has BrAPI synonym
has exact synonym
has ISA synonym
has MIAPPE synonym
has ontology recommendation
has related synonym
derives from
has affiliation
has biological material
has contact institution
has country
has country of origin
has data file
has environment
has environment parameter
has event
has factor
has factor value
has growth facility
has location
has material source
has method
has modality
has observation
has observation level
has observation level hierarchy
has observed subject
has part
has participating institution
has person with role
has role
has scale
has spatial distribution
has spatial distribution type
has experimental design
has sublevel
has superlevel
has trait
has variable
is modality of
is role of
is role of person in
is subject of observation
part of
has abbreviation
has address
The altitude of a location in metres
has altitude
has associated publication
has collection date
An ISO 3166-1 country code with either 2 or 3 letters (alpha-2 or alpha-3).
has country code
has cultural practices
An external identifier that is specifically a DOI, given either as just the DOI code (string) or as an URI. The entity <=> DOI relation should be bijective.
has DOI
An external identifier that is specifically a database identifier.
has database identifier
has date-time
has description
The location of the file in the form of a URI or, if the file is contained within a local MIAPPE submission (e.g. ISA-Tab), a path or file name.
has digital location
The e-mail address of a person
has e-mail contact
has end date-time
Used in BrAPI Phenotypes call
has entry number
has entry type
A map of the experimental design of the study, in gis or excel
has experimental design map
An identifier from another public resource, such as an ontology or database, either in the form of an accession number, or in the form of a URI. An external identifier should be globally unique.
has external identifier
has genus
A unique identifier for a germplasm.
has germplasm accession number
has identifier
Name of any subtaxa level, including variety, crossing name, etc. It can be used to store any additional taxonomic identifier. Either free text description or key-value pair list format (the key is the name of the rank and the value is the value of the rank). Ranks can be among the following terms: subspecies, cultivar, variety, subvariety, convariety, group, subgroup, hybrid, line, form, subform. For MCPD compliance, the following abbreviations are allowed: ‘subsp.’ (subspecies); ‘convar.’ (convariety); ‘var.’ (variety); ‘f.’ (form); ‘Group’ (cultivar group).
has infraspecific name
A code or acronym of an institution.
has institute code
An identifier used internally, either only in the MIAPPE submission itself, or also on a non-public database whence the information was retrieved. An internal identifier need only be unique among entities of the same type within a MIAPPE submission.
has internal identifier
The latitude of a location in degrees, in the decimal system
has latitude
has license
The longitude of a location in degrees, in the decimal system
has longitude
has MIAPPE version
An identifier used specifically for biological materials (and their sources) which can be internal or external. For material sources, it usually follows one of two forms: a key-value pair comprising the name/identifer of the repository from which the material was sourced plus the accession number of the repository for that material, or, where an accession number has not been assigned, but the material has been derived from the crossing of known accessions, "mother_accession X father_accession" (father_accession can be "UNKNOWN").
has material identifier
has title
has name
has observation unit description
has plant anatomical entity
has plant structure development stage
has preprocessing
has public release date
has season
has specific epithet
has species
has species authority
has start date-time
has submission date
has subtaxon
has subtaxon authority
An external identifier for a taxon that is either an NCBI Taxon identifier or an equivalent.
has taxon identifier
has time scale
has type
has uncertainty
has value
has version
is active
GPS location
germplasm
An organism that was the subject of the study and/or was observed in an observation unit.
biological material
organism
A country in the world that either presently exists (i.e. is recognized in status by most entities) or existed at the time of the study.
country
A description of and link to a file or data stream holding some or all of the data described by the MIAPPE submission.
data file
The set of environmental parameters or experimental conditions that were kept constant during the study and did not change betweeen observation units or assays.
environment
A parameter of the environment which is represented by a name and a value.
environment parameter
time factor
A discrete change to the state of one or more observation units that happened at a given point in time, be it deliberate or inadvertent.
event
A condition that varies between observation units, by taking different values or modalities, assessing the effect of which is the goal of the study. A factor may be biotic (pest, disease interaction) or abiotic (treatment, cultural practice) in nature. It must have at least two values or modalities.
factor
A value or modality of a factor.
factor value
A facility in which plants can be grown, such as a field or greenhouse.
growth facility
An institution (academic or industrial) involved in the investigation or study.
institution
trial
A research programme with defined aims, which can vary in scale from a single experiment, to a grant-funded programme or various components comprising a peer-reviewed publication.
investigation
investigation title
investigation unique ID
A physical location, typically on planet Earth, identified by GPS coordinates and/or name and address.
location
An organism from which the organism(s) used in the study were derived. It should be identified with a unique external identifier (such as germplasm accession number) and possibly a DOI.
material source
method
named location
observation
observation level
observation level hierarchy
experiment unit
observation unit
observation variable
assay
observed variable
person
role
sample
scale
spatial coordinate
spatial distribution
spatial distribution type
experimental design
experiment
A study (or experiment) comprises a series of assays (or measurements) of one or more types, undertaken to answer a particular biological question. It is recommended that a Study have a description.
study
study title
study unique ID
Name of the (plant or environmental) trait under observation
trait
The global spatial coordinate altitude (in meters)
The local spatial coordinate identifying the column
The global spatial coordinate latitude (in degrees in the decimal system)
The local spatial coordinate identifying the row
The local spatial coordinate x (numeric, discrete)
The local spatial coordinate x (in meters)
The local spatial coordinate y (numeric, discrete)
The local spatial coordinate y (in meters)
The local spatial coordinate z (numeric, discrete)
The local spatial coordinate z (in meters)