR	163	short	247	high	2205575	chromoarm	0	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	5342388	5342646	AT4TE22235	.	-	ATDNA2T9C	MuDR	DNA	258	short	242	high	2208714	chromoarm	1179	no-CHH	no-CHH	.	.	.	.	.
Chr4	5342646	5342679	AT4TE22240	.	-	ATDNA2T9C	MuDR	DNA	33	tiny	242	high	2208972	chromoarm	1437	no-CHH	no-CHH	.	.	.	.	.
Chr4	5342856	5344050	AT4TE22245	.	-	VANDAL3	MuDR	DNA	1194	short	177	medium	2209182	chromoarm	1647	no-RdDM	no-CHH	.	.	.	.	.
Chr4	5344050	5344167	AT4TE22250	.	-	VANDALNX2	MuDR	DNA	117	short	37	low	2210376	chromoarm	2841	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5344167	5345366	AT4TE22255	.	-	ATDNA2T9C	MuDR	DNA	1199	short	242	high	2210493	chromoarm	2029	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5345366	5345493	AT4TE22260	.	-	VANDALNX2	MuDR	DNA	127	short	37	low	2211692	chromoarm	1902	no-CHH	no-CHH	.	.	.	.	.
Chr4	5345493	5345697	AT4TE22265	.	-	BRODYAGA2	MuDR	DNA	204	short	525	high	2211819	chromoarm	1698	no-CHH	no-CHH	.	.	.	.	.
Chr4	5345697	5347026	AT4TE22270	.	-	ATHILA4	Gypsy	LTR	1329	short	250	high	2212023	chromoarm	369	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5347026	5347046	AT4TE22275	.	-	ATHILA4A	Gypsy	LTR	20	tiny	310	high	2213352	chromoarm	349	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5347459	5347926	AT4TE22280	.	+	VANDAL3	MuDR	DNA	467	short	177	medium	2213785	chromoarm	0	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	5349974	5350567	AT4TE22290	.	+	VANDAL3	MuDR	DNA	593	short	177	medium	2216300	chromoarm	0	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	5351678	5351900	AT4TE22295	.	+	ATDNA2T9C	MuDR	DNA	222	short	242	high	2218004	chromoarm	1242	no-CHH	no-CHH	.	.	.	.	.
Chr4	5351914	5352509	AT4TE22300	.	-	ATHILA4A	Gypsy	LTR	595	short	310	high	2218240	chromoarm	1478	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	5352509	5352830	AT4TE22305	.	+	ATREP15	Helitron	RC	321	short	1003	high	2218835	chromoarm	2073	no-CHH	no-CHH	.	.	.	.	.
Chr4	5353399	5353447	AT4TE22310	.	+	HELITRONY1A	Helitron	RC	48	tiny	271	high	2219725	chromoarm	2963	no-CHH	no-CHH	.	.	.	.	.
Chr4	5353447	5354739	AT4TE22315	.	-	ATREP3	Helitron	RC	1292	short	1439	high	2219773	chromoarm	3011	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5354757	5355306	AT4TE22320	.	-	ATHATN7	HAT	DNA	550	short	71	medium	2221082	chromoarm	4320	.	.	.	.	.	.	.
Chr4	5355355	5355828	AT4TE22325	.	-	BRODYAGA1A	MuDR	DNA	473	short	586	high	2221681	chromoarm	4919	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5356128	5356291	AT4TE22330	.	-	ATHILA8A	Gypsy	LTR	163	short	97	medium	2222454	chromoarm	5692	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	5356291	5357537	AT4TE22335	.	+	ATHILA7A	Gypsy	LTR	1246	short	31	low	2222617	chromoarm	5855	PolIV-and-RDR6-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	5358173	5358396	AT4TE22340	.	+	ATMU2	MuDR	DNA	223	short	64	medium	2224499	chromoarm	7213	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr4	5359074	5359289	AT4TE22345	.	-	ATMU2	MuDR	DNA	215	short	64	medium	2225400	chromoarm	6320	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5359556	5360333	AT4TE22350	.	-	ATHPOGON3	Pogo	DNA	777	short	118	medium	2225882	chromoarm	5276	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5360333	5360365	AT4TE22355	.	-	ATHPOGON3	Pogo	DNA	32	tiny	118	medium	2226659	chromoarm	5244	no-RdDM	no-CHH	.	.	.	.	.
Chr4	5360718	5361032	AT4TE22360	.	+	ATDNAI27T9C	MuDR	DNA	314	short	108	medium	2227044	chromoarm	4577	no-RdDM	no-CHH	.	.	.	.	.
Chr4	5361032	5362413	AT4TE22365	.	-	ATHILA8A	Gypsy	LTR	1381	short	97	medium	2227358	chromoarm	3196	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	5363248	5363575	AT4TE22370	.	+	ATDNA12T3_2	.	DNA	327	short	660	high	2229574	chromoarm	2034	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5366131	5366204	AT4TE22380	.	-	RathE1_cons	.	RathE1_cons	73	tiny	213	high	2232457	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5368264	5368685	AT4TE22390	.	-	HELITRONY3	Helitron	RC	421	short	1399	high	2234590	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	5368685	5369485	AT4TE22395	.	-	ATHPOGON1	Pogo	DNA	800	short	174	medium	2235011	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5369485	5369689	AT4TE22400	.	+	ATREP4	Helitron	RC	204	short	832	high	2235811	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	5369689	5369720	AT4TE22405	.	-	HELITRONY1B	Helitron	RC	31	tiny	414	high	2236015	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	5369720	5369808	AT4TE22410	.	-	ATREP10B	Helitron	RC	88	tiny	491	high	2236046	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	5373005	5373672	AT4TE22420	.	-	ATREP15	Helitron	RC	667	short	1003	high	2239331	chromoarm	1904	no-CHH	no-CHH	.	.	.	.	.
Chr4	5373672	5373858	AT4TE22425	.	-	ATLINE1_6	L1	LINE	186	short	129	medium	2239998	chromoarm	2032	no-CHH	no-CHH	.	.	.	.	.
Chr4	5380846	5381031	AT4TE22460	.	+	ATHATN2	HAT	DNA	185	short	46	low	2247172	chromoarm	2644	no-CHH	no-CHH	.	.	.	.	.
Chr4	5382037	5382062	AT4TE22465	.	+	ARNOLDY2	MuDR	DNA	25	tiny	288	high	2248363	chromoarm	1967	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr4	5382062	5382083	AT4TE22470	.	-	ARNOLDY2	MuDR	DNA	21	tiny	288	high	2248388	chromoarm	1946	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5382083	5382218	AT4TE22475	.	-	HELITRONY3	Helitron	RC	135	short	1399	high	2248409	chromoarm	1811	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5382218	5383660	AT4TE22480	.	+	ARNOLDY2	MuDR	DNA	1442	short	288	high	2248544	chromoarm	369	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5383660	5383684	AT4TE22485	.	-	HELITRONY3	Helitron	RC	24	tiny	1399	high	2249986	chromoarm	345	no-CHH	no-CHH	.	.	.	.	.
Chr4	5391520	5391541	AT4TE22520	.	+	BRODYAGA2	MuDR	DNA	21	tiny	525	high	2257846	chromoarm	13	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	5391541	5391703	AT4TE22525	.	+	VANDAL8	MuDR	DNA	162	short	123	medium	2257867	chromoarm	34	no-CHH	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	5391706	5391880	AT4TE22530	.	-	ATREP2	Helitron	RC	175	short	164	medium	2258031	chromoarm	198	.	.	.	.	.	.	.
Chr4	5391880	5394344	AT4TE22535	.	+	HELITRONY3	Helitron	RC	2464	medium	1399	high	2258206	chromoarm	80	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5394344	5394404	AT4TE22540	.	+	ARNOLDY2	MuDR	DNA	60	tiny	288	high	2260670	chromoarm	20	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr4	5394404	5394979	AT4TE22545	.	-	ARNOLDY2	MuDR	DNA	575	short	288	high	2260730	chromoarm	0	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr4	5396634	5396707	AT4TE22550	.	-	ATHILA4A	Gypsy	LTR	73	tiny	310	high	2262960	chromoarm	1852	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	5396707	5397674	AT4TE22555	.	-	ATHILA4B_LTR	Gypsy	LTR	967	short	143	medium	2263033	chromoarm	1925	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	5397674	5398317	AT4TE22560	.	-	ATHILA4A	Gypsy	LTR	643	short	310	high	2264000	chromoarm	2892	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5398353	5398801	AT4TE22565	.	-	ATHILA4A	Gypsy	LTR	448	short	310	high	2264679	chromoarm	3571	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5398801	5402984	AT4TE22570	.	-	ATHILA4	Gypsy	LTR	4183	medium	250	high	2265127	chromoarm	1287	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	5407420	5407474	AT4TE22590	.	+	ATREP11	Helitron	RC	54	tiny	841	high	2273746	chromoarm	358	no-CHH	no-RdDM	.	.	.	.	.
Chr4	5407479	5407775	AT4TE22595	.	-	ATMUNX1	MuDR	DNA	296	short	155	medium	2273805	chromoarm	417	PolIV-and-RDR6-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	5407775	5414972	AT4TE22600	.	+	ATREP11	Helitron	RC	7197	long	841	high	2274101	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5408351	5409300	AT4TE22605	.	+	ATREP15	Helitron	RC	949	short	1003	high	2274677	chromoarm	1289	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5409300	5409325	AT4TE22610	.	+	ATREP10D	Helitron	RC	25	tiny	1295	high	2275626	chromoarm	1697	no-CHH	no-CHH	.	.	.	.	.
Chr4	5409325	5409352	AT4TE22615	.	+	ATREP9	Helitron	RC	27	tiny	201	high	2275651	chromoarm	1670	no-RdDM	no-CHH	.	.	.	.	.
Chr4	5409352	5410235	AT4TE22620	.	-	HELITRONY1D	Helitron	RC	883	short	756	high	2275678	chromoarm	787	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5416529	5416625	AT4TE22650	.	-	BRODYAGA1	MuDR	DNA	96	tiny	251	high	2282855	chromoarm	1261	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	5420845	5421137	AT4TE22670	.	+	ATREP15	Helitron	RC	293	short	1003	high	2287170	chromoarm	549	.	.	.	.	.	.	.
Chr4	5421754	5421892	AT4TE22675	.	+	ATREP15	Helitron	RC	138	short	1003	high	2288080	chromoarm	33	no-CHH	no-CHH	.	.	.	.	.
Chr4	5422305	5422341	AT4TE22680	.	-	ATDNAI27T9C	MuDR	DNA	36	tiny	108	medium	2288631	chromoarm	68	no-CHH	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	5422342	5422719	AT4TE22685	.	-	LIMPET1	MuDR	DNA	378	short	116	medium	2288667	chromoarm	104	.	.	LowExpressed	.	.	.	.
Chr4	5422719	5423353	AT4TE22690	.	-	LIMPET1	MuDR	DNA	634	short	116	medium	2289045	chromoarm	482	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5423420	5423687	AT4TE22695	.	-	ATDNAI27T9A	MuDR	DNA	267	short	116	medium	2289746	chromoarm	1183	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5428225	5428256	AT4TE22710	.	+	ATHPOGON2	Pogo	DNA	31	tiny	27	low	2294551	chromoarm	5503	no-CHH	no-CHH	.	.	.	.	.
Chr4	5428256	5428810	AT4TE22715	.	+	ATHPOGON1	Pogo	DNA	554	short	174	medium	2294582	chromoarm	4949	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5428810	5429018	AT4TE22720	.	+	ATREP17	MuDR	DNA	208	short	34	low	2295136	chromoarm	4741	no-CHH	no-CHH	.	.	.	.	.
Chr4	5430630	5431765	AT4TE22725	.	-	ATREP11	Helitron	RC	1135	short	841	high	2296956	chromoarm	1994	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5431782	5432261	AT4TE22730	.	+	ATHATN3	HAT	DNA	479	short	70	medium	2298108	chromoarm	1498	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5432261	5432361	AT4TE22735	.	-	ATTIRX1D	.	DNA	100	short	28	low	2298587	chromoarm	1398	no-CHH	no-CHH	.	.	.	.	.
Chr4	5432361	5432550	AT4TE22740	.	-	ATREP15	Helitron	RC	189	short	1003	high	2298687	chromoarm	1209	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5432560	5433348	AT4TE22745	.	-	ATHPOGON3	Pogo	DNA	788	short	118	medium	2298886	chromoarm	411	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5433348	5433553	AT4TE22750	.	+	ATREP1	Helitron	RC	205	short	498	high	2299674	chromoarm	206	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	5437216	5438404	AT4TE22760	.	+	ATREP10D	Helitron	RC	1188	short	1295	high	2303542	chromoarm	890	no-CHH	no-CHH	.	.	.	.	.
Chr4	5438404	5438741	AT4TE22765	.	+	BRODYAGA1A	MuDR	DNA	337	short	586	high	2304730	chromoarm	2078	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5438741	5438879	AT4TE22770	.	+	ATREP15	Helitron	RC	138	short	1003	high	2305067	chromoarm	2415	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5439884	5440334	AT4TE22775	.	+	ATCOPIA37	Copia	LTR	450	short	32	low	2306210	chromoarm	3558	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5441233	5441391	AT4TE22780	.	-	ATREP3	Helitron	RC	158	short	1439	high	2307559	chromoarm	2953	no-CHH	no-CHH	.	.	.	.	.
Chr4	5441399	5443569	AT4TE22785	.	-	ATREP5	Helitron	RC	2170	medium	624	high	2307725	chromoarm	775	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5443569	5443804	AT4TE22790	.	-	ATREP5	Helitron	RC	235	short	624	high	2309895	chromoarm	540	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	5443804	5443907	AT4TE22795	.	-	ATREP5	Helitron	RC	103	short	624	high	2310130	chromoarm	437	no-CHH	no-CHH	.	.	.	.	.
Chr4	5448397	5448758	AT4TE22810	.	+	HELITRONY3	Helitron	RC	361	short	1399	high	2314723	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	5448758	5448830	AT4TE22815	.	+	ATREP10D	Helitron	RC	72	tiny	1295	high	2315084	chromoarm	358	no-CHH	no-CHH	.	.	.	.	.
Chr4	5448830	5448902	AT4TE22820	.	-	BRODYAGA1A	MuDR	DNA	72	tiny	586	high	2315156	chromoarm	430	no-CHH	no-CHH	.	.	.	.	.
Chr4	5448902	5451095	AT4TE22825	.	-	ATREP10D	Helitron	RC	2193	medium	1295	high	2315228	chromoarm	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	5450181	5450299	AT4TE22830	.	+	ATTIRX1B	.	DNA	118	short	44	low	2316507	chromoarm	134	no-CHH	no-CHH	.	.	.	.	.
Chr4	5450299	5450435	AT4TE22835	.	+	ATREP9	Helitron	RC	136	short	201	high	2316625	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	5453747	5454180	AT4TE22845	.	+	ATREP3	Helitron	RC	433	short	1439	high	2320073	chromoarm	564	no-CHH	no-CHH	.	.	.	.	.
Chr4	5456347	5457169	AT4TE22855	.	-	ATREP5	Helitron	RC	822	short	624	high	2322673	chromoarm	372	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5459265	5459321	AT4TE22865	.	-	ATENSPM2	En-Spm	DNA	56	tiny	114	medium	2325591	chromoarm	2868	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5459321	5459756	AT4TE22870	.	+	BRODYAGA1	MuDR	DNA	435	short	251	high	2325647	chromoarm	2433	no-CHH	no-CHH	.	.	.	.	.
Chr4	5460849	5461010	AT4TE22875	.	+	ATHAT1	HAT	DNA	161	short	105	medium	2327175	chromoarm	1179	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	5461124	5461256	AT4TE22880	.	-	ATHPOGO	Pogo	DNA	133	short	25	low	2327449	chromoarm	933	.	.	.	.	.	.	.
Chr4	5462623	5463117	AT4TE22885	.	+	ATMU10	MuDR	DNA	494	short	87	medium	2328949	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	5466731	5467274	AT4TE22895	.	-	ATREP10A	Helitron	RC	543	short	279	high	2333057	chromoarm	96	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	5467274	5467325	AT4TE22900	.	-	ATREP3	Helitron	RC	51	tiny	1439	high	2333600	chromoarm	639	no-CHH	no-RdDM	.	.	.	.	.
Chr4	5468023	5468717	AT4TE22905	.	+	ATDNA2T9C	MuDR	DNA	694	short	242	high	2334349	chromoarm	627	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	5470885	5470910	AT4TE22915	.	-	ATDNA2T9C	MuDR	DNA	26	tiny	242	high	2337210	chromoarm	418	.	.	.	.	.	.	.
Chr4	5470910	5472397	AT4TE22920	.	-	VANDALNX2	MuDR	DNA	1487	short	37	low	2337236	chromoarm	444	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5472411	5474036	AT4TE22925	.	+	ATREP10D	Helitron	RC	1625	short	1295	high	2338737	chromoarm	1945	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5474988	5475117	AT4TE22930	.	+	TNAT1A	.	DNA	129	short	162	medium	2341314	chromoarm	4522	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5475879	5477918	AT4TE22935	.	-	Unassigned	.	Unassigned	2039	medium	.	low	2342205	chromoarm	5413	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5478167	5478266	AT4TE22940	.	-	ATCOPIA54	Copia	LTR	99	tiny	18	low	2344493	chromoarm	7701	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5478375	5478894	AT4TE22945	.	-	ATREP11A	Helitron	RC	519	short	95	medium	2344701	chromoarm	7909	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5480521	5480594	AT4TE22950	.	-	ATENSPM5	En-Spm	DNA	73	tiny	111	medium	2346847	chromoarm	10055	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	5480594	5481908	AT4TE22955	.	-	ATENSPM9	En-Spm	DNA	1314	short	97	medium	2346920	chromoarm	10128	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	5485112	5485145	AT4TE22965	.	-	VANDAL8	MuDR	DNA	33	tiny	123	medium	2351438	chromoarm	14646	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5485145	5494752	AT4TE22970	.	-	VANDAL8	MuDR	DNA	9607	long	123	medium	2351471	chromoarm	5727	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	5485372,5490269,5494610	5489152,5489283,5494257	+,-,-	transcript_id-"c539b3c0-6ad9-44bb-beb1-cdaf1cc9d8d9|3",transcript_id-"5e613cc8-e98e-45b3-8fe8-576b09f7a87d|3",transcript_id-"027dba22-479e-46a7-8ff8-b746ee3f9170|18"
Chr4	5490950	5491270	AT4TE22975	.	-	VANDAL8	MuDR	DNA	321	short	123	medium	2357275	chromoarm	9209	.	.	.	.	.	.	.
Chr4	5496217	5496482	AT4TE23000	.	+	ATREP16	MuDR	DNA	265	short	47	low	2362543	chromoarm	3997	no-CHH	no-CHH	.	.	.	.	.
Chr4	5498513	5499242	AT4TE23010	.	+	HELITRONY3	Helitron	RC	729	short	1399	high	2364839	chromoarm	1237	no-CHH	no-CHH	.	.	.	.	.
Chr4	5502934	5503612	AT4TE23020	.	+	HELITRONY2	Helitron	RC	678	short	198	medium	2369260	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	5503612	5503655	AT4TE23025	.	+	ATHPOGON1	Pogo	DNA	43	tiny	174	medium	2369938	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	5503655	5503688	AT4TE23030	.	-	ATREP11	Helitron	RC	33	tiny	841	high	2369981	chromoarm	0	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr4	5504352	5504625	AT4TE23035	.	-	ATIS112A	Harbinger	DNA	273	short	173	medium	2370678	chromoarm	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	5505090	5505391	AT4TE23040	.	+	ATTIRX1A	.	DNA	301	short	63	medium	2371416	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5506030	5506986	AT4TE23045	.	+	ATREP10D	Helitron	RC	956	short	1295	high	2372356	chromoarm	11	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	5515951	5516030	AT4TE23090	.	-	ATREP5	Helitron	RC	79	tiny	624	high	2382277	chromoarm	1777	no-RdDM	no-CHH	.	.	.	.	.
Chr4	5516030	5516826	AT4TE23095	.	-	HELITRONY1E	Helitron	RC	796	short	447	high	2382356	chromoarm	1856	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	5516826	5516921	AT4TE23100	.	-	ATREP7	Helitron	RC	95	tiny	164	medium	2383152	chromoarm	2652	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5516924	5518901	AT4TE23105	.	-	ATREP8	Helitron	RC	1977	short	75	medium	2383250	chromoarm	2750	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5517832	5518722	AT4TE23110	.	+	AT9MU1	MuDR	DNA	890	short	10	low	2384158	chromoarm	3658	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5517944	5517972	AT4TE23115	.	-	AT9MU1	MuDR	DNA	29	tiny	10	low	2384269	chromoarm	3769	.	.	.	.	.	.	.
Chr4	5520206	5536230	AT4TE23125	.	-	VANDAL3	MuDR	DNA	16024	long	177	medium	2386532	chromoarm	534	no-RdDM	no-RdDM	ExpressedAndAnnotated	5520980,5525740	5523229,5525994	+,+	transcript_id-"e1fe7f60-7b95-41fc-bf08-200748d6ef54|6",transcript_id-"03cbd2db-47d0-4192-9fb0-bd39e0d5a033|3"
Chr4	5528299	5529340	AT4TE23130	.	-	VANDAL3	MuDR	DNA	1041	short	177	medium	2394625	chromoarm	7424	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	5536231	5536364	AT4TE23170	.	-	VANDAL3	MuDR	DNA	134	short	177	medium	2402556	chromoarm	400	.	.	.	.	.	.	.
Chr4	5538894	5541879	AT4TE23180	.	-	ATREP3	Helitron	RC	2985	medium	1439	high	2405220	chromoarm	684	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5541887	5542066	AT4TE23185	.	-	HELITRONY1B	Helitron	RC	180	short	414	high	2408212	chromoarm	3676	.	.	.	.	.	.	.
Chr4	5543034	5543060	AT4TE23190	.	-	ATMU3	MuDR	DNA	27	tiny	15	low	2409359	chromoarm	4823	.	.	LowExpressed	.	.	.	.
Chr4	5543061	5544704	AT4TE23195	.	-	ATMU5	MuDR	DNA	1644	short	24	low	2409386	chromoarm	4850	.	.	LowExpressed	.	.	.	.
Chr4	5544704	5544861	AT4TE23200	.	-	ATMU11	MuDR	DNA	157	short	20	low	2411030	chromoarm	5701	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr4	5545533	5546719	AT4TE23205	.	-	ATREP4	Helitron	RC	1186	short	832	high	2411859	chromoarm	3843	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5546719	5546817	AT4TE23210	.	-	ATREP4	Helitron	RC	98	tiny	832	high	2413045	chromoarm	3745	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5546817	5549476	AT4TE23215	.	+	ATREP10D	Helitron	RC	2659	medium	1295	high	2413143	chromoarm	1086	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	5549476	5550177	AT4TE23220	.	-	HELITRONY1A	Helitron	RC	701	short	271	high	2415802	chromoarm	385	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	5550177	5550213	AT4TE23225	.	-	ATREP10D	Helitron	RC	36	tiny	1295	high	2416503	chromoarm	349	no-CHH	no-CHH	.	.	.	.	.
Chr4	5550213	5550253	AT4TE23230	.	+	HELITRONY1A	Helitron	RC	40	tiny	271	high	2416539	chromoarm	309	no-RdDM	no-CHH	.	.	.	.	.
Chr4	5553120	5553155	AT4TE23240	.	-	ATREP3	Helitron	RC	35	tiny	1439	high	2419446	chromoarm	407	no-CHH	no-CHH	.	.	.	.	.
Chr4	5553155	5553883	AT4TE23245	.	-	BRODYAGA1A	MuDR	DNA	728	short	586	high	2419481	chromoarm	442	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	5553883	5554038	AT4TE23250	.	-	ATREP3	Helitron	RC	155	short	1439	high	2420209	chromoarm	1170	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr4	5554038	5554093	AT4TE23255	.	+	BRODYAGA1A	MuDR	DNA	55	tiny	586	high	2420364	chromoarm	1325	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	5554355	5554534	AT4TE23260	.	-	ATHILA5	Gypsy	LTR	179	short	131	medium	2420681	chromoarm	1127	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5556934	5557099	AT4TE23270	.	+	BRODYAGA1	MuDR	DNA	166	short	251	high	2423259	chromoarm	579	.	.	.	.	.	.	.
Chr4	5557207	5557345	AT4TE23275	.	+	BRODYAGA1	MuDR	DNA	138	short	251	high	2423533	chromoarm	853	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5557807	5557953	AT4TE23280	.	+	SIMPLEGUY1	Harbinger	DNA	147	short	116	medium	2424132	chromoarm	1452	.	.	.	.	.	.	.
Chr4	5557953	5558966	AT4TE23285	.	+	SIMPLEHAT2	HAT	DNA	1013	short	73	medium	2424279	chromoarm	1599	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5560078	5560346	AT4TE23290	.	-	ATLINE1A	L1	LINE	268	short	289	high	2426404	chromoarm	3724	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	5561068	5561137	AT4TE23295	.	-	HELITRONY1D	Helitron	RC	69	tiny	756	high	2427394	chromoarm	4714	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5561137	5561744	AT4TE23300	.	-	BRODYAGA1	MuDR	DNA	607	short	251	high	2427463	chromoarm	4253	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5561744	5561766	AT4TE23305	.	-	HELITRONY1D	Helitron	RC	22	tiny	756	high	2428070	chromoarm	4231	no-CHH	no-CHH	.	.	.	.	.
Chr4	5561766	5562477	AT4TE23310	.	-	ATHATN10	HAT	DNA	711	short	48	low	2428092	chromoarm	3520	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5567759	5567793	AT4TE23340	.	-	VANDAL21	MuDR	DNA	35	tiny	64	medium	2434084	chromoarm	472	.	.	LowExpressed	.	.	.	.
Chr4	5567793	5575599	AT4TE23345	.	-	VANDAL21	MuDR	DNA	7806	long	64	medium	2434119	chromoarm	507	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	5571387,5571616,5571439,5575432	5570763,5570816,5570878,5572296	-,-,-,-	transcript_id-"ec4c8403-815f-4899-a9ae-831e619d04a5|3",transcript_id-"4f70ab57-ffe4-4732-8248-a2cda2cf3edc|117",transcript_id-"1daf1f0a-5d02-469c-aad1-5b961f077bf6|5",transcript_id-"b9b5e0e3-0e18-4a54-b0b1-f9134cfeb946|6"
Chr4	5570311	5570535	AT4TE23350	.	-	VANDAL17	MuDR	DNA	224	short	178	medium	2436637	chromoarm	3025	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	5577215	5577306	AT4TE23390	.	+	ATCOPIA1	Copia	LTR	91	tiny	11	low	2443541	chromoarm	83	no-CHH	no-CHH	.	.	.	.	.
Chr4	5579270	5579516	AT4TE23400	.	-	VANDAL6	MuDR	DNA	246	short	89	medium	2445596	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	5581566	5586563	AT4TE23410	.	+	ATGP2N	Gypsy	LTR	4997	medium	54	medium	2447892	chromoarm	0	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	5588279	5588386	AT4TE23415	.	-	VANDAL18NA	MuDR	DNA	107	short	24	low	2454605	chromoarm	0	no-RdDM	no-CHH	.	.	.	.	.
Chr4	5589735	5590541	AT4TE23420	.	-	ATGP8	Gypsy	LTR	806	short	92	medium	2456061	chromoarm	0	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5591776	5592872	AT4TE23425	.	+	ATCOPIA13	Copia	LTR	1096	short	35	low	2458102	chromoarm	643	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5592874	5596252	AT4TE23430	.	+	ATCOPIA75	Copia	LTR	3378	medium	20	low	2459200	chromoarm	1741	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5596252	5596417	AT4TE23435	.	+	ATCOPIA96	Copia	LTR	165	short	16	low	2462578	chromoarm	1841	no-RdDM	no-CHH	.	.	.	.	.
Chr4	5596754	5596787	AT4TE23440	.	+	ATREP5	Helitron	RC	33	tiny	624	high	2463080	chromoarm	1471	no-CHH	no-CHH	.	.	.	.	.
Chr4	5596787	5597341	AT4TE23445	.	-	ATREP10B	Helitron	RC	554	short	491	high	2463113	chromoarm	917	no-RdDM	no-CHH	.	.	.	.	.
Chr4	5597341	5597901	AT4TE23450	.	-	ATREP6	Helitron	RC	560	short	181	medium	2463667	chromoarm	357	no-CHH	no-CHH	.	.	.	.	.
Chr4	5600277	5600519	AT4TE23460	.	+	ATREP10D	Helitron	RC	242	short	1295	high	2466603	chromoarm	15	no-CHH	no-CHH	.	.	.	.	.
Chr4	5600519	5601251	AT4TE23465	.	+	ATHPOGON1	Pogo	DNA	732	short	174	medium	2466845	chromoarm	257	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	5601251	5601604	AT4TE23470	.	-	HELITRONY1A	Helitron	RC	353	short	271	high	2467577	chromoarm	989	no-CHH	no-CHH	.	.	.	.	.
Chr4	5602570	5603138	AT4TE23475	.	+	ATLINE1A	L1	LINE	568	short	289	high	2468896	chromoarm	1014	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5604323	5604458	AT4TE23480	.	+	ATREP6	Helitron	RC	135	short	181	medium	2470649	chromoarm	0	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	5604458	5605878	AT4TE23485	.	+	ATREP7	Helitron	RC	1420	short	164	medium	2470784	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5605878	5606538	AT4TE23490	.	+	ATREP3	Helitron	RC	660	short	1439	high	2472204	chromoarm	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	5611199	5613631	AT4TE23520	.	-	HELITRONY3	Helitron	RC	2432	medium	1399	high	2477525	chromoarm	81	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5613631	5613876	AT4TE23525	.	-	HELITRONY3	Helitron	RC	245	short	1399	high	2479957	chromoarm	257	PolIV-and-RDR6-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	5617957	5618006	AT4TE23540	.	+	BRODYAGA1	MuDR	DNA	50	tiny	251	high	2484282	chromoarm	94	.	.	LowExpressed	.	.	.	.
Chr4	5618041	5619125	AT4TE23545	.	+	BRODYAGA1A	MuDR	DNA	1084	short	586	high	2484367	chromoarm	179	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	5619125	5619162	AT4TE23550	.	-	BRODYAGA1A	MuDR	DNA	37	tiny	586	high	2485451	chromoarm	1263	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5619162	5619331	AT4TE23555	.	-	BRODYAGA1	MuDR	DNA	169	short	251	high	2485488	chromoarm	1300	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5619331	5620939	AT4TE23560	.	-	VANDALNX1	MuDR	DNA	1608	short	14	low	2485657	chromoarm	1469	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5620939	5621024	AT4TE23565	.	+	ATREP9	Helitron	RC	85	tiny	201	high	2487265	chromoarm	3077	no-RdDM	no-CHH	.	.	.	.	.
Chr4	5621024	5621708	AT4TE23570	.	-	HELITRONY1D	Helitron	RC	684	short	756	high	2487350	chromoarm	3162	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	5621793	5627464	AT4TE23575	.	+	ATLINE1_1	L1	LINE	5671	long	61	medium	2488119	chromoarm	3833	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5630038	5630310	AT4TE23585	.	+	VANDAL17	MuDR	DNA	272	short	178	medium	2496364	chromoarm	987	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5630353	5631073	AT4TE23590	.	+	ATN9_1	MuDR	DNA	720	short	65	medium	2496679	chromoarm	224	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	5634131	5634685	AT4TE23600	.	-	ATREP10A	Helitron	RC	554	short	279	high	2500457	chromoarm	352	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5635400	5635771	AT4TE23605	.	-	ATMUNX1	MuDR	DNA	371	short	155	medium	2501726	chromoarm	921	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	5636318	5636341	AT4TE23610	.	+	ATLINE1_3A	L1	LINE	23	tiny	160	medium	2502644	chromoarm	351	no-CHH	no-CHH	.	.	.	.	.
Chr4	5636341	5636533	AT4TE23615	.	+	ATLINE1_3A	L1	LINE	192	short	160	medium	2502667	chromoarm	159	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	5636994	5637451	AT4TE23620	.	-	ATREP19	.	DNA	457	short	189	medium	2503320	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	5640627	5641237	AT4TE23630	.	-	HELITRONY3	Helitron	RC	610	short	1399	high	2506953	chromoarm	131	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	5643628	5643856	AT4TE23640	.	-	BRODYAGA1A	MuDR	DNA	228	short	586	high	2509954	chromoarm	2797	no-CHH	no-CHH	.	.	.	.	.
Chr4	5644442	5645105	AT4TE23645	.	+	ATLINE1_1	L1	LINE	663	short	61	medium	2510768	chromoarm	1548	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	5645108	5645247	AT4TE23650	.	-	HELITRONY3	Helitron	RC	139	short	1399	high	2511434	chromoarm	1406	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5645248	5646237	AT4TE23655	.	+	HELITRONY3	Helitron	RC	990	short	1399	high	2511573	chromoarm	416	.	.	.	.	.	.	.
Chr4	5649124	5649904	AT4TE23665	.	+	ATREP10B	Helitron	RC	780	short	491	high	2515450	chromoarm	431	no-CHH	no-CHH	.	.	.	.	.
Chr4	5649904	5649955	AT4TE23670	.	-	ATDNA2T9C	MuDR	DNA	51	tiny	242	high	2516230	chromoarm	1211	no-CHH	no-CHH	.	.	.	.	.
Chr4	5651103	5651509	AT4TE23675	.	+	ATENSPM2	En-Spm	DNA	406	short	114	medium	2517429	chromoarm	2410	no-RdDM	no-CHH	.	.	.	.	.
Chr4	5651509	5651892	AT4TE23680	.	+	ATGP5	Gypsy	LTR	383	short	86	medium	2517835	chromoarm	2816	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	5651892	5652023	AT4TE23685	.	+	ATHILA4B_LTR	Gypsy	LTR	131	short	143	medium	2518218	chromoarm	3199	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	5652023	5653024	AT4TE23690	.	+	ATHILA4	Gypsy	LTR	1001	short	250	high	2518349	chromoarm	3330	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5653035	5653091	AT4TE23695	.	+	ATHILA4A	Gypsy	LTR	56	tiny	310	high	2519361	chromoarm	4184	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5653091	5655216	AT4TE23700	.	+	ATHILA4C	Gypsy	LTR	2125	medium	206	high	2519417	chromoarm	2059	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	5655231	5656686	AT4TE23705	.	+	ATGP5	Gypsy	LTR	1455	short	86	medium	2521557	chromoarm	589	no-RdDM	no-CHH	.	.	.	.	.
Chr4	5656686	5656764	AT4TE23710	.	+	ATGP5	Gypsy	LTR	78	tiny	86	medium	2523012	chromoarm	511	no-RdDM	no-CHH	.	.	.	.	.
Chr4	5657046	5657498	AT4TE23715	.	-	ATREP15	Helitron	RC	452	short	1003	high	2523372	chromoarm	0	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5657498	5658427	AT4TE23720	.	-	HELITRONY3	Helitron	RC	929	short	1399	high	2523824	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5658427	5658472	AT4TE23725	.	+	ARNOLDY1	MuDR	DNA	45	tiny	237	high	2524753	chromoarm	762	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5662151	5664053	AT4TE23735	.	+	ATHILA4A	Gypsy	LTR	1902	short	310	high	2528477	chromoarm	1506	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr4	5664053	5664089	AT4TE23740	.	+	ATHILA4C	Gypsy	LTR	36	tiny	206	high	2530379	chromoarm	3408	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	5664089	5664463	AT4TE23745	.	-	ATGP1	Gypsy	LTR	374	short	144	medium	2530415	chromoarm	3444	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	5664463	5664682	AT4TE23750	.	+	ATHILA4C	Gypsy	LTR	219	short	206	high	2530789	chromoarm	3818	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5664682	5667847	AT4TE23755	.	+	ATHILA4A	Gypsy	LTR	3165	medium	310	high	2531008	chromoarm	759	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	5667847	5667871	AT4TE23760	.	+	ATHILA4A	Gypsy	LTR	24	tiny	310	high	2534173	chromoarm	735	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	5669702	5671168	AT4TE23765	.	-	ARNOLDY1	MuDR	DNA	1466	short	237	high	2536028	chromoarm	655	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5671168	5671240	AT4TE23770	.	-	ARNOLDY1	MuDR	DNA	72	tiny	237	high	2537494	chromoarm	2035	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5671240	5672269	AT4TE23775	.	+	HELITRONY3	Helitron	RC	1029	short	1399	high	2537566	chromoarm	1006	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5673995	5676613	AT4TE23780	.	+	ATREP10D	Helitron	RC	2618	medium	1295	high	2540321	chromoarm	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	5678221	5680071	AT4TE23785	.	-	HELITRONY3	Helitron	RC	1850	short	1399	high	2544547	chromoarm	493	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5680071	5680789	AT4TE23790	.	+	ATHPOGON3	Pogo	DNA	718	short	118	medium	2546397	chromoarm	2343	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5680789	5681037	AT4TE23795	.	-	ATREP5	Helitron	RC	248	short	624	high	2547115	chromoarm	2142	no-CHH	no-CHH	.	.	.	.	.
Chr4	5681037	5681629	AT4TE23800	.	+	HELITRONY2	Helitron	RC	592	short	198	medium	2547363	chromoarm	1550	no-RdDM	no-CHH	.	.	.	.	.
Chr4	5681629	5681670	AT4TE23805	.	+	ATREP19	.	DNA	41	tiny	189	medium	2547955	chromoarm	1509	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	5681670	5681765	AT4TE23810	.	-	HELITRONY3	Helitron	RC	95	tiny	1399	high	2547996	chromoarm	1414	no-RdDM	no-CHH	.	.	.	.	.
Chr4	5681774	5682692	AT4TE23815	.	+	AT9NMU1	MuDR	DNA	918	short	45	low	2548100	chromoarm	487	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	5682692	5682813	AT4TE23820	.	-	AT9NMU1	MuDR	DNA	121	short	45	low	2549018	chromoarm	366	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	5683900	5697847	AT4TE23825	.	-	VANDAL2	MuDR	DNA	13947	long	43	low	2550226	chromoarm	0	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	5689612,5693683	5690452,5692473	+,-	transcript_id-"11d2ab3f-e249-42f3-a04e-6d4d58dbe87b|5",transcript_id-"0c4a3b8e-036e-4fd9-aadc-66927cd4802f|33"
Chr4	5698808	5698938	AT4TE23830	.	+	RathE1_cons	.	RathE1_cons	131	short	213	high	2565133	chromoarm	192	.	.	.	.	.	.	.
Chr4	5701472	5702468	AT4TE23840	.	+	ATREP10D	Helitron	RC	996	short	1295	high	2567798	chromoarm	1030	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5702468	5703239	AT4TE23845	.	-	ATHPOGON3	Pogo	DNA	771	short	118	medium	2568794	chromoarm	259	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5703239	5703373	AT4TE23850	.	-	BRODYAGA1	MuDR	DNA	134	short	251	high	2569565	chromoarm	125	no-CHH	no-CHH	.	.	.	.	.
Chr4	5705347	5705388	AT4TE23860	.	-	HELITRONY1E	Helitron	RC	41	tiny	447	high	2571673	chromoarm	167	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	5705389	5706000	AT4TE23865	.	+	ATHPOGON1	Pogo	DNA	611	short	174	medium	2571715	chromoarm	209	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5706000	5706078	AT4TE23870	.	-	ATREP10D	Helitron	RC	78	tiny	1295	high	2572326	chromoarm	820	no-CHH	no-CHH	.	.	.	.	.
Chr4	5706078	5708518	AT4TE23875	.	+	ATREP9	Helitron	RC	2440	medium	201	high	2572404	chromoarm	898	no-CHH	no-CHH	.	.	.	.	.
Chr4	5708820	5708857	AT4TE23880	.	-	ATDNA2T9B	MuDR	DNA	37	tiny	26	low	2575146	chromoarm	3531	no-CHH	no-CHH	.	.	.	.	.
Chr4	5708857	5709508	AT4TE23885	.	+	HELITRONY3	Helitron	RC	651	short	1399	high	2575183	chromoarm	2880	no-CHH	no-CHH	.	.	.	.	.
Chr4	5718642	5718711	AT4TE23930	.	-	HELITRON2	Helitron	RC	69	tiny	194	medium	2584968	chromoarm	5395	no-CHH	no-CHH	.	.	.	.	.
Chr4	5718711	5718738	AT4TE23935	.	-	HELITRONY1A	Helitron	RC	27	tiny	271	high	2585037	chromoarm	5464	no-CHH	no-CHH	.	.	.	.	.
Chr4	5718738	5722678	AT4TE23940	.	-	ATREP3	Helitron	RC	3940	medium	1439	high	2585064	chromoarm	1581	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	5719394	5719677	AT4TE23945	.	-	ATREP15	Helitron	RC	283	short	1003	high	2585720	chromoarm	4582	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	5719678	5719761	AT4TE23950	.	+	HELITRONY3	Helitron	RC	84	tiny	1399	high	2586003	chromoarm	4498	.	.	LowExpressed	.	.	.	.
Chr4	5719761	5721876	AT4TE23955	.	-	ATREP4	Helitron	RC	2115	medium	832	high	2586087	chromoarm	2383	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	5721876	5722248	AT4TE23960	.	-	HELITRONY1B	Helitron	RC	372	short	414	high	2588202	chromoarm	2011	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5727324	5727765	AT4TE23990	.	-	ATGP1	Gypsy	LTR	442	short	144	medium	2593649	chromoarm	418	.	.	.	.	.	.	.
Chr4	5727795	5728023	AT4TE23995	.	+	ATMU3	MuDR	DNA	228	short	15	low	2594121	chromoarm	890	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5728110	5728146	AT4TE24000	.	-	BRODYAGA1	MuDR	DNA	36	tiny	251	high	2594436	chromoarm	1205	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5728146	5728459	AT4TE24005	.	+	ATREP5	Helitron	RC	313	short	624	high	2594472	chromoarm	1051	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5728459	5728509	AT4TE24010	.	-	ATREP10C	Helitron	RC	50	tiny	123	medium	2594785	chromoarm	1001	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	5728509	5729066	AT4TE24015	.	+	HELITRON4	Helitron	RC	557	short	199	medium	2594835	chromoarm	444	no-CHH	no-CHH	.	.	.	.	.
Chr4	5729066	5729208	AT4TE24020	.	+	ATREP15	Helitron	RC	142	short	1003	high	2595392	chromoarm	302	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	5732658	5732979	AT4TE24030	.	+	ATCOPIA4	Copia	LTR	321	short	11	low	2598984	chromoarm	485	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	5733654	5733699	AT4TE24035	.	+	HELITRONY1A	Helitron	RC	45	tiny	271	high	2599980	chromoarm	1481	no-RdDM	no-CHH	.	.	.	.	.
Chr4	5733699	5733754	AT4TE24040	.	+	ATREP4	Helitron	RC	55	tiny	832	high	2600025	chromoarm	1526	no-CHH	no-CHH	.	.	.	.	.
Chr4	5733754	5734892	AT4TE24045	.	+	ATREP10D	Helitron	RC	1138	short	1295	high	2600080	chromoarm	1581	no-CHH	no-CHH	.	.	.	.	.
Chr4	5735505	5735797	AT4TE24050	.	+	ATCOPIA45	Copia	LTR	292	short	20	low	2601831	chromoarm	3210	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	5737701	5738710	AT4TE24060	.	+	ATREP15	Helitron	RC	1009	short	1003	high	2604027	chromoarm	297	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	5738715	5738748	AT4TE24065	.	+	BRODYAGA2	MuDR	DNA	33	tiny	525	high	2605041	chromoarm	259	no-CHH	no-CHH	.	.	.	.	.
Chr4	5739187	5739489	AT4TE24070	.	-	HELITRONY3	Helitron	RC	302	short	1399	high	2605513	chromoarm	36	no-CHH	no-CHH	.	.	.	.	.
Chr4	5739489	5740050	AT4TE24075	.	+	ATREP11	Helitron	RC	561	short	841	high	2605815	chromoarm	327	no-CHH	no-CHH	.	.	.	.	.
Chr4	5742311	5742545	AT4TE24085	.	+	BRODYAGA1	MuDR	DNA	234	short	251	high	2608637	chromoarm	989	no-CHH	no-CHH	.	.	.	.	.
Chr4	5742601	5743316	AT4TE24090	.	-	ATCOPIA70	Copia	LTR	715	short	8	low	2608927	chromoarm	1279	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	5743335	5743548	AT4TE24095	.	+	HELITRON1	Helitron	RC	213	short	130	medium	2609661	chromoarm	2013	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	5743653	5744763	AT4TE24100	.	+	HELITRONY3	Helitron	RC	1110	short	1399	high	2609979	chromoarm	1562	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5744782	5745718	AT4TE24105	.	-	ATREP10D	Helitron	RC	936	short	1295	high	2611108	chromoarm	607	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5749317	5749505	AT4TE24115	.	-	META1	Copia	LTR	188	short	138	medium	2615643	chromoarm	1323	no-CHH	no-CHH	.	.	.	.	.
Chr4	5749524	5749982	AT4TE24120	.	-	ROMANIAT5	Copia	LTR	458	short	49	low	2615850	chromoarm	1530	no-CHH	no-CHH	.	.	.	.	.
Chr4	5749982	5750273	AT4TE24125	.	+	ATDNA2T9C	MuDR	DNA	291	short	242	high	2616308	chromoarm	1744	no-CHH	no-CHH	.	.	.	.	.
Chr4	5753210	5754192	AT4TE24135	.	-	VANDAL4	MuDR	DNA	982	short	102	medium	2619536	chromoarm	1082	no-RdDM	no-RdDM	ExpressedAndAnnotated	5752185	5753743	+	transcript_id-"0fd77c49-19a3-4540-b131-695878562c51|3"
Chr4	5762054	5762282	AT4TE24170	.	+	HELITRONY3	Helitron	RC	228	short	1399	high	2628380	chromoarm	1946	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5762480	5762594	AT4TE24175	.	-	ARNOLDY1	MuDR	DNA	114	short	237	high	2628806	chromoarm	2186	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	5762594	5763103	AT4TE24180	.	+	ATREP10D	Helitron	RC	509	short	1295	high	2628920	chromoarm	1677	no-CHH	no-CHH	.	.	.	.	.
Chr4	5763103	5764156	AT4TE24185	.	-	ATREP4	Helitron	RC	1053	short	832	high	2629429	chromoarm	624	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	5764161	5764480	AT4TE24190	.	+	ATREP10D	Helitron	RC	319	short	1295	high	2630487	chromoarm	300	no-CHH	no-CHH	.	.	.	.	.
Chr4	5771968	5773031	AT4TE24230	.	-	ATLINE1_1	L1	LINE	1063	short	61	medium	2638294	chromoarm	1472	PolIV-and-RDR6-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	5773031	5773315	AT4TE24235	.	+	ATREP3	Helitron	RC	284	short	1439	high	2639357	chromoarm	2071	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5779534	5779760	AT4TE24260	.	+	ATMU1	MuDR	DNA	226	short	59	medium	2645860	chromoarm	196	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr4	5780039	5780175	AT4TE24265	.	+	ATMU2	MuDR	DNA	136	short	64	medium	2646365	chromoarm	294	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr4	5782351	5782383	AT4TE24275	.	-	ATTIRX1C	.	DNA	32	tiny	39	low	2648677	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	5782383	5782761	AT4TE24280	.	-	ATTIRX1B	.	DNA	378	short	44	low	2648709	chromoarm	0	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	5783469	5783739	AT4TE24285	.	+	ATHATN4	HAT	DNA	270	short	56	medium	2649795	chromoarm	31	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	5789086	5789226	AT4TE24310	.	+	ATLINE1A	L1	LINE	140	short	289	high	2655412	chromoarm	247	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5790310	5790403	AT4TE24315	.	+	TAG2	HAT	DNA	93	tiny	86	medium	2656636	chromoarm	1471	no-CHH	DCL3-RdDM	.	.	.	.	.
Chr4	5790750	5790778	AT4TE24320	.	+	BOMZH2	MuDR	DNA	28	tiny	47	low	2657076	chromoarm	1470	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5790778	5791870	AT4TE24325	.	+	BOMZH1	MuDR	DNA	1092	short	28	low	2657104	chromoarm	378	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5791883	5791910	AT4TE24330	.	-	ATMU6	MuDR	DNA	27	tiny	26	low	2658209	chromoarm	338	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5792816	5792971	AT4TE24335	.	+	RathE1_cons	.	RathE1_cons	155	short	213	high	2659142	chromoarm	184	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	5794054	5794385	AT4TE24340	.	+	ATLINE1_5	L1	LINE	331	short	91	medium	2660380	chromoarm	689	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5801378	5801690	AT4TE24380	.	-	ATREP15	Helitron	RC	312	short	1003	high	2667704	chromoarm	617	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr4	5801690	5802273	AT4TE24385	.	-	HELITRON3	Helitron	RC	583	short	53	medium	2668016	chromoarm	34	no-CHH	no-CHH	.	.	.	.	.
Chr4	5806781	5806991	AT4TE24400	.	+	TA11	L1	LINE	210	short	157	medium	2673107	chromoarm	328	no-CHH	no-CHH	.	.	.	.	.
Chr4	5807657	5808126	AT4TE24405	.	-	BRODYAGA1A	MuDR	DNA	469	short	586	high	2673983	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	5808126	5808147	AT4TE24410	.	-	BRODYAGA2	MuDR	DNA	21	tiny	525	high	2674452	chromoarm	456	no-CHH	no-CHH	.	.	.	.	.
Chr4	5808147	5808168	AT4TE24415	.	+	BRODYAGA1	MuDR	DNA	21	tiny	251	high	2674473	chromoarm	477	no-CHH	no-CHH	.	.	.	.	.
Chr4	5809017	5809134	AT4TE24420	.	-	ATHILA8A	Gypsy	LTR	117	short	97	medium	2675343	chromoarm	1347	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5809271	5811071	AT4TE24425	.	+	HELITRONY3	Helitron	RC	1800	short	1399	high	2675597	chromoarm	184	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	5822425	5827300	AT4TE24480	.	+	ATCOPIA26	Copia	LTR	4875	medium	19	low	2688751	chromoarm	1390	no-RdDM	no-RdDM	ExpressedAndAnnotated	5822523	5824380	+	transcript_id-"dd27c674-382f-409a-9b9a-56743282107d|3"
Chr4	5833793	5834510	AT4TE24520	.	+	BRODYAGA2	MuDR	DNA	717	short	525	high	2700119	chromoarm	318	no-CHH	no-CHH	.	.	.	.	.
Chr4	5834510	5834736	AT4TE24525	.	+	BRODYAGA1A	MuDR	DNA	226	short	586	high	2700836	chromoarm	358	no-CHH	no-CHH	.	.	.	.	.
Chr4	5835507	5835597	AT4TE24530	.	-	ATREP5	Helitron	RC	90	tiny	624	high	2701833	chromoarm	95	no-CHH	no-CHH	.	.	.	.	.
Chr4	5835597	5837090	AT4TE24535	.	+	ATREP5	Helitron	RC	1493	short	624	high	2701923	chromoarm	185	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5837090	5837182	AT4TE24540	.	-	ATREP7	Helitron	RC	92	tiny	164	medium	2703416	chromoarm	1678	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5837984	5838747	AT4TE24545	.	+	HELITRONY1C	Helitron	RC	763	short	120	medium	2704310	chromoarm	1013	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5838747	5839310	AT4TE24550	.	+	ATREP3	Helitron	RC	563	short	1439	high	2705073	chromoarm	450	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	5839310	5839358	AT4TE24555	.	+	ATREP10B	Helitron	RC	48	tiny	491	high	2705636	chromoarm	402	no-CHH	no-CHH	.	.	.	.	.
Chr4	5843406	5843526	AT4TE24570	.	+	HELITRONY1E	Helitron	RC	120	short	447	high	2709732	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	5843526	5843662	AT4TE24575	.	-	ATREP4	Helitron	RC	136	short	832	high	2709852	chromoarm	118	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	5843662	5844554	AT4TE24580	.	-	ATREP11	Helitron	RC	892	short	841	high	2709988	chromoarm	254	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	5844554	5844928	AT4TE24585	.	-	ARNOLDY1	MuDR	DNA	374	short	237	high	2710880	chromoarm	1146	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5844928	5845120	AT4TE24590	.	+	HELITRONY3	Helitron	RC	192	short	1399	high	2711254	chromoarm	1520	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5845120	5846835	AT4TE24595	.	+	HELITRONY3	Helitron	RC	1715	short	1399	high	2711446	chromoarm	677	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5846835	5847043	AT4TE24600	.	+	ARNOLDY1	MuDR	DNA	208	short	237	high	2713161	chromoarm	469	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5851680	5851793	AT4TE24630	.	+	ATREP15	Helitron	RC	113	short	1003	high	2718006	chromoarm	2180	no-CHH	no-CHH	.	.	.	.	.
Chr4	5852885	5853077	AT4TE24635	.	-	ATRE1	Copia	LTR	192	short	22	low	2719211	chromoarm	2098	no-CHH	no-CHH	.	.	.	.	.
Chr4	5853461	5853568	AT4TE24640	.	-	ATREP10A	Helitron	RC	107	short	279	high	2719787	chromoarm	1607	no-CHH	no-CHH	.	.	.	.	.
Chr4	5853568	5854619	AT4TE24645	.	-	ATREP10D	Helitron	RC	1051	short	1295	high	2719894	chromoarm	556	no-CHH	no-CHH	.	.	.	.	.
Chr4	5854619	5855089	AT4TE24650	.	+	ATREP3	Helitron	RC	470	short	1439	high	2720945	chromoarm	86	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5857910	5858000	AT4TE24660	.	-	ATLANTYS3	Gypsy	LTR	91	tiny	142	medium	2724235	chromoarm	1379	.	.	LowExpressed	.	.	.	.
Chr4	5858001	5858032	AT4TE24665	.	-	ATLANTYS2	Gypsy	LTR	32	tiny	179	medium	2724326	chromoarm	1347	.	.	LowExpressed	.	.	.	.
Chr4	5858033	5858676	AT4TE24670	.	-	ATLANTYS2	Gypsy	LTR	644	short	179	medium	2724358	chromoarm	703	.	.	LowExpressed	.	.	.	.
Chr4	5861912	5864624	AT4TE24680	.	-	ATCOPIA9	Copia	LTR	2712	medium	9	low	2728238	chromoarm	241	no-RdDM	no-CHH	.	.	.	.	.
Chr4	5865549	5865588	AT4TE24685	.	+	ATREP10C	Helitron	RC	40	tiny	123	medium	2731874	chromoarm	3877	.	.	.	.	.	.	.
Chr4	5865589	5865639	AT4TE24690	.	-	ARNOLDY2	MuDR	DNA	51	tiny	288	high	2731914	chromoarm	3917	.	.	.	.	.	.	.
Chr4	5865640	5865743	AT4TE24695	.	+	ATREP10C	Helitron	RC	104	short	123	medium	2731965	chromoarm	3968	.	.	.	.	.	.	.
Chr4	5865743	5867198	AT4TE24700	.	-	ARNOLDY2	MuDR	DNA	1455	short	288	high	2732069	chromoarm	3090	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5867199	5867299	AT4TE24705	.	+	HELITRONY3	Helitron	RC	101	short	1399	high	2733524	chromoarm	2989	.	.	.	.	.	.	.
Chr4	5867300	5868589	AT4TE24710	.	+	HELITRONY3	Helitron	RC	1290	short	1399	high	2733625	chromoarm	1699	.	.	.	.	.	.	.
Chr4	5869630	5870224	AT4TE24715	.	+	VANDAL3	MuDR	DNA	595	short	177	medium	2735955	chromoarm	64	.	.	.	.	.	.	.
Chr4	5871306	5872383	AT4TE24720	.	+	ATGP8	Gypsy	LTR	1077	short	92	medium	2737632	chromoarm	17	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	5872383	5872686	AT4TE24725	.	+	ATGP8	Gypsy	LTR	303	short	92	medium	2738709	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	5872717	5872739	AT4TE24730	.	+	VANDAL3	MuDR	DNA	23	tiny	177	medium	2739042	chromoarm	0	.	.	.	.	.	.	.
Chr4	5872739	5874342	AT4TE24735	.	+	VANDAL3	MuDR	DNA	1603	short	177	medium	2739065	chromoarm	0	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	5875207	5875297	AT4TE24740	.	-	ATLANTYS3	Gypsy	LTR	91	tiny	142	medium	2741532	chromoarm	1389	.	.	LowExpressed	.	.	.	.
Chr4	5875298	5875329	AT4TE24745	.	-	ATLANTYS2	Gypsy	LTR	32	tiny	179	medium	2741623	chromoarm	1357	.	.	LowExpressed	.	.	.	.
Chr4	5875330	5875973	AT4TE24750	.	-	ATLANTYS2	Gypsy	LTR	644	short	179	medium	2741655	chromoarm	713	.	.	ExpressedAndAnnotated	5875574	5876371	+	transcript_id-"d2f7ab4d-ec2c-4e89-842d-7326350911c5|7"
Chr4	5879219	5881931	AT4TE24760	.	-	ATCOPIA9	Copia	LTR	2712	medium	9	low	2745545	chromoarm	241	no-RdDM	no-CHH	.	.	.	.	.
Chr4	5882856	5882946	AT4TE24765	.	+	ATREP10C	Helitron	RC	91	tiny	123	medium	2749181	chromoarm	3877	.	.	.	.	.	.	.
Chr4	5882947	5883050	AT4TE24770	.	+	ATREP10C	Helitron	RC	104	short	123	medium	2749272	chromoarm	3968	.	.	.	.	.	.	.
Chr4	5883051	5884456	AT4TE24775	.	-	ARNOLDY2	MuDR	DNA	1406	short	288	high	2749376	chromoarm	3135	.	.	.	.	.	.	.
Chr4	5884456	5885365	AT4TE24780	.	+	HELITRONY3	Helitron	RC	909	short	1399	high	2750782	chromoarm	2226	no-CHH	no-CHH	.	.	.	.	.
Chr4	5885366	5885893	AT4TE24785	.	+	HELITRONY3	Helitron	RC	528	short	1399	high	2751691	chromoarm	1698	.	.	.	.	.	.	.
Chr4	5886932	5887527	AT4TE24790	.	+	VANDAL3	MuDR	DNA	595	short	177	medium	2753258	chromoarm	64	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5888609	5889685	AT4TE24795	.	+	ATGP8	Gypsy	LTR	1076	short	92	medium	2754935	chromoarm	17	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	5889685	5889988	AT4TE24800	.	+	ATGP8	Gypsy	LTR	303	short	92	medium	2756011	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	5890019	5890041	AT4TE24805	.	+	VANDAL3	MuDR	DNA	23	tiny	177	medium	2756344	chromoarm	0	.	.	.	.	.	.	.
Chr4	5890041	5891644	AT4TE24810	.	+	VANDAL3	MuDR	DNA	1603	short	177	medium	2756367	chromoarm	0	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr4	5892510	5892584	AT4TE24815	.	-	ATLANTYS3	Gypsy	LTR	75	tiny	142	medium	2758835	chromoarm	2447	.	.	.	.	.	.	.
Chr4	5892633	5893276	AT4TE24820	.	-	ATLANTYS2	Gypsy	LTR	644	short	179	medium	2758958	chromoarm	2570	.	.	LowExpressed	.	.	.	.
Chr4	5893405	5895491	AT4TE24825	.	+	VANDAL3	MuDR	DNA	2086	medium	177	medium	2759731	chromoarm	3343	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	5895491	5896385	AT4TE24830	.	-	ATREP15	Helitron	RC	894	short	1003	high	2761817	chromoarm	2622	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	5896385	5896452	AT4TE24835	.	-	HELITRONY1B	Helitron	RC	67	tiny	414	high	2762711	chromoarm	2555	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	5896721	5896785	AT4TE24840	.	-	ATREP17	MuDR	DNA	64	tiny	34	low	2763047	chromoarm	2222	no-CHH	no-RdDM	LowExpressed	.	.	.	.
Chr4	5896785	5897263	AT4TE24845	.	+	ATREP17	MuDR	DNA	478	short	34	low	2763111	chromoarm	1744	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	5897893	5898382	AT4TE24850	.	+	HELITRONY1B	Helitron	RC	489	short	414	high	2764219	chromoarm	625	no-CHH	no-RdDM	.	.	.	.	.
Chr4	5898382	5898641	AT4TE24855	.	-	ATREP19	.	DNA	259	short	189	medium	2764708	chromoarm	366	no-RdDM	no-CHH	.	.	.	.	.
Chr4	5901479	5901553	AT4TE24865	.	-	ATLANTYS3	Gypsy	LTR	75	tiny	142	medium	2767804	chromoarm	789	.	.	LowExpressed	.	.	.	.
Chr4	5901602	5902245	AT4TE24870	.	-	ATLANTYS2	Gypsy	LTR	644	short	179	medium	2767927	chromoarm	703	.	.	LowExpressed	.	.	.	.
Chr4	5905481	5908220	AT4TE24880	.	-	ATCOPIA9	Copia	LTR	2739	medium	9	low	2771807	chromoarm	241	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	5908984	5909222	AT4TE24885	.	-	HELITRONY3	Helitron	RC	238	short	1399	high	2775310	chromoarm	3744	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5909222	5909247	AT4TE24890	.	+	ATREP10B	Helitron	RC	25	tiny	491	high	2775548	chromoarm	3982	DCL3-RdDM	no-RdDM	.	.	.	.	.
Chr4	5909247	5911593	AT4TE24895	.	+	HELITRONY3	Helitron	RC	2346	medium	1399	high	2775573	chromoarm	4007	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5911844	5912004	AT4TE24900	.	+	ATTIRX1A	.	DNA	160	short	63	medium	2778170	chromoarm	6604	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5913029	5913624	AT4TE24905	.	+	VANDAL3	MuDR	DNA	595	short	177	medium	2779355	chromoarm	7789	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	5914038	5916986	AT4TE24910	.	-	ATCOPIA9	Copia	LTR	2948	medium	9	low	2780364	chromoarm	6437	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	5913737,5916656	5915087,5915175	+,-	transcript_id-"da397c9d-eacd-44b4-b79d-bebbfd7a5814|10",transcript_id-"87e284a3-11d9-4c88-b78e-3c040d7c101f|19"
Chr4	5917322	5917471	AT4TE24915	.	-	ATGP8	Gypsy	LTR	149	short	92	medium	2783648	chromoarm	5952	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	5919330	5919537	AT4TE24925	.	-	ATCOPIA30	Copia	LTR	207	short	33	low	2785656	chromoarm	3886	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5919537	5920712	AT4TE24930	.	+	ATREP10D	Helitron	RC	1175	short	1295	high	2785863	chromoarm	2711	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	5920712	5920773	AT4TE24935	.	+	ARNOLDY1	MuDR	DNA	61	tiny	237	high	2787038	chromoarm	2650	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	5921082	5921272	AT4TE24940	.	+	ATTIRX1B	.	DNA	190	short	44	low	2787408	chromoarm	2151	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	5922121	5922255	AT4TE24945	.	+	ATMUNX1	MuDR	DNA	134	short	155	medium	2788447	chromoarm	1168	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5923008	5923322	AT4TE24950	.	-	ATMUNX1	MuDR	DNA	314	short	155	medium	2789334	chromoarm	101	no-CHH	no-CHH	.	.	.	.	.
Chr4	5929270	5929389	AT4TE24980	.	+	TNAT2A	.	DNA	119	short	38	low	2795596	chromoarm	1673	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5929503	5930077	AT4TE24985	.	+	ATREP5	Helitron	RC	574	short	624	high	2795829	chromoarm	1239	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5930948	5931027	AT4TE24990	.	+	HELITRONY3	Helitron	RC	79	tiny	1399	high	2797274	chromoarm	289	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5932445	5932548	AT4TE24995	.	-	HELITRONY1D	Helitron	RC	103	short	756	high	2798771	chromoarm	293	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5932548	5933674	AT4TE25000	.	-	HELITRONY1D	Helitron	RC	1126	short	756	high	2798874	chromoarm	396	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5933674	5934828	AT4TE25005	.	-	VANDAL18NA	MuDR	DNA	1154	short	24	low	2800000	chromoarm	1522	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5934828	5936446	AT4TE25010	.	-	ARNOLDY2	MuDR	DNA	1618	short	288	high	2801154	chromoarm	2676	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5936447	5937003	AT4TE25015	.	-	HELITRONY1D	Helitron	RC	557	short	756	high	2802772	chromoarm	3182	.	.	.	.	.	.	.
Chr4	5937003	5937042	AT4TE25020	.	-	HELITRONY1D	Helitron	RC	39	tiny	756	high	2803329	chromoarm	3143	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5937042	5937270	AT4TE25025	.	-	ATREP15	Helitron	RC	228	short	1003	high	2803368	chromoarm	2915	PolIV-and-RDR6-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	5938884	5939226	AT4TE25030	.	-	ATHILA7	Gypsy	LTR	342	short	134	medium	2805210	chromoarm	959	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	5943241	5951590	AT4TE25050	.	-	VANDAL6	MuDR	DNA	8349	long	89	medium	2809567	chromoarm	0	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	5943497,5947736,5947330,5951414	5946241,5946795,5946826,5948313	+,-,-,-	transcript_id-"61d088db-bba5-48ae-be28-8df0c459bac7|20",transcript_id-"5b008614-8a8b-45dd-9026-2b046205eab5|195",transcript_id-"995944de-95f3-424d-bc61-5c276856a7da|7",transcript_id-"59f700f9-0833-43d9-835e-298ad1622b92|13"
Chr4	5951593	5951664	AT4TE25055	.	-	VANDAL7	MuDR	DNA	71	tiny	36	low	2817919	chromoarm	8313	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5951789	5952036	AT4TE25060	.	-	VANDAL7	MuDR	DNA	247	short	36	low	2818115	chromoarm	8509	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	5952036	5961596	AT4TE25065	.	-	VANDAL7	MuDR	DNA	9560	long	36	low	2818362	chromoarm	722	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	5954113,5954399,5956074,5958051	5953100,5955071,5955240,5956742	-,+,-,-	transcript_id-"8dedb667-a381-4798-af0c-9bb030e74a9b|9",transcript_id-"8fdfd699-36ac-4e67-92f0-b45027b3a913|3",transcript_id-"f82570e3-a3d9-4faf-87a1-3ad536d3fb57|205",transcript_id-"08a60c98-d2c4-472d-98a0-996ac024d532|6"
Chr4	5964191	5964448	AT4TE25075	.	-	ATREP11	Helitron	RC	257	short	841	high	2830517	chromoarm	415	no-CHH	no-CHH	.	.	.	.	.
Chr4	5964449	5964685	AT4TE25080	.	+	ATDNATA1	Mariner	DNA	237	short	28	low	2830774	chromoarm	672	.	.	.	.	.	.	.
Chr4	5964685	5964814	AT4TE25085	.	-	HELITRONY3	Helitron	RC	129	short	1399	high	2831011	chromoarm	909	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	5964814	5965539	AT4TE25090	.	+	ATREP1	Helitron	RC	725	short	498	high	2831140	chromoarm	1038	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	5965672	5965692	AT4TE25095	.	+	ATCOPIA69	Copia	LTR	20	tiny	25	low	2831998	chromoarm	1896	no-RdDM	no-CHH	.	.	.	.	.
Chr4	5965692	5970901	AT4TE25100	.	+	ATCOPIA69	Copia	LTR	5209	long	25	low	2832018	chromoarm	30	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	5965795	5965855	AT4TE25105	.	+	ATCOPIA69	Copia	LTR	60	tiny	25	low	2832121	chromoarm	2019	no-RdDM	no-CHH	.	.	.	.	.
Chr4	5970901	5970920	AT4TE25130	.	+	ATCOPIA69	Copia	LTR	19	tiny	25	low	2837227	chromoarm	11	no-CHH	no-CHH	.	.	.	.	.
Chr4	5976694	5977326	AT4TE25160	.	+	ATHATN6	HAT	DNA	632	short	43	low	2843020	chromoarm	1319	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5979420	5979718	AT4TE25170	.	+	DT1	Mariner	DNA	298	short	123	medium	2845746	chromoarm	2496	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	5980214	5980666	AT4TE25175	.	+	ATHILA4B_LTR	Gypsy	LTR	452	short	143	medium	2846540	chromoarm	1548	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5983868	5984066	AT4TE25185	.	-	ATREP16	MuDR	DNA	198	short	47	low	2850194	chromoarm	0	no-RdDM	no-CHH	.	.	.	.	.
Chr4	5985259	5985454	AT4TE25190	.	-	ATCOPIA95	Copia	LTR	195	short	72	medium	2851585	chromoarm	759	no-CHH	no-CHH	.	.	.	.	.
Chr4	5986974	5987003	AT4TE25195	.	+	ATCOPIA51	Copia	LTR	29	tiny	14	low	2853300	chromoarm	2474	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	5987003	5991976	AT4TE25200	.	+	ATCOPIA51	Copia	LTR	4973	medium	14	low	2853329	chromoarm	1042	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	5987279	5989051	+	transcript_id-"04188744-4f27-497d-a08a-18b2050409dd|16"
Chr4	5992064	5992690	AT4TE25205	.	+	ATMU7	MuDR	DNA	626	short	32	low	2858390	chromoarm	328	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	5995271	5995873	AT4TE25215	.	-	ARNOLDY1	MuDR	DNA	602	short	237	high	2861597	chromoarm	986	no-CHH	no-CHH	.	.	.	.	.
Chr4	5995875	5996673	AT4TE25220	.	+	ARNOLDY2	MuDR	DNA	798	short	288	high	2862201	chromoarm	186	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	5996673	5996861	AT4TE25225	.	-	ATREP15	Helitron	RC	188	short	1003	high	2862999	chromoarm	0	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr4	5996861	5996896	AT4TE25230	.	+	HELITRONY1D	Helitron	RC	35	tiny	756	high	2863187	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	5998173	5998422	AT4TE25235	.	-	ATHILA8A	Gypsy	LTR	250	short	97	medium	2864498	chromoarm	708	.	.	.	.	.	.	.
Chr4	5998580	5999148	AT4TE25240	.	+	HELITRONY1D	Helitron	RC	568	short	756	high	2864906	chromoarm	0	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	5998613	5999048	AT4TE25245	.	-	BRODYAGA1A	MuDR	DNA	435	short	586	high	2864939	chromoarm	82	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	5999747	5999974	AT4TE25250	.	-	TA11	L1	LINE	227	short	157	medium	2866073	chromoarm	266	no-RdDM	no-CHH	.	.	.	.	.
Chr4	6000454	6000703	AT4TE25255	.	-	ATHILA8A	Gypsy	LTR	250	short	97	medium	2866779	chromoarm	707	.	.	.	.	.	.	.
Chr4	6000758	6000933	AT4TE25260	.	-	ATREP4	Helitron	RC	175	short	832	high	2867084	chromoarm	477	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	6000933	6001434	AT4TE25265	.	-	HELITRONY1D	Helitron	RC	501	short	756	high	2867259	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	6002735	6002985	AT4TE25270	.	-	ATHILA8A	Gypsy	LTR	250	short	97	medium	2869061	chromoarm	704	no-CHH	no-CHH	.	.	.	.	.
Chr4	6003140	6003240	AT4TE25275	.	-	ATREP5	Helitron	RC	100	short	624	high	2869466	chromoarm	449	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	6003240	6003726	AT4TE25280	.	+	HELITRONY1D	Helitron	RC	486	short	756	high	2869566	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	6004302	6004529	AT4TE25285	.	-	TA11	L1	LINE	227	short	157	medium	2870628	chromoarm	262	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	6005009	6005172	AT4TE25290	.	-	ATHILA8A	Gypsy	LTR	164	short	97	medium	2871334	chromoarm	792	.	.	.	.	.	.	.
Chr4	6005172	6005965	AT4TE25295	.	+	ATREP11	Helitron	RC	793	short	841	high	2871498	chromoarm	0	no-RdDM	no-CHH	.	.	.	.	.
Chr4	6006581	6006806	AT4TE25300	.	-	TA11	L1	LINE	225	short	157	medium	2872907	chromoarm	266	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	6008491	6008604	AT4TE25305	.	+	ATHILA7	Gypsy	LTR	113	short	134	medium	2874817	chromoarm	2176	no-CHH	no-CHH	.	.	.	.	.
Chr4	6012870	6013354	AT4TE25320	.	+	ATCOPIA91	Copia	LTR	484	short	7	low	2879196	chromoarm	2228	no-CHH	DCL3-RdDM	.	.	.	.	.
Chr4	6013354	6014162	AT4TE25325	.	+	ATCOPIA90	Copia	LTR	808	short	6	low	2879680	chromoarm	1420	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	6015348	6015496	AT4TE25330	.	+	ATHAT1	HAT	DNA	148	short	105	medium	2881674	chromoarm	86	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	6015545	6015747	AT4TE25335	.	-	ATLINE1_6	L1	LINE	202	short	129	medium	2881871	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	6017168	6017478	AT4TE25340	.	-	BRODYAGA1A	MuDR	DNA	310	short	586	high	2883494	chromoarm	593	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	6019557	6019884	AT4TE25350	.	+	HELITRON4	Helitron	RC	327	short	199	medium	2885883	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	6020241	6020325	AT4TE25355	.	+	ATENSPM1A	En-Spm	DNA	85	tiny	77	medium	2886566	chromoarm	662	.	.	.	.	.	.	.
Chr4	6024300	6024797	AT4TE25370	.	+	ATLINE1A	L1	LINE	497	short	289	high	2890626	chromoarm	172	PolIV-RdDM	RDR6-RdDM	.	.	.	.	.
Chr4	6027162	6028139	AT4TE25380	.	-	ATREP11	Helitron	RC	977	short	841	high	2893488	chromoarm	411	no-CHH	no-CHH	.	.	.	.	.
Chr4	6028406	6028699	AT4TE25385	.	+	ATLINE1_3A	L1	LINE	293	short	160	medium	2894732	chromoarm	713	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	6030003	6030024	AT4TE25390	.	-	RathE2_cons	.	RathE2_cons	21	tiny	74	medium	2896329	chromoarm	279	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	6030024	6030310	AT4TE25395	.	-	RathE2_cons	.	RathE2_cons	286	short	74	medium	2896350	chromoarm	300	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6030310	6030336	AT4TE25400	.	-	RathE2_cons	.	RathE2_cons	26	tiny	74	medium	2896636	chromoarm	586	no-CHH	no-RdDM	.	.	.	.	.
Chr4	6032411	6032434	AT4TE25410	.	-	ATREP4	Helitron	RC	23	tiny	832	high	2898737	chromoarm	2687	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	6032434	6032751	AT4TE25415	.	-	ATREP10B	Helitron	RC	317	short	491	high	2898760	chromoarm	2710	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	6032751	6032956	AT4TE25420	.	+	ATREP6	Helitron	RC	205	short	181	medium	2899077	chromoarm	3027	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	6032956	6034618	AT4TE25425	.	+	ATREP8	Helitron	RC	1662	short	75	medium	2899282	chromoarm	2950	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6034730	6036483	AT4TE25430	.	+	ATCOPIA97	Copia	LTR	1753	short	10	low	2901056	chromoarm	1085	no-RdDM	no-CHH	.	.	.	.	.
Chr4	6036483	6036503	AT4TE25435	.	+	ATCOPIA65A	Copia	LTR	20	tiny	9	low	2902809	chromoarm	1065	no-CHH	no-CHH	.	.	.	.	.
Chr4	6037931	6039098	AT4TE25440	.	+	HELITRONY1E	Helitron	RC	1167	short	447	high	2904257	chromoarm	0	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	6043974	6045003	AT4TE25470	.	+	ATREP10D	Helitron	RC	1029	short	1295	high	2910300	chromoarm	293	no-CHH	no-CHH	.	.	.	.	.
Chr4	6045003	6045095	AT4TE25475	.	+	ATREP9	Helitron	RC	92	tiny	201	high	2911329	chromoarm	1322	no-CHH	no-CHH	.	.	.	.	.
Chr4	6045095	6046389	AT4TE25480	.	+	ATREP9	Helitron	RC	1294	short	201	high	2911421	chromoarm	1414	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	6046389	6046473	AT4TE25485	.	+	ATREP13	Helitron	RC	84	tiny	106	medium	2912715	chromoarm	2708	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	6046473	6046685	AT4TE25490	.	-	ATREP10D	Helitron	RC	212	short	1295	high	2912799	chromoarm	2792	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	6046685	6047294	AT4TE25495	.	-	HARBINGER	Harbinger	DNA	609	short	90	medium	2913011	chromoarm	2265	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6056547	6056968	AT4TE25540	.	+	BRODYAGA1A	MuDR	DNA	421	short	586	high	2922873	chromoarm	2234	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	6057436	6057612	AT4TE25545	.	+	ATDNAI27T9C	MuDR	DNA	177	short	108	medium	2923761	chromoarm	3122	.	.	.	.	.	.	.
Chr4	6063180	6063781	AT4TE25570	.	-	ATREP4	Helitron	RC	601	short	832	high	2929506	chromoarm	62	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	6064136	6064176	AT4TE25575	.	+	BRODYAGA1A	MuDR	DNA	40	tiny	586	high	2930462	chromoarm	1018	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	6064176	6065506	AT4TE25580	.	+	ATREP10A	Helitron	RC	1330	short	279	high	2930502	chromoarm	621	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6065506	6065543	AT4TE25585	.	+	ATREP10B	Helitron	RC	37	tiny	491	high	2931832	chromoarm	584	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6067396	6072635	AT4TE25590	.	+	ATCOPIA49	Copia	LTR	5239	long	34	low	2933722	chromoarm	378	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	6072656	6072792	AT4TE25595	.	-	BRODYAGA1A	MuDR	DNA	136	short	586	high	2938982	chromoarm	221	no-RdDM	no-CHH	.	.	.	.	.
Chr4	6079404	6079785	AT4TE25630	.	+	ATREP5	Helitron	RC	381	short	624	high	2945730	chromoarm	505	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6079868	6082397	AT4TE25635	.	-	VANDAL8	MuDR	DNA	2529	medium	123	medium	2946194	chromoarm	969	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	6082397	6083488	AT4TE25640	.	-	ATREP15	Helitron	RC	1091	short	1003	high	2948723	chromoarm	371	no-CHH	no-CHH	.	.	.	.	.
Chr4	6083488	6083532	AT4TE25645	.	+	ATREP11	Helitron	RC	44	tiny	841	high	2949814	chromoarm	327	no-CHH	no-CHH	.	.	.	.	.
Chr4	6091270	6091546	AT4TE25680	.	+	ATLINE1_4	L1	LINE	276	short	102	medium	2957596	chromoarm	666	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	6093729	6093889	AT4TE25690	.	+	HELITRONY3	Helitron	RC	160	short	1399	high	2960055	chromoarm	2835	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	6093889	6094703	AT4TE25695	.	-	HELITRONY3	Helitron	RC	814	short	1399	high	2960215	chromoarm	2021	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	6094703	6094942	AT4TE25700	.	+	ATREP3	Helitron	RC	239	short	1439	high	2961029	chromoarm	1782	no-CHH	no-CHH	ExpressedAndAnnotated	6094930,6094930	6093398,6093447	-,-	transcript_id-"436090b2-55cf-4ed7-bd99-b915cf78d73b|12",transcript_id-"b40c21e8-e60e-457b-9559-803a3aaa5ad4|43"
Chr4	6096961	6097740	AT4TE25710	.	-	HELITRONY3	Helitron	RC	779	short	1399	high	2963287	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	6098509	6099120	AT4TE25715	.	-	ATCOPIA42	Copia	LTR	611	short	35	low	2964835	chromoarm	521	PolIV-RdDM	RDR6-RdDM	.	.	.	.	.
Chr4	6099295	6099323	AT4TE25720	.	-	ATREP11	Helitron	RC	28	tiny	841	high	2965621	chromoarm	1237	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	6099323	6099764	AT4TE25725	.	-	BRODYAGA1A	MuDR	DNA	441	short	586	high	2965649	chromoarm	796	no-CHH	no-CHH	.	.	.	.	.
Chr4	6099764	6099902	AT4TE25730	.	-	BRODYAGA1A	MuDR	DNA	138	short	586	high	2966090	chromoarm	658	PolIV-and-RDR6-RdDM	RDR6-RdDM	.	.	.	.	.
Chr4	6100131	6100517	AT4TE25735	.	+	HELITRONY1D	Helitron	RC	386	short	756	high	2966457	chromoarm	43	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	6102120	6102666	AT4TE25740	.	+	ATHATN3	HAT	DNA	546	short	70	medium	2968446	chromoarm	617	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	6102666	6103114	AT4TE25745	.	-	ATREP10	Helitron	RC	448	short	63	medium	2968992	chromoarm	1163	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	6109079	6109114	AT4TE25770	.	-	HELITRONY1A	Helitron	RC	35	tiny	271	high	2975405	chromoarm	30	no-CHH	no-CHH	.	.	.	.	.
Chr4	6109114	6109165	AT4TE25775	.	-	HELITRONY3	Helitron	RC	51	tiny	1399	high	2975440	chromoarm	65	no-CHH	no-CHH	.	.	.	.	.
Chr4	6109165	6110118	AT4TE25780	.	+	ATREP11	Helitron	RC	953	short	841	high	2975491	chromoarm	116	no-CHH	no-CHH	.	.	.	.	.
Chr4	6110310	6111158	AT4TE25785	.	+	AT9NMU1	MuDR	DNA	848	short	45	low	2976636	chromoarm	1261	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	6111163	6111702	AT4TE25790	.	+	ATREP3	Helitron	RC	539	short	1439	high	2977489	chromoarm	2114	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	6111274	6111504	AT4TE25795	.	+	ATTIRTA1	Tc1	DNA	230	short	95	medium	2977600	chromoarm	2225	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	6113709	6116485	AT4TE25805	.	+	AT9TSD1	MuDR	DNA	2776	medium	55	medium	2980035	chromoarm	333	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	6115342	6115890	AT4TE25810	.	+	ATREP2	Helitron	RC	548	short	164	medium	2981668	chromoarm	928	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6123683	6123776	AT4TE25850	.	-	BOMZH2	MuDR	DNA	93	tiny	47	low	2990009	chromoarm	666	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	6125912	6126255	AT4TE25860	.	+	ATHATN4	HAT	DNA	343	short	56	medium	2992238	chromoarm	0	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6126850	6132074	AT4TE25865	.	+	ATLINE1_6	L1	LINE	5224	long	129	medium	2993176	chromoarm	730	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	6132074	6132097	AT4TE25870	.	+	ATLINE1_6	L1	LINE	23	tiny	129	medium	2998400	chromoarm	1003	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	6132650	6132826	AT4TE25875	.	+	ATHATN4	HAT	DNA	176	short	56	medium	2998976	chromoarm	274	PolIV-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	6135786	6136142	AT4TE25885	.	+	HELITRONY1A	Helitron	RC	356	short	271	high	3002112	chromoarm	190	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6136142	6136221	AT4TE25890	.	+	ATREP11A	Helitron	RC	79	tiny	95	medium	3002468	chromoarm	111	no-CHH	no-CHH	.	.	.	.	.
Chr4	6140329	6140381	AT4TE25910	.	+	ATREP15	Helitron	RC	52	tiny	1003	high	3006655	chromoarm	478	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	6140382	6140945	AT4TE25915	.	+	ATREP13	Helitron	RC	564	short	106	medium	3006707	chromoarm	530	.	.	.	.	.	.	.
Chr4	6140945	6141037	AT4TE25920	.	+	ATREP13	Helitron	RC	92	tiny	106	medium	3007271	chromoarm	1094	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6141328	6142461	AT4TE25925	.	-	HELITRONY1E	Helitron	RC	1133	short	447	high	3007654	chromoarm	244	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6142461	6142597	AT4TE25930	.	-	BRODYAGA2	MuDR	DNA	136	short	525	high	3008787	chromoarm	108	no-CHH	no-CHH	.	.	.	.	.
Chr4	6146062	6146468	AT4TE25940	.	-	ATLINE2	L1	LINE	406	short	138	medium	3012388	chromoarm	301	no-CHH	no-CHH	.	.	.	.	.
Chr4	6157193	6157260	AT4TE26000	.	-	HELITRONY3	Helitron	RC	67	tiny	1399	high	3023519	chromoarm	139	no-RdDM	no-CHH	.	.	.	.	.
Chr4	6157260	6157520	AT4TE26005	.	-	ATREP11	Helitron	RC	260	short	841	high	3023586	chromoarm	206	no-RdDM	no-CHH	.	.	.	.	.
Chr4	6157520	6159506	AT4TE26010	.	+	ATREP6	Helitron	RC	1986	short	181	medium	3023846	chromoarm	31	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6157799	6157878	AT4TE26015	.	+	ATREP6	Helitron	RC	79	tiny	181	medium	3024125	chromoarm	745	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	6157878	6158535	AT4TE26020	.	-	ATREP11	Helitron	RC	657	short	841	high	3024204	chromoarm	824	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6159518	6159555	AT4TE26025	.	+	ATREP8	Helitron	RC	37	tiny	75	medium	3025844	chromoarm	0	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6161893	6162061	AT4TE26035	.	+	ARNOLDY1	MuDR	DNA	168	short	237	high	3028219	chromoarm	191	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6164724	6164799	AT4TE26045	.	+	ATREP10D	Helitron	RC	75	tiny	1295	high	3031050	chromoarm	2111	no-CHH	no-CHH	.	.	.	.	.
Chr4	6164828	6166767	AT4TE26050	.	-	ATREP3	Helitron	RC	1939	short	1439	high	3031154	chromoarm	2215	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6166767	6166803	AT4TE26055	.	+	ATREP3	Helitron	RC	36	tiny	1439	high	3033093	chromoarm	2831	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	6166803	6167264	AT4TE26060	.	-	ATREP4	Helitron	RC	461	short	832	high	3033129	chromoarm	2370	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	6167506	6167603	AT4TE26065	.	+	ATREP10D	Helitron	RC	97	tiny	1295	high	3033832	chromoarm	2031	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6167603	6168279	AT4TE26070	.	-	ARNOLDY2	MuDR	DNA	676	short	288	high	3033929	chromoarm	1355	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6168296	6169367	AT4TE26075	.	-	ATREP1	Helitron	RC	1072	short	498	high	3034621	chromoarm	267	.	.	.	.	.	.	.
Chr4	6169367	6169426	AT4TE26080	.	-	ATREP5	Helitron	RC	59	tiny	624	high	3035693	chromoarm	208	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr4	6169426	6169454	AT4TE26085	.	-	ATCOPIA28	Copia	LTR	28	tiny	81	medium	3035752	chromoarm	180	no-CHH	no-CHH	.	.	.	.	.
Chr4	6169454	6169830	AT4TE26090	.	+	BRODYAGA1A	MuDR	DNA	376	short	586	high	3035780	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	6170590	6171023	AT4TE26095	.	+	ATREP13	Helitron	RC	433	short	106	medium	3036916	chromoarm	575	no-CHH	no-CHH	.	.	.	.	.
Chr4	6171503	6171582	AT4TE26100	.	+	BRODYAGA2	MuDR	DNA	79	tiny	525	high	3037829	chromoarm	1488	no-CHH	no-CHH	.	.	.	.	.
Chr4	6171582	6172549	AT4TE26105	.	-	ATREP10A	Helitron	RC	967	short	279	high	3037908	chromoarm	1268	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6172552	6172635	AT4TE26110	.	-	ATREP4	Helitron	RC	83	tiny	832	high	3038878	chromoarm	1182	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr4	6172635	6172846	AT4TE26115	.	-	ATREP13	Helitron	RC	211	short	106	medium	3038961	chromoarm	971	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	6172846	6173524	AT4TE26120	.	-	ATREP13	Helitron	RC	678	short	106	medium	3039172	chromoarm	293	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6173524	6173721	AT4TE26125	.	+	ATREP3	Helitron	RC	197	short	1439	high	3039850	chromoarm	96	no-RdDM	no-CHH	.	.	.	.	.
Chr4	6178394	6178442	AT4TE26150	.	+	ATREP15	Helitron	RC	48	tiny	1003	high	3044720	chromoarm	1502	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	6178442	6179010	AT4TE26155	.	+	ATREP3	Helitron	RC	568	short	1439	high	3044768	chromoarm	1550	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6179010	6179205	AT4TE26160	.	-	ATHATN7	HAT	DNA	195	short	71	medium	3045336	chromoarm	2118	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6179240	6179590	AT4TE26165	.	+	ATREP11	Helitron	RC	350	short	841	high	3045566	chromoarm	2348	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	6183355	6184091	AT4TE26180	.	-	ATREP10D	Helitron	RC	736	short	1295	high	3049681	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	6184092	6184114	AT4TE26185	.	-	ATREP7	Helitron	RC	23	tiny	164	medium	3050417	chromoarm	0	.	.	LowExpressed	.	.	.	.
Chr4	6184637	6184665	AT4TE26190	.	-	BRODYAGA1A	MuDR	DNA	29	tiny	586	high	3050962	chromoarm	0	.	.	.	.	.	.	.
Chr4	6184665	6185125	AT4TE26195	.	-	BRODYAGA1	MuDR	DNA	460	short	251	high	3050991	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	6185125	6185174	AT4TE26200	.	-	BRODYAGA1A	MuDR	DNA	49	tiny	586	high	3051451	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	6187435	6188063	AT4TE26210	.	-	ATHATN6	HAT	DNA	628	short	43	low	3053761	chromoarm	802	no-CHH	no-CHH	.	.	.	.	.
Chr4	6193141	6193859	AT4TE26240	.	+	ATREP15	Helitron	RC	718	short	1003	high	3059467	chromoarm	290	no-CHH	no-CHH	.	.	.	.	.
Chr4	6193859	6193942	AT4TE26245	.	-	ATREP11	Helitron	RC	83	tiny	841	high	3060185	chromoarm	766	no-CHH	no-CHH	.	.	.	.	.
Chr4	6193942	6194167	AT4TE26250	.	+	ATREP5	Helitron	RC	225	short	624	high	3060268	chromoarm	541	no-CHH	no-CHH	.	.	.	.	.
Chr4	6195311	6195836	AT4TE26255	.	+	HELITRONY3	Helitron	RC	525	short	1399	high	3061637	chromoarm	10	no-RdDM	no-CHH	.	.	.	.	.
Chr4	6195836	6195974	AT4TE26260	.	-	HELITRONY1C	Helitron	RC	138	short	120	medium	3062162	chromoarm	535	no-RdDM	no-CHH	.	.	.	.	.
Chr4	6195974	6197362	AT4TE26265	.	-	HELITRONY1E	Helitron	RC	1388	short	447	high	3062300	chromoarm	673	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	6197692	6199939	AT4TE26270	.	-	VANDAL1N1	MuDR	DNA	2247	medium	52	medium	3064018	chromoarm	149	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6201507	6201649	AT4TE26275	.	+	ATLINE1_6	L1	LINE	142	short	129	medium	3067833	chromoarm	292	no-CHH	no-CHH	.	.	.	.	.
Chr4	6201666	6201872	AT4TE26280	.	+	ATHATN5	HAT	DNA	206	short	42	low	3067992	chromoarm	451	no-CHH	no-CHH	.	.	.	.	.
Chr4	6204452	6205222	AT4TE26290	.	-	BRODYAGA2	MuDR	DNA	770	short	525	high	3070778	chromoarm	3237	no-CHH	no-CHH	ExpressedAndAnnotated	6203993	6204546	+	transcript_id-"2b3a3e85-4d4c-471a-b763-6945221e06c9|5"
Chr4	6205222	6205265	AT4TE26295	.	-	ATREP1	Helitron	RC	43	tiny	498	high	3071548	chromoarm	4007	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	6206257	6206362	AT4TE26300	.	+	ATLINE1_3A	L1	LINE	105	short	160	medium	3072583	chromoarm	5042	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	6206997	6207062	AT4TE26305	.	+	ATREP15	Helitron	RC	65	tiny	1003	high	3073323	chromoarm	5782	no-CHH	no-CHH	.	.	.	.	.
Chr4	6207397	6207530	AT4TE26310	.	-	HELITRONY1E	Helitron	RC	133	short	447	high	3073723	chromoarm	6182	no-CHH	no-CHH	.	.	.	.	.
Chr4	6207530	6208484	AT4TE26315	.	+	ATREP11	Helitron	RC	954	short	841	high	3073856	chromoarm	6139	no-CHH	no-CHH	.	.	.	.	.
Chr4	6208484	6209577	AT4TE26320	.	-	ATREP5	Helitron	RC	1093	short	624	high	3074810	chromoarm	5046	no-CHH	no-CHH	.	.	.	.	.
Chr4	6209577	6209670	AT4TE26325	.	+	ATDNA12T3_2	.	DNA	93	tiny	660	high	3075903	chromoarm	4953	no-CHH	no-CHH	.	.	.	.	.
Chr4	6209998	6211623	AT4TE26330	.	-	ATHILA8A	Gypsy	LTR	1625	short	97	medium	3076324	chromoarm	3000	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	6211720	6211922	AT4TE26335	.	-	ATLINE2	L1	LINE	202	short	138	medium	3078046	chromoarm	2701	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	6214119	6214614	AT4TE26345	.	-	ATCOPIA44	Copia	LTR	495	short	12	low	3080445	chromoarm	9	no-RdDM	no-CHH	.	.	.	.	.
Chr4	6214888	6215545	AT4TE26350	.	-	ATDNA12T3_2	.	DNA	657	short	660	high	3081214	chromoarm	0	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	6216032	6216350	AT4TE26355	.	+	ATLINE1_3A	L1	LINE	318	short	160	medium	3082358	chromoarm	694	no-CHH	no-CHH	.	.	.	.	.
Chr4	6216350	6216441	AT4TE26360	.	-	HELITRONY1D	Helitron	RC	91	tiny	756	high	3082676	chromoarm	1012	no-CHH	no-CHH	.	.	.	.	.
Chr4	6216441	6217008	AT4TE26365	.	-	ATHPOGON1	Pogo	DNA	567	short	174	medium	3082767	chromoarm	1103	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6217010	6217075	AT4TE26370	.	-	ATREP15	Helitron	RC	65	tiny	1003	high	3083336	chromoarm	1425	no-CHH	no-CHH	.	.	.	.	.
Chr4	6238748	6238916	AT4TE26490	.	+	ATLINE1_3A	L1	LINE	168	short	160	medium	3105074	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	6242622	6242649	AT4TE26500	.	+	HELITRONY1E	Helitron	RC	27	tiny	447	high	3108948	chromoarm	2090	no-CHH	no-CHH	.	.	.	.	.
Chr4	6242649	6242827	AT4TE26505	.	-	ATREP15	Helitron	RC	178	short	1003	high	3108975	chromoarm	1912	no-CHH	no-CHH	.	.	.	.	.
Chr4	6242827	6244032	AT4TE26510	.	+	ATREP1	Helitron	RC	1205	short	498	high	3109153	chromoarm	707	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6244032	6244569	AT4TE26515	.	+	ATREP10D	Helitron	RC	537	short	1295	high	3110358	chromoarm	170	no-CHH	no-CHH	.	.	.	.	.
Chr4	6252428	6253061	AT4TE26550	.	+	ATMU10	MuDR	DNA	633	short	87	medium	3118754	chromoarm	398	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6253063	6253243	AT4TE26555	.	+	ATMUNX1	MuDR	DNA	180	short	155	medium	3119389	chromoarm	1033	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	6253243	6253600	AT4TE26560	.	+	HELITRONY3	Helitron	RC	357	short	1399	high	3119569	chromoarm	827	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	6253600	6253663	AT4TE26565	.	-	ATENSPM8	En-Spm	DNA	63	tiny	11	low	3119926	chromoarm	764	no-CHH	no-CHH	.	.	.	.	.
Chr4	6254625	6255536	AT4TE26570	.	+	ATREP15	Helitron	RC	911	short	1003	high	3120951	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	6257432	6257963	AT4TE26580	.	-	HELITRON4	Helitron	RC	531	short	199	medium	3123758	chromoarm	1146	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	6265205	6265700	AT4TE26620	.	+	ATMU6N1	MuDR	DNA	495	short	39	low	3131531	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	6273403	6273620	AT4TE26660	.	-	HELITRONY3	Helitron	RC	217	short	1399	high	3139729	chromoarm	305	no-CHH	no-CHH	.	.	.	.	.
Chr4	6273620	6275355	AT4TE26665	.	-	ATREP6	Helitron	RC	1735	short	181	medium	3139946	chromoarm	522	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6275355	6276779	AT4TE26670	.	+	ATREP10D	Helitron	RC	1424	short	1295	high	3141681	chromoarm	303	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	6278976	6279022	AT4TE26680	.	-	ATREP3	Helitron	RC	46	tiny	1439	high	3145302	chromoarm	695	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	6279022	6279609	AT4TE26685	.	+	ATREP3	Helitron	RC	587	short	1439	high	3145348	chromoarm	741	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6279961	6280286	AT4TE26690	.	-	ATHATN7	HAT	DNA	325	short	71	medium	3146287	chromoarm	1680	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	6280371	6280554	AT4TE26695	.	+	ATREP3	Helitron	RC	183	short	1439	high	3146697	chromoarm	2090	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6280554	6281175	AT4TE26700	.	-	ATHATN7	HAT	DNA	621	short	71	medium	3146880	chromoarm	2273	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	6281216	6281636	AT4TE26705	.	-	ATREP10A	Helitron	RC	420	short	279	high	3147542	chromoarm	2935	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6283197	6284421	AT4TE26710	.	-	ATREP15	Helitron	RC	1224	short	1003	high	3149523	chromoarm	198	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	6284421	6284492	AT4TE26715	.	-	ATREP4	Helitron	RC	71	tiny	832	high	3150747	chromoarm	127	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	6290634	6290788	AT4TE26740	.	-	RathE1_cons	.	RathE1_cons	154	short	213	high	3156960	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6302991	6303441	AT4TE26810	.	-	HELITRONY1E	Helitron	RC	450	short	447	high	3169317	chromoarm	431	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	6303441	6304518	AT4TE26815	.	-	ATREP10D	Helitron	RC	1077	short	1295	high	3169767	chromoarm	881	no-CHH	no-CHH	.	.	.	.	.
Chr4	6304518	6305363	AT4TE26820	.	-	HELITRONY3	Helitron	RC	845	short	1399	high	3170844	chromoarm	91	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	6307824	6308423	AT4TE26830	.	+	ATREP3	Helitron	RC	599	short	1439	high	3174150	chromoarm	538	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6308423	6308488	AT4TE26835	.	-	ATREP3	Helitron	RC	65	tiny	1439	high	3174749	chromoarm	602	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	6310972	6311351	AT4TE26845	.	-	ATREP1	Helitron	RC	379	short	498	high	3177298	chromoarm	125	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6311351	6311449	AT4TE26850	.	-	ARNOLDY2	MuDR	DNA	98	tiny	288	high	3177677	chromoarm	27	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	6311926	6312061	AT4TE26855	.	-	ATMU2	MuDR	DNA	135	short	64	medium	3178252	chromoarm	42	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	6312783	6312877	AT4TE26860	.	-	ATLINE1A	L1	LINE	94	tiny	289	high	3179109	chromoarm	226	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	6326953	6327856	AT4TE26940	.	+	ATREP4	Helitron	RC	903	short	832	high	3193279	chromoarm	279	no-CHH	no-CHH	.	.	.	.	.
Chr4	6331573	6331700	AT4TE26960	.	-	ATHATN1	HAT	DNA	127	short	69	medium	3197899	chromoarm	2015	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	6331945	6332854	AT4TE26965	.	+	ATLINE1_5	L1	LINE	909	short	91	medium	3198271	chromoarm	2387	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	6332027	6332846	+	transcript_id-"4637b5e1-2b70-426e-a4ce-0ace2460d17e|3"
Chr4	6333215	6333471	AT4TE26970	.	-	ATHAT7	HAT	DNA	256	short	20	low	3199541	chromoarm	2551	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	6334443	6334719	AT4TE26975	.	-	ATTIRTA1	Tc1	DNA	276	short	95	medium	3200769	chromoarm	1303	no-CHH	no-CHH	.	.	.	.	.
Chr4	6337442	6337520	AT4TE26985	.	-	RathE2_cons	.	RathE2_cons	78	tiny	74	medium	3203768	chromoarm	141	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	6339149	6340020	AT4TE26990	.	-	ATREP2	Helitron	RC	871	short	164	medium	3205475	chromoarm	1848	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6340022	6340308	AT4TE26995	.	+	ATREP13	Helitron	RC	287	short	106	medium	3206347	chromoarm	2720	.	.	.	.	.	.	.
Chr4	6342474	6342501	AT4TE27005	.	+	VANDAL13	MuDR	DNA	27	tiny	38	low	3208800	chromoarm	2085	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr4	6342502	6343147	AT4TE27010	.	+	ATREP3	Helitron	RC	646	short	1439	high	3208827	chromoarm	1439	.	.	.	.	.	.	.
Chr4	6343147	6343177	AT4TE27015	.	+	ATREP2	Helitron	RC	30	tiny	164	medium	3209473	chromoarm	1409	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6343177	6343199	AT4TE27020	.	+	ATREP1	Helitron	RC	22	tiny	498	high	3209503	chromoarm	1387	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	6343721	6343986	AT4TE27025	.	+	ATLINE1_6	L1	LINE	265	short	129	medium	3210047	chromoarm	600	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6344461	6344585	AT4TE27030	.	-	LIMPET1	MuDR	DNA	124	short	116	medium	3210787	chromoarm	1	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	6345783	6346264	AT4TE27035	.	+	ATHATN5	HAT	DNA	481	short	42	low	3212109	chromoarm	278	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	6349186	6350310	AT4TE27045	.	+	ATREP10D	Helitron	RC	1124	short	1295	high	3215512	chromoarm	40	PolIV-and-RDR6-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr4	6350310	6350865	AT4TE27050	.	-	HELITRONY3	Helitron	RC	555	short	1399	high	3216636	chromoarm	62	no-CHH	no-CHH	.	.	.	.	.
Chr4	6350382	6350753	AT4TE27055	.	-	ATTIR16T3A	.	DNA	371	short	106	medium	3216708	chromoarm	174	no-CHH	no-CHH	.	.	.	.	.
Chr4	6350865	6350923	AT4TE27060	.	-	ATREP10B	Helitron	RC	58	tiny	491	high	3217191	chromoarm	4	no-CHH	no-CHH	.	.	.	.	.
Chr4	6352072	6352529	AT4TE27065	.	+	ATREP19	.	DNA	457	short	189	medium	3218398	chromoarm	41	no-CHH	no-CHH	.	.	.	.	.
Chr4	6356117	6357211	AT4TE27075	.	-	ATREP10D	Helitron	RC	1094	short	1295	high	3222443	chromoarm	6	PolIV-RdDM	RDR6-RdDM	.	.	.	.	.
Chr4	6357354	6357663	AT4TE27080	.	-	HELITRONY3	Helitron	RC	309	short	1399	high	3223680	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	6357663	6358180	AT4TE27085	.	+	BRODYAGA1A	MuDR	DNA	517	short	586	high	3223989	chromoarm	0	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	6359734	6359928	AT4TE27090	.	-	RathE1_cons	.	RathE1_cons	194	short	213	high	3226060	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	6360804	6362056	AT4TE27095	.	-	ATREP11	Helitron	RC	1252	short	841	high	3227130	chromoarm	132	no-CHH	no-CHH	.	.	.	.	.
Chr4	6362056	6362160	AT4TE27100	.	+	ATREP11	Helitron	RC	104	short	841	high	3228382	chromoarm	28	no-RdDM	no-CHH	.	.	.	.	.
Chr4	6362160	6362203	AT4TE27105	.	+	ATREP15	Helitron	RC	43	tiny	1003	high	3228486	chromoarm	0	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	6362487	6363198	AT4TE27110	.	+	ATREP15	Helitron	RC	711	short	1003	high	3228813	chromoarm	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	6367133	6367559	AT4TE27130	.	-	ATREP3	Helitron	RC	426	short	1439	high	3233459	chromoarm	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	6373890	6374172	AT4TE27160	.	-	TSCL	.	LINE?	282	short	81	medium	3240216	chromoarm	413	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	6376134	6376231	AT4TE27170	.	-	HELITRONY1E	Helitron	RC	97	tiny	447	high	3242460	chromoarm	138	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	6376232	6379521	AT4TE27175	.	-	ATREP14	Helitron	RC	3290	medium	47	low	3242557	chromoarm	235	.	.	.	.	.	.	.
Chr4	6376540	6376566	AT4TE27180	.	-	ATREP14	Helitron	RC	26	tiny	47	low	3242866	chromoarm	544	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	6376567	6379046	AT4TE27185	.	+	ATDNAI26T9	MuDR	DNA	2480	medium	25	low	3242892	chromoarm	570	.	.	.	.	.	.	.
Chr4	6379521	6379683	AT4TE27190	.	-	ATREP14	Helitron	RC	162	short	47	low	3245847	chromoarm	274	no-CHH	no-CHH	.	.	.	.	.
Chr4	6379683	6379957	AT4TE27195	.	-	BRODYAGA2	MuDR	DNA	274	short	525	high	3246009	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	6382200	6382260	AT4TE27205	.	-	VANDALNX2	MuDR	DNA	60	tiny	37	low	3248526	chromoarm	480	no-CHH	no-CHH	.	.	.	.	.
Chr4	6382260	6382300	AT4TE27210	.	-	TNAT1A	.	DNA	40	tiny	162	medium	3248586	chromoarm	540	no-CHH	no-CHH	.	.	.	.	.
Chr4	6382300	6383183	AT4TE27215	.	+	HELITRONY1D	Helitron	RC	883	short	756	high	3248626	chromoarm	580	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	6388668	6389264	AT4TE27240	.	+	ATREP11	Helitron	RC	596	short	841	high	3254994	chromoarm	2722	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	6390323	6390861	AT4TE27245	.	-	ATLINEIII	L1	LINE	538	short	196	medium	3256649	chromoarm	1146	no-CHH	no-CHH	.	.	.	.	.
Chr4	6394549	6394590	AT4TE27255	.	+	ATREP11	Helitron	RC	41	tiny	841	high	3260875	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	6394590	6395333	AT4TE27260	.	+	ATHPOGON1	Pogo	DNA	743	short	174	medium	3260916	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6395343	6395448	AT4TE27265	.	-	BRODYAGA1	MuDR	DNA	105	short	251	high	3261669	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	6404780	6404846	AT4TE27310	.	+	ATREP15	Helitron	RC	66	tiny	1003	high	3271106	chromoarm	271	no-CHH	no-CHH	.	.	.	.	.
Chr4	6404846	6405186	AT4TE27315	.	+	ATREP6	Helitron	RC	340	short	181	medium	3271172	chromoarm	337	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6405186	6406457	AT4TE27320	.	+	ATREP11	Helitron	RC	1271	short	841	high	3271512	chromoarm	93	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6406457	6406521	AT4TE27325	.	+	ATREP10D	Helitron	RC	64	tiny	1295	high	3272783	chromoarm	29	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	6410435	6410466	AT4TE27340	.	+	ATCOPIA42	Copia	LTR	31	tiny	35	low	3276761	chromoarm	939	no-CHH	no-CHH	.	.	.	.	.
Chr4	6410466	6410769	AT4TE27345	.	+	ATCOPIA41	Copia	LTR	303	short	39	low	3276792	chromoarm	970	no-CHH	no-CHH	.	.	.	.	.
Chr4	6411365	6412015	AT4TE27350	.	+	ATCOPIA41	Copia	LTR	650	short	39	low	3277691	chromoarm	1869	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	6412123	6412581	AT4TE27355	.	+	VANDAL17	MuDR	DNA	458	short	178	medium	3278449	chromoarm	2627	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6413321	6414638	AT4TE27360	.	-	ATREP2A	Helitron	RC	1317	short	116	medium	3279647	chromoarm	648	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6414638	6414715	AT4TE27365	.	-	ATREP2A	Helitron	RC	77	tiny	116	medium	3280964	chromoarm	571	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6414715	6415072	AT4TE27370	.	-	HELITRONY1B	Helitron	RC	357	short	414	high	3281041	chromoarm	214	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6418500	6419803	AT4TE27380	.	-	ATREP11	Helitron	RC	1303	short	841	high	3284826	chromoarm	875	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6418669	6418746	AT4TE27385	.	-	TNAT1A	.	DNA	77	tiny	162	medium	3284995	chromoarm	1840	no-CHH	no-CHH	.	.	.	.	.
Chr4	6418746	6419397	AT4TE27390	.	-	TNAT1A	.	DNA	651	short	162	medium	3285072	chromoarm	1281	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6419397	6419552	AT4TE27395	.	-	TNAT1A	.	DNA	155	short	162	medium	3285723	chromoarm	1126	no-RdDM	no-CHH	.	.	.	.	.
Chr4	6426364	6426617	AT4TE27430	.	-	HELITRONY3	Helitron	RC	253	short	1399	high	3292690	chromoarm	724	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	6426617	6427761	AT4TE27435	.	-	ATREP2A	Helitron	RC	1144	short	116	medium	3292943	chromoarm	977	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6427761	6428157	AT4TE27440	.	-	ATREP3	Helitron	RC	396	short	1439	high	3294087	chromoarm	2121	no-CHH	no-CHH	.	.	.	.	.
Chr4	6428157	6429769	AT4TE27445	.	+	HELITRONY1B	Helitron	RC	1612	short	414	high	3294483	chromoarm	1760	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6429769	6429858	AT4TE27450	.	-	BRODYAGA1A	MuDR	DNA	89	tiny	586	high	3296095	chromoarm	1671	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	6429858	6429973	AT4TE27455	.	-	ATREP10D	Helitron	RC	115	short	1295	high	3296184	chromoarm	1556	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	6435419	6435833	AT4TE27480	.	-	ATREP10D	Helitron	RC	414	short	1295	high	3301745	chromoarm	909	no-CHH	no-CHH	.	.	.	.	.
Chr4	6437188	6437836	AT4TE27485	.	+	ATLINE1A	L1	LINE	648	short	289	high	3303514	chromoarm	2678	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	6437836	6438501	AT4TE27490	.	+	HELITRONY3	Helitron	RC	665	short	1399	high	3304162	chromoarm	3326	no-CHH	no-CHH	.	.	.	.	.
Chr4	6443575	6443813	AT4TE27520	.	-	BRODYAGA1	MuDR	DNA	238	short	251	high	3309901	chromoarm	414	no-CHH	no-CHH	.	.	.	.	.
Chr4	6444253	6444280	AT4TE27525	.	-	BRODYAGA1	MuDR	DNA	27	tiny	251	high	3310579	chromoarm	1092	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	6464585	6465573	AT4TE27630	.	+	ATREP19	.	DNA	988	short	189	medium	3330911	chromoarm	127	no-RdDM	no-CHH	.	.	.	.	.
Chr4	6465573	6465860	AT4TE27635	.	-	HELITRONY3	Helitron	RC	287	short	1399	high	3331899	chromoarm	1039	no-CHH	no-CHH	.	.	.	.	.
Chr4	6467400	6473067	AT4TE27640	.	+	ATCOPIA50	Copia	LTR	5667	long	17	low	3333726	chromoarm	130	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	6474279	6474443	AT4TE27645	.	-	ATLINE1_3A	L1	LINE	165	short	160	medium	3340604	chromoarm	0	.	.	.	.	.	.	.
Chr4	6475434	6475977	AT4TE27650	.	+	TAG1	HAT	DNA	543	short	28	low	3341760	chromoarm	131	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	6479408	6479737	AT4TE27660	.	-	ATSINE4	.	SINE	329	short	98	medium	3345734	chromoarm	329	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6482764	6483693	AT4TE27670	.	+	ATREP3	Helitron	RC	929	short	1439	high	3349090	chromoarm	206	no-CHH	no-CHH	.	.	.	.	.
Chr4	6483693	6483718	AT4TE27675	.	+	ATREP4	Helitron	RC	25	tiny	832	high	3350019	chromoarm	181	no-CHH	no-CHH	.	.	.	.	.
Chr4	6488516	6488794	AT4TE27700	.	+	ATTIRX1A	.	DNA	278	short	63	medium	3354842	chromoarm	2294	no-CHH	no-CHH	.	.	.	.	.
Chr4	6489858	6490530	AT4TE27705	.	+	ATHATN4	HAT	DNA	672	short	56	medium	3356184	chromoarm	558	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	6493689	6494250	AT4TE27715	.	+	ATREP4	Helitron	RC	561	short	832	high	3360015	chromoarm	1347	no-CHH	no-CHH	.	.	.	.	.
Chr4	6494250	6494558	AT4TE27720	.	-	ATTIRX1B	.	DNA	308	short	44	low	3360576	chromoarm	1396	no-CHH	no-CHH	.	.	.	.	.
Chr4	6494558	6494640	AT4TE27725	.	+	ARNOLDY2	MuDR	DNA	82	tiny	288	high	3360884	chromoarm	1314	no-CHH	no-CHH	.	.	.	.	.
Chr4	6503145	6503735	AT4TE27770	.	+	ATCOPIA55	Copia	LTR	590	short	9	low	3369471	chromoarm	279	no-CHH	no-CHH	.	.	.	.	.
Chr4	6503930	6505247	AT4TE27775	.	-	ATREP11	Helitron	RC	1317	short	841	high	3370256	chromoarm	1064	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6505253	6505488	AT4TE27780	.	-	HELITRONY3	Helitron	RC	235	short	1399	high	3371579	chromoarm	2387	no-CHH	no-CHH	.	.	.	.	.
Chr4	6505488	6505549	AT4TE27785	.	-	ATREP3	Helitron	RC	61	tiny	1439	high	3371814	chromoarm	2622	no-CHH	no-CHH	.	.	.	.	.
Chr4	6505549	6506345	AT4TE27790	.	-	ATREP13	Helitron	RC	796	short	106	medium	3371875	chromoarm	2254	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6506345	6507211	AT4TE27795	.	-	ATREP5	Helitron	RC	866	short	624	high	3372671	chromoarm	1388	no-CHH	no-CHH	.	.	.	.	.
Chr4	6507211	6507314	AT4TE27800	.	+	ATREP4	Helitron	RC	103	short	832	high	3373537	chromoarm	1285	no-CHH	no-CHH	.	.	.	.	.
Chr4	6528220	6529314	AT4TE27910	.	-	HELITRONY3	Helitron	RC	1094	short	1399	high	3394546	chromoarm	162	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	6529314	6537160	AT4TE27915	.	-	ATGP1	Gypsy	LTR	7846	long	144	medium	3395640	chromoarm	1256	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	6530348,6530298,6530347,6530348	6529332,6529400,6529672,6529672	-,-,-,-	transcript_id-"37f7b567-76f4-496c-88dd-5e78aa6ba333|3",transcript_id-"aff81833-da16-45e3-a09b-f5c77c7d8452|5",transcript_id-"b71d4044-dbeb-49ab-af36-2dfef5fb1dc8|4",transcript_id-"2530af09-be95-4dcf-bbc1-50369c03b9a6|6"
Chr4	6537171	6537326	AT4TE27920	.	-	HELITRONY1A	Helitron	RC	155	short	271	high	3403497	chromoarm	1592	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr4	6537326	6538341	AT4TE27925	.	+	ATREP11A	Helitron	RC	1015	short	95	medium	3403652	chromoarm	577	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6538341	6538366	AT4TE27930	.	+	ATREP4	Helitron	RC	25	tiny	832	high	3404667	chromoarm	552	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr4	6543492	6543925	AT4TE27960	.	-	ATREP10D	Helitron	RC	433	short	1295	high	3409818	chromoarm	220	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	6543925	6544017	AT4TE27965	.	-	ATDNA2T9C	MuDR	DNA	92	tiny	242	high	3410251	chromoarm	653	no-CHH	no-CHH	.	.	.	.	.
Chr4	6544768	6544840	AT4TE27970	.	-	HELITRONY3	Helitron	RC	72	tiny	1399	high	3411094	chromoarm	499	no-CHH	no-CHH	.	.	.	.	.
Chr4	6544840	6546186	AT4TE27975	.	+	HELITRONY1E	Helitron	RC	1346	short	447	high	3411166	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	6546186	6546235	AT4TE27980	.	-	ATREP5	Helitron	RC	49	tiny	624	high	3412512	chromoarm	0	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	6549539	6550621	AT4TE27990	.	+	ATREP10D	Helitron	RC	1082	short	1295	high	3415865	chromoarm	356	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6550621	6551583	AT4TE27995	.	-	ATREP15	Helitron	RC	962	short	1003	high	3416947	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	6551584	6551621	AT4TE28000	.	-	ATREP3	Helitron	RC	38	tiny	1439	high	3417909	chromoarm	0	.	.	.	.	.	.	.
Chr4	6551848	6552326	AT4TE28005	.	-	HELITRONY3	Helitron	RC	478	short	1399	high	3418174	chromoarm	14	no-CHH	no-RdDM	LowExpressed	.	.	.	.
Chr4	6552639	6552819	AT4TE28010	.	-	ATCOPIA12	Copia	LTR	180	short	15	low	3418965	chromoarm	805	PolIV-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	6552809	6552653	-	transcript_id-"810a95ee-40ee-428e-98bf-87c58807f2cc|5"
Chr4	6553428	6553570	AT4TE28015	.	-	ATCOPIA13	Copia	LTR	142	short	35	low	3419754	chromoarm	1594	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	6554672	6554976	AT4TE28020	.	+	ATDNA12T3_2	.	DNA	304	short	660	high	3420998	chromoarm	2359	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6554980	6555031	AT4TE28025	.	-	ATREP10D	Helitron	RC	51	tiny	1295	high	3421306	chromoarm	2304	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr4	6555031	6555518	AT4TE28030	.	-	ATREP6	Helitron	RC	487	short	181	medium	3421357	chromoarm	1817	no-CHH	no-CHH	.	.	.	.	.
Chr4	6555518	6556639	AT4TE28035	.	+	ATREP3	Helitron	RC	1121	short	1439	high	3421844	chromoarm	696	no-CHH	no-CHH	.	.	.	.	.
Chr4	6556639	6556916	AT4TE28040	.	+	HELITRONY1B	Helitron	RC	277	short	414	high	3422965	chromoarm	419	no-CHH	no-CHH	.	.	.	.	.
Chr4	6561514	6561712	AT4TE28060	.	-	ATREP4	Helitron	RC	198	short	832	high	3427840	chromoarm	35	no-CHH	no-RdDM	.	.	.	.	.
Chr4	6561712	6562012	AT4TE28065	.	+	ATREP1	Helitron	RC	300	short	498	high	3428038	chromoarm	233	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	6562012	6562791	AT4TE28070	.	-	ARNOLDY2	MuDR	DNA	779	short	288	high	3428338	chromoarm	533	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	6570417	6570728	AT4TE28110	.	-	HELITRONY1B	Helitron	RC	311	short	414	high	3436743	chromoarm	1270	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr4	6573380	6573792	AT4TE28120	.	-	ATREP19	.	DNA	412	short	189	medium	3439706	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	6578101	6578185	AT4TE28140	.	-	ATHATN8	HAT	DNA	84	tiny	15	low	3444427	chromoarm	1870	no-CHH	no-CHH	.	.	.	.	.
Chr4	6579264	6579467	AT4TE28145	.	-	ATREP4	Helitron	RC	203	short	832	high	3445590	chromoarm	3033	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6579838	6579976	AT4TE28150	.	+	HELITRONY1E	Helitron	RC	138	short	447	high	3446164	chromoarm	2558	no-CHH	no-CHH	.	.	.	.	.
Chr4	6579976	6579997	AT4TE28155	.	+	ATREP1	Helitron	RC	21	tiny	498	high	3446302	chromoarm	2537	no-CHH	no-CHH	.	.	.	.	.
Chr4	6581049	6581638	AT4TE28160	.	+	HELITRONY3	Helitron	RC	589	short	1399	high	3447375	chromoarm	896	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6584110	6584184	AT4TE28170	.	-	ATREP10D	Helitron	RC	74	tiny	1295	high	3450436	chromoarm	542	no-CHH	no-CHH	.	.	.	.	.
Chr4	6584184	6584434	AT4TE28175	.	+	ATTIRTA1	Tc1	DNA	250	short	95	medium	3450510	chromoarm	292	no-CHH	no-CHH	.	.	.	.	.
Chr4	6584434	6584485	AT4TE28180	.	-	ATREP10D	Helitron	RC	51	tiny	1295	high	3450760	chromoarm	241	no-CHH	no-CHH	.	.	.	.	.
Chr4	6584485	6584535	AT4TE28185	.	+	BRODYAGA1A	MuDR	DNA	50	tiny	586	high	3450811	chromoarm	191	no-CHH	no-CHH	.	.	.	.	.
Chr4	6588725	6593808	AT4TE28200	.	+	ATCOPIA7	Copia	LTR	5083	long	5	low	3455051	chromoarm	0	no-CHH	no-CHH	ExpressedAndAnnotated	6588912	6590762	+	transcript_id-"a44c2e5a-e3fe-40e4-9b48-ffbf5c9b7714|11"
Chr4	6595036	6595123	AT4TE28205	.	-	ATHATN2	HAT	DNA	87	tiny	46	low	3461362	chromoarm	558	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	6595439	6595576	AT4TE28210	.	-	ATHAT1	HAT	DNA	137	short	105	medium	3461765	chromoarm	961	DCL3-RdDM	no-RdDM	.	.	.	.	.
Chr4	6595576	6595828	AT4TE28215	.	-	ATTIRTA1	Tc1	DNA	252	short	95	medium	3461902	chromoarm	1098	no-CHH	no-CHH	.	.	.	.	.
Chr4	6596736	6597036	AT4TE28220	.	-	RathE2_cons	.	RathE2_cons	301	short	74	medium	3463061	chromoarm	826	.	.	.	.	.	.	.
Chr4	6598706	6599401	AT4TE28225	.	-	ATREP10B	Helitron	RC	695	short	491	high	3465032	chromoarm	48	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	6599401	6599466	AT4TE28230	.	-	HELITRONY1E	Helitron	RC	65	tiny	447	high	3465727	chromoarm	743	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	6599886	6600102	AT4TE28235	.	-	ATHATN3	HAT	DNA	216	short	70	medium	3466212	chromoarm	1228	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	6624738	6624815	AT4TE28360	.	+	HELITRONY1E	Helitron	RC	77	tiny	447	high	3491064	chromoarm	1426	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	6624815	6626388	AT4TE28365	.	+	ATREP10C	Helitron	RC	1573	short	123	medium	3491141	chromoarm	647	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6626388	6627258	AT4TE28370	.	+	ATREP10D	Helitron	RC	870	short	1295	high	3492714	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	6627505	6627745	AT4TE28375	.	-	ATMU8	MuDR	DNA	240	short	9	low	3493831	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	6627846	6628086	AT4TE28380	.	+	TSCL	.	LINE?	240	short	81	medium	3494172	chromoarm	324	no-CHH	no-CHH	.	.	.	.	.
Chr4	6632619	6633029	AT4TE28400	.	+	HELITRONY1E	Helitron	RC	410	short	447	high	3498945	chromoarm	102	no-CHH	no-CHH	.	.	.	.	.
Chr4	6633029	6633527	AT4TE28405	.	+	ATTIR16T3A	.	DNA	498	short	106	medium	3499355	chromoarm	512	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	6633527	6633791	AT4TE28410	.	-	HELITRONY1D	Helitron	RC	264	short	756	high	3499853	chromoarm	987	no-CHH	no-CHH	.	.	.	.	.
Chr4	6633791	6633821	AT4TE28415	.	+	HELITRONY1E	Helitron	RC	30	tiny	447	high	3500117	chromoarm	957	no-CHH	no-CHH	.	.	.	.	.
Chr4	6638524	6638700	AT4TE28440	.	-	VANDAL8	MuDR	DNA	176	short	123	medium	3504850	chromoarm	1067	no-CHH	no-CHH	.	.	.	.	.
Chr4	6638700	6639576	AT4TE28445	.	+	ATREP14	Helitron	RC	876	short	47	low	3505026	chromoarm	1175	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6639576	6639673	AT4TE28450	.	+	HELITRONY1E	Helitron	RC	97	tiny	447	high	3505902	chromoarm	1078	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	6646887	6647255	AT4TE28490	.	-	ATLINE1_3A	L1	LINE	368	short	160	medium	3513213	chromoarm	656	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	6649869	6649895	AT4TE28500	.	-	ATREP10B	Helitron	RC	26	tiny	491	high	3516195	chromoarm	960	no-CHH	no-CHH	.	.	.	.	.
Chr4	6649895	6650360	AT4TE28505	.	-	ATREP11	Helitron	RC	465	short	841	high	3516221	chromoarm	986	no-CHH	no-CHH	.	.	.	.	.
Chr4	6651883	6651909	AT4TE28510	.	+	ATLINE1_4	L1	LINE	26	tiny	102	medium	3518209	chromoarm	2974	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	6651909	6654609	AT4TE28515	.	+	ATLINE1_4	L1	LINE	2700	medium	102	medium	3518235	chromoarm	2004	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr4	6654609	6654676	AT4TE28520	.	+	ATLINE1A	L1	LINE	67	tiny	289	high	3520935	chromoarm	1937	no-RdDM	no-CHH	.	.	.	.	.
Chr4	6660624	6660987	AT4TE28550	.	-	HELITRONY1D	Helitron	RC	363	short	756	high	3526950	chromoarm	1591	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6660988	6661880	AT4TE28555	.	+	ATREP2	Helitron	RC	892	short	164	medium	3527314	chromoarm	714	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6661880	6661986	AT4TE28560	.	-	ARNOLD3	MuDR	DNA	106	short	45	low	3528206	chromoarm	608	no-CHH	no-CHH	.	.	.	.	.
Chr4	6661986	6662174	AT4TE28565	.	+	ARNOLDY2	MuDR	DNA	188	short	288	high	3528312	chromoarm	420	no-CHH	no-CHH	.	.	.	.	.
Chr4	6665072	6665202	AT4TE28575	.	+	ATENSPM10	En-Spm	DNA	130	short	81	medium	3531398	chromoarm	1611	no-CHH	no-CHH	.	.	.	.	.
Chr4	6670017	6671136	AT4TE28600	.	+	ATDNA2T9A	MuDR	DNA	1119	short	48	low	3536343	chromoarm	3931	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	6671136	6671334	AT4TE28605	.	+	ATDNA2T9C	MuDR	DNA	198	short	242	high	3537462	chromoarm	3733	no-CHH	no-CHH	.	.	.	.	.
Chr4	6674534	6674876	AT4TE28615	.	-	HELITRONY2	Helitron	RC	342	short	198	medium	3540860	chromoarm	191	no-CHH	no-CHH	.	.	.	.	.
Chr4	6677841	6678345	AT4TE28625	.	+	ATDNA12T3_2	.	DNA	504	short	660	high	3544167	chromoarm	554	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6678350	6678393	AT4TE28630	.	+	ATDNA12T3_2	.	DNA	43	tiny	660	high	3544676	chromoarm	506	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6679805	6679837	AT4TE28635	.	-	HELITRONY1B	Helitron	RC	32	tiny	414	high	3546131	chromoarm	369	no-CHH	no-CHH	.	.	.	.	.
Chr4	6679837	6681040	AT4TE28640	.	-	ATREP10D	Helitron	RC	1203	short	1295	high	3546163	chromoarm	401	no-CHH	no-CHH	.	.	.	.	.
Chr4	6681040	6681183	AT4TE28645	.	-	ATLINE1_5	L1	LINE	143	short	91	medium	3547366	chromoarm	1604	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6681586	6682535	AT4TE28650	.	-	ATLINE1_2	L1	LINE	949	short	41	low	3547912	chromoarm	1019	no-CHH	no-CHH	.	.	.	.	.
Chr4	6681844	6682111	AT4TE28655	.	-	TA12	L1	LINE	267	short	.	low	3548170	chromoarm	1443	no-CHH	no-CHH	.	.	.	.	.
Chr4	6682585	6683059	AT4TE28660	.	-	ATREP13	Helitron	RC	474	short	106	medium	3548911	chromoarm	495	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	6683197	6683271	AT4TE28665	.	+	RathE1_cons	.	RathE1_cons	75	tiny	213	high	3549522	chromoarm	283	.	.	.	.	.	.	.
Chr4	6684252	6685475	AT4TE28670	.	-	HELITRONY1B	Helitron	RC	1223	short	414	high	3550578	chromoarm	176	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6685475	6685669	AT4TE28675	.	-	ATREP3	Helitron	RC	194	short	1439	high	3551801	chromoarm	159	PolIV-and-RDR6-RdDM	RDR6-RdDM	.	.	.	.	.
Chr4	6686713	6687109	AT4TE28680	.	-	ATDNA2T9C	MuDR	DNA	396	short	242	high	3553039	chromoarm	366	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	6688561	6688710	AT4TE28685	.	-	ATREP13	Helitron	RC	149	short	106	medium	3554887	chromoarm	122	no-CHH	no-CHH	.	.	.	.	.
Chr4	6688782	6689667	AT4TE28690	.	+	HARBINGER	Harbinger	DNA	885	short	90	medium	3555108	chromoarm	0	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	6694657	6694691	AT4TE28720	.	-	ATREP11	Helitron	RC	34	tiny	841	high	3560983	chromoarm	0	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	6694691	6695716	AT4TE28725	.	-	ATREP15	Helitron	RC	1025	short	1003	high	3561017	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	6700218	6700464	AT4TE28740	.	+	BRODYAGA2	MuDR	DNA	247	short	525	high	3566543	chromoarm	1114	.	.	.	.	.	.	.
Chr4	6700484	6701134	AT4TE28745	.	+	BRODYAGA2	MuDR	DNA	650	short	525	high	3566810	chromoarm	1381	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6701135	6701406	AT4TE28750	.	-	BRODYAGA2	MuDR	DNA	272	short	525	high	3567460	chromoarm	1580	.	.	.	.	.	.	.
Chr4	6719178	6719207	AT4TE28850	.	-	RathE2_cons	.	RathE2_cons	29	tiny	74	medium	3585504	chromoarm	510	RDR6-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	6722293	6723138	AT4TE28860	.	-	HELITRONY1E	Helitron	RC	845	short	447	high	3588619	chromoarm	462	no-CHH	no-CHH	.	.	.	.	.
Chr4	6723138	6723188	AT4TE28865	.	+	ATREP3	Helitron	RC	50	tiny	1439	high	3589464	chromoarm	1307	no-CHH	no-CHH	.	.	.	.	.
Chr4	6723346	6728790	AT4TE28870	.	+	ATCOPIA17	Copia	LTR	5444	long	16	low	3589672	chromoarm	1515	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	6730391	6730785	AT4TE28875	.	+	ATREP10B	Helitron	RC	394	short	491	high	3596717	chromoarm	234	no-RdDM	no-CHH	.	.	.	.	.
Chr4	6730785	6730820	AT4TE28880	.	+	ATREP4	Helitron	RC	35	tiny	832	high	3597111	chromoarm	199	no-CHH	no-RdDM	.	.	.	.	.
Chr4	6748756	6748926	AT4TE28980	.	-	RathE3_cons	.	RathE3_cons	170	short	104	medium	3615082	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6753613	6753673	AT4TE29010	.	-	ATREP3	Helitron	RC	60	tiny	1439	high	3619939	chromoarm	1146	no-CHH	no-CHH	.	.	.	.	.
Chr4	6753673	6754283	AT4TE29015	.	+	BRODYAGA1A	MuDR	DNA	610	short	586	high	3619999	chromoarm	536	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6754283	6754326	AT4TE29020	.	+	ATREP9	Helitron	RC	43	tiny	201	high	3620609	chromoarm	493	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	6754326	6754596	AT4TE29025	.	-	ATREP10A	Helitron	RC	270	short	279	high	3620652	chromoarm	223	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6756590	6757742	AT4TE29035	.	+	ATREP10A	Helitron	RC	1152	short	279	high	3622916	chromoarm	360	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	6757742	6758656	AT4TE29040	.	-	ATREP10B	Helitron	RC	914	short	491	high	3624068	chromoarm	646	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6762537	6762957	AT4TE29060	.	+	ATDNAI27T9B	MuDR	DNA	420	short	43	low	3628863	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	6766248	6767057	AT4TE29070	.	+	ATREP4	Helitron	RC	809	short	832	high	3632574	chromoarm	27	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	6767057	6767702	AT4TE29075	.	+	HELITRONY3	Helitron	RC	645	short	1399	high	3633383	chromoarm	836	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	6771693	6771821	AT4TE29090	.	+	ATENSPM1A	En-Spm	DNA	128	short	77	medium	3638019	chromoarm	341	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	6784789	6785156	AT4TE29160	.	-	ATSINE2A	.	SINE	367	short	33	low	3651115	chromoarm	399	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	6785899	6785986	AT4TE29165	.	+	ATHILA4D_LTR	Gypsy	LTR	87	tiny	106	medium	3652225	chromoarm	1509	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	6788453	6788728	AT4TE29175	.	-	ATDNAI27T9B	MuDR	DNA	275	short	43	low	3654779	chromoarm	4063	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	6789797	6790176	AT4TE29180	.	+	ATREP4	Helitron	RC	380	short	832	high	3656122	chromoarm	4753	.	.	.	.	.	.	.
Chr4	6790178	6790787	AT4TE29185	.	+	ATHPOGON1	Pogo	DNA	609	short	174	medium	3656504	chromoarm	4142	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6790787	6791327	AT4TE29190	.	+	ATREP3	Helitron	RC	540	short	1439	high	3657113	chromoarm	3602	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	6799060	6799739	AT4TE29230	.	+	HELITRON4	Helitron	RC	679	short	199	medium	3665386	chromoarm	351	no-CHH	no-CHH	.	.	.	.	.
Chr4	6807784	6807810	AT4TE29270	.	+	HELITRONY3	Helitron	RC	26	tiny	1399	high	3674110	chromoarm	1058	no-CHH	no-CHH	.	.	.	.	.
Chr4	6807810	6810327	AT4TE29275	.	+	ATREP4	Helitron	RC	2517	medium	832	high	3674136	chromoarm	799	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6810327	6810911	AT4TE29280	.	-	ATREP11	Helitron	RC	584	short	841	high	3676653	chromoarm	215	no-CHH	no-CHH	.	.	.	.	.
Chr4	6811670	6811903	AT4TE29285	.	+	ATHILA7	Gypsy	LTR	233	short	134	medium	3677996	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	6812839	6812989	AT4TE29290	.	-	ATMUNX1	MuDR	DNA	151	short	155	medium	3679164	chromoarm	0	.	.	.	.	.	.	.
Chr4	6814889	6815552	AT4TE29300	.	-	ATREP15	Helitron	RC	663	short	1003	high	3681215	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	6821887	6822043	AT4TE29330	.	-	ATREP10B	Helitron	RC	156	short	491	high	3688213	chromoarm	1281	no-CHH	no-CHH	.	.	.	.	.
Chr4	6822043	6822530	AT4TE29335	.	+	ATHATN3	HAT	DNA	487	short	70	medium	3688369	chromoarm	1437	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr4	6822533	6822827	AT4TE29340	.	-	ATREP10B	Helitron	RC	294	short	491	high	3688859	chromoarm	1927	no-CHH	no-CHH	.	.	.	.	.
Chr4	6822827	6822881	AT4TE29345	.	-	ATREP10	Helitron	RC	54	tiny	63	medium	3689153	chromoarm	2221	no-CHH	no-CHH	.	.	.	.	.
Chr4	6823253	6823381	AT4TE29350	.	+	ATREP10A	Helitron	RC	128	short	279	high	3689579	chromoarm	2647	no-CHH	no-CHH	.	.	.	.	.
Chr4	6823381	6824556	AT4TE29355	.	+	HELITRONY3	Helitron	RC	1175	short	1399	high	3689707	chromoarm	2125	no-CHH	no-CHH	.	.	.	.	.
Chr4	6824755	6824819	AT4TE29360	.	+	HELITRONY1B	Helitron	RC	64	tiny	414	high	3691081	chromoarm	1862	no-CHH	no-CHH	.	.	.	.	.
Chr4	6824819	6825925	AT4TE29365	.	-	ATREP4	Helitron	RC	1106	short	832	high	3691145	chromoarm	756	no-CHH	no-CHH	.	.	.	.	.
Chr4	6825925	6825946	AT4TE29370	.	+	BRODYAGA2	MuDR	DNA	21	tiny	525	high	3692251	chromoarm	735	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr4	6826006	6826054	AT4TE29375	.	+	HELITRONY2	Helitron	RC	48	tiny	198	medium	3692332	chromoarm	627	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	6827790	6828084	AT4TE29380	.	-	ATMU1	MuDR	DNA	294	short	59	medium	3694116	chromoarm	554	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	6830752	6830823	AT4TE29390	.	+	ATREP11	Helitron	RC	71	tiny	841	high	3697078	chromoarm	1867	no-CHH	no-CHH	.	.	.	.	.
Chr4	6830823	6831757	AT4TE29395	.	+	ATREP15	Helitron	RC	934	short	1003	high	3697149	chromoarm	933	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6831758	6831792	AT4TE29400	.	-	BRODYAGA2	MuDR	DNA	35	tiny	525	high	3698083	chromoarm	898	.	.	.	.	.	.	.
Chr4	6831792	6831840	AT4TE29405	.	-	HELITRONY1D	Helitron	RC	48	tiny	756	high	3698118	chromoarm	850	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6845620	6846493	AT4TE29470	.	+	HELITRONY3	Helitron	RC	873	short	1399	high	3711946	chromoarm	33	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6859665	6860614	AT4TE29540	.	-	ATMUN1	MuDR	DNA	949	short	107	medium	3725991	chromoarm	175	no-CHH	no-RdDM	.	.	.	.	.
Chr4	6874492	6874740	AT4TE29620	.	+	RP1_AT	.	DNA	248	short	87	medium	3740818	chromoarm	1032	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6876401	6876828	AT4TE29625	.	-	ATHATN4	HAT	DNA	427	short	56	medium	3742727	chromoarm	2941	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6880118	6880731	AT4TE29635	.	+	ATREP3	Helitron	RC	613	short	1439	high	3746444	chromoarm	2862	no-CHH	no-CHH	.	.	.	.	.
Chr4	6880731	6880854	AT4TE29640	.	-	ATDNA2T9C	MuDR	DNA	123	short	242	high	3747057	chromoarm	2739	no-CHH	no-CHH	.	.	.	.	.
Chr4	6885795	6886461	AT4TE29670	.	-	ATCOPIA42	Copia	LTR	666	short	35	low	3752121	chromoarm	477	no-RdDM	no-CHH	.	.	.	.	.
Chr4	6890437	6890650	AT4TE29690	.	-	RathE3_cons	.	RathE3_cons	213	short	104	medium	3756763	chromoarm	1492	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6894814	6894915	AT4TE29710	.	-	ATREP1	Helitron	RC	101	short	498	high	3761140	chromoarm	0	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	6894915	6895541	AT4TE29715	.	-	ATREP2A	Helitron	RC	626	short	116	medium	3761241	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6895542	6895635	AT4TE29720	.	-	ATREP2A	Helitron	RC	94	tiny	116	medium	3761867	chromoarm	0	.	.	.	.	.	.	.
Chr4	6895635	6895675	AT4TE29725	.	-	ATREP11A	Helitron	RC	40	tiny	95	medium	3761961	chromoarm	0	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	6899746	6899797	AT4TE29740	.	-	HELITRONY1D	Helitron	RC	51	tiny	756	high	3766072	chromoarm	616	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	6899797	6899928	AT4TE29745	.	-	HELITRONY1E	Helitron	RC	131	short	447	high	3766123	chromoarm	667	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6899928	6900798	AT4TE29750	.	-	ATREP10A	Helitron	RC	870	short	279	high	3766254	chromoarm	798	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6900798	6900922	AT4TE29755	.	-	HELITRONY1E	Helitron	RC	124	short	447	high	3767124	chromoarm	791	no-CHH	no-CHH	.	.	.	.	.
Chr4	6906530	6906766	AT4TE29780	.	+	ATREP5	Helitron	RC	236	short	624	high	3772856	chromoarm	0	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	6906766	6907610	AT4TE29785	.	+	ATREP5	Helitron	RC	844	short	624	high	3773092	chromoarm	166	no-CHH	no-CHH	.	.	.	.	.
Chr4	6907628	6907836	AT4TE29790	.	+	ARNOLD2	MuDR	DNA	208	short	68	medium	3773954	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	6908379	6911229	AT4TE29795	.	-	HELITRONY3	Helitron	RC	2850	medium	1399	high	3774705	chromoarm	123	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6911229	6911515	AT4TE29800	.	-	ATREP10B	Helitron	RC	286	short	491	high	3777555	chromoarm	2973	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	6911515	6912710	AT4TE29805	.	-	ATREP10	Helitron	RC	1195	short	63	medium	3777841	chromoarm	3259	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	6912710	6912764	AT4TE29810	.	-	ATREP10B	Helitron	RC	54	tiny	491	high	3779036	chromoarm	4454	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6912764	6912842	AT4TE29815	.	-	ATREP10A	Helitron	RC	78	tiny	279	high	3779090	chromoarm	4508	no-CHH	no-CHH	.	.	.	.	.
Chr4	6912842	6913170	AT4TE29820	.	-	ATREP10D	Helitron	RC	328	short	1295	high	3779168	chromoarm	4586	no-CHH	no-CHH	.	.	.	.	.
Chr4	6913795	6914010	AT4TE29825	.	+	ATIS112A	Harbinger	DNA	215	short	173	medium	3780121	chromoarm	5539	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	6914661	6919511	AT4TE29830	.	-	ATCOPIA22	Copia	LTR	4850	medium	14	low	3780987	chromoarm	1096	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	6914870,6915357,6919425	6914685,6914685,6917583	-,-,-	transcript_id-"99e38d64-fd78-47e7-b4af-1b9dfbee66e7|25",transcript_id-"25f03d89-af07-45b0-b2e2-75b6d18fc0e7|3",transcript_id-"a8713990-28a3-4cdb-9037-059590b311f0|10"
Chr4	6919563	6919599	AT4TE29835	.	-	ATCOPIA22	Copia	LTR	36	tiny	14	low	3785889	chromoarm	1008	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	6920051	6920212	AT4TE29840	.	+	ATIS112A	Harbinger	DNA	161	short	173	medium	3786377	chromoarm	395	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr4	6933595	6933717	AT4TE29910	.	+	ATREP4	Helitron	RC	122	short	832	high	3799921	chromoarm	877	no-CHH	no-CHH	.	.	.	.	.
Chr4	6933717	6934846	AT4TE29915	.	+	ATREP10D	Helitron	RC	1129	short	1295	high	3800043	chromoarm	999	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6935960	6937185	AT4TE29920	.	+	ATLINEIII	L1	LINE	1225	short	196	medium	3802286	chromoarm	1531	no-CHH	no-CHH	.	.	.	.	.
Chr4	6940950	6941181	AT4TE29940	.	+	ATDNATA1	Mariner	DNA	231	short	28	low	3807276	chromoarm	411	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	6943187	6943679	AT4TE29950	.	+	ATDNA2T9C	MuDR	DNA	492	short	242	high	3809513	chromoarm	1447	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	6943679	6944286	AT4TE29955	.	-	ATREP10D	Helitron	RC	607	short	1295	high	3810005	chromoarm	840	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6952541	6952598	AT4TE29990	.	-	ATREP15	Helitron	RC	57	tiny	1003	high	3818867	chromoarm	200	no-CHH	no-CHH	.	.	.	.	.
Chr4	6952598	6952619	AT4TE29995	.	-	ATREP7	Helitron	RC	21	tiny	164	medium	3818924	chromoarm	179	no-CHH	no-CHH	.	.	.	.	.
Chr4	6952619	6953479	AT4TE30000	.	+	HELITRONY3	Helitron	RC	860	short	1399	high	3818945	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	6961949	6962088	AT4TE30050	.	-	ATDNAI27T9C	MuDR	DNA	139	short	108	medium	3828275	chromoarm	726	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	6970699	6970870	AT4TE30100	.	+	ATDNA12T3_2	.	DNA	171	short	660	high	3837025	chromoarm	537	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr4	6974753	6975230	AT4TE30120	.	+	HELITRONY1D	Helitron	RC	477	short	756	high	3841079	chromoarm	51	no-CHH	no-CHH	ExpressedAndAnnotated	6976043	6975056	-	transcript_id-"0f90432d-ff2c-4e4e-aa2c-89bab19c21b2|18"
Chr4	6975230	6975306	AT4TE30125	.	-	BRODYAGA1A	MuDR	DNA	76	tiny	586	high	3841556	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	6975553	6975982	AT4TE30130	.	-	ATREP19	.	DNA	429	short	189	medium	3841879	chromoarm	0	no-CHH	no-CHH	ExpressedAndAnnotated	6976043	6975056	-	transcript_id-"0f90432d-ff2c-4e4e-aa2c-89bab19c21b2|18"
Chr4	6984683	6984980	AT4TE30180	.	+	ATREP10D	Helitron	RC	297	short	1295	high	3851009	chromoarm	375	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	6992608	6992628	AT4TE30220	.	-	ATCOPIA57	Copia	LTR	20	tiny	48	low	3858934	chromoarm	53	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	6992628	6994363	AT4TE30225	.	-	ATCOPIA57	Copia	LTR	1735	short	48	low	3858954	chromoarm	73	no-CHH	no-CHH	ExpressedAndAnnotated	6992957	6992685	-	transcript_id-"bc2eb67f-b2f3-4791-90e3-0acbb82d9735|3"
Chr4	6993929	6994045	AT4TE30230	.	+	ARNOLD2	MuDR	DNA	116	short	68	medium	3860255	chromoarm	1374	no-CHH	no-CHH	.	.	.	.	.
Chr4	6995628	6995903	AT4TE30235	.	-	ATLINEIII	L1	LINE	275	short	196	medium	3861954	chromoarm	919	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	7003460	7003936	AT4TE30270	.	-	ATREP3	Helitron	RC	476	short	1439	high	3869786	chromoarm	15	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	7011696	7012856	AT4TE30310	.	-	VANDALNX2	MuDR	DNA	1160	short	37	low	3878022	chromoarm	366	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7012856	7012910	AT4TE30315	.	-	ATDNA2T9C	MuDR	DNA	54	tiny	242	high	3879182	chromoarm	1045	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7027938	7028334	AT4TE30390	.	-	ATREP10A	Helitron	RC	396	short	279	high	3894264	chromoarm	1825	no-CHH	no-CHH	.	.	.	.	.
Chr4	7028334	7028429	AT4TE30395	.	-	BRODYAGA1A	MuDR	DNA	95	tiny	586	high	3894660	chromoarm	2221	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7028429	7028539	AT4TE30400	.	+	ATREP4	Helitron	RC	110	short	832	high	3894755	chromoarm	2316	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7028539	7028708	AT4TE30405	.	-	ATDNAI27T9B	MuDR	DNA	169	short	43	low	3894865	chromoarm	2426	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7029422	7029476	AT4TE30410	.	+	ATDNAI26T9	MuDR	DNA	54	tiny	25	low	3895748	chromoarm	3309	no-CHH	no-RdDM	.	.	.	.	.
Chr4	7029508	7029939	AT4TE30415	.	-	ATDNAI27T9C	MuDR	DNA	431	short	108	medium	3895834	chromoarm	3395	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	7030208	7030311	AT4TE30420	.	-	VANDAL5A	MuDR	DNA	103	short	56	medium	3896534	chromoarm	4095	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7030311	7030464	AT4TE30425	.	-	VANDAL5	MuDR	DNA	153	short	85	medium	3896637	chromoarm	4198	PolIV-and-RDR6-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	7030896	7031032	AT4TE30430	.	-	VANDAL4	MuDR	DNA	136	short	102	medium	3897222	chromoarm	4783	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	7031032	7031138	AT4TE30435	.	-	VANDAL5A	MuDR	DNA	106	short	56	medium	3897358	chromoarm	4919	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	7031138	7032281	AT4TE30440	.	-	VANDAL5A	MuDR	DNA	1143	short	56	medium	3897464	chromoarm	4804	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7032281	7032552	AT4TE30445	.	-	VANDAL5	MuDR	DNA	271	short	85	medium	3898607	chromoarm	4533	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7032552	7034348	AT4TE30450	.	+	ATREP4	Helitron	RC	1796	short	832	high	3898878	chromoarm	2737	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7034348	7034984	AT4TE30455	.	-	ATREP2	Helitron	RC	636	short	164	medium	3900674	chromoarm	2101	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7034984	7035399	AT4TE30460	.	+	ATREP4	Helitron	RC	415	short	832	high	3901310	chromoarm	1686	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	7037327	7037987	AT4TE30470	.	-	ATREP15	Helitron	RC	660	short	1003	high	3903653	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	7037987	7038080	AT4TE30475	.	-	ATHILA8A	Gypsy	LTR	93	tiny	97	medium	3904313	chromoarm	509	no-CHH	no-CHH	.	.	.	.	.
Chr4	7038889	7039272	AT4TE30480	.	-	ATREP19	.	DNA	383	short	189	medium	3905215	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	7040258	7040335	AT4TE30485	.	+	RathE2_cons	.	RathE2_cons	77	tiny	74	medium	3906584	chromoarm	499	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	7040602	7042300	AT4TE30490	.	-	ATREP10D	Helitron	RC	1698	short	1295	high	3906928	chromoarm	705	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	7042300	7042360	AT4TE30495	.	+	HELITRONY3	Helitron	RC	60	tiny	1399	high	3908626	chromoarm	645	no-CHH	no-CHH	.	.	.	.	.
Chr4	7042360	7042415	AT4TE30500	.	+	ATREP3	Helitron	RC	55	tiny	1439	high	3908686	chromoarm	590	no-CHH	no-CHH	.	.	.	.	.
Chr4	7058637	7058984	AT4TE30590	.	-	ATREP3	Helitron	RC	347	short	1439	high	3924963	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7058984	7059607	AT4TE30595	.	+	ATHATN7	HAT	DNA	623	short	71	medium	3925310	chromoarm	347	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7059608	7059644	AT4TE30600	.	-	ATREP4	Helitron	RC	37	tiny	832	high	3925933	chromoarm	970	.	.	.	.	.	.	.
Chr4	7059644	7059748	AT4TE30605	.	-	ATREP5	Helitron	RC	104	short	624	high	3925970	chromoarm	1007	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7059748	7060679	AT4TE30610	.	-	ATREP3	Helitron	RC	931	short	1439	high	3926074	chromoarm	1111	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	7060679	7060717	AT4TE30615	.	-	ATREP3	Helitron	RC	38	tiny	1439	high	3927005	chromoarm	2042	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	7060717	7060740	AT4TE30620	.	+	BRODYAGA2	MuDR	DNA	23	tiny	525	high	3927043	chromoarm	2080	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	7061022	7062440	AT4TE30625	.	-	ATLINEIII	L1	LINE	1418	short	196	medium	3927348	chromoarm	850	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	7063900	7064003	AT4TE30630	.	+	RathE3_cons	.	RathE3_cons	103	short	104	medium	3930226	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	7067286	7067605	AT4TE30640	.	-	DT1	Mariner	DNA	319	short	123	medium	3933612	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7080124	7080785	AT4TE30710	.	+	ATREP11	Helitron	RC	661	short	841	high	3946450	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	7083535	7083562	AT4TE30720	.	+	ATREP10D	Helitron	RC	27	tiny	1295	high	3949861	chromoarm	66	no-CHH	no-CHH	.	.	.	.	.
Chr4	7083562	7085792	AT4TE30725	.	-	HELITRONY3	Helitron	RC	2230	medium	1399	high	3949888	chromoarm	93	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7084026	7084701	AT4TE30730	.	-	ATN9_1	MuDR	DNA	675	short	65	medium	3950352	chromoarm	557	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7084706	7085268	AT4TE30735	.	-	TNAT1A	.	DNA	562	short	162	medium	3951032	chromoarm	701	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	7085268	7085384	AT4TE30740	.	-	TNAT1A	.	DNA	116	short	162	medium	3951594	chromoarm	585	no-CHH	no-CHH	.	.	.	.	.
Chr4	7089369	7089906	AT4TE30760	.	+	ATCOPIA66	Copia	LTR	538	short	20	low	3955694	chromoarm	549	.	.	.	.	.	.	.
Chr4	7100265	7100538	AT4TE30820	.	-	ATCOPIA80	Copia	LTR	273	short	7	low	3966591	chromoarm	1746	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7101187	7101225	AT4TE30825	.	-	SIMPLEGUY1	Harbinger	DNA	38	tiny	116	medium	3967513	chromoarm	2668	no-CHH	no-CHH	.	.	.	.	.
Chr4	7101225	7102618	AT4TE30830	.	-	SIMPLEGUY1	Harbinger	DNA	1393	short	116	medium	3967551	chromoarm	2706	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7112690	7113694	AT4TE30880	.	+	ATREP5	Helitron	RC	1004	short	624	high	3979016	chromoarm	789	no-CHH	no-CHH	.	.	.	.	.
Chr4	7114274	7114398	AT4TE30885	.	-	BRODYAGA2	MuDR	DNA	124	short	525	high	3980600	chromoarm	1586	no-CHH	no-CHH	.	.	.	.	.
Chr4	7114398	7114733	AT4TE30890	.	+	BRODYAGA1A	MuDR	DNA	335	short	586	high	3980724	chromoarm	1251	no-CHH	no-CHH	.	.	.	.	.
Chr4	7128154	7128245	AT4TE30960	.	+	HELITRONY3A	Helitron	RC	91	tiny	49	low	3994480	chromoarm	82	no-CHH	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	7136356	7136526	AT4TE31000	.	+	ATDNAI27T9A	MuDR	DNA	170	short	116	medium	4002682	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	7137517	7137616	AT4TE31005	.	-	ATDNAI27T9A	MuDR	DNA	99	tiny	116	medium	4003843	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	7140521	7140655	AT4TE31015	.	+	VANDAL21	MuDR	DNA	134	short	64	medium	4006847	chromoarm	0	no-CHH	RDR6-RdDM	.	.	.	.	.
Chr4	7147822	7147973	AT4TE31050	.	+	HELITRONY1D	Helitron	RC	151	short	756	high	4014148	chromoarm	295	no-CHH	no-CHH	.	.	.	.	.
Chr4	7150025	7150195	AT4TE31060	.	+	RathE1_cons	.	RathE1_cons	170	short	213	high	4016351	chromoarm	45	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	7153853	7154515	AT4TE31070	.	+	TNAT1A	.	DNA	662	short	162	medium	4020179	chromoarm	311	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	7154515	7154676	AT4TE31075	.	+	ATREP3	Helitron	RC	161	short	1439	high	4020841	chromoarm	973	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	7154676	7155785	AT4TE31080	.	+	ATREP2A	Helitron	RC	1109	short	116	medium	4021002	chromoarm	649	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7155785	7155880	AT4TE31085	.	+	ATHPOGON2	Pogo	DNA	95	tiny	27	low	4022111	chromoarm	554	no-CHH	no-CHH	.	.	.	.	.
Chr4	7155880	7155934	AT4TE31090	.	+	ATHPOGON1	Pogo	DNA	54	tiny	174	medium	4022206	chromoarm	500	no-CHH	no-CHH	.	.	.	.	.
Chr4	7155934	7156033	AT4TE31095	.	+	HELITRONY1E	Helitron	RC	99	tiny	447	high	4022260	chromoarm	401	no-CHH	no-CHH	.	.	.	.	.
Chr4	7163631	7163970	AT4TE31130	.	+	HELITRONY2	Helitron	RC	339	short	198	medium	4029957	chromoarm	374	no-CHH	no-CHH	.	.	.	.	.
Chr4	7163970	7164716	AT4TE31135	.	-	BRODYAGA2	MuDR	DNA	746	short	525	high	4030296	chromoarm	187	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	7164716	7164802	AT4TE31140	.	+	ATREP4	Helitron	RC	86	tiny	832	high	4031042	chromoarm	101	no-CHH	no-CHH	.	.	.	.	.
Chr4	7164802	7164831	AT4TE31145	.	+	ATREP3	Helitron	RC	29	tiny	1439	high	4031128	chromoarm	72	no-CHH	no-RdDM	.	.	.	.	.
Chr4	7167543	7167568	AT4TE31155	.	+	BRODYAGA1A	MuDR	DNA	25	tiny	586	high	4033869	chromoarm	604	no-CHH	no-CHH	.	.	.	.	.
Chr4	7167568	7168041	AT4TE31160	.	-	ATREP10D	Helitron	RC	473	short	1295	high	4033894	chromoarm	131	no-CHH	no-CHH	.	.	.	.	.
Chr4	7169815	7170093	AT4TE31165	.	-	ATLINE1_3A	L1	LINE	278	short	160	medium	4036141	chromoarm	848	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	7170162	7170233	AT4TE31170	.	-	HELITRONY3	Helitron	RC	71	tiny	1399	high	4036488	chromoarm	1195	no-RdDM	no-CHH	.	.	.	.	.
Chr4	7170233	7170720	AT4TE31175	.	+	ATREP10B	Helitron	RC	487	short	491	high	4036559	chromoarm	1266	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	7170720	7171498	AT4TE31180	.	-	ATREP10D	Helitron	RC	778	short	1295	high	4037046	chromoarm	1753	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7171498	7171585	AT4TE31185	.	+	ATREP15	Helitron	RC	87	tiny	1003	high	4037824	chromoarm	1690	no-CHH	no-CHH	.	.	.	.	.
Chr4	7177951	7178615	AT4TE31210	.	-	BRODYAGA2	MuDR	DNA	664	short	525	high	4044277	chromoarm	242	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	7178778	7179106	AT4TE31215	.	+	ATCOPIA24	Copia	LTR	329	short	27	low	4045103	chromoarm	1068	.	.	.	.	.	.	.
Chr4	7179127	7179748	AT4TE31220	.	+	ATREP9	Helitron	RC	621	short	201	high	4045453	chromoarm	1418	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7179748	7179770	AT4TE31225	.	-	BRODYAGA2	MuDR	DNA	22	tiny	525	high	4046074	chromoarm	1452	no-CHH	no-CHH	.	.	.	.	.
Chr4	7190496	7190517	AT4TE31280	.	+	ATREP10A	Helitron	RC	21	tiny	279	high	4056822	chromoarm	807	no-CHH	no-CHH	.	.	.	.	.
Chr4	7190517	7190816	AT4TE31285	.	+	ATREP3	Helitron	RC	299	short	1439	high	4056843	chromoarm	828	no-CHH	no-CHH	.	.	.	.	.
Chr4	7190823	7191580	AT4TE31290	.	+	ATHPOGON3	Pogo	DNA	757	short	118	medium	4057149	chromoarm	1134	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7191580	7191619	AT4TE31295	.	+	HELITRONY1E	Helitron	RC	39	tiny	447	high	4057906	chromoarm	1891	no-CHH	no-RdDM	.	.	.	.	.
Chr4	7191619	7192263	AT4TE31300	.	-	ATREP10C	Helitron	RC	644	short	123	medium	4057945	chromoarm	1263	no-CHH	no-CHH	.	.	.	.	.
Chr4	7195126	7195172	AT4TE31310	.	-	ATREP15	Helitron	RC	46	tiny	1003	high	4061452	chromoarm	184	no-CHH	no-CHH	.	.	.	.	.
Chr4	7195172	7195373	AT4TE31315	.	-	ATREP15	Helitron	RC	201	short	1003	high	4061498	chromoarm	230	no-CHH	no-CHH	.	.	.	.	.
Chr4	7195373	7196221	AT4TE31320	.	+	ATREP3	Helitron	RC	848	short	1439	high	4061699	chromoarm	431	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7196221	7196273	AT4TE31325	.	+	ATREP1	Helitron	RC	52	tiny	498	high	4062547	chromoarm	432	no-CHH	no-CHH	.	.	.	.	.
Chr4	7210077	7210232	AT4TE31390	.	+	ATHATN1	HAT	DNA	155	short	69	medium	4076403	chromoarm	608	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr4	7213534	7213921	AT4TE31400	.	-	ATREP10A	Helitron	RC	387	short	279	high	4079860	chromoarm	821	no-CHH	no-CHH	.	.	.	.	.
Chr4	7213925	7214378	AT4TE31405	.	+	ATHATN3	HAT	DNA	453	short	70	medium	4080251	chromoarm	962	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	7216830	7216861	AT4TE31415	.	-	HELITRONY3	Helitron	RC	31	tiny	1399	high	4083156	chromoarm	962	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	7216861	7217123	AT4TE31420	.	+	ATREP3	Helitron	RC	262	short	1439	high	4083187	chromoarm	993	no-CHH	no-CHH	.	.	.	.	.
Chr4	7217123	7219127	AT4TE31425	.	-	HELITRONY1A	Helitron	RC	2004	medium	271	high	4083449	chromoarm	1011	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7219127	7219233	AT4TE31430	.	-	HELITRONY1A	Helitron	RC	106	short	271	high	4085453	chromoarm	905	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	7219233	7219778	AT4TE31435	.	+	HELITRONY1E	Helitron	RC	545	short	447	high	4085559	chromoarm	360	no-CHH	no-CHH	.	.	.	.	.
Chr4	7219778	7219877	AT4TE31440	.	+	ATREP3	Helitron	RC	99	tiny	1439	high	4086104	chromoarm	261	no-CHH	no-CHH	.	.	.	.	.
Chr4	7219877	7220119	AT4TE31445	.	+	ATREP11A	Helitron	RC	242	short	95	medium	4086203	chromoarm	19	no-CHH	no-CHH	.	.	.	.	.
Chr4	7224075	7225182	AT4TE31460	.	+	ATREP11	Helitron	RC	1107	short	841	high	4090401	chromoarm	2917	no-CHH	no-CHH	.	.	.	.	.
Chr4	7225722	7226160	AT4TE31465	.	+	ATLINE1_5	L1	LINE	438	short	91	medium	4092048	chromoarm	2108	no-CHH	no-CHH	.	.	.	.	.
Chr4	7230250	7230567	AT4TE31480	.	-	ATREP5	Helitron	RC	317	short	624	high	4096576	chromoarm	352	no-CHH	no-CHH	.	.	.	.	.
Chr4	7230567	7231820	AT4TE31485	.	+	ATREP1	Helitron	RC	1253	short	498	high	4096893	chromoarm	120	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7231820	7231916	AT4TE31490	.	+	HELITRONY1A	Helitron	RC	96	tiny	271	high	4098146	chromoarm	24	no-CHH	no-CHH	.	.	.	.	.
Chr4	7234675	7236692	AT4TE31500	.	+	ATREP10B	Helitron	RC	2017	medium	491	high	4101001	chromoarm	403	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7236692	7237941	AT4TE31505	.	+	ATREP10D	Helitron	RC	1249	short	1295	high	4103018	chromoarm	1524	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7238618	7239350	AT4TE31510	.	-	HELITRONY3	Helitron	RC	732	short	1399	high	4104944	chromoarm	115	no-CHH	no-CHH	.	.	.	.	.
Chr4	7245314	7246069	AT4TE31540	.	+	HELITRONY1E	Helitron	RC	755	short	447	high	4111640	chromoarm	383	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	7251021	7251141	AT4TE31570	.	-	ATREP1	Helitron	RC	120	short	498	high	4117347	chromoarm	2894	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7251142	7251894	AT4TE31575	.	-	HELITRONY1B	Helitron	RC	752	short	414	high	4117468	chromoarm	2302	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	7251894	7253199	AT4TE31580	.	-	ATREP3	Helitron	RC	1305	short	1439	high	4118220	chromoarm	997	no-CHH	no-CHH	.	.	.	.	.
Chr4	7253199	7253479	AT4TE31585	.	+	ATREP4	Helitron	RC	280	short	832	high	4119525	chromoarm	717	no-CHH	no-CHH	.	.	.	.	.
Chr4	7254654	7254743	AT4TE31590	.	+	RathE1_cons	.	RathE1_cons	89	tiny	213	high	4120980	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	7256412	7256466	AT4TE31595	.	+	ATLINEIII	L1	LINE	54	tiny	196	medium	4122738	chromoarm	220	no-CHH	no-CHH	.	.	.	.	.
Chr4	7261477	7262046	AT4TE31620	.	+	BRODYAGA1A	MuDR	DNA	569	short	586	high	4127803	chromoarm	563	no-CHH	no-CHH	.	.	.	.	.
Chr4	7265941	7266266	AT4TE31640	.	+	ATCOPIA74	Copia	LTR	325	short	7	low	4132267	chromoarm	279	no-CHH	no-CHH	.	.	.	.	.
Chr4	7267243	7267489	AT4TE31645	.	-	ATREP10D	Helitron	RC	246	short	1295	high	4133569	chromoarm	89	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7267489	7268579	AT4TE31650	.	+	ATREP10B	Helitron	RC	1090	short	491	high	4133815	chromoarm	257	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	7270619	7270948	AT4TE31660	.	-	ATLINE2	L1	LINE	329	short	138	medium	4136945	chromoarm	352	no-CHH	no-CHH	.	.	.	.	.
Chr4	7271052	7271950	AT4TE31665	.	-	ATLINEIII	L1	LINE	898	short	196	medium	4137378	chromoarm	785	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	7273457	7273846	AT4TE31670	.	-	ATDNA2T9C	MuDR	DNA	389	short	242	high	4139783	chromoarm	150	no-CHH	no-CHH	.	.	.	.	.
Chr4	7275811	7278087	AT4TE31680	.	+	ATLINEIII	L1	LINE	2276	medium	196	medium	4142137	chromoarm	457	no-CHH	no-CHH	.	.	.	.	.
Chr4	7279792	7280003	AT4TE31685	.	+	ATCOPIA74	Copia	LTR	211	short	7	low	4146118	chromoarm	1032	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	7280003	7280500	AT4TE31690	.	+	ATCOPIA56	Copia	LTR	497	short	16	low	4146329	chromoarm	807	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	7284065	7284288	AT4TE31700	.	-	ATLINE1A	L1	LINE	223	short	289	high	4150391	chromoarm	326	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7290979	7292150	AT4TE31740	.	+	ATREP10D	Helitron	RC	1171	short	1295	high	4157305	chromoarm	131	no-CHH	no-CHH	.	.	.	.	.
Chr4	7292237	7293752	AT4TE31745	.	-	ATHAT3	HAT	DNA	1515	short	23	low	4158563	chromoarm	1389	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	7293872	7294436	AT4TE31750	.	+	ATTIR16T3A	.	DNA	564	short	106	medium	4160198	chromoarm	3024	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	7294436	7294727	AT4TE31755	.	+	ATREP3	Helitron	RC	291	short	1439	high	4160762	chromoarm	3080	no-RdDM	no-CHH	.	.	.	.	.
Chr4	7299575	7299607	AT4TE31780	.	+	ATMUNX1	MuDR	DNA	32	tiny	155	medium	4165901	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	7299607	7299784	AT4TE31785	.	-	ATMUNX1	MuDR	DNA	177	short	155	medium	4165933	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	7300395	7301656	AT4TE31790	.	-	ATLINE1_1	L1	LINE	1261	short	61	medium	4166721	chromoarm	112	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7303686	7304064	AT4TE31800	.	+	ATCOPIA48	Copia	LTR	378	short	15	low	4170012	chromoarm	369	no-CHH	no-CHH	.	.	.	.	.
Chr4	7313185	7313863	AT4TE31850	.	+	ATREP4	Helitron	RC	678	short	832	high	4179511	chromoarm	663	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	7313213	7313611	AT4TE31855	.	+	TNAT2A	.	DNA	398	short	38	low	4179539	chromoarm	691	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	7322673	7323027	AT4TE31900	.	-	RathE2_cons	.	RathE2_cons	354	short	74	medium	4188999	chromoarm	669	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7325414	7325902	AT4TE31910	.	+	ATREP19	.	DNA	488	short	189	medium	4191740	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	7326911	7327482	AT4TE31915	.	-	HELITRONY1D	Helitron	RC	571	short	756	high	4193237	chromoarm	275	no-CHH	no-CHH	.	.	.	.	.
Chr4	7329830	7329912	AT4TE31925	.	+	RathE1_cons	.	RathE1_cons	82	tiny	213	high	4196156	chromoarm	726	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7330023	7330171	AT4TE31930	.	-	ATLINE1_6	L1	LINE	149	short	129	medium	4196348	chromoarm	918	.	.	.	.	.	.	.
Chr4	7342164	7342979	AT4TE31990	.	+	ATREP10D	Helitron	RC	815	short	1295	high	4208490	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	7346660	7346926	AT4TE32000	.	-	ATREP6	Helitron	RC	266	short	181	medium	4212986	chromoarm	3014	no-CHH	no-CHH	.	.	.	.	.
Chr4	7346926	7347345	AT4TE32005	.	-	ATREP13	Helitron	RC	419	short	106	medium	4213252	chromoarm	2595	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7347345	7348719	AT4TE32010	.	-	ATREP7	Helitron	RC	1374	short	164	medium	4213671	chromoarm	1221	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7348719	7348862	AT4TE32015	.	-	ATREP10D	Helitron	RC	143	short	1295	high	4215045	chromoarm	1078	no-CHH	no-CHH	.	.	.	.	.
Chr4	7357021	7357130	AT4TE32050	.	+	ATDNAI27T9A	MuDR	DNA	109	short	116	medium	4223347	chromoarm	4153	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	7358394	7358606	AT4TE32055	.	+	ATCOPIA3	Copia	LTR	212	short	8	low	4224720	chromoarm	5526	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr4	7359462	7364607	AT4TE32060	.	+	META1	Copia	LTR	5145	long	138	medium	4225788	chromoarm	872	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	7359587,7359587	7360436,7360673	+,+	transcript_id-"0c48bf30-b94f-43ff-b434-5d8349520f89|6",transcript_id-"86d79936-0bd7-4f98-8fe0-9247759e0534|3"
Chr4	7364608	7364709	AT4TE32065	.	+	ARNOLDY1	MuDR	DNA	102	short	237	high	4230933	chromoarm	770	.	.	.	.	.	.	.
Chr4	7364709	7365578	AT4TE32070	.	+	ARNOLDY2	MuDR	DNA	869	short	288	high	4231035	chromoarm	0	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	7372518	7373101	AT4TE32110	.	+	BRODYAGA2	MuDR	DNA	583	short	525	high	4238844	chromoarm	3166	no-CHH	no-CHH	.	.	.	.	.
Chr4	7374379	7375328	AT4TE32115	.	-	ATREP15	Helitron	RC	949	short	1003	high	4240705	chromoarm	939	no-CHH	no-CHH	.	.	.	.	.
Chr4	7375500	7375587	AT4TE32120	.	-	ATHAT1	HAT	DNA	87	tiny	105	medium	4241826	chromoarm	680	no-RdDM	no-CHH	.	.	.	.	.
Chr4	7382903	7383088	AT4TE32160	.	-	HELITRONY1E	Helitron	RC	185	short	447	high	4249229	chromoarm	2752	no-CHH	no-CHH	.	.	.	.	.
Chr4	7383088	7384294	AT4TE32165	.	-	ATREP1	Helitron	RC	1206	short	498	high	4249414	chromoarm	1546	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7384294	7385843	AT4TE32170	.	-	ATREP10D	Helitron	RC	1549	short	1295	high	4250620	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	7387335	7388424	AT4TE32175	.	+	HELITRONY3	Helitron	RC	1089	short	1399	high	4253661	chromoarm	661	no-CHH	no-CHH	.	.	.	.	.
Chr4	7388435	7388733	AT4TE32180	.	-	TAT1_ATH	Gypsy	LTR	298	short	87	medium	4254761	chromoarm	1761	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	7389648	7391071	AT4TE32185	.	+	ATSINE2A	.	SINE	1423	short	33	low	4255974	chromoarm	328	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	7389676,7390565	7391069,7390946	+,+	transcript_id-"373303ae-5842-4c98-88c4-5607943cdcf0|24",transcript_id-"130dfd29-9b5c-4092-ab34-0d017326fb26|3"
Chr4	7396777	7396866	AT4TE32210	.	+	DT1	Mariner	DNA	89	tiny	123	medium	4263103	chromoarm	721	no-CHH	no-CHH	.	.	.	.	.
Chr4	7398976	7399633	AT4TE32220	.	-	HELITRONY1D	Helitron	RC	657	short	756	high	4265302	chromoarm	1737	no-CHH	no-CHH	.	.	.	.	.
Chr4	7403742	7403812	AT4TE32240	.	+	ATREP4	Helitron	RC	70	tiny	832	high	4270068	chromoarm	1886	no-CHH	no-CHH	.	.	.	.	.
Chr4	7403812	7405044	AT4TE32245	.	+	ATREP10D	Helitron	RC	1232	short	1295	high	4270138	chromoarm	1326	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7405044	7405111	AT4TE32250	.	+	ATREP4	Helitron	RC	67	tiny	832	high	4271370	chromoarm	1259	no-CHH	no-CHH	.	.	.	.	.
Chr4	7408087	7408829	AT4TE32260	.	+	ARNOLDY2	MuDR	DNA	742	short	288	high	4274413	chromoarm	1000	no-CHH	no-CHH	.	.	.	.	.
Chr4	7410492	7411292	AT4TE32265	.	-	ATREP4	Helitron	RC	800	short	832	high	4276818	chromoarm	114	no-CHH	no-CHH	.	.	.	.	.
Chr4	7416150	7416617	AT4TE32290	.	-	ATLINE1_3A	L1	LINE	467	short	160	medium	4282476	chromoarm	796	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7417934	7419008	AT4TE32295	.	-	ATREP15	Helitron	RC	1074	short	1003	high	4284260	chromoarm	131	no-CHH	no-CHH	.	.	.	.	.
Chr4	7419008	7419119	AT4TE32300	.	+	ATREP10D	Helitron	RC	111	short	1295	high	4285334	chromoarm	1205	no-CHH	no-CHH	.	.	.	.	.
Chr4	7419746	7420455	AT4TE32305	.	+	ATDNA12T3_2	.	DNA	709	short	660	high	4286072	chromoarm	823	no-CHH	no-CHH	.	.	.	.	.
Chr4	7421980	7422108	AT4TE32310	.	-	ATREP10D	Helitron	RC	129	short	1295	high	4288305	chromoarm	311	.	.	.	.	.	.	.
Chr4	7422108	7424541	AT4TE32315	.	-	ATREP3	Helitron	RC	2433	medium	1439	high	4288434	chromoarm	440	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	7424941	7425167	AT4TE32320	.	-	HELITRONY1D	Helitron	RC	226	short	756	high	4291267	chromoarm	2973	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr4	7425167	7425563	AT4TE32325	.	-	HELITRONY1D	Helitron	RC	396	short	756	high	4291493	chromoarm	2577	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7425563	7427007	AT4TE32330	.	-	HELITRONY1D	Helitron	RC	1444	short	756	high	4291889	chromoarm	1133	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7427007	7427261	AT4TE32335	.	+	ATREP11	Helitron	RC	254	short	841	high	4293333	chromoarm	879	no-CHH	no-CHH	.	.	.	.	.
Chr4	7427261	7427462	AT4TE32340	.	+	ATREP10D	Helitron	RC	201	short	1295	high	4293587	chromoarm	678	no-CHH	no-CHH	.	.	.	.	.
Chr4	7432012	7432320	AT4TE32360	.	+	ATREP3	Helitron	RC	308	short	1439	high	4298338	chromoarm	410	no-CHH	no-CHH	.	.	.	.	.
Chr4	7432387	7432769	AT4TE32365	.	+	ATLINE1A	L1	LINE	382	short	289	high	4298713	chromoarm	785	no-CHH	no-CHH	.	.	.	.	.
Chr4	7434970	7435132	AT4TE32375	.	+	ATREP16	MuDR	DNA	162	short	47	low	4301296	chromoarm	384	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7435472	7435699	AT4TE32380	.	+	ATLINE1A	L1	LINE	227	short	289	high	4301798	chromoarm	886	no-CHH	no-CHH	.	.	.	.	.
Chr4	7437501	7437847	AT4TE32385	.	+	ATHATN4	HAT	DNA	346	short	56	medium	4303827	chromoarm	1328	no-CHH	no-CHH	.	.	.	.	.
Chr4	7437847	7438030	AT4TE32390	.	+	ATREP15	Helitron	RC	183	short	1003	high	4304173	chromoarm	1145	no-CHH	no-CHH	.	.	.	.	.
Chr4	7438030	7438811	AT4TE32395	.	-	ATHPOGON1	Pogo	DNA	781	short	174	medium	4304356	chromoarm	364	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7438811	7439134	AT4TE32400	.	+	HELITRONY3	Helitron	RC	323	short	1399	high	4305137	chromoarm	41	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	7443546	7443633	AT4TE32420	.	+	BRODYAGA2	MuDR	DNA	87	tiny	525	high	4309872	chromoarm	389	no-CHH	no-CHH	.	.	.	.	.
Chr4	7443633	7444600	AT4TE32425	.	+	ATREP10D	Helitron	RC	967	short	1295	high	4309959	chromoarm	476	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7470757	7471932	AT4TE32560	.	-	HELITRONY1D	Helitron	RC	1175	short	756	high	4337083	chromoarm	592	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	7490127	7490736	AT4TE32660	.	+	TNAT1A	.	DNA	610	short	162	medium	4356452	chromoarm	569	.	.	.	.	.	.	.
Chr4	7490736	7490873	AT4TE32665	.	+	TNAT1A	.	DNA	137	short	162	medium	4357062	chromoarm	724	no-RdDM	no-CHH	.	.	.	.	.
Chr4	7497200	7497371	AT4TE32690	.	+	ATCOPIA26	Copia	LTR	171	short	19	low	4363526	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	7506386	7506605	AT4TE32740	.	-	HELITRONY1C	Helitron	RC	219	short	120	medium	4372712	chromoarm	130	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	7516793	7516993	AT4TE32800	.	+	HELITRONY1C	Helitron	RC	200	short	120	medium	4383119	chromoarm	138	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	7519614	7519971	AT4TE32810	.	-	ATMUNX1	MuDR	DNA	357	short	155	medium	4385940	chromoarm	722	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7519971	7520914	AT4TE32815	.	+	ATLINEIII	L1	LINE	943	short	196	medium	4386297	chromoarm	554	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	7524125	7524553	AT4TE32825	.	-	ATHATN4	HAT	DNA	428	short	56	medium	4390451	chromoarm	146	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7524723	7525013	AT4TE32830	.	+	ATDNAI27T9B	MuDR	DNA	290	short	43	low	4391049	chromoarm	744	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	7526503	7524735	-	transcript_id-"e45c3cc9-93bd-48af-b14a-17b284d47bd3|7"
Chr4	7525027	7526697	AT4TE32835	.	+	ATDNAI27T9C	MuDR	DNA	1670	short	108	medium	4391353	chromoarm	350	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	7526503	7524735	-	transcript_id-"e45c3cc9-93bd-48af-b14a-17b284d47bd3|7"
Chr4	7539950	7540149	AT4TE32900	.	-	ATHATN3	HAT	DNA	199	short	70	medium	4406276	chromoarm	1048	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	7554011	7554326	AT4TE32970	.	+	ATLINE1A	L1	LINE	315	short	289	high	4420337	chromoarm	960	no-CHH	no-CHH	.	.	.	.	.
Chr4	7554326	7556090	AT4TE32975	.	+	ATREP9	Helitron	RC	1764	short	201	high	4420652	chromoarm	1275	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7556090	7556122	AT4TE32980	.	+	ATREP7	Helitron	RC	32	tiny	164	medium	4422416	chromoarm	3039	no-CHH	RDR6-RdDM	.	.	.	.	.
Chr4	7556122	7556160	AT4TE32985	.	+	ATREP8	Helitron	RC	38	tiny	75	medium	4422448	chromoarm	3071	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	7556731	7557358	AT4TE32990	.	-	ATHILA4D_LTR	Gypsy	LTR	627	short	106	medium	4423057	chromoarm	3680	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	7557358	7559782	AT4TE32995	.	-	ATHILA4A	Gypsy	LTR	2424	medium	310	high	4423684	chromoarm	4307	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	7560578	7560900	AT4TE33000	.	+	ATLINE1_3A	L1	LINE	322	short	160	medium	4426904	chromoarm	7385	no-CHH	no-CHH	.	.	.	.	.
Chr4	7561246	7561309	AT4TE33005	.	+	ARNOLDY1	MuDR	DNA	63	tiny	237	high	4427572	chromoarm	6976	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7561309	7563713	AT4TE33010	.	-	ATDNA1T9A	MuDR	DNA	2404	medium	36	low	4427635	chromoarm	4572	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	7563882	7563297	-	transcript_id-"6bce726e-acd6-4a26-a994-7ad0564e5cc0|3"
Chr4	7563751	7564069	AT4TE33015	.	-	VANDAL4	MuDR	DNA	318	short	102	medium	4430077	chromoarm	4216	PolIV-and-RDR6-RdDM	PolIV-RdDM	ExpressedAndAnnotated	7563882	7563297	-	transcript_id-"6bce726e-acd6-4a26-a994-7ad0564e5cc0|3"
Chr4	7564070	7564124	AT4TE33020	.	+	ARNOLDY1	MuDR	DNA	55	tiny	237	high	4430395	chromoarm	4161	.	.	.	.	.	.	.
Chr4	7564124	7565284	AT4TE33025	.	+	HELITRONY3	Helitron	RC	1160	short	1399	high	4430450	chromoarm	3001	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	7565284	7567023	AT4TE33030	.	+	HELITRONY3	Helitron	RC	1739	short	1399	high	4431610	chromoarm	1262	no-CHH	no-CHH	.	.	.	.	.
Chr4	7567023	7567506	AT4TE33035	.	-	ATREP4	Helitron	RC	483	short	832	high	4433349	chromoarm	779	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	7567506	7567548	AT4TE33040	.	+	ATREP10A	Helitron	RC	42	tiny	279	high	4433832	chromoarm	737	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	7571551	7571823	AT4TE33060	.	-	ATHATN5	HAT	DNA	272	short	42	low	4437877	chromoarm	1457	no-CHH	no-CHH	.	.	.	.	.
Chr4	7571823	7573003	AT4TE33065	.	+	ATREP3	Helitron	RC	1180	short	1439	high	4438149	chromoarm	277	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7573003	7573054	AT4TE33070	.	-	ATREP10D	Helitron	RC	51	tiny	1295	high	4439329	chromoarm	226	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr4	7573054	7573170	AT4TE33075	.	-	ATREP15	Helitron	RC	116	short	1003	high	4439380	chromoarm	110	no-CHH	no-CHH	.	.	.	.	.
Chr4	7574863	7575001	AT4TE33080	.	-	TAG1	HAT	DNA	138	short	28	low	4441189	chromoarm	236	no-CHH	no-CHH	.	.	.	.	.
Chr4	7575001	7575563	AT4TE33085	.	-	TAG3N1	HAT	DNA	562	short	97	medium	4441327	chromoarm	374	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	7577826	7577965	AT4TE33095	.	-	ATHATN7	HAT	DNA	139	short	71	medium	4444152	chromoarm	654	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	7577971	7579387	AT4TE33100	.	+	ARNOLDY2	MuDR	DNA	1416	short	288	high	4444297	chromoarm	799	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7579387	7579555	AT4TE33105	.	-	ATHATN7	HAT	DNA	168	short	71	medium	4445713	chromoarm	2215	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	7579558	7579922	AT4TE33110	.	+	ATREP10D	Helitron	RC	364	short	1295	high	4445884	chromoarm	2386	no-CHH	no-CHH	.	.	.	.	.
Chr4	7579922	7580894	AT4TE33115	.	+	ATREP8	Helitron	RC	972	short	75	medium	4446248	chromoarm	2406	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7580912	7580961	AT4TE33120	.	-	TAG3N1	HAT	DNA	49	tiny	97	medium	4447238	chromoarm	2339	no-RdDM	no-CHH	.	.	.	.	.
Chr4	7580961	7581594	AT4TE33125	.	+	TAG3N1	HAT	DNA	633	short	97	medium	4447287	chromoarm	1706	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	7581598	7582831	AT4TE33130	.	-	ATREP5	Helitron	RC	1233	short	624	high	4447924	chromoarm	469	no-CHH	no-CHH	.	.	.	.	.
Chr4	7592889	7592958	AT4TE33180	.	-	ATREP15	Helitron	RC	69	tiny	1003	high	4459215	chromoarm	1815	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	7592958	7593995	AT4TE33185	.	+	ATREP11	Helitron	RC	1037	short	841	high	4459284	chromoarm	1048	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7593998	7594194	AT4TE33190	.	+	HELITRONY1E	Helitron	RC	196	short	447	high	4460324	chromoarm	849	no-CHH	no-CHH	.	.	.	.	.
Chr4	7594194	7594248	AT4TE33195	.	-	ATCOPIA34	Copia	LTR	54	tiny	16	low	4460520	chromoarm	795	no-CHH	no-CHH	.	.	.	.	.
Chr4	7594248	7596565	AT4TE33200	.	-	ATCOPIA34	Copia	LTR	2317	medium	16	low	4460574	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	7595131	7595242	AT4TE33205	.	-	ATCOPIA57	Copia	LTR	111	short	48	low	4461457	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	7609987	7610485	AT4TE33280	.	-	HELITRONY1A	Helitron	RC	498	short	271	high	4476313	chromoarm	331	no-CHH	no-CHH	.	.	.	.	.
Chr4	7610485	7610564	AT4TE33285	.	+	ATREP3	Helitron	RC	79	tiny	1439	high	4476811	chromoarm	829	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	7611781	7611854	AT4TE33290	.	-	RathE1_cons	.	RathE1_cons	73	tiny	213	high	4478107	chromoarm	1865	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	7612342	7613233	AT4TE33295	.	+	ATREP4	Helitron	RC	891	short	832	high	4478668	chromoarm	486	no-CHH	no-CHH	.	.	.	.	.
Chr4	7623367	7623466	AT4TE33340	.	+	ARNOLDY1	MuDR	DNA	99	tiny	237	high	4489693	chromoarm	316	no-CHH	no-CHH	.	.	.	.	.
Chr4	7623466	7623487	AT4TE33345	.	-	ATREP1	Helitron	RC	21	tiny	498	high	4489792	chromoarm	415	no-CHH	no-CHH	.	.	.	.	.
Chr4	7623487	7624382	AT4TE33350	.	+	ATREP15	Helitron	RC	895	short	1003	high	4489813	chromoarm	436	no-CHH	no-CHH	.	.	.	.	.
Chr4	7627024	7627493	AT4TE33360	.	+	BRODYAGA1A	MuDR	DNA	469	short	586	high	4493350	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	7628316	7630511	AT4TE33365	.	-	ATREP10D	Helitron	RC	2195	medium	1295	high	4494642	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	7630511	7630649	AT4TE33370	.	-	ATREP4	Helitron	RC	138	short	832	high	4496837	chromoarm	885	no-CHH	no-CHH	.	.	.	.	.
Chr4	7631349	7631405	AT4TE33375	.	-	ATREP7	Helitron	RC	56	tiny	164	medium	4497675	chromoarm	129	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	7632943	7633665	AT4TE33380	.	-	ATREP15	Helitron	RC	722	short	1003	high	4499269	chromoarm	73	no-CHH	no-CHH	.	.	.	.	.
Chr4	7633665	7633784	AT4TE33385	.	+	ATREP3	Helitron	RC	119	short	1439	high	4499991	chromoarm	795	no-CHH	no-CHH	.	.	.	.	.
Chr4	7635646	7635744	AT4TE33395	.	-	ATLINE1_3A	L1	LINE	98	tiny	160	medium	4501972	chromoarm	163	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	7640970	7641212	AT4TE33420	.	-	ATHATN8	HAT	DNA	242	short	15	low	4507296	chromoarm	294	no-CHH	no-CHH	.	.	.	.	.
Chr4	7644047	7644125	AT4TE33430	.	-	ATHAT7	HAT	DNA	78	tiny	20	low	4510373	chromoarm	1590	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	7644125	7645844	AT4TE33435	.	-	ATHAT3	HAT	DNA	1719	short	23	low	4510451	chromoarm	1544	no-CHH	no-CHH	ExpressedAndAnnotated	7646560	7642824	-	transcript_id-"e083c5dd-9c41-4dd9-be5a-7bf62492a578|5"
Chr4	7645846	7645880	AT4TE33440	.	-	ATHAT2	HAT	DNA	34	tiny	19	low	4512172	chromoarm	1508	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	7646580	7646737	AT4TE33445	.	-	ATHATN6	HAT	DNA	157	short	43	low	4512906	chromoarm	651	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	7652281	7652337	AT4TE33470	.	-	HELITRONY3	Helitron	RC	56	tiny	1399	high	4518607	chromoarm	44	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	7652337	7652385	AT4TE33475	.	-	BRODYAGA1	MuDR	DNA	48	tiny	251	high	4518663	chromoarm	100	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	7652385	7653562	AT4TE33480	.	+	ATREP2A	Helitron	RC	1177	short	116	medium	4518711	chromoarm	148	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7653562	7653652	AT4TE33485	.	+	HELITRONY1D	Helitron	RC	90	tiny	756	high	4519888	chromoarm	332	no-CHH	no-CHH	.	.	.	.	.
Chr4	7653653	7653685	AT4TE33490	.	+	ATREP2A	Helitron	RC	33	tiny	116	medium	4519978	chromoarm	299	.	.	.	.	.	.	.
Chr4	7665140	7666032	AT4TE33550	.	-	ATREP1	Helitron	RC	892	short	498	high	4531466	chromoarm	2138	no-CHH	no-CHH	.	.	.	.	.
Chr4	7666229	7667179	AT4TE33555	.	-	ATREP10D	Helitron	RC	950	short	1295	high	4532555	chromoarm	1112	no-CHH	no-CHH	.	.	.	.	.
Chr4	7667179	7667335	AT4TE33560	.	-	ATREP1	Helitron	RC	156	short	498	high	4533505	chromoarm	956	no-CHH	no-CHH	.	.	.	.	.
Chr4	7675484	7675622	AT4TE33600	.	-	RathE3_cons	.	RathE3_cons	138	short	104	medium	4541810	chromoarm	209	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	7682466	7683424	AT4TE33640	.	-	HELITRONY3	Helitron	RC	958	short	1399	high	4548792	chromoarm	52	no-CHH	no-CHH	.	.	.	.	.
Chr4	7683424	7683448	AT4TE33645	.	+	BRODYAGA2	MuDR	DNA	24	tiny	525	high	4549750	chromoarm	968	no-CHH	no-CHH	.	.	.	.	.
Chr4	7687713	7688589	AT4TE33660	.	+	ATHILA8A	Gypsy	LTR	876	short	97	medium	4554039	chromoarm	1022	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7688589	7689574	AT4TE33665	.	-	ATENSPM11	En-Spm	DNA	985	short	47	low	4554915	chromoarm	1898	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7690445	7690665	AT4TE33670	.	-	ATDNA2T9C	MuDR	DNA	220	short	242	high	4556771	chromoarm	3754	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	7690988	7691542	AT4TE33675	.	-	VANDAL3	MuDR	DNA	555	short	177	medium	4557313	chromoarm	4296	.	.	.	.	.	.	.
Chr4	7691841	7691865	AT4TE33680	.	-	ATENSPM3	En-Spm	DNA	24	tiny	98	medium	4558167	chromoarm	5150	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	7691865	7692845	AT4TE33685	.	-	ATENSPM11	En-Spm	DNA	980	short	47	low	4558191	chromoarm	5174	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	7693529	7693979	AT4TE33690	.	+	ATREP9	Helitron	RC	450	short	201	high	4559855	chromoarm	6838	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7694255	7694760	AT4TE33695	.	-	VANDAL3	MuDR	DNA	505	short	177	medium	4560581	chromoarm	7564	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7694761	7695117	AT4TE33700	.	-	ATENSPM3	En-Spm	DNA	357	short	98	medium	4561086	chromoarm	8069	.	.	.	.	.	.	.
Chr4	7695119	7696092	AT4TE33705	.	-	ATENSPM11	En-Spm	DNA	973	short	47	low	4561445	chromoarm	8428	RDR6-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	7696965	7697184	AT4TE33710	.	-	ATDNA2T9C	MuDR	DNA	220	short	242	high	4563290	chromoarm	8824	.	.	.	.	.	.	.
Chr4	7697507	7698011	AT4TE33715	.	-	VANDAL3	MuDR	DNA	505	short	177	medium	4563832	chromoarm	7997	.	.	.	.	.	.	.
Chr4	7698012	7698368	AT4TE33720	.	-	ATENSPM3	En-Spm	DNA	357	short	98	medium	4564337	chromoarm	7640	.	.	.	.	.	.	.
Chr4	7698370	7699343	AT4TE33725	.	-	ATENSPM11	En-Spm	DNA	973	short	47	low	4564696	chromoarm	6665	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	7700215	7700435	AT4TE33730	.	-	ATDNA2T9C	MuDR	DNA	220	short	242	high	4566541	chromoarm	5573	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	7700757	7701312	AT4TE33735	.	-	VANDAL3	MuDR	DNA	555	short	177	medium	4567083	chromoarm	4696	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	7701616	7702624	AT4TE33740	.	-	ATENSPM11	En-Spm	DNA	1008	short	47	low	4567942	chromoarm	3384	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7703481	7703700	AT4TE33745	.	-	ATDNA2T9C	MuDR	DNA	220	short	242	high	4569806	chromoarm	2308	.	.	.	.	.	.	.
Chr4	7704022	7704577	AT4TE33750	.	-	VANDAL3	MuDR	DNA	555	short	177	medium	4570348	chromoarm	1431	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7713572	7713655	AT4TE33800	.	-	ATHILA7	Gypsy	LTR	83	tiny	134	medium	4579898	chromoarm	2059	no-CHH	no-CHH	.	.	.	.	.
Chr4	7716308	7716398	AT4TE33810	.	+	HELITRONY3	Helitron	RC	90	tiny	1399	high	4582634	chromoarm	4795	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	7716398	7717510	AT4TE33815	.	+	HELITRONY3	Helitron	RC	1112	short	1399	high	4582724	chromoarm	4329	no-CHH	no-CHH	.	.	.	.	.
Chr4	7718352	7718596	AT4TE33820	.	+	RathE2_cons	.	RathE2_cons	244	short	74	medium	4584678	chromoarm	3243	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	7721074	7721176	AT4TE33830	.	-	ATHATN3	HAT	DNA	102	short	70	medium	4587400	chromoarm	663	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	7735351	7735958	AT4TE33910	.	+	TNAT2A	.	DNA	607	short	38	low	4601677	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	7735958	7736010	AT4TE33915	.	-	VANDALNX1	MuDR	DNA	52	tiny	14	low	4602284	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	7737786	7737933	AT4TE33920	.	-	RathE1_cons	.	RathE1_cons	147	short	213	high	4604112	chromoarm	1041	no-CHH	no-CHH	.	.	.	.	.
Chr4	7739178	7739457	AT4TE33925	.	-	ATLINE1A	L1	LINE	279	short	289	high	4605504	chromoarm	1223	no-CHH	no-CHH	.	.	.	.	.
Chr4	7743953	7744288	AT4TE33940	.	+	ATTIR16T3A	.	DNA	335	short	106	medium	4610279	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	7748842	7749679	AT4TE33960	.	-	HELITRONY2	Helitron	RC	837	short	198	medium	4615168	chromoarm	773	no-CHH	no-CHH	.	.	.	.	.
Chr4	7751806	7752727	AT4TE33970	.	-	HELITRONY3	Helitron	RC	921	short	1399	high	4618132	chromoarm	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	7752224	7752588	AT4TE33975	.	-	ATMUNX1	MuDR	DNA	364	short	155	medium	4618550	chromoarm	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	7759917	7760578	AT4TE34010	.	+	ATHILA6A	Gypsy	LTR	661	short	247	high	4626243	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	7760656	7760845	AT4TE34015	.	+	VANDAL1	MuDR	DNA	189	short	80	medium	4626982	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	7762679	7762866	AT4TE34020	.	+	ATDNA12T3_2	.	DNA	187	short	660	high	4629005	chromoarm	1787	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7764114	7764211	AT4TE34025	.	-	ATSINE2A	.	SINE	97	tiny	33	low	4630440	chromoarm	3080	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	7773814	7774468	AT4TE34070	.	+	ATREP10A	Helitron	RC	654	short	279	high	4640140	chromoarm	493	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	7774468	7774504	AT4TE34075	.	+	HELITRONY2	Helitron	RC	36	tiny	198	medium	4640794	chromoarm	628	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr4	7780348	7780425	AT4TE34100	.	-	ATREP15	Helitron	RC	77	tiny	1003	high	4646674	chromoarm	14	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	7780425	7781637	AT4TE34105	.	+	ATREP10D	Helitron	RC	1212	short	1295	high	4646751	chromoarm	91	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	7781637	7781828	AT4TE34110	.	-	ATREP15	Helitron	RC	191	short	1003	high	4647963	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	7786286	7786468	AT4TE34130	.	-	HELITRONY1D	Helitron	RC	182	short	756	high	4652612	chromoarm	236	no-CHH	no-CHH	.	.	.	.	.
Chr4	7786468	7786517	AT4TE34135	.	+	BRODYAGA1A	MuDR	DNA	49	tiny	586	high	4652794	chromoarm	418	no-CHH	no-CHH	.	.	.	.	.
Chr4	7786517	7787024	AT4TE34140	.	-	ATREP1	Helitron	RC	507	short	498	high	4652843	chromoarm	467	no-CHH	no-CHH	.	.	.	.	.
Chr4	7791965	7792039	AT4TE34170	.	-	ATHAT2	HAT	DNA	74	tiny	19	low	4658291	chromoarm	179	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	7799735	7799858	AT4TE34210	.	+	HELITRON4	Helitron	RC	123	short	199	medium	4666061	chromoarm	0	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	7799858	7800628	AT4TE34215	.	-	BRODYAGA2	MuDR	DNA	770	short	525	high	4666184	chromoarm	0	PolIV-and-RDR6-RdDM	RDR6-RdDM	.	.	.	.	.
Chr4	7800628	7800666	AT4TE34220	.	+	HELITRONY3	Helitron	RC	38	tiny	1399	high	4666954	chromoarm	0	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7801906	7801980	AT4TE34225	.	+	ATLINE1A	L1	LINE	74	tiny	289	high	4668232	chromoarm	0	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	7808099	7808295	AT4TE34250	.	+	ATHPOGON3	Pogo	DNA	196	short	118	medium	4674425	chromoarm	310	no-CHH	no-CHH	.	.	.	.	.
Chr4	7810693	7810943	AT4TE34260	.	+	ATREP9	Helitron	RC	250	short	201	high	4677019	chromoarm	14	no-CHH	no-CHH	.	.	.	.	.
Chr4	7810943	7811478	AT4TE34265	.	+	ATHPOGON1	Pogo	DNA	535	short	174	medium	4677269	chromoarm	264	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7811478	7811912	AT4TE34270	.	-	ATREP11	Helitron	RC	434	short	841	high	4677804	chromoarm	799	no-CHH	no-CHH	.	.	.	.	.
Chr4	7816801	7816825	AT4TE34300	.	+	META1	Copia	LTR	24	tiny	138	medium	4683127	chromoarm	897	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7816825	7821792	AT4TE34305	.	+	META1	Copia	LTR	4967	medium	138	medium	4683151	chromoarm	921	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	7823773	7824056	AT4TE34315	.	+	TNAT1A	.	DNA	283	short	162	medium	4690099	chromoarm	596	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	7827026	7827674	AT4TE34325	.	-	ATHPOGON3	Pogo	DNA	648	short	118	medium	4693352	chromoarm	421	no-CHH	no-CHH	.	.	.	.	.
Chr4	7827674	7827757	AT4TE34330	.	+	BRODYAGA2	MuDR	DNA	83	tiny	525	high	4694000	chromoarm	1069	no-CHH	no-CHH	.	.	.	.	.
Chr4	7827757	7827853	AT4TE34335	.	+	ATREP5	Helitron	RC	96	tiny	624	high	4694083	chromoarm	1152	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	7827853	7828980	AT4TE34340	.	-	ATLINE2	L1	LINE	1127	short	138	medium	4694179	chromoarm	1248	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	7829230	7829418	AT4TE34345	.	+	VANDAL1	MuDR	DNA	188	short	80	medium	4695556	chromoarm	2625	no-CHH	no-CHH	.	.	.	.	.
Chr4	7829972	7830065	AT4TE34350	.	+	ATREP10D	Helitron	RC	93	tiny	1295	high	4696298	chromoarm	3367	no-CHH	no-CHH	.	.	.	.	.
Chr4	7830065	7831073	AT4TE34355	.	+	ATREP14	Helitron	RC	1008	short	47	low	4696391	chromoarm	3460	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7831073	7831530	AT4TE34360	.	-	ATREP19	.	DNA	457	short	189	medium	4697399	chromoarm	4468	no-CHH	no-CHH	.	.	.	.	.
Chr4	7837998	7838332	AT4TE34390	.	-	ATREP11	Helitron	RC	335	short	841	high	4704323	chromoarm	344	.	.	.	.	.	.	.
Chr4	7838332	7838948	AT4TE34395	.	+	ATREP13	Helitron	RC	616	short	106	medium	4704658	chromoarm	188	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7838948	7838980	AT4TE34400	.	+	ATREP13	Helitron	RC	32	tiny	106	medium	4705274	chromoarm	156	no-CHH	no-CHH	.	.	.	.	.
Chr4	7843867	7844589	AT4TE34430	.	-	ATREP10D	Helitron	RC	722	short	1295	high	4710193	chromoarm	3583	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	7844589	7844702	AT4TE34435	.	+	ATREP10A	Helitron	RC	113	short	279	high	4710915	chromoarm	4305	PolIV-and-RDR6-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	7844728	7844783	AT4TE34440	.	-	ATREP10C	Helitron	RC	55	tiny	123	medium	4711054	chromoarm	4444	PolIV-and-RDR6-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	7851922	7852593	AT4TE34480	.	+	ATREP10D	Helitron	RC	671	short	1295	high	4718248	chromoarm	4393	no-CHH	no-CHH	.	.	.	.	.
Chr4	7852593	7852685	AT4TE34485	.	-	ATREP3	Helitron	RC	92	tiny	1439	high	4718919	chromoarm	4301	no-CHH	no-CHH	.	.	.	.	.
Chr4	7852685	7853798	AT4TE34490	.	-	ATREP11	Helitron	RC	1113	short	841	high	4719011	chromoarm	3188	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	7853798	7853845	AT4TE34495	.	+	ATREP10B	Helitron	RC	47	tiny	491	high	4720124	chromoarm	3141	no-CHH	no-CHH	.	.	.	.	.
Chr4	7861572	7861746	AT4TE34530	.	-	DT1	Mariner	DNA	174	short	123	medium	4727898	chromoarm	1847	no-CHH	no-CHH	.	.	.	.	.
Chr4	7863775	7864194	AT4TE34540	.	+	ATREP5	Helitron	RC	419	short	624	high	4730101	chromoarm	267	no-RdDM	no-CHH	.	.	.	.	.
Chr4	7864194	7864308	AT4TE34545	.	+	ATREP3	Helitron	RC	114	short	1439	high	4730520	chromoarm	153	no-CHH	no-CHH	.	.	.	.	.
Chr4	7865957	7866029	AT4TE34550	.	+	ATREP2	Helitron	RC	72	tiny	164	medium	4732283	chromoarm	778	no-CHH	no-CHH	.	.	.	.	.
Chr4	7866029	7866312	AT4TE34555	.	-	DT1	Mariner	DNA	283	short	123	medium	4732355	chromoarm	495	no-CHH	no-CHH	.	.	.	.	.
Chr4	7869862	7870192	AT4TE34565	.	-	VANDAL17	MuDR	DNA	330	short	178	medium	4736188	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	7886036	7886095	AT4TE34650	.	+	ATREP10C	Helitron	RC	59	tiny	123	medium	4752362	chromoarm	372	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	7886095	7887103	AT4TE34655	.	+	ATREP10A	Helitron	RC	1008	short	279	high	4752421	chromoarm	336	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	7892659	7892720	AT4TE34680	.	+	ATHILA7	Gypsy	LTR	61	tiny	134	medium	4758985	chromoarm	370	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr4	7893890	7894353	AT4TE34685	.	-	HELITRONY3	Helitron	RC	463	short	1399	high	4760216	chromoarm	283	no-CHH	no-CHH	.	.	.	.	.
Chr4	7896205	7896263	AT4TE34690	.	+	ATREP8	Helitron	RC	59	tiny	75	medium	4762530	chromoarm	2597	.	.	.	.	.	.	.
Chr4	7896263	7897400	AT4TE34695	.	+	ATREP8	Helitron	RC	1137	short	75	medium	4762589	chromoarm	2656	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7897400	7897672	AT4TE34700	.	+	ATREP10D	Helitron	RC	272	short	1295	high	4763726	chromoarm	2754	no-CHH	no-CHH	.	.	.	.	.
Chr4	7899395	7899852	AT4TE34705	.	+	TNAT1A	.	DNA	457	short	162	medium	4765721	chromoarm	574	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7905131	7905241	AT4TE34730	.	-	ATREP9	Helitron	RC	110	short	201	high	4771457	chromoarm	1339	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7905246	7906951	AT4TE34735	.	+	ATREP8	Helitron	RC	1705	short	75	medium	4771572	chromoarm	1454	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7905771	7906367	AT4TE34740	.	+	ATREP2A	Helitron	RC	596	short	116	medium	4772097	chromoarm	1979	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7906967	7907014	AT4TE34745	.	+	ATREP11	Helitron	RC	47	tiny	841	high	4773293	chromoarm	3175	no-CHH	no-CHH	.	.	.	.	.
Chr4	7907691	7908251	AT4TE34750	.	-	ATREP5	Helitron	RC	560	short	624	high	4774017	chromoarm	2927	no-CHH	no-CHH	.	.	.	.	.
Chr4	7908578	7908700	AT4TE34755	.	-	ATMUNX1	MuDR	DNA	122	short	155	medium	4774904	chromoarm	2478	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7909426	7909631	AT4TE34760	.	-	HELITRONY1B	Helitron	RC	205	short	414	high	4775752	chromoarm	1547	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	7909631	7909652	AT4TE34765	.	-	HELITRONY1A	Helitron	RC	21	tiny	271	high	4775957	chromoarm	1526	no-CHH	no-CHH	.	.	.	.	.
Chr4	7909652	7910831	AT4TE34770	.	-	HELITRONY1B	Helitron	RC	1179	short	414	high	4775978	chromoarm	347	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7910831	7911059	AT4TE34775	.	-	HELITRONY3A	Helitron	RC	228	short	49	low	4777157	chromoarm	119	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	7911059	7911138	AT4TE34780	.	-	HELITRONY1E	Helitron	RC	79	tiny	447	high	4777385	chromoarm	40	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	7916721	7917102	AT4TE34810	.	-	ATREP7	Helitron	RC	381	short	164	medium	4783047	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	7923175	7923239	AT4TE34840	.	-	VANDAL1	MuDR	DNA	64	tiny	80	medium	4789501	chromoarm	1113	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	7923309	7923670	AT4TE34845	.	-	TSCL	.	LINE?	361	short	81	medium	4789635	chromoarm	682	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7925975	7926003	AT4TE34855	.	-	ATHPOGO	Pogo	DNA	28	tiny	25	low	4792301	chromoarm	958	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7926003	7926300	AT4TE34860	.	-	ATREP19	.	DNA	297	short	189	medium	4792329	chromoarm	986	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7929487	7930596	AT4TE34870	.	-	ATREP4	Helitron	RC	1109	short	832	high	4795813	chromoarm	1541	no-CHH	no-CHH	.	.	.	.	.
Chr4	7944931	7945148	AT4TE34950	.	+	ATDNAI27T9C	MuDR	DNA	217	short	108	medium	4811257	chromoarm	1134	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	7950764	7951379	AT4TE34980	.	-	HELITRONY3	Helitron	RC	615	short	1399	high	4817090	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	7951379	7951468	AT4TE34985	.	-	HELITRON4	Helitron	RC	89	tiny	199	medium	4817705	chromoarm	247	no-CHH	no-CHH	.	.	.	.	.
Chr4	7955867	7956745	AT4TE35000	.	+	HELITRONY1D	Helitron	RC	878	short	756	high	4822193	chromoarm	326	no-CHH	no-CHH	.	.	.	.	.
Chr4	7956745	7956775	AT4TE35005	.	+	ATREP5	Helitron	RC	30	tiny	624	high	4823071	chromoarm	296	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	7969145	7969438	AT4TE35070	.	-	HELITRONY1B	Helitron	RC	293	short	414	high	4835471	chromoarm	251	no-CHH	no-CHH	.	.	.	.	.
Chr4	7969438	7969577	AT4TE35075	.	+	ATREP15	Helitron	RC	139	short	1003	high	4835764	chromoarm	544	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	7969876	7970060	AT4TE35080	.	-	BRODYAGA1	MuDR	DNA	184	short	251	high	4836202	chromoarm	238	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	7989638	7989667	AT4TE35190	.	-	ATREP5	Helitron	RC	29	tiny	624	high	4855964	chromoarm	0	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr4	7989667	7989725	AT4TE35195	.	-	BRODYAGA2	MuDR	DNA	58	tiny	525	high	4855993	chromoarm	19	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	7989725	7990413	AT4TE35200	.	+	ATREP3	Helitron	RC	688	short	1439	high	4856051	chromoarm	77	no-CHH	no-CHH	.	.	.	.	.
Chr4	7990413	7990601	AT4TE35205	.	+	ATREP4	Helitron	RC	188	short	832	high	4856739	chromoarm	80	no-CHH	no-CHH	.	.	.	.	.
Chr4	7992867	7992995	AT4TE35215	.	-	ATTIRX1A	.	DNA	128	short	63	medium	4859193	chromoarm	370	no-CHH	no-CHH	.	.	.	.	.
Chr4	8021946	8022106	AT4TE35370	.	-	VANDAL1	MuDR	DNA	160	short	80	medium	4888272	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	8028437	8028536	AT4TE35400	.	-	ARNOLD2	MuDR	DNA	99	tiny	68	medium	4894763	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	8039897	8040359	AT4TE35460	.	+	TAT1_ATH	Gypsy	LTR	462	short	87	medium	4906223	chromoarm	3501	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	8059694	8060188	AT4TE35560	.	-	ATREP19	.	DNA	494	short	189	medium	4926020	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	8060189	8060216	AT4TE35565	.	+	ATREP11	Helitron	RC	27	tiny	841	high	4926515	chromoarm	447	no-CHH	no-CHH	.	.	.	.	.
Chr4	8063240	8063573	AT4TE35575	.	+	HELITRONY3	Helitron	RC	333	short	1399	high	4929566	chromoarm	1009	no-CHH	no-CHH	.	.	.	.	.
Chr4	8063573	8066146	AT4TE35580	.	+	ATREP3	Helitron	RC	2573	medium	1439	high	4929899	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	8066151	8066261	AT4TE35585	.	+	ATREP10B	Helitron	RC	110	short	491	high	4932477	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	8067746	8069420	AT4TE35590	.	+	ATREP10D	Helitron	RC	1674	short	1295	high	4934072	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	8069420	8069689	AT4TE35595	.	-	ATREP1	Helitron	RC	269	short	498	high	4935746	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	8075688	8076068	AT4TE35620	.	-	ATHATN5	HAT	DNA	380	short	42	low	4942014	chromoarm	1450	no-CHH	no-CHH	.	.	.	.	.
Chr4	8083553	8084139	AT4TE35660	.	+	BRODYAGA2	MuDR	DNA	586	short	525	high	4949879	chromoarm	255	no-CHH	no-CHH	.	.	.	.	.
Chr4	8096295	8096766	AT4TE35730	.	+	ATREP9	Helitron	RC	471	short	201	high	4962621	chromoarm	590	no-CHH	no-CHH	.	.	.	.	.
Chr4	8105533	8106081	AT4TE35780	.	+	ATREP9	Helitron	RC	548	short	201	high	4971859	chromoarm	50	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	8109153	8109192	AT4TE35790	.	-	ATGP5	Gypsy	LTR	39	tiny	86	medium	4975479	chromoarm	995	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	8109192	8109907	AT4TE35795	.	-	ATGP6	Gypsy	LTR	715	short	25	low	4975518	chromoarm	1034	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	8129708	8129975	AT4TE35900	.	+	HELITRONY1B	Helitron	RC	267	short	414	high	4996034	chromoarm	32	no-CHH	no-CHH	.	.	.	.	.
Chr4	8129975	8130279	AT4TE35905	.	+	ARNOLDY1	MuDR	DNA	304	short	237	high	4996301	chromoarm	299	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	8130279	8131168	AT4TE35910	.	+	ATN9_1	MuDR	DNA	889	short	65	medium	4996605	chromoarm	603	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	8131169	8131273	AT4TE35915	.	+	ATN9_1	MuDR	DNA	105	short	65	medium	4997494	chromoarm	1492	.	.	.	.	.	.	.
Chr4	8131273	8131338	AT4TE35920	.	+	ATN9_1	MuDR	DNA	65	tiny	65	medium	4997599	chromoarm	1597	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	8131338	8131391	AT4TE35925	.	+	ARNOLDY1	MuDR	DNA	53	tiny	237	high	4997664	chromoarm	1657	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	8132199	8132596	AT4TE35930	.	-	ATHPOGON1	Pogo	DNA	397	short	174	medium	4998525	chromoarm	452	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	8141780	8142803	AT4TE35980	.	-	SIMPLEHAT1	HAT	DNA	1023	short	56	medium	5008106	chromoarm	3541	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	8144289	8144493	AT4TE35985	.	+	ATREP4	Helitron	RC	204	short	832	high	5010615	chromoarm	1851	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	8144493	8145910	AT4TE35990	.	-	ATREP10D	Helitron	RC	1417	short	1295	high	5010819	chromoarm	434	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	8166565	8167325	AT4TE36100	.	-	ARNOLDY2	MuDR	DNA	760	short	288	high	5032891	chromoarm	248	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	8173350	8173640	AT4TE36130	.	-	ATMUNX1	MuDR	DNA	290	short	155	medium	5039676	chromoarm	324	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	8188952	8189931	AT4TE36210	.	+	ATREP11	Helitron	RC	979	short	841	high	5055278	chromoarm	285	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	8189931	8189958	AT4TE36215	.	-	ATREP4	Helitron	RC	27	tiny	832	high	5056257	chromoarm	467	no-CHH	no-CHH	.	.	.	.	.
Chr4	8195394	8195616	AT4TE36240	.	-	ATCOPIA14	Copia	LTR	222	short	7	low	5061720	chromoarm	395	no-CHH	no-CHH	.	.	.	.	.
Chr4	8195783	8196086	AT4TE36245	.	+	ATENSPM5	En-Spm	DNA	303	short	111	medium	5062109	chromoarm	0	no-CHH	no-CHH	ExpressedAndAnnotated	8195862	8198489	+	transcript_id-"ccdf9ab6-326f-46ae-a2d9-ab5cff8dfe14|3"
Chr4	8210390	8211157	AT4TE36320	.	-	ATREP15	Helitron	RC	767	short	1003	high	5076716	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	8214538	8215395	AT4TE36330	.	-	ATREP15	Helitron	RC	857	short	1003	high	5080864	chromoarm	655	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	8252352	8252521	AT4TE36530	.	+	ATCOPIA12	Copia	LTR	170	short	15	low	5118677	chromoarm	683	.	.	.	.	.	.	.
Chr4	8263794	8264885	AT4TE36590	.	+	ATREP10D	Helitron	RC	1091	short	1295	high	5130120	chromoarm	2610	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	8292222	8292667	AT4TE36740	.	-	VANDAL3	MuDR	DNA	445	short	177	medium	5158548	chromoarm	139	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	8294776	8294919	AT4TE36750	.	+	HELITRONY1D	Helitron	RC	143	short	756	high	5161102	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	8294919	8294943	AT4TE36755	.	-	HELITRONY1D	Helitron	RC	24	tiny	756	high	5161245	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	8294943	8296098	AT4TE36760	.	+	ATREP15	Helitron	RC	1155	short	1003	high	5161269	chromoarm	0	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	8296098	8296188	AT4TE36765	.	+	ATREP10D	Helitron	RC	90	tiny	1295	high	5162424	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	8304038	8304525	AT4TE36800	.	+	BRODYAGA1	MuDR	DNA	487	short	251	high	5170364	chromoarm	300	no-CHH	no-CHH	.	.	.	.	.
Chr4	8306185	8306299	AT4TE36805	.	-	RathE2_cons	.	RathE2_cons	114	short	74	medium	5172511	chromoarm	553	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	8313600	8313633	AT4TE36840	.	+	ATCOPIA17	Copia	LTR	33	tiny	16	low	5179926	chromoarm	1662	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	8313635	8319046	AT4TE36845	.	+	ATCOPIA17	Copia	LTR	5411	long	16	low	5179961	chromoarm	1697	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	8319046	8319066	AT4TE36850	.	+	ATCOPIA17	Copia	LTR	20	tiny	16	low	5185372	chromoarm	1905	no-RdDM	no-CHH	.	.	.	.	.
Chr4	8324919	8324970	AT4TE36880	.	-	ATREP11	Helitron	RC	51	tiny	841	high	5191245	chromoarm	3102	no-CHH	no-CHH	.	.	.	.	.
Chr4	8324970	8325790	AT4TE36885	.	-	HELITRONY1E	Helitron	RC	820	short	447	high	5191296	chromoarm	3153	no-CHH	no-CHH	.	.	.	.	.
Chr4	8325790	8326382	AT4TE36890	.	+	ATREP3	Helitron	RC	592	short	1439	high	5192116	chromoarm	3698	no-CHH	no-CHH	.	.	.	.	.
Chr4	8326717	8326980	AT4TE36895	.	-	RP1_AT	.	DNA	263	short	87	medium	5193043	chromoarm	3100	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	8327588	8327632	AT4TE36900	.	+	ATLINEIII	L1	LINE	44	tiny	196	medium	5193914	chromoarm	2448	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	8327632	8329716	AT4TE36905	.	+	ATLINEIII	L1	LINE	2084	medium	196	medium	5193958	chromoarm	364	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	8345613	8345718	AT4TE36990	.	-	RathE1_cons	.	RathE1_cons	105	short	213	high	5211939	chromoarm	465	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	8351048	8351708	AT4TE37020	.	+	ATREP3	Helitron	RC	660	short	1439	high	5217374	chromoarm	1125	no-CHH	no-CHH	.	.	.	.	.
Chr4	8355249	8355632	AT4TE37030	.	+	ATREP1	Helitron	RC	383	short	498	high	5221575	chromoarm	5326	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	8356369	8356817	AT4TE37035	.	-	BRODYAGA1A	MuDR	DNA	448	short	586	high	5222695	chromoarm	4364	no-CHH	no-CHH	.	.	.	.	.
Chr4	8367948	8368189	AT4TE37090	.	+	VANDAL17	MuDR	DNA	241	short	178	medium	5234274	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	8388251	8388712	AT4TE37200	.	+	BRODYAGA1A	MuDR	DNA	461	short	586	high	5254577	chromoarm	533	no-CHH	no-CHH	.	.	.	.	.
Chr4	8393674	8394263	AT4TE37230	.	+	ATREP11	Helitron	RC	589	short	841	high	5260000	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	8395130	8395521	AT4TE37235	.	-	ATCOPIA8B	Copia	LTR	391	short	8	low	5261456	chromoarm	1450	no-CHH	no-CHH	.	.	.	.	.
Chr4	8407890	8408254	AT4TE37300	.	+	HELITRONY3	Helitron	RC	364	short	1399	high	5274216	chromoarm	854	no-CHH	no-CHH	.	.	.	.	.
Chr4	8417119	8417325	AT4TE37350	.	-	ATCOPIA37	Copia	LTR	206	short	32	low	5283445	chromoarm	1047	no-CHH	no-CHH	.	.	.	.	.
Chr4	8421126	8422149	AT4TE37370	.	+	ATREP10D	Helitron	RC	1023	short	1295	high	5287452	chromoarm	86	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	8435000	8435079	AT4TE37440	.	-	ATDNAI27T9A	MuDR	DNA	79	tiny	116	medium	5301326	chromoarm	66	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr4	8440769	8441612	AT4TE37470	.	-	ATREP9	Helitron	RC	843	short	201	high	5307095	chromoarm	76	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	8442800	8443539	AT4TE37475	.	+	ATN9_1	MuDR	DNA	740	short	65	medium	5309125	chromoarm	2106	.	.	.	.	.	.	.
Chr4	8447554	8447766	AT4TE37490	.	-	ATCOPIA56	Copia	LTR	212	short	16	low	5313880	chromoarm	840	no-CHH	no-CHH	.	.	.	.	.
Chr4	8457615	8457688	AT4TE37540	.	+	ATHILA7	Gypsy	LTR	73	tiny	134	medium	5323941	chromoarm	3669	no-CHH	no-RdDM	.	.	.	.	.
Chr4	8461783	8462456	AT4TE37560	.	-	ATHPOGON1	Pogo	DNA	673	short	174	medium	5328109	chromoarm	263	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	8462456	8462882	AT4TE37565	.	+	AT9TSD1	MuDR	DNA	426	short	55	medium	5328782	chromoarm	0	no-CHH	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	8464540	8465257	AT4TE37570	.	-	ATREP11	Helitron	RC	717	short	841	high	5330866	chromoarm	214	no-CHH	no-CHH	.	.	.	.	.
Chr4	8465852	8466013	AT4TE37575	.	+	RathE1_cons	.	RathE1_cons	161	short	213	high	5332178	chromoarm	1526	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	8466373	8466521	AT4TE37580	.	-	ATCOPIA75	Copia	LTR	148	short	20	low	5332699	chromoarm	2047	no-CHH	no-CHH	.	.	.	.	.
Chr4	8486685	8486714	AT4TE37690	.	+	ATREP15	Helitron	RC	29	tiny	1003	high	5353011	chromoarm	1860	no-CHH	no-CHH	.	.	.	.	.
Chr4	8486714	8487954	AT4TE37695	.	+	ATREP10D	Helitron	RC	1240	short	1295	high	5353040	chromoarm	1889	no-CHH	no-CHH	.	.	.	.	.
Chr4	8491615	8492259	AT4TE37705	.	+	ATREP11	Helitron	RC	644	short	841	high	5357941	chromoarm	729	no-CHH	no-CHH	.	.	.	.	.
Chr4	8510049	8510646	AT4TE37800	.	+	ATREP4	Helitron	RC	597	short	832	high	5376375	chromoarm	11	no-CHH	no-CHH	.	.	.	.	.
Chr4	8550755	8551221	AT4TE38020	.	+	ATHPOGON1	Pogo	DNA	466	short	174	medium	5417081	chromoarm	134	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	8551221	8551325	AT4TE38025	.	+	ATREP10A	Helitron	RC	104	short	279	high	5417547	chromoarm	30	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	8563706	8564032	AT4TE38090	.	-	ATREP4	Helitron	RC	326	short	832	high	5430032	chromoarm	99	no-CHH	no-CHH	.	.	.	.	.
Chr4	8564032	8564947	AT4TE38095	.	-	ATREP11	Helitron	RC	915	short	841	high	5430358	chromoarm	425	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	8564947	8565038	AT4TE38100	.	-	ATREP11	Helitron	RC	91	tiny	841	high	5431273	chromoarm	1220	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	8565038	8565076	AT4TE38105	.	-	ATREP11	Helitron	RC	38	tiny	841	high	5431364	chromoarm	1182	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	8565076	8565115	AT4TE38110	.	-	HELITRONY1C	Helitron	RC	39	tiny	120	medium	5431402	chromoarm	1143	no-CHH	no-CHH	.	.	.	.	.
Chr4	8577766	8577909	AT4TE38180	.	+	TAG1	HAT	DNA	143	short	28	low	5444092	chromoarm	1079	no-CHH	no-CHH	ExpressedAndAnnotated	8575649	8578647	+	transcript_id-"605d4c38-5b65-4132-a392-4b9dd93c9e4a|5"
Chr4	8584430	8584642	AT4TE38220	.	-	ARNOLDY2	MuDR	DNA	212	short	288	high	5450756	chromoarm	308	no-CHH	no-CHH	.	.	.	.	.
Chr4	8584642	8585317	AT4TE38225	.	-	TNAT1A	.	DNA	675	short	162	medium	5450968	chromoarm	520	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	8585317	8585359	AT4TE38230	.	+	ATREP4	Helitron	RC	42	tiny	832	high	5451643	chromoarm	1195	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	8585364	8585679	AT4TE38235	.	-	ATDNA12T3_2	.	DNA	315	short	660	high	5451690	chromoarm	1242	no-CHH	no-CHH	.	.	.	.	.
Chr4	8585744	8585876	AT4TE38240	.	+	ATCOPIA28	Copia	LTR	132	short	81	medium	5452070	chromoarm	1622	no-CHH	no-CHH	.	.	.	.	.
Chr4	8586785	8586805	AT4TE38245	.	+	ATREP15	Helitron	RC	20	tiny	1003	high	5453111	chromoarm	1742	no-CHH	no-CHH	.	.	.	.	.
Chr4	8586805	8587045	AT4TE38250	.	-	ATREP15	Helitron	RC	240	short	1003	high	5453131	chromoarm	1502	no-CHH	no-CHH	.	.	.	.	.
Chr4	8587045	8587411	AT4TE38255	.	-	ATTIRX1D	.	DNA	366	short	28	low	5453371	chromoarm	1136	no-CHH	no-CHH	.	.	.	.	.
Chr4	8587411	8588224	AT4TE38260	.	+	HELITRONY1E	Helitron	RC	813	short	447	high	5453737	chromoarm	323	no-CHH	no-CHH	.	.	.	.	.
Chr4	8591177	8591242	AT4TE38270	.	+	ATCOPIA65A	Copia	LTR	65	tiny	9	low	5457503	chromoarm	687	no-CHH	DCL3-RdDM	.	.	.	.	.
Chr4	8591242	8591624	AT4TE38275	.	+	ATCOPIA65A	Copia	LTR	382	short	9	low	5457568	chromoarm	305	no-CHH	no-RdDM	.	.	.	.	.
Chr4	8595550	8595982	AT4TE38290	.	+	BRODYAGA1	MuDR	DNA	432	short	251	high	5461876	chromoarm	2	no-CHH	no-CHH	.	.	.	.	.
Chr4	8595982	8596012	AT4TE38295	.	-	ATREP15	Helitron	RC	30	tiny	1003	high	5462308	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	8597454	8597543	AT4TE38300	.	-	ATREP4	Helitron	RC	89	tiny	832	high	5463780	chromoarm	24	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	8597543	8597751	AT4TE38305	.	+	ATREP10C	Helitron	RC	208	short	123	medium	5463869	chromoarm	113	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	8597751	8598870	AT4TE38310	.	+	ATREP10C	Helitron	RC	1119	short	123	medium	5464077	chromoarm	164	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	8602368	8602807	AT4TE38320	.	+	HELITRONY1C	Helitron	RC	439	short	120	medium	5468694	chromoarm	186	no-CHH	no-CHH	.	.	.	.	.
Chr4	8602807	8603248	AT4TE38325	.	+	ATREP5	Helitron	RC	441	short	624	high	5469133	chromoarm	175	no-CHH	no-CHH	.	.	.	.	.
Chr4	8607199	8607750	AT4TE38340	.	-	ATHILA4D_LTR	Gypsy	LTR	551	short	106	medium	5473525	chromoarm	62	no-CHH	no-CHH	.	.	.	.	.
Chr4	8612738	8613948	AT4TE38370	.	+	HELITRONY1E	Helitron	RC	1210	short	447	high	5479064	chromoarm	509	no-CHH	no-CHH	.	.	.	.	.
Chr4	8613948	8613971	AT4TE38375	.	+	HELITRONY1E	Helitron	RC	23	tiny	447	high	5480274	chromoarm	834	no-CHH	no-CHH	.	.	.	.	.
Chr4	8620372	8620572	AT4TE38400	.	+	ATGP9B	Gypsy	LTR	201	short	27	low	5486697	chromoarm	23	.	.	.	.	.	.	.
Chr4	8622632	8623014	AT4TE38410	.	+	ATGP9B	Gypsy	LTR	382	short	27	low	5488958	chromoarm	0	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	8625150	8625448	AT4TE38420	.	-	TSCL	.	LINE?	298	short	81	medium	5491476	chromoarm	406	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	8633208	8634456	AT4TE38460	.	+	BRODYAGA1	MuDR	DNA	1248	short	251	high	5499534	chromoarm	215	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	8634456	8634480	AT4TE38465	.	-	BRODYAGA1A	MuDR	DNA	24	tiny	586	high	5500782	chromoarm	298	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	8634480	8634521	AT4TE38470	.	-	BRODYAGA1	MuDR	DNA	41	tiny	251	high	5500806	chromoarm	257	no-CHH	no-CHH	.	.	.	.	.
Chr4	8640657	8640718	AT4TE38500	.	+	ATENSPM10	En-Spm	DNA	61	tiny	81	medium	5506983	chromoarm	396	no-CHH	no-CHH	.	.	.	.	.
Chr4	8647587	8648126	AT4TE38540	.	+	BRODYAGA2	MuDR	DNA	539	short	525	high	5513913	chromoarm	568	no-CHH	no-CHH	.	.	.	.	.
Chr4	8670196	8670347	AT4TE38660	.	-	ATLINE1A	L1	LINE	151	short	289	high	5536522	chromoarm	839	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	8718831	8718984	AT4TE38920	.	+	HELITRONY3	Helitron	RC	153	short	1399	high	5585157	chromoarm	197	no-CHH	no-CHH	.	.	.	.	.
Chr4	8725001	8725064	AT4TE38950	.	+	ATREP3	Helitron	RC	63	tiny	1439	high	5591327	chromoarm	0	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr4	8725080	8725654	AT4TE38955	.	-	ATREP2A	Helitron	RC	575	short	116	medium	5591405	chromoarm	0	.	.	.	.	.	.	.
Chr4	8725654	8726328	AT4TE38960	.	+	HELITRONY3	Helitron	RC	674	short	1399	high	5591980	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	8726328	8726370	AT4TE38965	.	+	HELITRONY3	Helitron	RC	42	tiny	1399	high	5592654	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	8728059	8728247	AT4TE38970	.	+	ATCOPIA42	Copia	LTR	188	short	35	low	5594385	chromoarm	1460	no-CHH	no-CHH	.	.	.	.	.
Chr4	8728291	8728399	AT4TE38975	.	-	HELITRONY3	Helitron	RC	109	short	1399	high	5594616	chromoarm	1691	.	.	.	.	.	.	.
Chr4	8728399	8730519	AT4TE38980	.	-	ATREP3	Helitron	RC	2120	medium	1439	high	5594725	chromoarm	203	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	8730519	8730549	AT4TE38985	.	+	ATREP3	Helitron	RC	30	tiny	1439	high	5596845	chromoarm	173	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	8730564	8730689	AT4TE38990	.	+	ATREP4	Helitron	RC	125	short	832	high	5596890	chromoarm	33	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	8733033	8733465	AT4TE39000	.	+	ATREP11	Helitron	RC	432	short	841	high	5599359	chromoarm	285	no-CHH	no-CHH	.	.	.	.	.
Chr4	8733465	8733554	AT4TE39005	.	-	ATIS112A	Harbinger	DNA	89	tiny	173	medium	5599791	chromoarm	717	no-RdDM	no-CHH	.	.	.	.	.
Chr4	8737002	8737485	AT4TE39015	.	-	ATREP4	Helitron	RC	483	short	832	high	5603328	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	8740737	8740774	AT4TE39025	.	+	HELITRONY1B	Helitron	RC	37	tiny	414	high	5607063	chromoarm	690	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	8740774	8740796	AT4TE39030	.	-	ATREP6	Helitron	RC	22	tiny	181	medium	5607100	chromoarm	727	no-CHH	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	8740796	8742387	AT4TE39035	.	+	ATREP15	Helitron	RC	1591	short	1003	high	5607122	chromoarm	251	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	8743149	8743237	AT4TE39040	.	-	ATREP3	Helitron	RC	88	tiny	1439	high	5609475	chromoarm	0	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	8743237	8744263	AT4TE39045	.	-	HELITRONY1D	Helitron	RC	1026	short	756	high	5609563	chromoarm	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	8744264	8744286	AT4TE39050	.	-	ATREP3	Helitron	RC	23	tiny	1439	high	5610589	chromoarm	0	.	.	.	.	.	.	.
Chr4	8747595	8747651	AT4TE39060	.	-	ATHPOGO	Pogo	DNA	56	tiny	25	low	5613921	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	8749902	8749996	AT4TE39070	.	-	ATREP15	Helitron	RC	94	tiny	1003	high	5616228	chromoarm	1526	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	8749996	8750567	AT4TE39075	.	+	HELITRONY1E	Helitron	RC	571	short	447	high	5616322	chromoarm	955	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	8750567	8750940	AT4TE39080	.	+	ATREP5	Helitron	RC	373	short	624	high	5616893	chromoarm	582	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	8753356	8754284	AT4TE39090	.	-	HELITRONY1B	Helitron	RC	928	short	414	high	5619682	chromoarm	222	no-CHH	no-CHH	.	.	.	.	.
Chr4	8753528	8753797	AT4TE39095	.	+	ATTIRTA1	Tc1	DNA	269	short	95	medium	5619854	chromoarm	394	no-CHH	no-CHH	.	.	.	.	.
Chr4	8755723	8756712	AT4TE39105	.	-	ATREP19	.	DNA	989	short	189	medium	5622049	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	8756712	8756812	AT4TE39110	.	+	BRODYAGA2	MuDR	DNA	100	short	525	high	5623038	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	8758668	8759402	AT4TE39115	.	+	ATCOPIA42	Copia	LTR	734	short	35	low	5624994	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	8760976	8761547	AT4TE39120	.	-	ATHATN2	HAT	DNA	571	short	46	low	5627302	chromoarm	387	no-CHH	no-CHH	.	.	.	.	.
Chr4	8767588	8769685	AT4TE39150	.	+	ATREP10D	Helitron	RC	2097	medium	1295	high	5633914	chromoarm	499	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	8769685	8769930	AT4TE39155	.	+	ATREP10D	Helitron	RC	245	short	1295	high	5636011	chromoarm	254	no-CHH	no-CHH	.	.	.	.	.
Chr4	8772778	8773000	AT4TE39165	.	-	SIMPLEHAT1	HAT	DNA	222	short	56	medium	5639104	chromoarm	785	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	8773096	8773445	AT4TE39170	.	-	ATGP5	Gypsy	LTR	349	short	86	medium	5639422	chromoarm	340	no-CHH	no-CHH	.	.	.	.	.
Chr4	8774692	8774802	AT4TE39175	.	+	HELITRONY1B	Helitron	RC	110	short	414	high	5641018	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	8774803	8774825	AT4TE39180	.	-	HELITRONY3	Helitron	RC	23	tiny	1399	high	5641128	chromoarm	0	.	.	.	.	.	.	.
Chr4	8774825	8775566	AT4TE39185	.	-	ATDNA2T9C	MuDR	DNA	741	short	242	high	5641151	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	8776570	8776652	AT4TE39190	.	-	ATREP3	Helitron	RC	82	tiny	1439	high	5642896	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	8776652	8777878	AT4TE39195	.	+	ATREP11	Helitron	RC	1226	short	841	high	5642978	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	8777878	8778131	AT4TE39200	.	-	ATREP15	Helitron	RC	253	short	1003	high	5644204	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	8782111	8783572	AT4TE39220	.	+	ATREP11	Helitron	RC	1461	short	841	high	5648437	chromoarm	2426	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	8783864	8785474	AT4TE39225	.	-	ATREP4	Helitron	RC	1610	short	832	high	5650190	chromoarm	3287	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	8786100	8786406	AT4TE39230	.	+	ATCOPIA43	Copia	LTR	306	short	29	low	5652426	chromoarm	2355	no-CHH	no-CHH	.	.	.	.	.
Chr4	8794601	8794669	AT4TE39270	.	-	ATHATN4	HAT	DNA	68	tiny	56	medium	5660927	chromoarm	320	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	8798587	8798681	AT4TE39290	.	+	ATSINE4	.	SINE	94	tiny	98	medium	5664913	chromoarm	4306	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	8799203	8799568	AT4TE39295	.	+	HELITRONY1C	Helitron	RC	365	short	120	medium	5665529	chromoarm	4589	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	8799826	8799864	AT4TE39300	.	+	ATTIRX1A	.	DNA	38	tiny	63	medium	5666152	chromoarm	4293	no-RdDM	no-CHH	.	.	.	.	.
Chr4	8799864	8800838	AT4TE39305	.	+	HELITRONY3	Helitron	RC	974	short	1399	high	5666190	chromoarm	3319	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	8800851	8801034	AT4TE39310	.	-	ATCOPIA66	Copia	LTR	183	short	20	low	5667177	chromoarm	3123	no-CHH	no-CHH	.	.	.	.	.
Chr4	8801262	8801380	AT4TE39315	.	-	RathE3_cons	.	RathE3_cons	119	short	104	medium	5667587	chromoarm	2777	.	.	.	.	.	.	.
Chr4	8801531	8801996	AT4TE39320	.	+	HELITRONY1E	Helitron	RC	465	short	447	high	5667857	chromoarm	2161	no-CHH	no-CHH	.	.	.	.	.
Chr4	8802016	8802504	AT4TE39325	.	+	ATREP3	Helitron	RC	489	short	1439	high	5668341	chromoarm	1653	.	.	.	.	.	.	.
Chr4	8802504	8803782	AT4TE39330	.	+	HELITRONY3	Helitron	RC	1278	short	1399	high	5668830	chromoarm	375	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	8803782	8804028	AT4TE39335	.	+	HELITRONY3	Helitron	RC	246	short	1399	high	5670108	chromoarm	129	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	8804439	8804803	AT4TE39340	.	+	BRODYAGA1A	MuDR	DNA	364	short	586	high	5670765	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	8807845	8808299	AT4TE39350	.	-	VANDAL8	MuDR	DNA	454	short	123	medium	5674171	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	8809602	8809837	AT4TE39355	.	-	HELITRONY1D	Helitron	RC	235	short	756	high	5675928	chromoarm	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	8811406	8811502	AT4TE39360	.	+	VANDAL14	MuDR	DNA	96	tiny	25	low	5677732	chromoarm	618	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	8819462	8819834	AT4TE39400	.	-	HELITRONY1A	Helitron	RC	372	short	271	high	5685788	chromoarm	113	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	8819835	8819990	AT4TE39405	.	-	ATREP1	Helitron	RC	156	short	498	high	5686160	chromoarm	485	.	.	.	.	.	.	.
Chr4	8819990	8821573	AT4TE39410	.	-	ATREP1	Helitron	RC	1583	short	498	high	5686316	chromoarm	185	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	8821573	8821686	AT4TE39415	.	-	HELITRONY1D	Helitron	RC	113	short	756	high	5687899	chromoarm	72	no-CHH	no-CHH	.	.	.	.	.
Chr4	8832098	8832518	AT4TE39470	.	+	HELITRONY1B	Helitron	RC	420	short	414	high	5698424	chromoarm	744	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	8836470	8836501	AT4TE39490	.	-	ATREP13	Helitron	RC	31	tiny	106	medium	5702796	chromoarm	0	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	8836501	8837145	AT4TE39495	.	-	ATREP13	Helitron	RC	644	short	106	medium	5702827	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	8838868	8838988	AT4TE39500	.	-	ATHILA7	Gypsy	LTR	120	short	134	medium	5705194	chromoarm	406	no-CHH	no-CHH	.	.	.	.	.
Chr4	8839867	8839978	AT4TE39505	.	-	ATCOPIA68	Copia	LTR	111	short	43	low	5706193	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	8842035	8842095	AT4TE39515	.	-	ATREP3	Helitron	RC	60	tiny	1439	high	5708361	chromoarm	169	no-CHH	no-CHH	.	.	.	.	.
Chr4	8842095	8842130	AT4TE39520	.	-	ATREP15	Helitron	RC	35	tiny	1003	high	5708421	chromoarm	229	no-CHH	no-CHH	.	.	.	.	.
Chr4	8842130	8843471	AT4TE39525	.	-	ATREP15	Helitron	RC	1341	short	1003	high	5708456	chromoarm	189	no-CHH	no-CHH	.	.	.	.	.
Chr4	8855336	8856031	AT4TE39580	.	-	ATREP15	Helitron	RC	695	short	1003	high	5721662	chromoarm	1033	no-CHH	no-CHH	.	.	.	.	.
Chr4	8856031	8856067	AT4TE39585	.	+	ATREP3	Helitron	RC	36	tiny	1439	high	5722357	chromoarm	1027	no-CHH	no-CHH	.	.	.	.	.
Chr4	8858701	8859120	AT4TE39595	.	-	BOMZH1	MuDR	DNA	419	short	28	low	5725027	chromoarm	179	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	8860180	8860601	AT4TE39600	.	-	AT9TSD1	MuDR	DNA	421	short	55	medium	5726506	chromoarm	99	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	8869241	8869573	AT4TE39650	.	-	BRODYAGA1A	MuDR	DNA	332	short	586	high	5735567	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	8872105	8872840	AT4TE39660	.	-	ATREP1	Helitron	RC	735	short	498	high	5738431	chromoarm	553	no-CHH	no-CHH	.	.	.	.	.
Chr4	8882425	8883800	AT4TE39710	.	-	ATREP10D	Helitron	RC	1375	short	1295	high	5748751	chromoarm	417	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	8887776	8887848	AT4TE39730	.	+	ATREP11	Helitron	RC	72	tiny	841	high	5754102	chromoarm	522	no-CHH	no-CHH	.	.	.	.	.
Chr4	8887848	8888410	AT4TE39735	.	+	HELITRONY3	Helitron	RC	562	short	1399	high	5754174	chromoarm	594	no-CHH	no-CHH	.	.	.	.	.
Chr4	8888902	8889017	AT4TE39740	.	-	BRODYAGA1A	MuDR	DNA	115	short	586	high	5755228	chromoarm	1648	no-CHH	no-CHH	.	.	.	.	.
Chr4	8889017	8889713	AT4TE39745	.	-	ATREP3	Helitron	RC	696	short	1439	high	5755343	chromoarm	1763	no-CHH	no-CHH	.	.	.	.	.
Chr4	8898871	8899041	AT4TE39790	.	-	ATREP19	.	DNA	170	short	189	medium	5765197	chromoarm	13	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	8899041	8899077	AT4TE39795	.	-	ATREP4	Helitron	RC	36	tiny	832	high	5765367	chromoarm	183	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	8899078	8900012	AT4TE39800	.	+	ATREP1	Helitron	RC	934	short	498	high	5765404	chromoarm	220	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	8900012	8900125	AT4TE39805	.	+	HELITRONY1A	Helitron	RC	113	short	271	high	5766338	chromoarm	1154	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	8900125	8900190	AT4TE39810	.	+	ARNOLDY1	MuDR	DNA	65	tiny	237	high	5766451	chromoarm	1267	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	8901450	8907132	AT4TE39815	.	-	ATLINE1_2	L1	LINE	5682	long	41	low	5767776	chromoarm	2029	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	8907132	8907236	AT4TE39820	.	-	ATLINE1_2	L1	LINE	104	short	41	low	5773458	chromoarm	1925	no-RdDM	no-CHH	.	.	.	.	.
Chr4	8907263	8907296	AT4TE39825	.	-	VANDAL17	MuDR	DNA	33	tiny	178	medium	5773589	chromoarm	1865	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	8907296	8907701	AT4TE39830	.	+	ATREP5	Helitron	RC	405	short	624	high	5773622	chromoarm	1460	no-CHH	no-CHH	.	.	.	.	.
Chr4	8943307	8943565	AT4TE40020	.	-	ATREP10C	Helitron	RC	258	short	123	medium	5809633	chromoarm	1751	no-CHH	no-RdDM	.	.	.	.	.
Chr4	8943565	8944335	AT4TE40025	.	+	BRODYAGA2	MuDR	DNA	770	short	525	high	5809891	chromoarm	981	no-CHH	no-CHH	.	.	.	.	.
Chr4	8944335	8944393	AT4TE40030	.	-	ATREP10B	Helitron	RC	58	tiny	491	high	5810661	chromoarm	923	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	8946377	8946800	AT4TE40040	.	+	TAT1_ATH	Gypsy	LTR	423	short	87	medium	5812703	chromoarm	704	no-RdDM	no-CHH	.	.	.	.	.
Chr4	8947176	8947215	AT4TE40045	.	-	ATREP3	Helitron	RC	39	tiny	1439	high	5813502	chromoarm	1503	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	8947215	8947832	AT4TE40050	.	-	ATREP2	Helitron	RC	617	short	164	medium	5813541	chromoarm	1542	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	8947832	8947867	AT4TE40055	.	-	ATREP2A	Helitron	RC	35	tiny	116	medium	5814158	chromoarm	1701	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	8948514	8949117	AT4TE40060	.	+	ATMUN1	MuDR	DNA	603	short	107	medium	5814840	chromoarm	451	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	8957686	8959287	AT4TE40110	.	+	ATREP11	Helitron	RC	1601	short	841	high	5824012	chromoarm	472	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	8959622	8959840	AT4TE40115	.	+	ATENSPM6	En-Spm	DNA	218	short	151	medium	5825948	chromoarm	1879	PolIV-and-RDR6-RdDM	no-CHH	ExpressedAndAnnotated	8959621,8959621	8960232,8960297	+,+	transcript_id-"510dbc5e-4e5a-4116-977a-ec44cdf1dcbc|19",transcript_id-"094657a5-7ed1-4b36-b57b-472808f4a122|30"
Chr4	8960412	8960508	AT4TE40120	.	-	VANDAL6	MuDR	DNA	96	tiny	89	medium	5826738	chromoarm	1211	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	8977344	8977370	AT4TE40210	.	+	BRODYAGA1A	MuDR	DNA	27	tiny	586	high	5843669	chromoarm	132	.	.	.	.	.	.	.
Chr4	8977370	8977941	AT4TE40215	.	-	ATREP5	Helitron	RC	571	short	624	high	5843696	chromoarm	118	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	8979651	8979707	AT4TE40220	.	+	ATLINEIII	L1	LINE	56	tiny	196	medium	5845977	chromoarm	373	no-CHH	no-CHH	.	.	.	.	.
Chr4	9004571	9005445	AT4TE40350	.	+	HELITRONY2	Helitron	RC	874	short	198	medium	5870897	chromoarm	37	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	9005446	9005500	AT4TE40355	.	+	HELITRON2	Helitron	RC	55	tiny	194	medium	5871771	chromoarm	911	.	.	.	.	.	.	.
Chr4	9006665	9008164	AT4TE40360	.	-	ATCOPIA90	Copia	LTR	1499	short	6	low	5872991	chromoarm	207	no-CHH	no-CHH	.	.	.	.	.
Chr4	9008166	9008223	AT4TE40365	.	-	ATCOPIA85	Copia	LTR	57	tiny	7	low	5874492	chromoarm	148	no-CHH	no-CHH	.	.	.	.	.
Chr4	9010921	9010957	AT4TE40375	.	-	ATREP15	Helitron	RC	36	tiny	1003	high	5877247	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	9010957	9011067	AT4TE40380	.	+	ATHPOGON1	Pogo	DNA	110	short	174	medium	5877283	chromoarm	10	no-CHH	no-CHH	.	.	.	.	.
Chr4	9011067	9011844	AT4TE40385	.	+	ATHPOGON3	Pogo	DNA	777	short	118	medium	5877393	chromoarm	120	no-CHH	no-CHH	.	.	.	.	.
Chr4	9011844	9012163	AT4TE40390	.	-	ATREP4	Helitron	RC	319	short	832	high	5878170	chromoarm	605	no-CHH	no-CHH	.	.	.	.	.
Chr4	9017129	9017255	AT4TE40420	.	-	AT9NMU1	MuDR	DNA	126	short	45	low	5883455	chromoarm	151	no-CHH	no-CHH	.	.	.	.	.
Chr4	9034073	9034550	AT4TE40510	.	+	BRODYAGA1A	MuDR	DNA	477	short	586	high	5900399	chromoarm	730	no-CHH	no-CHH	.	.	.	.	.
Chr4	9034170	9034434	AT4TE40515	.	+	ATTIRTA1	Tc1	DNA	264	short	95	medium	5900496	chromoarm	827	no-CHH	no-CHH	.	.	.	.	.
Chr4	9034550	9034600	AT4TE40520	.	+	HELITRONY1D	Helitron	RC	50	tiny	756	high	5900876	chromoarm	1207	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	9035260	9035522	AT4TE40525	.	+	ATTIRTA1	Tc1	DNA	262	short	95	medium	5901586	chromoarm	821	no-CHH	no-RdDM	.	.	.	.	.
Chr4	9048690	9048982	AT4TE40590	.	-	ATHPOGON3	Pogo	DNA	292	short	118	medium	5915016	chromoarm	407	no-CHH	no-CHH	.	.	.	.	.
Chr4	9048989	9049044	AT4TE40595	.	-	RathE3_cons	.	RathE3_cons	55	tiny	104	medium	5915315	chromoarm	345	no-CHH	no-CHH	.	.	.	.	.
Chr4	9053061	9053086	AT4TE40610	.	+	ATREP1	Helitron	RC	26	tiny	498	high	5919386	chromoarm	40	.	.	.	.	.	.	.
Chr4	9053086	9054758	AT4TE40615	.	-	ARNOLDY1	MuDR	DNA	1672	short	237	high	5919412	chromoarm	66	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	9054758	9055083	AT4TE40620	.	+	ATREP15	Helitron	RC	325	short	1003	high	5921084	chromoarm	1738	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	9062900	9063215	AT4TE40660	.	-	ATHILA8B	Gypsy	LTR	315	short	78	medium	5929226	chromoarm	947	no-CHH	no-CHH	.	.	.	.	.
Chr4	9063447	9063902	AT4TE40665	.	-	HELITRONY2	Helitron	RC	455	short	198	medium	5929773	chromoarm	260	no-CHH	no-CHH	.	.	.	.	.
Chr4	9063902	9063995	AT4TE40670	.	+	ATREP10B	Helitron	RC	93	tiny	491	high	5930228	chromoarm	167	no-CHH	no-CHH	.	.	.	.	.
Chr4	9065769	9066480	AT4TE40675	.	-	HELITRONY3	Helitron	RC	711	short	1399	high	5932095	chromoarm	1337	no-CHH	no-CHH	.	.	.	.	.
Chr4	9068940	9072918	AT4TE40685	.	+	ATCOPIA48	Copia	LTR	3978	medium	15	low	5935266	chromoarm	283	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr4	9075041	9078896	AT4TE40695	.	+	ATCOPIA48	Copia	LTR	3855	medium	15	low	5941367	chromoarm	232	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	9078907	9079465	AT4TE40700	.	-	ATREP13	Helitron	RC	559	short	106	medium	5945232	chromoarm	1374	.	.	.	.	.	.	.
Chr4	9079692	9079953	AT4TE40705	.	-	ATCOPIA5	Copia	LTR	261	short	16	low	5946018	chromoarm	886	no-CHH	no-CHH	.	.	.	.	.
Chr4	9079967	9080333	AT4TE40710	.	-	ATCOPIA21	Copia	LTR	366	short	14	low	5946293	chromoarm	506	no-CHH	no-CHH	.	.	.	.	.
Chr4	9082041	9082599	AT4TE40715	.	-	ATREP3	Helitron	RC	558	short	1439	high	5948367	chromoarm	796	no-CHH	no-CHH	.	.	.	.	.
Chr4	9085920	9085975	AT4TE40725	.	+	ATLINE2	L1	LINE	55	tiny	138	medium	5952246	chromoarm	1206	no-CHH	no-CHH	.	.	.	.	.
Chr4	9085975	9086453	AT4TE40730	.	+	BRODYAGA1	MuDR	DNA	478	short	251	high	5952301	chromoarm	728	no-CHH	no-CHH	.	.	.	.	.
Chr4	9088255	9089414	AT4TE40735	.	+	ATREP4	Helitron	RC	1159	short	832	high	5954581	chromoarm	491	no-CHH	no-CHH	.	.	.	.	.
Chr4	9089414	9089624	AT4TE40740	.	+	ATDNA2T9C	MuDR	DNA	210	short	242	high	5955740	chromoarm	281	no-CHH	no-CHH	.	.	.	.	.
Chr4	9111568	9112212	AT4TE40860	.	-	ATREP2	Helitron	RC	644	short	164	medium	5977894	chromoarm	766	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	9112212	9112420	AT4TE40865	.	-	ATREP1	Helitron	RC	208	short	498	high	5978538	chromoarm	558	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr4	9112420	9112818	AT4TE40870	.	+	HELITRONY1B	Helitron	RC	398	short	414	high	5978746	chromoarm	160	no-CHH	no-CHH	.	.	.	.	.
Chr4	9145465	9145542	AT4TE41050	.	+	ATREP15	Helitron	RC	77	tiny	1003	high	6011791	chromoarm	1109	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	9145542	9146066	AT4TE41055	.	-	ATREP9	Helitron	RC	524	short	201	high	6011868	chromoarm	1186	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	9146066	9147273	AT4TE41060	.	+	ATREP2A	Helitron	RC	1207	short	116	medium	6012392	chromoarm	951	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	9147273	9147294	AT4TE41065	.	+	ATREP14	Helitron	RC	21	tiny	47	low	6013599	chromoarm	930	no-CHH	no-CHH	.	.	.	.	.
Chr4	9163739	9164160	AT4TE41150	.	+	HELITRONY3	Helitron	RC	421	short	1399	high	6030065	chromoarm	6	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	9173929	9174232	AT4TE41200	.	+	ATMU7	MuDR	DNA	303	short	32	low	6040255	chromoarm	279	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	9174232	9174648	AT4TE41205	.	-	ATTIRX1B	.	DNA	416	short	44	low	6040558	chromoarm	582	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	9174935	9175498	AT4TE41210	.	+	ATREP9	Helitron	RC	563	short	201	high	6041261	chromoarm	150	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	9175499	9175652	AT4TE41215	.	+	HELITRONY3	Helitron	RC	153	short	1399	high	6041825	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	9188585	9188607	AT4TE41280	.	-	ATREP3	Helitron	RC	23	tiny	1439	high	6054910	chromoarm	2137	.	.	.	.	.	.	.
Chr4	9188607	9188718	AT4TE41285	.	-	VANDAL8	MuDR	DNA	111	short	123	medium	6054933	chromoarm	2160	no-RdDM	no-CHH	.	.	.	.	.
Chr4	9188718	9189185	AT4TE41290	.	+	ATREP2A	Helitron	RC	467	short	116	medium	6055044	chromoarm	2271	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	9189185	9190196	AT4TE41295	.	-	ATREP11A	Helitron	RC	1011	short	95	medium	6055511	chromoarm	2139	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	9190200	9190285	AT4TE41300	.	+	ATREP2A	Helitron	RC	85	tiny	116	medium	6056526	chromoarm	2050	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	9190285	9190524	AT4TE41305	.	-	ATREP11	Helitron	RC	239	short	841	high	6056611	chromoarm	1811	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	9192436	9192544	AT4TE41315	.	-	ATREP10D	Helitron	RC	108	short	1295	high	6058762	chromoarm	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	9192555	9193660	AT4TE41320	.	+	ATREP1	Helitron	RC	1105	short	498	high	6058881	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	9193660	9194345	AT4TE41325	.	+	ATREP3	Helitron	RC	685	short	1439	high	6059986	chromoarm	1092	no-CHH	no-CHH	.	.	.	.	.
Chr4	9194345	9194384	AT4TE41330	.	+	ATREP10D	Helitron	RC	39	tiny	1295	high	6060671	chromoarm	1217	no-CHH	no-CHH	.	.	.	.	.
Chr4	9194384	9194422	AT4TE41335	.	+	HELITRONY1B	Helitron	RC	38	tiny	414	high	6060710	chromoarm	1179	no-CHH	no-CHH	.	.	.	.	.
Chr4	9217407	9217442	AT4TE41450	.	-	ATREP13	Helitron	RC	35	tiny	106	medium	6083733	chromoarm	1193	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	9217442	9217690	AT4TE41455	.	-	ATREP13	Helitron	RC	248	short	106	medium	6083768	chromoarm	945	no-CHH	no-CHH	.	.	.	.	.
Chr4	9266227	9266443	AT4TE41710	.	+	RP1_AT	.	DNA	216	short	87	medium	6132553	chromoarm	452	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	9283369	9283467	AT4TE41800	.	-	HELITRONY3	Helitron	RC	98	tiny	1399	high	6149695	chromoarm	2161	no-CHH	no-CHH	.	.	.	.	.
Chr4	9283616	9283768	AT4TE41805	.	+	ATREP10B	Helitron	RC	152	short	491	high	6149942	chromoarm	1860	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	9283768	9284434	AT4TE41810	.	+	ATREP13	Helitron	RC	666	short	106	medium	6150094	chromoarm	1194	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	9284434	9284782	AT4TE41815	.	+	HELITRONY3	Helitron	RC	348	short	1399	high	6150760	chromoarm	846	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	9284782	9285161	AT4TE41820	.	+	META1	Copia	LTR	379	short	138	medium	6151108	chromoarm	467	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	9320298	9320585	AT4TE42010	.	+	ATCOPIA78	Copia	LTR	287	short	24	low	6186624	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	9330768	9331402	AT4TE42070	.	-	ATHILA6A	Gypsy	LTR	634	short	247	high	6197094	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	9336091	9336153	AT4TE42100	.	-	BRODYAGA1A	MuDR	DNA	62	tiny	586	high	6202417	chromoarm	207	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	9336153	9336247	AT4TE42105	.	+	ATHPOGON3	Pogo	DNA	94	tiny	118	medium	6202479	chromoarm	269	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	9336247	9336724	AT4TE42110	.	+	ATREP4	Helitron	RC	477	short	832	high	6202573	chromoarm	90	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	9345701	9346228	AT4TE42160	.	+	ATREP11	Helitron	RC	527	short	841	high	6212027	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	9346228	9346402	AT4TE42165	.	-	ATREP1	Helitron	RC	174	short	498	high	6212554	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	9357138	9357370	AT4TE42220	.	+	ATSINE4	.	SINE	232	short	98	medium	6223464	chromoarm	814	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	9368716	9369387	AT4TE42280	.	+	ATREP13	Helitron	RC	671	short	106	medium	6235042	chromoarm	226	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	9401722	9401995	AT4TE42450	.	+	ATLINE1_3A	L1	LINE	273	short	160	medium	6268048	chromoarm	407	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	9406036	9406667	AT4TE42470	.	+	ATREP1	Helitron	RC	631	short	498	high	6272362	chromoarm	33	no-CHH	no-CHH	.	.	.	.	.
Chr4	9424101	9424547	AT4TE42560	.	-	HELITRONY3	Helitron	RC	446	short	1399	high	6290427	chromoarm	382	no-CHH	no-CHH	.	.	.	.	.
Chr4	9432584	9432718	AT4TE42600	.	+	ATDNAI27T9A	MuDR	DNA	134	short	116	medium	6298910	chromoarm	793	no-CHH	no-CHH	.	.	.	.	.
Chr4	9432892	9433519	AT4TE42605	.	+	ATHATN10	HAT	DNA	628	short	48	low	6299217	chromoarm	1051	.	.	.	.	.	.	.
Chr4	9438195	9438541	AT4TE42630	.	+	ATREP3	Helitron	RC	346	short	1439	high	6304521	chromoarm	1027	no-CHH	no-CHH	.	.	.	.	.
Chr4	9438541	9440095	AT4TE42635	.	+	ATREP3	Helitron	RC	1554	short	1439	high	6304867	chromoarm	1373	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	9440095	9440510	AT4TE42640	.	-	BRODYAGA1A	MuDR	DNA	415	short	586	high	6306421	chromoarm	2927	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	9440958	9441786	AT4TE42645	.	-	ATREP10B	Helitron	RC	828	short	491	high	6307284	chromoarm	3790	no-CHH	no-CHH	.	.	.	.	.
Chr4	9441786	9441945	AT4TE42650	.	+	ATREP3	Helitron	RC	159	short	1439	high	6308112	chromoarm	4618	no-CHH	no-CHH	.	.	.	.	.
Chr4	9447858	9448018	AT4TE42680	.	+	HELITRONY2	Helitron	RC	160	short	198	medium	6314184	chromoarm	1272	no-CHH	no-CHH	.	.	.	.	.
Chr4	9461646	9462009	AT4TE42750	.	-	HELITRONY1D	Helitron	RC	363	short	756	high	6327972	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	9463545	9464341	AT4TE42755	.	-	ATREP10D	Helitron	RC	796	short	1295	high	6329871	chromoarm	1292	no-CHH	no-CHH	.	.	.	.	.
Chr4	9483835	9488588	AT4TE42860	.	-	ATCOPIA4	Copia	LTR	4753	medium	11	low	6350161	chromoarm	0	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr4	9492163	9492248	AT4TE42870	.	-	ATREP1	Helitron	RC	85	tiny	498	high	6358489	chromoarm	0	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	9492248	9493209	AT4TE42875	.	+	ATREP1	Helitron	RC	961	short	498	high	6358574	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	9493209	9495063	AT4TE42880	.	+	ATREP5	Helitron	RC	1854	short	624	high	6359535	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	9495063	9495149	AT4TE42885	.	-	ATREP15	Helitron	RC	86	tiny	1003	high	6361389	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	9495149	9495229	AT4TE42890	.	-	ATREP10B	Helitron	RC	80	tiny	491	high	6361475	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	9496122	9496399	AT4TE42895	.	-	ATCOPIA93	Copia	LTR	277	short	10	low	6362448	chromoarm	150	no-CHH	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	9497348	9496193	-	transcript_id-"bf4b36fc-438a-46bd-b760-693b3d635067|19"
Chr4	9498801	9499350	AT4TE42905	.	-	ATCOPIA74	Copia	LTR	549	short	7	low	6365127	chromoarm	1155	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	9508381	9512986	AT4TE42950	.	-	ATGP2	Gypsy	LTR	4605	medium	48	low	6374707	chromoarm	0	no-RdDM	no-RdDM	ExpressedAndAnnotated	9508719	9508554	-	transcript_id-"05b38df5-fbc9-4e7d-8821-525defaba77f|3"
Chr4	9522548	9522643	AT4TE43000	.	-	ATREP19	.	DNA	95	tiny	189	medium	6388874	chromoarm	0	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	9522643	9522667	AT4TE43005	.	-	HELITRONY1E	Helitron	RC	24	tiny	447	high	6388969	chromoarm	0	no-CHH	no-RdDM	.	.	.	.	.
Chr4	9522667	9523966	AT4TE43010	.	-	HELITRONY1A	Helitron	RC	1299	short	271	high	6388993	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	9523966	9524007	AT4TE43015	.	+	ATREP10D	Helitron	RC	41	tiny	1295	high	6390292	chromoarm	0	PolIV-and-RDR6-RdDM	RDR6-RdDM	.	.	.	.	.
Chr4	9530640	9530924	AT4TE43050	.	+	TAG2	HAT	DNA	284	short	86	medium	6396966	chromoarm	525	no-CHH	no-CHH	.	.	.	.	.
Chr4	9547241	9547412	AT4TE43140	.	+	ATCOPIA24	Copia	LTR	171	short	27	low	6413567	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	9560657	9561027	AT4TE43210	.	-	ATDNA12T3_2	.	DNA	370	short	660	high	6426983	chromoarm	0	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	9563468	9564365	AT4TE43220	.	+	ATREP3	Helitron	RC	897	short	1439	high	6429794	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	9565331	9565385	AT4TE43225	.	-	ATREP4	Helitron	RC	54	tiny	832	high	6431657	chromoarm	106	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	9565385	9565521	AT4TE43230	.	-	ATREP3	Helitron	RC	136	short	1439	high	6431711	chromoarm	160	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	9565521	9566734	AT4TE43235	.	-	ATREP15	Helitron	RC	1213	short	1003	high	6431847	chromoarm	296	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	9566734	9566960	AT4TE43240	.	-	ATREP4	Helitron	RC	226	short	832	high	6433060	chromoarm	85	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	9570498	9575603	AT4TE43250	.	+	META1	Copia	LTR	5105	long	138	medium	6436824	chromoarm	585	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	9575603	9575651	AT4TE43255	.	+	ATCOPIA28	Copia	LTR	48	tiny	81	medium	6441929	chromoarm	790	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	9598510	9598606	AT4TE43370	.	+	TSCL	.	LINE?	96	tiny	81	medium	6464836	chromoarm	444	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	9601930	9602203	AT4TE43380	.	+	ATENSPM6	En-Spm	DNA	273	short	151	medium	6468256	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	9654729	9655347	AT4TE43660	.	+	HELITRONY1D	Helitron	RC	618	short	756	high	6521055	chromoarm	472	no-CHH	no-CHH	.	.	.	.	.
Chr4	9686957	9687356	AT4TE43830	.	+	ATCOPIA38	Copia	LTR	399	short	9	low	6553283	chromoarm	109	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	9687708	9688988	AT4TE43835	.	-	HELITRONY1B	Helitron	RC	1280	short	414	high	6554034	chromoarm	274	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	9688988	9689072	AT4TE43840	.	-	ATREP15	Helitron	RC	84	tiny	1003	high	6555314	chromoarm	190	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	9726937	9727239	AT4TE44040	.	-	HELITRONY1D	Helitron	RC	302	short	756	high	6593263	chromoarm	136	no-CHH	no-CHH	.	.	.	.	.
Chr4	9727239	9727677	AT4TE44045	.	-	ATREP15	Helitron	RC	438	short	1003	high	6593565	chromoarm	170	no-CHH	no-CHH	.	.	.	.	.
Chr4	9727677	9727705	AT4TE44050	.	-	ATTIR16T3A	.	DNA	28	tiny	106	medium	6594003	chromoarm	142	no-CHH	no-CHH	.	.	.	.	.
Chr4	9732597	9737733	AT4TE44080	.	-	ATCOPIA1	Copia	LTR	5136	long	11	low	6598923	chromoarm	324	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	9737571	9735446	-	transcript_id-"a98b2c57-961e-4be0-9772-5a4e10424ae4|16"
Chr4	9755882	9755924	AT4TE44180	.	-	ATREP1	Helitron	RC	42	tiny	498	high	6622208	chromoarm	2061	no-CHH	no-CHH	.	.	.	.	.
Chr4	9755924	9756114	AT4TE44185	.	+	ATDNA2T9C	MuDR	DNA	190	short	242	high	6622250	chromoarm	2103	no-CHH	no-CHH	.	.	.	.	.
Chr4	9756114	9756980	AT4TE44190	.	-	HELITRONY1D	Helitron	RC	866	short	756	high	6622440	chromoarm	2293	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	9756980	9757101	AT4TE44195	.	+	RathE1_cons	.	RathE1_cons	121	short	213	high	6623306	chromoarm	2303	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	9761259	9761702	AT4TE44210	.	-	ATREP10D	Helitron	RC	443	short	1295	high	6627585	chromoarm	1048	no-CHH	no-CHH	.	.	.	.	.
Chr4	9761702	9761768	AT4TE44215	.	-	ATREP4	Helitron	RC	66	tiny	832	high	6628028	chromoarm	1491	no-CHH	no-CHH	.	.	.	.	.
Chr4	9761768	9763813	AT4TE44220	.	-	ATREP3	Helitron	RC	2045	medium	1439	high	6628094	chromoarm	562	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	9763813	9763890	AT4TE44225	.	-	ATREP3	Helitron	RC	77	tiny	1439	high	6630139	chromoarm	485	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	9763890	9763951	AT4TE44230	.	+	BRODYAGA2	MuDR	DNA	61	tiny	525	high	6630216	chromoarm	424	no-CHH	no-CHH	.	.	.	.	.
Chr4	9763951	9763980	AT4TE44235	.	-	ATREP15	Helitron	RC	29	tiny	1003	high	6630277	chromoarm	395	no-CHH	no-CHH	.	.	.	.	.
Chr4	9770320	9771100	AT4TE44260	.	-	BRODYAGA2	MuDR	DNA	780	short	525	high	6636646	chromoarm	395	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr4	9771100	9771301	AT4TE44265	.	+	HELITRONY1B	Helitron	RC	201	short	414	high	6637426	chromoarm	194	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	9794406	9794730	AT4TE44380	.	-	ATDNAI27T9A	MuDR	DNA	324	short	116	medium	6660732	chromoarm	1147	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	9795616	9795643	AT4TE44385	.	-	SIMPLEHAT1	HAT	DNA	27	tiny	56	medium	6661942	chromoarm	2357	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	9795643	9797434	AT4TE44390	.	-	SIMPLEHAT1	HAT	DNA	1791	short	56	medium	6661969	chromoarm	2384	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	9797164	9795880	-	transcript_id-"5cef12a4-565a-4e16-964e-8811c9462160|44"
Chr4	9795929	9796135	AT4TE44395	.	-	ATHAT1	HAT	DNA	206	short	105	medium	6662255	chromoarm	2670	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	9797164	9795880	-	transcript_id-"5cef12a4-565a-4e16-964e-8811c9462160|44"
Chr4	9796135	9796370	AT4TE44400	.	-	ATHAT1	HAT	DNA	235	short	105	medium	6662461	chromoarm	2876	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	9797515	9797614	AT4TE44405	.	-	ATDNAI27T9C	MuDR	DNA	99	tiny	108	medium	6663841	chromoarm	3228	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	9797696	9797894	AT4TE44410	.	-	LIMPET1	MuDR	DNA	198	short	116	medium	6664022	chromoarm	2948	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	9798329	9798441	AT4TE44415	.	-	ATDNAI27T9A	MuDR	DNA	112	short	116	medium	6664655	chromoarm	2401	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	9798486	9798602	AT4TE44420	.	-	ATDNAI27T9A	MuDR	DNA	116	short	116	medium	6664812	chromoarm	2240	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	9803027	9803531	AT4TE44440	.	+	ATREP10B	Helitron	RC	505	short	491	high	6669352	chromoarm	227	.	.	.	.	.	.	.
Chr4	9840414	9840608	AT4TE44640	.	-	HELITRONY3	Helitron	RC	194	short	1399	high	6706740	chromoarm	2294	no-CHH	no-CHH	.	.	.	.	.
Chr4	9840608	9840807	AT4TE44645	.	-	ATREP4	Helitron	RC	199	short	832	high	6706934	chromoarm	2095	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	9840807	9842607	AT4TE44650	.	-	ATREP3	Helitron	RC	1800	short	1439	high	6707133	chromoarm	295	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	9842607	9842841	AT4TE44655	.	-	ATREP4	Helitron	RC	234	short	832	high	6708933	chromoarm	61	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	9860255	9860635	AT4TE44740	.	-	HELITRONY3	Helitron	RC	380	short	1399	high	6726581	chromoarm	47	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	9860635	9861576	AT4TE44745	.	+	ATHPOGON1	Pogo	DNA	941	short	174	medium	6726961	chromoarm	19	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	9861576	9861600	AT4TE44750	.	-	HELITRONY3	Helitron	RC	24	tiny	1399	high	6727902	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	9861600	9861653	AT4TE44755	.	+	HELITRONY1D	Helitron	RC	53	tiny	756	high	6727926	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	9874689	9876146	AT4TE44820	.	+	ATREP10D	Helitron	RC	1457	short	1295	high	6741015	chromoarm	908	no-CHH	no-CHH	.	.	.	.	.
Chr4	9890294	9891265	AT4TE44900	.	-	ATREP19	.	DNA	971	short	189	medium	6756620	chromoarm	159	no-CHH	no-CHH	.	.	.	.	.
Chr4	9902445	9902561	AT4TE44960	.	-	ATREP3	Helitron	RC	116	short	1439	high	6768771	chromoarm	4356	no-CHH	no-CHH	.	.	.	.	.
Chr4	9902561	9903700	AT4TE44965	.	+	ATREP11	Helitron	RC	1139	short	841	high	6768887	chromoarm	3217	no-CHH	no-CHH	.	.	.	.	.
Chr4	9906365	9906833	AT4TE44975	.	+	BRODYAGA1A	MuDR	DNA	468	short	586	high	6772691	chromoarm	84	no-CHH	no-CHH	.	.	.	.	.
Chr4	9908927	9908995	AT4TE44985	.	-	META1	Copia	LTR	68	tiny	138	medium	6775253	chromoarm	1395	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	9908995	9914045	AT4TE44990	.	-	META1	Copia	LTR	5050	long	138	medium	6775321	chromoarm	1463	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	9921636	9921687	AT4TE45030	.	+	ATREP15	Helitron	RC	51	tiny	1003	high	6787962	chromoarm	1302	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	9921687	9922953	AT4TE45035	.	+	ATREP6	Helitron	RC	1266	short	181	medium	6788013	chromoarm	36	no-CHH	no-CHH	.	.	.	.	.
Chr4	9922953	9922975	AT4TE45040	.	+	ATCOPIA30	Copia	LTR	22	tiny	33	low	6789279	chromoarm	14	no-CHH	no-CHH	.	.	.	.	.
Chr4	9923975	9924663	AT4TE45045	.	-	ATMUN1	MuDR	DNA	688	short	107	medium	6790301	chromoarm	34	no-CHH	no-CHH	.	.	.	.	.
Chr4	9927872	9928054	AT4TE45055	.	-	RathE1_cons	.	RathE1_cons	182	short	213	high	6794198	chromoarm	737	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	9944977	9945036	AT4TE45140	.	+	ATREP10D	Helitron	RC	59	tiny	1295	high	6811303	chromoarm	1009	no-CHH	no-CHH	.	.	.	.	.
Chr4	9945036	9945056	AT4TE45145	.	-	ATREP5	Helitron	RC	20	tiny	624	high	6811362	chromoarm	989	no-CHH	no-CHH	.	.	.	.	.
Chr4	9945056	9945863	AT4TE45150	.	+	HELITRONY1B	Helitron	RC	807	short	414	high	6811382	chromoarm	182	no-CHH	no-CHH	.	.	.	.	.
Chr4	9948533	9948856	AT4TE45160	.	-	ATDNA2T9C	MuDR	DNA	323	short	242	high	6814859	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	9954150	9958038	AT4TE45190	.	+	VANDAL8	MuDR	DNA	3888	medium	123	medium	6820476	chromoarm	461	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	9960644	9960891	AT4TE45200	.	-	ATREP9	Helitron	RC	247	short	201	high	6826970	chromoarm	2329	no-CHH	no-CHH	.	.	.	.	.
Chr4	9960891	9960912	AT4TE45205	.	-	ATREP1	Helitron	RC	21	tiny	498	high	6827217	chromoarm	2308	no-CHH	no-CHH	.	.	.	.	.
Chr4	9960912	9961912	AT4TE45210	.	+	ATREP4	Helitron	RC	1000	short	832	high	6827238	chromoarm	1308	no-CHH	no-CHH	.	.	.	.	.
Chr4	9962228	9962293	AT4TE45215	.	+	META1	Copia	LTR	65	tiny	138	medium	6828554	chromoarm	927	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	9962293	9962863	AT4TE45220	.	+	ATREP10D	Helitron	RC	570	short	1295	high	6828619	chromoarm	357	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	9962863	9962964	AT4TE45225	.	+	META1	Copia	LTR	101	short	138	medium	6829189	chromoarm	256	no-CHH	no-CHH	.	.	.	.	.
Chr4	9981117	9981841	AT4TE45320	.	-	ATREP19	.	DNA	724	short	189	medium	6847443	chromoarm	1079	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	9981844	9981924	AT4TE45325	.	-	ATENSPM10	En-Spm	DNA	80	tiny	81	medium	6848170	chromoarm	1806	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr4	9987180	9987347	AT4TE45350	.	-	VANDAL22	MuDR	DNA	167	short	48	low	6853506	chromoarm	1451	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	9988488	9988582	AT4TE45355	.	+	ATREP4	Helitron	RC	94	tiny	832	high	6854814	chromoarm	893	no-CHH	no-CHH	.	.	.	.	.
Chr4	9988582	9989464	AT4TE45360	.	-	ATREP11	Helitron	RC	882	short	841	high	6854908	chromoarm	11	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	9990157	9990336	AT4TE45365	.	+	ATMU4	MuDR	DNA	179	short	14	low	6856483	chromoarm	21	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	10002740	10002767	AT4TE45430	.	-	ATENSPM10	En-Spm	DNA	27	tiny	81	medium	6869066	chromoarm	970	no-CHH	no-CHH	.	.	.	.	.
Chr4	10002767	10002876	AT4TE45435	.	+	BRODYAGA1A	MuDR	DNA	109	short	586	high	6869093	chromoarm	861	no-CHH	no-CHH	.	.	.	.	.
Chr4	10010922	10011068	AT4TE45470	.	+	ATLINE1_5	L1	LINE	146	short	91	medium	6877248	chromoarm	1781	no-CHH	no-CHH	.	.	.	.	.
Chr4	10011122	10011295	AT4TE45475	.	-	RathE3_cons	.	RathE3_cons	173	short	104	medium	6877448	chromoarm	1554	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	10011308	10011495	AT4TE45480	.	+	ATLINE1_4	L1	LINE	187	short	102	medium	6877634	chromoarm	1354	no-CHH	no-CHH	.	.	.	.	.
Chr4	10054629	10054872	AT4TE45710	.	+	ATTIRTA1	Tc1	DNA	243	short	95	medium	6920955	chromoarm	823	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	10102364	10102691	AT4TE45970	.	+	ATCOPIA65	Copia	LTR	327	short	34	low	6968690	chromoarm	467	no-CHH	no-CHH	.	.	.	.	.
Chr4	10108816	10108978	AT4TE46000	.	+	ATHATN6	HAT	DNA	162	short	43	low	6975142	chromoarm	1067	no-CHH	no-CHH	.	.	.	.	.
Chr4	10111150	10111799	AT4TE46010	.	-	ATREP10B	Helitron	RC	649	short	491	high	6977476	chromoarm	3401	no-CHH	no-CHH	.	.	.	.	.
Chr4	10137850	10138486	AT4TE46150	.	-	ATREP10D	Helitron	RC	636	short	1295	high	7004176	chromoarm	4185	no-CHH	no-CHH	.	.	.	.	.
Chr4	10141759	10142335	AT4TE46160	.	+	BRODYAGA1	MuDR	DNA	576	short	251	high	7008085	chromoarm	336	no-CHH	no-CHH	.	.	.	.	.
Chr4	10157184	10157479	AT4TE46240	.	-	BRODYAGA1A	MuDR	DNA	295	short	586	high	7023510	chromoarm	477	no-CHH	no-RdDM	.	.	.	.	.
Chr4	10161825	10162212	AT4TE46260	.	+	BRODYAGA1A	MuDR	DNA	387	short	586	high	7028151	chromoarm	999	no-CHH	no-CHH	.	.	.	.	.
Chr4	10163791	10163946	AT4TE46265	.	-	ATDNAI27T9C	MuDR	DNA	155	short	108	medium	7030117	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	10166391	10166873	AT4TE46275	.	+	HELITRONY1E	Helitron	RC	482	short	447	high	7032717	chromoarm	2082	no-CHH	no-CHH	.	.	.	.	.
Chr4	10171521	10171823	AT4TE46300	.	-	ATREP16	MuDR	DNA	302	short	47	low	7037847	chromoarm	300	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	10171926	10174176	AT4TE46305	.	+	Unassigned	.	Unassigned	2250	medium	.	low	7038252	chromoarm	705	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	10174378	10175159	AT4TE46310	.	-	VANDAL12	MuDR	DNA	781	short	37	low	7040704	chromoarm	1104	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	10175037	10174320	-	transcript_id-"3d88c8ce-d51a-42b2-b4d8-b8e97fe14356|15"
Chr4	10184470	10184920	AT4TE46360	.	+	ATREP1	Helitron	RC	450	short	498	high	7050796	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	10190082	10190240	AT4TE46390	.	+	VANDAL13	MuDR	DNA	158	short	38	low	7056408	chromoarm	9	no-CHH	no-CHH	.	.	.	.	.
Chr4	10192585	10192711	AT4TE46400	.	+	RathE1_cons	.	RathE1_cons	126	short	213	high	7058911	chromoarm	272	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	10247884	10248132	AT4TE46700	.	+	ATHATN9	HAT	DNA	248	short	12	low	7114210	chromoarm	512	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	10249510	10250659	AT4TE46705	.	+	ATREP10D	Helitron	RC	1149	short	1295	high	7115836	chromoarm	134	no-CHH	no-CHH	.	.	.	.	.
Chr4	10252870	10253254	AT4TE46715	.	+	ATREP1	Helitron	RC	384	short	498	high	7119196	chromoarm	1104	no-CHH	no-CHH	.	.	.	.	.
Chr4	10264466	10264992	AT4TE46770	.	+	ATREP9	Helitron	RC	526	short	201	high	7130792	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	10269485	10269602	AT4TE46790	.	-	ATREP5	Helitron	RC	117	short	624	high	7135811	chromoarm	3982	no-CHH	no-CHH	.	.	.	.	.
Chr4	10269603	10269632	AT4TE46795	.	-	HELITRONY3	Helitron	RC	30	tiny	1399	high	7135928	chromoarm	3952	.	.	.	.	.	.	.
Chr4	10269632	10271678	AT4TE46800	.	-	HELITRONY3	Helitron	RC	2046	medium	1399	high	7135958	chromoarm	1906	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	10272475	10272587	AT4TE46805	.	+	RathE2_cons	.	RathE2_cons	112	short	74	medium	7138801	chromoarm	997	no-CHH	no-CHH	.	.	.	.	.
Chr4	10276290	10276562	AT4TE46815	.	-	VANDAL17	MuDR	DNA	272	short	178	medium	7142616	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	10276771	10276919	AT4TE46820	.	-	ATCOPIA26	Copia	LTR	148	short	19	low	7143097	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	10285373	10285401	AT4TE46870	.	-	ATREP15	Helitron	RC	28	tiny	1003	high	7151699	chromoarm	706	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	10285401	10286986	AT4TE46875	.	-	ATREP15	Helitron	RC	1585	short	1003	high	7151727	chromoarm	734	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	10286986	10287176	AT4TE46880	.	+	ATREP15	Helitron	RC	190	short	1003	high	7153312	chromoarm	1933	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	10287176	10287287	AT4TE46885	.	+	HELITRONY1D	Helitron	RC	111	short	756	high	7153502	chromoarm	1822	no-CHH	no-CHH	.	.	.	.	.
Chr4	10294199	10294372	AT4TE46920	.	+	RathE2_cons	.	RathE2_cons	173	short	74	medium	7160525	chromoarm	2101	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	10299287	10299776	AT4TE46950	.	-	ATREP3	Helitron	RC	489	short	1439	high	7165613	chromoarm	168	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	10308925	10309531	AT4TE47000	.	-	ATHILA6A	Gypsy	LTR	606	short	247	high	7175251	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	10317133	10317503	AT4TE47040	.	+	ATREP15	Helitron	RC	370	short	1003	high	7183459	chromoarm	281	no-CHH	no-CHH	.	.	.	.	.
Chr4	10335438	10336256	AT4TE47140	.	+	ATREP10D	Helitron	RC	818	short	1295	high	7201764	chromoarm	156	no-CHH	no-CHH	.	.	.	.	.
Chr4	10345637	10346083	AT4TE47190	.	-	ATREP3	Helitron	RC	446	short	1439	high	7211963	chromoarm	49	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	10351269	10351432	AT4TE47220	.	-	ATREP11	Helitron	RC	163	short	841	high	7217595	chromoarm	1341	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	10351432	10351867	AT4TE47225	.	-	HELITRONY1B	Helitron	RC	435	short	414	high	7217758	chromoarm	906	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	10351867	10351890	AT4TE47230	.	-	ATREP3	Helitron	RC	23	tiny	1439	high	7218193	chromoarm	883	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	10351890	10351992	AT4TE47235	.	+	ATREP10D	Helitron	RC	102	short	1295	high	7218216	chromoarm	781	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	10359457	10359610	AT4TE47270	.	+	ATSINE4	.	SINE	153	short	98	medium	7225783	chromoarm	379	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	10370459	10370594	AT4TE47330	.	-	RathE3_cons	.	RathE3_cons	135	short	104	medium	7236785	chromoarm	202	no-CHH	no-CHH	.	.	.	.	.
Chr4	10394591	10394779	AT4TE47460	.	-	ATMU2	MuDR	DNA	188	short	64	medium	7260917	chromoarm	926	no-CHH	no-CHH	.	.	.	.	.
Chr4	10395146	10395338	AT4TE47465	.	-	ATREP4	Helitron	RC	192	short	832	high	7261472	chromoarm	1481	no-CHH	no-CHH	.	.	.	.	.
Chr4	10395338	10397655	AT4TE47470	.	-	ATREP3	Helitron	RC	2317	medium	1439	high	7261664	chromoarm	1317	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	10397655	10398098	AT4TE47475	.	+	ATREP4	Helitron	RC	443	short	832	high	7263981	chromoarm	874	no-CHH	no-CHH	.	.	.	.	.
Chr4	10400613	10400867	AT4TE47485	.	+	VANDAL13	MuDR	DNA	254	short	38	low	7266939	chromoarm	1073	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	10401595	10401746	AT4TE47490	.	+	VANDAL13	MuDR	DNA	151	short	38	low	7267921	chromoarm	194	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	10404498	10404938	AT4TE47500	.	-	HELITRONY3	Helitron	RC	440	short	1399	high	7270824	chromoarm	250	no-CHH	no-CHH	.	.	.	.	.
Chr4	10424773	10424881	AT4TE47610	.	+	SIMPLEHAT2	HAT	DNA	108	short	73	medium	7291099	chromoarm	1364	no-CHH	no-CHH	.	.	.	.	.
Chr4	10425206	10426000	AT4TE47615	.	+	ATREP5	Helitron	RC	794	short	624	high	7291532	chromoarm	1797	no-CHH	no-CHH	.	.	.	.	.
Chr4	10427155	10427334	AT4TE47620	.	-	RathE1_cons	.	RathE1_cons	179	short	213	high	7293481	chromoarm	472	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	10475967	10476446	AT4TE47880	.	+	HELITRONY1C	Helitron	RC	479	short	120	medium	7342293	chromoarm	1325	no-CHH	no-CHH	.	.	.	.	.
Chr4	10492669	10493155	AT4TE47970	.	+	ATHATN5	HAT	DNA	486	short	42	low	7358995	chromoarm	167	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	10493155	10493309	AT4TE47975	.	-	ATREP10A	Helitron	RC	154	short	279	high	7359481	chromoarm	13	no-CHH	no-CHH	.	.	.	.	.
Chr4	10508741	10514094	AT4TE48050	.	-	ATREP10D	Helitron	RC	5353	long	1295	high	7375067	chromoarm	620	no-CHH	no-CHH	.	.	.	.	.
Chr4	10513150	10513572	AT4TE48055	.	+	ATREP10D	Helitron	RC	422	short	1295	high	7379476	chromoarm	5029	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	10514094	10514837	AT4TE48060	.	-	HELITRONY1B	Helitron	RC	743	short	414	high	7380420	chromoarm	5973	no-CHH	no-CHH	.	.	.	.	.
Chr4	10520305	10520779	AT4TE48090	.	+	HELITRON4	Helitron	RC	474	short	199	medium	7386631	chromoarm	744	no-CHH	no-CHH	.	.	.	.	.
Chr4	10520337	10520529	AT4TE48095	.	-	ATHPOGO	Pogo	DNA	192	short	25	low	7386663	chromoarm	994	no-CHH	no-CHH	.	.	.	.	.
Chr4	10525491	10526464	AT4TE48120	.	+	HELITRONY1E	Helitron	RC	973	short	447	high	7391817	chromoarm	1335	no-CHH	no-CHH	.	.	.	.	.
Chr4	10526464	10526776	AT4TE48125	.	+	ATHATN5	HAT	DNA	312	short	42	low	7392790	chromoarm	1023	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	10529365	10529503	AT4TE48135	.	+	HELITRONY3A	Helitron	RC	138	short	49	low	7395691	chromoarm	273	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	10530896	10531186	AT4TE48140	.	-	ATCOPIA54	Copia	LTR	290	short	18	low	7397222	chromoarm	317	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	10536236	10537173	AT4TE48170	.	+	VANDAL5	MuDR	DNA	937	short	85	medium	7402562	chromoarm	0	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	10537173	10537526	AT4TE48175	.	-	ATDNA2T9A	MuDR	DNA	353	short	48	low	7403499	chromoarm	28	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	10537877	10538181	AT4TE48180	.	+	VANDAL21	MuDR	DNA	305	short	64	medium	7404202	chromoarm	0	.	.	.	.	.	.	.
Chr4	10538181	10538254	AT4TE48185	.	-	ATDNA2T9C	MuDR	DNA	73	tiny	242	high	7404507	chromoarm	160	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	10538254	10539611	AT4TE48190	.	-	ATDNA2T9A	MuDR	DNA	1357	short	48	low	7404580	chromoarm	233	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	10539611	10540334	AT4TE48195	.	+	VANDAL5	MuDR	DNA	723	short	85	medium	7405937	chromoarm	1590	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	10540335	10540603	AT4TE48200	.	+	VANDAL5	MuDR	DNA	269	short	85	medium	7406660	chromoarm	2313	.	.	LowExpressed	.	.	.	.
Chr4	10540603	10541394	AT4TE48205	.	+	VANDAL4	MuDR	DNA	791	short	102	medium	7406929	chromoarm	2582	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	10541395	10541495	AT4TE48210	.	-	VANDAL4	MuDR	DNA	101	short	102	medium	7407720	chromoarm	3373	.	.	.	.	.	.	.
Chr4	10541504	10544314	AT4TE48215	.	+	VANDAL5	MuDR	DNA	2810	medium	85	medium	7407830	chromoarm	3483	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	10544327	10544607	AT4TE48220	.	+	VANDAL5	MuDR	DNA	280	short	85	medium	7410653	chromoarm	6306	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	10544612	10546506	AT4TE48225	.	-	VANDAL4	MuDR	DNA	1894	short	102	medium	7410938	chromoarm	6591	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	10546506	10553980	AT4TE48230	.	+	VANDAL5	MuDR	DNA	7474	long	85	medium	7412832	chromoarm	1001	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	10573069	10573665	AT4TE48330	.	+	ATREP15	Helitron	RC	596	short	1003	high	7439395	chromoarm	781	no-CHH	no-CHH	.	.	.	.	.
Chr4	10591466	10591598	AT4TE48430	.	-	ATHPOGON3	Pogo	DNA	132	short	118	medium	7457792	chromoarm	1659	no-CHH	no-CHH	.	.	.	.	.
Chr4	10591598	10593075	AT4TE48435	.	-	ATREP10D	Helitron	RC	1477	short	1295	high	7457924	chromoarm	1791	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	10605713	10606425	AT4TE48500	.	+	HELITRONY2	Helitron	RC	712	short	198	medium	7472039	chromoarm	112	no-CHH	no-CHH	.	.	.	.	.
Chr4	10615327	10615693	AT4TE48550	.	+	HELITRONY3	Helitron	RC	366	short	1399	high	7481653	chromoarm	11	no-CHH	no-CHH	.	.	.	.	.
Chr4	10623585	10623609	AT4TE48590	.	-	HELITRONY1E	Helitron	RC	24	tiny	447	high	7489911	chromoarm	651	no-CHH	no-CHH	.	.	.	.	.
Chr4	10623609	10623869	AT4TE48595	.	+	ATREP4	Helitron	RC	260	short	832	high	7489935	chromoarm	675	no-CHH	no-CHH	.	.	.	.	.
Chr4	10623869	10625566	AT4TE48600	.	+	ATREP3	Helitron	RC	1697	short	1439	high	7490195	chromoarm	220	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	10625566	10625615	AT4TE48605	.	-	TNAT1A	.	DNA	49	tiny	162	medium	7491892	chromoarm	171	no-CHH	no-CHH	.	.	.	.	.
Chr4	10625615	10625655	AT4TE48610	.	-	ATREP10B	Helitron	RC	40	tiny	491	high	7491941	chromoarm	131	no-CHH	no-CHH	.	.	.	.	.
Chr4	10631135	10631246	AT4TE48640	.	+	HELITRONY1D	Helitron	RC	111	short	756	high	7497461	chromoarm	995	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	10631246	10631797	AT4TE48645	.	-	ARNOLDY2	MuDR	DNA	551	short	288	high	7497572	chromoarm	1106	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	10631797	10632377	AT4TE48650	.	-	BRODYAGA1A	MuDR	DNA	580	short	586	high	7498123	chromoarm	1307	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	10632377	10632472	AT4TE48655	.	-	HELITRONY1D	Helitron	RC	95	tiny	756	high	7498703	chromoarm	1212	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	10632487	10633716	AT4TE48660	.	+	SIMPLEGUY1	Harbinger	DNA	1230	short	116	medium	7498812	chromoarm	0	.	.	LowExpressed	.	.	.	.
Chr4	10647307	10647656	AT4TE48730	.	+	ATSINE4	.	SINE	349	short	98	medium	7513633	chromoarm	237	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	10648122	10649338	AT4TE48735	.	+	VANDAL18NA	MuDR	DNA	1216	short	24	low	7514448	chromoarm	1052	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	10649338	10649401	AT4TE48740	.	+	VANDAL18NB	MuDR	DNA	63	tiny	19	low	7515664	chromoarm	2268	no-CHH	no-CHH	.	.	.	.	.
Chr4	10650451	10650484	AT4TE48745	.	-	ATMUN1	MuDR	DNA	33	tiny	107	medium	7516777	chromoarm	1477	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	10650484	10651529	AT4TE48750	.	-	ATMUN1	MuDR	DNA	1045	short	107	medium	7516810	chromoarm	432	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	10651529	10651575	AT4TE48755	.	+	ATMUN1	MuDR	DNA	46	tiny	107	medium	7517855	chromoarm	386	no-CHH	no-CHH	.	.	.	.	.
Chr4	10652417	10652460	AT4TE48760	.	-	ATREP15	Helitron	RC	43	tiny	1003	high	7518743	chromoarm	0	no-RdDM	no-CHH	.	.	.	.	.
Chr4	10652460	10653693	AT4TE48765	.	-	ATREP3	Helitron	RC	1233	short	1439	high	7518786	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	10678434	10678602	AT4TE48890	.	-	VANDAL1	MuDR	DNA	168	short	80	medium	7544760	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	10683190	10683553	AT4TE48910	.	+	TAG3N1	HAT	DNA	363	short	97	medium	7549516	chromoarm	346	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	10692036	10692656	AT4TE48960	.	+	HELITRONY3	Helitron	RC	620	short	1399	high	7558362	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	10706882	10707298	AT4TE49040	.	-	ATREP4	Helitron	RC	416	short	832	high	7573208	chromoarm	188	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	10709559	10709635	AT4TE49050	.	+	ATCOPIA82	Copia	LTR	76	tiny	7	low	7575885	chromoarm	836	no-CHH	no-CHH	.	.	.	.	.
Chr4	10714722	10715548	AT4TE49080	.	+	ATREP10B	Helitron	RC	826	short	491	high	7581048	chromoarm	87	no-CHH	no-CHH	.	.	.	.	.
Chr4	10721090	10721834	AT4TE49110	.	+	HELITRONY3	Helitron	RC	744	short	1399	high	7587416	chromoarm	3394	no-CHH	no-CHH	.	.	.	.	.
Chr4	10730931	10731017	AT4TE49160	.	-	RathE1_cons	.	RathE1_cons	86	tiny	213	high	7597257	chromoarm	0	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	10736057	10736084	AT4TE49190	.	-	HELITRONY1D	Helitron	RC	27	tiny	756	high	7602383	chromoarm	1082	no-CHH	no-CHH	.	.	.	.	.
Chr4	10736084	10738857	AT4TE49195	.	+	ATREP10D	Helitron	RC	2773	medium	1295	high	7602410	chromoarm	709	no-CHH	no-CHH	.	.	.	.	.
Chr4	10740859	10742458	AT4TE49205	.	-	HELITRONY1B	Helitron	RC	1599	short	414	high	7607185	chromoarm	557	no-CHH	no-CHH	.	.	.	.	.
Chr4	10742527	10743871	AT4TE49210	.	+	ATREP10D	Helitron	RC	1344	short	1295	high	7608853	chromoarm	1810	no-CHH	no-CHH	.	.	.	.	.
Chr4	10744242	10744284	AT4TE49215	.	-	HELITRONY1A	Helitron	RC	42	tiny	271	high	7610568	chromoarm	1397	no-CHH	no-CHH	.	.	.	.	.
Chr4	10744284	10745139	AT4TE49220	.	+	BRODYAGA2	MuDR	DNA	855	short	525	high	7610610	chromoarm	542	no-CHH	no-CHH	.	.	.	.	.
Chr4	10745139	10745211	AT4TE49225	.	-	RathE3_cons	.	RathE3_cons	72	tiny	104	medium	7611465	chromoarm	470	no-CHH	no-CHH	.	.	.	.	.
Chr4	10747907	10747963	AT4TE49235	.	-	ATHILA4D_LTR	Gypsy	LTR	56	tiny	106	medium	7614233	chromoarm	780	no-CHH	no-CHH	.	.	.	.	.
Chr4	10747963	10749188	AT4TE49240	.	-	ATHILA4A	Gypsy	LTR	1225	short	310	high	7614289	chromoarm	836	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	10754827	10755989	AT4TE49270	.	-	ATCOPIA1	Copia	LTR	1162	short	11	low	7621153	chromoarm	646	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	10755989	10756775	AT4TE49275	.	+	ATCOPIA16	Copia	LTR	786	short	12	low	7622315	chromoarm	1808	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	10756775	10756851	AT4TE49280	.	+	ATCOPIA85	Copia	LTR	76	tiny	7	low	7623101	chromoarm	2594	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	10759353	10759606	AT4TE49290	.	+	SIMPLEGUY1	Harbinger	DNA	253	short	116	medium	7625679	chromoarm	1223	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	10770587	10770712	AT4TE49350	.	-	ARNOLDY2	MuDR	DNA	125	short	288	high	7636913	chromoarm	1420	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	10770731	10771757	AT4TE49355	.	-	ARNOLDY1	MuDR	DNA	1026	short	237	high	7637057	chromoarm	375	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	10792627	10793932	AT4TE49460	.	-	BRODYAGA2	MuDR	DNA	1305	short	525	high	7658953	chromoarm	232	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	10793933	10794154	AT4TE49465	.	-	HELITRONY1E	Helitron	RC	221	short	447	high	7660259	chromoarm	10	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	10794647	10795546	AT4TE49470	.	-	ATREP9	Helitron	RC	899	short	201	high	7660973	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	10799315	10799595	AT4TE49490	.	+	DT1	Mariner	DNA	280	short	123	medium	7665641	chromoarm	279	no-RdDM	no-CHH	.	.	.	.	.
Chr4	10801971	10802296	AT4TE49500	.	-	ATREP10B	Helitron	RC	325	short	491	high	7668297	chromoarm	1245	no-CHH	no-CHH	.	.	.	.	.
Chr4	10802296	10803333	AT4TE49505	.	+	HELITRONY1B	Helitron	RC	1037	short	414	high	7668622	chromoarm	224	no-CHH	no-CHH	.	.	.	.	.
Chr4	10803333	10803399	AT4TE49510	.	-	BRODYAGA2	MuDR	DNA	66	tiny	525	high	7669659	chromoarm	158	no-CHH	no-CHH	.	.	.	.	.
Chr4	10803412	10803579	AT4TE49515	.	+	ATREP10D	Helitron	RC	167	short	1295	high	7669738	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	10805207	10805268	AT4TE49520	.	-	HELITRON2	Helitron	RC	61	tiny	194	medium	7671533	chromoarm	354	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr4	10805268	10806181	AT4TE49525	.	-	ATREP15	Helitron	RC	913	short	1003	high	7671594	chromoarm	13	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	10806181	10806211	AT4TE49530	.	+	HELITRONY1E	Helitron	RC	30	tiny	447	high	7672507	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	10807550	10807716	AT4TE49535	.	-	ATHAT1	HAT	DNA	166	short	105	medium	7673876	chromoarm	120	PolIV-and-RDR6-RdDM	RDR6-RdDM	.	.	.	.	.
Chr4	10809575	10809643	AT4TE49545	.	-	ATHPOGON3	Pogo	DNA	68	tiny	118	medium	7675901	chromoarm	333	no-CHH	no-CHH	.	.	.	.	.
Chr4	10820609	10821423	AT4TE49600	.	-	ATREP10D	Helitron	RC	814	short	1295	high	7686935	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	10822163	10822364	AT4TE49605	.	+	HELITRON4	Helitron	RC	201	short	199	medium	7688489	chromoarm	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	10826885	10826908	AT4TE49620	.	+	ATREP10D	Helitron	RC	24	tiny	1295	high	7693210	chromoarm	1244	.	.	.	.	.	.	.
Chr4	10826908	10827849	AT4TE49625	.	-	HELITRONY3	Helitron	RC	941	short	1399	high	7693234	chromoarm	303	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	10839386	10840189	AT4TE49680	.	-	ATREP15	Helitron	RC	803	short	1003	high	7705712	chromoarm	393	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	10860758	10861199	AT4TE49790	.	+	HELITRONY1D	Helitron	RC	441	short	756	high	7727084	chromoarm	348	no-CHH	no-CHH	.	.	.	.	.
Chr4	10870631	10870780	AT4TE49840	.	+	ATREP10A	Helitron	RC	150	short	279	high	7736956	chromoarm	248	.	.	.	.	.	.	.
Chr4	10870781	10871688	AT4TE49845	.	+	ATREP10	Helitron	RC	908	short	63	medium	7737106	chromoarm	45	.	.	.	.	.	.	.
Chr4	10899527	10904738	AT4TE49990	.	+	META1	Copia	LTR	5211	long	138	medium	7765853	chromoarm	733	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	10911107	10911129	AT4TE50020	.	-	ATREP15	Helitron	RC	22	tiny	1003	high	7777433	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	10911129	10912736	AT4TE50025	.	-	ATREP4	Helitron	RC	1607	short	832	high	7777455	chromoarm	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	10912736	10913380	AT4TE50030	.	-	ATREP10B	Helitron	RC	644	short	491	high	7779062	chromoarm	232	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	10914752	10915586	AT4TE50035	.	+	HELITRONY1D	Helitron	RC	834	short	756	high	7781078	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	10915172	10915252	AT4TE50040	.	+	HELITRONY1D	Helitron	RC	80	tiny	756	high	7781498	chromoarm	0	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	10915602	10915625	AT4TE50045	.	+	HELITRONY1D	Helitron	RC	23	tiny	756	high	7781928	chromoarm	0	no-CHH	no-RdDM	.	.	.	.	.
Chr4	10918643	10918836	AT4TE50055	.	+	ATCOPIA50	Copia	LTR	193	short	17	low	7784969	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	10920961	10921345	AT4TE50065	.	-	ATCOPIA49	Copia	LTR	384	short	34	low	7787287	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	10923314	10923335	AT4TE50075	.	-	SIMPLEHAT2	HAT	DNA	21	tiny	73	medium	7789640	chromoarm	906	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	10923335	10924199	AT4TE50080	.	-	SIMPLEGUY1	Harbinger	DNA	864	short	116	medium	7789661	chromoarm	42	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	10924199	10924255	AT4TE50085	.	-	SIMPLEHAT2	HAT	DNA	56	tiny	73	medium	7790525	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	10928128	10928494	AT4TE50100	.	+	ATSINE4	.	SINE	366	short	98	medium	7794454	chromoarm	651	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	10933128	10933181	AT4TE50130	.	+	BRODYAGA1A	MuDR	DNA	53	tiny	586	high	7799454	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	10933181	10933764	AT4TE50135	.	+	ATREP3	Helitron	RC	583	short	1439	high	7799507	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	10955820	10955924	AT4TE50250	.	-	ATCOPIA20	Copia	LTR	104	short	6	low	7822146	chromoarm	0	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	10959390	10961551	AT4TE50260	.	+	AT9TSD1	MuDR	DNA	2161	medium	55	medium	7825716	chromoarm	87	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	10992909	10992995	AT4TE50430	.	+	ATCOPIA47	Copia	LTR	86	tiny	4	low	7859235	chromoarm	1443	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	10992995	10998058	AT4TE50435	.	+	ATCOPIA47	Copia	LTR	5063	long	4	low	7859321	chromoarm	1529	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	10993329	10995042	+	transcript_id-"520e291a-cc5e-4a9f-b730-7710652fbc6d|171"
Chr4	10999493	10999795	AT4TE50440	.	-	ATREP10D	Helitron	RC	302	short	1295	high	7865819	chromoarm	1215	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	10999800	11000869	AT4TE50445	.	+	ATREP11	Helitron	RC	1069	short	841	high	7866126	chromoarm	141	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	11000869	11001002	AT4TE50450	.	+	ATREP7	Helitron	RC	133	short	164	medium	7867195	chromoarm	8	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	11026955	11027414	AT4TE50590	.	+	HELITRONY1D	Helitron	RC	459	short	756	high	7893281	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	11027414	11027514	AT4TE50595	.	-	VANDAL18NA	MuDR	DNA	100	short	24	low	7893740	chromoarm	0	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	11032476	11032608	AT4TE50620	.	-	VANDAL6	MuDR	DNA	132	short	89	medium	7898802	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	11035894	11035973	AT4TE50630	.	-	BRODYAGA1A	MuDR	DNA	79	tiny	586	high	7902220	chromoarm	368	no-CHH	no-CHH	.	.	.	.	.
Chr4	11035973	11036334	AT4TE50635	.	-	BRODYAGA1A	MuDR	DNA	361	short	586	high	7902299	chromoarm	447	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	11036484	11040233	AT4TE50640	.	+	ATLANTYS3	Gypsy	LTR	3749	medium	142	medium	7902810	chromoarm	958	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	11038963	11039173	AT4TE50645	.	+	ATLANTYS2	Gypsy	LTR	210	short	179	medium	7905289	chromoarm	3437	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	11040233	11041012	AT4TE50650	.	+	ATLANTYS3	Gypsy	LTR	779	short	142	medium	7906559	chromoarm	4707	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	11041012	11043569	AT4TE50655	.	-	ATLANTYS3	Gypsy	LTR	2557	medium	142	medium	7907338	chromoarm	2342	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	11042316	11042606	AT4TE50660	.	-	ATLANTYS3	Gypsy	LTR	290	short	142	medium	7908642	chromoarm	3305	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr4	11045326	11045365	AT4TE50670	.	-	ATGP9LTR	Gypsy	LTR	40	tiny	10	low	7911651	chromoarm	546	.	.	.	.	.	.	.
Chr4	11045870	11046232	AT4TE50675	.	+	ATLINE1_1	L1	LINE	362	short	61	medium	7912196	chromoarm	0	no-RdDM	no-CHH	.	.	.	.	.
Chr4	11046232	11046689	AT4TE50680	.	+	ATLANTYS3	Gypsy	LTR	457	short	142	medium	7912558	chromoarm	0	no-RdDM	no-CHH	.	.	.	.	.
Chr4	11080490	11082077	AT4TE50860	.	+	ATDNA2T9A	MuDR	DNA	1587	short	48	low	7946816	chromoarm	184	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	11082077	11082321	AT4TE50865	.	-	ATREP3	Helitron	RC	244	short	1439	high	7948403	chromoarm	482	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	11082322	11082363	AT4TE50870	.	-	HELITRONY2	Helitron	RC	42	tiny	198	medium	7948647	chromoarm	440	.	.	.	.	.	.	.
Chr4	11085410	11085622	AT4TE50880	.	-	HELITRONY2	Helitron	RC	213	short	198	medium	7951735	chromoarm	257	.	.	.	.	.	.	.
Chr4	11088669	11088881	AT4TE50890	.	-	HELITRONY2	Helitron	RC	213	short	198	medium	7954994	chromoarm	257	.	.	.	.	.	.	.
Chr4	11091929	11092141	AT4TE50900	.	-	HELITRONY2	Helitron	RC	213	short	198	medium	7958254	chromoarm	257	.	.	.	.	.	.	.
Chr4	11096738	11096905	AT4TE50920	.	-	ATCOPIA67	Copia	LTR	168	short	15	low	7963063	chromoarm	336	.	.	.	.	.	.	.
Chr4	11097270	11097308	AT4TE50925	.	+	VANDAL6	MuDR	DNA	38	tiny	89	medium	7963596	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	11097491	11097577	AT4TE50930	.	-	ATLANTYS3	Gypsy	LTR	86	tiny	142	medium	7963817	chromoarm	0	RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	11097719	11097957	AT4TE50935	.	-	TAT1_ATH	Gypsy	LTR	238	short	87	medium	7964045	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	11100313	11100525	AT4TE50945	.	-	HELITRONY2	Helitron	RC	213	short	198	medium	7966638	chromoarm	257	.	.	.	.	.	.	.
Chr4	11103513	11103734	AT4TE50955	.	+	ATLANTYS3	Gypsy	LTR	221	short	142	medium	7969839	chromoarm	1674	no-CHH	no-CHH	.	.	.	.	.
Chr4	11103734	11105019	AT4TE50960	.	+	ATLANTYS3	Gypsy	LTR	1285	short	142	medium	7970060	chromoarm	389	no-CHH	no-CHH	.	.	.	.	.
Chr4	11109692	11110245	AT4TE50990	.	+	ATLANTYS3	Gypsy	LTR	553	short	142	medium	7976018	chromoarm	1851	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	11111693	11114359	AT4TE50995	.	-	ATLINE1_1	L1	LINE	2666	medium	61	medium	7978019	chromoarm	3852	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	11114874	11114914	AT4TE51000	.	+	ATGP9LTR	Gypsy	LTR	40	tiny	10	low	7981200	chromoarm	7033	no-CHH	no-CHH	.	.	.	.	.
Chr4	11116677	11120807	AT4TE51005	.	+	ATLANTYS3	Gypsy	LTR	4130	medium	142	medium	7983003	chromoarm	5343	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	11122709	11122741	AT4TE51015	.	+	BRODYAGA1A	MuDR	DNA	32	tiny	586	high	7989035	chromoarm	3409	no-CHH	no-CHH	.	.	.	.	.
Chr4	11122741	11123827	AT4TE51020	.	-	BRODYAGA1A	MuDR	DNA	1086	short	586	high	7989067	chromoarm	2323	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	11123827	11123865	AT4TE51025	.	-	BRODYAGA1A	MuDR	DNA	38	tiny	586	high	7990153	chromoarm	2285	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	11136693	11137332	AT4TE51090	.	-	ATREP9	Helitron	RC	639	short	201	high	8003019	chromoarm	270	no-CHH	no-CHH	.	.	.	.	.
Chr4	11137332	11137389	AT4TE51095	.	+	BRODYAGA2	MuDR	DNA	57	tiny	525	high	8003658	chromoarm	909	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	11137481	11139361	AT4TE51100	.	+	VANDAL22	MuDR	DNA	1880	short	48	low	8003807	chromoarm	294	PolIV-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	11137804	11138422	+	transcript_id-"7725e526-351e-4d7f-9ac7-1bfbd1ec661d|4"
Chr4	11155498	11155576	AT4TE51190	.	+	ATDNAI27T9A	MuDR	DNA	78	tiny	116	medium	8021824	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	11176894	11177204	AT4TE51310	.	-	ATHPOGON1	Pogo	DNA	310	short	174	medium	8043220	chromoarm	1016	no-CHH	no-CHH	.	.	.	.	.
Chr4	11191186	11191271	AT4TE51390	.	-	HELITRONY1E	Helitron	RC	85	tiny	447	high	8057512	chromoarm	611	no-CHH	no-CHH	.	.	.	.	.
Chr4	11191271	11191548	AT4TE51395	.	+	ATREP5	Helitron	RC	277	short	624	high	8057597	chromoarm	696	no-CHH	no-CHH	.	.	.	.	.
Chr4	11191548	11191878	AT4TE51400	.	+	HELITRON1	Helitron	RC	330	short	130	medium	8057874	chromoarm	973	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	11191878	11193570	AT4TE51405	.	-	ATREP3	Helitron	RC	1692	short	1439	high	8058204	chromoarm	606	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	11193573	11193599	AT4TE51410	.	-	ATREP10D	Helitron	RC	26	tiny	1295	high	8059899	chromoarm	577	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	11206541	11206586	AT4TE51480	.	+	VANDAL6	MuDR	DNA	45	tiny	89	medium	8072867	chromoarm	503	no-CHH	no-RdDM	.	.	.	.	.
Chr4	11210979	11211016	AT4TE51500	.	+	VANDAL6	MuDR	DNA	37	tiny	89	medium	8077305	chromoarm	1060	no-CHH	no-CHH	.	.	.	.	.
Chr4	11211199	11211241	AT4TE51505	.	-	ATLANTYS3	Gypsy	LTR	42	tiny	142	medium	8077525	chromoarm	835	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	11211241	11211652	AT4TE51510	.	+	VANDAL6	MuDR	DNA	411	short	89	medium	8077567	chromoarm	424	no-CHH	no-CHH	.	.	.	.	.
Chr4	11211652	11211693	AT4TE51515	.	+	ATGP2	Gypsy	LTR	41	tiny	48	low	8077978	chromoarm	383	no-CHH	no-CHH	.	.	.	.	.
Chr4	11223653	11224087	AT4TE51570	.	+	ATREP6	Helitron	RC	434	short	181	medium	8089979	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	11224090	11225451	AT4TE51575	.	+	ATREP7	Helitron	RC	1361	short	164	medium	8090416	chromoarm	334	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	11225451	11225791	AT4TE51580	.	+	ATREP13	Helitron	RC	340	short	106	medium	8091777	chromoarm	525	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	11225791	11225855	AT4TE51585	.	+	ATREP15	Helitron	RC	64	tiny	1003	high	8092117	chromoarm	461	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	11229049	11229366	AT4TE51595	.	-	VANDAL17	MuDR	DNA	317	short	178	medium	8095375	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	11232150	11232199	AT4TE51605	.	+	ATREP10D	Helitron	RC	49	tiny	1295	high	8098476	chromoarm	152	no-CHH	no-CHH	.	.	.	.	.
Chr4	11232199	11233189	AT4TE51610	.	-	HELITRONY1D	Helitron	RC	990	short	756	high	8098525	chromoarm	201	no-CHH	no-CHH	.	.	.	.	.
Chr4	11233189	11233296	AT4TE51615	.	+	ATREP3	Helitron	RC	107	short	1439	high	8099515	chromoarm	1191	no-CHH	no-CHH	.	.	.	.	.
Chr4	11233607	11233803	AT4TE51620	.	-	ATREP10D	Helitron	RC	196	short	1295	high	8099933	chromoarm	1003	no-CHH	no-CHH	.	.	.	.	.
Chr4	11233803	11234719	AT4TE51625	.	+	ATREP10D	Helitron	RC	916	short	1295	high	8100129	chromoarm	87	no-CHH	no-CHH	.	.	.	.	.
Chr4	11234719	11234807	AT4TE51630	.	-	HELITRONY1E	Helitron	RC	88	tiny	447	high	8101045	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	11239318	11239450	AT4TE51650	.	+	ATLINE1_6	L1	LINE	132	short	129	medium	8105644	chromoarm	245	no-CHH	no-CHH	.	.	.	.	.
Chr4	11239541	11239901	AT4TE51655	.	-	HELITRONY1E	Helitron	RC	360	short	447	high	8105867	chromoarm	468	no-CHH	no-CHH	.	.	.	.	.
Chr4	11253510	11253533	AT4TE51720	.	+	HELITRONY1B	Helitron	RC	23	tiny	414	high	8119836	chromoarm	877	no-CHH	no-CHH	.	.	.	.	.
Chr4	11253533	11253745	AT4TE51725	.	-	HELITRONY1D	Helitron	RC	212	short	756	high	8119859	chromoarm	856	no-CHH	no-CHH	.	.	.	.	.
Chr4	11253745	11254569	AT4TE51730	.	+	HELITRONY1D	Helitron	RC	824	short	756	high	8120071	chromoarm	32	no-CHH	no-CHH	.	.	.	.	.
Chr4	11254569	11254608	AT4TE51735	.	-	HELITRONY3	Helitron	RC	39	tiny	1399	high	8120895	chromoarm	0	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	11288808	11288930	AT4TE51910	.	-	ATCOPIA20	Copia	LTR	122	short	6	low	8155134	chromoarm	295	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	11288930	11288981	AT4TE51915	.	+	VANDAL8	MuDR	DNA	51	tiny	123	medium	8155256	chromoarm	355	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	11299227	11299254	AT4TE51970	.	-	HELITRONY1D	Helitron	RC	27	tiny	756	high	8165553	chromoarm	3496	no-CHH	no-CHH	.	.	.	.	.
Chr4	11299254	11300249	AT4TE51975	.	-	ATREP19	.	DNA	995	short	189	medium	8165580	chromoarm	2501	no-CHH	no-CHH	.	.	.	.	.
Chr4	11303213	11303940	AT4TE51985	.	+	ATREP15	Helitron	RC	727	short	1003	high	8169539	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	11323965	11324030	AT4TE52090	.	+	ATLINEIII	L1	LINE	65	tiny	196	medium	8190291	chromoarm	301	no-CHH	no-CHH	.	.	.	.	.
Chr4	11358594	11362912	AT4TE52280	.	-	ATREP3	Helitron	RC	4318	medium	1439	high	8224920	chromoarm	1327	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	11359920	11360456	AT4TE52285	.	-	HELITRONY3	Helitron	RC	536	short	1399	high	8226246	chromoarm	2653	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	11360456	11360718	AT4TE52290	.	+	ATREP3	Helitron	RC	262	short	1439	high	8226782	chromoarm	3189	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	11362913	11362962	AT4TE52300	.	+	ATREP3	Helitron	RC	50	tiny	1439	high	8229238	chromoarm	5645	.	.	.	.	.	.	.
Chr4	11362962	11363018	AT4TE52305	.	+	ATREP3	Helitron	RC	56	tiny	1439	high	8229288	chromoarm	5695	no-CHH	no-CHH	.	.	.	.	.
Chr4	11363024	11363210	AT4TE52310	.	+	ATREP4	Helitron	RC	186	short	832	high	8229350	chromoarm	5757	no-CHH	no-CHH	.	.	.	.	.
Chr4	11363559	11368654	AT4TE52315	.	-	ATCOPIA10	Copia	LTR	5095	long	7	low	8229885	chromoarm	6292	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr4	11368905	11369421	AT4TE52320	.	+	ATLINE2	L1	LINE	516	short	138	medium	8235231	chromoarm	11638	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr4	11370469	11370800	AT4TE52325	.	-	ATREP11	Helitron	RC	331	short	841	high	8236795	chromoarm	12740	no-CHH	no-CHH	.	.	.	.	.
Chr4	11370800	11370918	AT4TE52330	.	+	ARNOLDY2	MuDR	DNA	118	short	288	high	8237126	chromoarm	12622	no-CHH	no-CHH	.	.	.	.	.
Chr4	11370918	11370988	AT4TE52335	.	+	ATHPOGON1	Pogo	DNA	70	tiny	174	medium	8237244	chromoarm	12552	no-CHH	no-CHH	.	.	.	.	.
Chr4	11370989	11372669	AT4TE52340	.	+	ARNOLDY1	MuDR	DNA	1681	short	237	high	8237314	chromoarm	10871	.	.	.	.	.	.	.
Chr4	11372669	11372756	AT4TE52345	.	+	ARNOLDY1	MuDR	DNA	87	tiny	237	high	8238995	chromoarm	10784	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	11372756	11372836	AT4TE52350	.	+	ARNOLDY1	MuDR	DNA	80	tiny	237	high	8239082	chromoarm	10704	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	11372836	11372917	AT4TE52355	.	+	ARNOLDY2	MuDR	DNA	81	tiny	288	high	8239162	chromoarm	10623	no-RdDM	no-CHH	.	.	.	.	.
Chr4	11374780	11374889	AT4TE52365	.	-	ATENSPM5	En-Spm	DNA	109	short	111	medium	8241106	chromoarm	8651	no-CHH	no-CHH	.	.	.	.	.
Chr4	11377319	11377627	AT4TE52375	.	+	ATLINE1A	L1	LINE	308	short	289	high	8243645	chromoarm	5913	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	11377627	11378114	AT4TE52380	.	+	TNAT1A	.	DNA	487	short	162	medium	8243953	chromoarm	5426	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	11378114	11378224	AT4TE52385	.	+	ATREP4	Helitron	RC	110	short	832	high	8244440	chromoarm	5316	no-CHH	no-CHH	.	.	.	.	.
Chr4	11378693	11379651	AT4TE52390	.	+	ATCOPIA37	Copia	LTR	958	short	32	low	8245019	chromoarm	3889	no-CHH	no-CHH	.	.	.	.	.
Chr4	11379766	11379872	AT4TE52395	.	-	ATDNA2T9C	MuDR	DNA	106	short	242	high	8246092	chromoarm	3668	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	11379872	11380587	AT4TE52400	.	+	ATREP10D	Helitron	RC	715	short	1295	high	8246198	chromoarm	2953	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	11380587	11380642	AT4TE52405	.	+	ATREP11	Helitron	RC	55	tiny	841	high	8246913	chromoarm	2898	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	11380642	11382073	AT4TE52410	.	+	ATREP11	Helitron	RC	1431	short	841	high	8246968	chromoarm	1467	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	11382081	11382407	AT4TE52415	.	+	ATREP10A	Helitron	RC	326	short	279	high	8248407	chromoarm	1133	no-CHH	no-CHH	ExpressedAndAnnotated	11382146,11382147	11383347,11383238	+,+	transcript_id-"af8b18e9-0480-45f2-885c-2f5c732826b8|3",transcript_id-"a478e126-49df-4b76-827b-ce004d876291|3"
Chr4	11382407	11383048	AT4TE52420	.	+	HELITRONY2	Helitron	RC	641	short	198	medium	8248733	chromoarm	492	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	11405811	11407512	AT4TE52540	.	+	Unassigned	.	Unassigned	1701	short	.	low	8272137	chromoarm	322	no-CHH	no-CHH	ExpressedAndAnnotated	11406854	11407625	+	transcript_id-"fcac6cae-06eb-47ef-a21c-abaedd6d0951|5"
Chr4	11424140	11424553	AT4TE52630	.	+	BRODYAGA2	MuDR	DNA	413	short	525	high	8290466	chromoarm	227	no-CHH	no-CHH	.	.	.	.	.
Chr4	11424553	11424577	AT4TE52635	.	+	BRODYAGA1A	MuDR	DNA	24	tiny	586	high	8290879	chromoarm	203	no-CHH	no-CHH	.	.	.	.	.
Chr4	11435480	11435603	AT4TE52690	.	-	ATTIRTA1	Tc1	DNA	123	short	95	medium	8301806	chromoarm	196	no-CHH	no-CHH	.	.	.	.	.
Chr4	11440524	11441005	AT4TE52720	.	-	ATREP15	Helitron	RC	481	short	1003	high	8306850	chromoarm	59	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	11441005	11441211	AT4TE52725	.	+	ATENSPM6	En-Spm	DNA	206	short	151	medium	8307331	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	11441793	11441870	AT4TE52730	.	-	ATREP15	Helitron	RC	77	tiny	1003	high	8308119	chromoarm	81	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	11441870	11442269	AT4TE52735	.	-	ATTIRX1A	.	DNA	399	short	63	medium	8308196	chromoarm	158	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	11499535	11499640	AT4TE53040	.	-	HARBINGER	Harbinger	DNA	105	short	90	medium	8365861	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	11525186	11525451	AT4TE53180	.	+	DT1	Mariner	DNA	265	short	123	medium	8391512	chromoarm	1777	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	11529356	11529862	AT4TE53200	.	+	ATREP10B	Helitron	RC	506	short	491	high	8395682	chromoarm	93	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	11551508	11552219	AT4TE53320	.	+	ATREP11	Helitron	RC	711	short	841	high	8417834	chromoarm	1093	no-CHH	no-CHH	.	.	.	.	.
Chr4	11583865	11584073	AT4TE53490	.	-	HARBINGER	Harbinger	DNA	208	short	90	medium	8450191	chromoarm	0	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	11592608	11594786	AT4TE53540	.	+	ATREP10D	Helitron	RC	2178	medium	1295	high	8458934	chromoarm	470	no-CHH	no-CHH	.	.	.	.	.
Chr4	11595166	11595410	AT4TE53545	.	-	ATTIRTA1	Tc1	DNA	244	short	95	medium	8461492	chromoarm	3028	no-CHH	no-CHH	.	.	.	.	.
Chr4	11596833	11597806	AT4TE53550	.	-	ATREP4	Helitron	RC	973	short	832	high	8463159	chromoarm	2431	no-CHH	no-CHH	.	.	.	.	.
Chr4	11615095	11615152	AT4TE53640	.	+	HELITRONY1A	Helitron	RC	57	tiny	271	high	8481421	chromoarm	853	no-CHH	no-CHH	.	.	.	.	.
Chr4	11615152	11616000	AT4TE53645	.	-	HELITRONY1E	Helitron	RC	848	short	447	high	8481478	chromoarm	566	no-CHH	no-CHH	.	.	.	.	.
Chr4	11616000	11616072	AT4TE53650	.	-	ATREP15	Helitron	RC	72	tiny	1003	high	8482326	chromoarm	494	no-CHH	no-CHH	.	.	.	.	.
Chr4	11616072	11616136	AT4TE53655	.	+	HELITRONY3	Helitron	RC	64	tiny	1399	high	8482398	chromoarm	430	no-CHH	no-CHH	.	.	.	.	.
Chr4	11631289	11631613	AT4TE53730	.	+	ATREP10D	Helitron	RC	324	short	1295	high	8497615	chromoarm	2036	no-CHH	no-CHH	.	.	.	.	.
Chr4	11634477	11635150	AT4TE53740	.	-	ATREP5	Helitron	RC	673	short	624	high	8500803	chromoarm	933	no-CHH	no-CHH	.	.	.	.	.
Chr4	11635165	11635683	AT4TE53745	.	+	ATREP3	Helitron	RC	518	short	1439	high	8501491	chromoarm	400	no-CHH	no-CHH	.	.	.	.	.
Chr4	11655276	11655403	AT4TE53850	.	+	ATLINE1A	L1	LINE	127	short	289	high	8521602	chromoarm	464	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	11660887	11661339	AT4TE53880	.	-	VANDAL17	MuDR	DNA	452	short	178	medium	8527213	chromoarm	685	no-CHH	no-CHH	.	.	.	.	.
Chr4	11673646	11673824	AT4TE53950	.	-	ATREP10B	Helitron	RC	178	short	491	high	8539972	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	11673824	11674204	AT4TE53955	.	+	BRODYAGA1A	MuDR	DNA	380	short	586	high	8540150	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	11676467	11681340	AT4TE53965	.	-	ATCOPIA22	Copia	LTR	4873	medium	14	low	8542793	chromoarm	892	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr4	11683750	11683852	AT4TE53975	.	+	ATCOPIA3	Copia	LTR	102	short	8	low	8550076	chromoarm	12	no-CHH	no-CHH	.	.	.	.	.
Chr4	11686455	11686481	AT4TE53985	.	+	ATREP10D	Helitron	RC	26	tiny	1295	high	8552781	chromoarm	949	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr4	11686481	11686531	AT4TE53990	.	-	ATREP9	Helitron	RC	50	tiny	201	high	8552807	chromoarm	975	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr4	11686531	11687098	AT4TE53995	.	-	ATTIR16T3A	.	DNA	567	short	106	medium	8552857	chromoarm	521	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	11687098	11687446	AT4TE54000	.	-	HELITRONY3	Helitron	RC	348	short	1399	high	8553424	chromoarm	173	no-CHH	no-CHH	.	.	.	.	.
Chr4	11687446	11687516	AT4TE54005	.	-	ATREP7	Helitron	RC	70	tiny	164	medium	8553772	chromoarm	103	no-CHH	no-CHH	.	.	.	.	.
Chr4	11688632	11689161	AT4TE54010	.	-	HELITRONY1D	Helitron	RC	529	short	756	high	8554958	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	11689173	11689200	AT4TE54015	.	+	ATCOPIA45	Copia	LTR	27	tiny	20	low	8555499	chromoarm	354	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	11689200	11689867	AT4TE54020	.	+	ATCOPIA45	Copia	LTR	667	short	20	low	8555526	chromoarm	381	no-CHH	no-CHH	.	.	.	.	.
Chr4	11696292	11696725	AT4TE54050	.	-	ATREP13	Helitron	RC	433	short	106	medium	8562618	chromoarm	2058	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	11696725	11696855	AT4TE54055	.	-	ATREP13	Helitron	RC	130	short	106	medium	8563051	chromoarm	2491	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	11699062	11699534	AT4TE54065	.	+	HELITRONY1D	Helitron	RC	472	short	756	high	8565388	chromoarm	1199	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr4	11735745	11735857	AT4TE54260	.	+	ATCOPIA30	Copia	LTR	112	short	33	low	8602071	chromoarm	326	no-CHH	no-CHH	.	.	.	.	.
Chr4	11751244	11752221	AT4TE54340	.	-	ATREP10D	Helitron	RC	977	short	1295	high	8617570	chromoarm	246	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	11752221	11752324	AT4TE54345	.	+	ATREP14	Helitron	RC	103	short	47	low	8618547	chromoarm	143	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	11752324	11752399	AT4TE54350	.	+	ATREP1	Helitron	RC	75	tiny	498	high	8618650	chromoarm	68	no-CHH	no-CHH	.	.	.	.	.
Chr4	11752399	11752454	AT4TE54355	.	+	ATREP1	Helitron	RC	55	tiny	498	high	8618725	chromoarm	13	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	11753359	11753447	AT4TE54360	.	+	TAG3N1	HAT	DNA	88	tiny	97	medium	8619685	chromoarm	543	no-CHH	no-CHH	.	.	.	.	.
Chr4	11756666	11757315	AT4TE54370	.	-	SIMPLEHAT1	HAT	DNA	649	short	56	medium	8622992	chromoarm	651	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	11762101	11762169	AT4TE54400	.	+	ATTIRX1A	.	DNA	68	tiny	63	medium	8628427	chromoarm	122	no-CHH	no-CHH	.	.	.	.	.
Chr4	11768549	11769229	AT4TE54430	.	+	HELITRONY1D	Helitron	RC	680	short	756	high	8634875	chromoarm	220	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	11777829	11777888	AT4TE54480	.	-	TAG2	HAT	DNA	59	tiny	86	medium	8644155	chromoarm	312	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	11782350	11782417	AT4TE54500	.	-	TAG2	HAT	DNA	67	tiny	86	medium	8648676	chromoarm	452	no-RdDM	no-CHH	.	.	.	.	.
Chr4	11796235	11796817	AT4TE54570	.	-	ATHATN3A	HAT	DNA	582	short	20	low	8662561	chromoarm	1639	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	11820546	11823366	AT4TE54700	.	-	ATGP3	Gypsy	LTR	2820	medium	60	medium	8686872	chromoarm	411	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	11823366	11823389	AT4TE54705	.	-	ATGP3	Gypsy	LTR	23	tiny	60	medium	8689692	chromoarm	2224	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	11825590	11825698	AT4TE54715	.	+	ATMU2	MuDR	DNA	108	short	64	medium	8691916	chromoarm	0	no-RdDM	no-CHH	.	.	.	.	.
Chr4	11826973	11827026	AT4TE54720	.	-	ATCOPIA42	Copia	LTR	53	tiny	35	low	8693299	chromoarm	541	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	11829914	11830746	AT4TE54730	.	-	HELITRONY1B	Helitron	RC	832	short	414	high	8696240	chromoarm	277	no-CHH	no-CHH	.	.	.	.	.
Chr4	11830746	11830786	AT4TE54735	.	-	ATREP3	Helitron	RC	40	tiny	1439	high	8697072	chromoarm	237	no-CHH	no-CHH	.	.	.	.	.
Chr4	11833062	11833186	AT4TE54745	.	-	ATLINE1_5	L1	LINE	124	short	91	medium	8699388	chromoarm	794	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	11834128	11838651	AT4TE54750	.	+	HARBINGER	Harbinger	DNA	4523	medium	90	medium	8700454	chromoarm	508	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	11834412,11834412,11834412	11836846,11836849,11838503	+,+,+	transcript_id-"dfb39115-f0c4-4eaf-a0f1-16704eaff0a1|17",transcript_id-"244eae2d-109c-4522-8150-7291fd9f2b78|11",transcript_id-"0a00ab5d-2011-47cd-92a3-58a99d9254c7|5"
Chr4	11847596	11848301	AT4TE54800	.	+	ATLINEIII	L1	LINE	705	short	196	medium	8713922	chromoarm	1120	no-CHH	no-CHH	.	.	.	.	.
Chr4	11852106	11852590	AT4TE54820	.	+	ATMU9	MuDR	DNA	484	short	16	low	8718432	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	11866557	11867057	AT4TE54900	.	-	ATREP3	Helitron	RC	500	short	1439	high	8732883	chromoarm	449	no-CHH	no-CHH	.	.	.	.	.
Chr4	11867057	11867467	AT4TE54905	.	+	ATREP5	Helitron	RC	410	short	624	high	8733383	chromoarm	949	no-CHH	no-CHH	.	.	.	.	.
Chr4	11867467	11867765	AT4TE54910	.	+	ATREP10D	Helitron	RC	298	short	1295	high	8733793	chromoarm	1359	no-CHH	no-CHH	.	.	.	.	.
Chr4	11869849	11872205	AT4TE54920	.	-	HELITRONY3	Helitron	RC	2356	medium	1399	high	8736175	chromoarm	3741	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	11872205	11872856	AT4TE54925	.	-	ATREP4	Helitron	RC	651	short	832	high	8738531	chromoarm	5398	no-CHH	no-CHH	.	.	.	.	.
Chr4	11872856	11872972	AT4TE54930	.	-	ATREP10D	Helitron	RC	116	short	1295	high	8739182	chromoarm	5282	no-CHH	no-CHH	.	.	.	.	.
Chr4	11872972	11874325	AT4TE54935	.	+	ATREP10D	Helitron	RC	1353	short	1295	high	8739298	chromoarm	3929	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	11874741	11875672	AT4TE54940	.	+	HELITRONY3	Helitron	RC	931	short	1399	high	8741067	chromoarm	2582	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	11885518	11886152	AT4TE54990	.	-	ATDNA2T9C	MuDR	DNA	634	short	242	high	8751844	chromoarm	268	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	11887631	11887891	AT4TE54995	.	-	ATDNA2T9C	MuDR	DNA	260	short	242	high	8753957	chromoarm	1490	no-CHH	no-CHH	.	.	.	.	.
Chr4	11901478	11901833	AT4TE55060	.	-	ATCOPIA26	Copia	LTR	355	short	19	low	8767804	chromoarm	331	no-CHH	no-CHH	.	.	.	.	.
Chr4	11918873	11919021	AT4TE55150	.	+	ATCOPIA23	Copia	LTR	148	short	8	low	8785199	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	11921818	11922050	AT4TE55160	.	+	VANDAL3	MuDR	DNA	232	short	177	medium	8788144	chromoarm	738	no-CHH	no-CHH	.	.	.	.	.
Chr4	11922050	11922374	AT4TE55165	.	-	ATREP1	Helitron	RC	324	short	498	high	8788376	chromoarm	414	no-CHH	no-CHH	.	.	.	.	.
Chr4	11929301	11929672	AT4TE55200	.	-	ATREP19	.	DNA	371	short	189	medium	8795627	chromoarm	174	no-CHH	no-CHH	.	.	.	.	.
Chr4	11931580	11931995	AT4TE55210	.	-	ATREP11	Helitron	RC	415	short	841	high	8797906	chromoarm	60	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	11931995	11932601	AT4TE55215	.	-	ATTIR16T3A	.	DNA	606	short	106	medium	8798321	chromoarm	475	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	11932601	11933269	AT4TE55220	.	-	ATREP4	Helitron	RC	668	short	832	high	8798927	chromoarm	31	no-CHH	no-CHH	.	.	.	.	.
Chr4	11954761	11954817	AT4TE55340	.	-	ATLINEIII	L1	LINE	56	tiny	196	medium	8821087	chromoarm	306	no-CHH	no-CHH	.	.	.	.	.
Chr4	11963493	11963755	AT4TE55390	.	-	RP1_AT	.	DNA	262	short	87	medium	8829819	chromoarm	123	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	11970962	11971063	AT4TE55430	.	+	ATENSPM6	En-Spm	DNA	101	short	151	medium	8837288	chromoarm	6	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	11974943	11974994	AT4TE55450	.	+	ATLINEIII	L1	LINE	51	tiny	196	medium	8841269	chromoarm	158	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	11978303	11979820	AT4TE55460	.	-	ATREP10B	Helitron	RC	1517	short	491	high	8844629	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	11978721	11979602	AT4TE55465	.	-	ATREP10	Helitron	RC	881	short	63	medium	8845047	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	12003205	12003268	AT4TE55590	.	+	BRODYAGA1	MuDR	DNA	63	tiny	251	high	8869531	chromoarm	404	no-CHH	no-CHH	.	.	.	.	.
Chr4	12003268	12004438	AT4TE55595	.	-	ATREP10D	Helitron	RC	1170	short	1295	high	8869594	chromoarm	466	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	12011230	12012341	AT4TE55630	.	-	ATREP10D	Helitron	RC	1111	short	1295	high	8877556	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	12022553	12022971	AT4TE55690	.	+	ATMU6N1	MuDR	DNA	418	short	39	low	8888879	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	12027887	12028450	AT4TE55720	.	-	HELITRON4	Helitron	RC	563	short	199	medium	8894213	chromoarm	466	no-CHH	no-CHH	.	.	.	.	.
Chr4	12070841	12071985	AT4TE55950	.	-	ATREP10D	Helitron	RC	1144	short	1295	high	8937167	chromoarm	871	no-CHH	no-CHH	.	.	.	.	.
Chr4	12072402	12072567	AT4TE55955	.	-	ATHAT3	HAT	DNA	165	short	23	low	8938728	chromoarm	289	no-CHH	no-CHH	.	.	.	.	.
Chr4	12092975	12093440	AT4TE56060	.	+	BRODYAGA1	MuDR	DNA	465	short	251	high	8959301	chromoarm	898	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	12094421	12095377	AT4TE56065	.	+	ATREP19	.	DNA	956	short	189	medium	8960747	chromoarm	1408	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	12094584	12094937	AT4TE56070	.	-	HELITRONY1B	Helitron	RC	353	short	414	high	8960910	chromoarm	1848	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	12095714	12096347	AT4TE56075	.	-	ATREP3	Helitron	RC	633	short	1439	high	8962040	chromoarm	438	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	12096347	12097424	AT4TE56080	.	-	ATREP15	Helitron	RC	1077	short	1003	high	8962673	chromoarm	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	12097424	12097473	AT4TE56085	.	+	ATREP10D	Helitron	RC	49	tiny	1295	high	8963750	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	12109717	12109841	AT4TE56150	.	+	HELITRONY3	Helitron	RC	124	short	1399	high	8976043	chromoarm	983	no-CHH	no-CHH	.	.	.	.	.
Chr4	12109841	12109917	AT4TE56155	.	-	HELITRON2	Helitron	RC	76	tiny	194	medium	8976167	chromoarm	1026	no-CHH	RDR6-RdDM	.	.	.	.	.
Chr4	12109918	12110674	AT4TE56160	.	-	BRODYAGA2	MuDR	DNA	757	short	525	high	8976243	chromoarm	269	.	.	.	.	.	.	.
Chr4	12110675	12110817	AT4TE56165	.	+	ATREP4	Helitron	RC	143	short	832	high	8977000	chromoarm	126	.	.	.	.	.	.	.
Chr4	12110817	12110878	AT4TE56170	.	+	HELITRONY1E	Helitron	RC	61	tiny	447	high	8977143	chromoarm	65	no-CHH	no-CHH	.	.	.	.	.
Chr4	12115529	12115713	AT4TE56200	.	+	ATMU1	MuDR	DNA	185	short	59	medium	8981854	chromoarm	5	.	.	.	.	.	.	.
Chr4	12129313	12131466	AT4TE56270	.	+	ATCOPIA11	Copia	LTR	2153	medium	26	low	8995639	chromoarm	0	no-CHH	no-CHH	ExpressedAndAnnotated	12129260,12129460	12129480,12131461	+,+	transcript_id-"3ca95608-786c-4f39-b9d4-d600daf02f06|4",transcript_id-"3348bcd6-81c8-4d71-8531-f4be04ebe79e|5"
Chr4	12131466	12131525	AT4TE56275	.	+	ATCOPIA89	Copia	LTR	59	tiny	12	low	8997792	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	12137669	12138037	AT4TE56300	.	+	HELITRONY3	Helitron	RC	368	short	1399	high	9003995	chromoarm	133	no-CHH	no-CHH	.	.	.	.	.
Chr4	12152768	12152859	AT4TE56380	.	-	ATDNA12T3A	.	DNA	91	tiny	22	low	9019094	chromoarm	1231	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	12220347	12220701	AT4TE56740	.	+	ATREP10	Helitron	RC	354	short	63	medium	9086673	chromoarm	90	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	12254846	12255417	AT4TE56920	.	+	ATREP15	Helitron	RC	571	short	1003	high	9121172	chromoarm	873	no-CHH	no-CHH	.	.	.	.	.
Chr4	12261931	12263275	AT4TE56960	.	-	ATREP10D	Helitron	RC	1344	short	1295	high	9128257	chromoarm	1364	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	12263275	12263312	AT4TE56965	.	+	ATREP4	Helitron	RC	37	tiny	832	high	9129601	chromoarm	1327	no-CHH	no-CHH	.	.	.	.	.
Chr4	12263312	12263456	AT4TE56970	.	+	ATREP4	Helitron	RC	144	short	832	high	9129638	chromoarm	1183	no-CHH	no-CHH	.	.	.	.	.
Chr4	12269419	12269612	AT4TE57000	.	+	ATCOPIA21	Copia	LTR	193	short	14	low	9135745	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	12271426	12271602	AT4TE57005	.	+	TAG2	HAT	DNA	176	short	86	medium	9137752	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	12275265	12275650	AT4TE57015	.	+	BRODYAGA1A	MuDR	DNA	385	short	586	high	9141591	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	12302971	12303167	AT4TE57160	.	+	RathE3_cons	.	RathE3_cons	196	short	104	medium	9169297	chromoarm	478	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	12334915	12335947	AT4TE57330	.	-	ATREP3	Helitron	RC	1032	short	1439	high	9201241	chromoarm	468	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	12335947	12336007	AT4TE57335	.	+	BRODYAGA1A	MuDR	DNA	60	tiny	586	high	9202273	chromoarm	408	no-CHH	no-CHH	.	.	.	.	.
Chr4	12338273	12338451	AT4TE57345	.	-	ATCOPIA50	Copia	LTR	178	short	17	low	9204599	chromoarm	700	no-CHH	no-CHH	.	.	.	.	.
Chr4	12347548	12348271	AT4TE57390	.	+	HELITRONY3	Helitron	RC	723	short	1399	high	9213874	chromoarm	1932	no-CHH	no-CHH	.	.	.	.	.
Chr4	12356028	12356691	AT4TE57430	.	-	ATREP3	Helitron	RC	663	short	1439	high	9222354	chromoarm	2015	no-CHH	no-CHH	.	.	.	.	.
Chr4	12364950	12365009	AT4TE57470	.	-	ATREP3	Helitron	RC	59	tiny	1439	high	9231276	chromoarm	158	no-CHH	no-CHH	.	.	.	.	.
Chr4	12365009	12365611	AT4TE57475	.	-	ATREP2	Helitron	RC	602	short	164	medium	9231335	chromoarm	217	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	12365611	12365927	AT4TE57480	.	-	META1	Copia	LTR	316	short	138	medium	9231937	chromoarm	819	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	12384762	12385262	AT4TE57580	.	+	BRODYAGA1A	MuDR	DNA	500	short	586	high	9251088	chromoarm	712	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	12394230	12394963	AT4TE57630	.	-	VANDAL8	MuDR	DNA	733	short	123	medium	9260556	chromoarm	491	no-CHH	no-CHH	.	.	.	.	.
Chr4	12435114	12435487	AT4TE57850	.	+	ATHATN7	HAT	DNA	373	short	71	medium	9301440	chromoarm	643	PolIV-and-RDR6-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	12435487	12435600	AT4TE57855	.	-	ATHATN4	HAT	DNA	113	short	56	medium	9301813	chromoarm	530	DCL3-RdDM	no-RdDM	.	.	.	.	.
Chr4	12435601	12435846	AT4TE57860	.	+	ATHAT7	HAT	DNA	246	short	20	low	9301926	chromoarm	284	.	.	.	.	.	.	.
Chr4	12462735	12462996	AT4TE58010	.	+	DT1	Mariner	DNA	261	short	123	medium	9329061	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	12478515	12479161	AT4TE58090	.	-	ATREP5	Helitron	RC	646	short	624	high	9344841	chromoarm	742	no-CHH	no-CHH	.	.	.	.	.
Chr4	12484046	12484296	AT4TE58120	.	-	ATREP10A	Helitron	RC	250	short	279	high	9350372	chromoarm	224	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	12486074	12486195	AT4TE58125	.	+	ATREP8	Helitron	RC	121	short	75	medium	9352400	chromoarm	51	no-CHH	no-CHH	.	.	.	.	.
Chr4	12487114	12487270	AT4TE58130	.	+	ATLINEIII	L1	LINE	156	short	196	medium	9353440	chromoarm	463	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	12487270	12487295	AT4TE58135	.	+	ATLINEIII	L1	LINE	25	tiny	196	medium	9353596	chromoarm	619	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	12561166	12561462	AT4TE58530	.	-	ATREP10D	Helitron	RC	296	short	1295	high	9427492	chromoarm	606	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	12561462	12561805	AT4TE58535	.	+	ATTIRX1C	.	DNA	343	short	39	low	9427788	chromoarm	263	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	12573757	12573985	AT4TE58590	.	-	ATREP3	Helitron	RC	228	short	1439	high	9440083	chromoarm	311	no-CHH	no-CHH	.	.	.	.	.
Chr4	12573985	12574840	AT4TE58595	.	+	ATREP1	Helitron	RC	855	short	498	high	9440311	chromoarm	167	no-CHH	no-CHH	.	.	.	.	.
Chr4	12587680	12587723	AT4TE58660	.	-	DT1	Mariner	DNA	43	tiny	123	medium	9454006	chromoarm	387	no-CHH	no-CHH	.	.	.	.	.
Chr4	12587723	12588119	AT4TE58665	.	-	HELITRONY1D	Helitron	RC	396	short	756	high	9454049	chromoarm	430	no-CHH	no-CHH	.	.	.	.	.
Chr4	12598033	12598062	AT4TE58710	.	-	ATREP15	Helitron	RC	29	tiny	1003	high	9464359	chromoarm	218	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	12598062	12598920	AT4TE58715	.	-	ATREP1	Helitron	RC	858	short	498	high	9464388	chromoarm	59	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	12606347	12606478	AT4TE58750	.	+	VANDAL8	MuDR	DNA	131	short	123	medium	9472673	chromoarm	118	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	12606478	12607053	AT4TE58755	.	-	ATREP2	Helitron	RC	575	short	164	medium	9472804	chromoarm	249	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	12607053	12607310	AT4TE58760	.	+	VANDAL8	MuDR	DNA	257	short	123	medium	9473379	chromoarm	164	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	12685027	12685457	AT4TE59180	.	+	HELITRONY1B	Helitron	RC	430	short	414	high	9551353	chromoarm	499	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	12698189	12698364	AT4TE59250	.	+	HELITRONY3	Helitron	RC	175	short	1399	high	9564515	chromoarm	153	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	12698364	12699438	AT4TE59255	.	+	ATREP1	Helitron	RC	1074	short	498	high	9564690	chromoarm	328	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	12699438	12699925	AT4TE59260	.	+	ATREP3	Helitron	RC	487	short	1439	high	9565764	chromoarm	60	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	12713686	12713791	AT4TE59330	.	-	ATREP1	Helitron	RC	105	short	498	high	9580012	chromoarm	1076	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	12719919	12720387	AT4TE59360	.	+	ATREP19	.	DNA	468	short	189	medium	9586245	chromoarm	78	no-CHH	no-CHH	.	.	.	.	.
Chr4	12720387	12720439	AT4TE59365	.	-	BRODYAGA1A	MuDR	DNA	52	tiny	586	high	9586713	chromoarm	26	no-CHH	no-CHH	.	.	.	.	.
Chr4	12739886	12739925	AT4TE59470	.	-	BRODYAGA1A	MuDR	DNA	39	tiny	586	high	9606212	chromoarm	149	no-CHH	no-CHH	.	.	.	.	.
Chr4	12739925	12739983	AT4TE59475	.	-	ATREP7	Helitron	RC	58	tiny	164	medium	9606251	chromoarm	188	no-CHH	no-CHH	.	.	.	.	.
Chr4	12739983	12740100	AT4TE59480	.	-	ATREP7	Helitron	RC	117	short	164	medium	9606309	chromoarm	246	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	12740100	12740848	AT4TE59485	.	-	ATREP7	Helitron	RC	748	short	164	medium	9606426	chromoarm	342	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	12740848	12741005	AT4TE59490	.	-	ATREP3	Helitron	RC	157	short	1439	high	9607174	chromoarm	185	no-CHH	no-CHH	.	.	.	.	.
Chr4	12751562	12751592	AT4TE59550	.	+	ATCOPIA8A	Copia	LTR	30	tiny	12	low	9617888	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	12751592	12752065	AT4TE59555	.	+	ATCOPIA7	Copia	LTR	473	short	5	low	9617918	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	12767504	12767696	AT4TE59630	.	+	VANDAL21	MuDR	DNA	192	short	64	medium	9633830	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	12768859	12768880	AT4TE59635	.	+	ATTIR16T3A	.	DNA	21	tiny	106	medium	9635185	chromoarm	907	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	12768880	12769284	AT4TE59640	.	+	ATTIRX1C	.	DNA	404	short	39	low	9635206	chromoarm	928	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	12820984	12821320	AT4TE59920	.	-	ATTIRX1B	.	DNA	336	short	44	low	9687310	chromoarm	175	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	12840203	12840861	AT4TE60020	.	-	ATREP3	Helitron	RC	658	short	1439	high	9706529	chromoarm	108	no-CHH	no-CHH	.	.	.	.	.
Chr4	12844171	12844291	AT4TE60030	.	+	ATREP10D	Helitron	RC	120	short	1295	high	9710497	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	12844292	12845068	AT4TE60035	.	-	ATREP10D	Helitron	RC	777	short	1295	high	9710617	chromoarm	82	.	.	.	.	.	.	.
Chr4	12845068	12845094	AT4TE60040	.	-	ATREP10D	Helitron	RC	26	tiny	1295	high	9711394	chromoarm	859	no-CHH	no-CHH	.	.	.	.	.
Chr4	12848613	12848773	AT4TE60050	.	-	ATLINE1_3A	L1	LINE	160	short	160	medium	9714939	chromoarm	237	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	12862325	12862570	AT4TE60120	.	+	ATREP17	MuDR	DNA	245	short	34	low	9728651	chromoarm	393	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	12867580	12868000	AT4TE60150	.	+	HELITRONY1D	Helitron	RC	420	short	756	high	9733906	chromoarm	319	no-CHH	no-CHH	.	.	.	.	.
Chr4	12892353	12892759	AT4TE60280	.	+	ATTIRX1C	.	DNA	406	short	39	low	9758679	chromoarm	0	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	12947544	12947671	AT4TE60580	.	+	ARNOLDY1	MuDR	DNA	127	short	237	high	9813870	chromoarm	902	no-CHH	no-CHH	.	.	.	.	.
Chr4	12947684	12948909	AT4TE60585	.	-	ATREP10B	Helitron	RC	1225	short	491	high	9814010	chromoarm	843	no-CHH	no-CHH	.	.	.	.	.
Chr4	12948909	12949516	AT4TE60590	.	+	ATHPOGON1	Pogo	DNA	607	short	174	medium	9815235	chromoarm	236	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	12949516	12949724	AT4TE60595	.	+	HELITRONY3	Helitron	RC	208	short	1399	high	9815842	chromoarm	28	no-CHH	no-CHH	.	.	.	.	.
Chr4	12949724	12949746	AT4TE60600	.	-	ATREP1	Helitron	RC	22	tiny	498	high	9816050	chromoarm	6	no-CHH	no-CHH	.	.	.	.	.
Chr4	12952883	12952965	AT4TE60610	.	-	ATHILA6A	Gypsy	LTR	82	tiny	247	high	9819209	chromoarm	49	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	12956831	12957720	AT4TE60630	.	-	ATREP3	Helitron	RC	889	short	1439	high	9823157	chromoarm	113	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	12967437	12967566	AT4TE60680	.	-	ATREP1	Helitron	RC	129	short	498	high	9833763	chromoarm	989	no-CHH	no-CHH	.	.	.	.	.
Chr4	12967566	12968349	AT4TE60685	.	-	ATREP2A	Helitron	RC	783	short	116	medium	9833892	chromoarm	1118	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	12968349	12968437	AT4TE60690	.	-	ATREP2A	Helitron	RC	88	tiny	116	medium	9834675	chromoarm	1749	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	12968443	12968464	AT4TE60695	.	-	ATREP14	Helitron	RC	21	tiny	47	low	9834769	chromoarm	1722	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	12968464	12968872	AT4TE60700	.	-	ATREP11	Helitron	RC	408	short	841	high	9834790	chromoarm	1314	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	12992937	12993516	AT4TE60830	.	-	HELITRONY3	Helitron	RC	579	short	1399	high	9859263	chromoarm	528	no-CHH	no-CHH	.	.	.	.	.
Chr4	12993516	12993571	AT4TE60835	.	-	ATREP10D	Helitron	RC	55	tiny	1295	high	9859842	chromoarm	1107	no-CHH	no-CHH	.	.	.	.	.
Chr4	12997394	12997553	AT4TE60850	.	-	ATTIRX1D	.	DNA	159	short	28	low	9863720	chromoarm	1017	no-CHH	no-CHH	.	.	.	.	.
Chr4	13006254	13006308	AT4TE60900	.	-	ATLINEIII	L1	LINE	54	tiny	196	medium	9872580	chromoarm	483	no-CHH	no-RdDM	.	.	.	.	.
Chr4	13019879	13019982	AT4TE60970	.	+	DT1	Mariner	DNA	103	short	123	medium	9886205	chromoarm	876	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr4	13074534	13074724	AT4TE61260	.	-	VANDAL1	MuDR	DNA	190	short	80	medium	9940860	chromoarm	0	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	13097464	13097594	AT4TE61380	.	-	ATIS112A	Harbinger	DNA	130	short	173	medium	9963790	chromoarm	45	no-CHH	no-CHH	.	.	.	.	.
Chr4	13115537	13115948	AT4TE61480	.	+	HELITRONY1D	Helitron	RC	411	short	756	high	9981863	chromoarm	200	no-CHH	no-CHH	.	.	.	.	.
Chr4	13123519	13124757	AT4TE61520	.	-	ATREP1	Helitron	RC	1238	short	498	high	9989845	chromoarm	229	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	13123702	13124424	AT4TE61525	.	-	ATREP2A	Helitron	RC	722	short	116	medium	9990028	chromoarm	412	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	13124424	13124453	AT4TE61530	.	-	ATREP2A	Helitron	RC	29	tiny	116	medium	9990750	chromoarm	770	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	13155060	13155180	AT4TE61700	.	-	ATDNAI27T9C	MuDR	DNA	120	short	108	medium	10021386	chromoarm	337	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	13176689	13177079	AT4TE61820	.	-	HELITRONY1B	Helitron	RC	390	short	414	high	10043015	chromoarm	358	no-CHH	no-CHH	.	.	.	.	.
Chr4	13204186	13204500	AT4TE61970	.	+	ATREP10B	Helitron	RC	314	short	491	high	10070512	chromoarm	158	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	13204500	13205407	AT4TE61975	.	+	ATREP15	Helitron	RC	907	short	1003	high	10070826	chromoarm	129	no-CHH	no-CHH	.	.	.	.	.
Chr4	13205407	13205429	AT4TE61980	.	-	ATREP10A	Helitron	RC	22	tiny	279	high	10071733	chromoarm	107	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	13205429	13205456	AT4TE61985	.	+	ATREP10B	Helitron	RC	27	tiny	491	high	10071755	chromoarm	80	no-CHH	no-CHH	.	.	.	.	.
Chr4	13207169	13207252	AT4TE61990	.	-	HELITRONY1D	Helitron	RC	83	tiny	756	high	10073495	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	13207252	13207810	AT4TE61995	.	+	HELITRONY1C	Helitron	RC	558	short	120	medium	10073578	chromoarm	49	no-CHH	no-CHH	.	.	.	.	.
Chr4	13207810	13208198	AT4TE62000	.	+	ATREP3	Helitron	RC	388	short	1439	high	10074136	chromoarm	607	no-CHH	no-CHH	.	.	.	.	.
Chr4	13222267	13222403	AT4TE62080	.	+	ATREP10B	Helitron	RC	136	short	491	high	10088593	chromoarm	439	no-CHH	no-CHH	.	.	.	.	.
Chr4	13222403	13223010	AT4TE62085	.	-	HELITRONY1D	Helitron	RC	607	short	756	high	10088729	chromoarm	575	no-CHH	no-CHH	.	.	.	.	.
Chr4	13223010	13223217	AT4TE62090	.	+	ATREP10B	Helitron	RC	207	short	491	high	10089336	chromoarm	1182	no-CHH	no-CHH	.	.	.	.	.
Chr4	13231140	13231831	AT4TE62130	.	+	ARNOLDY1	MuDR	DNA	691	short	237	high	10097466	chromoarm	632	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	13232245	13232581	AT4TE62135	.	-	ATREP5	Helitron	RC	336	short	624	high	10098571	chromoarm	130	no-CHH	no-CHH	.	.	.	.	.
Chr4	13268927	13269341	AT4TE62330	.	-	HELITRONY1D	Helitron	RC	414	short	756	high	10135253	chromoarm	2645	no-CHH	no-CHH	.	.	.	.	.
Chr4	13273109	13273467	AT4TE62350	.	-	BRODYAGA1A	MuDR	DNA	358	short	586	high	10139435	chromoarm	1839	no-CHH	no-CHH	.	.	.	.	.
Chr4	13280941	13281085	AT4TE62390	.	+	ATREP3	Helitron	RC	144	short	1439	high	10147267	chromoarm	1284	no-CHH	no-CHH	.	.	.	.	.
Chr4	13281085	13281124	AT4TE62395	.	+	ATREP19	.	DNA	39	tiny	189	medium	10147411	chromoarm	1245	no-CHH	no-CHH	.	.	.	.	.
Chr4	13281124	13281550	AT4TE62400	.	-	ATREP10B	Helitron	RC	426	short	491	high	10147450	chromoarm	819	no-CHH	no-CHH	.	.	.	.	.
Chr4	13281550	13281622	AT4TE62405	.	-	ATREP4	Helitron	RC	72	tiny	832	high	10147876	chromoarm	747	no-CHH	no-CHH	.	.	.	.	.
Chr4	13316602	13317048	AT4TE62590	.	+	ATMU3N1	MuDR	DNA	446	short	19	low	10182928	chromoarm	186	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	13329803	13331052	AT4TE62660	.	-	ATLINE2	L1	LINE	1249	short	138	medium	10196129	chromoarm	1488	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	13331522	13332014	AT4TE62665	.	-	ATLINEIII	L1	LINE	492	short	196	medium	10197848	chromoarm	2084	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr4	13336624	13336839	AT4TE62680	.	-	ATMU1	MuDR	DNA	215	short	59	medium	10202950	chromoarm	471	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	13354316	13355089	AT4TE62770	.	+	ATREP10D	Helitron	RC	773	short	1295	high	10220642	chromoarm	139	no-CHH	no-CHH	.	.	.	.	.
Chr4	13355093	13355140	AT4TE62775	.	-	HELITRONY3	Helitron	RC	47	tiny	1399	high	10221419	chromoarm	88	no-CHH	no-CHH	.	.	.	.	.
Chr4	13361075	13361450	AT4TE62800	.	+	ATREP10	Helitron	RC	375	short	63	medium	10227401	chromoarm	1105	no-CHH	no-CHH	.	.	.	.	.
Chr4	13370014	13370874	AT4TE62850	.	+	ATREP10D	Helitron	RC	860	short	1295	high	10236340	chromoarm	3	no-CHH	no-CHH	.	.	.	.	.
Chr4	13370874	13371070	AT4TE62855	.	+	HELITRONY3	Helitron	RC	196	short	1399	high	10237200	chromoarm	306	no-CHH	no-CHH	.	.	.	.	.
Chr4	13374709	13374986	AT4TE62865	.	+	VANDAL4	MuDR	DNA	277	short	102	medium	10241035	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	13418317	13419394	AT4TE63090	.	+	HELITRONY3	Helitron	RC	1077	short	1399	high	10284643	chromoarm	234	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	13419873	13420047	AT4TE63095	.	-	VANDAL1	MuDR	DNA	174	short	80	medium	10286199	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	13433939	13434466	AT4TE63170	.	+	VANDAL17	MuDR	DNA	527	short	178	medium	10300265	chromoarm	0	no-CHH	no-CHH	ExpressedAndAnnotated	13435774	13434073	-	transcript_id-"7ed35279-bd5a-4edc-8a9d-a4d515d02f2e|8"
Chr4	13435969	13436661	AT4TE63175	.	+	HELITRONY3	Helitron	RC	692	short	1399	high	10302295	chromoarm	636	no-CHH	no-RdDM	.	.	.	.	.
Chr4	13444047	13444743	AT4TE63210	.	-	ATREP4	Helitron	RC	696	short	832	high	10310373	chromoarm	808	no-CHH	no-CHH	.	.	.	.	.
Chr4	13445026	13445155	AT4TE63215	.	+	LIMPET1	MuDR	DNA	129	short	116	medium	10311352	chromoarm	396	no-CHH	no-CHH	.	.	.	.	.
Chr4	13494217	13494648	AT4TE63480	.	+	ATREP19	.	DNA	431	short	189	medium	10360543	chromoarm	36	no-CHH	no-CHH	.	.	.	.	.
Chr4	13520678	13520790	AT4TE63620	.	+	VANDAL5	MuDR	DNA	112	short	85	medium	10387004	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	13523858	13524982	AT4TE63630	.	+	ATREP10D	Helitron	RC	1124	short	1295	high	10390184	chromoarm	48	no-CHH	no-CHH	.	.	.	.	.
Chr4	13536532	13536672	AT4TE63690	.	-	ATREP1	Helitron	RC	140	short	498	high	10402858	chromoarm	2250	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	13536672	13537669	AT4TE63695	.	-	ATREP11A	Helitron	RC	997	short	95	medium	10402998	chromoarm	1253	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	13537669	13537985	AT4TE63700	.	-	ATREP6	Helitron	RC	316	short	181	medium	10403995	chromoarm	937	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	13537985	13538023	AT4TE63705	.	+	VANDAL8	MuDR	DNA	38	tiny	123	medium	10404311	chromoarm	899	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	13624430	13624506	AT4TE64170	.	+	ATCOPIA8A	Copia	LTR	76	tiny	12	low	10490756	chromoarm	496	no-RdDM	no-CHH	.	.	.	.	.
Chr4	13624506	13624767	AT4TE64175	.	+	ATCOPIA8A	Copia	LTR	261	short	12	low	10490832	chromoarm	572	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr4	13624767	13632048	AT4TE64180	.	+	ATCOPIA8B	Copia	LTR	7281	long	8	low	10491093	chromoarm	833	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	13656881	13657805	AT4TE64310	.	+	ATREP5	Helitron	RC	924	short	624	high	10523207	chromoarm	989	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	13657805	13657909	AT4TE64315	.	+	HELITRONY1D	Helitron	RC	104	short	756	high	10524131	chromoarm	1913	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	13676212	13676318	AT4TE64410	.	-	ATCOPIA24	Copia	LTR	106	short	27	low	10542538	chromoarm	0	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	13681397	13681864	AT4TE64440	.	+	HELITRON4	Helitron	RC	467	short	199	medium	10547723	chromoarm	462	no-CHH	no-CHH	.	.	.	.	.
Chr4	13711375	13711581	AT4TE64600	.	+	BRODYAGA1A	MuDR	DNA	206	short	586	high	10577701	chromoarm	689	no-CHH	no-CHH	.	.	.	.	.
Chr4	13715165	13715533	AT4TE64610	.	-	ATREP5	Helitron	RC	368	short	624	high	10581491	chromoarm	368	no-CHH	no-CHH	.	.	.	.	.
Chr4	13723081	13723166	AT4TE64650	.	+	ATMU9	MuDR	DNA	85	tiny	16	low	10589407	chromoarm	345	no-CHH	no-CHH	.	.	.	.	.
Chr4	13736276	13736390	AT4TE64720	.	-	ATCOPIA68	Copia	LTR	114	short	43	low	10602602	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	13739368	13739779	AT4TE64730	.	-	ATREP19	.	DNA	411	short	189	medium	10605694	chromoarm	181	no-CHH	no-CHH	.	.	.	.	.
Chr4	13754870	13755226	AT4TE64810	.	-	META1	Copia	LTR	356	short	138	medium	10621196	chromoarm	210	no-CHH	no-CHH	.	.	.	.	.
Chr4	13778039	13778268	AT4TE64930	.	+	ATHATN3	HAT	DNA	229	short	70	medium	10644365	chromoarm	911	no-CHH	no-CHH	.	.	.	.	.
Chr4	13779014	13779082	AT4TE64935	.	+	ATHAT7	HAT	DNA	68	tiny	20	low	10645340	chromoarm	1886	no-CHH	no-CHH	.	.	.	.	.
Chr4	13779082	13780874	AT4TE64940	.	+	ATHAT3	HAT	DNA	1792	short	23	low	10645408	chromoarm	1878	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	13780874	13781259	AT4TE64945	.	+	ATHAT7	HAT	DNA	385	short	20	low	10647200	chromoarm	1493	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	13781424	13781584	AT4TE64950	.	+	ATHATN6	HAT	DNA	160	short	43	low	10647750	chromoarm	1168	no-CHH	no-RdDM	.	.	.	.	.
Chr4	13868648	13869387	AT4TE65420	.	+	ATREP15	Helitron	RC	739	short	1003	high	10734974	chromoarm	994	no-CHH	no-CHH	.	.	.	.	.
Chr4	13871404	13871673	AT4TE65430	.	+	VANDAL21	MuDR	DNA	269	short	64	medium	10737730	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	13871674	13871694	AT4TE65435	.	+	VANDAL1	MuDR	DNA	21	tiny	80	medium	10737999	chromoarm	0	.	.	LowExpressed	.	.	.	.
Chr4	13880090	13880155	AT4TE65480	.	-	ATDNAI27T9B	MuDR	DNA	65	tiny	43	low	10746416	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	13880276	13880341	AT4TE65485	.	-	ATDNAI27T9B	MuDR	DNA	65	tiny	43	low	10746602	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	13883157	13883262	AT4TE65495	.	-	ATCOPIA59	Copia	LTR	105	short	20	low	10749483	chromoarm	360	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	13885447	13885885	AT4TE65505	.	+	ARNOLDY2	MuDR	DNA	438	short	288	high	10751773	chromoarm	147	no-CHH	no-CHH	.	.	.	.	.
Chr4	13887248	13888108	AT4TE65510	.	+	SIMPLEGUY1	Harbinger	DNA	860	short	116	medium	10753574	chromoarm	28	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	13901985	13902166	AT4TE65590	.	-	ATREP4	Helitron	RC	181	short	832	high	10768311	chromoarm	46	no-CHH	no-CHH	.	.	.	.	.
Chr4	13902166	13902666	AT4TE65595	.	-	ATREP19	.	DNA	500	short	189	medium	10768492	chromoarm	0	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	13902666	13902741	AT4TE65600	.	+	ATHPOGON3	Pogo	DNA	75	tiny	118	medium	10768992	chromoarm	0	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	13903038	13903681	AT4TE65605	.	+	ATREP10C	Helitron	RC	643	short	123	medium	10769364	chromoarm	60	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	13903681	13903732	AT4TE65610	.	+	HELITRONY3	Helitron	RC	51	tiny	1399	high	10770007	chromoarm	703	no-CHH	no-CHH	.	.	.	.	.
Chr4	13913180	13913502	AT4TE65660	.	-	ATREP5	Helitron	RC	322	short	624	high	10779506	chromoarm	2441	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	13945904	13946170	AT4TE65840	.	+	ATENSPM1A	En-Spm	DNA	266	short	77	medium	10812230	chromoarm	0	no-CHH	no-CHH	ExpressedAndAnnotated	13945887	13948567	+	transcript_id-"4e3a8be4-1f7d-488c-be79-86cb2a893aa7|4"
Chr4	13974316	13974465	AT4TE65990	.	-	ATCOPIA87	Copia	LTR	149	short	19	low	10840642	chromoarm	0	no-CHH	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	14025169	14025265	AT4TE66260	.	-	ARNOLD1	MuDR	DNA	96	tiny	39	low	10891495	chromoarm	60	no-CHH	no-CHH	.	.	.	.	.
Chr4	14031145	14031414	AT4TE66290	.	-	HELITRONY1D	Helitron	RC	269	short	756	high	10897471	chromoarm	219	no-CHH	no-RdDM	.	.	.	.	.
Chr4	14096778	14097147	AT4TE66640	.	+	ATREP11	Helitron	RC	369	short	841	high	10963104	chromoarm	2175	no-CHH	no-CHH	.	.	.	.	.
Chr4	14128541	14129086	AT4TE66810	.	+	HELITRONY1A	Helitron	RC	545	short	271	high	10994867	chromoarm	959	no-CHH	no-CHH	.	.	.	.	.
Chr4	14163523	14163660	AT4TE67000	.	+	ATREP15	Helitron	RC	137	short	1003	high	11029849	chromoarm	328	no-CHH	no-CHH	.	.	.	.	.
Chr4	14163660	14164403	AT4TE67005	.	+	TNAT1A	.	DNA	743	short	162	medium	11029986	chromoarm	465	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	14164403	14164686	AT4TE67010	.	+	ATREP4	Helitron	RC	283	short	832	high	11030729	chromoarm	1208	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	14164686	14164713	AT4TE67015	.	-	HELITRONY3	Helitron	RC	27	tiny	1399	high	11031012	chromoarm	1491	no-CHH	no-CHH	.	.	.	.	.
Chr4	14186145	14187090	AT4TE67130	.	-	ATREP15	Helitron	RC	945	short	1003	high	11052471	chromoarm	4374	no-CHH	no-CHH	.	.	.	.	.
Chr4	14188943	14189420	AT4TE67135	.	-	ATREP10B	Helitron	RC	477	short	491	high	11055269	chromoarm	3267	no-CHH	no-CHH	.	.	.	.	.
Chr4	14196005	14196468	AT4TE67170	.	-	HELITRONY3	Helitron	RC	463	short	1399	high	11062331	chromoarm	2037	no-CHH	no-CHH	.	.	.	.	.
Chr4	14196468	14196590	AT4TE67175	.	-	BRODYAGA1A	MuDR	DNA	122	short	586	high	11062794	chromoarm	2500	no-CHH	no-CHH	.	.	.	.	.
Chr4	14220076	14220147	AT4TE67300	.	-	ATCOPIA57	Copia	LTR	71	tiny	48	low	11086402	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	14238430	14239113	AT4TE67400	.	-	HELITRONY1E	Helitron	RC	683	short	447	high	11104756	chromoarm	1753	no-CHH	no-CHH	.	.	.	.	.
Chr4	14239113	14240518	AT4TE67405	.	+	ATREP10D	Helitron	RC	1405	short	1295	high	11105439	chromoarm	348	no-CHH	no-CHH	.	.	.	.	.
Chr4	14249962	14249995	AT4TE67450	.	-	BRODYAGA2	MuDR	DNA	33	tiny	525	high	11116288	chromoarm	425	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	14249995	14250994	AT4TE67455	.	-	BRODYAGA2	MuDR	DNA	999	short	525	high	11116321	chromoarm	0	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	14258824	14263830	AT4TE67490	.	+	ATCOPIA46	Copia	LTR	5006	long	7	low	11125150	chromoarm	499	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	14267452	14267872	AT4TE67500	.	+	HELITRONY3	Helitron	RC	420	short	1399	high	11133778	chromoarm	542	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	14270043	14270556	AT4TE67510	.	+	ATDNA2T9C	MuDR	DNA	513	short	242	high	11136369	chromoarm	158	no-CHH	no-CHH	.	.	.	.	.
Chr4	14280182	14288304	AT4TE67560	.	-	VANDAL6	MuDR	DNA	8122	long	89	medium	11146508	chromoarm	166	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	14280441,14284593,14288166	14283026,14283650,14285064	+,-,-	transcript_id-"1d187e61-3495-4dec-9300-7cd07420c686|4",transcript_id-"7e817725-b7c0-476e-b0ef-cd4c0c5a0f03|601",transcript_id-"d0ed30f6-96ee-4d4a-ac29-b681315d98f0|7"
Chr4	14293646	14293741	AT4TE67590	.	+	ATENSPM6	En-Spm	DNA	95	tiny	151	medium	11159972	chromoarm	215	no-CHH	no-CHH	.	.	.	.	.
Chr4	14305235	14305545	AT4TE67650	.	-	ATHILA8A	Gypsy	LTR	310	short	97	medium	11171561	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	14309159	14309834	AT4TE67660	.	+	BRODYAGA2	MuDR	DNA	675	short	525	high	11175485	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	14309834	14310366	AT4TE67665	.	-	ATREP9	Helitron	RC	532	short	201	high	11176160	chromoarm	0	no-RdDM	no-CHH	.	.	.	.	.
Chr4	14327801	14327859	AT4TE67750	.	-	ATREP10D	Helitron	RC	58	tiny	1295	high	11194127	chromoarm	2588	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	14327859	14328735	AT4TE67755	.	-	ATREP10C	Helitron	RC	876	short	123	medium	11194185	chromoarm	2646	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	14328735	14329177	AT4TE67760	.	-	ATREP10B	Helitron	RC	442	short	491	high	11195061	chromoarm	3522	no-CHH	no-CHH	.	.	.	.	.
Chr4	14333491	14334241	AT4TE67780	.	+	TA11	L1	LINE	750	short	157	medium	11199817	chromoarm	0	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	14336804	14337112	AT4TE67790	.	-	ATDNA12T3_2	.	DNA	308	short	660	high	11203130	chromoarm	1549	no-CHH	no-CHH	.	.	.	.	.
Chr4	14339246	14339846	AT4TE67800	.	+	HELITRON4	Helitron	RC	600	short	199	medium	11205572	chromoarm	1293	no-CHH	no-CHH	.	.	.	.	.
Chr4	14340844	14341034	AT4TE67805	.	-	ATHILA5	Gypsy	LTR	190	short	131	medium	11207170	chromoarm	105	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	14358074	14358726	AT4TE67890	.	-	ATREP4	Helitron	RC	652	short	832	high	11224400	chromoarm	3209	no-CHH	no-CHH	.	.	.	.	.
Chr4	14362162	14362830	AT4TE67900	.	-	HELITRONY1D	Helitron	RC	668	short	756	high	11228488	chromoarm	6317	no-CHH	no-CHH	.	.	.	.	.
Chr4	14371449	14372283	AT4TE67950	.	+	ATREP10D	Helitron	RC	834	short	1295	high	11237775	chromoarm	703	no-CHH	no-CHH	.	.	.	.	.
Chr4	14373508	14374034	AT4TE67955	.	-	HELITRON4	Helitron	RC	526	short	199	medium	11239834	chromoarm	2762	no-CHH	no-CHH	.	.	.	.	.
Chr4	14377157	14378575	AT4TE67965	.	-	HELITRONY1E	Helitron	RC	1418	short	447	high	11243483	chromoarm	194	no-CHH	no-CHH	.	.	.	.	.
Chr4	14378575	14378748	AT4TE67970	.	+	ATREP4	Helitron	RC	173	short	832	high	11244901	chromoarm	21	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	14389526	14389557	AT4TE68030	.	-	HELITRONY3	Helitron	RC	31	tiny	1399	high	11255852	chromoarm	2	no-CHH	no-CHH	.	.	.	.	.
Chr4	14389557	14389820	AT4TE68035	.	-	ATREP3	Helitron	RC	263	short	1439	high	11255883	chromoarm	33	no-CHH	no-CHH	.	.	.	.	.
Chr4	14389820	14391017	AT4TE68040	.	-	ATREP3	Helitron	RC	1197	short	1439	high	11256146	chromoarm	296	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	14391017	14391063	AT4TE68045	.	+	ATREP10B	Helitron	RC	46	tiny	491	high	11257343	chromoarm	1169	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	14391063	14391236	AT4TE68050	.	-	ATREP15	Helitron	RC	173	short	1003	high	11257389	chromoarm	996	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	14393664	14393698	AT4TE68060	.	-	ATREP15	Helitron	RC	34	tiny	1003	high	11259990	chromoarm	361	no-CHH	no-CHH	.	.	.	.	.
Chr4	14393706	14394728	AT4TE68065	.	+	ATREP4	Helitron	RC	1022	short	832	high	11260032	chromoarm	403	no-CHH	no-CHH	.	.	.	.	.
Chr4	14417709	14417876	AT4TE68180	.	+	ATDNA12T3_2	.	DNA	167	short	660	high	11284035	chromoarm	949	no-CHH	no-CHH	.	.	.	.	.
Chr4	14428088	14428239	AT4TE68240	.	-	ATREP10B	Helitron	RC	151	short	491	high	11294414	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	14428239	14429045	AT4TE68245	.	+	ATREP1	Helitron	RC	806	short	498	high	11294565	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	14430753	14431709	AT4TE68250	.	+	ATREP10B	Helitron	RC	956	short	491	high	11297079	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	14433162	14434146	AT4TE68255	.	-	ATREP10D	Helitron	RC	984	short	1295	high	11299488	chromoarm	0	no-RdDM	no-CHH	.	.	.	.	.
Chr4	14448982	14449969	AT4TE68330	.	+	ATREP1	Helitron	RC	987	short	498	high	11315308	chromoarm	165	no-CHH	no-CHH	.	.	.	.	.
Chr4	14449969	14450024	AT4TE68335	.	+	ATREP1	Helitron	RC	55	tiny	498	high	11316295	chromoarm	110	no-CHH	no-CHH	.	.	.	.	.
Chr4	14457478	14457514	AT4TE68370	.	+	ATREP11	Helitron	RC	36	tiny	841	high	11323804	chromoarm	740	no-CHH	no-RdDM	.	.	.	.	.
Chr4	14457514	14457666	AT4TE68375	.	-	ATREP3	Helitron	RC	152	short	1439	high	11323840	chromoarm	776	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	14457666	14458664	AT4TE68380	.	-	ATREP2	Helitron	RC	998	short	164	medium	11323992	chromoarm	157	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	14527512	14527891	AT4TE68750	.	-	HELITRONY1D	Helitron	RC	379	short	756	high	11393838	chromoarm	642	no-CHH	no-CHH	.	.	.	.	.
Chr4	14530632	14530671	AT4TE68760	.	-	ATREP10A	Helitron	RC	39	tiny	279	high	11396958	chromoarm	929	no-CHH	no-CHH	.	.	.	.	.
Chr4	14530671	14530697	AT4TE68765	.	-	BRODYAGA2	MuDR	DNA	26	tiny	525	high	11396997	chromoarm	903	no-CHH	no-CHH	.	.	.	.	.
Chr4	14530697	14531436	AT4TE68770	.	+	ATREP15	Helitron	RC	739	short	1003	high	11397023	chromoarm	164	no-RdDM	no-RdDM	.	.	.	.	.
Chr4	14549557	14550272	AT4TE68870	.	-	ATREP10D	Helitron	RC	715	short	1295	high	11415883	chromoarm	2155	no-CHH	no-CHH	.	.	.	.	.
Chr4	14550577	14550940	AT4TE68875	.	-	ATREP15	Helitron	RC	363	short	1003	high	11416903	chromoarm	2515	no-CHH	no-CHH	.	.	.	.	.
Chr4	14550940	14551779	AT4TE68880	.	+	HELITRONY1D	Helitron	RC	839	short	756	high	11417266	chromoarm	1676	no-CHH	no-CHH	.	.	.	.	.
Chr4	14551779	14551863	AT4TE68885	.	+	ATREP15	Helitron	RC	84	tiny	1003	high	11418105	chromoarm	1592	no-CHH	no-CHH	.	.	.	.	.
Chr4	14551863	14552220	AT4TE68890	.	-	HELITRONY3	Helitron	RC	357	short	1399	high	11418189	chromoarm	1235	no-CHH	no-CHH	.	.	.	.	.
Chr4	14582015	14582605	AT4TE69050	.	+	ATCOPIA95	Copia	LTR	590	short	72	medium	11448341	chromoarm	534	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	14675849	14676661	AT4TE69550	.	-	ATREP15	Helitron	RC	812	short	1003	high	11542175	chromoarm	1589	no-CHH	no-CHH	.	.	.	.	.
Chr4	14683704	14683843	AT4TE69590	.	-	ATCOPIA13	Copia	LTR	139	short	35	low	11550030	chromoarm	220	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	14684521	14684787	AT4TE69595	.	-	HELITRONY1D	Helitron	RC	266	short	756	high	11550847	chromoarm	814	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	14694866	14695916	AT4TE69640	.	+	HELITRONY3	Helitron	RC	1050	short	1399	high	11561192	chromoarm	157	no-CHH	no-CHH	.	.	.	.	.
Chr4	14695916	14696246	AT4TE69645	.	-	ATREP15	Helitron	RC	330	short	1003	high	11562242	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	14696489	14697172	AT4TE69650	.	+	HELITRONY1B	Helitron	RC	683	short	414	high	11562815	chromoarm	11	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	14697172	14697708	AT4TE69655	.	-	ATREP3	Helitron	RC	536	short	1439	high	11563498	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	14711737	14711891	AT4TE69730	.	-	ATREP11	Helitron	RC	154	short	841	high	11578063	chromoarm	125	no-CHH	no-CHH	.	.	.	.	.
Chr4	14711891	14711969	AT4TE69735	.	-	ATREP11A	Helitron	RC	78	tiny	95	medium	11578217	chromoarm	279	no-CHH	no-RdDM	.	.	.	.	.
Chr4	14711969	14713368	AT4TE69740	.	-	ATREP10D	Helitron	RC	1399	short	1295	high	11578295	chromoarm	149	no-CHH	no-CHH	.	.	.	.	.
Chr4	14729194	14729637	AT4TE69830	.	+	ATREP15	Helitron	RC	443	short	1003	high	11595520	chromoarm	1493	no-CHH	no-CHH	.	.	.	.	.
Chr4	14739644	14739691	AT4TE69880	.	-	HELITRONY1B	Helitron	RC	47	tiny	414	high	11605970	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	14739691	14740269	AT4TE69885	.	+	ATREP11	Helitron	RC	578	short	841	high	11606017	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	14740842	14741086	AT4TE69890	.	+	BRODYAGA1A	MuDR	DNA	244	short	586	high	11607168	chromoarm	294	no-CHH	no-CHH	.	.	.	.	.
Chr4	14750235	14750900	AT4TE69940	.	+	ATHATN2	HAT	DNA	665	short	46	low	11616561	chromoarm	471	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	14751809	14752866	AT4TE69945	.	+	ATREP15	Helitron	RC	1057	short	1003	high	11618135	chromoarm	1661	no-CHH	no-CHH	.	.	.	.	.
Chr4	14752866	14753167	AT4TE69950	.	-	ATREP4	Helitron	RC	301	short	832	high	11619192	chromoarm	1360	no-CHH	no-CHH	.	.	.	.	.
Chr4	14777241	14778144	AT4TE70080	.	-	ATREP10D	Helitron	RC	903	short	1295	high	11643567	chromoarm	1321	no-CHH	no-CHH	.	.	.	.	.
Chr4	14782967	14783545	AT4TE70110	.	+	HELITRONY3	Helitron	RC	578	short	1399	high	11649293	chromoarm	3306	no-CHH	no-CHH	.	.	.	.	.
Chr4	14805536	14806252	AT4TE70230	.	+	ATREP19	.	DNA	716	short	189	medium	11671862	chromoarm	123	no-CHH	no-CHH	.	.	.	.	.
Chr4	14811271	14811534	AT4TE70260	.	+	ATENSPM5	En-Spm	DNA	263	short	111	medium	11677597	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	14811534	14811603	AT4TE70265	.	-	ATMU10	MuDR	DNA	69	tiny	87	medium	11677860	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	14880673	14880804	AT4TE70630	.	-	ATCOPIA87	Copia	LTR	131	short	19	low	11746999	chromoarm	401	no-CHH	no-CHH	.	.	.	.	.
Chr4	14884758	14885250	AT4TE70650	.	-	HELITRONY1D	Helitron	RC	492	short	756	high	11751084	chromoarm	1032	no-CHH	no-CHH	.	.	.	.	.
Chr4	14886735	14887372	AT4TE70655	.	-	HELITRONY3	Helitron	RC	637	short	1399	high	11753061	chromoarm	129	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	14887492	14887574	AT4TE70660	.	-	VANDALNX1	MuDR	DNA	82	tiny	14	low	11753818	chromoarm	886	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	14911695	14912675	AT4TE70790	.	+	SIMPLEGUY1	Harbinger	DNA	980	short	116	medium	11778021	chromoarm	655	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	14919472	14919775	AT4TE70830	.	-	ATCOPIA28	Copia	LTR	303	short	81	medium	11785798	chromoarm	829	no-CHH	no-CHH	.	.	.	.	.
Chr4	14923678	14924441	AT4TE70850	.	+	HELITRONY1B	Helitron	RC	763	short	414	high	11790004	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	14924441	14924474	AT4TE70855	.	-	ATREP8	Helitron	RC	33	tiny	75	medium	11790767	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	14936695	14937463	AT4TE70920	.	-	HELITRONY3	Helitron	RC	768	short	1399	high	11803021	chromoarm	226	no-CHH	no-CHH	.	.	.	.	.
Chr4	14970789	14971403	AT4TE71100	.	+	HELITRONY3	Helitron	RC	614	short	1399	high	11837115	chromoarm	808	no-CHH	no-CHH	.	.	.	.	.
Chr4	14978035	14979213	AT4TE71140	.	-	ATREP6	Helitron	RC	1178	short	181	medium	11844361	chromoarm	32	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	14988047	14988092	AT4TE71190	.	-	ATLANTYS3	Gypsy	LTR	45	tiny	142	medium	11854373	chromoarm	1434	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr4	14988092	14988818	AT4TE71195	.	+	VANDAL6	MuDR	DNA	726	short	89	medium	11854418	chromoarm	1479	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	15012452	15012482	AT4TE71320	.	-	VANDAL3	MuDR	DNA	30	tiny	177	medium	11878778	chromoarm	133	no-CHH	no-CHH	.	.	.	.	.
Chr4	15012482	15012937	AT4TE71325	.	-	VANDAL3	MuDR	DNA	455	short	177	medium	11878808	chromoarm	163	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	15012755,15012755	15013066,15013168	+,+	transcript_id-"a5944f4c-060c-452b-9d7c-fa7fad8d5403|6",transcript_id-"d08d44c9-1252-4309-aa10-819e8e7bf298|19"
Chr4	15013099	15013586	AT4TE71330	.	-	VANDAL3	MuDR	DNA	487	short	177	medium	11879425	chromoarm	780	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	15013586	15013671	AT4TE71335	.	-	VANDAL3	MuDR	DNA	85	tiny	177	medium	11879912	chromoarm	1267	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	15013671	15014864	AT4TE71340	.	-	VANDAL3	MuDR	DNA	1193	short	177	medium	11879997	chromoarm	641	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	15045956	15046109	AT4TE71510	.	-	ATGP8	Gypsy	LTR	153	short	92	medium	11912282	chromoarm	479	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	15230593	15230978	AT4TE72510	.	-	HELITRON4	Helitron	RC	385	short	199	medium	12096919	chromoarm	211	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	15243160	15243730	AT4TE72580	.	-	ATREP15	Helitron	RC	570	short	1003	high	12109486	chromoarm	528	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	15338868	15339050	AT4TE73090	.	-	TSCL	.	LINE?	182	short	81	medium	12205194	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	15342120	15342157	AT4TE73100	.	+	HELITRONY1E	Helitron	RC	37	tiny	447	high	12208446	chromoarm	40	no-CHH	no-CHH	.	.	.	.	.
Chr4	15342157	15343256	AT4TE73105	.	+	HELITRONY3	Helitron	RC	1099	short	1399	high	12208483	chromoarm	70	no-CHH	no-CHH	ExpressedAndAnnotated	15345190	15343077	-	transcript_id-"5e507257-09df-4f42-b165-b9659bf0eff8|3"
Chr4	15349806	15349968	AT4TE73140	.	+	SIMPLEGUY1	Harbinger	DNA	162	short	116	medium	12216132	chromoarm	0	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	15397471	15397737	AT4TE73400	.	+	BRODYAGA1	MuDR	DNA	266	short	251	high	12263797	chromoarm	3065	no-CHH	no-CHH	.	.	.	.	.
Chr4	15397744	15398694	AT4TE73405	.	-	BRODYAGA1A	MuDR	DNA	950	short	586	high	12264070	chromoarm	2108	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	15398694	15398836	AT4TE73410	.	-	BRODYAGA1A	MuDR	DNA	142	short	586	high	12265020	chromoarm	1966	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	15424417	15425029	AT4TE73550	.	+	HELITRONY1D	Helitron	RC	612	short	756	high	12290743	chromoarm	478	no-CHH	no-CHH	.	.	.	.	.
Chr4	15429697	15430160	AT4TE73580	.	-	ATREP11	Helitron	RC	463	short	841	high	12296023	chromoarm	648	no-CHH	no-CHH	.	.	.	.	.
Chr4	15430160	15431085	AT4TE73585	.	-	ATREP5	Helitron	RC	925	short	624	high	12296486	chromoarm	442	no-CHH	no-CHH	.	.	.	.	.
Chr4	15431085	15431251	AT4TE73590	.	+	HELITRONY1E	Helitron	RC	166	short	447	high	12297411	chromoarm	276	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	15431251	15431322	AT4TE73595	.	+	ATREP3	Helitron	RC	71	tiny	1439	high	12297577	chromoarm	205	no-CHH	no-CHH	.	.	.	.	.
Chr4	15441565	15441606	AT4TE73650	.	-	ATREP3	Helitron	RC	41	tiny	1439	high	12307891	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	15441606	15442207	AT4TE73655	.	-	ATREP2	Helitron	RC	601	short	164	medium	12307932	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	15442207	15442522	AT4TE73660	.	+	VANDAL8	MuDR	DNA	315	short	123	medium	12308533	chromoarm	0	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr4	15454098	15454199	AT4TE73720	.	-	ATREP15	Helitron	RC	101	short	1003	high	12320424	chromoarm	132	no-CHH	no-CHH	.	.	.	.	.
Chr4	15459069	15459665	AT4TE73750	.	-	ATCOPIA79	Copia	LTR	596	short	7	low	12325395	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	15461816	15462203	AT4TE73760	.	-	HELITRONY1D	Helitron	RC	387	short	756	high	12328142	chromoarm	204	no-CHH	no-CHH	.	.	.	.	.
Chr4	15493235	15493333	AT4TE73930	.	+	DT1	Mariner	DNA	98	tiny	123	medium	12359561	chromoarm	228	no-CHH	no-CHH	.	.	.	.	.
Chr4	15506160	15506506	AT4TE74000	.	+	VANDAL17	MuDR	DNA	346	short	178	medium	12372486	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	15509167	15509634	AT4TE74010	.	+	HELITRONY1D	Helitron	RC	467	short	756	high	12375493	chromoarm	355	no-CHH	no-CHH	.	.	.	.	.
Chr4	15512234	15512816	AT4TE74020	.	+	ATREP4	Helitron	RC	582	short	832	high	12378560	chromoarm	16	no-CHH	no-CHH	.	.	.	.	.
Chr4	15512816	15512841	AT4TE74025	.	+	ATDNA2T9C	MuDR	DNA	25	tiny	242	high	12379142	chromoarm	500	no-CHH	no-CHH	.	.	.	.	.
Chr4	15547812	15548149	AT4TE74210	.	-	ATIS112A	Harbinger	DNA	337	short	173	medium	12414138	chromoarm	123	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	15552113	15564459	AT4TE74230	.	-	ATLANTYS3	Gypsy	LTR	12346	long	142	medium	12418439	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	15559111	15559161	AT4TE74235	.	+	ATLANTYS3	Gypsy	LTR	50	tiny	142	medium	12425437	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	15559244	15562588	AT4TE74240	.	-	ATGP9B	Gypsy	LTR	3344	medium	27	low	12425570	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	15562629	15562776	AT4TE74245	.	+	ATLANTYS2	Gypsy	LTR	147	short	179	medium	12428955	chromoarm	2518	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	15562776	15563187	AT4TE74250	.	+	ATLANTYS3	Gypsy	LTR	411	short	142	medium	12429102	chromoarm	2107	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	15563187	15563830	AT4TE74255	.	+	ATLANTYS3	Gypsy	LTR	643	short	142	medium	12429513	chromoarm	1464	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	15564459	15564731	AT4TE74260	.	-	ATLANTYS1	Gypsy	LTR	272	short	153	medium	12430785	chromoarm	563	no-CHH	no-CHH	.	.	.	.	.
Chr4	15564735	15565547	AT4TE74265	.	-	ATLANTYS3	Gypsy	LTR	812	short	142	medium	12431061	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	15567424	15568219	AT4TE74275	.	+	ATREP5	Helitron	RC	795	short	624	high	12433750	chromoarm	350	no-CHH	no-CHH	.	.	.	.	.
Chr4	15585095	15585481	AT4TE74360	.	+	HELITRONY1D	Helitron	RC	386	short	756	high	12451421	chromoarm	467	no-CHH	no-CHH	.	.	.	.	.
Chr4	15591888	15592431	AT4TE74390	.	+	ATREP3	Helitron	RC	543	short	1439	high	12458214	chromoarm	528	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	15595556	15595861	AT4TE74400	.	-	HELITRONY3	Helitron	RC	305	short	1399	high	12461882	chromoarm	1476	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	15595862	15596742	AT4TE74405	.	-	SIMPLEHAT2	HAT	DNA	881	short	73	medium	12462187	chromoarm	1781	.	.	.	.	.	.	.
Chr4	15609952	15610027	AT4TE74470	.	-	HARBINGER	Harbinger	DNA	75	tiny	90	medium	12476278	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	15610208	15610300	AT4TE74475	.	-	HARBINGER	Harbinger	DNA	92	tiny	90	medium	12476534	chromoarm	0	no-CHH	no-CHH	ExpressedAndAnnotated	15611664	15608892	-	transcript_id-"f0ca029f-5e8a-4ecc-b85a-807abb7649c2|3"
Chr4	15616743	15617143	AT4TE74500	.	+	BRODYAGA1A	MuDR	DNA	400	short	586	high	12483069	chromoarm	490	no-CHH	no-CHH	.	.	.	.	.
Chr4	15624805	15625794	AT4TE74540	.	+	ATREP10B	Helitron	RC	989	short	491	high	12491131	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	15689223	15689356	AT4TE74880	.	+	ATCOPIA68	Copia	LTR	133	short	43	low	12555549	chromoarm	285	no-RdDM	no-CHH	.	.	.	.	.
Chr4	15698037	15698678	AT4TE74930	.	-	ATREP10D	Helitron	RC	641	short	1295	high	12564363	chromoarm	2225	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr4	15698678	15698724	AT4TE74935	.	+	HELITRONY3	Helitron	RC	46	tiny	1399	high	12565004	chromoarm	2179	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	15698995	15699195	AT4TE74940	.	+	ATDNATA1	Mariner	DNA	200	short	28	low	12565321	chromoarm	1708	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	15699652	15700261	AT4TE74945	.	-	HELITRONY1D	Helitron	RC	609	short	756	high	12565978	chromoarm	642	no-CHH	no-CHH	.	.	.	.	.
Chr4	15790300	15790513	AT4TE75430	.	-	ATDNAI27T9C	MuDR	DNA	213	short	108	medium	12656626	chromoarm	525	no-CHH	no-CHH	.	.	.	.	.
Chr4	15816043	15816685	AT4TE75570	.	-	ATREP13	Helitron	RC	643	short	106	medium	12682368	chromoarm	1134	.	.	.	.	.	.	.
Chr4	15816702	15816860	AT4TE75575	.	-	ATREP8	Helitron	RC	158	short	75	medium	12683028	chromoarm	1794	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	15825815	15825995	AT4TE75620	.	+	ATREP11	Helitron	RC	180	short	841	high	12692141	chromoarm	2352	no-CHH	no-CHH	.	.	.	.	.
Chr4	15825995	15826848	AT4TE75625	.	-	ATREP10A	Helitron	RC	853	short	279	high	12692321	chromoarm	1499	no-CHH	no-CHH	.	.	.	.	.
Chr4	15826848	15827061	AT4TE75630	.	+	HELITRONY1E	Helitron	RC	213	short	447	high	12693174	chromoarm	1286	no-CHH	no-CHH	.	.	.	.	.
Chr4	15848513	15848568	AT4TE75750	.	+	ATREP10B	Helitron	RC	55	tiny	491	high	12714839	chromoarm	208	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	15848568	15849754	AT4TE75755	.	+	ATREP3	Helitron	RC	1186	short	1439	high	12714894	chromoarm	263	no-CHH	no-CHH	.	.	.	.	.
Chr4	15849766	15849866	AT4TE75760	.	-	LIMPET1	MuDR	DNA	100	short	116	medium	12716092	chromoarm	267	no-CHH	no-CHH	.	.	.	.	.
Chr4	15922796	15922832	AT4TE76150	.	+	BRODYAGA2	MuDR	DNA	36	tiny	525	high	12789122	chromoarm	138	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	15922832	15924043	AT4TE76155	.	-	BRODYAGA2	MuDR	DNA	1211	short	525	high	12789158	chromoarm	174	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	15924043	15924082	AT4TE76160	.	-	BRODYAGA2	MuDR	DNA	39	tiny	525	high	12790369	chromoarm	266	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	15975142	15975342	AT4TE76440	.	+	ATREP1	Helitron	RC	200	short	498	high	12841468	chromoarm	234	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	16021408	16021454	AT4TE76690	.	-	ATREP10D	Helitron	RC	46	tiny	1295	high	12887734	chromoarm	711	no-CHH	no-CHH	.	.	.	.	.
Chr4	16021472	16021894	AT4TE76695	.	+	ATTIR16T3A	.	DNA	422	short	106	medium	12887798	chromoarm	611	no-CHH	no-CHH	.	.	.	.	.
Chr4	16021894	16021931	AT4TE76700	.	+	ATREP6	Helitron	RC	37	tiny	181	medium	12888220	chromoarm	574	no-CHH	no-CHH	.	.	.	.	.
Chr4	16023294	16023456	AT4TE76705	.	+	ATREP5	Helitron	RC	162	short	624	high	12889620	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	16054513	16055641	AT4TE76870	.	-	ATREP10	Helitron	RC	1128	short	63	medium	12920839	chromoarm	508	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	16055641	16056192	AT4TE76875	.	+	ATREP3	Helitron	RC	551	short	1439	high	12921967	chromoarm	0	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	16103404	16103503	AT4TE77130	.	+	ATTIRX1D	.	DNA	99	tiny	28	low	12969730	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	16180387	16180519	AT4TE77550	.	-	ATTIRTA1	Tc1	DNA	132	short	95	medium	13046713	chromoarm	545	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	16206787	16207283	AT4TE77690	.	-	HELITRONY1D	Helitron	RC	496	short	756	high	13073113	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	16207283	16207350	AT4TE77695	.	-	HELITRONY1D	Helitron	RC	67	tiny	756	high	13073609	chromoarm	0	no-RdDM	no-CHH	.	.	.	.	.
Chr4	16237070	16238151	AT4TE77850	.	+	ATREP10D	Helitron	RC	1081	short	1295	high	13103396	chromoarm	578	no-CHH	no-CHH	.	.	.	.	.
Chr4	16271365	16271751	AT4TE78030	.	+	ATREP15	Helitron	RC	386	short	1003	high	13137691	chromoarm	612	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	16279977	16280331	AT4TE78070	.	-	ATHILA6A	Gypsy	LTR	354	short	247	high	13146303	chromoarm	0	no-CHH	no-RdDM	.	.	.	.	.
Chr4	16312449	16312520	AT4TE78240	.	-	ATREP3	Helitron	RC	71	tiny	1439	high	13178775	chromoarm	476	no-CHH	no-CHH	.	.	.	.	.
Chr4	16312520	16312581	AT4TE78245	.	+	META1	Copia	LTR	61	tiny	138	medium	13178846	chromoarm	547	no-CHH	no-CHH	.	.	.	.	.
Chr4	16312581	16313281	AT4TE78250	.	+	HELITRONY1D	Helitron	RC	700	short	756	high	13178907	chromoarm	608	no-CHH	no-CHH	.	.	.	.	.
Chr4	16313281	16313389	AT4TE78255	.	-	ATREP11	Helitron	RC	108	short	841	high	13179607	chromoarm	614	no-RdDM	no-CHH	.	.	.	.	.
Chr4	16317216	16317750	AT4TE78270	.	-	ATREP10A	Helitron	RC	534	short	279	high	13183542	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	16377629	16378807	AT4TE78590	.	-	HELITRONY1E	Helitron	RC	1178	short	447	high	13243955	chromoarm	195	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	16378807	16378846	AT4TE78595	.	+	HELITRONY1E	Helitron	RC	39	tiny	447	high	13245133	chromoarm	156	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	16397060	16398022	AT4TE78690	.	+	ATREP19	.	DNA	962	short	189	medium	13263386	chromoarm	107	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	16424043	16424111	AT4TE78830	.	+	ATREP9	Helitron	RC	68	tiny	201	high	13290369	chromoarm	219	no-CHH	no-CHH	.	.	.	.	.
Chr4	16424111	16424439	AT4TE78835	.	+	ATREP5	Helitron	RC	328	short	624	high	13290437	chromoarm	273	no-CHH	no-CHH	.	.	.	.	.
Chr4	16445205	16445305	AT4TE78940	.	-	LIMPET1	MuDR	DNA	100	short	116	medium	13311531	chromoarm	17	no-CHH	no-CHH	.	.	.	.	.
Chr4	16469735	16471017	AT4TE79070	.	+	ATREP10D	Helitron	RC	1282	short	1295	high	13336061	chromoarm	938	no-CHH	no-CHH	.	.	.	.	.
Chr4	16515776	16516342	AT4TE79310	.	+	ATREP4	Helitron	RC	566	short	832	high	13382102	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	16521203	16521255	AT4TE79340	.	+	HELITRONY1D	Helitron	RC	52	tiny	756	high	13387529	chromoarm	842	no-RdDM	no-CHH	.	.	.	.	.
Chr4	16521255	16521688	AT4TE79345	.	+	BRODYAGA1A	MuDR	DNA	433	short	586	high	13387581	chromoarm	409	no-CHH	no-CHH	.	.	.	.	.
Chr4	16521688	16521722	AT4TE79350	.	+	ATREP4	Helitron	RC	34	tiny	832	high	13388014	chromoarm	375	no-CHH	no-CHH	.	.	.	.	.
Chr4	16548196	16548232	AT4TE79490	.	-	ATDNA2T9C	MuDR	DNA	36	tiny	242	high	13414522	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	16556114	16556438	AT4TE79530	.	-	ATIS112A	Harbinger	DNA	324	short	173	medium	13422440	chromoarm	17	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	16571498	16571569	AT4TE79610	.	+	ATREP14	Helitron	RC	71	tiny	47	low	13437824	chromoarm	224	no-CHH	no-CHH	.	.	.	.	.
Chr4	16571569	16573114	AT4TE79615	.	+	ATREP3	Helitron	RC	1545	short	1439	high	13437895	chromoarm	295	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	16587886	16588352	AT4TE79690	.	+	HELITRON4	Helitron	RC	466	short	199	medium	13454212	chromoarm	2999	no-CHH	no-CHH	.	.	.	.	.
Chr4	16592729	16593528	AT4TE79710	.	-	ATREP4	Helitron	RC	799	short	832	high	13459055	chromoarm	12	no-CHH	no-CHH	.	.	.	.	.
Chr4	16695651	16696018	AT4TE80260	.	-	ATREP1	Helitron	RC	367	short	498	high	13561977	chromoarm	264	no-CHH	no-CHH	.	.	.	.	.
Chr4	16719137	16720047	AT4TE80380	.	-	ARNOLDY2	MuDR	DNA	910	short	288	high	13585463	chromoarm	1036	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	16729211	16730433	AT4TE80430	.	+	SIMPLEGUY1	Harbinger	DNA	1222	short	116	medium	13595537	chromoarm	555	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	16730434	16730475	AT4TE80435	.	-	ARNOLDY2	MuDR	DNA	41	tiny	288	high	13596760	chromoarm	513	no-CHH	no-CHH	.	.	.	.	.
Chr4	16773839	16774057	AT4TE80660	.	-	ATIS112A	Harbinger	DNA	218	short	173	medium	13640165	chromoarm	436	no-CHH	no-CHH	.	.	.	.	.
Chr4	16782720	16783573	AT4TE80710	.	+	ATREP10A	Helitron	RC	854	short	279	high	13649045	chromoarm	1895	.	.	.	.	.	.	.
Chr4	16793834	16794729	AT4TE80770	.	+	HELITRONY1C	Helitron	RC	895	short	120	medium	13660160	chromoarm	373	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	16827050	16828109	AT4TE80940	.	-	ARNOLDY2	MuDR	DNA	1059	short	288	high	13693376	chromoarm	1090	no-CHH	no-CHH	.	.	.	.	.
Chr4	16828109	16828149	AT4TE80945	.	+	HELITRONY3	Helitron	RC	40	tiny	1399	high	13694435	chromoarm	1453	no-CHH	no-CHH	.	.	.	.	.
Chr4	16828149	16828296	AT4TE80950	.	+	ATREP11	Helitron	RC	147	short	841	high	13694475	chromoarm	1306	no-CHH	no-CHH	.	.	.	.	.
Chr4	16830804	16831680	AT4TE80960	.	+	ATMU3	MuDR	DNA	876	short	15	low	13697130	chromoarm	302	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	16844977	16845340	AT4TE81030	.	-	ATDNA2T9C	MuDR	DNA	363	short	242	high	13711303	chromoarm	1190	no-CHH	no-CHH	.	.	.	.	.
Chr4	16850855	16851956	AT4TE81060	.	+	HELITRONY3	Helitron	RC	1101	short	1399	high	13717181	chromoarm	276	no-CHH	no-CHH	.	.	.	.	.
Chr4	16852965	16853637	AT4TE81065	.	-	ATREP3	Helitron	RC	672	short	1439	high	13719291	chromoarm	130	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	16862977	16863130	AT4TE81110	.	-	ATREP5	Helitron	RC	153	short	624	high	13729303	chromoarm	1264	no-CHH	no-CHH	.	.	.	.	.
Chr4	16863130	16863170	AT4TE81115	.	-	ATREP3	Helitron	RC	40	tiny	1439	high	13729456	chromoarm	1417	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	16863170	16865216	AT4TE81120	.	-	ATREP3	Helitron	RC	2046	medium	1439	high	13729496	chromoarm	31	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	16878722	16879183	AT4TE81190	.	-	ATREP5	Helitron	RC	461	short	624	high	13745048	chromoarm	1555	no-CHH	no-CHH	.	.	.	.	.
Chr4	16996023	16996936	AT4TE81820	.	-	ATREP10D	Helitron	RC	913	short	1295	high	13862349	chromoarm	302	no-CHH	no-CHH	.	.	.	.	.
Chr4	17034218	17034328	AT4TE82020	.	+	META1	Copia	LTR	110	short	138	medium	13900544	chromoarm	356	no-CHH	no-CHH	.	.	.	.	.
Chr4	17034328	17034920	AT4TE82025	.	+	ATREP11	Helitron	RC	592	short	841	high	13900654	chromoarm	200	no-CHH	no-CHH	.	.	.	.	.
Chr4	17034920	17035024	AT4TE82030	.	-	ATREP6	Helitron	RC	104	short	181	medium	13901246	chromoarm	96	no-CHH	no-CHH	.	.	.	.	.
Chr4	17139749	17139798	AT4TE82600	.	-	ATREP4	Helitron	RC	49	tiny	832	high	14006075	chromoarm	130	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	17139798	17140237	AT4TE82605	.	+	ATREP1	Helitron	RC	439	short	498	high	14006124	chromoarm	179	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	17140237	17140602	AT4TE82610	.	-	ATREP4	Helitron	RC	365	short	832	high	14006563	chromoarm	618	no-CHH	no-CHH	.	.	.	.	.
Chr4	17141351	17141773	AT4TE82615	.	-	ATREP3	Helitron	RC	422	short	1439	high	14007677	chromoarm	1732	no-CHH	no-CHH	.	.	.	.	.
Chr4	17145806	17146169	AT4TE82630	.	-	VANDAL17	MuDR	DNA	363	short	178	medium	14012132	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	17146169	17146191	AT4TE82635	.	-	ATCOPIA5	Copia	LTR	22	tiny	16	low	14012495	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	17192415	17193338	AT4TE82880	.	+	ATREP4	Helitron	RC	923	short	832	high	14058741	chromoarm	213	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	17211991	17212583	AT4TE82980	.	-	ATREP15	Helitron	RC	592	short	1003	high	14078317	chromoarm	78	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	17213047	17214415	AT4TE82985	.	-	ARNOLDY1	MuDR	DNA	1368	short	237	high	14079373	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	17214415	17214483	AT4TE82990	.	+	ATREP1	Helitron	RC	68	tiny	498	high	14080741	chromoarm	644	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	17228080	17228774	AT4TE83060	.	+	ATREP3	Helitron	RC	694	short	1439	high	14094406	chromoarm	2	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	17232789	17233031	AT4TE83080	.	-	ATDNAI27T9C	MuDR	DNA	242	short	108	medium	14099115	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	17233035	17233463	AT4TE83085	.	+	VANDAL17	MuDR	DNA	428	short	178	medium	14099361	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	17261607	17262187	AT4TE83230	.	-	ATREP10D	Helitron	RC	580	short	1295	high	14127933	chromoarm	0	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	17262187	17262249	AT4TE83235	.	+	BRODYAGA2	MuDR	DNA	62	tiny	525	high	14128513	chromoarm	0	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	17262249	17263063	AT4TE83240	.	-	ATREP19	.	DNA	814	short	189	medium	14128575	chromoarm	60	no-CHH	no-CHH	.	.	.	.	.
Chr4	17263063	17263154	AT4TE83245	.	-	BRODYAGA1A	MuDR	DNA	91	tiny	586	high	14129389	chromoarm	511	no-CHH	no-CHH	.	.	.	.	.
Chr4	17339098	17339895	AT4TE83650	.	-	ATREP11	Helitron	RC	797	short	841	high	14205424	chromoarm	21	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	17339895	17339917	AT4TE83655	.	-	ATREP15	Helitron	RC	22	tiny	1003	high	14206221	chromoarm	818	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	17339918	17340911	AT4TE83660	.	-	ATREP1	Helitron	RC	993	short	498	high	14206244	chromoarm	325	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	17360533	17360702	AT4TE83770	.	+	ATENSPM1	En-Spm	DNA	169	short	30	low	14226859	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	17394129	17395120	AT4TE83950	.	-	HELITRONY3	Helitron	RC	991	short	1399	high	14260455	chromoarm	911	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	17396500	17397275	AT4TE83955	.	-	ATREP10D	Helitron	RC	775	short	1295	high	14262826	chromoarm	3282	no-CHH	no-CHH	.	.	.	.	.
Chr4	17416149	17416747	AT4TE84050	.	-	HELITRON4	Helitron	RC	598	short	199	medium	14282475	chromoarm	190	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	17416747	17416902	AT4TE84055	.	+	HELITRONY3	Helitron	RC	155	short	1399	high	14283073	chromoarm	35	no-CHH	no-CHH	ExpressedAndAnnotated	17416816	17420053	+	transcript_id-"ba4c646e-e81b-4fdd-8d05-38c8dece884f|5"
Chr4	17426393	17426589	AT4TE84100	.	-	ATMU11	MuDR	DNA	196	short	20	low	14292719	chromoarm	759	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	17448823	17449380	AT4TE84220	.	+	ATHATN6	HAT	DNA	557	short	43	low	14315149	chromoarm	579	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	17449380	17451147	AT4TE84225	.	-	ARNOLDY1	MuDR	DNA	1767	short	237	high	14315706	chromoarm	1002	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	17451147	17451378	AT4TE84230	.	+	HELITRONY3	Helitron	RC	231	short	1399	high	14317473	chromoarm	771	no-CHH	no-CHH	.	.	.	.	.
Chr4	17451378	17451466	AT4TE84235	.	-	HELITRONY3	Helitron	RC	88	tiny	1399	high	14317704	chromoarm	683	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	17470737	17471049	AT4TE84330	.	-	ATHAT10	HAT	DNA	312	short	35	low	14337063	chromoarm	2669	no-CHH	no-CHH	.	.	.	.	.
Chr4	17471940	17472998	AT4TE84335	.	+	HELITRONY3	Helitron	RC	1058	short	1399	high	14338266	chromoarm	720	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	17500894	17501119	AT4TE84480	.	+	ATREP15	Helitron	RC	225	short	1003	high	14367220	chromoarm	239	no-CHH	no-CHH	.	.	.	.	.
Chr4	17501120	17502316	AT4TE84485	.	+	ATREP1	Helitron	RC	1197	short	498	high	14367445	chromoarm	464	.	.	.	.	.	.	.
Chr4	17502316	17502370	AT4TE84490	.	-	ATDNA2T9A	MuDR	DNA	54	tiny	48	low	14368642	chromoarm	1661	no-CHH	no-CHH	.	.	.	.	.
Chr4	17503751	17504403	AT4TE84495	.	-	ATREP15	Helitron	RC	652	short	1003	high	14370077	chromoarm	244	no-CHH	no-CHH	.	.	.	.	.
Chr4	17511345	17511983	AT4TE84530	.	-	ATREP1	Helitron	RC	638	short	498	high	14377671	chromoarm	115	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	17520020	17520801	AT4TE84570	.	+	ATREP4	Helitron	RC	781	short	832	high	14386346	chromoarm	349	no-CHH	no-CHH	.	.	.	.	.
Chr4	17534228	17534415	AT4TE84640	.	+	BRODYAGA1A	MuDR	DNA	187	short	586	high	14400554	chromoarm	4037	no-CHH	no-RdDM	.	.	.	.	.
Chr4	17534415	17534650	AT4TE84645	.	-	ATDNATA1	Mariner	DNA	235	short	28	low	14400741	chromoarm	4224	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	17587026	17587058	AT4TE84920	.	-	ATREP5	Helitron	RC	32	tiny	624	high	14453352	chromoarm	829	no-CHH	no-CHH	.	.	.	.	.
Chr4	17587058	17588076	AT4TE84925	.	+	ATREP10B	Helitron	RC	1018	short	491	high	14453384	chromoarm	861	no-CHH	no-CHH	.	.	.	.	.
Chr4	17598844	17599438	AT4TE84980	.	-	ATREP4	Helitron	RC	594	short	832	high	14465170	chromoarm	15	no-CHH	no-CHH	.	.	.	.	.
Chr4	17600596	17601157	AT4TE84985	.	-	ATREP15	Helitron	RC	561	short	1003	high	14466922	chromoarm	489	no-CHH	no-CHH	.	.	.	.	.
Chr4	17608538	17608635	AT4TE85020	.	+	ATDNAI27T9C	MuDR	DNA	97	tiny	108	medium	14474864	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	17616014	17616422	AT4TE85060	.	-	ATREP19	.	DNA	408	short	189	medium	14482340	chromoarm	480	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	17638266	17638779	AT4TE85180	.	+	ATREP10B	Helitron	RC	513	short	491	high	14504592	chromoarm	869	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	17654770	17656015	AT4TE85270	.	+	HELITRONY3	Helitron	RC	1245	short	1399	high	14521096	chromoarm	2916	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	17656015	17656276	AT4TE85275	.	+	HELITRONY3	Helitron	RC	261	short	1399	high	14522341	chromoarm	2655	no-CHH	no-CHH	.	.	.	.	.
Chr4	17674150	17674501	AT4TE85370	.	-	ATLINE1_6	L1	LINE	351	short	129	medium	14540476	chromoarm	2158	no-CHH	no-CHH	ExpressedAndAnnotated	17674538,17674283	17674151,17674637	-,+	transcript_id-"9ee52ceb-c840-4662-8ba8-15bba23c8132|5",transcript_id-"e284581d-0cc6-4660-8126-249b92a6ec2c|3"
Chr4	17678562	17678634	AT4TE85390	.	+	ATREP10A	Helitron	RC	72	tiny	279	high	14544888	chromoarm	862	no-CHH	no-CHH	.	.	.	.	.
Chr4	17678634	17678707	AT4TE85395	.	+	ATREP3	Helitron	RC	73	tiny	1439	high	14544960	chromoarm	789	no-CHH	no-CHH	.	.	.	.	.
Chr4	17678707	17679121	AT4TE85400	.	-	ATDNA2T9C	MuDR	DNA	414	short	242	high	14545033	chromoarm	375	no-CHH	no-CHH	.	.	.	.	.
Chr4	17712147	17716980	AT4TE85580	.	+	ATCOPIA45	Copia	LTR	4833	medium	20	low	14578473	chromoarm	1253	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	17721274	17721619	AT4TE85600	.	+	HELITRONY1D	Helitron	RC	345	short	756	high	14587600	chromoarm	1956	no-CHH	no-CHH	.	.	.	.	.
Chr4	17722636	17723009	AT4TE85605	.	-	ATREP10B	Helitron	RC	373	short	491	high	14588962	chromoarm	790	no-CHH	no-CHH	.	.	.	.	.
Chr4	17759788	17760634	AT4TE85800	.	-	ATREP15	Helitron	RC	846	short	1003	high	14626114	chromoarm	262	no-CHH	no-CHH	.	.	.	.	.
Chr4	17776601	17776697	AT4TE85890	.	-	ATLINE2	L1	LINE	96	tiny	138	medium	14642927	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	17785907	17786211	AT4TE85940	.	-	VANDAL17	MuDR	DNA	304	short	178	medium	14652233	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	17799583	17799763	AT4TE86010	.	+	ATCOPIA71	Copia	LTR	180	short	9	low	14665909	chromoarm	825	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr4	17808803	17809458	AT4TE86060	.	-	ATREP5	Helitron	RC	655	short	624	high	14675129	chromoarm	724	no-CHH	no-CHH	.	.	.	.	.
Chr4	17809458	17809489	AT4TE86065	.	+	ATREP15	Helitron	RC	31	tiny	1003	high	14675784	chromoarm	693	no-CHH	no-CHH	.	.	.	.	.
Chr4	17821790	17821972	AT4TE86130	.	+	VANDAL1	MuDR	DNA	182	short	80	medium	14688116	chromoarm	0	no-CHH	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	17837355	17837743	AT4TE86210	.	+	HELITRON4	Helitron	RC	388	short	199	medium	14703681	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	17837743	17837766	AT4TE86215	.	-	ATREP3	Helitron	RC	23	tiny	1439	high	14704069	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	17842674	17843109	AT4TE86240	.	+	ATREP4	Helitron	RC	435	short	832	high	14709000	chromoarm	1682	no-CHH	no-CHH	.	.	.	.	.
Chr4	17843109	17844358	AT4TE86245	.	+	ATREP3	Helitron	RC	1249	short	1439	high	14709435	chromoarm	433	no-CHH	no-CHH	.	.	.	.	.
Chr4	17844358	17844470	AT4TE86250	.	-	ATREP10D	Helitron	RC	112	short	1295	high	14710684	chromoarm	321	no-CHH	no-CHH	.	.	.	.	.
Chr4	17854979	17855010	AT4TE86310	.	-	HELITRON4	Helitron	RC	31	tiny	199	medium	14721305	chromoarm	677	no-CHH	no-CHH	.	.	.	.	.
Chr4	17855010	17855407	AT4TE86315	.	+	BRODYAGA1A	MuDR	DNA	397	short	586	high	14721336	chromoarm	556	no-CHH	no-CHH	.	.	.	.	.
Chr4	17879742	17880655	AT4TE86440	.	+	ATREP5	Helitron	RC	913	short	624	high	14746068	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	17880658	17880687	AT4TE86445	.	+	ATREP4	Helitron	RC	29	tiny	832	high	14746984	chromoarm	0	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr4	17924253	17924414	AT4TE86680	.	-	ATTIRX1A	.	DNA	161	short	63	medium	14790579	chromoarm	432	no-CHH	no-CHH	.	.	.	.	.
Chr4	18062591	18062961	AT4TE87430	.	-	HELITRONY1D	Helitron	RC	370	short	756	high	14928917	chromoarm	415	no-CHH	no-CHH	.	.	.	.	.
Chr4	18077131	18077545	AT4TE87510	.	+	ATREP5	Helitron	RC	414	short	624	high	14943457	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	18087320	18087451	AT4TE87560	.	-	ATCOPIA72	Copia	LTR	131	short	4	low	14953646	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	18201101	18201976	AT4TE88170	.	+	HELITRONY1C	Helitron	RC	875	short	120	medium	15067427	chromoarm	630	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr4	18232243	18233052	AT4TE88330	.	+	ATREP10D	Helitron	RC	809	short	1295	high	15098569	chromoarm	598	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	18247715	18248352	AT4TE88410	.	-	VANDALNX2	MuDR	DNA	637	short	37	low	15114041	chromoarm	1042	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr4	18249594	18249618	AT4TE88415	.	+	HELITRONY1A	Helitron	RC	24	tiny	271	high	15115920	chromoarm	2413	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr4	18249618	18249664	AT4TE88420	.	-	ATREP10C	Helitron	RC	46	tiny	123	medium	15115944	chromoarm	2367	no-CHH	DCL3-RdDM	.	.	.	.	.
Chr4	18249664	18251647	AT4TE88425	.	-	ATREP10B	Helitron	RC	1983	short	491	high	15115990	chromoarm	384	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	18251647	18252050	AT4TE88430	.	-	ATREP10D	Helitron	RC	403	short	1295	high	15117973	chromoarm	0	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	18253302	18254011	AT4TE88435	.	-	ATREP3	Helitron	RC	709	short	1439	high	15119628	chromoarm	437	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	18256955	18257212	AT4TE88445	.	+	TSCL	.	LINE?	257	short	81	medium	15123281	chromoarm	251	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	18268677	18268751	AT4TE88500	.	-	ATHILA	Gypsy	LTR	74	tiny	198	medium	15135003	chromoarm	0	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	18304196	18304442	AT4TE88690	.	+	HELITRONY1D	Helitron	RC	246	short	756	high	15170522	chromoarm	761	no-CHH	no-CHH	.	.	.	.	.
Chr4	18364152	18364964	AT4TE89010	.	+	ATREP10D	Helitron	RC	812	short	1295	high	15230478	chromoarm	44	no-CHH	no-CHH	.	.	.	.	.
Chr4	18368775	18368902	AT4TE89030	.	-	ATLINE1_3A	L1	LINE	127	short	160	medium	15235101	chromoarm	42	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	18377478	18377624	AT4TE89080	.	-	ATMUN1	MuDR	DNA	146	short	107	medium	15243804	chromoarm	238	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr4	18377624	18377865	AT4TE89085	.	-	ATDNATA1	Mariner	DNA	241	short	28	low	15243950	chromoarm	384	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	18391249	18391700	AT4TE89150	.	+	ATREP3	Helitron	RC	451	short	1439	high	15257575	chromoarm	710	no-CHH	no-CHH	.	.	.	.	.
Chr4	18403099	18403548	AT4TE89210	.	-	HELITRONY3	Helitron	RC	449	short	1399	high	15269425	chromoarm	53	no-CHH	no-CHH	.	.	.	.	.
Chr4	18409374	18409914	AT4TE89240	.	+	HELITRON2	Helitron	RC	540	short	194	medium	15275700	chromoarm	112	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	18425374	18425575	AT4TE89320	.	-	ATREP10D	Helitron	RC	201	short	1295	high	15291700	chromoarm	468	no-CHH	no-CHH	.	.	.	.	.
Chr4	18425575	18426622	AT4TE89325	.	-	ATREP9	Helitron	RC	1047	short	201	high	15291901	chromoarm	626	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	18426622	18426667	AT4TE89330	.	-	ATREP9	Helitron	RC	45	tiny	201	high	15292948	chromoarm	581	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	18426667	18426688	AT4TE89335	.	+	ATREP9	Helitron	RC	21	tiny	201	high	15292993	chromoarm	560	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr4	18426688	18426709	AT4TE89340	.	-	ATREP10	Helitron	RC	21	tiny	63	medium	15293014	chromoarm	539	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	18434154	18434273	AT4TE89380	.	-	ARNOLDY2	MuDR	DNA	119	short	288	high	15300480	chromoarm	573	no-CHH	no-CHH	.	.	.	.	.
Chr4	18434273	18435359	AT4TE89385	.	-	ARNOLDY1	MuDR	DNA	1086	short	237	high	15300599	chromoarm	226	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	18435369	18435528	AT4TE89390	.	+	HELITRONY1B	Helitron	RC	159	short	414	high	15301695	chromoarm	57	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	18442982	18443601	AT4TE89430	.	-	ATREP3	Helitron	RC	619	short	1439	high	15309308	chromoarm	77	no-CHH	no-CHH	.	.	.	.	.
Chr4	18473803	18473824	AT4TE89590	.	+	ATREP5	Helitron	RC	21	tiny	624	high	15340129	chromoarm	783	no-CHH	RDR6-RdDM	.	.	.	.	.
Chr4	18473824	18474589	AT4TE89595	.	+	HELITRONY1B	Helitron	RC	765	short	414	high	15340150	chromoarm	18	no-RdDM	no-CHH	.	.	.	.	.
Chr4	18474589	18474614	AT4TE89600	.	+	ATREP15	Helitron	RC	25	tiny	1003	high	15340915	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	18481523	18482407	AT4TE89640	.	+	ATREP11	Helitron	RC	884	short	841	high	15347849	chromoarm	339	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	18481710	18482169	AT4TE89645	.	+	ATREP19	.	DNA	459	short	189	medium	15348036	chromoarm	526	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	18482407	18483304	AT4TE89650	.	+	ATREP1	Helitron	RC	897	short	498	high	15348733	chromoarm	1223	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr4	18498649	18499833	AT4TE89730	.	+	HELITRONY3	Helitron	RC	1184	short	1399	high	15364975	chromoarm	75	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	18499194	18499647	AT4TE89735	.	+	ATREP19	.	DNA	453	short	189	medium	15365520	chromoarm	261	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	18510438	18510591	AT4TE89790	.	-	HARBINGER	Harbinger	DNA	153	short	90	medium	15376764	chromoarm	149	no-CHH	no-CHH	ExpressedAndAnnotated	18510566	18508378	-	transcript_id-"e66e99ee-7322-41c5-b782-2a2dbf147e5e|75"
Chr4	18514362	18514600	AT4TE89810	.	+	HELITRONY3	Helitron	RC	238	short	1399	high	15380688	chromoarm	223	no-CHH	no-CHH	.	.	.	.	.
Chr4	18514600	18515406	AT4TE89815	.	+	BRODYAGA2	MuDR	DNA	806	short	525	high	15380926	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr4	18532227	18532383	AT4TE89900	.	+	HELITRONY1E	Helitron	RC	156	short	447	high	15398553	chromoarm	139	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr4	18532383	18533642	AT4TE89905	.	+	BRODYAGA2	MuDR	DNA	1259	short	525	high	15398709	chromoarm	295	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr4	18533642	18533706	AT4TE89910	.	-	BRODYAGA2	MuDR	DNA	64	tiny	525	high	15399968	chromoarm	487	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr4	18553991	18554390	AT4TE90020	.	+	ATENSPM1A	En-Spm	DNA	399	short	77	medium	15420317	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	18567402	18567462	AT4TE90090	.	-	ATREP11	Helitron	RC	60	tiny	841	high	15433728	chromoarm	3675	no-CHH	no-CHH	.	.	.	.	.
Chr4	18567462	18567747	AT4TE90095	.	-	DT1	Mariner	DNA	285	short	123	medium	15433788	chromoarm	3735	no-CHH	no-CHH	.	.	.	.	.
Chr4	18567747	18567888	AT4TE90100	.	+	ATREP3	Helitron	RC	141	short	1439	high	15434073	chromoarm	3793	no-CHH	no-CHH	.	.	.	.	.
Chr4	18570971	18571421	AT4TE90110	.	+	ATREP10B	Helitron	RC	450	short	491	high	15437297	chromoarm	260	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	18572932	18573049	AT4TE90115	.	+	ATCOPIA68	Copia	LTR	117	short	43	low	15439258	chromoarm	158	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr4	18577861	18578075	AT4TE90140	.	-	ATLINE1_6	L1	LINE	214	short	129	medium	15444187	chromoarm	357	no-CHH	no-CHH	.	.	.	.	.
Chr4	18582650	18582968	AT4TE90160	.	-	HELITRONY3	Helitron	RC	318	short	1399	high	15448976	chromoarm	275	no-CHH	no-CHH	.	.	.	.	.
Chr5	5231	5289	AT5TE00010	.	-	TSCL	.	LINE?	58	tiny	81	medium	11189249	chromoarm	45	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	21119	21431	AT5TE00070	.	-	ATCOPIA50	Copia	LTR	312	short	17	low	11173107	chromoarm	307	no-CHH	no-CHH	.	.	.	.	.
Chr5	38226	39100	AT5TE00130	.	-	ATREP1	Helitron	RC	874	short	498	high	11155438	chromoarm	470	no-CHH	no-CHH	.	.	.	.	.
Chr5	56620	56891	AT5TE00200	.	-	ATLINE1_4	L1	LINE	271	short	102	medium	11137647	chromoarm	893	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	64771	71199	AT5TE00230	.	-	ATCOPIA27	Copia	LTR	6428	long	19	low	11123339	chromoarm	1192	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	70888	68798	-	transcript_id-"0923f8ea-ef2e-4e85-a4d7-6760dcfa33d4|4"
Chr5	112965	113011	AT5TE00390	.	+	BRODYAGA2	MuDR	DNA	46	tiny	525	high	11081527	chromoarm	822	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	113011	113503	AT5TE00395	.	-	HELITRONY1A	Helitron	RC	492	short	271	high	11081035	chromoarm	681	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	113503	113748	AT5TE00400	.	-	BRODYAGA1A	MuDR	DNA	245	short	586	high	11080790	chromoarm	436	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	122736	123036	AT5TE00430	.	-	ATREP10D	Helitron	RC	300	short	1295	high	11071502	chromoarm	288	no-CHH	no-CHH	.	.	.	.	.
Chr5	135830	141287	AT5TE00480	.	+	Unassigned	.	Unassigned	5457	long	.	low	11053251	chromoarm	1023	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	155856	156040	AT5TE00530	.	+	VANDAL17	MuDR	DNA	184	short	178	medium	11038498	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	162742	162877	AT5TE00550	.	+	ATMU1	MuDR	DNA	135	short	59	medium	11031661	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	198274	198647	AT5TE00680	.	+	ATHPOGON3	Pogo	DNA	373	short	118	medium	10995891	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	216735	217357	AT5TE00750	.	-	HELITRONY1D	Helitron	RC	622	short	756	high	10977181	chromoarm	152	no-CHH	no-CHH	.	.	.	.	.
Chr5	250798	250963	AT5TE00870	.	-	HARBINGER	Harbinger	DNA	165	short	90	medium	10943575	chromoarm	1036	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	282026	282450	AT5TE00990	.	-	ATREP11	Helitron	RC	424	short	841	high	10912088	chromoarm	745	no-CHH	no-CHH	.	.	.	.	.
Chr5	317427	317642	AT5TE01120	.	-	RathE1_cons	.	RathE1_cons	215	short	213	high	10876896	chromoarm	2676	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	334349	335083	AT5TE01180	.	-	ATREP3	Helitron	RC	734	short	1439	high	10859455	chromoarm	169	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	335083	335154	AT5TE01185	.	-	BRODYAGA2	MuDR	DNA	71	tiny	525	high	10859384	chromoarm	475	no-CHH	no-CHH	.	.	.	.	.
Chr5	346591	348570	AT5TE01220	.	+	ATREP10D	Helitron	RC	1979	short	1295	high	10845968	chromoarm	1941	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	348580	348623	AT5TE01225	.	+	ATREP5	Helitron	RC	43	tiny	624	high	10845915	chromoarm	2512	no-CHH	no-CHH	.	.	.	.	.
Chr5	349766	350410	AT5TE01230	.	+	ATREP2A	Helitron	RC	644	short	116	medium	10844128	chromoarm	725	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	350410	350537	AT5TE01235	.	+	ATREP11	Helitron	RC	127	short	841	high	10844001	chromoarm	598	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	353771	354992	AT5TE01245	.	+	ATREP3	Helitron	RC	1221	short	1439	high	10839546	chromoarm	1758	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	354993	355184	AT5TE01250	.	+	ATREP3	Helitron	RC	192	short	1439	high	10839354	chromoarm	2765	.	.	.	.	.	.	.
Chr5	355185	355211	AT5TE01255	.	+	ATREP10D	Helitron	RC	27	tiny	1295	high	10839327	chromoarm	2738	.	.	.	.	.	.	.
Chr5	355211	355844	AT5TE01260	.	-	ATHATN7	HAT	DNA	633	short	71	medium	10838694	chromoarm	2105	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	355844	355951	AT5TE01265	.	-	ATREP10D	Helitron	RC	107	short	1295	high	10838587	chromoarm	1998	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	355951	357116	AT5TE01270	.	-	ATREP8	Helitron	RC	1165	short	75	medium	10837422	chromoarm	833	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	393551	394732	AT5TE01410	.	+	HELITRONY3	Helitron	RC	1181	short	1399	high	10799806	chromoarm	1021	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	418519	418988	AT5TE01500	.	+	HELITRONY3	Helitron	RC	469	short	1399	high	10775550	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	473125	473163	AT5TE01700	.	-	HELITRONY1D	Helitron	RC	38	tiny	756	high	10721375	chromoarm	728	no-RdDM	no-CHH	.	.	.	.	.
Chr5	473163	473902	AT5TE01705	.	+	ATREP15	Helitron	RC	739	short	1003	high	10720636	chromoarm	376	no-CHH	no-CHH	.	.	.	.	.
Chr5	490079	491096	AT5TE01760	.	+	HELITRONY3	Helitron	RC	1017	short	1399	high	10703442	chromoarm	837	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	508450	508505	AT5TE01820	.	-	ATLINEIII	L1	LINE	55	tiny	196	medium	10686033	chromoarm	258	no-CHH	no-CHH	.	.	.	.	.
Chr5	522815	523368	AT5TE01870	.	-	ATREP15	Helitron	RC	553	short	1003	high	10671170	chromoarm	132	no-CHH	no-CHH	.	.	.	.	.
Chr5	545123	545245	AT5TE01950	.	+	ATHAT3	HAT	DNA	122	short	23	low	10649293	chromoarm	700	no-CHH	no-CHH	.	.	.	.	.
Chr5	610117	610329	AT5TE02190	.	-	HELITRONY3A	Helitron	RC	212	short	49	low	10584209	chromoarm	0	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	620136	620347	AT5TE02230	.	+	VANDAL17	MuDR	DNA	211	short	178	medium	10574191	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	676467	676488	AT5TE02440	.	-	BRODYAGA2	MuDR	DNA	21	tiny	525	high	10518050	chromoarm	631	no-CHH	no-CHH	.	.	.	.	.
Chr5	676488	676957	AT5TE02445	.	-	META1	Copia	LTR	469	short	138	medium	10517581	chromoarm	162	no-CHH	no-CHH	.	.	.	.	.
Chr5	676957	677052	AT5TE02450	.	-	BRODYAGA2	MuDR	DNA	95	tiny	525	high	10517486	chromoarm	67	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	706296	706343	AT5TE02560	.	-	ATREP10D	Helitron	RC	47	tiny	1295	high	10488195	chromoarm	914	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	706343	706608	AT5TE02565	.	-	ATREP11	Helitron	RC	265	short	841	high	10487930	chromoarm	654	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	706608	707160	AT5TE02570	.	-	ATREP2	Helitron	RC	552	short	164	medium	10487378	chromoarm	102	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	707160	707217	AT5TE02575	.	+	VANDAL8	MuDR	DNA	57	tiny	123	medium	10487321	chromoarm	45	no-CHH	no-CHH	.	.	.	.	.
Chr5	743370	743534	AT5TE02700	.	-	HELITRONY2	Helitron	RC	164	short	198	medium	10451004	chromoarm	2314	no-CHH	no-CHH	.	.	.	.	.
Chr5	743534	743905	AT5TE02705	.	+	HELITRONY3	Helitron	RC	371	short	1399	high	10450633	chromoarm	1943	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	743905	745157	AT5TE02710	.	+	SIMPLEHAT2	HAT	DNA	1252	short	73	medium	10449381	chromoarm	691	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	745157	745190	AT5TE02715	.	+	HELITRONY3	Helitron	RC	33	tiny	1399	high	10449348	chromoarm	658	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	745190	745241	AT5TE02720	.	+	HELITRONY3	Helitron	RC	51	tiny	1399	high	10449297	chromoarm	607	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	768942	769302	AT5TE02810	.	+	ATREP1	Helitron	RC	360	short	498	high	10425236	chromoarm	333	no-CHH	no-CHH	.	.	.	.	.
Chr5	785467	786413	AT5TE02870	.	-	HELITRONY1B	Helitron	RC	946	short	414	high	10408125	chromoarm	1470	no-CHH	no-CHH	.	.	.	.	.
Chr5	786413	787250	AT5TE02875	.	+	ATREP4	Helitron	RC	837	short	832	high	10407288	chromoarm	1338	no-CHH	no-CHH	.	.	.	.	.
Chr5	806201	806819	AT5TE02940	.	+	ATREP9	Helitron	RC	618	short	201	high	10387719	chromoarm	908	no-CHH	no-CHH	.	.	.	.	.
Chr5	828055	828623	AT5TE03020	.	+	ATREP1	Helitron	RC	568	short	498	high	10365915	chromoarm	1035	no-CHH	no-CHH	.	.	.	.	.
Chr5	832703	832871	AT5TE03030	.	+	VANDAL17	MuDR	DNA	168	short	178	medium	10361667	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	942548	943201	AT5TE03440	.	-	ATREP10D	Helitron	RC	653	short	1295	high	10251337	chromoarm	2737	no-CHH	no-CHH	.	.	.	.	.
Chr5	1001060	1002214	AT5TE03660	.	+	HELITRONY1B	Helitron	RC	1154	short	414	high	10192324	chromoarm	113	no-CHH	no-CHH	.	.	.	.	.
Chr5	1026498	1027067	AT5TE03750	.	+	ATHATN6	HAT	DNA	569	short	43	low	10167471	chromoarm	702	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	1057263	1058099	AT5TE03860	.	+	ATREP10D	Helitron	RC	836	short	1295	high	10136439	chromoarm	57	no-CHH	no-CHH	.	.	.	.	.
Chr5	1059151	1059491	AT5TE03865	.	+	HELITRON4	Helitron	RC	340	short	199	medium	10135047	chromoarm	15	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	1063517	1063548	AT5TE03875	.	-	ATHATN1	HAT	DNA	31	tiny	69	medium	10130990	chromoarm	260	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	1063548	1064584	AT5TE03880	.	+	ATREP15	Helitron	RC	1036	short	1003	high	10129954	chromoarm	26	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	1065362	1067895	AT5TE03885	.	+	VANDAL2N1	MuDR	DNA	2533	medium	51	medium	10126643	chromoarm	437	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	1081323	1081570	AT5TE03930	.	-	ATMUN1	MuDR	DNA	247	short	107	medium	10112968	chromoarm	255	no-CHH	no-CHH	.	.	.	.	.
Chr5	1094042	1094120	AT5TE03980	.	+	ATREP4	Helitron	RC	78	tiny	832	high	10100418	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	1094120	1095191	AT5TE03985	.	-	ATREP4	Helitron	RC	1071	short	832	high	10099347	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	1095191	1095234	AT5TE03990	.	+	HELITRONY3	Helitron	RC	43	tiny	1399	high	10099304	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	1109826	1109931	AT5TE04040	.	+	ATTIRX1A	.	DNA	105	short	63	medium	10084607	chromoarm	825	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	1115681	1115832	AT5TE04060	.	-	ATLINE1_4	L1	LINE	151	short	102	medium	10078706	chromoarm	1569	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	1116294	1116803	AT5TE04065	.	-	ATREP4	Helitron	RC	509	short	832	high	10077735	chromoarm	2182	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	1164925	1165183	AT5TE04240	.	-	TA11	L1	LINE	258	short	157	medium	10029355	chromoarm	1218	no-CHH	no-CHH	.	.	.	.	.
Chr5	1165579	1168417	AT5TE04245	.	-	TA11	L1	LINE	2838	medium	157	medium	10026121	chromoarm	799	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	1168417	1168521	AT5TE04250	.	-	TA11	L1	LINE	104	short	157	medium	10026017	chromoarm	695	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	1180385	1181904	AT5TE04290	.	+	ATREP10C	Helitron	RC	1519	short	123	medium	10012634	chromoarm	258	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	1201102	1201410	AT5TE04360	.	+	ATMU10	MuDR	DNA	308	short	87	medium	9993128	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	1218713	1218919	AT5TE04420	.	-	ATREP3	Helitron	RC	206	short	1439	high	9975619	chromoarm	957	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	1218919	1219794	AT5TE04425	.	-	ATREP5	Helitron	RC	875	short	624	high	9974744	chromoarm	82	no-CHH	no-CHH	.	.	.	.	.
Chr5	1219795	1219823	AT5TE04430	.	-	HELITRONY1E	Helitron	RC	28	tiny	447	high	9974715	chromoarm	53	no-CHH	no-CHH	.	.	.	.	.
Chr5	1243754	1243923	AT5TE04520	.	+	VANDAL21	MuDR	DNA	169	short	64	medium	9950615	chromoarm	56	no-CHH	no-CHH	.	.	.	.	.
Chr5	1293506	1293672	AT5TE04700	.	+	LIMPET1	MuDR	DNA	166	short	116	medium	9900866	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	1302465	1302499	AT5TE04730	.	-	HELITRONY3	Helitron	RC	34	tiny	1399	high	9892039	chromoarm	166	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	1302499	1303101	AT5TE04735	.	-	ATREP4	Helitron	RC	602	short	832	high	9891437	chromoarm	200	no-CHH	no-CHH	.	.	.	.	.
Chr5	1306302	1306434	AT5TE04745	.	-	ATREP10D	Helitron	RC	132	short	1295	high	9888104	chromoarm	746	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	1306434	1307473	AT5TE04750	.	-	ATREP10D	Helitron	RC	1039	short	1295	high	9887065	chromoarm	878	no-CHH	no-CHH	.	.	.	.	.
Chr5	1326723	1326897	AT5TE04820	.	-	ATENSPM1A	En-Spm	DNA	174	short	77	medium	9867641	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	1334456	1334933	AT5TE04850	.	+	TA11	L1	LINE	477	short	157	medium	9859605	chromoarm	663	no-CHH	no-CHH	.	.	.	.	.
Chr5	1344325	1344420	AT5TE04880	.	-	ATCOPIA86	Copia	LTR	95	tiny	7	low	9850118	chromoarm	1893	no-CHH	no-CHH	.	.	.	.	.
Chr5	1344767	1345714	AT5TE04885	.	+	HELITRONY3	Helitron	RC	947	short	1399	high	9848824	chromoarm	599	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr5	1353541	1353676	AT5TE04910	.	+	TNAT1A	.	DNA	135	short	162	medium	9840862	chromoarm	563	no-CHH	no-CHH	.	.	.	.	.
Chr5	1404283	1404534	AT5TE05100	.	+	DT1	Mariner	DNA	251	short	123	medium	9790004	chromoarm	612	no-CHH	no-CHH	.	.	.	.	.
Chr5	1427637	1427957	AT5TE05190	.	-	ATENSPM1A	En-Spm	DNA	320	short	77	medium	9766581	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	1427957	1428036	AT5TE05195	.	-	ATENSPM1A	En-Spm	DNA	79	tiny	77	medium	9766502	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	1450831	1452202	AT5TE05270	.	+	ATREP10D	Helitron	RC	1371	short	1295	high	9742336	chromoarm	1263	no-CHH	no-CHH	.	.	.	.	.
Chr5	1482191	1482685	AT5TE05380	.	+	ATSINE2A	.	SINE	494	short	33	low	9711853	chromoarm	643	no-CHH	no-CHH	.	.	.	.	.
Chr5	1485676	1489443	AT5TE05390	.	-	ATREP15	Helitron	RC	3767	medium	1003	high	9705095	chromoarm	0	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	1486719	1487030	AT5TE05395	.	+	ATREP10D	Helitron	RC	311	short	1295	high	9707508	chromoarm	229	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	1489443	1489897	AT5TE05400	.	-	BRODYAGA1	MuDR	DNA	454	short	251	high	9704641	chromoarm	1475	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	1489897	1489919	AT5TE05405	.	-	ATREP15	Helitron	RC	22	tiny	1003	high	9704619	chromoarm	1719	no-CHH	no-CHH	.	.	.	.	.
Chr5	1501773	1502465	AT5TE05440	.	+	HELITRONY1E	Helitron	RC	692	short	447	high	9692073	chromoarm	927	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	1507151	1507232	AT5TE05450	.	-	ATCOPIA59	Copia	LTR	81	tiny	20	low	9687306	chromoarm	211	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	1510120	1510959	AT5TE05460	.	+	HELITRONY2	Helitron	RC	839	short	198	medium	9683579	chromoarm	130	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	1510959	1510998	AT5TE05465	.	+	HELITRONY3	Helitron	RC	39	tiny	1399	high	9683540	chromoarm	233	no-RdDM	no-CHH	.	.	.	.	.
Chr5	1515163	1515432	AT5TE05475	.	-	ATREP16	MuDR	DNA	269	short	47	low	9679106	chromoarm	245	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	1516008	1516308	AT5TE05480	.	+	ATREP16	MuDR	DNA	300	short	47	low	9678230	chromoarm	1090	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	1518774	1519047	AT5TE05485	.	+	RP1_AT	.	DNA	274	short	87	medium	9675491	chromoarm	1305	.	.	.	.	.	.	.
Chr5	1559123	1559206	AT5TE05630	.	-	ATTIRX1D	.	DNA	83	tiny	28	low	9635332	chromoarm	571	no-CHH	no-RdDM	.	.	.	.	.
Chr5	1611211	1611535	AT5TE05820	.	-	ATREP10D	Helitron	RC	324	short	1295	high	9583003	chromoarm	541	no-CHH	no-CHH	.	.	.	.	.
Chr5	1645808	1645868	AT5TE05950	.	+	ATHILA6A	Gypsy	LTR	60	tiny	247	high	9548670	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	1655270	1655409	AT5TE05980	.	+	ATREP10A	Helitron	RC	139	short	279	high	9539129	chromoarm	585	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	1655409	1656010	AT5TE05985	.	-	ATREP15	Helitron	RC	601	short	1003	high	9538528	chromoarm	724	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	1675664	1676281	AT5TE06050	.	-	ATREP10D	Helitron	RC	617	short	1295	high	9518257	chromoarm	1049	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	1676281	1676824	AT5TE06055	.	+	ATHPOGON1	Pogo	DNA	543	short	174	medium	9517714	chromoarm	506	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	1676824	1677050	AT5TE06060	.	-	ATREP15	Helitron	RC	226	short	1003	high	9517488	chromoarm	280	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	1686975	1687878	AT5TE06100	.	-	ATREP4	Helitron	RC	903	short	832	high	9506660	chromoarm	66	no-RdDM	no-CHH	.	.	.	.	.
Chr5	1687244	1687593	AT5TE06105	.	+	ATTIRX1D	.	DNA	349	short	28	low	9506945	chromoarm	335	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	1689610	1690141	AT5TE06110	.	+	HELITRONY1A	Helitron	RC	531	short	271	high	9504397	chromoarm	184	no-CHH	no-CHH	.	.	.	.	.
Chr5	1706637	1706777	AT5TE06170	.	-	ATENSPM1A	En-Spm	DNA	140	short	77	medium	9487761	chromoarm	0	no-CHH	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	1706853	1707390	AT5TE06175	.	+	BRODYAGA1	MuDR	DNA	537	short	251	high	9487148	chromoarm	148	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	1755263	1755657	AT5TE06350	.	+	HELITRONY1D	Helitron	RC	394	short	756	high	9438881	chromoarm	252	no-CHH	no-CHH	.	.	.	.	.
Chr5	1810535	1812051	AT5TE06550	.	+	ATREP3	Helitron	RC	1516	short	1439	high	9382487	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	1812051	1812602	AT5TE06555	.	+	ATN9_1	MuDR	DNA	551	short	65	medium	9381936	chromoarm	0	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	1815732	1816409	AT5TE06565	.	-	HELITRON1	Helitron	RC	677	short	130	medium	9378129	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	1871717	1872122	AT5TE06770	.	-	HELITRON2	Helitron	RC	405	short	194	medium	9322416	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	1896151	1896184	AT5TE06860	.	-	ATREP10A	Helitron	RC	33	tiny	279	high	9298354	chromoarm	2093	no-CHH	no-CHH	.	.	.	.	.
Chr5	1896184	1896398	AT5TE06865	.	-	ATREP10D	Helitron	RC	214	short	1295	high	9298140	chromoarm	2126	no-CHH	no-CHH	.	.	.	.	.
Chr5	1896398	1896548	AT5TE06870	.	-	ATREP3	Helitron	RC	150	short	1439	high	9297990	chromoarm	2340	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	1896548	1898926	AT5TE06875	.	-	ATREP3	Helitron	RC	2378	medium	1439	high	9295612	chromoarm	2490	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	1898926	1899149	AT5TE06880	.	-	ATREP4	Helitron	RC	223	short	832	high	9295389	chromoarm	3605	no-CHH	no-CHH	.	.	.	.	.
Chr5	1899149	1899240	AT5TE06885	.	-	ATREP5	Helitron	RC	91	tiny	624	high	9295298	chromoarm	3514	no-CHH	no-CHH	.	.	.	.	.
Chr5	1899240	1899267	AT5TE06890	.	+	ATREP10A	Helitron	RC	27	tiny	279	high	9295271	chromoarm	3487	no-CHH	no-CHH	.	.	.	.	.
Chr5	1935617	1936132	AT5TE07030	.	+	ATREP10D	Helitron	RC	515	short	1295	high	9258406	chromoarm	33	no-CHH	no-CHH	.	.	.	.	.
Chr5	1961293	1961362	AT5TE07120	.	-	TAG3N1	HAT	DNA	69	tiny	97	medium	9233176	chromoarm	158	no-CHH	RDR6-RdDM	.	.	.	.	.
Chr5	1979119	1979996	AT5TE07190	.	-	ATREP7	Helitron	RC	877	short	164	medium	9214542	chromoarm	530	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	1981367	1982222	AT5TE07195	.	+	HELITRONY3	Helitron	RC	855	short	1399	high	9212316	chromoarm	221	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	1982222	1982295	AT5TE07200	.	+	ATREP4	Helitron	RC	73	tiny	832	high	9212243	chromoarm	148	no-CHH	no-CHH	.	.	.	.	.
Chr5	1987369	1987475	AT5TE07210	.	-	ATIS112A	Harbinger	DNA	106	short	173	medium	9207063	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	2055759	2056582	AT5TE07460	.	-	ATREP1	Helitron	RC	823	short	498	high	9137956	chromoarm	158	no-CHH	no-CHH	.	.	.	.	.
Chr5	2071544	2072640	AT5TE07520	.	+	SIMPLEGUY1	Harbinger	DNA	1096	short	116	medium	9121898	chromoarm	1260	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	2072640	2073007	AT5TE07525	.	+	HELITRONY3	Helitron	RC	367	short	1399	high	9121531	chromoarm	2356	no-CHH	no-CHH	.	.	.	.	.
Chr5	2097226	2097686	AT5TE07610	.	+	ATREP1	Helitron	RC	460	short	498	high	9096852	chromoarm	401	no-CHH	no-CHH	.	.	.	.	.
Chr5	2097686	2097780	AT5TE07615	.	-	ATREP19	.	DNA	94	tiny	189	medium	9096758	chromoarm	307	no-CHH	no-CHH	.	.	.	.	.
Chr5	2097780	2097835	AT5TE07620	.	-	BRODYAGA1	MuDR	DNA	55	tiny	251	high	9096703	chromoarm	252	no-CHH	no-CHH	.	.	.	.	.
Chr5	2100856	2101248	AT5TE07630	.	+	ATREP3	Helitron	RC	392	short	1439	high	9093290	chromoarm	2125	no-CHH	no-CHH	.	.	.	.	.
Chr5	2101248	2102677	AT5TE07635	.	+	ATREP10A	Helitron	RC	1429	short	279	high	9091861	chromoarm	696	no-CHH	no-CHH	.	.	.	.	.
Chr5	2102677	2102979	AT5TE07640	.	+	HELITRONY1D	Helitron	RC	302	short	756	high	9091559	chromoarm	394	no-CHH	no-CHH	.	.	.	.	.
Chr5	2105860	2107449	AT5TE07650	.	-	ATLINE1_2	L1	LINE	1589	short	41	low	9087089	chromoarm	180	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	2135584	2135765	AT5TE07750	.	+	ATIS112A	Harbinger	DNA	181	short	173	medium	9058773	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	2136871	2136977	AT5TE07755	.	-	ATCOPIA4	Copia	LTR	106	short	11	low	9057561	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	2173753	2173852	AT5TE07890	.	-	RP1_AT	.	DNA	99	tiny	87	medium	9020686	chromoarm	1059	no-CHH	no-CHH	.	.	.	.	.
Chr5	2174401	2174710	AT5TE07895	.	-	BRODYAGA1A	MuDR	DNA	309	short	586	high	9019828	chromoarm	249	no-CHH	no-CHH	.	.	.	.	.
Chr5	2174710	2174787	AT5TE07900	.	+	HELITRONY1D	Helitron	RC	77	tiny	756	high	9019751	chromoarm	172	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	2186749	2186776	AT5TE07940	.	-	HELITRONY1D	Helitron	RC	27	tiny	756	high	9007762	chromoarm	1032	no-CHH	no-CHH	.	.	.	.	.
Chr5	2186776	2186796	AT5TE07945	.	-	ATREP11	Helitron	RC	20	tiny	841	high	9007742	chromoarm	1059	no-CHH	no-CHH	.	.	.	.	.
Chr5	2186796	2189238	AT5TE07950	.	-	ATREP5	Helitron	RC	2442	medium	624	high	9005300	chromoarm	1079	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	2189238	2189363	AT5TE07955	.	+	HELITRONY1D	Helitron	RC	125	short	756	high	9005175	chromoarm	980	no-CHH	no-CHH	.	.	.	.	.
Chr5	2222045	2222111	AT5TE08070	.	+	ATHAT1	HAT	DNA	66	tiny	105	medium	8972427	chromoarm	697	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	2222111	2222331	AT5TE08075	.	+	VANDAL1	MuDR	DNA	220	short	80	medium	8972207	chromoarm	477	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	2245490	2245553	AT5TE08160	.	+	HELITRONY1E	Helitron	RC	63	tiny	447	high	8948985	chromoarm	333	no-CHH	no-CHH	.	.	.	.	.
Chr5	2245553	2246071	AT5TE08165	.	-	ATREP10A	Helitron	RC	518	short	279	high	8948467	chromoarm	396	no-CHH	no-CHH	.	.	.	.	.
Chr5	2246071	2246247	AT5TE08170	.	-	ATREP10B	Helitron	RC	176	short	491	high	8948291	chromoarm	914	no-CHH	no-CHH	.	.	.	.	.
Chr5	2248398	2248526	AT5TE08175	.	-	ATREP15	Helitron	RC	128	short	1003	high	8946012	chromoarm	3241	no-CHH	no-CHH	.	.	.	.	.
Chr5	2248526	2249676	AT5TE08180	.	-	ATREP4	Helitron	RC	1150	short	832	high	8944862	chromoarm	2560	no-CHH	no-CHH	.	.	.	.	.
Chr5	2249676	2249957	AT5TE08185	.	+	ATREP5	Helitron	RC	281	short	624	high	8944581	chromoarm	2279	no-CHH	no-CHH	.	.	.	.	.
Chr5	2249957	2250002	AT5TE08190	.	-	HELITRONY1E	Helitron	RC	45	tiny	447	high	8944536	chromoarm	2234	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	2250002	2252172	AT5TE08195	.	-	ATREP11	Helitron	RC	2170	medium	841	high	8942366	chromoarm	64	no-CHH	no-CHH	.	.	.	.	.
Chr5	2252172	2252312	AT5TE08200	.	+	ATREP9	Helitron	RC	140	short	201	high	8942226	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	2256599	2257215	AT5TE08210	.	-	ATREP4	Helitron	RC	616	short	832	high	8937323	chromoarm	581	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	2257227	2257310	AT5TE08215	.	+	BRODYAGA2	MuDR	DNA	83	tiny	525	high	8937228	chromoarm	1209	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	2257474	2262962	AT5TE08220	.	-	Unassigned	.	Unassigned	5488	long	.	low	8931576	chromoarm	1456	no-RdDM	no-RdDM	ExpressedAndAnnotated	2257532,2257622	2257333,2257333	-,-	transcript_id-"bc71b684-047b-4b5d-939d-16d093872a28|3",transcript_id-"18f98c64-4e0b-4acb-ba44-0541d6dea505|137"
Chr5	2276195	2276444	AT5TE08270	.	-	RP1_AT	.	DNA	249	short	87	medium	8918094	chromoarm	260	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	2280550	2280649	AT5TE08280	.	+	ATCOPIA68	Copia	LTR	99	tiny	43	low	8913889	chromoarm	171	no-CHH	no-CHH	.	.	.	.	.
Chr5	2289070	2289711	AT5TE08310	.	+	ATLINE1_1	L1	LINE	642	short	61	medium	8904827	chromoarm	403	.	.	.	.	.	.	.
Chr5	2289726	2290100	AT5TE08315	.	+	ATREP10	Helitron	RC	374	short	63	medium	8904438	chromoarm	1060	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	2290100	2290153	AT5TE08320	.	+	ATREP10A	Helitron	RC	53	tiny	279	high	8904385	chromoarm	1434	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	2312288	2312862	AT5TE08400	.	-	ATREP15	Helitron	RC	574	short	1003	high	8881676	chromoarm	206	no-CHH	no-CHH	.	.	.	.	.
Chr5	2347705	2347731	AT5TE08530	.	+	AT9NMU1	MuDR	DNA	26	tiny	45	low	8846807	chromoarm	429	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr5	2347731	2348649	AT5TE08535	.	-	AT9NMU1	MuDR	DNA	918	short	45	low	8845889	chromoarm	455	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	2348649	2348697	AT5TE08540	.	-	AT9NMU1	MuDR	DNA	48	tiny	45	low	8845841	chromoarm	849	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr5	2351730	2351902	AT5TE08550	.	-	SIMPLEHAT2	HAT	DNA	172	short	73	medium	8842636	chromoarm	364	no-CHH	no-CHH	.	.	.	.	.
Chr5	2374075	2377446	AT5TE08630	.	+	ATLINE1_1	L1	LINE	3371	medium	61	medium	8817092	chromoarm	411	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	2438690	2439948	AT5TE08860	.	-	ATREP4	Helitron	RC	1258	short	832	high	8754590	chromoarm	1368	no-CHH	no-CHH	.	.	.	.	.
Chr5	2439052	2439525	AT5TE08865	.	+	ATREP3	Helitron	RC	473	short	1439	high	8755013	chromoarm	1730	no-CHH	no-CHH	.	.	.	.	.
Chr5	2441252	2443637	AT5TE08870	.	+	ATCOPIA18	Copia	LTR	2385	medium	2	low	8750901	chromoarm	3452	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	2444510	2444710	AT5TE08875	.	-	ATLINE2	L1	LINE	200	short	138	medium	8749828	chromoarm	2379	no-CHH	no-CHH	.	.	.	.	.
Chr5	2445741	2446365	AT5TE08880	.	+	ATREP1	Helitron	RC	624	short	498	high	8748173	chromoarm	724	no-CHH	no-CHH	.	.	.	.	.
Chr5	2490265	2490521	AT5TE09040	.	+	ATREP5	Helitron	RC	256	short	624	high	8704017	chromoarm	890	no-CHH	no-CHH	.	.	.	.	.
Chr5	2499575	2499954	AT5TE09070	.	+	ATENSPM6	En-Spm	DNA	379	short	151	medium	8694584	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	2500594	2501464	AT5TE09075	.	-	ATDNA2T9A	MuDR	DNA	870	short	48	low	8693074	chromoarm	48	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	2510625	2511099	AT5TE09100	.	-	ATCOPIA87	Copia	LTR	474	short	19	low	8683439	chromoarm	122	no-CHH	no-CHH	.	.	.	.	.
Chr5	2567367	2567547	AT5TE09310	.	+	HELITRONY1E	Helitron	RC	180	short	447	high	8626991	chromoarm	2058	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	2567547	2567615	AT5TE09315	.	-	HELITRONY1E	Helitron	RC	68	tiny	447	high	8626923	chromoarm	1990	no-CHH	no-CHH	.	.	.	.	.
Chr5	2567615	2568819	AT5TE09320	.	-	ATREP3	Helitron	RC	1204	short	1439	high	8625719	chromoarm	786	no-CHH	no-CHH	.	.	.	.	.
Chr5	2602956	2603130	AT5TE09450	.	-	ATREP11	Helitron	RC	174	short	841	high	8591408	chromoarm	278	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	2603141	2605573	AT5TE09455	.	+	ATREP5	Helitron	RC	2432	medium	624	high	8588965	chromoarm	463	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	2605573	2605697	AT5TE09460	.	+	ATREP15	Helitron	RC	124	short	1003	high	8588841	chromoarm	957	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	2635397	2635733	AT5TE09570	.	+	HELITRONY1D	Helitron	RC	336	short	756	high	8558805	chromoarm	182	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	2752323	2752343	AT5TE10000	.	-	ATREP10D	Helitron	RC	20	tiny	1295	high	8442195	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	2752343	2752899	AT5TE10005	.	+	BRODYAGA2	MuDR	DNA	556	short	525	high	8441639	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	2839411	2840007	AT5TE10320	.	+	ATREP5	Helitron	RC	596	short	624	high	8354531	chromoarm	1528	no-CHH	no-CHH	.	.	.	.	.
Chr5	2847998	2848241	AT5TE10350	.	+	ATMU7	MuDR	DNA	243	short	32	low	8346297	chromoarm	510	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	2855977	2856251	AT5TE10380	.	+	ATMU10	MuDR	DNA	274	short	87	medium	8338287	chromoarm	0	no-CHH	no-CHH	ExpressedAndAnnotated	2855707	2858934	+	transcript_id-"1244b4d9-a30c-40ea-b8cf-b4a6dcfa3f08|3"
Chr5	2860539	2860740	AT5TE10390	.	+	RP1_AT	.	DNA	201	short	87	medium	8333798	chromoarm	395	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	2870845	2871212	AT5TE10430	.	-	TAG2	HAT	DNA	367	short	86	medium	8323326	chromoarm	346	no-CHH	no-CHH	.	.	.	.	.
Chr5	2895446	2895482	AT5TE10520	.	-	BRODYAGA1A	MuDR	DNA	36	tiny	586	high	8299056	chromoarm	738	no-CHH	no-CHH	.	.	.	.	.
Chr5	2895482	2896124	AT5TE10525	.	+	HELITRONY1E	Helitron	RC	642	short	447	high	8298414	chromoarm	550	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	2896124	2896690	AT5TE10530	.	+	ATREP6	Helitron	RC	566	short	181	medium	8297848	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	2896690	2897055	AT5TE10535	.	-	ATREP10D	Helitron	RC	365	short	1295	high	8297483	chromoarm	0	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	2897055	2897539	AT5TE10540	.	-	ATREP4	Helitron	RC	484	short	832	high	8296999	chromoarm	141	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	2897539	2897561	AT5TE10545	.	+	ATDNA2T9B	MuDR	DNA	22	tiny	26	low	8296977	chromoarm	625	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	2897561	2897664	AT5TE10550	.	+	ATREP3	Helitron	RC	103	short	1439	high	8296874	chromoarm	647	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	2897878	2898083	AT5TE10555	.	-	HELITRONY1D	Helitron	RC	205	short	756	high	8296455	chromoarm	964	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	2910886	2910989	AT5TE10600	.	+	TSCL	.	LINE?	103	short	81	medium	8283549	chromoarm	323	no-CHH	no-CHH	.	.	.	.	.
Chr5	2928204	2928302	AT5TE10660	.	-	ATDNAI27T9C	MuDR	DNA	98	tiny	108	medium	8266236	chromoarm	13	no-CHH	no-CHH	.	.	.	.	.
Chr5	2947017	2947605	AT5TE10730	.	+	ATREP15	Helitron	RC	588	short	1003	high	8246933	chromoarm	721	no-CHH	no-CHH	.	.	.	.	.
Chr5	2953271	2953945	AT5TE10750	.	-	ATREP5	Helitron	RC	674	short	624	high	8240593	chromoarm	88	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	2971019	2971338	AT5TE10810	.	-	HELITRON5	Helitron	RC	319	short	56	medium	8223200	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	3005870	3007470	AT5TE10940	.	+	VANDAL1N1	MuDR	DNA	1600	short	52	medium	8187068	chromoarm	304	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	3018223	3018687	AT5TE10980	.	+	ATREP7	Helitron	RC	464	short	164	medium	8175851	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	3018688	3018742	AT5TE10985	.	+	ATREP7	Helitron	RC	55	tiny	164	medium	8175796	chromoarm	461	.	.	.	.	.	.	.
Chr5	3018742	3020248	AT5TE10990	.	-	ATREP3	Helitron	RC	1506	short	1439	high	8174290	chromoarm	516	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	3020248	3020426	AT5TE10995	.	-	ATREP3	Helitron	RC	178	short	1439	high	8174112	chromoarm	1714	no-CHH	RDR6-RdDM	.	.	.	.	.
Chr5	3031410	3031991	AT5TE11030	.	-	HELITRON2	Helitron	RC	581	short	194	medium	8162547	chromoarm	454	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	3051271	3051582	AT5TE11100	.	+	HELITRON4	Helitron	RC	311	short	199	medium	8142956	chromoarm	1226	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	3084692	3084786	AT5TE11220	.	+	ATDNAI27T9A	MuDR	DNA	94	tiny	116	medium	8109752	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	3084786	3085153	AT5TE11225	.	+	VANDAL17	MuDR	DNA	367	short	178	medium	8109385	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	3110443	3110500	AT5TE11310	.	-	HELITRONY1B	Helitron	RC	57	tiny	414	high	8084038	chromoarm	1740	no-CHH	no-CHH	.	.	.	.	.
Chr5	3110500	3111423	AT5TE11315	.	+	ATREP10D	Helitron	RC	923	short	1295	high	8083115	chromoarm	817	no-CHH	no-CHH	.	.	.	.	.
Chr5	3114037	3114080	AT5TE11320	.	-	HELITRONY1D	Helitron	RC	43	tiny	756	high	8080458	chromoarm	50	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	3114080	3114282	AT5TE11325	.	-	ATREP5	Helitron	RC	202	short	624	high	8080256	chromoarm	93	no-CHH	no-CHH	.	.	.	.	.
Chr5	3114282	3116667	AT5TE11330	.	-	ATREP5	Helitron	RC	2385	medium	624	high	8077871	chromoarm	295	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	3116667	3116811	AT5TE11335	.	-	HELITRONY1A	Helitron	RC	144	short	271	high	8077727	chromoarm	2301	no-CHH	no-CHH	.	.	.	.	.
Chr5	3198000	3199012	AT5TE11630	.	+	ATREP10B	Helitron	RC	1012	short	491	high	7995526	chromoarm	192	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	3208866	3209723	AT5TE11670	.	-	HELITRONY3	Helitron	RC	857	short	1399	high	7984815	chromoarm	14	no-CHH	no-CHH	.	.	.	.	.
Chr5	3234757	3235170	AT5TE11760	.	-	HELITRONY1D	Helitron	RC	413	short	756	high	7959368	chromoarm	291	no-CHH	no-CHH	.	.	.	.	.
Chr5	3242195	3242404	AT5TE11790	.	+	ATDNAI27T9C	MuDR	DNA	209	short	108	medium	7952134	chromoarm	68	no-CHH	no-CHH	.	.	.	.	.
Chr5	3250290	3250317	AT5TE11820	.	+	ATGP9LTR	Gypsy	LTR	27	tiny	10	low	7944221	chromoarm	432	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	3250317	3250709	AT5TE11825	.	+	ATGP9LTR	Gypsy	LTR	392	short	10	low	7943829	chromoarm	459	no-CHH	no-CHH	ExpressedAndAnnotated	3250265	3250706	+	transcript_id-"5a5c3ffa-63ac-428d-b1d7-aa1985dcc05f|7"
Chr5	3250941	3250980	AT5TE11830	.	-	ATGP9LTR	Gypsy	LTR	40	tiny	10	low	7943558	chromoarm	962	.	.	LowExpressed	.	.	.	.
Chr5	3253481	3253614	AT5TE11835	.	+	VANDAL18NA	MuDR	DNA	133	short	24	low	7940924	chromoarm	0	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	3253614	3253641	AT5TE11840	.	+	VANDAL18NA	MuDR	DNA	27	tiny	24	low	7940897	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	3260255	3261153	AT5TE11860	.	-	HELITRONY3	Helitron	RC	898	short	1399	high	7933385	chromoarm	91	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	3261153	3261199	AT5TE11865	.	+	HELITRONY3	Helitron	RC	46	tiny	1399	high	7933339	chromoarm	45	no-CHH	no-CHH	.	.	.	.	.
Chr5	3277945	3278160	AT5TE11920	.	+	ATGP1	Gypsy	LTR	215	short	144	medium	7916378	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	3282555	3283269	AT5TE11930	.	-	HELITRONY1D	Helitron	RC	714	short	756	high	7911269	chromoarm	213	no-CHH	no-CHH	.	.	.	.	.
Chr5	3350646	3351098	AT5TE12180	.	+	BRODYAGA1	MuDR	DNA	452	short	251	high	7843440	chromoarm	128	no-CHH	no-CHH	.	.	.	.	.
Chr5	3368408	3368480	AT5TE12240	.	+	BRODYAGA2	MuDR	DNA	72	tiny	525	high	7826058	chromoarm	1145	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	3372195	3373187	AT5TE12250	.	-	VANDAL22	MuDR	DNA	992	short	48	low	7821351	chromoarm	0	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	3428204	3428716	AT5TE12450	.	+	ATLINE1_1	L1	LINE	512	short	61	medium	7765822	chromoarm	407	no-CHH	no-CHH	ExpressedAndAnnotated	3428154,3428177	3428824,3428883	+,+	transcript_id-"151e5999-59fc-40e3-a11e-3189e6f6d995|4",transcript_id-"63fe3d8b-020f-40d6-be8e-2b6582d7c8d1|3"
Chr5	3428716	3428750	AT5TE12455	.	+	ATLINE1_2	L1	LINE	34	tiny	41	low	7765788	chromoarm	422	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	3501656	3502078	AT5TE12720	.	-	ATREP10C	Helitron	RC	422	short	123	medium	7692460	chromoarm	65	no-CHH	no-CHH	.	.	.	.	.
Chr5	3523551	3524234	AT5TE12800	.	+	ATREP11	Helitron	RC	683	short	841	high	7670304	chromoarm	561	no-CHH	no-CHH	.	.	.	.	.
Chr5	3561044	3561277	AT5TE12940	.	+	BRODYAGA1A	MuDR	DNA	233	short	586	high	7633261	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	3566114	3566344	AT5TE12950	.	+	ATREP2A	Helitron	RC	230	short	116	medium	7628194	chromoarm	63	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	3566344	3566975	AT5TE12955	.	+	ATREP2	Helitron	RC	631	short	164	medium	7627563	chromoarm	293	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	3575910	3576832	AT5TE12980	.	-	ARNOLDY2	MuDR	DNA	922	short	288	high	7617706	chromoarm	224	no-CHH	no-CHH	.	.	.	.	.
Chr5	3596319	3596491	AT5TE13050	.	-	ATMU5	MuDR	DNA	172	short	24	low	7598047	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	3605549	3606291	AT5TE13080	.	-	ATREP10D	Helitron	RC	742	short	1295	high	7588247	chromoarm	198	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	3606291	3606405	AT5TE13085	.	+	BRODYAGA1A	MuDR	DNA	114	short	586	high	7588133	chromoarm	84	no-CHH	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	3628075	3628297	AT5TE13160	.	-	ATLINEIII	L1	LINE	222	short	196	medium	7566241	chromoarm	0	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	3640947	3641246	AT5TE13210	.	+	ATTIRX1B	.	DNA	299	short	44	low	7553292	chromoarm	71	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	3688581	3688773	AT5TE13390	.	-	TA11	L1	LINE	192	short	157	medium	7505765	chromoarm	860	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	3689708	3689888	AT5TE13395	.	+	HELITRONY1E	Helitron	RC	180	short	447	high	7504650	chromoarm	1987	no-CHH	no-CHH	.	.	.	.	.
Chr5	3689888	3690782	AT5TE13400	.	-	HELITRONY3	Helitron	RC	894	short	1399	high	7503756	chromoarm	2167	no-CHH	no-CHH	.	.	.	.	.
Chr5	3690934	3691815	AT5TE13405	.	-	ATREP15	Helitron	RC	881	short	1003	high	7502723	chromoarm	3213	no-CHH	no-CHH	.	.	.	.	.
Chr5	3701186	3701295	AT5TE13430	.	+	ATCOPIA59	Copia	LTR	109	short	20	low	7493243	chromoarm	256	no-CHH	no-CHH	.	.	.	.	.
Chr5	3722185	3722585	AT5TE13510	.	-	HELITRONY3	Helitron	RC	400	short	1399	high	7471953	chromoarm	1060	no-CHH	no-CHH	.	.	.	.	.
Chr5	3730126	3730965	AT5TE13540	.	-	ATREP5	Helitron	RC	839	short	624	high	7463573	chromoarm	1627	no-CHH	no-CHH	.	.	.	.	.
Chr5	3748276	3748957	AT5TE13600	.	+	BRODYAGA2	MuDR	DNA	681	short	525	high	7445581	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	3750497	3751194	AT5TE13605	.	+	ATHATN2	HAT	DNA	697	short	46	low	7443344	chromoarm	180	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	3751200	3751239	AT5TE13610	.	-	ATREP10	Helitron	RC	39	tiny	63	medium	7443299	chromoarm	883	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	3761022	3761231	AT5TE13650	.	+	VANDAL7	MuDR	DNA	209	short	36	low	7433307	chromoarm	388	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	3796717	3796834	AT5TE13780	.	-	ATTIRX1A	.	DNA	117	short	63	medium	7397704	chromoarm	734	no-CHH	no-CHH	.	.	.	.	.
Chr5	3802699	3802851	AT5TE13800	.	+	ATMU2	MuDR	DNA	152	short	64	medium	7391687	chromoarm	203	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	3802890	3803134	AT5TE13805	.	-	ATMU2	MuDR	DNA	244	short	64	medium	7391404	chromoarm	394	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	3847171	3847499	AT5TE13960	.	+	ATDNA2T9C	MuDR	DNA	328	short	242	high	7347039	chromoarm	1560	no-CHH	no-CHH	.	.	.	.	.
Chr5	3847786	3848491	AT5TE13965	.	+	ATREP5	Helitron	RC	705	short	624	high	7346047	chromoarm	791	no-CHH	no-CHH	.	.	.	.	.
Chr5	3853049	3853307	AT5TE13975	.	+	BRODYAGA1A	MuDR	DNA	258	short	586	high	7341231	chromoarm	632	no-CHH	no-CHH	.	.	.	.	.
Chr5	3895557	3896437	AT5TE14130	.	+	META1	Copia	LTR	880	short	138	medium	7298101	chromoarm	186	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	3895817	3896030	AT5TE14135	.	+	ATLINE1A	L1	LINE	213	short	289	high	7298508	chromoarm	446	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	3902530	3903099	AT5TE14150	.	-	ATREP10D	Helitron	RC	569	short	1295	high	7291439	chromoarm	1607	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr5	3903106	3904246	AT5TE14155	.	+	ATREP6	Helitron	RC	1140	short	181	medium	7290292	chromoarm	2183	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	3904246	3904335	AT5TE14160	.	+	ATREP6	Helitron	RC	89	tiny	181	medium	7290203	chromoarm	3323	PolIV-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	3904620	3909856	AT5TE14165	.	-	ATGP3	Gypsy	LTR	5236	long	60	medium	7284682	chromoarm	0	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	3944942	3947148	AT5TE14290	.	+	AT9TSD1	MuDR	DNA	2206	medium	55	medium	7247390	chromoarm	105	PolIV-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	3946872	3946085	-	transcript_id-"426f35fe-72ca-4252-a331-573cf8978027|4"
Chr5	3960294	3960506	AT5TE14340	.	-	HARBINGER	Harbinger	DNA	212	short	90	medium	7234032	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	3965397	3965422	AT5TE14350	.	-	HELITRONY3	Helitron	RC	25	tiny	1399	high	7229116	chromoarm	994	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	3965422	3966315	AT5TE14355	.	-	ATTIR16T3A	.	DNA	893	short	106	medium	7228223	chromoarm	101	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	3965704	3965967	AT5TE14360	.	-	ATREP9	Helitron	RC	263	short	201	high	7228571	chromoarm	449	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	3966316	3966339	AT5TE14365	.	-	ATTIR16T3A	.	DNA	24	tiny	106	medium	7228199	chromoarm	77	.	.	.	.	.	.	.
Chr5	3966339	3966360	AT5TE14370	.	-	HELITRONY3	Helitron	RC	21	tiny	1399	high	7228178	chromoarm	56	no-CHH	no-CHH	.	.	.	.	.
Chr5	3972219	3972352	AT5TE14390	.	-	ATIS112A	Harbinger	DNA	133	short	173	medium	7222186	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	3994515	3995317	AT5TE14470	.	-	ATREP7	Helitron	RC	802	short	164	medium	7199221	chromoarm	471	no-CHH	no-CHH	.	.	.	.	.
Chr5	4012966	4013423	AT5TE14540	.	+	BRODYAGA1A	MuDR	DNA	457	short	586	high	7181115	chromoarm	389	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	4022806	4023204	AT5TE14570	.	+	VANDAL17	MuDR	DNA	398	short	178	medium	7171334	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	4074066	4074120	AT5TE14760	.	-	HARBINGER	Harbinger	DNA	54	tiny	90	medium	7120418	chromoarm	0	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	4074479	4074622	AT5TE14765	.	+	ATDNAI27T9C	MuDR	DNA	143	short	108	medium	7119916	chromoarm	34	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	4090486	4090565	AT5TE14820	.	+	ATCOPIA28	Copia	LTR	79	tiny	81	medium	7103973	chromoarm	1589	no-CHH	no-CHH	.	.	.	.	.
Chr5	4097251	4097491	AT5TE14840	.	+	ATTIR16T3A	.	DNA	240	short	106	medium	7097047	chromoarm	296	no-CHH	no-CHH	.	.	.	.	.
Chr5	4097491	4097529	AT5TE14845	.	+	ATTIR16T3A	.	DNA	38	tiny	106	medium	7097009	chromoarm	258	no-CHH	RDR6-RdDM	.	.	.	.	.
Chr5	4165134	4165590	AT5TE15090	.	+	ATREP5	Helitron	RC	456	short	624	high	7028948	chromoarm	414	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	4166042	4166504	AT5TE15095	.	+	ATIS112A	Harbinger	DNA	462	short	173	medium	7028034	chromoarm	250	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	4192208	4192797	AT5TE15190	.	-	ATREP11	Helitron	RC	589	short	841	high	7001741	chromoarm	3845	no-CHH	no-CHH	.	.	.	.	.
Chr5	4200963	4201363	AT5TE15220	.	+	BRODYAGA1A	MuDR	DNA	400	short	586	high	6993175	chromoarm	1980	no-CHH	no-CHH	.	.	.	.	.
Chr5	4208082	4213084	AT5TE15240	.	-	ATCOPIA78	Copia	LTR	5002	long	24	low	6981454	chromoarm	3	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	4213506	4213631	AT5TE15245	.	-	ATREP4	Helitron	RC	125	short	832	high	6980907	chromoarm	935	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	4213631	4214201	AT5TE15250	.	-	HELITRONY3	Helitron	RC	570	short	1399	high	6980337	chromoarm	365	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	4239582	4239631	AT5TE15340	.	-	ATREP11A	Helitron	RC	49	tiny	95	medium	6954907	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	4239631	4240050	AT5TE15345	.	-	BRODYAGA2	MuDR	DNA	419	short	525	high	6954488	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	4240225	4240287	AT5TE15350	.	+	VANDAL13	MuDR	DNA	62	tiny	38	low	6954251	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	4266227	4266680	AT5TE15450	.	+	ATREP5	Helitron	RC	453	short	624	high	6927858	chromoarm	1238	no-CHH	no-CHH	.	.	.	.	.
Chr5	4271547	4271813	AT5TE15460	.	+	ATREP3	Helitron	RC	266	short	1439	high	6922725	chromoarm	570	no-CHH	no-CHH	.	.	.	.	.
Chr5	4282638	4283272	AT5TE15500	.	-	HELITRONY1D	Helitron	RC	634	short	756	high	6911266	chromoarm	215	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	4312072	4315615	AT5TE15610	.	-	ATREP3	Helitron	RC	3543	medium	1439	high	6878923	chromoarm	131	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	4323652	4325097	AT5TE15640	.	+	ATLINE2	L1	LINE	1445	short	138	medium	6869441	chromoarm	1540	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	4325598	4325674	AT5TE15645	.	+	ATLINEIII	L1	LINE	76	tiny	196	medium	6868864	chromoarm	963	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr5	4333262	4334708	AT5TE15670	.	-	ATLINE2	L1	LINE	1446	short	138	medium	6859830	chromoarm	1325	no-CHH	no-CHH	.	.	.	.	.
Chr5	4366445	4367216	AT5TE15790	.	-	ATREP4	Helitron	RC	771	short	832	high	6827322	chromoarm	127	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	4379654	4379698	AT5TE15840	.	-	ATLINE1A	L1	LINE	44	tiny	289	high	6814840	chromoarm	733	no-CHH	no-CHH	.	.	.	.	.
Chr5	4386922	4387148	AT5TE15870	.	-	ATCOPIA32B	Copia	LTR	226	short	10	low	6807390	chromoarm	418	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	4392723	4393019	AT5TE15890	.	+	ATREP5	Helitron	RC	296	short	624	high	6801519	chromoarm	509	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	4403117	4404371	AT5TE15930	.	+	ATLINE2	L1	LINE	1254	short	138	medium	6790167	chromoarm	722	no-CHH	no-CHH	.	.	.	.	.
Chr5	4404371	4404558	AT5TE15935	.	-	ATREP1	Helitron	RC	187	short	498	high	6789980	chromoarm	535	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	4465994	4466074	AT5TE16160	.	-	ATREP3	Helitron	RC	80	tiny	1439	high	6728464	chromoarm	25	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	4466074	4466099	AT5TE16165	.	-	ATREP11	Helitron	RC	25	tiny	841	high	6728439	chromoarm	105	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	4466099	4467305	AT5TE16170	.	+	ATREP15	Helitron	RC	1206	short	1003	high	6727233	chromoarm	57	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	4466638	4466957	AT5TE16175	.	-	ATTIRX1D	.	DNA	319	short	28	low	6727581	chromoarm	405	no-CHH	no-CHH	.	.	.	.	.
Chr5	4471043	4471098	AT5TE16185	.	+	ATLINEIII	L1	LINE	55	tiny	196	medium	6723440	chromoarm	262	no-CHH	no-CHH	.	.	.	.	.
Chr5	4495214	4495735	AT5TE16270	.	+	TA1_AT	Gypsy	LTR	521	short	3	low	6698803	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	4518287	4518402	AT5TE16350	.	-	ATDNAI27T9C	MuDR	DNA	115	short	108	medium	6676136	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	4521164	4521311	AT5TE16360	.	-	HARBINGER	Harbinger	DNA	147	short	90	medium	6673227	chromoarm	948	no-CHH	no-CHH	.	.	.	.	.
Chr5	4530469	4530525	AT5TE16390	.	+	ATLINEIII	L1	LINE	56	tiny	196	medium	6664013	chromoarm	533	no-CHH	no-CHH	.	.	.	.	.
Chr5	4539582	4539998	AT5TE16420	.	+	ATREP10D	Helitron	RC	416	short	1295	high	6654540	chromoarm	589	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	4552711	4552838	AT5TE16470	.	+	ATDNAI27T9C	MuDR	DNA	127	short	108	medium	6641700	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	4561191	4561364	AT5TE16500	.	+	RathE3_cons	.	RathE3_cons	173	short	104	medium	6633174	chromoarm	174	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	4564063	4564299	AT5TE16510	.	+	ATLINE2	L1	LINE	236	short	138	medium	6630239	chromoarm	550	no-CHH	no-CHH	.	.	.	.	.
Chr5	4635064	4635117	AT5TE16770	.	-	HELITRONY1D	Helitron	RC	53	tiny	756	high	6559421	chromoarm	970	no-CHH	no-CHH	.	.	.	.	.
Chr5	4635117	4636052	AT5TE16775	.	+	ATREP4	Helitron	RC	935	short	832	high	6558486	chromoarm	35	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	4640356	4640762	AT5TE16785	.	-	ATREP11	Helitron	RC	406	short	841	high	6553776	chromoarm	781	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	4640762	4642974	AT5TE16790	.	+	ATREP11	Helitron	RC	2212	medium	841	high	6551564	chromoarm	1153	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	4642974	4643166	AT5TE16795	.	-	ATREP11	Helitron	RC	192	short	841	high	6551372	chromoarm	961	no-CHH	no-CHH	.	.	.	.	.
Chr5	4656743	4656942	AT5TE16840	.	+	VANDAL8	MuDR	DNA	199	short	123	medium	6537596	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	4669953	4670058	AT5TE16890	.	-	ATDNAI27T9C	MuDR	DNA	105	short	108	medium	6524480	chromoarm	260	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	4679686	4680222	AT5TE16930	.	-	ATREP10D	Helitron	RC	536	short	1295	high	6514316	chromoarm	492	no-CHH	no-CHH	.	.	.	.	.
Chr5	4736683	4736712	AT5TE17140	.	-	HELITRONY1B	Helitron	RC	29	tiny	414	high	6457826	chromoarm	2168	no-CHH	no-CHH	.	.	.	.	.
Chr5	4736712	4738309	AT5TE17145	.	-	ATREP11	Helitron	RC	1597	short	841	high	6456229	chromoarm	2192	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	4738309	4739198	AT5TE17150	.	-	ATREP6	Helitron	RC	889	short	181	medium	6455340	chromoarm	1303	no-CHH	no-CHH	.	.	.	.	.
Chr5	4759894	4760078	AT5TE17230	.	-	BRODYAGA1	MuDR	DNA	184	short	251	high	6434460	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	4760078	4760403	AT5TE17235	.	-	BRODYAGA1A	MuDR	DNA	325	short	586	high	6434135	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	4779933	4782307	AT5TE17300	.	-	ATREP3	Helitron	RC	2374	medium	1439	high	6412231	chromoarm	743	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	4782307	4782342	AT5TE17305	.	-	ATREP15	Helitron	RC	35	tiny	1003	high	6412196	chromoarm	1715	no-CHH	no-CHH	.	.	.	.	.
Chr5	4782342	4782777	AT5TE17310	.	-	ATREP5	Helitron	RC	435	short	624	high	6411761	chromoarm	1280	no-CHH	no-CHH	.	.	.	.	.
Chr5	4787659	4787763	AT5TE17320	.	-	TAT1_ATH	Gypsy	LTR	104	short	87	medium	6406775	chromoarm	41	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	4788494	4791460	AT5TE17325	.	+	ATGP9B	Gypsy	LTR	2966	medium	27	low	6403078	chromoarm	611	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	4791468	4791580	AT5TE17330	.	-	ATGP3	Gypsy	LTR	112	short	60	medium	6402958	chromoarm	491	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	4794066	4794416	AT5TE17335	.	+	VANDAL16	MuDR	DNA	350	short	42	low	6400122	chromoarm	198	no-CHH	no-CHH	.	.	.	.	.
Chr5	4794416	4794504	AT5TE17340	.	-	ATLANTYS3	Gypsy	LTR	88	tiny	142	medium	6400034	chromoarm	548	no-CHH	no-CHH	.	.	.	.	.
Chr5	4794504	4796567	AT5TE17345	.	-	ATLANTYS3	Gypsy	LTR	2063	medium	142	medium	6397971	chromoarm	636	no-CHH	no-CHH	.	.	.	.	.
Chr5	4799157	4799906	AT5TE17350	.	-	ATGP9B	Gypsy	LTR	749	short	27	low	6394632	chromoarm	2192	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	4799959	4800000	AT5TE17355	.	+	VANDAL6	MuDR	DNA	41	tiny	89	medium	6394538	chromoarm	2098	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	4800182	4800267	AT5TE17360	.	-	ATLANTYS3	Gypsy	LTR	85	tiny	142	medium	6394271	chromoarm	1831	no-CHH	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	4800410	4800648	AT5TE17365	.	-	TAT1_ATH	Gypsy	LTR	238	short	87	medium	6393890	chromoarm	1450	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	4894811	4895356	AT5TE17710	.	+	ATREP3	Helitron	RC	545	short	1439	high	6299182	chromoarm	609	no-CHH	no-CHH	.	.	.	.	.
Chr5	4901172	4901197	AT5TE17730	.	+	ATREP3	Helitron	RC	25	tiny	1439	high	6293341	chromoarm	821	no-CHH	no-CHH	.	.	.	.	.
Chr5	4901197	4902250	AT5TE17735	.	+	HELITRONY3	Helitron	RC	1053	short	1399	high	6292288	chromoarm	846	no-CHH	no-CHH	.	.	.	.	.
Chr5	4909158	4909190	AT5TE17760	.	+	ATHAT1	HAT	DNA	32	tiny	105	medium	6285348	chromoarm	0	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	4917869	4918026	AT5TE17790	.	+	ATDNA12T3_2	.	DNA	157	short	660	high	6276512	chromoarm	2260	no-CHH	no-CHH	.	.	.	.	.
Chr5	4920664	4921403	AT5TE17795	.	+	ATREP10D	Helitron	RC	739	short	1295	high	6273135	chromoarm	83	no-CHH	no-CHH	.	.	.	.	.
Chr5	4922828	4923532	AT5TE17800	.	-	BRODYAGA2	MuDR	DNA	704	short	525	high	6271006	chromoarm	275	no-CHH	no-CHH	.	.	.	.	.
Chr5	4932288	4932684	AT5TE17830	.	+	HELITRONY3	Helitron	RC	396	short	1399	high	6261854	chromoarm	77	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	4936862	4937774	AT5TE17840	.	+	ATREP3	Helitron	RC	912	short	1439	high	6256764	chromoarm	99	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	4936962	4937566	AT5TE17845	.	+	ATREP2	Helitron	RC	604	short	164	medium	6256972	chromoarm	307	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	4957622	4958318	AT5TE17910	.	-	BRODYAGA2	MuDR	DNA	696	short	525	high	6236220	chromoarm	271	no-CHH	no-CHH	.	.	.	.	.
Chr5	4958318	4958346	AT5TE17915	.	-	HELITRONY1D	Helitron	RC	28	tiny	756	high	6236192	chromoarm	391	no-CHH	no-CHH	.	.	.	.	.
Chr5	4970139	4970259	AT5TE17950	.	+	ATREP11A	Helitron	RC	120	short	95	medium	6224279	chromoarm	109	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	4970259	4971020	AT5TE17955	.	+	ATREP11	Helitron	RC	761	short	841	high	6223518	chromoarm	229	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	4971020	4971092	AT5TE17960	.	+	ATREP11A	Helitron	RC	72	tiny	95	medium	6223446	chromoarm	990	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	4971092	4971114	AT5TE17965	.	+	HELITRONY1B	Helitron	RC	22	tiny	414	high	6223424	chromoarm	1062	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	5007085	5007483	AT5TE18090	.	-	ATREP9	Helitron	RC	398	short	201	high	6187055	chromoarm	322	no-CHH	no-CHH	.	.	.	.	.
Chr5	5041056	5041327	AT5TE18210	.	-	TAT1_ATH	Gypsy	LTR	271	short	87	medium	6153211	chromoarm	619	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	5041358	5041423	AT5TE18215	.	-	TAT1_ATH	Gypsy	LTR	65	tiny	87	medium	6153115	chromoarm	921	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	5062371	5063662	AT5TE18290	.	-	ATREP10	Helitron	RC	1291	short	63	medium	6130876	chromoarm	368	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	5063662	5063721	AT5TE18295	.	-	ATREP10A	Helitron	RC	59	tiny	279	high	6130817	chromoarm	329	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	5091302	5092053	AT5TE18390	.	-	BRODYAGA2	MuDR	DNA	751	short	525	high	6102485	chromoarm	149	no-CHH	no-CHH	.	.	.	.	.
Chr5	5098687	5098920	AT5TE18410	.	-	ATTIR16T3A	.	DNA	233	short	106	medium	6095618	chromoarm	674	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	5098920	5099104	AT5TE18415	.	-	ARNOLDY1	MuDR	DNA	184	short	237	high	6095434	chromoarm	490	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	5111363	5111593	AT5TE18460	.	-	BRODYAGA2	MuDR	DNA	230	short	525	high	6082945	chromoarm	570	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	5111926	5112295	AT5TE18465	.	-	ATENSPM6	En-Spm	DNA	369	short	151	medium	6082243	chromoarm	1133	PolIV-and-RDR6-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	5112920	5113135	AT5TE18470	.	+	ATMU10	MuDR	DNA	215	short	87	medium	6081403	chromoarm	687	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	5113977	5114330	AT5TE18475	.	-	VANDAL12	MuDR	DNA	353	short	37	low	6080208	chromoarm	0	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	5114541	5114771	AT5TE18480	.	+	BRODYAGA2	MuDR	DNA	231	short	525	high	6079767	chromoarm	138	.	.	LowExpressed	.	.	.	.
Chr5	5128228	5128857	AT5TE18530	.	-	HELITRONY1D	Helitron	RC	629	short	756	high	6065681	chromoarm	7	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	5128858	5129030	AT5TE18535	.	+	ATHATN7	HAT	DNA	173	short	71	medium	6065508	chromoarm	636	.	.	.	.	.	.	.
Chr5	5129030	5129290	AT5TE18540	.	-	ATREP3	Helitron	RC	260	short	1439	high	6065248	chromoarm	809	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	5129290	5130407	AT5TE18545	.	-	ATREP3	Helitron	RC	1117	short	1439	high	6064131	chromoarm	876	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	5130407	5130485	AT5TE18550	.	+	ATREP11	Helitron	RC	78	tiny	841	high	6064053	chromoarm	798	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	5138012	5138057	AT5TE18580	.	+	ATREP10D	Helitron	RC	45	tiny	1295	high	6056481	chromoarm	1056	no-CHH	no-CHH	.	.	.	.	.
Chr5	5138057	5139424	AT5TE18585	.	-	HELITRONY1B	Helitron	RC	1367	short	414	high	6055114	chromoarm	1101	no-CHH	no-CHH	.	.	.	.	.
Chr5	5139424	5139464	AT5TE18590	.	+	ATREP15	Helitron	RC	40	tiny	1003	high	6055074	chromoarm	1984	no-CHH	no-CHH	.	.	.	.	.
Chr5	5147491	5147956	AT5TE18620	.	-	ATREP3	Helitron	RC	465	short	1439	high	6046582	chromoarm	1194	no-CHH	no-CHH	.	.	.	.	.
Chr5	5147956	5148667	AT5TE18625	.	-	ATREP15	Helitron	RC	711	short	1003	high	6045871	chromoarm	1132	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	5217346	5217512	AT5TE18880	.	+	ATREP16	MuDR	DNA	166	short	47	low	5977026	chromoarm	2050	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	5217639	5218293	AT5TE18885	.	+	VANDAL12	MuDR	DNA	654	short	37	low	5976245	chromoarm	2343	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	5217625,5217627,5217643	5218360,5218373,5218370	+,+,+	transcript_id-"aa58fb96-84a0-452f-8bf7-b47b3ca04ed5|6",transcript_id-"9526495f-ca00-45bf-9d69-64c32ea74d02|64",transcript_id-"7544adcd-f6ee-4c60-ae7e-a656712e3c15|7"
Chr5	5218879	5218899	AT5TE18890	.	-	ATMU6	MuDR	DNA	20	tiny	26	low	5975639	chromoarm	3583	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	5218899	5220422	AT5TE18895	.	-	ATMU11	MuDR	DNA	1523	short	20	low	5974116	chromoarm	3603	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	5220987	5218459	-	transcript_id-"78a7aa3d-0fd1-40b0-9a7e-69556a22e456|3"
Chr5	5220439	5220935	AT5TE18900	.	-	ATMU4	MuDR	DNA	496	short	14	low	5973603	chromoarm	3328	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	5220987	5218459	-	transcript_id-"78a7aa3d-0fd1-40b0-9a7e-69556a22e456|3"
Chr5	5220935	5221258	AT5TE18905	.	+	ATREP16	MuDR	DNA	323	short	47	low	5973280	chromoarm	3005	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	5229099	5229191	AT5TE18930	.	-	ATTIRX1D	.	DNA	92	tiny	28	low	5965347	chromoarm	87	no-CHH	no-CHH	.	.	.	.	.
Chr5	5239267	5239598	AT5TE18970	.	+	HELITRONY1D	Helitron	RC	331	short	756	high	5954940	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	5240254	5240470	AT5TE18975	.	-	VANDAL8	MuDR	DNA	216	short	123	medium	5954068	chromoarm	0	no-CHH	no-CHH	ExpressedAndAnnotated	5240293	5240430	+	transcript_id-"2e6a15fe-3fa6-43e3-b790-2eeea4d4adf2|4"
Chr5	5240470	5240498	AT5TE18980	.	-	ARNOLD2	MuDR	DNA	28	tiny	68	medium	5954040	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	5262547	5262651	AT5TE19060	.	+	LIMPET1	MuDR	DNA	104	short	116	medium	5931887	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	5264554	5265031	AT5TE19065	.	-	HELITRON4	Helitron	RC	477	short	199	medium	5929507	chromoarm	788	no-CHH	no-CHH	.	.	.	.	.
Chr5	5277865	5277963	AT5TE19110	.	-	ATCOPIA59	Copia	LTR	98	tiny	20	low	5916575	chromoarm	0	DCL3-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	5350956	5352117	AT5TE19380	.	-	ATREP10D	Helitron	RC	1161	short	1295	high	5842421	chromoarm	49	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	5370925	5370967	AT5TE19450	.	-	HELITRONY1D	Helitron	RC	42	tiny	756	high	5823571	chromoarm	318	no-CHH	no-CHH	.	.	.	.	.
Chr5	5370967	5371753	AT5TE19455	.	+	HELITRONY1D	Helitron	RC	786	short	756	high	5822785	chromoarm	11	no-CHH	no-CHH	.	.	.	.	.
Chr5	5371753	5371817	AT5TE19460	.	+	ATREP10B	Helitron	RC	64	tiny	491	high	5822721	chromoarm	0	no-CHH	no-RdDM	.	.	.	.	.
Chr5	5375917	5376523	AT5TE19470	.	-	HELITRONY3	Helitron	RC	606	short	1399	high	5818015	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	5376523	5376597	AT5TE19475	.	-	ATTIRX1A	.	DNA	74	tiny	63	medium	5817941	chromoarm	487	no-CHH	no-CHH	.	.	.	.	.
Chr5	5380331	5380400	AT5TE19485	.	+	ATIS112A	Harbinger	DNA	69	tiny	173	medium	5814138	chromoarm	501	no-CHH	no-CHH	.	.	.	.	.
Chr5	5380449	5380836	AT5TE19490	.	+	ATIS112A	Harbinger	DNA	387	short	173	medium	5813702	chromoarm	497	no-CHH	no-CHH	.	.	.	.	.
Chr5	5390005	5392383	AT5TE19520	.	+	Unassigned	.	Unassigned	2378	medium	.	low	5802155	chromoarm	912	no-CHH	no-CHH	ExpressedAndAnnotated	5390021	5392380	+	transcript_id-"83efa153-bf0d-4e24-9e97-432ddd7fede8|24"
Chr5	5397387	5397527	AT5TE19530	.	-	ATDNAI27T9A	MuDR	DNA	140	short	116	medium	5797011	chromoarm	16	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	5414407	5415280	AT5TE19590	.	+	META1	Copia	LTR	873	short	138	medium	5779258	chromoarm	3315	no-CHH	no-CHH	.	.	.	.	.
Chr5	5427617	5427779	AT5TE19640	.	-	ATREP10D	Helitron	RC	162	short	1295	high	5766759	chromoarm	145	no-CHH	no-CHH	.	.	.	.	.
Chr5	5427783	5430092	AT5TE19645	.	-	ATREP3	Helitron	RC	2309	medium	1439	high	5764446	chromoarm	311	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	5430092	5430192	AT5TE19650	.	+	HELITRONY1E	Helitron	RC	100	short	447	high	5764346	chromoarm	1669	no-CHH	no-CHH	.	.	.	.	.
Chr5	5430192	5430401	AT5TE19655	.	-	ATREP9	Helitron	RC	209	short	201	high	5764137	chromoarm	1460	no-CHH	no-CHH	.	.	.	.	.
Chr5	5441666	5443151	AT5TE19690	.	-	HELITRONY1C	Helitron	RC	1485	short	120	medium	5751387	chromoarm	1452	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	5443151	5443181	AT5TE19695	.	-	HELITRONY1B	Helitron	RC	30	tiny	414	high	5751357	chromoarm	1886	no-CHH	no-CHH	.	.	.	.	.
Chr5	5443181	5443270	AT5TE19700	.	+	ATREP10A	Helitron	RC	89	tiny	279	high	5751268	chromoarm	1797	no-CHH	no-CHH	.	.	.	.	.
Chr5	5494235	5494310	AT5TE19890	.	-	ATCOPIA59	Copia	LTR	75	tiny	20	low	5700228	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	5521133	5521497	AT5TE19990	.	+	VANDAL17	MuDR	DNA	364	short	178	medium	5673041	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	5567888	5568306	AT5TE20160	.	+	ATREP10B	Helitron	RC	418	short	491	high	5626232	chromoarm	34	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	5578632	5578732	AT5TE20200	.	+	VANDAL1	MuDR	DNA	100	short	80	medium	5615806	chromoarm	469	no-CHH	no-CHH	.	.	.	.	.
Chr5	5584324	5584486	AT5TE20220	.	+	ATGP9B	Gypsy	LTR	162	short	27	low	5610052	chromoarm	475	no-CHH	no-CHH	.	.	.	.	.
Chr5	5592552	5592792	AT5TE20250	.	-	ATREP10D	Helitron	RC	240	short	1295	high	5601746	chromoarm	220	no-CHH	no-CHH	.	.	.	.	.
Chr5	5592792	5593451	AT5TE20255	.	+	ATREP1	Helitron	RC	659	short	498	high	5601087	chromoarm	460	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	5593870	5594588	AT5TE20260	.	+	ATREP10D	Helitron	RC	718	short	1295	high	5599950	chromoarm	315	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	5606260	5606344	AT5TE20300	.	+	ATCOPIA28	Copia	LTR	84	tiny	81	medium	5588194	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	5609844	5609954	AT5TE20310	.	+	ATREP11	Helitron	RC	110	short	841	high	5584584	chromoarm	452	no-CHH	no-CHH	.	.	.	.	.
Chr5	5609954	5610342	AT5TE20315	.	-	ATHATN3	HAT	DNA	388	short	70	medium	5584196	chromoarm	562	no-CHH	no-CHH	.	.	.	.	.
Chr5	5610342	5610543	AT5TE20320	.	-	ATTIRX1B	.	DNA	201	short	44	low	5583995	chromoarm	512	no-CHH	no-CHH	.	.	.	.	.
Chr5	5610543	5610564	AT5TE20325	.	-	ATTIRX1B	.	DNA	21	tiny	44	low	5583974	chromoarm	491	no-CHH	no-CHH	.	.	.	.	.
Chr5	5610564	5610589	AT5TE20330	.	+	HELITRONY1D	Helitron	RC	25	tiny	756	high	5583949	chromoarm	466	no-CHH	no-CHH	.	.	.	.	.
Chr5	5625037	5625059	AT5TE20380	.	+	ATREP2A	Helitron	RC	23	tiny	116	medium	5569479	chromoarm	336	.	.	.	.	.	.	.
Chr5	5625059	5625653	AT5TE20385	.	+	ATREP2	Helitron	RC	594	short	164	medium	5568885	chromoarm	359	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	5629977	5635310	AT5TE20395	.	+	ATCOPIA93	Copia	LTR	5333	long	10	low	5559228	chromoarm	653	no-RdDM	no-CHH	ExpressedAndAnnotated	5630284,5630298,5634283	5632069,5635230,5635162	+,+,+	transcript_id-"6403c932-1513-46e6-b07a-654af74b9571|17",transcript_id-"ccd31b11-8e66-425f-8273-3b42570f9ce2|10",transcript_id-"e51bf286-7ee0-48f3-8f9b-bb758aaa1fb8|3"
Chr5	5644393	5644436	AT5TE20420	.	-	ATLANTYS3	Gypsy	LTR	43	tiny	142	medium	5550102	chromoarm	0	PolIV-and-RDR6-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	5644436	5644702	AT5TE20425	.	+	VANDAL6	MuDR	DNA	266	short	89	medium	5549836	chromoarm	0	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	5644702	5645158	AT5TE20430	.	+	VANDAL6	MuDR	DNA	456	short	89	medium	5549380	chromoarm	0	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	5647806	5647896	AT5TE20435	.	+	VANDAL8	MuDR	DNA	90	tiny	123	medium	5546642	chromoarm	104	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	5647896	5648761	AT5TE20440	.	-	ATREP1	Helitron	RC	865	short	498	high	5545777	chromoarm	194	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	5663006	5664073	AT5TE20490	.	+	HELITRONY1B	Helitron	RC	1067	short	414	high	5530465	chromoarm	86	no-CHH	no-CHH	.	.	.	.	.
Chr5	5695400	5695984	AT5TE20610	.	-	ATREP4	Helitron	RC	584	short	832	high	5498554	chromoarm	970	no-CHH	no-CHH	.	.	.	.	.
Chr5	5701349	5701405	AT5TE20620	.	-	VANDAL22	MuDR	DNA	56	tiny	48	low	5493133	chromoarm	504	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	5701405	5701672	AT5TE20625	.	-	ATREP15	Helitron	RC	267	short	1003	high	5492866	chromoarm	560	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	5701672	5706730	AT5TE20630	.	+	ATREP3	Helitron	RC	5058	long	1439	high	5487808	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	5702963	5703252	AT5TE20635	.	+	ATREP3	Helitron	RC	289	short	1439	high	5491286	chromoarm	127	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	5706730	5706910	AT5TE20645	.	-	BRODYAGA2	MuDR	DNA	180	short	525	high	5487628	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	5707093	5707646	AT5TE20650	.	-	ATREP10D	Helitron	RC	553	short	1295	high	5486892	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	5707646	5707711	AT5TE20655	.	+	HELITRONY3	Helitron	RC	65	tiny	1399	high	5486827	chromoarm	9	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	5707711	5710613	AT5TE20660	.	-	ATREP10D	Helitron	RC	2902	medium	1295	high	5483925	chromoarm	74	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	5717312	5717511	AT5TE20680	.	-	RathE3_cons	.	RathE3_cons	199	short	104	medium	5477027	chromoarm	1094	no-CHH	no-CHH	.	.	.	.	.
Chr5	5761561	5762438	AT5TE20840	.	+	ATREP19	.	DNA	877	short	189	medium	5432100	chromoarm	155	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	5783708	5784419	AT5TE20920	.	+	HELITRONY3	Helitron	RC	711	short	1399	high	5410119	chromoarm	26	no-CHH	no-CHH	.	.	.	.	.
Chr5	5784419	5784482	AT5TE20925	.	-	HELITRONY3	Helitron	RC	63	tiny	1399	high	5410056	chromoarm	737	no-CHH	no-CHH	.	.	.	.	.
Chr5	5784482	5784537	AT5TE20930	.	+	ATREP10B	Helitron	RC	55	tiny	491	high	5410001	chromoarm	800	no-CHH	no-CHH	.	.	.	.	.
Chr5	5785177	5786394	AT5TE20935	.	-	BRODYAGA2	MuDR	DNA	1217	short	525	high	5408144	chromoarm	348	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	5796724	5796933	AT5TE20970	.	-	ATENSPM5	En-Spm	DNA	209	short	111	medium	5397605	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	5801315	5802155	AT5TE20980	.	-	ATREP15	Helitron	RC	840	short	1003	high	5392383	chromoarm	198	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	5813057	5814212	AT5TE21020	.	-	ATREP10D	Helitron	RC	1155	short	1295	high	5380326	chromoarm	628	no-CHH	no-CHH	.	.	.	.	.
Chr5	5829219	5829341	AT5TE21080	.	+	ATMU1	MuDR	DNA	122	short	59	medium	5365197	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	5842618	5843340	AT5TE21130	.	+	ATREP15	Helitron	RC	722	short	1003	high	5351198	chromoarm	979	no-CHH	no-CHH	.	.	.	.	.
Chr5	5843340	5843497	AT5TE21135	.	+	ATREP11	Helitron	RC	157	short	841	high	5351041	chromoarm	1701	no-CHH	no-CHH	.	.	.	.	.
Chr5	5844544	5844763	AT5TE21140	.	+	HELITRONY3	Helitron	RC	219	short	1399	high	5349775	chromoarm	1170	no-CHH	no-CHH	.	.	.	.	.
Chr5	5844763	5845974	AT5TE21145	.	+	ATREP15	Helitron	RC	1211	short	1003	high	5348564	chromoarm	0	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	5849665	5850510	AT5TE21155	.	-	ATLINE1_5	L1	LINE	845	short	91	medium	5344028	chromoarm	1987	no-CHH	no-CHH	.	.	.	.	.
Chr5	5854033	5854204	AT5TE21165	.	+	ATREP6	Helitron	RC	171	short	181	medium	5340334	chromoarm	34	no-CHH	no-CHH	.	.	.	.	.
Chr5	5854204	5855060	AT5TE21170	.	+	ATREP1	Helitron	RC	856	short	498	high	5339478	chromoarm	205	no-CHH	no-CHH	.	.	.	.	.
Chr5	5855060	5855142	AT5TE21175	.	+	HELITRONY1E	Helitron	RC	82	tiny	447	high	5339396	chromoarm	1061	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	5872842	5873616	AT5TE21240	.	-	HELITRONY1E	Helitron	RC	774	short	447	high	5320922	chromoarm	171	no-CHH	no-CHH	.	.	.	.	.
Chr5	5873163	5873528	AT5TE21245	.	-	ATREP5	Helitron	RC	365	short	624	high	5321010	chromoarm	492	no-CHH	no-CHH	.	.	.	.	.
Chr5	5888481	5888862	AT5TE21300	.	-	HELITRONY3	Helitron	RC	381	short	1399	high	5305676	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	5889363	5889882	AT5TE21305	.	-	HELITRONY1B	Helitron	RC	519	short	414	high	5304656	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	5890181	5890823	AT5TE21310	.	-	ATREP10B	Helitron	RC	642	short	491	high	5303715	chromoarm	80	no-CHH	no-CHH	.	.	.	.	.
Chr5	5913966	5914877	AT5TE21400	.	-	ATREP4	Helitron	RC	911	short	832	high	5279661	chromoarm	870	no-CHH	no-CHH	.	.	.	.	.
Chr5	5916194	5916961	AT5TE21405	.	+	ATREP5	Helitron	RC	767	short	624	high	5277577	chromoarm	53	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	5923682	5923846	AT5TE21420	.	+	HELITRON1	Helitron	RC	164	short	130	medium	5270692	chromoarm	522	no-CHH	no-CHH	.	.	.	.	.
Chr5	5924438	5924589	AT5TE21425	.	+	HELITRON1	Helitron	RC	151	short	130	medium	5269949	chromoarm	554	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	5925577	5926048	AT5TE21430	.	+	ATMU10	MuDR	DNA	471	short	87	medium	5268490	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	5969011	5969083	AT5TE21590	.	-	HELITRONY3	Helitron	RC	72	tiny	1399	high	5225455	chromoarm	218	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	5969083	5970674	AT5TE21595	.	+	ARNOLDY1	MuDR	DNA	1591	short	237	high	5223864	chromoarm	290	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	5970674	5970924	AT5TE21600	.	+	HELITRONY3	Helitron	RC	250	short	1399	high	5223614	chromoarm	388	no-CHH	no-CHH	.	.	.	.	.
Chr5	5976412	5976468	AT5TE21620	.	-	ATREP10D	Helitron	RC	56	tiny	1295	high	5218070	chromoarm	110	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	5976468	5976727	AT5TE21625	.	-	HELITRONY3	Helitron	RC	259	short	1399	high	5217811	chromoarm	166	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	5976740	5978115	AT5TE21630	.	-	ATREP3	Helitron	RC	1375	short	1439	high	5216423	chromoarm	438	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	5978115	5978506	AT5TE21635	.	-	ATTIR16T3A	.	DNA	391	short	106	medium	5216032	chromoarm	761	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	6027375	6027396	AT5TE21810	.	-	HELITRONY1E	Helitron	RC	21	tiny	447	high	5167142	chromoarm	344	no-CHH	no-CHH	.	.	.	.	.
Chr5	6027396	6028060	AT5TE21815	.	-	HELITRONY1D	Helitron	RC	664	short	756	high	5166478	chromoarm	365	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	6028060	6028105	AT5TE21820	.	+	ATREP3	Helitron	RC	45	tiny	1439	high	5166433	chromoarm	511	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	6047563	6048763	AT5TE21890	.	-	ATREP10B	Helitron	RC	1200	short	491	high	5145775	chromoarm	2035	no-CHH	no-CHH	.	.	.	.	.
Chr5	6049472	6050102	AT5TE21895	.	-	HELITRONY1D	Helitron	RC	630	short	756	high	5144436	chromoarm	696	no-CHH	no-CHH	.	.	.	.	.
Chr5	6054359	6054854	AT5TE21905	.	-	ATREP3	Helitron	RC	495	short	1439	high	5139684	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	6072550	6073460	AT5TE21970	.	-	ATREP10	Helitron	RC	910	short	63	medium	5121078	chromoarm	352	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	6073460	6073721	AT5TE21975	.	-	ATREP10	Helitron	RC	261	short	63	medium	5120817	chromoarm	347	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	6073721	6073756	AT5TE21980	.	-	ATREP10	Helitron	RC	35	tiny	63	medium	5120782	chromoarm	312	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	6073756	6073797	AT5TE21985	.	+	ATREP10A	Helitron	RC	41	tiny	279	high	5120741	chromoarm	271	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	6073797	6073837	AT5TE21990	.	+	ATREP3	Helitron	RC	40	tiny	1439	high	5120701	chromoarm	231	no-CHH	no-CHH	.	.	.	.	.
Chr5	6109472	6109498	AT5TE22120	.	-	ATREP15	Helitron	RC	26	tiny	1003	high	5085040	chromoarm	135	no-CHH	no-CHH	.	.	.	.	.
Chr5	6109498	6109569	AT5TE22125	.	+	ARNOLDY2	MuDR	DNA	71	tiny	288	high	5084969	chromoarm	161	no-CHH	no-CHH	.	.	.	.	.
Chr5	6109569	6110259	AT5TE22130	.	-	ATREP15	Helitron	RC	690	short	1003	high	5084279	chromoarm	103	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	6117130	6117295	AT5TE22160	.	-	HELITRONY1E	Helitron	RC	165	short	447	high	5077243	chromoarm	110	no-CHH	no-CHH	.	.	.	.	.
Chr5	6117295	6118124	AT5TE22165	.	-	ATHPOGON3	Pogo	DNA	829	short	118	medium	5076414	chromoarm	275	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	6118124	6118485	AT5TE22170	.	+	HELITRONY2	Helitron	RC	361	short	198	medium	5076053	chromoarm	1104	no-CHH	no-CHH	.	.	.	.	.
Chr5	6118485	6118643	AT5TE22175	.	+	HELITRONY3	Helitron	RC	158	short	1399	high	5075895	chromoarm	1465	no-CHH	no-CHH	.	.	.	.	.
Chr5	6144064	6144894	AT5TE22260	.	+	ATREP5	Helitron	RC	830	short	624	high	5049644	chromoarm	132	no-CHH	no-CHH	.	.	.	.	.
Chr5	6155561	6155667	AT5TE22300	.	-	ATMU2	MuDR	DNA	106	short	64	medium	5038871	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	6170862	6170897	AT5TE22360	.	+	BRODYAGA2	MuDR	DNA	35	tiny	525	high	5023641	chromoarm	941	no-CHH	no-CHH	.	.	.	.	.
Chr5	6170897	6171732	AT5TE22365	.	-	HELITRONY1E	Helitron	RC	835	short	447	high	5022806	chromoarm	106	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	6190033	6191266	AT5TE22430	.	+	ATREP10B	Helitron	RC	1233	short	491	high	5003272	chromoarm	1469	no-CHH	no-CHH	.	.	.	.	.
Chr5	6191266	6191287	AT5TE22435	.	-	ATREP10A	Helitron	RC	21	tiny	279	high	5003251	chromoarm	1448	no-CHH	no-CHH	.	.	.	.	.
Chr5	6191403	6191538	AT5TE22440	.	+	ATREP7	Helitron	RC	135	short	164	medium	5003000	chromoarm	1197	no-CHH	no-CHH	.	.	.	.	.
Chr5	6191538	6192415	AT5TE22445	.	-	ATREP7	Helitron	RC	877	short	164	medium	5002123	chromoarm	320	no-CHH	no-CHH	.	.	.	.	.
Chr5	6205869	6206064	AT5TE22490	.	+	TA11	L1	LINE	195	short	157	medium	4988474	chromoarm	421	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	6206509	6206551	AT5TE22495	.	+	TA11	L1	LINE	43	tiny	157	medium	4987987	chromoarm	1060	.	.	.	.	.	.	.
Chr5	6206551	6210347	AT5TE22500	.	+	TA11	L1	LINE	3796	medium	157	medium	4984191	chromoarm	920	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	6210348	6210616	AT5TE22505	.	+	TA11	L1	LINE	269	short	157	medium	4983922	chromoarm	651	.	.	.	.	.	.	.
Chr5	6216963	6217477	AT5TE22520	.	-	ATREP3	Helitron	RC	514	short	1439	high	4977061	chromoarm	782	no-CHH	no-CHH	.	.	.	.	.
Chr5	6234440	6234670	AT5TE22580	.	+	BRODYAGA1A	MuDR	DNA	230	short	586	high	4959868	chromoarm	314	no-CHH	no-CHH	.	.	.	.	.
Chr5	6295765	6295805	AT5TE22810	.	-	ATREP10B	Helitron	RC	40	tiny	491	high	4898733	chromoarm	184	no-CHH	no-CHH	.	.	.	.	.
Chr5	6295805	6295909	AT5TE22815	.	-	HELITRONY1D	Helitron	RC	104	short	756	high	4898629	chromoarm	224	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	6295909	6296660	AT5TE22820	.	+	HELITRON4	Helitron	RC	751	short	199	medium	4897878	chromoarm	328	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	6313849	6313945	AT5TE22880	.	-	ATLINE1A	L1	LINE	96	tiny	289	high	4880593	chromoarm	634	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	6318989	6319783	AT5TE22890	.	+	HELITRONY1D	Helitron	RC	794	short	756	high	4874755	chromoarm	5774	no-CHH	no-CHH	.	.	.	.	.
Chr5	6324017	6324170	AT5TE22900	.	+	ATSINE2A	.	SINE	153	short	33	low	4870368	chromoarm	1801	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	6348989	6351608	AT5TE22990	.	-	ATENSPM2	En-Spm	DNA	2619	medium	114	medium	4842930	chromoarm	1162	no-RdDM	no-RdDM	ExpressedAndAnnotated	6351024,6351024,6351024	6349603,6349613,6349655	-,-,-	transcript_id-"eba10ed3-0727-4a08-9aaf-0b4b2d05d73a|12",transcript_id-"93ef44a1-5e91-4a36-be8e-f51cc9faedc6|11",transcript_id-"cac98f58-dfb5-46b9-bcb5-960bc92186f7|71"
Chr5	6351748	6352090	AT5TE22995	.	+	HELITRONY1D	Helitron	RC	342	short	756	high	4842448	chromoarm	680	no-CHH	no-CHH	.	.	.	.	.
Chr5	6352167	6352572	AT5TE23000	.	-	ATREP1	Helitron	RC	405	short	498	high	4841966	chromoarm	198	no-CHH	no-CHH	.	.	.	.	.
Chr5	6384250	6384305	AT5TE23120	.	-	RP1_AT	.	DNA	55	tiny	87	medium	4810233	chromoarm	3604	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	6384305	6384490	AT5TE23125	.	-	RP1_AT	.	DNA	185	short	87	medium	4810048	chromoarm	3419	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	6387011	6387426	AT5TE23130	.	+	ATREP3	Helitron	RC	415	short	1439	high	4807112	chromoarm	483	no-CHH	no-CHH	.	.	.	.	.
Chr5	6398630	6398673	AT5TE23170	.	-	BRODYAGA2	MuDR	DNA	43	tiny	525	high	4795865	chromoarm	8775	no-CHH	no-CHH	.	.	.	.	.
Chr5	6398673	6399464	AT5TE23175	.	+	ATREP15	Helitron	RC	791	short	1003	high	4795074	chromoarm	8777	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	6403052	6408058	AT5TE23185	.	-	ATCOPIA89	Copia	LTR	5006	long	12	low	4786480	chromoarm	183	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	6407946,6406113	6405916,6405918	-,-	transcript_id-"d3af6524-0886-4d82-a77b-3ac8f21a3140|3",transcript_id-"492af988-41cb-4e9b-80cf-da2472c95dad|5"
Chr5	6408058	6408195	AT5TE23190	.	+	ATCOPIA89	Copia	LTR	137	short	12	low	4786343	chromoarm	46	no-CHH	no-CHH	.	.	.	.	.
Chr5	6411126	6411592	AT5TE23200	.	+	ATREP10D	Helitron	RC	466	short	1295	high	4782946	chromoarm	127	no-CHH	no-CHH	.	.	.	.	.
Chr5	6419700	6420375	AT5TE23230	.	-	ATREP2	Helitron	RC	675	short	164	medium	4774163	chromoarm	707	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	6420375	6421111	AT5TE23235	.	+	ATREP3	Helitron	RC	736	short	1439	high	4773427	chromoarm	1382	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	6421111	6421150	AT5TE23240	.	-	ATREP11	Helitron	RC	39	tiny	841	high	4773388	chromoarm	2118	no-CHH	no-CHH	.	.	.	.	.
Chr5	6422164	6422996	AT5TE23245	.	+	ATREP10A	Helitron	RC	832	short	279	high	4771542	chromoarm	401	no-CHH	no-CHH	.	.	.	.	.
Chr5	6433609	6433630	AT5TE23280	.	-	ATCOPIA53	Copia	LTR	21	tiny	5	low	4760908	chromoarm	1153	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	6433630	6438777	AT5TE23285	.	-	ATCOPIA90	Copia	LTR	5147	long	6	low	4755761	chromoarm	1174	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	6447260	6447519	AT5TE23310	.	-	ATREP4	Helitron	RC	260	short	832	high	4747019	chromoarm	0	.	.	ExpressedAndAnnotated	6446632	6447487	+	transcript_id-"696c6914-0543-4c53-aeac-efad07c63e28|3"
Chr5	6447519	6448215	AT5TE23315	.	-	BRODYAGA2	MuDR	DNA	696	short	525	high	4746323	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	6448676	6448712	AT5TE23320	.	-	ATREP11	Helitron	RC	36	tiny	841	high	4745826	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	6448712	6449818	AT5TE23325	.	-	HELITRONY3	Helitron	RC	1106	short	1399	high	4744720	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	6449818	6450151	AT5TE23330	.	-	ARNOLDY1	MuDR	DNA	333	short	237	high	4744387	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	6450151	6450781	AT5TE23335	.	-	HELITRONY1D	Helitron	RC	630	short	756	high	4743757	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	6450781	6450824	AT5TE23340	.	-	ATREP19	.	DNA	43	tiny	189	medium	4743714	chromoarm	536	no-CHH	no-CHH	.	.	.	.	.
Chr5	6452826	6453214	AT5TE23345	.	-	ATDNA2T9C	MuDR	DNA	388	short	242	high	4741324	chromoarm	160	no-CHH	no-CHH	.	.	.	.	.
Chr5	6460816	6460869	AT5TE23370	.	+	ATMU3N1	MuDR	DNA	53	tiny	19	low	4733669	chromoarm	126	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr5	6460869	6461285	AT5TE23375	.	-	ATMU3N1	MuDR	DNA	416	short	19	low	4733253	chromoarm	158	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	6461287	6461308	AT5TE23380	.	-	BOMZH2	MuDR	DNA	21	tiny	47	low	4733230	chromoarm	135	no-CHH	no-CHH	.	.	.	.	.
Chr5	6469437	6469996	AT5TE23410	.	+	ATREP4	Helitron	RC	559	short	832	high	4724542	chromoarm	212	no-CHH	no-CHH	.	.	.	.	.
Chr5	6475604	6476137	AT5TE23430	.	+	ATREP4	Helitron	RC	533	short	832	high	4718401	chromoarm	1416	no-CHH	no-CHH	.	.	.	.	.
Chr5	6476998	6477212	AT5TE23435	.	+	ATMU2	MuDR	DNA	214	short	64	medium	4717326	chromoarm	341	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	6477875	6478077	AT5TE23440	.	-	ATMU1	MuDR	DNA	202	short	59	medium	4716461	chromoarm	223	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	6493478	6493575	AT5TE23500	.	-	ATHAT2	HAT	DNA	97	tiny	19	low	4700963	chromoarm	296	no-CHH	no-CHH	.	.	.	.	.
Chr5	6498160	6498192	AT5TE23510	.	+	ATTIRX1B	.	DNA	32	tiny	44	low	4696346	chromoarm	173	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	6498192	6498599	AT5TE23515	.	+	ATTIRX1B	.	DNA	407	short	44	low	4695939	chromoarm	205	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	6503433	6503628	AT5TE23525	.	+	ATREP6	Helitron	RC	195	short	181	medium	4690910	chromoarm	1	no-CHH	no-CHH	.	.	.	.	.
Chr5	6503628	6504113	AT5TE23530	.	-	ATTIR16T3A	.	DNA	485	short	106	medium	4690425	chromoarm	196	no-CHH	no-CHH	.	.	.	.	.
Chr5	6504113	6504257	AT5TE23535	.	-	ATREP15	Helitron	RC	144	short	1003	high	4690281	chromoarm	280	no-CHH	no-CHH	.	.	.	.	.
Chr5	6505325	6505443	AT5TE23540	.	-	VANDAL1	MuDR	DNA	118	short	80	medium	4689095	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	6516671	6517066	AT5TE23580	.	-	BRODYAGA1A	MuDR	DNA	395	short	586	high	4677472	chromoarm	509	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	6538458	6538495	AT5TE23660	.	+	HELITRONY1A	Helitron	RC	37	tiny	271	high	4656043	chromoarm	252	no-CHH	no-CHH	.	.	.	.	.
Chr5	6538495	6539564	AT5TE23665	.	-	HELITRONY1E	Helitron	RC	1069	short	447	high	4654974	chromoarm	289	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	6539564	6539715	AT5TE23670	.	+	ATREP3	Helitron	RC	151	short	1439	high	4654823	chromoarm	887	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	6630067	6630629	AT5TE24010	.	-	ATREP10B	Helitron	RC	562	short	491	high	4563909	chromoarm	130	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr5	6630630	6630679	AT5TE24015	.	-	BRODYAGA1A	MuDR	DNA	50	tiny	586	high	4563859	chromoarm	692	.	.	.	.	.	.	.
Chr5	6630717	6630997	AT5TE24020	.	+	ATDNAI27T9A	MuDR	DNA	280	short	116	medium	4563541	chromoarm	780	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	6631438	6631636	AT5TE24025	.	+	LIMPET1	MuDR	DNA	198	short	116	medium	4562902	chromoarm	1501	PolIV-and-RDR6-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr5	6631717	6631826	AT5TE24030	.	+	VANDAL5A	MuDR	DNA	109	short	56	medium	4562712	chromoarm	1780	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	6632774	6632907	AT5TE24035	.	+	ATDNAI27T9A	MuDR	DNA	133	short	116	medium	4561631	chromoarm	2837	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	6632967	6635341	AT5TE24040	.	-	ATDNAI27T9A	MuDR	DNA	2374	medium	116	medium	4559197	chromoarm	1118	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	6634233	6634341	AT5TE24045	.	-	VANDAL5A	MuDR	DNA	109	short	56	medium	4560197	chromoarm	2118	.	.	LowExpressed	.	.	.	.
Chr5	6634423	6634620	AT5TE24050	.	-	LIMPET1	MuDR	DNA	198	short	116	medium	4559918	chromoarm	1839	.	.	LowExpressed	.	.	.	.
Chr5	6635356	6635472	AT5TE24055	.	+	VANDAL4	MuDR	DNA	116	short	102	medium	4559066	chromoarm	987	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	6662488	6663211	AT5TE24150	.	-	ATREP11	Helitron	RC	723	short	841	high	4531327	chromoarm	141	no-CHH	no-CHH	.	.	.	.	.
Chr5	6663621	6663787	AT5TE24155	.	-	ATSINE2A	.	SINE	166	short	33	low	4530751	chromoarm	957	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	6664993	6665072	AT5TE24160	.	+	HELITRONY1D	Helitron	RC	79	tiny	756	high	4529466	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	6693172	6693596	AT5TE24260	.	+	ATENSPM1A	En-Spm	DNA	425	short	77	medium	4500942	chromoarm	0	.	.	.	.	.	.	.
Chr5	6701343	6701476	AT5TE24290	.	-	HELITRONY1C	Helitron	RC	133	short	120	medium	4493062	chromoarm	96	no-CHH	no-CHH	.	.	.	.	.
Chr5	6701476	6702514	AT5TE24295	.	-	ATREP1	Helitron	RC	1038	short	498	high	4492024	chromoarm	229	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	6702514	6702577	AT5TE24300	.	+	VANDAL8	MuDR	DNA	63	tiny	123	medium	4491961	chromoarm	805	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	6728580	6729084	AT5TE24400	.	+	VANDAL17	MuDR	DNA	504	short	178	medium	4465454	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	6755893	6756582	AT5TE24500	.	+	HELITRONY3	Helitron	RC	689	short	1399	high	4437956	chromoarm	332	no-CHH	no-CHH	.	.	.	.	.
Chr5	6762054	6762327	AT5TE24520	.	-	ATCOPIA49	Copia	LTR	273	short	34	low	4432211	chromoarm	307	no-CHH	no-CHH	.	.	.	.	.
Chr5	6823932	6824077	AT5TE24750	.	+	ATCOPIA27	Copia	LTR	145	short	19	low	4370461	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	6830997	6831121	AT5TE24780	.	-	HELITRON5	Helitron	RC	124	short	56	medium	4363417	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	6843958	6844284	AT5TE24830	.	+	ATLINE1_3A	L1	LINE	326	short	160	medium	4350254	chromoarm	709	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	6881209	6881309	AT5TE24970	.	-	ATTIRTA1	Tc1	DNA	100	short	95	medium	4313229	chromoarm	107	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	6886007	6886187	AT5TE24980	.	+	HELITRONY1E	Helitron	RC	180	short	447	high	4308351	chromoarm	743	no-CHH	no-CHH	.	.	.	.	.
Chr5	6886187	6886638	AT5TE24985	.	+	TNAT1A	.	DNA	451	short	162	medium	4307900	chromoarm	292	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	6886638	6886690	AT5TE24990	.	-	ARNOLD3	MuDR	DNA	52	tiny	45	low	4307848	chromoarm	240	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	6906506	6906603	AT5TE25060	.	+	BRODYAGA1	MuDR	DNA	97	tiny	251	high	4287935	chromoarm	1115	no-CHH	no-RdDM	.	.	.	.	.
Chr5	6906606	6906825	AT5TE25065	.	-	BRODYAGA1A	MuDR	DNA	219	short	586	high	4287713	chromoarm	1215	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	6913468	6913794	AT5TE25080	.	-	BRODYAGA2	MuDR	DNA	326	short	525	high	4280744	chromoarm	336	no-CHH	no-CHH	.	.	.	.	.
Chr5	6913794	6915667	AT5TE25085	.	+	LIMPET1	MuDR	DNA	1873	short	116	medium	4278871	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	6922331	6922382	AT5TE25100	.	+	ATIS112A	Harbinger	DNA	51	tiny	173	medium	4272156	chromoarm	114	no-CHH	no-CHH	.	.	.	.	.
Chr5	6925996	6926017	AT5TE25110	.	+	ATMU3N1	MuDR	DNA	21	tiny	19	low	4268521	chromoarm	317	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	6926017	6926463	AT5TE25115	.	-	ATMU3N1	MuDR	DNA	446	short	19	low	4268075	chromoarm	338	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	6933179	6933213	AT5TE25130	.	+	ATCOPIA88	Copia	LTR	34	tiny	8	low	4261325	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	6937455	6937683	AT5TE25140	.	+	ATDNAI27T9B	MuDR	DNA	228	short	43	low	4256855	chromoarm	630	no-CHH	no-CHH	.	.	.	.	.
Chr5	6982965	6983117	AT5TE25310	.	+	ATHAT1	HAT	DNA	153	short	105	medium	4211421	chromoarm	1197	.	.	LowExpressed	.	.	.	.
Chr5	6994781	6995163	AT5TE25350	.	-	ATREP11	Helitron	RC	382	short	841	high	4199375	chromoarm	988	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	6995163	6995680	AT5TE25355	.	-	HELITRONY1B	Helitron	RC	517	short	414	high	4198858	chromoarm	1370	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	7006997	7007132	AT5TE25390	.	-	ATENSPM9	En-Spm	DNA	135	short	97	medium	4187406	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	7007443	7008279	AT5TE25395	.	+	ATREP7	Helitron	RC	836	short	164	medium	4186259	chromoarm	440	no-CHH	no-CHH	.	.	.	.	.
Chr5	7009223	7010410	AT5TE25400	.	-	ATREP10D	Helitron	RC	1187	short	1295	high	4184128	chromoarm	125	no-CHH	no-CHH	.	.	.	.	.
Chr5	7010411	7010496	AT5TE25405	.	+	ATREP3	Helitron	RC	85	tiny	1439	high	4184042	chromoarm	39	no-CHH	no-CHH	.	.	.	.	.
Chr5	7018392	7018731	AT5TE25430	.	-	ATCOPIA5	Copia	LTR	339	short	16	low	4175807	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	7024497	7025092	AT5TE25450	.	+	HELITRONY1D	Helitron	RC	595	short	756	high	4169446	chromoarm	25	no-CHH	no-CHH	.	.	.	.	.
Chr5	7027972	7037665	AT5TE25460	.	-	VANDAL20	MuDR	DNA	9693	long	51	medium	4156873	chromoarm	1488	no-RdDM	no-RdDM	ExpressedAndAnnotated	7031185,7034950,7035406	7031471,7033961,7035275	+,-,-	transcript_id-"ece255ee-f4bd-4184-b65c-8509080d3c7d|7",transcript_id-"3c410900-328d-41f0-bdbd-3299106307f8|4",transcript_id-"fc20b78a-dfbd-4d6c-9329-4396f195b23a|3"
Chr5	7037665	7037779	AT5TE25465	.	-	VANDAL20	MuDR	DNA	114	short	51	medium	4156759	chromoarm	2266	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	7038185	7038206	AT5TE25470	.	-	VANDAL20	MuDR	DNA	21	tiny	51	medium	4156332	chromoarm	1839	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	7038206	7038553	AT5TE25475	.	-	VANDAL20	MuDR	DNA	347	short	51	medium	4155985	chromoarm	1492	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	7041124	7042955	AT5TE25480	.	+	ATLINE1A	L1	LINE	1831	short	289	high	4151583	chromoarm	497	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	7049896	7050041	AT5TE25510	.	-	ATCOPIA90	Copia	LTR	145	short	6	low	4144497	chromoarm	557	no-CHH	no-CHH	.	.	.	.	.
Chr5	7055335	7055435	AT5TE25520	.	+	HELITRONY3	Helitron	RC	100	short	1399	high	4139103	chromoarm	1303	no-CHH	no-CHH	.	.	.	.	.
Chr5	7055435	7056052	AT5TE25525	.	+	HELITRONY2	Helitron	RC	617	short	198	medium	4138486	chromoarm	1403	no-CHH	no-CHH	.	.	.	.	.
Chr5	7056052	7056104	AT5TE25530	.	-	ATREP5	Helitron	RC	52	tiny	624	high	4138434	chromoarm	2020	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	7056104	7057389	AT5TE25535	.	-	ATREP12	Helitron	RC	1285	short	22	low	4137149	chromoarm	2072	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	7057236,7057279,7056395	7056233,7056237,7056994	-,-,+	transcript_id-"aae0c931-5f8a-4e3d-999f-bb4ca54382d2|3",transcript_id-"f9e975dc-c8a4-4e9e-b52e-c48023b0c460|3",transcript_id-"e69f2c27-f91b-4c37-8830-0fd90802886d|5"
Chr5	7057991	7058588	AT5TE25540	.	-	ATREP4	Helitron	RC	597	short	832	high	4135950	chromoarm	3049	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	7058588	7058711	AT5TE25545	.	+	HELITRONY1A	Helitron	RC	123	short	271	high	4135827	chromoarm	2926	no-CHH	no-CHH	.	.	.	.	.
Chr5	7069516	7070690	AT5TE25580	.	-	VANDAL8	MuDR	DNA	1174	short	123	medium	4123848	chromoarm	67	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	7069990	7070530	AT5TE25585	.	+	ATREP2	Helitron	RC	540	short	164	medium	4124008	chromoarm	227	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	7073197	7074005	AT5TE25590	.	-	ATREP5	Helitron	RC	808	short	624	high	4120533	chromoarm	337	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	7074005	7074433	AT5TE25595	.	-	HELITRONY1D	Helitron	RC	428	short	756	high	4120105	chromoarm	1145	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	7074433	7076706	AT5TE25600	.	+	ATREP10B	Helitron	RC	2273	medium	491	high	4117832	chromoarm	183	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	7076706	7076905	AT5TE25605	.	+	ATREP10A	Helitron	RC	199	short	279	high	4117633	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	7082103	7083226	AT5TE25615	.	-	Unassigned	.	Unassigned	1123	short	.	low	4111312	chromoarm	364	no-CHH	no-CHH	ExpressedAndAnnotated	7083246,7082757	7082206,7082258	-,-	transcript_id-"bff7a7cc-2c22-40b1-be60-c1727ea5cc32|33",transcript_id-"42bbf2e0-5963-496a-a4b5-43d7e655cf04|3"
Chr5	7097113	7097562	AT5TE25660	.	+	ATREP19	.	DNA	449	short	189	medium	4096976	chromoarm	452	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	7114564	7114867	AT5TE25720	.	+	VANDAL12	MuDR	DNA	303	short	37	low	4079671	chromoarm	1915	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	7115162	7115485	AT5TE25725	.	+	VANDAL9	MuDR	DNA	323	short	43	low	4079053	chromoarm	1297	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	7133435	7133522	AT5TE25790	.	+	ATREP1	Helitron	RC	87	tiny	498	high	4061016	chromoarm	38	no-CHH	DCL3-RdDM	.	.	.	.	.
Chr5	7133533	7134294	AT5TE25795	.	+	ATREP10B	Helitron	RC	761	short	491	high	4060244	chromoarm	136	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	7134294	7134525	AT5TE25800	.	+	HELITRONY3	Helitron	RC	231	short	1399	high	4060013	chromoarm	897	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	7152939	7155014	AT5TE25870	.	-	ATREP3	Helitron	RC	2076	medium	1439	high	4039524	chromoarm	193	.	.	.	.	.	.	.
Chr5	7155014	7155155	AT5TE25875	.	-	ATREP3	Helitron	RC	141	short	1439	high	4039383	chromoarm	1200	no-RdDM	no-CHH	.	.	.	.	.
Chr5	7175244	7175298	AT5TE25940	.	-	ATREP11	Helitron	RC	54	tiny	841	high	4019240	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	7175298	7175415	AT5TE25945	.	-	ATREP7	Helitron	RC	117	short	164	medium	4019123	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	7175415	7176141	AT5TE25950	.	-	ATREP7	Helitron	RC	726	short	164	medium	4018397	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	7180026	7180081	AT5TE25960	.	-	ATREP10D	Helitron	RC	55	tiny	1295	high	4014457	chromoarm	940	no-CHH	no-CHH	.	.	.	.	.
Chr5	7180081	7181785	AT5TE25965	.	+	ATREP3	Helitron	RC	1704	short	1439	high	4012753	chromoarm	843	no-CHH	no-CHH	.	.	.	.	.
Chr5	7184473	7185066	AT5TE25970	.	+	ATREP10D	Helitron	RC	593	short	1295	high	4009472	chromoarm	0	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	7185066	7185332	AT5TE25975	.	-	ATLINEIII	L1	LINE	266	short	196	medium	4009206	chromoarm	0	no-CHH	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	7205606	7205714	AT5TE26050	.	+	ATDNAI27T9A	MuDR	DNA	108	short	116	medium	3988824	chromoarm	3	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	7213957	7214069	AT5TE26080	.	+	TAG1	HAT	DNA	112	short	28	low	3980469	chromoarm	257	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	7216082	7216104	AT5TE26085	.	-	ATREP10D	Helitron	RC	22	tiny	1295	high	3978434	chromoarm	132	no-CHH	DCL3-RdDM	.	.	.	.	.
Chr5	7216104	7217228	AT5TE26090	.	+	ATREP4	Helitron	RC	1124	short	832	high	3977310	chromoarm	154	no-CHH	no-CHH	.	.	.	.	.
Chr5	7235084	7235222	AT5TE26160	.	-	ATHPOGON1	Pogo	DNA	138	short	174	medium	3959316	chromoarm	3016	no-CHH	no-CHH	.	.	.	.	.
Chr5	7236284	7236362	AT5TE26165	.	+	HELITRONY3	Helitron	RC	78	tiny	1399	high	3958176	chromoarm	1876	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	7250810	7251054	AT5TE26210	.	-	META1	Copia	LTR	244	short	138	medium	3943484	chromoarm	457	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	7289273	7289421	AT5TE26350	.	-	ATENSPM5	En-Spm	DNA	148	short	111	medium	3905117	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	7299147	7299361	AT5TE26390	.	+	ATHATN4	HAT	DNA	214	short	56	medium	3895177	chromoarm	784	no-CHH	no-CHH	.	.	.	.	.
Chr5	7300407	7300605	AT5TE26395	.	+	SIMPLEHAT1	HAT	DNA	198	short	56	medium	3893933	chromoarm	861	no-CHH	no-CHH	.	.	.	.	.
Chr5	7305858	7306563	AT5TE26405	.	+	ATREP4	Helitron	RC	705	short	832	high	3887975	chromoarm	190	no-CHH	no-CHH	.	.	.	.	.
Chr5	7306566	7306617	AT5TE26410	.	+	HELITRONY1D	Helitron	RC	51	tiny	756	high	3887921	chromoarm	898	no-CHH	no-CHH	.	.	.	.	.
Chr5	7317796	7318449	AT5TE26450	.	+	ATREP11	Helitron	RC	653	short	841	high	3876089	chromoarm	1402	no-CHH	no-CHH	.	.	.	.	.
Chr5	7319252	7320044	AT5TE26455	.	+	ATREP10D	Helitron	RC	792	short	1295	high	3874494	chromoarm	2858	no-CHH	no-CHH	.	.	.	.	.
Chr5	7320867	7321407	AT5TE26460	.	+	HELITRONY1D	Helitron	RC	540	short	756	high	3873131	chromoarm	4473	no-CHH	no-CHH	.	.	.	.	.
Chr5	7323594	7323619	AT5TE26465	.	-	ARNOLDY2	MuDR	DNA	25	tiny	288	high	3870919	chromoarm	5395	no-CHH	no-CHH	.	.	.	.	.
Chr5	7323619	7324444	AT5TE26470	.	-	HELITRONY1B	Helitron	RC	825	short	414	high	3870094	chromoarm	4570	no-CHH	no-CHH	.	.	.	.	.
Chr5	7324444	7324494	AT5TE26475	.	-	HELITRONY1C	Helitron	RC	50	tiny	120	medium	3870044	chromoarm	4520	no-CHH	no-CHH	.	.	.	.	.
Chr5	7328135	7328184	AT5TE26485	.	-	ATREP3	Helitron	RC	49	tiny	1439	high	3866354	chromoarm	830	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	7328185	7328229	AT5TE26490	.	-	ATREP5	Helitron	RC	45	tiny	624	high	3866309	chromoarm	785	.	.	.	.	.	.	.
Chr5	7344353	7344458	AT5TE26550	.	-	ATTIRX1C	.	DNA	105	short	39	low	3850080	chromoarm	0	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	7344747	7345294	AT5TE26555	.	+	ATREP9	Helitron	RC	547	short	201	high	3849244	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	7348338	7348658	AT5TE26565	.	+	ATREP3	Helitron	RC	320	short	1439	high	3845880	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	7351185	7351277	AT5TE26570	.	-	HELITRONY1E	Helitron	RC	92	tiny	447	high	3843261	chromoarm	0	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr5	7351277	7352730	AT5TE26575	.	-	ATREP10D	Helitron	RC	1453	short	1295	high	3841808	chromoarm	87	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	7352730	7352764	AT5TE26580	.	+	ATREP10D	Helitron	RC	34	tiny	1295	high	3841774	chromoarm	305	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	7352764	7352865	AT5TE26585	.	-	ATREP15	Helitron	RC	101	short	1003	high	3841673	chromoarm	204	PolIV-and-RDR6-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	7356130	7356549	AT5TE26595	.	-	HELITRONY1D	Helitron	RC	419	short	756	high	3837989	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	7384221	7384492	AT5TE26690	.	+	VANDAL17	MuDR	DNA	271	short	178	medium	3810046	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	7386385	7386476	AT5TE26695	.	+	DT1	Mariner	DNA	91	tiny	123	medium	3808062	chromoarm	1040	no-CHH	no-CHH	.	.	.	.	.
Chr5	7412815	7413020	AT5TE26790	.	-	ATDNAI27T9A	MuDR	DNA	205	short	116	medium	3781518	chromoarm	2777	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	7413553	7413865	AT5TE26795	.	-	ATDNA1T9A	MuDR	DNA	312	short	36	low	3780673	chromoarm	3515	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	7414344	7414413	AT5TE26800	.	-	LIMPET1	MuDR	DNA	69	tiny	116	medium	3780125	chromoarm	3969	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	7414524	7415085	AT5TE26805	.	-	ATDNAI27T9B	MuDR	DNA	561	short	43	low	3779453	chromoarm	3297	no-RdDM	no-RdDM	ExpressedAndAnnotated	7415689	7414955	-	transcript_id-"1084ad7c-7d55-42a6-bd47-fe0331e7dd56|7"
Chr5	7415657	7416084	AT5TE26810	.	-	ATDNAI27T9A	MuDR	DNA	427	short	116	medium	3778454	chromoarm	2298	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	7417226	7417331	AT5TE26815	.	+	ATREP1	Helitron	RC	105	short	498	high	3777207	chromoarm	1051	no-CHH	no-CHH	.	.	.	.	.
Chr5	7417332	7417937	AT5TE26820	.	+	ATREP2	Helitron	RC	605	short	164	medium	3776601	chromoarm	445	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	7417937	7418202	AT5TE26825	.	+	ATREP15	Helitron	RC	265	short	1003	high	3776336	chromoarm	180	no-CHH	no-CHH	.	.	.	.	.
Chr5	7430837	7431008	AT5TE26870	.	+	ATTIRTA1	Tc1	DNA	171	short	95	medium	3763530	chromoarm	0	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	7457360	7457712	AT5TE26970	.	+	ATLINE1A	L1	LINE	352	short	289	high	3736826	chromoarm	1192	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	7457247	7457712	+	transcript_id-"58a715ca-bff1-44ab-93d4-b83d67dac03d|4"
Chr5	7465995	7466544	AT5TE27000	.	+	ARNOLDY1	MuDR	DNA	549	short	237	high	3727994	chromoarm	3996	no-CHH	no-CHH	.	.	.	.	.
Chr5	7478460	7478632	AT5TE27040	.	-	RathE3_cons	.	RathE3_cons	172	short	104	medium	3715906	chromoarm	376	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	7481186	7481309	AT5TE27045	.	-	ATLINE1_4	L1	LINE	123	short	102	medium	3713229	chromoarm	143	no-CHH	no-CHH	.	.	.	.	.
Chr5	7487049	7487199	AT5TE27060	.	+	RathE1_cons	.	RathE1_cons	150	short	213	high	3707339	chromoarm	1616	no-CHH	no-CHH	.	.	.	.	.
Chr5	7487443	7487688	AT5TE27065	.	+	ATMU1	MuDR	DNA	245	short	59	medium	3706850	chromoarm	1761	no-CHH	no-CHH	.	.	.	.	.
Chr5	7487943	7488092	AT5TE27070	.	-	ATREP1	Helitron	RC	149	short	498	high	3706446	chromoarm	1357	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr5	7488092	7488975	AT5TE27075	.	-	ATREP1	Helitron	RC	883	short	498	high	3705563	chromoarm	474	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	7488976	7489392	AT5TE27080	.	+	ATREP15	Helitron	RC	416	short	1003	high	3705146	chromoarm	57	no-CHH	no-CHH	.	.	.	.	.
Chr5	7489392	7489520	AT5TE27085	.	+	HELITRONY1E	Helitron	RC	128	short	447	high	3705018	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	7490952	7491104	AT5TE27090	.	+	RathE3_cons	.	RathE3_cons	152	short	104	medium	3703434	chromoarm	439	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	7494735	7494765	AT5TE27100	.	+	TNAT1A	.	DNA	30	tiny	162	medium	3699773	chromoarm	842	no-CHH	no-CHH	.	.	.	.	.
Chr5	7494765	7495494	AT5TE27105	.	+	TNAT1A	.	DNA	729	short	162	medium	3699044	chromoarm	113	no-CHH	no-CHH	.	.	.	.	.
Chr5	7495494	7495524	AT5TE27110	.	+	TNAT1A	.	DNA	30	tiny	162	medium	3699014	chromoarm	83	no-CHH	no-CHH	.	.	.	.	.
Chr5	7495524	7495586	AT5TE27115	.	+	ARNOLDY1	MuDR	DNA	62	tiny	237	high	3698952	chromoarm	21	no-CHH	no-CHH	.	.	.	.	.
Chr5	7507095	7507176	AT5TE27150	.	+	BRODYAGA2	MuDR	DNA	81	tiny	525	high	3687362	chromoarm	1257	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	7507176	7509306	AT5TE27155	.	-	ATREP4	Helitron	RC	2130	medium	832	high	3685232	chromoarm	1131	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	7509306	7509755	AT5TE27160	.	-	ATREP4	Helitron	RC	449	short	832	high	3684783	chromoarm	682	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	7514565	7514857	AT5TE27170	.	+	ATIS112A	Harbinger	DNA	292	short	173	medium	3679681	chromoarm	359	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	7523148	7524102	AT5TE27200	.	-	ATREP3	Helitron	RC	954	short	1439	high	3670436	chromoarm	542	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	7528851	7529022	AT5TE27210	.	+	RathE3_cons	.	RathE3_cons	171	short	104	medium	3665516	chromoarm	400	no-CHH	no-CHH	.	.	.	.	.
Chr5	7532717	7532903	AT5TE27220	.	-	ATENSPM5	En-Spm	DNA	186	short	111	medium	3661635	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	7532965	7533059	AT5TE27225	.	-	ARNOLD1	MuDR	DNA	94	tiny	39	low	3661479	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	7604777	7604802	AT5TE27490	.	+	ATREP3	Helitron	RC	25	tiny	1439	high	3589736	chromoarm	6	no-CHH	no-CHH	.	.	.	.	.
Chr5	7604819	7605898	AT5TE27495	.	+	ATREP3	Helitron	RC	1079	short	1439	high	3588640	chromoarm	48	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	7614994	7615752	AT5TE27520	.	-	ATREP15	Helitron	RC	758	short	1003	high	3578786	chromoarm	468	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	7615752	7615773	AT5TE27525	.	-	ATREP9	Helitron	RC	21	tiny	201	high	3578765	chromoarm	447	no-CHH	no-CHH	.	.	.	.	.
Chr5	7620454	7620592	AT5TE27535	.	+	ATHILA7	Gypsy	LTR	138	short	134	medium	3573946	chromoarm	493	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	7636532	7637136	AT5TE27590	.	-	HELITRONY3	Helitron	RC	604	short	1399	high	3557402	chromoarm	234	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	7637854	7638246	AT5TE27595	.	-	ATREP10D	Helitron	RC	392	short	1295	high	3556292	chromoarm	1264	no-CHH	no-CHH	.	.	.	.	.
Chr5	7638246	7639339	AT5TE27600	.	+	ATREP10B	Helitron	RC	1093	short	491	high	3555199	chromoarm	171	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	7639339	7639401	AT5TE27605	.	+	HELITRON2	Helitron	RC	62	tiny	194	medium	3555137	chromoarm	109	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	7639965	7640704	AT5TE27610	.	+	HELITRONY1A	Helitron	RC	739	short	271	high	3553834	chromoarm	0	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	7643691	7643926	AT5TE27620	.	-	HELITRONY3A	Helitron	RC	235	short	49	low	3550612	chromoarm	746	no-CHH	no-RdDM	.	.	.	.	.
Chr5	7643928	7644545	AT5TE27625	.	+	ATREP13	Helitron	RC	617	short	106	medium	3549993	chromoarm	983	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	7644546	7644741	AT5TE27630	.	-	ATREP3	Helitron	RC	196	short	1439	high	3549797	chromoarm	1600	.	.	.	.	.	.	.
Chr5	7647940	7648074	AT5TE27640	.	+	ATREP10B	Helitron	RC	134	short	491	high	3546464	chromoarm	261	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr5	7648074	7648175	AT5TE27645	.	+	ATDNA2T9C	MuDR	DNA	101	short	242	high	3546363	chromoarm	395	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	7648175	7648965	AT5TE27650	.	-	ATREP5	Helitron	RC	790	short	624	high	3545573	chromoarm	496	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	7648965	7649817	AT5TE27655	.	+	ATREP15	Helitron	RC	852	short	1003	high	3544721	chromoarm	1286	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	7650244	7650469	AT5TE27660	.	-	VANDAL18NB	MuDR	DNA	225	short	19	low	3544069	chromoarm	837	no-CHH	no-CHH	.	.	.	.	.
Chr5	7654886	7655431	AT5TE27670	.	-	ATREP4	Helitron	RC	545	short	832	high	3539107	chromoarm	224	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	7673540	7673781	AT5TE27740	.	+	ATMUNX1	MuDR	DNA	241	short	155	medium	3520757	chromoarm	3415	no-CHH	no-CHH	.	.	.	.	.
Chr5	7692486	7693606	AT5TE27810	.	-	HELITRONY1E	Helitron	RC	1120	short	447	high	3500932	chromoarm	18	no-CHH	no-CHH	.	.	.	.	.
Chr5	7693606	7693743	AT5TE27815	.	+	ATREP9	Helitron	RC	137	short	201	high	3500795	chromoarm	1138	no-CHH	no-CHH	.	.	.	.	.
Chr5	7698081	7699572	AT5TE27825	.	+	ATREP3	Helitron	RC	1491	short	1439	high	3494966	chromoarm	369	no-CHH	no-CHH	.	.	.	.	.
Chr5	7698399	7698755	AT5TE27830	.	+	ATHATN7	HAT	DNA	356	short	71	medium	3495783	chromoarm	687	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	7700486	7700587	AT5TE27835	.	-	ATREP15	Helitron	RC	101	short	1003	high	3493951	chromoarm	2585	no-CHH	no-CHH	.	.	.	.	.
Chr5	7700587	7701384	AT5TE27840	.	-	ATREP2	Helitron	RC	797	short	164	medium	3493154	chromoarm	1788	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	7701384	7701433	AT5TE27845	.	-	ATREP1	Helitron	RC	49	tiny	498	high	3493105	chromoarm	1739	no-CHH	no-CHH	.	.	.	.	.
Chr5	7701433	7701459	AT5TE27850	.	-	ATREP3	Helitron	RC	26	tiny	1439	high	3493079	chromoarm	1713	no-CHH	no-CHH	.	.	.	.	.
Chr5	7702273	7702554	AT5TE27855	.	-	ATREP5	Helitron	RC	281	short	624	high	3491984	chromoarm	618	no-CHH	no-CHH	.	.	.	.	.
Chr5	7702554	7702786	AT5TE27860	.	-	ATTIRTA1	Tc1	DNA	232	short	95	medium	3491752	chromoarm	386	no-CHH	no-CHH	.	.	.	.	.
Chr5	7702786	7703115	AT5TE27865	.	-	ATREP11	Helitron	RC	329	short	841	high	3491423	chromoarm	57	no-CHH	no-CHH	.	.	.	.	.
Chr5	7707399	7707465	AT5TE27875	.	-	ATREP3	Helitron	RC	66	tiny	1439	high	3487073	chromoarm	630	no-CHH	no-CHH	.	.	.	.	.
Chr5	7707465	7708281	AT5TE27880	.	-	ATREP4	Helitron	RC	816	short	832	high	3486257	chromoarm	696	no-CHH	no-CHH	.	.	.	.	.
Chr5	7708281	7708318	AT5TE27885	.	+	HELITRONY3	Helitron	RC	37	tiny	1399	high	3486220	chromoarm	1512	no-CHH	no-CHH	.	.	.	.	.
Chr5	7709483	7710380	AT5TE27890	.	+	ATREP1	Helitron	RC	897	short	498	high	3484158	chromoarm	2714	no-CHH	no-CHH	.	.	.	.	.
Chr5	7710380	7710489	AT5TE27895	.	+	HELITRONY3	Helitron	RC	109	short	1399	high	3484049	chromoarm	3611	no-RdDM	no-CHH	.	.	.	.	.
Chr5	7710489	7710695	AT5TE27900	.	+	ATREP3	Helitron	RC	206	short	1439	high	3483843	chromoarm	3720	no-RdDM	no-CHH	.	.	.	.	.
Chr5	7710695	7713574	AT5TE27905	.	+	ATREP3	Helitron	RC	2879	medium	1439	high	3480964	chromoarm	3926	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	7713574	7714513	AT5TE27910	.	-	ATREP10B	Helitron	RC	939	short	491	high	3480025	chromoarm	3689	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	7714513	7716574	AT5TE27915	.	+	HELITRONY3	Helitron	RC	2061	medium	1399	high	3477964	chromoarm	1628	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	7716574	7716804	AT5TE27920	.	-	ATLINE1_3A	L1	LINE	230	short	160	medium	3477734	chromoarm	1398	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	7741072	7741828	AT5TE28010	.	+	ATREP11	Helitron	RC	756	short	841	high	3452710	chromoarm	150	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	7757369	7758011	AT5TE28070	.	+	ATREP10D	Helitron	RC	642	short	1295	high	3436527	chromoarm	295	no-CHH	no-CHH	.	.	.	.	.
Chr5	7758011	7758144	AT5TE28075	.	+	ATREP15	Helitron	RC	133	short	1003	high	3436394	chromoarm	162	no-CHH	no-CHH	.	.	.	.	.
Chr5	7776155	7776212	AT5TE28140	.	-	HELITRON2	Helitron	RC	57	tiny	194	medium	3418326	chromoarm	646	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	7776212	7776975	AT5TE28145	.	+	ATREP10D	Helitron	RC	763	short	1295	high	3417563	chromoarm	703	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	7797068	7797144	AT5TE28210	.	+	ATLINE1A	L1	LINE	76	tiny	289	high	3397394	chromoarm	758	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	7800482	7800667	AT5TE28220	.	+	ATCOPIA95	Copia	LTR	185	short	72	medium	3393871	chromoarm	806	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	7800674	7800908	AT5TE28225	.	+	ATSINE4	.	SINE	234	short	98	medium	3393630	chromoarm	565	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	7806583	7806911	AT5TE28240	.	+	TSCL	.	LINE?	328	short	81	medium	3387627	chromoarm	407	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	7815075	7815823	AT5TE28270	.	+	HELITRONY3	Helitron	RC	748	short	1399	high	3378715	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	7815823	7817333	AT5TE28275	.	+	ATREP10D	Helitron	RC	1510	short	1295	high	3377205	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	7817343	7817595	AT5TE28280	.	-	ATLINE1_6	L1	LINE	252	short	129	medium	3376943	chromoarm	1461	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	7818033	7819050	AT5TE28285	.	-	SIMPLEGUY1	Harbinger	DNA	1017	short	116	medium	3375488	chromoarm	1017	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	7818047	7819010	AT5TE28290	.	-	SIMPLEGUY1	Harbinger	DNA	963	short	116	medium	3375528	chromoarm	1057	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	7821212	7821624	AT5TE28295	.	+	BRODYAGA1	MuDR	DNA	412	short	251	high	3372914	chromoarm	548	no-CHH	no-CHH	.	.	.	.	.
Chr5	7821624	7821795	AT5TE28300	.	-	ATREP10D	Helitron	RC	171	short	1295	high	3372743	chromoarm	960	no-CHH	no-CHH	.	.	.	.	.
Chr5	7821795	7823160	AT5TE28305	.	+	ATREP5	Helitron	RC	1365	short	624	high	3371378	chromoarm	1131	no-CHH	no-CHH	.	.	.	.	.
Chr5	7823160	7823437	AT5TE28310	.	+	HELITRONY3	Helitron	RC	277	short	1399	high	3371101	chromoarm	2496	no-CHH	no-CHH	.	.	.	.	.
Chr5	7829095	7829240	AT5TE28330	.	-	VANDAL16	MuDR	DNA	145	short	42	low	3365298	chromoarm	561	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	7829628	7829782	AT5TE28335	.	+	ATDNA2T9C	MuDR	DNA	154	short	242	high	3364756	chromoarm	677	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	7829782	7830291	AT5TE28340	.	+	BRODYAGA2	MuDR	DNA	509	short	525	high	3364247	chromoarm	168	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	7833533	7833867	AT5TE28350	.	+	ATREP10A	Helitron	RC	335	short	279	high	3360671	chromoarm	1041	.	.	.	.	.	.	.
Chr5	7833867	7834774	AT5TE28355	.	+	ATREP10	Helitron	RC	907	short	63	medium	3359764	chromoarm	1376	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	7834774	7835185	AT5TE28360	.	+	ATREP10B	Helitron	RC	411	short	491	high	3359353	chromoarm	1256	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	7841976	7842073	AT5TE28390	.	+	ATHPOGON3	Pogo	DNA	97	tiny	118	medium	3352465	chromoarm	943	no-CHH	no-CHH	.	.	.	.	.
Chr5	7845331	7846001	AT5TE28400	.	-	HELITRONY3	Helitron	RC	670	short	1399	high	3348537	chromoarm	142	no-CHH	no-CHH	.	.	.	.	.
Chr5	7866168	7866576	AT5TE28470	.	-	ATCOPIA30	Copia	LTR	408	short	33	low	3327962	chromoarm	165	no-CHH	no-CHH	.	.	.	.	.
Chr5	7870178	7870275	AT5TE28480	.	+	ATDNAI27T9A	MuDR	DNA	97	tiny	116	medium	3324263	chromoarm	80	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	7876609	7876709	AT5TE28500	.	-	ATLINE1_3A	L1	LINE	100	short	160	medium	3317829	chromoarm	518	no-CHH	no-CHH	.	.	.	.	.
Chr5	7885202	7885341	AT5TE28530	.	-	ATIS112A	Harbinger	DNA	139	short	173	medium	3309197	chromoarm	959	no-CHH	no-CHH	.	.	.	.	.
Chr5	7892957	7893532	AT5TE28560	.	+	ATHATN6	HAT	DNA	575	short	43	low	3301006	chromoarm	540	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	7909601	7911784	AT5TE28620	.	+	ATREP10D	Helitron	RC	2183	medium	1295	high	3282754	chromoarm	641	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	7911784	7911897	AT5TE28625	.	-	ATREP10D	Helitron	RC	113	short	1295	high	3282641	chromoarm	1174	no-CHH	no-CHH	.	.	.	.	.
Chr5	7915738	7915850	AT5TE28635	.	+	ATCOPIA37	Copia	LTR	112	short	32	low	3278688	chromoarm	463	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr5	7941622	7941672	AT5TE28730	.	-	ATREP11	Helitron	RC	50	tiny	841	high	3252866	chromoarm	143	no-CHH	no-CHH	.	.	.	.	.
Chr5	7941691	7941746	AT5TE28735	.	+	META1	Copia	LTR	55	tiny	138	medium	3252792	chromoarm	212	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	7941746	7942977	AT5TE28740	.	-	ATREP1	Helitron	RC	1231	short	498	high	3251561	chromoarm	267	no-CHH	no-CHH	.	.	.	.	.
Chr5	7945697	7945794	AT5TE28750	.	-	ATMU2	MuDR	DNA	97	tiny	64	medium	3248744	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	7952587	7952616	AT5TE28780	.	+	HELITRONY1B	Helitron	RC	29	tiny	414	high	3241922	chromoarm	154	no-CHH	no-CHH	.	.	.	.	.
Chr5	7952616	7953141	AT5TE28785	.	+	ATREP10D	Helitron	RC	525	short	1295	high	3241397	chromoarm	183	no-CHH	no-CHH	.	.	.	.	.
Chr5	7953141	7953188	AT5TE28790	.	-	HELITRONY1B	Helitron	RC	47	tiny	414	high	3241350	chromoarm	681	no-CHH	no-CHH	.	.	.	.	.
Chr5	7968314	7968910	AT5TE28850	.	+	ATHATN3A	HAT	DNA	596	short	20	low	3225628	chromoarm	0	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	7968910	7968949	AT5TE28855	.	-	ATREP10	Helitron	RC	39	tiny	63	medium	3225589	chromoarm	408	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr5	7968949	7969323	AT5TE28860	.	-	BRODYAGA1A	MuDR	DNA	374	short	586	high	3225215	chromoarm	447	no-CHH	no-CHH	.	.	.	.	.
Chr5	7969323	7969600	AT5TE28865	.	-	ATREP10A	Helitron	RC	277	short	279	high	3224938	chromoarm	211	no-CHH	no-CHH	.	.	.	.	.
Chr5	7978554	7979146	AT5TE28890	.	+	BRODYAGA1	MuDR	DNA	592	short	251	high	3215392	chromoarm	2742	no-CHH	no-CHH	.	.	.	.	.
Chr5	7990926	7991290	AT5TE28930	.	+	BRODYAGA1	MuDR	DNA	364	short	251	high	3203248	chromoarm	460	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	7992331	7992646	AT5TE28935	.	-	META1	Copia	LTR	315	short	138	medium	3201892	chromoarm	204	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	7997499	7997599	AT5TE28945	.	+	ATREP3	Helitron	RC	100	short	1439	high	3196939	chromoarm	279	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	7997599	7998180	AT5TE28950	.	+	ATREP11	Helitron	RC	581	short	841	high	3196358	chromoarm	128	no-CHH	no-CHH	.	.	.	.	.
Chr5	7998180	7998289	AT5TE28955	.	+	ATREP10D	Helitron	RC	109	short	1295	high	3196249	chromoarm	19	no-CHH	no-CHH	.	.	.	.	.
Chr5	7999768	8000069	AT5TE28960	.	+	ATENSPM10	En-Spm	DNA	301	short	81	medium	3194469	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	8011637	8011895	AT5TE29000	.	+	ATHPOGON3	Pogo	DNA	258	short	118	medium	3182643	chromoarm	184	no-CHH	no-CHH	.	.	.	.	.
Chr5	8013237	8013393	AT5TE29005	.	+	ARNOLD3	MuDR	DNA	156	short	45	low	3181145	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	8027046	8027347	AT5TE29050	.	-	ATIS112A	Harbinger	DNA	301	short	173	medium	3167191	chromoarm	1113	no-CHH	no-CHH	.	.	.	.	.
Chr5	8032266	8032672	AT5TE29060	.	+	HELITRON2	Helitron	RC	406	short	194	medium	3161866	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	8037970	8038113	AT5TE29070	.	-	LIMPET1	MuDR	DNA	143	short	116	medium	3156425	chromoarm	12	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	8081561	8081823	AT5TE29230	.	-	ATCOPIA36	Copia	LTR	262	short	14	low	3112715	chromoarm	965	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	8083581	8083676	AT5TE29235	.	-	ATREP10A	Helitron	RC	95	tiny	279	high	3110862	chromoarm	133	no-CHH	no-CHH	.	.	.	.	.
Chr5	8083676	8084601	AT5TE29240	.	+	HELITRONY1B	Helitron	RC	925	short	414	high	3109937	chromoarm	228	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	8084601	8084631	AT5TE29245	.	+	ATREP5	Helitron	RC	30	tiny	624	high	3109907	chromoarm	1153	no-CHH	no-CHH	.	.	.	.	.
Chr5	8086326	8089131	AT5TE29250	.	+	ATLINE1_6	L1	LINE	2805	medium	129	medium	3105407	chromoarm	2878	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	8092165	8092196	AT5TE29260	.	+	ATHATN1	HAT	DNA	31	tiny	69	medium	3102342	chromoarm	772	no-CHH	no-CHH	.	.	.	.	.
Chr5	8092196	8092473	AT5TE29265	.	+	ATHATN7	HAT	DNA	277	short	71	medium	3102065	chromoarm	495	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	8102876	8103047	AT5TE29300	.	+	ATLINE1_5	L1	LINE	171	short	91	medium	3091491	chromoarm	1594	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	8122963	8123108	AT5TE29370	.	-	HELITRONY1C	Helitron	RC	145	short	120	medium	3071430	chromoarm	1970	no-CHH	no-CHH	.	.	.	.	.
Chr5	8123108	8123221	AT5TE29375	.	+	ATMUN1	MuDR	DNA	113	short	107	medium	3071317	chromoarm	2115	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	8123222	8123751	AT5TE29380	.	+	ATMUN1	MuDR	DNA	530	short	107	medium	3070787	chromoarm	2228	.	.	.	.	.	.	.
Chr5	8123751	8123876	AT5TE29385	.	-	HELITRONY1D	Helitron	RC	125	short	756	high	3070662	chromoarm	2168	no-CHH	no-CHH	.	.	.	.	.
Chr5	8123876	8123992	AT5TE29390	.	+	ATREP3	Helitron	RC	116	short	1439	high	3070546	chromoarm	2052	no-CHH	no-CHH	.	.	.	.	.
Chr5	8136395	8136748	AT5TE29440	.	+	BRODYAGA1A	MuDR	DNA	353	short	586	high	3057790	chromoarm	404	no-CHH	no-CHH	.	.	.	.	.
Chr5	8147005	8147607	AT5TE29480	.	-	HELITRONY1D	Helitron	RC	602	short	756	high	3046931	chromoarm	1608	no-CHH	no-CHH	.	.	.	.	.
Chr5	8147607	8148240	AT5TE29485	.	+	ATMU10	MuDR	DNA	633	short	87	medium	3046298	chromoarm	975	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	8148241	8148367	AT5TE29490	.	-	BRODYAGA1	MuDR	DNA	127	short	251	high	3046171	chromoarm	848	.	.	.	.	.	.	.
Chr5	8155763	8156685	AT5TE29520	.	+	ATCOPIA95	Copia	LTR	922	short	72	medium	3037853	chromoarm	1108	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	8160579	8161396	AT5TE29530	.	-	HELITRONY1E	Helitron	RC	817	short	447	high	3033142	chromoarm	833	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	8167996	8168101	AT5TE29550	.	-	ATENSPM2	En-Spm	DNA	105	short	114	medium	3026437	chromoarm	327	no-CHH	no-CHH	.	.	.	.	.
Chr5	8169817	8169921	AT5TE29555	.	+	BRODYAGA1	MuDR	DNA	104	short	251	high	3024617	chromoarm	2148	no-CHH	no-RdDM	.	.	.	.	.
Chr5	8169921	8170829	AT5TE29560	.	+	ARNOLDY1	MuDR	DNA	908	short	237	high	3023709	chromoarm	1764	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	8170829	8170909	AT5TE29565	.	-	ATREP3	Helitron	RC	80	tiny	1439	high	3023629	chromoarm	1684	no-CHH	no-CHH	.	.	.	.	.
Chr5	8171790	8172529	AT5TE29570	.	+	ATREP10B	Helitron	RC	739	short	491	high	3022009	chromoarm	64	no-CHH	no-CHH	.	.	.	.	.
Chr5	8172529	8172590	AT5TE29575	.	+	HELITRONY3	Helitron	RC	61	tiny	1399	high	3021948	chromoarm	3	no-CHH	no-CHH	.	.	.	.	.
Chr5	8177388	8178552	AT5TE29585	.	+	ATREP5	Helitron	RC	1164	short	624	high	3015986	chromoarm	1565	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	8178552	8179475	AT5TE29590	.	-	SIMPLEGUY1	Harbinger	DNA	923	short	116	medium	3015063	chromoarm	642	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	8179475	8179640	AT5TE29595	.	-	HELITRONY3	Helitron	RC	165	short	1399	high	3014898	chromoarm	477	no-RdDM	no-CHH	.	.	.	.	.
Chr5	8184870	8185420	AT5TE29605	.	+	HELITRONY1E	Helitron	RC	550	short	447	high	3009118	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	8185083	8185313	AT5TE29610	.	+	DT1	Mariner	DNA	230	short	123	medium	3009225	chromoarm	0	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	8191927	8192247	AT5TE29630	.	+	VANDAL6	MuDR	DNA	320	short	89	medium	3002291	chromoarm	572	no-CHH	no-CHH	.	.	.	.	.
Chr5	8192719	8193068	AT5TE29635	.	-	ATREP11A	Helitron	RC	349	short	95	medium	3001470	chromoarm	1364	no-CHH	no-CHH	.	.	.	.	.
Chr5	8197248	8197607	AT5TE29645	.	-	HELITRONY1D	Helitron	RC	359	short	756	high	2996931	chromoarm	129	no-CHH	no-CHH	.	.	.	.	.
Chr5	8198525	8199374	AT5TE29650	.	-	HELITRONY3	Helitron	RC	849	short	1399	high	2995164	chromoarm	382	no-CHH	no-CHH	.	.	.	.	.
Chr5	8200920	8201755	AT5TE29655	.	-	HELITRONY1B	Helitron	RC	835	short	414	high	2992783	chromoarm	147	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	8201755	8201834	AT5TE29660	.	+	HELITRONY1B	Helitron	RC	79	tiny	414	high	2992704	chromoarm	982	no-CHH	no-CHH	.	.	.	.	.
Chr5	8204416	8204501	AT5TE29665	.	+	HELITRONY1D	Helitron	RC	85	tiny	756	high	2990037	chromoarm	0	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	8204501	8205214	AT5TE29670	.	+	ATREP15	Helitron	RC	713	short	1003	high	2989324	chromoarm	0	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	8205214	8205242	AT5TE29675	.	+	ATREP11A	Helitron	RC	28	tiny	95	medium	2989296	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	8206750	8210305	AT5TE29680	.	+	ATDNA1T9A	MuDR	DNA	3555	medium	36	low	2984233	chromoarm	1124	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	8209538	8209300	-	transcript_id-"50752306-aba2-4e48-853a-b6435a6458ef|9"
Chr5	8215121	8216116	AT5TE29690	.	-	SIMPLEGUY1	Harbinger	DNA	995	short	116	medium	2978422	chromoarm	1760	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	8216116	8216174	AT5TE29695	.	+	ATREP15	Helitron	RC	58	tiny	1003	high	2978364	chromoarm	1702	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	8216174	8217121	AT5TE29700	.	+	ATREP3	Helitron	RC	947	short	1439	high	2977417	chromoarm	755	no-CHH	no-CHH	.	.	.	.	.
Chr5	8217121	8217288	AT5TE29705	.	-	ATREP10D	Helitron	RC	167	short	1295	high	2977250	chromoarm	588	no-CHH	no-CHH	.	.	.	.	.
Chr5	8220725	8220997	AT5TE29715	.	+	ATLINE1_3A	L1	LINE	272	short	160	medium	2973541	chromoarm	1259	no-CHH	no-CHH	.	.	.	.	.
Chr5	8221099	8221169	AT5TE29720	.	+	ATREP7	Helitron	RC	71	tiny	164	medium	2973369	chromoarm	1632	.	.	.	.	.	.	.
Chr5	8223735	8224028	AT5TE29725	.	+	ATREP8	Helitron	RC	293	short	75	medium	2970510	chromoarm	1832	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	8224145	8224471	AT5TE29730	.	-	HELITRONY3	Helitron	RC	326	short	1399	high	2970067	chromoarm	1389	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	8226892	8227023	AT5TE29735	.	+	RathE1_cons	.	RathE1_cons	131	short	213	high	2967515	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	8227702	8228844	AT5TE29740	.	+	ATREP10D	Helitron	RC	1142	short	1295	high	2965694	chromoarm	151	no-CHH	no-CHH	.	.	.	.	.
Chr5	8238254	8238637	AT5TE29770	.	-	BRODYAGA1A	MuDR	DNA	383	short	586	high	2955901	chromoarm	143	no-CHH	no-CHH	.	.	.	.	.
Chr5	8247769	8249591	AT5TE29800	.	+	VANDAL17	MuDR	DNA	1822	short	178	medium	2944947	chromoarm	1786	no-CHH	no-CHH	.	.	.	.	.
Chr5	8249591	8249665	AT5TE29805	.	+	VANDAL17	MuDR	DNA	74	tiny	178	medium	2944873	chromoarm	1712	no-CHH	no-CHH	.	.	.	.	.
Chr5	8272768	8272943	AT5TE29890	.	-	RathE1_cons	.	RathE1_cons	175	short	213	high	2921595	chromoarm	1693	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	8279940	8280208	AT5TE29920	.	-	ATREP15	Helitron	RC	268	short	1003	high	2914330	chromoarm	5	no-CHH	no-CHH	.	.	.	.	.
Chr5	8280208	8280253	AT5TE29925	.	+	HELITRONY3	Helitron	RC	45	tiny	1399	high	2914285	chromoarm	273	no-CHH	no-CHH	.	.	.	.	.
Chr5	8280253	8280364	AT5TE29930	.	+	ATREP11	Helitron	RC	111	short	841	high	2914174	chromoarm	318	no-CHH	no-CHH	.	.	.	.	.
Chr5	8280364	8281902	AT5TE29935	.	+	ATREP11	Helitron	RC	1538	short	841	high	2912636	chromoarm	382	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	8281902	8282214	AT5TE29940	.	+	HELITRONY1C	Helitron	RC	312	short	120	medium	2912324	chromoarm	70	no-CHH	no-CHH	.	.	.	.	.
Chr5	8282214	8282314	AT5TE29945	.	+	ATREP3	Helitron	RC	100	short	1439	high	2912224	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	8282314	8282398	AT5TE29950	.	+	ATREP9	Helitron	RC	84	tiny	201	high	2912140	chromoarm	0	no-RdDM	no-CHH	.	.	.	.	.
Chr5	8288650	8289204	AT5TE29970	.	-	HELITRONY1C	Helitron	RC	554	short	120	medium	2905334	chromoarm	999	no-CHH	no-CHH	.	.	.	.	.
Chr5	8290086	8290240	AT5TE29975	.	-	ATREP3	Helitron	RC	154	short	1439	high	2904298	chromoarm	2435	no-CHH	no-CHH	.	.	.	.	.
Chr5	8290629	8290813	AT5TE29980	.	-	RathE2_cons	.	RathE2_cons	184	short	74	medium	2903725	chromoarm	2978	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	8292955	8293423	AT5TE29985	.	+	HELITRONY1C	Helitron	RC	468	short	120	medium	2901115	chromoarm	1821	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	8297184	8297281	AT5TE29995	.	-	ATHATN6	HAT	DNA	97	tiny	43	low	2897257	chromoarm	46	no-CHH	no-CHH	.	.	.	.	.
Chr5	8312057	8312111	AT5TE30040	.	-	ATREP3	Helitron	RC	54	tiny	1439	high	2882427	chromoarm	290	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	8312111	8313095	AT5TE30045	.	-	ATREP4	Helitron	RC	984	short	832	high	2881443	chromoarm	344	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	8313097	8314181	AT5TE30050	.	+	BOMZH1	MuDR	DNA	1084	short	28	low	2880357	chromoarm	723	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	8314181	8314823	AT5TE30055	.	+	ATREP15	Helitron	RC	642	short	1003	high	2879715	chromoarm	81	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	8315335	8316426	AT5TE30060	.	+	ATREP10D	Helitron	RC	1091	short	1295	high	2878112	chromoarm	89	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	8320008	8320376	AT5TE30070	.	+	ATHATN4	HAT	DNA	368	short	56	medium	2874162	chromoarm	181	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	8322423	8322460	AT5TE30075	.	+	ATHATN1	HAT	DNA	37	tiny	69	medium	2872078	chromoarm	879	no-CHH	no-CHH	.	.	.	.	.
Chr5	8332217	8332384	AT5TE30110	.	-	ATHATN6	HAT	DNA	167	short	43	low	2862154	chromoarm	305	no-CHH	no-CHH	.	.	.	.	.
Chr5	8343158	8343193	AT5TE30150	.	+	ATREP15	Helitron	RC	35	tiny	1003	high	2851345	chromoarm	245	PolIV-and-RDR6-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	8343193	8343929	AT5TE30155	.	+	ATREP11	Helitron	RC	736	short	841	high	2850609	chromoarm	280	no-CHH	no-CHH	.	.	.	.	.
Chr5	8343929	8343977	AT5TE30160	.	+	ATREP15	Helitron	RC	48	tiny	1003	high	2850561	chromoarm	1016	no-CHH	no-CHH	.	.	.	.	.
Chr5	8353116	8353201	AT5TE30190	.	+	HELITRONY3	Helitron	RC	85	tiny	1399	high	2841337	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	8353201	8354673	AT5TE30195	.	-	ATREP3	Helitron	RC	1472	short	1439	high	2839865	chromoarm	71	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	8354673	8354730	AT5TE30200	.	+	HELITRONY3	Helitron	RC	57	tiny	1399	high	2839808	chromoarm	84	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	8358981	8359565	AT5TE30210	.	-	ATREP11	Helitron	RC	584	short	841	high	2834973	chromoarm	108	no-CHH	no-CHH	.	.	.	.	.
Chr5	8362164	8362211	AT5TE30215	.	-	ATREP15	Helitron	RC	48	tiny	1003	high	2832327	chromoarm	1619	.	.	.	.	.	.	.
Chr5	8362211	8362455	AT5TE30220	.	-	ATREP9	Helitron	RC	244	short	201	high	2832083	chromoarm	1375	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	8362455	8362557	AT5TE30225	.	+	HELITRONY3	Helitron	RC	102	short	1399	high	2831981	chromoarm	1273	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	8362557	8363404	AT5TE30230	.	+	ATHPOGON1	Pogo	DNA	847	short	174	medium	2831134	chromoarm	426	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	8363404	8363630	AT5TE30235	.	+	HELITRONY3	Helitron	RC	226	short	1399	high	2830908	chromoarm	200	no-CHH	no-CHH	.	.	.	.	.
Chr5	8363630	8363892	AT5TE30240	.	-	ATREP3	Helitron	RC	262	short	1439	high	2830646	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	8365209	8365237	AT5TE30245	.	+	ATCOPIA91	Copia	LTR	28	tiny	7	low	2829301	chromoarm	173	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	8365237	8365472	AT5TE30250	.	+	ATCOPIA71	Copia	LTR	235	short	9	low	2829066	chromoarm	201	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	8368941	8369115	AT5TE30260	.	+	ATLINE1A	L1	LINE	174	short	289	high	2825423	chromoarm	179	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	8369960	8370682	AT5TE30265	.	-	HELITRONY3	Helitron	RC	722	short	1399	high	2823856	chromoarm	94	no-CHH	no-CHH	.	.	.	.	.
Chr5	8373214	8373412	AT5TE30270	.	-	ATLINE1_3A	L1	LINE	198	short	160	medium	2821126	chromoarm	481	no-CHH	no-CHH	ExpressedAndAnnotated	8373902	8373084	-	transcript_id-"66d426fa-35e8-4fe2-aa25-cf0fa03a0f80|3"
Chr5	8374284	8374969	AT5TE30275	.	+	ATLINE1_1	L1	LINE	685	short	61	medium	2819569	chromoarm	1551	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	8374969	8375660	AT5TE30280	.	+	HELITRONY3	Helitron	RC	691	short	1399	high	2818878	chromoarm	2236	no-CHH	no-CHH	.	.	.	.	.
Chr5	8375660	8376326	AT5TE30285	.	-	TNAT1A	.	DNA	666	short	162	medium	2818212	chromoarm	2637	no-CHH	no-CHH	.	.	.	.	.
Chr5	8376326	8376436	AT5TE30290	.	+	HELITRONY2	Helitron	RC	110	short	198	medium	2818102	chromoarm	2527	no-CHH	no-CHH	.	.	.	.	.
Chr5	8376710	8376733	AT5TE30295	.	-	ATN9_1	MuDR	DNA	23	tiny	65	medium	2817805	chromoarm	2230	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	8376733	8377486	AT5TE30300	.	-	BRODYAGA2	MuDR	DNA	753	short	525	high	2817052	chromoarm	1477	no-CHH	no-CHH	.	.	.	.	.
Chr5	8378518	8378606	AT5TE30305	.	+	RathE1_cons	.	RathE1_cons	88	tiny	213	high	2815932	chromoarm	357	no-CHH	no-CHH	.	.	.	.	.
Chr5	8382511	8382829	AT5TE30315	.	+	HELITRONY3	Helitron	RC	318	short	1399	high	2811709	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	8391510	8392023	AT5TE30340	.	+	HELITRONY1D	Helitron	RC	513	short	756	high	2802515	chromoarm	35	no-CHH	no-CHH	.	.	.	.	.
Chr5	8400176	8400295	AT5TE30370	.	+	ATCOPIA70	Copia	LTR	119	short	8	low	2794243	chromoarm	1909	PolIV-and-RDR6-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	8400295	8400681	AT5TE30375	.	-	ATCOPIA70	Copia	LTR	386	short	8	low	2793857	chromoarm	1523	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	8403820	8403898	AT5TE30385	.	-	ATENSPM10	En-Spm	DNA	78	tiny	81	medium	2790640	chromoarm	554	no-CHH	no-CHH	.	.	.	.	.
Chr5	8403982	8404054	AT5TE30390	.	+	ATREP10D	Helitron	RC	72	tiny	1295	high	2790484	chromoarm	716	no-CHH	no-CHH	.	.	.	.	.
Chr5	8404054	8405675	AT5TE30395	.	-	HELITRONY3	Helitron	RC	1621	short	1399	high	2788863	chromoarm	138	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	8404442	8405117	AT5TE30400	.	+	ATN9_1	MuDR	DNA	675	short	65	medium	2789421	chromoarm	696	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	8420094	8420528	AT5TE30460	.	-	BRODYAGA1A	MuDR	DNA	434	short	586	high	2774010	chromoarm	76	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	8420528	8420563	AT5TE30465	.	-	ATHAT10	HAT	DNA	35	tiny	35	low	2773975	chromoarm	510	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	8423655	8424724	AT5TE30475	.	+	HELITRONY3	Helitron	RC	1069	short	1399	high	2769814	chromoarm	313	no-CHH	no-CHH	.	.	.	.	.
Chr5	8424724	8424752	AT5TE30480	.	+	ATREP15	Helitron	RC	28	tiny	1003	high	2769786	chromoarm	1382	no-CHH	no-CHH	.	.	.	.	.
Chr5	8428030	8428242	AT5TE30490	.	-	ATDNAI27T9C	MuDR	DNA	212	short	108	medium	2766296	chromoarm	334	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	8446239	8447266	AT5TE30560	.	-	SIMPLEGUY1	Harbinger	DNA	1027	short	116	medium	2747272	chromoarm	1613	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	8447275	8447463	AT5TE30565	.	+	ATENSPM5	En-Spm	DNA	188	short	111	medium	2747075	chromoarm	1416	no-CHH	no-CHH	.	.	.	.	.
Chr5	8451432	8451489	AT5TE30575	.	+	ATDNA2T9C	MuDR	DNA	57	tiny	242	high	2743049	chromoarm	386	no-CHH	no-CHH	.	.	.	.	.
Chr5	8451489	8451571	AT5TE30580	.	-	HELITRONY1D	Helitron	RC	82	tiny	756	high	2742967	chromoarm	443	no-CHH	no-CHH	.	.	.	.	.
Chr5	8451571	8452280	AT5TE30585	.	+	ATREP15	Helitron	RC	709	short	1003	high	2742258	chromoarm	525	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	8499836	8500527	AT5TE30760	.	-	ATREP11	Helitron	RC	691	short	841	high	2694011	chromoarm	185	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	8503396	8503556	AT5TE30770	.	+	ATENSPM6	En-Spm	DNA	160	short	151	medium	2690982	chromoarm	1552	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	8503556	8504684	AT5TE30775	.	+	ATENSPM2	En-Spm	DNA	1128	short	114	medium	2689854	chromoarm	1712	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr5	8504706	8505096	AT5TE30780	.	-	ATREP3	Helitron	RC	390	short	1439	high	2689442	chromoarm	2686	no-CHH	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	8510063	8510199	AT5TE30790	.	-	ATLINEIII	L1	LINE	136	short	196	medium	2684339	chromoarm	1174	no-CHH	no-CHH	.	.	.	.	.
Chr5	8511091	8511269	AT5TE30795	.	+	RathE3_cons	.	RathE3_cons	178	short	104	medium	2683269	chromoarm	806	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	8530137	8530210	AT5TE30860	.	+	HELITRONY1A	Helitron	RC	73	tiny	271	high	2664328	chromoarm	1015	no-CHH	no-CHH	.	.	.	.	.
Chr5	8530225	8530321	AT5TE30865	.	-	ATREP13	Helitron	RC	96	tiny	106	medium	2664217	chromoarm	904	no-CHH	no-CHH	.	.	.	.	.
Chr5	8530321	8530829	AT5TE30870	.	-	ATTIR16T3A	.	DNA	508	short	106	medium	2663709	chromoarm	396	no-CHH	no-CHH	.	.	.	.	.
Chr5	8530829	8530896	AT5TE30875	.	+	HELITRONY3	Helitron	RC	67	tiny	1399	high	2663642	chromoarm	329	no-CHH	no-CHH	.	.	.	.	.
Chr5	8538940	8539122	AT5TE30900	.	+	ATREP10A	Helitron	RC	182	short	279	high	2655416	chromoarm	924	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	8547549	8547712	AT5TE30930	.	-	ATENSPM6	En-Spm	DNA	163	short	151	medium	2646826	chromoarm	626	no-CHH	no-CHH	ExpressedAndAnnotated	8547324	8547915	+	transcript_id-"9b1c2970-6451-4699-9a0b-b6107befb223|4"
Chr5	8549544	8551167	AT5TE30935	.	-	ATHILA	Gypsy	LTR	1623	short	198	medium	2643371	chromoarm	1323	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	8551167	8551244	AT5TE30940	.	-	ATHILA6B	Gypsy	LTR	77	tiny	134	medium	2643294	chromoarm	1246	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	8553738	8553968	AT5TE30945	.	+	ATDNAI27T9C	MuDR	DNA	230	short	108	medium	2640570	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	8555574	8555599	AT5TE30950	.	-	ATREP10B	Helitron	RC	25	tiny	491	high	2638939	chromoarm	1500	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	8555599	8557207	AT5TE30955	.	-	HELITRONY1C	Helitron	RC	1608	short	120	medium	2637331	chromoarm	1149	no-CHH	no-CHH	.	.	.	.	.
Chr5	8557207	8557767	AT5TE30960	.	-	ATREP11	Helitron	RC	560	short	841	high	2636771	chromoarm	589	no-CHH	no-CHH	.	.	.	.	.
Chr5	8559496	8559733	AT5TE30965	.	+	ATREP3	Helitron	RC	237	short	1439	high	2634805	chromoarm	324	no-CHH	no-CHH	.	.	.	.	.
Chr5	8559733	8560321	AT5TE30970	.	-	HELITRON4	Helitron	RC	588	short	199	medium	2634217	chromoarm	561	PolIV-and-RDR6-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	8560321	8560441	AT5TE30975	.	+	ATREP3	Helitron	RC	120	short	1439	high	2634097	chromoarm	1149	no-CHH	no-CHH	.	.	.	.	.
Chr5	8560634	8561432	AT5TE30980	.	+	BRODYAGA2	MuDR	DNA	798	short	525	high	2633106	chromoarm	1462	no-CHH	no-CHH	.	.	.	.	.
Chr5	8571573	8577832	AT5TE31020	.	+	ATLINE1_6	L1	LINE	6259	long	129	medium	2616706	chromoarm	1313	no-RdDM	no-RdDM	ExpressedAndAnnotated	8571680	8571496	-	transcript_id-"e0b61371-90b1-45c3-b382-869b30382808|3"
Chr5	8577869	8578115	AT5TE31025	.	-	ATREP9	Helitron	RC	246	short	201	high	2616423	chromoarm	6549	no-CHH	no-CHH	.	.	.	.	.
Chr5	8578115	8579625	AT5TE31030	.	-	HELITRONY3	Helitron	RC	1510	short	1399	high	2614913	chromoarm	5039	no-CHH	no-CHH	.	.	.	.	.
Chr5	8586682	8587035	AT5TE31060	.	+	ATREP3	Helitron	RC	353	short	1439	high	2607503	chromoarm	1622	no-CHH	no-CHH	.	.	.	.	.
Chr5	8587639	8588379	AT5TE31065	.	-	ATREP5	Helitron	RC	740	short	624	high	2606159	chromoarm	945	no-CHH	no-CHH	.	.	.	.	.
Chr5	8588379	8588437	AT5TE31070	.	-	HELITRONY1E	Helitron	RC	58	tiny	447	high	2606101	chromoarm	887	no-CHH	no-CHH	.	.	.	.	.
Chr5	8594143	8594374	AT5TE31090	.	+	RathE2_cons	.	RathE2_cons	232	short	74	medium	2600164	chromoarm	541	.	.	.	.	.	.	.
Chr5	8596469	8597180	AT5TE31095	.	-	ATREP11	Helitron	RC	711	short	841	high	2597358	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	8598228	8599374	AT5TE31100	.	+	ATREP3	Helitron	RC	1146	short	1439	high	2595164	chromoarm	467	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	8599374	8599429	AT5TE31105	.	-	ATHPOGON1	Pogo	DNA	55	tiny	174	medium	2595109	chromoarm	558	no-CHH	no-CHH	.	.	.	.	.
Chr5	8599714	8599878	AT5TE31110	.	-	ATHILA4D_LTR	Gypsy	LTR	164	short	106	medium	2594660	chromoarm	109	no-CHH	no-CHH	.	.	.	.	.
Chr5	8601304	8601499	AT5TE31115	.	-	HELITRONY1B	Helitron	RC	195	short	414	high	2593039	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	8601499	8601780	AT5TE31120	.	-	ATTIRX1D	.	DNA	281	short	28	low	2592758	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	8601780	8602757	AT5TE31125	.	-	ATREP1	Helitron	RC	977	short	498	high	2591781	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	8602757	8602888	AT5TE31130	.	+	ARNOLDY2	MuDR	DNA	131	short	288	high	2591650	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	8611530	8611970	AT5TE31160	.	-	ATLINE1A	L1	LINE	440	short	289	high	2582568	chromoarm	55	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	8611970	8613457	AT5TE31165	.	+	HELITRONY3	Helitron	RC	1487	short	1399	high	2581081	chromoarm	495	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	8613457	8613638	AT5TE31170	.	-	ATREP3	Helitron	RC	181	short	1439	high	2580900	chromoarm	327	no-CHH	no-RdDM	.	.	.	.	.
Chr5	8613638	8613683	AT5TE31175	.	+	ATREP3	Helitron	RC	45	tiny	1439	high	2580855	chromoarm	282	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	8615123	8615743	AT5TE31180	.	+	ATREP1	Helitron	RC	620	short	498	high	2578795	chromoarm	265	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	8619512	8619884	AT5TE31190	.	-	ATREP19	.	DNA	372	short	189	medium	2574654	chromoarm	47	no-CHH	no-CHH	.	.	.	.	.
Chr5	8624510	8629386	AT5TE31200	.	-	ATCOPIA22	Copia	LTR	4876	medium	14	low	2565152	chromoarm	545	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	8630630	8630793	AT5TE31205	.	-	ATREP4	Helitron	RC	163	short	832	high	2563745	chromoarm	1228	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	8630793	8630878	AT5TE31210	.	-	HELITRONY1A	Helitron	RC	85	tiny	271	high	2563660	chromoarm	1143	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr5	8640199	8640656	AT5TE31240	.	+	BRODYAGA1A	MuDR	DNA	457	short	586	high	2553882	chromoarm	215	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	8640656	8640680	AT5TE31245	.	-	ATREP10B	Helitron	RC	24	tiny	491	high	2553858	chromoarm	580	no-CHH	no-CHH	.	.	.	.	.
Chr5	8653508	8653557	AT5TE31290	.	+	ATREP15	Helitron	RC	49	tiny	1003	high	2540981	chromoarm	462	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	8653557	8653596	AT5TE31295	.	-	HELITRONY3	Helitron	RC	39	tiny	1399	high	2540942	chromoarm	511	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	8653596	8654540	AT5TE31300	.	+	ARNOLDY2	MuDR	DNA	944	short	288	high	2539998	chromoarm	550	no-CHH	no-CHH	.	.	.	.	.
Chr5	8664954	8665482	AT5TE31340	.	+	BRODYAGA1A	MuDR	DNA	528	short	586	high	2529056	chromoarm	522	no-RdDM	no-CHH	.	.	.	.	.
Chr5	8670799	8676907	AT5TE31350	.	+	HELITRONY3	Helitron	RC	6108	long	1399	high	2517631	chromoarm	0	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	8674581,8674530	8673881,8673907	-,-	transcript_id-"145b40da-0dbd-4738-ad38-e222f1ab4588|4",transcript_id-"fa162e02-ba5a-4c55-9438-f3a5b513d8ec|5"
Chr5	8671276	8671721	AT5TE31355	.	+	ATREP1	Helitron	RC	445	short	498	high	2522817	chromoarm	0	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	8674813	8675180	AT5TE31365	.	-	HELITRONY3	Helitron	RC	367	short	1399	high	2519358	chromoarm	256	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	8682513	8682910	AT5TE31390	.	+	ATREP10D	Helitron	RC	397	short	1295	high	2511628	chromoarm	455	no-CHH	no-CHH	.	.	.	.	.
Chr5	8682910	8683866	AT5TE31395	.	+	ATREP3	Helitron	RC	956	short	1439	high	2510672	chromoarm	852	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	8683867	8684009	AT5TE31400	.	+	HELITRONY2	Helitron	RC	143	short	198	medium	2510529	chromoarm	1808	.	.	.	.	.	.	.
Chr5	8684082	8684722	AT5TE31405	.	-	ATHATN7	HAT	DNA	640	short	71	medium	2509816	chromoarm	2024	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	8684760	8685056	AT5TE31410	.	+	BRODYAGA1A	MuDR	DNA	296	short	586	high	2509482	chromoarm	2467	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	8690673	8690712	AT5TE31430	.	-	ATCOPIA97	Copia	LTR	39	tiny	10	low	2503826	chromoarm	2442	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	8690713	8691021	AT5TE31435	.	-	ATCOPIA35	Copia	LTR	308	short	22	low	2503517	chromoarm	2235	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	8697411	8697543	AT5TE31450	.	+	RathE3_cons	.	RathE3_cons	132	short	104	medium	2496995	chromoarm	1190	no-CHH	no-CHH	.	.	.	.	.
Chr5	8699891	8700413	AT5TE31455	.	-	ATDNA2T9C	MuDR	DNA	522	short	242	high	2494125	chromoarm	3670	no-CHH	no-CHH	.	.	.	.	.
Chr5	8701017	8701251	AT5TE31460	.	+	ATENSPM2	En-Spm	DNA	234	short	114	medium	2493287	chromoarm	4796	no-CHH	no-CHH	.	.	.	.	.
Chr5	8701307	8701526	AT5TE31465	.	-	ATENSPM2	En-Spm	DNA	219	short	114	medium	2493012	chromoarm	5086	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	8701742	8701840	AT5TE31470	.	+	RathE3_cons	.	RathE3_cons	99	tiny	104	medium	2492698	chromoarm	5166	.	.	.	.	.	.	.
Chr5	8702009	8702759	AT5TE31475	.	+	ARNOLDY2	MuDR	DNA	750	short	288	high	2491779	chromoarm	4247	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	8702813	8703493	AT5TE31480	.	-	ATLINEIII	L1	LINE	680	short	196	medium	2491045	chromoarm	3513	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	8718855	8718864	AT5TE31540	.	-	TA11	L1	LINE	10	tiny	157	medium	2475674	chromoarm	985	.	.	.	.	.	.	.
Chr5	8718864	8722393	AT5TE31545	.	-	TA11	L1	LINE	3529	medium	157	medium	2472145	chromoarm	995	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	8720047	8720087	AT5TE31550	.	-	ATLINE1_4	L1	LINE	40	tiny	102	medium	2474451	chromoarm	2178	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	8722404	8723471	AT5TE31555	.	-	TA11	L1	LINE	1067	short	157	medium	2471067	chromoarm	584	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	8723471	8723507	AT5TE31560	.	-	TA11	L1	LINE	36	tiny	157	medium	2471031	chromoarm	548	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	8727111	8728101	AT5TE31570	.	-	HELITRONY3	Helitron	RC	990	short	1399	high	2466437	chromoarm	1646	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	8728624	8728806	AT5TE31575	.	-	HELITRONY3	Helitron	RC	182	short	1399	high	2465732	chromoarm	3159	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	8728806	8729064	AT5TE31580	.	+	DT1	Mariner	DNA	258	short	123	medium	2465474	chromoarm	3341	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	8730730	8731781	AT5TE31585	.	+	HELITRONY1B	Helitron	RC	1051	short	414	high	2462757	chromoarm	4426	no-CHH	no-CHH	.	.	.	.	.
Chr5	8731781	8731821	AT5TE31590	.	-	HELITRONY1D	Helitron	RC	40	tiny	756	high	2462717	chromoarm	4386	no-CHH	no-CHH	.	.	.	.	.
Chr5	8735153	8735205	AT5TE31600	.	+	ATREP10D	Helitron	RC	52	tiny	1295	high	2459333	chromoarm	1002	no-CHH	no-CHH	.	.	.	.	.
Chr5	8735205	8735380	AT5TE31605	.	+	ATREP10B	Helitron	RC	175	short	491	high	2459158	chromoarm	827	no-CHH	no-CHH	.	.	.	.	.
Chr5	8735380	8735943	AT5TE31610	.	-	ATREP15	Helitron	RC	563	short	1003	high	2458595	chromoarm	264	no-CHH	no-CHH	.	.	.	.	.
Chr5	8744284	8746716	AT5TE31640	.	-	ATREP3	Helitron	RC	2432	medium	1439	high	2447822	chromoarm	62	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	8746716	8746891	AT5TE31645	.	+	ATREP1	Helitron	RC	175	short	498	high	2447647	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	8748623	8748926	AT5TE31650	.	+	ATREP3	Helitron	RC	303	short	1439	high	2445612	chromoarm	847	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	8748926	8749501	AT5TE31655	.	+	ATREP2	Helitron	RC	575	short	164	medium	2445037	chromoarm	272	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	8749501	8749778	AT5TE31660	.	+	ATREP1	Helitron	RC	277	short	498	high	2444760	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	8762763	8762807	AT5TE31710	.	+	ATHPOGO	Pogo	DNA	44	tiny	25	low	2431731	chromoarm	761	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	8762807	8764031	AT5TE31715	.	+	ATREP11	Helitron	RC	1224	short	841	high	2430507	chromoarm	805	no-CHH	no-CHH	.	.	.	.	.
Chr5	8764031	8764173	AT5TE31720	.	+	HELITRONY3	Helitron	RC	142	short	1399	high	2430365	chromoarm	2029	no-CHH	no-CHH	.	.	.	.	.
Chr5	8765323	8765380	AT5TE31725	.	+	HELITRONY3	Helitron	RC	57	tiny	1399	high	2429158	chromoarm	3321	no-CHH	no-CHH	.	.	.	.	.
Chr5	8765380	8765434	AT5TE31730	.	+	ATREP15	Helitron	RC	54	tiny	1003	high	2429104	chromoarm	3378	no-CHH	no-CHH	.	.	.	.	.
Chr5	8765434	8767922	AT5TE31735	.	+	ATREP3	Helitron	RC	2488	medium	1439	high	2426616	chromoarm	3432	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	8767922	8768011	AT5TE31740	.	+	ATREP3	Helitron	RC	89	tiny	1439	high	2426527	chromoarm	5870	no-CHH	no-CHH	.	.	.	.	.
Chr5	8769449	8770675	AT5TE31745	.	+	SIMPLEHAT2	HAT	DNA	1226	short	73	medium	2423863	chromoarm	3206	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	8770675	8771080	AT5TE31750	.	+	HELITRONY3	Helitron	RC	405	short	1399	high	2423458	chromoarm	2801	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	8783328	8783741	AT5TE31800	.	-	ATLANTYS2	Gypsy	LTR	413	short	179	medium	2410797	chromoarm	235	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	8785258	8785368	AT5TE31805	.	+	ATCOPIA24	Copia	LTR	110	short	27	low	2409170	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	8797177	8798010	AT5TE31840	.	+	ATREP10B	Helitron	RC	833	short	491	high	2396528	chromoarm	295	no-CHH	no-CHH	.	.	.	.	.
Chr5	8802709	8803123	AT5TE31850	.	+	BRODYAGA2	MuDR	DNA	415	short	525	high	2391415	chromoarm	375	.	.	.	.	.	.	.
Chr5	8802833	8803061	AT5TE31855	.	-	ATLINE1A	L1	LINE	229	short	289	high	2391477	chromoarm	499	.	.	.	.	.	.	.
Chr5	8804766	8804905	AT5TE31860	.	+	ATLINE1_3A	L1	LINE	139	short	160	medium	2389633	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	8805912	8806043	AT5TE31865	.	-	RathE1_cons	.	RathE1_cons	131	short	213	high	2388495	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	8808022	8809339	AT5TE31870	.	-	ATREP3	Helitron	RC	1317	short	1439	high	2385199	chromoarm	475	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr5	8809339	8810410	AT5TE31875	.	+	ATREP11	Helitron	RC	1071	short	841	high	2384128	chromoarm	1792	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	8812148	8812197	AT5TE31880	.	+	ATREP10D	Helitron	RC	49	tiny	1295	high	2382341	chromoarm	3032	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	8812197	8827334	AT5TE31885	.	-	ARNOLDY1	MuDR	DNA	15137	long	237	high	2367204	chromoarm	0	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	8823153,8823153	8824484,8824591	+,+	transcript_id-"513ccc65-b2d3-486d-8c39-5659cd9d18b3|3",transcript_id-"774dbc83-0790-4d8f-81c7-2c181cd0857d|3"
Chr5	8813449	8813488	AT5TE31890	.	+	HELITRONY3	Helitron	RC	39	tiny	1399	high	2381050	chromoarm	0	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	8813500	8814159	AT5TE31895	.	+	ATREP11	Helitron	RC	659	short	841	high	2380379	chromoarm	0	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	8814159	8814232	AT5TE31900	.	+	HELITRONY3	Helitron	RC	73	tiny	1399	high	2380306	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	8818112	8818865	AT5TE31910	.	+	ATREP10B	Helitron	RC	753	short	491	high	2375673	chromoarm	546	no-CHH	no-CHH	.	.	.	.	.
Chr5	8818865	8818936	AT5TE31915	.	+	ATREP1	Helitron	RC	71	tiny	498	high	2375602	chromoarm	1299	no-CHH	no-CHH	.	.	.	.	.
Chr5	8819293	8820206	AT5TE31920	.	+	ATREP3	Helitron	RC	913	short	1439	high	2374332	chromoarm	430	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	8819461	8820010	AT5TE31925	.	+	ATHPOGON1	Pogo	DNA	549	short	174	medium	2374528	chromoarm	626	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	8822592	8822959	AT5TE31930	.	+	BRODYAGA1A	MuDR	DNA	367	short	586	high	2371579	chromoarm	323	no-CHH	DCL3-RdDM	.	.	.	.	.
Chr5	8826020	8826310	AT5TE31940	.	+	ATREP4	Helitron	RC	290	short	832	high	2368228	chromoarm	1688	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	8827334	8828643	AT5TE31945	.	-	ARNOLDY1	MuDR	DNA	1309	short	237	high	2365895	chromoarm	3002	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	8827388	8828357	AT5TE31950	.	+	ARNOLDY2	MuDR	DNA	969	short	288	high	2366181	chromoarm	3056	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	8828357	8828395	AT5TE31955	.	+	ARNOLDY2	MuDR	DNA	38	tiny	288	high	2366143	chromoarm	3296	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	8829202	8829488	AT5TE31960	.	+	HELITRON1	Helitron	RC	286	short	130	medium	2365050	chromoarm	2203	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	8830621	8830812	AT5TE31965	.	-	BRODYAGA2	MuDR	DNA	191	short	525	high	2363726	chromoarm	879	no-CHH	no-CHH	.	.	.	.	.
Chr5	8830812	8831731	AT5TE31970	.	-	ATREP11	Helitron	RC	919	short	841	high	2362807	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	8833575	8834068	AT5TE31975	.	+	ATCOPIA32B	Copia	LTR	493	short	10	low	2360470	chromoarm	138	no-CHH	no-CHH	.	.	.	.	.
Chr5	8834098	8834441	AT5TE31980	.	+	ATCOPIA13	Copia	LTR	343	short	35	low	2360097	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	8840883	8840924	AT5TE32000	.	+	HELITRONY1D	Helitron	RC	41	tiny	756	high	2353614	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	8840924	8841415	AT5TE32005	.	+	HELITRON4	Helitron	RC	491	short	199	medium	2353123	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	8841415	8841435	AT5TE32010	.	-	ATREP10A	Helitron	RC	20	tiny	279	high	2353103	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	8846240	8846344	AT5TE32020	.	+	HELITRON1	Helitron	RC	104	short	130	medium	2348194	chromoarm	1036	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	8846654	8847012	AT5TE32025	.	-	ATREP5	Helitron	RC	358	short	624	high	2347526	chromoarm	1450	no-RdDM	no-CHH	.	.	.	.	.
Chr5	8847012	8847741	AT5TE32030	.	-	HELITRONY1D	Helitron	RC	729	short	756	high	2346797	chromoarm	807	no-CHH	no-CHH	.	.	.	.	.
Chr5	8847741	8847765	AT5TE32035	.	+	ATREP3	Helitron	RC	24	tiny	1439	high	2346773	chromoarm	783	no-CHH	RDR6-RdDM	.	.	.	.	.
Chr5	8847766	8847814	AT5TE32040	.	+	ATREP10A	Helitron	RC	49	tiny	279	high	2346724	chromoarm	734	.	.	.	.	.	.	.
Chr5	8850222	8850248	AT5TE32045	.	-	ATHATN1	HAT	DNA	26	tiny	69	medium	2344290	chromoarm	1002	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	8850534	8850643	AT5TE32050	.	-	RathE3_cons	.	RathE3_cons	109	short	104	medium	2343895	chromoarm	607	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	8860080	8860702	AT5TE32090	.	-	ATREP4	Helitron	RC	622	short	832	high	2333836	chromoarm	2231	no-RdDM	no-CHH	.	.	.	.	.
Chr5	8860708	8861040	AT5TE32095	.	-	ATSINE4	.	SINE	332	short	98	medium	2333498	chromoarm	2389	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	8861769	8862113	AT5TE32100	.	-	ATCOPIA75	Copia	LTR	344	short	20	low	2332425	chromoarm	1316	no-CHH	no-CHH	.	.	.	.	.
Chr5	8896142	8896395	AT5TE32230	.	+	ATMU3N1	MuDR	DNA	254	short	19	low	2298143	chromoarm	661	.	.	.	.	.	.	.
Chr5	8908923	8909172	AT5TE32280	.	+	VANDAL17	MuDR	DNA	249	short	178	medium	2285366	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	8909878	8909967	AT5TE32285	.	+	ATCOPIA68	Copia	LTR	89	tiny	43	low	2284571	chromoarm	31	no-CHH	no-CHH	.	.	.	.	.
Chr5	8911183	8911530	AT5TE32290	.	+	ATSINE4	.	SINE	347	short	98	medium	2283008	chromoarm	1336	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	8911536	8911572	AT5TE32295	.	+	BRODYAGA2	MuDR	DNA	36	tiny	525	high	2282966	chromoarm	1386	no-CHH	no-CHH	.	.	.	.	.
Chr5	8911572	8911826	AT5TE32300	.	-	ATTIRTA1	Tc1	DNA	254	short	95	medium	2282712	chromoarm	1132	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr5	8917937	8918487	AT5TE32320	.	+	ATREP10A	Helitron	RC	550	short	279	high	2276051	chromoarm	1253	no-CHH	no-CHH	.	.	.	.	.
Chr5	8921535	8921708	AT5TE32330	.	+	ATLINE1A	L1	LINE	173	short	289	high	2272830	chromoarm	4851	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	8923598	8924297	AT5TE32335	.	+	HELITRONY1A	Helitron	RC	699	short	271	high	2270241	chromoarm	6914	no-CHH	no-CHH	.	.	.	.	.
Chr5	8925082	8925636	AT5TE32340	.	-	TA1-2	Copia	LTR	554	short	.	low	2268902	chromoarm	8398	no-CHH	no-CHH	.	.	.	.	.
Chr5	8927474	8927798	AT5TE32345	.	-	ATMUNX1	MuDR	DNA	324	short	155	medium	2266740	chromoarm	7513	no-CHH	no-CHH	.	.	.	.	.
Chr5	8927798	8927822	AT5TE32350	.	-	ATMUNX1	MuDR	DNA	24	tiny	155	medium	2266716	chromoarm	7489	no-CHH	no-CHH	.	.	.	.	.
Chr5	8927996	8934328	AT5TE32355	.	+	ATCOPIA27	Copia	LTR	6332	long	19	low	2260210	chromoarm	983	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	8936509	8937428	AT5TE32360	.	+	ATREP11	Helitron	RC	919	short	841	high	2257110	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	8938778	8940161	AT5TE32365	.	-	ATREP10D	Helitron	RC	1383	short	1295	high	2254377	chromoarm	578	no-CHH	no-CHH	.	.	.	.	.
Chr5	8940161	8940266	AT5TE32370	.	+	BRODYAGA2	MuDR	DNA	105	short	525	high	2254272	chromoarm	1961	no-CHH	no-CHH	.	.	.	.	.
Chr5	8945485	8945638	AT5TE32380	.	-	ATREP10C	Helitron	RC	153	short	123	medium	2248900	chromoarm	1787	no-CHH	no-CHH	.	.	.	.	.
Chr5	8956319	8956987	AT5TE32420	.	-	ATHILA	Gypsy	LTR	668	short	198	medium	2237551	chromoarm	808	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	8956989	8957778	AT5TE32425	.	+	ATMUN1	MuDR	DNA	789	short	107	medium	2236760	chromoarm	1478	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	8957778	8958016	AT5TE32430	.	-	ATREP9	Helitron	RC	238	short	201	high	2236522	chromoarm	2267	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	8963912	8964441	AT5TE32450	.	+	ATREP11	Helitron	RC	529	short	841	high	2230097	chromoarm	1073	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	8964441	8964535	AT5TE32455	.	+	HELITRONY1B	Helitron	RC	94	tiny	414	high	2230003	chromoarm	979	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	8964535	8964632	AT5TE32460	.	+	ATREP15	Helitron	RC	97	tiny	1003	high	2229906	chromoarm	882	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	8984514	8986186	AT5TE32530	.	-	ARNOLDY1	MuDR	DNA	1672	short	237	high	2208352	chromoarm	789	no-CHH	no-CHH	.	.	.	.	.
Chr5	8987207	8987299	AT5TE32535	.	-	ATENSPM4	En-Spm	DNA	92	tiny	50	medium	2207239	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	8989662	8990384	AT5TE32540	.	-	ATREP15	Helitron	RC	722	short	1003	high	2204154	chromoarm	2030	no-CHH	no-CHH	.	.	.	.	.
Chr5	8992412	8992593	AT5TE32545	.	+	ATCOPIA34	Copia	LTR	181	short	16	low	2201945	chromoarm	4654	no-CHH	no-CHH	.	.	.	.	.
Chr5	9000479	9000659	AT5TE32570	.	-	HELITRONY1A	Helitron	RC	180	short	271	high	2193879	chromoarm	905	no-CHH	no-CHH	.	.	.	.	.
Chr5	9007565	9007643	AT5TE32600	.	+	ATENSPM2	En-Spm	DNA	78	tiny	114	medium	2186895	chromoarm	2063	no-CHH	no-CHH	.	.	.	.	.
Chr5	9007978	9008723	AT5TE32605	.	-	BRODYAGA2	MuDR	DNA	745	short	525	high	2185815	chromoarm	2185	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9008127	9008423	AT5TE32610	.	+	ATMUNX1	MuDR	DNA	296	short	155	medium	2186115	chromoarm	2485	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9010399	9010563	AT5TE32615	.	+	ATCOPIA1	Copia	LTR	164	short	11	low	2183975	chromoarm	345	no-CHH	no-CHH	.	.	.	.	.
Chr5	9012827	9013074	AT5TE32620	.	+	ATTIRTA1	Tc1	DNA	247	short	95	medium	2181464	chromoarm	1007	no-CHH	no-CHH	.	.	.	.	.
Chr5	9013220	9013767	AT5TE32625	.	+	ATLINE1A	L1	LINE	547	short	289	high	2180771	chromoarm	314	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	9018583	9018682	AT5TE32635	.	-	ATLINE1A	L1	LINE	99	tiny	289	high	2175856	chromoarm	159	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9020118	9020256	AT5TE32640	.	+	VANDAL17	MuDR	DNA	138	short	178	medium	2174282	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	9020349	9022599	AT5TE32645	.	+	VANDAL1N1	MuDR	DNA	2250	medium	52	medium	2171939	chromoarm	94	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	9022610	9023566	AT5TE32650	.	-	ATMU6	MuDR	DNA	956	short	26	low	2170972	chromoarm	982	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9023021	9023165	AT5TE32655	.	+	BOMZH2	MuDR	DNA	144	short	47	low	2171373	chromoarm	1383	no-CHH	no-CHH	.	.	.	.	.
Chr5	9023566	9023624	AT5TE32660	.	+	ATMU6N1	MuDR	DNA	58	tiny	39	low	2170914	chromoarm	924	no-CHH	no-CHH	.	.	.	.	.
Chr5	9028323	9028712	AT5TE32670	.	+	HELITRONY1D	Helitron	RC	389	short	756	high	2165826	chromoarm	63	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	9028712	9031806	AT5TE32675	.	+	ATREP4	Helitron	RC	3094	medium	832	high	2162732	chromoarm	452	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	9029897	9029983	AT5TE32680	.	+	ATREP4	Helitron	RC	86	tiny	832	high	2164555	chromoarm	1637	no-RdDM	no-CHH	.	.	.	.	.
Chr5	9031806	9031943	AT5TE32685	.	-	ATREP10A	Helitron	RC	137	short	279	high	2162595	chromoarm	1536	no-CHH	no-RdDM	.	.	.	.	.
Chr5	9041912	9042847	AT5TE32720	.	-	HELITRONY1E	Helitron	RC	935	short	447	high	2151691	chromoarm	535	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9048010	9048800	AT5TE32730	.	+	HELITRONY1E	Helitron	RC	790	short	447	high	2145738	chromoarm	2079	no-RdDM	no-CHH	.	.	.	.	.
Chr5	9048801	9048887	AT5TE32735	.	-	VANDAL16	MuDR	DNA	87	tiny	42	low	2145651	chromoarm	1992	.	.	.	.	.	.	.
Chr5	9055229	9055260	AT5TE32750	.	+	HELITRONY2	Helitron	RC	32	tiny	198	medium	2139278	chromoarm	77	.	.	LowExpressed	.	.	.	.
Chr5	9055260	9056024	AT5TE32755	.	+	ATREP3	Helitron	RC	764	short	1439	high	2138514	chromoarm	109	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	9056902	9057371	AT5TE32760	.	+	BRODYAGA1A	MuDR	DNA	469	short	586	high	2137167	chromoarm	557	no-RdDM	no-CHH	.	.	.	.	.
Chr5	9057382	9057628	AT5TE32765	.	+	ATREP1	Helitron	RC	246	short	498	high	2136910	chromoarm	300	no-CHH	no-CHH	.	.	.	.	.
Chr5	9059401	9059852	AT5TE32770	.	-	HELITRONY3	Helitron	RC	451	short	1399	high	2134686	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	9059852	9061502	AT5TE32775	.	+	ATREP10D	Helitron	RC	1650	short	1295	high	2133036	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	9061502	9061663	AT5TE32780	.	-	ATCOPIA94	Copia	LTR	161	short	39	low	2132875	chromoarm	1253	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	9061672	9062294	AT5TE32785	.	+	TA11	L1	LINE	622	short	157	medium	2132244	chromoarm	622	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	9065547	9066116	AT5TE32795	.	+	ATREP9	Helitron	RC	569	short	201	high	2128422	chromoarm	536	no-CHH	no-CHH	.	.	.	.	.
Chr5	9068158	9068733	AT5TE32800	.	-	ATREP2	Helitron	RC	576	short	164	medium	2125805	chromoarm	183	.	.	.	.	.	.	.
Chr5	9068734	9068937	AT5TE32805	.	-	ATREP14	Helitron	RC	204	short	47	low	2125601	chromoarm	759	.	.	.	.	.	.	.
Chr5	9069297	9070680	AT5TE32810	.	+	ATDNAI27T9A	MuDR	DNA	1383	short	116	medium	2123858	chromoarm	1323	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	9071130	9071425	AT5TE32815	.	+	ATHATN6	HAT	DNA	295	short	43	low	2123113	chromoarm	1304	no-CHH	no-CHH	.	.	.	.	.
Chr5	9077849	9078497	AT5TE32830	.	-	ATREP5	Helitron	RC	648	short	624	high	2116041	chromoarm	470	no-CHH	no-CHH	.	.	.	.	.
Chr5	9078497	9078706	AT5TE32835	.	-	ATREP4	Helitron	RC	209	short	832	high	2115832	chromoarm	971	no-CHH	no-CHH	.	.	.	.	.
Chr5	9083344	9084274	AT5TE32845	.	+	HELITRONY3	Helitron	RC	930	short	1399	high	2110264	chromoarm	997	no-CHH	no-CHH	.	.	.	.	.
Chr5	9084953	9085193	AT5TE32850	.	-	ATHILA7	Gypsy	LTR	240	short	134	medium	2109345	chromoarm	318	no-CHH	no-CHH	.	.	.	.	.
Chr5	9088760	9089595	AT5TE32860	.	+	ATREP15	Helitron	RC	835	short	1003	high	2104943	chromoarm	1388	no-CHH	no-CHH	.	.	.	.	.
Chr5	9089595	9089756	AT5TE32865	.	+	ATHATN1	HAT	DNA	161	short	69	medium	2104782	chromoarm	2223	no-CHH	no-CHH	.	.	.	.	.
Chr5	9089756	9089938	AT5TE32870	.	+	ATHATN1	HAT	DNA	182	short	69	medium	2104600	chromoarm	2384	no-CHH	no-CHH	.	.	.	.	.
Chr5	9089985	9090215	AT5TE32875	.	+	ATHILA7	Gypsy	LTR	230	short	134	medium	2104323	chromoarm	2613	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	9092668	9094772	AT5TE32880	.	-	ATHAT1	HAT	DNA	2104	medium	105	medium	2099766	chromoarm	1902	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	9095310	9095497	AT5TE32885	.	-	RathE1_cons	.	RathE1_cons	187	short	213	high	2099041	chromoarm	1177	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	9111892	9112015	AT5TE32940	.	-	ATREP15	Helitron	RC	123	short	1003	high	2082523	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	9112015	9112036	AT5TE32945	.	-	BRODYAGA2	MuDR	DNA	21	tiny	525	high	2082502	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	9112036	9112587	AT5TE32950	.	-	ATREP15	Helitron	RC	551	short	1003	high	2081951	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	9115188	9115386	AT5TE32955	.	+	VANDAL2N1	MuDR	DNA	198	short	51	medium	2079152	chromoarm	1903	PolIV-and-RDR6-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	9129092	9129218	AT5TE33000	.	+	RathE3_cons	.	RathE3_cons	126	short	104	medium	2065320	chromoarm	482	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	9129538	9129780	AT5TE33005	.	-	ATREP15	Helitron	RC	242	short	1003	high	2064758	chromoarm	928	no-CHH	no-CHH	.	.	.	.	.
Chr5	9129780	9130624	AT5TE33010	.	-	ATREP10D	Helitron	RC	844	short	1295	high	2063914	chromoarm	171	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	9130624	9130850	AT5TE33015	.	+	ATREP5	Helitron	RC	226	short	624	high	2063688	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	9133556	9133654	AT5TE33025	.	+	ATREP4	Helitron	RC	98	tiny	832	high	2060884	chromoarm	1920	no-CHH	no-CHH	.	.	.	.	.
Chr5	9133654	9133953	AT5TE33030	.	+	ATREP3	Helitron	RC	299	short	1439	high	2060585	chromoarm	2018	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	9133953	9135077	AT5TE33035	.	+	ATREP3	Helitron	RC	1124	short	1439	high	2059461	chromoarm	2317	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9135077	9135102	AT5TE33040	.	+	ATREP3	Helitron	RC	25	tiny	1439	high	2059436	chromoarm	2358	no-CHH	no-CHH	.	.	.	.	.
Chr5	9135102	9135203	AT5TE33045	.	+	ATREP10D	Helitron	RC	101	short	1295	high	2059335	chromoarm	2257	no-CHH	no-CHH	.	.	.	.	.
Chr5	9140766	9141067	AT5TE33060	.	-	ATREP6	Helitron	RC	301	short	181	medium	2053471	chromoarm	667	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9141068	9141100	AT5TE33065	.	-	ATREP11	Helitron	RC	33	tiny	841	high	2053438	chromoarm	968	.	.	.	.	.	.	.
Chr5	9141100	9142038	AT5TE33070	.	-	BRODYAGA2	MuDR	DNA	938	short	525	high	2052500	chromoarm	1001	no-CHH	no-CHH	.	.	.	.	.
Chr5	9142038	9142266	AT5TE33075	.	-	HELITRONY3	Helitron	RC	228	short	1399	high	2052272	chromoarm	1002	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9155764	9155979	AT5TE33120	.	+	RathE2_cons	.	RathE2_cons	215	short	74	medium	2038559	chromoarm	466	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	9161982	9162557	AT5TE33140	.	-	TNAT1A	.	DNA	575	short	162	medium	2031981	chromoarm	620	no-CHH	no-CHH	.	.	.	.	.
Chr5	9166687	9166761	AT5TE33150	.	+	ATREP4	Helitron	RC	74	tiny	832	high	2027777	chromoarm	2074	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	9166761	9167162	AT5TE33155	.	+	ATIS112A	Harbinger	DNA	401	short	173	medium	2027376	chromoarm	2148	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	9167162	9167274	AT5TE33160	.	-	ATREP3	Helitron	RC	112	short	1439	high	2027264	chromoarm	2549	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	9167274	9169321	AT5TE33165	.	+	ATREP10D	Helitron	RC	2047	medium	1295	high	2025217	chromoarm	2661	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9169322	9169527	AT5TE33170	.	+	HELITRONY3	Helitron	RC	206	short	1399	high	2025011	chromoarm	3989	.	.	.	.	.	.	.
Chr5	9169527	9169897	AT5TE33175	.	+	ATREP3	Helitron	RC	370	short	1439	high	2024641	chromoarm	3619	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	9169897	9170482	AT5TE33180	.	+	ATREP1	Helitron	RC	585	short	498	high	2024056	chromoarm	3034	no-CHH	no-CHH	.	.	.	.	.
Chr5	9170482	9170862	AT5TE33185	.	-	ATREP4	Helitron	RC	380	short	832	high	2023676	chromoarm	2654	no-CHH	no-CHH	.	.	.	.	.
Chr5	9175301	9175634	AT5TE33195	.	-	HELITRONY1E	Helitron	RC	333	short	447	high	2018904	chromoarm	759	no-CHH	no-CHH	.	.	.	.	.
Chr5	9175636	9176568	AT5TE33200	.	+	ATREP10C	Helitron	RC	932	short	123	medium	2017970	chromoarm	1094	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	9176041	9176337	AT5TE33205	.	+	HELITRONY1D	Helitron	RC	296	short	756	high	2018201	chromoarm	1499	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	9176568	9176647	AT5TE33210	.	+	ATREP10C	Helitron	RC	79	tiny	123	medium	2017891	chromoarm	2026	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9176647	9177027	AT5TE33215	.	-	ATREP5	Helitron	RC	380	short	624	high	2017511	chromoarm	2105	no-CHH	no-CHH	.	.	.	.	.
Chr5	9177027	9179398	AT5TE33220	.	-	HELITRONY1B	Helitron	RC	2371	medium	414	high	2015140	chromoarm	2485	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	9179714	9180393	AT5TE33225	.	-	ATHAT1	HAT	DNA	680	short	105	medium	2014145	chromoarm	5171	.	.	.	.	.	.	.
Chr5	9181248	9181629	AT5TE33230	.	-	ATDNA2T9C	MuDR	DNA	381	short	242	high	2012909	chromoarm	6706	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr5	9181649	9189417	AT5TE33235	.	+	ATGP1	Gypsy	LTR	7768	long	144	medium	2005121	chromoarm	204	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	9194541	9194767	AT5TE33245	.	-	ATREP6	Helitron	RC	226	short	181	medium	1999771	chromoarm	194	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	9194767	9195876	AT5TE33250	.	-	ATREP8	Helitron	RC	1109	short	75	medium	1998662	chromoarm	420	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9195876	9196073	AT5TE33255	.	-	ATREP7	Helitron	RC	197	short	164	medium	1998465	chromoarm	684	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	9196073	9196292	AT5TE33260	.	+	ATREP10A	Helitron	RC	219	short	279	high	1998246	chromoarm	465	no-CHH	no-CHH	.	.	.	.	.
Chr5	9198962	9199227	AT5TE33265	.	-	DT1	Mariner	DNA	265	short	123	medium	1995311	chromoarm	281	no-CHH	no-CHH	.	.	.	.	.
Chr5	9204015	9204050	AT5TE33275	.	+	ATREP10B	Helitron	RC	35	tiny	491	high	1990488	chromoarm	623	no-CHH	no-CHH	.	.	.	.	.
Chr5	9204050	9205264	AT5TE33280	.	+	ATREP10D	Helitron	RC	1214	short	1295	high	1989274	chromoarm	658	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9205264	9205355	AT5TE33285	.	-	ATREP10D	Helitron	RC	91	tiny	1295	high	1989183	chromoarm	1152	no-CHH	no-CHH	.	.	.	.	.
Chr5	9205355	9205442	AT5TE33290	.	+	ATREP10D	Helitron	RC	87	tiny	1295	high	1989096	chromoarm	1065	no-CHH	no-CHH	.	.	.	.	.
Chr5	9205442	9205599	AT5TE33295	.	+	ATREP10A	Helitron	RC	157	short	279	high	1988939	chromoarm	908	no-CHH	no-CHH	.	.	.	.	.
Chr5	9211077	9211106	AT5TE33310	.	-	ATHILA7	Gypsy	LTR	29	tiny	134	medium	1983432	chromoarm	674	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	9211108	9218667	AT5TE33315	.	-	ATHILA7A	Gypsy	LTR	7559	long	31	low	1975871	chromoarm	705	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	9219045	9219318	AT5TE33320	.	+	ATCOPIA94	Copia	LTR	273	short	39	low	1975220	chromoarm	6760	no-CHH	no-CHH	.	.	.	.	.
Chr5	9220187	9220796	AT5TE33325	.	-	ATCOPIA41	Copia	LTR	609	short	39	low	1973742	chromoarm	5282	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	9221731	9221927	AT5TE33330	.	-	ATREP15	Helitron	RC	196	short	1003	high	1972611	chromoarm	4151	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	9221927	9223749	AT5TE33335	.	+	ATREP9	Helitron	RC	1822	short	201	high	1970789	chromoarm	2329	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9223749	9224870	AT5TE33340	.	+	ATREP11	Helitron	RC	1121	short	841	high	1969668	chromoarm	1208	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9224870	9224892	AT5TE33345	.	+	ATREP3	Helitron	RC	22	tiny	1439	high	1969646	chromoarm	1186	no-CHH	RDR6-RdDM	.	.	.	.	.
Chr5	9224892	9225685	AT5TE33350	.	+	ATREP15	Helitron	RC	793	short	1003	high	1968853	chromoarm	393	no-CHH	no-CHH	.	.	.	.	.
Chr5	9231429	9231580	AT5TE33370	.	-	ATIS112A	Harbinger	DNA	151	short	173	medium	1962958	chromoarm	396	no-CHH	no-CHH	.	.	.	.	.
Chr5	9231717	9231941	AT5TE33375	.	-	ATIS112A	Harbinger	DNA	224	short	173	medium	1962597	chromoarm	684	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	9231942	9232704	AT5TE33380	.	+	ATHATN2	HAT	DNA	763	short	46	low	1961834	chromoarm	908	.	.	.	.	.	.	.
Chr5	9232704	9232754	AT5TE33385	.	-	ATREP10	Helitron	RC	50	tiny	63	medium	1961784	chromoarm	1671	no-CHH	no-RdDM	.	.	.	.	.
Chr5	9232766	9232849	AT5TE33390	.	-	ATHILA7	Gypsy	LTR	83	tiny	134	medium	1961689	chromoarm	1733	no-CHH	no-CHH	.	.	.	.	.
Chr5	9232849	9234036	AT5TE33395	.	-	ATHILA7A	Gypsy	LTR	1187	short	31	low	1960502	chromoarm	702	no-CHH	no-CHH	.	.	.	.	.
Chr5	9233656	9233695	AT5TE33400	.	-	ATHILA7	Gypsy	LTR	39	tiny	134	medium	1960843	chromoarm	1043	no-CHH	no-CHH	.	.	.	.	.
Chr5	9234174	9234196	AT5TE33405	.	-	BRODYAGA2	MuDR	DNA	22	tiny	525	high	1960342	chromoarm	542	no-CHH	no-CHH	.	.	.	.	.
Chr5	9234196	9234676	AT5TE33410	.	+	ATREP10B	Helitron	RC	480	short	491	high	1959862	chromoarm	62	no-CHH	no-CHH	.	.	.	.	.
Chr5	9236683	9237736	AT5TE33415	.	+	ATREP10D	Helitron	RC	1053	short	1295	high	1956802	chromoarm	499	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9238559	9238813	AT5TE33420	.	-	HELITRONY3	Helitron	RC	254	short	1399	high	1955725	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	9238813	9239761	AT5TE33425	.	-	ATREP10D	Helitron	RC	948	short	1295	high	1954777	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9248836	9248980	AT5TE33450	.	-	RathE2_cons	.	RathE2_cons	144	short	74	medium	1945558	chromoarm	1842	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9249017	9253968	AT5TE33455	.	+	ATMU1	MuDR	DNA	4951	medium	59	medium	1940570	chromoarm	1592	no-RdDM	no-RdDM	ExpressedAndAnnotated	9252720,9253662	9252982,9252960	+,-	transcript_id-"27b020db-f5c3-42d6-ace1-7b2402fd6992|4",transcript_id-"cae9d6ef-21d0-4472-aee0-6078c7c76fc6|11"
Chr5	9253968	9255225	AT5TE33460	.	+	HELITRONY1C	Helitron	RC	1257	short	120	medium	1939313	chromoarm	335	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	9255225	9255281	AT5TE33465	.	+	ATREP3	Helitron	RC	56	tiny	1439	high	1939257	chromoarm	279	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	9259176	9259394	AT5TE33475	.	+	ATMU1	MuDR	DNA	219	short	59	medium	1935144	chromoarm	284	.	.	.	.	.	.	.
Chr5	9260154	9260366	AT5TE33480	.	-	ATMU1	MuDR	DNA	212	short	59	medium	1934172	chromoarm	1213	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	9260698	9260745	AT5TE33485	.	-	ATREP3	Helitron	RC	47	tiny	1439	high	1933793	chromoarm	834	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	9260745	9260788	AT5TE33490	.	-	HELITRONY1B	Helitron	RC	43	tiny	414	high	1933750	chromoarm	791	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9260788	9261456	AT5TE33495	.	+	HELITRONY1B	Helitron	RC	668	short	414	high	1933082	chromoarm	123	no-CHH	no-CHH	.	.	.	.	.
Chr5	9261456	9261512	AT5TE33500	.	+	ATREP3	Helitron	RC	56	tiny	1439	high	1933026	chromoarm	67	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	9272139	9274532	AT5TE33540	.	-	ATCOPIA63	Copia	LTR	2393	medium	11	low	1920006	chromoarm	1885	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	9274532	9275839	AT5TE33545	.	+	ATLINE1_1	L1	LINE	1307	short	61	medium	1918699	chromoarm	819	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	9276033	9276357	AT5TE33550	.	-	ATDNAI27T9C	MuDR	DNA	324	short	108	medium	1918181	chromoarm	301	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	9276357	9276442	AT5TE33555	.	-	ATDNAI27T9C	MuDR	DNA	85	tiny	108	medium	1918096	chromoarm	216	no-CHH	no-CHH	.	.	.	.	.
Chr5	9279624	9280496	AT5TE33565	.	+	ATREP15	Helitron	RC	872	short	1003	high	1914042	chromoarm	13	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	9289219	9289251	AT5TE33590	.	-	ATREP11	Helitron	RC	32	tiny	841	high	1905287	chromoarm	348	no-CHH	no-RdDM	.	.	.	.	.
Chr5	9289251	9290036	AT5TE33595	.	-	ATREP10D	Helitron	RC	785	short	1295	high	1904502	chromoarm	380	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	9290036	9290138	AT5TE33600	.	+	ARNOLDY2	MuDR	DNA	102	short	288	high	1904400	chromoarm	1165	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9290645	9290690	AT5TE33605	.	+	ATREP4	Helitron	RC	45	tiny	832	high	1903848	chromoarm	1745	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	9290690	9290851	AT5TE33610	.	-	ATREP18	.	DNA	161	short	391	high	1903687	chromoarm	1584	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	9290851	9291485	AT5TE33615	.	-	TNAT1A	.	DNA	634	short	162	medium	1903053	chromoarm	950	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	9291485	9291820	AT5TE33620	.	-	ATREP11	Helitron	RC	335	short	841	high	1902718	chromoarm	615	no-CHH	no-CHH	.	.	.	.	.
Chr5	9291820	9291933	AT5TE33625	.	+	ATREP4	Helitron	RC	113	short	832	high	1902605	chromoarm	502	no-CHH	no-CHH	.	.	.	.	.
Chr5	9297208	9297298	AT5TE33635	.	+	ATMUNX1	MuDR	DNA	90	tiny	155	medium	1897240	chromoarm	1233	no-CHH	no-CHH	.	.	.	.	.
Chr5	9297298	9297344	AT5TE33640	.	-	ATREP10D	Helitron	RC	46	tiny	1295	high	1897194	chromoarm	1323	no-CHH	no-CHH	.	.	.	.	.
Chr5	9297344	9298050	AT5TE33645	.	-	ARNOLDY1	MuDR	DNA	706	short	237	high	1896488	chromoarm	1369	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	9298050	9298910	AT5TE33650	.	+	ATREP1	Helitron	RC	860	short	498	high	1895628	chromoarm	1511	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9298910	9298989	AT5TE33655	.	+	ATREP6	Helitron	RC	79	tiny	181	medium	1895549	chromoarm	1432	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	9298989	9299014	AT5TE33660	.	+	HELITRONY1A	Helitron	RC	25	tiny	271	high	1895524	chromoarm	1407	no-CHH	no-CHH	.	.	.	.	.
Chr5	9315933	9316199	AT5TE33720	.	+	ATLINE1_3A	L1	LINE	266	short	160	medium	1878339	chromoarm	475	no-CHH	no-CHH	.	.	.	.	.
Chr5	9316956	9317209	AT5TE33725	.	+	RathE1_cons	.	RathE1_cons	253	short	213	high	1877329	chromoarm	1246	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9321230	9321350	AT5TE33735	.	-	ARNOLDY1	MuDR	DNA	120	short	237	high	1873188	chromoarm	414	no-CHH	no-CHH	.	.	.	.	.
Chr5	9321375	9321772	AT5TE33740	.	-	HELITRONY3	Helitron	RC	397	short	1399	high	1872766	chromoarm	559	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	9321772	9323049	AT5TE33745	.	+	HELITRONY3	Helitron	RC	1277	short	1399	high	1871489	chromoarm	956	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	9323050	9323247	AT5TE33750	.	-	ATREP4	Helitron	RC	198	short	832	high	1871291	chromoarm	2233	.	.	.	.	.	.	.
Chr5	9324673	9324742	AT5TE33755	.	-	ATREP15	Helitron	RC	69	tiny	1003	high	1869796	chromoarm	3857	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9324742	9326092	AT5TE33760	.	+	ATREP11	Helitron	RC	1350	short	841	high	1868446	chromoarm	3926	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	9326092	9326169	AT5TE33765	.	-	ATREP4	Helitron	RC	77	tiny	832	high	1868369	chromoarm	5276	no-CHH	no-CHH	.	.	.	.	.
Chr5	9326212	9326805	AT5TE33770	.	+	HELITRONY3	Helitron	RC	593	short	1399	high	1867733	chromoarm	4969	no-CHH	no-CHH	.	.	.	.	.
Chr5	9327607	9328131	AT5TE33775	.	-	ATREP10B	Helitron	RC	524	short	491	high	1866407	chromoarm	3643	no-CHH	no-CHH	.	.	.	.	.
Chr5	9336365	9336608	AT5TE33800	.	-	ATHAT10	HAT	DNA	243	short	35	low	1857930	chromoarm	3321	no-CHH	no-CHH	.	.	.	.	.
Chr5	9336898	9336982	AT5TE33805	.	+	ATHATN10	HAT	DNA	84	tiny	48	low	1857556	chromoarm	3854	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9339834	9341549	AT5TE33815	.	-	HELITRONY3	Helitron	RC	1715	short	1399	high	1852989	chromoarm	2235	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9341549	9341773	AT5TE33820	.	-	HELITRONY3	Helitron	RC	224	short	1399	high	1852765	chromoarm	2011	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	9341773	9341817	AT5TE33825	.	+	ARNOLDY2	MuDR	DNA	44	tiny	288	high	1852721	chromoarm	1967	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	9341817	9343384	AT5TE33830	.	-	ARNOLDY2	MuDR	DNA	1567	short	288	high	1851154	chromoarm	400	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9343384	9343426	AT5TE33835	.	+	HELITRONY3	Helitron	RC	42	tiny	1399	high	1851112	chromoarm	358	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9343427	9343654	AT5TE33840	.	-	HELITRONY3	Helitron	RC	228	short	1399	high	1850884	chromoarm	130	.	.	.	.	.	.	.
Chr5	9343654	9343823	AT5TE33845	.	+	HELITRONY3	Helitron	RC	169	short	1399	high	1850715	chromoarm	0	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9345789	9345840	AT5TE33850	.	-	ATTIR16T3A	.	DNA	51	tiny	106	medium	1848698	chromoarm	904	PolIV-and-RDR6-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	9345871	9346363	AT5TE33855	.	+	ATDNA2T9C	MuDR	DNA	492	short	242	high	1848175	chromoarm	986	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	9347243	9347539	AT5TE33860	.	-	ATHPOGON3	Pogo	DNA	296	short	118	medium	1846999	chromoarm	301	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	9348228	9348429	AT5TE33865	.	+	ATHILA7	Gypsy	LTR	201	short	134	medium	1846109	chromoarm	54	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	9349285	9350744	AT5TE33870	.	+	ATREP10B	Helitron	RC	1459	short	491	high	1843794	chromoarm	70	no-CHH	no-CHH	.	.	.	.	.
Chr5	9352551	9352625	AT5TE33875	.	+	ATREP3	Helitron	RC	74	tiny	1439	high	1841913	chromoarm	1080	no-RdDM	no-CHH	.	.	.	.	.
Chr5	9352625	9352689	AT5TE33880	.	-	ATREP4	Helitron	RC	64	tiny	832	high	1841849	chromoarm	1154	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr5	9352689	9353967	AT5TE33885	.	-	ATREP10D	Helitron	RC	1278	short	1295	high	1840571	chromoarm	1218	no-CHH	no-CHH	.	.	.	.	.
Chr5	9354129	9354183	AT5TE33890	.	+	HELITRONY1A	Helitron	RC	54	tiny	271	high	1840355	chromoarm	1820	no-CHH	no-CHH	.	.	.	.	.
Chr5	9354183	9354790	AT5TE33895	.	+	ATREP11	Helitron	RC	607	short	841	high	1839748	chromoarm	1213	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9354790	9355051	AT5TE33900	.	+	HELITRONY1E	Helitron	RC	261	short	447	high	1839487	chromoarm	952	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9355051	9355152	AT5TE33905	.	+	SIMPLEHAT2	HAT	DNA	101	short	73	medium	1839386	chromoarm	851	no-CHH	no-CHH	.	.	.	.	.
Chr5	9355152	9355189	AT5TE33910	.	+	HELITRONY3	Helitron	RC	37	tiny	1399	high	1839349	chromoarm	814	no-CHH	no-CHH	.	.	.	.	.
Chr5	9361051	9361279	AT5TE33930	.	-	BRODYAGA1A	MuDR	DNA	228	short	586	high	1833259	chromoarm	63	no-CHH	no-CHH	.	.	.	.	.
Chr5	9362157	9362328	AT5TE33935	.	-	ATREP10D	Helitron	RC	171	short	1295	high	1832210	chromoarm	1169	no-CHH	no-CHH	.	.	.	.	.
Chr5	9362328	9362585	AT5TE33940	.	-	ATREP10B	Helitron	RC	257	short	491	high	1831953	chromoarm	1340	no-CHH	no-CHH	.	.	.	.	.
Chr5	9362601	9363803	AT5TE33945	.	+	ATREP6	Helitron	RC	1202	short	181	medium	1830735	chromoarm	1613	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9363803	9363987	AT5TE33950	.	+	ATREP7	Helitron	RC	184	short	164	medium	1830551	chromoarm	2709	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	9363987	9364113	AT5TE33955	.	-	RathE3_cons	.	RathE3_cons	126	short	104	medium	1830425	chromoarm	2583	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	9368108	9368165	AT5TE33965	.	-	BRODYAGA1	MuDR	DNA	57	tiny	251	high	1826373	chromoarm	1145	no-CHH	no-CHH	.	.	.	.	.
Chr5	9368165	9368185	AT5TE33970	.	-	BRODYAGA1	MuDR	DNA	20	tiny	251	high	1826353	chromoarm	1202	no-CHH	no-CHH	.	.	.	.	.
Chr5	9368185	9368532	AT5TE33975	.	-	BRODYAGA1A	MuDR	DNA	347	short	586	high	1826006	chromoarm	1222	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9368532	9368813	AT5TE33980	.	+	ATHILA7A	Gypsy	LTR	281	short	31	low	1825725	chromoarm	1569	no-CHH	no-CHH	.	.	.	.	.
Chr5	9368940	9370391	AT5TE33985	.	+	HELITRONY1E	Helitron	RC	1451	short	447	high	1824147	chromoarm	1977	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9370680	9374248	AT5TE33990	.	-	ATREP4	Helitron	RC	3568	medium	832	high	1820290	chromoarm	1207	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	9374248	9374268	AT5TE33995	.	-	ATREP4	Helitron	RC	20	tiny	832	high	1820270	chromoarm	1187	no-CHH	no-CHH	.	.	.	.	.
Chr5	9374268	9374355	AT5TE34000	.	+	HELITRONY1A	Helitron	RC	87	tiny	271	high	1820183	chromoarm	1100	no-CHH	no-CHH	.	.	.	.	.
Chr5	9374607	9374636	AT5TE34005	.	-	ATHATN1	HAT	DNA	29	tiny	69	medium	1819902	chromoarm	819	no-CHH	no-CHH	.	.	.	.	.
Chr5	9374636	9375117	AT5TE34010	.	-	ATHATN1	HAT	DNA	481	short	69	medium	1819421	chromoarm	338	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	9379923	9380661	AT5TE34020	.	+	ATN9_1	MuDR	DNA	738	short	65	medium	1813877	chromoarm	1041	no-RdDM	no-CHH	.	.	.	.	.
Chr5	9380661	9380704	AT5TE34025	.	+	BRODYAGA2	MuDR	DNA	43	tiny	525	high	1813834	chromoarm	1779	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	9380704	9380728	AT5TE34030	.	+	HELITRONY1D	Helitron	RC	24	tiny	756	high	1813810	chromoarm	1822	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	9381550	9381672	AT5TE34035	.	-	META1	Copia	LTR	122	short	138	medium	1812866	chromoarm	2668	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	9381672	9385978	AT5TE34040	.	-	META1	Copia	LTR	4306	medium	138	medium	1808560	chromoarm	2790	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	9386496	9385497	-	transcript_id-"2c3f0bd8-ead1-4f45-abd0-c3412330337f|5"
Chr5	9385978	9386074	AT5TE34045	.	-	META1	Copia	LTR	96	tiny	138	medium	1808464	chromoarm	6990	PolIV-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr5	9386074	9386446	AT5TE34050	.	-	ATCOPIA28	Copia	LTR	372	short	81	medium	1808092	chromoarm	6618	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	9386446	9386621	AT5TE34055	.	-	META1	Copia	LTR	175	short	138	medium	1807917	chromoarm	6443	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	9386622	9386809	AT5TE34060	.	-	ATREP10D	Helitron	RC	187	short	1295	high	1807729	chromoarm	6255	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	9386809	9388174	AT5TE34065	.	+	HELITRONY3	Helitron	RC	1365	short	1399	high	1806364	chromoarm	4890	no-CHH	no-CHH	.	.	.	.	.
Chr5	9388636	9389338	AT5TE34070	.	-	ATLINEIII	L1	LINE	702	short	196	medium	1805200	chromoarm	3726	no-CHH	no-CHH	.	.	.	.	.
Chr5	9389338	9389502	AT5TE34075	.	+	ATLINEIII	L1	LINE	164	short	196	medium	1805036	chromoarm	3562	no-CHH	no-CHH	.	.	.	.	.
Chr5	9389518	9392278	AT5TE34080	.	-	ATLINEIII	L1	LINE	2760	medium	196	medium	1802260	chromoarm	786	no-CHH	no-CHH	.	.	.	.	.
Chr5	9394088	9394234	AT5TE34085	.	-	HELITRONY3	Helitron	RC	146	short	1399	high	1800304	chromoarm	0	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	9394234	9394500	AT5TE34090	.	-	ARNOLDY1	MuDR	DNA	266	short	237	high	1800038	chromoarm	132	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9394500	9394524	AT5TE34095	.	+	ARNOLDY1	MuDR	DNA	24	tiny	237	high	1800014	chromoarm	398	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9394524	9397648	AT5TE34100	.	-	ARNOLDY2	MuDR	DNA	3124	medium	288	high	1796890	chromoarm	422	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	9397648	9397678	AT5TE34105	.	-	TNAT1A	.	DNA	30	tiny	162	medium	1796860	chromoarm	606	no-CHH	no-CHH	.	.	.	.	.
Chr5	9397678	9397915	AT5TE34110	.	+	HELITRONY3	Helitron	RC	237	short	1399	high	1796623	chromoarm	369	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	9410601	9410769	AT5TE34160	.	-	ATHAT1	HAT	DNA	168	short	105	medium	1783769	chromoarm	866	no-CHH	no-CHH	.	.	.	.	.
Chr5	9411004	9411143	AT5TE34165	.	-	ATHAT1	HAT	DNA	139	short	105	medium	1783395	chromoarm	1269	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	9412828	9413037	AT5TE34170	.	+	ATLINE1_6	L1	LINE	209	short	129	medium	1781501	chromoarm	3093	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	9413037	9415534	AT5TE34175	.	+	ATLINE1_6	L1	LINE	2497	medium	129	medium	1779004	chromoarm	2764	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	9415534	9415617	AT5TE34180	.	+	TA11	L1	LINE	83	tiny	157	medium	1778921	chromoarm	2681	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	9428891	9430016	AT5TE34230	.	-	ATREP10D	Helitron	RC	1125	short	1295	high	1764522	chromoarm	873	no-CHH	no-CHH	.	.	.	.	.
Chr5	9430352	9430827	AT5TE34235	.	-	ATREP11	Helitron	RC	475	short	841	high	1763711	chromoarm	124	no-CHH	no-CHH	.	.	.	.	.
Chr5	9442595	9444440	AT5TE34270	.	+	ATREP3	Helitron	RC	1845	short	1439	high	1750098	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9444440	9444522	AT5TE34275	.	+	ATREP10D	Helitron	RC	82	tiny	1295	high	1750016	chromoarm	596	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9459707	9459735	AT5TE34330	.	-	ARNOLDY2	MuDR	DNA	28	tiny	288	high	1734803	chromoarm	517	no-CHH	no-CHH	.	.	.	.	.
Chr5	9459735	9460349	AT5TE34335	.	-	ATREP11	Helitron	RC	614	short	841	high	1734189	chromoarm	115	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	9461122	9461438	AT5TE34340	.	+	ATDNAI27T9A	MuDR	DNA	316	short	116	medium	1733100	chromoarm	406	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	9461334	9462328	+	transcript_id-"72508761-eef4-4c3c-b973-268140e4ffa9|3"
Chr5	9462435	9462460	AT5TE34345	.	+	ATDNAI27T9C	MuDR	DNA	25	tiny	108	medium	1732078	chromoarm	1291	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	9462460	9462795	AT5TE34350	.	+	ATDNAI27T9C	MuDR	DNA	335	short	108	medium	1731743	chromoarm	956	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	9463318	9463499	AT5TE34355	.	+	ATDNAI27T9B	MuDR	DNA	181	short	43	low	1731039	chromoarm	252	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	9470414	9471278	AT5TE34380	.	+	ATREP15	Helitron	RC	864	short	1003	high	1723260	chromoarm	695	no-CHH	no-CHH	.	.	.	.	.
Chr5	9472122	9472654	AT5TE34385	.	+	ATREP10D	Helitron	RC	532	short	1295	high	1721884	chromoarm	11	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	9473793	9474519	AT5TE34390	.	+	ATREP3	Helitron	RC	726	short	1439	high	1720019	chromoarm	1340	no-CHH	no-CHH	.	.	.	.	.
Chr5	9484352	9484827	AT5TE34430	.	+	HELITRONY1E	Helitron	RC	475	short	447	high	1709711	chromoarm	80	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	9487419	9487451	AT5TE34435	.	+	ATREP15	Helitron	RC	32	tiny	1003	high	1707087	chromoarm	33	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	9487451	9488211	AT5TE34440	.	+	ATREP1	Helitron	RC	760	short	498	high	1706327	chromoarm	65	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	9488211	9488294	AT5TE34445	.	+	ATREP4	Helitron	RC	83	tiny	832	high	1706244	chromoarm	429	no-CHH	no-CHH	.	.	.	.	.
Chr5	9496689	9496738	AT5TE34470	.	+	ATREP10D	Helitron	RC	49	tiny	1295	high	1697800	chromoarm	1360	no-CHH	no-CHH	.	.	.	.	.
Chr5	9496738	9497809	AT5TE34475	.	+	ATREP19	.	DNA	1071	short	189	medium	1696729	chromoarm	289	no-CHH	no-RdDM	.	.	.	.	.
Chr5	9497809	9497830	AT5TE34480	.	+	HELITRONY2	Helitron	RC	21	tiny	198	medium	1696708	chromoarm	268	no-CHH	no-CHH	.	.	.	.	.
Chr5	9515879	9515978	AT5TE34550	.	-	HELITRONY1D	Helitron	RC	99	tiny	756	high	1678560	chromoarm	616	no-CHH	no-CHH	.	.	.	.	.
Chr5	9515978	9516059	AT5TE34555	.	+	HELITRONY1D	Helitron	RC	81	tiny	756	high	1678479	chromoarm	715	no-CHH	no-CHH	.	.	.	.	.
Chr5	9516059	9516312	AT5TE34560	.	-	DT1	Mariner	DNA	253	short	123	medium	1678226	chromoarm	796	no-CHH	no-CHH	.	.	.	.	.
Chr5	9516312	9517374	AT5TE34565	.	-	ATREP15	Helitron	RC	1062	short	1003	high	1677164	chromoarm	1049	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	9517374	9517394	AT5TE34570	.	+	BRODYAGA2	MuDR	DNA	20	tiny	525	high	1677144	chromoarm	2111	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	9525889	9525948	AT5TE34600	.	-	ATREP11	Helitron	RC	59	tiny	841	high	1668590	chromoarm	482	no-CHH	no-CHH	.	.	.	.	.
Chr5	9525948	9527315	AT5TE34605	.	-	ATREP10B	Helitron	RC	1367	short	491	high	1667223	chromoarm	425	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9527315	9527344	AT5TE34610	.	-	ATREP10B	Helitron	RC	29	tiny	491	high	1667194	chromoarm	396	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9527344	9527654	AT5TE34615	.	+	HELITRONY3	Helitron	RC	310	short	1399	high	1666884	chromoarm	86	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9527654	9527701	AT5TE34620	.	+	ATREP10D	Helitron	RC	47	tiny	1295	high	1666837	chromoarm	39	no-CHH	no-CHH	.	.	.	.	.
Chr5	9529241	9529423	AT5TE34625	.	-	ATHAT1	HAT	DNA	182	short	105	medium	1665115	chromoarm	179	no-CHH	no-CHH	.	.	.	.	.
Chr5	9543431	9543689	AT5TE34670	.	-	ATENSPM9	En-Spm	DNA	258	short	97	medium	1650849	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	9545559	9545708	AT5TE34675	.	+	ATREP1	Helitron	RC	150	short	498	high	1648830	chromoarm	924	.	.	.	.	.	.	.
Chr5	9545708	9546392	AT5TE34680	.	+	ATREP2A	Helitron	RC	684	short	116	medium	1648146	chromoarm	240	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9546392	9546572	AT5TE34685	.	-	VANDAL8	MuDR	DNA	180	short	123	medium	1647966	chromoarm	60	no-CHH	no-CHH	.	.	.	.	.
Chr5	9547886	9548317	AT5TE34690	.	-	ATREP5	Helitron	RC	431	short	624	high	1646221	chromoarm	224	no-CHH	no-CHH	.	.	.	.	.
Chr5	9551844	9552448	AT5TE34700	.	-	ATREP10B	Helitron	RC	604	short	491	high	1642090	chromoarm	1247	no-CHH	no-CHH	.	.	.	.	.
Chr5	9552595	9552803	AT5TE34705	.	-	RathE1_cons	.	RathE1_cons	208	short	213	high	1641735	chromoarm	1447	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9557279	9559986	AT5TE34715	.	-	ATREP3	Helitron	RC	2707	medium	1439	high	1634552	chromoarm	13	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	9559986	9560236	AT5TE34720	.	+	HELITRONY3	Helitron	RC	250	short	1399	high	1634302	chromoarm	2720	no-CHH	no-CHH	.	.	.	.	.
Chr5	9561910	9561934	AT5TE34725	.	-	VANDAL8	MuDR	DNA	24	tiny	123	medium	1632604	chromoarm	4072	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	9561934	9571088	AT5TE34730	.	-	VANDAL8	MuDR	DNA	9154	long	123	medium	1623450	chromoarm	0	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	9567403,9566774,9567461,9567403	9565964,9566586,9566668,9566698	-,-,-,-	transcript_id-"e1f63683-ed3e-4418-8cb1-0e458acbb127|4",transcript_id-"d717301c-93a8-4407-985e-d59cd74604d0|3",transcript_id-"74ded661-740e-4258-93d6-ce3edcdc8eaf|8",transcript_id-"6c57b213-14ed-46e8-9070-cf0b7ecd35fa|26"
Chr5	9571088	9571137	AT5TE34735	.	-	VANDAL8	MuDR	DNA	49	tiny	123	medium	1623401	chromoarm	47	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	9574273	9575059	AT5TE34745	.	-	ATHPOGON2	Pogo	DNA	786	short	27	low	1619479	chromoarm	198	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	9575059	9575157	AT5TE34750	.	+	ATREP1	Helitron	RC	98	tiny	498	high	1619381	chromoarm	984	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	9583063	9583934	AT5TE34780	.	+	SIMPLEGUY1	Harbinger	DNA	871	short	116	medium	1610604	chromoarm	311	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9588090	9588141	AT5TE34790	.	+	BRODYAGA1A	MuDR	DNA	51	tiny	586	high	1606397	chromoarm	252	no-CHH	no-CHH	.	.	.	.	.
Chr5	9588141	9588766	AT5TE34795	.	+	HELITRONY1D	Helitron	RC	625	short	756	high	1605772	chromoarm	303	no-CHH	no-CHH	.	.	.	.	.
Chr5	9588766	9588805	AT5TE34800	.	+	ATREP5	Helitron	RC	39	tiny	624	high	1605733	chromoarm	928	no-RdDM	no-CHH	.	.	.	.	.
Chr5	9589898	9590375	AT5TE34805	.	+	ATREP3	Helitron	RC	477	short	1439	high	1604163	chromoarm	2060	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	9590375	9595189	AT5TE34810	.	+	ATREP3	Helitron	RC	4814	medium	1439	high	1599349	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9595189	9596386	AT5TE34815	.	+	ATREP10A	Helitron	RC	1197	short	279	high	1598152	chromoarm	799	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	9596386	9596774	AT5TE34820	.	+	ATREP10D	Helitron	RC	388	short	1295	high	1597764	chromoarm	777	no-CHH	no-CHH	.	.	.	.	.
Chr5	9596784	9596829	AT5TE34825	.	+	ATREP3	Helitron	RC	45	tiny	1439	high	1597709	chromoarm	722	no-CHH	no-CHH	.	.	.	.	.
Chr5	9601050	9601428	AT5TE34835	.	+	ATTIRX1C	.	DNA	378	short	39	low	1593110	chromoarm	14	no-CHH	no-RdDM	.	.	.	.	.
Chr5	9601672	9603014	AT5TE34840	.	+	Unassigned	.	Unassigned	1342	short	.	low	1591524	chromoarm	83	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	9609621	9610014	AT5TE34860	.	-	ATREP10D	Helitron	RC	393	short	1295	high	1584524	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	9610014	9613665	AT5TE34865	.	-	ATREP3	Helitron	RC	3651	medium	1439	high	1580873	chromoarm	389	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9613665	9613714	AT5TE34870	.	+	ATREP3	Helitron	RC	49	tiny	1439	high	1580824	chromoarm	3833	no-CHH	no-CHH	.	.	.	.	.
Chr5	9613714	9613924	AT5TE34875	.	+	ATREP3	Helitron	RC	210	short	1439	high	1580614	chromoarm	3623	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	9613924	9613952	AT5TE34880	.	+	ATREP7	Helitron	RC	28	tiny	164	medium	1580586	chromoarm	3595	no-CHH	no-CHH	.	.	.	.	.
Chr5	9615915	9616045	AT5TE34885	.	-	ATREP9	Helitron	RC	130	short	201	high	1578493	chromoarm	1502	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	9616045	9617184	AT5TE34890	.	+	ATREP7	Helitron	RC	1139	short	164	medium	1577354	chromoarm	363	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9622950	9623271	AT5TE34910	.	-	ATREP15	Helitron	RC	321	short	1003	high	1571267	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	9623271	9623834	AT5TE34915	.	-	ATHPOGON1	Pogo	DNA	563	short	174	medium	1570704	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9623834	9623931	AT5TE34920	.	-	ATREP10D	Helitron	RC	97	tiny	1295	high	1570607	chromoarm	0	no-CHH	RDR6-RdDM	.	.	.	.	.
Chr5	9628243	9628892	AT5TE34930	.	+	HELITRONY3	Helitron	RC	649	short	1399	high	1565646	chromoarm	361	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	9633984	9634025	AT5TE34940	.	+	ATENSPM6	En-Spm	DNA	41	tiny	151	medium	1560513	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	9634025	9634508	AT5TE34945	.	+	VANDAL17	MuDR	DNA	483	short	178	medium	1560030	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	9635007	9635834	AT5TE34950	.	-	ATREP15	Helitron	RC	827	short	1003	high	1558704	chromoarm	50	no-CHH	no-CHH	.	.	.	.	.
Chr5	9635834	9635891	AT5TE34955	.	-	ATREP11	Helitron	RC	57	tiny	841	high	1558647	chromoarm	0	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	9637154	9637391	AT5TE34960	.	+	ATDNA12T3_2	.	DNA	237	short	660	high	1557147	chromoarm	270	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	9638932	9640878	AT5TE34965	.	+	HELITRONY3	Helitron	RC	1946	short	1399	high	1553660	chromoarm	2048	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	9640879	9640916	AT5TE34970	.	-	ATTIRX1B	.	DNA	38	tiny	44	low	1553622	chromoarm	3994	.	.	.	.	.	.	.
Chr5	9640916	9640956	AT5TE34975	.	-	HELITRONY3	Helitron	RC	40	tiny	1399	high	1553582	chromoarm	4032	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	9641504	9643917	AT5TE34980	.	-	Unassigned	.	Unassigned	2413	medium	.	low	1550621	chromoarm	4620	no-RdDM	no-RdDM	ExpressedAndAnnotated	9644220,9644222	9641347,9641831	-,-	transcript_id-"e84ce209-4c7f-4c0d-8793-8a201b64847b|8",transcript_id-"5486d4ca-8744-4ef7-b720-022d8a9729e1|6"
Chr5	9644119	9644233	AT5TE34985	.	-	ARNOLD2	MuDR	DNA	114	short	68	medium	1550305	chromoarm	4724	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	9644220,9644222	9641347,9641831	-,-	transcript_id-"e84ce209-4c7f-4c0d-8793-8a201b64847b|8",transcript_id-"5486d4ca-8744-4ef7-b720-022d8a9729e1|6"
Chr5	9645349	9646047	AT5TE34990	.	+	ARNOLD2	MuDR	DNA	698	short	68	medium	1548491	chromoarm	2910	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	9645475	9645735	AT5TE34995	.	-	DT1	Mariner	DNA	260	short	123	medium	1548803	chromoarm	3222	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	9649510	9650436	AT5TE35005	.	-	BRODYAGA2	MuDR	DNA	926	short	525	high	1544102	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	9652666	9652746	AT5TE35010	.	+	RathE3_cons	.	RathE3_cons	81	tiny	104	medium	1541792	chromoarm	0	.	.	.	.	.	.	.
Chr5	9653659	9654299	AT5TE35015	.	-	BRODYAGA1	MuDR	DNA	640	short	251	high	1540239	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	9664363	9666461	AT5TE35050	.	-	ATREP15	Helitron	RC	2098	medium	1003	high	1528077	chromoarm	849	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	9666461	9666642	AT5TE35055	.	+	HELITRONY3	Helitron	RC	181	short	1399	high	1527896	chromoarm	668	no-CHH	no-CHH	.	.	.	.	.
Chr5	9676032	9676149	AT5TE35080	.	-	ATENSPM5	En-Spm	DNA	117	short	111	medium	1518389	chromoarm	0	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	9686108	9687387	AT5TE35120	.	+	META1	Copia	LTR	1279	short	138	medium	1507151	chromoarm	82	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9697215	9697451	AT5TE35160	.	-	ATREP6	Helitron	RC	236	short	181	medium	1497087	chromoarm	61	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	9697451	9698019	AT5TE35165	.	+	HELITRONY1D	Helitron	RC	568	short	756	high	1496519	chromoarm	297	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9698019	9698061	AT5TE35170	.	+	ATREP3	Helitron	RC	42	tiny	1439	high	1496477	chromoarm	865	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	9698618	9698706	AT5TE35175	.	-	ATREP10A	Helitron	RC	88	tiny	279	high	1495832	chromoarm	1464	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9698722	9698953	AT5TE35180	.	+	HELITRON4	Helitron	RC	231	short	199	medium	1495585	chromoarm	1568	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	9698953	9702597	AT5TE35185	.	+	HELITRON4	Helitron	RC	3644	medium	199	medium	1491941	chromoarm	532	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	9702599	9702898	AT5TE35190	.	+	ATREP10C	Helitron	RC	299	short	123	medium	1491640	chromoarm	231	no-CHH	no-CHH	.	.	.	.	.
Chr5	9704778	9704890	AT5TE35195	.	-	ATLINE1A	L1	LINE	112	short	289	high	1489648	chromoarm	125	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9705290	9705358	AT5TE35200	.	+	ATREP3	Helitron	RC	68	tiny	1439	high	1489180	chromoarm	637	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	9705358	9706534	AT5TE35205	.	+	HELITRONY3	Helitron	RC	1176	short	1399	high	1488004	chromoarm	0	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	9706534	9706882	AT5TE35210	.	+	HELITRONY1A	Helitron	RC	348	short	271	high	1487656	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	9706882	9707111	AT5TE35215	.	+	HELITRONY1B	Helitron	RC	229	short	414	high	1487427	chromoarm	162	no-CHH	no-CHH	.	.	.	.	.
Chr5	9707111	9707644	AT5TE35220	.	-	BRODYAGA1	MuDR	DNA	533	short	251	high	1486894	chromoarm	391	no-CHH	no-CHH	.	.	.	.	.
Chr5	9707644	9707752	AT5TE35225	.	+	HELITRONY1B	Helitron	RC	108	short	414	high	1486786	chromoarm	924	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	9707752	9708848	AT5TE35230	.	-	ATMU7	MuDR	DNA	1096	short	32	low	1485690	chromoarm	1032	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	9708031,9708031,9708031,9708031	9708764,9708811,9708813,9708866	+,+,+,+	transcript_id-"591858bd-2c71-45df-ba27-103d29f54aad|5",transcript_id-"2f1d6632-c816-4dc0-9a5e-044a46d799e0|6",transcript_id-"8c80f20d-8c15-4526-8b2b-9acfca23676e|8",transcript_id-"378f8a64-ab87-498f-b4cf-610edb090d60|6"
Chr5	9708848	9708961	AT5TE35235	.	-	VANDAL7	MuDR	DNA	113	short	36	low	1485577	chromoarm	2128	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr5	9709182	9709433	AT5TE35240	.	-	ATMU6	MuDR	DNA	251	short	26	low	1485105	chromoarm	2462	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	9709433	9709475	AT5TE35245	.	-	ATMU11	MuDR	DNA	42	tiny	20	low	1485063	chromoarm	2713	no-CHH	no-RdDM	.	.	.	.	.
Chr5	9709513	9709982	AT5TE35250	.	+	BRODYAGA2	MuDR	DNA	469	short	525	high	1484556	chromoarm	2793	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9710376	9710410	AT5TE35255	.	-	BRODYAGA2	MuDR	DNA	34	tiny	525	high	1484128	chromoarm	2762	DCL3-RdDM	no-RdDM	.	.	.	.	.
Chr5	9710410	9710844	AT5TE35260	.	-	BRODYAGA2	MuDR	DNA	434	short	525	high	1483694	chromoarm	2328	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	9710859	9712773	AT5TE35265	.	-	ATMU5	MuDR	DNA	1914	short	24	low	1481765	chromoarm	399	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	9712498	9710794	-	transcript_id-"0fe031d5-b6a9-4899-bef7-5ddc76364eb0|3"
Chr5	9716501	9717030	AT5TE35275	.	+	ATHATN3	HAT	DNA	529	short	70	medium	1477508	chromoarm	257	no-CHH	no-CHH	.	.	.	.	.
Chr5	9718898	9719157	AT5TE35280	.	-	TSCL	.	LINE?	259	short	81	medium	1475381	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9720851	9721507	AT5TE35285	.	+	ATSINE2A	.	SINE	656	short	33	low	1473031	chromoarm	0	no-RdDM	no-CHH	.	.	.	.	.
Chr5	9721507	9721532	AT5TE35290	.	+	ATREP10C	Helitron	RC	25	tiny	123	medium	1473006	chromoarm	410	no-RdDM	no-CHH	.	.	.	.	.
Chr5	9721532	9722317	AT5TE35295	.	+	ATREP10C	Helitron	RC	785	short	123	medium	1472221	chromoarm	435	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	9722332	9722382	AT5TE35300	.	+	ATREP10D	Helitron	RC	50	tiny	1295	high	1472156	chromoarm	433	no-CHH	no-CHH	.	.	.	.	.
Chr5	9738734	9741902	AT5TE35360	.	-	VANDAL2N1	MuDR	DNA	3168	medium	51	medium	1452636	chromoarm	713	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	9740977	9741454	AT5TE35365	.	+	ATREP15	Helitron	RC	477	short	1003	high	1453084	chromoarm	1161	no-RdDM	no-CHH	.	.	.	.	.
Chr5	9741454	9741478	AT5TE35370	.	-	ATREP10D	Helitron	RC	24	tiny	1295	high	1453060	chromoarm	1137	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	9741903	9741947	AT5TE35375	.	-	VANDAL2N1	MuDR	DNA	45	tiny	51	medium	1452591	chromoarm	668	.	.	.	.	.	.	.
Chr5	9741947	9742012	AT5TE35380	.	-	VANDAL2N1	MuDR	DNA	65	tiny	51	medium	1452526	chromoarm	603	no-CHH	no-CHH	.	.	.	.	.
Chr5	9747550	9747741	AT5TE35400	.	+	ATREP6	Helitron	RC	191	short	181	medium	1446797	chromoarm	755	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	9748188	9748359	AT5TE35405	.	+	BRODYAGA1A	MuDR	DNA	171	short	586	high	1446179	chromoarm	1393	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	9748640	9750073	AT5TE35410	.	+	ATREP1	Helitron	RC	1433	short	498	high	1444465	chromoarm	1845	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	9750073	9751443	AT5TE35415	.	+	ATREP10D	Helitron	RC	1370	short	1295	high	1443095	chromoarm	558	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9751955	9752837	AT5TE35420	.	+	VANDAL11	MuDR	DNA	882	short	18	low	1441701	chromoarm	0	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	9753527	9753618	AT5TE35425	.	-	ATREP10D	Helitron	RC	91	tiny	1295	high	1440920	chromoarm	123	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9753627	9755428	AT5TE35430	.	+	ATREP10A	Helitron	RC	1801	short	279	high	1439110	chromoarm	223	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9755429	9755510	AT5TE35435	.	-	ATREP10D	Helitron	RC	81	tiny	1295	high	1439028	chromoarm	2025	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9757609	9757929	AT5TE35440	.	+	HELITRON2	Helitron	RC	320	short	194	medium	1436609	pericentromeric	4205	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	9757929	9757954	AT5TE35445	.	+	ATREP5	Helitron	RC	25	tiny	624	high	1436584	pericentromeric	4525	no-CHH	no-CHH	.	.	.	.	.
Chr5	9757968	9758005	AT5TE35450	.	+	VANDAL8	MuDR	DNA	37	tiny	123	medium	1436533	pericentromeric	4564	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	9758005	9758640	AT5TE35455	.	+	VANDAL17	MuDR	DNA	635	short	178	medium	1435898	pericentromeric	4601	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	9759188	9759311	AT5TE35460	.	+	VANDAL7	MuDR	DNA	123	short	36	low	1435227	pericentromeric	5540	no-CHH	no-CHH	.	.	.	.	.
Chr5	9759447	9759551	AT5TE35465	.	-	HELITRONY3	Helitron	RC	104	short	1399	high	1434987	pericentromeric	5300	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	9759551	9760300	AT5TE35470	.	-	ATREP11	Helitron	RC	749	short	841	high	1434238	pericentromeric	4551	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	9760300	9760562	AT5TE35475	.	+	BRODYAGA2	MuDR	DNA	262	short	525	high	1433976	pericentromeric	4289	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	9761982	9762056	AT5TE35480	.	-	ATREP4	Helitron	RC	74	tiny	832	high	1432482	pericentromeric	2795	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	9762057	9762356	AT5TE35485	.	-	ATREP11	Helitron	RC	300	short	841	high	1432182	pericentromeric	2495	.	.	.	.	.	.	.
Chr5	9762357	9762389	AT5TE35490	.	-	ATREP11A	Helitron	RC	33	tiny	95	medium	1432149	pericentromeric	2462	.	.	.	.	.	.	.
Chr5	9762389	9762493	AT5TE35495	.	-	ATREP11	Helitron	RC	104	short	841	high	1432045	pericentromeric	2358	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	9762493	9763843	AT5TE35500	.	-	ATREP11	Helitron	RC	1350	short	841	high	1430695	pericentromeric	1008	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9763843	9763961	AT5TE35505	.	+	ATREP10D	Helitron	RC	118	short	1295	high	1430577	pericentromeric	890	no-CHH	no-CHH	.	.	.	.	.
Chr5	9768747	9769135	AT5TE35515	.	-	HELITRON5	Helitron	RC	388	short	56	medium	1425403	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	9769977	9770082	AT5TE35520	.	-	ATREP3	Helitron	RC	105	short	1439	high	1424456	pericentromeric	271	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9770082	9770607	AT5TE35525	.	-	ATREP14	Helitron	RC	525	short	47	low	1423931	pericentromeric	376	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9770607	9770661	AT5TE35530	.	-	BRODYAGA1	MuDR	DNA	54	tiny	251	high	1423877	pericentromeric	901	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	9770661	9770696	AT5TE35535	.	+	VANDAL8	MuDR	DNA	35	tiny	123	medium	1423842	pericentromeric	955	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	9770911	9771043	AT5TE35540	.	+	ATHATN3	HAT	DNA	132	short	70	medium	1423495	pericentromeric	718	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	9775169	9775713	AT5TE35550	.	-	HELITRONY1D	Helitron	RC	544	short	756	high	1418825	pericentromeric	387	no-CHH	no-CHH	.	.	.	.	.
Chr5	9775713	9775820	AT5TE35555	.	-	HELITRONY3	Helitron	RC	107	short	1399	high	1418718	pericentromeric	280	no-CHH	no-CHH	.	.	.	.	.
Chr5	9785686	9785929	AT5TE35590	.	-	VANDAL17	MuDR	DNA	243	short	178	medium	1408609	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	9799294	9800993	AT5TE35640	.	+	ATREP10D	Helitron	RC	1699	short	1295	high	1393545	pericentromeric	657	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9800993	9801038	AT5TE35645	.	+	ATREP4	Helitron	RC	45	tiny	832	high	1393500	pericentromeric	2356	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	9801392	9802122	AT5TE35650	.	-	HELITRONY3	Helitron	RC	730	short	1399	high	1392416	pericentromeric	1673	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	9801642	9802008	AT5TE35655	.	+	HELITRONY1D	Helitron	RC	366	short	756	high	1392530	pericentromeric	1787	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	9802122	9802916	AT5TE35660	.	-	SIMPLEHAT1	HAT	DNA	794	short	56	medium	1391622	pericentromeric	879	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9802916	9802966	AT5TE35665	.	-	SIMPLEHAT1	HAT	DNA	50	tiny	56	medium	1391572	pericentromeric	829	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	9806653	9806700	AT5TE35675	.	+	ATREP10A	Helitron	RC	47	tiny	279	high	1387838	pericentromeric	840	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	9806700	9807278	AT5TE35680	.	+	ATREP10B	Helitron	RC	578	short	491	high	1387260	pericentromeric	262	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	9808657	9809535	AT5TE35685	.	-	ATTIR16T3A	.	DNA	878	short	106	medium	1385003	pericentromeric	609	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	9809019	9809373	AT5TE35690	.	+	ATLINE1_3A	L1	LINE	354	short	160	medium	1385165	pericentromeric	971	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	9811059	9811289	AT5TE35695	.	+	BRODYAGA2	MuDR	DNA	230	short	525	high	1383249	pericentromeric	1779	no-CHH	no-CHH	.	.	.	.	.
Chr5	9811289	9811791	AT5TE35700	.	+	BRODYAGA2	MuDR	DNA	502	short	525	high	1382747	pericentromeric	1277	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	9811791	9812441	AT5TE35705	.	+	ATRE1	Copia	LTR	650	short	22	low	1382097	pericentromeric	627	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	9817472	9818733	AT5TE35715	.	-	ATREP3	Helitron	RC	1261	short	1439	high	1375805	pericentromeric	168	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	9818733	9818769	AT5TE35720	.	-	TNAT2A	.	DNA	36	tiny	38	low	1375769	pericentromeric	1429	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9827135	9827155	AT5TE35750	.	+	ATREP4	Helitron	RC	20	tiny	832	high	1367383	pericentromeric	266	no-CHH	no-CHH	.	.	.	.	.
Chr5	9827155	9827263	AT5TE35755	.	+	ATREP6	Helitron	RC	108	short	181	medium	1367275	pericentromeric	286	no-CHH	no-CHH	.	.	.	.	.
Chr5	9827263	9828183	AT5TE35760	.	-	HELITRONY1D	Helitron	RC	920	short	756	high	1366355	pericentromeric	246	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9834883	9835021	AT5TE35780	.	+	ATREP10	Helitron	RC	138	short	63	medium	1359517	pericentromeric	1144	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	9835021	9835578	AT5TE35785	.	-	ATHATN5	HAT	DNA	557	short	42	low	1358960	pericentromeric	587	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	9839498	9840747	AT5TE35795	.	-	HELITRONY1B	Helitron	RC	1249	short	414	high	1353791	pericentromeric	177	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	9840747	9840798	AT5TE35800	.	-	HELITRONY1B	Helitron	RC	51	tiny	414	high	1353740	pericentromeric	126	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	9844273	9844906	AT5TE35810	.	-	ATHATN2	HAT	DNA	633	short	46	low	1349632	pericentromeric	469	DCL3-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9845196	9845348	AT5TE35815	.	-	ATCOPIA43	Copia	LTR	152	short	29	low	1349190	pericentromeric	1392	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	9848062	9848965	AT5TE35825	.	+	ATREP3	Helitron	RC	903	short	1439	high	1345573	pericentromeric	4258	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	9848965	9849453	AT5TE35830	.	+	ATREP10D	Helitron	RC	488	short	1295	high	1345085	pericentromeric	5161	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	9849453	9849992	AT5TE35835	.	+	ATREP10B	Helitron	RC	539	short	491	high	1344546	pericentromeric	5649	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr5	9849992	9850044	AT5TE35840	.	-	HELITRONY1E	Helitron	RC	52	tiny	447	high	1344494	pericentromeric	5782	no-CHH	no-CHH	.	.	.	.	.
Chr5	9853883	9854269	AT5TE35850	.	+	HELITRONY3	Helitron	RC	386	short	1399	high	1340269	pericentromeric	1557	no-CHH	no-CHH	.	.	.	.	.
Chr5	9854269	9854346	AT5TE35855	.	+	ATREP1	Helitron	RC	77	tiny	498	high	1340192	pericentromeric	1480	no-RdDM	no-CHH	.	.	.	.	.
Chr5	9854347	9854902	AT5TE35860	.	+	ATREP2	Helitron	RC	555	short	164	medium	1339636	pericentromeric	924	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	9854902	9855815	AT5TE35865	.	+	HELITRONY3	Helitron	RC	913	short	1399	high	1338723	pericentromeric	11	no-CHH	no-CHH	.	.	.	.	.
Chr5	9856386	9856937	AT5TE35870	.	-	ARNOLDY1	MuDR	DNA	551	short	237	high	1337601	pericentromeric	200	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	9856937	9857108	AT5TE35875	.	+	ATHILA4C	Gypsy	LTR	171	short	206	high	1337430	pericentromeric	751	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	9857108	9857131	AT5TE35880	.	-	ARNOLDY1	MuDR	DNA	23	tiny	237	high	1337407	pericentromeric	922	no-RdDM	no-CHH	.	.	.	.	.
Chr5	9857131	9857586	AT5TE35885	.	+	HELITRONY1C	Helitron	RC	455	short	120	medium	1336952	pericentromeric	945	no-RdDM	no-CHH	.	.	.	.	.
Chr5	9858352	9859066	AT5TE35890	.	+	ATREP2	Helitron	RC	714	short	164	medium	1335472	pericentromeric	1517	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9859066	9859500	AT5TE35895	.	-	ATREP10B	Helitron	RC	434	short	491	high	1335038	pericentromeric	1083	no-CHH	no-CHH	.	.	.	.	.
Chr5	9859500	9859719	AT5TE35900	.	-	ATREP4	Helitron	RC	219	short	832	high	1334819	pericentromeric	864	no-CHH	no-CHH	.	.	.	.	.
Chr5	9865008	9865919	AT5TE35910	.	-	ATREP10D	Helitron	RC	911	short	1295	high	1328619	pericentromeric	180	no-CHH	no-CHH	.	.	.	.	.
Chr5	9865920	9867724	AT5TE35915	.	+	ATREP1	Helitron	RC	1805	short	498	high	1326814	pericentromeric	1091	.	.	.	.	.	.	.
Chr5	9867724	9868190	AT5TE35920	.	+	HELITRONY1D	Helitron	RC	466	short	756	high	1326348	pericentromeric	2896	no-CHH	no-CHH	.	.	.	.	.
Chr5	9868190	9868369	AT5TE35925	.	-	HELITRONY3	Helitron	RC	179	short	1399	high	1326169	pericentromeric	3362	no-CHH	no-CHH	.	.	.	.	.
Chr5	9868371	9869870	AT5TE35930	.	+	ATLINE1_4	L1	LINE	1499	short	102	medium	1324668	pericentromeric	3298	no-CHH	no-CHH	.	.	.	.	.
Chr5	9869870	9870122	AT5TE35935	.	+	ATLINE1_6	L1	LINE	252	short	129	medium	1324416	pericentromeric	3046	no-CHH	no-CHH	.	.	.	.	.
Chr5	9870124	9870360	AT5TE35940	.	+	TA11	L1	LINE	236	short	157	medium	1324178	pericentromeric	2808	no-CHH	no-CHH	.	.	.	.	.
Chr5	9870360	9870433	AT5TE35945	.	+	TA11	L1	LINE	73	tiny	157	medium	1324105	pericentromeric	2735	no-CHH	no-CHH	.	.	.	.	.
Chr5	9871828	9872479	AT5TE35950	.	+	HELITRONY1D	Helitron	RC	651	short	756	high	1322059	pericentromeric	689	PolIV-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	9872566,9872564,9872566,9872563,9872564,9872564	9871116,9872071,9872166,9872228,9872321,9872377	-,-,-,-,-,-	transcript_id-"637f6cea-57df-47c7-8573-22819e06847e|7",transcript_id-"03ff04a6-c18b-4ee5-ba31-8f08ffc1b548|28",transcript_id-"f4604ec4-3deb-4956-a3d6-ed68c7a6c555|7",transcript_id-"1a8e6162-a2d4-45df-b86c-2c1f29a7b40f|7",transcript_id-"cad16cbb-da28-4cdb-8784-331a4fd0e849|10",transcript_id-"dcf614fa-9ee6-4001-9cf1-2e61d9adf252|20"
Chr5	9876498	9877104	AT5TE35960	.	+	ATREP10C	Helitron	RC	606	short	123	medium	1317434	pericentromeric	56	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	9877728	9877862	AT5TE35965	.	+	ATDNA12T3_2	.	DNA	134	short	660	high	1316676	pericentromeric	1128	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	9877862	9877979	AT5TE35970	.	+	ATDNA12T3_2	.	DNA	117	short	660	high	1316559	pericentromeric	1011	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9879001	9879375	AT5TE35975	.	+	ATMU1	MuDR	DNA	374	short	59	medium	1315163	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	9882304	9882698	AT5TE35985	.	-	ATDNA2T9C	MuDR	DNA	394	short	242	high	1311840	pericentromeric	498	no-CHH	no-CHH	.	.	.	.	.
Chr5	9882719	9883027	AT5TE35990	.	-	ATDNA2T9C	MuDR	DNA	308	short	242	high	1311511	pericentromeric	913	no-CHH	no-CHH	.	.	.	.	.
Chr5	9883027	9883144	AT5TE35995	.	-	ATHATN6	HAT	DNA	117	short	43	low	1311394	pericentromeric	1221	no-CHH	no-CHH	.	.	.	.	.
Chr5	9883225	9883403	AT5TE36000	.	-	ATCOPIA96	Copia	LTR	178	short	16	low	1311135	pericentromeric	1419	no-CHH	no-CHH	.	.	.	.	.
Chr5	9883403	9885686	AT5TE36005	.	-	ATREP10D	Helitron	RC	2283	medium	1295	high	1308852	pericentromeric	221	no-CHH	no-CHH	.	.	.	.	.
Chr5	9885686	9885813	AT5TE36010	.	+	HELITRONY1E	Helitron	RC	127	short	447	high	1308725	pericentromeric	94	no-CHH	no-CHH	.	.	.	.	.
Chr5	9885813	9885854	AT5TE36015	.	-	ATREP15	Helitron	RC	41	tiny	1003	high	1308684	pericentromeric	53	no-CHH	no-CHH	.	.	.	.	.
Chr5	9886827	9887557	AT5TE36020	.	+	ATHPOGON1	Pogo	DNA	730	short	174	medium	1306981	pericentromeric	83	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	9887566	9887962	AT5TE36025	.	-	ATREP10D	Helitron	RC	396	short	1295	high	1306576	pericentromeric	822	no-CHH	no-CHH	.	.	.	.	.
Chr5	9888892	9889049	AT5TE36030	.	-	RathE1_cons	.	RathE1_cons	157	short	213	high	1305489	pericentromeric	2148	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9889606	9890097	AT5TE36035	.	-	ATCOPIA3	Copia	LTR	491	short	8	low	1304441	pericentromeric	2862	no-CHH	no-CHH	.	.	.	.	.
Chr5	9890100	9898036	AT5TE36040	.	-	ATGP1	Gypsy	LTR	7936	long	144	medium	1296502	pericentromeric	3356	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	9898671	9899204	AT5TE36045	.	+	ATREP15	Helitron	RC	533	short	1003	high	1295334	pericentromeric	4232	no-CHH	no-CHH	.	.	.	.	.
Chr5	9899204	9899251	AT5TE36050	.	+	ATHPOGON3	Pogo	DNA	47	tiny	118	medium	1295287	pericentromeric	4185	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	9899251	9900106	AT5TE36055	.	-	ATHPOGON3	Pogo	DNA	855	short	118	medium	1294432	pericentromeric	3330	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	9900106	9900127	AT5TE36060	.	-	ATHPOGON1	Pogo	DNA	21	tiny	174	medium	1294411	pericentromeric	3309	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	9900127	9900359	AT5TE36065	.	-	ATREP10B	Helitron	RC	232	short	491	high	1294179	pericentromeric	3077	no-CHH	no-CHH	.	.	.	.	.
Chr5	9903895	9904083	AT5TE36075	.	-	ATLANTYS3	Gypsy	LTR	188	short	142	medium	1290455	pericentromeric	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	9905891	9908008	AT5TE36080	.	-	ATLANTYS3	Gypsy	LTR	2117	medium	142	medium	1286530	pericentromeric	544	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	9908052	9908725	AT5TE36085	.	-	ATLANTYS1	Gypsy	LTR	673	short	153	medium	1285813	pericentromeric	2705	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	9908725	9908765	AT5TE36090	.	-	ATLANTYS2	Gypsy	LTR	40	tiny	179	medium	1285773	pericentromeric	3378	no-RdDM	no-CHH	.	.	.	.	.
Chr5	9910298	9911640	AT5TE36095	.	-	ATREP3	Helitron	RC	1342	short	1439	high	1282898	pericentromeric	4951	no-CHH	no-CHH	.	.	.	.	.
Chr5	9911640	9911663	AT5TE36100	.	+	BRODYAGA2	MuDR	DNA	23	tiny	525	high	1282875	pericentromeric	6293	no-CHH	no-CHH	.	.	.	.	.
Chr5	9912194	9912239	AT5TE36105	.	+	ATREP10D	Helitron	RC	45	tiny	1295	high	1282299	pericentromeric	6847	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	9912239	9913146	AT5TE36110	.	-	ATREP1	Helitron	RC	907	short	498	high	1281392	pericentromeric	6892	no-CHH	no-CHH	.	.	.	.	.
Chr5	9914372	9917173	AT5TE36115	.	+	ATLINE2	L1	LINE	2801	medium	138	medium	1277365	pericentromeric	9025	no-CHH	no-CHH	.	.	.	.	.
Chr5	9917173	9917251	AT5TE36120	.	+	ATLINEIII	L1	LINE	78	tiny	196	medium	1277287	pericentromeric	11826	no-CHH	no-CHH	.	.	.	.	.
Chr5	9918313	9918605	AT5TE36125	.	-	ATLINE1A	L1	LINE	292	short	289	high	1275933	pericentromeric	12966	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9918684	9919072	AT5TE36130	.	+	HELITRONY3	Helitron	RC	388	short	1399	high	1275466	pericentromeric	13337	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9919072	9919100	AT5TE36135	.	+	ARNOLDY1	MuDR	DNA	28	tiny	237	high	1275438	pericentromeric	13725	no-CHH	no-CHH	.	.	.	.	.
Chr5	9921542	9922445	AT5TE36140	.	-	ATMU11	MuDR	DNA	903	short	20	low	1272093	pericentromeric	16195	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	9922445	9922534	AT5TE36145	.	-	ATMU1	MuDR	DNA	89	tiny	59	medium	1272004	pericentromeric	17098	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	9927058	9927342	AT5TE36155	.	+	ATLINEIII	L1	LINE	284	short	196	medium	1267196	pericentromeric	13393	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	9928081	9929673	AT5TE36160	.	+	ATLINE2	L1	LINE	1592	short	138	medium	1264865	pericentromeric	11062	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	9930879	9932431	AT5TE36165	.	+	HELITRONY3	Helitron	RC	1552	short	1399	high	1262107	pericentromeric	8304	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	9932431	9932464	AT5TE36170	.	+	ATREP10D	Helitron	RC	33	tiny	1295	high	1262074	pericentromeric	8271	no-CHH	no-CHH	.	.	.	.	.
Chr5	9937699	9937891	AT5TE36180	.	+	VANDAL14	MuDR	DNA	192	short	25	low	1256647	pericentromeric	2844	no-CHH	no-RdDM	.	.	.	.	.
Chr5	9945112	9945249	AT5TE36210	.	-	ATHPOGON1	Pogo	DNA	137	short	174	medium	1249289	pericentromeric	605	no-CHH	no-CHH	.	.	.	.	.
Chr5	9945249	9946780	AT5TE36215	.	+	HELITRONY1B	Helitron	RC	1531	short	414	high	1247758	pericentromeric	742	no-CHH	no-CHH	.	.	.	.	.
Chr5	9946782	9947195	AT5TE36220	.	+	ATREP5	Helitron	RC	413	short	624	high	1247343	pericentromeric	2275	no-CHH	no-CHH	.	.	.	.	.
Chr5	9948569	9948730	AT5TE36225	.	+	ATREP12	Helitron	RC	161	short	22	low	1245808	pericentromeric	4062	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	9949204	9954436	AT5TE36230	.	+	ATCOPIA86	Copia	LTR	5232	long	7	low	1240102	pericentromeric	3762	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	9950302,9953998,9954008,9949607	9949138,9949150,9949158,9951383	-,-,-,+	transcript_id-"183a7653-78fb-46e2-a065-075fffa383f2|5",transcript_id-"944bc7ad-3643-4975-8d8b-47e8cd003d6c|3",transcript_id-"35709dfc-c699-43e7-ba33-25d52463fe03|3",transcript_id-"2a114282-afaa-42cc-9ce5-3cae272a17a6|9"
Chr5	9956858	9957640	AT5TE36235	.	-	SADHU	.	Unassigned	782	short	16	low	1236898	pericentromeric	558	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	9957625,9956931	9956858,9957707	-,+	transcript_id-"6947837f-b21f-45b5-bd87-84d8d87009d8|18",transcript_id-"94cc5a4f-1a89-474a-8507-aaf1e942b531|9"
Chr5	9961297	9962327	AT5TE36245	.	-	ATREP10D	Helitron	RC	1030	short	1295	high	1232211	pericentromeric	1078	no-CHH	no-CHH	.	.	.	.	.
Chr5	9962327	9962493	AT5TE36250	.	+	ATREP10C	Helitron	RC	166	short	123	medium	1232045	pericentromeric	2108	no-CHH	no-CHH	.	.	.	.	.
Chr5	9962493	9962886	AT5TE36255	.	-	ATREP10D	Helitron	RC	393	short	1295	high	1231652	pericentromeric	2274	no-CHH	no-CHH	.	.	.	.	.
Chr5	9962886	9965753	AT5TE36260	.	-	ATREP3	Helitron	RC	2867	medium	1439	high	1228785	pericentromeric	2667	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9965753	9965808	AT5TE36265	.	-	META1	Copia	LTR	55	tiny	138	medium	1228730	pericentromeric	5534	no-CHH	no-CHH	.	.	.	.	.
Chr5	9965808	9965830	AT5TE36270	.	-	HELITRONY1B	Helitron	RC	22	tiny	414	high	1228708	pericentromeric	5589	no-CHH	no-CHH	.	.	.	.	.
Chr5	9971041	9971065	AT5TE36280	.	-	ATREP4	Helitron	RC	24	tiny	832	high	1223473	pericentromeric	3401	no-CHH	no-CHH	.	.	.	.	.
Chr5	9971065	9971119	AT5TE36285	.	-	ATREP15	Helitron	RC	54	tiny	1003	high	1223419	pericentromeric	3347	no-CHH	no-CHH	.	.	.	.	.
Chr5	9971119	9972131	AT5TE36290	.	-	ATREP5	Helitron	RC	1012	short	624	high	1222407	pericentromeric	2335	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9972131	9972299	AT5TE36295	.	+	ATREP15	Helitron	RC	168	short	1003	high	1222239	pericentromeric	2167	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	9973453	9974417	AT5TE36300	.	-	ATREP4	Helitron	RC	964	short	832	high	1220121	pericentromeric	49	no-RdDM	no-CHH	.	.	.	.	.
Chr5	9978472	9978587	AT5TE36310	.	-	ATREP1	Helitron	RC	115	short	498	high	1215951	pericentromeric	871	no-CHH	no-CHH	.	.	.	.	.
Chr5	9978587	9979201	AT5TE36315	.	-	ATREP2A	Helitron	RC	614	short	116	medium	1215337	pericentromeric	986	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	9979201	9979289	AT5TE36320	.	-	ATREP14	Helitron	RC	88	tiny	47	low	1215249	pericentromeric	1600	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	9979289	9979316	AT5TE36325	.	-	ATREP15	Helitron	RC	27	tiny	1003	high	1215222	pericentromeric	1688	PolIV-and-RDR6-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	9979367	9981876	AT5TE36330	.	-	ATCOPIA9	Copia	LTR	2509	medium	9	low	1212662	pericentromeric	1766	no-RdDM	no-RdDM	ExpressedAndAnnotated	9981900	9981716	-	transcript_id-"2299439a-023b-4258-9729-eb560fda48f0|3"
Chr5	9981876	9983228	AT5TE36335	.	-	ATCOPIA19	Copia	LTR	1352	short	4	low	1211310	pericentromeric	1545	no-RdDM	no-RdDM	ExpressedAndAnnotated	9982926,9983657	9981684,9982889	-,-	transcript_id-"8e4d6780-0a58-4861-b9d5-185c18f6f182|69",transcript_id-"6d0199f1-ed87-4b30-8146-9a012912b6f2|16"
Chr5	9983228	9983248	AT5TE36340	.	-	ATCOPIA19	Copia	LTR	20	tiny	4	low	1211290	pericentromeric	1525	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	9989487	9989739	AT5TE36360	.	+	ATHPOGON3	Pogo	DNA	252	short	118	medium	1204799	pericentromeric	1945	no-CHH	no-CHH	.	.	.	.	.
Chr5	9989739	9990606	AT5TE36365	.	+	ATREP11	Helitron	RC	867	short	841	high	1203932	pericentromeric	1078	no-RdDM	no-CHH	.	.	.	.	.
Chr5	9992797	9992887	AT5TE36370	.	+	ATREP10A	Helitron	RC	90	tiny	279	high	1201651	pericentromeric	27	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	9992888	9993092	AT5TE36375	.	-	HELITRONY3	Helitron	RC	205	short	1399	high	1201446	pericentromeric	117	.	.	.	.	.	.	.
Chr5	9993092	9994980	AT5TE36380	.	+	ARNOLDY2	MuDR	DNA	1888	short	288	high	1199558	pericentromeric	322	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9994980	9995504	AT5TE36385	.	+	HELITRONY3	Helitron	RC	524	short	1399	high	1199034	pericentromeric	2210	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	9995504	9995659	AT5TE36390	.	+	ARNOLDY1	MuDR	DNA	155	short	237	high	1198879	pericentromeric	2734	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9995659	9997438	AT5TE36395	.	-	ATGP1	Gypsy	LTR	1779	short	144	medium	1197100	pericentromeric	2889	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	9997438	10002109	AT5TE36400	.	+	ATREP5	Helitron	RC	4671	medium	624	high	1192429	pericentromeric	0	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr5	9997749	10000995	AT5TE36405	.	-	ATGP8	Gypsy	LTR	3246	medium	92	medium	1193543	pericentromeric	594	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	10000969	10000774	-	transcript_id-"343e6128-b810-4265-9de3-7ee8d9812cec|3"
Chr5	9999580	10000540	AT5TE36410	.	-	BRODYAGA2	MuDR	DNA	960	short	525	high	1193998	pericentromeric	1049	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	10002246	10002588	AT5TE36415	.	+	VANDAL12	MuDR	DNA	342	short	37	low	1191950	pericentromeric	510	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	10004084	10004244	AT5TE36420	.	-	ATMU10	MuDR	DNA	160	short	87	medium	1190294	pericentromeric	475	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	10018688	10019252	AT5TE36470	.	+	ATCOPIA95	Copia	LTR	564	short	72	medium	1175286	pericentromeric	423	DCL3-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr5	10019252	10020233	AT5TE36475	.	-	ATCOPIA95	Copia	LTR	981	short	72	medium	1174305	pericentromeric	445	PolIV-and-RDR6-RdDM	DCL3-RdDM	ExpressedAndAnnotated	10019783,10019783,10019783	10019295,10019375,10019555	-,-,-	transcript_id-"ee78afa3-792b-4664-a757-5f1259b470eb|16",transcript_id-"ab310948-aaec-4228-8d13-b11289de31da|8",transcript_id-"a9fc767f-a349-4fd0-a205-b023b55073f0|3"
Chr5	10020251	10020606	AT5TE36480	.	+	HELITRONY1B	Helitron	RC	355	short	414	high	1173932	pericentromeric	72	no-CHH	no-CHH	.	.	.	.	.
Chr5	10023510	10023611	AT5TE36490	.	+	ATLANTYS3	Gypsy	LTR	101	short	142	medium	1170927	pericentromeric	1201	no-CHH	no-CHH	.	.	.	.	.
Chr5	10025640	10025996	AT5TE36495	.	+	ATSINE4	.	SINE	357	short	98	medium	1168542	pericentromeric	257	.	.	.	.	.	.	.
Chr5	10029331	10029493	AT5TE36505	.	+	RathE1_cons	.	RathE1_cons	163	short	213	high	1165045	pericentromeric	999	.	.	.	.	.	.	.
Chr5	10029934	10030075	AT5TE36510	.	+	VANDAL6	MuDR	DNA	141	short	89	medium	1164463	pericentromeric	417	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	10033044	10033676	AT5TE36520	.	-	ATREP5	Helitron	RC	632	short	624	high	1160862	pericentromeric	759	no-CHH	no-CHH	.	.	.	.	.
Chr5	10034385	10034412	AT5TE36525	.	-	ATREP10C	Helitron	RC	27	tiny	123	medium	1160126	pericentromeric	2100	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	10034412	10037202	AT5TE36530	.	-	HELITRONY1C	Helitron	RC	2790	medium	120	medium	1157336	pericentromeric	451	PolIV-RdDM	no-CHH	ExpressedAndAnnotated	10036274	10035440	-	transcript_id-"199f0eff-67e8-464b-b322-65a2ec052660|3"
Chr5	10035243	10035507	AT5TE36535	.	-	HELITRON2	Helitron	RC	264	short	194	medium	1159031	pericentromeric	2146	DCL3-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	10035507	10035533	AT5TE36540	.	+	ATREP10D	Helitron	RC	26	tiny	1295	high	1159005	pericentromeric	2120	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	10036349	10036395	AT5TE36545	.	+	ATREP10D	Helitron	RC	46	tiny	1295	high	1158143	pericentromeric	1258	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr5	10037202	10037458	AT5TE36550	.	+	ATREP10D	Helitron	RC	256	short	1295	high	1157080	pericentromeric	195	no-CHH	no-CHH	.	.	.	.	.
Chr5	10040055	10040164	AT5TE36555	.	+	ATREP3	Helitron	RC	109	short	1439	high	1154374	pericentromeric	1118	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	10041503	10041716	AT5TE36560	.	-	ATREP3	Helitron	RC	213	short	1439	high	1152822	pericentromeric	2492	no-CHH	no-CHH	.	.	.	.	.
Chr5	10041716	10041812	AT5TE36565	.	-	ATREP2A	Helitron	RC	96	tiny	116	medium	1152726	pericentromeric	2396	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	10041812	10042722	AT5TE36570	.	-	ATREP2A	Helitron	RC	910	short	116	medium	1151816	pericentromeric	1486	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10042722	10043721	AT5TE36575	.	+	ATREP11	Helitron	RC	999	short	841	high	1150817	pericentromeric	487	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	10046047	10046224	AT5TE36580	.	-	HELITRONY1E	Helitron	RC	177	short	447	high	1148314	pericentromeric	563	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	10046224	10046894	AT5TE36585	.	-	ATREP10B	Helitron	RC	670	short	491	high	1147644	pericentromeric	740	no-CHH	no-CHH	.	.	.	.	.
Chr5	10047773	10047820	AT5TE36590	.	-	ATREP4	Helitron	RC	47	tiny	832	high	1146718	pericentromeric	2289	no-CHH	no-CHH	.	.	.	.	.
Chr5	10047820	10048005	AT5TE36595	.	-	ATREP3	Helitron	RC	185	short	1439	high	1146533	pericentromeric	2216	no-CHH	no-CHH	.	.	.	.	.
Chr5	10048009	10049183	AT5TE36600	.	+	ATREP11	Helitron	RC	1174	short	841	high	1145355	pericentromeric	1038	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10049183	10049633	AT5TE36605	.	-	ATREP11	Helitron	RC	450	short	841	high	1144905	pericentromeric	588	no-RdDM	no-CHH	.	.	.	.	.
Chr5	10049633	10050104	AT5TE36610	.	+	ATREP3	Helitron	RC	471	short	1439	high	1144434	pericentromeric	117	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	10049871,10050171	10049701,10049950	-,-	transcript_id-"fdd27a7e-166b-41fe-bb84-6ddd5f8f40ed|3",transcript_id-"2a596b5c-3ef8-48fa-a660-b2b7eafeec02|5"
Chr5	10050503	10050546	AT5TE36615	.	+	ATLINE1_6	L1	LINE	43	tiny	129	medium	1143992	pericentromeric	186	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	10050546	10056385	AT5TE36620	.	+	ATLINE1_6	L1	LINE	5839	long	129	medium	1138153	pericentromeric	229	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	10051655	10049952	-	transcript_id-"006d67bc-02e3-4f8d-86fb-ad151b1f64c5|3"
Chr5	10057600	10058186	AT5TE36625	.	+	ATREP4	Helitron	RC	586	short	832	high	1136352	pericentromeric	7283	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	10057669	10058143	AT5TE36630	.	+	HELITRON4	Helitron	RC	474	short	199	medium	1136395	pericentromeric	7352	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	10058345	10058578	AT5TE36635	.	-	LIMPET1	MuDR	DNA	233	short	116	medium	1135960	pericentromeric	8028	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	10059785	10061000	AT5TE36640	.	-	ATENSPM3	En-Spm	DNA	1215	short	98	medium	1133538	pericentromeric	8790	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	10061000	10064751	AT5TE36645	.	-	ATENSPM7	En-Spm	DNA	3751	medium	74	medium	1129787	pericentromeric	5039	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	10064751	10064805	AT5TE36650	.	-	ATENSPM3	En-Spm	DNA	54	tiny	98	medium	1129733	pericentromeric	4985	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr5	10064888	10064952	AT5TE36655	.	+	ATREP15	Helitron	RC	64	tiny	1003	high	1129586	pericentromeric	4838	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	10064952	10064979	AT5TE36660	.	-	ATREP5	Helitron	RC	27	tiny	624	high	1129559	pericentromeric	4811	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10064979	10065422	AT5TE36665	.	-	ATMUN1	MuDR	DNA	443	short	107	medium	1129116	pericentromeric	4368	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10065422	10065456	AT5TE36670	.	-	HELITRONY2	Helitron	RC	34	tiny	198	medium	1129082	pericentromeric	4334	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10065715	10065764	AT5TE36675	.	-	ATREP4	Helitron	RC	49	tiny	832	high	1128774	pericentromeric	4026	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10065764	10067221	AT5TE36680	.	+	ATREP15	Helitron	RC	1457	short	1003	high	1127317	pericentromeric	2569	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	10069077	10069174	AT5TE36685	.	+	HELITRONY1A	Helitron	RC	97	tiny	271	high	1125364	pericentromeric	616	no-CHH	no-CHH	.	.	.	.	.
Chr5	10071865	10071914	AT5TE36690	.	+	ATREP10B	Helitron	RC	49	tiny	491	high	1122624	pericentromeric	1073	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	10071914	10072230	AT5TE36695	.	+	ATREP10D	Helitron	RC	316	short	1295	high	1122308	pericentromeric	1122	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	10072239	10072879	AT5TE36700	.	+	ATREP10C	Helitron	RC	640	short	123	medium	1121659	pericentromeric	1447	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	10072880	10072932	AT5TE36705	.	+	ATREP3	Helitron	RC	53	tiny	1439	high	1121606	pericentromeric	2087	.	.	.	.	.	.	.
Chr5	10073521	10073766	AT5TE36710	.	+	ATHILA7	Gypsy	LTR	245	short	134	medium	1120772	pericentromeric	2729	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	10074631	10074801	AT5TE36715	.	-	HELITRON4	Helitron	RC	170	short	199	medium	1119737	pericentromeric	3839	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	10075975	10081432	AT5TE36720	.	+	ATENSPM2	En-Spm	DNA	5457	long	114	medium	1113106	pericentromeric	1737	no-RdDM	no-RdDM	ExpressedAndAnnotated	10075837,10075837,10075841	10077739,10077785,10077851	+,+,+	transcript_id-"da4061a4-82e8-42e8-8a70-cf4feacf60a8|33",transcript_id-"90e57b59-607a-4fd5-a938-5c918fed7489|8",transcript_id-"2f9e4a2f-5b75-423b-824e-b1fbd8aa75db|8"
Chr5	10076321	10076356	AT5TE36725	.	+	ATREP10B	Helitron	RC	35	tiny	491	high	1118182	pericentromeric	5529	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	10076356	10077517	AT5TE36730	.	+	ATREP3	Helitron	RC	1161	short	1439	high	1117021	pericentromeric	5564	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	10077517	10077631	AT5TE36735	.	+	ATREP6	Helitron	RC	114	short	181	medium	1116907	pericentromeric	5538	RDR6-RdDM	no-CHH	ExpressedAndAnnotated	10075837,10075837,10075841	10077739,10077785,10077851	+,+,+	transcript_id-"da4061a4-82e8-42e8-8a70-cf4feacf60a8|33",transcript_id-"90e57b59-607a-4fd5-a938-5c918fed7489|8",transcript_id-"2f9e4a2f-5b75-423b-824e-b1fbd8aa75db|8"
Chr5	10081432	10081585	AT5TE36745	.	-	ATHATN6	HAT	DNA	153	short	43	low	1112953	pericentromeric	1584	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	10081722	10081893	AT5TE36750	.	-	ATCOPIA13	Copia	LTR	171	short	35	low	1112645	pericentromeric	1276	no-RdDM	no-CHH	.	.	.	.	.
Chr5	10081895	10083076	AT5TE36755	.	-	ATCOPIA70	Copia	LTR	1181	short	8	low	1111462	pericentromeric	93	no-RdDM	no-CHH	.	.	.	.	.
Chr5	10083076	10083126	AT5TE36760	.	-	ATCOPIA91	Copia	LTR	50	tiny	7	low	1111412	pericentromeric	43	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	10085102	10085726	AT5TE36765	.	-	Unassigned	.	Unassigned	624	short	.	low	1108812	pericentromeric	1583	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10085490	10085766	AT5TE36770	.	-	HELITRONY1E	Helitron	RC	276	short	447	high	1108772	pericentromeric	1971	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10085766	10086508	AT5TE36775	.	+	ATREP10D	Helitron	RC	742	short	1295	high	1108030	pericentromeric	2247	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	10086509	10086545	AT5TE36780	.	+	ATHPOGON3	Pogo	DNA	37	tiny	118	medium	1107993	pericentromeric	2989	.	.	.	.	.	.	.
Chr5	10086752	10089599	AT5TE36785	.	+	ATIS112A	Harbinger	DNA	2847	medium	173	medium	1104939	pericentromeric	617	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	10087598	10088749	AT5TE36790	.	+	ATHILA4	Gypsy	LTR	1151	short	250	high	1105789	pericentromeric	1467	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	10092851	10093241	AT5TE36800	.	-	HELITRONY3	Helitron	RC	390	short	1399	high	1101297	pericentromeric	459	no-CHH	no-CHH	.	.	.	.	.
Chr5	10094884	10096910	AT5TE36805	.	-	ATLINE2	L1	LINE	2026	medium	138	medium	1097628	pericentromeric	2492	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	10102583	10102614	AT5TE36820	.	-	ATLANTYS2	Gypsy	LTR	31	tiny	179	medium	1091924	pericentromeric	309	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	10102614	10115706	AT5TE36825	.	-	ATLANTYS2	Gypsy	LTR	13092	long	179	medium	1078832	pericentromeric	340	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	10102858	10102434	-	transcript_id-"580a5b33-cdcc-4de4-aea3-40278c02f343|7"
Chr5	10106819	10114552	AT5TE36830	.	+	ATGP2N	Gypsy	LTR	7733	long	54	medium	1079986	pericentromeric	4545	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	10114552	10114592	AT5TE36835	.	+	ATGP2N	Gypsy	LTR	40	tiny	54	medium	1079946	pericentromeric	12278	no-RdDM	no-CHH	.	.	.	.	.
Chr5	10115711	10115980	AT5TE36840	.	+	ATTIRTA1	Tc1	DNA	269	short	95	medium	1078558	pericentromeric	13437	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	10116037	10116788	AT5TE36845	.	+	ATLINE1_6	L1	LINE	751	short	129	medium	1077750	pericentromeric	13763	no-RdDM	no-CHH	.	.	.	.	.
Chr5	10117045	10117072	AT5TE36850	.	-	ATHATN10	HAT	DNA	27	tiny	48	low	1077466	pericentromeric	14771	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	10117072	10118962	AT5TE36855	.	-	ATHAT10	HAT	DNA	1890	short	35	low	1075576	pericentromeric	14798	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	10118962	10119550	AT5TE36860	.	-	ATREP1	Helitron	RC	588	short	498	high	1074988	pericentromeric	16275	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	10119550	10119597	AT5TE36865	.	+	ATREP4	Helitron	RC	47	tiny	832	high	1074941	pericentromeric	16228	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	10119786	10120086	AT5TE36870	.	+	DT1	Mariner	DNA	300	short	123	medium	1074452	pericentromeric	15739	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	10120194	10121532	AT5TE36875	.	-	ATHAT10	HAT	DNA	1338	short	35	low	1073006	pericentromeric	14293	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	10121540	10121807	AT5TE36880	.	-	ATHATN10	HAT	DNA	267	short	48	low	1072731	pericentromeric	14018	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	10122012	10122122	AT5TE36885	.	+	ATREP3	Helitron	RC	110	short	1439	high	1072416	pericentromeric	13703	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	10122122	10123446	AT5TE36890	.	+	HELITRONY3	Helitron	RC	1324	short	1399	high	1071092	pericentromeric	12379	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	10123446	10123659	AT5TE36895	.	+	HELITRONY3	Helitron	RC	213	short	1399	high	1070879	pericentromeric	12166	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	10123659	10123685	AT5TE36900	.	+	ATREP3	Helitron	RC	26	tiny	1439	high	1070853	pericentromeric	12140	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	10123685	10123708	AT5TE36905	.	+	ATREP4	Helitron	RC	23	tiny	832	high	1070830	pericentromeric	12117	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	10125454	10125622	AT5TE36910	.	-	ATGP8	Gypsy	LTR	168	short	92	medium	1068916	pericentromeric	10203	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10128749	10133862	AT5TE36920	.	+	ATCOPIA12	Copia	LTR	5113	long	15	low	1060676	pericentromeric	1963	no-CHH	no-CHH	.	.	.	.	.
Chr5	10134112	10134734	AT5TE36925	.	-	ATREP3	Helitron	RC	622	short	1439	high	1059804	pericentromeric	1091	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	10134734	10135463	AT5TE36930	.	-	HELITRONY1D	Helitron	RC	729	short	756	high	1059075	pericentromeric	362	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	10139891	10146964	AT5TE36940	.	+	ATENSPM5	En-Spm	DNA	7073	long	111	medium	1047574	pericentromeric	878	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	10142075,10142744,10142745,10144883,10144883	10142308,10143021,10142958,10147814,10147817	+,+,+,+,+	transcript_id-"ac14d260-261f-4c7d-9f2f-9fce033c1064|4",transcript_id-"e7b8df40-7d22-4a60-8e58-ff0899e05085|4",transcript_id-"7a74b4f5-19e7-45f1-aedc-a8d98f9abea6|3",transcript_id-"494dcbae-0d3d-499c-b16e-8908cb1dc9f3|5",transcript_id-"9b9df542-5984-416b-b56f-0f1370d69bbb|10"
Chr5	10146964	10148456	AT5TE36945	.	+	ATENSPM6	En-Spm	DNA	1492	short	151	medium	1046082	pericentromeric	7951	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	10144883,10144883	10147814,10147817	+,+	transcript_id-"494dcbae-0d3d-499c-b16e-8908cb1dc9f3|5",transcript_id-"9b9df542-5984-416b-b56f-0f1370d69bbb|10"
Chr5	10148456	10148787	AT5TE36950	.	+	ATLINE1_3A	L1	LINE	331	short	160	medium	1045751	pericentromeric	9443	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	10151038	10151061	AT5TE36955	.	+	HELITRONY3	Helitron	RC	23	tiny	1399	high	1043477	pericentromeric	11721	no-CHH	no-CHH	.	.	.	.	.
Chr5	10151061	10151094	AT5TE36960	.	+	ATREP1	Helitron	RC	33	tiny	498	high	1043444	pericentromeric	11688	no-CHH	no-CHH	.	.	.	.	.
Chr5	10151094	10151879	AT5TE36965	.	+	HELITRONY3	Helitron	RC	785	short	1399	high	1042659	pericentromeric	10903	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10151879	10161119	AT5TE36970	.	-	HELITRONY3	Helitron	RC	9240	long	1399	high	1033419	pericentromeric	1663	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	10160708,10160708,10160242	10160029,10160208,10160773	-,-,+	transcript_id-"7f8ea204-58b6-430d-8038-e7b630ab9f27|5",transcript_id-"98f8e37e-ebe7-4567-84da-edc81cfcc32b|42",transcript_id-"53f21ffd-2229-4cc5-aae3-3e5afd787d88|4"
Chr5	10152993	10160907	AT5TE36975	.	-	VANDAL5A	MuDR	DNA	7914	long	56	medium	1033631	pericentromeric	1875	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	10160708,10160708,10160242	10160029,10160208,10160773	-,-,+	transcript_id-"7f8ea204-58b6-430d-8038-e7b630ab9f27|5",transcript_id-"98f8e37e-ebe7-4567-84da-edc81cfcc32b|42",transcript_id-"53f21ffd-2229-4cc5-aae3-3e5afd787d88|4"
Chr5	10160907	10161029	AT5TE36980	.	-	ATREP10B	Helitron	RC	122	short	491	high	1033509	pericentromeric	1753	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	10161119	10162507	AT5TE36985	.	+	HELITRONY3	Helitron	RC	1388	short	1399	high	1032031	pericentromeric	275	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	10162507	10162648	AT5TE36990	.	+	HELITRONY3	Helitron	RC	141	short	1399	high	1031890	pericentromeric	134	no-CHH	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	10162648	10162670	AT5TE36995	.	-	HELITRONY1E	Helitron	RC	22	tiny	447	high	1031868	pericentromeric	112	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	10164811	10165234	AT5TE37000	.	+	ATSINE4	.	SINE	423	short	98	medium	1029304	pericentromeric	868	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	10165573	10165731	AT5TE37005	.	-	ATCOPIA71	Copia	LTR	158	short	9	low	1028807	pericentromeric	1630	no-CHH	no-CHH	.	.	.	.	.
Chr5	10166366	10166543	AT5TE37010	.	+	ATREP3	Helitron	RC	177	short	1439	high	1027995	pericentromeric	1306	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	10166543	10166854	AT5TE37015	.	-	HELITRONY1D	Helitron	RC	311	short	756	high	1027684	pericentromeric	995	no-RdDM	no-CHH	.	.	.	.	.
Chr5	10166854	10166885	AT5TE37020	.	+	HELITRONY3	Helitron	RC	31	tiny	1399	high	1027653	pericentromeric	964	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	10166885	10167564	AT5TE37025	.	+	HELITRONY3	Helitron	RC	679	short	1399	high	1026974	pericentromeric	285	no-CHH	no-CHH	.	.	.	.	.
Chr5	10167564	10167601	AT5TE37030	.	+	BRODYAGA2	MuDR	DNA	37	tiny	525	high	1026937	pericentromeric	248	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	10175591	10178950	AT5TE37060	.	+	HELITRONY3A	Helitron	RC	3359	medium	49	low	1015588	pericentromeric	4895	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	10178950	10179180	AT5TE37065	.	+	HELITRONY1C	Helitron	RC	230	short	120	medium	1015358	pericentromeric	8254	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr5	10179426	10179472	AT5TE37070	.	+	VANDAL12	MuDR	DNA	46	tiny	37	low	1015066	pericentromeric	8730	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	10179482	10179983	AT5TE37075	.	+	VANDAL10	MuDR	DNA	501	short	13	low	1014555	pericentromeric	8602	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	10179983	10180009	AT5TE37080	.	+	VANDAL11	MuDR	DNA	26	tiny	18	low	1014529	pericentromeric	8576	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	10180009	10183037	AT5TE37085	.	+	VANDAL12	MuDR	DNA	3028	medium	37	low	1011501	pericentromeric	5548	no-RdDM	no-RdDM	ExpressedAndAnnotated	10183130	10179130	-	transcript_id-"efaf57ac-df40-4d4d-87f1-f7b60d85941c|5"
Chr5	10183037	10183668	AT5TE37090	.	+	ATREP17	MuDR	DNA	631	short	34	low	1010870	pericentromeric	4917	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	10184588	10184790	AT5TE37095	.	+	HELITRON4	Helitron	RC	202	short	199	medium	1009748	pericentromeric	3795	no-CHH	no-CHH	.	.	.	.	.
Chr5	10184888	10184914	AT5TE37100	.	-	ATREP11	Helitron	RC	26	tiny	841	high	1009624	pericentromeric	3671	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	10184914	10185313	AT5TE37105	.	+	ATREP4	Helitron	RC	399	short	832	high	1009225	pericentromeric	3272	no-CHH	no-CHH	.	.	.	.	.
Chr5	10186571	10186820	AT5TE37110	.	-	HELITRONY3	Helitron	RC	249	short	1399	high	1007718	pericentromeric	1765	no-CHH	no-CHH	.	.	.	.	.
Chr5	10186820	10187457	AT5TE37115	.	+	HELITRON4	Helitron	RC	637	short	199	medium	1007081	pericentromeric	1128	no-CHH	no-CHH	.	.	.	.	.
Chr5	10187457	10188287	AT5TE37120	.	+	ATREP3	Helitron	RC	830	short	1439	high	1006251	pericentromeric	298	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10192475	10192589	AT5TE37130	.	-	ATLINE1A	L1	LINE	114	short	289	high	1001949	pericentromeric	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10193163	10193495	AT5TE37135	.	+	VANDAL17	MuDR	DNA	332	short	178	medium	1001043	pericentromeric	109	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	10193495	10194533	AT5TE37140	.	-	HELITRON5	Helitron	RC	1038	short	56	medium	1000005	pericentromeric	441	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	10194533	10194991	AT5TE37145	.	-	ATREP5	Helitron	RC	458	short	624	high	999547	pericentromeric	1479	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10197177	10197209	AT5TE37150	.	-	ARNOLDY1	MuDR	DNA	32	tiny	237	high	997329	pericentromeric	4061	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	10197209	10197289	AT5TE37155	.	-	HELITRONY3	Helitron	RC	80	tiny	1399	high	997249	pericentromeric	3981	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	10197290	10197755	AT5TE37160	.	+	HELITRONY3	Helitron	RC	466	short	1399	high	996783	pericentromeric	3515	.	.	.	.	.	.	.
Chr5	10197755	10199158	AT5TE37165	.	+	ATDNA2T9B	MuDR	DNA	1403	short	26	low	995380	pericentromeric	2112	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10199648	10201217	AT5TE37170	.	+	VANDAL3	MuDR	DNA	1569	short	177	medium	993321	pericentromeric	53	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	10201408	10201573	AT5TE37175	.	+	VANDAL3	MuDR	DNA	165	short	177	medium	992965	pericentromeric	0	no-RdDM	no-CHH	ExpressedAndAnnotated	10205458	10201144	-	transcript_id-"39c237bd-4f80-4fa1-8a85-498567c4d12c|5"
Chr5	10203659	10204189	AT5TE37180	.	+	VANDAL3	MuDR	DNA	530	short	177	medium	990349	pericentromeric	324	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	10205458	10201144	-	transcript_id-"39c237bd-4f80-4fa1-8a85-498567c4d12c|5"
Chr5	10205371	10205453	AT5TE37185	.	+	ARNOLDY2	MuDR	DNA	82	tiny	288	high	989085	pericentromeric	2023	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	10205453	10206374	AT5TE37190	.	-	HELITRONY3	Helitron	RC	921	short	1399	high	988164	pericentromeric	1102	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	10207747	10207780	AT5TE37195	.	-	ATHATN10	HAT	DNA	33	tiny	48	low	986758	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	10207780	10208519	AT5TE37200	.	-	ATHATN10	HAT	DNA	739	short	48	low	986019	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	10208519	10208542	AT5TE37205	.	-	ATHAT10	HAT	DNA	23	tiny	35	low	985996	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	10209525	10209956	AT5TE37210	.	-	ATREP5	Helitron	RC	431	short	624	high	984582	pericentromeric	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	10209956	10212156	AT5TE37215	.	+	ATREP5	Helitron	RC	2200	medium	624	high	982382	pericentromeric	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	10210652,10210653,10210657	10210981,10210901,10210824	+,+,+	transcript_id-"4bb9ee8d-dfdb-4b87-b09d-25853a81b88e|4",transcript_id-"068c9da1-ce03-4753-9861-3799148eb65f|3",transcript_id-"412c536e-670a-4005-927f-6f0a1075ae7c|4"
Chr5	10212156	10212228	AT5TE37220	.	+	ATREP5	Helitron	RC	72	tiny	624	high	982310	pericentromeric	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	10212228	10212270	AT5TE37225	.	+	ATREP5	Helitron	RC	42	tiny	624	high	982268	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	10212744	10213109	AT5TE37230	.	+	ATMUNX1	MuDR	DNA	365	short	155	medium	981429	pericentromeric	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	10215956	10216138	AT5TE37240	.	-	VANDALNX1	MuDR	DNA	182	short	14	low	978400	pericentromeric	2414	no-RdDM	no-CHH	.	.	.	.	.
Chr5	10216187	10216348	AT5TE37245	.	-	VANDAL11	MuDR	DNA	161	short	18	low	978190	pericentromeric	2645	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr5	10216484	10217414	AT5TE37250	.	-	VANDAL9	MuDR	DNA	930	short	43	low	977124	pericentromeric	2942	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	10216788	10217209	AT5TE37255	.	-	VANDALNX1	MuDR	DNA	421	short	14	low	977329	pericentromeric	3246	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	10217414	10217516	AT5TE37260	.	-	VANDAL9	MuDR	DNA	102	short	43	low	977022	pericentromeric	3872	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10217670	10217878	AT5TE37265	.	-	VANDALNX1	MuDR	DNA	208	short	14	low	976660	pericentromeric	4128	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	10218957	10219037	AT5TE37270	.	-	VANDAL14	MuDR	DNA	80	tiny	25	low	975501	pericentromeric	5415	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10219037	10220462	AT5TE37275	.	-	VANDAL12	MuDR	DNA	1425	short	37	low	974076	pericentromeric	5495	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	10223668	10224035	AT5TE37285	.	-	VANDAL10	MuDR	DNA	367	short	13	low	970503	pericentromeric	10126	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	10224035	10229403	AT5TE37290	.	-	VANDAL11	MuDR	DNA	5368	long	18	low	965135	pericentromeric	10493	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	10224693	10224725	AT5TE37295	.	-	VANDAL9	MuDR	DNA	32	tiny	43	low	969813	pericentromeric	11151	no-CHH	no-CHH	.	.	.	.	.
Chr5	10225237	10226332	AT5TE37300	.	-	ATREP11	Helitron	RC	1095	short	841	high	968206	pericentromeric	11695	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10227085	10227230	AT5TE37305	.	-	VANDAL11	MuDR	DNA	145	short	18	low	967308	pericentromeric	13543	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	10229403	10231036	AT5TE37310	.	-	VANDAL9	MuDR	DNA	1633	short	43	low	963502	pericentromeric	15861	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	10230476	10230497	AT5TE37315	.	-	VANDAL9	MuDR	DNA	21	tiny	43	low	964041	pericentromeric	16934	no-CHH	no-CHH	.	.	.	.	.
Chr5	10231036	10231251	AT5TE37320	.	-	VANDAL12	MuDR	DNA	215	short	37	low	963287	pericentromeric	17494	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10231766	10232000	AT5TE37325	.	+	ATREP17	MuDR	DNA	234	short	34	low	962538	pericentromeric	18224	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	10233024	10235039	AT5TE37330	.	+	VANDAL9	MuDR	DNA	2015	medium	43	low	959499	pericentromeric	19482	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10235039	10236481	AT5TE37335	.	+	VANDAL12	MuDR	DNA	1442	short	37	low	958057	pericentromeric	21497	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	10239968	10240187	AT5TE37345	.	-	HELITRONY3A	Helitron	RC	219	short	49	low	954351	pericentromeric	26426	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	10240571	10260922	AT5TE37350	.	+	VANDAL1	MuDR	DNA	20351	long	80	medium	933616	pericentromeric	15320	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	10260666	10257969	-	transcript_id-"f252ce6a-6f50-4919-9d4c-a203aa77ac82|5"
Chr5	10243090	10244901	AT5TE37355	.	+	ATHILA3	Gypsy	LTR	1811	short	243	high	949637	pericentromeric	29548	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	10245283	10253133	AT5TE37360	.	+	ATHILA3	Gypsy	LTR	7851	long	243	high	941405	pericentromeric	23109	.	.	LowExpressed	.	.	.	.
Chr5	10245762	10245784	AT5TE37365	.	-	ATGP2	Gypsy	LTR	23	tiny	48	low	948754	pericentromeric	30458	.	.	.	.	.	.	.
Chr5	10245785	10246371	AT5TE37370	.	-	ATGP2	Gypsy	LTR	587	short	48	low	948167	pericentromeric	29871	.	.	.	.	.	.	.
Chr5	10247695	10248071	AT5TE37375	.	+	VANDAL1	MuDR	DNA	377	short	80	medium	946467	pericentromeric	28171	.	.	.	.	.	.	.
Chr5	10248549	10249164	AT5TE37380	.	-	ATGP2	Gypsy	LTR	616	short	48	low	945374	pericentromeric	27078	.	.	.	.	.	.	.
Chr5	10249177	10249402	AT5TE37385	.	+	ATHILA3	Gypsy	LTR	226	short	243	high	945136	pericentromeric	26840	.	.	.	.	.	.	.
Chr5	10250338	10250487	AT5TE37390	.	+	ATHILA3	Gypsy	LTR	150	short	243	high	944051	pericentromeric	25755	.	.	.	.	.	.	.
Chr5	10250488	10250864	AT5TE37395	.	+	VANDAL1	MuDR	DNA	377	short	80	medium	943674	pericentromeric	25378	.	.	.	.	.	.	.
Chr5	10251348	10251957	AT5TE37400	.	-	ATGP2	Gypsy	LTR	610	short	48	low	942581	pericentromeric	24285	.	.	ExpressedAndAnnotated	10251982	10251525	-	transcript_id-"d16f66bf-84d5-48de-8629-dc0e10a3451e|3"
Chr5	10252466	10252507	AT5TE37405	.	+	ATHILA3	Gypsy	LTR	42	tiny	243	high	942031	pericentromeric	23735	.	.	.	.	.	.	.
Chr5	10253134	10253280	AT5TE37410	.	+	ATHILA3	Gypsy	LTR	147	short	243	high	941258	pericentromeric	22962	.	.	.	.	.	.	.
Chr5	10253281	10253657	AT5TE37415	.	+	VANDAL1	MuDR	DNA	377	short	80	medium	940881	pericentromeric	22585	.	.	.	.	.	.	.
Chr5	10253657	10255324	AT5TE37420	.	+	ATHILA0_I	Gypsy	LTR	1667	short	138	medium	939214	pericentromeric	20918	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	10262682	10262819	AT5TE37450	.	+	ATCOPIA30	Copia	LTR	137	short	33	low	931719	pericentromeric	13423	no-CHH	no-CHH	.	.	.	.	.
Chr5	10265416	10265844	AT5TE37455	.	-	ATENSPM9	En-Spm	DNA	428	short	97	medium	928694	pericentromeric	10398	no-CHH	no-CHH	.	.	.	.	.
Chr5	10266495	10266541	AT5TE37460	.	-	ATENSPM6	En-Spm	DNA	46	tiny	151	medium	927997	pericentromeric	9701	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	10266541	10267394	AT5TE37465	.	-	ATENSPM6	En-Spm	DNA	853	short	151	medium	927144	pericentromeric	8848	no-RdDM	no-CHH	.	.	.	.	.
Chr5	10267394	10267770	AT5TE37470	.	+	BRODYAGA1	MuDR	DNA	376	short	251	high	926768	pericentromeric	8472	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10267969	10268262	AT5TE37475	.	-	ATENSPM9	En-Spm	DNA	293	short	97	medium	926276	pericentromeric	7980	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	10268352	10268585	AT5TE37480	.	-	ATENSPM5	En-Spm	DNA	233	short	111	medium	925953	pericentromeric	7657	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	10268585	10268716	AT5TE37485	.	-	ATREP15	Helitron	RC	131	short	1003	high	925822	pericentromeric	7526	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	10268716	10268980	AT5TE37490	.	-	ATREP6	Helitron	RC	264	short	181	medium	925558	pericentromeric	7262	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	10268980	10271170	AT5TE37495	.	+	ATREP6	Helitron	RC	2190	medium	181	medium	923368	pericentromeric	5072	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	10271170	10271369	AT5TE37500	.	+	HELITRONY3	Helitron	RC	199	short	1399	high	923169	pericentromeric	4873	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	10271369	10271394	AT5TE37505	.	+	ATREP3	Helitron	RC	25	tiny	1439	high	923144	pericentromeric	4848	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	10271394	10272402	AT5TE37510	.	-	HELITRONY3	Helitron	RC	1008	short	1399	high	922136	pericentromeric	3840	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	10272598	10272855	AT5TE37515	.	+	TSCL	.	LINE?	257	short	81	medium	921683	pericentromeric	3387	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	10273932	10273970	AT5TE37520	.	+	ATHATN3A	HAT	DNA	38	tiny	20	low	920568	pericentromeric	2272	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	10273973	10274804	AT5TE37525	.	-	ATHATN10	HAT	DNA	831	short	48	low	919734	pericentromeric	1438	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10274804	10275271	AT5TE37530	.	+	ATHATN3A	HAT	DNA	467	short	20	low	919267	pericentromeric	971	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	10275549	10276049	AT5TE37535	.	+	HELITRON2	Helitron	RC	500	short	194	medium	918489	pericentromeric	193	no-CHH	no-CHH	.	.	.	.	.
Chr5	10276431	10277253	AT5TE37540	.	-	ATREP15	Helitron	RC	822	short	1003	high	917285	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	10282985	10283131	AT5TE37560	.	-	BRODYAGA1A	MuDR	DNA	146	short	586	high	911407	pericentromeric	150	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10283949	10284140	AT5TE37565	.	-	BRODYAGA1A	MuDR	DNA	191	short	586	high	910398	pericentromeric	172	no-RdDM	no-CHH	.	.	.	.	.
Chr5	10286540	10286846	AT5TE37570	.	+	ATHILA8B	Gypsy	LTR	306	short	78	medium	907692	pericentromeric	2763	no-CHH	no-CHH	.	.	.	.	.
Chr5	10287988	10289956	AT5TE37575	.	-	ATREP15	Helitron	RC	1968	short	1003	high	904582	pericentromeric	2832	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10289956	10290054	AT5TE37580	.	-	HELITRONY1B	Helitron	RC	98	tiny	414	high	904484	pericentromeric	2734	no-CHH	no-CHH	.	.	.	.	.
Chr5	10290054	10290141	AT5TE37585	.	-	ATREP4	Helitron	RC	87	tiny	832	high	904397	pericentromeric	2647	no-CHH	no-RdDM	.	.	.	.	.
Chr5	10290531	10290622	AT5TE37590	.	+	VANDAL16	MuDR	DNA	91	tiny	42	low	903916	pericentromeric	2166	PolIV-and-RDR6-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	10291649	10291756	AT5TE37595	.	+	LIMPET1	MuDR	DNA	107	short	116	medium	902782	pericentromeric	1032	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10291930	10292076	AT5TE37600	.	+	VANDAL16	MuDR	DNA	147	short	42	low	902462	pericentromeric	712	.	.	.	.	.	.	.
Chr5	10293589	10293801	AT5TE37605	.	+	VANDAL6	MuDR	DNA	212	short	89	medium	900737	pericentromeric	0	no-CHH	no-RdDM	LowExpressed	.	.	.	.
Chr5	10296175	10297029	AT5TE37610	.	+	ATREP3	Helitron	RC	854	short	1439	high	897509	pericentromeric	1074	no-CHH	no-CHH	.	.	.	.	.
Chr5	10297362	10298148	AT5TE37615	.	-	ATREP3	Helitron	RC	786	short	1439	high	896390	pericentromeric	1968	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	10298148	10298424	AT5TE37620	.	-	ATREP11	Helitron	RC	276	short	841	high	896114	pericentromeric	1692	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	10308655	10309446	AT5TE37660	.	-	ATGP3	Gypsy	LTR	791	short	60	medium	885092	pericentromeric	2513	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	10308742	10308397	-	transcript_id-"5e279a0e-6142-4453-a2d2-290000d1646e|3"
Chr5	10309446	10311540	AT5TE37665	.	-	ATGP7	Gypsy	LTR	2094	medium	47	low	882998	pericentromeric	2577	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	10311541	10311601	AT5TE37670	.	-	ATGP7	Gypsy	LTR	61	tiny	47	low	882937	pericentromeric	2516	.	.	LowExpressed	.	.	.	.
Chr5	10315573	10315639	AT5TE37680	.	-	ATCOPIA57	Copia	LTR	67	tiny	48	low	878899	pericentromeric	0	.	.	.	.	.	.	.
Chr5	10315640	10315905	AT5TE37685	.	-	ATCOPIA57	Copia	LTR	266	short	48	low	878633	pericentromeric	0	.	.	.	.	.	.	.
Chr5	10317187	10319934	AT5TE37690	.	-	ATLANTYS3	Gypsy	LTR	2747	medium	142	medium	874604	pericentromeric	27	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	10319118	10319382	AT5TE37695	.	+	VANDAL6	MuDR	DNA	264	short	89	medium	875156	pericentromeric	918	no-CHH	no-CHH	.	.	.	.	.
Chr5	10330485	10331152	AT5TE37730	.	-	ATLANTYS3	Gypsy	LTR	667	short	142	medium	863386	pericentromeric	1222	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	10335561	10335808	AT5TE37740	.	+	ATLANTYS3	Gypsy	LTR	247	short	142	medium	858730	pericentromeric	1003	no-CHH	no-CHH	.	.	.	.	.
Chr5	10336002	10336283	AT5TE37745	.	-	VANDAL6	MuDR	DNA	281	short	89	medium	858255	pericentromeric	1444	no-CHH	no-CHH	.	.	.	.	.
Chr5	10338073	10338695	AT5TE37750	.	+	ATLANTYS3	Gypsy	LTR	622	short	142	medium	855843	pericentromeric	27	no-RdDM	no-CHH	.	.	.	.	.
Chr5	10339978	10340243	AT5TE37755	.	+	ATCOPIA57	Copia	LTR	266	short	48	low	854295	pericentromeric	0	.	.	.	.	.	.	.
Chr5	10340244	10340310	AT5TE37760	.	+	ATCOPIA57	Copia	LTR	67	tiny	48	low	854228	pericentromeric	0	.	.	.	.	.	.	.
Chr5	10350375	10356320	AT5TE37800	.	-	TA11	L1	LINE	5945	long	157	medium	838218	pericentromeric	2052	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	10357910	10358019	AT5TE37805	.	-	ATCOPIA68	Copia	LTR	109	short	43	low	836519	pericentromeric	353	no-RdDM	no-CHH	.	.	.	.	.
Chr5	10359284	10359344	AT5TE37810	.	-	ATCOPIA92	Copia	LTR	60	tiny	8	low	835194	pericentromeric	0	no-RdDM	no-CHH	.	.	.	.	.
Chr5	10359344	10364262	AT5TE37815	.	-	ATCOPIA92	Copia	LTR	4918	medium	8	low	830276	pericentromeric	0	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	10364262	10364353	AT5TE37820	.	-	ATCOPIA92	Copia	LTR	91	tiny	8	low	830185	pericentromeric	480	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	10365544	10368534	AT5TE37825	.	+	ATLANTYS2	Gypsy	LTR	2990	medium	179	medium	826004	pericentromeric	141	no-RdDM	no-RdDM	ExpressedAndAnnotated	10366709,10367601	10365593,10365602	-,-	transcript_id-"cd57f63e-3914-422d-837a-e8d36e7a5612|3",transcript_id-"4ea4e513-c066-4269-ac86-3e6460de431b|13"
Chr5	10368534	10368557	AT5TE37830	.	+	ATLANTYS2	Gypsy	LTR	23	tiny	179	medium	825981	pericentromeric	118	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	10369465	10369926	AT5TE37835	.	-	ATREP11	Helitron	RC	461	short	841	high	824612	pericentromeric	445	no-CHH	no-CHH	.	.	.	.	.
Chr5	10369926	10369951	AT5TE37840	.	+	ATREP7	Helitron	RC	25	tiny	164	medium	824587	pericentromeric	906	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	10369952	10370078	AT5TE37845	.	+	ATREP7	Helitron	RC	127	short	164	medium	824460	pericentromeric	931	.	.	.	.	.	.	.
Chr5	10370078	10371837	AT5TE37850	.	+	ATREP7	Helitron	RC	1759	short	164	medium	822701	pericentromeric	1058	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10370520	10370999	AT5TE37855	.	-	ATTIR16T3A	.	DNA	479	short	106	medium	823539	pericentromeric	1500	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10371837	10372551	AT5TE37860	.	+	ATREP15	Helitron	RC	714	short	1003	high	821987	pericentromeric	426	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	10372551	10372596	AT5TE37865	.	+	HELITRONY1B	Helitron	RC	45	tiny	414	high	821942	pericentromeric	381	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	10372596	10372756	AT5TE37870	.	+	ATDNAI27T9C	MuDR	DNA	160	short	108	medium	821782	pericentromeric	221	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	10373365	10373461	AT5TE37875	.	-	ATLANTYS3	Gypsy	LTR	96	tiny	142	medium	821077	pericentromeric	0	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	10378699	10379244	AT5TE37885	.	+	ATLANTYS3	Gypsy	LTR	545	short	142	medium	815294	pericentromeric	201	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	10384658	10384742	AT5TE37900	.	+	HELITRONY1D	Helitron	RC	84	tiny	756	high	809796	pericentromeric	4561	no-CHH	no-CHH	.	.	.	.	.
Chr5	10384742	10385217	AT5TE37905	.	+	ATREP11	Helitron	RC	475	short	841	high	809321	pericentromeric	4645	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10385822	10386708	AT5TE37910	.	-	ATHILA4D_LTR	Gypsy	LTR	886	short	106	medium	807830	pericentromeric	5725	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	10389589	10389982	AT5TE37920	.	-	ATREP5	Helitron	RC	393	short	624	high	804556	pericentromeric	7399	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	10389982	10390075	AT5TE37925	.	-	ATREP3	Helitron	RC	93	tiny	1439	high	804463	pericentromeric	7306	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	10390075	10392602	AT5TE37930	.	+	ATREP10D	Helitron	RC	2527	medium	1295	high	801936	pericentromeric	4779	no-RdDM	no-CHH	.	.	.	.	.
Chr5	10392602	10392655	AT5TE37935	.	+	ATREP15	Helitron	RC	53	tiny	1003	high	801883	pericentromeric	4726	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10393611	10394248	AT5TE37940	.	-	HELITRONY3	Helitron	RC	637	short	1399	high	800290	pericentromeric	3133	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10394248	10394823	AT5TE37945	.	+	SIMPLEHAT2	HAT	DNA	575	short	73	medium	799715	pericentromeric	2558	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10394823	10394919	AT5TE37950	.	+	SIMPLEHAT2	HAT	DNA	96	tiny	73	medium	799619	pericentromeric	2462	no-CHH	no-CHH	.	.	.	.	.
Chr5	10396022	10396709	AT5TE37955	.	-	ATREP4	Helitron	RC	687	short	832	high	797829	pericentromeric	672	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	10398713	10398776	AT5TE37960	.	+	ATENSPM5	En-Spm	DNA	63	tiny	111	medium	795762	pericentromeric	1227	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	10398776	10400370	AT5TE37965	.	+	ATENSPM6	En-Spm	DNA	1594	short	151	medium	794168	pericentromeric	1290	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	10397922,10399158	10400174,10400176	+,+	transcript_id-"6e422565-9911-4c8b-920e-05061c14f9d3|3",transcript_id-"00751b17-eb06-4ac0-9181-ad3e7b8f1a89|9"
Chr5	10400370	10400574	AT5TE37970	.	+	ATENSPM9	En-Spm	DNA	204	short	97	medium	793964	pericentromeric	2884	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	10400727	10405872	AT5TE37975	.	-	META1	Copia	LTR	5145	long	138	medium	788666	pericentromeric	3241	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10405994	10406327	AT5TE37980	.	+	ATSINE4	.	SINE	333	short	98	medium	788211	pericentromeric	8508	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	10406706	10409926	AT5TE37985	.	+	ATCOPIA70	Copia	LTR	3220	medium	8	low	784612	pericentromeric	9220	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	10416867	10418488	AT5TE38010	.	-	ATIS112A	Harbinger	DNA	1621	short	173	medium	776050	pericentromeric	11324	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	10418704	10418792	AT5TE38015	.	-	ATCOPIA68	Copia	LTR	88	tiny	43	low	775746	pericentromeric	11020	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	10420237	10420487	AT5TE38020	.	+	ATIS112A	Harbinger	DNA	250	short	173	medium	774051	pericentromeric	9325	PolIV-RdDM	no-CHH	ExpressedAndAnnotated	10418745	10420626	+	transcript_id-"87722b6e-2838-4a9f-8e23-de8c69fc913f|6"
Chr5	10420487	10422407	AT5TE38025	.	+	ATREP10D	Helitron	RC	1920	short	1295	high	772131	pericentromeric	7405	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	10422407	10422478	AT5TE38030	.	+	ATREP10D	Helitron	RC	71	tiny	1295	high	772060	pericentromeric	7334	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	10426427	10426448	AT5TE38040	.	-	ATREP7	Helitron	RC	21	tiny	164	medium	768090	pericentromeric	3364	no-RdDM	no-CHH	.	.	.	.	.
Chr5	10426448	10426589	AT5TE38045	.	-	ATREP7	Helitron	RC	141	short	164	medium	767949	pericentromeric	3223	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	10426960	10427518	AT5TE38050	.	-	BRODYAGA1	MuDR	DNA	558	short	251	high	767020	pericentromeric	2294	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	10428285	10428381	AT5TE38055	.	-	RathE2_cons	.	RathE2_cons	96	tiny	74	medium	766157	pericentromeric	1431	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr5	10432608	10432774	AT5TE38065	.	-	VANDAL1N1	MuDR	DNA	166	short	52	medium	761764	pericentromeric	251	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	10432876	10446801	AT5TE38070	.	-	VANDAL1	MuDR	DNA	13925	long	80	medium	747737	pericentromeric	519	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	10447247	10449491	AT5TE38075	.	-	VANDAL1N1	MuDR	DNA	2244	medium	52	medium	745047	pericentromeric	5049	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10447380	10447920	AT5TE38080	.	-	VANDAL1N1	MuDR	DNA	540	short	52	medium	746618	pericentromeric	6620	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10448025	10448144	AT5TE38085	.	-	VANDAL2N1	MuDR	DNA	119	short	51	medium	746394	pericentromeric	6396	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	10449491	10449750	AT5TE38090	.	+	BRODYAGA1	MuDR	DNA	259	short	251	high	744788	pericentromeric	4790	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	10449773	10449935	AT5TE38095	.	-	VANDAL1N1	MuDR	DNA	162	short	52	medium	744603	pericentromeric	4605	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	10451134	10451357	AT5TE38100	.	-	BRODYAGA2	MuDR	DNA	223	short	525	high	743181	pericentromeric	3183	no-CHH	no-CHH	.	.	.	.	.
Chr5	10451793	10451961	AT5TE38105	.	+	HELITRONY1D	Helitron	RC	168	short	756	high	742577	pericentromeric	2579	no-CHH	no-CHH	.	.	.	.	.
Chr5	10456855	10457470	AT5TE38115	.	+	HELITRONY1A	Helitron	RC	615	short	271	high	737068	pericentromeric	1048	no-CHH	no-CHH	.	.	.	.	.
Chr5	10460785	10461253	AT5TE38125	.	+	ATREP3	Helitron	RC	468	short	1439	high	733285	pericentromeric	4978	no-CHH	no-CHH	.	.	.	.	.
Chr5	10462282	10470135	AT5TE38130	.	+	ATHILA4C	Gypsy	LTR	7853	long	206	high	724403	pericentromeric	6475	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	10465438	10465971	AT5TE38135	.	-	ATHPOGO	Pogo	DNA	533	short	25	low	728567	pericentromeric	9631	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	10471787	10472116	AT5TE38150	.	-	ATGP2	Gypsy	LTR	329	short	48	low	722422	pericentromeric	5693	no-RdDM	no-CHH	ExpressedAndAnnotated	10472448	10471949	-	transcript_id-"2b52856f-0bac-4d19-b9ca-d6ad925b0d4c|4"
Chr5	10472664	10472817	AT5TE38155	.	-	ATGP2N	Gypsy	LTR	153	short	54	medium	721721	pericentromeric	4992	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	10473478	10473592	AT5TE38160	.	-	ARNOLDY2	MuDR	DNA	114	short	288	high	720946	pericentromeric	4217	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	10473592	10474296	AT5TE38165	.	+	ARNOLDY1	MuDR	DNA	704	short	237	high	720242	pericentromeric	3513	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	10474404	10475121	AT5TE38170	.	-	ATREP11	Helitron	RC	717	short	841	high	719417	pericentromeric	2688	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	10475332	10475358	AT5TE38175	.	+	BRODYAGA1A	MuDR	DNA	26	tiny	586	high	719180	pericentromeric	2451	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	10475358	10475449	AT5TE38180	.	+	HELITRONY3	Helitron	RC	91	tiny	1399	high	719089	pericentromeric	2360	PolIV-and-RDR6-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	10475449	10475495	AT5TE38185	.	+	ARNOLDY2	MuDR	DNA	46	tiny	288	high	719043	pericentromeric	2314	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	10475495	10476146	AT5TE38190	.	-	ARNOLDY2	MuDR	DNA	651	short	288	high	718392	pericentromeric	1663	PolIV-and-RDR6-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	10476146	10476190	AT5TE38195	.	-	HELITRONY3	Helitron	RC	44	tiny	1399	high	718348	pericentromeric	1619	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	10479467	10479562	AT5TE38205	.	+	VANDAL16	MuDR	DNA	95	tiny	42	low	714976	pericentromeric	353	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	10479950	10480089	AT5TE38210	.	-	ATDNAI27T9A	MuDR	DNA	139	short	116	medium	714449	pericentromeric	836	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	10480206	10480405	AT5TE38215	.	-	RathE1_cons	.	RathE1_cons	199	short	213	high	714133	pericentromeric	635	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	10487930	10488192	AT5TE38240	.	-	ATHILA4C	Gypsy	LTR	262	short	206	high	706346	pericentromeric	3908	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	10489561	10489639	AT5TE38245	.	+	ATHILA8B	Gypsy	LTR	78	tiny	78	medium	704899	pericentromeric	3470	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	10489850	10490380	AT5TE38250	.	+	ATHILA8A	Gypsy	LTR	530	short	97	medium	704158	pericentromeric	2729	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	10490688	10490744	AT5TE38255	.	+	ATREP10A	Helitron	RC	56	tiny	279	high	703794	pericentromeric	2365	no-CHH	no-CHH	.	.	.	.	.
Chr5	10490762	10491193	AT5TE38260	.	-	ATHATN3	HAT	DNA	431	short	70	medium	703345	pericentromeric	1916	no-CHH	no-CHH	.	.	.	.	.
Chr5	10492008	10492381	AT5TE38265	.	+	ATLINE2	L1	LINE	373	short	138	medium	702157	pericentromeric	728	no-RdDM	no-CHH	.	.	.	.	.
Chr5	10494981	10495297	AT5TE38270	.	+	ATCOPIA30	Copia	LTR	316	short	33	low	699241	pericentromeric	129	no-CHH	no-CHH	.	.	.	.	.
Chr5	10498550	10498656	AT5TE38280	.	+	TA11	L1	LINE	106	short	157	medium	695882	pericentromeric	3698	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	10498656	10501396	AT5TE38285	.	+	TA11	L1	LINE	2740	medium	157	medium	693142	pericentromeric	3804	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	10503260	10503424	AT5TE38290	.	-	ATCOPIA56	Copia	LTR	164	short	16	low	691114	pericentromeric	8408	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	10504866	10505036	AT5TE38295	.	-	ATCOPIA56	Copia	LTR	170	short	16	low	689502	pericentromeric	10014	no-CHH	no-CHH	.	.	.	.	.
Chr5	10505071	10505785	AT5TE38300	.	+	HELITRONY3	Helitron	RC	714	short	1399	high	688753	pericentromeric	10219	no-RdDM	no-CHH	.	.	.	.	.
Chr5	10505785	10505828	AT5TE38305	.	+	HELITRONY3	Helitron	RC	43	tiny	1399	high	688710	pericentromeric	10933	no-CHH	no-CHH	.	.	.	.	.
Chr5	10505828	10505906	AT5TE38310	.	-	ATREP15	Helitron	RC	78	tiny	1003	high	688632	pericentromeric	10976	no-RdDM	no-CHH	.	.	.	.	.
Chr5	10506977	10507470	AT5TE38315	.	-	ATREP12	Helitron	RC	493	short	22	low	687068	pericentromeric	12125	DCL3-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10508204	10508797	AT5TE38320	.	-	ATENSPM7	En-Spm	DNA	593	short	74	medium	685741	pericentromeric	13352	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	10509628,10509628,10509628,10509628,10509628	10507942,10507951,10507951,10507951,10507956	-,-,-,-,-	transcript_id-"a6437a10-0e1a-4d4c-9547-94a5ed0bcadc|3",transcript_id-"a174eacb-5d6c-4206-88be-ca2a7884d7be|18",transcript_id-"d225b4da-b8ec-4e32-819f-b42827f4f2b1|3",transcript_id-"f3a36f5b-cf3a-412f-bd93-b0eac9a61fd9|7",transcript_id-"ef514017-4b7d-4367-8e2f-8232d3162e1a|17"
Chr5	10509632	10509849	AT5TE38325	.	-	ATENSPM7	En-Spm	DNA	217	short	74	medium	684689	pericentromeric	14780	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	10510215	10511057	AT5TE38330	.	-	ATREP12	Helitron	RC	842	short	22	low	683481	pericentromeric	14020	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	10512807	10513498	AT5TE38335	.	+	VANDAL1	MuDR	DNA	691	short	80	medium	681040	pericentromeric	11579	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	10513242	10512805	-	transcript_id-"e92e191d-ee47-4424-ba5a-ac5bf44cf28e|4"
Chr5	10514718	10523407	AT5TE38340	.	-	ATENSPM3	En-Spm	DNA	8689	long	98	medium	671131	pericentromeric	1670	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	10515435	10515538	AT5TE38345	.	-	ATENSPM3	En-Spm	DNA	103	short	98	medium	679000	pericentromeric	9539	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	10515906	10516042	AT5TE38350	.	-	ATENSPM3	En-Spm	DNA	137	short	98	medium	678496	pericentromeric	9035	.	.	LowExpressed	.	.	.	.
Chr5	10516043	10516094	AT5TE38355	.	-	ATENSPM7	En-Spm	DNA	52	tiny	74	medium	678444	pericentromeric	8983	.	.	LowExpressed	.	.	.	.
Chr5	10517341	10517433	AT5TE38360	.	-	ATENSPM3	En-Spm	DNA	93	tiny	98	medium	677105	pericentromeric	7644	.	.	.	.	.	.	.
Chr5	10518493	10518630	AT5TE38365	.	-	ATENSPM10	En-Spm	DNA	137	short	81	medium	675908	pericentromeric	6447	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	10520962	10522148	AT5TE38370	.	-	ATENSPM7	En-Spm	DNA	1186	short	74	medium	672390	pericentromeric	2929	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	10528595	10529239	AT5TE38390	.	-	HELITRONY1D	Helitron	RC	645	short	756	high	665299	pericentromeric	1294	.	.	.	.	.	.	.
Chr5	10529239	10529271	AT5TE38395	.	+	ATREP10C	Helitron	RC	32	tiny	123	medium	665267	pericentromeric	1939	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10529271	10529349	AT5TE38400	.	-	HELITRONY1A	Helitron	RC	78	tiny	271	high	665189	pericentromeric	1971	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10529617	10529673	AT5TE38405	.	-	ATREP3	Helitron	RC	56	tiny	1439	high	664865	pericentromeric	2317	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	10529673	10530880	AT5TE38410	.	-	HELITRONY3	Helitron	RC	1207	short	1399	high	663658	pericentromeric	2373	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10530880	10533401	AT5TE38415	.	-	ARNOLDY1	MuDR	DNA	2521	medium	237	high	661137	pericentromeric	3580	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10533401	10533842	AT5TE38420	.	+	ARNOLDY1	MuDR	DNA	441	short	237	high	660696	pericentromeric	6101	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	10533848	10534055	AT5TE38425	.	+	ARNOLDY2	MuDR	DNA	208	short	288	high	660483	pericentromeric	6547	.	.	.	.	.	.	.
Chr5	10536006	10536032	AT5TE38430	.	-	ATREP9	Helitron	RC	26	tiny	201	high	658506	pericentromeric	4632	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	10536032	10536066	AT5TE38435	.	-	HELITRONY3	Helitron	RC	34	tiny	1399	high	658472	pericentromeric	4598	no-CHH	no-CHH	.	.	.	.	.
Chr5	10536066	10537721	AT5TE38440	.	+	ATREP11	Helitron	RC	1655	short	841	high	656817	pericentromeric	2943	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10537721	10537769	AT5TE38445	.	+	HELITRONY1D	Helitron	RC	48	tiny	756	high	656769	pericentromeric	2895	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10537769	10537894	AT5TE38450	.	+	ATLINE1A	L1	LINE	125	short	289	high	656644	pericentromeric	2770	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	10543583	10543625	AT5TE38470	.	+	ATHATN4	HAT	DNA	42	tiny	56	medium	650913	pericentromeric	309	no-CHH	no-CHH	.	.	.	.	.
Chr5	10543625	10543960	AT5TE38475	.	+	ATHATN4	HAT	DNA	335	short	56	medium	650578	pericentromeric	351	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10545122	10545526	AT5TE38480	.	-	BRODYAGA2	MuDR	DNA	404	short	525	high	649012	pericentromeric	1848	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	10546608	10546972	AT5TE38485	.	-	ATDNA12T3_2	.	DNA	364	short	660	high	647566	pericentromeric	3334	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	10547234	10547746	AT5TE38490	.	-	ATREP5	Helitron	RC	512	short	624	high	646792	pericentromeric	3960	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	10547746	10553606	AT5TE38495	.	-	ATLINE1_6	L1	LINE	5860	long	129	medium	640932	pericentromeric	4115	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	10554286	10554309	AT5TE38500	.	-	ATREP19	.	DNA	23	tiny	189	medium	640229	pericentromeric	3412	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	10554309	10554581	AT5TE38505	.	-	ATDNA2T9C	MuDR	DNA	272	short	242	high	639957	pericentromeric	3140	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	10554581	10555865	AT5TE38510	.	-	ATREP11	Helitron	RC	1284	short	841	high	638673	pericentromeric	1856	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10555865	10555888	AT5TE38515	.	-	ATREP5	Helitron	RC	23	tiny	624	high	638650	pericentromeric	1833	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10555888	10555971	AT5TE38520	.	-	ATREP3	Helitron	RC	83	tiny	1439	high	638567	pericentromeric	1750	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10555971	10556522	AT5TE38525	.	-	ATREP6	Helitron	RC	551	short	181	medium	638016	pericentromeric	1199	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	10561950	10562003	AT5TE38540	.	-	ARNOLDY2	MuDR	DNA	53	tiny	288	high	632535	pericentromeric	2171	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	10562003	10562479	AT5TE38545	.	+	ATLINE1A	L1	LINE	476	short	289	high	632059	pericentromeric	2224	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	10562479	10563384	AT5TE38550	.	-	ATREP10D	Helitron	RC	905	short	1295	high	631154	pericentromeric	2700	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	10563384	10563427	AT5TE38555	.	+	HELITRONY1A	Helitron	RC	43	tiny	271	high	631111	pericentromeric	3418	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10563427	10563559	AT5TE38560	.	+	ATLINE1A	L1	LINE	132	short	289	high	630979	pericentromeric	3286	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10563559	10564011	AT5TE38565	.	+	ATREP4	Helitron	RC	452	short	832	high	630527	pericentromeric	2834	no-RdDM	no-CHH	.	.	.	.	.
Chr5	10564019	10564413	AT5TE38570	.	-	ATHILA4C	Gypsy	LTR	394	short	206	high	630125	pericentromeric	2432	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10564826	10564879	AT5TE38575	.	-	ATREP11	Helitron	RC	53	tiny	841	high	629659	pericentromeric	1966	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	10564879	10565587	AT5TE38580	.	+	ARNOLDY2	MuDR	DNA	708	short	288	high	628951	pericentromeric	1258	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	10565588	10565656	AT5TE38585	.	-	ATREP11	Helitron	RC	69	tiny	841	high	628882	pericentromeric	1189	.	.	.	.	.	.	.
Chr5	10568570	10568820	AT5TE38595	.	+	ATREP1	Helitron	RC	250	short	498	high	625718	pericentromeric	1440	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	10568820	10570452	AT5TE38600	.	-	ATREP15	Helitron	RC	1632	short	1003	high	624086	pericentromeric	1690	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	10570452	10570564	AT5TE38605	.	-	ATREP15	Helitron	RC	112	short	1003	high	623974	pericentromeric	3322	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	10571649	10572260	AT5TE38610	.	+	ATDNA2T9A	MuDR	DNA	612	short	48	low	622278	pericentromeric	4518	.	.	.	.	.	.	.
Chr5	10574236	10578677	AT5TE38615	.	-	ATMU8	MuDR	DNA	4441	medium	9	low	615861	pericentromeric	768	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	10574531,10575527,10578376	10575334,10575313,10575337	+,-,-	transcript_id-"94ac4806-3949-4677-9816-9887dd3901e8|15",transcript_id-"c990b837-7545-4f4a-aba6-b57ccdf8b0bb|7",transcript_id-"6b4f273f-f93a-4ed5-a698-aca1ab65437d|3"
Chr5	10581546	10582595	AT5TE38625	.	+	ATHILA6A	Gypsy	LTR	1049	short	247	high	611943	pericentromeric	0	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	10581805	10581292	-	transcript_id-"db474e31-4f73-42b4-8f59-428b52084c30|6"
Chr5	10582595	10582665	AT5TE38630	.	+	ATHILA4	Gypsy	LTR	70	tiny	250	high	611873	pericentromeric	1036	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	10582665	10586640	AT5TE38635	.	+	ATHILA4	Gypsy	LTR	3975	medium	250	high	607898	pericentromeric	1106	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr5	10586818	10587541	AT5TE38640	.	+	ATHILA4A	Gypsy	LTR	723	short	310	high	606997	pericentromeric	5259	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	10587541	10588998	AT5TE38645	.	+	ATHILA4B_LTR	Gypsy	LTR	1457	short	143	medium	605540	pericentromeric	5982	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	10587931	10588323	+	transcript_id-"4b967264-a82b-425b-9011-b7e422851987|5"
Chr5	10588998	10596453	AT5TE38650	.	+	ATHILA6A	Gypsy	LTR	7455	long	247	high	598085	pericentromeric	7439	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr5	10592123	10592471	AT5TE38655	.	+	ATHILA6A	Gypsy	LTR	348	short	247	high	602067	pericentromeric	10564	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	10596614	10596795	AT5TE38665	.	+	ATREP17	MuDR	DNA	181	short	34	low	597743	pericentromeric	14180	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	10596914	10597152	AT5TE38670	.	-	ATREP17	MuDR	DNA	238	short	34	low	597386	pericentromeric	13823	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	10597328	10608553	AT5TE38675	.	-	VANDAL9	MuDR	DNA	11225	long	43	low	585985	pericentromeric	2422	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	10608609	10608883	AT5TE38680	.	-	VANDAL16	MuDR	DNA	274	short	42	low	585655	pericentromeric	2092	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	10613714	10613782	AT5TE38690	.	+	ATREP15	Helitron	RC	68	tiny	1003	high	580756	pericentromeric	710	no-CHH	no-CHH	.	.	.	.	.
Chr5	10616649	10617350	AT5TE38700	.	+	ATLINE1_5	L1	LINE	701	short	91	medium	577188	pericentromeric	3645	no-CHH	no-CHH	ExpressedAndAnnotated	10615238	10617684	+	transcript_id-"9073f3e1-db1f-4b16-b06a-39c8b0acf3fa|3"
Chr5	10617481	10617793	AT5TE38705	.	+	ATLINE1A	L1	LINE	312	short	289	high	576745	pericentromeric	4477	no-CHH	no-CHH	ExpressedAndAnnotated	10615238	10617684	+	transcript_id-"9073f3e1-db1f-4b16-b06a-39c8b0acf3fa|3"
Chr5	10617793	10630018	AT5TE38710	.	-	ATHILA7	Gypsy	LTR	12225	long	134	medium	564520	pericentromeric	4789	no-RdDM	no-RdDM	ExpressedAndAnnotated	10618678	10617790	-	transcript_id-"11770fe4-dcb2-4fe5-be51-4b0e62577ff5|4"
Chr5	10630920	10631176	AT5TE38715	.	+	ATCOPIA95	Copia	LTR	256	short	72	medium	563362	pericentromeric	5513	no-RdDM	no-CHH	.	.	.	.	.
Chr5	10632240	10633944	AT5TE38720	.	+	SADHU	.	Unassigned	1704	short	16	low	560594	pericentromeric	2745	PolIV-and-RDR6-RdDM	DCL3-RdDM	ExpressedAndAnnotated	10632260,10633320	10633471,10633944	+,+	transcript_id-"c323c2ab-e65a-41b3-acbd-fe6d19bbb28e|9",transcript_id-"e12aa2a4-0acb-41fb-b468-7a70833029b1|3"
Chr5	10632793	10633563	AT5TE38725	.	+	ATLANTYS2	Gypsy	LTR	770	short	179	medium	560975	pericentromeric	3126	PolIV-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr5	10633967	10635312	AT5TE38730	.	+	ATLINE1A	L1	LINE	1345	short	289	high	559226	pericentromeric	1377	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	10636892	10637096	AT5TE38735	.	-	ATENSPM6	En-Spm	DNA	204	short	151	medium	557442	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	10637660	10637817	AT5TE38740	.	-	ATDNA12T3_2	.	DNA	157	short	660	high	556721	pericentromeric	524	no-CHH	no-CHH	.	.	.	.	.
Chr5	10638496	10643362	AT5TE38745	.	+	ATCOPIA13	Copia	LTR	4866	medium	35	low	551176	pericentromeric	1360	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	10643459	10643877	AT5TE38750	.	-	ATCOPIA44	Copia	LTR	418	short	12	low	550661	pericentromeric	3953	no-CHH	no-CHH	.	.	.	.	.
Chr5	10643900	10644088	AT5TE38755	.	-	ATDNA12T3_2	.	DNA	188	short	660	high	550450	pericentromeric	3742	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	10644140	10646846	AT5TE38760	.	-	VANDAL2N1	MuDR	DNA	2706	medium	51	medium	547692	pericentromeric	984	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	10650230	10650637	AT5TE38770	.	-	BRODYAGA1A	MuDR	DNA	407	short	586	high	543901	pericentromeric	610	no-CHH	no-CHH	.	.	.	.	.
Chr5	10653728	10653929	AT5TE38780	.	+	ATDNA12T3_2	.	DNA	201	short	660	high	540609	pericentromeric	662	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10655145	10655287	AT5TE38785	.	-	VANDAL16	MuDR	DNA	142	short	42	low	539251	pericentromeric	404	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	10656133	10656372	AT5TE38790	.	+	ATREP5	Helitron	RC	239	short	624	high	538166	pericentromeric	1392	no-CHH	no-CHH	.	.	.	.	.
Chr5	10656372	10657693	AT5TE38795	.	+	ATREP10D	Helitron	RC	1321	short	1295	high	536845	pericentromeric	1631	no-CHH	no-CHH	.	.	.	.	.
Chr5	10660100	10660934	AT5TE38800	.	-	ATREP10D	Helitron	RC	834	short	1295	high	533604	pericentromeric	5359	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10660935	10660999	AT5TE38805	.	+	ATN9_1	MuDR	DNA	65	tiny	65	medium	533539	pericentromeric	6193	.	.	.	.	.	.	.
Chr5	10661302	10663719	AT5TE38810	.	-	ATLINE1_4	L1	LINE	2417	medium	102	medium	530819	pericentromeric	6561	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	10663719	10665863	AT5TE38815	.	-	ATHILA4A	Gypsy	LTR	2144	medium	310	high	528675	pericentromeric	8978	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	10665867	10670275	AT5TE38820	.	-	ATLINE1_4	L1	LINE	4408	medium	102	medium	524263	pericentromeric	4916	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	10666709	10666789	AT5TE38825	.	+	ATHATN9	HAT	DNA	80	tiny	12	low	527749	pericentromeric	8402	no-RdDM	no-CHH	.	.	.	.	.
Chr5	10667425	10669675	AT5TE38830	.	-	ATLINE1_5	L1	LINE	2250	medium	91	medium	524863	pericentromeric	5516	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	10670837	10672133	AT5TE38835	.	+	Unassigned	.	Unassigned	1296	short	.	low	522405	pericentromeric	3058	no-RdDM	no-CHH	.	.	.	.	.
Chr5	10672976	10673191	AT5TE38840	.	+	BRODYAGA1A	MuDR	DNA	215	short	586	high	521347	pericentromeric	2000	no-CHH	no-CHH	.	.	.	.	.
Chr5	10673353	10673606	AT5TE38845	.	+	ATHILA7	Gypsy	LTR	253	short	134	medium	520932	pericentromeric	1585	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10676940	10676975	AT5TE38855	.	+	ATCOPIA54	Copia	LTR	35	tiny	18	low	517563	pericentromeric	789	no-CHH	no-CHH	.	.	.	.	.
Chr5	10676975	10677430	AT5TE38860	.	+	ATCOPIA64	Copia	LTR	455	short	13	low	517108	pericentromeric	359	no-CHH	no-CHH	.	.	.	.	.
Chr5	10679233	10679298	AT5TE38865	.	-	HELITRONY1D	Helitron	RC	65	tiny	756	high	515240	pericentromeric	288	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	10679298	10679366	AT5TE38870	.	-	HELITRONY1A	Helitron	RC	68	tiny	271	high	515172	pericentromeric	353	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	10679366	10682503	AT5TE38875	.	+	HELITRONY3	Helitron	RC	3137	medium	1399	high	512035	pericentromeric	421	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10682503	10682583	AT5TE38880	.	-	HELITRONY2	Helitron	RC	80	tiny	198	medium	511955	pericentromeric	634	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10682597	10684407	AT5TE38885	.	-	TNAT1A	.	DNA	1810	short	162	medium	510131	pericentromeric	0	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	10682913	10683150	AT5TE38890	.	-	ATMU6N1	MuDR	DNA	237	short	39	low	511388	pericentromeric	67	DCL3-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10683839	10684156	AT5TE38895	.	+	ATMU6	MuDR	DNA	317	short	26	low	510382	pericentromeric	0	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10684407	10684759	AT5TE38900	.	-	ATSINE4	.	SINE	352	short	98	medium	509779	pericentromeric	481	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	10686185	10686838	AT5TE38905	.	+	TA11	L1	LINE	653	short	157	medium	507700	pericentromeric	2259	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr5	10686838	10686862	AT5TE38910	.	+	TA11	L1	LINE	24	tiny	157	medium	507676	pericentromeric	2912	DCL3-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	10687013	10687360	AT5TE38915	.	-	ATREP1	Helitron	RC	347	short	498	high	507178	pericentromeric	3087	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	10687494	10687933	AT5TE38920	.	-	HARBINGER	Harbinger	DNA	439	short	90	medium	506605	pericentromeric	3568	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10688188	10689431	AT5TE38925	.	-	HELITRONY1A	Helitron	RC	1243	short	271	high	505107	pericentromeric	4262	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10689431	10689583	AT5TE38930	.	+	META1	Copia	LTR	152	short	138	medium	504955	pericentromeric	5505	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	10690985	10695185	AT5TE38935	.	-	HELITRON2	Helitron	RC	4200	medium	194	medium	499353	pericentromeric	7059	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	10695202	10696144	AT5TE38940	.	+	ATGP1	Gypsy	LTR	942	short	144	medium	498394	pericentromeric	11276	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	10696149	10700179	AT5TE38945	.	-	HELITRONY2	Helitron	RC	4030	medium	198	medium	494359	pericentromeric	12223	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	10700179	10700383	AT5TE38950	.	-	HELITRONY2	Helitron	RC	204	short	198	medium	494155	pericentromeric	16253	no-RdDM	no-CHH	.	.	.	.	.
Chr5	10700384	10701826	AT5TE38955	.	+	Unassigned	.	Unassigned	1442	short	.	low	492712	pericentromeric	16458	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10700652	10701368	AT5TE38960	.	+	HARBINGER	Harbinger	DNA	716	short	90	medium	493170	pericentromeric	16726	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10701898	10702361	AT5TE38965	.	-	HELITRONY3	Helitron	RC	463	short	1399	high	492177	pericentromeric	17075	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	10702373	10702603	AT5TE38970	.	-	HARBINGER	Harbinger	DNA	230	short	90	medium	491935	pericentromeric	16833	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	10702603	10702947	AT5TE38975	.	-	HELITRONY3	Helitron	RC	344	short	1399	high	491591	pericentromeric	16489	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	10702947	10704071	AT5TE38980	.	+	ATREP10D	Helitron	RC	1124	short	1295	high	490467	pericentromeric	15365	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10705844	10705881	AT5TE38985	.	-	ATHATN10	HAT	DNA	37	tiny	48	low	488657	pericentromeric	13555	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	10705881	10714288	AT5TE38990	.	-	ATHAT10	HAT	DNA	8407	long	35	low	480250	pericentromeric	5148	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	10708156	10713296	AT5TE38995	.	+	ATCOPIA68	Copia	LTR	5140	long	43	low	481242	pericentromeric	6140	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	10714288	10714379	AT5TE39000	.	-	ATHAT10	HAT	DNA	91	tiny	35	low	480159	pericentromeric	5057	no-CHH	no-CHH	.	.	.	.	.
Chr5	10714379	10714654	AT5TE39005	.	-	ATREP3	Helitron	RC	275	short	1439	high	479884	pericentromeric	4782	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	10714654	10715749	AT5TE39010	.	+	ATREP15	Helitron	RC	1095	short	1003	high	478789	pericentromeric	3687	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10715749	10715846	AT5TE39015	.	+	ATREP15	Helitron	RC	97	tiny	1003	high	478692	pericentromeric	3590	no-CHH	no-CHH	.	.	.	.	.
Chr5	10715846	10719202	AT5TE39020	.	+	ATREP15	Helitron	RC	3356	medium	1003	high	475336	pericentromeric	234	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10719202	10719299	AT5TE39025	.	-	ATREP4	Helitron	RC	97	tiny	832	high	475239	pericentromeric	137	no-CHH	no-CHH	.	.	.	.	.
Chr5	10724492	10725611	AT5TE39035	.	+	ATHILA4D_LTR	Gypsy	LTR	1119	short	106	medium	468927	pericentromeric	790	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr5	10725611	10725636	AT5TE39040	.	-	ATHILA4A	Gypsy	LTR	25	tiny	310	high	468902	pericentromeric	1909	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	10725636	10728091	AT5TE39045	.	-	ATHILA4A	Gypsy	LTR	2455	medium	310	high	466447	pericentromeric	1934	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	10727484,10726593,10726593,10726593,10726593	10726363,10727213,10727375,10727723,10727729	-,+,+,+,+	transcript_id-"929fc306-878b-472f-aae7-bac7a1c6080c|11",transcript_id-"21bf3318-43ee-4890-a713-b8dbbe92d3dc|5",transcript_id-"e0732ba7-b531-4a8e-a4a6-2ee08f3caf2c|6",transcript_id-"e379e528-ba19-412b-a7cd-d06c600b2606|4",transcript_id-"773ef311-c402-42ff-8976-0b08e8490c53|24"
Chr5	10728091	10730056	AT5TE39050	.	-	ATHILA4	Gypsy	LTR	1965	short	250	high	464482	pericentromeric	4389	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	10729362	10727649	-	transcript_id-"544180bd-ac42-4537-8034-e1d5ab4a0d87|8"
Chr5	10730323	10730417	AT5TE39055	.	-	ATHILA6B	Gypsy	LTR	94	tiny	134	medium	464121	pericentromeric	6621	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr5	10730417	10731974	AT5TE39060	.	-	ATHILA6A	Gypsy	LTR	1557	short	247	high	462564	pericentromeric	6715	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	10731974	10731999	AT5TE39065	.	-	ATHILA6A	Gypsy	LTR	25	tiny	247	high	462539	pericentromeric	8272	RDR6-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	10732509	10732613	AT5TE39070	.	-	META1	Copia	LTR	104	short	138	medium	461925	pericentromeric	8807	no-RdDM	no-CHH	.	.	.	.	.
Chr5	10732805	10733362	AT5TE39075	.	-	ATHILA4	Gypsy	LTR	557	short	250	high	461176	pericentromeric	9103	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	10733551	10737020	AT5TE39080	.	+	ATHILA4A	Gypsy	LTR	3469	medium	310	high	457518	pericentromeric	9849	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	10737020	10738756	AT5TE39085	.	-	ATHILA3	Gypsy	LTR	1736	short	243	high	455782	pericentromeric	13318	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr5	10738785	10740791	AT5TE39090	.	-	ATHILA5	Gypsy	LTR	2006	medium	131	medium	453747	pericentromeric	15083	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	10740791	10741015	AT5TE39095	.	-	ATHILA0_I	Gypsy	LTR	224	short	138	medium	453523	pericentromeric	17089	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	10741015	10742725	AT5TE39100	.	-	ATHILA3	Gypsy	LTR	1710	short	243	high	451813	pericentromeric	17313	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	10742731	10746122	AT5TE39105	.	-	ATHILA3	Gypsy	LTR	3391	medium	243	high	448416	pericentromeric	19029	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	10746655	10747272	AT5TE39110	.	+	ATGP8	Gypsy	LTR	617	short	92	medium	447266	pericentromeric	22953	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10750147	10750379	AT5TE39120	.	+	VANDAL3	MuDR	DNA	232	short	177	medium	444159	pericentromeric	25751	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	10750991	10751907	AT5TE39125	.	+	ARNOLD4	MuDR	DNA	916	short	23	low	442631	pericentromeric	24223	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	10754881	10755451	AT5TE39135	.	+	HELITRONY1D	Helitron	RC	570	short	756	high	439087	pericentromeric	20679	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10755540	10760142	AT5TE39140	.	-	ATIS112A	Harbinger	DNA	4602	medium	173	medium	434396	pericentromeric	15988	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	10759912,10757473,10759912	10757293,10757341,10757849	-,-,-	transcript_id-"b7bc00d6-c0f0-46cd-845a-68c7c2daf533|30",transcript_id-"4f83a669-3037-427b-b218-c8e92f0f1702|4",transcript_id-"fd024336-58a3-4c40-bee9-826b8d2e2803|4"
Chr5	10760266	10760837	AT5TE39145	.	-	ATREP6	Helitron	RC	571	short	181	medium	433701	pericentromeric	15293	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10760837	10760893	AT5TE39150	.	-	HELITRONY1D	Helitron	RC	56	tiny	756	high	433645	pericentromeric	15237	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10761017	10761775	AT5TE39155	.	-	HARBINGER	Harbinger	DNA	758	short	90	medium	432763	pericentromeric	14355	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	10762739	10763178	AT5TE39160	.	-	META1	Copia	LTR	439	short	138	medium	431360	pericentromeric	12952	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10763179	10764242	AT5TE39165	.	+	ATCOPIA30	Copia	LTR	1063	short	33	low	430296	pericentromeric	11888	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10764242	10772503	AT5TE39170	.	+	ATGP1	Gypsy	LTR	8261	long	144	medium	422035	pericentromeric	3627	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	10773176	10773212	AT5TE39175	.	-	ATDNA2T9C	MuDR	DNA	36	tiny	242	high	421326	pericentromeric	2918	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	10773212	10774315	AT5TE39180	.	-	ATREP10D	Helitron	RC	1103	short	1295	high	420223	pericentromeric	1815	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10774315	10774441	AT5TE39185	.	+	HELITRONY1D	Helitron	RC	126	short	756	high	420097	pericentromeric	1689	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10774506	10774644	AT5TE39190	.	-	HELITRON1	Helitron	RC	138	short	130	medium	419894	pericentromeric	1486	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	10774730	10774954	AT5TE39195	.	+	ATENSPM5	En-Spm	DNA	224	short	111	medium	419584	pericentromeric	1176	no-CHH	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	10775091	10774609	-	transcript_id-"30cd716c-e2aa-45f8-a77b-703f8da7092c|3"
Chr5	10775172	10775346	AT5TE39200	.	-	HELITRON1	Helitron	RC	174	short	130	medium	419192	pericentromeric	784	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	10775470	10776040	AT5TE39205	.	-	HELITRONY1C	Helitron	RC	570	short	120	medium	418498	pericentromeric	90	no-RdDM	no-CHH	.	.	.	.	.
Chr5	10776812	10778565	AT5TE39210	.	-	ATHILA3	Gypsy	LTR	1753	short	243	high	415973	pericentromeric	0	no-RdDM	no-RdDM	ExpressedAndAnnotated	10777937	10776613	-	transcript_id-"ed0450f1-ad05-4016-a33e-065a50992477|6"
Chr5	10779450	10780060	AT5TE39215	.	+	HARBINGER	Harbinger	DNA	610	short	90	medium	414478	pericentromeric	0	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	10785802	10790577	AT5TE39230	.	-	VANDAL8	MuDR	DNA	4775	medium	123	medium	403961	pericentromeric	125	no-RdDM	no-RdDM	ExpressedAndAnnotated	10790087	10789168	-	transcript_id-"6364c68b-1e2e-440d-91d5-3c9a65336a03|10"
Chr5	10789086	10789136	AT5TE39235	.	-	VANDAL8	MuDR	DNA	50	tiny	123	medium	405402	pericentromeric	3409	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	10790583	10790924	AT5TE39240	.	-	VANDAL8	MuDR	DNA	341	short	123	medium	403614	pericentromeric	4906	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	10790924	10794418	AT5TE39245	.	-	VANDAL8	MuDR	DNA	3494	medium	123	medium	400120	pericentromeric	2229	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	10796014	10796304	AT5TE39250	.	+	BRODYAGA1A	MuDR	DNA	290	short	586	high	398234	pericentromeric	343	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	10800931	10801073	AT5TE39260	.	+	TAG2	HAT	DNA	142	short	86	medium	393465	pericentromeric	2784	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10801701	10801897	AT5TE39265	.	+	TAG2	HAT	DNA	196	short	86	medium	392641	pericentromeric	3554	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	10801992	10802071	AT5TE39270	.	-	ATLINE1_6	L1	LINE	79	tiny	129	medium	392467	pericentromeric	3845	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	10802071	10802878	AT5TE39275	.	-	ATLINE1_6	L1	LINE	807	short	129	medium	391660	pericentromeric	3924	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	10802942	10801991	-	transcript_id-"9e19f5e2-db93-4461-b717-e2f1ddce24e6|3"
Chr5	10803061	10804417	AT5TE39280	.	-	HELITRONY1B	Helitron	RC	1356	short	414	high	390121	pericentromeric	4914	no-CHH	no-CHH	ExpressedAndAnnotated	10802972	10803147	+	transcript_id-"43b7bce7-a171-4514-a0f3-126e9cc28ff4|6"
Chr5	10806016	10806528	AT5TE39285	.	-	ATREP9	Helitron	RC	512	short	201	high	388010	pericentromeric	6378	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	10807370	10807523	AT5TE39290	.	-	RathE1_cons	.	RathE1_cons	153	short	213	high	387015	pericentromeric	5383	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10808358	10812728	AT5TE39295	.	+	ATCOPIA45	Copia	LTR	4370	medium	20	low	381810	pericentromeric	178	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	10812728	10812999	AT5TE39300	.	+	ATCOPIA97	Copia	LTR	271	short	10	low	381539	pericentromeric	0	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	10812999	10813427	AT5TE39305	.	-	HELITRON2	Helitron	RC	428	short	194	medium	381111	pericentromeric	0	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	10816630	10820541	AT5TE39315	.	+	ATENSPM2	En-Spm	DNA	3911	medium	114	medium	373997	pericentromeric	1806	no-RdDM	no-RdDM	ExpressedAndAnnotated	10817121,10817121,10817123,10817123,10817123,10817123,10817341,10817412,10819037,10819037,10819037,10819039	10817397,10818002,10817466,10818045,10818584,10818615,10817570,10817568,10819440,10819528,10820051,10819361	+,+,+,+,+,+,+,+,+,+,+,+	transcript_id-"c22c8b4f-6815-4172-9bb6-1b887ba40cb9|111",transcript_id-"e8bee9bc-af8e-48d3-9163-511ee0e4b034|7",transcript_id-"a8f9a106-cd87-431b-954a-bf382bb632fd|176",transcript_id-"044e53d3-be5e-47af-b42b-6d379fb4446b|6",transcript_id-"8c3798b0-d431-47c2-996e-068af2f284da|6",transcript_id-"9a87d8fe-b4f9-4429-82fb-ac37b6548362|150",transcript_id-"efd6cc4f-2d00-4872-b698-7967c2b0c626|3",transcript_id-"62b01ddd-d2ed-424b-9a6a-0c038e8ebbf4|9",transcript_id-"90b5c8d4-8ef3-4b21-b162-274b0602b066|4",transcript_id-"d671c8c2-4f0d-462e-b6e5-466240493af4|31",transcript_id-"62e7f743-ddcc-4eab-bd07-f9e3de724496|8",transcript_id-"84762d3e-d8ed-478c-bda7-027dd391d8ac|22"
Chr5	10817308	10817583	AT5TE39320	.	+	ATENSPM2	En-Spm	DNA	275	short	114	medium	376955	pericentromeric	2484	no-RdDM	no-RdDM	ExpressedAndAnnotated	10817341,10817412	10817570,10817568	+,+	transcript_id-"efd6cc4f-2d00-4872-b698-7967c2b0c626|3",transcript_id-"62b01ddd-d2ed-424b-9a6a-0c038e8ebbf4|9"
Chr5	10818928	10820246	AT5TE39325	.	+	ATENSPM2	En-Spm	DNA	1318	short	114	medium	374292	pericentromeric	2633	no-RdDM	no-RdDM	ExpressedAndAnnotated	10819037,10819037,10819037,10819039	10819440,10819528,10820051,10819361	+,+,+,+	transcript_id-"90b5c8d4-8ef3-4b21-b162-274b0602b066|4",transcript_id-"d671c8c2-4f0d-462e-b6e5-466240493af4|31",transcript_id-"62e7f743-ddcc-4eab-bd07-f9e3de724496|8",transcript_id-"84762d3e-d8ed-478c-bda7-027dd391d8ac|22"
Chr5	10820544	10821723	AT5TE39330	.	-	ATREP10D	Helitron	RC	1179	short	1295	high	372815	pericentromeric	1156	no-CHH	no-RdDM	.	.	.	.	.
Chr5	10822864	10823065	AT5TE39335	.	+	VANDAL1	MuDR	DNA	201	short	80	medium	371473	pericentromeric	0	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10823073	10823271	AT5TE39340	.	-	ATDNA2T9C	MuDR	DNA	198	short	242	high	371267	pericentromeric	0	no-RdDM	no-CHH	.	.	.	.	.
Chr5	10824559	10825088	AT5TE39345	.	-	VANDAL3	MuDR	DNA	529	short	177	medium	369450	pericentromeric	0	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	10826584	10827796	AT5TE39350	.	-	ATDNA2T9B	MuDR	DNA	1212	short	26	low	366742	pericentromeric	9	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	10827796	10827901	AT5TE39355	.	-	ATDNA2T9A	MuDR	DNA	105	short	48	low	366637	pericentromeric	1221	no-CHH	no-RdDM	.	.	.	.	.
Chr5	10828192	10828515	AT5TE39360	.	+	VANDAL5	MuDR	DNA	323	short	85	medium	366023	pericentromeric	1617	no-RdDM	no-CHH	.	.	.	.	.
Chr5	10828538	10830064	AT5TE39365	.	-	ATREP3	Helitron	RC	1526	short	1439	high	364474	pericentromeric	1734	no-RdDM	no-CHH	.	.	.	.	.
Chr5	10835642	10835800	AT5TE39380	.	-	HELITRON1	Helitron	RC	158	short	130	medium	358738	pericentromeric	2048	no-CHH	no-CHH	.	.	.	.	.
Chr5	10836440	10837307	AT5TE39385	.	-	ATREP3	Helitron	RC	867	short	1439	high	357231	pericentromeric	541	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	10837307	10837713	AT5TE39390	.	+	BRODYAGA1	MuDR	DNA	406	short	251	high	356825	pericentromeric	135	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	10837713	10837841	AT5TE39395	.	+	ATREP3	Helitron	RC	128	short	1439	high	356697	pericentromeric	7	no-CHH	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	10839922	10840528	AT5TE39400	.	-	BRODYAGA1	MuDR	DNA	606	short	251	high	354010	pericentromeric	96	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	10839932	10840506	AT5TE39405	.	+	BRODYAGA1	MuDR	DNA	574	short	251	high	354032	pericentromeric	106	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	10841145	10841315	AT5TE39410	.	+	SIMPLEHAT1	HAT	DNA	170	short	56	medium	353223	pericentromeric	1319	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	10841508	10841868	AT5TE39415	.	-	HARBINGER	Harbinger	DNA	360	short	90	medium	352670	pericentromeric	1682	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	10844358	10845713	AT5TE39420	.	+	ARNOLD3	MuDR	DNA	1355	short	45	low	348825	pericentromeric	4532	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	10844606,10844606	10844855,10844897	+,+	transcript_id-"51ee2736-e3b2-42bf-b595-a83fa26fccf6|3",transcript_id-"240fa7c9-9fc5-4f3a-8e5d-53deff052b86|4"
Chr5	10846169	10853863	AT5TE39425	.	+	ATENSPM11	En-Spm	DNA	7694	long	47	low	340675	pericentromeric	2937	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	10852708	10853524	+	transcript_id-"a33560af-82e7-43c4-be85-11d46a50ff37|11"
Chr5	10853864	10853909	AT5TE39430	.	+	ATENSPM10	En-Spm	DNA	45	tiny	81	medium	340629	pericentromeric	2891	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	10854010	10854306	AT5TE39435	.	-	TNAT1A	.	DNA	296	short	162	medium	340232	pericentromeric	2494	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	10854306	10856661	AT5TE39440	.	+	HELITRONY3	Helitron	RC	2355	medium	1399	high	337877	pericentromeric	139	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10856661	10856754	AT5TE39445	.	+	ARNOLDY2	MuDR	DNA	93	tiny	288	high	337784	pericentromeric	46	no-CHH	no-CHH	.	.	.	.	.
Chr5	10856754	10856782	AT5TE39450	.	+	ATHPOGON3	Pogo	DNA	28	tiny	118	medium	337756	pericentromeric	18	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	10858743	10858770	AT5TE39455	.	-	HELITRONY1D	Helitron	RC	27	tiny	756	high	335768	pericentromeric	349	no-CHH	no-CHH	.	.	.	.	.
Chr5	10858770	10860178	AT5TE39460	.	+	ATREP10D	Helitron	RC	1408	short	1295	high	334360	pericentromeric	376	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10860178	10860282	AT5TE39465	.	-	ATREP5	Helitron	RC	104	short	624	high	334256	pericentromeric	1784	no-CHH	no-CHH	.	.	.	.	.
Chr5	10864855	10864916	AT5TE39475	.	+	ATCOPIA30	Copia	LTR	61	tiny	33	low	329622	pericentromeric	831	no-CHH	no-RdDM	LowExpressed	.	.	.	.
Chr5	10864930	10869375	AT5TE39480	.	+	HELITRONY3	Helitron	RC	4445	medium	1399	high	325163	pericentromeric	906	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	10869380	10873247	AT5TE39485	.	+	ATGP7	Gypsy	LTR	3867	medium	47	low	321291	pericentromeric	4112	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	10873254	10873661	AT5TE39490	.	+	ATREP4	Helitron	RC	407	short	832	high	320877	pericentromeric	3698	no-RdDM	no-CHH	.	.	.	.	.
Chr5	10873662	10875644	AT5TE39495	.	+	ATREP11A	Helitron	RC	1982	short	95	medium	318894	pericentromeric	1715	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	10875644	10875690	AT5TE39500	.	-	HELITRONY1D	Helitron	RC	46	tiny	756	high	318848	pericentromeric	1669	no-CHH	RDR6-RdDM	.	.	.	.	.
Chr5	10875690	10875763	AT5TE39505	.	-	ATREP3	Helitron	RC	73	tiny	1439	high	318775	pericentromeric	1596	no-CHH	no-CHH	.	.	.	.	.
Chr5	10875763	10875783	AT5TE39510	.	+	ATENSPM4	En-Spm	DNA	20	tiny	50	medium	318755	pericentromeric	1576	no-CHH	no-CHH	.	.	.	.	.
Chr5	10876347	10876439	AT5TE39515	.	-	ATTIRX1A	.	DNA	92	tiny	63	medium	318099	pericentromeric	920	no-CHH	no-CHH	.	.	.	.	.
Chr5	10881431	10881496	AT5TE39525	.	-	ATREP9	Helitron	RC	66	tiny	201	high	313042	pericentromeric	152	.	.	.	.	.	.	.
Chr5	10881496	10882248	AT5TE39530	.	+	ATREP11	Helitron	RC	752	short	841	high	312290	pericentromeric	218	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	10882961	10884426	AT5TE39535	.	+	ATLANTYS3	Gypsy	LTR	1465	short	142	medium	310112	pericentromeric	1683	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	10884473	10884521	AT5TE39540	.	+	ATLANTYS2	Gypsy	LTR	48	tiny	179	medium	310017	pericentromeric	3195	no-RdDM	no-CHH	.	.	.	.	.
Chr5	10884521	10884784	AT5TE39545	.	+	ATLANTYS3	Gypsy	LTR	263	short	142	medium	309754	pericentromeric	3243	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	10884784	10892304	AT5TE39550	.	+	ATLANTYS3	Gypsy	LTR	7520	long	142	medium	302234	pericentromeric	3506	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	10885913	10886045	AT5TE39555	.	+	ATLANTYS3	Gypsy	LTR	132	short	142	medium	308493	pericentromeric	4635	no-RdDM	no-CHH	.	.	.	.	.
Chr5	10886046	10888108	AT5TE39560	.	-	ATGP10	Gypsy	LTR	2062	medium	165	medium	306430	pericentromeric	4768	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	10886783	10886872	AT5TE39565	.	-	ATGP10	Gypsy	LTR	89	tiny	165	medium	307666	pericentromeric	5505	no-RdDM	no-CHH	.	.	.	.	.
Chr5	10888926	10889285	AT5TE39570	.	+	ATHILA4B_LTR	Gypsy	LTR	359	short	143	medium	305253	pericentromeric	7455	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	10892387	10893053	AT5TE39580	.	-	BRODYAGA2	MuDR	DNA	666	short	525	high	301485	pericentromeric	3687	no-RdDM	no-CHH	.	.	.	.	.
Chr5	10893702	10894247	AT5TE39585	.	+	ATLANTYS3	Gypsy	LTR	545	short	142	medium	300291	pericentromeric	2493	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	10894252	10894755	AT5TE39590	.	-	ATHAT2	HAT	DNA	503	short	19	low	299783	pericentromeric	1985	no-RdDM	no-RdDM	ExpressedAndAnnotated	10895179,10895186	10894124,10894192	-,-	transcript_id-"a493cbdf-55ef-4b67-894e-009db48cc7a4|13",transcript_id-"0756bc0e-6907-4da4-9f79-22882324f0a1|5"
Chr5	10898943	10899422	AT5TE39600	.	+	HELITRONY1D	Helitron	RC	479	short	756	high	295116	pericentromeric	763	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	10899422	10899667	AT5TE39605	.	-	ATDNA2T9C	MuDR	DNA	245	short	242	high	294871	pericentromeric	1242	no-RdDM	no-CHH	.	.	.	.	.
Chr5	10900064	10900310	AT5TE39610	.	-	VANDAL3	MuDR	DNA	246	short	177	medium	294228	pericentromeric	1884	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	10900399	10900614	AT5TE39615	.	-	VANDALNX2	MuDR	DNA	215	short	37	low	293924	pericentromeric	2219	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	10900614	10901545	AT5TE39620	.	-	ATDNA2T9C	MuDR	DNA	931	short	242	high	292993	pericentromeric	2434	no-RdDM	no-CHH	.	.	.	.	.
Chr5	10901545	10901648	AT5TE39625	.	-	VANDALNX2	MuDR	DNA	103	short	37	low	292890	pericentromeric	3365	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	10901850	10903017	AT5TE39630	.	-	ATIS112A	Harbinger	DNA	1167	short	173	medium	291521	pericentromeric	3670	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	10903105	10903227	AT5TE39635	.	-	ATMU2	MuDR	DNA	122	short	64	medium	291311	pericentromeric	4925	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	10903728	10904674	AT5TE39640	.	-	ATIS112A	Harbinger	DNA	946	short	173	medium	289864	pericentromeric	5548	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	10906713	10908165	AT5TE39645	.	+	HELITRON4	Helitron	RC	1452	short	199	medium	286373	pericentromeric	8533	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	10908580	10909787	AT5TE39650	.	-	ATHILA4B_LTR	Gypsy	LTR	1207	short	143	medium	284751	pericentromeric	10400	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	10909791	10909832	AT5TE39655	.	-	ATHILA4D_LTR	Gypsy	LTR	41	tiny	106	medium	284706	pericentromeric	11611	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	10909832	10910145	AT5TE39660	.	+	HELITRON3	Helitron	RC	313	short	53	medium	284393	pericentromeric	11652	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	10910145	10911963	AT5TE39665	.	+	HELITRON2	Helitron	RC	1818	short	194	medium	282575	pericentromeric	11965	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	10912379	10912709	AT5TE39670	.	+	ATMUNX1	MuDR	DNA	330	short	155	medium	281829	pericentromeric	13142	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	10912899	10912936	AT5TE39675	.	+	ATREP19	.	DNA	37	tiny	189	medium	281602	pericentromeric	12915	no-RdDM	no-CHH	.	.	.	.	.
Chr5	10912936	10913276	AT5TE39680	.	+	ATREP5	Helitron	RC	340	short	624	high	281262	pericentromeric	12575	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	10913393	10914447	AT5TE39685	.	-	ROMANIAT5	Copia	LTR	1054	short	49	low	280091	pericentromeric	11404	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	10914460	10915057	AT5TE39690	.	-	ATCOPIA28	Copia	LTR	597	short	81	medium	279481	pericentromeric	10794	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	10915515	10915622	AT5TE39695	.	+	ARNOLDY2	MuDR	DNA	107	short	288	high	278916	pericentromeric	10229	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10915622	10915850	AT5TE39700	.	-	ARNOLDY1	MuDR	DNA	228	short	237	high	278688	pericentromeric	10001	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10915850	10917820	AT5TE39705	.	+	HELITRONY3	Helitron	RC	1970	short	1399	high	276718	pericentromeric	8031	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	10917820	10917906	AT5TE39710	.	+	BRODYAGA1A	MuDR	DNA	86	tiny	586	high	276632	pericentromeric	7945	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10917906	10918735	AT5TE39715	.	+	BRODYAGA1A	MuDR	DNA	829	short	586	high	275803	pericentromeric	7116	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10919075	10919496	AT5TE39720	.	-	ARNOLDY1	MuDR	DNA	421	short	237	high	275042	pericentromeric	6355	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10919953	10919973	AT5TE39725	.	+	ATREP10D	Helitron	RC	20	tiny	1295	high	274565	pericentromeric	5878	no-CHH	no-CHH	.	.	.	.	.
Chr5	10919973	10920139	AT5TE39730	.	-	BRODYAGA2	MuDR	DNA	166	short	525	high	274399	pericentromeric	5712	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	10920139	10920858	AT5TE39735	.	+	ATREP10B	Helitron	RC	719	short	491	high	273680	pericentromeric	4993	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	10920988	10921177	AT5TE39740	.	+	ATDNA12T3_2	.	DNA	189	short	660	high	273361	pericentromeric	4674	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10921425	10922294	AT5TE39745	.	-	ATREP15	Helitron	RC	869	short	1003	high	272244	pericentromeric	3557	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	10922294	10922375	AT5TE39750	.	+	BRODYAGA2	MuDR	DNA	81	tiny	525	high	272163	pericentromeric	3476	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	10924242	10924355	AT5TE39755	.	-	ATREP7	Helitron	RC	113	short	164	medium	270183	pericentromeric	1496	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	10924968	10925607	AT5TE39760	.	+	HELITRONY1E	Helitron	RC	639	short	447	high	268931	pericentromeric	244	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	10933812	10933906	AT5TE39790	.	-	ATLINE1A	L1	LINE	94	tiny	289	high	260632	pericentromeric	1237	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	10933822	10934730	AT5TE39795	.	-	SADHU	.	Unassigned	908	short	16	low	259808	pericentromeric	1247	no-CHH	no-CHH	ExpressedAndAnnotated	10934716,10934735,10933879	10933747,10933861,10934885	-,-,+	transcript_id-"600e908c-8c8e-4866-bac7-bcb4f0ecb04c|37",transcript_id-"941fad25-2c76-46a5-9c84-81a643ed42e3|22",transcript_id-"82dc4e9e-8791-4aec-bd75-046c22b8beaf|5"
Chr5	10935727	10936195	AT5TE39800	.	-	ATCOPIA95	Copia	LTR	468	short	72	medium	258343	pericentromeric	3152	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	10936205	10936342	AT5TE39805	.	-	ATHILA4B_LTR	Gypsy	LTR	137	short	143	medium	258196	pericentromeric	3630	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	10938376	10939556	AT5TE39810	.	+	ATHILA4B_LTR	Gypsy	LTR	1180	short	143	medium	254982	pericentromeric	1027	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	10944136	10945261	AT5TE39820	.	-	ATREP16	MuDR	DNA	1125	short	47	low	249277	pericentromeric	758	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10945791	10945833	AT5TE39825	.	-	ATENSPM6	En-Spm	DNA	42	tiny	151	medium	248705	pericentromeric	2413	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr5	10945833	10954123	AT5TE39830	.	-	ATENSPM5	En-Spm	DNA	8290	long	111	medium	240415	pericentromeric	2455	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	10949168,10949908,10950615	10946442,10949573,10949592	-,-,-	transcript_id-"78907170-faa1-4d00-acab-2ce7aff7c6c8|6",transcript_id-"e614d3cd-944d-46cc-8b0d-6d6adce57e7a|5",transcript_id-"4909cfc7-48e6-4d66-a653-047184b34918|3"
Chr5	10954123	10954291	AT5TE39835	.	-	VANDAL3	MuDR	DNA	168	short	177	medium	240247	pericentromeric	7334	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10954719	10954837	AT5TE39840	.	-	VANDAL3	MuDR	DNA	118	short	177	medium	239701	pericentromeric	6788	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	10954837	10956806	AT5TE39845	.	-	VANDAL3	MuDR	DNA	1969	short	177	medium	237732	pericentromeric	4819	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	10958668	10958894	AT5TE39850	.	+	ATGP10	Gypsy	LTR	226	short	165	medium	235644	pericentromeric	2731	no-RdDM	no-RdDM	ExpressedAndAnnotated	10957934,10957934	10959012,10959275	+,+	transcript_id-"3a83d078-7507-4b50-a50f-eabb26f98ba2|520",transcript_id-"7de38e3d-151a-46d0-acd9-8446f196fa85|11"
Chr5	10959969	10960593	AT5TE39855	.	-	ATENSPM6	En-Spm	DNA	624	short	151	medium	233945	pericentromeric	1032	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	10960593	10960628	AT5TE39860	.	-	ATENSPM9	En-Spm	DNA	35	tiny	97	medium	233910	pericentromeric	997	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	10962027	10963121	AT5TE39865	.	-	ATLINE1_5	L1	LINE	1094	short	91	medium	231417	pericentromeric	246	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	10963128	10963473	AT5TE39870	.	+	ATGP10	Gypsy	LTR	345	short	165	medium	231065	pericentromeric	1347	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	10964155	10964475	AT5TE39875	.	-	ATGP7	Gypsy	LTR	320	short	47	low	230063	pericentromeric	2374	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	10965659	10966527	AT5TE39880	.	+	ATGP10	Gypsy	LTR	868	short	165	medium	228011	pericentromeric	3878	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	10966540	10967172	AT5TE39885	.	-	ATENSPM10	En-Spm	DNA	632	short	81	medium	227366	pericentromeric	4759	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	10968105	10968816	AT5TE39890	.	+	ATHILA4A	Gypsy	LTR	711	short	310	high	225722	pericentromeric	6324	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	10968816	10970028	AT5TE39895	.	-	VANDAL9	MuDR	DNA	1212	short	43	low	224510	pericentromeric	7035	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	10970028	10970100	AT5TE39900	.	-	VANDAL12	MuDR	DNA	72	tiny	37	low	224438	pericentromeric	8247	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	10972235	10976403	AT5TE39905	.	-	VANDAL11	MuDR	DNA	4168	medium	18	low	218135	pericentromeric	10454	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	10973773	10973864	AT5TE39910	.	-	VANDAL9	MuDR	DNA	91	tiny	43	low	220674	pericentromeric	11992	no-RdDM	no-CHH	.	.	.	.	.
Chr5	10976403	10976791	AT5TE39915	.	-	VANDAL9	MuDR	DNA	388	short	43	low	217747	pericentromeric	14622	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	10976848	10977393	AT5TE39920	.	-	HELITRON4	Helitron	RC	545	short	199	medium	217145	pericentromeric	15067	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	10977393	10977436	AT5TE39925	.	-	HELITRON4	Helitron	RC	43	tiny	199	medium	217102	pericentromeric	15068	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	10977436	10977504	AT5TE39930	.	-	HELITRON4	Helitron	RC	68	tiny	199	medium	217034	pericentromeric	15000	no-RdDM	no-CHH	.	.	.	.	.
Chr5	10977504	10979826	AT5TE39935	.	-	HELITRON1	Helitron	RC	2322	medium	130	medium	214712	pericentromeric	12678	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	10981288	10984142	AT5TE39940	.	-	HELITRON4	Helitron	RC	2854	medium	199	medium	210396	pericentromeric	8362	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	10984142	10984462	AT5TE39945	.	-	HELITRON1	Helitron	RC	320	short	130	medium	210076	pericentromeric	8042	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	10985379	10985722	AT5TE39950	.	-	HELITRON1	Helitron	RC	343	short	130	medium	208816	pericentromeric	6782	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	10985722	10987705	AT5TE39955	.	-	HELITRON4	Helitron	RC	1983	short	199	medium	206833	pericentromeric	4799	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	10987705	10988199	AT5TE39960	.	-	HELITRON1	Helitron	RC	494	short	130	medium	206339	pericentromeric	4305	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	10989669	10989937	AT5TE39965	.	+	ATTIRX1A	.	DNA	268	short	63	medium	204601	pericentromeric	2567	no-CHH	no-CHH	.	.	.	.	.
Chr5	10995798	10996459	AT5TE39980	.	-	ATREP3	Helitron	RC	661	short	1439	high	198079	pericentromeric	131	no-CHH	no-CHH	.	.	.	.	.
Chr5	10997549	10997805	AT5TE39985	.	+	ATTIRTA1	Tc1	DNA	256	short	95	medium	196733	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	10999016	10999752	AT5TE39990	.	-	ARNOLDY2	MuDR	DNA	736	short	288	high	194786	pericentromeric	233	no-CHH	no-CHH	.	.	.	.	.
Chr5	11000355	11001025	AT5TE39995	.	+	SIMPLEGUY1	Harbinger	DNA	670	short	116	medium	193513	pericentromeric	1572	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	11001025	11018940	AT5TE40000	.	-	VANDAL5	MuDR	DNA	17915	long	85	medium	175598	pericentromeric	2242	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	11018940	11018999	AT5TE40005	.	-	VANDAL5	MuDR	DNA	59	tiny	85	medium	175539	pericentromeric	3336	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	11019343	11020538	AT5TE40010	.	-	HELITRONY1C	Helitron	RC	1195	short	120	medium	174000	pericentromeric	1797	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	11020538	11021382	AT5TE40015	.	+	ATREP10D	Helitron	RC	844	short	1295	high	173156	pericentromeric	953	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	11021382	11022163	AT5TE40020	.	-	HELITRONY1C	Helitron	RC	781	short	120	medium	172375	pericentromeric	172	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	11025027	11025223	AT5TE40030	.	-	HELITRONY1B	Helitron	RC	196	short	414	high	169315	pericentromeric	798	no-CHH	no-CHH	.	.	.	.	.
Chr5	11025223	11025336	AT5TE40035	.	+	ATREP3	Helitron	RC	113	short	1439	high	169202	pericentromeric	994	no-CHH	no-CHH	.	.	.	.	.
Chr5	11025336	11026520	AT5TE40040	.	+	ATREP3	Helitron	RC	1184	short	1439	high	168018	pericentromeric	1107	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	11026530	11026973	AT5TE40045	.	-	ATCOPIA44	Copia	LTR	443	short	12	low	167565	pericentromeric	2301	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	11026973	11027895	AT5TE40050	.	+	ATREP3	Helitron	RC	922	short	1439	high	166643	pericentromeric	2744	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	11027895	11028070	AT5TE40055	.	+	ATREP3	Helitron	RC	175	short	1439	high	166468	pericentromeric	3666	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	11028070	11028156	AT5TE40060	.	-	ATMU5	MuDR	DNA	86	tiny	24	low	166382	pericentromeric	3841	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	11029131	11029849	AT5TE40065	.	-	ATREP18	.	DNA	718	short	391	high	164689	pericentromeric	4902	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	11029849	11031097	AT5TE40070	.	+	ATREP9	Helitron	RC	1248	short	201	high	163441	pericentromeric	5620	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	11031097	11031252	AT5TE40075	.	+	ATENSPM2	En-Spm	DNA	155	short	114	medium	163286	pericentromeric	6868	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	11031270	11039070	AT5TE40080	.	+	ATENSPM2	En-Spm	DNA	7800	long	114	medium	155468	pericentromeric	7041	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	11036061	11036474	AT5TE40085	.	+	HARBINGER	Harbinger	DNA	413	short	90	medium	158064	pericentromeric	11832	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	11042769	11051123	AT5TE40100	.	-	ATLANTYS2	Gypsy	LTR	8354	long	179	medium	143415	pericentromeric	18540	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	11046444,11049926	11046648,11050456	+,+	transcript_id-"12b15548-417b-4e62-8b8e-de4e1d06067c|3",transcript_id-"420ef178-4847-422c-ac06-c75ac2b09203|4"
Chr5	11051123	11053046	AT5TE40105	.	-	ATGP10	Gypsy	LTR	1923	short	165	medium	141492	pericentromeric	26894	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	11053046	11055038	AT5TE40110	.	-	ATGP10	Gypsy	LTR	1992	short	165	medium	139500	pericentromeric	28817	no-RdDM	no-RdDM	ExpressedAndAnnotated	11054611	11054007	-	transcript_id-"85c90ce4-f0ec-4849-ac21-7dac79b25072|3"
Chr5	11055143	11055216	AT5TE40115	.	-	ATLANTYS2	Gypsy	LTR	73	tiny	179	medium	139322	pericentromeric	30914	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	11055216	11057343	AT5TE40120	.	-	ATLANTYS2	Gypsy	LTR	2127	medium	179	medium	137195	pericentromeric	30987	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	11057343	11057452	AT5TE40125	.	-	ATLANTYS2	Gypsy	LTR	109	short	179	medium	137086	pericentromeric	33114	no-CHH	no-CHH	ExpressedAndAnnotated	11057396	11059438	+	transcript_id-"b3a1e54e-088e-4906-a2ef-f3e2b6c82ef5|9"
Chr5	11057822	11058673	AT5TE40130	.	+	ATENSPM9	En-Spm	DNA	851	short	97	medium	135865	pericentromeric	33593	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	11057396	11059438	+	transcript_id-"b3a1e54e-088e-4906-a2ef-f3e2b6c82ef5|9"
Chr5	11060647	11061571	AT5TE40135	.	+	ATENSPM4	En-Spm	DNA	924	short	50	medium	132967	pericentromeric	36418	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	11062526	11064256	AT5TE40140	.	-	ATCOPIA28	Copia	LTR	1730	short	81	medium	130282	pericentromeric	38297	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	11065207	11065343	AT5TE40145	.	-	VANDAL17	MuDR	DNA	136	short	178	medium	129195	pericentromeric	40978	no-RdDM	no-CHH	.	.	.	.	.
Chr5	11065343	11066529	AT5TE40150	.	-	ATHILA4B_LTR	Gypsy	LTR	1186	short	143	medium	128009	pericentromeric	40851	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	11066529	11067024	AT5TE40155	.	-	VANDAL6	MuDR	DNA	495	short	89	medium	127514	pericentromeric	40356	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	11071976	11073970	AT5TE40165	.	+	ATHILA	Gypsy	LTR	1994	short	198	medium	120568	pericentromeric	33410	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	11073970	11076520	AT5TE40170	.	-	ATHILA4A	Gypsy	LTR	2550	medium	310	high	118018	pericentromeric	30860	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	11076520	11078225	AT5TE40175	.	-	ATHILA4	Gypsy	LTR	1705	short	250	high	116313	pericentromeric	29155	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	11078225	11081724	AT5TE40180	.	+	ATHILA2	Gypsy	LTR	3499	medium	413	high	112814	pericentromeric	25656	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	11081724	11081808	AT5TE40185	.	+	ATHILA0_I	Gypsy	LTR	84	tiny	138	medium	112730	pericentromeric	25572	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	11081826	11083547	AT5TE40190	.	+	ATHILA6B	Gypsy	LTR	1721	short	134	medium	110991	pericentromeric	23833	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr5	11083547	11086024	AT5TE40195	.	+	ATHILA2	Gypsy	LTR	2477	medium	413	high	108514	pericentromeric	21356	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	11086485	11086551	AT5TE40200	.	+	ATLANTYS1	Gypsy	LTR	66	tiny	153	medium	107987	pericentromeric	20829	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	11087004	11087642	AT5TE40205	.	+	TAT1_ATH	Gypsy	LTR	638	short	87	medium	106896	pericentromeric	19738	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	11088036	11088149	AT5TE40210	.	+	ATLANTYS1	Gypsy	LTR	113	short	153	medium	106389	pericentromeric	19231	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	11088149	11091875	AT5TE40215	.	+	ATLANTYS1	Gypsy	LTR	3726	medium	153	medium	102663	pericentromeric	15505	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	11090600	11090632	AT5TE40220	.	+	ATLANTYS2	Gypsy	LTR	32	tiny	179	medium	103906	pericentromeric	16748	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	11093753	11093903	AT5TE40230	.	+	ATDNA12T3A	.	DNA	150	short	22	low	100635	pericentromeric	13477	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	11093903	11094145	AT5TE40235	.	+	ATGP10	Gypsy	LTR	242	short	165	medium	100393	pericentromeric	13235	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	11098655	11098734	AT5TE40245	.	+	TAT1_ATH	Gypsy	LTR	79	tiny	87	medium	95804	pericentromeric	8646	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	11099167	11099205	AT5TE40250	.	+	ATHILA6A	Gypsy	LTR	38	tiny	247	high	95333	pericentromeric	8175	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	11099205	11100322	AT5TE40255	.	+	ATHILA2	Gypsy	LTR	1117	short	413	high	94216	pericentromeric	7058	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	11100322	11102707	AT5TE40260	.	-	ATHILA4	Gypsy	LTR	2385	medium	250	high	91831	pericentromeric	4673	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	11102707	11104361	AT5TE40265	.	+	ATHILA	Gypsy	LTR	1654	short	198	medium	90177	pericentromeric	3019	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	11104364	11106872	AT5TE40270	.	+	ATHILA6A	Gypsy	LTR	2508	medium	247	high	87666	pericentromeric	508	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	11107582	11111508	AT5TE40275	.	+	ATHILA	Gypsy	LTR	3926	medium	198	medium	83030	pericentromeric	70	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	11112465	11116653	AT5TE40280	.	-	ATLANTYS1	Gypsy	LTR	4188	medium	153	medium	77885	pericentromeric	182	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	11114019	11114099	AT5TE40285	.	-	ATLANTYS2	Gypsy	LTR	80	tiny	179	medium	80439	pericentromeric	1736	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	11117070	11123140	AT5TE40295	.	+	ATENSPM5	En-Spm	DNA	6070	long	111	medium	71398	pericentromeric	56	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	11119154,11122074,11122742	11119517,11123609,11123666	+,+,+	transcript_id-"1e191585-d502-4947-8054-5567d079ef0d|3",transcript_id-"55950aec-5320-485e-a075-a1469fc34a9f|12",transcript_id-"65da62d4-5a0c-4247-9e03-8408d24465a4|6"
Chr5	11123140	11123325	AT5TE40300	.	+	ATENSPM5	En-Spm	DNA	185	short	111	medium	71213	pericentromeric	6126	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	11123325	11123363	AT5TE40305	.	+	ATENSPM6	En-Spm	DNA	38	tiny	151	medium	71175	pericentromeric	6311	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	11123372	11126365	AT5TE40310	.	-	ATHILA8A	Gypsy	LTR	2993	medium	97	medium	68173	pericentromeric	5809	no-RdDM	no-RdDM	ExpressedAndAnnotated	11122074,11122742	11123609,11123666	+,+	transcript_id-"55950aec-5320-485e-a075-a1469fc34a9f|12",transcript_id-"65da62d4-5a0c-4247-9e03-8408d24465a4|6"
Chr5	11126366	11127592	AT5TE40315	.	+	ATGP10	Gypsy	LTR	1226	short	165	medium	66946	pericentromeric	4582	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	11127641	11129603	AT5TE40320	.	-	ATGP2N	Gypsy	LTR	1962	short	54	medium	64935	pericentromeric	2571	no-RdDM	no-CHH	.	.	.	.	.
Chr5	11129611	11129681	AT5TE40325	.	-	ATDNA12T3A	.	DNA	70	tiny	22	low	64857	pericentromeric	2493	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	11129681	11131268	AT5TE40330	.	-	ATGP10	Gypsy	LTR	1587	short	165	medium	63270	pericentromeric	906	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	11133745	11133909	AT5TE40335	.	+	ATGP10	Gypsy	LTR	164	short	165	medium	60629	pericentromeric	229	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	11134240	11136816	AT5TE40340	.	-	ATHILA4A	Gypsy	LTR	2576	medium	310	high	57722	pericentromeric	724	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	11136816	11138261	AT5TE40345	.	-	ATHILA4	Gypsy	LTR	1445	short	250	high	56277	pericentromeric	3300	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	11138261	11145279	AT5TE40350	.	-	ATGP2	Gypsy	LTR	7018	long	48	low	49259	pericentromeric	4745	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	11145280	11147977	AT5TE40355	.	-	ATHILA4	Gypsy	LTR	2697	medium	250	high	46561	pericentromeric	5488	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	11147977	11148013	AT5TE40360	.	-	ATHILA4B_LTR	Gypsy	LTR	36	tiny	143	medium	46525	pericentromeric	5452	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	11148294	11148848	AT5TE40365	.	-	ATGP10	Gypsy	LTR	554	short	165	medium	45690	pericentromeric	4617	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	11149173	11149503	AT5TE40370	.	-	ATGP10	Gypsy	LTR	330	short	165	medium	45035	pericentromeric	3962	no-RdDM	no-CHH	.	.	.	.	.
Chr5	11149503	11149768	AT5TE40375	.	+	ATGP10	Gypsy	LTR	265	short	165	medium	44770	pericentromeric	3697	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	11149768	11152097	AT5TE40380	.	-	ATHILA8A	Gypsy	LTR	2329	medium	97	medium	42441	pericentromeric	1368	no-RdDM	no-CHH	.	.	.	.	.
Chr5	11152098	11157292	AT5TE40385	.	-	ATGP10	Gypsy	LTR	5194	long	165	medium	37246	pericentromeric	0	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	11158826	11156804	-	transcript_id-"a91598b0-4dfc-4c5d-a724-7c5a3a8297ff|4"
Chr5	11157292	11157695	AT5TE40390	.	-	ATGP10	Gypsy	LTR	403	short	165	medium	36843	pericentromeric	2082	no-RdDM	no-CHH	.	.	.	.	.
Chr5	11158084	11158265	AT5TE40395	.	-	ATHILA4C	Gypsy	LTR	181	short	206	high	36273	pericentromeric	2874	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	11158265	11159457	AT5TE40400	.	-	ATHILA4C	Gypsy	LTR	1192	short	206	high	35081	pericentromeric	3055	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	11158826	11156804	-	transcript_id-"a91598b0-4dfc-4c5d-a724-7c5a3a8297ff|4"
Chr5	11159457	11159505	AT5TE40405	.	+	ATHILA4	Gypsy	LTR	48	tiny	250	high	35033	pericentromeric	4247	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	11159505	11163730	AT5TE40410	.	+	ATHILA4	Gypsy	LTR	4225	medium	250	high	30808	pericentromeric	4295	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	11163731	11166119	AT5TE40415	.	+	ATHILA4A	Gypsy	LTR	2388	medium	310	high	28419	pericentromeric	8521	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	11166119	11170946	AT5TE40420	.	-	ATHILA4C	Gypsy	LTR	4827	medium	206	high	23592	pericentromeric	10909	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	11170949	11175204	AT5TE40425	.	-	ATENSPM1	En-Spm	DNA	4255	medium	30	low	19334	pericentromeric	15338	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	11174221,11174221	11171318,11171383	-,-	transcript_id-"26d284c9-8457-4289-be95-d57429be8339|5",transcript_id-"3c17efa1-6b6c-4a0f-a1f4-d5c2c461f739|14"
Chr5	11175204	11175913	AT5TE40430	.	-	ATHILA4C	Gypsy	LTR	709	short	206	high	18625	pericentromeric	14629	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	11175918	11177253	AT5TE40435	.	-	ATHILA4	Gypsy	LTR	1335	short	250	high	17285	pericentromeric	13289	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	11177254	11178305	AT5TE40440	.	-	ATHILA	Gypsy	LTR	1051	short	198	medium	16233	pericentromeric	12237	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	11178305	11178731	AT5TE40445	.	-	ATHILA6A	Gypsy	LTR	426	short	247	high	15807	pericentromeric	11811	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr5	11178732	11178875	AT5TE40450	.	-	ATHILA6B	Gypsy	LTR	144	short	134	medium	15663	pericentromeric	11667	.	.	.	.	.	.	.
Chr5	11178875	11182634	AT5TE40455	.	-	ATHILA	Gypsy	LTR	3759	medium	198	medium	11904	pericentromeric	7908	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	11182634	11183046	AT5TE40460	.	-	ATHILA2	Gypsy	LTR	412	short	413	high	11492	pericentromeric	7496	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	11183046	11184521	AT5TE40465	.	-	ATHILA	Gypsy	LTR	1475	short	198	medium	10017	pericentromeric	6021	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	11184522	11184545	AT5TE40470	.	-	ATHILA2	Gypsy	LTR	24	tiny	413	high	9993	pericentromeric	5997	.	.	.	.	.	.	.
Chr5	11184834	11185400	AT5TE40475	.	-	ATDNA12T3_2	.	DNA	566	short	660	high	9138	pericentromeric	5142	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	11185838	11186404	AT5TE40480	.	-	ATDNA12T3_2	.	DNA	566	short	660	high	8134	pericentromeric	4138	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	11186844	11186907	AT5TE40485	.	-	ATDNA12T3_2	.	DNA	64	tiny	660	high	7631	pericentromeric	3635	.	.	.	.	.	.	.
Chr5	11187345	11187911	AT5TE40490	.	-	ATDNA12T3_2	.	DNA	566	short	660	high	6627	pericentromeric	2631	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	11188351	11188917	AT5TE40495	.	-	ATDNA12T3_2	.	DNA	566	short	660	high	5621	pericentromeric	1625	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	11189232	11190290	AT5TE40500	.	+	SIMPLEGUY1	Harbinger	DNA	1058	short	116	medium	4248	pericentromeric	252	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	11192673	11193130	AT5TE40505	.	-	ATHILA6A	Gypsy	LTR	457	short	247	high	1408	pericentromeric	710	no-RdDM	no-RdDM	ExpressedAndAnnotated	11193671	11192474	-	transcript_id-"7569f9a7-b67d-4f97-9d99-638e053c2e9d|3"
Chr5	11194167	11194435	AT5TE40510	.	-	ATGP10	Gypsy	LTR	268	short	165	medium	103	pericentromeric	2204	no-RdDM	no-CHH	ExpressedAndAnnotated	11194018	11194436	+	transcript_id-"4b0de268-c184-40d7-9eb9-c0a49ab33972|23"
Chr5	11194849	11195536	AT5TE40515	.	+	ATHILA2	Gypsy	LTR	687	short	413	high	0	pericentromeric	2886	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	11195536	11197049	AT5TE40520	.	+	ATENSPM6	En-Spm	DNA	1513	short	151	medium	0	pericentromeric	3573	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	11197049	11198434	AT5TE40525	.	+	ATHILA4C	Gypsy	LTR	1385	short	206	high	0	pericentromeric	5086	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	11198434	11202846	AT5TE40530	.	+	ATGP10	Gypsy	LTR	4412	medium	165	medium	0	pericentromeric	6471	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	11201753	11201842	AT5TE40535	.	+	ATDNA12T3A	.	DNA	89	tiny	22	low	0	pericentromeric	9790	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	11203440	11203511	AT5TE40540	.	-	ATHILA	Gypsy	LTR	72	tiny	198	medium	0	pericentromeric	11476	.	.	.	.	.	.	.
Chr5	11203511	11205075	AT5TE40545	.	-	ATHILA	Gypsy	LTR	1564	short	198	medium	0	pericentromeric	11548	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	11205075	11205399	AT5TE40550	.	-	ATHILA4B_LTR	Gypsy	LTR	324	short	143	medium	0	pericentromeric	13112	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	11205401	11206723	AT5TE40555	.	+	ATHILA4D_LTR	Gypsy	LTR	1322	short	106	medium	0	pericentromeric	13438	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	11206832	11210857	AT5TE40560	.	+	ATHILA4C	Gypsy	LTR	4025	medium	206	high	0	pericentromeric	14869	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	11211364	11213107	AT5TE40565	.	+	ATENSPM6	En-Spm	DNA	1743	short	151	medium	0	pericentromeric	19401	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	11211353	11213952	+	transcript_id-"7549aa70-365b-4d09-976d-d48f7d920901|15"
Chr5	11213107	11213189	AT5TE40570	.	+	ATENSPM6	En-Spm	DNA	82	tiny	151	medium	0	pericentromeric	21144	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	11213189	11218091	AT5TE40575	.	+	ATHILA2	Gypsy	LTR	4902	medium	413	high	0	pericentromeric	21226	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	11211353	11213952	+	transcript_id-"7549aa70-365b-4d09-976d-d48f7d920901|15"
Chr5	11218402	11222907	AT5TE40580	.	+	ATENSPM5	En-Spm	DNA	4505	medium	111	medium	0	pericentromeric	26439	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	11223322	11223641	AT5TE40585	.	+	ATHILA4B_LTR	Gypsy	LTR	319	short	143	medium	4920	pericentromeric	31359	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	11223641	11225871	AT5TE40590	.	-	ATHILA4A	Gypsy	LTR	2230	medium	310	high	5239	pericentromeric	31678	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	11225871	11225895	AT5TE40595	.	-	ATHILA4A	Gypsy	LTR	24	tiny	310	high	7469	pericentromeric	33908	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr5	11226054	11226115	AT5TE40600	.	-	ATDNA12T3_2	.	DNA	62	tiny	660	high	7651	pericentromeric	34090	.	.	.	.	.	.	.
Chr5	11227043	11227495	AT5TE40660	.	-	ATLANTYS1	Gypsy	LTR	452	short	153	medium	8641	pericentromeric	35080	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr5	11228455	11228552	AT5TE40670	.	+	ATHILA2	Gypsy	LTR	98	tiny	413	high	10052	pericentromeric	36491	.	.	.	.	.	.	.
Chr5	11228552	11228758	AT5TE40675	.	+	ATHILA2	Gypsy	LTR	206	short	413	high	10150	pericentromeric	36589	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	11268192	11268217	AT5TE40820	.	-	ATENSPM6	En-Spm	DNA	25	tiny	151	medium	49790	pericentromeric	12359	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	11268217	11268256	AT5TE40825	.	-	ATENSPM6	En-Spm	DNA	39	tiny	151	medium	49815	pericentromeric	12320	no-CHH	no-RdDM	.	.	.	.	.
Chr5	11268256	11271810	AT5TE40830	.	-	ATENSPM5	En-Spm	DNA	3554	medium	111	medium	49854	pericentromeric	8766	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	11271967	11273635	AT5TE40835	.	+	ATMU10	MuDR	DNA	1668	short	87	medium	53565	pericentromeric	6941	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	11272266	11273743	+	transcript_id-"a753f730-62bd-44c7-b04d-025a7f610d61|6"
Chr5	11273635	11274796	AT5TE40840	.	+	ATMU9	MuDR	DNA	1161	short	16	low	55233	pericentromeric	5780	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	11275251	11275375	AT5TE40845	.	-	HELITRONY1D	Helitron	RC	124	short	756	high	56849	pericentromeric	5201	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	11275376	11276443	AT5TE40850	.	-	ATREP7	Helitron	RC	1068	short	164	medium	56973	pericentromeric	4133	.	.	.	.	.	.	.
Chr5	11276443	11277152	AT5TE40855	.	+	TNAT2A	.	DNA	709	short	38	low	58041	pericentromeric	3424	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	11277482	11277660	AT5TE40860	.	+	VANDAL21	MuDR	DNA	178	short	64	medium	59080	pericentromeric	2916	no-RdDM	no-CHH	.	.	.	.	.
Chr5	11278059	11278125	AT5TE40865	.	-	RathE1_cons	.	RathE1_cons	67	tiny	213	high	59656	pericentromeric	2451	.	.	.	.	.	.	.
Chr5	11282029	11282284	AT5TE40875	.	-	ATTIRX1D	.	DNA	255	short	28	low	63627	pericentromeric	919	no-CHH	no-CHH	.	.	.	.	.
Chr5	11282292	11282377	AT5TE40880	.	-	RathE1_cons	.	RathE1_cons	85	tiny	213	high	63890	pericentromeric	1182	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr5	11282418	11282654	AT5TE40885	.	+	ATREP10B	Helitron	RC	236	short	491	high	64016	pericentromeric	1308	no-CHH	no-CHH	.	.	.	.	.
Chr5	11282654	11282889	AT5TE40890	.	-	ARNOLD4	MuDR	DNA	235	short	23	low	64252	pericentromeric	1544	no-CHH	no-CHH	.	.	.	.	.
Chr5	11282889	11282966	AT5TE40895	.	-	ARNOLDY1	MuDR	DNA	77	tiny	237	high	64487	pericentromeric	1779	no-CHH	no-CHH	.	.	.	.	.
Chr5	11282966	11284792	AT5TE40900	.	-	ARNOLDY1	MuDR	DNA	1826	short	237	high	64564	pericentromeric	345	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	11284792	11284958	AT5TE40905	.	+	ATREP4	Helitron	RC	166	short	832	high	66390	pericentromeric	179	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	11286589	11286895	AT5TE40910	.	-	ATHILA0_I	Gypsy	LTR	306	short	138	medium	68187	pericentromeric	0	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	11286895	11287403	AT5TE40915	.	-	ATCOPIA41	Copia	LTR	508	short	39	low	68493	pericentromeric	291	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	11288813	11290081	AT5TE40920	.	-	ATHILA4A	Gypsy	LTR	1268	short	310	high	70411	pericentromeric	2209	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	11289963	11289571	-	transcript_id-"4e833962-9c31-4244-aa02-d35aef815e15|6"
Chr5	11290787	11290881	AT5TE40925	.	-	RathE3_cons	.	RathE3_cons	94	tiny	104	medium	72385	pericentromeric	4183	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	11290884	11292841	AT5TE40930	.	+	ATENSPM3	En-Spm	DNA	1957	short	98	medium	72482	pericentromeric	4280	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	11293245	11294541	AT5TE40935	.	+	ATHILA4D_LTR	Gypsy	LTR	1296	short	106	medium	74843	pericentromeric	6641	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	11294541	11294678	AT5TE40940	.	+	ATHILA4	Gypsy	LTR	137	short	250	high	76139	pericentromeric	7937	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	11294678	11299282	AT5TE40945	.	+	ATHILA4C	Gypsy	LTR	4604	medium	206	high	76276	pericentromeric	7615	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	11299865	11298882	-	transcript_id-"9e10be49-4f6f-45fa-b3fa-203821062ce0|4"
Chr5	11297626	11298718	AT5TE40950	.	+	BRODYAGA2	MuDR	DNA	1092	short	525	high	79224	pericentromeric	8179	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	11299282	11299330	AT5TE40955	.	+	ATHILA4A	Gypsy	LTR	48	tiny	310	high	80880	pericentromeric	7567	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	11300750	11304878	AT5TE40960	.	+	ATHILA4A	Gypsy	LTR	4128	medium	310	high	82348	pericentromeric	2019	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	11304878	11305995	AT5TE40965	.	+	BRODYAGA2	MuDR	DNA	1117	short	525	high	86476	pericentromeric	902	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	11305995	11306556	AT5TE40970	.	+	ATHILA4C	Gypsy	LTR	561	short	206	high	87593	pericentromeric	341	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	11306556	11306602	AT5TE40975	.	+	ATHILA4A	Gypsy	LTR	46	tiny	310	high	88154	pericentromeric	295	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	11307797	11308811	AT5TE40980	.	+	ATHILA4D_LTR	Gypsy	LTR	1014	short	106	medium	89395	pericentromeric	645	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	11309245	11309796	AT5TE40985	.	-	ATDNA12T3_2	.	DNA	551	short	660	high	90843	pericentromeric	2093	DCL3-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	11310199	11310262	AT5TE40990	.	-	ATDNA12T3_2	.	DNA	63	tiny	660	high	91797	pericentromeric	3047	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	11310684	11310755	AT5TE40995	.	-	ATDNA12T3_2	.	DNA	71	tiny	660	high	92282	pericentromeric	3532	no-CHH	no-RdDM	.	.	.	.	.
Chr5	11310992	11311056	AT5TE41000	.	-	ATDNA12T3_2	.	DNA	64	tiny	660	high	92590	pericentromeric	3840	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	11311483	11311545	AT5TE41005	.	-	ATDNA12T3_2	.	DNA	62	tiny	660	high	93081	pericentromeric	4331	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	11311993	11312064	AT5TE41010	.	-	ATDNA12T3_2	.	DNA	71	tiny	660	high	93591	pericentromeric	4841	no-RdDM	no-CHH	.	.	.	.	.
Chr5	11312473	11312551	AT5TE41015	.	-	ATDNA12T3_2	.	DNA	78	tiny	660	high	94071	pericentromeric	5321	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	11312736	11313383	AT5TE41020	.	+	HELITRONY1B	Helitron	RC	647	short	414	high	94334	pericentromeric	5584	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	11313383	11313457	AT5TE41025	.	-	ATREP13	Helitron	RC	74	tiny	106	medium	94981	pericentromeric	6231	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	11314305	11314387	AT5TE41030	.	-	ATDNA12T3_2	.	DNA	82	tiny	660	high	95903	pericentromeric	7153	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	11314812	11315358	AT5TE41035	.	-	ATDNA12T3_2	.	DNA	546	short	660	high	96410	pericentromeric	7660	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	11315783	11316277	AT5TE41040	.	-	ATDNA12T3_2	.	DNA	494	short	660	high	97381	pericentromeric	8631	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	11316773	11318989	AT5TE41045	.	+	ATLANTYS3	Gypsy	LTR	2216	medium	142	medium	98371	pericentromeric	9621	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	11317409	11318632	AT5TE41050	.	+	ATHILA4B_LTR	Gypsy	LTR	1223	short	143	medium	99007	pericentromeric	10257	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	11318989	11319685	AT5TE41055	.	-	ATHILA3	Gypsy	LTR	696	short	243	high	100587	pericentromeric	11837	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	11319685	11319792	AT5TE41060	.	-	ATCOPIA68	Copia	LTR	107	short	43	low	101283	pericentromeric	12533	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	11319792	11320500	AT5TE41065	.	+	ATHILA4A	Gypsy	LTR	708	short	310	high	101390	pericentromeric	12640	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	11320500	11331866	AT5TE41070	.	-	ATHILA6A	Gypsy	LTR	11366	long	247	high	102098	pericentromeric	13348	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	11321726,11322408	11321480,11321480	-,-	transcript_id-"771409da-ac6d-4b33-a711-c5298111c579|11",transcript_id-"c82cfa79-a789-4758-a765-6f10158a73ed|6"
Chr5	11331866	11332427	AT5TE41075	.	+	ATHILA4B_LTR	Gypsy	LTR	561	short	143	medium	113464	pericentromeric	24714	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	11333138	11333516	AT5TE41080	.	+	ATLINE1A	L1	LINE	378	short	289	high	114736	pericentromeric	25986	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	11333516	11333586	AT5TE41085	.	+	ATHPOGON3	Pogo	DNA	70	tiny	118	medium	115114	pericentromeric	26364	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	11333643	11337086	AT5TE41090	.	+	ATHILA	Gypsy	LTR	3443	medium	198	medium	115241	pericentromeric	26491	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr5	11337087	11339190	AT5TE41095	.	+	ATHILA4	Gypsy	LTR	2103	medium	250	high	118685	pericentromeric	26796	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	11339190	11339332	AT5TE41100	.	-	ATLANTYS1	Gypsy	LTR	142	short	153	medium	120788	pericentromeric	26654	no-RdDM	no-CHH	.	.	.	.	.
Chr5	11339332	11345338	AT5TE41105	.	-	ATGP2	Gypsy	LTR	6006	long	48	low	120930	pericentromeric	20648	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	11345338	11352731	AT5TE41110	.	-	ATLANTYS1	Gypsy	LTR	7393	long	153	medium	126936	pericentromeric	13255	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	11352525	11352305	-	transcript_id-"85fab65f-6bb3-476a-9753-70e587426ba7|3"
Chr5	11352731	11353959	AT5TE41115	.	+	ATHILA4	Gypsy	LTR	1228	short	250	high	134329	pericentromeric	12027	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	11353959	11356446	AT5TE41120	.	+	ATHILA4A	Gypsy	LTR	2487	medium	310	high	135557	pericentromeric	9540	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	11356452	11356896	AT5TE41125	.	+	ATHILA	Gypsy	LTR	444	short	198	medium	138050	pericentromeric	9090	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	11356896	11358042	AT5TE41130	.	-	ATHILA4B_LTR	Gypsy	LTR	1146	short	143	medium	138494	pericentromeric	7944	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	11358042	11365134	AT5TE41135	.	-	ATHILA4C	Gypsy	LTR	7092	long	206	high	139640	pericentromeric	852	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	11365177	11368139	AT5TE41140	.	-	ATHILA6B	Gypsy	LTR	2962	medium	134	medium	146775	pericentromeric	0	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	11366626	11368037	AT5TE41145	.	-	ATHILA	Gypsy	LTR	1411	short	198	medium	148224	pericentromeric	0	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	11368139	11372112	AT5TE41150	.	-	ATHILA6A	Gypsy	LTR	3973	medium	247	high	149737	pericentromeric	1498	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	11372112	11374027	AT5TE41155	.	-	ATHILA4C	Gypsy	LTR	1915	short	206	high	153710	pericentromeric	5471	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	11374028	11374051	AT5TE41160	.	-	ATHILA4A	Gypsy	LTR	23	tiny	310	high	155626	pericentromeric	6138	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	11374051	11374109	AT5TE41165	.	-	ATHILA4A	Gypsy	LTR	58	tiny	310	high	155649	pericentromeric	6080	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	11374294	11374455	AT5TE41170	.	+	ATHILA2	Gypsy	LTR	161	short	413	high	155892	pericentromeric	5734	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	11374455	11374925	AT5TE41175	.	+	ATHILA	Gypsy	LTR	470	short	198	medium	156053	pericentromeric	5264	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	11374925	11378024	AT5TE41180	.	+	ATHILA	Gypsy	LTR	3099	medium	198	medium	156523	pericentromeric	2165	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	11376914	11376369	-	transcript_id-"f3bcf47c-dc24-40af-8f87-4ef1acd6e287|20"
Chr5	11375646	11376870	AT5TE41185	.	-	ATHILA4	Gypsy	LTR	1224	short	250	high	157244	pericentromeric	3319	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	11376914,11376818	11376369,11376404	-,-	transcript_id-"f3bcf47c-dc24-40af-8f87-4ef1acd6e287|20",transcript_id-"a3694cc2-d13e-40d2-9869-8bc1ec2ebddc|3"
Chr5	11378024	11378375	AT5TE41190	.	+	ATHPOGON1	Pogo	DNA	351	short	174	medium	159622	pericentromeric	1814	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	11378375	11378478	AT5TE41195	.	+	ATREP11	Helitron	RC	103	short	841	high	159973	pericentromeric	1711	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	11378478	11379933	AT5TE41200	.	+	HELITRONY3	Helitron	RC	1455	short	1399	high	160076	pericentromeric	256	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	11382356	11382458	AT5TE41205	.	-	ATREP4	Helitron	RC	102	short	832	high	163954	pericentromeric	965	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	11382458	11382494	AT5TE41210	.	+	BRODYAGA2	MuDR	DNA	36	tiny	525	high	164056	pericentromeric	1067	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	11382494	11382520	AT5TE41215	.	-	BRODYAGA2	MuDR	DNA	26	tiny	525	high	164092	pericentromeric	1103	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	11382520	11385498	AT5TE41220	.	-	ARNOLDY2	MuDR	DNA	2978	medium	288	high	164118	pericentromeric	1129	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	11385498	11386011	AT5TE41225	.	-	HELITRONY3	Helitron	RC	513	short	1399	high	167096	pericentromeric	4107	no-CHH	no-CHH	.	.	.	.	.
Chr5	11386011	11387274	AT5TE41230	.	-	ATREP10D	Helitron	RC	1263	short	1295	high	167609	pericentromeric	4620	no-CHH	no-CHH	.	.	.	.	.
Chr5	11387286	11387649	AT5TE41235	.	+	ATDNA12T3_2	.	DNA	363	short	660	high	168884	pericentromeric	5895	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	11387663	11388075	AT5TE41240	.	+	ATCOPIA28	Copia	LTR	412	short	81	medium	169261	pericentromeric	6272	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr5	11388075	11390475	AT5TE41245	.	+	ROMANIAT5	Copia	LTR	2400	medium	49	low	169673	pericentromeric	6684	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	11390476	11409522	AT5TE41250	.	-	ATLANTYS3	Gypsy	LTR	19046	long	142	medium	172074	pericentromeric	9085	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	11396290	11396473	AT5TE41255	.	+	ATHILA2	Gypsy	LTR	183	short	413	high	177888	pericentromeric	14899	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	11396473	11396496	AT5TE41260	.	+	ATHILA2	Gypsy	LTR	23	tiny	413	high	178071	pericentromeric	15082	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	11396496	11404157	AT5TE41265	.	+	ATHILA2	Gypsy	LTR	7661	long	413	high	178094	pericentromeric	15105	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	11404157	11406110	AT5TE41270	.	+	ATHILA2	Gypsy	LTR	1953	short	413	high	185755	pericentromeric	22766	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	11406110	11407330	AT5TE41275	.	+	ATHILA2	Gypsy	LTR	1220	short	413	high	187708	pericentromeric	24719	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	11409522	11410109	AT5TE41280	.	-	ATLANTYS3	Gypsy	LTR	587	short	142	medium	191120	pericentromeric	28131	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	11410175	11412352	AT5TE41285	.	-	ATLANTYS3	Gypsy	LTR	2177	medium	142	medium	191773	pericentromeric	28784	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	11410216	11412272	AT5TE41290	.	-	ATLANTYS3	Gypsy	LTR	2056	medium	142	medium	191814	pericentromeric	28825	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	11412352	11413401	AT5TE41295	.	+	ROMANIAT5	Copia	LTR	1049	short	49	low	193950	pericentromeric	30961	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	11413401	11415810	AT5TE41300	.	+	ATHILA3	Gypsy	LTR	2409	medium	243	high	194999	pericentromeric	32010	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	11415810	11416056	AT5TE41305	.	+	ATCOPIA29	Copia	LTR	246	short	19	low	197408	pericentromeric	34419	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	11416084	11416670	AT5TE41310	.	+	HELITRON5	Helitron	RC	586	short	56	medium	197682	pericentromeric	34693	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	11417296	11418505	AT5TE41315	.	+	ATCOPIA28	Copia	LTR	1209	short	81	medium	198894	pericentromeric	35905	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	11416995	11418417	+	transcript_id-"93b6ce74-de61-4da7-b096-c9283319443e|3"
Chr5	11418505	11421081	AT5TE41320	.	+	ROMANIAT5	Copia	LTR	2576	medium	49	low	200103	pericentromeric	37114	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	11421081	11424608	AT5TE41325	.	+	ATHILA2	Gypsy	LTR	3527	medium	413	high	202679	pericentromeric	39690	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	11422843	11423160	AT5TE41330	.	+	ATHILA2	Gypsy	LTR	317	short	413	high	204441	pericentromeric	41452	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	11422871	11422950	AT5TE41335	.	+	ROMANIAT5	Copia	LTR	79	tiny	49	low	204469	pericentromeric	41480	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	11424608	11424673	AT5TE41340	.	+	ATHILA2	Gypsy	LTR	65	tiny	413	high	206206	pericentromeric	43217	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	11424673	11428610	AT5TE41345	.	+	ATHILA2	Gypsy	LTR	3937	medium	413	high	206271	pericentromeric	43282	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	11428610	11428656	AT5TE41350	.	-	ATHILA2	Gypsy	LTR	46	tiny	413	high	210208	pericentromeric	47219	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr5	11428656	11437942	AT5TE41355	.	+	ATLANTYS2	Gypsy	LTR	9286	long	179	medium	210254	pericentromeric	47265	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	11436831	11434074	-	transcript_id-"fd90baff-0177-4742-9b38-be5bdc26ecbc|3"
Chr5	11437944	11439269	AT5TE41360	.	+	ATHILA2	Gypsy	LTR	1325	short	413	high	219542	pericentromeric	56553	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	11437700	11438259	+	transcript_id-"35ca50bb-0be5-4cc9-81d3-94d266e495fb|18"
Chr5	11439269	11439289	AT5TE41365	.	+	ROMANIAT5	Copia	LTR	20	tiny	49	low	220867	pericentromeric	57878	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	11439289	11441295	AT5TE41370	.	+	ROMANIAT5	Copia	LTR	2006	medium	49	low	220887	pericentromeric	57898	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	11439431	11439474	AT5TE41375	.	+	ROMANIAT5	Copia	LTR	43	tiny	49	low	221029	pericentromeric	58040	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	11439475	11440674	AT5TE41380	.	-	ATHILA4D_LTR	Gypsy	LTR	1199	short	106	medium	221073	pericentromeric	58084	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	11440674	11440825	AT5TE41385	.	+	ROMANIAT5	Copia	LTR	151	short	49	low	222272	pericentromeric	59283	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	11441295	11441318	AT5TE41390	.	+	META1	Copia	LTR	23	tiny	138	medium	222893	pericentromeric	59904	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	11441660	11452121	AT5TE41395	.	+	HELITRON5	Helitron	RC	10461	long	56	medium	223258	pericentromeric	60269	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	11449722	11449748	AT5TE41400	.	+	HELITRON5	Helitron	RC	26	tiny	56	medium	231320	pericentromeric	68331	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	11452135	11452685	AT5TE41405	.	-	ATREP15	Helitron	RC	550	short	1003	high	233733	pericentromeric	70744	no-CHH	no-RdDM	.	.	.	.	.
Chr5	11453562	11453629	AT5TE41410	.	+	ATENSPM3	En-Spm	DNA	67	tiny	98	medium	235160	pericentromeric	72171	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	11453629	11454991	AT5TE41415	.	+	ATENSPM10	En-Spm	DNA	1362	short	81	medium	235227	pericentromeric	72238	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	11454991	11460346	AT5TE41420	.	+	ATENSPM10	En-Spm	DNA	5355	long	81	medium	236589	pericentromeric	73600	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	11460346	11462097	AT5TE41425	.	+	ATHILA2	Gypsy	LTR	1751	short	413	high	241944	pericentromeric	78955	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	11460971	11461107	+	transcript_id-"6c0d0d46-63c9-4885-926f-767711af800f|3"
Chr5	11462097	11462895	AT5TE41430	.	+	ATENSPM11	En-Spm	DNA	798	short	47	low	243695	pericentromeric	80706	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	11462895	11463191	AT5TE41435	.	+	ATENSPM10	En-Spm	DNA	296	short	81	medium	244493	pericentromeric	81504	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	11463191	11463822	AT5TE41440	.	+	ATENSPM11	En-Spm	DNA	631	short	47	low	244789	pericentromeric	81800	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	11463822	11464245	AT5TE41445	.	+	ATREP15	Helitron	RC	423	short	1003	high	245420	pericentromeric	82431	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	11464516	11464537	AT5TE41450	.	-	ATHILA7	Gypsy	LTR	21	tiny	134	medium	246114	pericentromeric	83125	no-CHH	no-CHH	.	.	.	.	.
Chr5	11464537	11468933	AT5TE41455	.	-	ATHILA6B	Gypsy	LTR	4396	medium	134	medium	246135	pericentromeric	83146	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	11469306	11471535	AT5TE41460	.	+	ATHILA6A	Gypsy	LTR	2229	medium	247	high	250904	pericentromeric	87915	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	11471535	11471595	AT5TE41465	.	+	ATHILA6A	Gypsy	LTR	60	tiny	247	high	253133	pericentromeric	90144	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	11471595	11472024	AT5TE41470	.	+	ATHILA4B_LTR	Gypsy	LTR	429	short	143	medium	253193	pericentromeric	90204	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	11472024	11472803	AT5TE41475	.	-	ATCOPIA41	Copia	LTR	779	short	39	low	253622	pericentromeric	90633	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	11472803	11473371	AT5TE41480	.	-	ATCOPIA42	Copia	LTR	568	short	35	low	254401	pericentromeric	91412	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	11473371	11477464	AT5TE41485	.	-	ATCOPIA41	Copia	LTR	4093	medium	39	low	254969	pericentromeric	91980	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	11477464	11477605	AT5TE41490	.	-	ENDOVIR1	Copia	LTR	141	short	15	low	259062	pericentromeric	96073	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	11477605	11477630	AT5TE41495	.	-	ATCOPIA41	Copia	LTR	25	tiny	39	low	259203	pericentromeric	96214	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	11477630	11479189	AT5TE41500	.	-	ATCOPIA41	Copia	LTR	1559	short	39	low	259228	pericentromeric	96239	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	11479189	11479683	AT5TE41505	.	+	ATHILA4B_LTR	Gypsy	LTR	494	short	143	medium	260787	pericentromeric	97798	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	11479683	11480162	AT5TE41510	.	+	ATHILA4	Gypsy	LTR	479	short	250	high	261281	pericentromeric	98292	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	11480162	11480184	AT5TE41515	.	+	ATHILA4B_LTR	Gypsy	LTR	22	tiny	143	medium	261760	pericentromeric	98771	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	11480184	11482462	AT5TE41520	.	+	ATHILA4	Gypsy	LTR	2278	medium	250	high	261782	pericentromeric	98793	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	11482519	11482595	AT5TE41525	.	+	ATHILA4A	Gypsy	LTR	76	tiny	310	high	264117	pericentromeric	101128	DCL3-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	11482595	11482997	AT5TE41530	.	+	ATHILA4A	Gypsy	LTR	402	short	310	high	264193	pericentromeric	101204	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	11484949	11485199	AT5TE41535	.	+	ATGP5	Gypsy	LTR	250	short	86	medium	266547	pericentromeric	103558	no-RdDM	no-CHH	.	.	.	.	.
Chr5	11485674	11485737	AT5TE41540	.	+	ATHILA4A	Gypsy	LTR	63	tiny	310	high	267272	pericentromeric	104283	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	11485737	11488423	AT5TE41545	.	+	ATHILA4A	Gypsy	LTR	2686	medium	310	high	267335	pericentromeric	104346	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	11488423	11489630	AT5TE41550	.	+	ATHILA4B_LTR	Gypsy	LTR	1207	short	143	medium	270021	pericentromeric	107032	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	11488092	11488907	+	transcript_id-"7d478afc-7932-4ba5-8162-f1d291b35921|29"
Chr5	11489632	11490402	AT5TE41555	.	+	ATHILA6A	Gypsy	LTR	770	short	247	high	271230	pericentromeric	108241	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	11490402	11490424	AT5TE41560	.	+	ATHILA2	Gypsy	LTR	22	tiny	413	high	272000	pericentromeric	109011	no-CHH	no-CHH	.	.	.	.	.
Chr5	11492063	11492202	AT5TE41565	.	+	ATENSPM9	En-Spm	DNA	139	short	97	medium	273661	pericentromeric	110672	no-RdDM	no-CHH	.	.	.	.	.
Chr5	11492353	11492461	AT5TE41570	.	+	ATENSPM6	En-Spm	DNA	108	short	151	medium	273951	pericentromeric	110962	no-CHH	no-CHH	.	.	.	.	.
Chr5	11493371	11493476	AT5TE41575	.	+	ATENSPM6	En-Spm	DNA	105	short	151	medium	274969	pericentromeric	111980	no-RdDM	no-CHH	.	.	.	.	.
Chr5	11494436	11494489	AT5TE41580	.	+	ATENSPM6	En-Spm	DNA	53	tiny	151	medium	276034	pericentromeric	113045	no-RdDM	no-CHH	.	.	.	.	.
Chr5	11495268	11495471	AT5TE41585	.	-	TAG1	HAT	DNA	203	short	28	low	276866	pericentromeric	113877	no-RdDM	no-CHH	.	.	.	.	.
Chr5	11497274	11497651	AT5TE41590	.	-	ATMU10	MuDR	DNA	377	short	87	medium	278872	pericentromeric	114547	no-RdDM	no-CHH	.	.	.	.	.
Chr5	11497939	11498309	AT5TE41595	.	-	ATMU5	MuDR	DNA	370	short	24	low	279537	pericentromeric	113889	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	11498483	11500014	AT5TE41600	.	-	ATENSPM1A	En-Spm	DNA	1531	short	77	medium	280081	pericentromeric	112184	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	11501428	11502306	AT5TE41605	.	-	ATMUN1	MuDR	DNA	878	short	107	medium	283026	pericentromeric	109892	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	11502306	11503488	AT5TE41610	.	-	META1	Copia	LTR	1182	short	138	medium	283904	pericentromeric	108710	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	11503488	11512862	AT5TE41615	.	-	ATLANTYS2	Gypsy	LTR	9374	long	179	medium	285086	pericentromeric	99336	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	11512862	11515293	AT5TE41620	.	-	META1	Copia	LTR	2431	medium	138	medium	294460	pericentromeric	96905	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	11515293	11517827	AT5TE41625	.	-	ATGP5	Gypsy	LTR	2534	medium	86	medium	296891	pericentromeric	94371	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	11517827	11517939	AT5TE41630	.	+	ATHILA4	Gypsy	LTR	112	short	250	high	299425	pericentromeric	94259	no-CHH	no-RdDM	.	.	.	.	.
Chr5	11517947	11520217	AT5TE41635	.	-	ATGP5	Gypsy	LTR	2270	medium	86	medium	299545	pericentromeric	91981	no-RdDM	no-CHH	.	.	.	.	.
Chr5	11520217	11520333	AT5TE41640	.	+	ATHILA4	Gypsy	LTR	116	short	250	high	301815	pericentromeric	91865	no-CHH	no-CHH	.	.	.	.	.
Chr5	11520341	11521094	AT5TE41645	.	-	ATGP5	Gypsy	LTR	753	short	86	medium	301939	pericentromeric	91104	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	11521094	11521304	AT5TE41650	.	-	ATGP2N	Gypsy	LTR	210	short	54	medium	302692	pericentromeric	90894	no-RdDM	no-CHH	.	.	.	.	.
Chr5	11521304	11521851	AT5TE41655	.	+	ATHILA4	Gypsy	LTR	547	short	250	high	302902	pericentromeric	90347	no-RdDM	no-CHH	.	.	.	.	.
Chr5	11521996	11524317	AT5TE41660	.	+	ATHILA4A	Gypsy	LTR	2321	medium	310	high	303594	pericentromeric	87881	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	11524317	11525034	AT5TE41665	.	+	ATHILA6A	Gypsy	LTR	717	short	247	high	305915	pericentromeric	87164	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	11526953	11527060	AT5TE41670	.	+	ATENSPM6	En-Spm	DNA	107	short	151	medium	308551	pericentromeric	85138	no-RdDM	no-CHH	.	.	.	.	.
Chr5	11528307	11528903	AT5TE41675	.	+	TAT1_ATH	Gypsy	LTR	596	short	87	medium	309905	pericentromeric	83295	no-RdDM	no-CHH	.	.	.	.	.
Chr5	11529397	11533237	AT5TE41680	.	+	ATLANTYS1	Gypsy	LTR	3840	medium	153	medium	310995	pericentromeric	78961	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	11531784	11531831	AT5TE41685	.	+	ATLANTYS2	Gypsy	LTR	47	tiny	179	medium	313382	pericentromeric	80367	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	11538958	11539078	AT5TE41710	.	+	ATENSPM6	En-Spm	DNA	120	short	151	medium	320556	pericentromeric	73120	no-CHH	no-CHH	.	.	.	.	.
Chr5	11539986	11540092	AT5TE41715	.	+	ATENSPM6	En-Spm	DNA	106	short	151	medium	321584	pericentromeric	72106	no-RdDM	no-CHH	.	.	.	.	.
Chr5	11540519	11541133	AT5TE41720	.	+	ATREP11	Helitron	RC	614	short	841	high	322117	pericentromeric	71065	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	11541887	11542028	AT5TE41725	.	-	TAG1	HAT	DNA	141	short	28	low	323485	pericentromeric	70170	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	11545465	11545551	AT5TE41735	.	+	ATENSPM6	En-Spm	DNA	86	tiny	151	medium	327063	pericentromeric	66647	no-RdDM	no-CHH	.	.	.	.	.
Chr5	11546517	11546624	AT5TE41740	.	+	ATENSPM6	En-Spm	DNA	107	short	151	medium	328115	pericentromeric	65574	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr5	11548430	11548614	AT5TE41745	.	-	ATMU10	MuDR	DNA	184	short	87	medium	330028	pericentromeric	63584	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	11549096	11549409	AT5TE41750	.	-	ATMU2	MuDR	DNA	313	short	64	medium	330694	pericentromeric	62789	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	11549409	11549464	AT5TE41755	.	-	ATMU2	MuDR	DNA	55	tiny	64	medium	331007	pericentromeric	62734	no-CHH	no-RdDM	.	.	.	.	.
Chr5	11549534	11549638	AT5TE41760	.	-	ATMU1	MuDR	DNA	104	short	59	medium	331132	pericentromeric	62560	RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr5	11549638	11549875	AT5TE41765	.	-	ATENSPM1A	En-Spm	DNA	237	short	77	medium	331236	pericentromeric	62323	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	11550067	11550437	AT5TE41770	.	+	ATENSPM11	En-Spm	DNA	370	short	47	low	331665	pericentromeric	61761	no-RdDM	no-CHH	ExpressedAndAnnotated	11550356,11550356	11551311,11551316	+,+	transcript_id-"bacdc7f2-0f41-42d7-a0f8-53a1c875ab1e|7",transcript_id-"59540876-70a5-4b0f-9382-b4aeaa0a3bee|62"
Chr5	11551236	11551607	AT5TE41775	.	+	ATENSPM10	En-Spm	DNA	371	short	81	medium	332834	pericentromeric	60591	no-RdDM	no-CHH	ExpressedAndAnnotated	11550356,11550356,11554532	11551311,11551316,11551438	+,+,-	transcript_id-"bacdc7f2-0f41-42d7-a0f8-53a1c875ab1e|7",transcript_id-"59540876-70a5-4b0f-9382-b4aeaa0a3bee|62",transcript_id-"6ac8bec8-7117-4de8-ab30-f96a4ec422d2|3"
Chr5	11552157	11552664	AT5TE41780	.	-	ATENSPM4	En-Spm	DNA	507	short	50	medium	333755	pericentromeric	59534	no-RdDM	no-CHH	ExpressedAndAnnotated	11554532	11551438	-	transcript_id-"6ac8bec8-7117-4de8-ab30-f96a4ec422d2|3"
Chr5	11554646	11554707	AT5TE41785	.	+	ATREP4	Helitron	RC	61	tiny	832	high	336244	pericentromeric	57491	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	11554707	11555595	AT5TE41790	.	-	ATMUN1	MuDR	DNA	888	short	107	medium	336305	pericentromeric	56603	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	11555595	11562653	AT5TE41795	.	+	ATENSPM9	En-Spm	DNA	7058	long	97	medium	337193	pericentromeric	49545	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	11558986,11558986,11561939	11562197,11562215,11562149	+,+,+	transcript_id-"ea274e87-bdd1-4c9e-a083-e591267dcea4|10",transcript_id-"0c2237ac-b5dc-4e18-bf93-29c4754a5507|7",transcript_id-"0b598b08-d33b-46a8-a485-3c6c9f786f90|3"
Chr5	11560454	11560511	AT5TE41800	.	+	ATENSPM9	En-Spm	DNA	57	tiny	97	medium	342052	pericentromeric	51687	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	11562653	11562698	AT5TE41805	.	+	ATENSPM9	En-Spm	DNA	45	tiny	97	medium	344251	pericentromeric	49500	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	11562827	11563119	AT5TE41810	.	+	ATHILA4A	Gypsy	LTR	292	short	310	high	344425	pericentromeric	49079	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	11563121	11566347	AT5TE41815	.	+	ATHILA4C	Gypsy	LTR	3226	medium	206	high	344719	pericentromeric	45851	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	11566347	11566661	AT5TE41820	.	-	ATHILA4C	Gypsy	LTR	314	short	206	high	347945	pericentromeric	45537	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	11566661	11567713	AT5TE41825	.	+	ATHILA4B_LTR	Gypsy	LTR	1052	short	143	medium	348259	pericentromeric	44485	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	11567734	11567761	AT5TE41830	.	+	ATHILA	Gypsy	LTR	27	tiny	198	medium	349332	pericentromeric	44437	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	11567761	11574948	AT5TE41835	.	+	ATHILA6A	Gypsy	LTR	7187	long	247	high	349359	pericentromeric	37250	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	11572367	11573345	AT5TE41840	.	+	ATHILA2	Gypsy	LTR	978	short	413	high	353965	pericentromeric	38853	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	11574948	11575798	AT5TE41845	.	+	TAT1_ATH	Gypsy	LTR	850	short	87	medium	356546	pericentromeric	36400	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	11575798	11575839	AT5TE41850	.	+	TAT1_ATH	Gypsy	LTR	41	tiny	87	medium	357396	pericentromeric	36359	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	11576257	11577102	AT5TE41855	.	-	ATLANTYS2	Gypsy	LTR	845	short	179	medium	357855	pericentromeric	35096	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	11577107	11577181	AT5TE41860	.	+	ATHILA6A	Gypsy	LTR	74	tiny	247	high	358705	pericentromeric	35017	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	11577182	11587287	AT5TE41865	.	+	ATHILA6A	Gypsy	LTR	10105	long	247	high	358780	pericentromeric	24911	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	11585317,11585433	11586308,11586315	+,+	transcript_id-"a0db7110-465f-48ad-aac0-73b5d4cdbef1|3",transcript_id-"4e973432-1c66-4149-b071-8b700c862afe|7"
Chr5	11587291	11592676	AT5TE41870	.	+	ATENSPM9	En-Spm	DNA	5385	long	97	medium	368889	pericentromeric	19522	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	11589093	11592158	+	transcript_id-"80c79e58-bced-49f8-a1f2-9a124988149e|8"
Chr5	11592676	11595217	AT5TE41875	.	-	ATLANTYS2	Gypsy	LTR	2541	medium	179	medium	374274	pericentromeric	16981	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	11595217	11595501	AT5TE41880	.	+	ATREP9	Helitron	RC	284	short	201	high	376815	pericentromeric	16697	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	11595666	11599316	AT5TE41885	.	+	ATCOPIA65	Copia	LTR	3650	medium	34	low	377264	pericentromeric	12882	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	11596627	11597809	AT5TE41890	.	-	ATHILA4C	Gypsy	LTR	1182	short	206	high	378225	pericentromeric	14389	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	11599318	11603524	AT5TE41895	.	+	ATHILA4	Gypsy	LTR	4206	medium	250	high	380916	pericentromeric	8674	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	11603524	11606051	AT5TE41900	.	+	ATHILA4A	Gypsy	LTR	2527	medium	310	high	385122	pericentromeric	6147	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	11606051	11608301	AT5TE41905	.	+	ATCOPIA40	Copia	LTR	2250	medium	6	low	387649	pericentromeric	3897	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	11608301	11608373	AT5TE41910	.	+	ATCOPIA65	Copia	LTR	72	tiny	34	low	389899	pericentromeric	3825	no-RdDM	no-CHH	.	.	.	.	.
Chr5	11608733	11608961	AT5TE41915	.	+	ATCOPIA54	Copia	LTR	228	short	18	low	390331	pericentromeric	3237	no-RdDM	no-CHH	.	.	.	.	.
Chr5	11608961	11610148	AT5TE41920	.	-	ATHILA4C	Gypsy	LTR	1187	short	206	high	390559	pericentromeric	2050	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	11610164	11610703	AT5TE41925	.	+	ATCOPIA64	Copia	LTR	539	short	13	low	391762	pericentromeric	1495	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	11610703	11610724	AT5TE41930	.	-	ARNOLDY2	MuDR	DNA	21	tiny	288	high	392301	pericentromeric	1474	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	11610724	11611695	AT5TE41935	.	-	ARNOLDY1	MuDR	DNA	971	short	237	high	392322	pericentromeric	503	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	11611695	11611720	AT5TE41940	.	+	ARNOLDY1	MuDR	DNA	25	tiny	237	high	393293	pericentromeric	478	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	11611720	11611775	AT5TE41945	.	+	ARNOLDY2	MuDR	DNA	55	tiny	288	high	393318	pericentromeric	423	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	11614730	11615004	AT5TE41955	.	+	RathE1_cons	.	RathE1_cons	274	short	213	high	396328	pericentromeric	340	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	11617322	11618245	AT5TE41960	.	-	ATREP10D	Helitron	RC	923	short	1295	high	398920	pericentromeric	396	no-CHH	no-CHH	.	.	.	.	.
Chr5	11617877	11618144	AT5TE41965	.	+	DT1	Mariner	DNA	267	short	123	medium	399475	pericentromeric	951	no-CHH	no-CHH	.	.	.	.	.
Chr5	11621549	11635002	AT5TE41975	.	-	ATCOPIA66	Copia	LTR	13453	long	20	low	403147	pericentromeric	326	no-RdDM	no-RdDM	ExpressedAndAnnotated	11625214,11631270	11623655,11630597	-,-	transcript_id-"469127d0-c231-4b6d-8064-2a8b19b892cf|3",transcript_id-"1070ce91-abeb-4f1f-b1ec-687993e0e0da|6"
Chr5	11623256	11631509	AT5TE41980	.	-	ATENSPM10	En-Spm	DNA	8253	long	81	medium	404854	pericentromeric	2033	no-RdDM	no-RdDM	ExpressedAndAnnotated	11625214,11631270	11623655,11630597	-,-	transcript_id-"469127d0-c231-4b6d-8064-2a8b19b892cf|3",transcript_id-"1070ce91-abeb-4f1f-b1ec-687993e0e0da|6"
Chr5	11636892	11638067	AT5TE41990	.	+	VANDAL4	MuDR	DNA	1175	short	102	medium	418490	pericentromeric	254	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	11638998	11639040	AT5TE41995	.	-	ATREP8	Helitron	RC	42	tiny	75	medium	420596	pericentromeric	2360	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	11639044	11640343	AT5TE42000	.	-	HELITRONY3	Helitron	RC	1299	short	1399	high	420642	pericentromeric	2406	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	11640343	11641246	AT5TE42005	.	-	ATREP8	Helitron	RC	903	short	75	medium	421941	pericentromeric	3705	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	11641246	11643340	AT5TE42010	.	-	ATENSPM6	En-Spm	DNA	2094	medium	151	medium	422844	pericentromeric	4608	no-RdDM	no-RdDM	ExpressedAndAnnotated	11642246	11641610	-	transcript_id-"094eb843-9ced-4706-9de4-9eec9e3693c8|3"
Chr5	11643340	11651273	AT5TE42015	.	-	ATHILA3	Gypsy	LTR	7933	long	243	high	424938	pericentromeric	6702	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr5	11651830	11652993	AT5TE42020	.	-	ATLANTYS2	Gypsy	LTR	1163	short	179	medium	433428	pericentromeric	15192	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	11652993	11656563	AT5TE42025	.	+	ATLANTYS2	Gypsy	LTR	3570	medium	179	medium	434591	pericentromeric	16355	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	11656594	11659196	AT5TE42030	.	-	ATLANTYS2	Gypsy	LTR	2602	medium	179	medium	438192	pericentromeric	19956	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	11656749,11657671	11656578,11659824	-,+	transcript_id-"bb07f317-f8e4-4235-a914-67aa13531d57|6",transcript_id-"c4166aeb-212e-47ba-bc1d-166856a17052|7"
Chr5	11659234	11659758	AT5TE42035	.	+	ATLANTYS2	Gypsy	LTR	524	short	179	medium	440832	pericentromeric	22596	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	11658832	11659879	+	transcript_id-"3875b2d4-8e08-4187-92eb-290dffb34f58|3"
Chr5	11659758	11659849	AT5TE42040	.	+	ATLANTYS2	Gypsy	LTR	91	tiny	179	medium	441356	pericentromeric	23120	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	11661905	11664630	AT5TE42045	.	-	ATGP5	Gypsy	LTR	2725	medium	86	medium	443503	pericentromeric	25267	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	11664630	11664670	AT5TE42050	.	-	ATGP5	Gypsy	LTR	40	tiny	86	medium	446228	pericentromeric	27992	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	11665793	11666073	AT5TE42055	.	-	ATHILA6A	Gypsy	LTR	280	short	247	high	447391	pericentromeric	29155	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	11666076	11666122	AT5TE42060	.	-	ATHILA2	Gypsy	LTR	46	tiny	413	high	447674	pericentromeric	29438	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	11666122	11667241	AT5TE42065	.	-	ATHILA2	Gypsy	LTR	1119	short	413	high	447720	pericentromeric	29484	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	11684429	11684655	AT5TE42120	.	+	ATHILA4A	Gypsy	LTR	226	short	310	high	466027	pericentromeric	47791	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	11684824	11685146	AT5TE42125	.	+	ATCOPIA94	Copia	LTR	322	short	39	low	466422	pericentromeric	48186	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	11685146	11685621	AT5TE42130	.	+	ATHILA4B_LTR	Gypsy	LTR	475	short	143	medium	466744	pericentromeric	48508	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	11686005	11697352	AT5TE42135	.	-	ATHILA6A	Gypsy	LTR	11347	long	247	high	467603	pericentromeric	49367	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	11687821,11689131	11686972,11686972	-,-	transcript_id-"246ca931-2ee7-4652-b9b6-c55d81645d7e|4",transcript_id-"01fc2d6d-9aed-4e3a-94b4-2c44e9893756|6"
Chr5	11697352	11697374	AT5TE42140	.	-	ATHILA3	Gypsy	LTR	22	tiny	243	high	478950	pericentromeric	60714	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	11697401	11700917	AT5TE42145	.	+	ATHILA	Gypsy	LTR	3516	medium	198	medium	478999	pericentromeric	60763	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	11700917	11701013	AT5TE42150	.	-	ATHILA3	Gypsy	LTR	96	tiny	243	high	482515	pericentromeric	64279	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	11701013	11701538	AT5TE42155	.	+	ATHILA	Gypsy	LTR	525	short	198	medium	482611	pericentromeric	64375	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	11711928	11723225	AT5TE42190	.	-	ATHILA6B	Gypsy	LTR	11297	long	134	medium	493526	pericentromeric	75290	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	11713099,11715052,11713099	11712892,11712892,11712954	-,-,-	transcript_id-"d2a85f65-3656-472d-a899-ed7c6c77f450|40",transcript_id-"49ef22a3-bef2-4fb0-890d-4fac437e9a4d|6",transcript_id-"9b257ee2-f492-4856-b008-5cbdf1cadfbc|5"
Chr5	11740193	11740404	AT5TE42250	.	+	ATENSPM9	En-Spm	DNA	211	short	97	medium	521791	pericentromeric	103555	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	11739111	11741542	+	transcript_id-"a18aa641-77d8-4486-aaf9-c6480fa45624|48"
Chr5	11740404	11741108	AT5TE42255	.	+	ATENSPM6	En-Spm	DNA	704	short	151	medium	522002	pericentromeric	103766	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	11739111	11741542	+	transcript_id-"a18aa641-77d8-4486-aaf9-c6480fa45624|48"
Chr5	11741588	11742798	AT5TE42260	.	-	ATHILA	Gypsy	LTR	1210	short	198	medium	523186	pericentromeric	104950	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	11742798	11753141	AT5TE42265	.	-	ATHILA	Gypsy	LTR	10343	long	198	medium	524396	pericentromeric	106160	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	11748759,11748305,11748319	11747965,11748001,11748037	-,-,-	transcript_id-"a267cedb-4a75-40c1-9b79-9d45b67683a7|98",transcript_id-"e12013ea-2553-4751-9557-a432ae3838ac|3",transcript_id-"9abe0ccd-7fd8-4a3a-8c3d-1b99ab078f20|4"
Chr5	11746180	11748144	AT5TE42270	.	+	ATGP2N	Gypsy	LTR	1964	short	54	medium	527778	pericentromeric	109542	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	11753141	11753593	AT5TE42280	.	-	ATHILA	Gypsy	LTR	452	short	198	medium	534739	pericentromeric	116503	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	11753800	11753871	AT5TE42285	.	+	ATENSPM9	En-Spm	DNA	71	tiny	97	medium	535398	pericentromeric	117162	no-RdDM	no-CHH	.	.	.	.	.
Chr5	11763871	11765766	AT5TE42320	.	-	ATHILA5	Gypsy	LTR	1895	short	131	medium	545469	pericentromeric	127233	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	11765566,11765333	11764858,11764864	-,-	transcript_id-"060e30f7-a360-4a3d-bb6f-847dc6ddf4ef|3",transcript_id-"462b11e2-f3dd-48c9-a10e-1f57a6ef16fc|6"
Chr5	11765942	11765967	AT5TE42325	.	-	ATHILA2	Gypsy	LTR	25	tiny	413	high	547540	pericentromeric	129304	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	11765967	11771880	AT5TE42330	.	-	ATHILA5	Gypsy	LTR	5913	long	131	medium	547565	pericentromeric	129329	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	11767956,11768373	11767832,11768096	-,-	transcript_id-"a76e14a2-ef13-46f4-8bdd-5efa3514c3b5|5",transcript_id-"b206ce5e-d84a-4e6b-9283-7dbdbb530e89|6"
Chr5	11771882	11776713	AT5TE42335	.	+	ATHILA2	Gypsy	LTR	4831	medium	413	high	553480	pericentromeric	135244	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	11776713	11776773	AT5TE42340	.	+	ATHILA6A	Gypsy	LTR	60	tiny	247	high	558311	pericentromeric	140075	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	11776773	11777536	AT5TE42345	.	+	ATHILA2	Gypsy	LTR	763	short	413	high	558371	pericentromeric	140135	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	11776894	11777204	AT5TE42350	.	+	ATHILA2	Gypsy	LTR	310	short	413	high	558492	pericentromeric	140256	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	11777536	11782793	AT5TE42355	.	+	ATHILA2	Gypsy	LTR	5257	long	413	high	559134	pericentromeric	140898	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	11780960	11781805	+	transcript_id-"697b169c-5341-47e5-873d-db8bece7b9c2|3"
Chr5	11782794	11785054	AT5TE42360	.	-	ATHILA5	Gypsy	LTR	2260	medium	131	medium	564392	pericentromeric	146156	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	11782970	11784600	AT5TE42365	.	-	ATHILA	Gypsy	LTR	1630	short	198	medium	564568	pericentromeric	146332	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	11785054	11785082	AT5TE42370	.	-	ATHILA6A	Gypsy	LTR	28	tiny	247	high	566652	pericentromeric	148416	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	11785082	11785116	AT5TE42375	.	-	ATHILA3	Gypsy	LTR	34	tiny	243	high	566680	pericentromeric	148444	RDR6-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	11785116	11786670	AT5TE42380	.	-	ATHILA5	Gypsy	LTR	1554	short	131	medium	566714	pericentromeric	148478	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	11796903	11808296	AT5TE42420	.	-	ATHILA2	Gypsy	LTR	11393	long	413	high	578501	pericentromeric	160265	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	11798705,11799945	11797844,11799426	-,-	transcript_id-"fb83487e-ae22-455e-912d-e05addb188fd|3",transcript_id-"4817d0b9-e21e-4174-995c-d9f419b72669|3"
Chr5	11808296	11808330	AT5TE42425	.	-	ATHILA2	Gypsy	LTR	34	tiny	413	high	589894	pericentromeric	171658	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	11808438	11808469	AT5TE42430	.	-	ATHILA6A	Gypsy	LTR	31	tiny	247	high	590036	pericentromeric	171800	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	11808469	11810264	AT5TE42435	.	-	ATHILA6A	Gypsy	LTR	1795	short	247	high	590067	pericentromeric	171831	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	11811331	11809528	-	transcript_id-"3528e1f5-ee9d-441c-9976-a183049e16e1|7"
Chr5	11810264	11821593	AT5TE42440	.	-	ATHILA6A	Gypsy	LTR	11329	long	247	high	591862	pericentromeric	173626	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	11811331,11812143	11809528,11811215	-,-	transcript_id-"3528e1f5-ee9d-441c-9976-a183049e16e1|7",transcript_id-"8d182984-311e-4a9f-bdfd-0f2915189689|7"
Chr5	11821593	11821687	AT5TE42445	.	-	ATHILA6A	Gypsy	LTR	94	tiny	247	high	603191	pericentromeric	184955	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	11830761	11851813	AT5TE42470	.	+	ATHILA6A	Gypsy	LTR	21052	long	247	high	612359	pericentromeric	194123	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	11839047,11839047,11848670	11839747,11841229,11849360	+,+,+	transcript_id-"9c0d5a7f-6798-493f-ada3-5ddcb69bc6de|28",transcript_id-"b279b0ef-f2b5-4ed4-b862-8b508a972d1a|4",transcript_id-"35c2076b-a084-4eaa-b732-a99ed631ad2e|40"
Chr5	11903700	11909743	AT5TE42660	.	-	ATHILA2	Gypsy	LTR	6043	long	413	high	685298	pericentromeric	167270	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	11909743	11912581	AT5TE42665	.	-	ATHILA6B	Gypsy	LTR	2838	medium	134	medium	691341	pericentromeric	164432	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	11912581	11915221	AT5TE42670	.	-	ATHILA2	Gypsy	LTR	2640	medium	413	high	694179	pericentromeric	161792	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	11915221	11915249	AT5TE42675	.	-	ATHILA2	Gypsy	LTR	28	tiny	413	high	696819	pericentromeric	161764	DCL3-RdDM	no-RdDM	.	.	.	.	.
Chr5	11916701	11928105	AT5TE42680	.	+	ATHILA6A	Gypsy	LTR	11404	long	247	high	698299	pericentromeric	148908	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	11935194	11945566	AT5TE42710	.	+	ATHILA6A	Gypsy	LTR	10372	long	247	high	716792	pericentromeric	131447	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	11944729	11945633	+	transcript_id-"24381bd7-c4bb-4b79-be56-d0998da3ab68|6"
Chr5	11945566	11945906	AT5TE42715	.	+	ATHILA6B	Gypsy	LTR	340	short	134	medium	727164	pericentromeric	131107	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	11957358	11957576	AT5TE42750	.	-	BRODYAGA1A	MuDR	DNA	218	short	586	high	738956	pericentromeric	119437	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	11962041	11962450	AT5TE42760	.	-	ATREP11	Helitron	RC	409	short	841	high	743639	pericentromeric	114563	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	11972612	11972760	AT5TE42800	.	+	ATENSPM1A	En-Spm	DNA	148	short	77	medium	754210	pericentromeric	104253	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	11972760	11974096	AT5TE42805	.	-	ATHILA4	Gypsy	LTR	1336	short	250	high	754358	pericentromeric	102917	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	11975591	11975660	AT5TE42810	.	-	ATDNA12T3_2	.	DNA	69	tiny	660	high	757189	pericentromeric	101353	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	11975912	11975953	AT5TE42815	.	+	ATHILA2	Gypsy	LTR	41	tiny	413	high	757510	pericentromeric	101060	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	11975953	11976204	AT5TE42820	.	+	ATHILA2	Gypsy	LTR	251	short	413	high	757551	pericentromeric	100809	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	11976204	11978373	AT5TE42825	.	+	ATHILA2	Gypsy	LTR	2169	medium	413	high	757802	pericentromeric	98640	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	11977708	11977764	AT5TE42830	.	+	ATHILA2	Gypsy	LTR	56	tiny	413	high	759306	pericentromeric	99249	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr5	11978373	11978634	AT5TE42835	.	+	ATHILA0_I	Gypsy	LTR	261	short	138	medium	759971	pericentromeric	98379	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	11978634	11980559	AT5TE42840	.	+	ATHILA4C	Gypsy	LTR	1925	short	206	high	760232	pericentromeric	96454	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	11980559	11980610	AT5TE42845	.	+	ATHILA3	Gypsy	LTR	51	tiny	243	high	762157	pericentromeric	96403	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr5	11980610	11983005	AT5TE42850	.	+	ATHILA0_I	Gypsy	LTR	2395	medium	138	medium	762208	pericentromeric	94008	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	11983005	11991317	AT5TE42855	.	+	ATHILA6B	Gypsy	LTR	8312	long	134	medium	764603	pericentromeric	85696	no-RdDM	no-RdDM	ExpressedAndAnnotated	11988176,11988176,11988730,11989427	11988770,11990352,11988983,11990362	+,+,+,+	transcript_id-"9c80da3d-3b19-4b2c-b7b1-14e91c4b88a9|25",transcript_id-"966366d9-4b71-457d-9e36-34046acf4188|4",transcript_id-"8f87dc0b-e75c-44b4-9bd1-c1c341e27a66|3",transcript_id-"e91b89ff-78e7-4841-8327-879adeb6f068|8"
Chr5	11991360	11994428	AT5TE42860	.	+	ATHILA3	Gypsy	LTR	3068	medium	243	high	772958	pericentromeric	82585	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	11991956,11992035	11992284,11992284	+,+	transcript_id-"fb48344e-07c4-4dd3-a4a6-d247862b94ad|4",transcript_id-"b9186f08-5eb2-48df-a038-0471fe18cf8f|6"
Chr5	11994429	12000095	AT5TE42865	.	+	ATHILA4C	Gypsy	LTR	5666	long	206	high	776027	pericentromeric	76918	no-RdDM	no-RdDM	ExpressedAndAnnotated	11996938,11998414	11998784,11998784	+,+	transcript_id-"4bf3c875-c2ea-4c15-91ad-672a1ffb2dc3|4",transcript_id-"11f6428c-a134-48ac-97b1-a4899997cb93|8"
Chr5	12000095	12000214	AT5TE42870	.	+	ATHILA4D_LTR	Gypsy	LTR	119	short	106	medium	781693	pericentromeric	76799	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	12000225	12000275	AT5TE42875	.	+	ATHILA4	Gypsy	LTR	50	tiny	250	high	781823	pericentromeric	76738	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12000275	12003978	AT5TE42880	.	+	ATHILA4C	Gypsy	LTR	3703	medium	206	high	781873	pericentromeric	73035	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr5	12003978	12004083	AT5TE42885	.	+	ATHILA4C	Gypsy	LTR	105	short	206	high	785576	pericentromeric	72930	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	12004083	12004267	AT5TE42890	.	+	ATHILA4A	Gypsy	LTR	184	short	310	high	785681	pericentromeric	72746	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	12004267	12007210	AT5TE42895	.	+	ATHILA4D_LTR	Gypsy	LTR	2943	medium	106	medium	785865	pericentromeric	69803	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	12007210	12018604	AT5TE42900	.	+	ATHILA2	Gypsy	LTR	11394	long	413	high	788808	pericentromeric	58409	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	12018604	12018663	AT5TE42905	.	+	ATHILA2	Gypsy	LTR	59	tiny	413	high	800202	pericentromeric	58350	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	12018663	12020726	AT5TE42910	.	+	ATHILA7	Gypsy	LTR	2063	medium	134	medium	800261	pericentromeric	56287	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	12020726	12020921	AT5TE42915	.	+	ATHILA6A	Gypsy	LTR	195	short	247	high	802324	pericentromeric	56092	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	12020977	12021340	AT5TE42920	.	+	ATHILA2	Gypsy	LTR	363	short	413	high	802575	pericentromeric	55673	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	12021340	12022590	AT5TE42925	.	+	ATHILA2	Gypsy	LTR	1250	short	413	high	802938	pericentromeric	54423	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	12022590	12022759	AT5TE42930	.	+	ATHILA6A	Gypsy	LTR	169	short	247	high	804188	pericentromeric	54254	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	12022759	12022825	AT5TE42935	.	+	ATHILA2	Gypsy	LTR	66	tiny	413	high	804357	pericentromeric	54188	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	12022851	12024877	AT5TE42940	.	+	ATHILA2	Gypsy	LTR	2026	medium	413	high	804449	pericentromeric	52136	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	12024877	12024906	AT5TE42945	.	+	ATHILA2	Gypsy	LTR	29	tiny	413	high	806475	pericentromeric	52107	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12025013	12025582	AT5TE42950	.	-	ATDNA12T3_2	.	DNA	569	short	660	high	806611	pericentromeric	51431	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	12029268	12029289	AT5TE42960	.	-	ATHILA2	Gypsy	LTR	21	tiny	413	high	810866	pericentromeric	47724	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	12029289	12035478	AT5TE42965	.	-	ATHILA2	Gypsy	LTR	6189	long	413	high	810887	pericentromeric	41535	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	12035478	12035556	AT5TE42970	.	-	ATHILA2	Gypsy	LTR	78	tiny	413	high	817076	pericentromeric	41457	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	12035556	12043305	AT5TE42975	.	-	ATHILA6A	Gypsy	LTR	7749	long	247	high	817154	pericentromeric	33708	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	12048551	12050505	AT5TE42985	.	-	ATHILA6B	Gypsy	LTR	1954	short	134	medium	830149	pericentromeric	26508	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	12063978	12064409	AT5TE43030	.	+	ATHILA6A	Gypsy	LTR	431	short	247	high	845576	pericentromeric	12604	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	12065555	12066419	AT5TE43035	.	-	ATGP7	Gypsy	LTR	864	short	47	low	847153	pericentromeric	10594	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12066419	12066471	AT5TE43040	.	-	ATGP7	Gypsy	LTR	52	tiny	47	low	848017	pericentromeric	10542	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	12066471	12069079	AT5TE43045	.	-	ATGP7	Gypsy	LTR	2608	medium	47	low	848069	pericentromeric	7934	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	12069091	12069607	AT5TE43050	.	+	ATHILA	Gypsy	LTR	516	short	198	medium	850689	pericentromeric	7406	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	12069607	12069819	AT5TE43055	.	+	ATHILA6B	Gypsy	LTR	212	short	134	medium	851205	pericentromeric	7194	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	12069819	12071485	AT5TE43060	.	-	ATHILA2	Gypsy	LTR	1666	short	413	high	851417	pericentromeric	5528	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	12071485	12071523	AT5TE43065	.	+	ATHILA2	Gypsy	LTR	38	tiny	413	high	853083	pericentromeric	5490	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	12071523	12072625	AT5TE43070	.	-	ATGP7	Gypsy	LTR	1102	short	47	low	853121	pericentromeric	4388	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12072629	12073934	AT5TE43075	.	-	ATHILA4C	Gypsy	LTR	1305	short	206	high	854227	pericentromeric	3079	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	12073934	12074638	AT5TE43080	.	+	ATHILA0_I	Gypsy	LTR	704	short	138	medium	855532	pericentromeric	2375	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	12075253	12075588	AT5TE43085	.	-	ATENSPM3	En-Spm	DNA	335	short	98	medium	856851	pericentromeric	1425	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr5	12076010	12076135	AT5TE43090	.	-	HELITRONY3	Helitron	RC	125	short	1399	high	857608	pericentromeric	878	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	12076631	12076769	AT5TE43095	.	-	BRODYAGA1	MuDR	DNA	139	short	251	high	858228	pericentromeric	244	.	.	.	.	.	.	.
Chr5	12084763	12084934	AT5TE43120	.	-	BRODYAGA2	MuDR	DNA	171	short	525	high	866361	pericentromeric	393	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	12088650	12089490	AT5TE43130	.	-	ATREP15	Helitron	RC	840	short	1003	high	870248	pericentromeric	81	no-CHH	no-CHH	.	.	.	.	.
Chr5	12089490	12090042	AT5TE43135	.	+	HELITRONY3	Helitron	RC	552	short	1399	high	871088	pericentromeric	921	no-CHH	no-CHH	.	.	.	.	.
Chr5	12090042	12090290	AT5TE43140	.	+	HELITRON4	Helitron	RC	248	short	199	medium	871640	pericentromeric	1473	no-CHH	no-CHH	.	.	.	.	.
Chr5	12090290	12092075	AT5TE43145	.	-	ATREP10B	Helitron	RC	1785	short	491	high	871888	pericentromeric	1721	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	12092075	12092442	AT5TE43150	.	-	HELITRONY3	Helitron	RC	367	short	1399	high	873673	pericentromeric	3506	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	12092442	12092491	AT5TE43155	.	-	ATREP15	Helitron	RC	49	tiny	1003	high	874040	pericentromeric	3873	no-CHH	no-CHH	.	.	.	.	.
Chr5	12092491	12092552	AT5TE43160	.	+	ATREP3	Helitron	RC	61	tiny	1439	high	874089	pericentromeric	3922	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	12092732	12093874	AT5TE43165	.	+	ATHILA4D_LTR	Gypsy	LTR	1142	short	106	medium	874330	pericentromeric	4163	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	12095470	12095514	AT5TE43170	.	+	ATHILA4	Gypsy	LTR	44	tiny	250	high	877068	pericentromeric	6901	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr5	12095514	12096709	AT5TE43175	.	+	ATHILA4B_LTR	Gypsy	LTR	1195	short	143	medium	877112	pericentromeric	6945	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	12096709	12096843	AT5TE43180	.	+	ATHILA4	Gypsy	LTR	134	short	250	high	878307	pericentromeric	8140	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	12099736	12112785	AT5TE43190	.	-	ATHILA2	Gypsy	LTR	13049	long	413	high	881334	pericentromeric	11167	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	12108195	12108235	AT5TE43195	.	-	ATHILA2	Gypsy	LTR	40	tiny	413	high	889793	pericentromeric	19626	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12108235	12110346	AT5TE43200	.	-	ATGP2N	Gypsy	LTR	2111	medium	54	medium	889833	pericentromeric	19666	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12112785	12113509	AT5TE43205	.	+	ATGP1	Gypsy	LTR	724	short	144	medium	894383	pericentromeric	24216	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12113509	12113530	AT5TE43210	.	+	ATGP1	Gypsy	LTR	21	tiny	144	medium	895107	pericentromeric	24940	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12113657	12120134	AT5TE43215	.	+	ATCOPIA27	Copia	LTR	6477	long	19	low	895255	pericentromeric	25088	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	12114018	12116108	+	transcript_id-"82045916-fed3-4457-8ec8-c6aa563f63f8|4"
Chr5	12120178	12120645	AT5TE43220	.	-	ATENSPM3	En-Spm	DNA	467	short	98	medium	901776	pericentromeric	31609	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	12120645	12121243	AT5TE43225	.	-	ATENSPM7	En-Spm	DNA	598	short	74	medium	902243	pericentromeric	32076	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	12121243	12121698	AT5TE43230	.	-	ATENSPM7	En-Spm	DNA	455	short	74	medium	902841	pericentromeric	32674	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	12121704	12124643	AT5TE43235	.	+	ATHILA	Gypsy	LTR	2939	medium	198	medium	903302	pericentromeric	33135	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr5	12124643	12128903	AT5TE43240	.	-	ATHILA2	Gypsy	LTR	4260	medium	413	high	906241	pericentromeric	36074	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	12128903	12128942	AT5TE43245	.	+	ATHILA7	Gypsy	LTR	39	tiny	134	medium	910501	pericentromeric	40334	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	12128943	12128970	AT5TE43250	.	-	ATHILA2	Gypsy	LTR	27	tiny	413	high	910541	pericentromeric	40374	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12128970	12138053	AT5TE43255	.	-	ATHILA2	Gypsy	LTR	9083	long	413	high	910568	pericentromeric	40401	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	12138053	12150833	AT5TE43260	.	-	ATHILA6A	Gypsy	LTR	12780	long	247	high	919651	pericentromeric	49484	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	12141091,12141277	12140280,12140280	-,-	transcript_id-"1be7b4e2-1787-49ee-b8fc-78ba29ee9664|4",transcript_id-"4ebe2ef6-9702-4bb5-8086-d5e5e9ce6f83|5"
Chr5	12150833	12151115	AT5TE43265	.	-	ATHILA6B	Gypsy	LTR	282	short	134	medium	932431	pericentromeric	62264	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	12151115	12151733	AT5TE43270	.	+	ATHILA6B	Gypsy	LTR	618	short	134	medium	932713	pericentromeric	62546	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	12151733	12160420	AT5TE43275	.	+	ATHILA6A	Gypsy	LTR	8687	long	247	high	933331	pericentromeric	61168	no-RdDM	no-RdDM	ExpressedAndAnnotated	12152578	12159507	+	transcript_id-"afad4889-316d-4976-9778-cbce7cff3b62|3"
Chr5	12151977	12152256	AT5TE43280	.	+	ATHILA6A	Gypsy	LTR	279	short	247	high	933575	pericentromeric	63408	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	12156437	12156891	AT5TE43290	.	+	ATHILA2	Gypsy	LTR	454	short	413	high	938035	pericentromeric	64697	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	12160420	12164392	AT5TE43300	.	+	ATHILA7	Gypsy	LTR	3972	medium	134	medium	942018	pericentromeric	57196	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12164393	12164439	AT5TE43305	.	+	ATHILA	Gypsy	LTR	47	tiny	198	medium	945990	pericentromeric	57149	.	.	.	.	.	.	.
Chr5	12164844	12165094	AT5TE43310	.	+	ATHILA6A	Gypsy	LTR	250	short	247	high	946442	pericentromeric	56494	DCL3-RdDM	no-RdDM	.	.	.	.	.
Chr5	12165094	12170358	AT5TE43315	.	+	ATHILA	Gypsy	LTR	5264	long	198	medium	946692	pericentromeric	51230	no-RdDM	no-RdDM	ExpressedAndAnnotated	12167978	12168210	+	transcript_id-"180047eb-0559-4a92-8d27-b0f2f8557708|3"
Chr5	12170372	12170405	AT5TE43320	.	-	ATENSPM3	En-Spm	DNA	33	tiny	98	medium	951970	pericentromeric	51183	no-CHH	no-RdDM	LowExpressed	.	.	.	.
Chr5	12170405	12176175	AT5TE43325	.	-	ATENSPM7	En-Spm	DNA	5770	long	74	medium	952003	pericentromeric	45413	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	12176175	12176324	AT5TE43330	.	-	ATENSPM7	En-Spm	DNA	149	short	74	medium	957773	pericentromeric	45264	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	12176324	12176352	AT5TE43335	.	-	ATENSPM7	En-Spm	DNA	28	tiny	74	medium	957922	pericentromeric	45236	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	12177749	12177833	AT5TE43340	.	-	ATENSPM3	En-Spm	DNA	84	tiny	98	medium	959347	pericentromeric	43755	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	12177850	12182967	AT5TE43345	.	+	ATGP1	Gypsy	LTR	5117	long	144	medium	959448	pericentromeric	38621	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	12184442	12188809	AT5TE43350	.	-	ATHILA8A	Gypsy	LTR	4367	medium	97	medium	966040	pericentromeric	32779	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	12188809	12188880	AT5TE43355	.	+	ATHILA8A	Gypsy	LTR	71	tiny	97	medium	970407	pericentromeric	32708	no-RdDM	no-CHH	.	.	.	.	.
Chr5	12188880	12194390	AT5TE43360	.	-	ATLANTYS2	Gypsy	LTR	5510	long	179	medium	970478	pericentromeric	27198	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	12194390	12194712	AT5TE43365	.	+	ATHILA8A	Gypsy	LTR	322	short	97	medium	975988	pericentromeric	26876	no-RdDM	no-CHH	ExpressedAndAnnotated	12194061,12194061	12194835,12194870	+,+	transcript_id-"a6b33767-9fd9-4ca7-b7aa-790e715c0ec2|4",transcript_id-"54457fdc-34eb-458b-b63a-4a2b85b21ee8|3"
Chr5	12195137	12195224	AT5TE43370	.	-	TAT1_ATH	Gypsy	LTR	87	tiny	87	medium	976735	pericentromeric	26364	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	12196839	12198861	AT5TE43375	.	+	ATGP2N	Gypsy	LTR	2022	medium	54	medium	978437	pericentromeric	22727	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	12199546	12199586	AT5TE43380	.	-	ATENSPM9	En-Spm	DNA	40	tiny	97	medium	981144	pericentromeric	22002	no-RdDM	no-CHH	.	.	.	.	.
Chr5	12199586	12207543	AT5TE43385	.	+	ATENSPM9	En-Spm	DNA	7957	long	97	medium	981184	pericentromeric	14045	no-RdDM	no-RdDM	ExpressedAndAnnotated	12204633	12207045	+	transcript_id-"5bab5942-11b8-4ae2-860e-a362f697f90e|10"
Chr5	12207543	12207611	AT5TE43390	.	+	ATENSPM9	En-Spm	DNA	68	tiny	97	medium	989141	pericentromeric	13977	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12210172	12210573	AT5TE43395	.	-	ATLANTYS1	Gypsy	LTR	401	short	153	medium	991770	pericentromeric	11015	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	12210584	12214142	AT5TE43400	.	-	ATHILA2	Gypsy	LTR	3558	medium	413	high	992182	pericentromeric	7446	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	12215115	12218696	AT5TE43405	.	+	ATLANTYS1	Gypsy	LTR	3581	medium	153	medium	996713	pericentromeric	2892	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	12216097	12216255	AT5TE43410	.	+	ATLANTYS1	Gypsy	LTR	158	short	153	medium	997695	pericentromeric	5333	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	12218764	12218799	AT5TE43415	.	+	ATLANTYS1	Gypsy	LTR	35	tiny	153	medium	1000362	pericentromeric	2789	no-RdDM	no-CHH	.	.	.	.	.
Chr5	12218799	12219927	AT5TE43420	.	+	ATLANTYS2	Gypsy	LTR	1128	short	179	medium	1000397	pericentromeric	1661	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	12224640	12224715	AT5TE43430	.	+	TAT1_ATH	Gypsy	LTR	75	tiny	87	medium	1006238	pericentromeric	318	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	12225102	12227283	AT5TE43435	.	-	ATHILA6A	Gypsy	LTR	2181	medium	247	high	1006700	pericentromeric	780	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	12227388	12224953	-	transcript_id-"fb6f530e-79fd-497c-b4aa-dc950978ec0b|6"
Chr5	12227283	12227303	AT5TE43440	.	-	ATHILA6A	Gypsy	LTR	20	tiny	247	high	1008881	pericentromeric	2961	no-CHH	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	12227303	12227327	AT5TE43445	.	-	ATHILA6A	Gypsy	LTR	24	tiny	247	high	1008901	pericentromeric	2981	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	12227327	12238088	AT5TE43450	.	-	ATHILA6B	Gypsy	LTR	10761	long	134	medium	1008925	pericentromeric	0	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	12232041	12232442	+	transcript_id-"779bbbdc-c202-43ca-8be8-9528c562053d|3"
Chr5	12229753	12230633	AT5TE43455	.	+	ATHILA4D_LTR	Gypsy	LTR	880	short	106	medium	1011351	pericentromeric	5125	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	12232288	12235445	AT5TE43460	.	+	ATCOPIA43	Copia	LTR	3157	medium	29	low	1013886	pericentromeric	313	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	12234673	12234708	AT5TE43465	.	+	ATCOPIA41	Copia	LTR	35	tiny	39	low	1016271	pericentromeric	1050	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	12235445	12235529	AT5TE43470	.	+	ENDOVIR1	Copia	LTR	84	tiny	15	low	1017043	pericentromeric	229	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	12235541	12235583	AT5TE43475	.	+	ATCOPIA43	Copia	LTR	42	tiny	29	low	1017139	pericentromeric	175	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12236233	12236386	AT5TE43480	.	+	ATCOPIA43	Copia	LTR	153	short	29	low	1017831	pericentromeric	343	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr5	12238100	12239751	AT5TE43485	.	+	ATHILA4	Gypsy	LTR	1651	short	250	high	1019698	pericentromeric	2210	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr5	12239762	12242374	AT5TE43490	.	+	ATHILA4A	Gypsy	LTR	2612	medium	310	high	1021360	pericentromeric	3872	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	12242374	12242400	AT5TE43495	.	+	ATHILA4B_LTR	Gypsy	LTR	26	tiny	143	medium	1023972	pericentromeric	6484	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12242506	12242921	AT5TE43500	.	-	ATLANTYS2	Gypsy	LTR	415	short	179	medium	1024104	pericentromeric	6616	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12242921	12243056	AT5TE43505	.	-	ATLANTYS1	Gypsy	LTR	135	short	153	medium	1024519	pericentromeric	7031	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12243456	12244068	AT5TE43510	.	-	TAT1_ATH	Gypsy	LTR	612	short	87	medium	1025054	pericentromeric	7566	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12244998	12245019	AT5TE43515	.	+	ATLANTYS2	Gypsy	LTR	21	tiny	179	medium	1026596	pericentromeric	9108	no-RdDM	no-CHH	.	.	.	.	.
Chr5	12245019	12252307	AT5TE43520	.	+	ATLANTYS2	Gypsy	LTR	7288	long	179	medium	1026617	pericentromeric	9129	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	12252307	12252332	AT5TE43525	.	+	ATLANTYS2	Gypsy	LTR	25	tiny	179	medium	1033905	pericentromeric	10922	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	12252412	12252531	AT5TE43530	.	+	ATGP10	Gypsy	LTR	119	short	165	medium	1034010	pericentromeric	10723	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	12252532	12254698	AT5TE43535	.	+	ATHILA8A	Gypsy	LTR	2166	medium	97	medium	1034130	pericentromeric	8556	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	12253692	12253876	+	transcript_id-"7992137f-e54f-4995-a2df-c86132ae1260|6"
Chr5	12254698	12257795	AT5TE43540	.	-	ATHILA8A	Gypsy	LTR	3097	medium	97	medium	1036296	pericentromeric	5459	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	12257795	12259171	AT5TE43545	.	-	ATGP10	Gypsy	LTR	1376	short	165	medium	1039393	pericentromeric	4083	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	12259894	12260476	AT5TE43550	.	+	ATHILA4D_LTR	Gypsy	LTR	582	short	106	medium	1041492	pericentromeric	2778	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	12260476	12261309	AT5TE43555	.	-	ATREP10B	Helitron	RC	833	short	491	high	1042074	pericentromeric	1945	no-CHH	no-CHH	.	.	.	.	.
Chr5	12261309	12261731	AT5TE43560	.	-	ATREP10D	Helitron	RC	422	short	1295	high	1042907	pericentromeric	1523	no-CHH	no-CHH	.	.	.	.	.
Chr5	12262251	12263152	AT5TE43565	.	-	ATDNA2T9B	MuDR	DNA	901	short	26	low	1043849	pericentromeric	102	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	12266635	12268092	AT5TE43575	.	+	ATLINE2	L1	LINE	1457	short	138	medium	1048233	pericentromeric	1594	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr5	12269310	12272892	AT5TE43580	.	+	ATIS112A	Harbinger	DNA	3582	medium	173	medium	1050908	pericentromeric	4269	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	12269405,12270193,12271249	12271206,12270887,12272777	+,+,+	transcript_id-"04023fc4-d414-472c-b156-ac226f548e33|3",transcript_id-"3e5f18a8-49ca-4daf-b9a1-352b6091b990|3",transcript_id-"036ab505-8c08-4960-b1de-db57690471d4|4"
Chr5	12274053	12274143	AT5TE43585	.	-	ATDNA2T9C	MuDR	DNA	90	tiny	242	high	1055651	pericentromeric	3452	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	12274143	12274515	AT5TE43590	.	-	ATDNA2T9C	MuDR	DNA	372	short	242	high	1055741	pericentromeric	3080	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	12277100	12277222	AT5TE43595	.	-	BRODYAGA2	MuDR	DNA	122	short	525	high	1058698	pericentromeric	373	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	12277242	12277479	AT5TE43600	.	-	BRODYAGA2	MuDR	DNA	237	short	525	high	1058840	pericentromeric	116	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	12277800	12278660	AT5TE43605	.	+	ATREP11	Helitron	RC	860	short	841	high	1059398	pericentromeric	0	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12278661	12278853	AT5TE43610	.	+	ATMUNX1	MuDR	DNA	192	short	155	medium	1060259	pericentromeric	583	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	12278853	12282183	AT5TE43615	.	-	ATHILA3	Gypsy	LTR	3330	medium	243	high	1060451	pericentromeric	775	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	12280566,12280266,12281757,12281742,12281736,12281743	12279745,12279752,12280937,12281170,12281572,12281618	-,-,-,-,-,-	transcript_id-"2584fd40-0045-4544-b346-9b7b143bd38e|3",transcript_id-"d032582e-b588-4aa2-b7c5-405e7e093692|9",transcript_id-"2e0219a6-fa07-45d3-87db-f2fd40fa0f77|4",transcript_id-"a9006dbb-dff7-4c2e-a3a0-c3db6891aab3|9",transcript_id-"23d28820-e0b5-4b5c-952c-166d404106c3|3",transcript_id-"6b8139cb-3130-485e-a4e4-78e58f57c262|3"
Chr5	12282183	12282236	AT5TE43620	.	-	ATHILA5	Gypsy	LTR	53	tiny	131	medium	1063781	pericentromeric	4105	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	12282236	12283801	AT5TE43625	.	-	ATHILA5	Gypsy	LTR	1565	short	131	medium	1063834	pericentromeric	4158	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	12283801	12283860	AT5TE43630	.	-	ATHILA5	Gypsy	LTR	59	tiny	131	medium	1065399	pericentromeric	5723	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	12284200	12284432	AT5TE43635	.	-	ATHILA0_I	Gypsy	LTR	232	short	138	medium	1065798	pericentromeric	6122	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	12284432	12285827	AT5TE43640	.	-	ATHILA3	Gypsy	LTR	1395	short	243	high	1066030	pericentromeric	6354	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	12285827	12285897	AT5TE43645	.	-	ATHILA6A	Gypsy	LTR	70	tiny	247	high	1067425	pericentromeric	7749	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12286640	12287065	AT5TE43650	.	-	ATHILA4B_LTR	Gypsy	LTR	425	short	143	medium	1068238	pericentromeric	8562	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	12287065	12287787	AT5TE43655	.	-	ATHILA4A	Gypsy	LTR	722	short	310	high	1068663	pericentromeric	8987	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	12287787	12289068	AT5TE43660	.	-	ATHILA4	Gypsy	LTR	1281	short	250	high	1069385	pericentromeric	9709	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12289068	12297594	AT5TE43665	.	+	ATHILA6A	Gypsy	LTR	8526	long	247	high	1070666	pericentromeric	10990	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	12294433,12295669	12296566,12296574	+,+	transcript_id-"e0d59d86-cad3-425c-b7a6-76fea6242315|3",transcript_id-"aa5ae285-14fc-437e-a393-2128dd47c81c|13"
Chr5	12297594	12300585	AT5TE43670	.	-	ATHILA4	Gypsy	LTR	2991	medium	250	high	1079192	pericentromeric	19516	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12300585	12300611	AT5TE43675	.	-	ATHILA4	Gypsy	LTR	26	tiny	250	high	1082183	pericentromeric	22507	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	12300611	12302014	AT5TE43680	.	-	VANDAL4	MuDR	DNA	1403	short	102	medium	1082209	pericentromeric	22533	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12302029	12302820	AT5TE43685	.	-	TAG3N1	HAT	DNA	791	short	97	medium	1083627	pericentromeric	23951	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	12302897	12304690	AT5TE43690	.	-	ATREP10D	Helitron	RC	1793	short	1295	high	1084495	pericentromeric	24819	no-CHH	no-CHH	.	.	.	.	.
Chr5	12304690	12305505	AT5TE43695	.	-	TAG3N1	HAT	DNA	815	short	97	medium	1086288	pericentromeric	26612	no-CHH	no-CHH	.	.	.	.	.
Chr5	12307341	12307809	AT5TE43700	.	-	ATREP11	Helitron	RC	468	short	841	high	1088939	pericentromeric	29263	no-CHH	no-CHH	.	.	.	.	.
Chr5	12307821	12315770	AT5TE43705	.	-	HELITRON5	Helitron	RC	7949	long	56	medium	1089419	pericentromeric	29743	no-RdDM	no-RdDM	ExpressedAndAnnotated	12308460,12308460,12308460,12308460,12308460,12308460,12308460,12308460	12309472,12309552,12309608,12310257,12310257,12310313,12310319,12310905	+,+,+,+,+,+,+,+	transcript_id-"ea1e5227-d0e5-4c87-b5b5-a481695bb43c|50",transcript_id-"d7c20e42-6a38-4f0d-a576-8594162dd105|10",transcript_id-"1faba589-e510-4954-b064-e2e34d0a3778|5",transcript_id-"e9e5a23a-1537-4950-a995-14a83e5b68b5|4",transcript_id-"f97cd86b-1b35-4bc8-b4aa-88fb3e42e4de|28",transcript_id-"02cad358-1bf9-4d1f-893f-5b83a81f08fb|3",transcript_id-"fd0c2383-6bc6-4422-99e5-4efeae936958|54",transcript_id-"8e1e3e32-a688-4ff2-a352-85f3c6e98ad2|4"
Chr5	12315770	12315816	AT5TE43710	.	-	HELITRON1	Helitron	RC	46	tiny	130	medium	1097368	pericentromeric	37692	no-CHH	no-RdDM	LowExpressed	.	.	.	.
Chr5	12315817	12316090	AT5TE43715	.	-	ATREP11A	Helitron	RC	273	short	95	medium	1097415	pericentromeric	37739	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	12316096	12317523	AT5TE43720	.	-	ATHILA4B_LTR	Gypsy	LTR	1427	short	143	medium	1097694	pericentromeric	38018	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12317523	12318289	AT5TE43725	.	-	ATHILA4A	Gypsy	LTR	766	short	310	high	1099121	pericentromeric	39445	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	12318441	12321622	AT5TE43730	.	-	ATHILA4	Gypsy	LTR	3181	medium	250	high	1100039	pericentromeric	40363	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12321622	12321646	AT5TE43735	.	-	ATHILA4	Gypsy	LTR	24	tiny	250	high	1103220	pericentromeric	43544	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12321646	12321719	AT5TE43740	.	-	ATREP11A	Helitron	RC	73	tiny	95	medium	1103244	pericentromeric	43568	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	12321719	12321854	AT5TE43745	.	-	HELITRON5	Helitron	RC	135	short	56	medium	1103317	pericentromeric	43641	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12321864	12323074	AT5TE43750	.	-	ATHILA4B_LTR	Gypsy	LTR	1210	short	143	medium	1103462	pericentromeric	43786	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	12323074	12323105	AT5TE43755	.	-	ATHILA4A	Gypsy	LTR	31	tiny	310	high	1104672	pericentromeric	44996	PolIV-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr5	12325997	12330014	AT5TE43765	.	+	ATHILA	Gypsy	LTR	4017	medium	198	medium	1107595	pericentromeric	47919	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr5	12332824	12332853	AT5TE43775	.	-	ATCOPIA9	Copia	LTR	29	tiny	9	low	1114422	pericentromeric	54746	no-CHH	no-CHH	.	.	.	.	.
Chr5	12332853	12332945	AT5TE43780	.	-	ATCOPIA51	Copia	LTR	92	tiny	14	low	1114451	pericentromeric	54775	no-RdDM	no-CHH	.	.	.	.	.
Chr5	12332945	12334530	AT5TE43785	.	-	ATCOPIA25	Copia	LTR	1585	short	9	low	1114543	pericentromeric	54867	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	12334531	12334603	AT5TE43790	.	-	ATRE1	Copia	LTR	73	tiny	22	low	1116128	pericentromeric	56452	.	.	.	.	.	.	.
Chr5	12334627	12334797	AT5TE43795	.	-	ATCOPIA4	Copia	LTR	170	short	11	low	1116225	pericentromeric	56549	no-RdDM	no-CHH	.	.	.	.	.
Chr5	12334797	12335494	AT5TE43800	.	-	ATCOPIA8A	Copia	LTR	697	short	12	low	1116395	pericentromeric	56719	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	12335500	12338654	AT5TE43805	.	-	ATHILA8B	Gypsy	LTR	3154	medium	78	medium	1117098	pericentromeric	57422	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	12336637	12335257	-	transcript_id-"2fd69b62-1c89-41d1-8c71-ebfc5fb2ef8e|12"
Chr5	12338654	12338676	AT5TE43810	.	-	ATHILA2	Gypsy	LTR	22	tiny	413	high	1120252	pericentromeric	60576	no-CHH	DCL3-RdDM	LowExpressed	.	.	.	.
Chr5	12338676	12342939	AT5TE43815	.	-	ATHILA2	Gypsy	LTR	4263	medium	413	high	1120274	pericentromeric	60598	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	12342939	12347386	AT5TE43820	.	-	ATHILA0_I	Gypsy	LTR	4447	medium	138	medium	1124537	pericentromeric	64861	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12347386	12350574	AT5TE43825	.	-	ATHILA2	Gypsy	LTR	3188	medium	413	high	1128984	pericentromeric	69308	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	12350574	12350857	AT5TE43830	.	-	ATHILA8B	Gypsy	LTR	283	short	78	medium	1132172	pericentromeric	72496	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	12350860	12353073	AT5TE43835	.	+	ATHILA	Gypsy	LTR	2213	medium	198	medium	1132458	pericentromeric	72782	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	12353073	12353216	AT5TE43840	.	+	ATHILA	Gypsy	LTR	143	short	198	medium	1134671	pericentromeric	74995	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12353216	12353421	AT5TE43845	.	-	ATENSPM7	En-Spm	DNA	205	short	74	medium	1134814	pericentromeric	75138	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	12353421	12353642	AT5TE43850	.	-	ATENSPM3	En-Spm	DNA	221	short	98	medium	1135019	pericentromeric	75343	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12353642	12361416	AT5TE43855	.	-	ATENSPM3	En-Spm	DNA	7774	long	98	medium	1135240	pericentromeric	75564	no-RdDM	no-RdDM	ExpressedAndAnnotated	12353877	12353675	-	transcript_id-"ae194a65-9e28-4f8b-b9c7-1e52379cc172|4"
Chr5	12355104	12355186	AT5TE43860	.	-	ATENSPM3	En-Spm	DNA	82	tiny	98	medium	1136702	pericentromeric	77026	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	12360619	12360686	AT5TE43880	.	-	ATENSPM7	En-Spm	DNA	67	tiny	74	medium	1142217	pericentromeric	82541	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	12361416	12363541	AT5TE43885	.	+	ATHILA6B	Gypsy	LTR	2125	medium	134	medium	1143014	pericentromeric	83338	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12363541	12363962	AT5TE43890	.	+	ATHILA	Gypsy	LTR	421	short	198	medium	1145139	pericentromeric	85463	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12363962	12367495	AT5TE43895	.	+	ATHILA	Gypsy	LTR	3533	medium	198	medium	1145560	pericentromeric	85884	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	12366923	12366960	AT5TE43900	.	+	ATHILA6A	Gypsy	LTR	37	tiny	247	high	1148521	pericentromeric	88845	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr5	12367495	12370253	AT5TE43905	.	-	ATHILA8B	Gypsy	LTR	2758	medium	78	medium	1149093	pericentromeric	89417	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	12370253	12370846	AT5TE43910	.	-	ATGP10	Gypsy	LTR	593	short	165	medium	1151851	pericentromeric	92175	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	12372925	12370473	-	transcript_id-"a6042fee-2271-4889-b924-e5e48f5c4a5f|19"
Chr5	12371306	12373510	AT5TE43915	.	-	ATHILA8B	Gypsy	LTR	2204	medium	78	medium	1152904	pericentromeric	91546	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	12372925,12372925,12372925	12370473,12370555,12371190	-,-,-	transcript_id-"a6042fee-2271-4889-b924-e5e48f5c4a5f|19",transcript_id-"80602f2b-3e71-4bff-9f1b-cd42161a333f|4",transcript_id-"645516e6-535e-4192-8817-b125cc1ac723|64"
Chr5	12374158	12374471	AT5TE43920	.	+	ATGP10	Gypsy	LTR	313	short	165	medium	1155756	pericentromeric	90585	no-RdDM	no-CHH	.	.	.	.	.
Chr5	12374824	12374854	AT5TE43925	.	+	ATGP10	Gypsy	LTR	30	tiny	165	medium	1156422	pericentromeric	90202	no-RdDM	no-CHH	.	.	.	.	.
Chr5	12374854	12375270	AT5TE43930	.	+	ATGP10	Gypsy	LTR	416	short	165	medium	1156452	pericentromeric	89786	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12375270	12380790	AT5TE43935	.	+	ATGP10	Gypsy	LTR	5520	long	165	medium	1156868	pericentromeric	84266	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12381356	12389681	AT5TE43940	.	+	ATENSPM6	En-Spm	DNA	8325	long	151	medium	1162954	pericentromeric	75375	no-RdDM	no-RdDM	ExpressedAndAnnotated	12386175	12388996	+	transcript_id-"6ec37376-1abb-4286-9f93-89e4a5c2d28d|12"
Chr5	12391144	12391699	AT5TE43945	.	-	HELITRON4	Helitron	RC	555	short	199	medium	1172742	pericentromeric	73357	no-CHH	no-CHH	.	.	.	.	.
Chr5	12391785	12393114	AT5TE43950	.	+	Unassigned	.	Unassigned	1329	short	.	low	1173383	pericentromeric	71942	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	12393167	12393194	AT5TE43955	.	-	ATREP4	Helitron	RC	27	tiny	832	high	1174765	pericentromeric	71862	no-CHH	no-RdDM	LowExpressed	.	.	.	.
Chr5	12393194	12393837	AT5TE43960	.	-	ATREP3	Helitron	RC	643	short	1439	high	1174792	pericentromeric	71219	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	12393837	12394406	AT5TE43965	.	+	ATHILA4	Gypsy	LTR	569	short	250	high	1175435	pericentromeric	70650	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12394406	12395588	AT5TE43970	.	-	ATREP10D	Helitron	RC	1182	short	1295	high	1176004	pericentromeric	69468	no-CHH	no-CHH	.	.	.	.	.
Chr5	12396083	12403525	AT5TE43975	.	+	ATHILA6A	Gypsy	LTR	7442	long	247	high	1177681	pericentromeric	61531	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	12403539	12415223	AT5TE43980	.	+	ATHILA6A	Gypsy	LTR	11684	long	247	high	1185137	pericentromeric	49833	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	12410011	12410863	+	transcript_id-"281c2286-2070-4ab3-862a-837044b2ce54|3"
Chr5	12411816	12412796	AT5TE43985	.	+	ATHILA6A	Gypsy	LTR	980	short	247	high	1193414	pericentromeric	52260	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	12415225	12417563	AT5TE43990	.	+	ATHILA2	Gypsy	LTR	2338	medium	413	high	1196823	pericentromeric	47493	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	12417563	12417833	AT5TE43995	.	+	ATHILA6A	Gypsy	LTR	270	short	247	high	1199161	pericentromeric	47223	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	12417837	12417894	AT5TE44000	.	+	ATHILA0_I	Gypsy	LTR	57	tiny	138	medium	1199435	pericentromeric	47162	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	12418033	12418234	AT5TE44005	.	+	HELITRONY3	Helitron	RC	201	short	1399	high	1199631	pericentromeric	46822	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12418814	12418937	AT5TE44010	.	-	ATREP10D	Helitron	RC	123	short	1295	high	1200412	pericentromeric	46119	no-CHH	no-RdDM	.	.	.	.	.
Chr5	12418937	12418973	AT5TE44015	.	-	ATREP4	Helitron	RC	36	tiny	832	high	1200535	pericentromeric	46083	no-CHH	no-CHH	.	.	.	.	.
Chr5	12418973	12420797	AT5TE44020	.	+	ATREP3	Helitron	RC	1824	short	1439	high	1200571	pericentromeric	44259	no-CHH	no-RdDM	.	.	.	.	.
Chr5	12420797	12420989	AT5TE44025	.	-	ATREP10D	Helitron	RC	192	short	1295	high	1202395	pericentromeric	44067	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	12420989	12421626	AT5TE44030	.	-	ATLINE1A	L1	LINE	637	short	289	high	1202587	pericentromeric	43430	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	12421626	12422259	AT5TE44035	.	+	ATREP10D	Helitron	RC	633	short	1295	high	1203224	pericentromeric	42797	no-RdDM	no-CHH	.	.	.	.	.
Chr5	12423500	12424190	AT5TE44040	.	-	ATCOPIA31	Copia	LTR	690	short	8	low	1205098	pericentromeric	40866	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12424463	12425020	AT5TE44045	.	-	ATCOPIA49	Copia	LTR	557	short	34	low	1206061	pericentromeric	40036	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12425020	12425113	AT5TE44050	.	-	ATCOPIA54	Copia	LTR	93	tiny	18	low	1206618	pericentromeric	39943	no-RdDM	no-CHH	.	.	.	.	.
Chr5	12427465	12432153	AT5TE44055	.	+	ATHILA2	Gypsy	LTR	4688	medium	413	high	1209063	pericentromeric	32903	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	12432153	12432723	AT5TE44060	.	+	ATHILA6B	Gypsy	LTR	570	short	134	medium	1213751	pericentromeric	32333	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	12432723	12432746	AT5TE44065	.	+	ATHILA6A	Gypsy	LTR	23	tiny	247	high	1214321	pericentromeric	32310	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	12432746	12436388	AT5TE44070	.	+	ATHILA2	Gypsy	LTR	3642	medium	413	high	1214344	pericentromeric	28668	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	12436388	12436466	AT5TE44075	.	+	ATHILA2	Gypsy	LTR	78	tiny	413	high	1217986	pericentromeric	28590	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	12436780	12437154	AT5TE44080	.	-	ATHILA4A	Gypsy	LTR	374	short	310	high	1218378	pericentromeric	27902	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	12437154	12437176	AT5TE44085	.	-	ATHILA4C	Gypsy	LTR	22	tiny	206	high	1218752	pericentromeric	27880	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12437322	12437453	AT5TE44090	.	+	ATGP10	Gypsy	LTR	131	short	165	medium	1218920	pericentromeric	27603	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12437666	12439271	AT5TE44095	.	-	ATHAT1	HAT	DNA	1605	short	105	medium	1219264	pericentromeric	25785	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12439468	12439656	AT5TE44100	.	+	ATTIRX1B	.	DNA	188	short	44	low	1221066	pericentromeric	25400	no-CHH	no-RdDM	.	.	.	.	.
Chr5	12442360	12442576	AT5TE44110	.	-	ATHAT1	HAT	DNA	216	short	105	medium	1223958	pericentromeric	22480	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	12442658	12442691	AT5TE44115	.	+	ATHILA4A	Gypsy	LTR	33	tiny	310	high	1224256	pericentromeric	22365	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	12442691	12443642	AT5TE44120	.	+	ATHILA4	Gypsy	LTR	951	short	250	high	1224289	pericentromeric	21414	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	12443642	12443684	AT5TE44125	.	+	ATHILA4D_LTR	Gypsy	LTR	42	tiny	106	medium	1225240	pericentromeric	21372	DCL3-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	12443910	12445299	AT5TE44130	.	-	ATHILA8A	Gypsy	LTR	1389	short	97	medium	1225508	pericentromeric	19757	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	12444944,12444942,12445102	12444559,12444761,12445660	-,-,+	transcript_id-"b721ba42-ceb3-4d8d-a1ca-4aecb50cbe69|25",transcript_id-"1917fdbb-a093-491c-8c28-9fe6f67c1f3f|145",transcript_id-"94b5eca4-89ef-4891-93c5-2584722dea21|3"
Chr5	12445377	12445833	AT5TE44135	.	+	ATGP10	Gypsy	LTR	456	short	165	medium	1226975	pericentromeric	19223	no-RdDM	no-RdDM	ExpressedAndAnnotated	12445102	12445660	+	transcript_id-"94b5eca4-89ef-4891-93c5-2584722dea21|3"
Chr5	12445901	12448110	AT5TE44140	.	+	ROMANIAT5	Copia	LTR	2209	medium	49	low	1227499	pericentromeric	16946	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12447161	12447506	AT5TE44145	.	+	ROMANIAT5	Copia	LTR	345	short	49	low	1228759	pericentromeric	17550	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12448320	12448420	AT5TE44150	.	+	ATREP10D	Helitron	RC	100	short	1295	high	1229918	pericentromeric	16636	no-RdDM	no-CHH	.	.	.	.	.
Chr5	12448420	12448883	AT5TE44155	.	+	HELITRONY3	Helitron	RC	463	short	1399	high	1230018	pericentromeric	16173	no-CHH	no-CHH	.	.	.	.	.
Chr5	12448883	12449916	AT5TE44160	.	-	ATHATN10	HAT	DNA	1033	short	48	low	1230481	pericentromeric	15140	no-CHH	no-CHH	.	.	.	.	.
Chr5	12449916	12450222	AT5TE44165	.	-	ATHATN10	HAT	DNA	306	short	48	low	1231514	pericentromeric	14834	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	12450385	12451071	AT5TE44170	.	-	ATREP5	Helitron	RC	686	short	624	high	1231983	pericentromeric	13985	no-CHH	no-CHH	.	.	.	.	.
Chr5	12451071	12451572	AT5TE44175	.	+	HELITRONY1D	Helitron	RC	501	short	756	high	1232669	pericentromeric	13484	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12451572	12453370	AT5TE44180	.	-	HELITRON3	Helitron	RC	1798	short	53	medium	1233170	pericentromeric	11686	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12453370	12461667	AT5TE44185	.	-	ATHILA4C	Gypsy	LTR	8297	long	206	high	1234968	pericentromeric	3389	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	12457185	12455649	-	transcript_id-"1c7111ae-f7f8-42f6-a9a8-9cfdd5ff3433|4"
Chr5	12463265	12463779	AT5TE44190	.	-	ATENSPM9	En-Spm	DNA	514	short	97	medium	1244863	pericentromeric	1277	no-RdDM	no-RdDM	ExpressedAndAnnotated	12463435	12462285	-	transcript_id-"02000e29-9f77-49e5-affa-d45b406fc25a|27"
Chr5	12466484	12468918	AT5TE44200	.	-	VANDAL6	MuDR	DNA	2434	medium	89	medium	1248082	pericentromeric	771	no-RdDM	no-RdDM	ExpressedAndAnnotated	12466752,12468733	12469004,12468979	+,+	transcript_id-"d60c9dda-2584-4122-a697-aeecf9481043|4",transcript_id-"a816accb-342f-47d2-880f-c0fb7d12df64|8"
Chr5	12468918	12472568	AT5TE44205	.	-	ATHILA2	Gypsy	LTR	3650	medium	413	high	1250516	pericentromeric	3205	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	12472568	12472639	AT5TE44210	.	-	ATHILA2	Gypsy	LTR	71	tiny	413	high	1254166	pericentromeric	6855	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	12472639	12472686	AT5TE44215	.	-	ATHILA6B	Gypsy	LTR	47	tiny	134	medium	1254237	pericentromeric	6926	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12472686	12473153	AT5TE44220	.	-	ATHILA2	Gypsy	LTR	467	short	413	high	1254284	pericentromeric	6973	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12473153	12476441	AT5TE44225	.	-	ATHILA6A	Gypsy	LTR	3288	medium	247	high	1254751	pericentromeric	7440	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	12476441	12476721	AT5TE44230	.	-	ATHILA2	Gypsy	LTR	280	short	413	high	1258039	pericentromeric	10728	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	12476730	12482338	AT5TE44235	.	-	VANDAL6	MuDR	DNA	5608	long	89	medium	1258328	pericentromeric	11017	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	12478474,12482182	12477529,12479078	-,-	transcript_id-"bcf2a7b6-669d-4ebd-9cc7-7898cb4d783c|60",transcript_id-"73530922-ac17-4152-b8d6-42dce00863c1|3"
Chr5	12483635	12485669	AT5TE44240	.	+	ATENSPM6	En-Spm	DNA	2034	medium	151	medium	1265233	pericentromeric	17922	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12485669	12485759	AT5TE44245	.	+	ATENSPM2	En-Spm	DNA	90	tiny	114	medium	1267267	pericentromeric	19956	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12485804	12487589	AT5TE44250	.	+	ATENSPM2	En-Spm	DNA	1785	short	114	medium	1267402	pericentromeric	20091	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12487946	12490430	AT5TE44255	.	-	ATHILA4C	Gypsy	LTR	2484	medium	206	high	1269544	pericentromeric	22233	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	12490444	12490486	AT5TE44260	.	-	ATHILA4B_LTR	Gypsy	LTR	42	tiny	143	medium	1272042	pericentromeric	24731	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	12490507	12491694	AT5TE44265	.	-	HELITRON3	Helitron	RC	1187	short	53	medium	1272105	pericentromeric	24794	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	12492334	12492414	AT5TE44270	.	-	VANDALNX2	MuDR	DNA	80	tiny	37	low	1273932	pericentromeric	26621	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12492414	12492666	AT5TE44275	.	-	ATDNA2T9C	MuDR	DNA	252	short	242	high	1274012	pericentromeric	26701	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	12494365	12494830	AT5TE44280	.	-	VANDAL3	MuDR	DNA	465	short	177	medium	1275963	pericentromeric	28652	no-RdDM	no-CHH	ExpressedAndAnnotated	12492659	12495040	+	transcript_id-"6b21cf3c-3a24-4f87-be1f-c061c6c2a158|3"
Chr5	12495620	12495773	AT5TE44285	.	+	HELITRONY1E	Helitron	RC	153	short	447	high	1277218	pericentromeric	29907	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	12495773	12496270	AT5TE44290	.	+	ATREP15	Helitron	RC	497	short	1003	high	1277371	pericentromeric	30060	no-CHH	no-RdDM	.	.	.	.	.
Chr5	12496270	12496313	AT5TE44295	.	+	HELITRONY1E	Helitron	RC	43	tiny	447	high	1277868	pericentromeric	30557	no-RdDM	no-CHH	.	.	.	.	.
Chr5	12496313	12497750	AT5TE44300	.	-	ATREP4	Helitron	RC	1437	short	832	high	1277911	pericentromeric	30600	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	12497750	12498099	AT5TE44305	.	-	ATREP11	Helitron	RC	349	short	841	high	1279348	pericentromeric	32037	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	12500667	12508922	AT5TE44310	.	+	ATGP1	Gypsy	LTR	8255	long	144	medium	1282265	pericentromeric	34954	no-RdDM	no-RdDM	ExpressedAndAnnotated	12507886,12507886,12508195	12508817,12508822,12508901	+,+,+	transcript_id-"58c0a85d-c405-40a3-a683-50cbe54b0849|7",transcript_id-"ed482b2f-adc4-49f9-9c30-a0d210719a5e|3",transcript_id-"40220488-a835-41d8-a2fe-8a3420fd3611|4"
Chr5	12508922	12508989	AT5TE44315	.	-	ATREP3	Helitron	RC	67	tiny	1439	high	1290520	pericentromeric	40290	no-CHH	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	12508989	12510097	AT5TE44320	.	-	ATREP3	Helitron	RC	1108	short	1439	high	1290587	pericentromeric	39182	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	12510097	12510174	AT5TE44325	.	-	ATREP11	Helitron	RC	77	tiny	841	high	1291695	pericentromeric	39105	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	12510843	12511158	AT5TE44330	.	-	ATENSPM10	En-Spm	DNA	315	short	81	medium	1292441	pericentromeric	38121	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	12512645	12512766	AT5TE44335	.	-	ATENSPM11	En-Spm	DNA	121	short	47	low	1294243	pericentromeric	36513	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12514393	12514690	AT5TE44340	.	+	VANDAL4	MuDR	DNA	297	short	102	medium	1295991	pericentromeric	34589	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12514690	12515807	AT5TE44345	.	+	VANDAL1	MuDR	DNA	1117	short	80	medium	1296288	pericentromeric	33472	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12517258	12517296	AT5TE44350	.	-	ATHILA2	Gypsy	LTR	38	tiny	413	high	1298856	pericentromeric	31983	no-RdDM	no-CHH	.	.	.	.	.
Chr5	12517296	12522612	AT5TE44355	.	-	ATHILA2	Gypsy	LTR	5316	long	413	high	1298894	pericentromeric	26667	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	12522612	12522638	AT5TE44360	.	-	ATHILA2	Gypsy	LTR	26	tiny	413	high	1304210	pericentromeric	26641	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	12523026	12523239	AT5TE44365	.	-	ATHILA2	Gypsy	LTR	213	short	413	high	1304624	pericentromeric	26040	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	12523239	12531276	AT5TE44370	.	-	ATHILA2	Gypsy	LTR	8037	long	413	high	1304837	pericentromeric	18003	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	12531276	12531330	AT5TE44375	.	-	ATHILA6A	Gypsy	LTR	54	tiny	247	high	1312874	pericentromeric	17949	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	12532645	12533260	AT5TE44380	.	-	Unassigned	.	Unassigned	615	short	.	low	1314243	pericentromeric	16019	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	12534955	12535816	AT5TE44385	.	+	VANDAL18	MuDR	DNA	861	short	14	low	1316553	pericentromeric	13463	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	12536007	12536170	AT5TE44390	.	+	ATMU8	MuDR	DNA	163	short	9	low	1317605	pericentromeric	13109	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	12536849	12536957	AT5TE44395	.	-	ARNOLDY2	MuDR	DNA	108	short	288	high	1318447	pericentromeric	12322	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	12536959	12538094	AT5TE44400	.	+	HELITRONY3	Helitron	RC	1135	short	1399	high	1318557	pericentromeric	11185	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	12538094	12538670	AT5TE44405	.	-	ATDNA2T9B	MuDR	DNA	576	short	26	low	1319692	pericentromeric	10609	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	12539060	12539774	AT5TE44410	.	+	ATDNA2T9A	MuDR	DNA	714	short	48	low	1320658	pericentromeric	9505	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12540558	12544395	AT5TE44415	.	+	HARBINGER	Harbinger	DNA	3837	medium	90	medium	1322156	pericentromeric	4884	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	12540809,12540814,12540837,12540843,12540845	12544242,12542164,12544172,12544242,12544172	+,+,+,+,+	transcript_id-"165a5b7a-bd3e-43ed-bbfc-5ab1b2662d5d|3",transcript_id-"ce79c03c-c223-4ec6-8259-1730d4e1e568|11",transcript_id-"2e5c8a91-a86a-4fd0-8e72-490a7953c3ce|4",transcript_id-"c06f3e9f-ac8b-4808-947a-6869e7a19aea|3",transcript_id-"cd904ca7-6860-4369-9a67-1f29657d11d6|4"
Chr5	12543457	12543479	AT5TE44420	.	+	HARBINGER	Harbinger	DNA	22	tiny	90	medium	1325055	pericentromeric	5800	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr5	12544622	12544804	AT5TE44425	.	+	ATLINE1A	L1	LINE	182	short	289	high	1326220	pericentromeric	4475	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	12546794	12547099	AT5TE44430	.	-	ATREP10D	Helitron	RC	305	short	1295	high	1328392	pericentromeric	2180	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	12547099	12547598	AT5TE44435	.	+	ATREP13	Helitron	RC	499	short	106	medium	1328697	pericentromeric	1681	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	12547598	12548470	AT5TE44440	.	+	ATREP7	Helitron	RC	872	short	164	medium	1329196	pericentromeric	809	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	12548471	12548918	AT5TE44445	.	-	HELITRONY3	Helitron	RC	447	short	1399	high	1330069	pericentromeric	361	no-CHH	no-CHH	.	.	.	.	.
Chr5	12548918	12549152	AT5TE44450	.	-	HELITRONY1A	Helitron	RC	234	short	271	high	1330516	pericentromeric	127	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	12553824	12554015	AT5TE44460	.	-	HELITRONY1E	Helitron	RC	191	short	447	high	1335422	pericentromeric	1519	no-CHH	no-CHH	.	.	.	.	.
Chr5	12554015	12554223	AT5TE44465	.	-	BRODYAGA1A	MuDR	DNA	208	short	586	high	1335613	pericentromeric	1710	no-CHH	no-CHH	.	.	.	.	.
Chr5	12554223	12555368	AT5TE44470	.	+	ATREP11	Helitron	RC	1145	short	841	high	1335821	pericentromeric	1918	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	12557465	12558199	AT5TE44475	.	+	ATREP15	Helitron	RC	734	short	1003	high	1339063	pericentromeric	239	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	12559383	12559664	AT5TE44480	.	+	HELITRONY3	Helitron	RC	281	short	1399	high	1340981	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	12559664	12559968	AT5TE44485	.	-	DT1	Mariner	DNA	304	short	123	medium	1341262	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	12559968	12560063	AT5TE44490	.	+	ATREP10B	Helitron	RC	95	tiny	491	high	1341566	pericentromeric	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	12566805	12566842	AT5TE44520	.	-	ATREP10B	Helitron	RC	37	tiny	491	high	1348403	pericentromeric	1130	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	12566842	12568021	AT5TE44525	.	+	ATREP15	Helitron	RC	1179	short	1003	high	1348440	pericentromeric	1167	no-CHH	no-RdDM	.	.	.	.	.
Chr5	12568311	12569138	AT5TE44530	.	-	ATREP10D	Helitron	RC	827	short	1295	high	1349909	pericentromeric	2636	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	12569138	12569604	AT5TE44535	.	+	META1	Copia	LTR	466	short	138	medium	1350736	pericentromeric	3463	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	12569604	12570941	AT5TE44540	.	+	ATCOPIA30	Copia	LTR	1337	short	33	low	1351202	pericentromeric	3929	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12570941	12571017	AT5TE44545	.	+	ATCOPIA28	Copia	LTR	76	tiny	81	medium	1352539	pericentromeric	5266	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	12571980	12572592	AT5TE44550	.	+	TAT1_ATH	Gypsy	LTR	612	short	87	medium	1353578	pericentromeric	6305	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	12573006	12577144	AT5TE44555	.	+	ATLANTYS1	Gypsy	LTR	4138	medium	153	medium	1354604	pericentromeric	7331	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	12582315	12582402	AT5TE44565	.	+	TAT1_ATH	Gypsy	LTR	87	tiny	87	medium	1363913	pericentromeric	6547	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	12582823	12583708	AT5TE44570	.	+	ATCOPIA28	Copia	LTR	885	short	81	medium	1364421	pericentromeric	5241	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	12583708	12584148	AT5TE44575	.	+	HELITRONY1D	Helitron	RC	440	short	756	high	1365306	pericentromeric	4801	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	12585233	12585859	AT5TE44580	.	-	ARNOLDY2	MuDR	DNA	626	short	288	high	1366831	pericentromeric	3090	no-CHH	no-CHH	.	.	.	.	.
Chr5	12586011	12586623	AT5TE44585	.	-	ATREP3	Helitron	RC	612	short	1439	high	1367609	pericentromeric	2326	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	12587875	12588246	AT5TE44590	.	+	ATMUNX1	MuDR	DNA	372	short	155	medium	1369472	pericentromeric	703	.	.	.	.	.	.	.
Chr5	12588889	12590626	AT5TE44595	.	-	ATDNA1T9A	MuDR	DNA	1737	short	36	low	1370487	pericentromeric	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	12593011	12593351	AT5TE44600	.	-	ATLINE1A	L1	LINE	340	short	289	high	1374609	pericentromeric	115	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	12593351	12593958	AT5TE44605	.	-	ATREP9	Helitron	RC	607	short	201	high	1374949	pericentromeric	455	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	12593958	12594046	AT5TE44610	.	+	BRODYAGA1A	MuDR	DNA	88	tiny	586	high	1375556	pericentromeric	427	no-CHH	no-CHH	.	.	.	.	.
Chr5	12594046	12594286	AT5TE44615	.	-	HELITRON2	Helitron	RC	240	short	194	medium	1375644	pericentromeric	187	no-CHH	no-CHH	.	.	.	.	.
Chr5	12595915	12596511	AT5TE44620	.	-	HELITRONY1D	Helitron	RC	596	short	756	high	1377513	pericentromeric	128	no-CHH	no-CHH	.	.	.	.	.
Chr5	12596025	12596441	AT5TE44625	.	+	ATDNA2T9C	MuDR	DNA	416	short	242	high	1377623	pericentromeric	238	no-CHH	no-CHH	.	.	.	.	.
Chr5	12600348	12600674	AT5TE44635	.	-	ATCOPIA55	Copia	LTR	326	short	9	low	1381946	pericentromeric	677	no-CHH	no-CHH	.	.	.	.	.
Chr5	12601005	12601727	AT5TE44640	.	+	ATLINE1_1	L1	LINE	722	short	61	medium	1382603	pericentromeric	1045	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	12602106	12602464	AT5TE44645	.	-	ATLINE1A	L1	LINE	358	short	289	high	1383704	pericentromeric	308	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	12603056	12603382	AT5TE44650	.	+	BRODYAGA1A	MuDR	DNA	326	short	586	high	1384654	pericentromeric	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	12605657	12605981	AT5TE44655	.	+	HELITRONY1E	Helitron	RC	324	short	447	high	1387255	pericentromeric	987	no-CHH	no-CHH	.	.	.	.	.
Chr5	12605981	12607059	AT5TE44660	.	-	ATREP10D	Helitron	RC	1078	short	1295	high	1387579	pericentromeric	1311	no-CHH	no-CHH	.	.	.	.	.
Chr5	12607059	12607203	AT5TE44665	.	+	HELITRONY1D	Helitron	RC	144	short	756	high	1388657	pericentromeric	2389	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12607212	12608479	AT5TE44670	.	-	ATLANTYS2	Gypsy	LTR	1267	short	179	medium	1388810	pericentromeric	2542	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	12608877	12610155	AT5TE44675	.	+	ATHILA4D_LTR	Gypsy	LTR	1278	short	106	medium	1390475	pericentromeric	4207	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	12610155	12610191	AT5TE44680	.	+	ATHILA4C	Gypsy	LTR	36	tiny	206	high	1391753	pericentromeric	5485	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	12610311	12610630	AT5TE44685	.	+	ATHILA4	Gypsy	LTR	319	short	250	high	1391909	pericentromeric	5641	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	12610762	12610573	-	transcript_id-"01dbfc97-dc97-4358-98d4-3c3bf8ae1a70|4"
Chr5	12610790	12612002	AT5TE44690	.	-	ATHILA6A	Gypsy	LTR	1212	short	247	high	1392388	pericentromeric	6120	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	12611851,12611854	12610575,12611739	-,-	transcript_id-"5c5fc88f-a687-4ca9-865e-df4ce5301bc5|7",transcript_id-"2123557d-90fd-44c1-9ed4-bd247b0f788a|4"
Chr5	12612002	12612033	AT5TE44695	.	+	ATHILA4C	Gypsy	LTR	31	tiny	206	high	1393600	pericentromeric	7332	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	12612033	12615235	AT5TE44700	.	+	ATHILA4C	Gypsy	LTR	3202	medium	206	high	1393631	pericentromeric	7363	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	12612050,12612121	12613532,12613623	+,+	transcript_id-"f4593b39-4ea3-4366-a40c-7d81ffb78101|6",transcript_id-"736ade6e-8fae-49c1-b779-7f02dda0ed2e|11"
Chr5	12613442	12613976	AT5TE44705	.	-	ATLANTYS1	Gypsy	LTR	534	short	153	medium	1395040	pericentromeric	8772	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	12615235	12622961	AT5TE44710	.	+	ATHILA4A	Gypsy	LTR	7726	long	310	high	1396833	pericentromeric	10565	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	12619812	12618900	-	transcript_id-"0ae439cd-0433-4877-9d8d-e1ba101995fc|6"
Chr5	12616213	12621590	AT5TE44715	.	+	ATCOPIA88	Copia	LTR	5377	long	8	low	1397811	pericentromeric	11543	no-CHH	no-CHH	ExpressedAndAnnotated	12619812	12618900	-	transcript_id-"0ae439cd-0433-4877-9d8d-e1ba101995fc|6"
Chr5	12622961	12623053	AT5TE44720	.	+	ATHILA4D_LTR	Gypsy	LTR	92	tiny	106	medium	1404559	pericentromeric	18291	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	12623079	12623691	AT5TE44725	.	-	ATHILA3	Gypsy	LTR	612	short	243	high	1404677	pericentromeric	18409	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	12623691	12628771	AT5TE44730	.	-	ATHILA3	Gypsy	LTR	5080	long	243	high	1405289	pericentromeric	19021	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	12628444,12628444,12628458	12626390,12627869,12628269	-,-,-	transcript_id-"7000aadc-8c2b-434f-b14f-b1f67dead195|39",transcript_id-"90d04114-784d-4935-83c2-522feb0b1604|86",transcript_id-"93ad2baf-71f0-4fe1-a5ad-4d99ec5f998a|5"
Chr5	12625496	12626910	AT5TE44735	.	-	ATHILA3	Gypsy	LTR	1414	short	243	high	1407094	pericentromeric	20826	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	12628822	12630499	AT5TE44740	.	-	ATHILA5	Gypsy	LTR	1677	short	131	medium	1410420	pericentromeric	24152	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	12630952	12631091	AT5TE44745	.	-	ATHILA0_I	Gypsy	LTR	139	short	138	medium	1412550	pericentromeric	25338	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	12631167	12636386	AT5TE44750	.	-	ATHILA3	Gypsy	LTR	5219	long	243	high	1412765	pericentromeric	20043	no-RdDM	no-RdDM	ExpressedAndAnnotated	12638046	12635650	-	transcript_id-"25c879fa-174e-4180-8a43-b08e3565cad4|4"
Chr5	12636386	12638279	AT5TE44755	.	+	VANDAL3	MuDR	DNA	1893	short	177	medium	1417984	pericentromeric	18150	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	12638046	12635650	-	transcript_id-"25c879fa-174e-4180-8a43-b08e3565cad4|4"
Chr5	12637321	12637363	AT5TE44760	.	+	VANDAL3	MuDR	DNA	42	tiny	177	medium	1418919	pericentromeric	19066	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	12639576	12639600	AT5TE44765	.	+	ROMANIAT5	Copia	LTR	24	tiny	49	low	1421174	pericentromeric	16829	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	12639601	12650823	AT5TE44770	.	+	ATHILA2	Gypsy	LTR	11222	long	413	high	1421199	pericentromeric	5606	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	12650823	12650955	AT5TE44775	.	+	ATHILA2	Gypsy	LTR	132	short	413	high	1432421	pericentromeric	5474	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr5	12651184	12651257	AT5TE44780	.	-	ATREP5	Helitron	RC	73	tiny	624	high	1432782	pericentromeric	5172	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	12651257	12651669	AT5TE44785	.	+	ATREP10D	Helitron	RC	412	short	1295	high	1432855	pericentromeric	4760	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	12651669	12652823	AT5TE44790	.	+	ATREP19	.	DNA	1154	short	189	medium	1433267	pericentromeric	3606	no-CHH	no-CHH	.	.	.	.	.
Chr5	12652823	12654798	AT5TE44795	.	+	ATENSPM6	En-Spm	DNA	1975	short	151	medium	1434421	pericentromeric	1631	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	12654798	12654820	AT5TE44800	.	+	ATENSPM6	En-Spm	DNA	22	tiny	151	medium	1436396	pericentromeric	1609	no-RdDM	no-CHH	.	.	.	.	.
Chr5	12658012	12658510	AT5TE44810	.	+	ATMU2	MuDR	DNA	498	short	64	medium	1439610	chromoarm	0	no-RdDM	no-CHH	ExpressedAndAnnotated	12658650	12657892	-	transcript_id-"5e309454-bcb3-42e5-a202-eed9d2138574|3"
Chr5	12658889	12659281	AT5TE44815	.	+	HELITRONY3	Helitron	RC	392	short	1399	high	1440487	chromoarm	301	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12659439	12659902	AT5TE44820	.	+	ATHAT1	HAT	DNA	463	short	105	medium	1441037	chromoarm	851	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	12659950	12660198	AT5TE44825	.	+	ATREP7	Helitron	RC	248	short	164	medium	1441548	chromoarm	1362	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	12660198	12660248	AT5TE44830	.	+	ATREP8	Helitron	RC	50	tiny	75	medium	1441796	chromoarm	1610	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	12660248	12661282	AT5TE44835	.	+	ATREP8	Helitron	RC	1034	short	75	medium	1441846	chromoarm	1089	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	12661282	12661492	AT5TE44840	.	+	ATREP6	Helitron	RC	210	short	181	medium	1442880	chromoarm	879	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12664816	12665042	AT5TE44850	.	+	ATENSPM6	En-Spm	DNA	226	short	151	medium	1446414	chromoarm	2088	no-RdDM	no-CHH	.	.	.	.	.
Chr5	12667755	12668248	AT5TE44860	.	+	ATCOPIA88	Copia	LTR	493	short	8	low	1449353	chromoarm	5027	no-RdDM	no-CHH	.	.	.	.	.
Chr5	12668248	12669621	AT5TE44865	.	+	ATHILA4A	Gypsy	LTR	1373	short	310	high	1449846	chromoarm	5520	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	12669621	12669731	AT5TE44870	.	+	ATHILA4D_LTR	Gypsy	LTR	110	short	106	medium	1451219	chromoarm	6893	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12669731	12669945	AT5TE44875	.	+	ATREP10	Helitron	RC	214	short	63	medium	1451329	chromoarm	7003	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12669950	12673355	AT5TE44880	.	+	VANDAL3	MuDR	DNA	3405	medium	177	medium	1451548	chromoarm	7222	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	12671830	12671649	-	transcript_id-"f3fc36c8-f608-4bb6-b05f-ebd9c318a9c8|4"
Chr5	12673531	12673736	AT5TE44885	.	-	VANDAL17	MuDR	DNA	205	short	178	medium	1455129	chromoarm	10803	no-CHH	no-CHH	.	.	.	.	.
Chr5	12674827	12675080	AT5TE44890	.	+	Unassigned	.	Unassigned	253	short	.	low	1456425	chromoarm	12099	PolIV-and-RDR6-RdDM	PolIV-RdDM	ExpressedAndAnnotated	12674660	12675260	+	transcript_id-"d9a47e81-b00f-4ed0-8c46-2491068d18fd|6"
Chr5	12675192	12675336	AT5TE44895	.	+	BRODYAGA2	MuDR	DNA	144	short	525	high	1456790	chromoarm	12464	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	12680511	12680781	AT5TE44905	.	-	ATGP3	Gypsy	LTR	270	short	60	medium	1462109	chromoarm	17783	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	12684330	12684514	AT5TE44915	.	-	LIMPET1	MuDR	DNA	184	short	116	medium	1465928	chromoarm	20172	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	12685004	12686216	AT5TE44920	.	+	ATREP18	.	DNA	1212	short	391	high	1466602	chromoarm	18470	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	12685261	12685327	AT5TE44925	.	+	ATREP18	.	DNA	67	tiny	391	high	1466858	chromoarm	19359	.	.	.	.	.	.	.
Chr5	12687004	12687305	AT5TE44930	.	-	HELITRON4	Helitron	RC	301	short	199	medium	1468602	chromoarm	17381	no-RdDM	no-CHH	.	.	.	.	.
Chr5	12687305	12689033	AT5TE44935	.	-	HELITRON1	Helitron	RC	1728	short	130	medium	1468903	chromoarm	15653	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	12689085	12689241	AT5TE44940	.	-	HELITRON1	Helitron	RC	156	short	130	medium	1470683	chromoarm	15445	no-RdDM	no-CHH	ExpressedAndAnnotated	12689466	12688946	-	transcript_id-"9ce3b32e-c188-4e31-b725-6e7d0777ca83|16"
Chr5	12689462	12694797	AT5TE44945	.	-	HELITRON5	Helitron	RC	5335	long	56	medium	1471060	chromoarm	9889	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	12694797	12694843	AT5TE44950	.	-	HELITRON3	Helitron	RC	46	tiny	53	medium	1476395	chromoarm	9843	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	12696723	12699276	AT5TE44955	.	-	HELITRON4	Helitron	RC	2553	medium	199	medium	1478321	chromoarm	5410	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	12699446	12701576	AT5TE44960	.	-	HELITRON1	Helitron	RC	2130	medium	130	medium	1481044	chromoarm	3110	no-RdDM	no-RdDM	ExpressedAndAnnotated	12701674	12699134	-	transcript_id-"31ba7fe7-9774-4917-9503-b69da3f20a0f|3"
Chr5	12701576	12701666	AT5TE44965	.	-	HELITRON5	Helitron	RC	90	tiny	56	medium	1483174	chromoarm	3020	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	12701666	12702250	AT5TE44970	.	-	HELITRONY1D	Helitron	RC	584	short	756	high	1483264	chromoarm	2436	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	12702404	12703833	AT5TE44975	.	+	ATREP18	.	DNA	1429	short	391	high	1484002	chromoarm	853	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	12703833	12703927	AT5TE44980	.	+	ATREP18	.	DNA	94	tiny	391	high	1485431	chromoarm	759	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	12705858	12706348	AT5TE44985	.	+	ATGP8	Gypsy	LTR	490	short	92	medium	1487456	chromoarm	1070	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12706379	12706642	AT5TE44990	.	-	VANDAL1N1	MuDR	DNA	263	short	52	medium	1487977	chromoarm	1591	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	12706678	12706773	AT5TE44995	.	-	VANDAL1	MuDR	DNA	95	tiny	80	medium	1488276	chromoarm	1890	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12706978	12710657	AT5TE45000	.	+	ATENSPM5	En-Spm	DNA	3679	medium	111	medium	1488576	chromoarm	2190	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	12710657	12720096	AT5TE45005	.	+	ATHILA3	Gypsy	LTR	9439	long	243	high	1492255	chromoarm	5869	no-RdDM	no-RdDM	ExpressedAndAnnotated	12717185	12717785	+	transcript_id-"ab2aebaa-0676-469d-89bf-715b6212b052|3"
Chr5	12720681	12728161	AT5TE45010	.	+	ATENSPM7	En-Spm	DNA	7480	long	74	medium	1502279	chromoarm	15893	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	12728887	12729809	AT5TE45015	.	-	HARBINGER	Harbinger	DNA	922	short	90	medium	1510485	chromoarm	24099	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12730320	12730533	AT5TE45020	.	+	ATENSPM6	En-Spm	DNA	213	short	151	medium	1511918	chromoarm	25532	no-RdDM	no-CHH	ExpressedAndAnnotated	12730305,12730352,12730352,12730352,12730352	12732168,12732128,12732166,12732170,12732209	+,+,+,+,+	transcript_id-"d7e831d3-227c-4492-b1df-13b3146a7e14|6",transcript_id-"f86ffe21-9ba6-456d-bc3c-9ea2552f997e|6",transcript_id-"b607d208-026b-4b17-8ac8-dc78bf8552b3|6",transcript_id-"586c40c9-dfef-4315-a3af-b37ae97ffcd4|39",transcript_id-"721bfdad-a855-4bc9-936e-cb0b322497d0|5"
Chr5	12732082	12732568	AT5TE45025	.	+	ATENSPM3	En-Spm	DNA	486	short	98	medium	1513680	chromoarm	27294	no-RdDM	no-CHH	ExpressedAndAnnotated	12730305,12730352,12730352,12730352,12730352	12732168,12732166,12732170,12732170,12732209	+,+,+,+,+	transcript_id-"d7e831d3-227c-4492-b1df-13b3146a7e14|6",transcript_id-"b607d208-026b-4b17-8ac8-dc78bf8552b3|6",transcript_id-"4ebdafec-6c2b-4ef2-a1de-96254d997707|7",transcript_id-"586c40c9-dfef-4315-a3af-b37ae97ffcd4|39",transcript_id-"721bfdad-a855-4bc9-936e-cb0b322497d0|5"
Chr5	12732980	12733393	AT5TE45030	.	-	VANDAL1N1	MuDR	DNA	413	short	52	medium	1514578	chromoarm	28192	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	12733506	12733766	AT5TE45035	.	-	VANDAL2N1	MuDR	DNA	260	short	51	medium	1515104	chromoarm	28718	no-RdDM	no-CHH	.	.	.	.	.
Chr5	12733766	12736516	AT5TE45040	.	-	VANDAL1N1	MuDR	DNA	2750	medium	52	medium	1515364	chromoarm	28978	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	12738298	12738463	AT5TE45045	.	-	ATGP10	Gypsy	LTR	165	short	165	medium	1519896	chromoarm	33510	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	12739303	12739557	AT5TE45050	.	-	ATHILA8B	Gypsy	LTR	254	short	78	medium	1520901	chromoarm	34515	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12739557	12744145	AT5TE45055	.	-	ATHILA0_I	Gypsy	LTR	4588	medium	138	medium	1521155	chromoarm	34769	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	12740996	12740476	-	transcript_id-"8e4af268-63db-4f06-8bdc-ab1179235005|3"
Chr5	12744145	12751391	AT5TE45060	.	-	ATGP10	Gypsy	LTR	7246	long	165	medium	1525743	chromoarm	33447	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	12744687,12745431,12745704,12746831,12752169,12752169	12744185,12744185,12746942,12748571,12750892,12750892	-,-,+,+,-,-	transcript_id-"88e5fd3c-075a-4c6d-a436-1d7b4cc937be|5",transcript_id-"70a6c490-7d51-48e5-813f-932d47850c71|16",transcript_id-"131607fc-894e-4a12-8f70-119d81e6f496|6",transcript_id-"5fb4bb2e-3dda-487d-bcff-4cdf995b2087|3",transcript_id-"dd970bf2-c0ed-4b46-8df7-76073281646c|3",transcript_id-"fd140bf3-d1e5-4a64-b936-6772a5afab58|7"
Chr5	12746197	12747967	AT5TE45065	.	+	ATHILA6A	Gypsy	LTR	1770	short	247	high	1527795	chromoarm	36871	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	12746823,12746831	12746994,12748571	+,+	transcript_id-"e026c960-5446-4eb9-a782-f025246cc218|4",transcript_id-"5fb4bb2e-3dda-487d-bcff-4cdf995b2087|3"
Chr5	12751391	12751631	AT5TE45075	.	-	ATGP10	Gypsy	LTR	240	short	165	medium	1532989	chromoarm	33207	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	12752169	12750892	-	transcript_id-"fd140bf3-d1e5-4a64-b936-6772a5afab58|7"
Chr5	12752507	12754476	AT5TE45080	.	-	ATHILA0_I	Gypsy	LTR	1969	short	138	medium	1534105	chromoarm	30362	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	12754476	12754504	AT5TE45085	.	-	ATHILA6B	Gypsy	LTR	28	tiny	134	medium	1536074	chromoarm	30334	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	12754603	12764996	AT5TE45090	.	-	ATLANTYS1	Gypsy	LTR	10393	long	153	medium	1536201	chromoarm	19842	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	12755440,12755440,12755548,12758152,12758156	12758456,12758460,12758460,12758425,12758402	+,+,+,+,+	transcript_id-"578ce437-5aa6-4a27-a36b-a056a68ac606|7",transcript_id-"6affd9da-0126-414e-9f8c-3aa3bca8a635|4",transcript_id-"6f1c076c-559a-40ee-b919-ec463011047d|9",transcript_id-"83c57a3b-fa9b-4812-9740-095c4ce9e1f5|3",transcript_id-"8527e286-a49f-40a1-918d-2fbf6e0d98be|45"
Chr5	12765777	12766030	AT5TE45095	.	-	ATHILA8B	Gypsy	LTR	253	short	78	medium	1547375	chromoarm	18808	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12766030	12766842	AT5TE45100	.	-	ATHILA3	Gypsy	LTR	812	short	243	high	1547628	chromoarm	17996	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	12766842	12768066	AT5TE45105	.	-	ATLANTYS1	Gypsy	LTR	1224	short	153	medium	1548440	chromoarm	16772	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	12767157,12767439	12766933,12778085	-,+	transcript_id-"648d292d-63b6-4d01-9210-299bcd69821b|19",transcript_id-"24420d51-be36-4516-adce-300ca18cf0dd|8"
Chr5	12768067	12768924	AT5TE45110	.	-	ATGP10	Gypsy	LTR	857	short	165	medium	1549665	chromoarm	15914	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	12769425,12769425,12769428	12768300,12768300,12768300	-,-,-	transcript_id-"8f731bde-d4c0-495a-81f0-2e4a3d1a15f2|3",transcript_id-"ea1ce472-3dd7-4d89-8383-f99e15ce063e|3",transcript_id-"43f9de29-ff91-4723-acff-679eae4d4ac5|5"
Chr5	12769619	12776835	AT5TE45115	.	-	ATLANTYS1	Gypsy	LTR	7216	long	153	medium	1551217	chromoarm	8003	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	12776752	12776513	-	transcript_id-"37136fb0-68c6-446d-8446-b618f6574ad7|7"
Chr5	12776835	12777019	AT5TE45120	.	+	ATHILA3	Gypsy	LTR	184	short	243	high	1558433	chromoarm	7819	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	12777019	12777234	AT5TE45125	.	+	ATLANTYS1	Gypsy	LTR	215	short	153	medium	1558617	chromoarm	7604	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	12777237	12778233	AT5TE45130	.	+	ATGP2	Gypsy	LTR	996	short	48	low	1558835	chromoarm	6605	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	12767439,12777218	12778085,12778081	+,+	transcript_id-"24420d51-be36-4516-adce-300ca18cf0dd|8",transcript_id-"d006d219-35a3-4267-ad18-d2775416e2d3|11"
Chr5	12778233	12779558	AT5TE45135	.	-	ATHILA8B	Gypsy	LTR	1325	short	78	medium	1559831	chromoarm	5280	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	12779558	12779757	AT5TE45140	.	-	ATHILA8A	Gypsy	LTR	199	short	97	medium	1561156	chromoarm	5081	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	12779757	12780043	AT5TE45145	.	-	ATHILA4A	Gypsy	LTR	286	short	310	high	1561355	chromoarm	4795	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	12781223	12781434	AT5TE45150	.	+	ATENSPM11	En-Spm	DNA	211	short	47	low	1562821	chromoarm	3404	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	12781434	12781677	AT5TE45155	.	+	ATHILA8B	Gypsy	LTR	243	short	78	medium	1563032	chromoarm	3161	no-RdDM	no-CHH	.	.	.	.	.
Chr5	12781680	12781915	AT5TE45160	.	+	ATHILA8A	Gypsy	LTR	235	short	97	medium	1563278	chromoarm	2923	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	12781916	12783620	AT5TE45165	.	-	ATHILA8A	Gypsy	LTR	1704	short	97	medium	1563514	chromoarm	1218	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	12783620	12783724	AT5TE45170	.	-	ATHILA8B	Gypsy	LTR	104	short	78	medium	1565218	chromoarm	1114	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	12784067	12784156	AT5TE45175	.	-	TAT1_ATH	Gypsy	LTR	89	tiny	87	medium	1565665	chromoarm	682	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	12788959	12789561	AT5TE45185	.	-	ATLANTYS2	Gypsy	LTR	602	short	179	medium	1570557	chromoarm	181	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	12789594	12791635	AT5TE45190	.	-	ATHILA4A	Gypsy	LTR	2041	medium	310	high	1571192	chromoarm	816	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	12791784	12791824	AT5TE45195	.	-	ATHILA4	Gypsy	LTR	40	tiny	250	high	1573382	chromoarm	3006	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	12791824	12794995	AT5TE45200	.	-	ATHILA4	Gypsy	LTR	3171	medium	250	high	1573422	chromoarm	3046	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr5	12794995	12796805	AT5TE45205	.	-	ATLANTYS1	Gypsy	LTR	1810	short	153	medium	1576593	chromoarm	6217	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	12796847	12798542	AT5TE45210	.	+	ATENSPM5	En-Spm	DNA	1696	short	111	medium	1578444	chromoarm	8068	.	.	.	.	.	.	.
Chr5	12798682	12799635	AT5TE45215	.	-	Unassigned	.	Unassigned	954	short	.	low	1580279	chromoarm	9903	.	.	.	.	.	.	.
Chr5	12800250	12801601	AT5TE45220	.	-	ATHILA8A	Gypsy	LTR	1352	short	97	medium	1581847	chromoarm	11471	.	.	.	.	.	.	.
Chr5	12801602	12801714	AT5TE45225	.	+	ATHILA4A	Gypsy	LTR	113	short	310	high	1583199	chromoarm	12823	.	.	.	.	.	.	.
Chr5	12801715	12802376	AT5TE45230	.	-	ATHILA4A	Gypsy	LTR	662	short	310	high	1583312	chromoarm	12936	.	.	.	.	.	.	.
Chr5	12802377	12802623	AT5TE45235	.	+	ATHILA5	Gypsy	LTR	247	short	131	medium	1583974	chromoarm	13598	.	.	.	.	.	.	.
Chr5	12802624	12803146	AT5TE45240	.	+	ATHILA3	Gypsy	LTR	523	short	243	high	1584221	chromoarm	13845	.	.	.	.	.	.	.
Chr5	12807542	12807610	AT5TE45250	.	+	ATDNA12T3_2	.	DNA	69	tiny	660	high	1589139	chromoarm	18763	.	.	.	.	.	.	.
Chr5	12807805	12807868	AT5TE45255	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	1589402	chromoarm	19026	.	.	.	.	.	.	.
Chr5	12808305	12808358	AT5TE45260	.	+	ATDNA12T3_2	.	DNA	54	tiny	660	high	1589902	chromoarm	19526	.	.	.	.	.	.	.
Chr5	12808553	12808616	AT5TE45265	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	1590150	chromoarm	19774	.	.	.	.	.	.	.
Chr5	12809052	12809105	AT5TE45270	.	+	ATDNA12T3_2	.	DNA	54	tiny	660	high	1590649	chromoarm	20273	.	.	.	.	.	.	.
Chr5	12809301	12809364	AT5TE45275	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	1590898	chromoarm	20522	.	.	.	.	.	.	.
Chr5	12809801	12809854	AT5TE45280	.	+	ATDNA12T3_2	.	DNA	54	tiny	660	high	1591398	chromoarm	21022	.	.	.	.	.	.	.
Chr5	12810049	12810112	AT5TE45285	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	1591646	chromoarm	21270	.	.	.	.	.	.	.
Chr5	12810549	12810602	AT5TE45290	.	+	ATDNA12T3_2	.	DNA	54	tiny	660	high	1592146	chromoarm	21770	.	.	.	.	.	.	.
Chr5	12810797	12810860	AT5TE45295	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	1592394	chromoarm	22018	.	.	.	.	.	.	.
Chr5	12811295	12811348	AT5TE45300	.	+	ATDNA12T3_2	.	DNA	54	tiny	660	high	1592892	chromoarm	22516	.	.	.	.	.	.	.
Chr5	12811544	12811607	AT5TE45305	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	1593141	chromoarm	22765	.	.	.	.	.	.	.
Chr5	12812043	12812095	AT5TE45310	.	+	ATDNA12T3_2	.	DNA	53	tiny	660	high	1593640	chromoarm	23264	.	.	.	.	.	.	.
Chr5	12812290	12812353	AT5TE45315	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	1593887	chromoarm	23511	.	.	.	.	.	.	.
Chr5	12812790	12812843	AT5TE45320	.	+	ATDNA12T3_2	.	DNA	54	tiny	660	high	1594387	chromoarm	24011	.	.	.	.	.	.	.
Chr5	12813040	12813103	AT5TE45325	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	1594637	chromoarm	24261	.	.	.	.	.	.	.
Chr5	12813540	12813593	AT5TE45330	.	+	ATDNA12T3_2	.	DNA	54	tiny	660	high	1595137	chromoarm	24761	.	.	.	.	.	.	.
Chr5	12813790	12813853	AT5TE45335	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	1595387	chromoarm	25011	.	.	.	.	.	.	.
Chr5	12814288	12814341	AT5TE45340	.	+	ATDNA12T3_2	.	DNA	54	tiny	660	high	1595885	chromoarm	25509	.	.	.	.	.	.	.
Chr5	12814524	12814587	AT5TE45345	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	1596121	chromoarm	25745	.	.	.	.	.	.	.
Chr5	12815024	12815087	AT5TE45350	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	1596621	chromoarm	26245	.	.	.	.	.	.	.
Chr5	12815525	12815578	AT5TE45355	.	+	ATDNA12T3_2	.	DNA	54	tiny	660	high	1597122	chromoarm	26746	.	.	.	.	.	.	.
Chr5	12815767	12815836	AT5TE45360	.	+	ATDNA12T3_2	.	DNA	70	tiny	660	high	1597364	chromoarm	26988	.	.	.	.	.	.	.
Chr5	12816273	12816326	AT5TE45365	.	+	ATDNA12T3_2	.	DNA	54	tiny	660	high	1597870	chromoarm	27494	.	.	.	.	.	.	.
Chr5	12816519	12816581	AT5TE45370	.	+	ATDNA12T3_2	.	DNA	63	tiny	660	high	1598116	chromoarm	27740	.	.	.	.	.	.	.
Chr5	12817017	12817070	AT5TE45375	.	+	ATDNA12T3_2	.	DNA	54	tiny	660	high	1598614	chromoarm	28238	.	.	.	.	.	.	.
Chr5	12817265	12817328	AT5TE45380	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	1598862	chromoarm	28486	.	.	.	.	.	.	.
Chr5	12817765	12817828	AT5TE45385	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	1599362	chromoarm	28986	.	.	.	.	.	.	.
Chr5	12818264	12818317	AT5TE45390	.	+	ATDNA12T3_2	.	DNA	54	tiny	660	high	1599861	chromoarm	29485	.	.	.	.	.	.	.
Chr5	12818513	12818576	AT5TE45395	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	1600110	chromoarm	29734	.	.	.	.	.	.	.
Chr5	12819012	12819075	AT5TE45400	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	1600609	chromoarm	30233	.	.	.	.	.	.	.
Chr5	12819513	12819566	AT5TE45405	.	+	ATDNA12T3_2	.	DNA	54	tiny	660	high	1601110	chromoarm	30734	.	.	.	.	.	.	.
Chr5	12819761	12819824	AT5TE45410	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	1601358	chromoarm	30982	.	.	.	.	.	.	.
Chr5	12820261	12820314	AT5TE45415	.	+	ATDNA12T3_2	.	DNA	54	tiny	660	high	1601858	chromoarm	31482	.	.	.	.	.	.	.
Chr5	12820507	12820569	AT5TE45420	.	+	ATDNA12T3_2	.	DNA	63	tiny	660	high	1602104	chromoarm	31728	.	.	.	.	.	.	.
Chr5	12821005	12821058	AT5TE45425	.	+	ATDNA12T3_2	.	DNA	54	tiny	660	high	1602602	chromoarm	32226	.	.	.	.	.	.	.
Chr5	12821253	12821316	AT5TE45430	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	1602850	chromoarm	32474	.	.	.	.	.	.	.
Chr5	12821753	12821816	AT5TE45435	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	1603350	chromoarm	32974	.	.	.	.	.	.	.
Chr5	12822253	12822305	AT5TE45440	.	+	ATDNA12T3_2	.	DNA	53	tiny	660	high	1603850	chromoarm	33474	.	.	.	.	.	.	.
Chr5	12822501	12822564	AT5TE45445	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	1604098	chromoarm	33722	.	.	.	.	.	.	.
Chr5	12822999	12823051	AT5TE45450	.	+	ATDNA12T3_2	.	DNA	53	tiny	660	high	1604596	chromoarm	34220	.	.	.	.	.	.	.
Chr5	12823247	12823310	AT5TE45455	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	1604844	chromoarm	34468	.	.	.	.	.	.	.
Chr5	12823747	12823800	AT5TE45460	.	+	ATDNA12T3_2	.	DNA	54	tiny	660	high	1605344	chromoarm	34968	.	.	.	.	.	.	.
Chr5	12823997	12824050	AT5TE45465	.	+	ATDNA12T3_2	.	DNA	54	tiny	660	high	1605594	chromoarm	35218	.	.	.	.	.	.	.
Chr5	12824245	12824799	AT5TE45470	.	+	ATDNA12T3_2	.	DNA	555	short	660	high	1605842	chromoarm	35466	.	.	.	.	.	.	.
Chr5	12824996	12825049	AT5TE45475	.	+	ATDNA12T3_2	.	DNA	54	tiny	660	high	1606593	chromoarm	36217	.	.	.	.	.	.	.
Chr5	12825239	12825309	AT5TE45480	.	+	ATDNA12T3_2	.	DNA	71	tiny	660	high	1606836	chromoarm	36460	.	.	.	.	.	.	.
Chr5	12825747	12825797	AT5TE45485	.	+	ATDNA12T3_2	.	DNA	51	tiny	660	high	1607344	chromoarm	36968	.	.	.	.	.	.	.
Chr5	12825992	12826055	AT5TE45490	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	1607589	chromoarm	37213	.	.	.	.	.	.	.
Chr5	12826490	12826553	AT5TE45495	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	1608087	chromoarm	37711	.	.	.	.	.	.	.
Chr5	12826969	12827039	AT5TE45500	.	+	ATDNA12T3_2	.	DNA	71	tiny	660	high	1608566	chromoarm	38190	.	.	.	.	.	.	.
Chr5	12827238	12827299	AT5TE45505	.	+	ATDNA12T3_2	.	DNA	62	tiny	660	high	1608835	chromoarm	38459	.	.	.	.	.	.	.
Chr5	12828813	12828876	AT5TE45510	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	1610410	chromoarm	40034	.	.	.	.	.	.	.
Chr5	12833309	12833362	AT5TE45520	.	+	ATDNA12T3_2	.	DNA	54	tiny	660	high	1614906	chromoarm	44530	.	.	.	.	.	.	.
Chr5	12833557	12833620	AT5TE45525	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	1615154	chromoarm	44778	.	.	.	.	.	.	.
Chr5	12837841	12838774	AT5TE45535	.	-	ATLANTYS1	Gypsy	LTR	934	short	153	medium	1619438	chromoarm	49062	.	.	.	.	.	.	.
Chr5	12838816	12840511	AT5TE45540	.	+	ATENSPM5	En-Spm	DNA	1696	short	111	medium	1620413	chromoarm	50037	.	.	.	.	.	.	.
Chr5	12842219	12843570	AT5TE45545	.	-	ATHILA8A	Gypsy	LTR	1352	short	97	medium	1623816	chromoarm	53440	.	.	.	.	.	.	.
Chr5	12843571	12843683	AT5TE45550	.	+	ATHILA4A	Gypsy	LTR	113	short	310	high	1625168	chromoarm	54792	.	.	.	.	.	.	.
Chr5	12843684	12844345	AT5TE45555	.	-	ATHILA4A	Gypsy	LTR	662	short	310	high	1625281	chromoarm	54905	.	.	.	.	.	.	.
Chr5	12844346	12844590	AT5TE45560	.	+	ATHILA5	Gypsy	LTR	245	short	131	medium	1625943	chromoarm	55567	.	.	.	.	.	.	.
Chr5	12844591	12845117	AT5TE45565	.	+	ATHILA0_I	Gypsy	LTR	527	short	138	medium	1626188	chromoarm	55812	.	.	.	.	.	.	.
Chr5	12849511	12849837	AT5TE45575	.	+	ATDNA12T3_2	.	DNA	327	short	660	high	1631108	chromoarm	60732	.	.	.	.	.	.	.
Chr5	12850274	12850327	AT5TE45580	.	+	ATDNA12T3_2	.	DNA	54	tiny	660	high	1631871	chromoarm	61495	.	.	.	.	.	.	.
Chr5	12850522	12850585	AT5TE45585	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	1632119	chromoarm	61743	.	.	.	.	.	.	.
Chr5	12851021	12851074	AT5TE45590	.	+	ATDNA12T3_2	.	DNA	54	tiny	660	high	1632618	chromoarm	62242	.	.	.	.	.	.	.
Chr5	12851270	12851333	AT5TE45595	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	1632867	chromoarm	62491	.	.	.	.	.	.	.
Chr5	12851770	12851823	AT5TE45600	.	+	ATDNA12T3_2	.	DNA	54	tiny	660	high	1633367	chromoarm	62991	.	.	.	.	.	.	.
Chr5	12852018	12852081	AT5TE45605	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	1633615	chromoarm	63239	.	.	.	.	.	.	.
Chr5	12852518	12852571	AT5TE45610	.	+	ATDNA12T3_2	.	DNA	54	tiny	660	high	1634115	chromoarm	63739	.	.	.	.	.	.	.
Chr5	12852766	12852829	AT5TE45615	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	1634363	chromoarm	63987	.	.	.	.	.	.	.
Chr5	12853264	12853317	AT5TE45620	.	+	ATDNA12T3_2	.	DNA	54	tiny	660	high	1634861	chromoarm	64485	.	.	.	.	.	.	.
Chr5	12853513	12853576	AT5TE45625	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	1635110	chromoarm	64734	.	.	.	.	.	.	.
Chr5	12854012	12854064	AT5TE45630	.	+	ATDNA12T3_2	.	DNA	53	tiny	660	high	1635609	chromoarm	65233	.	.	.	.	.	.	.
Chr5	12854259	12854322	AT5TE45635	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	1635856	chromoarm	65480	.	.	.	.	.	.	.
Chr5	12854759	12854812	AT5TE45640	.	+	ATDNA12T3_2	.	DNA	54	tiny	660	high	1636356	chromoarm	65553	.	.	.	.	.	.	.
Chr5	12855009	12855072	AT5TE45645	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	1636606	chromoarm	65293	.	.	.	.	.	.	.
Chr5	12855509	12855562	AT5TE45650	.	+	ATDNA12T3_2	.	DNA	54	tiny	660	high	1637106	chromoarm	64803	.	.	.	.	.	.	.
Chr5	12855759	12855822	AT5TE45655	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	1637356	chromoarm	64543	.	.	.	.	.	.	.
Chr5	12856259	12856312	AT5TE45660	.	+	ATDNA12T3_2	.	DNA	54	tiny	660	high	1637856	chromoarm	64053	.	.	.	.	.	.	.
Chr5	12856509	12856572	AT5TE45665	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	1638106	chromoarm	63793	.	.	.	.	.	.	.
Chr5	12857007	12857060	AT5TE45670	.	+	ATDNA12T3_2	.	DNA	54	tiny	660	high	1638604	chromoarm	63305	.	.	.	.	.	.	.
Chr5	12857243	12857306	AT5TE45675	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	1638840	chromoarm	63059	.	.	.	.	.	.	.
Chr5	12857743	12857806	AT5TE45680	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	1639340	chromoarm	62559	.	.	.	.	.	.	.
Chr5	12858244	12858297	AT5TE45685	.	+	ATDNA12T3_2	.	DNA	54	tiny	660	high	1639841	chromoarm	62068	.	.	.	.	.	.	.
Chr5	12858486	12858555	AT5TE45690	.	+	ATDNA12T3_2	.	DNA	70	tiny	660	high	1640083	chromoarm	61810	.	.	.	.	.	.	.
Chr5	12858992	12859045	AT5TE45695	.	+	ATDNA12T3_2	.	DNA	54	tiny	660	high	1640589	chromoarm	61320	.	.	.	.	.	.	.
Chr5	12859238	12859300	AT5TE45700	.	+	ATDNA12T3_2	.	DNA	63	tiny	660	high	1640835	chromoarm	61065	.	.	.	.	.	.	.
Chr5	12859736	12859789	AT5TE45705	.	+	ATDNA12T3_2	.	DNA	54	tiny	660	high	1641333	chromoarm	60576	.	.	.	.	.	.	.
Chr5	12859984	12860047	AT5TE45710	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	1641581	chromoarm	60318	.	.	.	.	.	.	.
Chr5	12860484	12860547	AT5TE45715	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	1642081	chromoarm	59818	.	.	.	.	.	.	.
Chr5	12860984	12861036	AT5TE45720	.	+	ATDNA12T3_2	.	DNA	53	tiny	660	high	1642581	chromoarm	59329	.	.	.	.	.	.	.
Chr5	12861232	12861304	AT5TE45725	.	+	ATDNA12T3_2	.	DNA	73	tiny	660	high	1642829	chromoarm	59061	.	.	.	.	.	.	.
Chr5	12861731	12861794	AT5TE45730	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	1643328	chromoarm	58571	.	.	.	.	.	.	.
Chr5	12862232	12862285	AT5TE45735	.	+	ATDNA12T3_2	.	DNA	54	tiny	660	high	1643829	chromoarm	58080	.	.	.	.	.	.	.
Chr5	12862480	12862543	AT5TE45740	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	1644077	chromoarm	57822	.	.	.	.	.	.	.
Chr5	12862980	12863033	AT5TE45745	.	+	ATDNA12T3_2	.	DNA	54	tiny	660	high	1644577	chromoarm	57332	.	.	.	.	.	.	.
Chr5	12863226	12863288	AT5TE45750	.	+	ATDNA12T3_2	.	DNA	63	tiny	660	high	1644823	chromoarm	57077	.	.	.	.	.	.	.
Chr5	12863724	12863777	AT5TE45755	.	+	ATDNA12T3_2	.	DNA	54	tiny	660	high	1645321	chromoarm	56588	.	.	.	.	.	.	.
Chr5	12863972	12864035	AT5TE45760	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	1645569	chromoarm	56330	.	.	.	.	.	.	.
Chr5	12864472	12864535	AT5TE45765	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	1646069	chromoarm	55830	.	.	.	.	.	.	.
Chr5	12864971	12865024	AT5TE45770	.	+	ATDNA12T3_2	.	DNA	54	tiny	660	high	1646568	chromoarm	55341	.	.	.	.	.	.	.
Chr5	12865220	12865292	AT5TE45775	.	+	ATDNA12T3_2	.	DNA	73	tiny	660	high	1646817	chromoarm	55073	.	.	.	.	.	.	.
Chr5	12865718	12865770	AT5TE45780	.	+	ATDNA12T3_2	.	DNA	53	tiny	660	high	1647315	chromoarm	54595	.	.	.	.	.	.	.
Chr5	12865966	12866029	AT5TE45785	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	1647563	chromoarm	54336	.	.	.	.	.	.	.
Chr5	12866466	12866519	AT5TE45790	.	+	ATDNA12T3_2	.	DNA	54	tiny	660	high	1648063	chromoarm	53846	.	.	.	.	.	.	.
Chr5	12866716	12866769	AT5TE45795	.	+	ATDNA12T3_2	.	DNA	54	tiny	660	high	1648313	chromoarm	53596	.	.	.	.	.	.	.
Chr5	12866964	12867518	AT5TE45800	.	+	ATDNA12T3_2	.	DNA	555	short	660	high	1648561	chromoarm	52847	.	.	.	.	.	.	.
Chr5	12867715	12867768	AT5TE45805	.	+	ATDNA12T3_2	.	DNA	54	tiny	660	high	1649312	chromoarm	52597	.	.	.	.	.	.	.
Chr5	12867958	12868028	AT5TE45810	.	+	ATDNA12T3_2	.	DNA	71	tiny	660	high	1649555	chromoarm	52337	.	.	.	.	.	.	.
Chr5	12868466	12868516	AT5TE45815	.	+	ATDNA12T3_2	.	DNA	51	tiny	660	high	1650063	chromoarm	51849	.	.	.	.	.	.	.
Chr5	12868711	12868783	AT5TE45820	.	+	ATDNA12T3_2	.	DNA	73	tiny	660	high	1650308	chromoarm	51582	.	.	.	.	.	.	.
Chr5	12869209	12869272	AT5TE45825	.	+	ATDNA12T3_2	.	DNA	64	tiny	660	high	1650806	chromoarm	51093	.	.	.	.	.	.	.
Chr5	12869688	12869758	AT5TE45830	.	+	ATDNA12T3_2	.	DNA	71	tiny	660	high	1651285	chromoarm	50607	.	.	.	.	.	.	.
Chr5	12869957	12870018	AT5TE45835	.	+	ATDNA12T3_2	.	DNA	62	tiny	660	high	1651554	chromoarm	50347	.	.	.	.	.	.	.
Chr5	12887499	12887916	AT5TE45890	.	+	HELITRON4	Helitron	RC	417	short	199	medium	1669097	chromoarm	32449	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12887930	12889536	AT5TE45895	.	+	HELITRON4	Helitron	RC	1606	short	199	medium	1669528	chromoarm	30829	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	12889536	12890713	AT5TE45900	.	+	ATHILA4	Gypsy	LTR	1177	short	250	high	1671134	chromoarm	29652	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	12890713	12893944	AT5TE45905	.	+	HELITRON4	Helitron	RC	3231	medium	199	medium	1672311	chromoarm	26421	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	12894813	12894870	AT5TE45910	.	+	ATGP8	Gypsy	LTR	57	tiny	92	medium	1676411	chromoarm	25495	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	12896050	12896662	AT5TE45915	.	+	ATGP8	Gypsy	LTR	612	short	92	medium	1677648	chromoarm	23703	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	12896677	12913435	AT5TE45920	.	+	HELITRON4	Helitron	RC	16758	long	199	medium	1678275	chromoarm	6930	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	12897911	12902596	AT5TE45925	.	-	ATGP8	Gypsy	LTR	4685	medium	92	medium	1679509	chromoarm	17769	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	12913435	12913687	AT5TE45960	.	+	VANDAL5A	MuDR	DNA	252	short	56	medium	1695033	chromoarm	6678	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	12915399	12915789	AT5TE45965	.	+	ATDNAI27T9C	MuDR	DNA	390	short	108	medium	1696997	chromoarm	4576	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12915854	12915911	AT5TE45970	.	-	ATDNAI26T9	MuDR	DNA	57	tiny	25	low	1697452	chromoarm	4454	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12916128	12916336	AT5TE45975	.	-	ATDNAI26T9	MuDR	DNA	208	short	25	low	1697726	chromoarm	4029	no-RdDM	no-CHH	.	.	.	.	.
Chr5	12917893	12918007	AT5TE45980	.	+	ATDNA1T9A	MuDR	DNA	114	short	36	low	1699491	chromoarm	2358	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	12918007	12918188	AT5TE45985	.	+	HELITRON4	Helitron	RC	181	short	199	medium	1699605	chromoarm	2177	DCL3-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	12919889	12919927	AT5TE45990	.	+	ATHILA	Gypsy	LTR	38	tiny	198	medium	1701487	chromoarm	438	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	12919927	12920503	AT5TE45995	.	+	ATHILA3	Gypsy	LTR	576	short	243	high	1701525	chromoarm	0	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	12921648	12922510	AT5TE46000	.	+	ATENSPM6	En-Spm	DNA	862	short	151	medium	1703246	chromoarm	630	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	12923605	12923768	AT5TE46005	.	+	ATENSPM9	En-Spm	DNA	163	short	97	medium	1705203	chromoarm	2587	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	12923768	12925166	AT5TE46010	.	+	ATHILA3	Gypsy	LTR	1398	short	243	high	1705366	chromoarm	2750	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12925171	12928865	AT5TE46015	.	-	ATHILA3	Gypsy	LTR	3694	medium	243	high	1706769	chromoarm	4153	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr5	12928895	12929183	AT5TE46020	.	-	ATHILA5	Gypsy	LTR	288	short	131	medium	1710493	chromoarm	7877	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	12929183	12929558	AT5TE46025	.	-	ATHILA	Gypsy	LTR	375	short	198	medium	1710781	chromoarm	8165	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	12929558	12929944	AT5TE46030	.	+	ATHILA0_I	Gypsy	LTR	386	short	138	medium	1711156	chromoarm	8540	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	12929944	12930250	AT5TE46035	.	-	ATHILA3	Gypsy	LTR	306	short	243	high	1711542	chromoarm	8926	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	12930267	12933726	AT5TE46040	.	-	ATHILA5	Gypsy	LTR	3459	medium	131	medium	1711865	chromoarm	9249	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	12932254	12931568	-	transcript_id-"19471ca4-063d-4eb8-adcf-5de94a8060c0|3"
Chr5	12930815	12932432	AT5TE46045	.	-	ATHILA	Gypsy	LTR	1617	short	198	medium	1712413	chromoarm	9797	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	12932254	12931568	-	transcript_id-"19471ca4-063d-4eb8-adcf-5de94a8060c0|3"
Chr5	12933726	12933849	AT5TE46050	.	-	ATHILA0_I	Gypsy	LTR	123	short	138	medium	1715324	chromoarm	12708	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	12933882	12935398	AT5TE46055	.	-	ATHILA3	Gypsy	LTR	1516	short	243	high	1715480	chromoarm	12864	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	12935398	12938096	AT5TE46060	.	+	ATHILA4	Gypsy	LTR	2698	medium	250	high	1716996	chromoarm	14380	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	12938096	12938563	AT5TE46065	.	+	ATHILA4	Gypsy	LTR	467	short	250	high	1719694	chromoarm	17078	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	12938108	12938537	AT5TE46070	.	+	ATHILA4	Gypsy	LTR	429	short	250	high	1719706	chromoarm	17090	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	12938616	12939146	AT5TE46075	.	-	ATLANTYS1	Gypsy	LTR	530	short	153	medium	1720214	chromoarm	17598	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	12939146	12939579	AT5TE46080	.	+	ATHILA4	Gypsy	LTR	433	short	250	high	1720744	chromoarm	18128	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	12939734	12940566	AT5TE46085	.	+	ATHILA4A	Gypsy	LTR	832	short	310	high	1721332	chromoarm	18716	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	12940568	12944561	AT5TE46090	.	-	ATLANTYS1	Gypsy	LTR	3993	medium	153	medium	1722166	chromoarm	17120	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	12944579	12946019	AT5TE46095	.	+	ATHILA4B_LTR	Gypsy	LTR	1440	short	143	medium	1726177	chromoarm	15662	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	12946019	12948318	AT5TE46100	.	-	ATHILA3	Gypsy	LTR	2299	medium	243	high	1727617	chromoarm	13363	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	12948318	12951060	AT5TE46105	.	+	ATLANTYS1	Gypsy	LTR	2742	medium	153	medium	1729916	chromoarm	10621	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	12951061	12953749	AT5TE46110	.	+	ATHILA	Gypsy	LTR	2688	medium	198	medium	1732659	chromoarm	7932	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	12953749	12953830	AT5TE46115	.	+	ATHILA6A	Gypsy	LTR	81	tiny	247	high	1735347	chromoarm	7851	no-RdDM	no-CHH	.	.	.	.	.
Chr5	12954200	12955996	AT5TE46120	.	+	ATHILA	Gypsy	LTR	1796	short	198	medium	1735798	chromoarm	5685	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12957076	12959835	AT5TE46125	.	+	ATENSPM2	En-Spm	DNA	2759	medium	114	medium	1738674	chromoarm	1846	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	12959835	12960005	AT5TE46130	.	+	ATENSPM5	En-Spm	DNA	170	short	111	medium	1741433	chromoarm	1676	no-CHH	no-CHH	.	.	.	.	.
Chr5	12960211	12960449	AT5TE46135	.	-	ATREP4	Helitron	RC	238	short	832	high	1741809	chromoarm	1232	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	12960449	12961547	AT5TE46140	.	-	HELITRONY1D	Helitron	RC	1098	short	756	high	1742047	chromoarm	134	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	12963990	12964619	AT5TE46145	.	-	HELITRONY3A	Helitron	RC	629	short	49	low	1745588	chromoarm	98	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	12966297	12966478	AT5TE46150	.	+	ATENSPM1	En-Spm	DNA	181	short	30	low	1747895	chromoarm	2405	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	12966768	12968156	AT5TE46155	.	-	VANDAL20	MuDR	DNA	1388	short	51	medium	1748366	chromoarm	2876	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	12968109,12967819,12967959,12967959,12967959	12966823,12967393,12968205,12968385,12968433	-,-,+,+,+	transcript_id-"44d89e91-7d07-4480-99cb-ce6b44798a15|3",transcript_id-"ef72d746-7e36-4679-8504-bd406efffeaf|3",transcript_id-"7ce14c35-0e08-4606-bdf2-5789b3c4741f|3",transcript_id-"e370eee7-6bcd-4374-9d9e-a98bcc0da2c3|3",transcript_id-"c19d7d7e-4ee8-48d3-a39a-2e83af192220|4"
Chr5	12968299	12968626	AT5TE46160	.	-	ATGP10	Gypsy	LTR	327	short	165	medium	1749897	chromoarm	4407	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr5	12970321	12973859	AT5TE46165	.	-	VANDAL20	MuDR	DNA	3538	medium	51	medium	1751919	chromoarm	6429	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	12973019	12973342	+	transcript_id-"9cae65e2-9cdc-4b97-baef-e99833d5ea71|3"
Chr5	12973859	12973923	AT5TE46170	.	-	VANDAL20	MuDR	DNA	64	tiny	51	medium	1755457	chromoarm	7721	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	12973923	12981780	AT5TE46175	.	-	VANDAL20	MuDR	DNA	7857	long	51	medium	1755521	chromoarm	0	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	12977358	12976437	-	transcript_id-"31b3e4c1-089c-4069-9ff4-28758586582f|62"
Chr5	12981780	12981791	AT5TE46180	.	-	VANDAL20	MuDR	DNA	11	tiny	51	medium	1763378	chromoarm	0	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	12985543	12988654	AT5TE46190	.	-	ATLANTYS1	Gypsy	LTR	3111	medium	153	medium	1767141	chromoarm	2654	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	12988926	12989177	AT5TE46195	.	-	ATLANTYS2	Gypsy	LTR	251	short	179	medium	1770524	chromoarm	6037	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12989299	12989584	AT5TE46200	.	-	ATLANTYS2	Gypsy	LTR	285	short	179	medium	1770897	chromoarm	6410	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	12989584	12989630	AT5TE46205	.	-	TAT1_ATH	Gypsy	LTR	46	tiny	87	medium	1771182	chromoarm	6695	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	12991094	12996437	AT5TE46210	.	+	ATHILA8B	Gypsy	LTR	5343	long	78	medium	1772692	chromoarm	8205	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	12991685,12994802,12995107	12993605,12995581,12995586	+,+,+	transcript_id-"ea52a302-c1fe-402b-b14f-ad2064abd4b8|5",transcript_id-"7c90d17b-d611-43bc-93f6-bfd7ab76b822|3",transcript_id-"e8b4b708-bb61-4845-a27f-a6200c9c5b8e|9"
Chr5	12996437	13012738	AT5TE46215	.	+	ATHILA6A	Gypsy	LTR	16301	long	247	high	1778035	chromoarm	13548	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	12996652,12997016,13004681,13004688,13004706,13007514	12997257,12997260,13007709,13007782,13007773,13007748	+,+,+,+,+,+	transcript_id-"33d2c66d-a9d0-4a73-b369-387a92f73874|4",transcript_id-"c828d1e8-13b4-427f-8749-b9c29745b099|19",transcript_id-"dc5c3df3-063d-4cd3-80a8-4a2c49e984f5|4",transcript_id-"15723eb1-5884-400a-9a9f-ce6a82d7602c|32",transcript_id-"4b02f783-edaf-4222-8681-7eb979eea59d|3",transcript_id-"168df444-e544-4dd4-be79-7eab4e2eb700|3"
Chr5	13004466	13009799	AT5TE46220	.	+	ATIS112A	Harbinger	DNA	5333	long	173	medium	1786064	chromoarm	21577	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	13004681,13004688,13004706,13007514	13007709,13007782,13007773,13007748	+,+,+,+	transcript_id-"dc5c3df3-063d-4cd3-80a8-4a2c49e984f5|4",transcript_id-"15723eb1-5884-400a-9a9f-ce6a82d7602c|32",transcript_id-"4b02f783-edaf-4222-8681-7eb979eea59d|3",transcript_id-"168df444-e544-4dd4-be79-7eab4e2eb700|3"
Chr5	13012738	13012910	AT5TE46230	.	+	ATHILA6A	Gypsy	LTR	172	short	247	high	1794336	chromoarm	29849	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	13012910	13015635	AT5TE46235	.	+	ATHILA8B	Gypsy	LTR	2725	medium	78	medium	1794508	chromoarm	30021	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr5	13015635	13015667	AT5TE46240	.	-	ATGP10	Gypsy	LTR	32	tiny	165	medium	1797233	chromoarm	32746	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	13015667	13015811	AT5TE46245	.	-	ATGP10	Gypsy	LTR	144	short	165	medium	1797265	chromoarm	32778	no-RdDM	no-CHH	.	.	.	.	.
Chr5	13015811	13017424	AT5TE46250	.	-	ATGP10	Gypsy	LTR	1613	short	165	medium	1797409	chromoarm	32922	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr5	13017754	13018510	AT5TE46255	.	-	ATHILA3	Gypsy	LTR	756	short	243	high	1799352	chromoarm	34865	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	13018511	13021845	AT5TE46260	.	+	ATHILA4	Gypsy	LTR	3334	medium	250	high	1800109	chromoarm	35622	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr5	13018759	13019455	AT5TE46265	.	-	ATGP10	Gypsy	LTR	696	short	165	medium	1800357	chromoarm	35870	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	13019455	13020572	AT5TE46270	.	-	ATGP10	Gypsy	LTR	1117	short	165	medium	1801053	chromoarm	36566	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr5	13020572	13020599	AT5TE46275	.	-	ATGP10	Gypsy	LTR	27	tiny	165	medium	1802170	chromoarm	37683	no-RdDM	no-CHH	.	.	.	.	.
Chr5	13021859	13027035	AT5TE46280	.	+	ATHILA3	Gypsy	LTR	5176	long	243	high	1803457	chromoarm	34159	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr5	13027469	13027505	AT5TE46285	.	+	ATHILA	Gypsy	LTR	36	tiny	198	medium	1809067	chromoarm	33689	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	13027505	13028564	AT5TE46290	.	+	ATHILA5	Gypsy	LTR	1059	short	131	medium	1809103	chromoarm	32630	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr5	13028564	13028615	AT5TE46295	.	+	ATHILA5	Gypsy	LTR	51	tiny	131	medium	1810162	chromoarm	32579	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	13028615	13029135	AT5TE46300	.	+	ATHILA	Gypsy	LTR	520	short	198	medium	1810213	chromoarm	32059	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr5	13029135	13029183	AT5TE46305	.	+	ATHILA3	Gypsy	LTR	48	tiny	243	high	1810733	chromoarm	32011	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	13029183	13032574	AT5TE46310	.	+	ATHILA0_I	Gypsy	LTR	3391	medium	138	medium	1810781	chromoarm	28620	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	13029547	13030139	+	transcript_id-"8b30f46b-0e88-4691-a6db-f0642109ef45|91"
Chr5	13032574	13034075	AT5TE46315	.	+	ATHILA3	Gypsy	LTR	1501	short	243	high	1814172	chromoarm	27119	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr5	13034075	13035624	AT5TE46320	.	+	ATHILA3	Gypsy	LTR	1549	short	243	high	1815673	chromoarm	25570	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr5	13035695	13035983	AT5TE46325	.	+	ATHILA0_I	Gypsy	LTR	288	short	138	medium	1817293	chromoarm	25211	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	13036260	13036296	AT5TE46330	.	+	ATHILA	Gypsy	LTR	36	tiny	198	medium	1817858	chromoarm	24898	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr5	13036296	13037354	AT5TE46335	.	+	ATHILA5	Gypsy	LTR	1058	short	131	medium	1817894	chromoarm	23840	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	13037354	13037405	AT5TE46340	.	+	ATHILA5	Gypsy	LTR	51	tiny	131	medium	1818952	chromoarm	23789	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	13037448	13037946	AT5TE46345	.	+	ATHILA5	Gypsy	LTR	498	short	131	medium	1819046	chromoarm	23248	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	13037946	13039645	AT5TE46350	.	+	ATHILA3	Gypsy	LTR	1699	short	243	high	1819544	chromoarm	21549	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr5	13039645	13042256	AT5TE46355	.	-	ATHILA4A	Gypsy	LTR	2611	medium	310	high	1821243	chromoarm	18938	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	13042256	13042542	AT5TE46360	.	-	ATHILA4C	Gypsy	LTR	286	short	206	high	1823854	chromoarm	18652	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr5	13042542	13043098	AT5TE46365	.	-	ATHILA4	Gypsy	LTR	556	short	250	high	1824140	chromoarm	18096	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr5	13043098	13045245	AT5TE46370	.	-	ATHILA4	Gypsy	LTR	2147	medium	250	high	1824696	chromoarm	15949	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	13043816	13043838	AT5TE46375	.	-	ATHILA4	Gypsy	LTR	22	tiny	250	high	1825414	chromoarm	17356	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	13045245	13046896	AT5TE46380	.	+	ATHILA3	Gypsy	LTR	1651	short	243	high	1826843	chromoarm	14298	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	13046904	13047545	AT5TE46385	.	+	ATHILA4	Gypsy	LTR	641	short	250	high	1828502	chromoarm	13649	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	13047545	13049707	AT5TE46390	.	+	ATHILA4A	Gypsy	LTR	2162	medium	310	high	1829143	chromoarm	11487	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	13049707	13049743	AT5TE46395	.	-	ARNOLDY1	MuDR	DNA	36	tiny	237	high	1831305	chromoarm	11451	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	13049743	13051568	AT5TE46400	.	+	ARNOLDY1	MuDR	DNA	1825	short	237	high	1831341	chromoarm	9626	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13051568	13051835	AT5TE46405	.	-	ATREP15	Helitron	RC	267	short	1003	high	1833166	chromoarm	9359	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	13051835	13051956	AT5TE46410	.	+	HELITRONY2	Helitron	RC	121	short	198	medium	1833433	chromoarm	9238	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	13053874	13053971	AT5TE46415	.	+	ATREP3	Helitron	RC	97	tiny	1439	high	1835472	chromoarm	7223	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	13053971	13054473	AT5TE46420	.	-	ATDNA2T9C	MuDR	DNA	502	short	242	high	1835569	chromoarm	6721	no-CHH	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	13054473	13056083	AT5TE46425	.	-	VANDAL17	MuDR	DNA	1610	short	178	medium	1836071	chromoarm	5111	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	13055355	13055453	AT5TE46430	.	-	VANDAL8	MuDR	DNA	98	tiny	123	medium	1836953	chromoarm	5741	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	13056956	13057208	AT5TE46435	.	-	VANDAL17	MuDR	DNA	252	short	178	medium	1838554	chromoarm	3986	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	13057487	13058483	AT5TE46440	.	+	ATHILA4C	Gypsy	LTR	996	short	206	high	1839085	chromoarm	2711	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	13058483	13058525	AT5TE46445	.	+	ATHILA4	Gypsy	LTR	42	tiny	250	high	1840081	chromoarm	2669	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	13058716	13058829	AT5TE46450	.	-	HELITRONY1D	Helitron	RC	113	short	756	high	1840314	chromoarm	2365	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	13058829	13059542	AT5TE46455	.	+	ATREP5	Helitron	RC	713	short	624	high	1840427	chromoarm	1652	no-CHH	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	13060533	13061058	AT5TE46460	.	+	HELITRONY3	Helitron	RC	525	short	1399	high	1842131	chromoarm	136	RDR6-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	13064353	13064628	AT5TE46470	.	-	ATREP5	Helitron	RC	275	short	624	high	1845951	chromoarm	2343	no-RdDM	no-CHH	.	.	.	.	.
Chr5	13064788	13066019	AT5TE46475	.	-	ATLINE1_6	L1	LINE	1231	short	129	medium	1846386	chromoarm	2778	no-RdDM	no-CHH	ExpressedAndAnnotated	13065935,13064774,13064774	13064660,13066139,13067097	-,+,+	transcript_id-"3c30ae31-1007-4e7b-9aca-0583176f1f3e|3",transcript_id-"ae3d0c3d-3c7b-41f8-8132-0c17b9bcec1b|4",transcript_id-"d47e9fda-7018-491d-a13c-efa10e9634b8|7"
Chr5	13066334	13066357	AT5TE46480	.	+	ATHILA6B	Gypsy	LTR	23	tiny	134	medium	1847932	chromoarm	4324	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	13066369	13067019	AT5TE46485	.	+	ATHILA6A	Gypsy	LTR	650	short	247	high	1847967	chromoarm	4359	no-RdDM	no-RdDM	ExpressedAndAnnotated	13064774	13067097	+	transcript_id-"d47e9fda-7018-491d-a13c-efa10e9634b8|7"
Chr5	13067019	13067045	AT5TE46490	.	+	ATHILA6A	Gypsy	LTR	26	tiny	247	high	1848617	chromoarm	5009	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	13067045	13067329	AT5TE46495	.	-	ATREP10C	Helitron	RC	284	short	123	medium	1848643	chromoarm	5035	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	13067813	13067843	AT5TE46500	.	+	ATREP10B	Helitron	RC	30	tiny	491	high	1849411	chromoarm	5803	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	13067853	13068764	AT5TE46505	.	-	HELITRONY1A	Helitron	RC	911	short	271	high	1849451	chromoarm	5843	no-RdDM	no-CHH	.	.	.	.	.
Chr5	13068764	13068918	AT5TE46510	.	+	HELITRONY1E	Helitron	RC	154	short	447	high	1850362	chromoarm	6754	no-CHH	no-CHH	.	.	.	.	.
Chr5	13069103	13077139	AT5TE46515	.	+	ATGP1	Gypsy	LTR	8036	long	144	medium	1850701	chromoarm	7093	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	13077868	13077929	AT5TE46520	.	+	HELITRONY3	Helitron	RC	61	tiny	1399	high	1859466	chromoarm	15858	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	13077929	13077956	AT5TE46525	.	+	HELITRONY1D	Helitron	RC	27	tiny	756	high	1859527	chromoarm	15919	no-CHH	no-CHH	.	.	.	.	.
Chr5	13077956	13079107	AT5TE46530	.	-	ATREP11	Helitron	RC	1151	short	841	high	1859554	chromoarm	14961	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	13079107	13079245	AT5TE46535	.	-	ATREP4	Helitron	RC	138	short	832	high	1860705	chromoarm	14823	no-RdDM	no-CHH	.	.	.	.	.
Chr5	13079245	13079335	AT5TE46540	.	+	ATREP10D	Helitron	RC	90	tiny	1295	high	1860843	chromoarm	14733	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	13079722	13079780	AT5TE46545	.	-	ATREP15	Helitron	RC	58	tiny	1003	high	1861320	chromoarm	14288	no-CHH	no-CHH	.	.	.	.	.
Chr5	13079780	13079947	AT5TE46550	.	-	ATREP3	Helitron	RC	167	short	1439	high	1861378	chromoarm	14121	no-CHH	no-CHH	.	.	.	.	.
Chr5	13079947	13080589	AT5TE46555	.	-	HELITRONY3	Helitron	RC	642	short	1399	high	1861545	chromoarm	13479	no-CHH	no-CHH	.	.	.	.	.
Chr5	13080589	13080763	AT5TE46560	.	+	ARNOLDY2	MuDR	DNA	174	short	288	high	1862187	chromoarm	13305	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13080764	13081898	AT5TE46565	.	-	HELITRONY3	Helitron	RC	1135	short	1399	high	1862361	chromoarm	12170	.	.	.	.	.	.	.
Chr5	13082844	13082974	AT5TE46570	.	+	ATREP3	Helitron	RC	130	short	1439	high	1864442	chromoarm	11094	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	13082974	13084475	AT5TE46575	.	+	ATREP10D	Helitron	RC	1501	short	1295	high	1864572	chromoarm	9593	no-RdDM	no-CHH	.	.	.	.	.
Chr5	13084910	13093500	AT5TE46580	.	+	ATGP8	Gypsy	LTR	8590	long	92	medium	1866508	chromoarm	568	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	13093725	13093990	AT5TE46585	.	-	ATDNA12T3_2	.	DNA	265	short	660	high	1875323	chromoarm	78	RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr5	13094682	13094994	AT5TE46590	.	-	ATCOPIA14	Copia	LTR	312	short	7	low	1876280	chromoarm	338	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	13095126	13095300	AT5TE46595	.	-	ATREP18	.	DNA	174	short	391	high	1876724	chromoarm	782	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	13095300	13095470	AT5TE46600	.	+	ATHAT1	HAT	DNA	170	short	105	medium	1876898	chromoarm	956	no-RdDM	no-CHH	.	.	.	.	.
Chr5	13095786	13096476	AT5TE46605	.	-	ATREP18	.	DNA	690	short	391	high	1877384	chromoarm	1442	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	13096887	13096207	-	transcript_id-"94b06aae-16cb-4afa-94c2-d7f2d99cabc6|3"
Chr5	13096918	13097930	AT5TE46610	.	-	VANDAL18NB	MuDR	DNA	1013	short	19	low	1878515	chromoarm	2573	.	.	LowExpressed	.	.	.	.
Chr5	13101535	13101558	AT5TE46620	.	+	ATREP11	Helitron	RC	23	tiny	841	high	1883133	chromoarm	6916	no-CHH	no-RdDM	.	.	.	.	.
Chr5	13101558	13102300	AT5TE46625	.	-	HELITRONY3	Helitron	RC	742	short	1399	high	1883156	chromoarm	6174	no-CHH	no-CHH	.	.	.	.	.
Chr5	13102300	13102351	AT5TE46630	.	+	ATREP11	Helitron	RC	51	tiny	841	high	1883898	chromoarm	6123	no-CHH	no-CHH	.	.	.	.	.
Chr5	13103677	13107090	AT5TE46635	.	+	Unassigned	.	Unassigned	3413	medium	.	low	1885275	chromoarm	1384	no-CHH	no-CHH	ExpressedAndAnnotated	13102435	13107297	+	transcript_id-"0f1ec54d-2fc8-4ab0-8dc9-125ed5fbb2e3|6"
Chr5	13111737	13112082	AT5TE46645	.	-	ATDNA12T3_2	.	DNA	346	short	660	high	1893334	chromoarm	519	.	.	.	.	.	.	.
Chr5	13112264	13112424	AT5TE46650	.	-	VANDAL3	MuDR	DNA	160	short	177	medium	1893862	chromoarm	1047	no-CHH	DCL3-RdDM	.	.	.	.	.
Chr5	13112557	13113661	AT5TE46655	.	-	VANDAL3	MuDR	DNA	1104	short	177	medium	1894155	chromoarm	1340	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	13113698	13113978	AT5TE46660	.	+	ATMU5	MuDR	DNA	280	short	24	low	1895296	chromoarm	2481	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	13114498	13114534	AT5TE46665	.	+	ATCOPIA97	Copia	LTR	36	tiny	10	low	1896096	chromoarm	3281	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	13114534	13117644	AT5TE46670	.	+	ATCOPIA35	Copia	LTR	3110	medium	22	low	1896132	chromoarm	3317	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	13117644	13117867	AT5TE46675	.	+	ATHILA4C	Gypsy	LTR	223	short	206	high	1899242	chromoarm	6427	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	13117873	13117931	AT5TE46680	.	-	ATHILA4C	Gypsy	LTR	58	tiny	206	high	1899471	chromoarm	6656	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	13117931	13128453	AT5TE46685	.	-	ATHILA4C	Gypsy	LTR	10522	long	206	high	1899529	chromoarm	6714	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	13120323	13119950	-	transcript_id-"0e8182f0-8d5f-4efe-8687-2db3ab66b8d3|8"
Chr5	13118172	13118276	AT5TE46690	.	+	ATHILA4C	Gypsy	LTR	104	short	206	high	1899770	chromoarm	6955	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	13126434	13126482	AT5TE46720	.	-	ATHILA4C	Gypsy	LTR	48	tiny	206	high	1908032	chromoarm	15217	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	13128454	13131095	AT5TE46725	.	+	ATCOPIA35	Copia	LTR	2641	medium	22	low	1910052	chromoarm	17237	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13129751	13129775	AT5TE46730	.	-	ATHILA4	Gypsy	LTR	24	tiny	250	high	1911349	chromoarm	18534	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	13129775	13130953	AT5TE46735	.	-	ATHILA4A	Gypsy	LTR	1178	short	310	high	1911373	chromoarm	18558	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13130953	13131119	AT5TE46740	.	+	ATCOPIA35	Copia	LTR	166	short	22	low	1912551	chromoarm	19736	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13131966	13133093	AT5TE46745	.	-	ATHILA4B_LTR	Gypsy	LTR	1127	short	143	medium	1913564	chromoarm	20749	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	13133093	13133146	AT5TE46750	.	-	ATHILA4C	Gypsy	LTR	53	tiny	206	high	1914691	chromoarm	21876	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	13133871	13133944	AT5TE46755	.	-	ATHILA0_I	Gypsy	LTR	73	tiny	138	medium	1915469	chromoarm	22654	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr5	13133944	13135657	AT5TE46760	.	-	ATHILA2	Gypsy	LTR	1713	short	413	high	1915542	chromoarm	22727	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	13135657	13137346	AT5TE46765	.	-	ATHILA4A	Gypsy	LTR	1689	short	310	high	1917255	chromoarm	24440	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	13137348	13137876	AT5TE46770	.	+	ATGP3	Gypsy	LTR	528	short	60	medium	1918946	chromoarm	26131	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	13139244	13139828	AT5TE46775	.	-	HELITRONY3	Helitron	RC	584	short	1399	high	1920842	chromoarm	28027	no-RdDM	no-CHH	.	.	.	.	.
Chr5	13139828	13140689	AT5TE46780	.	-	ATREP15	Helitron	RC	861	short	1003	high	1921426	chromoarm	28611	no-CHH	no-CHH	.	.	.	.	.
Chr5	13141049	13141112	AT5TE46785	.	+	ATCOPIA45	Copia	LTR	63	tiny	20	low	1922647	chromoarm	29832	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	13141112	13142242	AT5TE46790	.	+	ATCOPIA35	Copia	LTR	1130	short	22	low	1922710	chromoarm	29895	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	13142243	13144715	AT5TE46795	.	-	ATHILA4A	Gypsy	LTR	2472	medium	310	high	1923841	chromoarm	31026	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	13144715	13148925	AT5TE46800	.	-	ATHILA4	Gypsy	LTR	4210	medium	250	high	1926313	chromoarm	33498	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	13148931	13152793	AT5TE46805	.	+	ATCOPIA45	Copia	LTR	3862	medium	20	low	1930529	chromoarm	32727	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	13152793	13152874	AT5TE46810	.	+	ATCOPIA97	Copia	LTR	81	tiny	10	low	1934391	chromoarm	32646	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	13155143	13155542	AT5TE46815	.	-	ATHILA4A	Gypsy	LTR	399	short	310	high	1936741	chromoarm	29978	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	13155553	13156016	AT5TE46820	.	-	ATHILA8B	Gypsy	LTR	463	short	78	medium	1937151	chromoarm	29504	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	13156327	13155200	-	transcript_id-"15a1c1af-7eef-42a3-a4cb-1339d0803d7f|3"
Chr5	13156016	13156293	AT5TE46825	.	+	ATHILA8B	Gypsy	LTR	277	short	78	medium	1937614	chromoarm	29227	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	13156490	13156567	AT5TE46830	.	+	ATDNA12T3A	.	DNA	77	tiny	22	low	1938088	chromoarm	28953	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr5	13157053	13157309	AT5TE46835	.	+	ATGP10	Gypsy	LTR	256	short	165	medium	1938651	chromoarm	28211	no-RdDM	no-CHH	ExpressedAndAnnotated	13156635	13157779	+	transcript_id-"d63e33f6-6fde-4a61-baf7-85d681597683|4"
Chr5	13157309	13170365	AT5TE46840	.	+	ATGP10	Gypsy	LTR	13056	long	165	medium	1938907	chromoarm	15155	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	13156635	13157779	+	transcript_id-"d63e33f6-6fde-4a61-baf7-85d681597683|4"
Chr5	13162837	13163077	AT5TE46845	.	+	ATGP10	Gypsy	LTR	240	short	165	medium	1944435	chromoarm	22443	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	13163077	13166501	AT5TE46850	.	+	ATGP10	Gypsy	LTR	3424	medium	165	medium	1944675	chromoarm	19019	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	13166503	13169609	AT5TE46855	.	+	ATHILA8B	Gypsy	LTR	3106	medium	78	medium	1948101	chromoarm	15911	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr5	13170366	13180947	AT5TE46860	.	+	ATGP10	Gypsy	LTR	10581	long	165	medium	1951964	chromoarm	4573	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	13177457	13179605	AT5TE46865	.	-	ATHAT1	HAT	DNA	2148	medium	105	medium	1959055	chromoarm	5915	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	13180952	13181396	AT5TE46870	.	+	ATHILA8A	Gypsy	LTR	444	short	97	medium	1962550	chromoarm	4124	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	13181445	13180662	-	transcript_id-"8302bf10-3c9c-4e60-a3ee-8d82b19c210d|6"
Chr5	13181396	13181586	AT5TE46875	.	+	ATHATN3	HAT	DNA	190	short	70	medium	1962994	chromoarm	3934	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	13181591	13184435	AT5TE46880	.	-	ATMU1	MuDR	DNA	2844	medium	59	medium	1963189	chromoarm	1085	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	13184436	13184731	AT5TE46885	.	+	ATGP10	Gypsy	LTR	295	short	165	medium	1966034	chromoarm	789	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	13185351	13185538	AT5TE46890	.	+	ATGP10	Gypsy	LTR	187	short	165	medium	1966949	chromoarm	0	no-RdDM	no-CHH	.	.	.	.	.
Chr5	13187594	13188015	AT5TE46895	.	+	ATGP10	Gypsy	LTR	421	short	165	medium	1969192	chromoarm	0	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	13188575	13188980	AT5TE46900	.	-	ATMU2	MuDR	DNA	405	short	64	medium	1970173	chromoarm	629	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr5	13188999	13189352	AT5TE46905	.	+	ATHATN3	HAT	DNA	353	short	70	medium	1970597	chromoarm	1053	no-RdDM	no-CHH	.	.	.	.	.
Chr5	13189352	13192575	AT5TE46910	.	+	ATHILA8B	Gypsy	LTR	3223	medium	78	medium	1970950	chromoarm	1406	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	13192575	13192699	AT5TE46915	.	-	ATHILA8B	Gypsy	LTR	124	short	78	medium	1974173	chromoarm	3005	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	13192699	13192754	AT5TE46920	.	-	ATHILA8A	Gypsy	LTR	55	tiny	97	medium	1974297	chromoarm	2950	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	13193817	13194411	AT5TE46925	.	+	TAT1_ATH	Gypsy	LTR	594	short	87	medium	1975415	chromoarm	1293	no-RdDM	no-CHH	.	.	.	.	.
Chr5	13194798	13195335	AT5TE46930	.	+	ATLANTYS2	Gypsy	LTR	537	short	179	medium	1976396	chromoarm	369	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	13195419	13196083	AT5TE46935	.	-	ATREP15	Helitron	RC	664	short	1003	high	1977017	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	13196083	13196103	AT5TE46940	.	+	HELITRONY3	Helitron	RC	20	tiny	1399	high	1977681	chromoarm	31	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	13196103	13198570	AT5TE46945	.	-	ATREP10D	Helitron	RC	2467	medium	1295	high	1977701	chromoarm	0	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	13198570	13203016	AT5TE46950	.	-	ATREP3	Helitron	RC	4446	medium	1439	high	1980168	chromoarm	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	13203016	13203506	AT5TE46955	.	-	HELITRONY3	Helitron	RC	490	short	1399	high	1984614	chromoarm	0	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	13203507	13203856	AT5TE46960	.	-	ATREP3	Helitron	RC	350	short	1439	high	1985104	chromoarm	0	.	.	.	.	.	.	.
Chr5	13203856	13205138	AT5TE46965	.	+	ATREP6	Helitron	RC	1282	short	181	medium	1985454	chromoarm	15	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13205138	13219877	AT5TE46970	.	+	ARNOLD3	MuDR	DNA	14739	long	45	low	1986736	chromoarm	1297	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	13205313,13215160,13219720	13209065,13214555,13214555	+,-,-	transcript_id-"c642a7d8-7d9f-49d0-896f-ccb75e10c4b6|4",transcript_id-"c5ffffed-efaa-48fd-945a-e33694aa0136|6",transcript_id-"9e7a2044-5955-4c43-bd35-45503965a794|3"
Chr5	13219886	13220899	AT5TE46975	.	-	HELITRONY3	Helitron	RC	1013	short	1399	high	2001484	chromoarm	2233	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13220899	13222752	AT5TE46980	.	-	ARNOLDY1	MuDR	DNA	1853	short	237	high	2002497	chromoarm	380	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13222752	13224972	AT5TE46985	.	-	ATREP15	Helitron	RC	2220	medium	1003	high	2004350	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13224972	13225080	AT5TE46990	.	-	ATREP3	Helitron	RC	108	short	1439	high	2006570	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	13225080	13225181	AT5TE46995	.	-	HELITRON4	Helitron	RC	101	short	199	medium	2006678	chromoarm	0	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	13225244	13226055	AT5TE47000	.	+	ATHILA4B_LTR	Gypsy	LTR	811	short	143	medium	2006842	chromoarm	0	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	13226881	13227048	AT5TE47005	.	+	ATENSPM9	En-Spm	DNA	167	short	97	medium	2008479	chromoarm	1566	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	13227194	13227825	AT5TE47010	.	+	Unassigned	.	Unassigned	631	short	.	low	2008792	chromoarm	1879	no-CHH	no-CHH	.	.	.	.	.
Chr5	13228738	13230428	AT5TE47015	.	-	VANDAL21	MuDR	DNA	1690	short	64	medium	2010336	chromoarm	2962	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	13231548	13231669	AT5TE47020	.	-	VANDAL8	MuDR	DNA	121	short	123	medium	2013146	chromoarm	1721	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	13231669	13232072	AT5TE47025	.	+	ATREP2	Helitron	RC	403	short	164	medium	2013267	chromoarm	1318	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	13232085	13232130	AT5TE47030	.	+	ATREP2A	Helitron	RC	45	tiny	116	medium	2013683	chromoarm	1260	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr5	13232205	13232659	AT5TE47035	.	-	TAG3N1	HAT	DNA	454	short	97	medium	2013803	chromoarm	731	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	13233573	13233802	AT5TE47040	.	+	ATHILA6A	Gypsy	LTR	229	short	247	high	2015171	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	13238905	13239125	AT5TE47050	.	-	BRODYAGA1A	MuDR	DNA	220	short	586	high	2020503	chromoarm	187	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	13239347	13239589	AT5TE47055	.	-	ATMU2	MuDR	DNA	243	short	64	medium	2020944	chromoarm	628	.	.	.	.	.	.	.
Chr5	13241232	13241279	AT5TE47060	.	+	ATHPOGON3	Pogo	DNA	47	tiny	118	medium	2022830	chromoarm	2514	no-CHH	no-CHH	.	.	.	.	.
Chr5	13241279	13241992	AT5TE47065	.	+	ATREP10B	Helitron	RC	713	short	491	high	2022877	chromoarm	2561	no-CHH	no-CHH	.	.	.	.	.
Chr5	13243487	13243755	AT5TE47070	.	-	ATREP5	Helitron	RC	268	short	624	high	2025085	chromoarm	4769	no-CHH	no-CHH	.	.	.	.	.
Chr5	13243755	13244158	AT5TE47075	.	-	HELITRON1	Helitron	RC	403	short	130	medium	2025353	chromoarm	5037	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	13244158	13244390	AT5TE47080	.	-	HELITRON1	Helitron	RC	232	short	130	medium	2025756	chromoarm	5440	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	13244390	13252691	AT5TE47085	.	-	HELITRON1	Helitron	RC	8301	long	130	medium	2025988	chromoarm	5672	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	13252691	13252854	AT5TE47090	.	-	ARNOLDY1	MuDR	DNA	163	short	237	high	2034289	chromoarm	13973	no-CHH	no-CHH	.	.	.	.	.
Chr5	13252854	13252975	AT5TE47095	.	-	ATREP11	Helitron	RC	121	short	841	high	2034452	chromoarm	14136	no-CHH	no-CHH	.	.	.	.	.
Chr5	13253681	13258510	AT5TE47100	.	-	ATCOPIA15	Copia	LTR	4829	medium	14	low	2035279	chromoarm	14963	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	13258396,13258396,13258396	13253721,13256292,13256339	-,-,-	transcript_id-"132131f7-6233-41f0-8c02-6df69f09739c|3",transcript_id-"d320a4fd-36e7-4c64-85fd-1834175b100a|4",transcript_id-"4819e2c5-b2a3-49f0-aea5-3f20097aa805|10"
Chr5	13258797	13261020	AT5TE47105	.	-	VANDAL2	MuDR	DNA	2223	medium	43	low	2040395	chromoarm	20079	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr5	13258943	13259229	AT5TE47110	.	-	VANDAL2	MuDR	DNA	286	short	43	low	2040541	chromoarm	20225	RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	13261020	13272510	AT5TE47115	.	-	ATHILA6B	Gypsy	LTR	11490	long	134	medium	2042618	chromoarm	22302	no-RdDM	no-RdDM	ExpressedAndAnnotated	13263266,13262810	13261980,13261983	-,-	transcript_id-"2a7ba848-e43d-48b7-8e41-93a13b2cd21c|3",transcript_id-"2800b08f-04ff-4246-be5e-de1d3e0eab17|5"
Chr5	13272510	13284060	AT5TE47120	.	-	VANDAL2	MuDR	DNA	11550	long	43	low	2054108	chromoarm	27164	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	13284060	13284082	AT5TE47125	.	-	VANDAL2	MuDR	DNA	22	tiny	43	low	2065658	chromoarm	27142	no-RdDM	no-CHH	.	.	.	.	.
Chr5	13284711	13299273	AT5TE47130	.	-	VANDAL3	MuDR	DNA	14562	long	177	medium	2066309	chromoarm	11951	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	13289678	13289856	+	transcript_id-"759fb1fc-a277-466d-b3bb-9e0add1724bb|7"
Chr5	13299761	13299803	AT5TE47135	.	+	ATHILA6A	Gypsy	LTR	42	tiny	247	high	2081359	chromoarm	11421	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	13299803	13304979	AT5TE47140	.	+	ATHILA3	Gypsy	LTR	5176	long	243	high	2081401	chromoarm	6245	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	13303267	13303316	AT5TE47145	.	+	ATHILA3	Gypsy	LTR	49	tiny	243	high	2084865	chromoarm	7908	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	13304979	13305214	AT5TE47150	.	+	ATHILA0_I	Gypsy	LTR	235	short	138	medium	2086577	chromoarm	6010	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	13305654	13306278	AT5TE47155	.	+	ATHILA5	Gypsy	LTR	624	short	131	medium	2087252	chromoarm	4946	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr5	13306317	13309495	AT5TE47160	.	+	ATHILA3	Gypsy	LTR	3178	medium	243	high	2087915	chromoarm	1729	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	13306835,13306835	13307401,13308877	+,+	transcript_id-"a5a8b27d-9dc1-4d02-abd5-706bb3c385c6|6",transcript_id-"6dfdf428-9f81-46cf-a1ad-4b56ccd912d6|5"
Chr5	13309523	13309982	AT5TE47165	.	+	HELITRON1	Helitron	RC	459	short	130	medium	2091121	chromoarm	1242	no-RdDM	no-RdDM	ExpressedAndAnnotated	13310008,13310223	13309731,13309731	-,-	transcript_id-"fcf1380a-10ea-4741-b42f-563c10aa5be3|11",transcript_id-"7381b612-9fb8-425d-bb62-2ac40b68fc0e|35"
Chr5	13310034	13310253	AT5TE47170	.	-	ATENSPM6	En-Spm	DNA	219	short	151	medium	2091632	chromoarm	971	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	13309894	13310475	+	transcript_id-"c4e54b94-86af-46cf-a577-7479a0f0f936|3"
Chr5	13310279	13310435	AT5TE47175	.	+	HELITRON1	Helitron	RC	156	short	130	medium	2091877	chromoarm	789	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	13310445	13310772	AT5TE47180	.	+	ATHILA0_I	Gypsy	LTR	327	short	138	medium	2092043	chromoarm	452	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	13312948	13313050	AT5TE47185	.	+	ATREP1	Helitron	RC	102	short	498	high	2094546	chromoarm	1094	no-RdDM	no-CHH	.	.	.	.	.
Chr5	13313050	13313587	AT5TE47190	.	+	HELITRON4	Helitron	RC	537	short	199	medium	2094648	chromoarm	1196	no-CHH	no-CHH	.	.	.	.	.
Chr5	13313687	13317242	AT5TE47195	.	-	ATCOPIA95	Copia	LTR	3555	medium	72	medium	2095285	chromoarm	1833	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	13317243	13328540	AT5TE47200	.	-	ATHILA2	Gypsy	LTR	11297	long	413	high	2098841	chromoarm	3996	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	13320316,13319082,13323375	13318238,13318239,13322650	-,-,-	transcript_id-"68bae36d-90db-4453-b638-6d2652fd4c52|3",transcript_id-"689d00b0-457b-4ef3-b90f-1a111c189d15|7",transcript_id-"de7e3f93-f5d9-48a0-8c94-8af8a2953729|3"
Chr5	13328542	13331829	AT5TE47205	.	-	ATCOPIA95	Copia	LTR	3287	medium	72	medium	2110140	chromoarm	707	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	13331336	13331006	-	transcript_id-"e9e99c4d-459e-4206-a23a-e3bcadff3527|28"
Chr5	13335878	13336469	AT5TE47215	.	-	ATLANTYS3	Gypsy	LTR	591	short	142	medium	2117476	chromoarm	5	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	13337383	13337659	AT5TE47220	.	+	VANDAL6	MuDR	DNA	276	short	89	medium	2118981	chromoarm	726	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	13337890	13338174	AT5TE47225	.	+	VANDAL6	MuDR	DNA	284	short	89	medium	2119488	chromoarm	1233	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	13340009	13340103	AT5TE47230	.	-	ARNOLDY1	MuDR	DNA	94	tiny	237	high	2121607	chromoarm	3352	no-RdDM	no-CHH	.	.	.	.	.
Chr5	13340107	13340657	AT5TE47235	.	+	HELITRONY3	Helitron	RC	550	short	1399	high	2121705	chromoarm	3450	no-CHH	no-CHH	.	.	.	.	.
Chr5	13340657	13340791	AT5TE47240	.	-	ARNOLDY2	MuDR	DNA	134	short	288	high	2122255	chromoarm	4000	no-CHH	no-CHH	.	.	.	.	.
Chr5	13340801	13341769	AT5TE47245	.	-	ATGP7	Gypsy	LTR	968	short	47	low	2122399	chromoarm	4144	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	13341769	13341924	AT5TE47250	.	-	ATGP5	Gypsy	LTR	155	short	86	medium	2123367	chromoarm	5112	no-CHH	no-CHH	.	.	.	.	.
Chr5	13343242	13344245	AT5TE47255	.	+	ATREP19	.	DNA	1003	short	189	medium	2124840	chromoarm	6585	no-CHH	no-CHH	.	.	.	.	.
Chr5	13344245	13344360	AT5TE47260	.	-	ATREP10D	Helitron	RC	115	short	1295	high	2125843	chromoarm	7588	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	13344450	13344601	AT5TE47265	.	-	ATCOPIA28	Copia	LTR	151	short	81	medium	2126048	chromoarm	7793	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13344608	13347034	AT5TE47270	.	-	META1	Copia	LTR	2426	medium	138	medium	2126206	chromoarm	7517	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	13345795	13347620	AT5TE47275	.	-	ATCOPIA29	Copia	LTR	1825	short	19	low	2127393	chromoarm	6931	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	13349601	13350527	AT5TE47280	.	+	TA11	L1	LINE	926	short	157	medium	2131199	chromoarm	4024	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	13350527	13351841	AT5TE47285	.	+	ATLINE1_4	L1	LINE	1314	short	102	medium	2132125	chromoarm	2710	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	13351841	13352513	AT5TE47290	.	+	TA11	L1	LINE	672	short	157	medium	2133439	chromoarm	2038	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	13361943	13361966	AT5TE47330	.	+	ATREP11	Helitron	RC	23	tiny	841	high	2143541	chromoarm	566	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	13361966	13362097	AT5TE47335	.	-	ATREP11	Helitron	RC	131	short	841	high	2143564	chromoarm	589	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	13362097	13362823	AT5TE47340	.	+	ATREP11	Helitron	RC	726	short	841	high	2143695	chromoarm	720	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13362823	13363256	AT5TE47345	.	-	ATLINE1A	L1	LINE	433	short	289	high	2144421	chromoarm	680	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	13365962	13366508	AT5TE47355	.	-	HELITRONY1D	Helitron	RC	546	short	756	high	2147560	chromoarm	1687	no-CHH	no-CHH	.	.	.	.	.
Chr5	13367212	13368037	AT5TE47360	.	+	ATENSPM5	En-Spm	DNA	825	short	111	medium	2148810	chromoarm	2937	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13368037	13368658	AT5TE47365	.	-	ATREP11	Helitron	RC	621	short	841	high	2149635	chromoarm	3762	no-CHH	no-CHH	.	.	.	.	.
Chr5	13368658	13368746	AT5TE47370	.	-	HELITRONY1A	Helitron	RC	88	tiny	271	high	2150256	chromoarm	4383	no-CHH	no-CHH	.	.	.	.	.
Chr5	13368746	13368999	AT5TE47375	.	+	DT1	Mariner	DNA	253	short	123	medium	2150344	chromoarm	4471	no-CHH	no-CHH	.	.	.	.	.
Chr5	13368999	13369190	AT5TE47380	.	+	ATREP4	Helitron	RC	191	short	832	high	2150597	chromoarm	4724	no-CHH	no-CHH	.	.	.	.	.
Chr5	13369462	13371227	AT5TE47385	.	+	ATENSPM4	En-Spm	DNA	1765	short	50	medium	2151060	chromoarm	5187	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	13371227	13371832	AT5TE47390	.	-	ATGP1	Gypsy	LTR	605	short	144	medium	2152825	chromoarm	6952	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	13371832	13379652	AT5TE47395	.	-	ATGP1	Gypsy	LTR	7820	long	144	medium	2153430	chromoarm	7199	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	13379659	13382516	AT5TE47400	.	+	ATENSPM1	En-Spm	DNA	2857	medium	30	low	2161257	chromoarm	4335	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	13382516	13382569	AT5TE47405	.	+	ATENSPM1	En-Spm	DNA	53	tiny	30	low	2164114	chromoarm	4282	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	13382572	13382660	AT5TE47410	.	-	ATMU10	MuDR	DNA	88	tiny	87	medium	2164170	chromoarm	4191	no-RdDM	no-CHH	.	.	.	.	.
Chr5	13382667	13383119	AT5TE47415	.	+	ATMU10	MuDR	DNA	452	short	87	medium	2164265	chromoarm	3732	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	13383119	13383160	AT5TE47420	.	-	BRODYAGA1	MuDR	DNA	41	tiny	251	high	2164717	chromoarm	3691	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	13384746	13385449	AT5TE47425	.	-	ATLINE1_1	L1	LINE	703	short	61	medium	2166344	chromoarm	1402	no-RdDM	no-CHH	.	.	.	.	.
Chr5	13385449	13386414	AT5TE47430	.	+	ARNOLDY2	MuDR	DNA	965	short	288	high	2167047	chromoarm	437	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	13386414	13386585	AT5TE47435	.	+	HELITRONY3	Helitron	RC	171	short	1399	high	2168012	chromoarm	266	RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	13388631	13389035	AT5TE47440	.	-	ATREP11	Helitron	RC	404	short	841	high	2170229	chromoarm	1456	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	13390472	13391048	AT5TE47445	.	-	HELITRON2	Helitron	RC	576	short	194	medium	2172070	chromoarm	3297	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	13391410	13391948	AT5TE47450	.	-	HELITRON1	Helitron	RC	538	short	130	medium	2173008	chromoarm	4235	no-RdDM	no-CHH	.	.	.	.	.
Chr5	13392277	13392435	AT5TE47455	.	+	ATREP10D	Helitron	RC	158	short	1295	high	2173875	chromoarm	5102	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	13392435	13394306	AT5TE47460	.	+	HELITRONY1A	Helitron	RC	1871	short	271	high	2174033	chromoarm	5260	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	13394306	13394633	AT5TE47465	.	+	ATENSPM4	En-Spm	DNA	327	short	50	medium	2175904	chromoarm	7131	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	13394633	13395320	AT5TE47470	.	+	ATENSPM1	En-Spm	DNA	687	short	30	low	2176231	chromoarm	7458	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	13395327	13397991	AT5TE47475	.	+	ATHILA3	Gypsy	LTR	2664	medium	243	high	2176925	chromoarm	8152	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	13397994	13398038	AT5TE47480	.	+	ATHILA2	Gypsy	LTR	45	tiny	413	high	2179591	chromoarm	10818	.	.	.	.	.	.	.
Chr5	13398038	13399431	AT5TE47485	.	+	ATHILA2	Gypsy	LTR	1393	short	413	high	2179636	chromoarm	10863	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	13399431	13399521	AT5TE47490	.	+	ATHILA6A	Gypsy	LTR	90	tiny	247	high	2181029	chromoarm	12256	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	13399521	13399828	AT5TE47495	.	+	ATHILA6B	Gypsy	LTR	307	short	134	medium	2181119	chromoarm	12346	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	13399828	13405621	AT5TE47500	.	+	ATHILA2	Gypsy	LTR	5793	long	413	high	2181426	chromoarm	9323	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	13405626	13407187	AT5TE47505	.	+	ATHILA3	Gypsy	LTR	1561	short	243	high	2187224	chromoarm	7757	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	13406296	13406346	AT5TE47510	.	+	ATHILA3	Gypsy	LTR	50	tiny	243	high	2187894	chromoarm	8598	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	13407187	13410397	AT5TE47515	.	-	ATHILA0_I	Gypsy	LTR	3210	medium	138	medium	2188785	chromoarm	4547	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	13410397	13411114	AT5TE47520	.	+	ATENSPM5	En-Spm	DNA	717	short	111	medium	2191995	chromoarm	3830	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	13411114	13413394	AT5TE47525	.	+	ATENSPM6	En-Spm	DNA	2280	medium	151	medium	2192712	chromoarm	1550	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	13413394	13413478	AT5TE47530	.	+	ATENSPM6	En-Spm	DNA	84	tiny	151	medium	2194992	chromoarm	1466	no-RdDM	no-CHH	.	.	.	.	.
Chr5	13413478	13413513	AT5TE47535	.	+	ATENSPM6	En-Spm	DNA	35	tiny	151	medium	2195076	chromoarm	1431	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	13413816	13414531	AT5TE47540	.	-	ATREP10D	Helitron	RC	715	short	1295	high	2195414	chromoarm	413	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	13414531	13414569	AT5TE47545	.	+	ATREP15	Helitron	RC	38	tiny	1003	high	2196129	chromoarm	375	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	13417302	13418253	AT5TE47555	.	-	SIMPLEHAT1	HAT	DNA	951	short	56	medium	2198900	chromoarm	381	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	13424873	13424929	AT5TE47570	.	-	ATLINE1A	L1	LINE	56	tiny	289	high	2206471	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	13433287	13433592	AT5TE47600	.	+	ATHPOGON1	Pogo	DNA	305	short	174	medium	2214885	chromoarm	500	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13434693	13435022	AT5TE47605	.	+	ATHILA6A	Gypsy	LTR	329	short	247	high	2216291	chromoarm	0	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	13435163	13435320	AT5TE47610	.	-	ATREP6	Helitron	RC	157	short	181	medium	2216761	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	13435320	13435597	AT5TE47615	.	+	ATREP11	Helitron	RC	277	short	841	high	2216918	chromoarm	153	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	13435597	13437206	AT5TE47620	.	-	ATREP11	Helitron	RC	1609	short	841	high	2217195	chromoarm	430	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13437206	13437305	AT5TE47625	.	-	ATREP5	Helitron	RC	99	tiny	624	high	2218804	chromoarm	2039	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr5	13466389	13466570	AT5TE47730	.	-	ATLINE1A	L1	LINE	181	short	289	high	2247987	chromoarm	808	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	13467110	13467362	AT5TE47735	.	-	ATIS112A	Harbinger	DNA	252	short	173	medium	2248708	chromoarm	1529	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	13467362	13467389	AT5TE47740	.	-	ATLINE1_3A	L1	LINE	27	tiny	160	medium	2248960	chromoarm	1781	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	13467389	13467424	AT5TE47745	.	-	ATLINE2	L1	LINE	35	tiny	138	medium	2248987	chromoarm	1808	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	13467424	13471354	AT5TE47750	.	-	ATLINEIII	L1	LINE	3930	medium	196	medium	2249022	chromoarm	1843	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	13471680	13472449	AT5TE47755	.	-	ATIS112A	Harbinger	DNA	769	short	173	medium	2253278	chromoarm	2049	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	13472689	13471751	-	transcript_id-"6c2dc085-9245-43bf-b546-cdd51aa058a9|3"
Chr5	13472449	13472500	AT5TE47760	.	+	LIMPET1	MuDR	DNA	51	tiny	116	medium	2254047	chromoarm	1998	PolIV-and-RDR6-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	13472601	13472782	AT5TE47765	.	+	ATDNAI27T9A	MuDR	DNA	181	short	116	medium	2254199	chromoarm	1716	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	13472782	13472831	AT5TE47770	.	-	ATREP11	Helitron	RC	49	tiny	841	high	2254380	chromoarm	1667	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	13472831	13473901	AT5TE47775	.	+	ATREP11	Helitron	RC	1070	short	841	high	2254429	chromoarm	597	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13473901	13474232	AT5TE47780	.	+	ARNOLDY2	MuDR	DNA	331	short	288	high	2255499	chromoarm	266	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	13474232	13474304	AT5TE47785	.	+	ATREP4	Helitron	RC	72	tiny	832	high	2255830	chromoarm	194	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	13483744	13484079	AT5TE47820	.	-	HELITRON4	Helitron	RC	336	short	199	medium	2265341	chromoarm	526	.	.	.	.	.	.	.
Chr5	13484079	13484235	AT5TE47825	.	+	ATREP5	Helitron	RC	156	short	624	high	2265677	chromoarm	370	no-CHH	no-CHH	.	.	.	.	.
Chr5	13488098	13488136	AT5TE47835	.	-	ATREP10A	Helitron	RC	38	tiny	279	high	2269696	chromoarm	552	no-CHH	no-CHH	.	.	.	.	.
Chr5	13488136	13488297	AT5TE47840	.	-	HELITRONY3	Helitron	RC	161	short	1399	high	2269734	chromoarm	590	no-RdDM	no-CHH	.	.	.	.	.
Chr5	13488297	13489360	AT5TE47845	.	+	ATREP10D	Helitron	RC	1063	short	1295	high	2269895	chromoarm	617	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	13489360	13489458	AT5TE47850	.	+	ATREP3	Helitron	RC	98	tiny	1439	high	2270958	chromoarm	519	DCL3-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	13489458	13489717	AT5TE47855	.	+	HELITRONY3	Helitron	RC	259	short	1399	high	2271056	chromoarm	260	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	13491989	13492125	AT5TE47860	.	-	ATIS112A	Harbinger	DNA	136	short	173	medium	2273587	chromoarm	316	DCL3-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	13493426	13493578	AT5TE47865	.	+	ATMUNX1	MuDR	DNA	152	short	155	medium	2275024	chromoarm	1753	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	13494561	13494719	AT5TE47870	.	-	VANDAL21	MuDR	DNA	158	short	64	medium	2276159	chromoarm	2888	no-RdDM	no-CHH	ExpressedAndAnnotated	13494219,13494224	13494726,13494792	+,+	transcript_id-"d352f1a7-62a7-4b13-b0a1-a833fbb2522e|5",transcript_id-"96161fa7-c45e-4eaf-b413-386269b2a234|3"
Chr5	13494719	13498490	AT5TE47875	.	-	VANDAL21	MuDR	DNA	3771	medium	64	medium	2276317	chromoarm	3046	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	13495593	13497910	AT5TE47880	.	+	Unassigned	.	Unassigned	2317	medium	.	low	2277191	chromoarm	3920	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	13498511	13498532	AT5TE47885	.	-	ATREP15	Helitron	RC	21	tiny	1003	high	2280109	chromoarm	6838	no-CHH	no-RdDM	.	.	.	.	.
Chr5	13498532	13500304	AT5TE47890	.	-	ATREP15	Helitron	RC	1772	short	1003	high	2280130	chromoarm	6859	no-RdDM	no-CHH	.	.	.	.	.
Chr5	13500319	13511415	AT5TE47895	.	+	HELITRONY2	Helitron	RC	11096	long	198	medium	2281917	chromoarm	6471	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	13511415	13512254	AT5TE47900	.	-	VANDAL21	MuDR	DNA	839	short	64	medium	2293013	chromoarm	5632	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	13512254	13512571	AT5TE47905	.	-	ATREP11	Helitron	RC	317	short	841	high	2293852	chromoarm	5315	no-RdDM	no-CHH	.	.	.	.	.
Chr5	13512571	13512910	AT5TE47910	.	-	HELITRONY1B	Helitron	RC	339	short	414	high	2294169	chromoarm	4976	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	13512910	13512936	AT5TE47915	.	-	ATREP4	Helitron	RC	26	tiny	832	high	2294508	chromoarm	4950	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	13512936	13515871	AT5TE47920	.	+	ATREP4	Helitron	RC	2935	medium	832	high	2294534	chromoarm	2015	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13515871	13515970	AT5TE47925	.	-	ATREP15	Helitron	RC	99	tiny	1003	high	2297469	chromoarm	1916	no-RdDM	no-CHH	.	.	.	.	.
Chr5	13515970	13516048	AT5TE47930	.	+	ATREP3	Helitron	RC	78	tiny	1439	high	2297568	chromoarm	1838	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	13516490	13516836	AT5TE47935	.	-	HELITRONY3	Helitron	RC	346	short	1399	high	2298088	chromoarm	1050	no-RdDM	no-CHH	.	.	.	.	.
Chr5	13516836	13517844	AT5TE47940	.	-	HELITRONY1D	Helitron	RC	1008	short	756	high	2298434	chromoarm	42	no-CHH	no-CHH	.	.	.	.	.
Chr5	13517844	13517890	AT5TE47945	.	+	ATREP5	Helitron	RC	46	tiny	624	high	2299442	chromoarm	0	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr5	13519803	13519900	AT5TE47950	.	-	ATREP11	Helitron	RC	97	tiny	841	high	2301401	chromoarm	854	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	13519900	13520835	AT5TE47955	.	-	ATREP7	Helitron	RC	935	short	164	medium	2301498	chromoarm	951	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13520835	13520913	AT5TE47960	.	-	ATREP9	Helitron	RC	78	tiny	201	high	2302433	chromoarm	979	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	13520968	13521213	AT5TE47965	.	-	ATCOPIA5	Copia	LTR	245	short	16	low	2302566	chromoarm	679	no-CHH	no-CHH	.	.	.	.	.
Chr5	13521331	13521479	AT5TE47970	.	-	ATCOPIA21	Copia	LTR	148	short	14	low	2302929	chromoarm	413	no-CHH	no-CHH	.	.	.	.	.
Chr5	13521479	13521505	AT5TE47975	.	-	ATCOPIA21	Copia	LTR	26	tiny	14	low	2303077	chromoarm	387	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	13526166	13526317	AT5TE47985	.	-	ATHATN3	HAT	DNA	151	short	70	medium	2307764	chromoarm	896	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	13527661	13529511	AT5TE47990	.	-	TA11	L1	LINE	1850	short	157	medium	2309259	chromoarm	2391	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	13530458	13530499	AT5TE47995	.	-	TA11	L1	LINE	41	tiny	157	medium	2312056	chromoarm	5188	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	13532560	13532705	AT5TE48000	.	-	ATHATN6	HAT	DNA	145	short	43	low	2314158	chromoarm	7290	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	13532722	13534632	AT5TE48005	.	+	ATLINE2	L1	LINE	1910	short	138	medium	2314320	chromoarm	7452	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	13535122	13535367	AT5TE48010	.	+	ATLINEIII	L1	LINE	245	short	196	medium	2316720	chromoarm	9852	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	13535367	13536037	AT5TE48015	.	+	ATLINEIII	L1	LINE	670	short	196	medium	2316965	chromoarm	10097	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	13536038	13537860	AT5TE48020	.	+	ATHILA0_I	Gypsy	LTR	1822	short	138	medium	2317636	chromoarm	10768	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	13537891	13537916	AT5TE48025	.	+	ATHILA6B	Gypsy	LTR	25	tiny	134	medium	2319489	chromoarm	11426	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	13537916	13538987	AT5TE48030	.	+	ATHILA6A	Gypsy	LTR	1071	short	247	high	2319514	chromoarm	10355	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	13539080	13539522	AT5TE48035	.	+	ATHILA	Gypsy	LTR	442	short	198	medium	2320678	chromoarm	9820	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	13539522	13539779	AT5TE48040	.	+	ATHILA5	Gypsy	LTR	257	short	131	medium	2321120	chromoarm	9563	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	13539779	13543177	AT5TE48045	.	+	ATHILA3	Gypsy	LTR	3398	medium	243	high	2321377	chromoarm	6165	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	13543177	13543214	AT5TE48050	.	+	ATHILA3	Gypsy	LTR	37	tiny	243	high	2324775	chromoarm	6128	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	13543476	13543840	AT5TE48055	.	+	ATDNA12T3_2	.	DNA	364	short	660	high	2325074	chromoarm	5502	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13543997	13544231	AT5TE48060	.	+	ATLINE2	L1	LINE	234	short	138	medium	2325595	chromoarm	5111	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	13544401	13544988	AT5TE48065	.	-	HELITRONY1D	Helitron	RC	587	short	756	high	2325999	chromoarm	4354	no-CHH	no-CHH	.	.	.	.	.
Chr5	13544988	13545067	AT5TE48070	.	+	ATTIRTA1	Tc1	DNA	79	tiny	95	medium	2326586	chromoarm	4275	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	13545407	13546760	AT5TE48075	.	+	SIMPLEGUY1	Harbinger	DNA	1353	short	116	medium	2327005	chromoarm	2582	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13546760	13547008	AT5TE48080	.	-	HELITRONY3	Helitron	RC	248	short	1399	high	2328358	chromoarm	2334	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	13547008	13549254	AT5TE48085	.	+	ATREP5	Helitron	RC	2246	medium	624	high	2328606	chromoarm	88	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13549254	13549292	AT5TE48090	.	+	ATREP5	Helitron	RC	38	tiny	624	high	2330852	chromoarm	50	no-CHH	no-CHH	.	.	.	.	.
Chr5	13549292	13549342	AT5TE48095	.	+	ATREP3	Helitron	RC	50	tiny	1439	high	2330890	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	13549342	13549395	AT5TE48100	.	+	ATREP15	Helitron	RC	53	tiny	1003	high	2330940	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	13550559	13550581	AT5TE48105	.	+	RathE3_cons	.	RathE3_cons	22	tiny	104	medium	2332157	chromoarm	435	PolIV-and-RDR6-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	13550581	13550718	AT5TE48110	.	+	RathE3_cons	.	RathE3_cons	137	short	104	medium	2332179	chromoarm	457	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	13551537	13551594	AT5TE48115	.	-	ATREP10B	Helitron	RC	57	tiny	491	high	2333135	chromoarm	1413	DCL3-RdDM	no-RdDM	.	.	.	.	.
Chr5	13551594	13551780	AT5TE48120	.	-	HELITRONY3	Helitron	RC	186	short	1399	high	2333192	chromoarm	1470	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	13551780	13552530	AT5TE48125	.	-	ATREP1	Helitron	RC	750	short	498	high	2333378	chromoarm	1656	no-CHH	no-CHH	.	.	.	.	.
Chr5	13552530	13552693	AT5TE48130	.	+	ATREP15	Helitron	RC	163	short	1003	high	2334128	chromoarm	2406	no-CHH	no-CHH	.	.	.	.	.
Chr5	13554128	13554257	AT5TE48135	.	-	ATDNA12T3_2	.	DNA	129	short	660	high	2335726	chromoarm	4004	no-CHH	no-CHH	.	.	.	.	.
Chr5	13555266	13555376	AT5TE48140	.	+	ATLINEIII	L1	LINE	110	short	196	medium	2336864	chromoarm	5142	no-CHH	no-CHH	.	.	.	.	.
Chr5	13555381	13556340	AT5TE48145	.	+	ATHILA4D_LTR	Gypsy	LTR	959	short	106	medium	2336979	chromoarm	5257	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	13556340	13557819	AT5TE48150	.	+	ATLINE2	L1	LINE	1479	short	138	medium	2337938	chromoarm	6216	no-CHH	no-CHH	.	.	.	.	.
Chr5	13560866	13561403	AT5TE48160	.	+	ATCOPIA28	Copia	LTR	537	short	81	medium	2342464	chromoarm	10742	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	13561472	13561511	AT5TE48165	.	+	ATREP3	Helitron	RC	39	tiny	1439	high	2343070	chromoarm	11348	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	13561511	13562839	AT5TE48170	.	+	ATREP11	Helitron	RC	1328	short	841	high	2343109	chromoarm	11387	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13562839	13563820	AT5TE48175	.	+	ATCOPIA29	Copia	LTR	981	short	19	low	2344437	chromoarm	12715	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13563829	13563948	AT5TE48180	.	-	VANDAL6	MuDR	DNA	119	short	89	medium	2345427	chromoarm	13705	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	13563966	13564021	AT5TE48185	.	-	VANDAL6	MuDR	DNA	55	tiny	89	medium	2345564	chromoarm	13842	no-RdDM	no-CHH	.	.	.	.	.
Chr5	13564021	13573335	AT5TE48190	.	-	VANDAL6	MuDR	DNA	9314	long	89	medium	2345619	chromoarm	10964	no-RdDM	no-RdDM	ExpressedAndAnnotated	13566841,13566842,13566846,13566849	13569774,13569766,13569669,13567220	+,+,+,+	transcript_id-"702c3943-919e-44c9-8946-fca07bdf93bb|3",transcript_id-"be173a3a-64f9-4824-9b77-bd946143b769|3",transcript_id-"cff017e7-02e5-4cc4-841e-b9dfd80847a2|3",transcript_id-"54515ba0-ab49-4b89-b509-0be8ef8edd57|13"
Chr5	13568377	13570854	AT5TE48195	.	+	ATIS112A	Harbinger	DNA	2477	medium	173	medium	2349975	chromoarm	13445	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	13566841,13566842,13566846	13569774,13569766,13569669	+,+,+	transcript_id-"702c3943-919e-44c9-8946-fca07bdf93bb|3",transcript_id-"be173a3a-64f9-4824-9b77-bd946143b769|3",transcript_id-"cff017e7-02e5-4cc4-841e-b9dfd80847a2|3"
Chr5	13570854	13570895	AT5TE48200	.	-	VANDAL17	MuDR	DNA	41	tiny	178	medium	2352452	chromoarm	13404	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13573506	13576870	AT5TE48205	.	-	ATHAT7	HAT	DNA	3364	medium	20	low	2355104	chromoarm	7429	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	13577504	13577672	AT5TE48210	.	-	ATENSPM7	En-Spm	DNA	168	short	74	medium	2359102	chromoarm	6627	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	13577672	13578323	AT5TE48215	.	-	VANDAL6	MuDR	DNA	651	short	89	medium	2359270	chromoarm	5976	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	13578157	13577076	-	transcript_id-"828902d5-ed88-4101-bb6d-7d94213c97dc|3"
Chr5	13578344	13579267	AT5TE48220	.	+	ATCOPIA29	Copia	LTR	923	short	19	low	2359942	chromoarm	5032	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	13579267	13579466	AT5TE48225	.	+	HELITRONY1A	Helitron	RC	199	short	271	high	2360865	chromoarm	4833	no-CHH	no-CHH	.	.	.	.	.
Chr5	13579466	13579614	AT5TE48230	.	-	HELITRONY1D	Helitron	RC	148	short	756	high	2361064	chromoarm	4685	no-CHH	no-CHH	.	.	.	.	.
Chr5	13579897	13580288	AT5TE48235	.	+	ARNOLDY2	MuDR	DNA	391	short	288	high	2361495	chromoarm	4011	no-CHH	no-CHH	.	.	.	.	.
Chr5	13580288	13581015	AT5TE48240	.	+	HELITRONY1B	Helitron	RC	727	short	414	high	2361886	chromoarm	3284	no-CHH	no-CHH	.	.	.	.	.
Chr5	13581218	13581452	AT5TE48245	.	-	ATREP11	Helitron	RC	234	short	841	high	2362816	chromoarm	2847	no-CHH	no-CHH	.	.	.	.	.
Chr5	13581452	13582870	AT5TE48250	.	+	ATREP4	Helitron	RC	1418	short	832	high	2363050	chromoarm	1429	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	13582870	13583204	AT5TE48255	.	+	HELITRONY1D	Helitron	RC	334	short	756	high	2364468	chromoarm	1095	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	13583420	13583869	AT5TE48260	.	+	HELITRON2	Helitron	RC	449	short	194	medium	2365018	chromoarm	430	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	13591458	13591522	AT5TE48290	.	+	ATDNA2T9C	MuDR	DNA	64	tiny	242	high	2373056	chromoarm	276	no-CHH	no-CHH	.	.	.	.	.
Chr5	13591522	13592137	AT5TE48295	.	+	ATREP9	Helitron	RC	615	short	201	high	2373120	chromoarm	119	no-CHH	no-CHH	.	.	.	.	.
Chr5	13602383	13603428	AT5TE48330	.	-	ATREP11	Helitron	RC	1045	short	841	high	2383981	chromoarm	143	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13603428	13603476	AT5TE48335	.	-	ATREP11	Helitron	RC	48	tiny	841	high	2385026	chromoarm	800	no-RdDM	no-CHH	.	.	.	.	.
Chr5	13604975	13605011	AT5TE48340	.	+	BRODYAGA1A	MuDR	DNA	36	tiny	586	high	2386573	chromoarm	249	no-CHH	no-RdDM	.	.	.	.	.
Chr5	13605011	13605492	AT5TE48345	.	+	ATREP3	Helitron	RC	481	short	1439	high	2386609	chromoarm	285	no-CHH	no-CHH	.	.	.	.	.
Chr5	13605492	13605850	AT5TE48350	.	+	HELITRONY1B	Helitron	RC	358	short	414	high	2387090	chromoarm	766	no-CHH	no-CHH	.	.	.	.	.
Chr5	13605850	13606071	AT5TE48355	.	-	HELITRONY1D	Helitron	RC	221	short	756	high	2387448	chromoarm	1124	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	13606078	13608149	AT5TE48360	.	-	HELITRONY1D	Helitron	RC	2071	medium	756	high	2387676	chromoarm	1352	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13608149	13608834	AT5TE48365	.	-	ATREP5	Helitron	RC	685	short	624	high	2389747	chromoarm	3423	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13608834	13609020	AT5TE48370	.	+	HELITRONY3	Helitron	RC	186	short	1399	high	2390432	chromoarm	4108	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	13609020	13609044	AT5TE48375	.	+	ATREP4	Helitron	RC	24	tiny	832	high	2390618	chromoarm	4294	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr5	13612930	13613614	AT5TE48385	.	-	ATREP10D	Helitron	RC	684	short	1295	high	2394528	chromoarm	8204	no-CHH	no-CHH	.	.	.	.	.
Chr5	13613614	13613910	AT5TE48390	.	+	ATLINE1_3A	L1	LINE	296	short	160	medium	2395212	chromoarm	8888	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13614461	13614915	AT5TE48395	.	+	BRODYAGA1A	MuDR	DNA	454	short	586	high	2396059	chromoarm	9735	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13614915	13614938	AT5TE48400	.	+	ATLINE1A	L1	LINE	23	tiny	289	high	2396513	chromoarm	10189	no-CHH	no-CHH	.	.	.	.	.
Chr5	13616899	13616997	AT5TE48405	.	+	ATREP10A	Helitron	RC	98	tiny	279	high	2398497	chromoarm	12173	no-CHH	no-CHH	.	.	.	.	.
Chr5	13616997	13619950	AT5TE48410	.	-	ATREP4	Helitron	RC	2953	medium	832	high	2398595	chromoarm	12271	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13619950	13621994	AT5TE48415	.	-	ATREP5	Helitron	RC	2044	medium	624	high	2401548	chromoarm	12938	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	13621994	13622158	AT5TE48420	.	-	ATREP5	Helitron	RC	164	short	624	high	2403592	chromoarm	12774	no-CHH	no-CHH	.	.	.	.	.
Chr5	13622158	13622194	AT5TE48425	.	+	ATREP5	Helitron	RC	36	tiny	624	high	2403756	chromoarm	12738	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr5	13622194	13622220	AT5TE48430	.	-	ATREP4	Helitron	RC	26	tiny	832	high	2403792	chromoarm	12712	no-CHH	no-CHH	.	.	.	.	.
Chr5	13622220	13622420	AT5TE48435	.	+	ATREP3	Helitron	RC	200	short	1439	high	2403818	chromoarm	12512	no-CHH	no-CHH	.	.	.	.	.
Chr5	13622952	13623290	AT5TE48440	.	-	ATTIR16T3A	.	DNA	338	short	106	medium	2404550	chromoarm	11642	no-RdDM	no-CHH	.	.	.	.	.
Chr5	13623636	13623708	AT5TE48445	.	+	ATLINE1A	L1	LINE	72	tiny	289	high	2405234	chromoarm	11224	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13623759	13623889	AT5TE48450	.	+	RathE1_cons	.	RathE1_cons	130	short	213	high	2405357	chromoarm	11043	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	13626013	13626163	AT5TE48455	.	+	ATDNAI27T9A	MuDR	DNA	150	short	116	medium	2407611	chromoarm	8769	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	13626399	13627932	AT5TE48460	.	+	ATHILA5	Gypsy	LTR	1533	short	131	medium	2407997	chromoarm	7000	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	13627932	13628053	AT5TE48465	.	+	ATHILA6B	Gypsy	LTR	121	short	134	medium	2409530	chromoarm	6879	no-CHH	no-CHH	.	.	.	.	.
Chr5	13628130	13628184	AT5TE48470	.	+	HELITRONY3	Helitron	RC	54	tiny	1399	high	2409728	chromoarm	6748	no-CHH	no-CHH	.	.	.	.	.
Chr5	13628187	13628336	AT5TE48475	.	+	ATREP15	Helitron	RC	149	short	1003	high	2409785	chromoarm	6596	no-CHH	no-CHH	.	.	.	.	.
Chr5	13628336	13629768	AT5TE48480	.	-	ARNOLDY1	MuDR	DNA	1432	short	237	high	2409934	chromoarm	5164	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13629768	13630000	AT5TE48485	.	+	ARNOLDY2	MuDR	DNA	232	short	288	high	2411366	chromoarm	4932	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13630920	13631205	AT5TE48490	.	-	HELITRONY3	Helitron	RC	285	short	1399	high	2412518	chromoarm	3727	no-RdDM	no-CHH	.	.	.	.	.
Chr5	13631205	13631225	AT5TE48495	.	+	HELITRONY1E	Helitron	RC	20	tiny	447	high	2412803	chromoarm	3707	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	13631225	13632099	AT5TE48500	.	-	HELITRONY1E	Helitron	RC	874	short	447	high	2412823	chromoarm	2833	no-CHH	no-CHH	.	.	.	.	.
Chr5	13632099	13633625	AT5TE48505	.	-	HELITRONY3	Helitron	RC	1526	short	1399	high	2413697	chromoarm	1307	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13634130	13634420	AT5TE48510	.	-	ATREP10A	Helitron	RC	290	short	279	high	2415728	chromoarm	512	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	13638453	13638525	AT5TE48520	.	+	ATREP10C	Helitron	RC	72	tiny	123	medium	2420051	chromoarm	391	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	13639049	13639139	AT5TE48525	.	-	ATREP7	Helitron	RC	90	tiny	164	medium	2420647	chromoarm	987	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	13640550	13640606	AT5TE48530	.	-	ATLINE1_5	L1	LINE	56	tiny	91	medium	2422148	chromoarm	2488	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	13640606	13641824	AT5TE48535	.	-	TA11	L1	LINE	1218	short	157	medium	2422204	chromoarm	2544	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr5	13641824	13643195	AT5TE48540	.	-	ATLINE1_5	L1	LINE	1371	short	91	medium	2423422	chromoarm	3762	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	13643195	13643259	AT5TE48545	.	-	TA11	L1	LINE	64	tiny	157	medium	2424793	chromoarm	5133	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	13644713	13651105	AT5TE48550	.	-	ATLINE1_2	L1	LINE	6392	long	41	low	2426311	chromoarm	6651	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	13647427,13647237	13646565,13646621	-,-	transcript_id-"e73641d0-8734-4123-8cbe-361375464940|3",transcript_id-"820d4c04-647f-4e89-b725-a44d1b54d76a|5"
Chr5	13651126	13651962	AT5TE48555	.	-	ATREP7	Helitron	RC	836	short	164	medium	2432724	chromoarm	10114	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	13652792	13651454	-	transcript_id-"b5cb55b3-a636-47e0-908f-7e2e5617d451|7"
Chr5	13652801	13653055	AT5TE48560	.	-	ATREP15	Helitron	RC	255	short	1003	high	2434398	chromoarm	9021	.	.	LowExpressed	.	.	.	.
Chr5	13653055	13654022	AT5TE48565	.	+	ATREP15	Helitron	RC	967	short	1003	high	2434653	chromoarm	8054	no-CHH	no-CHH	.	.	.	.	.
Chr5	13654022	13654356	AT5TE48570	.	+	ATREP15	Helitron	RC	334	short	1003	high	2435620	chromoarm	7720	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	13654356	13654577	AT5TE48575	.	-	ATREP10D	Helitron	RC	221	short	1295	high	2435954	chromoarm	7499	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	13654577	13655121	AT5TE48580	.	+	ATREP1	Helitron	RC	544	short	498	high	2436175	chromoarm	6955	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	13655121	13655176	AT5TE48585	.	+	ATREP3	Helitron	RC	55	tiny	1439	high	2436719	chromoarm	6900	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	13655246	13656014	AT5TE48590	.	+	VANDAL16	MuDR	DNA	768	short	42	low	2436844	chromoarm	6062	no-CHH	no-CHH	ExpressedAndAnnotated	13656275,13656275	13655270,13655420	-,-	transcript_id-"b1547432-5c87-4abd-a738-778fa700e271|4",transcript_id-"624c13d2-2ba3-42aa-8faf-d7e6ddf3de27|3"
Chr5	13656280	13657143	AT5TE48595	.	-	ATGP1	Gypsy	LTR	863	short	144	medium	2437878	chromoarm	4933	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	13657147	13657328	AT5TE48600	.	-	ATREP7	Helitron	RC	181	short	164	medium	2438745	chromoarm	4748	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13658968	13660871	AT5TE48605	.	+	VANDAL9	MuDR	DNA	1903	short	43	low	2440566	chromoarm	1205	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	13661027	13661725	AT5TE48610	.	+	ATREP15	Helitron	RC	698	short	1003	high	2442625	chromoarm	351	no-CHH	no-CHH	.	.	.	.	.
Chr5	13666128	13666347	AT5TE48620	.	-	BRODYAGA1A	MuDR	DNA	219	short	586	high	2447726	chromoarm	393	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	13676203	13676253	AT5TE48660	.	+	ATREP11	Helitron	RC	50	tiny	841	high	2457801	chromoarm	1657	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr5	13676253	13676439	AT5TE48665	.	+	ATREP10D	Helitron	RC	186	short	1295	high	2457851	chromoarm	1707	no-CHH	no-CHH	.	.	.	.	.
Chr5	13676440	13677931	AT5TE48670	.	+	ATREP10B	Helitron	RC	1491	short	491	high	2458038	chromoarm	1894	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13678715	13678815	AT5TE48675	.	-	ATREP2	Helitron	RC	101	short	164	medium	2460312	chromoarm	3660	.	.	.	.	.	.	.
Chr5	13678815	13680969	AT5TE48680	.	+	ATREP10D	Helitron	RC	2154	medium	1295	high	2460413	chromoarm	1506	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13681846	13682047	AT5TE48685	.	-	ATREP6	Helitron	RC	202	short	181	medium	2463443	chromoarm	428	.	.	.	.	.	.	.
Chr5	13682047	13682554	AT5TE48690	.	+	ATREP10A	Helitron	RC	507	short	279	high	2463645	chromoarm	0	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	13682555	13682593	AT5TE48695	.	+	ATREP5	Helitron	RC	39	tiny	624	high	2464152	chromoarm	0	.	.	LowExpressed	.	.	.	.
Chr5	13687855	13687945	AT5TE48705	.	+	HELITRONY1E	Helitron	RC	90	tiny	447	high	2469453	chromoarm	529	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	13687945	13688513	AT5TE48710	.	-	ATREP10D	Helitron	RC	568	short	1295	high	2469543	chromoarm	619	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	13688513	13689423	AT5TE48715	.	+	ATREP15	Helitron	RC	910	short	1003	high	2470111	chromoarm	14	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	13689423	13689704	AT5TE48720	.	+	HELITRONY1E	Helitron	RC	281	short	447	high	2471021	chromoarm	0	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	13690360	13691229	AT5TE48725	.	+	ATIS112A	Harbinger	DNA	869	short	173	medium	2471958	chromoarm	139	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	13691229	13691408	AT5TE48730	.	+	VANDAL17	MuDR	DNA	179	short	178	medium	2472827	chromoarm	1008	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13694776	13698610	AT5TE48740	.	+	ATLINE1_4	L1	LINE	3834	medium	102	medium	2476374	chromoarm	1219	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	13700276	13700633	AT5TE48745	.	+	ATREP4	Helitron	RC	357	short	832	high	2481874	chromoarm	240	no-CHH	no-CHH	.	.	.	.	.
Chr5	13700633	13701231	AT5TE48750	.	-	TNAT1A	.	DNA	598	short	162	medium	2482231	chromoarm	164	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	13701231	13701274	AT5TE48755	.	+	BRODYAGA1A	MuDR	DNA	43	tiny	586	high	2482829	chromoarm	121	no-CHH	no-CHH	.	.	.	.	.
Chr5	13703288	13703431	AT5TE48760	.	-	RathE1_cons	.	RathE1_cons	143	short	213	high	2484886	chromoarm	363	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13703431	13704886	AT5TE48765	.	-	ATREP7	Helitron	RC	1455	short	164	medium	2485029	chromoarm	506	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13704886	13705760	AT5TE48770	.	+	HELITRONY1D	Helitron	RC	874	short	756	high	2486484	chromoarm	1323	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	13705760	13706366	AT5TE48775	.	-	HELITRONY1C	Helitron	RC	606	short	120	medium	2487358	chromoarm	717	no-CHH	no-CHH	.	.	.	.	.
Chr5	13706366	13706844	AT5TE48780	.	-	ATREP9	Helitron	RC	478	short	201	high	2487964	chromoarm	239	no-CHH	no-CHH	.	.	.	.	.
Chr5	13706844	13706878	AT5TE48785	.	-	AT9TSD1	MuDR	DNA	34	tiny	55	medium	2488442	chromoarm	205	no-CHH	no-CHH	.	.	.	.	.
Chr5	13706878	13706939	AT5TE48790	.	+	ATMUN1	MuDR	DNA	61	tiny	107	medium	2488476	chromoarm	144	no-CHH	no-CHH	.	.	.	.	.
Chr5	13709442	13709564	AT5TE48795	.	-	ATTIR16T3A	.	DNA	122	short	106	medium	2491040	chromoarm	531	no-CHH	no-CHH	.	.	.	.	.
Chr5	13712477	13712674	AT5TE48805	.	-	ATREP3	Helitron	RC	197	short	1439	high	2494075	chromoarm	285	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13712674	13713251	AT5TE48810	.	+	ATDNA2T9C	MuDR	DNA	577	short	242	high	2494272	chromoarm	482	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13713254	13713284	AT5TE48815	.	+	ARNOLDY1	MuDR	DNA	30	tiny	237	high	2494852	chromoarm	1062	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	13713503	13718031	AT5TE48820	.	+	ATLINE1_6	L1	LINE	4528	medium	129	medium	2495101	chromoarm	1311	no-RdDM	no-RdDM	ExpressedAndAnnotated	13713279	13719300	+	transcript_id-"34a70e05-4cb5-4e5f-8491-fd4decb976bc|4"
Chr5	13719210	13720508	AT5TE48825	.	-	ATREP4	Helitron	RC	1298	short	832	high	2500808	chromoarm	1628	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	13720508	13721548	AT5TE48830	.	+	ATREP15	Helitron	RC	1040	short	1003	high	2502106	chromoarm	588	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13721548	13721742	AT5TE48835	.	+	ATREP3	Helitron	RC	194	short	1439	high	2503146	chromoarm	394	no-CHH	no-CHH	.	.	.	.	.
Chr5	13721742	13721811	AT5TE48840	.	-	ATREP11	Helitron	RC	69	tiny	841	high	2503340	chromoarm	325	no-CHH	no-CHH	.	.	.	.	.
Chr5	13722879	13723018	AT5TE48845	.	+	ATREP9	Helitron	RC	139	short	201	high	2504477	chromoarm	0	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13723019	13723485	AT5TE48850	.	+	ATREP7	Helitron	RC	467	short	164	medium	2504616	chromoarm	25	.	.	.	.	.	.	.
Chr5	13723783	13723923	AT5TE48855	.	+	ATREP9	Helitron	RC	140	short	201	high	2505381	chromoarm	790	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	13723923	13724328	AT5TE48860	.	+	ATREP7	Helitron	RC	405	short	164	medium	2505521	chromoarm	930	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13724328	13725347	AT5TE48865	.	+	ATREP17	MuDR	DNA	1019	short	34	low	2505926	chromoarm	1335	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13725363	13725797	AT5TE48870	.	-	HELITRONY1E	Helitron	RC	434	short	447	high	2506961	chromoarm	1009	no-CHH	no-CHH	.	.	.	.	.
Chr5	13726018	13726063	AT5TE48875	.	+	ATREP17	MuDR	DNA	45	tiny	34	low	2507616	chromoarm	743	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	13726063	13726315	AT5TE48880	.	+	ATREP17	MuDR	DNA	252	short	34	low	2507661	chromoarm	491	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13726319	13726523	AT5TE48885	.	-	HELITRON1	Helitron	RC	205	short	130	medium	2507916	chromoarm	283	.	.	.	.	.	.	.
Chr5	13727835	13728011	AT5TE48890	.	-	ATREP11A	Helitron	RC	176	short	95	medium	2509433	chromoarm	106	no-CHH	no-CHH	.	.	.	.	.
Chr5	13728011	13731189	AT5TE48895	.	-	ATREP4	Helitron	RC	3178	medium	832	high	2509609	chromoarm	282	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13731970	13732036	AT5TE48900	.	-	ARNOLDY1	MuDR	DNA	66	tiny	237	high	2513568	chromoarm	4241	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	13732061	13732347	AT5TE48905	.	+	SIMPLEHAT2	HAT	DNA	287	short	73	medium	2513658	chromoarm	4331	.	.	.	.	.	.	.
Chr5	13733029	13733058	AT5TE48910	.	+	ATREP10D	Helitron	RC	29	tiny	1295	high	2514627	chromoarm	5300	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	13733058	13733423	AT5TE48915	.	+	ATREP3	Helitron	RC	365	short	1439	high	2514656	chromoarm	5329	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13733423	13734920	AT5TE48920	.	+	ATREP1	Helitron	RC	1497	short	498	high	2515021	chromoarm	5694	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13735379	13735724	AT5TE48925	.	+	ATREP15	Helitron	RC	345	short	1003	high	2516977	chromoarm	6733	no-RdDM	no-CHH	.	.	.	.	.
Chr5	13736029	13741129	AT5TE48930	.	-	ATCOPIA24	Copia	LTR	5100	long	27	low	2517627	chromoarm	1328	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	13740908	13738858	-	transcript_id-"b343fb50-a7bf-4317-a59e-e2abde7d0458|3"
Chr5	13748584	13748941	AT5TE48960	.	-	ATHATN1	HAT	DNA	357	short	69	medium	2530182	chromoarm	1120	no-CHH	no-CHH	.	.	.	.	.
Chr5	13753893	13754363	AT5TE48970	.	+	HELITRONY3	Helitron	RC	470	short	1399	high	2535491	chromoarm	510	no-CHH	no-CHH	.	.	.	.	.
Chr5	13754363	13754460	AT5TE48975	.	-	ATHATN6	HAT	DNA	97	tiny	43	low	2535961	chromoarm	980	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13756611	13757514	AT5TE48980	.	-	ATMU11	MuDR	DNA	903	short	20	low	2538209	chromoarm	3228	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	13757515	13757603	AT5TE48985	.	-	ATMU1	MuDR	DNA	89	tiny	59	medium	2539112	chromoarm	4131	.	.	LowExpressed	.	.	.	.
Chr5	13757932	13758142	AT5TE48990	.	-	ATMU10	MuDR	DNA	210	short	87	medium	2539530	chromoarm	3837	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	13759629	13759731	AT5TE48995	.	-	RathE1_cons	.	RathE1_cons	102	short	213	high	2541227	chromoarm	2248	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13760801	13761106	AT5TE49000	.	-	ATREP19	.	DNA	305	short	189	medium	2542399	chromoarm	873	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13761106	13761230	AT5TE49005	.	+	RathE3_cons	.	RathE3_cons	124	short	104	medium	2542704	chromoarm	749	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13764451	13764978	AT5TE49015	.	-	ATHATN5	HAT	DNA	527	short	42	low	2546049	chromoarm	438	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	13764978	13765004	AT5TE49020	.	+	ATREP10	Helitron	RC	26	tiny	63	medium	2546576	chromoarm	412	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr5	13767976	13768217	AT5TE49030	.	-	HELITRONY1A	Helitron	RC	241	short	271	high	2549574	chromoarm	208	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	13772849	13772882	AT5TE49040	.	+	ATMU11	MuDR	DNA	33	tiny	20	low	2554447	chromoarm	1137	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	13772882	13773255	AT5TE49045	.	+	ATMU11	MuDR	DNA	373	short	20	low	2554480	chromoarm	1170	no-CHH	no-CHH	.	.	.	.	.
Chr5	13773798	13774113	AT5TE49050	.	+	ATDNA12T3_2	.	DNA	315	short	660	high	2555396	chromoarm	2086	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13774113	13774191	AT5TE49055	.	+	HELITRONY1C	Helitron	RC	78	tiny	120	medium	2555711	chromoarm	2401	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13774191	13775153	AT5TE49060	.	+	ATREP15	Helitron	RC	962	short	1003	high	2555789	chromoarm	2479	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	13777168	13778212	AT5TE49065	.	+	TAG2	HAT	DNA	1044	short	86	medium	2558766	chromoarm	5456	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	13779522	13780111	AT5TE49070	.	+	TAT1_ATH	Gypsy	LTR	589	short	87	medium	2561120	chromoarm	5135	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	13780659	13783121	AT5TE49075	.	+	ATLANTYS1	Gypsy	LTR	2462	medium	153	medium	2562257	chromoarm	2125	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	13783136	13784773	AT5TE49080	.	+	ATLANTYS2	Gypsy	LTR	1637	short	179	medium	2564734	chromoarm	473	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	13786534	13786641	AT5TE49085	.	+	ATREP7	Helitron	RC	107	short	164	medium	2568132	chromoarm	254	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13786641	13787337	AT5TE49090	.	+	ATREP4	Helitron	RC	696	short	832	high	2568239	chromoarm	361	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13791005	13793988	AT5TE49100	.	+	ATENSPM5	En-Spm	DNA	2983	medium	111	medium	2572603	chromoarm	1660	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	13793988	13795206	AT5TE49105	.	+	ATENSPM6	En-Spm	DNA	1218	short	151	medium	2575586	chromoarm	4643	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	13795206	13795761	AT5TE49110	.	-	VANDAL21	MuDR	DNA	555	short	64	medium	2576804	chromoarm	5861	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	13796293	13796328	AT5TE49115	.	-	ATLINE1_4	L1	LINE	35	tiny	102	medium	2577891	chromoarm	6948	no-CHH	no-CHH	.	.	.	.	.
Chr5	13796328	13796839	AT5TE49120	.	-	ATLINE1_5	L1	LINE	511	short	91	medium	2577926	chromoarm	6983	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13797562	13797758	AT5TE49125	.	+	ATHATN7	HAT	DNA	196	short	71	medium	2579160	chromoarm	8217	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	13798311	13801412	AT5TE49130	.	+	ATHAT3	HAT	DNA	3101	medium	23	low	2579909	chromoarm	8966	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	13801412	13801516	AT5TE49135	.	-	ATREP10B	Helitron	RC	104	short	491	high	2583010	chromoarm	12067	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	13801526	13802147	AT5TE49140	.	-	TNAT1A	.	DNA	621	short	162	medium	2583124	chromoarm	12181	no-RdDM	no-CHH	.	.	.	.	.
Chr5	13802147	13802844	AT5TE49145	.	+	HELITRONY1E	Helitron	RC	697	short	447	high	2583745	chromoarm	12802	no-CHH	no-CHH	.	.	.	.	.
Chr5	13802844	13804021	AT5TE49150	.	-	ATGP1	Gypsy	LTR	1177	short	144	medium	2584442	chromoarm	13499	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13804857	13805892	AT5TE49155	.	+	ATREP5	Helitron	RC	1035	short	624	high	2586455	chromoarm	13613	no-CHH	no-CHH	.	.	.	.	.
Chr5	13806095	13806855	AT5TE49160	.	-	ATREP1	Helitron	RC	760	short	498	high	2587693	chromoarm	12650	no-CHH	no-CHH	.	.	.	.	.
Chr5	13806855	13807155	AT5TE49165	.	+	ATREP4	Helitron	RC	300	short	832	high	2588453	chromoarm	12350	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	13808027	13808101	AT5TE49170	.	+	ATGP8	Gypsy	LTR	74	tiny	92	medium	2589625	chromoarm	11404	no-CHH	no-CHH	.	.	.	.	.
Chr5	13809167	13809846	AT5TE49175	.	+	ATGP8	Gypsy	LTR	679	short	92	medium	2590765	chromoarm	9659	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	13809857	13809970	AT5TE49180	.	-	HELITRON4	Helitron	RC	113	short	199	medium	2591455	chromoarm	9535	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	13809970	13810383	AT5TE49185	.	-	HELITRONY2	Helitron	RC	413	short	198	medium	2591568	chromoarm	9122	no-CHH	no-CHH	.	.	.	.	.
Chr5	13810383	13810405	AT5TE49190	.	+	BRODYAGA1A	MuDR	DNA	22	tiny	586	high	2591981	chromoarm	9100	no-CHH	no-CHH	.	.	.	.	.
Chr5	13810405	13810454	AT5TE49195	.	+	HELITRONY3	Helitron	RC	49	tiny	1399	high	2592003	chromoarm	9051	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13810801	13810912	AT5TE49200	.	+	ATGP10	Gypsy	LTR	111	short	165	medium	2592399	chromoarm	8593	no-RdDM	no-CHH	.	.	.	.	.
Chr5	13810912	13811266	AT5TE49205	.	+	ATREP10A	Helitron	RC	354	short	279	high	2592510	chromoarm	8239	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13811318	13811755	AT5TE49210	.	+	ATLINE1_6	L1	LINE	437	short	129	medium	2592916	chromoarm	7750	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13811825	13811903	AT5TE49215	.	+	ATREP11	Helitron	RC	78	tiny	841	high	2593423	chromoarm	7602	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13811903	13812224	AT5TE49220	.	+	BRODYAGA2	MuDR	DNA	321	short	525	high	2593501	chromoarm	7281	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13812320	13812348	AT5TE49225	.	-	ATREP10B	Helitron	RC	28	tiny	491	high	2593918	chromoarm	7157	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	13812348	13812540	AT5TE49230	.	-	HELITRONY1A	Helitron	RC	192	short	271	high	2593946	chromoarm	6965	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13812540	13815653	AT5TE49235	.	-	ARNOLDY1	MuDR	DNA	3113	medium	237	high	2594138	chromoarm	3852	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	13815653	13815976	AT5TE49240	.	+	BRODYAGA2	MuDR	DNA	323	short	525	high	2597251	chromoarm	3529	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13815976	13817581	AT5TE49245	.	-	ATDNAI27T9A	MuDR	DNA	1605	short	116	medium	2597574	chromoarm	1924	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	13816617	13817274	AT5TE49250	.	-	LIMPET1	MuDR	DNA	657	short	116	medium	2598215	chromoarm	2231	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	13818173	13818193	AT5TE49255	.	+	ARNOLD2	MuDR	DNA	20	tiny	68	medium	2599771	chromoarm	1312	no-CHH	no-CHH	.	.	.	.	.
Chr5	13818193	13819292	AT5TE49260	.	+	ARNOLDY1	MuDR	DNA	1099	short	237	high	2599791	chromoarm	213	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	13819293	13819361	AT5TE49265	.	+	HELITRONY3	Helitron	RC	68	tiny	1399	high	2600891	chromoarm	144	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	13820362	13821600	AT5TE49270	.	-	ATREP10D	Helitron	RC	1238	short	1295	high	2601960	chromoarm	69	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	13821600	13821633	AT5TE49275	.	-	ATREP5	Helitron	RC	33	tiny	624	high	2603198	chromoarm	1307	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	13826529	13826611	AT5TE49285	.	+	HELITRONY3	Helitron	RC	82	tiny	1399	high	2608127	chromoarm	198	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	13826611	13826773	AT5TE49290	.	-	ATENSPM8	En-Spm	DNA	162	short	11	low	2608209	chromoarm	280	no-CHH	no-CHH	.	.	.	.	.
Chr5	13826773	13828625	AT5TE49295	.	-	ATREP10D	Helitron	RC	1852	short	1295	high	2608371	chromoarm	442	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13828625	13830097	AT5TE49300	.	-	ATREP13	Helitron	RC	1472	short	106	medium	2610223	chromoarm	1122	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13830097	13830188	AT5TE49305	.	+	ATREP10D	Helitron	RC	91	tiny	1295	high	2611695	chromoarm	1031	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13830188	13830358	AT5TE49310	.	+	ATREP4	Helitron	RC	170	short	832	high	2611786	chromoarm	861	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	13835143	13835276	AT5TE49320	.	-	ATHATN4	HAT	DNA	133	short	56	medium	2616741	chromoarm	0	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	13835989	13839559	AT5TE49325	.	-	VANDAL2	MuDR	DNA	3570	medium	43	low	2617587	chromoarm	383	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13839559	13840289	AT5TE49330	.	-	TAG3N1	HAT	DNA	730	short	97	medium	2621157	chromoarm	3953	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13840289	13851839	AT5TE49335	.	-	VANDAL2	MuDR	DNA	11550	long	43	low	2621887	chromoarm	769	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	13842479,13843946,13847683	13843326,13844755,13846479	+,+,-	transcript_id-"051000cc-5edf-46c9-aec7-4cbe8447fedb|30",transcript_id-"88a2f9ff-c501-418b-8d1c-e13980619463|11",transcript_id-"e54528cd-62e6-464f-9fac-f811e08692f4|26"
Chr5	13851982	13852222	AT5TE49340	.	+	ATCOPIA32B	Copia	LTR	240	short	10	low	2633580	chromoarm	386	no-CHH	no-CHH	.	.	.	.	.
Chr5	13852627	13853172	AT5TE49345	.	+	VANDAL17	MuDR	DNA	545	short	178	medium	2634225	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	13855103	13855416	AT5TE49350	.	-	ATLINE1A	L1	LINE	313	short	289	high	2636701	chromoarm	753	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13859107	13859471	AT5TE49360	.	-	ATLINE1A	L1	LINE	364	short	289	high	2640705	chromoarm	518	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13859471	13859568	AT5TE49365	.	-	ATREP11	Helitron	RC	97	tiny	841	high	2641069	chromoarm	882	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	13859568	13860429	AT5TE49370	.	+	ATREP15	Helitron	RC	861	short	1003	high	2641166	chromoarm	979	no-CHH	no-CHH	.	.	.	.	.
Chr5	13861308	13862577	AT5TE49375	.	-	ATREP15	Helitron	RC	1269	short	1003	high	2642906	chromoarm	1637	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	13862577	13862836	AT5TE49380	.	+	ATREP4	Helitron	RC	259	short	832	high	2644175	chromoarm	1378	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr5	13862836	13863105	AT5TE49385	.	-	HELITRONY3	Helitron	RC	269	short	1399	high	2644434	chromoarm	1109	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	13863114	13863655	AT5TE49390	.	+	ATREP5	Helitron	RC	541	short	624	high	2644712	chromoarm	559	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	13863655	13863730	AT5TE49395	.	-	BRODYAGA1A	MuDR	DNA	75	tiny	586	high	2645253	chromoarm	484	no-CHH	no-CHH	.	.	.	.	.
Chr5	13863804	13864173	AT5TE49400	.	-	ATHILA8A	Gypsy	LTR	369	short	97	medium	2645402	chromoarm	41	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	13868318	13868352	AT5TE49410	.	-	ATHATN6	HAT	DNA	34	tiny	43	low	2649916	chromoarm	201	no-CHH	no-CHH	.	.	.	.	.
Chr5	13868352	13868549	AT5TE49415	.	-	ATHATN6	HAT	DNA	197	short	43	low	2649950	chromoarm	235	no-CHH	no-CHH	.	.	.	.	.
Chr5	13868560	13868845	AT5TE49420	.	-	ATHATN5	HAT	DNA	285	short	42	low	2650158	chromoarm	443	no-CHH	no-CHH	.	.	.	.	.
Chr5	13870813	13871341	AT5TE49425	.	+	BRODYAGA1	MuDR	DNA	528	short	251	high	2652411	chromoarm	373	no-CHH	no-CHH	.	.	.	.	.
Chr5	13872074	13872682	AT5TE49430	.	+	ATREP15	Helitron	RC	608	short	1003	high	2653672	chromoarm	126	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	13876885	13877521	AT5TE49440	.	-	ATREP9	Helitron	RC	636	short	201	high	2658483	chromoarm	453	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13877563	13877681	AT5TE49445	.	+	ATRE1	Copia	LTR	118	short	22	low	2659161	chromoarm	1131	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	13877681	13878504	AT5TE49450	.	+	ATCOPIA67	Copia	LTR	823	short	15	low	2659279	chromoarm	1249	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	13878504	13879003	AT5TE49455	.	-	ARNOLDY2	MuDR	DNA	499	short	288	high	2660102	chromoarm	2072	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	13879088	13879286	AT5TE49460	.	-	ATLINE1_4	L1	LINE	198	short	102	medium	2660686	chromoarm	2128	no-CHH	no-CHH	.	.	.	.	.
Chr5	13882923	13882956	AT5TE49470	.	-	ATREP10D	Helitron	RC	33	tiny	1295	high	2664521	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	13882970	13883872	AT5TE49475	.	-	ATREP3	Helitron	RC	902	short	1439	high	2664568	chromoarm	33	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	13884390	13885238	AT5TE49480	.	-	ATLINEIII	L1	LINE	848	short	196	medium	2665988	chromoarm	1453	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	13885289	13886322	AT5TE49485	.	+	ATLINEIII	L1	LINE	1033	short	196	medium	2666887	chromoarm	2352	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	13886322	13886471	AT5TE49490	.	+	ATLINEIII	L1	LINE	149	short	196	medium	2667920	chromoarm	3385	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	13886471	13890658	AT5TE49495	.	+	ATLINEIII	L1	LINE	4187	medium	196	medium	2668069	chromoarm	3282	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	13891873	13891924	AT5TE49500	.	-	ATREP7	Helitron	RC	51	tiny	164	medium	2673471	chromoarm	2016	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13891925	13892073	AT5TE49505	.	-	ATREP8	Helitron	RC	149	short	75	medium	2673522	chromoarm	1867	.	.	.	.	.	.	.
Chr5	13892074	13892758	AT5TE49510	.	-	ATREP2	Helitron	RC	685	short	164	medium	2673671	chromoarm	1182	.	.	.	.	.	.	.
Chr5	13893366	13893455	AT5TE49515	.	+	RP1_AT	.	DNA	90	tiny	87	medium	2674963	chromoarm	485	.	.	.	.	.	.	.
Chr5	13897107	13897423	AT5TE49525	.	-	ATMU5	MuDR	DNA	316	short	24	low	2678705	chromoarm	286	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13897423	13897448	AT5TE49530	.	+	ARNOLD1	MuDR	DNA	25	tiny	39	low	2679021	chromoarm	512	no-CHH	no-CHH	.	.	.	.	.
Chr5	13899941	13900159	AT5TE49535	.	+	ATGP10	Gypsy	LTR	218	short	165	medium	2681539	chromoarm	753	no-CHH	no-CHH	.	.	.	.	.
Chr5	13901481	13902288	AT5TE49540	.	+	ATREP10D	Helitron	RC	807	short	1295	high	2683079	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	13903132	13903577	AT5TE49545	.	+	BRODYAGA1A	MuDR	DNA	445	short	586	high	2684730	chromoarm	198	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	13904580	13905052	AT5TE49550	.	-	BRODYAGA1	MuDR	DNA	472	short	251	high	2686178	chromoarm	1646	no-CHH	no-CHH	.	.	.	.	.
Chr5	13905439	13905553	AT5TE49555	.	-	BRODYAGA1	MuDR	DNA	114	short	251	high	2687037	chromoarm	1610	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13905556	13905821	AT5TE49560	.	+	ATREP13	Helitron	RC	266	short	106	medium	2687153	chromoarm	1342	.	.	.	.	.	.	.
Chr5	13905821	13905866	AT5TE49565	.	-	BRODYAGA1	MuDR	DNA	45	tiny	251	high	2687419	chromoarm	1297	no-RdDM	no-CHH	.	.	.	.	.
Chr5	13905866	13906774	AT5TE49570	.	+	TA11	L1	LINE	908	short	157	medium	2687464	chromoarm	389	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	13907846	13908321	AT5TE49575	.	+	ATREP9	Helitron	RC	475	short	201	high	2689444	chromoarm	311	PolIV-and-RDR6-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	13917171	13917235	AT5TE49600	.	-	ATREP11	Helitron	RC	64	tiny	841	high	2698769	chromoarm	834	no-CHH	no-CHH	.	.	.	.	.
Chr5	13917235	13917380	AT5TE49605	.	-	HELITRONY1D	Helitron	RC	145	short	756	high	2698833	chromoarm	898	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	13917381	13917703	AT5TE49610	.	+	ATHATN7	HAT	DNA	323	short	71	medium	2698978	chromoarm	1043	.	.	.	.	.	.	.
Chr5	13917703	13917805	AT5TE49615	.	-	HELITRONY3	Helitron	RC	102	short	1399	high	2699301	chromoarm	1366	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	13917805	13919491	AT5TE49620	.	+	ATREP3	Helitron	RC	1686	short	1439	high	2699403	chromoarm	1468	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13919491	13919534	AT5TE49625	.	-	ATREP10D	Helitron	RC	43	tiny	1295	high	2701089	chromoarm	3034	no-CHH	no-CHH	.	.	.	.	.
Chr5	13919534	13919811	AT5TE49630	.	-	ATREP10D	Helitron	RC	277	short	1295	high	2701132	chromoarm	2757	no-CHH	no-CHH	.	.	.	.	.
Chr5	13920744	13922087	AT5TE49635	.	-	ATREP10D	Helitron	RC	1343	short	1295	high	2702342	chromoarm	481	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	13925927	13925973	AT5TE49645	.	-	ATLINE1_1	L1	LINE	46	tiny	61	medium	2707525	chromoarm	1279	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	13925973	13930453	AT5TE49650	.	-	ATLINE1_2	L1	LINE	4480	medium	41	low	2707571	chromoarm	1325	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	13930463	13931886	AT5TE49655	.	-	ATCOPIA8A	Copia	LTR	1423	short	12	low	2712061	chromoarm	2221	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	13931886	13932039	AT5TE49660	.	-	ATCOPIA48	Copia	LTR	153	short	15	low	2713484	chromoarm	2068	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	13932663	13932740	AT5TE49665	.	-	ATMUN1	MuDR	DNA	77	tiny	107	medium	2714261	chromoarm	1367	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	13932740	13932908	AT5TE49670	.	+	HELITRON5	Helitron	RC	168	short	56	medium	2714338	chromoarm	1199	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	13941660	13947805	AT5TE49700	.	-	VANDAL3	MuDR	DNA	6145	long	177	medium	2723258	chromoarm	874	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	13942206	13942232	AT5TE49705	.	-	VANDAL3	MuDR	DNA	26	tiny	177	medium	2723804	chromoarm	1420	no-CHH	no-RdDM	.	.	.	.	.
Chr5	13943012	13944139	AT5TE49710	.	-	ATHILA4	Gypsy	LTR	1127	short	250	high	2724610	chromoarm	2226	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	13946007	13946425	AT5TE49715	.	-	VANDAL3	MuDR	DNA	418	short	177	medium	2727605	chromoarm	5221	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	13947805	13948335	AT5TE49720	.	-	HELITRONY1B	Helitron	RC	530	short	414	high	2729403	chromoarm	7019	no-CHH	no-RdDM	.	.	.	.	.
Chr5	13948930	13953996	AT5TE49725	.	+	ATCOPIA12	Copia	LTR	5066	long	15	low	2730528	chromoarm	2882	no-CHH	no-CHH	.	.	.	.	.
Chr5	13951742	13952034	AT5TE49730	.	+	ATCOPIA75	Copia	LTR	292	short	20	low	2733340	chromoarm	4844	no-CHH	no-CHH	.	.	.	.	.
Chr5	13954348	13954386	AT5TE49735	.	-	BRODYAGA1A	MuDR	DNA	38	tiny	586	high	2735946	chromoarm	2492	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	13954386	13955096	AT5TE49740	.	+	ATREP15	Helitron	RC	710	short	1003	high	2735984	chromoarm	1782	no-CHH	no-CHH	.	.	.	.	.
Chr5	13960195	13960429	AT5TE49750	.	-	ATMUN1	MuDR	DNA	234	short	107	medium	2741793	chromoarm	509	no-CHH	no-CHH	.	.	.	.	.
Chr5	13960645	13968612	AT5TE49755	.	+	VANDAL21	MuDR	DNA	7967	long	64	medium	2742243	chromoarm	959	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	13964547,13964571	13965366,13965367	+,+	transcript_id-"8d467dfc-24b4-427a-8988-8fa4ecd3682b|90",transcript_id-"e9885f6b-a4de-451a-ba9f-508f4eb7a618|3"
Chr5	13971105	13971213	AT5TE49760	.	+	ATDNATA1	Mariner	DNA	108	short	28	low	2752703	chromoarm	11419	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	13972006	13972578	AT5TE49765	.	-	Unassigned	.	Unassigned	572	short	.	low	2753604	chromoarm	12320	no-RdDM	no-CHH	ExpressedAndAnnotated	13972528	13971873	-	transcript_id-"1ab0bfb1-ad80-4a6d-b6f1-d5e79c28a7fe|3"
Chr5	13972628	13973773	AT5TE49770	.	+	ATGP8	Gypsy	LTR	1145	short	92	medium	2754226	chromoarm	12942	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	13973891	13974017	AT5TE49775	.	-	HELITRONY1D	Helitron	RC	126	short	756	high	2755489	chromoarm	14205	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	13974022	13974278	AT5TE49780	.	-	HELITRONY1D	Helitron	RC	256	short	756	high	2755620	chromoarm	14336	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	13974278	13974933	AT5TE49785	.	+	ATREP11	Helitron	RC	655	short	841	high	2755876	chromoarm	14592	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13974960	13975215	AT5TE49790	.	-	HELITRON3	Helitron	RC	255	short	53	medium	2756558	chromoarm	15274	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	13975576	13975860	AT5TE49795	.	-	ATIS112A	Harbinger	DNA	284	short	173	medium	2757174	chromoarm	15890	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	13976391	13977052	AT5TE49800	.	+	ATREP4	Helitron	RC	661	short	832	high	2757989	chromoarm	16375	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	13977052	13977248	AT5TE49805	.	+	ATREP11	Helitron	RC	196	short	841	high	2758650	chromoarm	16179	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	13977248	13978364	AT5TE49810	.	+	ATREP11	Helitron	RC	1116	short	841	high	2758846	chromoarm	15063	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13978364	13978445	AT5TE49815	.	+	ATREP15	Helitron	RC	81	tiny	1003	high	2759962	chromoarm	14982	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	13978477	13980068	AT5TE49820	.	-	ATLINEIII	L1	LINE	1591	short	196	medium	2760075	chromoarm	13359	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13980072	13980855	AT5TE49825	.	+	ATREP11	Helitron	RC	783	short	841	high	2761670	chromoarm	12572	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13982135	13982623	AT5TE49830	.	+	ATREP3	Helitron	RC	488	short	1439	high	2763733	chromoarm	10804	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	13982680	13982820	AT5TE49835	.	+	HELITRONY2	Helitron	RC	140	short	198	medium	2764278	chromoarm	10607	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	13982906	13983954	AT5TE49840	.	-	ATHATN7	HAT	DNA	1048	short	71	medium	2764504	chromoarm	9473	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13983274	13983685	AT5TE49845	.	-	ATLINE1A	L1	LINE	411	short	289	high	2764872	chromoarm	9742	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13984080	13984884	AT5TE49850	.	+	HELITRONY3A	Helitron	RC	804	short	49	low	2765678	chromoarm	8543	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	13984884	13987493	AT5TE49855	.	+	HELITRONY1C	Helitron	RC	2609	medium	120	medium	2766482	chromoarm	5934	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	13985733	13985841	AT5TE49860	.	-	ATREP19	.	DNA	108	short	189	medium	2767331	chromoarm	7586	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	13985841	13985965	AT5TE49865	.	+	HELITRONY1C	Helitron	RC	124	short	120	medium	2767439	chromoarm	7462	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	13987493	13987559	AT5TE49870	.	+	ATREP10A	Helitron	RC	66	tiny	279	high	2769091	chromoarm	5868	no-CHH	no-RdDM	.	.	.	.	.
Chr5	13988799	13988992	AT5TE49875	.	+	BRODYAGA1	MuDR	DNA	193	short	251	high	2770397	chromoarm	4435	no-CHH	no-CHH	.	.	.	.	.
Chr5	13988992	13990636	AT5TE49880	.	-	ATLINE1A	L1	LINE	1644	short	289	high	2770590	chromoarm	2791	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	13990638	13991425	AT5TE49885	.	-	BRODYAGA1	MuDR	DNA	787	short	251	high	2772236	chromoarm	2002	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13991425	13991628	AT5TE49890	.	+	HELITRONY1E	Helitron	RC	203	short	447	high	2773023	chromoarm	1799	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	13991632	13992529	AT5TE49895	.	+	ATREP11	Helitron	RC	897	short	841	high	2773230	chromoarm	898	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	13992529	13992749	AT5TE49900	.	+	ATREP10B	Helitron	RC	220	short	491	high	2774127	chromoarm	678	no-CHH	no-CHH	.	.	.	.	.
Chr5	13992749	13993207	AT5TE49905	.	-	BRODYAGA1	MuDR	DNA	458	short	251	high	2774347	chromoarm	220	no-CHH	no-CHH	.	.	.	.	.
Chr5	13993207	13993243	AT5TE49910	.	-	ATMUNX1	MuDR	DNA	36	tiny	155	medium	2774805	chromoarm	184	no-RdDM	no-CHH	.	.	.	.	.
Chr5	13994795	14000227	AT5TE49915	.	+	ATCOPIA56	Copia	LTR	5432	long	16	low	2776393	chromoarm	85	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	14001814	14002490	AT5TE49920	.	+	HELITRONY3	Helitron	RC	676	short	1399	high	2783412	chromoarm	398	no-CHH	no-CHH	.	.	.	.	.
Chr5	14002561	14002619	AT5TE49925	.	-	ATREP5	Helitron	RC	58	tiny	624	high	2784159	chromoarm	1145	no-CHH	no-CHH	.	.	.	.	.
Chr5	14002619	14005039	AT5TE49930	.	+	ATREP5	Helitron	RC	2420	medium	624	high	2784217	chromoarm	1203	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	14005039	14005339	AT5TE49935	.	+	ATREP5	Helitron	RC	300	short	624	high	2786637	chromoarm	2709	no-CHH	no-CHH	.	.	.	.	.
Chr5	14011798	14014115	AT5TE49950	.	+	ATHILA7	Gypsy	LTR	2317	medium	134	medium	2793396	chromoarm	179	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	14012275	14012491	AT5TE49955	.	+	ATMU1	MuDR	DNA	216	short	59	medium	2793873	chromoarm	656	DCL3-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	14013226	14013460	AT5TE49960	.	-	ATMU1	MuDR	DNA	234	short	59	medium	2794824	chromoarm	1607	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	14013460	14013484	AT5TE49965	.	+	ATMU1	MuDR	DNA	24	tiny	59	medium	2795058	chromoarm	1841	no-CHH	no-CHH	.	.	.	.	.
Chr5	14014115	14014202	AT5TE49970	.	+	ATHILA7	Gypsy	LTR	87	tiny	134	medium	2795713	chromoarm	2496	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14015873	14016118	AT5TE49975	.	-	ATHATN9	HAT	DNA	245	short	12	low	2797471	chromoarm	4254	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	14018044	14019448	AT5TE49980	.	+	HELITRONY3	Helitron	RC	1404	short	1399	high	2799642	chromoarm	1573	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	14019668	14020061	AT5TE49985	.	-	ATDNA2T9C	MuDR	DNA	393	short	242	high	2801266	chromoarm	960	no-CHH	no-CHH	.	.	.	.	.
Chr5	14022479	14023539	AT5TE49990	.	+	SIMPLEHAT1	HAT	DNA	1060	short	56	medium	2804077	chromoarm	867	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	14024721	14024741	AT5TE49995	.	-	ATREP10B	Helitron	RC	20	tiny	491	high	2806319	chromoarm	1121	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	14024741	14025035	AT5TE50000	.	-	ATMUN1	MuDR	DNA	294	short	107	medium	2806339	chromoarm	827	no-CHH	no-CHH	.	.	.	.	.
Chr5	14025035	14025741	AT5TE50005	.	+	ATREP3	Helitron	RC	706	short	1439	high	2806633	chromoarm	121	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	14036281	14036302	AT5TE50040	.	-	ATHAT1	HAT	DNA	21	tiny	105	medium	2817879	chromoarm	876	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	14036302	14040000	AT5TE50045	.	-	ATHAT1	HAT	DNA	3698	medium	105	medium	2817900	chromoarm	897	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	14040238	14040378	AT5TE50050	.	+	ATREP3	Helitron	RC	140	short	1439	high	2821836	chromoarm	4833	no-CHH	no-CHH	.	.	.	.	.
Chr5	14040378	14040526	AT5TE50055	.	-	ATREP10A	Helitron	RC	148	short	279	high	2821976	chromoarm	4973	no-CHH	no-CHH	.	.	.	.	.
Chr5	14040526	14041049	AT5TE50060	.	-	HELITRONY1B	Helitron	RC	523	short	414	high	2822124	chromoarm	5121	no-CHH	no-CHH	.	.	.	.	.
Chr5	14041049	14042418	AT5TE50065	.	-	ATREP4	Helitron	RC	1369	short	832	high	2822647	chromoarm	5644	no-CHH	no-CHH	.	.	.	.	.
Chr5	14042640	14043894	AT5TE50070	.	+	Unassigned	.	Unassigned	1254	short	.	low	2824238	chromoarm	5228	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	14051726	14052615	AT5TE50100	.	+	ATHILA5	Gypsy	LTR	889	short	131	medium	2833324	chromoarm	598	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	14056001	14052108	-	transcript_id-"77e544ad-5f42-4391-9ed0-0ff60f5b4b02|4"
Chr5	14051976	14052294	AT5TE50105	.	+	ATHILA7	Gypsy	LTR	318	short	134	medium	2833574	chromoarm	848	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	14056001	14052108	-	transcript_id-"77e544ad-5f42-4391-9ed0-0ff60f5b4b02|4"
Chr5	14053028	14053327	AT5TE50110	.	-	HELITRONY3	Helitron	RC	299	short	1399	high	2834626	chromoarm	1900	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14053327	14055593	AT5TE50115	.	-	HELITRONY3	Helitron	RC	2266	medium	1399	high	2834925	chromoarm	843	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	14056934	14057039	AT5TE50120	.	+	ATREP10D	Helitron	RC	105	short	1295	high	2838532	chromoarm	30	RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14057039	14057310	AT5TE50125	.	+	ATREP5	Helitron	RC	271	short	624	high	2838637	chromoarm	135	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14057310	14058986	AT5TE50130	.	+	HELITRONY1A	Helitron	RC	1676	short	271	high	2838908	chromoarm	406	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	14058986	14059022	AT5TE50135	.	-	ATREP15	Helitron	RC	36	tiny	1003	high	2840584	chromoarm	2082	DCL3-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	14059022	14059156	AT5TE50140	.	+	ATREP10B	Helitron	RC	134	short	491	high	2840620	chromoarm	2118	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14059158	14059806	AT5TE50145	.	+	ATHILA5	Gypsy	LTR	648	short	131	medium	2840756	chromoarm	2254	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14060082	14060339	AT5TE50150	.	-	HELITRONY3	Helitron	RC	258	short	1399	high	2841679	chromoarm	2336	.	.	ExpressedAndAnnotated	14063001	14059847	-	transcript_id-"15f02170-d332-427b-a0a0-f9ab2bc6db3b|4"
Chr5	14060340	14062427	AT5TE50155	.	-	HELITRONY3	Helitron	RC	2088	medium	1399	high	2841937	chromoarm	248	.	.	LowExpressed	.	.	.	.
Chr5	14062427	14062613	AT5TE50160	.	+	HELITRONY1E	Helitron	RC	186	short	447	high	2844025	chromoarm	62	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	14062452	14063128	+	transcript_id-"a0af63c7-a49d-488c-bc18-430037d2aedf|3"
Chr5	14062621	14062675	AT5TE50165	.	+	ATREP15	Helitron	RC	54	tiny	1003	high	2844219	chromoarm	0	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	14063213	14064169	AT5TE50170	.	+	ATREP19	.	DNA	956	short	189	medium	2844811	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14066180	14066518	AT5TE50175	.	+	BRODYAGA1	MuDR	DNA	338	short	251	high	2847778	chromoarm	583	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	14066518	14066600	AT5TE50180	.	+	BRODYAGA1A	MuDR	DNA	82	tiny	586	high	2848116	chromoarm	596	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	14075542	14075891	AT5TE50210	.	-	ATLINE1A	L1	LINE	350	short	289	high	2857139	chromoarm	1137	.	.	.	.	.	.	.
Chr5	14076335	14077067	AT5TE50215	.	-	VANDAL4	MuDR	DNA	732	short	102	medium	2857933	chromoarm	1931	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	14077067	14077226	AT5TE50220	.	-	VANDAL4	MuDR	DNA	159	short	102	medium	2858665	chromoarm	2663	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	14078744	14079423	AT5TE50225	.	+	ATREP3	Helitron	RC	679	short	1439	high	2860342	chromoarm	4340	no-CHH	no-CHH	.	.	.	.	.
Chr5	14079424	14079500	AT5TE50230	.	+	ATREP1	Helitron	RC	76	tiny	498	high	2861022	chromoarm	5020	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14079500	14080693	AT5TE50235	.	+	ATREP1	Helitron	RC	1193	short	498	high	2861098	chromoarm	5096	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	14080693	14080763	AT5TE50240	.	+	ATREP3	Helitron	RC	70	tiny	1439	high	2862291	chromoarm	6289	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14080763	14082834	AT5TE50245	.	-	ATREP3	Helitron	RC	2071	medium	1439	high	2862361	chromoarm	6359	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14082834	14082880	AT5TE50250	.	-	ATREP3	Helitron	RC	46	tiny	1439	high	2864432	chromoarm	7944	no-CHH	no-RdDM	.	.	.	.	.
Chr5	14082880	14083258	AT5TE50255	.	+	ATTIRX1A	.	DNA	378	short	63	medium	2864478	chromoarm	7566	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	14083273	14088529	AT5TE50260	.	-	ATCOPIA18A	Copia	LTR	5256	long	2	low	2864871	chromoarm	2295	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	14092931	14093244	AT5TE50270	.	-	BRODYAGA1A	MuDR	DNA	313	short	586	high	2874529	chromoarm	123	no-CHH	no-CHH	.	.	.	.	.
Chr5	14094291	14094325	AT5TE50275	.	-	ATREP10D	Helitron	RC	34	tiny	1295	high	2875889	chromoarm	14	no-CHH	no-RdDM	.	.	.	.	.
Chr5	14094325	14094385	AT5TE50280	.	-	ATREP4	Helitron	RC	60	tiny	832	high	2875923	chromoarm	48	no-CHH	no-CHH	.	.	.	.	.
Chr5	14094385	14094420	AT5TE50285	.	-	ATREP4	Helitron	RC	35	tiny	832	high	2875983	chromoarm	108	no-CHH	RDR6-RdDM	.	.	.	.	.
Chr5	14094420	14097965	AT5TE50290	.	-	ATREP4	Helitron	RC	3545	medium	832	high	2876018	chromoarm	143	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14097965	14098105	AT5TE50295	.	-	ATREP10D	Helitron	RC	140	short	1295	high	2879563	chromoarm	3688	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14098105	14098229	AT5TE50300	.	+	ATREP4	Helitron	RC	124	short	832	high	2879703	chromoarm	3828	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14098229	14098301	AT5TE50305	.	+	ATREP10B	Helitron	RC	72	tiny	491	high	2879827	chromoarm	3952	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	14098859	14099231	AT5TE50310	.	-	ATDNA12T3_2	.	DNA	372	short	660	high	2880457	chromoarm	4582	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	14099294	14099417	AT5TE50315	.	+	ATSINE4	.	SINE	123	short	98	medium	2880892	chromoarm	5017	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	14099939	14100004	AT5TE50320	.	-	ATHAT1	HAT	DNA	65	tiny	105	medium	2881537	chromoarm	4938	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	14100559	14101224	AT5TE50325	.	+	ATREP15	Helitron	RC	665	short	1003	high	2882157	chromoarm	3718	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	14101224	14101756	AT5TE50330	.	+	ATREP10D	Helitron	RC	532	short	1295	high	2882822	chromoarm	3186	no-CHH	no-CHH	.	.	.	.	.
Chr5	14103077	14103487	AT5TE50335	.	+	ATCOPIA27	Copia	LTR	410	short	19	low	2884675	chromoarm	1455	no-CHH	no-CHH	.	.	.	.	.
Chr5	14103487	14103656	AT5TE50340	.	-	HELITRONY1E	Helitron	RC	169	short	447	high	2885085	chromoarm	1286	no-CHH	no-CHH	.	.	.	.	.
Chr5	14103658	14104252	AT5TE50345	.	-	ATREP2	Helitron	RC	594	short	164	medium	2885256	chromoarm	690	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14104252	14104624	AT5TE50350	.	-	HELITRONY1D	Helitron	RC	372	short	756	high	2885850	chromoarm	318	no-CHH	no-CHH	.	.	.	.	.
Chr5	14104624	14104712	AT5TE50355	.	-	HELITRONY1E	Helitron	RC	88	tiny	447	high	2886222	chromoarm	230	no-CHH	no-CHH	.	.	.	.	.
Chr5	14110968	14111612	AT5TE50370	.	-	BRODYAGA2	MuDR	DNA	644	short	525	high	2892566	chromoarm	432	no-CHH	no-CHH	.	.	.	.	.
Chr5	14111612	14112469	AT5TE50375	.	-	HELITRONY1A	Helitron	RC	857	short	271	high	2893210	chromoarm	1076	no-CHH	no-CHH	.	.	.	.	.
Chr5	14113153	14118424	AT5TE50380	.	-	ATCOPIA91	Copia	LTR	5271	long	7	low	2894751	chromoarm	635	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	14123869	14124139	AT5TE50400	.	+	ATHILA7	Gypsy	LTR	270	short	134	medium	2905467	chromoarm	791	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	14124139	14124267	AT5TE50405	.	+	ATHILA7	Gypsy	LTR	128	short	134	medium	2905737	chromoarm	1061	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	14124746	14124836	AT5TE50410	.	-	ATREP15	Helitron	RC	90	tiny	1003	high	2906344	chromoarm	1668	no-CHH	no-CHH	.	.	.	.	.
Chr5	14124836	14125455	AT5TE50415	.	-	ATCOPIA30	Copia	LTR	619	short	33	low	2906434	chromoarm	1758	no-CHH	no-CHH	.	.	.	.	.
Chr5	14125455	14126229	AT5TE50420	.	-	ATREP11	Helitron	RC	774	short	841	high	2907053	chromoarm	2321	no-CHH	no-CHH	.	.	.	.	.
Chr5	14126229	14126263	AT5TE50425	.	+	ATREP4	Helitron	RC	34	tiny	832	high	2907827	chromoarm	2287	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	14138819	14139724	AT5TE50470	.	-	ATREP3	Helitron	RC	905	short	1439	high	2920417	chromoarm	271	no-CHH	no-CHH	.	.	.	.	.
Chr5	14143595	14143814	AT5TE50480	.	-	ATREP3	Helitron	RC	219	short	1439	high	2925193	chromoarm	452	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	14145986	14146157	AT5TE50485	.	+	TA11	L1	LINE	171	short	157	medium	2927584	chromoarm	2843	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	14146157	14147779	AT5TE50490	.	+	ATLINE1_5	L1	LINE	1622	short	91	medium	2927755	chromoarm	3014	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	14147779	14147893	AT5TE50495	.	+	ATLINE1_6	L1	LINE	114	short	129	medium	2929377	chromoarm	4636	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	14149242	14149290	AT5TE50500	.	-	HELITRONY1B	Helitron	RC	48	tiny	414	high	2930840	chromoarm	6099	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	14149290	14149316	AT5TE50505	.	+	ATREP3	Helitron	RC	26	tiny	1439	high	2930888	chromoarm	6147	no-CHH	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	14149316	14149413	AT5TE50510	.	-	ATREP3	Helitron	RC	97	tiny	1439	high	2930914	chromoarm	6173	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14149413	14151484	AT5TE50515	.	-	ATREP3	Helitron	RC	2071	medium	1439	high	2931011	chromoarm	6270	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14151484	14151643	AT5TE50520	.	+	ATREP3	Helitron	RC	159	short	1439	high	2933082	chromoarm	8341	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14151643	14151699	AT5TE50525	.	-	ATREP3	Helitron	RC	56	tiny	1439	high	2933241	chromoarm	8500	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14151699	14151765	AT5TE50530	.	-	HELITRONY1C	Helitron	RC	66	tiny	120	medium	2933297	chromoarm	8556	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14152350	14155652	AT5TE50535	.	-	ATREP4	Helitron	RC	3302	medium	832	high	2933948	chromoarm	9207	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14153196	14154366	AT5TE50540	.	-	SIMPLEHAT2	HAT	DNA	1170	short	73	medium	2934794	chromoarm	10053	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14155670	14155910	AT5TE50545	.	+	ATLINE1_5	L1	LINE	240	short	91	medium	2937268	chromoarm	12527	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	14156514	14157408	AT5TE50550	.	-	ATIS112A	Harbinger	DNA	894	short	173	medium	2938112	chromoarm	13371	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14157408	14157437	AT5TE50555	.	-	ATIS112A	Harbinger	DNA	29	tiny	173	medium	2939006	chromoarm	14265	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	14158312	14172169	AT5TE50560	.	-	VANDAL5	MuDR	DNA	13857	long	85	medium	2939910	chromoarm	12253	no-RdDM	no-RdDM	ExpressedAndAnnotated	14168798	14169500	+	transcript_id-"84c36840-ce66-4077-bab9-62d46b9fd351|13"
Chr5	14163081	14165796	AT5TE50565	.	-	VANDAL5	MuDR	DNA	2715	medium	85	medium	2944679	chromoarm	18626	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	14165796	14167691	AT5TE50570	.	+	VANDAL4	MuDR	DNA	1895	short	102	medium	2947394	chromoarm	16731	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	14167696	14167849	AT5TE50575	.	-	VANDAL5	MuDR	DNA	153	short	85	medium	2949294	chromoarm	16573	no-RdDM	no-CHH	.	.	.	.	.
Chr5	14172184	14172287	AT5TE50585	.	+	VANDAL4	MuDR	DNA	103	short	102	medium	2953782	chromoarm	12135	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	14172287	14173021	AT5TE50590	.	-	VANDAL4	MuDR	DNA	734	short	102	medium	2953885	chromoarm	11401	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr5	14173021	14173052	AT5TE50595	.	-	VANDAL4	MuDR	DNA	31	tiny	102	medium	2954619	chromoarm	11370	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	14173052	14173349	AT5TE50600	.	-	VANDAL5	MuDR	DNA	297	short	85	medium	2954650	chromoarm	11073	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr5	14173349	14175971	AT5TE50605	.	-	VANDAL5	MuDR	DNA	2622	medium	85	medium	2954947	chromoarm	8451	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	14175971	14176141	AT5TE50610	.	-	VANDAL5	MuDR	DNA	170	short	85	medium	2957569	chromoarm	8281	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	14176141	14176662	AT5TE50615	.	-	VANDAL5A	MuDR	DNA	521	short	56	medium	2957739	chromoarm	7760	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	14176662	14182053	AT5TE50620	.	-	VANDAL5	MuDR	DNA	5391	long	85	medium	2958260	chromoarm	2369	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	14182561	14182592	AT5TE50625	.	+	ATDNAI27T9C	MuDR	DNA	31	tiny	108	medium	2964159	chromoarm	1830	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	14182592	14182820	AT5TE50630	.	-	VANDAL17	MuDR	DNA	228	short	178	medium	2964190	chromoarm	1602	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	14183088	14183314	AT5TE50635	.	-	ATREP9	Helitron	RC	226	short	201	high	2964686	chromoarm	1108	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14183314	14184088	AT5TE50640	.	+	ATHPOGON3	Pogo	DNA	774	short	118	medium	2964912	chromoarm	334	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	14184088	14184139	AT5TE50645	.	-	BRODYAGA2	MuDR	DNA	51	tiny	525	high	2965686	chromoarm	283	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	14184148	14184179	AT5TE50650	.	-	ATREP8	Helitron	RC	31	tiny	75	medium	2965746	chromoarm	243	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	14184179	14184486	AT5TE50655	.	+	HELITRONY3	Helitron	RC	307	short	1399	high	2965777	chromoarm	0	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	14184486	14184520	AT5TE50660	.	-	ATREP11	Helitron	RC	34	tiny	841	high	2966084	chromoarm	0	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	14185740	14186439	AT5TE50665	.	-	ATREP3	Helitron	RC	699	short	1439	high	2967338	chromoarm	463	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	14186439	14186797	AT5TE50670	.	-	ATREP11	Helitron	RC	358	short	841	high	2968037	chromoarm	1162	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	14186797	14187753	AT5TE50675	.	-	ATREP19	.	DNA	956	short	189	medium	2968395	chromoarm	1520	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	14187753	14187938	AT5TE50680	.	+	HELITRONY3	Helitron	RC	185	short	1399	high	2969351	chromoarm	2476	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14187938	14188281	AT5TE50685	.	+	ATREP10D	Helitron	RC	343	short	1295	high	2969536	chromoarm	2661	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14188283	14188498	AT5TE50690	.	-	ATDNATA1	Mariner	DNA	215	short	28	low	2969881	chromoarm	3006	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14189168	14189255	AT5TE50695	.	-	HELITRONY3	Helitron	RC	87	tiny	1399	high	2970766	chromoarm	2455	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	14189255	14190266	AT5TE50700	.	-	HELITRONY3	Helitron	RC	1011	short	1399	high	2970853	chromoarm	1444	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14191528	14191604	AT5TE50705	.	-	VANDAL3	MuDR	DNA	76	tiny	177	medium	2973126	chromoarm	106	no-CHH	no-CHH	.	.	.	.	.
Chr5	14199447	14199691	AT5TE50730	.	+	BOMZH2	MuDR	DNA	244	short	47	low	2981045	chromoarm	244	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	14199691	14199719	AT5TE50735	.	+	ATHAT10	HAT	DNA	28	tiny	35	low	2981289	chromoarm	488	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	14199719	14199748	AT5TE50740	.	+	ATHATN10	HAT	DNA	29	tiny	48	low	2981317	chromoarm	516	no-RdDM	no-CHH	.	.	.	.	.
Chr5	14199748	14199771	AT5TE50745	.	-	ARNOLD1	MuDR	DNA	23	tiny	39	low	2981346	chromoarm	545	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	14199771	14200841	AT5TE50750	.	-	ATMU6N1	MuDR	DNA	1070	short	39	low	2981369	chromoarm	568	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14200841	14200899	AT5TE50755	.	+	ATMU6N1	MuDR	DNA	58	tiny	39	low	2982439	chromoarm	1638	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	14202954	14202989	AT5TE50760	.	+	VANDAL5A	MuDR	DNA	35	tiny	56	medium	2984552	chromoarm	3751	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	14202989	14203701	AT5TE50765	.	+	LIMPET1	MuDR	DNA	712	short	116	medium	2984587	chromoarm	3786	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	14203261	14203576	+	transcript_id-"95cb535b-bc7f-47c7-b5f1-4e44c7dcc88b|3"
Chr5	14203752	14203873	AT5TE50770	.	+	ATDNA1T9A	MuDR	DNA	121	short	36	low	2985350	chromoarm	4549	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	14203873	14209074	AT5TE50775	.	+	ATCOPIA10	Copia	LTR	5201	long	7	low	2985471	chromoarm	218	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	14209074	14209201	AT5TE50780	.	+	VANDAL5A	MuDR	DNA	127	short	56	medium	2990672	chromoarm	91	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr5	14211081	14211239	AT5TE50785	.	-	HELITRONY1A	Helitron	RC	158	short	271	high	2992679	chromoarm	972	no-CHH	no-CHH	.	.	.	.	.
Chr5	14211239	14212190	AT5TE50790	.	-	ATREP11	Helitron	RC	951	short	841	high	2992837	chromoarm	21	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14212190	14212217	AT5TE50795	.	-	ATREP11	Helitron	RC	27	tiny	841	high	2993788	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	14213379	14213517	AT5TE50800	.	-	ATREP10B	Helitron	RC	138	short	491	high	2994977	chromoarm	120	no-CHH	no-CHH	.	.	.	.	.
Chr5	14213517	14216937	AT5TE50805	.	+	ATREP15	Helitron	RC	3420	medium	1003	high	2995115	chromoarm	258	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14216937	14217079	AT5TE50810	.	+	ATREP4	Helitron	RC	142	short	832	high	2998535	chromoarm	3657	no-CHH	no-CHH	.	.	.	.	.
Chr5	14218072	14218403	AT5TE50815	.	-	ATDNA12T3_2	.	DNA	331	short	660	high	2999670	chromoarm	2333	no-CHH	no-CHH	.	.	.	.	.
Chr5	14218617	14219960	AT5TE50820	.	-	HELITRONY1E	Helitron	RC	1343	short	447	high	3000215	chromoarm	776	no-CHH	no-CHH	.	.	.	.	.
Chr5	14219960	14219990	AT5TE50825	.	-	TNAT1A	.	DNA	30	tiny	162	medium	3001558	chromoarm	746	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	14219990	14220060	AT5TE50830	.	-	TNAT1A	.	DNA	70	tiny	162	medium	3001588	chromoarm	676	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	14221879	14221982	AT5TE50835	.	-	RathE1_cons	.	RathE1_cons	103	short	213	high	3003477	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	14223221	14223275	AT5TE50840	.	-	ATLINE1A	L1	LINE	54	tiny	289	high	3004819	chromoarm	0	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	14225529	14226428	AT5TE50845	.	+	ATREP4	Helitron	RC	899	short	832	high	3007127	chromoarm	107	no-CHH	no-CHH	.	.	.	.	.
Chr5	14227283	14227636	AT5TE50850	.	-	ATLINE1A	L1	LINE	353	short	289	high	3008881	chromoarm	1861	no-CHH	no-CHH	.	.	.	.	.
Chr5	14227654	14227729	AT5TE50855	.	-	ATLINEIII	L1	LINE	75	tiny	196	medium	3009252	chromoarm	2232	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	14228513	14229093	AT5TE50860	.	-	ATHILA7A	Gypsy	LTR	580	short	31	low	3010111	chromoarm	3091	no-CHH	no-CHH	.	.	.	.	.
Chr5	14229514	14229627	AT5TE50865	.	-	TNAT2A	.	DNA	113	short	38	low	3011112	chromoarm	3633	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14231165	14231215	AT5TE50870	.	-	HELITRONY1E	Helitron	RC	50	tiny	447	high	3012763	chromoarm	2045	no-CHH	no-CHH	.	.	.	.	.
Chr5	14231215	14231242	AT5TE50875	.	+	ATTIR16T3A	.	DNA	27	tiny	106	medium	3012813	chromoarm	2018	no-CHH	no-CHH	.	.	.	.	.
Chr5	14231242	14231906	AT5TE50880	.	-	HELITRONY1A	Helitron	RC	664	short	271	high	3012840	chromoarm	1354	no-CHH	no-CHH	.	.	.	.	.
Chr5	14231906	14231972	AT5TE50885	.	-	ATREP1	Helitron	RC	66	tiny	498	high	3013504	chromoarm	1288	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14232764	14232971	AT5TE50890	.	-	ATMUNX1	MuDR	DNA	207	short	155	medium	3014362	chromoarm	289	no-CHH	no-CHH	.	.	.	.	.
Chr5	14235443	14235759	AT5TE50895	.	+	ATCOPIA82	Copia	LTR	316	short	7	low	3017041	chromoarm	314	no-CHH	no-CHH	.	.	.	.	.
Chr5	14238050	14238793	AT5TE50900	.	-	ARNOLDY2	MuDR	DNA	743	short	288	high	3019648	chromoarm	76	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14238793	14238826	AT5TE50905	.	+	ARNOLDY2	MuDR	DNA	33	tiny	288	high	3020391	chromoarm	371	no-CHH	no-CHH	.	.	.	.	.
Chr5	14238826	14238891	AT5TE50910	.	+	VANDALNX2	MuDR	DNA	65	tiny	37	low	3020424	chromoarm	306	no-CHH	no-CHH	.	.	.	.	.
Chr5	14241497	14241727	AT5TE50915	.	-	ATLINE1_3A	L1	LINE	230	short	160	medium	3023095	chromoarm	0	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14242161	14242318	AT5TE50920	.	+	ATSINE4	.	SINE	157	short	98	medium	3023759	chromoarm	299	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	14246369	14246824	AT5TE50930	.	+	ATREP10D	Helitron	RC	455	short	1295	high	3027967	chromoarm	73	no-RdDM	no-CHH	.	.	.	.	.
Chr5	14246824	14247605	AT5TE50935	.	-	ATREP4	Helitron	RC	781	short	832	high	3028422	chromoarm	528	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	14247605	14247722	AT5TE50940	.	-	HELITRONY3	Helitron	RC	117	short	1399	high	3029203	chromoarm	479	no-CHH	no-CHH	.	.	.	.	.
Chr5	14252984	14253192	AT5TE50950	.	-	ATENSPM2	En-Spm	DNA	208	short	114	medium	3034582	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	14257367	14258980	AT5TE50960	.	+	ATHILA8A	Gypsy	LTR	1613	short	97	medium	3038965	chromoarm	1352	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	14257958,14257959,14257959	14258321,14258131,14259338	+,+,+	transcript_id-"12ffd909-dcfd-4795-b67a-09d45445e852|3",transcript_id-"cca366af-47e8-4b17-98b1-6828a88c6873|16",transcript_id-"be13f067-ce6a-406e-8a04-a2e8cef4184c|3"
Chr5	14259954	14264629	AT5TE50965	.	-	TA11	L1	LINE	4675	medium	157	medium	3041552	chromoarm	3939	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	14264639	14265608	AT5TE50970	.	-	ATREP11A	Helitron	RC	969	short	95	medium	3046237	chromoarm	6082	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	14265608	14265659	AT5TE50975	.	+	HELITRONY3	Helitron	RC	51	tiny	1399	high	3047206	chromoarm	6031	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	14265659	14265753	AT5TE50980	.	-	ATREP3	Helitron	RC	94	tiny	1439	high	3047257	chromoarm	5937	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	14265753	14265813	AT5TE50985	.	-	ATREP15	Helitron	RC	60	tiny	1003	high	3047351	chromoarm	5877	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	14266343	14266431	AT5TE50990	.	+	ATREP4	Helitron	RC	88	tiny	832	high	3047941	chromoarm	5259	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	14266431	14268086	AT5TE50995	.	+	ATREP5	Helitron	RC	1655	short	624	high	3048029	chromoarm	3604	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	14268564	14271027	AT5TE51000	.	+	TA11	L1	LINE	2463	medium	157	medium	3050162	chromoarm	663	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	14279865	14280197	AT5TE51030	.	-	BRODYAGA1A	MuDR	DNA	332	short	586	high	3061463	chromoarm	941	no-CHH	DCL3-RdDM	.	.	.	.	.
Chr5	14280682	14281506	AT5TE51035	.	+	ATREP10D	Helitron	RC	824	short	1295	high	3062280	chromoarm	1083	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	14288532	14288556	AT5TE51060	.	+	ATHPOGON3	Pogo	DNA	24	tiny	118	medium	3070130	chromoarm	353	no-CHH	no-CHH	.	.	.	.	.
Chr5	14288556	14288693	AT5TE51065	.	+	ATHPOGON1	Pogo	DNA	137	short	174	medium	3070154	chromoarm	377	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	14290919	14291429	AT5TE51070	.	-	HELITRONY1E	Helitron	RC	510	short	447	high	3072517	chromoarm	2740	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	14291438	14291942	AT5TE51075	.	+	ATHPOGON1	Pogo	DNA	504	short	174	medium	3073036	chromoarm	3259	no-CHH	no-CHH	.	.	.	.	.
Chr5	14291942	14291970	AT5TE51080	.	-	BRODYAGA1	MuDR	DNA	28	tiny	251	high	3073540	chromoarm	3763	no-CHH	no-CHH	.	.	.	.	.
Chr5	14291970	14292158	AT5TE51085	.	+	ATLINE1_1	L1	LINE	188	short	61	medium	3073568	chromoarm	3791	no-CHH	no-CHH	.	.	.	.	.
Chr5	14293730	14294469	AT5TE51090	.	+	ATHPOGON3	Pogo	DNA	739	short	118	medium	3075328	chromoarm	4765	no-CHH	no-CHH	.	.	.	.	.
Chr5	14294472	14294736	AT5TE51095	.	+	BRODYAGA2	MuDR	DNA	264	short	525	high	3076070	chromoarm	4498	no-CHH	no-CHH	.	.	.	.	.
Chr5	14294758	14294828	AT5TE51100	.	-	ATHILA7	Gypsy	LTR	70	tiny	134	medium	3076356	chromoarm	4406	no-RdDM	no-CHH	.	.	.	.	.
Chr5	14294828	14295026	AT5TE51105	.	-	RathE1_cons	.	RathE1_cons	198	short	213	high	3076426	chromoarm	4208	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	14295361	14295646	AT5TE51110	.	-	ATHILA4C	Gypsy	LTR	285	short	206	high	3076959	chromoarm	3588	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	14295646	14296757	AT5TE51115	.	-	ATHILA4	Gypsy	LTR	1111	short	250	high	3077244	chromoarm	2477	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	14296757	14296910	AT5TE51120	.	-	ATHILA4	Gypsy	LTR	153	short	250	high	3078355	chromoarm	2324	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	14296910	14297141	AT5TE51125	.	-	ATHILA4	Gypsy	LTR	231	short	250	high	3078508	chromoarm	2093	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	14297161	14298093	AT5TE51130	.	-	ATHILA4D_LTR	Gypsy	LTR	932	short	106	medium	3078759	chromoarm	1141	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	14298093	14298114	AT5TE51135	.	-	ATHILA4D_LTR	Gypsy	LTR	21	tiny	106	medium	3079691	chromoarm	1120	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14298114	14298829	AT5TE51140	.	-	ATHPOGON3	Pogo	DNA	715	short	118	medium	3079712	chromoarm	405	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14298830	14299159	AT5TE51145	.	-	ATHILA4	Gypsy	LTR	330	short	250	high	3080427	chromoarm	75	.	.	LowExpressed	.	.	.	.
Chr5	14299159	14299203	AT5TE51150	.	-	ATHILA4D_LTR	Gypsy	LTR	44	tiny	106	medium	3080757	chromoarm	31	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	14301365	14301897	AT5TE51155	.	-	HELITRONY1D	Helitron	RC	532	short	756	high	3082963	chromoarm	1079	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14301898	14301955	AT5TE51160	.	+	BRODYAGA1A	MuDR	DNA	58	tiny	586	high	3083495	chromoarm	1021	.	.	.	.	.	.	.
Chr5	14306492	14307038	AT5TE51170	.	-	ATLANTYS1	Gypsy	LTR	546	short	153	medium	3088090	chromoarm	1520	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	14307200	14307627	AT5TE51175	.	-	BRODYAGA1A	MuDR	DNA	427	short	586	high	3088798	chromoarm	2228	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14308471	14309375	AT5TE51180	.	-	ATREP10B	Helitron	RC	904	short	491	high	3090069	chromoarm	3499	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	14309375	14309488	AT5TE51185	.	-	ATREP10B	Helitron	RC	113	short	491	high	3090973	chromoarm	4403	no-RdDM	no-CHH	.	.	.	.	.
Chr5	14309488	14309558	AT5TE51190	.	+	HELITRONY3	Helitron	RC	70	tiny	1399	high	3091086	chromoarm	4516	no-RdDM	no-CHH	.	.	.	.	.
Chr5	14309558	14309657	AT5TE51195	.	+	ATLINE1_4	L1	LINE	99	tiny	102	medium	3091156	chromoarm	4586	no-RdDM	no-CHH	.	.	.	.	.
Chr5	14309657	14312318	AT5TE51200	.	+	ATLINE1A	L1	LINE	2661	medium	289	high	3091255	chromoarm	4685	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	14312093,14312094	14311605,14311691	-,-	transcript_id-"6e3ec4b4-ac6d-4c68-a637-c00f23c57dbb|15",transcript_id-"a68d7203-c6a7-48eb-9c05-8c584b35dc8a|3"
Chr5	14312318	14312341	AT5TE51205	.	+	ATREP15	Helitron	RC	23	tiny	1003	high	3093916	chromoarm	7346	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	14312341	14313857	AT5TE51210	.	+	ATREP10D	Helitron	RC	1516	short	1295	high	3093939	chromoarm	6810	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14316113	14316338	AT5TE51215	.	-	ATHPOGON2	Pogo	DNA	225	short	27	low	3097711	chromoarm	4329	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	14317395	14317612	AT5TE51220	.	-	ATREP4	Helitron	RC	217	short	832	high	3098993	chromoarm	3055	no-RdDM	no-CHH	.	.	.	.	.
Chr5	14317621	14319330	AT5TE51225	.	-	ATREP10A	Helitron	RC	1709	short	279	high	3099219	chromoarm	1337	no-RdDM	no-CHH	.	.	.	.	.
Chr5	14319330	14319727	AT5TE51230	.	-	ATHILA4D_LTR	Gypsy	LTR	397	short	106	medium	3100928	chromoarm	940	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14319874	14320433	AT5TE51235	.	-	HELITRONY1D	Helitron	RC	559	short	756	high	3101472	chromoarm	234	no-RdDM	no-CHH	.	.	.	.	.
Chr5	14323384	14323502	AT5TE51245	.	+	ATREP10C	Helitron	RC	118	short	123	medium	3104982	chromoarm	986	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	14323504	14323885	AT5TE51250	.	-	ATMUNX1	MuDR	DNA	381	short	155	medium	3105102	chromoarm	825	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	14323886	14324486	AT5TE51255	.	+	BRODYAGA2	MuDR	DNA	600	short	525	high	3105484	chromoarm	224	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	14325479	14325564	AT5TE51260	.	-	TAG3N1	HAT	DNA	86	tiny	97	medium	3107076	chromoarm	420	.	.	.	.	.	.	.
Chr5	14325594	14325697	AT5TE51265	.	+	ATREP10C	Helitron	RC	104	short	123	medium	3107191	chromoarm	535	.	.	.	.	.	.	.
Chr5	14325699	14325966	AT5TE51270	.	+	ATMUNX1	MuDR	DNA	268	short	155	medium	3107296	chromoarm	640	.	.	.	.	.	.	.
Chr5	14325966	14326837	AT5TE51275	.	-	ATREP15	Helitron	RC	871	short	1003	high	3107564	chromoarm	63	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	14326837	14326907	AT5TE51280	.	-	HELITRONY1A	Helitron	RC	70	tiny	271	high	3108435	chromoarm	0	PolIV-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	14327678	14327763	AT5TE51285	.	-	TAG3N1	HAT	DNA	86	tiny	97	medium	3109275	chromoarm	420	.	.	.	.	.	.	.
Chr5	14327793	14327890	AT5TE51290	.	+	ATREP10C	Helitron	RC	98	tiny	123	medium	3109390	chromoarm	535	.	.	.	.	.	.	.
Chr5	14327898	14328165	AT5TE51295	.	+	ATMUNX1	MuDR	DNA	268	short	155	medium	3109495	chromoarm	640	.	.	.	.	.	.	.
Chr5	14328165	14329094	AT5TE51300	.	+	HELITRONY3	Helitron	RC	929	short	1399	high	3109763	chromoarm	3	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14329866	14329951	AT5TE51305	.	-	TAG3N1	HAT	DNA	86	tiny	97	medium	3111463	chromoarm	0	.	.	.	.	.	.	.
Chr5	14329981	14330078	AT5TE51310	.	+	ATREP10C	Helitron	RC	98	tiny	123	medium	3111578	chromoarm	0	.	.	.	.	.	.	.
Chr5	14330086	14330460	AT5TE51315	.	+	ATMUNX1	MuDR	DNA	375	short	155	medium	3111683	chromoarm	0	.	.	.	.	.	.	.
Chr5	14330520	14330721	AT5TE51320	.	+	HELITRONY1A	Helitron	RC	201	short	271	high	3112118	chromoarm	311	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	14332054	14332139	AT5TE51325	.	-	TAG3N1	HAT	DNA	86	tiny	97	medium	3113651	chromoarm	420	.	.	.	.	.	.	.
Chr5	14332168	14332266	AT5TE51330	.	+	ATREP10C	Helitron	RC	98	tiny	123	medium	3113766	chromoarm	535	no-CHH	no-CHH	.	.	.	.	.
Chr5	14332273	14332647	AT5TE51335	.	+	ATMUNX1	MuDR	DNA	374	short	155	medium	3113871	chromoarm	640	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14334248	14334333	AT5TE51340	.	-	TAG3N1	HAT	DNA	86	tiny	97	medium	3115845	chromoarm	418	.	.	.	.	.	.	.
Chr5	14334363	14334460	AT5TE51345	.	+	ATREP10C	Helitron	RC	98	tiny	123	medium	3115960	chromoarm	533	.	.	.	.	.	.	.
Chr5	14334468	14334735	AT5TE51350	.	+	ATMUNX1	MuDR	DNA	268	short	155	medium	3116065	chromoarm	638	.	.	.	.	.	.	.
Chr5	14334736	14335664	AT5TE51355	.	+	HELITRONY3	Helitron	RC	929	short	1399	high	3116333	chromoarm	3	.	.	.	.	.	.	.
Chr5	14336445	14336530	AT5TE51360	.	-	TAG3N1	HAT	DNA	86	tiny	97	medium	3118042	chromoarm	420	.	.	.	.	.	.	.
Chr5	14336560	14336657	AT5TE51365	.	+	ATREP10C	Helitron	RC	98	tiny	123	medium	3118157	chromoarm	535	.	.	.	.	.	.	.
Chr5	14336665	14336932	AT5TE51370	.	+	ATMUNX1	MuDR	DNA	268	short	155	medium	3118262	chromoarm	640	.	.	.	.	.	.	.
Chr5	14336933	14337870	AT5TE51375	.	+	HELITRONY3	Helitron	RC	938	short	1399	high	3118530	chromoarm	0	.	.	.	.	.	.	.
Chr5	14338642	14338727	AT5TE51380	.	-	TAG3N1	HAT	DNA	86	tiny	97	medium	3120239	chromoarm	420	.	.	.	.	.	.	.
Chr5	14338757	14338854	AT5TE51385	.	+	ATREP10C	Helitron	RC	98	tiny	123	medium	3120354	chromoarm	535	.	.	.	.	.	.	.
Chr5	14338862	14339129	AT5TE51390	.	+	ATMUNX1	MuDR	DNA	268	short	155	medium	3120459	chromoarm	640	.	.	.	.	.	.	.
Chr5	14339129	14340058	AT5TE51395	.	+	HELITRONY3	Helitron	RC	929	short	1399	high	3120727	chromoarm	3	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14340837	14340922	AT5TE51400	.	-	TAG3N1	HAT	DNA	86	tiny	97	medium	3122434	chromoarm	418	.	.	.	.	.	.	.
Chr5	14340952	14341049	AT5TE51405	.	+	ATREP10C	Helitron	RC	98	tiny	123	medium	3122549	chromoarm	533	.	.	.	.	.	.	.
Chr5	14341057	14341431	AT5TE51410	.	+	ATMUNX1	MuDR	DNA	375	short	155	medium	3122654	chromoarm	638	.	.	.	.	.	.	.
Chr5	14341492	14341692	AT5TE51415	.	+	HELITRONY1A	Helitron	RC	201	short	271	high	3123089	chromoarm	564	.	.	.	.	.	.	.
Chr5	14351928	14352025	AT5TE51450	.	+	ATREP10C	Helitron	RC	98	tiny	123	medium	3133525	chromoarm	534	.	.	.	.	.	.	.
Chr5	14352033	14352304	AT5TE51455	.	+	ATMUNX1	MuDR	DNA	272	short	155	medium	3133630	chromoarm	639	.	.	.	.	.	.	.
Chr5	14352305	14352948	AT5TE51460	.	-	ATREP1	Helitron	RC	644	short	498	high	3133902	chromoarm	284	.	.	.	.	.	.	.
Chr5	14354010	14354095	AT5TE51465	.	-	TAG3N1	HAT	DNA	86	tiny	97	medium	3135607	chromoarm	420	.	.	.	.	.	.	.
Chr5	14354125	14354222	AT5TE51470	.	+	ATREP10C	Helitron	RC	98	tiny	123	medium	3135722	chromoarm	535	.	.	.	.	.	.	.
Chr5	14354230	14354603	AT5TE51475	.	-	ATMUNX1	MuDR	DNA	374	short	155	medium	3135827	chromoarm	640	.	.	.	.	.	.	.
Chr5	14356206	14356291	AT5TE51480	.	-	TAG3N1	HAT	DNA	86	tiny	97	medium	3137803	chromoarm	419	.	.	.	.	.	.	.
Chr5	14356321	14356424	AT5TE51485	.	+	ATREP10C	Helitron	RC	104	short	123	medium	3137918	chromoarm	534	.	.	.	.	.	.	.
Chr5	14356426	14356693	AT5TE51490	.	+	ATMUNX1	MuDR	DNA	268	short	155	medium	3138023	chromoarm	639	.	.	.	.	.	.	.
Chr5	14356694	14357072	AT5TE51495	.	+	HELITRONY3	Helitron	RC	379	short	1399	high	3138291	chromoarm	553	.	.	.	.	.	.	.
Chr5	14358403	14358488	AT5TE51500	.	-	TAG3N1	HAT	DNA	86	tiny	97	medium	3140000	chromoarm	420	.	.	.	.	.	.	.
Chr5	14358518	14358615	AT5TE51505	.	+	ATREP10C	Helitron	RC	98	tiny	123	medium	3140115	chromoarm	535	.	.	.	.	.	.	.
Chr5	14358623	14358996	AT5TE51510	.	-	ATMUNX1	MuDR	DNA	374	short	155	medium	3140220	chromoarm	640	.	.	.	.	.	.	.
Chr5	14359016	14359284	AT5TE51515	.	-	BRODYAGA1	MuDR	DNA	269	short	251	high	3140613	chromoarm	538	.	.	.	.	.	.	.
Chr5	14360600	14360685	AT5TE51520	.	-	TAG3N1	HAT	DNA	86	tiny	97	medium	3142197	chromoarm	420	.	.	.	.	.	.	.
Chr5	14360715	14360812	AT5TE51525	.	+	ATREP10C	Helitron	RC	98	tiny	123	medium	3142312	chromoarm	535	.	.	.	.	.	.	.
Chr5	14360820	14361087	AT5TE51530	.	-	ATMUNX1	MuDR	DNA	268	short	155	medium	3142417	chromoarm	640	.	.	.	.	.	.	.
Chr5	14361087	14362016	AT5TE51535	.	+	HELITRONY3	Helitron	RC	929	short	1399	high	3142685	chromoarm	3	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	14362797	14362882	AT5TE51540	.	-	TAG3N1	HAT	DNA	86	tiny	97	medium	3144394	chromoarm	420	.	.	.	.	.	.	.
Chr5	14362911	14363009	AT5TE51545	.	+	ATREP10C	Helitron	RC	98	tiny	123	medium	3144509	chromoarm	535	no-CHH	no-CHH	.	.	.	.	.
Chr5	14363017	14363391	AT5TE51550	.	+	ATMUNX1	MuDR	DNA	375	short	155	medium	3144614	chromoarm	640	.	.	.	.	.	.	.
Chr5	14364993	14365078	AT5TE51555	.	-	TAG3N1	HAT	DNA	86	tiny	97	medium	3146590	chromoarm	419	.	.	.	.	.	.	.
Chr5	14365108	14365205	AT5TE51560	.	+	ATREP10C	Helitron	RC	98	tiny	123	medium	3146705	chromoarm	534	.	.	.	.	.	.	.
Chr5	14365213	14365480	AT5TE51565	.	+	ATMUNX1	MuDR	DNA	268	short	155	medium	3146810	chromoarm	639	.	.	.	.	.	.	.
Chr5	14365481	14365859	AT5TE51570	.	+	HELITRONY3	Helitron	RC	379	short	1399	high	3147078	chromoarm	554	.	.	.	.	.	.	.
Chr5	14367191	14367276	AT5TE51575	.	-	TAG3N1	HAT	DNA	86	tiny	97	medium	3148788	chromoarm	420	.	.	.	.	.	.	.
Chr5	14367306	14367403	AT5TE51580	.	+	ATREP10C	Helitron	RC	98	tiny	123	medium	3148903	chromoarm	535	.	.	.	.	.	.	.
Chr5	14367411	14367678	AT5TE51585	.	+	ATMUNX1	MuDR	DNA	268	short	155	medium	3149008	chromoarm	640	.	.	.	.	.	.	.
Chr5	14367678	14368056	AT5TE51590	.	+	HELITRONY3	Helitron	RC	378	short	1399	high	3149276	chromoarm	908	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14369390	14369475	AT5TE51595	.	-	TAG3N1	HAT	DNA	86	tiny	97	medium	3150987	chromoarm	1338	.	.	.	.	.	.	.
Chr5	14369505	14369602	AT5TE51600	.	+	ATREP10C	Helitron	RC	98	tiny	123	medium	3151102	chromoarm	1211	.	.	.	.	.	.	.
Chr5	14369610	14369879	AT5TE51605	.	+	ATMUNX1	MuDR	DNA	270	short	155	medium	3151207	chromoarm	934	.	.	.	.	.	.	.
Chr5	14369880	14370258	AT5TE51610	.	+	HELITRONY3	Helitron	RC	379	short	1399	high	3151477	chromoarm	555	.	.	.	.	.	.	.
Chr5	14371590	14371675	AT5TE51615	.	-	TAG3N1	HAT	DNA	86	tiny	97	medium	3153187	chromoarm	419	.	.	.	.	.	.	.
Chr5	14371705	14371802	AT5TE51620	.	+	ATREP10C	Helitron	RC	98	tiny	123	medium	3153302	chromoarm	534	.	.	.	.	.	.	.
Chr5	14371810	14372077	AT5TE51625	.	+	ATMUNX1	MuDR	DNA	268	short	155	medium	3153407	chromoarm	639	.	.	.	.	.	.	.
Chr5	14372077	14373004	AT5TE51630	.	+	HELITRONY3	Helitron	RC	927	short	1399	high	3153675	chromoarm	907	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr5	14373783	14373869	AT5TE51635	.	-	TAG3N1	HAT	DNA	86	tiny	97	medium	3155381	chromoarm	1331	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	14373899	14373996	AT5TE51640	.	+	ATREP10C	Helitron	RC	98	tiny	123	medium	3155496	chromoarm	1204	.	.	.	.	.	.	.
Chr5	14374004	14374271	AT5TE51645	.	+	ATMUNX1	MuDR	DNA	268	short	155	medium	3155601	chromoarm	929	.	.	.	.	.	.	.
Chr5	14374271	14374827	AT5TE51650	.	+	ATREP15	Helitron	RC	556	short	1003	high	3155869	chromoarm	373	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	14375976	14376062	AT5TE51655	.	-	TAG3N1	HAT	DNA	86	tiny	97	medium	3157574	chromoarm	419	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	14376091	14376188	AT5TE51660	.	+	ATREP10C	Helitron	RC	97	tiny	123	medium	3157689	chromoarm	534	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14376195	14376569	AT5TE51665	.	-	ATMUNX1	MuDR	DNA	374	short	155	medium	3157793	chromoarm	638	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr5	14378169	14378255	AT5TE51670	.	-	TAG3N1	HAT	DNA	86	tiny	97	medium	3159767	chromoarm	419	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14378284	14378387	AT5TE51675	.	+	ATREP10C	Helitron	RC	103	short	123	medium	3159882	chromoarm	534	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr5	14378392	14378766	AT5TE51680	.	-	ATMUNX1	MuDR	DNA	374	short	155	medium	3159990	chromoarm	642	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14379335	14383621	AT5TE51685	.	+	ATENSPM1A	En-Spm	DNA	4286	medium	77	medium	3160933	chromoarm	255	no-RdDM	DCL3-RdDM	ExpressedAndAnnotated	14380262,14380262,14380262,14380262	14383178,14383179,14383182,14383184	+,+,+,+	transcript_id-"929bb4b4-1299-4331-ba86-fb057e5dd25b|21",transcript_id-"6bf18f48-1c13-400d-b323-21e9cc32cd9c|73",transcript_id-"e2a0f58e-4da4-4eef-840d-4dbb976136e0|11",transcript_id-"614b650d-55db-4635-909b-3618f92ca565|14"
Chr5	14384654	14384725	AT5TE51690	.	-	TAG3N1	HAT	DNA	72	tiny	97	medium	3166251	chromoarm	477	.	.	.	.	.	.	.
Chr5	14384725	14384873	AT5TE51695	.	-	ATREP15	Helitron	RC	148	short	1003	high	3166323	chromoarm	549	no-CHH	no-CHH	.	.	.	.	.
Chr5	14384873	14385213	AT5TE51700	.	-	ATMUNX1	MuDR	DNA	340	short	155	medium	3166471	chromoarm	697	no-RdDM	no-CHH	.	.	.	.	.
Chr5	14385213	14386077	AT5TE51705	.	+	HELITRONY3	Helitron	RC	864	short	1399	high	3166811	chromoarm	0	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14386848	14386929	AT5TE51710	.	-	TAG3N1	HAT	DNA	82	tiny	97	medium	3168445	chromoarm	419	.	.	.	.	.	.	.
Chr5	14386962	14387059	AT5TE51715	.	+	ATREP10C	Helitron	RC	97	tiny	123	medium	3168560	chromoarm	534	no-CHH	no-CHH	.	.	.	.	.
Chr5	14387066	14387347	AT5TE51720	.	-	ATMUNX1	MuDR	DNA	281	short	155	medium	3168664	chromoarm	638	no-CHH	no-CHH	.	.	.	.	.
Chr5	14387347	14388267	AT5TE51725	.	-	ATREP10D	Helitron	RC	920	short	1295	high	3168945	chromoarm	54	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	14389042	14389123	AT5TE51730	.	-	TAG3N1	HAT	DNA	82	tiny	97	medium	3170639	chromoarm	420	.	.	.	.	.	.	.
Chr5	14389157	14389254	AT5TE51735	.	+	ATREP10C	Helitron	RC	98	tiny	123	medium	3170754	chromoarm	535	.	.	.	.	.	.	.
Chr5	14389262	14389639	AT5TE51740	.	+	ATMUNX1	MuDR	DNA	378	short	155	medium	3170859	chromoarm	640	.	.	.	.	.	.	.
Chr5	14391205	14391290	AT5TE51745	.	-	TAG3N1	HAT	DNA	86	tiny	97	medium	3172802	chromoarm	419	.	.	.	.	.	.	.
Chr5	14391320	14391422	AT5TE51750	.	+	ATREP10C	Helitron	RC	103	short	123	medium	3172917	chromoarm	534	.	.	.	.	.	.	.
Chr5	14391425	14391798	AT5TE51755	.	-	ATMUNX1	MuDR	DNA	374	short	155	medium	3173022	chromoarm	639	.	.	.	.	.	.	.
Chr5	14391805	14391845	AT5TE51760	.	+	BRODYAGA1A	MuDR	DNA	41	tiny	586	high	3173402	chromoarm	773	.	.	.	.	.	.	.
Chr5	14391846	14392609	AT5TE51765	.	+	HELITRONY3	Helitron	RC	764	short	1399	high	3173443	chromoarm	9	.	.	.	.	.	.	.
Chr5	14392610	14393192	AT5TE51770	.	-	ATREP6	Helitron	RC	583	short	181	medium	3174207	chromoarm	0	.	.	.	.	.	.	.
Chr5	14393193	14394736	AT5TE51775	.	+	ATREP11A	Helitron	RC	1544	short	95	medium	3174790	chromoarm	217	.	.	.	.	.	.	.
Chr5	14394737	14394770	AT5TE51780	.	+	HELITRONY3A	Helitron	RC	34	tiny	49	low	3176334	chromoarm	1761	.	.	.	.	.	.	.
Chr5	14394771	14394809	AT5TE51785	.	+	ATREP10B	Helitron	RC	39	tiny	491	high	3176368	chromoarm	1795	.	.	.	.	.	.	.
Chr5	14394861	14395820	AT5TE51790	.	-	ATREP1	Helitron	RC	960	short	498	high	3176458	chromoarm	1885	.	.	.	.	.	.	.
Chr5	14395821	14395843	AT5TE51795	.	-	ATREP2	Helitron	RC	23	tiny	164	medium	3177418	chromoarm	2845	.	.	.	.	.	.	.
Chr5	14395844	14396048	AT5TE51800	.	-	ATREP2	Helitron	RC	205	short	164	medium	3177441	chromoarm	2868	.	.	.	.	.	.	.
Chr5	14396468	14396638	AT5TE51805	.	-	RathE1_cons	.	RathE1_cons	171	short	213	high	3178065	chromoarm	3492	.	.	.	.	.	.	.
Chr5	14397392	14398635	AT5TE51810	.	+	BRODYAGA2	MuDR	DNA	1244	short	525	high	3178989	chromoarm	2855	.	.	.	.	.	.	.
Chr5	14399414	14399746	AT5TE51815	.	+	ATSINE4	.	SINE	333	short	98	medium	3181011	chromoarm	1744	.	.	.	.	.	.	.
Chr5	14407880	14408347	AT5TE51840	.	-	ATREP19	.	DNA	468	short	189	medium	3189477	chromoarm	0	.	.	.	.	.	.	.
Chr5	14409579	14414450	AT5TE51845	.	+	META1	Copia	LTR	4872	medium	138	medium	3191176	chromoarm	441	.	.	.	.	.	.	.
Chr5	14409840	14410117	AT5TE51850	.	-	HELITRONY3	Helitron	RC	278	short	1399	high	3191437	chromoarm	702	.	.	.	.	.	.	.
Chr5	14418081	14418355	AT5TE51880	.	-	ATREP10D	Helitron	RC	275	short	1295	high	3199678	chromoarm	792	.	.	.	.	.	.	.
Chr5	14418356	14418916	AT5TE51885	.	-	ATN9_1	MuDR	DNA	561	short	65	medium	3199953	chromoarm	1067	.	.	.	.	.	.	.
Chr5	14418917	14420884	AT5TE51890	.	+	ATREP10D	Helitron	RC	1968	short	1295	high	3200514	chromoarm	1044	.	.	.	.	.	.	.
Chr5	14424729	14425037	AT5TE51900	.	-	ATHATN1	HAT	DNA	309	short	69	medium	3206326	chromoarm	298	.	.	.	.	.	.	.
Chr5	14426291	14427438	AT5TE51905	.	+	ATREP15	Helitron	RC	1148	short	1003	high	3207888	chromoarm	248	.	.	.	.	.	.	.
Chr5	14427656	14427766	AT5TE51910	.	+	HELITRONY1D	Helitron	RC	111	short	756	high	3209253	chromoarm	1613	.	.	.	.	.	.	.
Chr5	14427767	14428543	AT5TE51915	.	+	HELITRONY3	Helitron	RC	777	short	1399	high	3209364	chromoarm	1117	.	.	.	.	.	.	.
Chr5	14432486	14432714	AT5TE51925	.	-	ATLINE1_3A	L1	LINE	229	short	160	medium	3214083	chromoarm	503	.	.	.	.	.	.	.
Chr5	14432988	14433108	AT5TE51930	.	+	BRODYAGA2	MuDR	DNA	121	short	525	high	3214585	chromoarm	1005	.	.	LowExpressed	.	.	.	.
Chr5	14433109	14434303	AT5TE51935	.	+	BRODYAGA2	MuDR	DNA	1195	short	525	high	3214706	chromoarm	1126	.	.	.	.	.	.	.
Chr5	14434304	14434370	AT5TE51940	.	-	BRODYAGA2	MuDR	DNA	67	tiny	525	high	3215901	chromoarm	1946	.	.	.	.	.	.	.
Chr5	14437729	14437909	AT5TE51950	.	-	RathE1_cons	.	RathE1_cons	181	short	213	high	3219326	chromoarm	179	.	.	.	.	.	.	.
Chr5	14439156	14439206	AT5TE51955	.	+	BRODYAGA1A	MuDR	DNA	51	tiny	586	high	3220753	chromoarm	1606	.	.	.	.	.	.	.
Chr5	14439207	14441532	AT5TE51960	.	+	HELITRONY1A	Helitron	RC	2326	medium	271	high	3220804	chromoarm	1657	.	.	.	.	.	.	.
Chr5	14441533	14441697	AT5TE51965	.	+	HELITRONY1E	Helitron	RC	165	short	447	high	3223130	chromoarm	3983	.	.	.	.	.	.	.
Chr5	14443133	14449559	AT5TE51970	.	+	VANDAL2	MuDR	DNA	6427	long	43	low	3224730	chromoarm	168	.	.	.	.	.	.	.
Chr5	14450504	14450589	AT5TE51975	.	-	TAG3N1	HAT	DNA	86	tiny	97	medium	3232101	chromoarm	419	.	.	.	.	.	.	.
Chr5	14450619	14450721	AT5TE51980	.	+	ATREP10C	Helitron	RC	103	short	123	medium	3232216	chromoarm	534	.	.	.	.	.	.	.
Chr5	14450724	14451097	AT5TE51985	.	-	ATMUNX1	MuDR	DNA	374	short	155	medium	3232321	chromoarm	639	.	.	.	.	.	.	.
Chr5	14451104	14451144	AT5TE51990	.	+	BRODYAGA1A	MuDR	DNA	41	tiny	586	high	3232701	chromoarm	773	.	.	.	.	.	.	.
Chr5	14451145	14451908	AT5TE51995	.	+	HELITRONY3	Helitron	RC	764	short	1399	high	3232742	chromoarm	9	.	.	.	.	.	.	.
Chr5	14451909	14452491	AT5TE52000	.	-	ATREP6	Helitron	RC	583	short	181	medium	3233506	chromoarm	0	.	.	.	.	.	.	.
Chr5	14452492	14454035	AT5TE52005	.	+	ATREP11A	Helitron	RC	1544	short	95	medium	3234089	chromoarm	217	.	.	.	.	.	.	.
Chr5	14454036	14454069	AT5TE52010	.	+	HELITRONY3A	Helitron	RC	34	tiny	49	low	3235633	chromoarm	1761	.	.	.	.	.	.	.
Chr5	14454070	14454108	AT5TE52015	.	+	ATREP10B	Helitron	RC	39	tiny	491	high	3235667	chromoarm	1795	.	.	.	.	.	.	.
Chr5	14454160	14455119	AT5TE52020	.	-	ATREP1	Helitron	RC	960	short	498	high	3235757	chromoarm	1885	.	.	.	.	.	.	.
Chr5	14455120	14455142	AT5TE52025	.	-	ATREP2	Helitron	RC	23	tiny	164	medium	3236717	chromoarm	2845	.	.	.	.	.	.	.
Chr5	14455143	14455347	AT5TE52030	.	-	ATREP2	Helitron	RC	205	short	164	medium	3236740	chromoarm	2868	.	.	.	.	.	.	.
Chr5	14455767	14455937	AT5TE52035	.	-	RathE1_cons	.	RathE1_cons	171	short	213	high	3237364	chromoarm	3492	.	.	.	.	.	.	.
Chr5	14456691	14457934	AT5TE52040	.	+	BRODYAGA2	MuDR	DNA	1244	short	525	high	3238288	chromoarm	2855	.	.	.	.	.	.	.
Chr5	14458713	14459045	AT5TE52045	.	+	ATSINE4	.	SINE	333	short	98	medium	3240310	chromoarm	1744	.	.	.	.	.	.	.
Chr5	14467180	14467647	AT5TE52070	.	-	ATREP19	.	DNA	468	short	189	medium	3248777	chromoarm	0	.	.	.	.	.	.	.
Chr5	14468879	14473750	AT5TE52075	.	+	META1	Copia	LTR	4872	medium	138	medium	3250476	chromoarm	441	.	.	.	.	.	.	.
Chr5	14469140	14469417	AT5TE52080	.	-	HELITRONY3	Helitron	RC	278	short	1399	high	3250737	chromoarm	702	.	.	.	.	.	.	.
Chr5	14477381	14477655	AT5TE52110	.	-	ATREP10D	Helitron	RC	275	short	1295	high	3258978	chromoarm	792	.	.	.	.	.	.	.
Chr5	14477656	14478216	AT5TE52115	.	-	ATN9_1	MuDR	DNA	561	short	65	medium	3259253	chromoarm	1067	.	.	.	.	.	.	.
Chr5	14478217	14480184	AT5TE52120	.	+	ATREP10D	Helitron	RC	1968	short	1295	high	3259814	chromoarm	1044	.	.	.	.	.	.	.
Chr5	14484029	14484337	AT5TE52130	.	-	ATHATN1	HAT	DNA	309	short	69	medium	3265626	chromoarm	298	.	.	.	.	.	.	.
Chr5	14485591	14486738	AT5TE52135	.	+	ATREP15	Helitron	RC	1148	short	1003	high	3267188	chromoarm	248	.	.	.	.	.	.	.
Chr5	14486956	14487066	AT5TE52140	.	+	HELITRONY1D	Helitron	RC	111	short	756	high	3268553	chromoarm	1613	.	.	.	.	.	.	.
Chr5	14487067	14487843	AT5TE52145	.	+	HELITRONY3	Helitron	RC	777	short	1399	high	3268664	chromoarm	1117	.	.	.	.	.	.	.
Chr5	14491786	14492014	AT5TE52155	.	-	ATLINE1_3A	L1	LINE	229	short	160	medium	3273383	chromoarm	503	.	.	.	.	.	.	.
Chr5	14492288	14492408	AT5TE52160	.	+	BRODYAGA2	MuDR	DNA	121	short	525	high	3273885	chromoarm	1005	.	.	.	.	.	.	.
Chr5	14492409	14493603	AT5TE52165	.	+	BRODYAGA2	MuDR	DNA	1195	short	525	high	3274006	chromoarm	1126	.	.	.	.	.	.	.
Chr5	14493604	14493742	AT5TE52170	.	+	ATREP10D	Helitron	RC	139	short	1295	high	3275201	chromoarm	1874	.	.	.	.	.	.	.
Chr5	14497029	14497209	AT5TE52180	.	-	RathE1_cons	.	RathE1_cons	181	short	213	high	3278626	chromoarm	179	.	.	.	.	.	.	.
Chr5	14498456	14498506	AT5TE52185	.	+	BRODYAGA1A	MuDR	DNA	51	tiny	586	high	3280053	chromoarm	1606	.	.	.	.	.	.	.
Chr5	14498507	14500832	AT5TE52190	.	+	HELITRONY1A	Helitron	RC	2326	medium	271	high	3280104	chromoarm	1657	.	.	.	.	.	.	.
Chr5	14500833	14500997	AT5TE52195	.	+	HELITRONY1E	Helitron	RC	165	short	447	high	3282430	chromoarm	3983	.	.	.	.	.	.	.
Chr5	14502432	14517642	AT5TE52200	.	+	VANDAL2	MuDR	DNA	15210	long	43	low	3284030	chromoarm	673	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	14511883	14511054	-	transcript_id-"f2b7d9e5-dfed-440b-9e3a-0805309d97b9|8"
Chr5	14517898	14517945	AT5TE52205	.	-	ATLINE1_3A	L1	LINE	47	tiny	160	medium	3299496	chromoarm	370	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	14519494	14520092	AT5TE52210	.	-	TNAT1A	.	DNA	598	short	162	medium	3301092	chromoarm	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	14521914	14522199	AT5TE52215	.	-	ATREP11A	Helitron	RC	285	short	95	medium	3303512	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	14522199	14522240	AT5TE52220	.	-	ATREP5	Helitron	RC	41	tiny	624	high	3303797	chromoarm	0	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	14522240	14523718	AT5TE52225	.	-	ATREP5	Helitron	RC	1478	short	624	high	3303838	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14523726	14525621	AT5TE52230	.	+	ARNOLDY2	MuDR	DNA	1895	short	288	high	3305324	chromoarm	0	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	14525621	14526335	AT5TE52235	.	-	HELITRONY3	Helitron	RC	714	short	1399	high	3307219	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	14526335	14526363	AT5TE52240	.	+	HELITRONY1D	Helitron	RC	28	tiny	756	high	3307933	chromoarm	0	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	14526363	14526384	AT5TE52245	.	+	ATREP3	Helitron	RC	21	tiny	1439	high	3307961	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	14534002	14534128	AT5TE52270	.	-	ATHPOGON1	Pogo	DNA	126	short	174	medium	3315600	chromoarm	72	no-CHH	no-CHH	.	.	.	.	.
Chr5	14534319	14534627	AT5TE52275	.	+	VANDAL8	MuDR	DNA	308	short	123	medium	3315917	chromoarm	333	no-CHH	no-CHH	.	.	.	.	.
Chr5	14540732	14540952	AT5TE52290	.	-	TAG1	HAT	DNA	220	short	28	low	3322330	chromoarm	436	no-CHH	no-CHH	.	.	.	.	.
Chr5	14541200	14541297	AT5TE52295	.	-	HELITRON2	Helitron	RC	97	tiny	194	medium	3322798	chromoarm	866	no-CHH	no-CHH	.	.	.	.	.
Chr5	14546409	14546631	AT5TE52305	.	+	ATHATN2	HAT	DNA	222	short	46	low	3328007	chromoarm	292	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	14549940	14550165	AT5TE52315	.	-	SIMPLEGUY1	Harbinger	DNA	225	short	116	medium	3331538	chromoarm	1737	no-CHH	no-CHH	.	.	.	.	.
Chr5	14551659	14551820	AT5TE52320	.	+	RathE1_cons	.	RathE1_cons	161	short	213	high	3333257	chromoarm	3456	no-CHH	no-CHH	.	.	.	.	.
Chr5	14551820	14552309	AT5TE52325	.	-	ATREP3	Helitron	RC	489	short	1439	high	3333418	chromoarm	3617	no-CHH	no-CHH	.	.	.	.	.
Chr5	14552326	14554535	AT5TE52330	.	+	ATREP11	Helitron	RC	2209	medium	841	high	3333924	chromoarm	4123	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14554545	14554822	AT5TE52335	.	+	ATREP10D	Helitron	RC	277	short	1295	high	3336143	chromoarm	6342	no-CHH	no-CHH	.	.	.	.	.
Chr5	14554822	14555091	AT5TE52340	.	-	DT1	Mariner	DNA	269	short	123	medium	3336420	chromoarm	6619	no-CHH	no-CHH	.	.	.	.	.
Chr5	14557743	14559737	AT5TE52345	.	+	ATLINE1_2	L1	LINE	1994	short	41	low	3339341	chromoarm	2315	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	14560838	14561196	AT5TE52350	.	+	ATDNA12T3_2	.	DNA	358	short	660	high	3342436	chromoarm	856	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14563645	14563789	AT5TE52355	.	-	ATHILA4	Gypsy	LTR	144	short	250	high	3345243	chromoarm	602	no-CHH	no-CHH	.	.	.	.	.
Chr5	14573441	14574452	AT5TE52390	.	+	VANDAL18NB	MuDR	DNA	1011	short	19	low	3355039	chromoarm	1525	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14574452	14574518	AT5TE52395	.	+	ARNOLDY2	MuDR	DNA	66	tiny	288	high	3356050	chromoarm	2536	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14574598	14580412	AT5TE52400	.	+	ATLINE1_2	L1	LINE	5814	long	41	low	3356196	chromoarm	2682	no-RdDM	no-RdDM	ExpressedAndAnnotated	14580106	14580415	+	transcript_id-"dd029b73-f820-41e3-b679-93e6a7f9d317|3"
Chr5	14580413	14581296	AT5TE52405	.	+	ARNOLDY2	MuDR	DNA	883	short	288	high	3362011	chromoarm	8497	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	14581456	14584667	AT5TE52410	.	+	ATLINE1_1	L1	LINE	3211	medium	61	medium	3363054	chromoarm	5662	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	14584668	14584772	AT5TE52415	.	-	ARNOLDY2	MuDR	DNA	105	short	288	high	3366265	chromoarm	5557	.	.	.	.	.	.	.
Chr5	14585763	14586003	AT5TE52420	.	+	ATMU2	MuDR	DNA	240	short	64	medium	3367361	chromoarm	4326	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	14586127	14586835	AT5TE52425	.	-	Unassigned	.	Unassigned	708	short	.	low	3367725	chromoarm	3494	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	14586892	14587071	AT5TE52430	.	-	ATDNAI27T9B	MuDR	DNA	179	short	43	low	3368490	chromoarm	3258	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14587965	14588009	AT5TE52435	.	+	ATDNAI26T9	MuDR	DNA	45	tiny	25	low	3369562	chromoarm	2320	.	.	.	.	.	.	.
Chr5	14588087	14588474	AT5TE52440	.	-	ATDNAI27T9C	MuDR	DNA	388	short	108	medium	3369684	chromoarm	1855	.	.	LowExpressed	.	.	.	.
Chr5	14589508	14589834	AT5TE52445	.	-	ATDNAI27T9A	MuDR	DNA	326	short	116	medium	3371106	chromoarm	495	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	14589834	14590032	AT5TE52450	.	-	ATMU2	MuDR	DNA	198	short	64	medium	3371432	chromoarm	297	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14594446	14594832	AT5TE52460	.	+	BOMZH2	MuDR	DNA	386	short	47	low	3376044	chromoarm	159	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14594842	14594917	AT5TE52465	.	-	BOMZH1	MuDR	DNA	75	tiny	28	low	3376440	chromoarm	74	no-CHH	no-CHH	.	.	.	.	.
Chr5	14600372	14600818	AT5TE52480	.	-	ATDNA2T9B	MuDR	DNA	446	short	26	low	3381970	chromoarm	643	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	14602463	14603754	AT5TE52485	.	-	ATREP8	Helitron	RC	1291	short	75	medium	3384061	chromoarm	612	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14603754	14603784	AT5TE52490	.	-	ATREP6	Helitron	RC	30	tiny	181	medium	3385352	chromoarm	582	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	14606035	14606088	AT5TE52495	.	-	ATGP8	Gypsy	LTR	53	tiny	92	medium	3387633	chromoarm	841	no-CHH	no-CHH	.	.	.	.	.
Chr5	14606088	14606593	AT5TE52500	.	-	ATGP8	Gypsy	LTR	505	short	92	medium	3387686	chromoarm	386	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	14606659	14606922	AT5TE52505	.	+	ATMUN1	MuDR	DNA	263	short	107	medium	3388257	chromoarm	57	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	14608000	14608094	AT5TE52510	.	-	ATREP9	Helitron	RC	94	tiny	201	high	3389598	chromoarm	246	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	14608094	14608195	AT5TE52515	.	-	ATREP3	Helitron	RC	101	short	1439	high	3389692	chromoarm	340	no-CHH	no-CHH	.	.	.	.	.
Chr5	14608195	14609008	AT5TE52520	.	-	HELITRONY3	Helitron	RC	813	short	1399	high	3389793	chromoarm	441	no-CHH	no-CHH	.	.	.	.	.
Chr5	14610375	14610472	AT5TE52525	.	+	BRODYAGA2	MuDR	DNA	97	tiny	525	high	3391973	chromoarm	2621	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	14610472	14610695	AT5TE52530	.	+	BRODYAGA2	MuDR	DNA	223	short	525	high	3392070	chromoarm	2718	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	14610695	14610716	AT5TE52535	.	-	BRODYAGA2	MuDR	DNA	21	tiny	525	high	3392293	chromoarm	2941	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	14610716	14611593	AT5TE52540	.	+	BRODYAGA2	MuDR	DNA	877	short	525	high	3392314	chromoarm	2962	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14611344	14611378	AT5TE52545	.	-	BRODYAGA2	MuDR	DNA	34	tiny	525	high	3392942	chromoarm	3590	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	14611594	14612090	AT5TE52550	.	-	BRODYAGA2	MuDR	DNA	497	short	525	high	3393191	chromoarm	3839	.	.	LowExpressed	.	.	.	.
Chr5	14612381	14612518	AT5TE52555	.	-	HELITRONY1B	Helitron	RC	137	short	414	high	3393979	chromoarm	4627	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	14612531	14612585	AT5TE52560	.	+	ATREP10D	Helitron	RC	54	tiny	1295	high	3394129	chromoarm	4777	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	14612587	14613207	AT5TE52565	.	+	ATREP10C	Helitron	RC	620	short	123	medium	3394185	chromoarm	4833	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	14613207	14613726	AT5TE52570	.	+	ATREP10D	Helitron	RC	519	short	1295	high	3394805	chromoarm	4380	no-CHH	no-CHH	.	.	.	.	.
Chr5	14613726	14614865	AT5TE52575	.	+	ATREP5	Helitron	RC	1139	short	624	high	3395324	chromoarm	3241	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14614865	14614922	AT5TE52580	.	+	ATREP5	Helitron	RC	57	tiny	624	high	3396463	chromoarm	3184	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	14614926	14617009	AT5TE52585	.	-	ATHAT1	HAT	DNA	2083	medium	105	medium	3396524	chromoarm	1097	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	14616218	14616307	AT5TE52590	.	+	ATLINE1_3A	L1	LINE	89	tiny	160	medium	3397816	chromoarm	1799	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	14617009	14617077	AT5TE52595	.	-	ATREP15	Helitron	RC	68	tiny	1003	high	3398607	chromoarm	1029	no-CHH	no-CHH	.	.	.	.	.
Chr5	14617083	14617917	AT5TE52600	.	-	HELITRONY1E	Helitron	RC	834	short	447	high	3398681	chromoarm	189	no-CHH	no-CHH	.	.	.	.	.
Chr5	14623695	14623774	AT5TE52620	.	-	BRODYAGA1	MuDR	DNA	79	tiny	251	high	3405293	chromoarm	816	no-CHH	RDR6-RdDM	.	.	.	.	.
Chr5	14623774	14624631	AT5TE52625	.	+	BRODYAGA1	MuDR	DNA	857	short	251	high	3405372	chromoarm	895	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	14624631	14624935	AT5TE52630	.	+	ATREP5	Helitron	RC	304	short	624	high	3406229	chromoarm	1752	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	14625167	14625514	AT5TE52635	.	-	HELITRONY3	Helitron	RC	347	short	1399	high	3406765	chromoarm	2288	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	14625514	14625613	AT5TE52640	.	-	ARNOLDY2	MuDR	DNA	99	tiny	288	high	3407112	chromoarm	2635	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14625613	14627128	AT5TE52645	.	+	ARNOLDY2	MuDR	DNA	1515	short	288	high	3407211	chromoarm	2734	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	14627129	14627177	AT5TE52650	.	-	ARNOLDY2	MuDR	DNA	49	tiny	288	high	3408726	chromoarm	2973	.	.	.	.	.	.	.
Chr5	14627177	14627232	AT5TE52655	.	+	HELITRONY3	Helitron	RC	55	tiny	1399	high	3408775	chromoarm	2918	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	14627232	14627966	AT5TE52660	.	+	HELITRONY3	Helitron	RC	734	short	1399	high	3408830	chromoarm	2184	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	14636993	14637042	AT5TE52690	.	-	HELITRONY2	Helitron	RC	49	tiny	198	medium	3418591	chromoarm	54	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	14637042	14637087	AT5TE52695	.	+	ATREP10B	Helitron	RC	45	tiny	491	high	3418640	chromoarm	103	no-CHH	no-CHH	.	.	.	.	.
Chr5	14637087	14637271	AT5TE52700	.	+	ATREP10B	Helitron	RC	184	short	491	high	3418685	chromoarm	148	no-CHH	no-CHH	.	.	.	.	.
Chr5	14637271	14638220	AT5TE52705	.	+	ATREP3	Helitron	RC	949	short	1439	high	3418869	chromoarm	332	no-CHH	no-CHH	.	.	.	.	.
Chr5	14645820	14645934	AT5TE52730	.	+	ATREP11	Helitron	RC	114	short	841	high	3427418	chromoarm	406	no-CHH	no-CHH	.	.	.	.	.
Chr5	14645934	14646671	AT5TE52735	.	+	ATDNA2T9C	MuDR	DNA	737	short	242	high	3427532	chromoarm	520	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr5	14646671	14646985	AT5TE52740	.	+	ATREP10D	Helitron	RC	314	short	1295	high	3428269	chromoarm	1257	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14647140	14648201	AT5TE52745	.	-	ATREP11A	Helitron	RC	1061	short	95	medium	3428738	chromoarm	1726	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	14648282	14648892	AT5TE52750	.	-	HELITRON4	Helitron	RC	610	short	199	medium	3429880	chromoarm	2198	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	14656748	14656808	AT5TE52780	.	+	BRODYAGA1	MuDR	DNA	60	tiny	251	high	3438346	chromoarm	4601	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr5	14656808	14657665	AT5TE52785	.	+	HELITRONY1D	Helitron	RC	857	short	756	high	3438406	chromoarm	4661	no-CHH	no-CHH	.	.	.	.	.
Chr5	14657665	14659362	AT5TE52790	.	+	HELITRONY1D	Helitron	RC	1697	short	756	high	3439263	chromoarm	5518	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	14659365	14676238	AT5TE52795	.	+	HELITRON4	Helitron	RC	16873	long	199	medium	3440963	chromoarm	5216	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	14667474	14667551	AT5TE52800	.	+	HELITRONY2	Helitron	RC	77	tiny	198	medium	3449072	chromoarm	13903	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	14676238	14677249	AT5TE52830	.	+	AT9TSD1	MuDR	DNA	1011	short	55	medium	3457836	chromoarm	4205	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	14677325	14677601	AT5TE52835	.	-	BOMZH2	MuDR	DNA	276	short	47	low	3458923	chromoarm	3853	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	14677614	14678014	AT5TE52840	.	+	VANDAL12	MuDR	DNA	400	short	37	low	3459212	chromoarm	3440	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	14678559	14678827	AT5TE52845	.	-	ATMU11	MuDR	DNA	268	short	20	low	3460157	chromoarm	2627	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	14679079	14679714	AT5TE52850	.	-	ATMU4	MuDR	DNA	635	short	14	low	3460677	chromoarm	1740	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	14679714	14680141	AT5TE52855	.	-	ATMU1	MuDR	DNA	427	short	59	medium	3461312	chromoarm	1313	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	14680764	14681104	AT5TE52860	.	+	ATREP16	MuDR	DNA	340	short	47	low	3462362	chromoarm	350	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	14681123	14681281	AT5TE52865	.	+	BOMZH2	MuDR	DNA	158	short	47	low	3462721	chromoarm	173	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14686661	14686713	AT5TE52875	.	-	TNAT1A	.	DNA	52	tiny	162	medium	3468259	chromoarm	132	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	14687300	14687383	AT5TE52880	.	-	ATCOPIA28	Copia	LTR	83	tiny	81	medium	3468898	chromoarm	771	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	14688093	14688705	AT5TE52885	.	+	ATLANTYS2	Gypsy	LTR	612	short	179	medium	3469691	chromoarm	1564	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	14688751	14688815	AT5TE52890	.	+	ATLANTYS3	Gypsy	LTR	64	tiny	142	medium	3470349	chromoarm	1620	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	14688702	14692949	+	transcript_id-"8b4ab4b7-4d4c-484c-9bf0-a0a46c682ed9|3"
Chr5	14688815	14688947	AT5TE52895	.	-	ATREP3	Helitron	RC	132	short	1439	high	3470413	chromoarm	1488	no-CHH	no-CHH	.	.	.	.	.
Chr5	14688947	14688990	AT5TE52900	.	+	HELITRONY3	Helitron	RC	43	tiny	1399	high	3470545	chromoarm	1445	no-RdDM	no-CHH	.	.	.	.	.
Chr5	14688990	14689900	AT5TE52905	.	+	HELITRONY3	Helitron	RC	910	short	1399	high	3470588	chromoarm	535	no-CHH	no-CHH	.	.	.	.	.
Chr5	14693291	14693397	AT5TE52915	.	+	ATREP3	Helitron	RC	106	short	1439	high	3474889	chromoarm	440	no-CHH	no-CHH	.	.	.	.	.
Chr5	14693397	14697887	AT5TE52920	.	+	ATREP10D	Helitron	RC	4490	medium	1295	high	3474995	chromoarm	546	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	14694161	14695647	AT5TE52925	.	+	ATCOPIA65	Copia	LTR	1486	short	34	low	3475759	chromoarm	1310	no-CHH	no-CHH	.	.	.	.	.
Chr5	14695647	14695675	AT5TE52930	.	+	ATCOPIA65	Copia	LTR	28	tiny	34	low	3477245	chromoarm	2796	no-CHH	no-CHH	.	.	.	.	.
Chr5	14695675	14696083	AT5TE52935	.	+	ATCOPIA54	Copia	LTR	408	short	18	low	3477273	chromoarm	2824	no-CHH	no-CHH	.	.	.	.	.
Chr5	14696105	14696424	AT5TE52940	.	+	ATREP4	Helitron	RC	319	short	832	high	3477703	chromoarm	3254	no-CHH	no-CHH	.	.	.	.	.
Chr5	14696804	14696833	AT5TE52945	.	-	ATMUN1	MuDR	DNA	29	tiny	107	medium	3478402	chromoarm	3953	no-CHH	no-CHH	.	.	.	.	.
Chr5	14696833	14697814	AT5TE52950	.	-	HELITRONY1E	Helitron	RC	981	short	447	high	3478431	chromoarm	3515	no-CHH	no-CHH	.	.	.	.	.
Chr5	14697814	14697864	AT5TE52955	.	-	ATREP11	Helitron	RC	50	tiny	841	high	3479412	chromoarm	3465	no-CHH	no-CHH	.	.	.	.	.
Chr5	14698277	14698378	AT5TE52960	.	+	ATREP3	Helitron	RC	101	short	1439	high	3479875	chromoarm	2951	no-CHH	no-CHH	.	.	.	.	.
Chr5	14698378	14699124	AT5TE52965	.	+	BRODYAGA2	MuDR	DNA	746	short	525	high	3479976	chromoarm	2205	no-CHH	no-CHH	.	.	.	.	.
Chr5	14699124	14699457	AT5TE52970	.	-	HELITRONY1D	Helitron	RC	333	short	756	high	3480722	chromoarm	1872	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	14699457	14699493	AT5TE52975	.	+	ATDNA2T9C	MuDR	DNA	36	tiny	242	high	3481055	chromoarm	1836	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	14699493	14700697	AT5TE52980	.	-	ATREP3	Helitron	RC	1204	short	1439	high	3481091	chromoarm	632	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	14700697	14700720	AT5TE52985	.	+	ATREP15	Helitron	RC	23	tiny	1003	high	3482295	chromoarm	609	no-CHH	RDR6-RdDM	.	.	.	.	.
Chr5	14711378	14711774	AT5TE53020	.	-	ATHATN4	HAT	DNA	396	short	56	medium	3492976	chromoarm	1036	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14714510	14714629	AT5TE53030	.	+	ATREP13	Helitron	RC	119	short	106	medium	3496108	chromoarm	207	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	14715652	14716078	AT5TE53035	.	-	ATLINE1_6	L1	LINE	426	short	129	medium	3497250	chromoarm	1349	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	14716078	14716371	AT5TE53040	.	+	HELITRONY3	Helitron	RC	293	short	1399	high	3497676	chromoarm	1775	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	14717156	14717654	AT5TE53045	.	-	HELITRONY1D	Helitron	RC	498	short	756	high	3498754	chromoarm	583	no-CHH	no-CHH	.	.	.	.	.
Chr5	14718526	14718805	AT5TE53050	.	+	ATHPOGON3	Pogo	DNA	279	short	118	medium	3500124	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	14720027	14720144	AT5TE53055	.	-	ATENSPM8	En-Spm	DNA	117	short	11	low	3501625	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	14729281	14729373	AT5TE53080	.	+	SIMPLEGUY1	Harbinger	DNA	92	tiny	116	medium	3510879	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	14731984	14732193	AT5TE53085	.	-	ATREP10D	Helitron	RC	209	short	1295	high	3513582	chromoarm	476	no-CHH	no-CHH	.	.	.	.	.
Chr5	14732193	14732802	AT5TE53090	.	-	ATREP10A	Helitron	RC	609	short	279	high	3513791	chromoarm	685	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14732802	14732848	AT5TE53095	.	+	ATHPOGON3	Pogo	DNA	46	tiny	118	medium	3514400	chromoarm	1028	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14746522	14746815	AT5TE53140	.	-	ARNOLDY2	MuDR	DNA	293	short	288	high	3528120	chromoarm	3577	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14746815	14746978	AT5TE53145	.	-	RathE3_cons	.	RathE3_cons	163	short	104	medium	3528413	chromoarm	3414	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	14747022	14747220	AT5TE53150	.	+	ATLINE1_3A	L1	LINE	198	short	160	medium	3528620	chromoarm	3172	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	14747723	14748300	AT5TE53155	.	+	HELITRONY1D	Helitron	RC	577	short	756	high	3529321	chromoarm	2092	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	14748342	14748581	AT5TE53160	.	-	HARBINGER	Harbinger	DNA	239	short	90	medium	3529940	chromoarm	1811	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	14748678	14748827	AT5TE53165	.	-	ATLINE2	L1	LINE	149	short	138	medium	3530276	chromoarm	1565	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	14749705	14749932	AT5TE53170	.	+	ATREP9	Helitron	RC	227	short	201	high	3531303	chromoarm	460	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	14753369	14753421	AT5TE53180	.	-	HELITRONY1D	Helitron	RC	52	tiny	756	high	3534967	chromoarm	397	no-CHH	no-CHH	.	.	.	.	.
Chr5	14753421	14754356	AT5TE53185	.	-	ATREP15	Helitron	RC	935	short	1003	high	3535019	chromoarm	449	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	14754356	14754520	AT5TE53190	.	+	HELITRONY1D	Helitron	RC	164	short	756	high	3535954	chromoarm	1384	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14754520	14755395	AT5TE53195	.	+	ATREP15	Helitron	RC	875	short	1003	high	3536118	chromoarm	1548	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	14760084	14760309	AT5TE53205	.	+	ATREP4	Helitron	RC	225	short	832	high	3541682	chromoarm	965	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14760312	14761208	AT5TE53210	.	-	ATREP3	Helitron	RC	896	short	1439	high	3541910	chromoarm	66	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14761208	14761244	AT5TE53215	.	-	ATREP4	Helitron	RC	36	tiny	832	high	3542806	chromoarm	30	no-CHH	no-RdDM	.	.	.	.	.
Chr5	14770775	14771151	AT5TE53250	.	-	ATMUNX1	MuDR	DNA	376	short	155	medium	3552373	chromoarm	717	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14780578	14780718	AT5TE53290	.	-	ATLINE1A	L1	LINE	140	short	289	high	3562176	chromoarm	1026	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	14780718	14780744	AT5TE53295	.	-	ATHILA8A	Gypsy	LTR	26	tiny	97	medium	3562316	chromoarm	1166	no-CHH	RDR6-RdDM	.	.	.	.	.
Chr5	14780744	14781128	AT5TE53300	.	-	ATHILA8A	Gypsy	LTR	384	short	97	medium	3562342	chromoarm	1192	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	14782229	14782361	AT5TE53305	.	-	VANDAL3	MuDR	DNA	132	short	177	medium	3563827	chromoarm	2677	no-CHH	no-RdDM	.	.	.	.	.
Chr5	14782361	14786200	AT5TE53310	.	-	VANDAL3	MuDR	DNA	3839	medium	177	medium	3563959	chromoarm	1287	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	14786200	14786277	AT5TE53315	.	-	VANDAL3	MuDR	DNA	77	tiny	177	medium	3567798	chromoarm	1210	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr5	14795607	14795827	AT5TE53340	.	-	VANDAL8	MuDR	DNA	220	short	123	medium	3577205	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	14801475	14801518	AT5TE53360	.	-	HELITRONY3	Helitron	RC	43	tiny	1399	high	3583073	chromoarm	3918	no-CHH	DCL3-RdDM	.	.	.	.	.
Chr5	14801518	14802861	AT5TE53365	.	+	HELITRONY3	Helitron	RC	1343	short	1399	high	3583116	chromoarm	2575	no-CHH	no-CHH	.	.	.	.	.
Chr5	14808447	14809828	AT5TE53380	.	+	ATDNA2T9C	MuDR	DNA	1381	short	242	high	3590045	chromoarm	334	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14810135	14810260	AT5TE53385	.	+	ATREP1	Helitron	RC	125	short	498	high	3591733	chromoarm	2022	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	14810260	14810881	AT5TE53390	.	+	ATREP2	Helitron	RC	621	short	164	medium	3591858	chromoarm	1963	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14810881	14810960	AT5TE53395	.	+	ATREP1	Helitron	RC	79	tiny	498	high	3592479	chromoarm	1884	no-CHH	no-CHH	.	.	.	.	.
Chr5	14812031	14812350	AT5TE53400	.	-	ATREP3	Helitron	RC	319	short	1439	high	3593629	chromoarm	494	no-CHH	no-CHH	.	.	.	.	.
Chr5	14820511	14821403	AT5TE53430	.	-	ATREP4	Helitron	RC	892	short	832	high	3602109	chromoarm	2181	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	14821403	14821595	AT5TE53435	.	+	ATREP5	Helitron	RC	192	short	624	high	3603001	chromoarm	3073	no-CHH	RDR6-RdDM	.	.	.	.	.
Chr5	14821726	14821843	AT5TE53440	.	-	TSCL	.	LINE?	117	short	81	medium	3603324	chromoarm	3396	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	14822734	14822765	AT5TE53445	.	-	ATCOPIA91	Copia	LTR	31	tiny	7	low	3604332	chromoarm	4404	no-CHH	no-CHH	.	.	.	.	.
Chr5	14822765	14823731	AT5TE53450	.	-	ATCOPIA12	Copia	LTR	966	short	15	low	3604363	chromoarm	4435	no-CHH	no-CHH	.	.	.	.	.
Chr5	14823888	14825792	AT5TE53455	.	+	ATCOPIA13	Copia	LTR	1904	short	35	low	3605486	chromoarm	5558	no-CHH	no-CHH	.	.	.	.	.
Chr5	14825792	14825813	AT5TE53460	.	+	ATCOPIA12	Copia	LTR	21	tiny	15	low	3607390	chromoarm	7462	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr5	14826316	14834273	AT5TE53465	.	+	VANDAL6	MuDR	DNA	7957	long	89	medium	3607914	chromoarm	69	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	14826488,14830137,14830139,14830752,14834032,14834032	14829585,14831160,14831054,14831104,14831278,14831280	+,+,+,+,-,-	transcript_id-"e53e73cc-75de-4477-8a6d-c9d7ecc8188c|4",transcript_id-"99904a58-e2b0-44f6-af6c-878ac9dd1a76|5",transcript_id-"6b1608b6-2455-4702-b264-18b9f8bb8c98|47",transcript_id-"6d76ff56-1b00-4da6-adec-6eb8121ec4e0|6",transcript_id-"ed0ffc67-ae13-4767-9283-7762218f7c71|8",transcript_id-"6fed7cc7-e02b-496d-9f26-4949273d1359|9"
Chr5	14841920	14841944	AT5TE53490	.	+	VANDAL1	MuDR	DNA	24	tiny	80	medium	3623518	chromoarm	0	no-CHH	no-RdDM	.	.	.	.	.
Chr5	14841944	14842123	AT5TE53495	.	-	VANDAL1	MuDR	DNA	179	short	80	medium	3623542	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	14844112	14844138	AT5TE53500	.	+	ATMU8	MuDR	DNA	26	tiny	9	low	3625710	chromoarm	0	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	14845673	14845697	AT5TE53505	.	-	ATREP5	Helitron	RC	24	tiny	624	high	3627271	chromoarm	299	no-CHH	no-CHH	.	.	.	.	.
Chr5	14845697	14846588	AT5TE53510	.	-	ATREP5	Helitron	RC	891	short	624	high	3627295	chromoarm	323	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14846588	14848805	AT5TE53515	.	+	ATREP5	Helitron	RC	2217	medium	624	high	3628186	chromoarm	1214	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	14847147	14847431	+	transcript_id-"b642c516-eaf3-453e-9502-3f8974480bcd|6"
Chr5	14848848	14849140	AT5TE53520	.	-	ATMU4	MuDR	DNA	292	short	14	low	3630446	chromoarm	3474	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14849141	14849773	AT5TE53525	.	-	TAG2	HAT	DNA	633	short	86	medium	3630738	chromoarm	3027	.	.	.	.	.	.	.
Chr5	14864898	14865870	AT5TE53580	.	+	BRODYAGA2	MuDR	DNA	972	short	525	high	3646496	chromoarm	457	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	14865870	14866145	AT5TE53585	.	+	ATREP6	Helitron	RC	275	short	181	medium	3647468	chromoarm	182	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	14868744	14869400	AT5TE53590	.	+	ATREP15	Helitron	RC	656	short	1003	high	3650342	chromoarm	995	no-CHH	no-RdDM	.	.	.	.	.
Chr5	14869400	14869499	AT5TE53595	.	-	VANDAL9	MuDR	DNA	99	tiny	43	low	3650998	chromoarm	1336	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	14870332	14870601	AT5TE53600	.	-	VANDAL12	MuDR	DNA	269	short	37	low	3651930	chromoarm	234	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	14870743	14871075	AT5TE53605	.	-	ATREP3	Helitron	RC	332	short	1439	high	3652341	chromoarm	0	no-CHH	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	14871075	14872321	AT5TE53610	.	+	HELITRONY3	Helitron	RC	1246	short	1399	high	3652673	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14872358	14872815	AT5TE53615	.	-	ATLINE1_6	L1	LINE	457	short	129	medium	3653956	chromoarm	1205	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	14873285	14873411	AT5TE53620	.	-	VANDAL8	MuDR	DNA	126	short	123	medium	3654883	chromoarm	1774	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14873421	14874146	AT5TE53625	.	+	ATREP2A	Helitron	RC	725	short	116	medium	3655019	chromoarm	1039	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	14874146	14874212	AT5TE53630	.	-	VANDAL8	MuDR	DNA	66	tiny	123	medium	3655744	chromoarm	973	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	14874460	14875618	AT5TE53635	.	-	ATREP10D	Helitron	RC	1158	short	1295	high	3656058	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	14876042	14876165	AT5TE53640	.	+	ATLINE1A	L1	LINE	123	short	289	high	3657640	chromoarm	515	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	14876173	14876629	AT5TE53645	.	+	ATCOPIA56	Copia	LTR	456	short	16	low	3657771	chromoarm	646	no-CHH	no-CHH	.	.	.	.	.
Chr5	14877234	14877984	AT5TE53650	.	-	ATREP11	Helitron	RC	750	short	841	high	3658832	chromoarm	1707	no-CHH	no-CHH	.	.	.	.	.
Chr5	14878926	14879719	AT5TE53655	.	-	ATREP4	Helitron	RC	793	short	832	high	3660524	chromoarm	1840	no-CHH	no-CHH	.	.	.	.	.
Chr5	14879107	14879530	AT5TE53660	.	+	ATREP11	Helitron	RC	423	short	841	high	3660705	chromoarm	2029	no-CHH	no-CHH	.	.	.	.	.
Chr5	14880095	14880188	AT5TE53665	.	-	RathE1_cons	.	RathE1_cons	94	tiny	213	high	3661692	chromoarm	1371	.	.	.	.	.	.	.
Chr5	14880188	14880811	AT5TE53670	.	+	ATREP2A	Helitron	RC	623	short	116	medium	3661786	chromoarm	748	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14880811	14881291	AT5TE53675	.	+	ATREP2A	Helitron	RC	480	short	116	medium	3662409	chromoarm	268	no-CHH	no-CHH	.	.	.	.	.
Chr5	14900627	14900843	AT5TE53740	.	-	ATREP10D	Helitron	RC	216	short	1295	high	3682225	chromoarm	180	no-CHH	no-CHH	.	.	.	.	.
Chr5	14900843	14902165	AT5TE53745	.	-	ATREP10D	Helitron	RC	1322	short	1295	high	3682441	chromoarm	396	no-CHH	no-CHH	.	.	.	.	.
Chr5	14902773	14903425	AT5TE53750	.	-	ATREP15	Helitron	RC	652	short	1003	high	3684371	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	14904178	14904780	AT5TE53755	.	-	ATREP4	Helitron	RC	602	short	832	high	3685776	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	14904340	14904609	AT5TE53760	.	-	ATTIRTA1	Tc1	DNA	269	short	95	medium	3685938	chromoarm	129	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	14912881	14913016	AT5TE53790	.	-	LIMPET1	MuDR	DNA	135	short	116	medium	3694479	chromoarm	0	no-CHH	no-RdDM	.	.	.	.	.
Chr5	14917828	14918124	AT5TE53800	.	-	ATHPOGON3	Pogo	DNA	296	short	118	medium	3699426	chromoarm	975	no-CHH	no-CHH	.	.	.	.	.
Chr5	14926414	14926780	AT5TE53830	.	-	ATDNA12T3_2	.	DNA	367	short	660	high	3708011	chromoarm	267	.	.	.	.	.	.	.
Chr5	14935855	14936425	AT5TE53860	.	-	ATREP15	Helitron	RC	570	short	1003	high	3717453	chromoarm	199	no-CHH	no-CHH	.	.	.	.	.
Chr5	14940885	14941143	AT5TE53870	.	+	ATMU10	MuDR	DNA	259	short	87	medium	3722482	chromoarm	1252	.	.	.	.	.	.	.
Chr5	14941143	14941659	AT5TE53875	.	+	BRODYAGA1	MuDR	DNA	516	short	251	high	3722741	chromoarm	736	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	14944918	14945244	AT5TE53885	.	-	ATREP2A	Helitron	RC	326	short	116	medium	3726516	chromoarm	564	no-CHH	no-CHH	.	.	.	.	.
Chr5	14945244	14945282	AT5TE53890	.	-	ATREP1	Helitron	RC	38	tiny	498	high	3726842	chromoarm	890	no-CHH	no-CHH	.	.	.	.	.
Chr5	14945301	14945903	AT5TE53895	.	-	ATREP2A	Helitron	RC	602	short	116	medium	3726899	chromoarm	947	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	14946091	14946524	AT5TE53900	.	+	BRODYAGA1	MuDR	DNA	433	short	251	high	3727689	chromoarm	882	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	14946524	14946610	AT5TE53905	.	+	ATMU10	MuDR	DNA	86	tiny	87	medium	3728122	chromoarm	796	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14946610	14947230	AT5TE53910	.	-	ATMU10	MuDR	DNA	620	short	87	medium	3728208	chromoarm	176	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14947230	14947258	AT5TE53915	.	+	ATMU10	MuDR	DNA	28	tiny	87	medium	3728828	chromoarm	148	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14955767	14955941	AT5TE53940	.	-	HELITRONY1E	Helitron	RC	174	short	447	high	3737365	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	14955941	14956808	AT5TE53945	.	-	ATREP13	Helitron	RC	867	short	106	medium	3737539	chromoarm	107	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14956818	14957253	AT5TE53950	.	+	ATREP15	Helitron	RC	435	short	1003	high	3738416	chromoarm	984	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	14957253	14957282	AT5TE53955	.	-	HELITRONY1E	Helitron	RC	29	tiny	447	high	3738851	chromoarm	1419	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	14962052	14962432	AT5TE53965	.	-	HELITRONY1C	Helitron	RC	380	short	120	medium	3743650	chromoarm	887	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	14962886	14963552	AT5TE53970	.	-	TA11	L1	LINE	666	short	157	medium	3744484	chromoarm	1721	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	14963559	14964872	AT5TE53975	.	-	ATLINE1_4	L1	LINE	1314	short	102	medium	3745156	chromoarm	2393	.	.	.	.	.	.	.
Chr5	14965521	14966008	AT5TE53980	.	-	TA11	L1	LINE	488	short	157	medium	3747118	chromoarm	2238	.	.	LowExpressed	.	.	.	.
Chr5	14966645	14966728	AT5TE53985	.	+	ATCOPIA24	Copia	LTR	84	tiny	27	low	3748242	chromoarm	1518	.	.	LowExpressed	.	.	.	.
Chr5	14971995	14972085	AT5TE53995	.	-	VANDAL16	MuDR	DNA	90	tiny	42	low	3753593	chromoarm	897	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	14972586	14972739	AT5TE54000	.	-	ATLANTYS1	Gypsy	LTR	153	short	153	medium	3754184	chromoarm	870	no-CHH	no-CHH	.	.	.	.	.
Chr5	14972778	14973179	AT5TE54005	.	+	ATLINE1_2	L1	LINE	401	short	41	low	3754376	chromoarm	430	no-CHH	no-CHH	.	.	.	.	.
Chr5	14973182	14973403	AT5TE54010	.	+	ATHILA4A	Gypsy	LTR	221	short	310	high	3754780	chromoarm	206	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	14977972	14978626	AT5TE54020	.	+	ATREP4	Helitron	RC	654	short	832	high	3759570	chromoarm	532	no-CHH	no-CHH	.	.	.	.	.
Chr5	14980888	14981002	AT5TE54025	.	+	ATREP18	.	DNA	114	short	391	high	3762486	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	14984703	14984783	AT5TE54035	.	+	HELITRONY1D	Helitron	RC	80	tiny	756	high	3766301	chromoarm	725	no-CHH	no-CHH	.	.	.	.	.
Chr5	14984783	14984860	AT5TE54040	.	-	ATREP3	Helitron	RC	77	tiny	1439	high	3766381	chromoarm	805	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	14984861	14985741	AT5TE54045	.	+	ATMUN1	MuDR	DNA	881	short	107	medium	3766458	chromoarm	399	.	.	.	.	.	.	.
Chr5	14985741	14986087	AT5TE54050	.	-	ATREP11	Helitron	RC	346	short	841	high	3767339	chromoarm	53	no-CHH	no-CHH	.	.	.	.	.
Chr5	14994171	14994453	AT5TE54080	.	+	ATREP17	MuDR	DNA	282	short	34	low	3775769	chromoarm	740	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	14994453	14995067	AT5TE54085	.	+	ATREP13	Helitron	RC	614	short	106	medium	3776051	chromoarm	881	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	14995067	14995090	AT5TE54090	.	-	ATREP10B	Helitron	RC	23	tiny	491	high	3776665	chromoarm	858	no-CHH	no-CHH	.	.	.	.	.
Chr5	14995090	14995163	AT5TE54095	.	+	ATREP17	MuDR	DNA	73	tiny	34	low	3776688	chromoarm	785	no-CHH	no-CHH	.	.	.	.	.
Chr5	14995410	14995836	AT5TE54100	.	+	ATREP3	Helitron	RC	426	short	1439	high	3777008	chromoarm	112	no-CHH	no-CHH	.	.	.	.	.
Chr5	14997146	14997463	AT5TE54105	.	+	ATMU1	MuDR	DNA	317	short	59	medium	3778744	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	14997540	14997673	AT5TE54110	.	+	ATMU10	MuDR	DNA	133	short	87	medium	3779138	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	14999727	15000467	AT5TE54115	.	-	ATREP11A	Helitron	RC	740	short	95	medium	3781325	chromoarm	167	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	15000467	15000489	AT5TE54120	.	-	BRODYAGA2	MuDR	DNA	22	tiny	525	high	3782065	chromoarm	907	no-CHH	no-CHH	.	.	.	.	.
Chr5	15000778	15001475	AT5TE54125	.	+	BRODYAGA2	MuDR	DNA	697	short	525	high	3782376	chromoarm	1218	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	15002081	15003226	AT5TE54130	.	-	ATREP3	Helitron	RC	1145	short	1439	high	3783679	chromoarm	1542	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	15006264	15006584	AT5TE54140	.	-	ATMUN1	MuDR	DNA	320	short	107	medium	3787862	chromoarm	147	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15006584	15006630	AT5TE54145	.	+	ATREP3	Helitron	RC	46	tiny	1439	high	3788182	chromoarm	467	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15012334	15012443	AT5TE54160	.	+	RathE1_cons	.	RathE1_cons	109	short	213	high	3793932	chromoarm	1309	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15012695	15012774	AT5TE54165	.	+	ATREP3	Helitron	RC	79	tiny	1439	high	3794293	chromoarm	1670	no-CHH	no-CHH	.	.	.	.	.
Chr5	15012774	15012831	AT5TE54170	.	+	HELITRONY3	Helitron	RC	57	tiny	1399	high	3794372	chromoarm	1749	no-CHH	no-CHH	.	.	.	.	.
Chr5	15012831	15014169	AT5TE54175	.	+	HELITRONY3	Helitron	RC	1338	short	1399	high	3794429	chromoarm	1806	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	15014169	15014240	AT5TE54180	.	-	ARNOLD1	MuDR	DNA	71	tiny	39	low	3795767	chromoarm	3144	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15014240	15015328	AT5TE54185	.	+	BOMZH1	MuDR	DNA	1088	short	28	low	3795838	chromoarm	3215	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15015328	15015381	AT5TE54190	.	+	ARNOLD1	MuDR	DNA	53	tiny	39	low	3796926	chromoarm	4303	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	15019212	15020306	AT5TE54200	.	-	ATREP10B	Helitron	RC	1094	short	491	high	3800810	chromoarm	8187	no-CHH	no-CHH	.	.	.	.	.
Chr5	15020660	15020686	AT5TE54205	.	+	ATREP10D	Helitron	RC	26	tiny	1295	high	3802258	chromoarm	9635	no-CHH	no-CHH	.	.	.	.	.
Chr5	15020686	15020843	AT5TE54210	.	-	HELITRONY1D	Helitron	RC	157	short	756	high	3802284	chromoarm	9661	no-CHH	no-CHH	.	.	.	.	.
Chr5	15020843	15021941	AT5TE54215	.	-	HELITRONY1A	Helitron	RC	1098	short	271	high	3802441	chromoarm	9818	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15021941	15022068	AT5TE54220	.	+	ATREP5	Helitron	RC	127	short	624	high	3803539	chromoarm	10916	no-CHH	no-CHH	.	.	.	.	.
Chr5	15024238	15024801	AT5TE54225	.	+	ATENSPM6	En-Spm	DNA	563	short	151	medium	3805836	chromoarm	11395	no-CHH	no-CHH	.	.	.	.	.
Chr5	15028621	15029633	AT5TE54235	.	+	ATREP3	Helitron	RC	1012	short	1439	high	3810219	chromoarm	6563	no-CHH	no-CHH	.	.	.	.	.
Chr5	15030071	15030200	AT5TE54240	.	-	BRODYAGA1A	MuDR	DNA	129	short	586	high	3811669	chromoarm	5996	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	15030200	15030875	AT5TE54245	.	-	BRODYAGA1A	MuDR	DNA	675	short	586	high	3811798	chromoarm	5321	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15030875	15030914	AT5TE54250	.	-	ATREP5	Helitron	RC	39	tiny	624	high	3812473	chromoarm	5282	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	15030914	15032075	AT5TE54255	.	-	ATREP1	Helitron	RC	1161	short	498	high	3812512	chromoarm	4121	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15032075	15032771	AT5TE54260	.	+	ATREP15	Helitron	RC	696	short	1003	high	3813673	chromoarm	3425	no-CHH	no-CHH	.	.	.	.	.
Chr5	15032998	15033112	AT5TE54265	.	+	ATCOPIA1	Copia	LTR	114	short	11	low	3814596	chromoarm	3084	no-CHH	no-CHH	.	.	.	.	.
Chr5	15035137	15035240	AT5TE54270	.	+	ATREP8	Helitron	RC	103	short	75	medium	3816735	chromoarm	956	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	15037996	15038152	AT5TE54280	.	+	RathE1_cons	.	RathE1_cons	156	short	213	high	3819594	chromoarm	422	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	15038500	15038606	AT5TE54285	.	+	ATLANTYS3	Gypsy	LTR	106	short	142	medium	3820098	chromoarm	926	no-CHH	no-CHH	.	.	.	.	.
Chr5	15039006	15040385	AT5TE54290	.	-	HELITRONY1D	Helitron	RC	1379	short	756	high	3820604	chromoarm	1432	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	15039846	15041260	AT5TE54295	.	+	HELITRONY1E	Helitron	RC	1414	short	447	high	3821444	chromoarm	2272	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	15040385	15040909	AT5TE54300	.	-	ATREP11	Helitron	RC	524	short	841	high	3821983	chromoarm	2811	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	15041538	15041592	AT5TE54305	.	-	ATREP10D	Helitron	RC	55	tiny	1295	high	3823135	chromoarm	3639	.	.	.	.	.	.	.
Chr5	15041592	15042869	AT5TE54310	.	-	ATREP3	Helitron	RC	1277	short	1439	high	3823190	chromoarm	2362	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15041636	15041668	AT5TE54315	.	-	ATREP3	Helitron	RC	32	tiny	1439	high	3823234	chromoarm	3563	no-RdDM	no-CHH	.	.	.	.	.
Chr5	15041668	15044273	AT5TE54320	.	-	ATREP3	Helitron	RC	2605	medium	1439	high	3823266	chromoarm	958	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	15044273	15044418	AT5TE54325	.	-	ATREP3	Helitron	RC	145	short	1439	high	3825871	chromoarm	813	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	15044418	15044453	AT5TE54330	.	-	META1	Copia	LTR	35	tiny	138	medium	3826016	chromoarm	778	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	15047079	15047558	AT5TE54335	.	+	ATREP19	.	DNA	479	short	189	medium	3828677	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	15048765	15049738	AT5TE54340	.	-	BRODYAGA1	MuDR	DNA	973	short	251	high	3830363	chromoarm	522	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15049738	15049771	AT5TE54345	.	-	BRODYAGA1A	MuDR	DNA	33	tiny	586	high	3831336	chromoarm	489	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	15049771	15049832	AT5TE54350	.	-	BRODYAGA1	MuDR	DNA	61	tiny	251	high	3831369	chromoarm	428	no-CHH	no-CHH	.	.	.	.	.
Chr5	15052059	15052410	AT5TE54355	.	-	BRODYAGA1A	MuDR	DNA	351	short	586	high	3833657	chromoarm	517	no-CHH	no-CHH	.	.	.	.	.
Chr5	15052476	15052546	AT5TE54360	.	+	ATLINE1A	L1	LINE	70	tiny	289	high	3834074	chromoarm	934	no-CHH	no-CHH	.	.	.	.	.
Chr5	15053136	15054501	AT5TE54365	.	-	ATREP10D	Helitron	RC	1365	short	1295	high	3834734	chromoarm	1594	no-CHH	no-CHH	.	.	.	.	.
Chr5	15054501	15054572	AT5TE54370	.	+	HELITRONY1D	Helitron	RC	71	tiny	756	high	3836099	chromoarm	2062	no-CHH	no-CHH	.	.	.	.	.
Chr5	15060895	15061292	AT5TE54390	.	-	HELITRON4	Helitron	RC	397	short	199	medium	3842493	chromoarm	370	no-CHH	no-CHH	.	.	.	.	.
Chr5	15061292	15061380	AT5TE54395	.	-	ATGP1	Gypsy	LTR	88	tiny	144	medium	3842890	chromoarm	767	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	15064154	15064177	AT5TE54405	.	-	ATREP8	Helitron	RC	23	tiny	75	medium	3845752	chromoarm	827	no-CHH	no-CHH	.	.	.	.	.
Chr5	15064177	15064255	AT5TE54410	.	-	HELITRONY1B	Helitron	RC	78	tiny	414	high	3845775	chromoarm	850	no-CHH	no-CHH	.	.	.	.	.
Chr5	15064255	15065086	AT5TE54415	.	+	ATHPOGON3	Pogo	DNA	831	short	118	medium	3845853	chromoarm	307	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr5	15072758	15073188	AT5TE54440	.	+	HELITRONY2	Helitron	RC	430	short	198	medium	3854356	chromoarm	575	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15075029	15075387	AT5TE54445	.	-	ATREP3	Helitron	RC	359	short	1439	high	3856626	chromoarm	177	.	.	.	.	.	.	.
Chr5	15075387	15077865	AT5TE54450	.	+	VANDAL1N1	MuDR	DNA	2478	medium	52	medium	3856985	chromoarm	536	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15077057	15077206	AT5TE54455	.	+	VANDAL2N1	MuDR	DNA	149	short	51	medium	3858655	chromoarm	2206	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	15077278	15077301	AT5TE54460	.	+	VANDAL2N1	MuDR	DNA	23	tiny	51	medium	3858876	chromoarm	2427	no-RdDM	no-CHH	.	.	.	.	.
Chr5	15077865	15077895	AT5TE54465	.	+	VANDAL2N1	MuDR	DNA	30	tiny	51	medium	3859463	chromoarm	3014	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	15078008	15078111	AT5TE54470	.	+	ATREP10C	Helitron	RC	103	short	123	medium	3859606	chromoarm	3157	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	15078437	15078607	AT5TE54475	.	+	ATHILA7	Gypsy	LTR	170	short	134	medium	3860035	chromoarm	3586	RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr5	15079391	15079441	AT5TE54480	.	+	ATCOPIA42	Copia	LTR	50	tiny	35	low	3860989	chromoarm	4540	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15079616	15079660	AT5TE54485	.	+	ATCOPIA38	Copia	LTR	44	tiny	9	low	3861214	chromoarm	4765	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15079660	15079723	AT5TE54490	.	+	ATCOPIA91	Copia	LTR	63	tiny	7	low	3861258	chromoarm	4809	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15079731	15081252	AT5TE54495	.	+	ATCOPIA90	Copia	LTR	1521	short	6	low	3861329	chromoarm	4880	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15081376	15081636	AT5TE54500	.	-	ATREP16	MuDR	DNA	260	short	47	low	3862974	chromoarm	6525	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	15082060	15082261	AT5TE54505	.	+	ATMU1	MuDR	DNA	201	short	59	medium	3863658	chromoarm	7209	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	15082261	15083610	AT5TE54510	.	+	ATMU11	MuDR	DNA	1349	short	20	low	3863859	chromoarm	6901	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	15081702	15084258	+	transcript_id-"3d4fb555-253b-43e8-8c14-7ad563e81160|3"
Chr5	15083610	15083752	AT5TE54515	.	+	ATMU11	MuDR	DNA	142	short	20	low	3865208	chromoarm	6759	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	15083752	15083842	AT5TE54520	.	+	ATMU3	MuDR	DNA	90	tiny	15	low	3865350	chromoarm	6669	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	15084414	15085146	AT5TE54525	.	-	VANDAL12	MuDR	DNA	732	short	37	low	3866012	chromoarm	5365	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	15085064	15084322	-	transcript_id-"9fb4cccb-4fa1-4f7c-907d-ca8174bf087c|86"
Chr5	15085146	15085364	AT5TE54530	.	-	ATREP16	MuDR	DNA	218	short	47	low	3866744	chromoarm	5147	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	15085366	15085577	AT5TE54535	.	+	HELITRONY1A	Helitron	RC	211	short	271	high	3866964	chromoarm	4934	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr5	15085577	15086073	AT5TE54540	.	+	ATREP3	Helitron	RC	496	short	1439	high	3867175	chromoarm	4438	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15086073	15089351	AT5TE54545	.	-	HELITRONY1A	Helitron	RC	3278	medium	271	high	3867671	chromoarm	1160	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	15089351	15089716	AT5TE54550	.	+	ATREP3	Helitron	RC	365	short	1439	high	3870949	chromoarm	795	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	15091947	15091993	AT5TE54555	.	-	ATREP1	Helitron	RC	46	tiny	498	high	3873545	chromoarm	125	no-CHH	no-CHH	.	.	.	.	.
Chr5	15091993	15092640	AT5TE54560	.	-	ATREP5	Helitron	RC	647	short	624	high	3873591	chromoarm	171	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	15092640	15092719	AT5TE54565	.	-	ARNOLDY1	MuDR	DNA	79	tiny	237	high	3874238	chromoarm	818	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	15092749	15093033	AT5TE54570	.	-	ARNOLD1	MuDR	DNA	284	short	39	low	3874347	chromoarm	869	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	15093122	15093184	AT5TE54575	.	-	ARNOLD2	MuDR	DNA	62	tiny	68	medium	3874720	chromoarm	718	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15095878	15095936	AT5TE54580	.	-	HELITRONY3	Helitron	RC	58	tiny	1399	high	3877476	chromoarm	273	no-CHH	no-CHH	.	.	.	.	.
Chr5	15097077	15097141	AT5TE54585	.	+	ATLINE1_3A	L1	LINE	64	tiny	160	medium	3878675	chromoarm	0	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	15101531	15101937	AT5TE54595	.	-	ATTIRX1C	.	DNA	406	short	39	low	3883129	chromoarm	301	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15104660	15104937	AT5TE54605	.	-	ATMUNX1	MuDR	DNA	277	short	155	medium	3886258	chromoarm	1009	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	15105493	15105644	AT5TE54610	.	-	ATHATN4	HAT	DNA	151	short	56	medium	3887091	chromoarm	1667	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	15105644	15107012	AT5TE54615	.	-	ARNOLDY2	MuDR	DNA	1368	short	288	high	3887242	chromoarm	299	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	15107031	15107126	AT5TE54620	.	-	ATHATN4	HAT	DNA	95	tiny	56	medium	3888629	chromoarm	185	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	15109642	15109672	AT5TE54625	.	+	ATREP4	Helitron	RC	30	tiny	832	high	3891240	chromoarm	822	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	15109672	15109871	AT5TE54630	.	+	BRODYAGA1A	MuDR	DNA	199	short	586	high	3891270	chromoarm	852	no-RdDM	no-CHH	.	.	.	.	.
Chr5	15109871	15111000	AT5TE54635	.	-	HELITRONY3	Helitron	RC	1129	short	1399	high	3891469	chromoarm	1051	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15111000	15111137	AT5TE54640	.	-	HELITRONY3	Helitron	RC	137	short	1399	high	3892598	chromoarm	2180	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	15111925	15112259	AT5TE54645	.	+	ATMUNX1	MuDR	DNA	334	short	155	medium	3893523	chromoarm	3105	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	15113467	15114305	AT5TE54650	.	+	BRODYAGA2	MuDR	DNA	838	short	525	high	3895065	chromoarm	1788	no-CHH	no-CHH	.	.	.	.	.
Chr5	15114305	15114351	AT5TE54655	.	+	BRODYAGA1	MuDR	DNA	46	tiny	251	high	3895903	chromoarm	1742	no-CHH	no-CHH	.	.	.	.	.
Chr5	15115336	15115993	AT5TE54660	.	+	HELITRONY3	Helitron	RC	657	short	1399	high	3896934	chromoarm	100	no-CHH	no-CHH	.	.	.	.	.
Chr5	15118647	15119380	AT5TE54665	.	+	HELITRONY3	Helitron	RC	733	short	1399	high	3900245	chromoarm	1030	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	15118675	15119065	AT5TE54670	.	-	BRODYAGA1A	MuDR	DNA	390	short	586	high	3900273	chromoarm	1058	no-CHH	no-CHH	.	.	.	.	.
Chr5	15119380	15119606	AT5TE54675	.	+	ATMU10	MuDR	DNA	226	short	87	medium	3900978	chromoarm	1763	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	15119606	15119712	AT5TE54680	.	-	ATMU10	MuDR	DNA	106	short	87	medium	3901204	chromoarm	1725	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	15119712	15119844	AT5TE54685	.	-	ATMU10	MuDR	DNA	132	short	87	medium	3901310	chromoarm	1593	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	15120920	15121157	AT5TE54690	.	+	ATHATN8	HAT	DNA	237	short	15	low	3902518	chromoarm	280	no-CHH	no-CHH	.	.	.	.	.
Chr5	15122089	15122814	AT5TE54695	.	-	ATREP10D	Helitron	RC	725	short	1295	high	3903687	chromoarm	253	no-CHH	no-CHH	.	.	.	.	.
Chr5	15125511	15125983	AT5TE54700	.	+	ATLINEIII	L1	LINE	472	short	196	medium	3907109	chromoarm	827	no-CHH	no-CHH	.	.	.	.	.
Chr5	15127032	15127444	AT5TE54705	.	-	ATLINEIII	L1	LINE	412	short	196	medium	3908630	chromoarm	2348	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	15127523	15127779	AT5TE54710	.	-	HELITRONY1B	Helitron	RC	256	short	414	high	3909121	chromoarm	2839	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	15129008	15130774	AT5TE54715	.	+	ATREP3	Helitron	RC	1766	short	1439	high	3910606	chromoarm	630	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15130774	15131225	AT5TE54720	.	+	ATREP10B	Helitron	RC	451	short	491	high	3912372	chromoarm	179	no-CHH	no-CHH	.	.	.	.	.
Chr5	15136620	15137452	AT5TE54730	.	-	ATREP10A	Helitron	RC	832	short	279	high	3918218	chromoarm	1172	no-CHH	no-CHH	.	.	.	.	.
Chr5	15137452	15138822	AT5TE54735	.	-	ATREP11	Helitron	RC	1370	short	841	high	3919050	chromoarm	2004	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15138822	15138848	AT5TE54740	.	-	ATREP11	Helitron	RC	26	tiny	841	high	3920420	chromoarm	2961	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	15138848	15139023	AT5TE54745	.	-	ATREP10D	Helitron	RC	175	short	1295	high	3920446	chromoarm	2786	no-CHH	no-CHH	.	.	.	.	.
Chr5	15139317	15139394	AT5TE54750	.	-	ATREP3	Helitron	RC	77	tiny	1439	high	3920915	chromoarm	2415	no-CHH	no-CHH	.	.	.	.	.
Chr5	15139394	15140550	AT5TE54755	.	-	ATREP15	Helitron	RC	1156	short	1003	high	3920992	chromoarm	1259	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	15141082	15141153	AT5TE54760	.	+	TAT1_ATH	Gypsy	LTR	71	tiny	87	medium	3922680	chromoarm	656	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15143604	15144360	AT5TE54765	.	+	ATMUN1	MuDR	DNA	756	short	107	medium	3925202	chromoarm	237	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15144628	15144703	AT5TE54770	.	-	HELITRONY1D	Helitron	RC	75	tiny	756	high	3926226	chromoarm	1261	no-CHH	no-CHH	.	.	.	.	.
Chr5	15144703	15144915	AT5TE54775	.	-	ATREP10D	Helitron	RC	212	short	1295	high	3926301	chromoarm	1336	no-CHH	no-CHH	.	.	.	.	.
Chr5	15144915	15145509	AT5TE54780	.	-	TNAT1A	.	DNA	594	short	162	medium	3926513	chromoarm	1548	no-CHH	no-CHH	.	.	.	.	.
Chr5	15145509	15146304	AT5TE54785	.	+	TNAT1A	.	DNA	795	short	162	medium	3927107	chromoarm	2142	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	15146306	15148036	AT5TE54790	.	+	HELITRONY1A	Helitron	RC	1730	short	271	high	3927904	chromoarm	2939	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15148036	15148084	AT5TE54795	.	+	ATHPOGON3	Pogo	DNA	48	tiny	118	medium	3929634	chromoarm	4669	DCL3-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	15148084	15148492	AT5TE54800	.	+	ATREP10D	Helitron	RC	408	short	1295	high	3929682	chromoarm	4717	no-RdDM	no-CHH	.	.	.	.	.
Chr5	15148492	15151482	AT5TE54805	.	+	ATREP10D	Helitron	RC	2990	medium	1295	high	3930090	chromoarm	5125	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	15151482	15152120	AT5TE54810	.	-	HELITRONY3	Helitron	RC	638	short	1399	high	3933080	chromoarm	6221	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	15152120	15152631	AT5TE54815	.	+	ATREP10B	Helitron	RC	511	short	491	high	3933718	chromoarm	5710	no-CHH	no-CHH	.	.	.	.	.
Chr5	15152631	15153464	AT5TE54820	.	-	HELITRONY1B	Helitron	RC	833	short	414	high	3934229	chromoarm	4877	no-CHH	no-CHH	.	.	.	.	.
Chr5	15153464	15153498	AT5TE54825	.	-	BRODYAGA2	MuDR	DNA	34	tiny	525	high	3935062	chromoarm	4843	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	15153498	15153729	AT5TE54830	.	+	ATREP4	Helitron	RC	231	short	832	high	3935096	chromoarm	4612	no-CHH	no-CHH	.	.	.	.	.
Chr5	15153729	15154301	AT5TE54835	.	-	TNAT1A	.	DNA	572	short	162	medium	3935327	chromoarm	4040	no-CHH	no-CHH	.	.	.	.	.
Chr5	15154301	15154394	AT5TE54840	.	-	ARNOLDY1	MuDR	DNA	93	tiny	237	high	3935899	chromoarm	3947	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	15156467	15156783	AT5TE54845	.	+	ATDNA2T9A	MuDR	DNA	316	short	48	low	3938065	chromoarm	1558	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	15156783	15156881	AT5TE54850	.	+	ATREP1	Helitron	RC	98	tiny	498	high	3938381	chromoarm	1460	no-CHH	no-CHH	.	.	.	.	.
Chr5	15156881	15157833	AT5TE54855	.	-	ATREP3	Helitron	RC	952	short	1439	high	3938479	chromoarm	508	no-CHH	no-CHH	.	.	.	.	.
Chr5	15160624	15160706	AT5TE54865	.	-	HELITRONY3	Helitron	RC	83	tiny	1399	high	3942221	chromoarm	505	.	.	.	.	.	.	.
Chr5	15160706	15161496	AT5TE54870	.	-	ATREP4	Helitron	RC	790	short	832	high	3942304	chromoarm	588	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	15161496	15163864	AT5TE54875	.	+	ATREP1	Helitron	RC	2368	medium	498	high	3943094	chromoarm	1378	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15163864	15164095	AT5TE54880	.	+	ATDNA2T9C	MuDR	DNA	231	short	242	high	3945462	chromoarm	1857	no-CHH	no-CHH	.	.	.	.	.
Chr5	15166614	15166664	AT5TE54885	.	+	RathE2_cons	.	RathE2_cons	50	tiny	74	medium	3948212	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	15168724	15171244	AT5TE54890	.	+	ATREP10D	Helitron	RC	2520	medium	1295	high	3950322	chromoarm	241	no-CHH	no-CHH	.	.	.	.	.
Chr5	15171244	15171359	AT5TE54895	.	+	ATREP6	Helitron	RC	115	short	181	medium	3952842	chromoarm	126	no-CHH	no-CHH	.	.	.	.	.
Chr5	15175727	15180971	AT5TE54905	.	+	ATCOPIA87	Copia	LTR	5244	long	19	low	3957325	chromoarm	425	no-CHH	no-CHH	.	.	.	.	.
Chr5	15181054	15181978	AT5TE54910	.	-	ATREP4	Helitron	RC	924	short	832	high	3962652	chromoarm	3098	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	15181978	15182014	AT5TE54915	.	+	ATREP15	Helitron	RC	36	tiny	1003	high	3963576	chromoarm	3062	no-CHH	no-CHH	.	.	.	.	.
Chr5	15182014	15183251	AT5TE54920	.	-	HELITRONY3	Helitron	RC	1237	short	1399	high	3963612	chromoarm	1825	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	15183251	15184582	AT5TE54925	.	-	SIMPLEHAT2	HAT	DNA	1331	short	73	medium	3964849	chromoarm	494	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15184582	15184724	AT5TE54930	.	-	HELITRONY3	Helitron	RC	142	short	1399	high	3966180	chromoarm	352	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	15192031	15192078	AT5TE54960	.	+	TNAT1A	.	DNA	47	tiny	162	medium	3973629	chromoarm	0	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	15192780	15193359	AT5TE54965	.	+	BRODYAGA2	MuDR	DNA	579	short	525	high	3974378	chromoarm	106	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	15193359	15193383	AT5TE54970	.	-	ATREP19	.	DNA	24	tiny	189	medium	3974957	chromoarm	82	no-CHH	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	15194060	15194241	AT5TE54975	.	-	HELITRONY3	Helitron	RC	181	short	1399	high	3975658	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	15194241	15197415	AT5TE54980	.	+	HELITRONY3	Helitron	RC	3174	medium	1399	high	3975839	chromoarm	152	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	15197415	15197470	AT5TE54985	.	-	HELITRONY3	Helitron	RC	55	tiny	1399	high	3979013	chromoarm	2313	no-CHH	no-CHH	.	.	.	.	.
Chr5	15197470	15198077	AT5TE54990	.	-	HELITRONY3	Helitron	RC	607	short	1399	high	3979068	chromoarm	1706	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15199469	15199688	AT5TE54995	.	-	ATREP3	Helitron	RC	219	short	1439	high	3981067	chromoarm	95	no-CHH	no-CHH	.	.	.	.	.
Chr5	15203161	15203379	AT5TE55005	.	-	ATDNA12T3_2	.	DNA	218	short	660	high	3984759	chromoarm	1993	no-CHH	no-CHH	.	.	.	.	.
Chr5	15203570	15203809	AT5TE55010	.	-	RP1_AT	.	DNA	240	short	87	medium	3985167	chromoarm	2401	.	.	.	.	.	.	.
Chr5	15205084	15205108	AT5TE55015	.	-	ARNOLDY2	MuDR	DNA	24	tiny	288	high	3986682	chromoarm	3534	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15205108	15207898	AT5TE55020	.	+	ARNOLDY1	MuDR	DNA	2790	medium	237	high	3986706	chromoarm	744	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15207898	15208060	AT5TE55025	.	+	TNAT1A	.	DNA	162	short	162	medium	3989496	chromoarm	582	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	15208060	15208148	AT5TE55030	.	-	ARNOLDY1	MuDR	DNA	88	tiny	237	high	3989658	chromoarm	494	no-CHH	no-RdDM	.	.	.	.	.
Chr5	15208148	15208275	AT5TE55035	.	+	ARNOLDY2	MuDR	DNA	127	short	288	high	3989746	chromoarm	367	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr5	15216568	15216977	AT5TE55060	.	-	ATDNA2T9C	MuDR	DNA	409	short	242	high	3998166	chromoarm	431	no-CHH	no-CHH	.	.	.	.	.
Chr5	15219483	15219596	AT5TE55065	.	+	ATLINE1A	L1	LINE	113	short	289	high	4001081	chromoarm	139	no-CHH	no-CHH	.	.	.	.	.
Chr5	15226394	15226690	AT5TE55090	.	-	ATMU10	MuDR	DNA	296	short	87	medium	4007992	chromoarm	247	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15228320	15228471	AT5TE55095	.	+	RathE1_cons	.	RathE1_cons	151	short	213	high	4009918	chromoarm	292	no-CHH	no-CHH	.	.	.	.	.
Chr5	15228490	15228596	AT5TE55100	.	-	BRODYAGA1A	MuDR	DNA	106	short	586	high	4010088	chromoarm	462	no-CHH	no-CHH	.	.	.	.	.
Chr5	15228596	15229024	AT5TE55105	.	-	SIMPLEGUY1	Harbinger	DNA	428	short	116	medium	4010194	chromoarm	568	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	15229190	15229464	AT5TE55110	.	+	ATLINEIII	L1	LINE	274	short	196	medium	4010788	chromoarm	391	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	15230148	15230777	AT5TE55115	.	+	ATREP1	Helitron	RC	629	short	498	high	4011746	chromoarm	5	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	15231204	15231357	AT5TE55120	.	-	ATREP11	Helitron	RC	153	short	841	high	4012802	chromoarm	1061	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15231364	15231781	AT5TE55125	.	+	ATREP3	Helitron	RC	417	short	1439	high	4012962	chromoarm	1221	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	15232550	15233347	AT5TE55130	.	-	ATLINEIII	L1	LINE	797	short	196	medium	4014148	chromoarm	840	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	15237690	15237838	AT5TE55140	.	+	VANDAL7	MuDR	DNA	148	short	36	low	4019288	chromoarm	0	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	15234001,15234006	15238027,15238028	+,+	transcript_id-"14cafccd-2ffb-426f-8af3-1d72b0232c8d|71",transcript_id-"1e9cb911-cd0d-47a9-b1ee-c044ff1b439b|3"
Chr5	15238561	15241776	AT5TE55145	.	-	ATLANTYS2	Gypsy	LTR	3215	medium	179	medium	4020159	chromoarm	655	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	15241776	15241929	AT5TE55150	.	-	ATLANTYS2	Gypsy	LTR	153	short	179	medium	4023374	chromoarm	3870	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	15241968	15243165	AT5TE55155	.	-	ATLANTYS1	Gypsy	LTR	1197	short	153	medium	4023566	chromoarm	3825	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	15243165	15244248	AT5TE55160	.	-	ATLANTYS3	Gypsy	LTR	1083	short	142	medium	4024763	chromoarm	2742	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	15245306	15245800	AT5TE55165	.	-	BRODYAGA1A	MuDR	DNA	494	short	586	high	4026904	chromoarm	1190	no-CHH	no-CHH	.	.	.	.	.
Chr5	15249592	15250008	AT5TE55175	.	-	ATLINE2	L1	LINE	416	short	138	medium	4031190	chromoarm	1015	no-CHH	no-CHH	.	.	.	.	.
Chr5	15254513	15256056	AT5TE55185	.	+	ATREP10D	Helitron	RC	1543	short	1295	high	4036111	chromoarm	326	no-CHH	no-CHH	.	.	.	.	.
Chr5	15258788	15258877	AT5TE55195	.	+	ATLINE1A	L1	LINE	89	tiny	289	high	4040386	chromoarm	314	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	15259488	15260791	AT5TE55200	.	-	HELITRONY1D	Helitron	RC	1303	short	756	high	4041086	chromoarm	243	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15265416	15265670	AT5TE55210	.	-	ATREP10B	Helitron	RC	254	short	491	high	4047014	chromoarm	40	no-CHH	no-CHH	.	.	.	.	.
Chr5	15265671	15266274	AT5TE55215	.	-	ATREP10A	Helitron	RC	604	short	279	high	4047268	chromoarm	294	.	.	.	.	.	.	.
Chr5	15266274	15266981	AT5TE55220	.	-	ATREP10D	Helitron	RC	707	short	1295	high	4047872	chromoarm	898	no-CHH	no-CHH	.	.	.	.	.
Chr5	15266981	15267231	AT5TE55225	.	+	ATMUNX1	MuDR	DNA	250	short	155	medium	4048579	chromoarm	1605	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	15267231	15267643	AT5TE55230	.	+	HELITRONY2	Helitron	RC	412	short	198	medium	4048829	chromoarm	1368	no-CHH	no-CHH	.	.	.	.	.
Chr5	15267643	15268498	AT5TE55235	.	-	ATREP8	Helitron	RC	855	short	75	medium	4049241	chromoarm	513	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15268498	15268650	AT5TE55240	.	-	ATREP9	Helitron	RC	152	short	201	high	4050096	chromoarm	361	no-CHH	no-CHH	.	.	.	.	.
Chr5	15271168	15271399	AT5TE55245	.	-	ATREP3	Helitron	RC	231	short	1439	high	4052766	chromoarm	28	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	15271400	15272022	AT5TE55250	.	+	ATHPOGON1	Pogo	DNA	623	short	174	medium	4052997	chromoarm	259	.	.	LowExpressed	.	.	.	.
Chr5	15272022	15272605	AT5TE55255	.	+	ATREP10C	Helitron	RC	583	short	123	medium	4053620	chromoarm	882	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	15274824	15274856	AT5TE55260	.	+	ATENSPM10	En-Spm	DNA	32	tiny	81	medium	4056422	chromoarm	2382	no-CHH	no-CHH	.	.	.	.	.
Chr5	15274856	15276290	AT5TE55265	.	+	ATENSPM10	En-Spm	DNA	1434	short	81	medium	4056454	chromoarm	948	no-CHH	no-CHH	.	.	.	.	.
Chr5	15276309	15277224	AT5TE55270	.	+	ATENSPM11	En-Spm	DNA	915	short	47	low	4057907	chromoarm	14	no-CHH	no-CHH	.	.	.	.	.
Chr5	15286259	15286474	AT5TE55300	.	+	RP1_AT	.	DNA	215	short	87	medium	4067857	chromoarm	422	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	15288433	15288976	AT5TE55305	.	-	ATREP1	Helitron	RC	543	short	498	high	4070031	chromoarm	55	no-CHH	no-CHH	.	.	.	.	.
Chr5	15290172	15290204	AT5TE55310	.	-	ATREP4	Helitron	RC	32	tiny	832	high	4071770	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	15290204	15290259	AT5TE55315	.	-	ATREP3	Helitron	RC	55	tiny	1439	high	4071802	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	15290260	15290943	AT5TE55320	.	-	HELITRONY1B	Helitron	RC	684	short	414	high	4071857	chromoarm	7	.	.	.	.	.	.	.
Chr5	15290945	15290966	AT5TE55325	.	+	ATREP10A	Helitron	RC	21	tiny	279	high	4072543	chromoarm	693	no-CHH	no-RdDM	.	.	.	.	.
Chr5	15291227	15291824	AT5TE55330	.	+	ATCOPIA41	Copia	LTR	597	short	39	low	4072825	chromoarm	975	no-RdDM	no-CHH	.	.	.	.	.
Chr5	15292551	15292798	AT5TE55335	.	+	ATLINE1_5	L1	LINE	248	short	91	medium	4074148	chromoarm	526	.	.	.	.	.	.	.
Chr5	15296062	15296166	AT5TE55345	.	+	ATTIRTA1	Tc1	DNA	104	short	95	medium	4077660	chromoarm	224	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	15296308	15297047	AT5TE55350	.	+	TAG3N1	HAT	DNA	740	short	97	medium	4077905	chromoarm	469	.	.	.	.	.	.	.
Chr5	15298772	15300694	AT5TE55355	.	-	ATLINE1_5	L1	LINE	1922	short	91	medium	4080370	chromoarm	2796	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	15300695	15300718	AT5TE55360	.	-	ATREP5	Helitron	RC	23	tiny	624	high	4082293	chromoarm	2772	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	15300718	15300979	AT5TE55365	.	+	ATTIRTA1	Tc1	DNA	261	short	95	medium	4082316	chromoarm	2511	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	15300979	15301076	AT5TE55370	.	-	ATDNA2T9B	MuDR	DNA	97	tiny	26	low	4082577	chromoarm	2414	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	15301076	15302865	AT5TE55375	.	-	ATDNA2T9B	MuDR	DNA	1789	short	26	low	4082674	chromoarm	625	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15302865	15303125	AT5TE55380	.	-	ATHPOGON1	Pogo	DNA	260	short	174	medium	4084463	chromoarm	365	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15303125	15303307	AT5TE55385	.	-	ATHPOGON1	Pogo	DNA	182	short	174	medium	4084723	chromoarm	183	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	15303307	15303352	AT5TE55390	.	-	ATREP4	Helitron	RC	45	tiny	832	high	4084905	chromoarm	138	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	15307245	15307364	AT5TE55400	.	-	ATLINE1_3A	L1	LINE	119	short	160	medium	4088843	chromoarm	432	no-CHH	no-CHH	.	.	.	.	.
Chr5	15308356	15308611	AT5TE55405	.	+	ATLINE1_6	L1	LINE	255	short	129	medium	4089954	chromoarm	1543	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15327563	15328627	AT5TE55470	.	+	ATDNA2T9C	MuDR	DNA	1064	short	242	high	4109161	chromoarm	31	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15333580	15333639	AT5TE55480	.	-	ATREP4	Helitron	RC	59	tiny	832	high	4115178	chromoarm	24	no-CHH	no-CHH	.	.	.	.	.
Chr5	15333640	15334033	AT5TE55485	.	-	BRODYAGA1A	MuDR	DNA	394	short	586	high	4115237	chromoarm	83	.	.	.	.	.	.	.
Chr5	15334172	15339896	AT5TE55490	.	+	Unassigned	.	Unassigned	5724	long	.	low	4115770	chromoarm	496	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	15341290	15341594	AT5TE55495	.	+	ATHATN7	HAT	DNA	304	short	71	medium	4122888	chromoarm	595	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15341594	15342781	AT5TE55500	.	-	ATREP3	Helitron	RC	1187	short	1439	high	4123192	chromoarm	899	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15342781	15342819	AT5TE55505	.	-	ATREP3	Helitron	RC	38	tiny	1439	high	4124379	chromoarm	1628	no-CHH	no-CHH	.	.	.	.	.
Chr5	15342819	15342940	AT5TE55510	.	+	ATREP10D	Helitron	RC	121	short	1295	high	4124417	chromoarm	1507	no-CHH	no-CHH	.	.	.	.	.
Chr5	15350061	15350135	AT5TE55540	.	-	ATN9_1	MuDR	DNA	74	tiny	65	medium	4131659	chromoarm	1844	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15350178	15350316	AT5TE55545	.	+	ATENSPM9	En-Spm	DNA	139	short	97	medium	4131775	chromoarm	1960	.	.	.	.	.	.	.
Chr5	15350950	15350990	AT5TE55550	.	+	ATHILA7A	Gypsy	LTR	40	tiny	31	low	4132548	chromoarm	2733	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	15350990	15362721	AT5TE55555	.	+	ATHILA7	Gypsy	LTR	11731	long	134	medium	4132588	chromoarm	456	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	15361834	15363667	+	transcript_id-"484de08a-29bf-4639-acec-6598813db228|5"
Chr5	15362721	15362804	AT5TE55560	.	+	ATHILA7	Gypsy	LTR	83	tiny	134	medium	4144319	chromoarm	373	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	15372819	15373029	AT5TE55600	.	-	ATCOPIA81	Copia	LTR	210	short	6	low	4154417	chromoarm	64	no-CHH	no-CHH	.	.	.	.	.
Chr5	15383222	15383913	AT5TE55640	.	-	ATLINE1_3A	L1	LINE	691	short	160	medium	4164820	chromoarm	436	no-CHH	no-CHH	.	.	.	.	.
Chr5	15383913	15383934	AT5TE55645	.	-	ATLINEIII	L1	LINE	21	tiny	196	medium	4165511	chromoarm	415	no-CHH	no-CHH	.	.	.	.	.
Chr5	15385431	15385582	AT5TE55650	.	-	ATREP3	Helitron	RC	151	short	1439	high	4167029	chromoarm	276	no-CHH	RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	15385584	15387960	AT5TE55655	.	-	ATREP5	Helitron	RC	2376	medium	624	high	4167182	chromoarm	119	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	15387960	15388054	AT5TE55660	.	+	ATREP11	Helitron	RC	94	tiny	841	high	4169558	chromoarm	25	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	15388779	15389722	AT5TE55665	.	+	ATCOPIA22	Copia	LTR	943	short	14	low	4170377	chromoarm	301	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	15391382	15391742	AT5TE55670	.	-	ATCOPIA37	Copia	LTR	360	short	32	low	4172980	chromoarm	758	no-CHH	no-CHH	.	.	.	.	.
Chr5	15402853	15402904	AT5TE55710	.	-	ATHAT2	HAT	DNA	51	tiny	19	low	4184451	chromoarm	1815	no-CHH	no-CHH	.	.	.	.	.
Chr5	15402904	15404219	AT5TE55715	.	-	ATREP15	Helitron	RC	1315	short	1003	high	4184502	chromoarm	500	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	15404219	15404257	AT5TE55720	.	+	ATREP11	Helitron	RC	38	tiny	841	high	4185817	chromoarm	462	no-RdDM	no-CHH	.	.	.	.	.
Chr5	15404257	15404429	AT5TE55725	.	+	ATREP5	Helitron	RC	172	short	624	high	4185855	chromoarm	290	no-CHH	no-CHH	.	.	.	.	.
Chr5	15408568	15409487	AT5TE55735	.	+	ARNOLDY2	MuDR	DNA	919	short	288	high	4190166	chromoarm	789	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15409487	15409515	AT5TE55740	.	+	ATREP3	Helitron	RC	28	tiny	1439	high	4191085	chromoarm	761	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	15428648	15429823	AT5TE55810	.	-	ATREP5	Helitron	RC	1175	short	624	high	4210246	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15429823	15430195	AT5TE55815	.	-	ATDNA2T9C	MuDR	DNA	372	short	242	high	4211421	chromoarm	1113	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15431133	15431478	AT5TE55820	.	+	BRODYAGA1A	MuDR	DNA	345	short	586	high	4212731	chromoarm	1486	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	15431866	15432029	AT5TE55825	.	-	TAG2	HAT	DNA	163	short	86	medium	4213464	chromoarm	935	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	15432050	15432540	AT5TE55830	.	+	SIMPLEGUY1	Harbinger	DNA	490	short	116	medium	4213648	chromoarm	424	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15432556	15432715	AT5TE55835	.	-	TAG2	HAT	DNA	159	short	86	medium	4214154	chromoarm	249	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15436124	15436472	AT5TE55845	.	+	ATLINE2	L1	LINE	348	short	138	medium	4217722	chromoarm	703	no-CHH	no-CHH	.	.	.	.	.
Chr5	15436597	15436798	AT5TE55850	.	+	TAG3N1	HAT	DNA	201	short	97	medium	4218195	chromoarm	1176	no-CHH	no-CHH	.	.	.	.	.
Chr5	15436798	15437176	AT5TE55855	.	-	ATREP5	Helitron	RC	378	short	624	high	4218396	chromoarm	1377	no-CHH	no-CHH	.	.	.	.	.
Chr5	15437181	15437960	AT5TE55860	.	+	TAG3N1	HAT	DNA	779	short	97	medium	4218779	chromoarm	1760	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15439856	15440136	AT5TE55865	.	+	ATENSPM1A	En-Spm	DNA	280	short	77	medium	4221454	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	15446487	15446538	AT5TE55880	.	-	BRODYAGA1A	MuDR	DNA	51	tiny	586	high	4228085	chromoarm	478	no-CHH	no-CHH	.	.	.	.	.
Chr5	15446539	15447111	AT5TE55885	.	-	ATHPOGO	Pogo	DNA	573	short	25	low	4228136	chromoarm	529	.	.	.	.	.	.	.
Chr5	15447111	15447210	AT5TE55890	.	-	BRODYAGA1A	MuDR	DNA	99	tiny	586	high	4228709	chromoarm	1102	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	15447210	15447257	AT5TE55895	.	-	HELITRONY1D	Helitron	RC	47	tiny	756	high	4228808	chromoarm	1201	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	15447373	15447573	AT5TE55900	.	-	HELITRONY3A	Helitron	RC	200	short	49	low	4228971	chromoarm	1364	PolIV-and-RDR6-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	15453978	15454016	AT5TE55920	.	+	ATMU6	MuDR	DNA	38	tiny	26	low	4235576	chromoarm	523	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	15454016	15455706	AT5TE55925	.	-	ATMU6	MuDR	DNA	1690	short	26	low	4235614	chromoarm	561	no-RdDM	no-RdDM	ExpressedAndAnnotated	15455482	15455024	-	transcript_id-"ceeb50eb-9feb-49f9-aa3b-ff43928fffe9|5"
Chr5	15461637	15462603	AT5TE55940	.	+	ATREP15	Helitron	RC	966	short	1003	high	4243235	chromoarm	193	no-CHH	no-CHH	.	.	.	.	.
Chr5	15465144	15465259	AT5TE55945	.	+	BRODYAGA1A	MuDR	DNA	115	short	586	high	4246742	chromoarm	237	no-CHH	no-CHH	.	.	.	.	.
Chr5	15465259	15465776	AT5TE55950	.	+	ATREP10D	Helitron	RC	517	short	1295	high	4246857	chromoarm	352	no-CHH	no-CHH	.	.	.	.	.
Chr5	15483180	15483268	AT5TE56010	.	-	ATREP11A	Helitron	RC	88	tiny	95	medium	4264778	chromoarm	188	no-CHH	no-CHH	.	.	.	.	.
Chr5	15483268	15485638	AT5TE56015	.	-	HELITRONY1B	Helitron	RC	2370	medium	414	high	4264866	chromoarm	276	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15488691	15489191	AT5TE56025	.	+	ATLINE2	L1	LINE	500	short	138	medium	4270289	chromoarm	498	no-CHH	no-CHH	.	.	.	.	.
Chr5	15490819	15498653	AT5TE56030	.	-	ATGP1	Gypsy	LTR	7834	long	144	medium	4272417	chromoarm	581	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	15491840	15490912	-	transcript_id-"aa81db0b-0b7a-4e1e-aa65-46be6de9fb2e|5"
Chr5	15500475	15501241	AT5TE56035	.	+	ATMUN1	MuDR	DNA	766	short	107	medium	4282073	chromoarm	98	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	15504767	15505692	AT5TE56045	.	+	ARNOLDY2	MuDR	DNA	925	short	288	high	4286365	chromoarm	868	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	15505692	15505806	AT5TE56050	.	+	ATDNA2T9A	MuDR	DNA	114	short	48	low	4287290	chromoarm	1793	no-CHH	no-CHH	.	.	.	.	.
Chr5	15507706	15508062	AT5TE56055	.	-	ATREP12	Helitron	RC	356	short	22	low	4289304	chromoarm	354	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	15514429	15514586	AT5TE56070	.	+	ATHATN6	HAT	DNA	157	short	43	low	4296027	chromoarm	124	no-CHH	no-CHH	.	.	.	.	.
Chr5	15521706	15522560	AT5TE56100	.	-	ATREP5	Helitron	RC	854	short	624	high	4303304	chromoarm	89	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	15523579	15523798	AT5TE56105	.	-	ATREP3	Helitron	RC	219	short	1439	high	4305177	chromoarm	399	no-CHH	no-CHH	.	.	.	.	.
Chr5	15527151	15527225	AT5TE56115	.	-	ATDNA2T9C	MuDR	DNA	74	tiny	242	high	4308749	chromoarm	744	no-CHH	no-CHH	.	.	.	.	.
Chr5	15527225	15527265	AT5TE56120	.	-	ATREP10D	Helitron	RC	40	tiny	1295	high	4308823	chromoarm	818	no-CHH	no-CHH	.	.	.	.	.
Chr5	15527265	15528477	AT5TE56125	.	-	ATREP3	Helitron	RC	1212	short	1439	high	4308863	chromoarm	858	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	15528477	15528786	AT5TE56130	.	-	ARNOLDY2	MuDR	DNA	309	short	288	high	4310075	chromoarm	1298	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	15528786	15528912	AT5TE56135	.	+	HELITRONY1B	Helitron	RC	126	short	414	high	4310384	chromoarm	1172	no-CHH	no-CHH	.	.	.	.	.
Chr5	15532918	15533168	AT5TE56145	.	-	ARNOLDY2	MuDR	DNA	250	short	288	high	4314516	chromoarm	616	no-CHH	no-CHH	.	.	.	.	.
Chr5	15534914	15535129	AT5TE56150	.	-	HELITRONY1B	Helitron	RC	215	short	414	high	4316512	chromoarm	734	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	15535129	15536041	AT5TE56155	.	-	ATREP1	Helitron	RC	912	short	498	high	4316727	chromoarm	949	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15536050	15536137	AT5TE56160	.	-	RathE1_cons	.	RathE1_cons	88	tiny	213	high	4317647	chromoarm	1869	.	.	.	.	.	.	.
Chr5	15548336	15549499	AT5TE56210	.	-	ATREP4	Helitron	RC	1163	short	832	high	4329934	chromoarm	242	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15549499	15550193	AT5TE56215	.	-	ATREP9	Helitron	RC	694	short	201	high	4331097	chromoarm	1135	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	15561739	15561758	AT5TE56250	.	+	ATMU10	MuDR	DNA	20	tiny	87	medium	4343336	chromoarm	827	.	.	LowExpressed	.	.	.	.
Chr5	15561758	15562162	AT5TE56255	.	-	VANDAL17	MuDR	DNA	404	short	178	medium	4343356	chromoarm	847	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	15576014	15576137	AT5TE56300	.	-	HELITRONY3	Helitron	RC	123	short	1399	high	4357612	chromoarm	1069	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr5	15576137	15576180	AT5TE56305	.	-	ATREP3	Helitron	RC	43	tiny	1439	high	4357735	chromoarm	1192	no-CHH	no-CHH	.	.	.	.	.
Chr5	15576180	15576208	AT5TE56310	.	-	ATREP3	Helitron	RC	28	tiny	1439	high	4357778	chromoarm	1235	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15576208	15577492	AT5TE56315	.	-	ATREP3	Helitron	RC	1284	short	1439	high	4357806	chromoarm	1263	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	15577492	15577704	AT5TE56320	.	+	HELITRONY1B	Helitron	RC	212	short	414	high	4359090	chromoarm	1106	no-CHH	no-CHH	.	.	.	.	.
Chr5	15580638	15580718	AT5TE56330	.	+	ATHATN8	HAT	DNA	80	tiny	15	low	4362236	chromoarm	1000	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	15580808	15580911	AT5TE56335	.	+	ATREP2	Helitron	RC	103	short	164	medium	4362406	chromoarm	807	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15580911	15581608	AT5TE56340	.	+	ATREP2	Helitron	RC	697	short	164	medium	4362509	chromoarm	110	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15583457	15583530	AT5TE56345	.	-	ATREP1	Helitron	RC	73	tiny	498	high	4365055	chromoarm	1018	no-CHH	no-CHH	.	.	.	.	.
Chr5	15583530	15583615	AT5TE56350	.	+	ARNOLDY1	MuDR	DNA	85	tiny	237	high	4365128	chromoarm	1091	no-CHH	no-CHH	.	.	.	.	.
Chr5	15583615	15583700	AT5TE56355	.	+	ARNOLDY2	MuDR	DNA	85	tiny	288	high	4365213	chromoarm	1176	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	15583700	15584997	AT5TE56360	.	-	ARNOLDY2	MuDR	DNA	1297	short	288	high	4365298	chromoarm	75	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15584997	15585074	AT5TE56365	.	-	HELITRONY3	Helitron	RC	77	tiny	1399	high	4366595	chromoarm	0	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	15587154	15587500	AT5TE56370	.	-	ATCOPIA32	Copia	LTR	346	short	8	low	4368752	chromoarm	1270	no-CHH	no-CHH	.	.	.	.	.
Chr5	15587500	15587839	AT5TE56375	.	+	ATCOPIA26	Copia	LTR	339	short	19	low	4369098	chromoarm	931	no-CHH	no-CHH	.	.	.	.	.
Chr5	15590036	15590152	AT5TE56380	.	-	RathE2_cons	.	RathE2_cons	116	short	74	medium	4371634	chromoarm	510	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	15591360	15592061	AT5TE56385	.	-	ATLINE2	L1	LINE	701	short	138	medium	4372958	chromoarm	310	PolIV-and-RDR6-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	15599608	15600049	AT5TE56410	.	+	ATCOPIA75	Copia	LTR	441	short	20	low	4381206	chromoarm	1834	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	15601038	15601491	AT5TE56415	.	-	ATCOPIA69	Copia	LTR	453	short	25	low	4382636	chromoarm	3264	no-RdDM	no-CHH	.	.	.	.	.
Chr5	15603036	15603359	AT5TE56420	.	+	ATSINE2A	.	SINE	323	short	33	low	4384634	chromoarm	3467	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	15604272	15604492	AT5TE56425	.	+	ATREP1	Helitron	RC	220	short	498	high	4385870	chromoarm	2334	no-CHH	no-CHH	.	.	.	.	.
Chr5	15604492	15604514	AT5TE56430	.	-	HELITRONY3	Helitron	RC	22	tiny	1399	high	4386090	chromoarm	2312	no-CHH	no-CHH	.	.	.	.	.
Chr5	15604514	15606642	AT5TE56435	.	-	ATREP3	Helitron	RC	2128	medium	1439	high	4386112	chromoarm	184	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	15606642	15606667	AT5TE56440	.	+	ATREP3	Helitron	RC	25	tiny	1439	high	4388240	chromoarm	159	RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	15606667	15606706	AT5TE56445	.	+	ATREP3	Helitron	RC	39	tiny	1439	high	4388265	chromoarm	120	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	15606706	15606768	AT5TE56450	.	+	ATREP10D	Helitron	RC	62	tiny	1295	high	4388304	chromoarm	58	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	15608049	15608208	AT5TE56455	.	-	ATHILA7	Gypsy	LTR	159	short	134	medium	4389647	chromoarm	615	no-CHH	no-CHH	.	.	.	.	.
Chr5	15608208	15608473	AT5TE56460	.	+	HELITRONY1B	Helitron	RC	265	short	414	high	4389806	chromoarm	350	no-CHH	no-CHH	.	.	.	.	.
Chr5	15615272	15615952	AT5TE56490	.	+	ATREP3	Helitron	RC	680	short	1439	high	4396870	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	15615387	15615808	AT5TE56495	.	+	ATREP19	.	DNA	421	short	189	medium	4396985	chromoarm	139	no-CHH	no-CHH	.	.	.	.	.
Chr5	15623690	15623900	AT5TE56520	.	+	ATLINE1A	L1	LINE	210	short	289	high	4405288	chromoarm	1204	no-RdDM	no-CHH	.	.	.	.	.
Chr5	15623982	15625333	AT5TE56525	.	+	ATREP4	Helitron	RC	1351	short	832	high	4405580	chromoarm	326	no-CHH	no-CHH	.	.	.	.	.
Chr5	15625333	15625656	AT5TE56530	.	+	ATREP1	Helitron	RC	323	short	498	high	4406931	chromoarm	3	no-CHH	no-CHH	.	.	.	.	.
Chr5	15630135	15630228	AT5TE56540	.	-	ATENSPM2	En-Spm	DNA	93	tiny	114	medium	4411733	chromoarm	514	no-CHH	no-CHH	.	.	.	.	.
Chr5	15636218	15639175	AT5TE56560	.	-	TAG2	HAT	DNA	2957	medium	86	medium	4417816	chromoarm	213	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	15638974	15636315	-	transcript_id-"1f209017-3bde-4360-80a5-a333c46fbbf5|9"
Chr5	15639649	15639819	AT5TE56565	.	-	SIMPLEHAT1	HAT	DNA	170	short	56	medium	4421247	chromoarm	1861	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15639864	15640757	AT5TE56570	.	-	ATHAT1	HAT	DNA	893	short	105	medium	4421462	chromoarm	923	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	15640859	15641039	AT5TE56575	.	-	SIMPLEHAT1	HAT	DNA	180	short	56	medium	4422457	chromoarm	641	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	15643118	15643576	AT5TE56580	.	-	BRODYAGA1A	MuDR	DNA	458	short	586	high	4424716	chromoarm	35	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	15646196	15651173	AT5TE56585	.	-	ATCOPIA25	Copia	LTR	4977	medium	9	low	4427794	chromoarm	1238	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	15651648	15652057	AT5TE56590	.	+	ATREP9	Helitron	RC	409	short	201	high	4433246	chromoarm	1146	no-CHH	no-CHH	.	.	.	.	.
Chr5	15655578	15656752	AT5TE56600	.	+	ATREP5	Helitron	RC	1174	short	624	high	4437176	chromoarm	1049	no-CHH	no-CHH	.	.	.	.	.
Chr5	15656752	15657219	AT5TE56605	.	-	ATREP19	.	DNA	467	short	189	medium	4438350	chromoarm	582	no-CHH	no-CHH	.	.	.	.	.
Chr5	15658760	15658811	AT5TE56610	.	-	ATREP2A	Helitron	RC	51	tiny	116	medium	4440358	chromoarm	176	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	15658811	15659429	AT5TE56615	.	-	ATREP2A	Helitron	RC	618	short	116	medium	4440409	chromoarm	227	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15661520	15662444	AT5TE56620	.	-	ATREP19	.	DNA	924	short	189	medium	4443118	chromoarm	260	no-CHH	no-CHH	.	.	.	.	.
Chr5	15662444	15662642	AT5TE56625	.	+	ATREP5	Helitron	RC	198	short	624	high	4444042	chromoarm	62	no-CHH	no-CHH	.	.	.	.	.
Chr5	15664352	15665233	AT5TE56630	.	-	ATREP15	Helitron	RC	881	short	1003	high	4445950	chromoarm	404	no-CHH	no-CHH	.	.	.	.	.
Chr5	15666791	15667102	AT5TE56635	.	-	ATREP3	Helitron	RC	311	short	1439	high	4448389	chromoarm	70	no-CHH	no-CHH	.	.	.	.	.
Chr5	15671473	15676400	AT5TE56645	.	-	ATCOPIA83	Copia	LTR	4927	medium	7	low	4453071	chromoarm	684	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	15680350	15680660	AT5TE56655	.	-	ATREP3	Helitron	RC	310	short	1439	high	4461948	chromoarm	70	no-CHH	no-CHH	.	.	.	.	.
Chr5	15685037	15689976	AT5TE56665	.	-	ATCOPIA83	Copia	LTR	4939	medium	7	low	4466635	chromoarm	684	no-RdDM	no-CHH	.	.	.	.	.
Chr5	15693927	15694236	AT5TE56675	.	-	ATREP3	Helitron	RC	310	short	1439	high	4475524	chromoarm	70	.	.	.	.	.	.	.
Chr5	15695854	15696180	AT5TE56680	.	+	ATREP15	Helitron	RC	326	short	1003	high	4477452	chromoarm	812	no-CHH	no-CHH	.	.	.	.	.
Chr5	15696180	15697563	AT5TE56685	.	+	HELITRONY3	Helitron	RC	1383	short	1399	high	4477778	chromoarm	1138	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	15699188	15699489	AT5TE56690	.	+	RathE2_cons	.	RathE2_cons	301	short	74	medium	4480786	chromoarm	3741	PolIV-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	15699188	15699490	+	transcript_id-"ba88b681-8569-44b3-85aa-8e57999b8fab|3"
Chr5	15699968	15700019	AT5TE56695	.	-	ATREP3	Helitron	RC	51	tiny	1439	high	4481566	chromoarm	3211	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15700020	15700564	AT5TE56700	.	-	ATREP11	Helitron	RC	545	short	841	high	4481617	chromoarm	2666	.	.	.	.	.	.	.
Chr5	15700565	15700750	AT5TE56705	.	-	ATREP3	Helitron	RC	186	short	1439	high	4482162	chromoarm	2480	.	.	.	.	.	.	.
Chr5	15700778	15701201	AT5TE56710	.	+	ATCOPIA65	Copia	LTR	423	short	34	low	4482376	chromoarm	2029	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	15701201	15701265	AT5TE56715	.	+	ATCOPIA65	Copia	LTR	64	tiny	34	low	4482799	chromoarm	1965	RDR6-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	15702224	15702620	AT5TE56720	.	-	ATHATN4	HAT	DNA	396	short	56	medium	4483822	chromoarm	610	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15704299	15704462	AT5TE56725	.	-	ATLINE1_4	L1	LINE	163	short	102	medium	4485897	chromoarm	300	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	15704750	15705511	AT5TE56730	.	-	ATREP11	Helitron	RC	761	short	841	high	4486348	chromoarm	401	no-CHH	no-CHH	.	.	.	.	.
Chr5	15714549	15714774	AT5TE56760	.	+	HELITRONY1E	Helitron	RC	225	short	447	high	4496147	chromoarm	1546	no-CHH	no-CHH	.	.	.	.	.
Chr5	15714774	15715899	AT5TE56765	.	+	ATREP10D	Helitron	RC	1125	short	1295	high	4496372	chromoarm	1771	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	15715899	15717700	AT5TE56770	.	-	ARNOLDY1	MuDR	DNA	1801	short	237	high	4497497	chromoarm	2896	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15717700	15718221	AT5TE56775	.	-	ARNOLDY2	MuDR	DNA	521	short	288	high	4499298	chromoarm	4697	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	15718226	15722359	AT5TE56780	.	-	ATLINEIII	L1	LINE	4133	medium	196	medium	4499824	chromoarm	2500	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	15727368	15727972	AT5TE56790	.	-	HELITRONY1B	Helitron	RC	604	short	414	high	4508966	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	15728194	15728407	AT5TE56795	.	-	ATMU5	MuDR	DNA	213	short	24	low	4509792	chromoarm	710	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	15732078	15732139	AT5TE56805	.	-	HELITRONY3	Helitron	RC	61	tiny	1399	high	4513676	chromoarm	372	no-CHH	no-CHH	.	.	.	.	.
Chr5	15732139	15733758	AT5TE56810	.	+	HELITRONY1E	Helitron	RC	1619	short	447	high	4513737	chromoarm	433	no-CHH	no-CHH	.	.	.	.	.
Chr5	15733758	15733955	AT5TE56815	.	+	ATREP10D	Helitron	RC	197	short	1295	high	4515356	chromoarm	1915	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	15733955	15735653	AT5TE56820	.	-	ATREP3	Helitron	RC	1698	short	1439	high	4515553	chromoarm	217	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	15741441	15741626	AT5TE56840	.	-	ATCOPIA66	Copia	LTR	185	short	20	low	4523039	chromoarm	927	no-CHH	no-CHH	.	.	.	.	.
Chr5	15742766	15742840	AT5TE56845	.	+	VANDAL3	MuDR	DNA	74	tiny	177	medium	4524364	chromoarm	413	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	15745584	15745727	AT5TE56855	.	+	HELITRON1	Helitron	RC	143	short	130	medium	4527182	chromoarm	541	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr5	15754946	15755061	AT5TE56880	.	-	ATREP10B	Helitron	RC	115	short	491	high	4536544	chromoarm	884	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	15755155	15755849	AT5TE56885	.	+	TAG3N1	HAT	DNA	694	short	97	medium	4536753	chromoarm	449	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15759334	15759671	AT5TE56895	.	+	ATENSPM1A	En-Spm	DNA	337	short	77	medium	4540932	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	15761798	15762338	AT5TE56900	.	+	ATDNA2T9C	MuDR	DNA	540	short	242	high	4543396	chromoarm	1112	no-CHH	no-CHH	.	.	.	.	.
Chr5	15772741	15773227	AT5TE56940	.	-	ATMU6N1	MuDR	DNA	486	short	39	low	4554339	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	15779044	15779840	AT5TE56960	.	+	ATREP11A	Helitron	RC	796	short	95	medium	4560642	chromoarm	1445	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15779840	15779987	AT5TE56965	.	+	ATREP4	Helitron	RC	147	short	832	high	4561438	chromoarm	1919	no-CHH	no-RdDM	.	.	.	.	.
Chr5	15780394	15780659	AT5TE56970	.	-	ATREP10D	Helitron	RC	265	short	1295	high	4561992	chromoarm	1247	no-CHH	no-CHH	.	.	.	.	.
Chr5	15780659	15781278	AT5TE56975	.	+	ATREP3	Helitron	RC	619	short	1439	high	4562257	chromoarm	628	no-CHH	no-CHH	.	.	.	.	.
Chr5	15785032	15785187	AT5TE56985	.	+	ATCOPIA4	Copia	LTR	155	short	11	low	4566630	chromoarm	333	no-CHH	no-CHH	.	.	.	.	.
Chr5	15790992	15791106	AT5TE57000	.	+	ATREP13	Helitron	RC	114	short	106	medium	4572590	chromoarm	845	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15791106	15791849	AT5TE57005	.	+	ATREP13	Helitron	RC	743	short	106	medium	4572704	chromoarm	102	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	15793475	15793931	AT5TE57010	.	+	ATDNA2T9A	MuDR	DNA	456	short	48	low	4575073	chromoarm	33	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	15796923	15797649	AT5TE57020	.	-	HELITRONY1E	Helitron	RC	726	short	447	high	4578521	chromoarm	1327	no-CHH	no-CHH	.	.	.	.	.
Chr5	15800469	15800692	AT5TE57030	.	-	ATLINE1_3A	L1	LINE	223	short	160	medium	4582067	chromoarm	942	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	15808343	15808963	AT5TE57060	.	-	VANDAL1N1	MuDR	DNA	620	short	52	medium	4589941	chromoarm	835	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	15808963	15809059	AT5TE57065	.	+	VANDAL17	MuDR	DNA	96	tiny	178	medium	4590561	chromoarm	1209	no-CHH	no-CHH	.	.	.	.	.
Chr5	15809079	15809837	AT5TE57070	.	+	ATHILA4D_LTR	Gypsy	LTR	758	short	106	medium	4590677	chromoarm	431	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15811602	15811777	AT5TE57075	.	+	ATHATN2	HAT	DNA	175	short	46	low	4593200	chromoarm	935	PolIV-and-RDR6-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	15811777	15812701	AT5TE57080	.	-	HELITRONY3	Helitron	RC	924	short	1399	high	4593375	chromoarm	1110	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	15812702	15812804	AT5TE57085	.	+	HELITRONY3	Helitron	RC	103	short	1399	high	4594299	chromoarm	2034	.	.	LowExpressed	.	.	.	.
Chr5	15813251	15813462	AT5TE57090	.	+	ATHATN2	HAT	DNA	212	short	46	low	4594848	chromoarm	1811	.	.	LowExpressed	.	.	.	.
Chr5	15819972	15820566	AT5TE57110	.	+	ATREP5	Helitron	RC	594	short	624	high	4601570	chromoarm	62	no-CHH	no-CHH	.	.	.	.	.
Chr5	15820566	15821221	AT5TE57115	.	+	ATHATN2	HAT	DNA	655	short	46	low	4602164	chromoarm	656	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15829134	15829208	AT5TE57140	.	+	ATIS112A	Harbinger	DNA	74	tiny	173	medium	4610732	chromoarm	1617	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	15829208	15829349	AT5TE57145	.	+	ATIS112A	Harbinger	DNA	141	short	173	medium	4610806	chromoarm	1691	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	15832032	15833656	AT5TE57150	.	-	ATCOPIA12	Copia	LTR	1624	short	15	low	4613630	chromoarm	86	no-CHH	no-CHH	.	.	.	.	.
Chr5	15841461	15841720	AT5TE57180	.	+	HELITRONY1D	Helitron	RC	259	short	756	high	4623059	chromoarm	164	no-CHH	no-CHH	.	.	.	.	.
Chr5	15843184	15843731	AT5TE57185	.	-	ATREP10D	Helitron	RC	547	short	1295	high	4624782	chromoarm	88	no-CHH	no-CHH	.	.	.	.	.
Chr5	15855385	15855412	AT5TE57220	.	+	ATHPOGON3	Pogo	DNA	27	tiny	118	medium	4636983	chromoarm	614	no-CHH	no-CHH	.	.	.	.	.
Chr5	15855413	15855972	AT5TE57225	.	+	ATREP3	Helitron	RC	560	short	1439	high	4637010	chromoarm	641	.	.	.	.	.	.	.
Chr5	15856052	15856713	AT5TE57230	.	+	ATLANTYS2	Gypsy	LTR	661	short	179	medium	4637650	chromoarm	1281	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15856713	15856783	AT5TE57235	.	+	ATLANTYS3	Gypsy	LTR	70	tiny	142	medium	4638311	chromoarm	1807	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	15856939	15856989	AT5TE57240	.	-	BRODYAGA1A	MuDR	DNA	50	tiny	586	high	4638537	chromoarm	1601	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	15856989	15857606	AT5TE57245	.	-	ATREP3	Helitron	RC	617	short	1439	high	4638587	chromoarm	984	no-CHH	no-CHH	.	.	.	.	.
Chr5	15857606	15857672	AT5TE57250	.	+	BRODYAGA2	MuDR	DNA	66	tiny	525	high	4639204	chromoarm	918	no-CHH	no-CHH	.	.	.	.	.
Chr5	15865101	15865165	AT5TE57280	.	+	RathE3_cons	.	RathE3_cons	64	tiny	104	medium	4646699	chromoarm	0	DCL3-RdDM	no-RdDM	.	.	.	.	.
Chr5	15867268	15867444	AT5TE57285	.	+	ATHILA4A	Gypsy	LTR	176	short	310	high	4648866	chromoarm	817	no-CHH	no-CHH	.	.	.	.	.
Chr5	15874637	15874716	AT5TE57310	.	+	RathE2_cons	.	RathE2_cons	79	tiny	74	medium	4656235	chromoarm	548	no-CHH	no-CHH	.	.	.	.	.
Chr5	15876630	15876820	AT5TE57315	.	-	ATCOPIA26	Copia	LTR	190	short	19	low	4658228	chromoarm	631	no-CHH	no-CHH	.	.	.	.	.
Chr5	15877624	15877750	AT5TE57320	.	+	ATREP11	Helitron	RC	126	short	841	high	4659222	chromoarm	1169	no-CHH	no-CHH	.	.	.	.	.
Chr5	15877750	15878018	AT5TE57325	.	+	DT1	Mariner	DNA	268	short	123	medium	4659348	chromoarm	901	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	15878018	15878465	AT5TE57330	.	-	ARNOLDY2	MuDR	DNA	447	short	288	high	4659616	chromoarm	454	no-CHH	no-CHH	.	.	.	.	.
Chr5	15881031	15881443	AT5TE57335	.	-	ATCOPIA4	Copia	LTR	412	short	11	low	4662629	chromoarm	319	no-CHH	no-RdDM	.	.	.	.	.
Chr5	15881732	15881829	AT5TE57340	.	+	ATREP4	Helitron	RC	97	tiny	832	high	4663330	chromoarm	1020	no-CHH	RDR6-RdDM	.	.	.	.	.
Chr5	15881829	15882941	AT5TE57345	.	+	HELITRONY1A	Helitron	RC	1112	short	271	high	4663427	chromoarm	328	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15882294	15882765	AT5TE57350	.	+	ATREP2	Helitron	RC	471	short	164	medium	4663892	chromoarm	504	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15882954	15883052	AT5TE57355	.	-	ATREP4	Helitron	RC	98	tiny	832	high	4664552	chromoarm	217	no-CHH	no-CHH	.	.	.	.	.
Chr5	15886385	15886526	AT5TE57365	.	-	HELITRONY3	Helitron	RC	141	short	1399	high	4667983	chromoarm	17	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	15886528	15887192	AT5TE57370	.	-	ATREP6	Helitron	RC	664	short	181	medium	4668126	chromoarm	160	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	15887192	15887351	AT5TE57375	.	+	ATREP15	Helitron	RC	159	short	1003	high	4668790	chromoarm	819	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15892012	15892141	AT5TE57385	.	-	HELITRONY1D	Helitron	RC	129	short	756	high	4673610	chromoarm	1619	no-CHH	no-CHH	.	.	.	.	.
Chr5	15892141	15893046	AT5TE57390	.	-	ATREP19	.	DNA	905	short	189	medium	4673739	chromoarm	714	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	15894763	15895649	AT5TE57395	.	-	HELITRONY3	Helitron	RC	886	short	1399	high	4676361	chromoarm	79	no-CHH	no-CHH	.	.	.	.	.
Chr5	15895671	15895854	AT5TE57400	.	+	ATENSPM5	En-Spm	DNA	183	short	111	medium	4677269	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	15910004	15910686	AT5TE57450	.	+	ATHILA7	Gypsy	LTR	682	short	134	medium	4691602	chromoarm	856	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	15910174	15910543	AT5TE57455	.	+	ATMUNX1	MuDR	DNA	369	short	155	medium	4691772	chromoarm	999	PolIV-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	15913072	15913745	AT5TE57460	.	+	TAG3N1	HAT	DNA	673	short	97	medium	4694670	chromoarm	525	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15913745	15913842	AT5TE57465	.	+	TAG1	HAT	DNA	97	tiny	28	low	4695343	chromoarm	1198	no-CHH	no-CHH	.	.	.	.	.
Chr5	15914286	15915188	AT5TE57470	.	+	HELITRONY1E	Helitron	RC	902	short	447	high	4695884	chromoarm	1739	no-CHH	no-CHH	.	.	.	.	.
Chr5	15917103	15917929	AT5TE57475	.	-	ATREP19	.	DNA	826	short	189	medium	4698701	chromoarm	1311	no-CHH	no-CHH	.	.	.	.	.
Chr5	15917929	15918650	AT5TE57480	.	+	ATHPOGON3	Pogo	DNA	721	short	118	medium	4699527	chromoarm	590	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	15918650	15918731	AT5TE57485	.	+	ATREP19	.	DNA	81	tiny	189	medium	4700248	chromoarm	509	no-CHH	no-CHH	.	.	.	.	.
Chr5	15923746	15924452	AT5TE57495	.	+	ATLANTYS1	Gypsy	LTR	706	short	153	medium	4705344	chromoarm	0	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	15924026	15924573	+	transcript_id-"754906ce-3fcd-4c3e-a206-aa9e71810ecb|10"
Chr5	15924480	15925238	AT5TE57500	.	+	ATLANTYS3	Gypsy	LTR	758	short	142	medium	4706078	chromoarm	0	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	15942240	15942657	AT5TE57560	.	+	BOMZH2	MuDR	DNA	417	short	47	low	4723838	chromoarm	225	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	15945762	15945787	AT5TE57570	.	+	BRODYAGA1A	MuDR	DNA	25	tiny	586	high	4727360	chromoarm	86	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	15945788	15946554	AT5TE57575	.	-	ATREP1	Helitron	RC	767	short	498	high	4727385	chromoarm	111	.	.	LowExpressed	.	.	.	.
Chr5	15949446	15949640	AT5TE57585	.	-	ATMU10	MuDR	DNA	195	short	87	medium	4731043	chromoarm	259	.	.	.	.	.	.	.
Chr5	15951412	15951546	AT5TE57590	.	+	ATREP4	Helitron	RC	134	short	832	high	4733010	chromoarm	241	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	15951546	15952389	AT5TE57595	.	-	BRODYAGA2	MuDR	DNA	843	short	525	high	4733144	chromoarm	375	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	15952389	15952441	AT5TE57600	.	+	ATREP4	Helitron	RC	52	tiny	832	high	4733987	chromoarm	1218	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	15952798	15953073	AT5TE57605	.	-	ATTIRX1B	.	DNA	275	short	44	low	4734396	chromoarm	1627	no-CHH	no-CHH	.	.	.	.	.
Chr5	15955477	15955827	AT5TE57610	.	-	ATREP15	Helitron	RC	350	short	1003	high	4737075	chromoarm	1861	no-CHH	no-CHH	.	.	.	.	.
Chr5	15955827	15955847	AT5TE57615	.	+	BRODYAGA2	MuDR	DNA	20	tiny	525	high	4737425	chromoarm	1841	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr5	15955847	15956401	AT5TE57620	.	+	VANDAL17	MuDR	DNA	554	short	178	medium	4737445	chromoarm	1287	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	15956720	15957077	AT5TE57625	.	-	ATMUNX1	MuDR	DNA	357	short	155	medium	4738318	chromoarm	611	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	15959721	15959962	AT5TE57630	.	+	ATCOPIA10	Copia	LTR	241	short	7	low	4741319	chromoarm	1418	no-CHH	no-CHH	.	.	.	.	.
Chr5	15961378	15964805	AT5TE57635	.	+	ATLINEIII	L1	LINE	3427	medium	196	medium	4742976	chromoarm	754	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	15967750	15968424	AT5TE57645	.	+	ATREP10B	Helitron	RC	674	short	491	high	4749348	chromoarm	197	no-CHH	no-CHH	.	.	.	.	.
Chr5	15967852	15968366	AT5TE57650	.	-	BRODYAGA2	MuDR	DNA	514	short	525	high	4749450	chromoarm	255	no-CHH	no-CHH	.	.	.	.	.
Chr5	15968614	15968714	AT5TE57655	.	+	ATHILA8B	Gypsy	LTR	100	short	78	medium	4750212	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	15970304	15970381	AT5TE57660	.	-	ATHATN3	HAT	DNA	77	tiny	70	medium	4751902	chromoarm	293	no-CHH	no-CHH	.	.	.	.	.
Chr5	15972492	15973914	AT5TE57665	.	+	ATDNAI26T9	MuDR	DNA	1422	short	25	low	4754090	chromoarm	436	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	15983813	15983839	AT5TE57700	.	+	HELITRONY1D	Helitron	RC	26	tiny	756	high	4765411	chromoarm	730	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr5	15983839	15984716	AT5TE57705	.	-	ATREP1	Helitron	RC	877	short	498	high	4765437	chromoarm	532	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	15992506	15992526	AT5TE57730	.	-	ATHAT1	HAT	DNA	20	tiny	105	medium	4774104	chromoarm	625	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	15992526	15992876	AT5TE57735	.	-	ATHAT1	HAT	DNA	350	short	105	medium	4774124	chromoarm	645	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	16003225	16003438	AT5TE57770	.	-	ATREP17	MuDR	DNA	213	short	34	low	4784823	chromoarm	153	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	16003785	16003933	AT5TE57775	.	+	ATREP17	MuDR	DNA	148	short	34	low	4785383	chromoarm	560	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	16007287	16008399	AT5TE57785	.	-	ATREP10D	Helitron	RC	1112	short	1295	high	4788885	chromoarm	859	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	16009985	16010209	AT5TE57790	.	+	TSCL	.	LINE?	224	short	81	medium	4791583	chromoarm	862	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	16013228	16013579	AT5TE57800	.	+	HELITRONY3	Helitron	RC	351	short	1399	high	4794826	chromoarm	744	no-CHH	no-CHH	.	.	.	.	.
Chr5	16013579	16015435	AT5TE57805	.	+	ARNOLDY2	MuDR	DNA	1856	short	288	high	4795177	chromoarm	1095	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	16015435	16015558	AT5TE57810	.	-	HELITRONY3	Helitron	RC	123	short	1399	high	4797033	chromoarm	2951	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	16015558	16015617	AT5TE57815	.	-	ARNOLDY2	MuDR	DNA	59	tiny	288	high	4797156	chromoarm	3074	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	16016188	16016424	AT5TE57820	.	-	HELITRONY1E	Helitron	RC	236	short	447	high	4797786	chromoarm	3704	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	16016425	16016494	AT5TE57825	.	-	ATREP3	Helitron	RC	70	tiny	1439	high	4798022	chromoarm	3723	.	.	.	.	.	.	.
Chr5	16016494	16017749	AT5TE57830	.	-	ATREP6	Helitron	RC	1255	short	181	medium	4798092	chromoarm	2468	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	16017750	16017798	AT5TE57835	.	-	ATREP9	Helitron	RC	49	tiny	201	high	4799347	chromoarm	2419	.	.	.	.	.	.	.
Chr5	16018026	16018664	AT5TE57840	.	+	HELITRONY1B	Helitron	RC	638	short	414	high	4799624	chromoarm	1553	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	16019284	16020273	AT5TE57845	.	+	ATREP4	Helitron	RC	989	short	832	high	4800882	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	16030426	16030473	AT5TE57880	.	-	HELITRONY1E	Helitron	RC	47	tiny	447	high	4812024	chromoarm	169	no-CHH	no-CHH	.	.	.	.	.
Chr5	16030473	16030513	AT5TE57885	.	-	ATREP3	Helitron	RC	40	tiny	1439	high	4812071	chromoarm	216	no-CHH	no-CHH	.	.	.	.	.
Chr5	16030513	16031385	AT5TE57890	.	-	ATREP1	Helitron	RC	872	short	498	high	4812111	chromoarm	256	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	16031386	16031432	AT5TE57895	.	-	HELITRONY1D	Helitron	RC	46	tiny	756	high	4812984	chromoarm	650	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	16048488	16048829	AT5TE57950	.	-	ATREP16	MuDR	DNA	341	short	47	low	4830086	chromoarm	1133	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	16049011	16049087	AT5TE57955	.	-	ATLINE1A	L1	LINE	76	tiny	289	high	4830609	chromoarm	1656	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	16049142	16051639	AT5TE57960	.	+	VANDAL2N1	MuDR	DNA	2497	medium	51	medium	4830740	chromoarm	239	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	16055309	16055822	AT5TE57970	.	+	ATREP3	Helitron	RC	513	short	1439	high	4836907	chromoarm	1524	no-CHH	no-CHH	.	.	.	.	.
Chr5	16055822	16056884	AT5TE57975	.	-	ATREP10D	Helitron	RC	1062	short	1295	high	4837420	chromoarm	462	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	16056884	16056927	AT5TE57980	.	+	DT1	Mariner	DNA	43	tiny	123	medium	4838482	chromoarm	419	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr5	16056927	16057196	AT5TE57985	.	-	ATREP4	Helitron	RC	269	short	832	high	4838525	chromoarm	150	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	16060979	16061012	AT5TE57995	.	-	HELITRONY1D	Helitron	RC	33	tiny	756	high	4842577	chromoarm	243	PolIV-and-RDR6-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	16061025	16061786	AT5TE58000	.	+	BRODYAGA2	MuDR	DNA	761	short	525	high	4842623	chromoarm	169	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	16061786	16061895	AT5TE58005	.	+	HELITRON2	Helitron	RC	109	short	194	medium	4843384	chromoarm	60	no-CHH	no-CHH	.	.	.	.	.
Chr5	16064330	16064358	AT5TE58010	.	-	ATREP3	Helitron	RC	28	tiny	1439	high	4845928	chromoarm	29	no-CHH	no-CHH	.	.	.	.	.
Chr5	16064358	16064380	AT5TE58015	.	+	ATREP10A	Helitron	RC	22	tiny	279	high	4845956	chromoarm	57	no-CHH	no-CHH	.	.	.	.	.
Chr5	16064380	16064944	AT5TE58020	.	-	BRODYAGA2	MuDR	DNA	564	short	525	high	4845978	chromoarm	79	no-CHH	no-CHH	.	.	.	.	.
Chr5	16064944	16065204	AT5TE58025	.	-	HELITRONY2	Helitron	RC	260	short	198	medium	4846542	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	16074703	16074788	AT5TE58060	.	-	DT1	Mariner	DNA	85	tiny	123	medium	4856301	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	16092297	16092860	AT5TE58130	.	+	ATCOPIA22	Copia	LTR	563	short	14	low	4873895	chromoarm	533	no-CHH	no-CHH	.	.	.	.	.
Chr5	16108824	16110017	AT5TE58190	.	+	BRODYAGA1	MuDR	DNA	1194	short	251	high	4890421	chromoarm	322	.	.	LowExpressed	.	.	.	.
Chr5	16110017	16110055	AT5TE58195	.	-	BRODYAGA1	MuDR	DNA	38	tiny	251	high	4891615	chromoarm	722	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	16110453	16110549	AT5TE58200	.	+	ATMU7	MuDR	DNA	96	tiny	32	low	4892051	chromoarm	228	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	16118108	16118816	AT5TE58230	.	+	ATREP4	Helitron	RC	708	short	832	high	4899706	chromoarm	2292	no-CHH	no-CHH	.	.	.	.	.
Chr5	16118521	16118779	AT5TE58235	.	-	ATTIRTA1	Tc1	DNA	258	short	95	medium	4900119	chromoarm	2705	no-CHH	no-RdDM	.	.	.	.	.
Chr5	16119348	16119376	AT5TE58240	.	-	VANDAL1	MuDR	DNA	28	tiny	80	medium	4900946	chromoarm	2380	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	16119376	16119616	AT5TE58245	.	+	ATMU5	MuDR	DNA	240	short	24	low	4900974	chromoarm	2140	no-CHH	no-CHH	.	.	.	.	.
Chr5	16120113	16121446	AT5TE58250	.	-	HELITRONY3	Helitron	RC	1333	short	1399	high	4901711	chromoarm	310	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	16124238	16124376	AT5TE58260	.	-	ATLINE1A	L1	LINE	138	short	289	high	4905836	chromoarm	697	no-CHH	no-CHH	.	.	.	.	.
Chr5	16124880	16126347	AT5TE58265	.	+	ATREP10D	Helitron	RC	1467	short	1295	high	4906478	chromoarm	1339	no-CHH	no-CHH	.	.	.	.	.
Chr5	16126347	16126469	AT5TE58270	.	+	ATREP10D	Helitron	RC	122	short	1295	high	4907945	chromoarm	1379	no-CHH	no-CHH	.	.	.	.	.
Chr5	16126469	16126687	AT5TE58275	.	+	ATREP10D	Helitron	RC	218	short	1295	high	4908067	chromoarm	1161	no-CHH	no-CHH	.	.	.	.	.
Chr5	16127705	16127760	AT5TE58280	.	+	VANDAL17	MuDR	DNA	55	tiny	178	medium	4909303	chromoarm	88	no-CHH	no-CHH	.	.	.	.	.
Chr5	16128244	16128597	AT5TE58285	.	-	BRODYAGA1A	MuDR	DNA	353	short	586	high	4909842	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	16128597	16128622	AT5TE58290	.	-	ATREP6	Helitron	RC	25	tiny	181	medium	4910195	chromoarm	0	no-CHH	no-RdDM	.	.	.	.	.
Chr5	16130735	16131090	AT5TE58295	.	-	TSCL	.	LINE?	355	short	81	medium	4912333	chromoarm	563	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	16132100	16132138	AT5TE58300	.	+	ATENSPM1	En-Spm	DNA	38	tiny	30	low	4913698	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	16132138	16132656	AT5TE58305	.	+	VANDAL17	MuDR	DNA	518	short	178	medium	4913736	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	16134258	16134438	AT5TE58310	.	-	ATMU10	MuDR	DNA	180	short	87	medium	4915856	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	16134438	16134471	AT5TE58315	.	+	VANDAL8	MuDR	DNA	33	tiny	123	medium	4916036	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	16143754	16144497	AT5TE58340	.	-	ATREP10B	Helitron	RC	743	short	491	high	4925352	chromoarm	722	no-CHH	no-CHH	.	.	.	.	.
Chr5	16144497	16145120	AT5TE58345	.	-	HELITRONY3	Helitron	RC	623	short	1399	high	4926095	chromoarm	99	no-CHH	no-CHH	.	.	.	.	.
Chr5	16145120	16145145	AT5TE58350	.	-	ATREP11	Helitron	RC	25	tiny	841	high	4926718	chromoarm	74	no-CHH	no-CHH	.	.	.	.	.
Chr5	16149367	16149517	AT5TE58360	.	-	ARNOLDY1	MuDR	DNA	150	short	237	high	4930965	chromoarm	467	no-CHH	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	16156683	16157185	AT5TE58390	.	+	ATLINE2	L1	LINE	502	short	138	medium	4938281	chromoarm	1000	no-CHH	no-CHH	.	.	.	.	.
Chr5	16157931	16158227	AT5TE58395	.	+	HELITRON1	Helitron	RC	296	short	130	medium	4939529	chromoarm	2248	no-CHH	no-CHH	.	.	.	.	.
Chr5	16158256	16158289	AT5TE58400	.	-	ATMUN1	MuDR	DNA	33	tiny	107	medium	4939854	chromoarm	2573	no-CHH	no-CHH	.	.	.	.	.
Chr5	16158289	16158788	AT5TE58405	.	-	ATREP11	Helitron	RC	499	short	841	high	4939887	chromoarm	2606	no-CHH	no-CHH	.	.	.	.	.
Chr5	16159403	16160186	AT5TE58410	.	+	ATHPOGON3	Pogo	DNA	783	short	118	medium	4941001	chromoarm	1533	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	16160186	16160284	AT5TE58415	.	+	ATHPOGON2	Pogo	DNA	98	tiny	27	low	4941784	chromoarm	1435	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	16160284	16161266	AT5TE58420	.	+	ATREP5	Helitron	RC	982	short	624	high	4941882	chromoarm	453	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	16175436	16175801	AT5TE58470	.	+	ATDNA12T3_2	.	DNA	365	short	660	high	4957034	chromoarm	625	no-CHH	no-CHH	.	.	.	.	.
Chr5	16178387	16179572	AT5TE58475	.	+	ATREP10D	Helitron	RC	1185	short	1295	high	4959985	chromoarm	656	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	16196006	16196036	AT5TE58530	.	-	ATREP15	Helitron	RC	30	tiny	1003	high	4977604	chromoarm	493	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	16196036	16196973	AT5TE58535	.	+	ATREP4	Helitron	RC	937	short	832	high	4977634	chromoarm	523	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	16199644	16199915	AT5TE58540	.	-	DT1	Mariner	DNA	271	short	123	medium	4981242	chromoarm	2549	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	16210831	16210973	AT5TE58580	.	+	HELITRON3	Helitron	RC	142	short	53	medium	4992429	chromoarm	1086	no-CHH	no-CHH	.	.	.	.	.
Chr5	16210985	16211007	AT5TE58585	.	+	ATREP11	Helitron	RC	22	tiny	841	high	4992583	chromoarm	1240	no-CHH	no-CHH	.	.	.	.	.
Chr5	16211007	16212045	AT5TE58590	.	+	ATREP11	Helitron	RC	1038	short	841	high	4992605	chromoarm	1262	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	16212045	16212129	AT5TE58595	.	+	ATREP3	Helitron	RC	84	tiny	1439	high	4993643	chromoarm	1231	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	16226835	16227018	AT5TE58640	.	-	VANDAL1	MuDR	DNA	183	short	80	medium	5008433	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	16227062	16227297	AT5TE58645	.	-	VANDAL1	MuDR	DNA	235	short	80	medium	5008660	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	16232567	16232670	AT5TE58655	.	-	ATHAT1	HAT	DNA	103	short	105	medium	5014165	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	16257769	16258101	AT5TE58740	.	-	ATLINE1A	L1	LINE	332	short	289	high	5039367	chromoarm	1004	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	16258341	16258960	AT5TE58745	.	-	ATREP5	Helitron	RC	619	short	624	high	5039939	chromoarm	1576	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	16261350	16261906	AT5TE58750	.	+	ATLINEIII	L1	LINE	556	short	196	medium	5042948	chromoarm	3164	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	16262299	16263557	AT5TE58755	.	+	ATLINE2	L1	LINE	1258	short	138	medium	5043897	chromoarm	1513	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	16269842	16271093	AT5TE58770	.	+	ATREP9	Helitron	RC	1251	short	201	high	5051440	chromoarm	187	no-CHH	no-CHH	.	.	.	.	.
Chr5	16275299	16276735	AT5TE58780	.	+	ATREP10D	Helitron	RC	1436	short	1295	high	5056897	chromoarm	609	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	16306415	16307019	AT5TE58890	.	-	ATREP15	Helitron	RC	604	short	1003	high	5088013	chromoarm	44	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	16321968	16329840	AT5TE58950	.	-	HELITRONY1B	Helitron	RC	7872	long	414	high	5103566	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	16322759	16322970	AT5TE58955	.	-	ATCOPIA28	Copia	LTR	211	short	81	medium	5104357	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	16336541	16336680	AT5TE59000	.	-	BRODYAGA1	MuDR	DNA	139	short	251	high	5118139	chromoarm	913	no-CHH	no-CHH	.	.	.	.	.
Chr5	16336680	16337223	AT5TE59005	.	-	HELITRONY3A	Helitron	RC	543	short	49	low	5118278	chromoarm	1052	no-CHH	no-CHH	.	.	.	.	.
Chr5	16356246	16356315	AT5TE59070	.	+	ATREP5	Helitron	RC	69	tiny	624	high	5137844	chromoarm	391	no-CHH	no-CHH	.	.	.	.	.
Chr5	16356371	16359539	AT5TE59075	.	+	ATREP3	Helitron	RC	3168	medium	1439	high	5137969	chromoarm	71	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	16359539	16359601	AT5TE59080	.	-	ATREP4	Helitron	RC	62	tiny	832	high	5141137	chromoarm	9	no-CHH	no-CHH	.	.	.	.	.
Chr5	16363909	16364468	AT5TE59090	.	-	ATREP10D	Helitron	RC	559	short	1295	high	5145507	chromoarm	187	no-CHH	no-CHH	.	.	.	.	.
Chr5	16371936	16371986	AT5TE59120	.	-	ATREP11	Helitron	RC	50	tiny	841	high	5153534	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	16371986	16372312	AT5TE59125	.	-	HELITRONY1A	Helitron	RC	326	short	271	high	5153584	chromoarm	1	no-CHH	no-CHH	.	.	.	.	.
Chr5	16372312	16372732	AT5TE59130	.	-	HELITRONY1E	Helitron	RC	420	short	447	high	5153910	chromoarm	327	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	16372732	16374856	AT5TE59135	.	+	ATREP1	Helitron	RC	2124	medium	498	high	5154330	chromoarm	164	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	16374856	16374885	AT5TE59140	.	-	HELITRONY3	Helitron	RC	29	tiny	1399	high	5156454	chromoarm	135	no-CHH	no-CHH	.	.	.	.	.
Chr5	16374885	16374962	AT5TE59145	.	-	HELITRONY3	Helitron	RC	77	tiny	1399	high	5156483	chromoarm	58	no-CHH	no-CHH	.	.	.	.	.
Chr5	16384182	16384827	AT5TE59170	.	-	ATREP5	Helitron	RC	645	short	624	high	5165780	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	16387697	16388592	AT5TE59180	.	+	ATREP10D	Helitron	RC	895	short	1295	high	5169295	chromoarm	2698	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	16388592	16388624	AT5TE59185	.	+	HELITRONY2	Helitron	RC	32	tiny	198	medium	5170190	chromoarm	3222	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	16389795	16390680	AT5TE59190	.	+	ATREP10D	Helitron	RC	885	short	1295	high	5171393	chromoarm	1166	no-CHH	no-CHH	.	.	.	.	.
Chr5	16390939	16391333	AT5TE59195	.	-	BRODYAGA1A	MuDR	DNA	394	short	586	high	5172537	chromoarm	513	no-CHH	no-CHH	.	.	.	.	.
Chr5	16409964	16410250	AT5TE59260	.	-	ATLINEIII	L1	LINE	286	short	196	medium	5191562	chromoarm	615	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr5	16416440	16416604	AT5TE59280	.	-	ATREP9	Helitron	RC	164	short	201	high	5198038	chromoarm	488	no-CHH	no-CHH	.	.	.	.	.
Chr5	16416604	16418070	AT5TE59285	.	+	ATREP9	Helitron	RC	1466	short	201	high	5198202	chromoarm	652	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr5	16416972	16417225	AT5TE59290	.	+	HELITRONY3	Helitron	RC	253	short	1399	high	5198570	chromoarm	1020	DCL3-RdDM	no-CHH	.	.	.	.	.
Chr5	16417225	16417589	AT5TE59295	.	+	ATTIRX1A	.	DNA	364	short	63	medium	5198823	chromoarm	1273	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	16418070	16418416	AT5TE59300	.	+	ATREP9	Helitron	RC	346	short	201	high	5199668	chromoarm	503	no-CHH	no-CHH	.	.	.	.	.
Chr5	16440739	16441541	AT5TE59380	.	-	ATREP15	Helitron	RC	802	short	1003	high	5222337	chromoarm	316	no-CHH	no-CHH	.	.	.	.	.
Chr5	16444759	16445434	AT5TE59390	.	-	HELITRONY1D	Helitron	RC	675	short	756	high	5226357	chromoarm	329	no-CHH	no-CHH	.	.	.	.	.
Chr5	16464130	16464730	AT5TE59460	.	-	ATREP11A	Helitron	RC	600	short	95	medium	5245728	chromoarm	889	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	16482177	16482301	AT5TE59520	.	+	BRODYAGA2	MuDR	DNA	124	short	525	high	5263775	chromoarm	1734	no-CHH	no-CHH	.	.	.	.	.
Chr5	16482301	16483672	AT5TE59525	.	+	ATREP11	Helitron	RC	1371	short	841	high	5263899	chromoarm	372	no-CHH	no-CHH	.	.	.	.	.
Chr5	16483672	16483768	AT5TE59530	.	+	ATREP11	Helitron	RC	96	tiny	841	high	5265270	chromoarm	276	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	16495153	16495534	AT5TE59570	.	-	ATIS112A	Harbinger	DNA	381	short	173	medium	5276751	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	16498883	16499245	AT5TE59580	.	-	ATIS112A	Harbinger	DNA	362	short	173	medium	5280481	chromoarm	0	no-CHH	no-CHH	ExpressedAndAnnotated	16500884	16498176	-	transcript_id-"c27675b8-0200-45c2-9039-5c5ee7aaf1e8|7"
Chr5	16502919	16503563	AT5TE59590	.	-	ATREP15	Helitron	RC	644	short	1003	high	5284517	chromoarm	17	no-CHH	no-CHH	.	.	.	.	.
Chr5	16503578	16503694	AT5TE59595	.	+	HELITRONY3	Helitron	RC	116	short	1399	high	5285176	chromoarm	302	no-CHH	no-CHH	.	.	.	.	.
Chr5	16510356	16511346	AT5TE59610	.	-	ATREP9	Helitron	RC	990	short	201	high	5291954	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	16511346	16512056	AT5TE59615	.	+	HELITRONY1B	Helitron	RC	710	short	414	high	5292944	chromoarm	269	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	16512065	16512101	AT5TE59620	.	+	BRODYAGA1A	MuDR	DNA	36	tiny	586	high	5293663	chromoarm	224	no-CHH	no-CHH	.	.	.	.	.
Chr5	16524039	16524486	AT5TE59660	.	-	ATDNA2T9C	MuDR	DNA	447	short	242	high	5305637	chromoarm	1647	no-CHH	no-CHH	.	.	.	.	.
Chr5	16525341	16525452	AT5TE59665	.	+	ATREP5	Helitron	RC	111	short	624	high	5306939	chromoarm	2949	no-CHH	DCL3-RdDM	.	.	.	.	.
Chr5	16525452	16525519	AT5TE59670	.	+	ATREP10B	Helitron	RC	67	tiny	491	high	5307050	chromoarm	3060	no-CHH	no-CHH	.	.	.	.	.
Chr5	16525519	16526626	AT5TE59675	.	-	ATREP19	.	DNA	1107	short	189	medium	5307117	chromoarm	2830	no-CHH	no-CHH	.	.	.	.	.
Chr5	16526626	16527011	AT5TE59680	.	+	ATREP10D	Helitron	RC	385	short	1295	high	5308224	chromoarm	2445	no-CHH	no-CHH	.	.	.	.	.
Chr5	16540082	16540151	AT5TE59730	.	-	ATREP3	Helitron	RC	69	tiny	1439	high	5321680	chromoarm	126	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	16540151	16540839	AT5TE59735	.	-	ARNOLDY1	MuDR	DNA	688	short	237	high	5321749	chromoarm	195	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	16540839	16541018	AT5TE59740	.	-	ATREP3	Helitron	RC	179	short	1439	high	5322437	chromoarm	883	no-CHH	no-CHH	.	.	.	.	.
Chr5	16557366	16557519	AT5TE59800	.	+	ATREP15	Helitron	RC	153	short	1003	high	5338964	chromoarm	1574	no-CHH	no-CHH	.	.	.	.	.
Chr5	16557519	16558537	AT5TE59805	.	+	ATREP11	Helitron	RC	1018	short	841	high	5339117	chromoarm	1727	no-CHH	no-CHH	.	.	.	.	.
Chr5	16560313	16560409	AT5TE59810	.	-	HELITRONY3	Helitron	RC	97	tiny	1399	high	5341910	chromoarm	1719	.	.	.	.	.	.	.
Chr5	16560409	16562449	AT5TE59815	.	-	HELITRONY3	Helitron	RC	2040	medium	1399	high	5342007	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	16570226	16570957	AT5TE59840	.	+	BRODYAGA2	MuDR	DNA	731	short	525	high	5351824	chromoarm	112	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	16570367	16570736	AT5TE59845	.	+	ATTIRX1A	.	DNA	369	short	63	medium	5351965	chromoarm	253	no-CHH	no-CHH	.	.	.	.	.
Chr5	16572811	16573255	AT5TE59850	.	-	BRODYAGA1A	MuDR	DNA	444	short	586	high	5354409	chromoarm	622	no-CHH	no-CHH	.	.	.	.	.
Chr5	16578958	16579357	AT5TE59870	.	-	BRODYAGA2	MuDR	DNA	399	short	525	high	5360556	chromoarm	1066	no-CHH	no-CHH	.	.	.	.	.
Chr5	16579357	16579442	AT5TE59875	.	+	HELITRONY1D	Helitron	RC	85	tiny	756	high	5360955	chromoarm	981	no-CHH	no-CHH	.	.	.	.	.
Chr5	16587701	16587821	AT5TE59900	.	+	BRODYAGA1A	MuDR	DNA	120	short	586	high	5369299	chromoarm	92	no-RdDM	no-CHH	.	.	.	.	.
Chr5	16587822	16588504	AT5TE59905	.	+	ATHPOGON2	Pogo	DNA	682	short	27	low	5369420	chromoarm	95	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	16599527	16600012	AT5TE59940	.	-	ATMUN1	MuDR	DNA	485	short	107	medium	5381125	chromoarm	432	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	16605376	16605493	AT5TE59950	.	-	ATLINE1_3A	L1	LINE	117	short	160	medium	5386974	chromoarm	163	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	16605493	16606000	AT5TE59955	.	-	ATLINE2	L1	LINE	507	short	138	medium	5387091	chromoarm	280	no-CHH	no-CHH	.	.	.	.	.
Chr5	16622848	16623047	AT5TE60010	.	-	ATDNA12T3_2	.	DNA	199	short	660	high	5404446	chromoarm	229	no-CHH	no-CHH	.	.	.	.	.
Chr5	16633939	16635256	AT5TE60050	.	+	ATREP10D	Helitron	RC	1317	short	1295	high	5415537	chromoarm	43	no-CHH	no-CHH	.	.	.	.	.
Chr5	16641989	16642980	AT5TE60080	.	+	ATREP10D	Helitron	RC	991	short	1295	high	5423587	chromoarm	843	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	16642981	16643021	AT5TE60085	.	-	ATREP4	Helitron	RC	41	tiny	832	high	5424578	chromoarm	1054	.	.	.	.	.	.	.
Chr5	16643021	16643443	AT5TE60090	.	+	HELITRONY3	Helitron	RC	422	short	1399	high	5424619	chromoarm	632	no-CHH	no-CHH	.	.	.	.	.
Chr5	16649145	16649315	AT5TE60110	.	-	ATHATN6	HAT	DNA	170	short	43	low	5430743	chromoarm	369	no-CHH	no-CHH	.	.	.	.	.
Chr5	16652447	16652794	AT5TE60120	.	-	ATHILA7	Gypsy	LTR	347	short	134	medium	5434045	chromoarm	542	no-CHH	no-CHH	.	.	.	.	.
Chr5	16677826	16679816	AT5TE60210	.	+	Unassigned	.	Unassigned	1990	short	.	low	5459424	chromoarm	603	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	16681365	16681585	AT5TE60215	.	-	ATDNAI27T9C	MuDR	DNA	220	short	108	medium	5462963	chromoarm	1756	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	16681585	16682292	AT5TE60220	.	+	ATDNA2T9A	MuDR	DNA	707	short	48	low	5463183	chromoarm	1049	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	16682649	16682782	AT5TE60225	.	-	HELITRONY3A	Helitron	RC	133	short	49	low	5464247	chromoarm	559	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr5	16683988	16684653	AT5TE60230	.	+	ATREP10B	Helitron	RC	665	short	491	high	5465586	chromoarm	83	no-CHH	no-CHH	.	.	.	.	.
Chr5	16698233	16698950	AT5TE60280	.	+	ATLINEIII	L1	LINE	717	short	196	medium	5479831	chromoarm	706	no-CHH	no-CHH	.	.	.	.	.
Chr5	16699509	16699609	AT5TE60285	.	+	ATLINE1_5	L1	LINE	100	short	91	medium	5481107	chromoarm	1982	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	16700106	16705033	AT5TE60290	.	+	ATLINE1_6	L1	LINE	4927	medium	129	medium	5481704	chromoarm	1944	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr5	16712788	16712852	AT5TE60320	.	-	VANDAL8	MuDR	DNA	65	tiny	123	medium	5494385	chromoarm	1045	.	.	.	.	.	.	.
Chr5	16712852	16713435	AT5TE60325	.	+	ATREP2	Helitron	RC	583	short	164	medium	5494450	chromoarm	1110	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	16713924	16714124	AT5TE60330	.	+	ATLINE1_1	L1	LINE	200	short	61	medium	5495522	chromoarm	2182	no-CHH	no-CHH	.	.	.	.	.
Chr5	16714773	16714811	AT5TE60335	.	+	ATGP8	Gypsy	LTR	38	tiny	92	medium	5496371	chromoarm	1740	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	16714811	16715309	AT5TE60340	.	+	ATGP8	Gypsy	LTR	498	short	92	medium	5496409	chromoarm	1242	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	16721109	16721189	AT5TE60360	.	+	HELITRONY1B	Helitron	RC	80	tiny	414	high	5502707	chromoarm	173	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	16721189	16721226	AT5TE60365	.	+	ATREP11	Helitron	RC	37	tiny	841	high	5502787	chromoarm	253	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	16721226	16722030	AT5TE60370	.	+	ATREP11	Helitron	RC	804	short	841	high	5502824	chromoarm	66	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	16732134	16732300	AT5TE60410	.	-	ATENSPM5	En-Spm	DNA	166	short	111	medium	5513732	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	16745612	16747017	AT5TE60460	.	+	ATREP10D	Helitron	RC	1405	short	1295	high	5527210	chromoarm	278	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	16747017	16747084	AT5TE60465	.	+	HELITRONY1E	Helitron	RC	67	tiny	447	high	5528615	chromoarm	1683	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	16747084	16747740	AT5TE60470	.	+	ATHATN6	HAT	DNA	656	short	43	low	5528682	chromoarm	1750	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	16749518	16749598	AT5TE60475	.	+	TA11	L1	LINE	80	tiny	157	medium	5531116	chromoarm	4184	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	16749598	16752475	AT5TE60480	.	+	TA11	L1	LINE	2877	medium	157	medium	5531196	chromoarm	1960	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	16767146	16767664	AT5TE60530	.	+	ATREP10B	Helitron	RC	518	short	491	high	5548744	chromoarm	466	no-CHH	no-CHH	.	.	.	.	.
Chr5	16768218	16768358	AT5TE60535	.	+	ATLINE1_3A	L1	LINE	140	short	160	medium	5549816	chromoarm	673	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	16797596	16797782	AT5TE60640	.	-	ATENSPM5	En-Spm	DNA	186	short	111	medium	5579194	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	16798001	16798274	AT5TE60645	.	+	HELITRONY2	Helitron	RC	273	short	198	medium	5579599	chromoarm	94	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	16798274	16799096	AT5TE60650	.	-	ATREP4	Helitron	RC	822	short	832	high	5579872	chromoarm	358	no-CHH	no-CHH	.	.	.	.	.
Chr5	16806475	16806793	AT5TE60680	.	+	ARNOLDY2	MuDR	DNA	318	short	288	high	5588073	chromoarm	903	no-CHH	no-CHH	.	.	.	.	.
Chr5	16810810	16811155	AT5TE60690	.	+	ATHATN4	HAT	DNA	345	short	56	medium	5592408	chromoarm	330	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	16826321	16826549	AT5TE60750	.	-	ATLINE1A	L1	LINE	228	short	289	high	5607919	chromoarm	280	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	16844321	16844434	AT5TE60820	.	-	ATDNAI27T9A	MuDR	DNA	113	short	116	medium	5625919	chromoarm	0	no-RdDM	no-CHH	.	.	.	.	.
Chr5	16845297	16845564	AT5TE60825	.	+	HELITRONY1C	Helitron	RC	267	short	120	medium	5626895	chromoarm	479	no-CHH	no-CHH	.	.	.	.	.
Chr5	16845564	16846141	AT5TE60830	.	+	ATREP11	Helitron	RC	577	short	841	high	5627162	chromoarm	105	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	16848880	16849887	AT5TE60840	.	-	ATREP10D	Helitron	RC	1007	short	1295	high	5630478	chromoarm	0	DCL3-RdDM	no-RdDM	.	.	.	.	.
Chr5	16855737	16856861	AT5TE60860	.	-	ATLINE1A	L1	LINE	1124	short	289	high	5637335	chromoarm	221	PolIV-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	16856861	16856968	AT5TE60865	.	+	TNAT1A	.	DNA	107	short	162	medium	5638459	chromoarm	1345	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	16856968	16857690	AT5TE60870	.	+	TNAT1A	.	DNA	722	short	162	medium	5638566	chromoarm	1452	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	16857690	16858291	AT5TE60875	.	+	ATREP15	Helitron	RC	601	short	1003	high	5639288	chromoarm	2174	no-CHH	no-CHH	.	.	.	.	.
Chr5	16859096	16859667	AT5TE60880	.	+	ATREP3	Helitron	RC	571	short	1439	high	5640694	chromoarm	855	no-CHH	no-CHH	.	.	.	.	.
Chr5	16864432	16864545	AT5TE60890	.	-	RathE2_cons	.	RathE2_cons	113	short	74	medium	5646030	chromoarm	1217	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	16865382	16865623	AT5TE60895	.	+	RathE2_cons	.	RathE2_cons	241	short	74	medium	5646980	chromoarm	2167	no-CHH	no-CHH	.	.	.	.	.
Chr5	16870768	16870801	AT5TE60905	.	+	HELITRONY1D	Helitron	RC	33	tiny	756	high	5652366	chromoarm	200	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	16870801	16870829	AT5TE60910	.	-	VANDAL8	MuDR	DNA	28	tiny	123	medium	5652399	chromoarm	233	no-CHH	DCL3-RdDM	LowExpressed	.	.	.	.
Chr5	16870829	16871517	AT5TE60915	.	+	ATREP2	Helitron	RC	688	short	164	medium	5652427	chromoarm	261	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	16871517	16871599	AT5TE60920	.	+	ATREP1	Helitron	RC	82	tiny	498	high	5653115	chromoarm	949	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	16871719	16871999	AT5TE60925	.	+	ATLINE1A	L1	LINE	280	short	289	high	5653317	chromoarm	962	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	16877763	16878100	AT5TE60940	.	+	BRODYAGA1A	MuDR	DNA	337	short	586	high	5659361	chromoarm	308	no-CHH	no-CHH	.	.	.	.	.
Chr5	16878243	16879552	AT5TE60945	.	-	ATREP10D	Helitron	RC	1309	short	1295	high	5659841	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	16879552	16879841	AT5TE60950	.	+	HELITRONY1D	Helitron	RC	289	short	756	high	5661150	chromoarm	607	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	16879841	16880356	AT5TE60955	.	+	ATHILA8A	Gypsy	LTR	515	short	97	medium	5661439	chromoarm	896	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	16884331	16884465	AT5TE60965	.	+	ARNOLDY2	MuDR	DNA	134	short	288	high	5665929	chromoarm	414	no-CHH	no-CHH	.	.	.	.	.
Chr5	16885850	16886830	AT5TE60970	.	-	ATREP3	Helitron	RC	980	short	1439	high	5667448	chromoarm	134	no-CHH	no-CHH	.	.	.	.	.
Chr5	16886832	16886853	AT5TE60975	.	+	BRODYAGA1	MuDR	DNA	21	tiny	251	high	5668430	chromoarm	111	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	16892060	16892817	AT5TE60985	.	+	BRODYAGA2	MuDR	DNA	757	short	525	high	5673658	chromoarm	151	no-CHH	no-CHH	.	.	.	.	.
Chr5	16901299	16901390	AT5TE61010	.	+	ATHAT1	HAT	DNA	91	tiny	105	medium	5682897	chromoarm	1064	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr5	16907150	16907427	AT5TE61030	.	-	ATMU5	MuDR	DNA	277	short	24	low	5688748	chromoarm	0	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	16908095	16910311	AT5TE61035	.	-	VANDAL1N1	MuDR	DNA	2216	medium	52	medium	5689693	chromoarm	88	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	16910314	16911409	AT5TE61040	.	-	HELITRONY1E	Helitron	RC	1095	short	447	high	5691912	chromoarm	290	no-CHH	no-CHH	.	.	.	.	.
Chr5	16915029	16915078	AT5TE61050	.	+	ATREP4	Helitron	RC	49	tiny	832	high	5696627	chromoarm	781	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	16915078	16915140	AT5TE61055	.	+	ATREP3	Helitron	RC	62	tiny	1439	high	5696676	chromoarm	719	no-RdDM	no-CHH	.	.	.	.	.
Chr5	16915140	16915226	AT5TE61060	.	+	HELITRONY1D	Helitron	RC	86	tiny	756	high	5696738	chromoarm	633	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	16915226	16915804	AT5TE61065	.	+	HELITRONY1D	Helitron	RC	578	short	756	high	5696824	chromoarm	55	no-CHH	no-CHH	.	.	.	.	.
Chr5	16921584	16922185	AT5TE61080	.	-	BRODYAGA1	MuDR	DNA	602	short	251	high	5703181	chromoarm	738	.	.	LowExpressed	.	.	.	.
Chr5	16922293	16922476	AT5TE61085	.	+	ATCOPIA13	Copia	LTR	183	short	35	low	5703891	chromoarm	1448	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	16925087	16925468	AT5TE61090	.	-	HELITRONY3	Helitron	RC	381	short	1399	high	5706685	chromoarm	236	no-CHH	no-CHH	.	.	.	.	.
Chr5	16930875	16931050	AT5TE61110	.	-	ATREP10B	Helitron	RC	175	short	491	high	5712473	chromoarm	508	no-CHH	no-CHH	.	.	.	.	.
Chr5	16934291	16935286	AT5TE61120	.	-	ATHILA7A	Gypsy	LTR	995	short	31	low	5715889	chromoarm	494	no-CHH	no-CHH	.	.	.	.	.
Chr5	16935681	16935923	AT5TE61125	.	-	DT1	Mariner	DNA	242	short	123	medium	5717279	chromoarm	381	no-CHH	no-CHH	.	.	.	.	.
Chr5	16944879	16945126	AT5TE61150	.	+	TAG1	HAT	DNA	247	short	28	low	5726477	chromoarm	181	no-CHH	no-CHH	.	.	.	.	.
Chr5	16961200	16961257	AT5TE61210	.	-	HELITRONY1D	Helitron	RC	57	tiny	756	high	5742798	chromoarm	529	no-CHH	no-CHH	.	.	.	.	.
Chr5	16961257	16961286	AT5TE61215	.	+	ATCOPIA30	Copia	LTR	29	tiny	33	low	5742855	chromoarm	586	no-CHH	no-CHH	.	.	.	.	.
Chr5	16961286	16962328	AT5TE61220	.	-	ATREP10B	Helitron	RC	1042	short	491	high	5742884	chromoarm	522	no-CHH	no-RdDM	.	.	.	.	.
Chr5	16966191	16966563	AT5TE61230	.	+	ATCOPIA95	Copia	LTR	372	short	72	medium	5747789	chromoarm	1092	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	16966676	16966896	AT5TE61235	.	-	ATHAT1	HAT	DNA	220	short	105	medium	5748274	chromoarm	1577	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	16967166	16967750	AT5TE61240	.	-	ATREP10D	Helitron	RC	584	short	1295	high	5748764	chromoarm	1068	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	16967750	16968567	AT5TE61245	.	+	BRODYAGA2	MuDR	DNA	817	short	525	high	5749348	chromoarm	251	no-CHH	no-CHH	.	.	.	.	.
Chr5	16968567	16968679	AT5TE61250	.	+	HELITRONY1B	Helitron	RC	112	short	414	high	5750165	chromoarm	139	no-CHH	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	16970631	16971076	AT5TE61255	.	-	ATMU3N1	MuDR	DNA	446	short	19	low	5752228	chromoarm	235	.	.	.	.	.	.	.
Chr5	16979080	16979610	AT5TE61280	.	+	ATREP10C	Helitron	RC	530	short	123	medium	5760678	chromoarm	162	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	16979610	16979655	AT5TE61285	.	+	ATREP15	Helitron	RC	45	tiny	1003	high	5761208	chromoarm	117	no-CHH	no-CHH	.	.	.	.	.
Chr5	16981437	16981975	AT5TE61290	.	-	ATHATN5	HAT	DNA	538	short	42	low	5763035	chromoarm	389	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	16995914	16996260	AT5TE61340	.	-	ATCOPIA28	Copia	LTR	346	short	81	medium	5777512	chromoarm	639	no-CHH	no-CHH	.	.	.	.	.
Chr5	16996653	16996865	AT5TE61345	.	-	ATMUN1	MuDR	DNA	212	short	107	medium	5778251	chromoarm	34	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	16997383	16997612	AT5TE61350	.	+	ATRE1	Copia	LTR	229	short	22	low	5778981	chromoarm	256	no-CHH	no-CHH	.	.	.	.	.
Chr5	16997644	16997822	AT5TE61355	.	+	ATCOPIA92	Copia	LTR	178	short	8	low	5779242	chromoarm	445	no-CHH	no-CHH	.	.	.	.	.
Chr5	17002625	17002869	AT5TE61365	.	-	ATREP10B	Helitron	RC	244	short	491	high	5784223	chromoarm	159	no-CHH	no-CHH	.	.	.	.	.
Chr5	17002869	17003512	AT5TE61370	.	+	ATREP3	Helitron	RC	643	short	1439	high	5784467	chromoarm	403	no-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	17005641	17005820	AT5TE61375	.	-	ATREP1	Helitron	RC	179	short	498	high	5787239	chromoarm	303	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	17005820	17007362	AT5TE61380	.	+	ATREP4	Helitron	RC	1542	short	832	high	5787418	chromoarm	150	no-RdDM	no-CHH	.	.	.	.	.
Chr5	17017563	17017653	AT5TE61420	.	-	HELITRON4	Helitron	RC	90	tiny	199	medium	5799161	chromoarm	405	no-CHH	no-CHH	.	.	.	.	.
Chr5	17017653	17018028	AT5TE61425	.	+	HELITRONY1D	Helitron	RC	375	short	756	high	5799251	chromoarm	30	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	17018357	17018394	AT5TE61430	.	-	ATREP10A	Helitron	RC	37	tiny	279	high	5799955	chromoarm	0	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	17018394	17019991	AT5TE61435	.	+	ATREP10A	Helitron	RC	1597	short	279	high	5799992	chromoarm	0	no-RdDM	no-CHH	.	.	.	.	.
Chr5	17019991	17020605	AT5TE61440	.	+	ATREP10D	Helitron	RC	614	short	1295	high	5801589	chromoarm	853	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	17025497	17026376	AT5TE61450	.	+	ATREP15	Helitron	RC	879	short	1003	high	5807095	chromoarm	268	no-CHH	no-CHH	.	.	.	.	.
Chr5	17026376	17027139	AT5TE61455	.	-	ARNOLDY1	MuDR	DNA	763	short	237	high	5807974	chromoarm	1147	no-CHH	no-CHH	.	.	.	.	.
Chr5	17027139	17027496	AT5TE61460	.	+	ATTIRX1A	.	DNA	357	short	63	medium	5808737	chromoarm	1910	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	17027496	17027911	AT5TE61465	.	+	HELITRONY1D	Helitron	RC	415	short	756	high	5809094	chromoarm	2267	no-CHH	no-CHH	.	.	.	.	.
Chr5	17028653	17028701	AT5TE61470	.	+	ARNOLDY2	MuDR	DNA	48	tiny	288	high	5810251	chromoarm	2515	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	17028701	17028996	AT5TE61475	.	+	ARNOLDY1	MuDR	DNA	295	short	237	high	5810299	chromoarm	2220	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	17029238	17029306	AT5TE61480	.	-	ATREP4	Helitron	RC	69	tiny	832	high	5810835	chromoarm	1910	.	.	.	.	.	.	.
Chr5	17029321	17030674	AT5TE61485	.	-	ARNOLDY2	MuDR	DNA	1353	short	288	high	5810919	chromoarm	542	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	17030674	17031091	AT5TE61490	.	-	ATHILA7	Gypsy	LTR	417	short	134	medium	5812272	chromoarm	125	no-CHH	no-CHH	.	.	.	.	.
Chr5	17035536	17035972	AT5TE61500	.	-	HELITRONY1D	Helitron	RC	436	short	756	high	5817134	chromoarm	700	no-CHH	no-CHH	.	.	.	.	.
Chr5	17036248	17036643	AT5TE61505	.	+	ATGP8	Gypsy	LTR	395	short	92	medium	5817846	chromoarm	29	no-CHH	no-CHH	.	.	.	.	.
Chr5	17037710	17037780	AT5TE61510	.	-	ATREP18	.	DNA	70	tiny	391	high	5819308	chromoarm	930	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	17038358	17039610	AT5TE61515	.	+	ATREP10D	Helitron	RC	1252	short	1295	high	5819956	chromoarm	1578	no-CHH	no-CHH	.	.	.	.	.
Chr5	17039610	17039773	AT5TE61520	.	-	ATREP10D	Helitron	RC	163	short	1295	high	5821208	chromoarm	2830	no-CHH	no-CHH	.	.	.	.	.
Chr5	17040987	17041358	AT5TE61525	.	+	ARNOLDY1	MuDR	DNA	371	short	237	high	5822585	chromoarm	4207	no-CHH	no-CHH	.	.	.	.	.
Chr5	17041087	17041283	AT5TE61530	.	-	ARNOLDY2	MuDR	DNA	196	short	288	high	5822685	chromoarm	4307	no-RdDM	no-CHH	.	.	.	.	.
Chr5	17041751	17042841	AT5TE61535	.	+	ATREP8	Helitron	RC	1090	short	75	medium	5823349	chromoarm	4971	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	17042841	17043352	AT5TE61540	.	+	ATREP11	Helitron	RC	511	short	841	high	5824439	chromoarm	6061	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	17043352	17043958	AT5TE61545	.	+	ATREP2	Helitron	RC	606	short	164	medium	5824950	chromoarm	6572	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	17043958	17044776	AT5TE61550	.	-	ATREP11	Helitron	RC	818	short	841	high	5825556	chromoarm	7178	no-CHH	no-CHH	.	.	.	.	.
Chr5	17047229	17047598	AT5TE61555	.	+	ATLINE1A	L1	LINE	369	short	289	high	5828827	chromoarm	5967	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	17051296	17051685	AT5TE61565	.	+	ATREP15	Helitron	RC	390	short	1003	high	5832893	chromoarm	1880	.	.	.	.	.	.	.
Chr5	17051890	17051955	AT5TE61570	.	+	HELITRONY1D	Helitron	RC	65	tiny	756	high	5833488	chromoarm	1610	no-CHH	no-CHH	.	.	.	.	.
Chr5	17051958	17052796	AT5TE61575	.	+	ATREP4	Helitron	RC	838	short	832	high	5833556	chromoarm	769	no-CHH	no-CHH	.	.	.	.	.
Chr5	17052796	17052874	AT5TE61580	.	+	HELITRONY2	Helitron	RC	78	tiny	198	medium	5834394	chromoarm	691	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	17054398	17054565	AT5TE61585	.	+	RathE1_cons	.	RathE1_cons	167	short	213	high	5835996	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	17055997	17056369	AT5TE61590	.	-	ATREP3	Helitron	RC	372	short	1439	high	5837595	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	17058930	17059019	AT5TE61595	.	+	ATDNA12T3_2	.	DNA	89	tiny	660	high	5840528	chromoarm	955	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	17059192	17060601	AT5TE61600	.	-	ATREP10B	Helitron	RC	1409	short	491	high	5840790	chromoarm	1217	no-CHH	no-CHH	.	.	.	.	.
Chr5	17061154	17061335	AT5TE61605	.	-	ATHILA5	Gypsy	LTR	181	short	131	medium	5842752	chromoarm	1171	no-CHH	no-CHH	.	.	.	.	.
Chr5	17064335	17064368	AT5TE61615	.	-	ARNOLDY1	MuDR	DNA	33	tiny	237	high	5845933	chromoarm	401	no-CHH	no-CHH	.	.	.	.	.
Chr5	17064368	17065143	AT5TE61620	.	+	ATREP15	Helitron	RC	775	short	1003	high	5845966	chromoarm	434	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	17064469	17064823	AT5TE61625	.	+	ATMUNX1	MuDR	DNA	354	short	155	medium	5846067	chromoarm	535	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	17065344	17066070	AT5TE61630	.	+	ATREP10A	Helitron	RC	726	short	279	high	5846942	chromoarm	559	no-CHH	no-CHH	.	.	.	.	.
Chr5	17066070	17066256	AT5TE61635	.	+	ATREP15	Helitron	RC	186	short	1003	high	5847668	chromoarm	373	no-CHH	no-CHH	.	.	.	.	.
Chr5	17072107	17072353	AT5TE61650	.	+	ATHATN9	HAT	DNA	246	short	12	low	5853705	chromoarm	341	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	17072391	17072841	AT5TE61655	.	-	BRODYAGA1A	MuDR	DNA	450	short	586	high	5853989	chromoarm	625	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	17072856	17072992	AT5TE61660	.	+	ATREP10C	Helitron	RC	136	short	123	medium	5854454	chromoarm	1004	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	17079814	17080573	AT5TE61690	.	-	ATREP10B	Helitron	RC	759	short	491	high	5861412	chromoarm	3089	no-CHH	no-CHH	.	.	.	.	.
Chr5	17083709	17084108	AT5TE61700	.	+	ATDNA2T9C	MuDR	DNA	399	short	242	high	5865307	chromoarm	4586	no-CHH	no-CHH	.	.	.	.	.
Chr5	17085554	17086919	AT5TE61705	.	-	ATDNAI27T9A	MuDR	DNA	1365	short	116	medium	5867152	chromoarm	1775	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	17086927	17087368	AT5TE61710	.	-	ATREP4	Helitron	RC	441	short	832	high	5868525	chromoarm	1326	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	17087368	17088634	AT5TE61715	.	+	ATREP15	Helitron	RC	1266	short	1003	high	5868966	chromoarm	60	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	17088653	17088730	AT5TE61720	.	+	ATREP10D	Helitron	RC	77	tiny	1295	high	5870251	chromoarm	0	no-RdDM	no-CHH	.	.	.	.	.
Chr5	17089614	17090005	AT5TE61725	.	+	VANDALNX2	MuDR	DNA	391	short	37	low	5871212	chromoarm	17	no-RdDM	no-CHH	.	.	.	.	.
Chr5	17090764	17090875	AT5TE61730	.	-	ATCOPIA61	Copia	LTR	111	short	12	low	5872362	chromoarm	1167	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	17090875	17095159	AT5TE61735	.	-	ATCOPIA15	Copia	LTR	4284	medium	14	low	5872473	chromoarm	1278	no-RdDM	no-RdDM	ExpressedAndAnnotated	17091083,17095536	17090795,17093513	-,-	transcript_id-"8c03cb36-c949-4093-ae99-4e20924b4bcc|4",transcript_id-"a5520a88-7075-44c0-b5a9-67f8aed354d7|6"
Chr5	17095159	17095666	AT5TE61740	.	-	ATCOPIA62	Copia	LTR	507	short	16	low	5876757	chromoarm	2136	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	17095536	17093513	-	transcript_id-"a5520a88-7075-44c0-b5a9-67f8aed354d7|6"
Chr5	17105900	17105948	AT5TE61780	.	-	HELITRONY3	Helitron	RC	48	tiny	1399	high	5887498	chromoarm	115	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	17105948	17107138	AT5TE61785	.	+	ATREP10D	Helitron	RC	1190	short	1295	high	5887546	chromoarm	163	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	17107138	17107365	AT5TE61790	.	+	ATREP10C	Helitron	RC	227	short	123	medium	5888736	chromoarm	896	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	17107378	17107708	AT5TE61795	.	+	ATLINE1_6	L1	LINE	330	short	129	medium	5888976	chromoarm	553	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	17119923	17120239	AT5TE61840	.	-	HELITRONY1D	Helitron	RC	316	short	756	high	5901521	chromoarm	431	no-CHH	no-CHH	.	.	.	.	.
Chr5	17134516	17134667	AT5TE61890	.	+	ATIS112A	Harbinger	DNA	151	short	173	medium	5916114	chromoarm	1412	no-CHH	no-CHH	.	.	.	.	.
Chr5	17134849	17135339	AT5TE61895	.	+	ATCOPIA79	Copia	LTR	490	short	7	low	5916447	chromoarm	740	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	17141892	17142154	AT5TE61910	.	-	TSCL	.	LINE?	262	short	81	medium	5923490	chromoarm	873	no-CHH	no-CHH	.	.	.	.	.
Chr5	17145542	17145683	AT5TE61920	.	-	ATCOPIA17	Copia	LTR	141	short	16	low	5927140	chromoarm	1501	no-CHH	no-CHH	.	.	.	.	.
Chr5	17145769	17146071	AT5TE61925	.	+	ATHILA7	Gypsy	LTR	302	short	134	medium	5927367	chromoarm	1728	no-CHH	no-CHH	.	.	.	.	.
Chr5	17146925	17147563	AT5TE61930	.	+	ATGP1	Gypsy	LTR	638	short	144	medium	5928523	chromoarm	1401	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	17147565	17147881	AT5TE61935	.	-	ATGP1	Gypsy	LTR	316	short	144	medium	5929163	chromoarm	1083	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	17151711	17151962	AT5TE61945	.	-	BRODYAGA1A	MuDR	DNA	251	short	586	high	5933309	chromoarm	70	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	17161221	17161305	AT5TE61970	.	+	ATREP4	Helitron	RC	84	tiny	832	high	5942819	chromoarm	246	no-CHH	no-CHH	.	.	.	.	.
Chr5	17161305	17162197	AT5TE61975	.	-	ATREP3	Helitron	RC	892	short	1439	high	5942903	chromoarm	330	no-CHH	no-CHH	.	.	.	.	.
Chr5	17161369	17161779	AT5TE61980	.	-	HELITRONY3	Helitron	RC	410	short	1399	high	5942967	chromoarm	394	no-CHH	no-CHH	.	.	.	.	.
Chr5	17162197	17162233	AT5TE61985	.	+	TNAT1A	.	DNA	36	tiny	162	medium	5943795	chromoarm	962	no-CHH	no-CHH	.	.	.	.	.
Chr5	17162233	17162801	AT5TE61990	.	+	TNAT1A	.	DNA	568	short	162	medium	5943831	chromoarm	394	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	17162801	17162827	AT5TE61995	.	+	TNAT1A	.	DNA	26	tiny	162	medium	5944399	chromoarm	368	no-CHH	no-CHH	.	.	.	.	.
Chr5	17162827	17162862	AT5TE62000	.	-	ATREP4	Helitron	RC	35	tiny	832	high	5944425	chromoarm	333	no-CHH	no-CHH	.	.	.	.	.
Chr5	17162862	17163733	AT5TE62005	.	+	ATREP10B	Helitron	RC	871	short	491	high	5944460	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	17166235	17166713	AT5TE62010	.	+	ATREP9	Helitron	RC	478	short	201	high	5947833	chromoarm	359	no-CHH	no-CHH	.	.	.	.	.
Chr5	17169792	17169921	AT5TE62020	.	-	ATGP10	Gypsy	LTR	129	short	165	medium	5951390	chromoarm	455	no-CHH	no-CHH	.	.	.	.	.
Chr5	17169994	17170114	AT5TE62025	.	+	ATREP10	Helitron	RC	120	short	63	medium	5951592	chromoarm	330	no-CHH	no-CHH	.	.	.	.	.
Chr5	17172718	17172744	AT5TE62030	.	+	BRODYAGA1A	MuDR	DNA	26	tiny	586	high	5954316	chromoarm	461	no-CHH	no-CHH	.	.	.	.	.
Chr5	17172744	17174527	AT5TE62035	.	+	ATREP1	Helitron	RC	1783	short	498	high	5954342	chromoarm	487	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	17173202	17173482	AT5TE62040	.	-	HELITRONY2	Helitron	RC	280	short	198	medium	5954800	chromoarm	945	no-CHH	no-CHH	.	.	.	.	.
Chr5	17174528	17174606	AT5TE62045	.	-	BRODYAGA2	MuDR	DNA	79	tiny	525	high	5956125	chromoarm	1777	.	.	.	.	.	.	.
Chr5	17175209	17175401	AT5TE62050	.	+	BRODYAGA1A	MuDR	DNA	192	short	586	high	5956807	chromoarm	982	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	17197157	17197232	AT5TE62130	.	-	ATREP4	Helitron	RC	75	tiny	832	high	5978755	chromoarm	0	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	17197232	17197793	AT5TE62135	.	+	HELITRONY3	Helitron	RC	561	short	1399	high	5978830	chromoarm	69	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	17200025	17201323	AT5TE62140	.	-	ATREP15	Helitron	RC	1298	short	1003	high	5981623	chromoarm	90	no-CHH	no-CHH	.	.	.	.	.
Chr5	17202352	17203048	AT5TE62145	.	+	ARNOLD2	MuDR	DNA	696	short	68	medium	5983950	chromoarm	29	no-CHH	no-CHH	.	.	.	.	.
Chr5	17203155	17203768	AT5TE62150	.	+	ATREP1	Helitron	RC	613	short	498	high	5984753	chromoarm	139	no-CHH	no-CHH	.	.	.	.	.
Chr5	17209810	17209857	AT5TE62170	.	+	ATGP1	Gypsy	LTR	47	tiny	144	medium	5991408	chromoarm	288	no-CHH	no-CHH	.	.	.	.	.
Chr5	17209857	17210641	AT5TE62175	.	+	ATGP1	Gypsy	LTR	784	short	144	medium	5991455	chromoarm	96	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	17211858	17212352	AT5TE62180	.	+	ATREP1	Helitron	RC	494	short	498	high	5993456	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	17219798	17220327	AT5TE62210	.	-	ATENSPM9	En-Spm	DNA	529	short	97	medium	6001396	chromoarm	627	no-CHH	no-CHH	.	.	.	.	.
Chr5	17221021	17221120	AT5TE62215	.	-	ATREP4	Helitron	RC	99	tiny	832	high	6002619	chromoarm	1850	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	17221120	17221914	AT5TE62220	.	-	ATREP10D	Helitron	RC	794	short	1295	high	6002718	chromoarm	1949	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	17232488	17233751	AT5TE62260	.	+	ATREP15	Helitron	RC	1263	short	1003	high	6014086	chromoarm	0	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	17233751	17233815	AT5TE62265	.	-	ATREP1	Helitron	RC	64	tiny	498	high	6015349	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	17234101	17234862	AT5TE62270	.	-	ATREP10B	Helitron	RC	761	short	491	high	6015699	chromoarm	0	no-RdDM	no-CHH	.	.	.	.	.
Chr5	17234862	17234925	AT5TE62275	.	-	ATCOPIA30	Copia	LTR	63	tiny	33	low	6016460	chromoarm	258	no-CHH	no-CHH	.	.	.	.	.
Chr5	17235087	17235172	AT5TE62280	.	-	ATDNAI27T9C	MuDR	DNA	85	tiny	108	medium	6016685	chromoarm	11	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	17240819	17241076	AT5TE62300	.	+	BRODYAGA1A	MuDR	DNA	257	short	586	high	6022417	chromoarm	170	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	17247497	17247600	AT5TE62320	.	-	HELITRONY3	Helitron	RC	103	short	1399	high	6029095	chromoarm	295	no-CHH	no-CHH	.	.	.	.	.
Chr5	17247600	17248220	AT5TE62325	.	-	ATREP2	Helitron	RC	620	short	164	medium	6029198	chromoarm	342	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	17248220	17248248	AT5TE62330	.	-	HELITRONY1B	Helitron	RC	28	tiny	414	high	6029818	chromoarm	314	no-CHH	no-CHH	.	.	.	.	.
Chr5	17248248	17248325	AT5TE62335	.	+	HELITRONY1D	Helitron	RC	77	tiny	756	high	6029846	chromoarm	237	no-CHH	no-CHH	.	.	.	.	.
Chr5	17251771	17251905	AT5TE62345	.	-	AT9NMU1	MuDR	DNA	134	short	45	low	6033369	chromoarm	757	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	17251992	17252469	AT5TE62350	.	-	AT9MU1	MuDR	DNA	477	short	10	low	6033590	chromoarm	978	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	17253052	17253429	AT5TE62355	.	-	ATMU1	MuDR	DNA	377	short	59	medium	6034650	chromoarm	1996	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	17254002	17254378	AT5TE62360	.	-	AT9MU1	MuDR	DNA	376	short	10	low	6035600	chromoarm	1047	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	17258677	17258749	AT5TE62370	.	+	ATLINE1_3A	L1	LINE	72	tiny	160	medium	6040275	chromoarm	241	no-CHH	no-RdDM	.	.	.	.	.
Chr5	17258749	17258879	AT5TE62375	.	+	DT1	Mariner	DNA	130	short	123	medium	6040347	chromoarm	111	no-CHH	no-CHH	.	.	.	.	.
Chr5	17261105	17261412	AT5TE62380	.	+	ATMUNX1	MuDR	DNA	307	short	155	medium	6042703	chromoarm	420	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	17261412	17261670	AT5TE62385	.	-	ATCOPIA24	Copia	LTR	258	short	27	low	6043010	chromoarm	727	no-CHH	no-CHH	.	.	.	.	.
Chr5	17263107	17263801	AT5TE62390	.	+	ATREP4	Helitron	RC	694	short	832	high	6044705	chromoarm	163	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	17266016	17266868	AT5TE62395	.	-	ATREP6	Helitron	RC	852	short	181	medium	6047614	chromoarm	396	no-CHH	no-CHH	.	.	.	.	.
Chr5	17266868	17267066	AT5TE62400	.	-	ATREP7	Helitron	RC	198	short	164	medium	6048466	chromoarm	1248	no-CHH	no-CHH	.	.	.	.	.
Chr5	17267066	17267681	AT5TE62405	.	-	TAG3N1	HAT	DNA	615	short	97	medium	6048664	chromoarm	722	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	17267681	17267925	AT5TE62410	.	+	ATREP3	Helitron	RC	244	short	1439	high	6049279	chromoarm	478	no-CHH	no-CHH	.	.	.	.	.
Chr5	17272916	17273134	AT5TE62420	.	+	ATREP1	Helitron	RC	218	short	498	high	6054514	chromoarm	799	no-CHH	no-CHH	.	.	.	.	.
Chr5	17273134	17273919	AT5TE62425	.	+	ATREP15	Helitron	RC	785	short	1003	high	6054732	chromoarm	1017	no-CHH	no-CHH	.	.	.	.	.
Chr5	17274573	17275130	AT5TE62430	.	+	BRODYAGA1A	MuDR	DNA	557	short	586	high	6056171	chromoarm	2456	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	17275130	17275174	AT5TE62435	.	-	ATREP10	Helitron	RC	44	tiny	63	medium	6056728	chromoarm	3013	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	17275174	17276550	AT5TE62440	.	-	ATREP10B	Helitron	RC	1376	short	491	high	6056772	chromoarm	3057	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	17276550	17277025	AT5TE62445	.	-	BRODYAGA1A	MuDR	DNA	475	short	586	high	6058148	chromoarm	4433	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	17277025	17277048	AT5TE62450	.	+	ATREP5	Helitron	RC	23	tiny	624	high	6058623	chromoarm	4908	no-CHH	no-CHH	.	.	.	.	.
Chr5	17278172	17280197	AT5TE62455	.	+	ATLINEIII	L1	LINE	2025	medium	196	medium	6059770	chromoarm	4385	no-RdDM	no-RdDM	ExpressedAndAnnotated	17280032	17271581	-	transcript_id-"31bfa94f-3047-478e-8b14-d393546202b4|5"
Chr5	17280784	17280869	AT5TE62460	.	+	ATREP10C	Helitron	RC	85	tiny	123	medium	6062382	chromoarm	3713	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	17281828	17282044	AT5TE62465	.	-	ATLINE1A	L1	LINE	216	short	289	high	6063426	chromoarm	2538	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	17283626	17283778	AT5TE62470	.	+	RathE1_cons	.	RathE1_cons	152	short	213	high	6065224	chromoarm	804	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	17287390	17287526	AT5TE62480	.	+	ATREP5	Helitron	RC	136	short	624	high	6068988	chromoarm	1732	no-CHH	no-CHH	.	.	.	.	.
Chr5	17287526	17288131	AT5TE62485	.	-	HELITRONY1B	Helitron	RC	605	short	414	high	6069124	chromoarm	1127	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	17288131	17288290	AT5TE62490	.	+	HELITRONY1E	Helitron	RC	159	short	447	high	6069729	chromoarm	968	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	17290683	17290926	AT5TE62495	.	+	ATMUNX1	MuDR	DNA	243	short	155	medium	6072281	chromoarm	957	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	17292693	17292858	AT5TE62500	.	-	ATMU2	MuDR	DNA	165	short	64	medium	6074291	chromoarm	368	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	17298375	17298579	AT5TE62520	.	+	ATDNA2T9C	MuDR	DNA	204	short	242	high	6079973	chromoarm	204	no-CHH	no-CHH	.	.	.	.	.
Chr5	17302772	17302959	AT5TE62530	.	-	HELITRONY1D	Helitron	RC	187	short	756	high	6084370	chromoarm	54	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	17302959	17303131	AT5TE62535	.	+	ATREP4	Helitron	RC	172	short	832	high	6084557	chromoarm	241	no-CHH	no-CHH	.	.	.	.	.
Chr5	17303148	17304497	AT5TE62540	.	-	ATREP11	Helitron	RC	1349	short	841	high	6084746	chromoarm	430	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	17304812	17309087	AT5TE62545	.	+	ATLINE1_1	L1	LINE	4275	medium	61	medium	6086410	chromoarm	754	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	17324069	17324660	AT5TE62600	.	-	ATREP15	Helitron	RC	591	short	1003	high	6105667	chromoarm	415	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	17324660	17324747	AT5TE62605	.	+	BRODYAGA2	MuDR	DNA	87	tiny	525	high	6106258	chromoarm	328	no-CHH	no-CHH	.	.	.	.	.
Chr5	17341056	17341553	AT5TE62660	.	-	VANDAL17	MuDR	DNA	497	short	178	medium	6122654	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	17359901	17360111	AT5TE62730	.	-	ATREP8	Helitron	RC	210	short	75	medium	6141499	chromoarm	415	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	17364186	17371758	AT5TE62740	.	-	ATREP10D	Helitron	RC	7572	long	1295	high	6145784	chromoarm	0	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	17365025	17365067	AT5TE62745	.	+	ATREP3	Helitron	RC	42	tiny	1439	high	6146623	chromoarm	2879	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	17365067	17367207	AT5TE62750	.	+	ATREP3	Helitron	RC	2140	medium	1439	high	6146665	chromoarm	739	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	17367207	17367400	AT5TE62755	.	+	ATREP1	Helitron	RC	193	short	498	high	6148805	chromoarm	546	no-CHH	no-CHH	.	.	.	.	.
Chr5	17371758	17371985	AT5TE62765	.	+	ATREP3	Helitron	RC	227	short	1439	high	6153356	chromoarm	1	no-CHH	no-CHH	.	.	.	.	.
Chr5	17378208	17378365	AT5TE62780	.	-	ATHILA7	Gypsy	LTR	157	short	134	medium	6159806	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	17389596	17390373	AT5TE62820	.	+	ATREP3	Helitron	RC	777	short	1439	high	6171194	chromoarm	178	no-CHH	no-CHH	.	.	.	.	.
Chr5	17395473	17395641	AT5TE62830	.	-	HELITRONY1E	Helitron	RC	168	short	447	high	6177071	chromoarm	325	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	17395641	17396982	AT5TE62835	.	-	ATREP4	Helitron	RC	1341	short	832	high	6177239	chromoarm	493	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	17396982	17398921	AT5TE62840	.	-	ATREP1	Helitron	RC	1939	short	498	high	6178580	chromoarm	996	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	17398921	17399441	AT5TE62845	.	+	HELITRONY1D	Helitron	RC	520	short	756	high	6180519	chromoarm	476	no-CHH	no-CHH	.	.	.	.	.
Chr5	17405404	17405467	AT5TE62860	.	-	ARNOLDY2	MuDR	DNA	63	tiny	288	high	6187002	chromoarm	3761	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	17405467	17407225	AT5TE62865	.	-	ARNOLDY2	MuDR	DNA	1758	short	288	high	6187065	chromoarm	2298	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	17407243	17407414	AT5TE62870	.	-	HELITRONY3	Helitron	RC	171	short	1399	high	6188841	chromoarm	2109	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	17407414	17408085	AT5TE62875	.	-	ATREP1	Helitron	RC	671	short	498	high	6189012	chromoarm	1438	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	17411391	17412065	AT5TE62885	.	+	ATCOPIA95	Copia	LTR	674	short	72	medium	6192989	chromoarm	177	no-CHH	no-CHH	.	.	.	.	.
Chr5	17412065	17413087	AT5TE62890	.	-	VANDALNX2	MuDR	DNA	1022	short	37	low	6193663	chromoarm	851	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	17413087	17413148	AT5TE62895	.	-	ATREP11	Helitron	RC	61	tiny	841	high	6194685	chromoarm	1873	no-CHH	no-CHH	.	.	.	.	.
Chr5	17418682	17418754	AT5TE62910	.	+	HELITRONY1E	Helitron	RC	72	tiny	447	high	6200280	chromoarm	884	no-CHH	no-CHH	.	.	.	.	.
Chr5	17418754	17419052	AT5TE62915	.	+	ATREP10B	Helitron	RC	298	short	491	high	6200352	chromoarm	956	no-CHH	no-CHH	.	.	.	.	.
Chr5	17419052	17419843	AT5TE62920	.	+	HELITRONY1D	Helitron	RC	791	short	756	high	6200650	chromoarm	453	no-CHH	no-CHH	.	.	.	.	.
Chr5	17425249	17425420	AT5TE62940	.	-	ATLINE1_6	L1	LINE	171	short	129	medium	6206847	chromoarm	378	no-CHH	no-CHH	.	.	.	.	.
Chr5	17425421	17425502	AT5TE62945	.	+	ATLINE1_6	L1	LINE	81	tiny	129	medium	6207019	chromoarm	550	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	17428311	17430036	AT5TE62955	.	-	ATREP15	Helitron	RC	1725	short	1003	high	6209909	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	17430036	17430317	AT5TE62960	.	-	ATREP11	Helitron	RC	281	short	841	high	6211634	chromoarm	939	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	17432486	17433293	AT5TE62965	.	-	ATDNA12T3_2	.	DNA	807	short	660	high	6214084	chromoarm	1716	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	17436178	17436829	AT5TE62975	.	+	ATHATN7	HAT	DNA	652	short	71	medium	6217775	chromoarm	772	.	.	.	.	.	.	.
Chr5	17436829	17436940	AT5TE62980	.	-	ATREP3	Helitron	RC	111	short	1439	high	6218427	chromoarm	1424	no-CHH	no-CHH	.	.	.	.	.
Chr5	17437330	17437388	AT5TE62985	.	-	HELITRONY1E	Helitron	RC	58	tiny	447	high	6218928	chromoarm	1925	no-CHH	no-CHH	.	.	.	.	.
Chr5	17437388	17437417	AT5TE62990	.	-	ATREP4	Helitron	RC	29	tiny	832	high	6218986	chromoarm	1983	no-CHH	no-CHH	.	.	.	.	.
Chr5	17437417	17438677	AT5TE62995	.	-	ATREP10D	Helitron	RC	1260	short	1295	high	6219015	chromoarm	2012	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	17438677	17438846	AT5TE63000	.	+	ATREP10D	Helitron	RC	169	short	1295	high	6220275	chromoarm	3272	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	17438846	17438940	AT5TE63005	.	+	ATREP3	Helitron	RC	94	tiny	1439	high	6220444	chromoarm	3441	no-CHH	no-CHH	.	.	.	.	.
Chr5	17439695	17440858	AT5TE63010	.	+	ATLINE1_6	L1	LINE	1163	short	129	medium	6221293	chromoarm	4290	no-RdDM	no-RdDM	ExpressedAndAnnotated	17440740,17439855	17439602,17439649	-,-	transcript_id-"08617b7b-e1bc-496a-93a3-58e2e85e2831|3",transcript_id-"91060e1c-dcf3-4944-93f3-08da894125a1|3"
Chr5	17441766	17441791	AT5TE63015	.	+	ATLINE1_6	L1	LINE	25	tiny	129	medium	6223364	chromoarm	6361	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	17441791	17445927	AT5TE63020	.	+	ATLINE1_6	L1	LINE	4136	medium	129	medium	6223389	chromoarm	5862	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	17446863	17447640	AT5TE63025	.	-	ATREP15	Helitron	RC	777	short	1003	high	6228461	chromoarm	4149	no-CHH	no-CHH	.	.	.	.	.
Chr5	17447958	17448910	AT5TE63030	.	+	ATREP10D	Helitron	RC	952	short	1295	high	6229556	chromoarm	2879	no-CHH	no-CHH	.	.	.	.	.
Chr5	17464876	17465496	AT5TE63090	.	+	ATREP10B	Helitron	RC	620	short	491	high	6246474	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	17473458	17474026	AT5TE63120	.	-	ATREP10A	Helitron	RC	568	short	279	high	6255056	chromoarm	29	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	17474026	17474252	AT5TE63125	.	+	HELITRONY1D	Helitron	RC	226	short	756	high	6255624	chromoarm	0	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr5	17474253	17474275	AT5TE63130	.	+	ATREP4	Helitron	RC	23	tiny	832	high	6255850	chromoarm	0	.	.	.	.	.	.	.
Chr5	17475155	17475207	AT5TE63135	.	+	ATREP3	Helitron	RC	52	tiny	1439	high	6256753	chromoarm	677	no-CHH	no-CHH	.	.	.	.	.
Chr5	17475207	17477593	AT5TE63140	.	-	ARNOLDY2	MuDR	DNA	2386	medium	288	high	6256805	chromoarm	426	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	17477593	17477902	AT5TE63145	.	-	ARNOLDY1	MuDR	DNA	309	short	237	high	6259191	chromoarm	117	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	17477902	17478159	AT5TE63150	.	-	ARNOLDY2	MuDR	DNA	257	short	288	high	6259500	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	17478159	17478412	AT5TE63155	.	+	HELITRONY3	Helitron	RC	253	short	1399	high	6259757	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	17478412	17478874	AT5TE63160	.	+	ATREP10	Helitron	RC	462	short	63	medium	6260010	chromoarm	22	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	17479388	17479615	AT5TE63165	.	-	ATHATN7	HAT	DNA	227	short	71	medium	6260986	chromoarm	998	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	17479806	17480927	AT5TE63170	.	-	ATREP15	Helitron	RC	1121	short	1003	high	6261404	chromoarm	1416	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	17480524	17480646	AT5TE63175	.	+	ATMUNX1	MuDR	DNA	122	short	155	medium	6262122	chromoarm	2134	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	17480927	17480947	AT5TE63180	.	-	BRODYAGA2	MuDR	DNA	20	tiny	525	high	6262525	chromoarm	2537	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	17480947	17481089	AT5TE63185	.	+	ATREP1	Helitron	RC	142	short	498	high	6262545	chromoarm	2557	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	17481089	17482987	AT5TE63190	.	+	ATREP1	Helitron	RC	1898	short	498	high	6262687	chromoarm	1446	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	17483357	17483673	AT5TE63195	.	-	ARNOLDY1	MuDR	DNA	316	short	237	high	6264955	chromoarm	760	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	17483673	17485018	AT5TE63200	.	+	ATREP11	Helitron	RC	1345	short	841	high	6265271	chromoarm	0	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr5	17486710	17486808	AT5TE63205	.	-	ATREP15	Helitron	RC	98	tiny	1003	high	6268308	chromoarm	519	no-CHH	no-CHH	.	.	.	.	.
Chr5	17486808	17488025	AT5TE63210	.	-	ATREP11	Helitron	RC	1217	short	841	high	6268406	chromoarm	123	no-CHH	no-CHH	.	.	.	.	.
Chr5	17488026	17488138	AT5TE63215	.	+	BRODYAGA2	MuDR	DNA	113	short	525	high	6269623	chromoarm	10	.	.	LowExpressed	.	.	.	.
Chr5	17488138	17488260	AT5TE63220	.	-	BRODYAGA2	MuDR	DNA	122	short	525	high	6269736	chromoarm	0	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	17488260	17488834	AT5TE63225	.	+	ATREP6	Helitron	RC	574	short	181	medium	6269858	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	17491019	17491068	AT5TE63230	.	+	TAG2	HAT	DNA	49	tiny	86	medium	6272617	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	17498853	17498911	AT5TE63260	.	-	ATREP11	Helitron	RC	58	tiny	841	high	6280451	chromoarm	590	no-CHH	no-CHH	.	.	.	.	.
Chr5	17498911	17500262	AT5TE63265	.	-	ATREP4	Helitron	RC	1351	short	832	high	6280509	chromoarm	648	no-CHH	no-CHH	.	.	.	.	.
Chr5	17500262	17500400	AT5TE63270	.	+	ATREP10D	Helitron	RC	138	short	1295	high	6281860	chromoarm	642	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	17506490	17507111	AT5TE63290	.	-	HELITRONY1B	Helitron	RC	621	short	414	high	6288088	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	17520988	17521821	AT5TE63340	.	-	BRODYAGA2	MuDR	DNA	833	short	525	high	6302586	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	17537754	17537924	AT5TE63400	.	+	ATCOPIA77	Copia	LTR	170	short	6	low	6319352	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	17541919	17542000	AT5TE63410	.	+	ATREP11	Helitron	RC	81	tiny	841	high	6323517	chromoarm	186	no-CHH	no-CHH	.	.	.	.	.
Chr5	17542000	17542988	AT5TE63415	.	-	ATREP5	Helitron	RC	988	short	624	high	6323598	chromoarm	267	no-CHH	no-RdDM	.	.	.	.	.
Chr5	17542988	17543093	AT5TE63420	.	+	ATHPOGON1	Pogo	DNA	105	short	174	medium	6324586	chromoarm	980	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	17543093	17543257	AT5TE63425	.	+	HELITRON2	Helitron	RC	164	short	194	medium	6324691	chromoarm	816	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	17547300	17548082	AT5TE63435	.	-	BRODYAGA2	MuDR	DNA	782	short	525	high	6328898	chromoarm	32	no-CHH	no-CHH	.	.	.	.	.
Chr5	17549202	17549318	AT5TE63440	.	-	ATTIRX1C	.	DNA	116	short	39	low	6330800	chromoarm	651	no-CHH	no-CHH	.	.	.	.	.
Chr5	17564822	17564911	AT5TE63500	.	+	ATREP10D	Helitron	RC	89	tiny	1295	high	6346420	chromoarm	1098	no-CHH	no-CHH	.	.	.	.	.
Chr5	17564911	17565741	AT5TE63505	.	+	HELITRONY3	Helitron	RC	830	short	1399	high	6346509	chromoarm	268	no-CHH	no-CHH	.	.	.	.	.
Chr5	17576337	17577349	AT5TE63540	.	-	ATREP9	Helitron	RC	1012	short	201	high	6357935	chromoarm	1383	no-CHH	no-CHH	.	.	.	.	.
Chr5	17577451	17577671	AT5TE63545	.	-	HELITRONY3	Helitron	RC	220	short	1399	high	6359049	chromoarm	2428	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	17577671	17577731	AT5TE63550	.	-	TNAT1A	.	DNA	60	tiny	162	medium	6359269	chromoarm	2368	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	17577731	17578241	AT5TE63555	.	-	TNAT1A	.	DNA	510	short	162	medium	6359329	chromoarm	1858	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	17578241	17579599	AT5TE63560	.	+	ATREP6	Helitron	RC	1358	short	181	medium	6359839	chromoarm	500	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	17579599	17579643	AT5TE63565	.	+	ATREP7	Helitron	RC	44	tiny	164	medium	6361197	chromoarm	456	no-CHH	no-RdDM	.	.	.	.	.
Chr5	17584525	17584665	AT5TE63575	.	+	VANDAL16	MuDR	DNA	140	short	42	low	6366123	chromoarm	753	no-CHH	no-CHH	.	.	.	.	.
Chr5	17596758	17605846	AT5TE63610	.	+	ENDOVIR1	Copia	LTR	9088	long	15	low	6378356	chromoarm	3277	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	17603342,17603342,17603342	17605189,17605812,17605818	+,+,+	transcript_id-"2e916a3e-653a-4eca-b6b6-257df2e28a3b|38",transcript_id-"dcc05577-0f29-4c7d-8630-d1cdee058e5c|4",transcript_id-"26915db4-aa10-4983-ad89-ccef61aa27e6|20"
Chr5	17616869	17618656	AT5TE63650	.	-	ATREP3	Helitron	RC	1787	short	1439	high	6398467	chromoarm	291	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	17617756	17617781	AT5TE63655	.	-	ATREP3	Helitron	RC	26	tiny	1439	high	6399353	chromoarm	1166	.	.	.	.	.	.	.
Chr5	17618656	17618757	AT5TE63660	.	-	ATREP15	Helitron	RC	101	short	1003	high	6400254	chromoarm	190	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	17624413	17624796	AT5TE63680	.	-	ATREP10D	Helitron	RC	383	short	1295	high	6406011	chromoarm	174	no-CHH	no-CHH	.	.	.	.	.
Chr5	17629740	17630427	AT5TE63690	.	+	ATREP4	Helitron	RC	687	short	832	high	6411338	chromoarm	64	no-CHH	no-CHH	.	.	.	.	.
Chr5	17644359	17644660	AT5TE63740	.	+	ATLINE1A	L1	LINE	302	short	289	high	6425956	chromoarm	1510	.	.	.	.	.	.	.
Chr5	17653512	17653967	AT5TE63770	.	-	ATREP10A	Helitron	RC	455	short	279	high	6435110	chromoarm	3273	no-CHH	no-CHH	.	.	.	.	.
Chr5	17653967	17654039	AT5TE63775	.	+	BRODYAGA2	MuDR	DNA	72	tiny	525	high	6435565	chromoarm	3201	no-CHH	no-CHH	.	.	.	.	.
Chr5	17670521	17670856	AT5TE63830	.	+	ATREP5	Helitron	RC	335	short	624	high	6452119	chromoarm	436	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	17671230	17671291	AT5TE63835	.	-	ATREP15	Helitron	RC	61	tiny	1003	high	6452828	chromoarm	1145	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	17671291	17671662	AT5TE63840	.	+	VANDAL5	MuDR	DNA	371	short	85	medium	6452889	chromoarm	1206	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	17671672	17672613	AT5TE63845	.	-	BRODYAGA2	MuDR	DNA	941	short	525	high	6453270	chromoarm	783	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	17672613	17672669	AT5TE63850	.	+	ATREP3	Helitron	RC	56	tiny	1439	high	6454211	chromoarm	727	no-CHH	no-CHH	.	.	.	.	.
Chr5	17672669	17672712	AT5TE63855	.	+	ATREP19	.	DNA	43	tiny	189	medium	6454267	chromoarm	684	no-CHH	no-CHH	.	.	.	.	.
Chr5	17675945	17676607	AT5TE63865	.	-	ATREP5	Helitron	RC	662	short	624	high	6457543	chromoarm	315	no-CHH	no-CHH	.	.	.	.	.
Chr5	17710420	17711112	AT5TE63990	.	+	HELITRONY1D	Helitron	RC	692	short	756	high	6492018	chromoarm	1221	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	17711112	17711138	AT5TE63995	.	-	ATDNA12T3_2	.	DNA	26	tiny	660	high	6492710	chromoarm	1294	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	17717731	17718148	AT5TE64010	.	-	BRODYAGA1A	MuDR	DNA	417	short	586	high	6499329	chromoarm	0	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	17726226	17727004	AT5TE64040	.	+	ATREP2	Helitron	RC	778	short	164	medium	6507824	chromoarm	17	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	17730997	17731082	AT5TE64050	.	+	ATDNAI27T9A	MuDR	DNA	85	tiny	116	medium	6512595	chromoarm	126	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	17740218	17742501	AT5TE64080	.	-	ATDNAI27T9B	MuDR	DNA	2283	medium	43	low	6521816	chromoarm	484	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	17740385	17740678	+	transcript_id-"7e1fe984-f1ee-4977-9698-45ea236a9e69|3"
Chr5	17748873	17749028	AT5TE64100	.	+	HARBINGER	Harbinger	DNA	155	short	90	medium	6530471	chromoarm	425	no-CHH	no-CHH	.	.	.	.	.
Chr5	17768750	17768880	AT5TE64170	.	+	ATMUNX1	MuDR	DNA	130	short	155	medium	6550348	chromoarm	3649	no-CHH	no-CHH	.	.	.	.	.
Chr5	17770094	17770914	AT5TE64175	.	+	ATREP15	Helitron	RC	820	short	1003	high	6551692	chromoarm	2176	no-CHH	no-CHH	.	.	.	.	.
Chr5	17770402	17770705	AT5TE64180	.	-	ATCOPIA65	Copia	LTR	303	short	34	low	6552000	chromoarm	2385	no-CHH	no-CHH	.	.	.	.	.
Chr5	17772083	17772649	AT5TE64185	.	-	ATDNA2T9C	MuDR	DNA	566	short	242	high	6553681	chromoarm	441	no-CHH	no-CHH	.	.	.	.	.
Chr5	17775518	17778097	AT5TE64195	.	-	ATREP3	Helitron	RC	2579	medium	1439	high	6557116	chromoarm	5	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	17778108	17778405	AT5TE64200	.	+	ATREP6	Helitron	RC	297	short	181	medium	6559706	chromoarm	1988	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	17778599	17778959	AT5TE64205	.	+	HELITRON4	Helitron	RC	360	short	199	medium	6560197	chromoarm	1434	no-CHH	no-CHH	.	.	.	.	.
Chr5	17781776	17781992	AT5TE64215	.	-	ATHILA7	Gypsy	LTR	216	short	134	medium	6563374	chromoarm	678	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	17784663	17784855	AT5TE64220	.	+	ATCOPIA68	Copia	LTR	192	short	43	low	6566261	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	17795704	17796054	AT5TE64260	.	-	ATREP3	Helitron	RC	350	short	1439	high	6577302	chromoarm	2380	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	17796055	17796174	AT5TE64265	.	-	ATREP3	Helitron	RC	120	short	1439	high	6577652	chromoarm	2260	.	.	.	.	.	.	.
Chr5	17796174	17798209	AT5TE64270	.	+	ATREP3	Helitron	RC	2035	medium	1439	high	6577772	chromoarm	225	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	17798209	17798346	AT5TE64275	.	-	ATREP10A	Helitron	RC	137	short	279	high	6579807	chromoarm	88	no-CHH	no-CHH	.	.	.	.	.
Chr5	17804187	17804766	AT5TE64290	.	-	ATREP10A	Helitron	RC	579	short	279	high	6585785	chromoarm	312	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	17804766	17804789	AT5TE64295	.	-	ATREP10	Helitron	RC	23	tiny	63	medium	6586364	chromoarm	891	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	17805570	17805942	AT5TE64300	.	+	ATLINE1_3A	L1	LINE	372	short	160	medium	6587168	chromoarm	799	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	17811517	17811727	AT5TE64320	.	-	ATREP15	Helitron	RC	210	short	1003	high	6593115	chromoarm	153	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	17811727	17812566	AT5TE64325	.	+	ATREP3	Helitron	RC	839	short	1439	high	6593325	chromoarm	363	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	17812566	17812724	AT5TE64330	.	-	HELITRONY1E	Helitron	RC	158	short	447	high	6594164	chromoarm	1202	no-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	17812724	17813744	AT5TE64335	.	-	HELITRONY2	Helitron	RC	1020	short	198	medium	6594322	chromoarm	591	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	17825940	17826637	AT5TE64380	.	-	HELITRON2	Helitron	RC	697	short	194	medium	6607538	chromoarm	320	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	17827750	17828312	AT5TE64385	.	+	ATGP3	Gypsy	LTR	562	short	60	medium	6609348	chromoarm	1661	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	17828330	17828572	AT5TE64390	.	+	VANDAL16	MuDR	DNA	242	short	42	low	6609928	chromoarm	1401	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	17831393	17831705	AT5TE64400	.	+	HELITRONY2	Helitron	RC	312	short	198	medium	6612991	chromoarm	274	no-CHH	no-CHH	.	.	.	.	.
Chr5	17833559	17833840	AT5TE64405	.	+	RathE2_cons	.	RathE2_cons	281	short	74	medium	6615157	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	17842110	17842573	AT5TE64430	.	+	ATMU6N1	MuDR	DNA	463	short	39	low	6623708	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	17843851	17843893	AT5TE64435	.	+	ATREP11	Helitron	RC	42	tiny	841	high	6625449	chromoarm	661	no-CHH	no-CHH	.	.	.	.	.
Chr5	17843893	17844764	AT5TE64440	.	-	ATHPOGON3	Pogo	DNA	871	short	118	medium	6625491	chromoarm	606	no-CHH	no-CHH	.	.	.	.	.
Chr5	17850110	17850203	AT5TE64450	.	+	ATHAT3	HAT	DNA	93	tiny	23	low	6631708	chromoarm	674	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	17850316	17852659	AT5TE64455	.	+	VANDAL2N1	MuDR	DNA	2343	medium	51	medium	6631914	chromoarm	251	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	17852659	17852772	AT5TE64460	.	+	VANDAL2	MuDR	DNA	113	short	43	low	6634257	chromoarm	138	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	17863878	17864381	AT5TE64500	.	-	ATREP15	Helitron	RC	503	short	1003	high	6645476	chromoarm	246	no-CHH	no-CHH	.	.	.	.	.
Chr5	17867034	17868790	AT5TE64505	.	+	VANDAL3	MuDR	DNA	1756	short	177	medium	6648632	chromoarm	1402	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	17868906	17869402	AT5TE64510	.	+	VANDAL3	MuDR	DNA	496	short	177	medium	6650504	chromoarm	2697	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	17870726	17871139	AT5TE64515	.	-	ATHPOGON1	Pogo	DNA	413	short	174	medium	6652324	chromoarm	960	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	17871298	17871670	AT5TE64520	.	-	ATCOPIA25	Copia	LTR	372	short	9	low	6652896	chromoarm	429	no-CHH	no-CHH	.	.	.	.	.
Chr5	17877226	17877502	AT5TE64540	.	-	ATDNAI26T9	MuDR	DNA	276	short	25	low	6658824	chromoarm	781	no-CHH	no-CHH	.	.	.	.	.
Chr5	17877502	17877531	AT5TE64545	.	+	VANDAL4	MuDR	DNA	29	tiny	102	medium	6659100	chromoarm	1057	no-CHH	no-CHH	.	.	.	.	.
Chr5	17881727	17881975	AT5TE64555	.	-	ATTIRTA1	Tc1	DNA	248	short	95	medium	6663325	chromoarm	353	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	17884022	17884303	AT5TE64560	.	-	ATTIRX1D	.	DNA	281	short	28	low	6665620	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	17885159	17886062	AT5TE64565	.	+	ATREP15	Helitron	RC	903	short	1003	high	6666757	chromoarm	253	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	17885690	17885949	AT5TE64570	.	-	ATREP2	Helitron	RC	259	short	164	medium	6667288	chromoarm	415	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	17885950	17885999	AT5TE64575	.	+	VANDAL8	MuDR	DNA	50	tiny	123	medium	6667547	chromoarm	365	.	.	.	.	.	.	.
Chr5	17888910	17889393	AT5TE64585	.	-	ATREP15	Helitron	RC	483	short	1003	high	6670508	chromoarm	839	no-CHH	no-CHH	.	.	.	.	.
Chr5	17890063	17890586	AT5TE64590	.	+	ATCOPIA82	Copia	LTR	523	short	7	low	6671661	chromoarm	659	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	17890622	17890877	AT5TE64595	.	-	ATREP11	Helitron	RC	255	short	841	high	6672220	chromoarm	368	no-RdDM	no-CHH	.	.	.	.	.
Chr5	17893550	17901550	AT5TE64600	.	-	VANDAL6	MuDR	DNA	8000	long	89	medium	6675148	chromoarm	697	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	17893773,17893803,17897720	17896535,17896516,17896831	+,+,-	transcript_id-"93b52b52-9634-40d5-a3bb-7bc73fc67538|5",transcript_id-"3dc3b8b6-397e-4e5d-abc5-80bc587d980a|6",transcript_id-"362d61ad-6aa9-485a-875e-3840a1109c26|14"
Chr5	17903295	17903368	AT5TE64605	.	+	ATCOPIA59	Copia	LTR	73	tiny	20	low	6684893	chromoarm	3847	no-CHH	no-CHH	.	.	.	.	.
Chr5	17904377	17904407	AT5TE64610	.	-	ATREP1	Helitron	RC	30	tiny	498	high	6685975	chromoarm	2808	no-CHH	no-CHH	.	.	.	.	.
Chr5	17904407	17904515	AT5TE64615	.	-	ATREP15	Helitron	RC	108	short	1003	high	6686005	chromoarm	2700	no-CHH	no-CHH	.	.	.	.	.
Chr5	17904515	17905292	AT5TE64620	.	-	HELITRONY1D	Helitron	RC	777	short	756	high	6686113	chromoarm	1923	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	17912993	17913158	AT5TE64650	.	-	ATLINE1_3A	L1	LINE	165	short	160	medium	6694591	chromoarm	698	no-CHH	no-CHH	.	.	.	.	.
Chr5	17916085	17916358	AT5TE64660	.	+	BRODYAGA1A	MuDR	DNA	273	short	586	high	6697683	chromoarm	68	no-CHH	no-CHH	.	.	.	.	.
Chr5	17919671	17919847	AT5TE64670	.	-	ATREP6	Helitron	RC	176	short	181	medium	6701269	chromoarm	507	no-CHH	no-CHH	.	.	.	.	.
Chr5	17919847	17920528	AT5TE64675	.	-	ATREP1	Helitron	RC	681	short	498	high	6701445	chromoarm	683	no-CHH	no-CHH	.	.	.	.	.
Chr5	17936785	17937093	AT5TE64730	.	-	ATLINE1_3A	L1	LINE	308	short	160	medium	6718383	chromoarm	344	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	17948522	17948749	AT5TE64770	.	+	ATCOPIA28	Copia	LTR	227	short	81	medium	6730120	chromoarm	300	no-CHH	no-CHH	.	.	.	.	.
Chr5	17951811	17952614	AT5TE64780	.	-	BRODYAGA2	MuDR	DNA	803	short	525	high	6733409	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	17953550	17954613	AT5TE64785	.	-	ATREP10D	Helitron	RC	1063	short	1295	high	6735148	chromoarm	688	no-CHH	no-CHH	.	.	.	.	.
Chr5	17954613	17956638	AT5TE64790	.	+	ATREP1	Helitron	RC	2025	medium	498	high	6736211	chromoarm	1751	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	17956639	17956806	AT5TE64795	.	-	ATHATN7	HAT	DNA	168	short	71	medium	6738236	chromoarm	3776	.	.	.	.	.	.	.
Chr5	17956806	17957301	AT5TE64800	.	+	ATREP4	Helitron	RC	495	short	832	high	6738404	chromoarm	3944	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	17958777	17959314	AT5TE64805	.	+	ATREP4	Helitron	RC	537	short	832	high	6740375	chromoarm	2064	no-CHH	no-CHH	.	.	.	.	.
Chr5	17960344	17960704	AT5TE64810	.	-	ATHATN2	HAT	DNA	360	short	46	low	6741942	chromoarm	674	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	17967072	17967512	AT5TE64830	.	-	HELITRONY1D	Helitron	RC	440	short	756	high	6748670	chromoarm	576	no-CHH	no-CHH	.	.	.	.	.
Chr5	17967512	17967834	AT5TE64835	.	+	BRODYAGA1A	MuDR	DNA	322	short	586	high	6749110	chromoarm	360	no-CHH	no-CHH	.	.	.	.	.
Chr5	17967834	17967989	AT5TE64840	.	+	ATREP5	Helitron	RC	155	short	624	high	6749432	chromoarm	205	no-CHH	no-CHH	.	.	.	.	.
Chr5	17970374	17970438	AT5TE64845	.	+	RathE1_cons	.	RathE1_cons	64	tiny	213	high	6751972	chromoarm	270	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	17974191	17974681	AT5TE64855	.	+	ARNOLDY2	MuDR	DNA	490	short	288	high	6755789	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	17975557	17975698	AT5TE64860	.	-	RathE1_cons	.	RathE1_cons	141	short	213	high	6757155	chromoarm	775	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	17991543	17991958	AT5TE64920	.	-	BRODYAGA1A	MuDR	DNA	415	short	586	high	6773141	chromoarm	24	no-CHH	no-CHH	.	.	.	.	.
Chr5	17993839	17994175	AT5TE64925	.	+	ATENSPM1A	En-Spm	DNA	336	short	77	medium	6775437	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	17996703	17996911	AT5TE64930	.	+	ATCOPIA57	Copia	LTR	208	short	48	low	6778301	chromoarm	996	no-CHH	no-CHH	.	.	.	.	.
Chr5	17997223	17997565	AT5TE64935	.	-	ATLINE1_3A	L1	LINE	342	short	160	medium	6778821	chromoarm	342	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	18012750	18013172	AT5TE64990	.	-	HELITRONY2	Helitron	RC	422	short	198	medium	6794348	chromoarm	81	no-CHH	no-RdDM	LowExpressed	.	.	.	.
Chr5	18018126	18019019	AT5TE65000	.	-	HELITRONY1E	Helitron	RC	893	short	447	high	6799724	chromoarm	189	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	18021360	18021911	AT5TE65005	.	-	HELITRON4	Helitron	RC	551	short	199	medium	6802958	chromoarm	94	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	18026881	18028230	AT5TE65015	.	+	ATREP1	Helitron	RC	1349	short	498	high	6808479	chromoarm	988	no-CHH	no-CHH	.	.	.	.	.
Chr5	18028485	18029508	AT5TE65020	.	+	META1	Copia	LTR	1023	short	138	medium	6810083	chromoarm	198	no-CHH	no-CHH	.	.	.	.	.
Chr5	18042788	18042866	AT5TE65070	.	-	ATCOPIA42	Copia	LTR	78	tiny	35	low	6824386	chromoarm	219	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	18063546	18063892	AT5TE65150	.	+	ATLINE1A	L1	LINE	346	short	289	high	6845144	chromoarm	782	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	18063909	18064091	AT5TE65155	.	-	ATREP15	Helitron	RC	182	short	1003	high	6845507	chromoarm	963	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	18064091	18065007	AT5TE65160	.	-	ATREP10A	Helitron	RC	916	short	279	high	6845689	chromoarm	47	no-CHH	no-RdDM	.	.	.	.	.
Chr5	18065007	18065094	AT5TE65165	.	-	ATREP10B	Helitron	RC	87	tiny	491	high	6846605	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	18073278	18074836	AT5TE65190	.	+	ATREP10A	Helitron	RC	1558	short	279	high	6854876	chromoarm	268	no-CHH	no-CHH	.	.	.	.	.
Chr5	18074836	18074866	AT5TE65195	.	+	BRODYAGA2	MuDR	DNA	30	tiny	525	high	6856434	chromoarm	979	no-CHH	no-CHH	.	.	.	.	.
Chr5	18080842	18081467	AT5TE65210	.	+	ATREP3	Helitron	RC	625	short	1439	high	6862440	chromoarm	1025	no-CHH	no-CHH	.	.	.	.	.
Chr5	18095395	18095526	AT5TE65260	.	-	ATLINEIII	L1	LINE	131	short	196	medium	6876993	chromoarm	268	no-CHH	no-CHH	.	.	.	.	.
Chr5	18099218	18099529	AT5TE65270	.	-	ATREP3	Helitron	RC	311	short	1439	high	6880816	chromoarm	598	no-CHH	no-CHH	.	.	.	.	.
Chr5	18099529	18104214	AT5TE65275	.	-	ATREP15	Helitron	RC	4685	medium	1003	high	6881127	chromoarm	0	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	18101898	18103153	AT5TE65280	.	-	ATREP10D	Helitron	RC	1255	short	1295	high	6883496	chromoarm	13	no-CHH	no-CHH	.	.	.	.	.
Chr5	18103153	18103865	AT5TE65285	.	+	ATHPOGON3	Pogo	DNA	712	short	118	medium	6884751	chromoarm	985	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	18104214	18104250	AT5TE65290	.	-	HELITRONY3	Helitron	RC	36	tiny	1399	high	6885812	chromoarm	600	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	18107180	18108051	AT5TE65300	.	+	ATREP19	.	DNA	871	short	189	medium	6888778	chromoarm	53	no-CHH	no-CHH	.	.	.	.	.
Chr5	18111802	18114302	AT5TE65310	.	+	ATREP10D	Helitron	RC	2500	medium	1295	high	6893400	chromoarm	149	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	18114302	18114445	AT5TE65315	.	-	ATREP10D	Helitron	RC	143	short	1295	high	6895900	chromoarm	220	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	18118595	18119467	AT5TE65325	.	-	VANDAL22	MuDR	DNA	872	short	48	low	6900193	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	18119470	18131741	AT5TE65330	.	+	VANDAL14	MuDR	DNA	12271	long	25	low	6901068	chromoarm	862	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	18131741	18132765	AT5TE65335	.	-	VANDAL22	MuDR	DNA	1024	short	48	low	6913339	chromoarm	379	no-RdDM	PolIV-RdDM	ExpressedAndAnnotated	18132487	18131794	-	transcript_id-"9aca523b-9d1f-4342-8658-9152257c4194|10"
Chr5	18132765	18133138	AT5TE65340	.	-	HELITRONY1A	Helitron	RC	373	short	271	high	6914363	chromoarm	6	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	18142155	18146898	AT5TE65370	.	-	ATCOPIA21	Copia	LTR	4743	medium	14	low	6923753	chromoarm	11	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	18147311	18148181	AT5TE65375	.	+	HELITRONY1B	Helitron	RC	870	short	414	high	6928909	chromoarm	1187	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	18148191	18148279	AT5TE65380	.	+	RathE2_cons	.	RathE2_cons	88	tiny	74	medium	6929789	chromoarm	1089	no-CHH	no-CHH	.	.	.	.	.
Chr5	18151251	18151414	AT5TE65390	.	-	ATTIRTA1	Tc1	DNA	163	short	95	medium	6932849	chromoarm	250	no-CHH	no-CHH	.	.	.	.	.
Chr5	18160352	18160556	AT5TE65420	.	+	ATCOPIA96	Copia	LTR	204	short	16	low	6941950	chromoarm	43	no-CHH	no-CHH	.	.	.	.	.
Chr5	18171286	18172315	AT5TE65460	.	+	VANDAL18NA	MuDR	DNA	1030	short	24	low	6952883	chromoarm	665	.	.	.	.	.	.	.
Chr5	18187393	18187755	AT5TE65520	.	-	ATMUNX1	MuDR	DNA	362	short	155	medium	6968991	chromoarm	143	no-CHH	no-CHH	.	.	.	.	.
Chr5	18190727	18190765	AT5TE65530	.	+	HELITRON2	Helitron	RC	38	tiny	194	medium	6972325	chromoarm	809	PolIV-RdDM	RDR6-RdDM	.	.	.	.	.
Chr5	18190765	18191551	AT5TE65535	.	+	ATREP3	Helitron	RC	786	short	1439	high	6972363	chromoarm	23	no-CHH	no-CHH	.	.	.	.	.
Chr5	18193409	18202051	AT5TE65540	.	-	ATENSPM5	En-Spm	DNA	8642	long	111	medium	6975007	chromoarm	202	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	18197096,18198291,18198864,18201587,18199867,18201587	18194033,18197514,18197584,18199285,18199656,18200320	-,-,-,-,-,-	transcript_id-"bd665512-2844-410c-bfeb-c5f4717a3b68|78",transcript_id-"870e925e-c8c6-4b78-aa95-5ac1f577bfac|7",transcript_id-"dded705b-4d8b-4156-95d9-d08f955a03af|3",transcript_id-"318654cb-bb8e-4219-9c76-132c048e9ecc|3",transcript_id-"c1da1b52-8dbd-404b-8308-6924f946e569|4",transcript_id-"5d365332-bbf3-484a-ac22-a76a471d2269|4"
Chr5	18204840	18205317	AT5TE65550	.	-	ATCOPIA35	Copia	LTR	477	short	22	low	6986438	chromoarm	0	no-CHH	RDR6-RdDM	.	.	.	.	.
Chr5	18205954	18206417	AT5TE65555	.	-	ATMUNX1	MuDR	DNA	463	short	155	medium	6987552	chromoarm	954	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	18206890	18207286	AT5TE65560	.	+	BRODYAGA1A	MuDR	DNA	396	short	586	high	6988488	chromoarm	554	no-CHH	no-CHH	.	.	.	.	.
Chr5	18209485	18211562	AT5TE65565	.	-	ATREP10D	Helitron	RC	2077	medium	1295	high	6991083	chromoarm	460	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	18216328	18216383	AT5TE65575	.	+	ATREP6	Helitron	RC	55	tiny	181	medium	6997926	chromoarm	2385	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	18216383	18216894	AT5TE65580	.	+	ATREP15	Helitron	RC	511	short	1003	high	6997981	chromoarm	1874	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	18216894	18218649	AT5TE65585	.	+	ATREP6	Helitron	RC	1755	short	181	medium	6998492	chromoarm	119	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	18233630	18238202	AT5TE65640	.	+	ATCOPIA23	Copia	LTR	4572	medium	8	low	7015228	chromoarm	109	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	18240258	18240886	AT5TE65645	.	+	HELITRONY1E	Helitron	RC	628	short	447	high	7021856	chromoarm	116	no-CHH	no-CHH	.	.	.	.	.
Chr5	18258405	18260234	AT5TE65710	.	-	ATLINE1_1	L1	LINE	1829	short	61	medium	7040003	chromoarm	206	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	18281916	18282046	AT5TE65790	.	+	BRODYAGA1A	MuDR	DNA	130	short	586	high	7063514	chromoarm	1183	no-CHH	no-CHH	.	.	.	.	.
Chr5	18282046	18282848	AT5TE65795	.	+	ATREP11	Helitron	RC	802	short	841	high	7063644	chromoarm	1118	no-CHH	no-CHH	.	.	.	.	.
Chr5	18282888	18283103	AT5TE65800	.	-	ATHATN5	HAT	DNA	215	short	42	low	7064486	chromoarm	863	no-CHH	no-CHH	.	.	.	.	.
Chr5	18283103	18283213	AT5TE65805	.	-	SIMPLEHAT1	HAT	DNA	110	short	56	medium	7064701	chromoarm	753	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	18287558	18288038	AT5TE65815	.	+	ATREP15	Helitron	RC	480	short	1003	high	7069156	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	18288038	18288934	AT5TE65820	.	-	ATREP3	Helitron	RC	896	short	1439	high	7069636	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	18301832	18302276	AT5TE65870	.	-	ATCOPIA45	Copia	LTR	444	short	20	low	7083430	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	18306020	18306151	AT5TE65880	.	+	ATREP16	MuDR	DNA	131	short	47	low	7087618	chromoarm	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	18306611	18306829	AT5TE65885	.	-	ATREP16	MuDR	DNA	218	short	47	low	7088209	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	18306829	18306962	AT5TE65890	.	-	ATREP16	MuDR	DNA	133	short	47	low	7088427	chromoarm	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	18306962	18307070	AT5TE65895	.	-	ATREP16	MuDR	DNA	108	short	47	low	7088560	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	18309191	18309324	AT5TE65900	.	-	ATHILA4C	Gypsy	LTR	133	short	206	high	7090789	chromoarm	888	no-CHH	no-CHH	.	.	.	.	.
Chr5	18309328	18310072	AT5TE65905	.	-	ATHILA4D_LTR	Gypsy	LTR	744	short	106	medium	7090926	chromoarm	1025	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	18311635	18311797	AT5TE65910	.	+	ATCOPIA68	Copia	LTR	162	short	43	low	7093233	chromoarm	1908	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	18312738	18313507	AT5TE65915	.	-	ATREP5	Helitron	RC	769	short	624	high	7094336	chromoarm	198	no-CHH	no-CHH	.	.	.	.	.
Chr5	18313514	18313618	AT5TE65920	.	+	ATREP10D	Helitron	RC	104	short	1295	high	7095112	chromoarm	87	no-CHH	no-CHH	.	.	.	.	.
Chr5	18313618	18313640	AT5TE65925	.	-	ATREP15	Helitron	RC	22	tiny	1003	high	7095216	chromoarm	65	no-CHH	no-RdDM	.	.	.	.	.
Chr5	18331003	18331279	AT5TE65980	.	-	ATMUNX1	MuDR	DNA	276	short	155	medium	7112601	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	18337681	18337706	AT5TE66000	.	-	ATREP10A	Helitron	RC	25	tiny	279	high	7119279	chromoarm	441	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	18337706	18337939	AT5TE66005	.	+	ATHATN5	HAT	DNA	233	short	42	low	7119304	chromoarm	466	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	18342157	18342224	AT5TE66015	.	-	HELITRONY3	Helitron	RC	67	tiny	1399	high	7123755	chromoarm	4637	no-CHH	no-CHH	.	.	.	.	.
Chr5	18342224	18344912	AT5TE66020	.	-	ATREP10D	Helitron	RC	2688	medium	1295	high	7123822	chromoarm	1949	no-CHH	no-CHH	.	.	.	.	.
Chr5	18357405	18357498	AT5TE66070	.	+	ATTIR16T3A	.	DNA	93	tiny	106	medium	7139003	chromoarm	709	no-CHH	no-RdDM	.	.	.	.	.
Chr5	18357498	18357731	AT5TE66075	.	-	ATLINE1_2	L1	LINE	233	short	41	low	7139096	chromoarm	802	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	18357755	18358309	AT5TE66080	.	-	ATTIR16T3A	.	DNA	554	short	106	medium	7139353	chromoarm	1059	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	18358309	18358635	AT5TE66085	.	+	HELITRONY1B	Helitron	RC	326	short	414	high	7139907	chromoarm	737	no-CHH	no-CHH	.	.	.	.	.
Chr5	18361905	18362021	AT5TE66095	.	+	HELITRON4	Helitron	RC	116	short	199	medium	7143503	chromoarm	332	no-CHH	no-CHH	.	.	.	.	.
Chr5	18362021	18362362	AT5TE66100	.	-	ATREP5	Helitron	RC	341	short	624	high	7143619	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	18371295	18371850	AT5TE66130	.	-	HELITRONY3	Helitron	RC	555	short	1399	high	7152893	chromoarm	386	no-CHH	no-CHH	.	.	.	.	.
Chr5	18378030	18378588	AT5TE66150	.	+	HELITRONY1D	Helitron	RC	558	short	756	high	7159628	chromoarm	3511	no-CHH	no-CHH	.	.	.	.	.
Chr5	18380738	18381017	AT5TE66155	.	-	DT1	Mariner	DNA	279	short	123	medium	7162336	chromoarm	1082	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	18381222	18381573	AT5TE66160	.	-	RathE2_cons	.	RathE2_cons	351	short	74	medium	7162820	chromoarm	526	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	18387152	18388051	AT5TE66180	.	-	HELITRON1	Helitron	RC	899	short	130	medium	7168750	chromoarm	359	no-CHH	no-CHH	ExpressedAndAnnotated	18387618	18387040	-	transcript_id-"76ebb81e-63dc-431c-9c30-efdf8966204f|3"
Chr5	18388051	18388076	AT5TE66185	.	-	HELITRON1	Helitron	RC	25	tiny	130	medium	7169649	chromoarm	334	no-CHH	no-CHH	.	.	.	.	.
Chr5	18405952	18406411	AT5TE66250	.	-	ATDNA1T9A	MuDR	DNA	459	short	36	low	7187550	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	18413670	18416199	AT5TE66280	.	+	AT9TSD1	MuDR	DNA	2529	medium	55	medium	7195268	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	18414149	18414202	AT5TE66285	.	+	ATREP4	Helitron	RC	53	tiny	832	high	7195747	chromoarm	683	no-CHH	no-CHH	.	.	.	.	.
Chr5	18420119	18420198	AT5TE66300	.	+	TAG2	HAT	DNA	79	tiny	86	medium	7201717	chromoarm	854	no-CHH	no-CHH	.	.	.	.	.
Chr5	18420198	18420745	AT5TE66305	.	+	ATHAT1	HAT	DNA	547	short	105	medium	7201796	chromoarm	933	no-CHH	no-RdDM	.	.	.	.	.
Chr5	18429629	18430774	AT5TE66330	.	+	HELITRONY3	Helitron	RC	1145	short	1399	high	7211227	chromoarm	289	no-CHH	no-CHH	.	.	.	.	.
Chr5	18430774	18430978	AT5TE66335	.	+	ATREP15	Helitron	RC	204	short	1003	high	7212372	chromoarm	85	no-CHH	no-CHH	.	.	.	.	.
Chr5	18435885	18437222	AT5TE66345	.	-	HELITRONY3	Helitron	RC	1337	short	1399	high	7217483	chromoarm	934	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	18439971	18440031	AT5TE66355	.	-	ATREP10B	Helitron	RC	60	tiny	491	high	7221569	chromoarm	4766	no-CHH	no-CHH	.	.	.	.	.
Chr5	18440031	18440776	AT5TE66360	.	-	ATREP1	Helitron	RC	745	short	498	high	7221629	chromoarm	4021	no-CHH	no-CHH	.	.	.	.	.
Chr5	18440776	18440841	AT5TE66365	.	-	HELITRONY1D	Helitron	RC	65	tiny	756	high	7222374	chromoarm	3956	no-CHH	no-CHH	.	.	.	.	.
Chr5	18440841	18441113	AT5TE66370	.	+	ATREP10D	Helitron	RC	272	short	1295	high	7222439	chromoarm	3684	no-CHH	no-CHH	.	.	.	.	.
Chr5	18441561	18441697	AT5TE66375	.	-	ATREP10B	Helitron	RC	136	short	491	high	7223159	chromoarm	3100	no-CHH	no-CHH	.	.	.	.	.
Chr5	18441697	18441809	AT5TE66380	.	+	HELITRONY3	Helitron	RC	112	short	1399	high	7223295	chromoarm	2988	no-CHH	no-CHH	.	.	.	.	.
Chr5	18441809	18441856	AT5TE66385	.	+	ATREP3	Helitron	RC	47	tiny	1439	high	7223407	chromoarm	2941	no-CHH	no-CHH	.	.	.	.	.
Chr5	18441856	18443069	AT5TE66390	.	+	ATREP5	Helitron	RC	1213	short	624	high	7223454	chromoarm	1728	no-CHH	no-CHH	.	.	.	.	.
Chr5	18443750	18443907	AT5TE66395	.	-	ATREP3	Helitron	RC	157	short	1439	high	7225348	chromoarm	890	no-CHH	no-CHH	.	.	.	.	.
Chr5	18443909	18444585	AT5TE66400	.	+	ATREP5	Helitron	RC	676	short	624	high	7225507	chromoarm	212	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	18450187	18450513	AT5TE66420	.	+	VANDAL17	MuDR	DNA	326	short	178	medium	7231785	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	18450741	18451048	AT5TE66425	.	+	ATENSPM5	En-Spm	DNA	307	short	111	medium	7232339	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	18451048	18451225	AT5TE66430	.	+	ATENSPM6	En-Spm	DNA	177	short	151	medium	7232646	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	18456408	18456671	AT5TE66440	.	-	ATENSPM3	En-Spm	DNA	263	short	98	medium	7238006	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	18470924	18471148	AT5TE66490	.	-	ATDNA2T9C	MuDR	DNA	224	short	242	high	7252522	chromoarm	172	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	18472427	18473020	AT5TE66495	.	-	VANDAL3	MuDR	DNA	593	short	177	medium	7254025	chromoarm	0	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	18471180	18475677	+	transcript_id-"3ddace14-2cd2-4d64-a06e-79253c160c93|11"
Chr5	18475043	18479084	AT5TE66500	.	-	VANDAL3	MuDR	DNA	4041	medium	177	medium	7256641	chromoarm	0	no-RdDM	RDR6-RdDM	ExpressedAndAnnotated	18471180	18475677	+	transcript_id-"3ddace14-2cd2-4d64-a06e-79253c160c93|11"
Chr5	18475607	18476060	AT5TE66505	.	+	VANDAL6	MuDR	DNA	453	short	89	medium	7257205	chromoarm	0	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	18476060	18476106	AT5TE66510	.	-	TAT1_ATH	Gypsy	LTR	46	tiny	87	medium	7257658	chromoarm	0	no-RdDM	no-CHH	.	.	.	.	.
Chr5	18476379	18476745	AT5TE66515	.	-	TAT1_ATH	Gypsy	LTR	366	short	87	medium	7257977	chromoarm	0	no-RdDM	RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	18479639	18479718	AT5TE66525	.	-	VANDALNX2	MuDR	DNA	79	tiny	37	low	7261237	chromoarm	1373	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	18479718	18480732	AT5TE66530	.	-	VANDALNX2	MuDR	DNA	1014	short	37	low	7261316	chromoarm	359	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	18480732	18480941	AT5TE66535	.	-	ATDNA2T9A	MuDR	DNA	209	short	48	low	7262330	chromoarm	150	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	18486451	18487498	AT5TE66550	.	-	ATLINE2	L1	LINE	1047	short	138	medium	7268049	chromoarm	224	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	18487634	18487737	AT5TE66555	.	+	ATMU2	MuDR	DNA	103	short	64	medium	7269232	chromoarm	321	no-CHH	no-CHH	.	.	.	.	.
Chr5	18490605	18495234	AT5TE66565	.	-	ATCOPIA31	Copia	LTR	4629	medium	8	low	7272203	chromoarm	939	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	18499817	18500521	AT5TE66575	.	-	ATREP1	Helitron	RC	704	short	498	high	7281415	chromoarm	144	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	18500732	18501486	AT5TE66580	.	-	TAG3N1	HAT	DNA	754	short	97	medium	7282330	chromoarm	103	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	18512279	18512874	AT5TE66620	.	-	ATMU7	MuDR	DNA	595	short	32	low	7293877	chromoarm	645	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	18519136	18519585	AT5TE66640	.	-	ATDNA12T3_2	.	DNA	449	short	660	high	7300734	chromoarm	346	no-CHH	no-CHH	.	.	.	.	.
Chr5	18520250	18520752	AT5TE66645	.	+	HELITRONY1D	Helitron	RC	502	short	756	high	7301848	chromoarm	1460	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	18520753	18520827	AT5TE66650	.	+	HELITRONY1D	Helitron	RC	75	tiny	756	high	7302350	chromoarm	1962	.	.	.	.	.	.	.
Chr5	18522510	18522844	AT5TE66655	.	-	BRODYAGA1A	MuDR	DNA	334	short	586	high	7304108	chromoarm	2258	no-CHH	no-CHH	.	.	.	.	.
Chr5	18538549	18538975	AT5TE66710	.	-	ATREP10B	Helitron	RC	426	short	491	high	7320147	chromoarm	353	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	18538975	18539699	AT5TE66715	.	+	ATHPOGON1	Pogo	DNA	724	short	174	medium	7320573	chromoarm	779	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	18539700	18539948	AT5TE66720	.	+	ARNOLDY2	MuDR	DNA	249	short	288	high	7321297	chromoarm	1503	.	.	.	.	.	.	.
Chr5	18539949	18539975	AT5TE66725	.	-	HELITRONY3	Helitron	RC	27	tiny	1399	high	7321546	chromoarm	1600	.	.	.	.	.	.	.
Chr5	18548150	18548447	AT5TE66750	.	+	ATDNA2T9C	MuDR	DNA	297	short	242	high	7329748	chromoarm	1521	no-CHH	no-CHH	.	.	.	.	.
Chr5	18548447	18548611	AT5TE66755	.	-	ATLINE1_3A	L1	LINE	164	short	160	medium	7330045	chromoarm	1818	no-CHH	no-CHH	.	.	.	.	.
Chr5	18549789	18550278	AT5TE66760	.	+	HELITRONY1A	Helitron	RC	489	short	271	high	7331387	chromoarm	1697	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	18554055	18554307	AT5TE66770	.	-	BRODYAGA1A	MuDR	DNA	252	short	586	high	7335653	chromoarm	397	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	18554307	18554857	AT5TE66775	.	+	ATREP10	Helitron	RC	550	short	63	medium	7335905	chromoarm	649	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	18554859	18554897	AT5TE66780	.	+	ATREP9	Helitron	RC	38	tiny	201	high	7336457	chromoarm	1201	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	18554897	18555937	AT5TE66785	.	+	ATREP9	Helitron	RC	1040	short	201	high	7336495	chromoarm	1037	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	18555937	18556462	AT5TE66790	.	+	ATREP10	Helitron	RC	525	short	63	medium	7337535	chromoarm	512	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	18571412	18571838	AT5TE66850	.	+	ATREP5	Helitron	RC	426	short	624	high	7353010	chromoarm	506	no-CHH	no-CHH	.	.	.	.	.
Chr5	18579178	18579599	AT5TE66880	.	-	BRODYAGA1A	MuDR	DNA	421	short	586	high	7360776	chromoarm	206	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	18589770	18590208	AT5TE66920	.	+	BRODYAGA1A	MuDR	DNA	438	short	586	high	7371368	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	18598161	18599806	AT5TE66950	.	-	ATREP9	Helitron	RC	1645	short	201	high	7379759	chromoarm	191	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	18599806	18599835	AT5TE66955	.	+	ATREP3	Helitron	RC	29	tiny	1439	high	7381404	chromoarm	162	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	18602043	18602864	AT5TE66960	.	-	ATREP1	Helitron	RC	821	short	498	high	7383641	chromoarm	608	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	18602864	18603211	AT5TE66965	.	-	ATLINE1_6	L1	LINE	347	short	129	medium	7384462	chromoarm	889	no-CHH	no-CHH	.	.	.	.	.
Chr5	18612769	18613039	AT5TE67000	.	+	BRODYAGA1A	MuDR	DNA	270	short	586	high	7394367	chromoarm	260	no-CHH	no-CHH	.	.	.	.	.
Chr5	18623331	18624037	AT5TE67040	.	+	BRODYAGA2	MuDR	DNA	706	short	525	high	7404929	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	18624756	18625088	AT5TE67045	.	+	ATDNAI27T9A	MuDR	DNA	332	short	116	medium	7406354	chromoarm	79	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	18626123	18626511	AT5TE67050	.	+	ATDNAI27T9C	MuDR	DNA	388	short	108	medium	7407721	chromoarm	1446	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	18626589	18626633	AT5TE67055	.	-	ATDNAI26T9	MuDR	DNA	45	tiny	25	low	7408186	chromoarm	1461	.	.	.	.	.	.	.
Chr5	18627522	18627701	AT5TE67060	.	+	ATDNAI27T9B	MuDR	DNA	179	short	43	low	7409120	chromoarm	393	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	18636512	18637021	AT5TE67090	.	+	ATREP11	Helitron	RC	509	short	841	high	7418110	chromoarm	0	PolIV-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	18635600	18636605	+	transcript_id-"01997bfe-e59e-44b9-b553-c93946656ff6|3"
Chr5	18645511	18645607	AT5TE67120	.	+	ATCOPIA28	Copia	LTR	96	tiny	81	medium	7427109	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	18645856	18646167	AT5TE67125	.	-	SIMPLEHAT2	HAT	DNA	311	short	73	medium	7427454	chromoarm	98	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	18649808	18649888	AT5TE67135	.	-	ATREP10B	Helitron	RC	80	tiny	491	high	7431406	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	18649888	18650368	AT5TE67140	.	-	BRODYAGA1A	MuDR	DNA	480	short	586	high	7431486	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	18666050	18666951	AT5TE67200	.	-	ATREP15	Helitron	RC	901	short	1003	high	7447648	chromoarm	454	no-CHH	no-CHH	.	.	.	.	.
Chr5	18666951	18667305	AT5TE67205	.	+	ATREP10B	Helitron	RC	354	short	491	high	7448549	chromoarm	1355	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	18667375	18668960	AT5TE67210	.	+	LIMPET1	MuDR	DNA	1585	short	116	medium	7448973	chromoarm	1570	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	18669043	18669971	AT5TE67215	.	+	ATDNAI27T9A	MuDR	DNA	928	short	116	medium	7450641	chromoarm	559	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	18690734	18691659	AT5TE67290	.	+	ATREP10D	Helitron	RC	925	short	1295	high	7472332	chromoarm	13	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	18700637	18700754	AT5TE67320	.	-	ATLINE1_3A	L1	LINE	117	short	160	medium	7482235	chromoarm	414	no-CHH	no-CHH	.	.	.	.	.
Chr5	18702033	18702503	AT5TE67325	.	-	ATREP15	Helitron	RC	470	short	1003	high	7483631	chromoarm	324	no-CHH	no-CHH	.	.	.	.	.
Chr5	18702503	18702814	AT5TE67330	.	-	ATLINE1_3A	L1	LINE	311	short	160	medium	7484101	chromoarm	243	no-CHH	no-CHH	.	.	.	.	.
Chr5	18712818	18713025	AT5TE67370	.	+	ATMUNX1	MuDR	DNA	207	short	155	medium	7494416	chromoarm	477	no-CHH	no-CHH	.	.	.	.	.
Chr5	18726868	18727321	AT5TE67420	.	+	TAG2	HAT	DNA	453	short	86	medium	7508466	chromoarm	728	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	18727567	18728044	AT5TE67425	.	+	BRODYAGA1A	MuDR	DNA	477	short	586	high	7509165	chromoarm	5	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	18729412	18729670	AT5TE67430	.	+	BRODYAGA1A	MuDR	DNA	258	short	586	high	7511010	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	18736793	18737332	AT5TE67460	.	-	HELITRONY1D	Helitron	RC	539	short	756	high	7518391	chromoarm	140	no-CHH	no-CHH	.	.	.	.	.
Chr5	18751144	18751543	AT5TE67510	.	+	HELITRONY3	Helitron	RC	399	short	1399	high	7532742	chromoarm	3844	no-CHH	no-CHH	.	.	.	.	.
Chr5	18781874	18782168	AT5TE67620	.	+	ATDNA2T9C	MuDR	DNA	294	short	242	high	7563472	chromoarm	1495	no-CHH	no-CHH	.	.	.	.	.
Chr5	18789040	18790184	AT5TE67650	.	-	ATREP10D	Helitron	RC	1144	short	1295	high	7570638	chromoarm	152	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	18800467	18800504	AT5TE67690	.	-	HELITRON2	Helitron	RC	37	tiny	194	medium	7582065	chromoarm	742	no-CHH	no-CHH	.	.	.	.	.
Chr5	18800504	18800735	AT5TE67695	.	-	HELITRONY2	Helitron	RC	231	short	198	medium	7582102	chromoarm	667	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	18802854	18803387	AT5TE67700	.	+	ATREP15	Helitron	RC	533	short	1003	high	7584452	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	18803866	18804028	AT5TE67705	.	-	ATDNAI27T9A	MuDR	DNA	162	short	116	medium	7585464	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	18807295	18807366	AT5TE67715	.	+	ATENSPM3	En-Spm	DNA	72	tiny	98	medium	7588892	chromoarm	0	.	.	.	.	.	.	.
Chr5	18853599	18853838	AT5TE67880	.	+	ATREP5	Helitron	RC	239	short	624	high	7635197	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	18853838	18856404	AT5TE67885	.	+	ATREP3	Helitron	RC	2566	medium	1439	high	7635436	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	18856404	18856424	AT5TE67890	.	-	HELITRONY3	Helitron	RC	20	tiny	1399	high	7638002	chromoarm	29	no-CHH	no-CHH	.	.	.	.	.
Chr5	18858674	18858763	AT5TE67895	.	+	ATHILA3	Gypsy	LTR	89	tiny	243	high	7640272	chromoarm	887	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	18858764	18859248	AT5TE67900	.	+	ATHILA4C	Gypsy	LTR	485	short	206	high	7640361	chromoarm	976	.	.	.	.	.	.	.
Chr5	18874416	18874580	AT5TE67960	.	-	ATREP5	Helitron	RC	164	short	624	high	7656014	chromoarm	995	no-CHH	no-CHH	.	.	.	.	.
Chr5	18882294	18882379	AT5TE67990	.	-	HELITRONY3	Helitron	RC	85	tiny	1399	high	7663892	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	18882379	18884442	AT5TE67995	.	+	HELITRONY3	Helitron	RC	2063	medium	1399	high	7663977	chromoarm	0	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	18893602	18894311	AT5TE68020	.	-	HELITRONY1B	Helitron	RC	709	short	414	high	7675200	chromoarm	375	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	18900661	18900819	AT5TE68040	.	+	ATCOPIA68	Copia	LTR	158	short	43	low	7682259	chromoarm	1016	no-CHH	no-CHH	.	.	.	.	.
Chr5	18916913	18917520	AT5TE68100	.	+	ATREP10B	Helitron	RC	607	short	491	high	7698511	chromoarm	329	no-CHH	no-CHH	.	.	.	.	.
Chr5	18919593	18920301	AT5TE68105	.	+	ATREP13	Helitron	RC	708	short	106	medium	7701191	chromoarm	278	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	18928065	18929471	AT5TE68130	.	-	TA11	L1	LINE	1406	short	157	medium	7709663	chromoarm	971	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	18933095	18938943	AT5TE68140	.	-	ATCOPIA58	Copia	LTR	5848	long	18	low	7714693	chromoarm	0	no-RdDM	no-RdDM	ExpressedAndAnnotated	18934284,18934286	18933124,18933748	-,-	transcript_id-"2bebbd53-e595-4b87-b4bb-83667d0b12e5|17",transcript_id-"f3ea85c4-f77c-443d-ace9-592fac785b33|4"
Chr5	18945987	18946299	AT5TE68170	.	+	ATDNA2T9C	MuDR	DNA	312	short	242	high	7727585	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	18954803	18955182	AT5TE68200	.	+	HELITRONY3	Helitron	RC	379	short	1399	high	7736401	chromoarm	319	no-CHH	no-CHH	.	.	.	.	.
Chr5	18955405	18955589	AT5TE68205	.	+	ATLINEIII	L1	LINE	184	short	196	medium	7737003	chromoarm	921	no-CHH	no-CHH	.	.	.	.	.
Chr5	18955659	18956836	AT5TE68210	.	-	ATREP15	Helitron	RC	1177	short	1003	high	7737257	chromoarm	1175	no-CHH	no-CHH	.	.	.	.	.
Chr5	18961391	18961609	AT5TE68220	.	-	ATLINE1A	L1	LINE	218	short	289	high	7742989	chromoarm	1681	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	18964434	18964982	AT5TE68230	.	-	VANDAL17	MuDR	DNA	548	short	178	medium	7746032	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	18968890	18969759	AT5TE68240	.	-	HELITRONY1D	Helitron	RC	869	short	756	high	7750488	chromoarm	190	no-CHH	no-CHH	.	.	.	.	.
Chr5	18969759	18969911	AT5TE68245	.	-	ATREP3	Helitron	RC	152	short	1439	high	7751357	chromoarm	38	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	18973311	18974066	AT5TE68255	.	+	ATREP4	Helitron	RC	755	short	832	high	7754909	chromoarm	164	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	18980149	18980357	AT5TE68270	.	+	BRODYAGA2	MuDR	DNA	208	short	525	high	7761747	chromoarm	200	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	18980403	18981279	AT5TE68275	.	+	BRODYAGA2	MuDR	DNA	876	short	525	high	7762001	chromoarm	454	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	18981023	18981056	AT5TE68280	.	-	BRODYAGA2	MuDR	DNA	33	tiny	525	high	7762621	chromoarm	1074	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	18981279	18981489	AT5TE68285	.	-	BRODYAGA2	MuDR	DNA	210	short	525	high	7762877	chromoarm	1330	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	18984799	18985616	AT5TE68295	.	-	HELITRONY1E	Helitron	RC	817	short	447	high	7766397	chromoarm	71	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	18985891	18986476	AT5TE68300	.	-	BRODYAGA2	MuDR	DNA	585	short	525	high	7767489	chromoarm	578	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr5	18993873	18994318	AT5TE68330	.	-	ATDNA2T9C	MuDR	DNA	445	short	242	high	7775471	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	19004576	19004886	AT5TE68370	.	-	ATMUN1	MuDR	DNA	310	short	107	medium	7786174	chromoarm	322	no-CHH	no-CHH	.	.	.	.	.
Chr5	19005810	19006110	AT5TE68375	.	-	ATENSPM1A	En-Spm	DNA	300	short	77	medium	7787408	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	19018602	19019752	AT5TE68420	.	-	ATREP6	Helitron	RC	1150	short	181	medium	7800200	chromoarm	159	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	19020051	19020346	AT5TE68425	.	-	BRODYAGA1	MuDR	DNA	295	short	251	high	7801649	chromoarm	858	no-CHH	no-CHH	.	.	.	.	.
Chr5	19020346	19020491	AT5TE68430	.	+	ATENSPM2	En-Spm	DNA	145	short	114	medium	7801944	chromoarm	713	no-CHH	no-CHH	.	.	.	.	.
Chr5	19020505	19020964	AT5TE68435	.	+	BRODYAGA1A	MuDR	DNA	459	short	586	high	7802103	chromoarm	240	no-CHH	no-CHH	.	.	.	.	.
Chr5	19023491	19024141	AT5TE68440	.	+	ATREP3	Helitron	RC	650	short	1439	high	7805089	chromoarm	792	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	19024211	19025157	AT5TE68445	.	+	ATLINE1_1	L1	LINE	946	short	61	medium	7805809	chromoarm	737	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	19026400	19027770	AT5TE68450	.	-	ATREP16	MuDR	DNA	1370	short	47	low	7807998	chromoarm	131	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	19028038	19028236	AT5TE68455	.	-	ATLINE1_5	L1	LINE	198	short	91	medium	7809636	chromoarm	1769	no-CHH	no-CHH	.	.	.	.	.
Chr5	19029930	19030520	AT5TE68460	.	-	ATREP3	Helitron	RC	590	short	1439	high	7811528	chromoarm	1019	no-CHH	no-CHH	.	.	.	.	.
Chr5	19037051	19037949	AT5TE68480	.	+	ATREP15	Helitron	RC	898	short	1003	high	7818649	chromoarm	231	no-CHH	no-CHH	.	.	.	.	.
Chr5	19042798	19042967	AT5TE68490	.	-	RathE1_cons	.	RathE1_cons	169	short	213	high	7824396	chromoarm	2461	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	19044460	19045245	AT5TE68495	.	-	BRODYAGA2	MuDR	DNA	785	short	525	high	7826058	chromoarm	1642	no-CHH	no-CHH	.	.	.	.	.
Chr5	19055950	19056041	AT5TE68530	.	+	ATDNA2T9C	MuDR	DNA	91	tiny	242	high	7837548	chromoarm	75	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr5	19056041	19056552	AT5TE68535	.	-	ATHPOGON1	Pogo	DNA	511	short	174	medium	7837639	chromoarm	102	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	19056552	19056741	AT5TE68540	.	-	ATREP11	Helitron	RC	189	short	841	high	7838150	chromoarm	0	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	19057574	19057804	AT5TE68545	.	+	ATDNA12T3_2	.	DNA	230	short	660	high	7839172	chromoarm	383	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	19062836	19063462	AT5TE68555	.	-	HELITRONY1D	Helitron	RC	626	short	756	high	7844434	chromoarm	92	no-CHH	no-RdDM	.	.	.	.	.
Chr5	19070583	19071741	AT5TE68580	.	-	ATREP4	Helitron	RC	1158	short	832	high	7852181	chromoarm	267	no-CHH	no-CHH	.	.	.	.	.
Chr5	19080309	19080405	AT5TE68610	.	+	HELITRONY1B	Helitron	RC	96	tiny	414	high	7861907	chromoarm	1453	no-CHH	no-CHH	.	.	.	.	.
Chr5	19080405	19080535	AT5TE68615	.	+	ATREP10A	Helitron	RC	130	short	279	high	7862003	chromoarm	1469	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	19080535	19081429	AT5TE68620	.	+	ATREP10	Helitron	RC	894	short	63	medium	7862133	chromoarm	575	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	19098737	19098770	AT5TE68680	.	-	ATREP10C	Helitron	RC	33	tiny	123	medium	7880335	chromoarm	59	no-CHH	no-CHH	.	.	.	.	.
Chr5	19098770	19098797	AT5TE68685	.	-	HELITRONY1E	Helitron	RC	27	tiny	447	high	7880368	chromoarm	92	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	19098797	19099534	AT5TE68690	.	+	ATREP9	Helitron	RC	737	short	201	high	7880395	chromoarm	119	no-CHH	no-CHH	.	.	.	.	.
Chr5	19101559	19102178	AT5TE68695	.	+	ATREP2	Helitron	RC	619	short	164	medium	7883157	chromoarm	2881	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	19105679	19106154	AT5TE68705	.	-	BRODYAGA1A	MuDR	DNA	475	short	586	high	7887277	chromoarm	457	no-CHH	no-CHH	.	.	.	.	.
Chr5	19112496	19112561	AT5TE68720	.	-	ATREP5	Helitron	RC	65	tiny	624	high	7894094	chromoarm	4281	no-CHH	no-CHH	.	.	.	.	.
Chr5	19112571	19113254	AT5TE68725	.	-	ATREP4	Helitron	RC	683	short	832	high	7894169	chromoarm	3588	no-CHH	no-CHH	.	.	.	.	.
Chr5	19113254	19114309	AT5TE68730	.	-	ATREP9	Helitron	RC	1055	short	201	high	7894852	chromoarm	2533	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	19114309	19115133	AT5TE68735	.	-	ATREP2A	Helitron	RC	824	short	116	medium	7895907	chromoarm	1709	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	19115142	19115243	AT5TE68740	.	-	ATREP1	Helitron	RC	101	short	498	high	7896740	chromoarm	1599	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	19115939	19116484	AT5TE68745	.	-	ATREP11	Helitron	RC	545	short	841	high	7897537	chromoarm	358	no-CHH	no-CHH	.	.	.	.	.
Chr5	19120995	19121061	AT5TE68755	.	-	ATREP4	Helitron	RC	66	tiny	832	high	7902593	chromoarm	467	no-CHH	no-CHH	.	.	.	.	.
Chr5	19121061	19121866	AT5TE68760	.	+	ATREP9	Helitron	RC	805	short	201	high	7902659	chromoarm	533	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr5	19121866	19121888	AT5TE68765	.	-	HELITRONY1E	Helitron	RC	22	tiny	447	high	7903464	chromoarm	614	DCL3-RdDM	no-RdDM	.	.	.	.	.
Chr5	19122160	19122483	AT5TE68770	.	-	ATREP11	Helitron	RC	323	short	841	high	7903758	chromoarm	19	no-CHH	no-CHH	.	.	.	.	.
Chr5	19122834	19123012	AT5TE68775	.	+	BRODYAGA1A	MuDR	DNA	178	short	586	high	7904432	chromoarm	8	no-CHH	no-CHH	.	.	.	.	.
Chr5	19123012	19123490	AT5TE68780	.	-	ATREP10D	Helitron	RC	478	short	1295	high	7904610	chromoarm	15	no-CHH	no-CHH	.	.	.	.	.
Chr5	19139201	19139227	AT5TE68840	.	-	ATREP11	Helitron	RC	26	tiny	841	high	7920799	chromoarm	1616	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	19139227	19139260	AT5TE68845	.	-	ATTIR16T3A	.	DNA	33	tiny	106	medium	7920825	chromoarm	1642	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	19139260	19139732	AT5TE68850	.	-	ATTIR16T3A	.	DNA	472	short	106	medium	7920858	chromoarm	1283	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	19139732	19140154	AT5TE68855	.	+	ATREP4	Helitron	RC	422	short	832	high	7921330	chromoarm	861	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	19147369	19147458	AT5TE68880	.	+	ATREP15	Helitron	RC	89	tiny	1003	high	7928967	chromoarm	66	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	19147458	19148513	AT5TE68885	.	-	HELITRONY1E	Helitron	RC	1055	short	447	high	7929056	chromoarm	155	no-CHH	no-CHH	.	.	.	.	.
Chr5	19148513	19148722	AT5TE68890	.	-	ATREP10D	Helitron	RC	209	short	1295	high	7930111	chromoarm	1210	no-CHH	no-CHH	.	.	.	.	.
Chr5	19151810	19151914	AT5TE68900	.	+	ATREP11	Helitron	RC	104	short	841	high	7933408	chromoarm	17	no-CHH	no-CHH	.	.	.	.	.
Chr5	19151914	19152350	AT5TE68905	.	-	ATREP3	Helitron	RC	436	short	1439	high	7933512	chromoarm	121	no-CHH	no-CHH	.	.	.	.	.
Chr5	19152350	19152390	AT5TE68910	.	-	HELITRONY1E	Helitron	RC	40	tiny	447	high	7933948	chromoarm	557	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr5	19152390	19153744	AT5TE68915	.	-	HELITRONY1E	Helitron	RC	1354	short	447	high	7933988	chromoarm	597	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	19153744	19153813	AT5TE68920	.	-	ATREP15	Helitron	RC	69	tiny	1003	high	7935342	chromoarm	1951	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	19153813	19155394	AT5TE68925	.	+	ATREP10D	Helitron	RC	1581	short	1295	high	7935411	chromoarm	1336	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	19155394	19155420	AT5TE68930	.	+	ATREP6	Helitron	RC	26	tiny	181	medium	7936992	chromoarm	1310	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	19160260	19160781	AT5TE68940	.	-	BRODYAGA1A	MuDR	DNA	521	short	586	high	7941858	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	19174543	19175868	AT5TE68990	.	+	ATLINE1_4	L1	LINE	1325	short	102	medium	7956141	chromoarm	1789	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	19178998	19179253	AT5TE69000	.	+	HELITRON2	Helitron	RC	255	short	194	medium	7960596	chromoarm	440	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	19192492	19192814	AT5TE69050	.	+	HELITRONY1D	Helitron	RC	322	short	756	high	7974090	chromoarm	0	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	19197545	19197700	AT5TE69060	.	-	ATCOPIA1	Copia	LTR	155	short	11	low	7979143	chromoarm	114	no-CHH	no-CHH	.	.	.	.	.
Chr5	19200595	19200733	AT5TE69070	.	+	ATREP5	Helitron	RC	138	short	624	high	7982193	chromoarm	220	no-RdDM	no-CHH	.	.	.	.	.
Chr5	19205610	19206076	AT5TE69080	.	-	ATREP10D	Helitron	RC	466	short	1295	high	7987208	chromoarm	659	no-CHH	no-CHH	.	.	.	.	.
Chr5	19206076	19206182	AT5TE69085	.	+	ATTIRX1A	.	DNA	106	short	63	medium	7987674	chromoarm	987	no-CHH	no-CHH	.	.	.	.	.
Chr5	19206182	19206237	AT5TE69090	.	-	ATTIRX1A	.	DNA	55	tiny	63	medium	7987780	chromoarm	932	no-CHH	no-CHH	.	.	.	.	.
Chr5	19246339	19246542	AT5TE69240	.	-	ATCOPIA62	Copia	LTR	203	short	16	low	8027937	chromoarm	1135	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	19246558	19248022	AT5TE69245	.	-	ATCOPIA61	Copia	LTR	1464	short	12	low	8028156	chromoarm	486	no-CHH	no-CHH	ExpressedAndAnnotated	19247917	19246336	-	transcript_id-"87a95404-217f-403d-89a1-38f9745a4334|10"
Chr5	19248022	19248046	AT5TE69250	.	-	ATCOPIA62	Copia	LTR	24	tiny	16	low	8029620	chromoarm	462	no-CHH	no-CHH	.	.	.	.	.
Chr5	19250391	19250461	AT5TE69255	.	-	ATDNA12T3_2	.	DNA	70	tiny	660	high	8031989	chromoarm	343	no-CHH	no-CHH	.	.	.	.	.
Chr5	19273757	19273983	AT5TE69340	.	-	ATREP15	Helitron	RC	226	short	1003	high	8055355	chromoarm	912	no-CHH	no-CHH	.	.	.	.	.
Chr5	19273983	19274685	AT5TE69345	.	-	ATREP5	Helitron	RC	702	short	624	high	8055581	chromoarm	362	no-CHH	no-CHH	.	.	.	.	.
Chr5	19274685	19274723	AT5TE69350	.	-	ATREP15	Helitron	RC	38	tiny	1003	high	8056283	chromoarm	324	no-CHH	no-CHH	.	.	.	.	.
Chr5	19329080	19329193	AT5TE69550	.	+	BOMZH1	MuDR	DNA	113	short	28	low	8110678	chromoarm	356	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	19337169	19337199	AT5TE69580	.	+	ARNOLDY2	MuDR	DNA	30	tiny	288	high	8118767	chromoarm	551	no-CHH	no-CHH	.	.	.	.	.
Chr5	19337199	19337701	AT5TE69585	.	+	ATTIR16T3A	.	DNA	502	short	106	medium	8118797	chromoarm	581	no-CHH	no-CHH	.	.	.	.	.
Chr5	19353829	19353983	AT5TE69640	.	-	VANDAL6	MuDR	DNA	154	short	89	medium	8135427	chromoarm	187	no-CHH	no-CHH	.	.	.	.	.
Chr5	19358617	19363928	AT5TE69650	.	+	Unassigned	.	Unassigned	5311	long	.	low	8140215	chromoarm	628	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	19365286	19365663	AT5TE69655	.	+	ATREP5	Helitron	RC	377	short	624	high	8146884	chromoarm	841	no-CHH	no-CHH	.	.	.	.	.
Chr5	19365663	19366022	AT5TE69660	.	+	ATTIRX1A	.	DNA	359	short	63	medium	8147261	chromoarm	482	no-CHH	no-CHH	.	.	.	.	.
Chr5	19366022	19366054	AT5TE69665	.	-	ARNOLDY2	MuDR	DNA	32	tiny	288	high	8147620	chromoarm	450	no-CHH	no-CHH	.	.	.	.	.
Chr5	19374989	19375360	AT5TE69690	.	+	HARBINGER	Harbinger	DNA	371	short	90	medium	8156587	chromoarm	127	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	19390801	19390833	AT5TE69750	.	+	VANDAL8	MuDR	DNA	32	tiny	123	medium	8172399	chromoarm	392	no-CHH	no-CHH	.	.	.	.	.
Chr5	19390833	19391875	AT5TE69755	.	+	ATREP19	.	DNA	1042	short	189	medium	8172431	chromoarm	424	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	19391875	19392124	AT5TE69760	.	+	HELITRONY1D	Helitron	RC	249	short	756	high	8173473	chromoarm	283	no-CHH	no-CHH	.	.	.	.	.
Chr5	19395605	19396597	AT5TE69770	.	-	ATREP15	Helitron	RC	992	short	1003	high	8177203	chromoarm	642	no-CHH	no-CHH	.	.	.	.	.
Chr5	19408011	19408038	AT5TE69810	.	-	HELITRON5	Helitron	RC	27	tiny	56	medium	8189609	chromoarm	682	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	19408038	19408353	AT5TE69815	.	-	ATREP4	Helitron	RC	315	short	832	high	8189636	chromoarm	709	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	19408353	19409355	AT5TE69820	.	-	ATREP1	Helitron	RC	1002	short	498	high	8189951	chromoarm	51	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	19409355	19409401	AT5TE69825	.	+	ATREP3	Helitron	RC	46	tiny	1439	high	8190953	chromoarm	5	no-CHH	no-CHH	.	.	.	.	.
Chr5	19412252	19412509	AT5TE69835	.	-	ATTIRTA1	Tc1	DNA	257	short	95	medium	8193850	chromoarm	359	no-CHH	no-CHH	.	.	.	.	.
Chr5	19412729	19413647	AT5TE69840	.	+	ATREP11A	Helitron	RC	918	short	95	medium	8194327	chromoarm	836	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	19414871	19414892	AT5TE69845	.	-	HELITRONY3	Helitron	RC	21	tiny	1399	high	8196469	chromoarm	2325	no-CHH	no-CHH	.	.	.	.	.
Chr5	19414892	19414977	AT5TE69850	.	+	ARNOLD2	MuDR	DNA	85	tiny	68	medium	8196490	chromoarm	2240	no-CHH	no-RdDM	.	.	.	.	.
Chr5	19414977	19416103	AT5TE69855	.	-	ARNOLDY2	MuDR	DNA	1126	short	288	high	8196575	chromoarm	1114	no-CHH	no-CHH	.	.	.	.	.
Chr5	19416103	19416740	AT5TE69860	.	+	ATREP4	Helitron	RC	637	short	832	high	8197701	chromoarm	477	no-CHH	no-CHH	.	.	.	.	.
Chr5	19416740	19416761	AT5TE69865	.	+	HELITRONY3	Helitron	RC	21	tiny	1399	high	8198338	chromoarm	456	no-CHH	no-CHH	.	.	.	.	.
Chr5	19418595	19420939	AT5TE69870	.	+	ATREP5	Helitron	RC	2344	medium	624	high	8200193	chromoarm	97	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	19420939	19421011	AT5TE69875	.	-	BRODYAGA1A	MuDR	DNA	72	tiny	586	high	8202537	chromoarm	521	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	19421011	19421307	AT5TE69880	.	-	ATREP8	Helitron	RC	296	short	75	medium	8202609	chromoarm	225	no-CHH	no-CHH	.	.	.	.	.
Chr5	19425675	19425811	AT5TE69890	.	-	ATCOPIA69	Copia	LTR	136	short	25	low	8207273	chromoarm	90	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	19425889	19427193	AT5TE69895	.	-	HELITRONY3	Helitron	RC	1304	short	1399	high	8207487	chromoarm	304	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	19427259	19427610	AT5TE69900	.	-	ATLINE1A	L1	LINE	351	short	289	high	8208857	chromoarm	1359	no-CHH	no-CHH	.	.	.	.	.
Chr5	19431060	19431542	AT5TE69910	.	+	HELITRON2	Helitron	RC	482	short	194	medium	8212658	chromoarm	759	no-CHH	no-CHH	.	.	.	.	.
Chr5	19433650	19433747	AT5TE69915	.	+	ATREP4	Helitron	RC	97	tiny	832	high	8215248	chromoarm	1079	no-CHH	no-CHH	.	.	.	.	.
Chr5	19433747	19434734	AT5TE69920	.	-	ATREP4	Helitron	RC	987	short	832	high	8215345	chromoarm	92	no-CHH	no-CHH	.	.	.	.	.
Chr5	19437283	19437337	AT5TE69925	.	-	ATDNA12T3_2	.	DNA	54	tiny	660	high	8218881	chromoarm	839	no-CHH	no-CHH	.	.	.	.	.
Chr5	19437717	19438135	AT5TE69930	.	-	ATLINE1_4	L1	LINE	418	short	102	medium	8219315	chromoarm	1273	no-CHH	no-CHH	.	.	.	.	.
Chr5	19438433	19438984	AT5TE69935	.	-	ATREP11	Helitron	RC	551	short	841	high	8220031	chromoarm	1989	no-CHH	no-CHH	.	.	.	.	.
Chr5	19438984	19440096	AT5TE69940	.	+	VANDAL18NA	MuDR	DNA	1112	short	24	low	8220582	chromoarm	2540	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	19440448	19440842	AT5TE69945	.	-	ATREP15	Helitron	RC	394	short	1003	high	8222046	chromoarm	3470	no-CHH	no-CHH	.	.	.	.	.
Chr5	19440842	19441266	AT5TE69950	.	+	ATREP10D	Helitron	RC	424	short	1295	high	8222440	chromoarm	3046	no-CHH	no-CHH	.	.	.	.	.
Chr5	19441266	19442593	AT5TE69955	.	-	HELITRONY3	Helitron	RC	1327	short	1399	high	8222864	chromoarm	1719	no-CHH	no-CHH	.	.	.	.	.
Chr5	19443311	19444302	AT5TE69960	.	-	ATREP10D	Helitron	RC	991	short	1295	high	8224909	chromoarm	10	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	19444761	19445562	AT5TE69965	.	-	ATREP15	Helitron	RC	801	short	1003	high	8226359	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	19447890	19447952	AT5TE69970	.	+	HELITRONY2	Helitron	RC	62	tiny	198	medium	8229488	chromoarm	100	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	19447952	19448972	AT5TE69975	.	+	ATREP10D	Helitron	RC	1020	short	1295	high	8229550	chromoarm	162	no-CHH	no-CHH	.	.	.	.	.
Chr5	19448972	19449012	AT5TE69980	.	+	ATREP5	Helitron	RC	40	tiny	624	high	8230570	chromoarm	1182	no-RdDM	no-CHH	.	.	.	.	.
Chr5	19449329	19449547	AT5TE69985	.	-	ATLINE1A	L1	LINE	218	short	289	high	8230927	chromoarm	1539	no-CHH	no-CHH	.	.	.	.	.
Chr5	19449547	19450849	AT5TE69990	.	-	ATLINE1_4	L1	LINE	1302	short	102	medium	8231145	chromoarm	1757	no-CHH	no-CHH	.	.	.	.	.
Chr5	19450849	19450891	AT5TE69995	.	-	ATLINE1_5	L1	LINE	42	tiny	91	medium	8232447	chromoarm	3059	no-CHH	no-CHH	.	.	.	.	.
Chr5	19451749	19452354	AT5TE70000	.	-	HELITRONY3	Helitron	RC	605	short	1399	high	8233347	chromoarm	3959	no-CHH	no-CHH	.	.	.	.	.
Chr5	19452354	19452965	AT5TE70005	.	-	ATDNA12T3_2	.	DNA	611	short	660	high	8233952	chromoarm	4035	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	19453481	19453940	AT5TE70010	.	+	ATREP3	Helitron	RC	459	short	1439	high	8235079	chromoarm	3060	no-CHH	no-CHH	.	.	.	.	.
Chr5	19453947	19454204	AT5TE70015	.	+	DT1	Mariner	DNA	257	short	123	medium	8235545	chromoarm	2796	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	19454204	19454559	AT5TE70020	.	+	ATREP15	Helitron	RC	355	short	1003	high	8235802	chromoarm	2441	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	19454559	19455419	AT5TE70025	.	+	ATMU10	MuDR	DNA	860	short	87	medium	8236157	chromoarm	1581	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	19465807	19465893	AT5TE70060	.	+	ATLINE1_3A	L1	LINE	86	tiny	160	medium	8247405	chromoarm	404	no-CHH	no-CHH	.	.	.	.	.
Chr5	19473917	19475068	AT5TE70090	.	+	ATREP11	Helitron	RC	1151	short	841	high	8255515	chromoarm	227	no-CHH	no-CHH	.	.	.	.	.
Chr5	19479296	19480421	AT5TE70100	.	-	VANDAL8	MuDR	DNA	1125	short	123	medium	8260894	chromoarm	418	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	19479570	19480156	AT5TE70105	.	+	ATREP2A	Helitron	RC	586	short	116	medium	8261168	chromoarm	692	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	19483351	19483913	AT5TE70115	.	-	HELITRON4	Helitron	RC	562	short	199	medium	8264949	chromoarm	120	no-CHH	no-CHH	.	.	.	.	.
Chr5	19493777	19494625	AT5TE70150	.	+	ATCOPIA42	Copia	LTR	848	short	35	low	8275375	chromoarm	1195	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	19495550	19496983	AT5TE70155	.	-	HELITRONY3	Helitron	RC	1433	short	1399	high	8277148	chromoarm	2968	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	19497435	19497660	AT5TE70160	.	-	ATHATN2	HAT	DNA	225	short	46	low	8279033	chromoarm	3496	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	19497676	19497853	AT5TE70165	.	-	ATREP15	Helitron	RC	177	short	1003	high	8279274	chromoarm	3303	no-RdDM	no-CHH	.	.	.	.	.
Chr5	19497853	19498746	AT5TE70170	.	-	ATREP11	Helitron	RC	893	short	841	high	8279451	chromoarm	2410	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	19498746	19499722	AT5TE70175	.	-	VANDAL18NB	MuDR	DNA	976	short	19	low	8280344	chromoarm	1434	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	19501841	19502272	AT5TE70180	.	+	BRODYAGA1A	MuDR	DNA	431	short	586	high	8283439	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	19504405	19504540	AT5TE70185	.	-	ATREP5	Helitron	RC	135	short	624	high	8286003	chromoarm	48	no-CHH	no-CHH	.	.	.	.	.
Chr5	19504540	19504727	AT5TE70190	.	+	HELITRONY3	Helitron	RC	187	short	1399	high	8286138	chromoarm	183	no-CHH	no-CHH	.	.	.	.	.
Chr5	19504735	19506670	AT5TE70195	.	-	ATREP10D	Helitron	RC	1935	short	1295	high	8286333	chromoarm	378	no-CHH	no-CHH	.	.	.	.	.
Chr5	19507870	19508023	AT5TE70200	.	-	ATTIRX1D	.	DNA	153	short	28	low	8289468	chromoarm	186	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	19520863	19521286	AT5TE70250	.	-	BRODYAGA1A	MuDR	DNA	423	short	586	high	8302461	chromoarm	451	no-CHH	no-CHH	.	.	.	.	.
Chr5	19521765	19522130	AT5TE70255	.	+	HELITRONY3	Helitron	RC	365	short	1399	high	8303363	chromoarm	366	no-CHH	no-CHH	.	.	.	.	.
Chr5	19526341	19526568	AT5TE70265	.	+	RP1_AT	.	DNA	228	short	87	medium	8307938	chromoarm	1450	.	.	.	.	.	.	.
Chr5	19526568	19526601	AT5TE70270	.	+	RP1_AT	.	DNA	33	tiny	87	medium	8308166	chromoarm	1417	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	19531715	19532219	AT5TE70280	.	-	ARNOLDY1	MuDR	DNA	504	short	237	high	8313313	chromoarm	509	no-CHH	no-CHH	.	.	.	.	.
Chr5	19532219	19532320	AT5TE70285	.	+	ATREP19	.	DNA	101	short	189	medium	8313817	chromoarm	408	no-CHH	no-CHH	.	.	.	.	.
Chr5	19537489	19537966	AT5TE70295	.	+	ATREP3	Helitron	RC	477	short	1439	high	8319087	chromoarm	1241	no-CHH	no-CHH	.	.	.	.	.
Chr5	19538438	19538692	AT5TE70300	.	-	ATREP9	Helitron	RC	254	short	201	high	8320036	chromoarm	515	no-CHH	no-CHH	.	.	.	.	.
Chr5	19545882	19546188	AT5TE70330	.	+	ATHILA8A	Gypsy	LTR	306	short	97	medium	8327480	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	19549274	19549618	AT5TE70340	.	+	ATLINE1_2	L1	LINE	344	short	41	low	8330872	chromoarm	311	no-CHH	no-CHH	.	.	.	.	.
Chr5	19556151	19556460	AT5TE70360	.	+	ATHILA7	Gypsy	LTR	309	short	134	medium	8337749	chromoarm	1029	no-CHH	no-RdDM	.	.	.	.	.
Chr5	19557039	19557327	AT5TE70365	.	+	ATHILA7	Gypsy	LTR	288	short	134	medium	8338637	chromoarm	1917	no-CHH	no-CHH	.	.	.	.	.
Chr5	19558039	19558170	AT5TE70370	.	+	ATREP11	Helitron	RC	131	short	841	high	8339637	chromoarm	1130	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	19558170	19558950	AT5TE70375	.	-	ATREP5	Helitron	RC	780	short	624	high	8339768	chromoarm	350	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	19572722	19573090	AT5TE70420	.	+	ATREP10B	Helitron	RC	368	short	491	high	8354320	chromoarm	165	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	19580486	19581011	AT5TE70450	.	-	ATREP15	Helitron	RC	525	short	1003	high	8362084	chromoarm	124	no-CHH	no-CHH	.	.	.	.	.
Chr5	19585652	19585804	AT5TE70460	.	+	ATHPOGON1	Pogo	DNA	152	short	174	medium	8367250	chromoarm	184	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	19608535	19608650	AT5TE70540	.	-	ATDNAI27T9C	MuDR	DNA	115	short	108	medium	8390133	chromoarm	820	no-CHH	no-CHH	.	.	.	.	.
Chr5	19639716	19640579	AT5TE70660	.	-	BOMZH2	MuDR	DNA	864	short	47	low	8421313	chromoarm	350	.	.	.	.	.	.	.
Chr5	19640056	19640173	AT5TE70665	.	-	BOMZH2	MuDR	DNA	117	short	47	low	8421654	chromoarm	691	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr5	19640579	19640602	AT5TE70670	.	+	ATMU6N1	MuDR	DNA	23	tiny	39	low	8422177	chromoarm	1207	no-CHH	no-RdDM	.	.	.	.	.
Chr5	19641600	19641653	AT5TE70675	.	+	ATLINEIII	L1	LINE	53	tiny	196	medium	8423198	chromoarm	156	no-CHH	no-CHH	.	.	.	.	.
Chr5	19648553	19648596	AT5TE70700	.	+	ATREP1	Helitron	RC	43	tiny	498	high	8430151	chromoarm	316	no-CHH	no-CHH	.	.	.	.	.
Chr5	19648596	19649533	AT5TE70705	.	+	ATREP11	Helitron	RC	937	short	841	high	8430194	chromoarm	359	no-CHH	no-CHH	.	.	.	.	.
Chr5	19670557	19670785	AT5TE70780	.	+	ATREP4	Helitron	RC	228	short	832	high	8452155	chromoarm	670	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	19670785	19671601	AT5TE70785	.	+	ATREP3	Helitron	RC	816	short	1439	high	8452383	chromoarm	898	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	19671613	19671822	AT5TE70790	.	+	ATREP4	Helitron	RC	209	short	832	high	8453211	chromoarm	1726	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	19671840	19672478	AT5TE70795	.	-	ATHATN7	HAT	DNA	638	short	71	medium	8453438	chromoarm	1913	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	19672478	19672816	AT5TE70800	.	+	ATREP4	Helitron	RC	338	short	832	high	8454076	chromoarm	1575	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	19674216	19675080	AT5TE70805	.	+	HELITRONY1E	Helitron	RC	864	short	447	high	8455814	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	19684998	19685167	AT5TE70840	.	-	ATDNAI27T9A	MuDR	DNA	169	short	116	medium	8466596	chromoarm	0	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	19685167	19685201	AT5TE70845	.	-	VANDAL8	MuDR	DNA	34	tiny	123	medium	8466765	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	19687003	19687357	AT5TE70850	.	-	ATREP10D	Helitron	RC	354	short	1295	high	8468601	chromoarm	132	no-CHH	no-CHH	.	.	.	.	.
Chr5	19687357	19688037	AT5TE70855	.	-	TAG3N1	HAT	DNA	680	short	97	medium	8468955	chromoarm	486	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	19693945	19694154	AT5TE70870	.	-	DT1	Mariner	DNA	209	short	123	medium	8475543	chromoarm	289	no-CHH	no-CHH	.	.	.	.	.
Chr5	19699770	19701657	AT5TE70890	.	+	ATREP10D	Helitron	RC	1887	short	1295	high	8481368	chromoarm	0	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	19718569	19719082	AT5TE70950	.	+	VANDAL17	MuDR	DNA	513	short	178	medium	8500167	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	19719082	19719109	AT5TE70955	.	-	ATREP1	Helitron	RC	27	tiny	498	high	8500680	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	19733129	19733440	AT5TE71000	.	+	HELITRONY3	Helitron	RC	311	short	1399	high	8514727	chromoarm	578	no-CHH	no-CHH	.	.	.	.	.
Chr5	19733440	19733962	AT5TE71005	.	+	TNAT1A	.	DNA	522	short	162	medium	8515038	chromoarm	56	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	19739716	19739812	AT5TE71020	.	-	ATREP10B	Helitron	RC	96	tiny	491	high	8521314	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	19739812	19739834	AT5TE71025	.	+	HELITRONY1A	Helitron	RC	22	tiny	271	high	8521410	chromoarm	22	no-CHH	no-CHH	.	.	.	.	.
Chr5	19739834	19742615	AT5TE71030	.	-	ATREP3	Helitron	RC	2781	medium	1439	high	8521432	chromoarm	44	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	19742615	19743368	AT5TE71035	.	-	ATREP3	Helitron	RC	753	short	1439	high	8524213	chromoarm	1356	no-CHH	no-CHH	.	.	.	.	.
Chr5	19743368	19744026	AT5TE71040	.	+	ATREP10D	Helitron	RC	658	short	1295	high	8524966	chromoarm	698	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	19750276	19750317	AT5TE71060	.	+	ATREP10B	Helitron	RC	41	tiny	491	high	8531874	chromoarm	263	no-CHH	no-CHH	.	.	.	.	.
Chr5	19750317	19751608	AT5TE71065	.	-	ATREP11	Helitron	RC	1291	short	841	high	8531915	chromoarm	304	no-CHH	no-CHH	.	.	.	.	.
Chr5	19751608	19752200	AT5TE71070	.	-	ATREP10D	Helitron	RC	592	short	1295	high	8533206	chromoarm	1595	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	19752200	19752270	AT5TE71075	.	-	ATREP5	Helitron	RC	70	tiny	624	high	8533798	chromoarm	2187	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	19752840	19753120	AT5TE71080	.	+	ARNOLDY2	MuDR	DNA	280	short	288	high	8534438	chromoarm	1944	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	19757552	19757602	AT5TE71090	.	+	ATREP10D	Helitron	RC	50	tiny	1295	high	8539150	chromoarm	1630	no-CHH	no-CHH	.	.	.	.	.
Chr5	19757602	19757723	AT5TE71095	.	-	HELITRONY3	Helitron	RC	121	short	1399	high	8539200	chromoarm	1509	no-CHH	no-CHH	.	.	.	.	.
Chr5	19757723	19758771	AT5TE71100	.	+	ATREP10A	Helitron	RC	1048	short	279	high	8539321	chromoarm	461	no-CHH	no-CHH	.	.	.	.	.
Chr5	19794450	19794485	AT5TE71230	.	-	HELITRONY3	Helitron	RC	35	tiny	1399	high	8576048	chromoarm	104	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	19794485	19795890	AT5TE71235	.	-	ATREP10D	Helitron	RC	1405	short	1295	high	8576083	chromoarm	139	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	19795890	19796051	AT5TE71240	.	+	HELITRONY1E	Helitron	RC	161	short	447	high	8577488	chromoarm	1544	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	19796401	19797066	AT5TE71245	.	+	ATREP15	Helitron	RC	665	short	1003	high	8577999	chromoarm	2055	no-CHH	no-CHH	.	.	.	.	.
Chr5	19798951	19799047	AT5TE71250	.	-	ATREP7	Helitron	RC	96	tiny	164	medium	8580549	chromoarm	1221	no-CHH	no-CHH	.	.	.	.	.
Chr5	19799139	19799228	AT5TE71255	.	+	BRODYAGA1A	MuDR	DNA	89	tiny	586	high	8580737	chromoarm	1040	no-CHH	no-CHH	.	.	.	.	.
Chr5	19799228	19799957	AT5TE71260	.	-	ATREP11	Helitron	RC	729	short	841	high	8580826	chromoarm	311	no-CHH	no-CHH	.	.	.	.	.
Chr5	19799957	19800001	AT5TE71265	.	+	HELITRONY1A	Helitron	RC	44	tiny	271	high	8581555	chromoarm	267	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	19822934	19823876	AT5TE71350	.	+	SIMPLEGUY1	Harbinger	DNA	942	short	116	medium	8604532	chromoarm	1363	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	19823876	19824385	AT5TE71355	.	+	HELITRONY3	Helitron	RC	509	short	1399	high	8605474	chromoarm	854	no-CHH	no-CHH	.	.	.	.	.
Chr5	19832299	19832442	AT5TE71380	.	-	TAG2	HAT	DNA	143	short	86	medium	8613897	chromoarm	512	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	19834956	19835124	AT5TE71385	.	-	HELITRON1	Helitron	RC	168	short	130	medium	8616554	chromoarm	47	no-CHH	no-CHH	.	.	.	.	.
Chr5	19835424	19835771	AT5TE71390	.	+	VANDAL17	MuDR	DNA	347	short	178	medium	8617022	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	19842692	19843142	AT5TE71420	.	-	HELITRONY1D	Helitron	RC	450	short	756	high	8624290	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	19845460	19845849	AT5TE71425	.	-	BRODYAGA1A	MuDR	DNA	389	short	586	high	8627058	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	19846522	19846950	AT5TE71430	.	-	ATREP10B	Helitron	RC	428	short	491	high	8628120	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	19848360	19848459	AT5TE71435	.	+	ATREP3	Helitron	RC	99	tiny	1439	high	8629958	chromoarm	110	no-CHH	no-CHH	.	.	.	.	.
Chr5	19848459	19848856	AT5TE71440	.	-	ATDNA2T9C	MuDR	DNA	397	short	242	high	8630057	chromoarm	209	no-CHH	no-CHH	.	.	.	.	.
Chr5	19853990	19856859	AT5TE71450	.	+	Unassigned	.	Unassigned	2869	medium	.	low	8635588	chromoarm	168	no-CHH	no-CHH	ExpressedAndAnnotated	19853935	19856851	+	transcript_id-"4b38895d-bc51-41e9-9ccc-738bf7324489|6"
Chr5	19859887	19860685	AT5TE71460	.	+	ATREP10B	Helitron	RC	798	short	491	high	8641485	chromoarm	38	no-CHH	no-CHH	.	.	.	.	.
Chr5	19860685	19860717	AT5TE71465	.	+	ATREP5	Helitron	RC	32	tiny	624	high	8642283	chromoarm	6	no-RdDM	no-CHH	.	.	.	.	.
Chr5	19870237	19870382	AT5TE71500	.	-	HELITRONY3	Helitron	RC	145	short	1399	high	8651835	chromoarm	29	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	19870382	19870731	AT5TE71505	.	-	ATREP5	Helitron	RC	349	short	624	high	8651980	chromoarm	174	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	19870731	19870963	AT5TE71510	.	-	ATLINE1A	L1	LINE	232	short	289	high	8652329	chromoarm	377	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	19891195	19891846	AT5TE71590	.	-	ATHILA6A	Gypsy	LTR	651	short	247	high	8672793	chromoarm	1050	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	19891862	19892519	AT5TE71595	.	-	ATHILA6A	Gypsy	LTR	657	short	247	high	8673460	chromoarm	1717	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr5	19893558	19894200	AT5TE71600	.	-	ATLINE2	L1	LINE	642	short	138	medium	8675156	chromoarm	3413	no-CHH	no-CHH	.	.	.	.	.
Chr5	19894856	19895478	AT5TE71605	.	-	HELITRONY1D	Helitron	RC	622	short	756	high	8676454	chromoarm	2221	no-CHH	no-CHH	.	.	.	.	.
Chr5	19895478	19895535	AT5TE71610	.	+	BRODYAGA1	MuDR	DNA	57	tiny	251	high	8677076	chromoarm	2164	no-CHH	no-CHH	.	.	.	.	.
Chr5	19910476	19911610	AT5TE71670	.	+	SIMPLEGUY1	Harbinger	DNA	1134	short	116	medium	8692074	chromoarm	1144	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	19912329	19912438	AT5TE71675	.	-	ATREP4	Helitron	RC	109	short	832	high	8693927	chromoarm	2997	no-CHH	no-CHH	.	.	.	.	.
Chr5	19912438	19913546	AT5TE71680	.	+	ATREP1	Helitron	RC	1108	short	498	high	8694036	chromoarm	2357	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	19913550	19913646	AT5TE71685	.	+	ATREP2	Helitron	RC	96	tiny	164	medium	8695148	chromoarm	2257	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	19920176	19920768	AT5TE71700	.	+	HELITRONY1D	Helitron	RC	592	short	756	high	8701774	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	19929914	19930121	AT5TE71730	.	-	ATREP1	Helitron	RC	207	short	498	high	8711512	chromoarm	1387	no-CHH	no-CHH	.	.	.	.	.
Chr5	19930121	19930578	AT5TE71735	.	-	HELITRONY1B	Helitron	RC	457	short	414	high	8711719	chromoarm	1594	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	19930590	19931898	AT5TE71740	.	+	ATREP3	Helitron	RC	1308	short	1439	high	8712188	chromoarm	602	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	19931898	19932026	AT5TE71745	.	+	ATREP11	Helitron	RC	128	short	841	high	8713496	chromoarm	474	no-CHH	no-CHH	.	.	.	.	.
Chr5	19932026	19932087	AT5TE71750	.	-	ATREP10D	Helitron	RC	61	tiny	1295	high	8713624	chromoarm	413	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	19964311	19964368	AT5TE71870	.	+	HELITRON2	Helitron	RC	57	tiny	194	medium	8745909	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	19964368	19964981	AT5TE71875	.	-	HELITRONY3	Helitron	RC	613	short	1399	high	8745966	chromoarm	17	no-CHH	no-CHH	.	.	.	.	.
Chr5	19966161	19966791	AT5TE71880	.	+	ATREP10A	Helitron	RC	630	short	279	high	8747759	chromoarm	7	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	19967728	19967974	AT5TE71885	.	+	RathE2_cons	.	RathE2_cons	246	short	74	medium	8749326	chromoarm	201	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	19970092	19970235	AT5TE71890	.	+	ATHATN6	HAT	DNA	143	short	43	low	8751690	chromoarm	1785	no-CHH	no-CHH	.	.	.	.	.
Chr5	19970495	19970684	AT5TE71895	.	+	ATHATN2	HAT	DNA	189	short	46	low	8752093	chromoarm	1336	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	19970684	19970716	AT5TE71900	.	+	ATHAT2	HAT	DNA	32	tiny	19	low	8752282	chromoarm	1304	no-CHH	no-CHH	.	.	.	.	.
Chr5	19971189	19971459	AT5TE71905	.	+	ATHILA7	Gypsy	LTR	270	short	134	medium	8752787	chromoarm	561	no-CHH	no-CHH	.	.	.	.	.
Chr5	19971661	19971827	AT5TE71910	.	+	ATLINE2	L1	LINE	166	short	138	medium	8753259	chromoarm	193	no-CHH	no-CHH	.	.	.	.	.
Chr5	19998124	19998159	AT5TE72010	.	-	RP1_AT	.	DNA	35	tiny	87	medium	8779722	chromoarm	987	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	19998159	19998384	AT5TE72015	.	-	RP1_AT	.	DNA	225	short	87	medium	8779757	chromoarm	762	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	20004801	20005231	AT5TE72030	.	+	BRODYAGA1A	MuDR	DNA	430	short	586	high	8786399	chromoarm	699	no-CHH	no-CHH	.	.	.	.	.
Chr5	20034028	20034913	AT5TE72140	.	-	ATGP6	Gypsy	LTR	885	short	25	low	8815626	chromoarm	252	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	20047048	20047149	AT5TE72190	.	-	HELITRONY3	Helitron	RC	101	short	1399	high	8828646	chromoarm	1594	no-CHH	no-CHH	.	.	.	.	.
Chr5	20047149	20048269	AT5TE72195	.	-	ATREP10D	Helitron	RC	1120	short	1295	high	8828747	chromoarm	648	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	20048357	20049583	AT5TE72200	.	-	TSCL	.	LINE?	1226	short	81	medium	8829955	chromoarm	0	PolIV-RdDM	no-CHH	ExpressedAndAnnotated	20048949	20048357	-	transcript_id-"3e1bc8d0-68e4-4ca7-82e6-930260ecc073|7"
Chr5	20050197	20050882	AT5TE72205	.	+	ATREP11	Helitron	RC	685	short	841	high	8831795	chromoarm	734	no-CHH	no-CHH	.	.	.	.	.
Chr5	20058303	20058414	AT5TE72230	.	-	ATCOPIA64	Copia	LTR	111	short	13	low	8839901	chromoarm	108	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	20059829	20061632	AT5TE72235	.	-	TA11	L1	LINE	1803	short	157	medium	8841427	chromoarm	1634	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	20073540	20074112	AT5TE72270	.	-	ATREP9	Helitron	RC	572	short	201	high	8855138	chromoarm	1215	no-CHH	no-CHH	.	.	.	.	.
Chr5	20097911	20097998	AT5TE72360	.	-	ATHILA8A	Gypsy	LTR	87	tiny	97	medium	8879509	chromoarm	537	no-CHH	no-CHH	.	.	.	.	.
Chr5	20099892	20100219	AT5TE72365	.	+	ATLINE2	L1	LINE	327	short	138	medium	8881490	chromoarm	714	no-CHH	no-CHH	.	.	.	.	.
Chr5	20115981	20116077	AT5TE72420	.	-	HARBINGER	Harbinger	DNA	96	tiny	90	medium	8897579	chromoarm	0	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr5	20116222	20116359	AT5TE72425	.	+	HELITRONY1E	Helitron	RC	137	short	447	high	8897820	chromoarm	97	no-CHH	no-CHH	.	.	.	.	.
Chr5	20116359	20117431	AT5TE72430	.	+	ATREP3	Helitron	RC	1072	short	1439	high	8897957	chromoarm	234	no-CHH	no-CHH	.	.	.	.	.
Chr5	20117431	20117463	AT5TE72435	.	-	ATREP10D	Helitron	RC	32	tiny	1295	high	8899029	chromoarm	1306	no-CHH	no-CHH	.	.	.	.	.
Chr5	20117682	20117973	AT5TE72440	.	-	ATHPOGON1	Pogo	DNA	291	short	174	medium	8899280	chromoarm	1557	no-CHH	no-CHH	.	.	.	.	.
Chr5	20117973	20118403	AT5TE72445	.	-	HELITRONY1A	Helitron	RC	430	short	271	high	8899571	chromoarm	1848	no-CHH	no-CHH	.	.	.	.	.
Chr5	20118403	20118566	AT5TE72450	.	-	HELITRONY1D	Helitron	RC	163	short	756	high	8900001	chromoarm	2278	no-CHH	no-CHH	.	.	.	.	.
Chr5	20119133	20119351	AT5TE72455	.	+	ATREP10D	Helitron	RC	218	short	1295	high	8900731	chromoarm	3008	no-CHH	no-CHH	.	.	.	.	.
Chr5	20119352	20119735	AT5TE72460	.	-	VANDAL8	MuDR	DNA	384	short	123	medium	8900949	chromoarm	3226	.	.	.	.	.	.	.
Chr5	20119735	20119989	AT5TE72465	.	-	ATREP5	Helitron	RC	254	short	624	high	8901333	chromoarm	3610	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	20127470	20129724	AT5TE72490	.	+	ATLINE1A	L1	LINE	2254	medium	289	high	8909068	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	20147471	20148075	AT5TE72560	.	-	BRODYAGA1A	MuDR	DNA	604	short	586	high	8929069	chromoarm	1030	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	20148076	20148311	AT5TE72565	.	+	HELITRON4	Helitron	RC	236	short	199	medium	8929673	chromoarm	1634	.	.	LowExpressed	.	.	.	.
Chr5	20148312	20148337	AT5TE72570	.	+	ATREP3	Helitron	RC	26	tiny	1439	high	8929909	chromoarm	1870	.	.	LowExpressed	.	.	.	.
Chr5	20148672	20149441	AT5TE72575	.	+	ATREP9	Helitron	RC	769	short	201	high	8930270	chromoarm	1975	no-CHH	no-CHH	.	.	.	.	.
Chr5	20151263	20152056	AT5TE72580	.	-	ATSINE2A	.	SINE	793	short	33	low	8932861	chromoarm	0	no-CHH	no-CHH	ExpressedAndAnnotated	20152570	20151139	-	transcript_id-"18bafbb2-e48e-4abd-80a3-92d4564cca8d|6"
Chr5	20156796	20156934	AT5TE72590	.	+	ATHILA0_I	Gypsy	LTR	138	short	138	medium	8938394	chromoarm	1222	no-CHH	no-CHH	.	.	.	.	.
Chr5	20165739	20166410	AT5TE72620	.	-	ATREP10A	Helitron	RC	671	short	279	high	8947337	chromoarm	708	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	20166410	20166489	AT5TE72625	.	-	ATREP10	Helitron	RC	79	tiny	63	medium	8948008	chromoarm	629	no-CHH	no-CHH	.	.	.	.	.
Chr5	20169821	20170514	AT5TE72635	.	-	ATREP9	Helitron	RC	693	short	201	high	8951419	chromoarm	401	no-CHH	no-CHH	.	.	.	.	.
Chr5	20209066	20209369	AT5TE72770	.	+	ATLINE1_2	L1	LINE	303	short	41	low	8990664	chromoarm	438	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	20209387	20209853	AT5TE72775	.	+	ATCOPIA67	Copia	LTR	466	short	15	low	8990985	chromoarm	759	PolIV-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	20209998	20210374	AT5TE72780	.	-	ATCOPIA11	Copia	LTR	376	short	26	low	8991596	chromoarm	503	no-CHH	no-CHH	.	.	.	.	.
Chr5	20233098	20233143	AT5TE72860	.	-	SIMPLEHAT1	HAT	DNA	45	tiny	56	medium	9014696	chromoarm	3	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	20233143	20233163	AT5TE72865	.	-	SIMPLEHAT2	HAT	DNA	20	tiny	73	medium	9014741	chromoarm	48	no-CHH	no-CHH	.	.	.	.	.
Chr5	20233163	20233830	AT5TE72870	.	-	SIMPLEGUY1	Harbinger	DNA	667	short	116	medium	9014761	chromoarm	68	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	20236637	20237443	AT5TE72880	.	-	HELITRONY1B	Helitron	RC	806	short	414	high	9018235	chromoarm	502	no-CHH	no-CHH	.	.	.	.	.
Chr5	20266283	20266957	AT5TE72990	.	-	HELITRONY3	Helitron	RC	674	short	1399	high	9047881	chromoarm	949	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	20266957	20267157	AT5TE72995	.	+	ATREP4	Helitron	RC	200	short	832	high	9048555	chromoarm	1623	no-CHH	no-CHH	.	.	.	.	.
Chr5	20272902	20273043	AT5TE73010	.	+	ATREP10D	Helitron	RC	141	short	1295	high	9054500	chromoarm	354	no-CHH	no-CHH	.	.	.	.	.
Chr5	20273043	20274718	AT5TE73015	.	-	ATREP5	Helitron	RC	1675	short	624	high	9054641	chromoarm	495	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	20277085	20278156	AT5TE73020	.	-	SIMPLEGUY1	Harbinger	DNA	1071	short	116	medium	9058683	chromoarm	4148	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	20278553	20278595	AT5TE73025	.	-	ATREP1	Helitron	RC	42	tiny	498	high	9060151	chromoarm	3709	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	20278614	20278779	AT5TE73030	.	-	ATREP1	Helitron	RC	165	short	498	high	9060212	chromoarm	3525	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	20278779	20282135	AT5TE73035	.	-	ATREP3	Helitron	RC	3356	medium	1439	high	9060377	chromoarm	169	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	20282141	20282164	AT5TE73040	.	-	ATREP15	Helitron	RC	23	tiny	1003	high	9063739	chromoarm	140	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	20292426	20292824	AT5TE73080	.	+	BRODYAGA1A	MuDR	DNA	398	short	586	high	9074024	chromoarm	283	no-CHH	no-CHH	.	.	.	.	.
Chr5	20294974	20295007	AT5TE73085	.	-	RP1_AT	.	DNA	33	tiny	87	medium	9076572	chromoarm	2227	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	20295007	20295238	AT5TE73090	.	-	RP1_AT	.	DNA	231	short	87	medium	9076605	chromoarm	1996	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	20295647	20296115	AT5TE73095	.	+	ATREP19	.	DNA	468	short	189	medium	9077245	chromoarm	1119	no-CHH	no-CHH	.	.	.	.	.
Chr5	20296503	20296760	AT5TE73100	.	-	ATLINE1_6	L1	LINE	257	short	129	medium	9078101	chromoarm	474	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	20342200	20342307	AT5TE73270	.	-	ATCOPIA22	Copia	LTR	107	short	14	low	9123798	chromoarm	530	no-CHH	no-CHH	.	.	.	.	.
Chr5	20355473	20359002	AT5TE73320	.	-	ATREP3	Helitron	RC	3529	medium	1439	high	9137071	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	20356132	20356463	AT5TE73325	.	+	ATTIR16T3A	.	DNA	331	short	106	medium	9137730	chromoarm	662	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	20359369	20359974	AT5TE73335	.	+	ATREP4	Helitron	RC	605	short	832	high	9140967	chromoarm	57	no-CHH	no-CHH	.	.	.	.	.
Chr5	20378224	20378611	AT5TE73400	.	+	ATREP11A	Helitron	RC	387	short	95	medium	9159822	chromoarm	877	no-CHH	no-CHH	.	.	.	.	.
Chr5	20387670	20388386	AT5TE73430	.	+	ATREP15	Helitron	RC	716	short	1003	high	9169268	chromoarm	1679	no-CHH	no-CHH	.	.	.	.	.
Chr5	20388386	20388707	AT5TE73435	.	-	ATREP10B	Helitron	RC	321	short	491	high	9169984	chromoarm	1358	no-CHH	no-CHH	.	.	.	.	.
Chr5	20398194	20398594	AT5TE73470	.	+	ATREP3	Helitron	RC	401	short	1439	high	9179791	chromoarm	0	.	.	.	.	.	.	.
Chr5	20398616	20398770	AT5TE73475	.	+	HELITRONY2	Helitron	RC	154	short	198	medium	9180214	chromoarm	419	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	20398832	20399467	AT5TE73480	.	-	ATHATN7	HAT	DNA	635	short	71	medium	9180430	chromoarm	635	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	20399468	20399549	AT5TE73485	.	+	ATREP3	Helitron	RC	82	tiny	1439	high	9181065	chromoarm	1270	.	.	.	.	.	.	.
Chr5	20399549	20400092	AT5TE73490	.	+	ATDNA2T9C	MuDR	DNA	543	short	242	high	9181147	chromoarm	1352	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	20400285	20401456	AT5TE73495	.	+	ATHILA7	Gypsy	LTR	1171	short	134	medium	9181883	chromoarm	987	no-CHH	no-CHH	.	.	.	.	.
Chr5	20400895	20401122	AT5TE73500	.	-	ATREP17	MuDR	DNA	227	short	34	low	9182493	chromoarm	1321	no-CHH	no-CHH	.	.	.	.	.
Chr5	20401719	20401872	AT5TE73505	.	+	ATLINE1A	L1	LINE	153	short	289	high	9183317	chromoarm	571	no-CHH	no-CHH	.	.	.	.	.
Chr5	20408153	20408430	AT5TE73520	.	+	ATHILA7	Gypsy	LTR	277	short	134	medium	9189751	chromoarm	1778	no-CHH	no-CHH	.	.	.	.	.
Chr5	20411402	20411517	AT5TE73530	.	-	ATHPOGON1	Pogo	DNA	115	short	174	medium	9193000	chromoarm	4314	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	20412807	20413465	AT5TE73535	.	-	HELITRONY3	Helitron	RC	658	short	1399	high	9194405	chromoarm	2366	no-CHH	no-CHH	.	.	.	.	.
Chr5	20413465	20413668	AT5TE73540	.	+	HELITRONY1D	Helitron	RC	203	short	756	high	9195063	chromoarm	2163	no-CHH	no-CHH	.	.	.	.	.
Chr5	20418516	20419189	AT5TE73550	.	-	ATREP9	Helitron	RC	673	short	201	high	9200114	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	20419720	20420204	AT5TE73555	.	-	BRODYAGA1A	MuDR	DNA	484	short	586	high	9201318	chromoarm	945	no-CHH	no-CHH	.	.	.	.	.
Chr5	20420204	20420391	AT5TE73560	.	+	ATDNA12T3_2	.	DNA	187	short	660	high	9201802	chromoarm	758	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	20426187	20426261	AT5TE73580	.	-	HELITRONY2	Helitron	RC	74	tiny	198	medium	9207785	chromoarm	663	no-CHH	no-CHH	.	.	.	.	.
Chr5	20426261	20426658	AT5TE73585	.	+	ATREP5	Helitron	RC	397	short	624	high	9207859	chromoarm	737	no-CHH	no-CHH	.	.	.	.	.
Chr5	20426724	20426890	AT5TE73590	.	-	TAG2	HAT	DNA	166	short	86	medium	9208322	chromoarm	1200	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	20426903	20427302	AT5TE73595	.	+	SIMPLEGUY1	Harbinger	DNA	400	short	116	medium	9208500	chromoarm	840	.	.	.	.	.	.	.
Chr5	20427303	20427325	AT5TE73600	.	+	SIMPLEGUY1	Harbinger	DNA	23	tiny	116	medium	9208900	chromoarm	817	.	.	.	.	.	.	.
Chr5	20427334	20427494	AT5TE73605	.	-	TAG2	HAT	DNA	160	short	86	medium	9208932	chromoarm	648	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	20435447	20435925	AT5TE73630	.	-	ATREP18	.	DNA	478	short	391	high	9217045	chromoarm	382	no-CHH	no-CHH	.	.	.	.	.
Chr5	20438825	20440151	AT5TE73640	.	+	ATREP10D	Helitron	RC	1326	short	1295	high	9220423	chromoarm	1290	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	20440151	20440428	AT5TE73645	.	+	ATREP3	Helitron	RC	277	short	1439	high	9221749	chromoarm	2374	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr5	20441124	20441702	AT5TE73650	.	-	ARNOLD2	MuDR	DNA	578	short	68	medium	9222722	chromoarm	1100	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	20447334	20447606	AT5TE73670	.	+	ATMUNX1	MuDR	DNA	272	short	155	medium	9228932	chromoarm	134	no-CHH	no-CHH	.	.	.	.	.
Chr5	20464954	20465846	AT5TE73730	.	-	ATREP10B	Helitron	RC	892	short	491	high	9246552	chromoarm	645	no-CHH	no-CHH	.	.	.	.	.
Chr5	20465846	20465880	AT5TE73735	.	+	ATREP10A	Helitron	RC	34	tiny	279	high	9247444	chromoarm	611	no-CHH	no-CHH	.	.	.	.	.
Chr5	20470396	20471049	AT5TE73745	.	-	HELITRONY1D	Helitron	RC	653	short	756	high	9251994	chromoarm	2312	no-CHH	no-CHH	.	.	.	.	.
Chr5	20471541	20471718	AT5TE73750	.	+	HELITRONY1E	Helitron	RC	177	short	447	high	9253139	chromoarm	2843	no-CHH	no-CHH	.	.	.	.	.
Chr5	20480079	20480520	AT5TE73780	.	+	ATMU2	MuDR	DNA	441	short	64	medium	9261677	chromoarm	679	no-CHH	no-CHH	ExpressedAndAnnotated	20479590,20479607	20480987,20481078	+,+	transcript_id-"5ec9ba61-6186-4076-a9f2-8a9ee1e9d3f0|16",transcript_id-"d70df7c3-d7f4-475c-bc6f-8f6c8fe51235|49"
Chr5	20496986	20497324	AT5TE73840	.	-	HELITRONY1B	Helitron	RC	338	short	414	high	9278584	chromoarm	76	no-CHH	no-CHH	.	.	.	.	.
Chr5	20498210	20498558	AT5TE73845	.	+	HELITRONY1D	Helitron	RC	348	short	756	high	9279808	chromoarm	138	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	20501657	20501719	AT5TE73855	.	-	HELITRONY3	Helitron	RC	62	tiny	1399	high	9283255	chromoarm	46	no-CHH	no-CHH	.	.	.	.	.
Chr5	20501719	20501799	AT5TE73860	.	-	ATREP10D	Helitron	RC	80	tiny	1295	high	9283317	chromoarm	108	no-CHH	no-CHH	.	.	.	.	.
Chr5	20501799	20502514	AT5TE73865	.	-	HELITRONY1C	Helitron	RC	715	short	120	medium	9283397	chromoarm	188	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	20502514	20502624	AT5TE73870	.	-	BRODYAGA2	MuDR	DNA	110	short	525	high	9284112	chromoarm	903	no-CHH	no-CHH	.	.	.	.	.
Chr5	20506846	20508071	AT5TE73880	.	-	HELITRONY3	Helitron	RC	1225	short	1399	high	9288444	chromoarm	268	no-CHH	no-CHH	.	.	.	.	.
Chr5	20508071	20508118	AT5TE73885	.	+	ATREP15	Helitron	RC	47	tiny	1003	high	9289669	chromoarm	1263	no-CHH	no-CHH	.	.	.	.	.
Chr5	20508118	20508162	AT5TE73890	.	+	HELITRONY2	Helitron	RC	44	tiny	198	medium	9289716	chromoarm	1219	no-CHH	no-CHH	.	.	.	.	.
Chr5	20511149	20511626	AT5TE73900	.	+	HELITRONY3	Helitron	RC	477	short	1399	high	9292747	chromoarm	229	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	20519184	20519340	AT5TE73930	.	-	ATREP3	Helitron	RC	156	short	1439	high	9300782	chromoarm	751	no-CHH	no-CHH	.	.	.	.	.
Chr5	20519340	20519752	AT5TE73935	.	+	ARNOLDY2	MuDR	DNA	412	short	288	high	9300938	chromoarm	907	no-CHH	no-CHH	.	.	.	.	.
Chr5	20526731	20526874	AT5TE73960	.	-	VANDAL16	MuDR	DNA	143	short	42	low	9308329	chromoarm	500	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	20527138	20527756	AT5TE73965	.	-	HELITRONY1D	Helitron	RC	618	short	756	high	9308736	chromoarm	689	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	20533258	20533830	AT5TE73980	.	+	ATDNA2T9C	MuDR	DNA	572	short	242	high	9314856	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	20533830	20533904	AT5TE73985	.	+	ATREP19	.	DNA	74	tiny	189	medium	9315428	chromoarm	440	no-CHH	no-CHH	.	.	.	.	.
Chr5	20543498	20543652	AT5TE74020	.	+	ATHILA4C	Gypsy	LTR	154	short	206	high	9325096	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	20544985	20545821	AT5TE74025	.	-	ATREP15	Helitron	RC	836	short	1003	high	9326583	chromoarm	287	no-CHH	no-CHH	.	.	.	.	.
Chr5	20545821	20545847	AT5TE74030	.	+	ATREP4	Helitron	RC	26	tiny	832	high	9327419	chromoarm	1123	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	20545847	20546116	AT5TE74035	.	+	HELITRONY1E	Helitron	RC	269	short	447	high	9327445	chromoarm	1149	no-CHH	no-CHH	.	.	.	.	.
Chr5	20547912	20548238	AT5TE74040	.	+	ATLINE1_3A	L1	LINE	326	short	160	medium	9329510	chromoarm	3214	no-CHH	no-CHH	.	.	.	.	.
Chr5	20553509	20554151	AT5TE74050	.	+	ATREP5	Helitron	RC	642	short	624	high	9335107	chromoarm	968	no-CHH	no-CHH	.	.	.	.	.
Chr5	20558574	20559918	AT5TE74060	.	-	ATREP11	Helitron	RC	1344	short	841	high	9340172	chromoarm	110	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	20559918	20560149	AT5TE74065	.	+	ATREP10D	Helitron	RC	231	short	1295	high	9341516	chromoarm	460	no-CHH	no-CHH	.	.	.	.	.
Chr5	20561307	20561896	AT5TE74070	.	-	HELITRONY1E	Helitron	RC	589	short	447	high	9342905	chromoarm	137	no-CHH	no-CHH	.	.	.	.	.
Chr5	20571112	20571153	AT5TE74100	.	-	RathE3_cons	.	RathE3_cons	42	tiny	104	medium	9352709	chromoarm	0	.	.	.	.	.	.	.
Chr5	20579974	20580145	AT5TE74130	.	+	ATENSPM7	En-Spm	DNA	172	short	74	medium	9361571	chromoarm	123	.	.	.	.	.	.	.
Chr5	20582278	20582448	AT5TE74135	.	+	ATENSPM3	En-Spm	DNA	171	short	98	medium	9363875	chromoarm	106	.	.	.	.	.	.	.
Chr5	20592049	20592721	AT5TE74170	.	-	ATREP15	Helitron	RC	673	short	1003	high	9373646	chromoarm	395	.	.	.	.	.	.	.
Chr5	20592722	20592802	AT5TE74175	.	+	ATREP1	Helitron	RC	81	tiny	498	high	9374319	chromoarm	899	.	.	.	.	.	.	.
Chr5	20592803	20592910	AT5TE74180	.	-	ATREP3	Helitron	RC	108	short	1439	high	9374400	chromoarm	791	.	.	.	.	.	.	.
Chr5	20594493	20594796	AT5TE74185	.	+	SIMPLEHAT2	HAT	DNA	304	short	73	medium	9376090	chromoarm	233	.	.	.	.	.	.	.
Chr5	20594857	20597333	AT5TE74190	.	+	AT9TSD1	MuDR	DNA	2477	medium	55	medium	9376454	chromoarm	597	.	.	.	.	.	.	.
Chr5	20604453	20604494	AT5TE74220	.	-	RathE3_cons	.	RathE3_cons	42	tiny	104	medium	9386050	chromoarm	0	.	.	.	.	.	.	.
Chr5	20613316	20613487	AT5TE74250	.	+	ATENSPM7	En-Spm	DNA	172	short	74	medium	9394913	chromoarm	197	.	.	.	.	.	.	.
Chr5	20615620	20615790	AT5TE74255	.	+	ATENSPM3	En-Spm	DNA	171	short	98	medium	9397217	chromoarm	106	.	.	.	.	.	.	.
Chr5	20625391	20626063	AT5TE74290	.	-	ATREP15	Helitron	RC	673	short	1003	high	9406988	chromoarm	395	.	.	.	.	.	.	.
Chr5	20626064	20626252	AT5TE74295	.	-	ATREP3	Helitron	RC	189	short	1439	high	9407661	chromoarm	791	.	.	.	.	.	.	.
Chr5	20627835	20628138	AT5TE74300	.	+	SIMPLEHAT2	HAT	DNA	304	short	73	medium	9409432	chromoarm	233	.	.	.	.	.	.	.
Chr5	20628199	20630675	AT5TE74305	.	+	AT9TSD1	MuDR	DNA	2477	medium	55	medium	9409796	chromoarm	597	.	.	ExpressedAndAnnotated	20630623,20630623	20632142,20632250	+,+	transcript_id-"a16eb2a6-18b3-4b91-b914-538cd7482d78|8",transcript_id-"f0000aaf-31a0-4d25-a618-0f79ddb0314f|3"
Chr5	20628706	20628734	AT5TE74310	.	-	HELITRONY1E	Helitron	RC	29	tiny	447	high	9410303	chromoarm	1104	.	.	.	.	.	.	.
Chr5	20631774	20632292	AT5TE74320	.	+	ATHAT1	HAT	DNA	518	short	105	medium	9413372	chromoarm	1149	no-RdDM	no-RdDM	ExpressedAndAnnotated	20630623,20630623,20630630,20630645,20630646,20630662,20630669	20632142,20632250,20632136,20632090,20632207,20632090,20632002	+,+,+,+,+,+,+	transcript_id-"a16eb2a6-18b3-4b91-b914-538cd7482d78|8",transcript_id-"f0000aaf-31a0-4d25-a618-0f79ddb0314f|3",transcript_id-"9367d743-01f2-422b-b3c6-a312b5c81371|20",transcript_id-"84409361-35b6-4baa-8392-8ea0cd5deeef|7",transcript_id-"f3d10be2-9216-4fba-a6ce-bcdb53f56a12|108",transcript_id-"ccd552a9-1dcd-4d66-a204-786dd046a72f|7",transcript_id-"3129be12-0d8d-47ec-9f5b-b816c8b6be8a|5"
Chr5	20632292	20632708	AT5TE74325	.	+	HELITRONY3	Helitron	RC	416	short	1399	high	9413890	chromoarm	733	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	20634877	20635597	AT5TE74330	.	+	ATREP3	Helitron	RC	720	short	1439	high	9416475	chromoarm	375	no-CHH	no-CHH	.	.	.	.	.
Chr5	20635597	20635954	AT5TE74335	.	+	ATREP10A	Helitron	RC	357	short	279	high	9417195	chromoarm	28	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	20639104	20639225	AT5TE74345	.	-	ARNOLDY1	MuDR	DNA	121	short	237	high	9420702	chromoarm	1134	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	20639225	20640383	AT5TE74350	.	+	HELITRONY3	Helitron	RC	1158	short	1399	high	9420823	chromoarm	682	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	20640383	20640468	AT5TE74355	.	-	HELITRONY3	Helitron	RC	85	tiny	1399	high	9421981	chromoarm	597	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	20648838	20648861	AT5TE74380	.	+	HELITRONY3	Helitron	RC	23	tiny	1399	high	9430436	chromoarm	142	no-CHH	no-CHH	.	.	.	.	.
Chr5	20648861	20648931	AT5TE74385	.	+	HELITRONY1A	Helitron	RC	70	tiny	271	high	9430459	chromoarm	165	no-CHH	no-CHH	.	.	.	.	.
Chr5	20648931	20649627	AT5TE74390	.	+	HELITRONY1D	Helitron	RC	696	short	756	high	9430529	chromoarm	235	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	20649627	20649751	AT5TE74395	.	-	ARNOLDY1	MuDR	DNA	124	short	237	high	9431225	chromoarm	517	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	20668715	20668777	AT5TE74460	.	+	ATREP10A	Helitron	RC	62	tiny	279	high	9450313	chromoarm	447	no-CHH	no-CHH	.	.	.	.	.
Chr5	20668777	20669681	AT5TE74465	.	+	HELITRONY1D	Helitron	RC	904	short	756	high	9450375	chromoarm	509	no-CHH	no-CHH	.	.	.	.	.
Chr5	20669864	20670193	AT5TE74470	.	-	ATDNA12T3_2	.	DNA	329	short	660	high	9451462	chromoarm	1596	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	20673980	20674234	AT5TE74480	.	-	ATREP3	Helitron	RC	254	short	1439	high	9455578	chromoarm	1640	no-CHH	no-CHH	.	.	.	.	.
Chr5	20674234	20674821	AT5TE74485	.	-	ATREP2A	Helitron	RC	587	short	116	medium	9455832	chromoarm	1053	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	20674821	20674995	AT5TE74490	.	-	ATREP1	Helitron	RC	174	short	498	high	9456419	chromoarm	879	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	20677009	20677125	AT5TE74495	.	+	RathE1_cons	.	RathE1_cons	116	short	213	high	9458607	chromoarm	504	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	20680206	20680295	AT5TE74505	.	-	HELITRONY1E	Helitron	RC	89	tiny	447	high	9461804	chromoarm	200	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	20680303	20682655	AT5TE74510	.	-	ATREP3	Helitron	RC	2352	medium	1439	high	9461901	chromoarm	297	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	20682655	20682933	AT5TE74515	.	-	ATREP15	Helitron	RC	278	short	1003	high	9464253	chromoarm	518	no-CHH	no-CHH	.	.	.	.	.
Chr5	20684821	20685661	AT5TE74520	.	-	ATREP1	Helitron	RC	840	short	498	high	9466419	chromoarm	241	no-CHH	no-CHH	.	.	.	.	.
Chr5	20695443	20696425	AT5TE74560	.	+	ATMU6N1	MuDR	DNA	982	short	39	low	9477041	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	20698757	20699045	AT5TE74565	.	+	ATMU10	MuDR	DNA	288	short	87	medium	9480355	chromoarm	580	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	20712503	20712987	AT5TE74610	.	-	AT9TSD1	MuDR	DNA	484	short	55	medium	9494101	chromoarm	251	no-CHH	no-CHH	.	.	.	.	.
Chr5	20747343	20747664	AT5TE74740	.	+	ATMUN1	MuDR	DNA	321	short	107	medium	9528941	chromoarm	178	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	20749830	20749917	AT5TE74745	.	-	ATREP4	Helitron	RC	87	tiny	832	high	9531428	chromoarm	478	no-CHH	no-CHH	.	.	.	.	.
Chr5	20749917	20750455	AT5TE74750	.	-	ATREP15	Helitron	RC	538	short	1003	high	9531515	chromoarm	244	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	20750455	20750576	AT5TE74755	.	-	HELITRONY1E	Helitron	RC	121	short	447	high	9532053	chromoarm	123	no-CHH	no-CHH	.	.	.	.	.
Chr5	20753030	20753222	AT5TE74760	.	+	ATENSPM5	En-Spm	DNA	192	short	111	medium	9534628	chromoarm	158	no-CHH	no-CHH	ExpressedAndAnnotated	20753026	20755879	+	transcript_id-"b62bde77-5f36-4139-8751-7871cbfac986|8"
Chr5	20756612	20757130	AT5TE74770	.	-	ATREP3	Helitron	RC	518	short	1439	high	9538210	chromoarm	353	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	20757130	20757156	AT5TE74775	.	+	RP1_AT	.	DNA	26	tiny	87	medium	9538728	chromoarm	327	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	20775732	20775756	AT5TE74840	.	+	HELITRONY3	Helitron	RC	24	tiny	1399	high	9557330	chromoarm	97	no-CHH	no-CHH	.	.	.	.	.
Chr5	20775756	20776394	AT5TE74845	.	+	ATREP10B	Helitron	RC	638	short	491	high	9557354	chromoarm	121	no-CHH	no-CHH	.	.	.	.	.
Chr5	20776394	20777161	AT5TE74850	.	-	ATREP15	Helitron	RC	767	short	1003	high	9557992	chromoarm	470	no-CHH	no-CHH	.	.	.	.	.
Chr5	20777161	20777568	AT5TE74855	.	-	HELITRONY1E	Helitron	RC	407	short	447	high	9558759	chromoarm	63	no-CHH	no-CHH	.	.	.	.	.
Chr5	20797316	20797627	AT5TE74920	.	-	HELITRON4	Helitron	RC	311	short	199	medium	9578914	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	20802456	20802562	AT5TE74930	.	-	ATHATN4	HAT	DNA	106	short	56	medium	9584054	chromoarm	543	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr5	20802779	20802926	AT5TE74935	.	-	ATHATN7	HAT	DNA	147	short	71	medium	9584377	chromoarm	179	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	20829773	20830320	AT5TE75030	.	-	HELITRON1	Helitron	RC	547	short	130	medium	9611371	chromoarm	422	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	20834067	20834435	AT5TE75040	.	+	HELITRONY1E	Helitron	RC	368	short	447	high	9615665	chromoarm	601	no-CHH	no-CHH	.	.	.	.	.
Chr5	20855631	20856783	AT5TE75120	.	+	SIMPLEGUY1	Harbinger	DNA	1152	short	116	medium	9637229	chromoarm	913	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	20857445	20857771	AT5TE75125	.	+	HELITRONY1D	Helitron	RC	326	short	756	high	9639043	chromoarm	980	no-CHH	no-CHH	.	.	.	.	.
Chr5	20929217	20929324	AT5TE75390	.	+	HELITRON5	Helitron	RC	107	short	56	medium	9710815	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	20966887	20967554	AT5TE75530	.	+	ATIS112A	Harbinger	DNA	667	short	173	medium	9748485	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	20968486	20968757	AT5TE75535	.	+	ATIS112A	Harbinger	DNA	271	short	173	medium	9750084	chromoarm	502	no-CHH	no-CHH	.	.	.	.	.
Chr5	21003290	21003459	AT5TE75660	.	+	ATHAT1	HAT	DNA	169	short	105	medium	9784888	chromoarm	147	no-CHH	no-CHH	.	.	.	.	.
Chr5	21014191	21014634	AT5TE75700	.	+	VANDAL17	MuDR	DNA	443	short	178	medium	9795789	chromoarm	826	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	21015277	21015768	AT5TE75705	.	-	ATHATN10	HAT	DNA	491	short	48	low	9796875	chromoarm	1341	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	21015768	21016577	AT5TE75710	.	-	ATREP14	Helitron	RC	809	short	47	low	9797366	chromoarm	532	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	21016583	21016605	AT5TE75715	.	-	ATREP2A	Helitron	RC	22	tiny	116	medium	9798181	chromoarm	504	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	21031972	21032425	AT5TE75770	.	-	VANDAL17	MuDR	DNA	453	short	178	medium	9813570	chromoarm	0	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	21036610	21037317	AT5TE75780	.	+	ATREP4	Helitron	RC	707	short	832	high	9818208	chromoarm	164	no-CHH	no-CHH	.	.	.	.	.
Chr5	21043399	21043783	AT5TE75800	.	+	VANDAL17	MuDR	DNA	384	short	178	medium	9824997	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	21046023	21046650	AT5TE75805	.	+	HELITRONY1D	Helitron	RC	627	short	756	high	9827621	chromoarm	1666	no-CHH	no-CHH	.	.	.	.	.
Chr5	21074737	21075531	AT5TE75900	.	-	ATREP15	Helitron	RC	794	short	1003	high	9856335	chromoarm	606	no-CHH	no-CHH	.	.	.	.	.
Chr5	21076551	21077120	AT5TE75905	.	+	VANDAL17	MuDR	DNA	569	short	178	medium	9858149	chromoarm	22	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	21077120	21077349	AT5TE75910	.	-	ATHPOGON2	Pogo	DNA	229	short	27	low	9858718	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	21084738	21084987	AT5TE75940	.	-	ATMUN1	MuDR	DNA	249	short	107	medium	9866336	chromoarm	612	no-CHH	no-CHH	.	.	.	.	.
Chr5	21096449	21096512	AT5TE75980	.	-	ATDNA2T9C	MuDR	DNA	63	tiny	242	high	9878047	chromoarm	689	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	21096512	21097028	AT5TE75985	.	+	ATREP19	.	DNA	516	short	189	medium	9878110	chromoarm	173	no-CHH	no-RdDM	.	.	.	.	.
Chr5	21099995	21100068	AT5TE75995	.	-	ATREP11A	Helitron	RC	73	tiny	95	medium	9881593	chromoarm	1054	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	21100068	21100835	AT5TE76000	.	-	ATREP4	Helitron	RC	767	short	832	high	9881666	chromoarm	287	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	21100835	21101264	AT5TE76005	.	-	ATREP15	Helitron	RC	429	short	1003	high	9882433	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	21109589	21110219	AT5TE76030	.	+	HELITRONY3	Helitron	RC	630	short	1399	high	9891187	chromoarm	496	no-CHH	no-CHH	.	.	.	.	.
Chr5	21123098	21123539	AT5TE76080	.	+	ATCOPIA58	Copia	LTR	441	short	18	low	9904696	chromoarm	282	no-CHH	no-CHH	.	.	.	.	.
Chr5	21148157	21148774	AT5TE76170	.	+	ATCOPIA71	Copia	LTR	617	short	9	low	9929755	chromoarm	3674	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	21151002	21151717	AT5TE76175	.	+	ATREP10D	Helitron	RC	715	short	1295	high	9932600	chromoarm	731	no-CHH	no-CHH	.	.	.	.	.
Chr5	21157048	21157276	AT5TE76185	.	-	ATLINEIII	L1	LINE	228	short	196	medium	9938646	chromoarm	3307	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr5	21157276	21158641	AT5TE76190	.	-	ATLINE2	L1	LINE	1365	short	138	medium	9938874	chromoarm	3474	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	21158641	21158663	AT5TE76195	.	-	ATLINE2	L1	LINE	22	tiny	138	medium	9940239	chromoarm	3452	no-RdDM	DCL3-RdDM	LowExpressed	.	.	.	.
Chr5	21160606	21161072	AT5TE76200	.	-	ATREP19	.	DNA	467	short	189	medium	9942203	chromoarm	1043	.	.	.	.	.	.	.
Chr5	21161072	21161124	AT5TE76205	.	+	ATMUN1	MuDR	DNA	52	tiny	107	medium	9942670	chromoarm	991	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	21162771	21163127	AT5TE76210	.	-	ATCOPIA68	Copia	LTR	356	short	43	low	9944369	chromoarm	0	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	21163127	21163160	AT5TE76215	.	-	ATCOPIA56	Copia	LTR	33	tiny	16	low	9944725	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	21165834	21166138	AT5TE76220	.	-	ATSINE4	.	SINE	304	short	98	medium	9947432	chromoarm	1104	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	21174416	21174534	AT5TE76250	.	+	ATREP7	Helitron	RC	118	short	164	medium	9956014	chromoarm	463	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	21190822	21190903	AT5TE76310	.	+	HELITRONY1B	Helitron	RC	81	tiny	414	high	9972420	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	21191363	21191865	AT5TE76315	.	+	ATREP11	Helitron	RC	502	short	841	high	9972961	chromoarm	60	no-CHH	no-CHH	.	.	.	.	.
Chr5	21193267	21194469	AT5TE76320	.	+	HELITRONY3	Helitron	RC	1202	short	1399	high	9974865	chromoarm	670	no-CHH	no-CHH	.	.	.	.	.
Chr5	21194469	21194546	AT5TE76325	.	+	BRODYAGA1	MuDR	DNA	77	tiny	251	high	9976067	chromoarm	593	no-CHH	no-CHH	.	.	.	.	.
Chr5	21212009	21212059	AT5TE76380	.	-	ATREP15	Helitron	RC	50	tiny	1003	high	9993607	chromoarm	375	no-CHH	no-CHH	.	.	.	.	.
Chr5	21212059	21212175	AT5TE76385	.	+	ATDNA2T9C	MuDR	DNA	116	short	242	high	9993657	chromoarm	425	no-RdDM	no-CHH	.	.	.	.	.
Chr5	21212175	21212936	AT5TE76390	.	-	ARNOLDY2	MuDR	DNA	761	short	288	high	9993773	chromoarm	184	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	21214902	21215350	AT5TE76395	.	+	ATLINE1A	L1	LINE	448	short	289	high	9996500	chromoarm	345	no-CHH	no-CHH	.	.	.	.	.
Chr5	21242984	21243125	AT5TE76490	.	-	ATENSPM2	En-Spm	DNA	141	short	114	medium	10024582	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	21247172	21247309	AT5TE76500	.	+	ROMANIAT5	Copia	LTR	137	short	49	low	10028770	chromoarm	286	no-CHH	no-CHH	.	.	.	.	.
Chr5	21263816	21264016	AT5TE76560	.	+	ATLINEIII	L1	LINE	200	short	196	medium	10045414	chromoarm	264	no-CHH	no-CHH	.	.	.	.	.
Chr5	21270614	21270707	AT5TE76580	.	+	BRODYAGA1A	MuDR	DNA	93	tiny	586	high	10052212	chromoarm	2241	no-CHH	no-CHH	.	.	.	.	.
Chr5	21270707	21271225	AT5TE76585	.	+	HELITRONY1D	Helitron	RC	518	short	756	high	10052305	chromoarm	1723	no-CHH	no-CHH	.	.	.	.	.
Chr5	21303760	21303811	AT5TE76700	.	-	ATREP15	Helitron	RC	51	tiny	1003	high	10085358	chromoarm	1094	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	21303811	21304539	AT5TE76705	.	-	HELITRONY1B	Helitron	RC	728	short	414	high	10085409	chromoarm	1145	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr5	21304539	21304670	AT5TE76710	.	-	ATREP15	Helitron	RC	131	short	1003	high	10086137	chromoarm	1873	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr5	21305534	21305880	AT5TE76715	.	-	HELITRONY1D	Helitron	RC	347	short	756	high	10087131	chromoarm	1315	.	.	.	.	.	.	.
Chr5	21314160	21314260	AT5TE76740	.	-	ATLINE1A	L1	LINE	100	short	289	high	10095758	chromoarm	285	no-CHH	no-CHH	.	.	.	.	.
Chr5	21314654	21314684	AT5TE76745	.	+	ATREP4	Helitron	RC	30	tiny	832	high	10096252	chromoarm	779	no-RdDM	no-CHH	.	.	.	.	.
Chr5	21314684	21316789	AT5TE76750	.	-	ATREP15	Helitron	RC	2105	medium	1003	high	10096282	chromoarm	809	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	21316789	21316871	AT5TE76755	.	+	ATREP15	Helitron	RC	82	tiny	1003	high	10098387	chromoarm	1343	no-CHH	no-CHH	.	.	.	.	.
Chr5	21357120	21357216	AT5TE76900	.	-	ATREP10B	Helitron	RC	96	tiny	491	high	10138718	chromoarm	117	no-CHH	no-CHH	.	.	.	.	.
Chr5	21357216	21357721	AT5TE76905	.	-	HELITRONY1D	Helitron	RC	505	short	756	high	10138814	chromoarm	213	no-CHH	no-CHH	.	.	.	.	.
Chr5	21357721	21357754	AT5TE76910	.	+	ATREP10D	Helitron	RC	33	tiny	1295	high	10139319	chromoarm	718	no-CHH	no-CHH	.	.	.	.	.
Chr5	21367212	21367295	AT5TE76950	.	+	ATCOPIA95	Copia	LTR	83	tiny	72	medium	10148810	chromoarm	349	no-CHH	no-CHH	.	.	.	.	.
Chr5	21367295	21368374	AT5TE76955	.	-	HELITRONY3	Helitron	RC	1079	short	1399	high	10148893	chromoarm	432	no-CHH	no-CHH	.	.	.	.	.
Chr5	21385405	21385563	AT5TE77010	.	+	ATTIRX1D	.	DNA	158	short	28	low	10167003	chromoarm	610	no-CHH	no-CHH	.	.	.	.	.
Chr5	21407008	21408632	AT5TE77090	.	-	HELITRONY3	Helitron	RC	1624	short	1399	high	10188606	chromoarm	2363	no-CHH	no-CHH	.	.	.	.	.
Chr5	21422118	21422242	AT5TE77140	.	+	BRODYAGA1A	MuDR	DNA	124	short	586	high	10203716	chromoarm	573	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	21422242	21422403	AT5TE77145	.	-	BRODYAGA1A	MuDR	DNA	161	short	586	high	10203840	chromoarm	697	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	21423678	21424168	AT5TE77150	.	-	BRODYAGA1	MuDR	DNA	490	short	251	high	10205276	chromoarm	2133	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	21425192	21425220	AT5TE77155	.	+	ATREP11	Helitron	RC	28	tiny	841	high	10206790	chromoarm	2970	no-CHH	no-RdDM	.	.	.	.	.
Chr5	21425220	21425492	AT5TE77160	.	+	DT1	Mariner	DNA	272	short	123	medium	10206818	chromoarm	2698	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	21425492	21425577	AT5TE77165	.	+	ATREP11	Helitron	RC	85	tiny	841	high	10207090	chromoarm	2613	no-RdDM	no-CHH	.	.	.	.	.
Chr5	21425735	21426170	AT5TE77170	.	-	HELITRONY1A	Helitron	RC	435	short	271	high	10207333	chromoarm	2020	no-RdDM	no-CHH	.	.	.	.	.
Chr5	21437646	21437718	AT5TE77210	.	-	ATCOPIA68	Copia	LTR	72	tiny	43	low	10219244	chromoarm	0	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr5	21439778	21439806	AT5TE77215	.	+	ATREP19	.	DNA	28	tiny	189	medium	10221376	chromoarm	1416	no-CHH	no-CHH	.	.	.	.	.
Chr5	21439806	21440303	AT5TE77220	.	+	ATREP1	Helitron	RC	497	short	498	high	10221404	chromoarm	1444	no-CHH	no-CHH	.	.	.	.	.
Chr5	21440303	21440399	AT5TE77225	.	+	ATDNA2T9C	MuDR	DNA	96	tiny	242	high	10221901	chromoarm	1941	no-CHH	no-CHH	.	.	.	.	.
Chr5	21447257	21447881	AT5TE77250	.	+	ATREP15	Helitron	RC	624	short	1003	high	10228855	chromoarm	1060	no-CHH	no-CHH	.	.	.	.	.
Chr5	21455586	21456136	AT5TE77280	.	-	ATREP15	Helitron	RC	550	short	1003	high	10237184	chromoarm	933	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	21529706	21529727	AT5TE77550	.	+	HELITRONY1E	Helitron	RC	21	tiny	447	high	10311304	chromoarm	0	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	21529727	21530015	AT5TE77555	.	-	ATREP3	Helitron	RC	288	short	1439	high	10311325	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	21530015	21530078	AT5TE77560	.	+	ATREP3	Helitron	RC	63	tiny	1439	high	10311613	chromoarm	0	no-RdDM	no-CHH	.	.	.	.	.
Chr5	21530078	21532125	AT5TE77565	.	+	ATREP3	Helitron	RC	2047	medium	1439	high	10311676	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	21532125	21532191	AT5TE77570	.	-	HELITRONY3	Helitron	RC	66	tiny	1399	high	10313723	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	21532191	21532238	AT5TE77575	.	+	HELITRONY1B	Helitron	RC	47	tiny	414	high	10313789	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	21542893	21546691	AT5TE77610	.	+	ATCOPIA85	Copia	LTR	3798	medium	7	low	10324491	chromoarm	2403	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	21546691	21546721	AT5TE77615	.	+	ATCOPIA73	Copia	LTR	30	tiny	3	low	10328289	chromoarm	2506	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	21556083	21556320	AT5TE77640	.	-	HELITRON1	Helitron	RC	237	short	130	medium	10337681	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	21560035	21560188	AT5TE77650	.	-	HELITRONY1D	Helitron	RC	153	short	756	high	10341633	chromoarm	837	no-CHH	no-CHH	.	.	.	.	.
Chr5	21574826	21574975	AT5TE77700	.	+	ATCOPIA84	Copia	LTR	149	short	10	low	10356424	chromoarm	542	no-CHH	no-CHH	.	.	.	.	.
Chr5	21581769	21582610	AT5TE77730	.	+	ATREP11	Helitron	RC	841	short	841	high	10363367	chromoarm	302	no-CHH	no-CHH	.	.	.	.	.
Chr5	21583960	21584042	AT5TE77735	.	-	ATREP4	Helitron	RC	82	tiny	832	high	10365558	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	21584042	21584176	AT5TE77740	.	-	ATREP15	Helitron	RC	134	short	1003	high	10365640	chromoarm	82	no-CHH	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	21584176	21584204	AT5TE77745	.	-	ATREP3	Helitron	RC	28	tiny	1439	high	10365774	chromoarm	216	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	21584204	21585100	AT5TE77750	.	+	ATREP15	Helitron	RC	896	short	1003	high	10365802	chromoarm	244	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	21585100	21585216	AT5TE77755	.	+	ATREP5	Helitron	RC	116	short	624	high	10366698	chromoarm	381	no-CHH	no-CHH	.	.	.	.	.
Chr5	21630664	21631482	AT5TE77920	.	-	HELITRONY3	Helitron	RC	818	short	1399	high	10412262	chromoarm	1319	no-CHH	no-CHH	.	.	.	.	.
Chr5	21630760	21631338	AT5TE77925	.	-	ATREP10B	Helitron	RC	578	short	491	high	10412358	chromoarm	1463	no-CHH	no-CHH	.	.	.	.	.
Chr5	21664517	21665337	AT5TE78040	.	-	ATREP3	Helitron	RC	820	short	1439	high	10446115	chromoarm	1134	no-CHH	no-CHH	.	.	.	.	.
Chr5	21666647	21667406	AT5TE78045	.	-	AT9TSD1	MuDR	DNA	759	short	55	medium	10448245	chromoarm	532	no-CHH	no-CHH	.	.	.	.	.
Chr5	21668186	21668894	AT5TE78050	.	+	ATREP4	Helitron	RC	708	short	832	high	10449784	chromoarm	140	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	21670111	21670349	AT5TE78055	.	-	ATDNATA1	Mariner	DNA	238	short	28	low	10451709	chromoarm	2065	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	21670349	21670675	AT5TE78060	.	-	HELITRON4	Helitron	RC	326	short	199	medium	10451947	chromoarm	2303	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	21677109	21677210	AT5TE78080	.	-	ATDNAI27T9C	MuDR	DNA	102	short	108	medium	10458706	chromoarm	412	.	.	LowExpressed	.	.	.	.
Chr5	21695800	21695862	AT5TE78150	.	-	ATREP3	Helitron	RC	62	tiny	1439	high	10477398	chromoarm	2427	no-CHH	no-CHH	.	.	.	.	.
Chr5	21695862	21696468	AT5TE78155	.	-	HELITRONY3	Helitron	RC	606	short	1399	high	10477460	chromoarm	2489	no-CHH	no-CHH	.	.	.	.	.
Chr5	21696916	21697095	AT5TE78160	.	+	ATN9_1	MuDR	DNA	180	short	65	medium	10478513	chromoarm	3422	.	.	.	.	.	.	.
Chr5	21698962	21700118	AT5TE78165	.	-	ATREP10D	Helitron	RC	1156	short	1295	high	10480560	chromoarm	399	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	21712896	21713314	AT5TE78210	.	-	HELITRONY1D	Helitron	RC	418	short	756	high	10494494	chromoarm	505	no-CHH	no-CHH	.	.	.	.	.
Chr5	21713328	21713580	AT5TE78215	.	+	ATENSPM1	En-Spm	DNA	252	short	30	low	10494926	chromoarm	435	no-CHH	no-CHH	.	.	.	.	.
Chr5	21724823	21725128	AT5TE78250	.	+	ATREP5	Helitron	RC	305	short	624	high	10506421	chromoarm	202	no-CHH	no-CHH	.	.	.	.	.
Chr5	21737956	21738066	AT5TE78300	.	-	ATCOPIA61	Copia	LTR	110	short	12	low	10519554	chromoarm	782	no-CHH	no-CHH	.	.	.	.	.
Chr5	21742174	21742640	AT5TE78310	.	-	BRODYAGA1	MuDR	DNA	466	short	251	high	10523772	chromoarm	92	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	21771125	21771611	AT5TE78420	.	-	BRODYAGA2	MuDR	DNA	486	short	525	high	10552723	chromoarm	256	no-CHH	no-CHH	.	.	.	.	.
Chr5	21775178	21775277	AT5TE78430	.	-	ATREP4	Helitron	RC	99	tiny	832	high	10556776	chromoarm	367	no-CHH	no-CHH	.	.	.	.	.
Chr5	21775277	21775759	AT5TE78435	.	-	HELITRONY1C	Helitron	RC	482	short	120	medium	10556875	chromoarm	466	no-CHH	no-CHH	.	.	.	.	.
Chr5	21775759	21775787	AT5TE78440	.	-	ATREP3	Helitron	RC	28	tiny	1439	high	10557357	chromoarm	948	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	21775787	21775821	AT5TE78445	.	-	ATREP3	Helitron	RC	34	tiny	1439	high	10557385	chromoarm	976	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	21775821	21777096	AT5TE78450	.	-	ATREP3	Helitron	RC	1275	short	1439	high	10557419	chromoarm	10	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	21777096	21777137	AT5TE78455	.	+	ATREP5	Helitron	RC	41	tiny	624	high	10558694	chromoarm	0	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	21778130	21778183	AT5TE78460	.	+	BRODYAGA2	MuDR	DNA	53	tiny	525	high	10559728	chromoarm	688	no-CHH	no-CHH	.	.	.	.	.
Chr5	21778183	21778996	AT5TE78465	.	+	ATREP11	Helitron	RC	813	short	841	high	10559781	chromoarm	64	no-CHH	no-CHH	.	.	.	.	.
Chr5	21785659	21785808	AT5TE78480	.	+	TNAT1A	.	DNA	149	short	162	medium	10567257	chromoarm	190	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	21803123	21803358	AT5TE78540	.	+	ATREP5	Helitron	RC	235	short	624	high	10584721	chromoarm	577	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	21803887	21804402	AT5TE78545	.	-	HELITRONY3	Helitron	RC	515	short	1399	high	10585485	chromoarm	1006	no-RdDM	DCL3-RdDM	.	.	.	.	.
Chr5	21804402	21804509	AT5TE78550	.	-	ARNOLDY2	MuDR	DNA	107	short	288	high	10586000	chromoarm	899	no-CHH	no-CHH	.	.	.	.	.
Chr5	21808685	21808786	AT5TE78560	.	-	VANDAL6	MuDR	DNA	101	short	89	medium	10590283	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	21811210	21811528	AT5TE78565	.	-	ATREP6	Helitron	RC	318	short	181	medium	10592808	chromoarm	104	no-CHH	no-CHH	.	.	.	.	.
Chr5	21814663	21814736	AT5TE78575	.	+	ATCOPIA13	Copia	LTR	73	tiny	35	low	10596261	chromoarm	0	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	21815389	21815567	AT5TE78580	.	+	ATCOPIA13	Copia	LTR	178	short	35	low	10596987	chromoarm	481	PolIV-and-RDR6-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	21832303	21834623	AT5TE78640	.	-	TA11	L1	LINE	2320	medium	157	medium	10613901	chromoarm	2445	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	21835233	21835270	AT5TE78645	.	-	TA11	L1	LINE	37	tiny	157	medium	10616831	chromoarm	4547	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	21838067	21838394	AT5TE78655	.	+	ATREP11	Helitron	RC	327	short	841	high	10619665	chromoarm	1423	no-CHH	no-CHH	.	.	.	.	.
Chr5	21838394	21839436	AT5TE78660	.	+	ATREP3	Helitron	RC	1042	short	1439	high	10619992	chromoarm	381	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	21841876	21841925	AT5TE78665	.	+	ATREP15	Helitron	RC	49	tiny	1003	high	10623474	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	21841925	21842942	AT5TE78670	.	-	ATREP10B	Helitron	RC	1017	short	491	high	10623523	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	21842942	21843312	AT5TE78675	.	+	ATREP15	Helitron	RC	370	short	1003	high	10624540	chromoarm	188	no-CHH	no-CHH	.	.	.	.	.
Chr5	21843312	21843435	AT5TE78680	.	-	BRODYAGA2	MuDR	DNA	123	short	525	high	10624910	chromoarm	65	no-CHH	no-CHH	.	.	.	.	.
Chr5	21843435	21843635	AT5TE78685	.	-	ATREP10D	Helitron	RC	200	short	1295	high	10625033	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	21844884	21845028	AT5TE78690	.	-	SIMPLEHAT1	HAT	DNA	144	short	56	medium	10626482	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	21851492	21852224	AT5TE78710	.	+	ATCOPIA16	Copia	LTR	732	short	12	low	10633090	chromoarm	0	no-CHH	no-CHH	ExpressedAndAnnotated	21851605,21851605,21851605	21852309,21852822,21852885	+,+,+	transcript_id-"7dcd1157-98c9-40ac-abf9-fbcf086fbdc9|35",transcript_id-"e0e9ae70-012f-4da0-8bfe-520e54926ab8|8",transcript_id-"37058263-1bac-4f91-888d-fce69eafaaa3|9"
Chr5	21860737	21860869	AT5TE78740	.	-	HELITRONY3A	Helitron	RC	132	short	49	low	10642335	chromoarm	65	no-CHH	no-CHH	.	.	.	.	.
Chr5	21870157	21870640	AT5TE78770	.	-	VANDAL17	MuDR	DNA	483	short	178	medium	10651755	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	21870640	21870733	AT5TE78775	.	-	VANDAL17	MuDR	DNA	93	tiny	178	medium	10652238	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	21872983	21873104	AT5TE78780	.	-	LIMPET1	MuDR	DNA	121	short	116	medium	10654581	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	21883443	21883945	AT5TE78820	.	+	ATDNA2T9C	MuDR	DNA	502	short	242	high	10665041	chromoarm	310	no-CHH	no-CHH	.	.	.	.	.
Chr5	21883945	21884004	AT5TE78825	.	+	ATHPOGO	Pogo	DNA	59	tiny	25	low	10665543	chromoarm	812	no-CHH	no-CHH	.	.	.	.	.
Chr5	21889701	21890382	AT5TE78840	.	+	ATREP3	Helitron	RC	681	short	1439	high	10671299	chromoarm	260	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	21892202	21892349	AT5TE78845	.	+	ATENSPM5	En-Spm	DNA	147	short	111	medium	10673800	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	21896709	21896906	AT5TE78855	.	-	ATLINE1_1	L1	LINE	197	short	61	medium	10678307	chromoarm	257	no-CHH	no-CHH	.	.	.	.	.
Chr5	21898758	21899198	AT5TE78860	.	-	ATREP3	Helitron	RC	440	short	1439	high	10680356	chromoarm	169	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	21924565	21924768	AT5TE78950	.	-	ATTIRTA1	Tc1	DNA	203	short	95	medium	10706163	chromoarm	1031	no-CHH	no-CHH	.	.	.	.	.
Chr5	21924983	21925453	AT5TE78955	.	+	ATLINEIII	L1	LINE	470	short	196	medium	10706581	chromoarm	530	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	21927566	21927893	AT5TE78960	.	-	HELITRONY1D	Helitron	RC	327	short	756	high	10709164	chromoarm	323	no-CHH	no-CHH	.	.	.	.	.
Chr5	21928494	21928636	AT5TE78965	.	-	ATCOPIA65A	Copia	LTR	142	short	9	low	10710092	chromoarm	210	no-CHH	no-CHH	.	.	.	.	.
Chr5	21931330	21931441	AT5TE78970	.	-	ATLINE1_3A	L1	LINE	111	short	160	medium	10712928	chromoarm	693	no-CHH	no-CHH	.	.	.	.	.
Chr5	21935232	21935255	AT5TE78980	.	+	ATREP4	Helitron	RC	23	tiny	832	high	10716830	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	21935255	21935790	AT5TE78985	.	-	ATREP1	Helitron	RC	535	short	498	high	10716853	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	21935790	21935825	AT5TE78990	.	+	ATREP4	Helitron	RC	35	tiny	832	high	10717388	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	21969038	21969808	AT5TE79110	.	+	TAG3N1	HAT	DNA	770	short	97	medium	10750636	chromoarm	1204	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	21997343	21997822	AT5TE79210	.	+	ATREP4	Helitron	RC	479	short	832	high	10778941	chromoarm	267	no-CHH	no-CHH	.	.	.	.	.
Chr5	21997822	21997913	AT5TE79215	.	-	ATREP15	Helitron	RC	91	tiny	1003	high	10779420	chromoarm	746	no-CHH	no-CHH	.	.	.	.	.
Chr5	22002016	22006884	AT5TE79225	.	-	ATCOPIA22	Copia	LTR	4868	medium	14	low	10783614	chromoarm	1727	no-RdDM	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	22006681	22004891	-	transcript_id-"0a78bd75-e927-4b3d-85ed-11c32f5a54d2|5"
Chr5	22012279	22012692	AT5TE79235	.	-	ATREP11	Helitron	RC	413	short	841	high	10793877	chromoarm	524	no-CHH	no-CHH	.	.	.	.	.
Chr5	22020551	22020974	AT5TE79260	.	-	ATREP10D	Helitron	RC	423	short	1295	high	10802149	chromoarm	2364	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	22020974	22021050	AT5TE79265	.	+	ATREP1	Helitron	RC	76	tiny	498	high	10802572	chromoarm	2288	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	22021050	22022597	AT5TE79270	.	+	ATREP1	Helitron	RC	1547	short	498	high	10802648	chromoarm	741	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	22068548	22069913	AT5TE79440	.	+	ATREP3	Helitron	RC	1365	short	1439	high	10850146	chromoarm	221	no-CHH	no-CHH	.	.	.	.	.
Chr5	22069913	22069977	AT5TE79445	.	+	ATREP11	Helitron	RC	64	tiny	841	high	10851511	chromoarm	157	no-CHH	no-CHH	.	.	.	.	.
Chr5	22093016	22093513	AT5TE79530	.	-	ATIS112A	Harbinger	DNA	497	short	173	medium	10874614	chromoarm	733	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	22094408	22094596	AT5TE79535	.	-	ATCOPIA87	Copia	LTR	188	short	19	low	10876006	chromoarm	0	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	22095202	22095583	AT5TE79540	.	+	BRODYAGA2	MuDR	DNA	381	short	525	high	10876800	chromoarm	220	no-CHH	no-CHH	.	.	.	.	.
Chr5	22123765	22124243	AT5TE79640	.	+	ATREP10D	Helitron	RC	478	short	1295	high	10905363	chromoarm	430	no-CHH	no-CHH	.	.	.	.	.
Chr5	22129300	22129440	AT5TE79650	.	+	ATHILA6A	Gypsy	LTR	140	short	247	high	10910898	chromoarm	1880	no-CHH	no-CHH	.	.	.	.	.
Chr5	22137035	22138086	AT5TE79680	.	-	SIMPLEGUY1	Harbinger	DNA	1051	short	116	medium	10918633	chromoarm	3471	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	22149230	22149271	AT5TE79720	.	+	ATREP10D	Helitron	RC	41	tiny	1295	high	10930828	chromoarm	141	no-CHH	no-CHH	.	.	.	.	.
Chr5	22149271	22149397	AT5TE79725	.	-	BRODYAGA2	MuDR	DNA	126	short	525	high	10930869	chromoarm	182	no-CHH	no-CHH	.	.	.	.	.
Chr5	22149397	22150779	AT5TE79730	.	+	HELITRONY1E	Helitron	RC	1382	short	447	high	10930995	chromoarm	308	no-CHH	no-CHH	.	.	.	.	.
Chr5	22150779	22150954	AT5TE79735	.	-	HELITRONY3	Helitron	RC	175	short	1399	high	10932377	chromoarm	1690	no-CHH	no-CHH	.	.	.	.	.
Chr5	22150954	22151076	AT5TE79740	.	+	ATREP15	Helitron	RC	122	short	1003	high	10932552	chromoarm	1704	no-CHH	no-CHH	.	.	.	.	.
Chr5	22159518	22160621	AT5TE79770	.	-	ATREP10D	Helitron	RC	1103	short	1295	high	10941116	chromoarm	38	no-CHH	no-CHH	.	.	.	.	.
Chr5	22163972	22164227	AT5TE79780	.	-	ATIS112A	Harbinger	DNA	255	short	173	medium	10945570	chromoarm	1756	no-CHH	no-CHH	.	.	.	.	.
Chr5	22166805	22167197	AT5TE79785	.	-	ARNOLDY2	MuDR	DNA	392	short	288	high	10948403	chromoarm	438	no-CHH	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	22179146	22179721	AT5TE79820	.	-	ATREP10D	Helitron	RC	575	short	1295	high	10960744	chromoarm	758	no-CHH	no-CHH	.	.	.	.	.
Chr5	22208544	22208619	AT5TE79930	.	+	ATREP10B	Helitron	RC	75	tiny	491	high	10990142	chromoarm	1292	no-CHH	no-CHH	.	.	.	.	.
Chr5	22208632	22209289	AT5TE79935	.	-	ATREP5	Helitron	RC	657	short	624	high	10990230	chromoarm	622	no-CHH	no-CHH	.	.	.	.	.
Chr5	22230696	22230805	AT5TE80010	.	-	ARNOLDY2	MuDR	DNA	109	short	288	high	11012294	chromoarm	196	no-CHH	no-CHH	.	.	.	.	.
Chr5	22230805	22232315	AT5TE80015	.	-	ATREP3	Helitron	RC	1510	short	1439	high	11012403	chromoarm	0	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	22232315	22232349	AT5TE80020	.	-	ATREP11	Helitron	RC	34	tiny	841	high	11013913	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	22253699	22254261	AT5TE80100	.	-	ATREP10A	Helitron	RC	562	short	279	high	11035297	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	22259546	22261012	AT5TE80110	.	-	ATREP10D	Helitron	RC	1466	short	1295	high	11041144	chromoarm	395	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	22261012	22261202	AT5TE80115	.	-	BRODYAGA2	MuDR	DNA	190	short	525	high	11042610	chromoarm	205	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr5	22261202	22261397	AT5TE80120	.	-	HELITRONY3	Helitron	RC	195	short	1399	high	11042800	chromoarm	10	no-CHH	no-CHH	.	.	.	.	.
Chr5	22267175	22267286	AT5TE80140	.	-	HELITRONY3	Helitron	RC	111	short	1399	high	11048773	chromoarm	437	no-CHH	no-CHH	.	.	.	.	.
Chr5	22267287	22267637	AT5TE80145	.	+	ATTIRX1B	.	DNA	350	short	44	low	11048885	chromoarm	549	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	22270798	22271184	AT5TE80155	.	-	HELITRON4	Helitron	RC	386	short	199	medium	11052396	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	22322171	22322684	AT5TE80340	.	+	HELITRON4	Helitron	RC	513	short	199	medium	11103769	chromoarm	0	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	22325651	22325826	AT5TE80350	.	-	ATRE1	Copia	LTR	175	short	22	low	11107249	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	22331244	22331542	AT5TE80370	.	+	ATENSPM5	En-Spm	DNA	298	short	111	medium	11112842	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	22334934	22334988	AT5TE80380	.	-	ATREP2A	Helitron	RC	54	tiny	116	medium	11116532	chromoarm	2756	no-CHH	DCL3-RdDM	.	.	.	.	.
Chr5	22334988	22335634	AT5TE80385	.	-	ATREP2	Helitron	RC	646	short	164	medium	11116586	chromoarm	2110	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	22335634	22335769	AT5TE80390	.	-	ATREP1	Helitron	RC	135	short	498	high	11117232	chromoarm	1975	no-CHH	no-CHH	.	.	.	.	.
Chr5	22349705	22349826	AT5TE80440	.	-	VANDAL5	MuDR	DNA	121	short	85	medium	11131303	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	22351351	22351419	AT5TE80445	.	-	ATENSPM2	En-Spm	DNA	68	tiny	114	medium	11132949	chromoarm	156	no-CHH	no-CHH	.	.	.	.	.
Chr5	22353077	22353122	AT5TE80450	.	-	ATHPOGON3	Pogo	DNA	45	tiny	118	medium	11134675	chromoarm	19	no-CHH	no-CHH	.	.	.	.	.
Chr5	22353122	22353857	AT5TE80455	.	-	HELITRONY1E	Helitron	RC	735	short	447	high	11134720	chromoarm	64	no-CHH	no-CHH	.	.	.	.	.
Chr5	22353870	22354252	AT5TE80460	.	+	ATREP10D	Helitron	RC	382	short	1295	high	11135468	chromoarm	812	no-CHH	no-CHH	.	.	.	.	.
Chr5	22366985	22367210	AT5TE80510	.	-	TSCL	.	LINE?	226	short	81	medium	11148582	chromoarm	659	.	.	.	.	.	.	.
Chr5	22377625	22377786	AT5TE80550	.	-	ATCOPIA94	Copia	LTR	161	short	39	low	11159223	chromoarm	636	no-CHH	no-CHH	.	.	.	.	.
Chr5	22429616	22430228	AT5TE80740	.	-	HELITRONY1A	Helitron	RC	612	short	271	high	11211214	chromoarm	160	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	22463283	22464157	AT5TE80860	.	+	ATREP2A	Helitron	RC	874	short	116	medium	11244881	chromoarm	592	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	22464157	22464201	AT5TE80865	.	+	ATREP2A	Helitron	RC	44	tiny	116	medium	11245755	chromoarm	548	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	22464201	22464428	AT5TE80870	.	+	ATREP14	Helitron	RC	227	short	47	low	11245799	chromoarm	321	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	22491500	22492416	AT5TE80970	.	+	ATREP10A	Helitron	RC	916	short	279	high	11273098	chromoarm	313	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	22492416	22492824	AT5TE80975	.	-	ATREP10C	Helitron	RC	408	short	123	medium	11274014	chromoarm	1229	no-CHH	no-CHH	.	.	.	.	.
Chr5	22500560	22500599	AT5TE81000	.	-	ATREP15	Helitron	RC	39	tiny	1003	high	11282158	chromoarm	17	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	22500599	22501556	AT5TE81005	.	-	ATREP3	Helitron	RC	957	short	1439	high	11282197	chromoarm	56	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	22505720	22505836	AT5TE81015	.	+	ATMUNX1	MuDR	DNA	116	short	155	medium	11287318	chromoarm	640	no-CHH	no-CHH	.	.	.	.	.
Chr5	22510618	22510692	AT5TE81025	.	+	ATDNATA1	Mariner	DNA	75	tiny	28	low	11292215	chromoarm	204	.	.	.	.	.	.	.
Chr5	22510692	22512918	AT5TE81030	.	-	ATDNAI27T9B	MuDR	DNA	2226	medium	43	low	11292290	chromoarm	279	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	22512918	22513187	AT5TE81035	.	-	DT1	Mariner	DNA	269	short	123	medium	11294516	chromoarm	1399	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	22513187	22513424	AT5TE81040	.	-	HELITRONY3	Helitron	RC	237	short	1399	high	11294785	chromoarm	1162	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	22513764	22513847	AT5TE81045	.	-	ATLINE1A	L1	LINE	84	tiny	289	high	11295361	chromoarm	739	.	.	.	.	.	.	.
Chr5	22519197	22519637	AT5TE81055	.	+	ATREP19	.	DNA	440	short	189	medium	11300795	chromoarm	273	no-CHH	no-CHH	.	.	.	.	.
Chr5	22529206	22529301	AT5TE81090	.	+	ATDNATA1	Mariner	DNA	95	tiny	28	low	11310804	chromoarm	1071	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	22534329	22535096	AT5TE81100	.	+	TNAT2A	.	DNA	768	short	38	low	11315926	chromoarm	405	.	.	.	.	.	.	.
Chr5	22537633	22538395	AT5TE81105	.	+	ATREP11A	Helitron	RC	762	short	95	medium	11319231	chromoarm	809	no-CHH	no-CHH	.	.	.	.	.
Chr5	22539608	22540276	AT5TE81110	.	-	VANDAL17	MuDR	DNA	668	short	178	medium	11321206	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	22566478	22567195	AT5TE81210	.	+	HELITRONY1A	Helitron	RC	717	short	271	high	11348076	chromoarm	86	no-CHH	no-CHH	.	.	.	.	.
Chr5	22613297	22613354	AT5TE81380	.	-	ATCOPIA89	Copia	LTR	57	tiny	12	low	11394895	chromoarm	0	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	22613354	22618266	AT5TE81385	.	-	ATCOPIA13	Copia	LTR	4912	medium	35	low	11394952	chromoarm	43	no-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	22620765	22621644	AT5TE81390	.	-	ATREP2	Helitron	RC	879	short	164	medium	11402363	chromoarm	561	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	22621644	22621738	AT5TE81395	.	-	ATREP2	Helitron	RC	94	tiny	164	medium	11403242	chromoarm	998	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	22621740	22622023	AT5TE81400	.	+	ATREP13	Helitron	RC	284	short	106	medium	11403337	chromoarm	713	.	.	.	.	.	.	.
Chr5	22627622	22627718	AT5TE81420	.	+	ATREP15	Helitron	RC	96	tiny	1003	high	11409220	chromoarm	1730	no-CHH	PolIV-and-RDR6-RdDM	ExpressedAndAnnotated	22633352,22633338	22627659,22627662	-,-	transcript_id-"8a37eee3-166e-421b-8fa4-e8d2cad1c9da|14",transcript_id-"2ae51819-33a3-4dd5-a82a-1c6115987080|14"
Chr5	22628016	22633342	AT5TE81425	.	-	Unassigned	.	Unassigned	5326	long	.	low	11409614	chromoarm	2124	no-CHH	no-RdDM	ExpressedAndAnnotated	22633352,22633338,22628547	22627659,22627662,22627986	-,-,-	transcript_id-"8a37eee3-166e-421b-8fa4-e8d2cad1c9da|14",transcript_id-"2ae51819-33a3-4dd5-a82a-1c6115987080|14",transcript_id-"0fdd36da-f4de-4ac1-83c0-37936bce4004|3"
Chr5	22657292	22657692	AT5TE81510	.	-	ATIS112A	Harbinger	DNA	400	short	173	medium	11438890	chromoarm	0	no-RdDM	no-CHH	.	.	.	.	.
Chr5	22670729	22671337	AT5TE81560	.	+	HELITRONY1D	Helitron	RC	608	short	756	high	11452327	chromoarm	87	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	22675479	22675915	AT5TE81570	.	+	ATREP10D	Helitron	RC	436	short	1295	high	11457077	chromoarm	1686	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	22675915	22675967	AT5TE81575	.	-	ATDNA2T9C	MuDR	DNA	52	tiny	242	high	11457513	chromoarm	1634	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr5	22675968	22676360	AT5TE81580	.	+	BRODYAGA2	MuDR	DNA	393	short	525	high	11457565	chromoarm	1241	.	.	.	.	.	.	.
Chr5	22676360	22677324	AT5TE81585	.	-	ATREP3	Helitron	RC	964	short	1439	high	11457958	chromoarm	277	no-CHH	no-CHH	.	.	.	.	.
Chr5	22680083	22680168	AT5TE81595	.	-	ATREP3	Helitron	RC	85	tiny	1439	high	11461681	chromoarm	16	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	22680168	22681206	AT5TE81600	.	+	ATREP10D	Helitron	RC	1038	short	1295	high	11461766	chromoarm	101	no-CHH	no-CHH	.	.	.	.	.
Chr5	22702312	22702682	AT5TE81680	.	+	HELITRONY1A	Helitron	RC	370	short	271	high	11483910	chromoarm	294	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr5	22726125	22726164	AT5TE81770	.	-	VANDAL4	MuDR	DNA	39	tiny	102	medium	11507723	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	22726164	22726373	AT5TE81775	.	-	VANDAL4	MuDR	DNA	209	short	102	medium	11507762	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	22741689	22741812	AT5TE81830	.	-	ATHATN6	HAT	DNA	123	short	43	low	11523287	chromoarm	703	no-CHH	no-CHH	.	.	.	.	.
Chr5	22745615	22747019	AT5TE81840	.	+	ATREP10D	Helitron	RC	1404	short	1295	high	11527213	chromoarm	706	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	22747019	22747482	AT5TE81845	.	+	BRODYAGA1A	MuDR	DNA	463	short	586	high	11528617	chromoarm	285	no-CHH	no-CHH	.	.	.	.	.
Chr5	22748304	22748477	AT5TE81850	.	-	ATCOPIA24	Copia	LTR	173	short	27	low	11529902	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	22764782	22765196	AT5TE81910	.	-	ATDNA2T9C	MuDR	DNA	414	short	242	high	11546380	chromoarm	1243	no-CHH	no-CHH	.	.	.	.	.
Chr5	22766972	22767618	AT5TE81915	.	-	ATREP11	Helitron	RC	646	short	841	high	11548570	chromoarm	1299	no-CHH	no-CHH	.	.	.	.	.
Chr5	22777823	22779058	AT5TE81950	.	-	ATREP10D	Helitron	RC	1235	short	1295	high	11559421	chromoarm	1757	no-CHH	no-CHH	.	.	.	.	.
Chr5	22795154	22795230	AT5TE82010	.	-	ATREP9	Helitron	RC	76	tiny	201	high	11576752	chromoarm	3182	no-CHH	no-CHH	.	.	.	.	.
Chr5	22795230	22795754	AT5TE82015	.	-	ATREP15	Helitron	RC	524	short	1003	high	11576828	chromoarm	3258	no-CHH	no-CHH	.	.	.	.	.
Chr5	22796339	22796434	AT5TE82020	.	-	ATHILA7	Gypsy	LTR	95	tiny	134	medium	11577937	chromoarm	3136	no-CHH	no-CHH	.	.	.	.	.
Chr5	22798454	22798754	AT5TE82025	.	-	HELITRONY1B	Helitron	RC	300	short	414	high	11580052	chromoarm	816	no-CHH	no-CHH	.	.	.	.	.
Chr5	22804955	22805719	AT5TE82040	.	-	ATREP3	Helitron	RC	764	short	1439	high	11586553	chromoarm	1041	no-CHH	no-CHH	.	.	.	.	.
Chr5	22805719	22806039	AT5TE82045	.	+	ATREP10D	Helitron	RC	320	short	1295	high	11587317	chromoarm	1805	no-CHH	no-CHH	.	.	.	.	.
Chr5	22806039	22806728	AT5TE82050	.	-	ATREP15	Helitron	RC	689	short	1003	high	11587637	chromoarm	2125	no-CHH	no-CHH	.	.	.	.	.
Chr5	22830627	22833000	AT5TE82140	.	+	AT9MU1	MuDR	DNA	2373	medium	10	low	11612225	chromoarm	963	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	22831576	22831953	AT5TE82145	.	+	ATMU1	MuDR	DNA	377	short	59	medium	11613174	chromoarm	2010	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	22833101	22833234	AT5TE82150	.	+	AT9NMU1	MuDR	DNA	134	short	45	low	11614698	chromoarm	729	.	.	.	.	.	.	.
Chr5	22834944	22835373	AT5TE82155	.	+	HELITRONY1B	Helitron	RC	429	short	414	high	11616542	chromoarm	72	no-CHH	no-CHH	.	.	.	.	.
Chr5	22841356	22841512	AT5TE82170	.	-	HARBINGER	Harbinger	DNA	156	short	90	medium	11622954	chromoarm	1003	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	22847867	22848369	AT5TE82190	.	+	ATREP6	Helitron	RC	502	short	181	medium	11629465	chromoarm	138	no-CHH	no-CHH	.	.	.	.	.
Chr5	22879183	22879712	AT5TE82300	.	+	HELITRONY3	Helitron	RC	529	short	1399	high	11660781	chromoarm	2008	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	22879712	22880038	AT5TE82305	.	+	HELITRON2	Helitron	RC	326	short	194	medium	11661310	chromoarm	1682	no-CHH	no-CHH	.	.	.	.	.
Chr5	22880038	22880075	AT5TE82310	.	-	ATREP10D	Helitron	RC	37	tiny	1295	high	11661636	chromoarm	1645	no-CHH	no-CHH	.	.	.	.	.
Chr5	22911048	22916161	AT5TE82430	.	+	META1	Copia	LTR	5113	long	138	medium	11692646	chromoarm	227	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	22956173	22956221	AT5TE82580	.	+	ATCOPIA61	Copia	LTR	48	tiny	12	low	11737771	chromoarm	596	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	22956221	22957218	AT5TE82585	.	+	ATCOPIA62	Copia	LTR	997	short	16	low	11737819	chromoarm	644	no-CHH	no-CHH	ExpressedAndAnnotated	22956286,22956286,22956291	22956836,22956951,22957254	+,+,+	transcript_id-"b5c34b32-f7b5-49a4-ad62-52cbc03f9ce7|7",transcript_id-"8fedefc8-6b64-41d5-b9de-2ae3efd76e20|3",transcript_id-"24d14d2b-d72c-45db-9863-284ba28ea887|5"
Chr5	22978330	22979059	AT5TE82660	.	+	Unassigned	.	Unassigned	729	short	.	low	11759928	chromoarm	492	no-CHH	no-CHH	.	.	.	.	.
Chr5	22982167	22983426	AT5TE82670	.	-	ATREP15	Helitron	RC	1259	short	1003	high	11763765	chromoarm	15	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	23003426	23003928	AT5TE82740	.	-	HELITRONY1A	Helitron	RC	502	short	271	high	11785024	chromoarm	355	no-CHH	no-CHH	.	.	.	.	.
Chr5	23024592	23024859	AT5TE82820	.	+	RP1_AT	.	DNA	268	short	87	medium	11806189	chromoarm	140	.	.	.	.	.	.	.
Chr5	23026065	23027528	AT5TE82825	.	-	ATREP10D	Helitron	RC	1463	short	1295	high	11807663	chromoarm	300	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	23034597	23034729	AT5TE82850	.	-	ARNOLD2	MuDR	DNA	132	short	68	medium	11816195	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	23034729	23034750	AT5TE82855	.	+	ATHAT1	HAT	DNA	21	tiny	105	medium	11816327	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	23040204	23040339	AT5TE82870	.	-	ATCOPIA26	Copia	LTR	135	short	19	low	11821802	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	23049701	23049929	AT5TE82900	.	+	ATHPOGON1	Pogo	DNA	228	short	174	medium	11831299	chromoarm	1456	no-CHH	no-CHH	.	.	.	.	.
Chr5	23049929	23050694	AT5TE82905	.	-	ATREP14	Helitron	RC	765	short	47	low	11831527	chromoarm	1684	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	23050694	23051468	AT5TE82910	.	+	ATREP10A	Helitron	RC	774	short	279	high	11832292	chromoarm	2449	no-CHH	no-CHH	.	.	.	.	.
Chr5	23086505	23087169	AT5TE83040	.	-	HELITRONY3	Helitron	RC	664	short	1399	high	11868103	chromoarm	550	no-CHH	no-CHH	.	.	.	.	.
Chr5	23102389	23102798	AT5TE83100	.	-	ATHPOGON1	Pogo	DNA	409	short	174	medium	11883987	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	23123436	23123857	AT5TE83180	.	+	VANDAL17	MuDR	DNA	421	short	178	medium	11905034	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	23123857	23123918	AT5TE83185	.	-	ATMU10	MuDR	DNA	61	tiny	87	medium	11905455	chromoarm	0	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	23128953	23130148	AT5TE83195	.	-	ATREP1	Helitron	RC	1195	short	498	high	11910551	chromoarm	1535	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	23130148	23130212	AT5TE83200	.	-	ATREP1	Helitron	RC	64	tiny	498	high	11911746	chromoarm	2730	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	23130212	23130329	AT5TE83205	.	+	ATREP10D	Helitron	RC	117	short	1295	high	11911810	chromoarm	2794	no-CHH	no-CHH	.	.	.	.	.
Chr5	23134880	23139981	AT5TE83215	.	-	ATCOPIA49	Copia	LTR	5101	long	34	low	11916478	chromoarm	5309	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	23144984	23145129	AT5TE83225	.	-	LIMPET1	MuDR	DNA	145	short	116	medium	11926582	chromoarm	161	no-CHH	no-CHH	.	.	.	.	.
Chr5	23163678	23164070	AT5TE83290	.	+	ATDNA2T9C	MuDR	DNA	392	short	242	high	11945276	chromoarm	538	no-CHH	no-CHH	.	.	.	.	.
Chr5	23187123	23187585	AT5TE83380	.	+	BRODYAGA1A	MuDR	DNA	462	short	586	high	11968721	chromoarm	325	no-CHH	no-CHH	.	.	.	.	.
Chr5	23236743	23237270	AT5TE83560	.	+	ATREP15	Helitron	RC	527	short	1003	high	12018341	chromoarm	362	no-CHH	no-CHH	.	.	.	.	.
Chr5	23240674	23241308	AT5TE83570	.	+	ATMU7	MuDR	DNA	634	short	32	low	12022272	chromoarm	288	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	23249689	23250269	AT5TE83600	.	-	AT9TSD1	MuDR	DNA	580	short	55	medium	12031287	chromoarm	400	no-CHH	no-CHH	.	.	.	.	.
Chr5	23256199	23256417	AT5TE83620	.	-	VANDAL17	MuDR	DNA	218	short	178	medium	12037797	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	23258956	23259169	AT5TE83625	.	+	HELITRONY2	Helitron	RC	213	short	198	medium	12040554	chromoarm	1772	no-CHH	no-CHH	.	.	.	.	.
Chr5	23282222	23282545	AT5TE83710	.	-	ATREP3	Helitron	RC	323	short	1439	high	12063820	chromoarm	1254	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	23282545	23283063	AT5TE83715	.	+	ATTIR16T3A	.	DNA	518	short	106	medium	12064143	chromoarm	831	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	23283063	23283178	AT5TE83720	.	-	ARNOLDY2	MuDR	DNA	115	short	288	high	12064661	chromoarm	716	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	23283178	23283227	AT5TE83725	.	-	ATREP3	Helitron	RC	49	tiny	1439	high	12064776	chromoarm	667	no-CHH	no-CHH	.	.	.	.	.
Chr5	23290321	23290643	AT5TE83750	.	+	ATREP19	.	DNA	322	short	189	medium	12071919	chromoarm	765	no-CHH	no-CHH	.	.	.	.	.
Chr5	23292916	23293581	AT5TE83755	.	-	HELITRONY1E	Helitron	RC	665	short	447	high	12074514	chromoarm	2437	no-CHH	no-CHH	.	.	.	.	.
Chr5	23301525	23301608	AT5TE83780	.	-	ATCOPIA80	Copia	LTR	83	tiny	7	low	12083123	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	23309799	23309954	AT5TE83810	.	-	TAG3N1	HAT	DNA	155	short	97	medium	12091397	chromoarm	917	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	23310023	23310142	AT5TE83815	.	-	ATMUN1	MuDR	DNA	119	short	107	medium	12091621	chromoarm	729	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	23323170	23323333	AT5TE83860	.	-	ATMU3	MuDR	DNA	163	short	15	low	12104768	chromoarm	483	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	23323910	23324480	AT5TE83865	.	-	BRODYAGA2	MuDR	DNA	570	short	525	high	12105508	chromoarm	826	no-CHH	no-CHH	.	.	.	.	.
Chr5	23332888	23333596	AT5TE83890	.	+	ATREP15	Helitron	RC	708	short	1003	high	12114486	chromoarm	1307	no-CHH	no-CHH	.	.	.	.	.
Chr5	23393616	23393929	AT5TE84110	.	+	ATDNA2T9C	MuDR	DNA	313	short	242	high	12175214	chromoarm	106	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	23407893	23408587	AT5TE84160	.	-	ATREP15	Helitron	RC	694	short	1003	high	12189491	chromoarm	517	no-CHH	no-CHH	.	.	.	.	.
Chr5	23431543	23432883	AT5TE84250	.	+	ATREP12	Helitron	RC	1340	short	22	low	12213141	chromoarm	61	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	23484838	23485012	AT5TE84440	.	-	LIMPET1	MuDR	DNA	174	short	116	medium	12266436	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	23516633	23516848	AT5TE84560	.	-	ATHATN3	HAT	DNA	215	short	70	medium	12298231	chromoarm	154	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	23523456	23523584	AT5TE84580	.	-	HARBINGER	Harbinger	DNA	128	short	90	medium	12305054	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	23579256	23579535	AT5TE84790	.	-	ATENSPM5	En-Spm	DNA	279	short	111	medium	12360854	chromoarm	0	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	23588245	23588348	AT5TE84820	.	-	HELITRONY3	Helitron	RC	103	short	1399	high	12369843	chromoarm	564	no-CHH	no-CHH	.	.	.	.	.
Chr5	23588348	23589128	AT5TE84825	.	+	HELITRONY3	Helitron	RC	780	short	1399	high	12369946	chromoarm	667	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	23589128	23589153	AT5TE84830	.	+	HELITRONY3	Helitron	RC	25	tiny	1399	high	12370726	chromoarm	925	no-CHH	no-CHH	.	.	.	.	.
Chr5	23589153	23589320	AT5TE84835	.	+	ATREP1	Helitron	RC	167	short	498	high	12370751	chromoarm	758	no-CHH	no-CHH	.	.	.	.	.
Chr5	23596199	23596341	AT5TE84860	.	-	LIMPET1	MuDR	DNA	142	short	116	medium	12377797	chromoarm	27	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	23618615	23619203	AT5TE84940	.	-	ATREP3	Helitron	RC	588	short	1439	high	12400213	chromoarm	270	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	23619219	23619407	AT5TE84945	.	+	SIMPLEHAT1	HAT	DNA	188	short	56	medium	12400817	chromoarm	191	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	23640071	23640248	AT5TE85020	.	+	VANDAL1	MuDR	DNA	177	short	80	medium	12421669	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	23654791	23654944	AT5TE85070	.	+	RP1_AT	.	DNA	153	short	87	medium	12436389	chromoarm	367	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	23661213	23661754	AT5TE85090	.	-	ATREP3	Helitron	RC	541	short	1439	high	12442811	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	23661754	23662856	AT5TE85095	.	-	ATREP2A	Helitron	RC	1102	short	116	medium	12443352	chromoarm	505	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	23668495	23668680	AT5TE85110	.	+	ATDNAI27T9C	MuDR	DNA	185	short	108	medium	12450093	chromoarm	21	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr5	23750993	23751431	AT5TE85420	.	+	ATLINE1_3A	L1	LINE	438	short	160	medium	12532591	chromoarm	524	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	23762785	23763004	AT5TE85460	.	-	ATREP9	Helitron	RC	219	short	201	high	12544383	chromoarm	838	no-CHH	no-CHH	.	.	.	.	.
Chr5	23763004	23763848	AT5TE85465	.	-	ATREP15	Helitron	RC	844	short	1003	high	12544602	chromoarm	96	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	23774321	23775709	AT5TE85500	.	-	ATDNAI27T9A	MuDR	DNA	1388	short	116	medium	12555919	chromoarm	256	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	23787976	23788159	AT5TE85550	.	+	ATLINEIII	L1	LINE	183	short	196	medium	12569574	chromoarm	1362	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	23825141	23825533	AT5TE85690	.	-	ATREP4	Helitron	RC	392	short	832	high	12606739	chromoarm	1626	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	23842822	23843276	AT5TE85750	.	+	HELITRONY3	Helitron	RC	454	short	1399	high	12624420	chromoarm	303	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	23868940	23869228	AT5TE85850	.	-	ATREP5	Helitron	RC	288	short	624	high	12650538	chromoarm	920	no-CHH	no-CHH	.	.	.	.	.
Chr5	23869774	23869963	AT5TE85855	.	+	BRODYAGA1A	MuDR	DNA	189	short	586	high	12651372	chromoarm	228	no-CHH	no-CHH	.	.	.	.	.
Chr5	23936223	23936322	AT5TE86100	.	+	HELITRON2	Helitron	RC	99	tiny	194	medium	12717821	chromoarm	1596	no-CHH	no-CHH	.	.	.	.	.
Chr5	23936322	23936826	AT5TE86105	.	+	HELITRONY2	Helitron	RC	504	short	198	medium	12717920	chromoarm	1695	no-CHH	no-CHH	.	.	.	.	.
Chr5	23936826	23936878	AT5TE86110	.	+	ATREP9	Helitron	RC	52	tiny	201	high	12718424	chromoarm	2199	no-CHH	no-CHH	.	.	.	.	.
Chr5	23995930	23996090	AT5TE86330	.	+	ATLINE1_1	L1	LINE	160	short	61	medium	12777528	chromoarm	202	no-CHH	no-CHH	.	.	.	.	.
Chr5	24002083	24003328	AT5TE86350	.	+	ATREP12	Helitron	RC	1245	short	22	low	12783681	chromoarm	509	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	24002196	24003228	+	transcript_id-"3cc3cb32-f903-4568-ab5f-8b1a2f28ba48|3"
Chr5	24003510	24003608	AT5TE86355	.	+	ATHPOGON3	Pogo	DNA	98	tiny	118	medium	12785108	chromoarm	438	no-RdDM	no-CHH	.	.	.	.	.
Chr5	24019749	24020263	AT5TE86410	.	-	ATENSPM9	En-Spm	DNA	514	short	97	medium	12801347	chromoarm	1672	RDR6-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	24022798	24022992	AT5TE86415	.	+	VANDAL17	MuDR	DNA	194	short	178	medium	12804396	chromoarm	4721	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	24025841	24025902	AT5TE86425	.	+	ATENSPM9	En-Spm	DNA	61	tiny	97	medium	12807439	chromoarm	5443	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	24025902	24027934	AT5TE86430	.	+	ATENSPM6	En-Spm	DNA	2032	medium	151	medium	12807500	chromoarm	3411	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	24027934	24027954	AT5TE86435	.	+	ATENSPM2	En-Spm	DNA	20	tiny	114	medium	12809532	chromoarm	3391	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr5	24028068	24029977	AT5TE86440	.	+	ATENSPM2	En-Spm	DNA	1909	short	114	medium	12809666	chromoarm	1368	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	24081252	24081579	AT5TE86630	.	-	ATREP3	Helitron	RC	327	short	1439	high	12862850	chromoarm	57	no-CHH	no-CHH	.	.	.	.	.
Chr5	24081579	24081633	AT5TE86635	.	+	ATTIRX1A	.	DNA	54	tiny	63	medium	12863177	chromoarm	384	no-CHH	no-CHH	.	.	.	.	.
Chr5	24083306	24083400	AT5TE86640	.	+	ATDNAI27T9A	MuDR	DNA	94	tiny	116	medium	12864904	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	24100678	24100970	AT5TE86700	.	+	ATREP10B	Helitron	RC	292	short	491	high	12882276	chromoarm	291	PolIV-and-RDR6-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	24110276	24111214	AT5TE86730	.	-	ATREP10D	Helitron	RC	938	short	1295	high	12891874	chromoarm	228	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	24110576	24111125	AT5TE86735	.	-	ATTIR16T3A	.	DNA	549	short	106	medium	12892174	chromoarm	317	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	24111214	24111242	AT5TE86740	.	+	ARNOLDY1	MuDR	DNA	28	tiny	237	high	12892812	chromoarm	200	no-CHH	PolIV-RdDM	.	.	.	.	.
Chr5	24117641	24117960	AT5TE86760	.	-	HELITRONY1A	Helitron	RC	319	short	271	high	12899239	chromoarm	1497	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	24117961	24118598	AT5TE86765	.	+	ATREP2	Helitron	RC	637	short	164	medium	12899559	chromoarm	1783	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	24136790	24136886	AT5TE86830	.	+	TNAT1A	.	DNA	96	tiny	162	medium	12918388	chromoarm	294	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	24153586	24153732	AT5TE86890	.	+	RathE1_cons	.	RathE1_cons	146	short	213	high	12935184	chromoarm	502	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	24153732	24154021	AT5TE86895	.	-	ATREP5	Helitron	RC	289	short	624	high	12935330	chromoarm	648	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	24185812	24187902	AT5TE87010	.	-	ATREP3	Helitron	RC	2090	medium	1439	high	12967410	chromoarm	548	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	24187902	24188138	AT5TE87015	.	+	ATREP3	Helitron	RC	236	short	1439	high	12969500	chromoarm	461	no-CHH	no-CHH	.	.	.	.	.
Chr5	24212272	24212567	AT5TE87100	.	-	ATMU3	MuDR	DNA	295	short	15	low	12993870	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	24226935	24227180	AT5TE87150	.	+	ATENSPM4	En-Spm	DNA	245	short	50	medium	13008533	chromoarm	152	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	24240367	24240789	AT5TE87200	.	+	ARNOLDY1	MuDR	DNA	422	short	237	high	13021965	chromoarm	288	no-CHH	no-CHH	.	.	.	.	.
Chr5	24276439	24276601	AT5TE87330	.	+	ATTIR16T3A	.	DNA	162	short	106	medium	13058037	chromoarm	548	no-CHH	no-CHH	.	.	.	.	.
Chr5	24279101	24279520	AT5TE87335	.	-	ATDNA2T9C	MuDR	DNA	419	short	242	high	13060699	chromoarm	240	no-CHH	no-CHH	.	.	.	.	.
Chr5	24285141	24285167	AT5TE87350	.	-	HELITRONY3	Helitron	RC	26	tiny	1399	high	13066739	chromoarm	381	no-CHH	no-CHH	.	.	.	.	.
Chr5	24285167	24285637	AT5TE87355	.	-	ATTIR16T3A	.	DNA	470	short	106	medium	13066765	chromoarm	282	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	24301398	24301642	AT5TE87410	.	+	ATIS112A	Harbinger	DNA	244	short	173	medium	13082996	chromoarm	606	no-CHH	no-CHH	.	.	.	.	.
Chr5	24302976	24303057	AT5TE87415	.	+	ATIS112A	Harbinger	DNA	82	tiny	173	medium	13084573	chromoarm	0	.	.	LowExpressed	.	.	.	.
Chr5	24303057	24305454	AT5TE87420	.	-	ATREP15	Helitron	RC	2397	medium	1003	high	13084655	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	24305454	24306275	AT5TE87425	.	-	HELITRONY3	Helitron	RC	821	short	1399	high	13087052	chromoarm	53	no-CHH	no-CHH	.	.	.	.	.
Chr5	24306275	24306331	AT5TE87430	.	+	ATREP4	Helitron	RC	56	tiny	832	high	13087873	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	24307576	24307909	AT5TE87435	.	-	ATREP15	Helitron	RC	333	short	1003	high	13089174	chromoarm	56	no-CHH	no-CHH	.	.	.	.	.
Chr5	24307909	24308355	AT5TE87440	.	-	BRODYAGA1	MuDR	DNA	446	short	251	high	13089507	chromoarm	202	no-CHH	no-CHH	.	.	.	.	.
Chr5	24312570	24312656	AT5TE87450	.	-	ATDNAI27T9A	MuDR	DNA	86	tiny	116	medium	13094168	chromoarm	383	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	24313354	24313387	AT5TE87455	.	-	ATREP7	Helitron	RC	33	tiny	164	medium	13094952	chromoarm	1167	no-CHH	no-CHH	.	.	.	.	.
Chr5	24313387	24313523	AT5TE87460	.	-	HELITRONY1B	Helitron	RC	136	short	414	high	13094985	chromoarm	1200	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	24313523	24314622	AT5TE87465	.	+	ATREP1	Helitron	RC	1099	short	498	high	13095121	chromoarm	1336	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	24314622	24314678	AT5TE87470	.	+	ATREP3	Helitron	RC	56	tiny	1439	high	13096220	chromoarm	2435	RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	24325173	24325718	AT5TE87510	.	-	BRODYAGA2	MuDR	DNA	545	short	525	high	13106771	chromoarm	197	no-CHH	no-CHH	.	.	.	.	.
Chr5	24335273	24335581	AT5TE87550	.	+	VANDAL17	MuDR	DNA	308	short	178	medium	13116871	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	24338814	24339184	AT5TE87560	.	+	HELITRONY1A	Helitron	RC	370	short	271	high	13120412	chromoarm	167	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	24342462	24343252	AT5TE87570	.	-	ATREP11	Helitron	RC	790	short	841	high	13124060	chromoarm	0	no-CHH	no-CHH	ExpressedAndAnnotated	24339189	24342558	+	transcript_id-"f7e6c139-53b4-4091-8282-cc330c061fde|8"
Chr5	24343711	24343852	AT5TE87575	.	-	HELITRONY3	Helitron	RC	141	short	1399	high	13125309	chromoarm	267	no-CHH	no-CHH	.	.	.	.	.
Chr5	24343852	24345901	AT5TE87580	.	-	ATREP10D	Helitron	RC	2049	medium	1295	high	13125450	chromoarm	47	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	24363512	24363615	AT5TE87650	.	+	ATCOPIA28	Copia	LTR	103	short	81	medium	13145110	chromoarm	238	no-CHH	no-CHH	.	.	.	.	.
Chr5	24370736	24370966	AT5TE87680	.	-	RP1_AT	.	DNA	230	short	87	medium	13152334	chromoarm	174	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	24377859	24378715	AT5TE87710	.	-	ATREP11	Helitron	RC	856	short	841	high	13159457	chromoarm	920	no-CHH	no-CHH	.	.	.	.	.
Chr5	24383011	24383288	AT5TE87720	.	+	ATTIRTA1	Tc1	DNA	277	short	95	medium	13164609	chromoarm	1445	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	24422443	24422727	AT5TE87870	.	-	HELITRON4	Helitron	RC	284	short	199	medium	13204041	chromoarm	110	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	24435652	24435711	AT5TE87920	.	-	ATREP10B	Helitron	RC	59	tiny	491	high	13217250	chromoarm	2453	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	24435711	24436607	AT5TE87925	.	-	ATREP10	Helitron	RC	896	short	63	medium	13217309	chromoarm	1857	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	24436607	24436736	AT5TE87930	.	-	ATREP10B	Helitron	RC	129	short	491	high	13218205	chromoarm	1728	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	24448532	24448644	AT5TE87970	.	+	ATREP11	Helitron	RC	112	short	841	high	13230130	chromoarm	1506	no-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	24448644	24449557	AT5TE87975	.	+	ATREP1	Helitron	RC	913	short	498	high	13230242	chromoarm	1281	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	24448803	24449405	AT5TE87980	.	+	ATREP2	Helitron	RC	602	short	164	medium	13230401	chromoarm	1433	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	24449557	24449650	AT5TE87985	.	+	BRODYAGA1A	MuDR	DNA	93	tiny	586	high	13231155	chromoarm	1188	no-CHH	no-CHH	.	.	.	.	.
Chr5	24466224	24466312	AT5TE88040	.	+	VANDAL13	MuDR	DNA	88	tiny	38	low	13247822	chromoarm	218	no-CHH	no-CHH	.	.	.	.	.
Chr5	24467435	24467866	AT5TE88045	.	-	HELITRONY1D	Helitron	RC	431	short	756	high	13249033	chromoarm	325	no-CHH	no-CHH	.	.	.	.	.
Chr5	24474979	24475198	AT5TE88070	.	-	HELITRONY1E	Helitron	RC	219	short	447	high	13256577	chromoarm	556	no-CHH	no-CHH	.	.	.	.	.
Chr5	24475199	24476590	AT5TE88075	.	-	ATREP3	Helitron	RC	1392	short	1439	high	13256796	chromoarm	775	.	.	.	.	.	.	.
Chr5	24476590	24476748	AT5TE88080	.	-	ATREP11	Helitron	RC	158	short	841	high	13258188	chromoarm	2167	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	24503109	24503800	AT5TE88180	.	-	HELITRONY1A	Helitron	RC	691	short	271	high	13284707	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	24514577	24515235	AT5TE88220	.	+	ATREP5	Helitron	RC	658	short	624	high	13296175	chromoarm	162	no-CHH	no-CHH	.	.	.	.	.
Chr5	24526537	24526826	AT5TE88260	.	+	BRODYAGA1A	MuDR	DNA	290	short	586	high	13308134	chromoarm	0	.	.	.	.	.	.	.
Chr5	24530826	24531336	AT5TE88270	.	-	ATREP10B	Helitron	RC	510	short	491	high	13312424	chromoarm	0	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	24537284	24537988	AT5TE88290	.	-	HELITRONY1A	Helitron	RC	704	short	271	high	13318882	chromoarm	632	no-CHH	no-CHH	.	.	.	.	.
Chr5	24585978	24586617	AT5TE88470	.	+	ATREP3	Helitron	RC	639	short	1439	high	13367576	chromoarm	820	no-CHH	no-CHH	.	.	.	.	.
Chr5	24586632	24587115	AT5TE88475	.	+	ATREP2	Helitron	RC	483	short	164	medium	13368230	chromoarm	322	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	24587115	24587191	AT5TE88480	.	-	BRODYAGA1A	MuDR	DNA	76	tiny	586	high	13368713	chromoarm	246	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	24587191	24587395	AT5TE88485	.	+	ATREP11A	Helitron	RC	204	short	95	medium	13368789	chromoarm	42	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	24601313	24602178	AT5TE88530	.	+	SIMPLEGUY1	Harbinger	DNA	865	short	116	medium	13382911	chromoarm	0	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	24659626	24659905	AT5TE88740	.	+	ATENSPM6	En-Spm	DNA	279	short	151	medium	13441224	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	24660146	24660321	AT5TE88745	.	+	ATHILA6A	Gypsy	LTR	175	short	247	high	13441744	chromoarm	43	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	24686088	24686546	AT5TE88840	.	-	ATDNA2T9C	MuDR	DNA	458	short	242	high	13467686	chromoarm	214	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	24700252	24701147	AT5TE88890	.	-	ATREP15	Helitron	RC	895	short	1003	high	13481850	chromoarm	180	no-CHH	no-CHH	.	.	.	.	.
Chr5	24703481	24703887	AT5TE88895	.	+	ATTIRX1C	.	DNA	406	short	39	low	13485079	chromoarm	928	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	24722124	24722537	AT5TE88960	.	+	ATDNA2T9C	MuDR	DNA	413	short	242	high	13503722	chromoarm	283	no-CHH	no-CHH	.	.	.	.	.
Chr5	24722537	24722576	AT5TE88965	.	-	ATTIRTA1	Tc1	DNA	39	tiny	95	medium	13504135	chromoarm	293	no-CHH	no-CHH	.	.	.	.	.
Chr5	24768017	24768430	AT5TE89130	.	+	BOMZH2	MuDR	DNA	413	short	47	low	13549615	chromoarm	185	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	24818622	24818769	AT5TE89320	.	+	HELITRONY3	Helitron	RC	147	short	1399	high	13600220	chromoarm	1127	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	24818769	24820162	AT5TE89325	.	+	SIMPLEHAT2	HAT	DNA	1393	short	73	medium	13600367	chromoarm	1274	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	24820162	24820311	AT5TE89330	.	+	HELITRONY3	Helitron	RC	149	short	1399	high	13601760	chromoarm	1700	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	24820607	24821241	AT5TE89335	.	+	ATREP3	Helitron	RC	634	short	1439	high	13602205	chromoarm	770	no-CHH	no-CHH	.	.	.	.	.
Chr5	24821241	24821272	AT5TE89340	.	+	ATREP10D	Helitron	RC	31	tiny	1295	high	13602839	chromoarm	739	no-CHH	no-CHH	.	.	.	.	.
Chr5	24870374	24870466	AT5TE89520	.	-	HELITRON5	Helitron	RC	92	tiny	56	medium	13651972	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	24875766	24875858	AT5TE89530	.	-	HELITRON5	Helitron	RC	92	tiny	56	medium	13657364	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	24903982	24904700	AT5TE89630	.	+	ATREP15	Helitron	RC	718	short	1003	high	13685580	chromoarm	872	no-CHH	no-CHH	.	.	.	.	.
Chr5	24921827	24921953	AT5TE89690	.	+	ATLINE1_5	L1	LINE	126	short	91	medium	13703425	chromoarm	856	no-CHH	no-CHH	.	.	.	.	.
Chr5	24942027	24943968	AT5TE89760	.	+	ATREP1	Helitron	RC	1941	short	498	high	13723625	chromoarm	0	no-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	24948390	24949100	AT5TE89770	.	+	ATREP10A	Helitron	RC	710	short	279	high	13729988	chromoarm	165	no-CHH	no-CHH	.	.	.	.	.
Chr5	24949407	24950165	AT5TE89775	.	+	HELITRONY3	Helitron	RC	758	short	1399	high	13731005	chromoarm	519	no-CHH	no-CHH	.	.	.	.	.
Chr5	24994183	24994477	AT5TE89930	.	-	RathE2_cons	.	RathE2_cons	294	short	74	medium	13775781	chromoarm	1955	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	25047949	25048453	AT5TE90130	.	-	HELITRON4	Helitron	RC	504	short	199	medium	13829547	chromoarm	2230	no-CHH	no-CHH	.	.	.	.	.
Chr5	25048857	25049375	AT5TE90135	.	+	HELITRONY1E	Helitron	RC	518	short	447	high	13830455	chromoarm	1308	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	25053513	25053819	AT5TE90145	.	+	VANDAL17	MuDR	DNA	306	short	178	medium	13835111	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	25074152	25074800	AT5TE90220	.	-	HELITRONY1D	Helitron	RC	648	short	756	high	13855750	chromoarm	235	no-CHH	no-CHH	.	.	.	.	.
Chr5	25081166	25081229	AT5TE90240	.	+	ATENSPM9	En-Spm	DNA	63	tiny	97	medium	13862764	chromoarm	308	no-CHH	no-CHH	.	.	.	.	.
Chr5	25092626	25092728	AT5TE90280	.	-	ATDNAI27T9C	MuDR	DNA	102	short	108	medium	13874224	chromoarm	200	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	25141277	25142534	AT5TE90460	.	-	ATREP10D	Helitron	RC	1257	short	1295	high	13922875	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	25141764	25142304	AT5TE90465	.	-	HELITRONY1D	Helitron	RC	540	short	756	high	13923362	chromoarm	6	no-CHH	no-CHH	.	.	.	.	.
Chr5	25172316	25173296	AT5TE90570	.	-	ATREP10D	Helitron	RC	980	short	1295	high	13953914	chromoarm	4494	no-CHH	no-CHH	.	.	.	.	.
Chr5	25178657	25179379	AT5TE90580	.	+	ATREP2A	Helitron	RC	723	short	116	medium	13960254	chromoarm	2180	.	.	.	.	.	.	.
Chr5	25179379	25179443	AT5TE90585	.	+	ATREP2A	Helitron	RC	64	tiny	116	medium	13960977	chromoarm	2116	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	25191058	25191888	AT5TE90620	.	-	ATREP10D	Helitron	RC	830	short	1295	high	13972656	chromoarm	80	no-CHH	no-CHH	.	.	.	.	.
Chr5	25203742	25204084	AT5TE90660	.	+	VANDAL17	MuDR	DNA	342	short	178	medium	13985340	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	25217426	25218163	AT5TE90710	.	+	ATDNA2T9C	MuDR	DNA	737	short	242	high	13999024	chromoarm	137	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	25227307	25227334	AT5TE90740	.	-	HELITRONY3	Helitron	RC	27	tiny	1399	high	14008905	chromoarm	525	no-CHH	no-CHH	.	.	.	.	.
Chr5	25227339	25228311	AT5TE90745	.	-	HELITRONY1B	Helitron	RC	972	short	414	high	14008937	chromoarm	0	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	25264326	25264396	AT5TE90870	.	-	ATREP15	Helitron	RC	70	tiny	1003	high	14045924	chromoarm	1293	no-CHH	no-CHH	.	.	.	.	.
Chr5	25264396	25265534	AT5TE90875	.	+	ATREP3	Helitron	RC	1138	short	1439	high	14045994	chromoarm	1363	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	25265534	25265590	AT5TE90880	.	+	ATREP3	Helitron	RC	56	tiny	1439	high	14047132	chromoarm	2501	no-CHH	no-CHH	.	.	.	.	.
Chr5	25304249	25304613	AT5TE91020	.	+	ATTIRX1B	.	DNA	365	short	44	low	14085846	chromoarm	241	.	.	.	.	.	.	.
Chr5	25308138	25308556	AT5TE91030	.	+	ATHAT10	HAT	DNA	418	short	35	low	14089736	chromoarm	166	no-CHH	no-CHH	.	.	.	.	.
Chr5	25308556	25308614	AT5TE91035	.	+	ATREP5	Helitron	RC	58	tiny	624	high	14090154	chromoarm	108	no-CHH	no-CHH	.	.	.	.	.
Chr5	25357837	25357900	AT5TE91210	.	-	HELITRONY1B	Helitron	RC	63	tiny	414	high	14139435	chromoarm	29	no-CHH	no-CHH	.	.	.	.	.
Chr5	25357900	25358273	AT5TE91215	.	+	ATREP5	Helitron	RC	373	short	624	high	14139498	chromoarm	92	no-CHH	no-CHH	.	.	.	.	.
Chr5	25360663	25361439	AT5TE91220	.	+	HELITRON2	Helitron	RC	776	short	194	medium	14142261	chromoarm	2	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	25360864	25361131	AT5TE91225	.	+	ATTIRTA1	Tc1	DNA	267	short	95	medium	14142462	chromoarm	203	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	25375106	25375210	AT5TE91270	.	-	ATMU10	MuDR	DNA	104	short	87	medium	14156704	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	25433386	25433540	AT5TE91490	.	-	VANDAL8	MuDR	DNA	154	short	123	medium	14214984	chromoarm	0	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	25440532	25440802	AT5TE91520	.	-	BRODYAGA1	MuDR	DNA	270	short	251	high	14222130	chromoarm	230	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	25444826	25445083	AT5TE91530	.	+	ATMU10	MuDR	DNA	257	short	87	medium	14226424	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	25447742	25447937	AT5TE91535	.	-	VANDAL17	MuDR	DNA	195	short	178	medium	14229340	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	25468536	25468577	AT5TE91610	.	+	ATREP15	Helitron	RC	41	tiny	1003	high	14250134	chromoarm	240	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	25468577	25469816	AT5TE91615	.	+	ARNOLDY1	MuDR	DNA	1239	short	237	high	14250175	chromoarm	281	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	25469816	25470192	AT5TE91620	.	+	ATTIR16T3A	.	DNA	376	short	106	medium	14251414	chromoarm	1520	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	25470368	25471129	AT5TE91625	.	+	ATREP3	Helitron	RC	761	short	1439	high	14251966	chromoarm	1468	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	25481631	25481744	AT5TE91660	.	+	ARNOLD1	MuDR	DNA	113	short	39	low	14263229	chromoarm	0	PolIV-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	25487268	25487590	AT5TE91680	.	+	BRODYAGA1A	MuDR	DNA	322	short	586	high	14268866	chromoarm	421	PolIV-RdDM	no-RdDM	.	.	.	.	.
Chr5	25509928	25510634	AT5TE91760	.	-	BRODYAGA2	MuDR	DNA	706	short	525	high	14291526	chromoarm	141	no-CHH	no-CHH	.	.	.	.	.
Chr5	25510634	25510769	AT5TE91765	.	-	ATDNA2T9C	MuDR	DNA	135	short	242	high	14292232	chromoarm	6	no-CHH	no-CHH	.	.	.	.	.
Chr5	25528687	25528821	AT5TE91830	.	-	HELITRONY2	Helitron	RC	134	short	198	medium	14310285	chromoarm	674	no-CHH	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	25528821	25529112	AT5TE91835	.	+	ATIS112A	Harbinger	DNA	291	short	173	medium	14310419	chromoarm	808	no-RdDM	no-CHH	LowExpressed	.	.	.	.
Chr5	25530524	25531267	AT5TE91840	.	-	ATREP19	.	DNA	743	short	189	medium	14312122	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	25531267	25531624	AT5TE91845	.	+	ATTIRX1A	.	DNA	357	short	63	medium	14312865	chromoarm	0	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	25531624	25532181	AT5TE91850	.	+	ATREP4	Helitron	RC	557	short	832	high	14313222	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	25622679	25622721	AT5TE92190	.	+	ATREP11	Helitron	RC	42	tiny	841	high	14404277	chromoarm	645	no-CHH	no-CHH	.	.	.	.	.
Chr5	25622721	25623275	AT5TE92195	.	-	ATREP10D	Helitron	RC	554	short	1295	high	14404319	chromoarm	687	no-CHH	no-CHH	.	.	.	.	.
Chr5	25650044	25650148	AT5TE92290	.	-	ATLINE1_6	L1	LINE	104	short	129	medium	14431642	chromoarm	629	no-CHH	no-CHH	.	.	.	.	.
Chr5	25657289	25657801	AT5TE92320	.	-	ATREP5	Helitron	RC	512	short	624	high	14438887	chromoarm	1343	no-CHH	no-CHH	.	.	.	.	.
Chr5	25657801	25658028	AT5TE92325	.	-	ATTIRTA1	Tc1	DNA	227	short	95	medium	14439399	chromoarm	1522	no-CHH	no-CHH	.	.	.	.	.
Chr5	25658028	25658162	AT5TE92330	.	-	BRODYAGA2	MuDR	DNA	134	short	525	high	14439626	chromoarm	1388	no-CHH	no-CHH	.	.	.	.	.
Chr5	25663051	25664361	AT5TE92340	.	-	ATREP10D	Helitron	RC	1310	short	1295	high	14444649	chromoarm	185	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	25716290	25716629	AT5TE92530	.	-	ATHILA6A	Gypsy	LTR	339	short	247	high	14497888	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	25770314	25770394	AT5TE92730	.	+	HELITRONY3	Helitron	RC	80	tiny	1399	high	14551912	chromoarm	54	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	25770394	25771215	AT5TE92735	.	-	ARNOLDY2	MuDR	DNA	821	short	288	high	14551992	chromoarm	134	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	25771215	25771240	AT5TE92740	.	+	HELITRONY1D	Helitron	RC	25	tiny	756	high	14552813	chromoarm	708	no-CHH	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	25824259	25824736	AT5TE92940	.	-	ATREP4	Helitron	RC	477	short	832	high	14605857	chromoarm	441	no-CHH	no-RdDM	.	.	.	.	.
Chr5	25844520	25844571	AT5TE93010	.	-	HELITRONY1C	Helitron	RC	51	tiny	120	medium	14626118	chromoarm	1139	no-CHH	no-CHH	.	.	.	.	.
Chr5	25844572	25844626	AT5TE93015	.	-	ATREP11	Helitron	RC	55	tiny	841	high	14626169	chromoarm	1190	.	.	.	.	.	.	.
Chr5	25844626	25845404	AT5TE93020	.	-	ATREP11	Helitron	RC	778	short	841	high	14626224	chromoarm	1245	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	25845404	25845681	AT5TE93025	.	+	META1	Copia	LTR	277	short	138	medium	14627002	chromoarm	2023	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	25846573	25847073	AT5TE93030	.	+	HELITRON4	Helitron	RC	500	short	199	medium	14628171	chromoarm	3192	no-CHH	no-CHH	.	.	.	.	.
Chr5	25851106	25851227	AT5TE93040	.	+	ARNOLD1	MuDR	DNA	121	short	39	low	14632704	chromoarm	22	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	25856001	25856067	AT5TE93050	.	-	TAG2	HAT	DNA	66	tiny	86	medium	14637599	chromoarm	670	no-RdDM	no-RdDM	LowExpressed	.	.	.	.
Chr5	25856072	25857252	AT5TE93055	.	-	ATHAT1	HAT	DNA	1180	short	105	medium	14637670	chromoarm	741	no-RdDM	no-RdDM	ExpressedAndAnnotated	25857846	25855403	-	transcript_id-"f6063fcd-0ad5-4f95-bfa7-cdbfd63ed654|6"
Chr5	25859788	25860140	AT5TE93060	.	-	ATREP3	Helitron	RC	352	short	1439	high	14641386	chromoarm	2828	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	25860229	25861082	AT5TE93065	.	+	ATREP4	Helitron	RC	853	short	832	high	14641827	chromoarm	1886	PolIV-and-RDR6-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	25861082	25861365	AT5TE93070	.	-	HELITRONY3	Helitron	RC	283	short	1399	high	14642680	chromoarm	1603	no-CHH	no-CHH	.	.	.	.	.
Chr5	25863198	25863492	AT5TE93075	.	+	ATHAT10	HAT	DNA	294	short	35	low	14644796	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	25891489	25891590	AT5TE93170	.	-	LIMPET1	MuDR	DNA	101	short	116	medium	14673087	chromoarm	88	no-CHH	no-CHH	.	.	.	.	.
Chr5	25892106	25892638	AT5TE93175	.	-	HELITRONY3	Helitron	RC	532	short	1399	high	14673704	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	25904574	25904622	AT5TE93210	.	-	HELITRONY3	Helitron	RC	48	tiny	1399	high	14686172	chromoarm	15	no-CHH	no-CHH	.	.	.	.	.
Chr5	25904622	25905908	AT5TE93215	.	+	ATREP3	Helitron	RC	1286	short	1439	high	14686220	chromoarm	63	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	25905921	25905999	AT5TE93220	.	+	HELITRONY3	Helitron	RC	78	tiny	1399	high	14687519	chromoarm	83	no-CHH	no-CHH	.	.	.	.	.
Chr5	25924158	25924201	AT5TE93290	.	-	ARNOLDY1	MuDR	DNA	43	tiny	237	high	14705756	chromoarm	1120	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	25924744	25925045	AT5TE93295	.	-	ATREP3	Helitron	RC	301	short	1439	high	14706342	chromoarm	327	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	25928261	25928354	AT5TE93305	.	-	LIMPET1	MuDR	DNA	93	tiny	116	medium	14709859	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	25931391	25932116	AT5TE93315	.	+	ATREP10D	Helitron	RC	725	short	1295	high	14712989	chromoarm	83	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	25935510	25935899	AT5TE93325	.	-	ATREP11A	Helitron	RC	389	short	95	medium	14717108	chromoarm	165	no-CHH	no-CHH	.	.	.	.	.
Chr5	25935899	25935936	AT5TE93330	.	-	ATREP6	Helitron	RC	37	tiny	181	medium	14717497	chromoarm	554	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	25935936	25936756	AT5TE93335	.	-	ATREP6	Helitron	RC	820	short	181	medium	14717534	chromoarm	496	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	25936756	25936865	AT5TE93340	.	-	HELITRONY3	Helitron	RC	109	short	1399	high	14718354	chromoarm	387	no-CHH	no-CHH	.	.	.	.	.
Chr5	25944879	25945049	AT5TE93370	.	+	VANDAL8	MuDR	DNA	170	short	123	medium	14726477	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	25955881	25955968	AT5TE93410	.	-	VANDAL13	MuDR	DNA	87	tiny	38	low	14737479	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	25982240	25982360	AT5TE93510	.	-	ATDNAI27T9B	MuDR	DNA	120	short	43	low	14763838	chromoarm	54	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	26000927	26001010	AT5TE93580	.	-	HELITRONY1D	Helitron	RC	83	tiny	756	high	14782525	chromoarm	0	no-CHH	no-CHH	.	.	.	.	.
Chr5	26015029	26015317	AT5TE93630	.	-	VANDAL8	MuDR	DNA	288	short	123	medium	14796627	chromoarm	525	no-CHH	no-RdDM	.	.	.	.	.
Chr5	26015317	26015975	AT5TE93635	.	+	ATREP2	Helitron	RC	658	short	164	medium	14796915	chromoarm	813	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	26015975	26016242	AT5TE93640	.	+	ATREP11	Helitron	RC	267	short	841	high	14797573	chromoarm	1160	no-CHH	no-CHH	.	.	.	.	.
Chr5	26069469	26069815	AT5TE93840	.	+	BRODYAGA2	MuDR	DNA	346	short	525	high	14851067	chromoarm	61	PolIV-and-RDR6-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	26069815	26070860	AT5TE93845	.	-	BRODYAGA2	MuDR	DNA	1045	short	525	high	14851413	chromoarm	407	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	26070249	26070282	AT5TE93850	.	+	BRODYAGA2	MuDR	DNA	33	tiny	525	high	14851847	chromoarm	841	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	26071015	26071069	AT5TE93855	.	+	ATREP11A	Helitron	RC	54	tiny	95	medium	14852613	chromoarm	1607	no-CHH	no-CHH	.	.	.	.	.
Chr5	26071069	26071197	AT5TE93860	.	+	HELITRONY3	Helitron	RC	128	short	1399	high	14852667	chromoarm	1661	no-CHH	no-CHH	.	.	.	.	.
Chr5	26071197	26071234	AT5TE93865	.	-	TAG3N1	HAT	DNA	37	tiny	97	medium	14852795	chromoarm	1789	no-CHH	no-CHH	.	.	.	.	.
Chr5	26071234	26071830	AT5TE93870	.	+	HELITRONY1D	Helitron	RC	596	short	756	high	14852832	chromoarm	1826	no-CHH	no-CHH	.	.	.	.	.
Chr5	26071830	26072494	AT5TE93875	.	+	ATREP11	Helitron	RC	664	short	841	high	14853428	chromoarm	2035	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	26095983	26096430	AT5TE93960	.	-	BRODYAGA2	MuDR	DNA	447	short	525	high	14877581	chromoarm	265	no-CHH	no-CHH	.	.	.	.	.
Chr5	26114621	26114952	AT5TE94030	.	+	ATREP3	Helitron	RC	331	short	1439	high	14896219	chromoarm	176	no-CHH	no-CHH	.	.	.	.	.
Chr5	26116499	26116676	AT5TE94035	.	+	ARNOLDY1	MuDR	DNA	177	short	237	high	14898097	chromoarm	2054	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	26116676	26117798	AT5TE94040	.	+	ATREP4	Helitron	RC	1122	short	832	high	14898274	chromoarm	1607	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	26121089	26121613	AT5TE94050	.	+	ATREP10D	Helitron	RC	524	short	1295	high	14902687	chromoarm	94	no-CHH	no-CHH	.	.	.	.	.
Chr5	26144167	26144674	AT5TE94130	.	-	ATREP10A	Helitron	RC	507	short	279	high	14925765	chromoarm	417	no-CHH	no-CHH	.	.	.	.	.
Chr5	26146171	26146561	AT5TE94135	.	-	HELITRONY3	Helitron	RC	390	short	1399	high	14927769	chromoarm	2068	PolIV-RdDM	PolIV-and-RDR6-RdDM	LowExpressed	.	.	.	.
Chr5	26161403	26161574	AT5TE94190	.	-	ATTIRTA1	Tc1	DNA	171	short	95	medium	14943001	chromoarm	256	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	26177778	26177897	AT5TE94250	.	+	ATHILA7	Gypsy	LTR	119	short	134	medium	14959376	chromoarm	105	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	26209460	26209503	AT5TE94370	.	+	AT9NMU1	MuDR	DNA	43	tiny	45	low	14991058	chromoarm	1498	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	26209503	26210488	AT5TE94375	.	-	AT9NMU1	MuDR	DNA	985	short	45	low	14991101	chromoarm	1541	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	26210488	26210517	AT5TE94380	.	-	AT9NMU1	MuDR	DNA	29	tiny	45	low	14992086	chromoarm	1566	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	26219518	26219655	AT5TE94410	.	+	ATREP5	Helitron	RC	137	short	624	high	15001116	chromoarm	0	no-CHH	no-RdDM	LowExpressed	.	.	.	.
Chr5	26258407	26258473	AT5TE94550	.	+	ATCOPIA67	Copia	LTR	66	tiny	15	low	15040005	chromoarm	2273	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr5	26258473	26260064	AT5TE94555	.	+	ATCOPIA67	Copia	LTR	1591	short	15	low	15040071	chromoarm	1407	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	26275979	26276014	AT5TE94610	.	-	ARNOLDY1	MuDR	DNA	35	tiny	237	high	15057577	chromoarm	115	PolIV-and-RDR6-RdDM	no-CHH	.	.	.	.	.
Chr5	26276014	26276186	AT5TE94615	.	-	ATREP3	Helitron	RC	172	short	1439	high	15057612	chromoarm	150	no-CHH	no-CHH	.	.	.	.	.
Chr5	26276187	26277560	AT5TE94620	.	+	HELITRONY1D	Helitron	RC	1374	short	756	high	15057784	chromoarm	322	.	.	.	.	.	.	.
Chr5	26278387	26278493	AT5TE94625	.	+	ATHAT1	HAT	DNA	106	short	105	medium	15059985	chromoarm	2523	no-CHH	no-CHH	.	.	.	.	.
Chr5	26290109	26290620	AT5TE94660	.	+	ATHATN2	HAT	DNA	511	short	46	low	15071707	chromoarm	1751	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	26414969	26415164	AT5TE95120	.	-	ATCOPIA76	Copia	LTR	195	short	7	low	15196567	chromoarm	541	no-RdDM	no-RdDM	.	.	.	.	.
Chr5	26415166	26415606	AT5TE95125	.	-	TAT1_ATH	Gypsy	LTR	440	short	87	medium	15196764	chromoarm	625	PolIV-RdDM	no-RdDM	ExpressedAndAnnotated	26415777	26415284	-	transcript_id-"be00f404-dfcc-4dc6-a0a2-590b19cc5df8|4"
Chr5	26415606	26415807	AT5TE95130	.	-	ATCOPIA32B	Copia	LTR	201	short	10	low	15197204	chromoarm	424	no-CHH	no-RdDM	LowExpressed	.	.	.	.
Chr5	26415979	26416051	AT5TE95135	.	-	ATCOPIA32	Copia	LTR	72	tiny	8	low	15197577	chromoarm	180	no-CHH	no-CHH	.	.	.	.	.
Chr5	26464777	26465111	AT5TE95310	.	+	RP1_AT	.	DNA	335	short	87	medium	15246374	chromoarm	903	.	.	.	.	.	.	.
Chr5	26482935	26485402	AT5TE95380	.	-	ATREP5	Helitron	RC	2467	medium	624	high	15264533	chromoarm	383	PolIV-RdDM	PolIV-RdDM	ExpressedAndAnnotated	26484847	26484569	-	transcript_id-"3d929421-8776-4021-9a46-76fa81759735|5"
Chr5	26497655	26497757	AT5TE95430	.	-	ATDNAI27T9A	MuDR	DNA	102	short	116	medium	15279253	chromoarm	346	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	26581730	26581752	AT5TE95740	.	-	HELITRONY3	Helitron	RC	22	tiny	1399	high	15363328	chromoarm	1678	no-CHH	no-CHH	.	.	.	.	.
Chr5	26581764	26583354	AT5TE95745	.	-	ARNOLDY1	MuDR	DNA	1590	short	237	high	15363362	chromoarm	76	PolIV-RdDM	PolIV-RdDM	LowExpressed	.	.	.	.
Chr5	26606655	26606925	AT5TE95830	.	-	HELITRONY1D	Helitron	RC	270	short	756	high	15388253	chromoarm	1403	no-CHH	no-CHH	.	.	.	.	.
Chr5	26606925	26607579	AT5TE95835	.	+	ATREP3	Helitron	RC	654	short	1439	high	15388523	chromoarm	749	PolIV-and-RDR6-RdDM	no-RdDM	.	.	.	.	.
Chr5	26612975	26613185	AT5TE95845	.	-	ATREP15	Helitron	RC	210	short	1003	high	15394573	chromoarm	275	no-CHH	no-CHH	.	.	.	.	.
Chr5	26624302	26625072	AT5TE95880	.	-	BRODYAGA2	MuDR	DNA	770	short	525	high	15405900	chromoarm	82	no-CHH	no-CHH	.	.	.	.	.
Chr5	26635863	26636432	AT5TE95920	.	-	ATREP10D	Helitron	RC	569	short	1295	high	15417461	chromoarm	101	no-CHH	no-CHH	.	.	.	.	.
Chr5	26678577	26679146	AT5TE96080	.	-	ATREP6	Helitron	RC	569	short	181	medium	15460175	chromoarm	789	PolIV-RdDM	no-CHH	.	.	.	.	.
Chr5	26679146	26679284	AT5TE96085	.	+	HELITRONY1D	Helitron	RC	138	short	756	high	15460744	chromoarm	1358	no-CHH	no-CHH	.	.	.	.	.
Chr5	26703558	26703931	AT5TE96170	.	+	BRODYAGA1A	MuDR	DNA	373	short	586	high	15485156	chromoarm	1027	no-CHH	no-CHH	.	.	.	.	.
Chr5	26745764	26746528	AT5TE96330	.	-	ATREP10D	Helitron	RC	764	short	1295	high	15527362	chromoarm	148	no-CHH	no-CHH	.	.	.	.	.
Chr5	26746528	26746630	AT5TE96335	.	+	HELITRONY1D	Helitron	RC	102	short	756	high	15528126	chromoarm	46	no-CHH	no-CHH	.	.	.	.	.
Chr5	26786856	26786937	AT5TE96480	.	-	ATREP3	Helitron	RC	81	tiny	1439	high	15568454	chromoarm	518	no-CHH	no-CHH	.	.	.	.	.
Chr5	26786937	26787042	AT5TE96485	.	-	ATREP2	Helitron	RC	105	short	164	medium	15568535	chromoarm	599	no-CHH	no-CHH	.	.	.	.	.
Chr5	26787042	26787652	AT5TE96490	.	-	ATREP2	Helitron	RC	610	short	164	medium	15568640	chromoarm	177	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	26810558	26811046	AT5TE96580	.	+	BRODYAGA1A	MuDR	DNA	488	short	586	high	15592156	chromoarm	869	no-CHH	no-CHH	.	.	.	.	.
Chr5	26829782	26829818	AT5TE96650	.	-	ATREP11	Helitron	RC	36	tiny	841	high	15611380	chromoarm	121	no-CHH	no-CHH	.	.	.	.	.
Chr5	26829818	26831418	AT5TE96655	.	-	ARNOLDY1	MuDR	DNA	1600	short	237	high	15611416	chromoarm	157	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	26831418	26831624	AT5TE96660	.	+	ATREP11	Helitron	RC	206	short	841	high	15613016	chromoarm	52	no-CHH	no-CHH	.	.	.	.	.
Chr5	26835011	26835916	AT5TE96670	.	+	HELITRONY3	Helitron	RC	905	short	1399	high	15616609	chromoarm	396	PolIV-RdDM	PolIV-and-RDR6-RdDM	.	.	.	.	.
Chr5	26858060	26858401	AT5TE96750	.	-	ATENSPM6	En-Spm	DNA	341	short	151	medium	15639658	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	26858401	26858423	AT5TE96755	.	-	ATDNAI27T9A	MuDR	DNA	22	tiny	116	medium	15639999	chromoarm	0	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	26880289	26881037	AT5TE96830	.	-	ATREP10B	Helitron	RC	748	short	491	high	15661887	chromoarm	118	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	26881037	26881116	AT5TE96835	.	+	ATREP1	Helitron	RC	79	tiny	498	high	15662635	chromoarm	39	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	26891421	26891550	AT5TE96870	.	-	ATREP10D	Helitron	RC	129	short	1295	high	15673019	chromoarm	2909	no-CHH	no-CHH	.	.	.	.	.
Chr5	26891558	26893445	AT5TE96875	.	+	ATREP1	Helitron	RC	1887	short	498	high	15673156	chromoarm	1450	PolIV-RdDM	PolIV-RdDM	.	.	.	.	.
Chr5	26893445	26893817	AT5TE96880	.	-	ATREP10D	Helitron	RC	372	short	1295	high	15675043	chromoarm	1078	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	26893817	26893895	AT5TE96885	.	-	ATREP11	Helitron	RC	78	tiny	841	high	15675415	chromoarm	1000	no-CHH	no-CHH	LowExpressed	.	.	.	.
Chr5	26925226	26925333	AT5TE97000	.	+	ATHILA8B	Gypsy	LTR	107	short	78	medium	15706824	chromoarm	1501	no-CHH	no-CHH	.	.	.	.	.
Chr5	26965907	26966653	AT5TE97150	.	-	ATREP9	Helitron	RC	746	short	201	high	15747505	chromoarm	187	no-CHH	no-CHH	.	.	.	.	.