##fileformat=VCFv4.2
##fileDate=20090805
##source=myImputationProgramV3.1
##reference=file:///seq/references/1000GenomesPilot-NCBI36.fasta ##contig=<ID=20,length=62435964,assembly=B36,md5=f126cdf8a6e0c7f379d618ff66beb2da,species="Homo sapiens",taxonomy=x> ##phasing=partial
##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of Samples With Data"> ##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth"> ##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency"> ##INFO=<ID=AA,Number=1,Type=String,Description="Ancestral Allele"> ##INFO=<ID=DB,Number=0,Type=Flag,Description="dbSNP membership, build 129"> ##INFO=<ID=H2,Number=0,Type=Flag,Description="HapMap2 membership"> ##FILTER=<ID=q10,Description="Quality below 10"> ##FILTER=<ID=s50,Description="Less than 50% of samples have data"> ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality"> ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth"> ##FORMAT=<ID=HQ,Number=2,Type=Integer,Description="Haplotype Quality">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	NA00001
20	14370	rs6054257	G	A	29	PASS	NS=3;DP=14;AF=0.5;DB;H2	GT:GQ:DP:HQ	0/1:48:1:51,51
20	17330	.	T	A	3	q10	NS=3;DP=11;AF=0.017	GT:GQ:DP:HQ	0/1:40:1:43,43
20	23145	rs6040355	A	T	40	PASS	NS=3;DP=14;AF=0.5;DB;H2	GT:GQ:DP:HQ	1/1:48:1:51,51
20	61423	.	T	A	30	PASS	NS=3;DP=14;AF=0.5;DB;H2	GT:GQ:DP:HQ	0/1:48:1:51,51
20	63475	.	C	G	25	PASS	NS=3;DP=14;AF=0.5;DB;H2	GT:GQ:DP:HQ	1/1:48:1:51,51
20	82739	.	GG	G	27	PASS	NS=3;DP=21;AF=0.5;DB;H2	GT:GQ:DP:HQ	0/1:48:1:51,51
20	99384	rs6054299	G	A	29	PASS	NS=3;DP=14;AF=0.5;DB;H2	GT:GQ:DP:HQ	0|0:48:1:51,51
20	102423	.	ATC	A	37	PASS	NS=3;DP=22;AF=0.5;DB;H2	GT:GQ:DP:HQ	0/1:48:1:51,51
20	121287	.	G	GAA	33	PASS	NS=3;DP=14;AF=0.5;DB;H2	GT:GQ:DP:HQ	0/1:48:1:51,51
20	135827	.	CT	C	31	PASS	NS=3;DP=13;AF=0.5;DB;H2	GT:GQ:DP:HQ	1/1:48:1:51,51
20	149720	rs6228174	G	A	29	PASS	NS=3;DP=14;AF=0.5;DB;H2	GT:GQ:DP:HQ	0/1:48:1:51,51
20	167393	.	A	C	29	PASS	NS=3;DP=34;AF=0.5;DB;H2	GT:GQ:DP:HQ	1/1:48:1:51,51
20	171837	.	G	A	4	q10	NS=3;DP=25;AF=0.5;DB;H2	GT:GQ:DP:HQ	1/1:48:1:51,51
20	191038	.	T	C	29	PASS	NS=3;DP=31;AF=0.5;DB;H2	GT:GQ:DP:HQ	0/1:48:1:51,51
20	212874	.	C	G	29	PASS	NS=3;DP=25;AF=0.5;DB;H2	GT:GQ:DP:HQ	0/1:48:1:51,51
20	218927	.	AG	A	29	PASS	NS=3;DP=22;AF=0.5;DB;H2	GT:GQ:DP:HQ	0/1:48:1:51,51
20	222015	rs7736281	G	GA	29	PASS	NS=3;DP=14;AF=0.5;DB;H2	GT:GQ:DP:HQ	1/1:48:1:51,51
20	235719	.	G	A	5	q10	NS=3;DP=19;AF=0.5;DB;H2	GT:GQ:DP:HQ	1/1:48:1:51,51
20	249171	.	T	G	29	PASS	NS=3;DP=11;AF=0.5;DB;H2	GT:GQ:DP:HQ	1/1:48:1:51,51
20	271029	.	C	T	29	PASS	NS=3;DP=19;AF=0.5;DB;H2	GT:GQ:DP:HQ	1/1:48:1:51,51