sample geneA chrA posA ortA featureA geneB chrB posB ortB featureB sv_ort readsA readsB matchA matchB repeatA repeatB coverageA coverageB ratioA ratioB qposA qposB contig type score rating medal functional effect frame sv_refseqA sv_refseqA_codon sv_refseqA_exon sv_refseqA_anchor_type sv_refseqA_coding_base_number sv_refseqA_last_coding_base_number sv_refseqA_AA_index sv_refseqA_contig_index sv_refseqB sv_refseqB_codon sv_refseqB_exon sv_refseqB_anchor_type sv_refseqB_coding_base_number sv_refseqB_last_coding_base_number sv_refseqB_AA_index sv_refseqB_contig_index sv_AA sv_desc sv_processing_exception sv_general_info sv_interstitial_AA sv_frame_index SJBALL020589_D1 CD74 chr5 149786753 - coding CD74 chr5 149792317 - coding > 37 614 69 81 0.566 0.000 1337 23908 0.001 0.517 158 220 TGCTCATTGTTGGAGATAAGGTCGCGCTGGTCATCCATGACTGGCTTCTGATCTTCCCGACAGCTCCTGCTTCTCCTCCTGTGCATCTGGCCACCACCGCCTACTTCCTGTACCAGCAGCAGGGCCGGCTGGACAAACTGACAGTCACCTCCCAGAAGCTTCATGCGCAGGTTCTCCAGCTGCAGGTTCTGGGAGGTGACTGTCAGTTTGTCCAGCCGGCCCAGATGCACAGGAGGAGAAGCAGGAGCTGTCGGGAAGATCAGAAGCCAGTCATGGATGACCAGCGCGACCTTATCTCCA Internal_dup 20750.34 HQ 2 ITD 1,1,1,1,1,1,1,1,1 NM_001025158,NM_001025159,NM_004355,NM_001025158,NM_001025159,NM_004355,NM_001025158,NM_001025159,NM_004355 87,87,87,87,87,87,87,87,87 2,2,2,2,2,2,2,2,2 tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 260,260,260,260,260,260,260,260,260 50,50,50,50,50,50,50,50,50 154,154,154,154,154,154,154,154,154 NM_001025158,NM_001025158,NM_001025158,NM_001025159,NM_001025159,NM_001025159,NM_004355,NM_004355,NM_004355 -1,-1,-1,-1,-1,-1,-1,-1,-1 1,1,1,1,1,1,1,1,1 tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple ,,,,,,,, 483,483,483,891,891,891,699,699,699 74,74,74,74,74,74,74,74,74 224,224,224,224,224,224,224,224,224 LIVGDKVALVIHDWLLIFPTAPASPPVHLATTAYFLYQQQGRLDKLTVTSQKLHAQVLQLQVLGGDCQFVQPAQMHRRRSRSCREDQKPVMDDQRDLIS,LIVGDKVALVIHDWLLIFPTAPASPPVHLATTAYFLYQQQGRLDKLTVTSQKLHAQVLQLQVLGGDCQFVQPAQMHRRRSRSCREDQKPVMDDQRDLIS,LIVGDKVALVIHDWLLIFPTAPASPPVHLATTAYFLYQQQGRLDKLTVTSQKLHAQVLQLQVLGGDCQFVQPAQMHRRRSRSCREDQKPVMDDQRDLIS,LIVGDKVALVIHDWLLIFPTAPASPPVHLATTAYFLYQQQGRLDKLTVTSQKLHAQVLQLQVLGGDCQFVQPAQMHRRRSRSCREDQKPVMDDQRDLIS,LIVGDKVALVIHDWLLIFPTAPASPPVHLATTAYFLYQQQGRLDKLTVTSQKLHAQVLQLQVLGGDCQFVQPAQMHRRRSRSCREDQKPVMDDQRDLIS,LIVGDKVALVIHDWLLIFPTAPASPPVHLATTAYFLYQQQGRLDKLTVTSQKLHAQVLQLQVLGGDCQFVQPAQMHRRRSRSCREDQKPVMDDQRDLIS,LIVGDKVALVIHDWLLIFPTAPASPPVHLATTAYFLYQQQGRLDKLTVTSQKLHAQVLQLQVLGGDCQFVQPAQMHRRRSRSCREDQKPVMDDQRDLIS,LIVGDKVALVIHDWLLIFPTAPASPPVHLATTAYFLYQQQGRLDKLTVTSQKLHAQVLQLQVLGGDCQFVQPAQMHRRRSRSCREDQKPVMDDQRDLIS,LIVGDKVALVIHDWLLIFPTAPASPPVHLATTAYFLYQQQGRLDKLTVTSQKLHAQVLQLQVLGGDCQFVQPAQMHRRRSRSCREDQKPVMDDQRDLIS CD74:NM_001025158[1,2]-CD74:NM_001025158[1,6];CD74:NM_001025159[1,2]-CD74:NM_001025158[1,6];CD74:NM_004355[1,2]-CD74:NM_001025158[1,6];CD74:NM_001025158[1,2]-CD74:NM_001025159[1,9];CD74:NM_001025159[1,2]-CD74:NM_001025159[1,9];CD74:NM_004355[1,2]-CD74:NM_001025159[1,9];CD74:NM_001025158[1,2]-CD74:NM_004355[1,8];CD74:NM_001025159[1,2]-CD74:NM_004355[1,8];CD74:NM_004355[1,2]-CD74:NM_004355[1,8] geneB_transcripts=NM_001025158,NM_001025159,NM_004355;geneb_utr_codons=2 KLHAQVLQLQVLGGDCQFVQPAQ,KLHAQVLQLQVLGGDCQFVQPAQ,KLHAQVLQLQVLGGDCQFVQPAQ,KLHAQVLQLQVLGGDCQFVQPAQ,KLHAQVLQLQVLGGDCQFVQPAQ,KLHAQVLQLQVLGGDCQFVQPAQ,KLHAQVLQLQVLGGDCQFVQPAQ,KLHAQVLQLQVLGGDCQFVQPAQ,KLHAQVLQLQVLGGDCQFVQPAQ 2,2,2,2,2,2,2,2,2 SJBALL020589_D1 CD74 chr5 149786783 - coding CD74 chr5 149792317 - coding > 8 468 83 84 0.024 0.000 334 3003 0.001 0.517 103 104 ACACGACGCTCTTCCGATCTACACAGGCTTTTCCATCCTGGTGACTCTGCTCCTCGCTGGCCAGGCCACCACCGCCTACTTCCTGTACCAGCAGCAGGGCCGGCCCAGATGCACAGGAGGAGAAGCAGGAGCTGTCGGGAAGATCAGAAGCCAGTCATGGATGACCAGCGCGACCTTATCTCCAACA Internal_dup 5864.68 HQ 2 ITD 0,0,0,0,0,0,0,0,0,2,2,2 NM_001025158,NM_001025159,NM_004355,NM_001025158,NM_001025159,NM_004355,NM_001025158,NM_001025159,NM_004355,,, ,,,,,,,,,,, 2,2,2,2,2,2,2,2,2,,, ,,,,,,,,,,, 230,230,230,230,230,230,230,230,230,,, ,,,,,,,,,,, ,,,,,,,,,,, NM_001025158,NM_001025158,NM_001025158,NM_001025159,NM_001025159,NM_001025159,NM_004355,NM_004355,NM_004355,NM_001025158,NM_001025159,NM_004355 -1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1 1,1,1,1,1,1,1,1,1,,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple ,,,,,,,,,,, 483,483,483,891,891,891,699,699,699,483,891,699 36,36,36,36,36,36,36,36,36,,, ,,,,,,,,,,, TRRSSDLHRLFHPGDSAPRWPGHHRLLPVPAAGPAQMHRRRSRSCREDQKPVMDDQRDLISN,TRRSSDLHRLFHPGDSAPRWPGHHRLLPVPAAGPAQMHRRRSRSCREDQKPVMDDQRDLISN,TRRSSDLHRLFHPGDSAPRWPGHHRLLPVPAAGPAQMHRRRSRSCREDQKPVMDDQRDLISN,TRRSSDLHRLFHPGDSAPRWPGHHRLLPVPAAGPAQMHRRRSRSCREDQKPVMDDQRDLISN,TRRSSDLHRLFHPGDSAPRWPGHHRLLPVPAAGPAQMHRRRSRSCREDQKPVMDDQRDLISN,TRRSSDLHRLFHPGDSAPRWPGHHRLLPVPAAGPAQMHRRRSRSCREDQKPVMDDQRDLISN,TRRSSDLHRLFHPGDSAPRWPGHHRLLPVPAAGPAQMHRRRSRSCREDQKPVMDDQRDLISN,TRRSSDLHRLFHPGDSAPRWPGHHRLLPVPAAGPAQMHRRRSRSCREDQKPVMDDQRDLISN,TRRSSDLHRLFHPGDSAPRWPGHHRLLPVPAAGPAQMHRRRSRSCREDQKPVMDDQRDLISN,,, CD74:NM_001025158[1,2]-CD74:NM_001025158[1,6];CD74:NM_001025159[1,2]-CD74:NM_001025158[1,6];CD74:NM_004355[1,2]-CD74:NM_001025158[1,6];CD74:NM_001025158[1,2]-CD74:NM_001025159[1,9];CD74:NM_001025159[1,2]-CD74:NM_001025159[1,9];CD74:NM_004355[1,2]-CD74:NM_001025159[1,9];CD74:NM_001025158[1,2]-CD74:NM_004355[1,8];CD74:NM_001025159[1,2]-CD74:NM_004355[1,8];CD74:NM_004355[1,2]-CD74:NM_004355[1,8];;; geneB_transcripts=NM_001025158,NM_001025159,NM_004355;geneb_utr_codons=2 ,,,,,,,,,,, 0,0,0,0,0,0,0,0,0,,, SJBALL020589_D1 PAX5 chr9 37033986 - coding ZCCHC7 chr9 37260450 + intron > 33 8 83 175 0.024 0.000 4247 251 0.127 0.066 83 83 CTTTTCCCTGTCCATTCCATCAAGTCCTGAAAAATCAAAATGGATTTAGAGAAAAATTATCCGACTCCTCGGACCAGCAGGACAGTACAAGTTCAAAGTCATTAACAAGTTCAAGATGGCGACAAAGGACCGTTCAACTAAATAGAGGCCCCTTTTGAGAGCAAGCCCATGTGTGACTGCACAAGTTACATACCTGGAGAAGATGGTATAAACTGGTCCATCAGTGACAAAGACATTGAGGCCCAGATAGCTAATAAC ITX 4361.34 HQ 4 CLoss 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3,3,3,3 NM_001280547,NM_001280548,NM_001280549,NM_001280550,NM_001280551,NM_001280552,NM_001280553,NM_001280554,NM_001280555,NM_001280556,NM_016734,NM_001280547,NM_001280548,NM_001280549,NM_001280550,NM_001280551,NM_001280552,NM_001280553,NM_001280554,NM_001280555,NM_001280556,NM_016734,NM_001280547,NM_001280548,NM_001280549,NM_001280550,NM_001280551,NM_001280552,NM_001280553,NM_001280554,NM_001280555,NM_001280556,NM_016734,NM_001280547,NM_001280548,NM_001280549,NM_001280550,NM_001280551,NM_001280552,NM_001280553,NM_001280554,NM_001280555,NM_001280556,NM_016734,,,, 16,16,16,16,,16,16,16,16,,16,16,16,16,16,,16,16,16,16,,16,16,16,16,16,,16,16,16,16,,16,16,16,16,16,,16,16,16,16,,16,,,, 1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,,,, tuple,tuple,tuple,tuple,,tuple,tuple,tuple,tuple,,tuple,tuple,tuple,tuple,tuple,,tuple,tuple,tuple,tuple,,tuple,tuple,tuple,tuple,tuple,,tuple,tuple,tuple,tuple,,tuple,tuple,tuple,tuple,tuple,,tuple,tuple,tuple,tuple,,tuple,,,, 43,43,43,43,,43,43,43,43,,43,43,43,43,43,,43,43,43,43,,43,43,43,43,43,,43,43,43,43,,43,43,43,43,43,,43,43,43,43,,43,,,, 27,27,27,27,,27,27,27,27,,27,27,27,27,27,,27,27,27,27,,27,27,27,27,27,,27,27,27,27,,27,27,27,27,27,,27,27,27,27,,27,,,, 83,83,83,83,,83,83,83,83,,83,83,83,83,83,,83,83,83,83,,83,83,83,83,83,,83,83,83,83,,83,83,83,83,83,,83,83,83,83,,83,,,, NM_001289119,NM_001289119,NM_001289119,NM_001289119,NM_001289119,NM_001289119,NM_001289119,NM_001289119,NM_001289119,NM_001289119,NM_001289119,NM_001289120,NM_001289120,NM_001289120,NM_001289120,NM_001289120,NM_001289120,NM_001289120,NM_001289120,NM_001289120,NM_001289120,NM_001289120,NM_001289121,NM_001289121,NM_001289121,NM_001289121,NM_001289121,NM_001289121,NM_001289121,NM_001289121,NM_001289121,NM_001289121,NM_001289121,NM_032226,NM_032226,NM_032226,NM_032226,NM_032226,NM_032226,NM_032226,NM_032226,NM_032226,NM_032226,NM_032226,NM_001289119,NM_001289120,NM_001289121,NM_032226 204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204 3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,,,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611,611 1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632 65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,65,,,, 195,195,195,195,,195,195,195,195,,195,195,195,195,195,,195,195,195,195,,195,195,195,195,195,,195,195,195,195,,195,195,195,195,195,,195,195,195,195,,195,,,, LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,LFPVHSIKS*KIKMDLEKNYPTPRTSRTVQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIPGEDGINWSISDKDIEAQIANN,,,, PAX5:NM_001280547[1,1]-ZCCHC7:NM_001289119[3,9];PAX5:NM_001280548[1,1]-ZCCHC7:NM_001289119[3,9];PAX5:NM_001280549[1,1]-ZCCHC7:NM_001289119[3,9];PAX5:NM_001280550[1,1]-ZCCHC7:NM_001289119[3,9];PAX5:NM_001280551[1,1]-ZCCHC7:NM_001289119[3,9];PAX5:NM_001280552[1,1]-ZCCHC7:NM_001289119[3,9];PAX5:NM_001280553[1,1]-ZCCHC7:NM_001289119[3,9];PAX5:NM_001280554[1,1]-ZCCHC7:NM_001289119[3,9];PAX5:NM_001280555[1,1]-ZCCHC7:NM_001289119[3,9];PAX5:NM_001280556[1,1]-ZCCHC7:NM_001289119[3,9];PAX5:NM_016734[1,1]-ZCCHC7:NM_001289119[3,9];PAX5:NM_001280547[1,1]-ZCCHC7:NM_001289120[3,9];PAX5:NM_001280548[1,1]-ZCCHC7:NM_001289120[3,9];PAX5:NM_001280549[1,1]-ZCCHC7:NM_001289120[3,9];PAX5:NM_001280550[1,1]-ZCCHC7:NM_001289120[3,9];PAX5:NM_001280551[1,1]-ZCCHC7:NM_001289120[3,9];PAX5:NM_001280552[1,1]-ZCCHC7:NM_001289120[3,9];PAX5:NM_001280553[1,1]-ZCCHC7:NM_001289120[3,9];PAX5:NM_001280554[1,1]-ZCCHC7:NM_001289120[3,9];PAX5:NM_001280555[1,1]-ZCCHC7:NM_001289120[3,9];PAX5:NM_001280556[1,1]-ZCCHC7:NM_001289120[3,9];PAX5:NM_016734[1,1]-ZCCHC7:NM_001289120[3,9];PAX5:NM_001280547[1,1]-ZCCHC7:NM_001289121[3,9];PAX5:NM_001280548[1,1]-ZCCHC7:NM_001289121[3,9];PAX5:NM_001280549[1,1]-ZCCHC7:NM_001289121[3,9];PAX5:NM_001280550[1,1]-ZCCHC7:NM_001289121[3,9];PAX5:NM_001280551[1,1]-ZCCHC7:NM_001289121[3,9];PAX5:NM_001280552[1,1]-ZCCHC7:NM_001289121[3,9];PAX5:NM_001280553[1,1]-ZCCHC7:NM_001289121[3,9];PAX5:NM_001280554[1,1]-ZCCHC7:NM_001289121[3,9];PAX5:NM_001280555[1,1]-ZCCHC7:NM_001289121[3,9];PAX5:NM_001280556[1,1]-ZCCHC7:NM_001289121[3,9];PAX5:NM_016734[1,1]-ZCCHC7:NM_001289121[3,9];PAX5:NM_001280547[1,1]-ZCCHC7:NM_032226[3,9];PAX5:NM_001280548[1,1]-ZCCHC7:NM_032226[3,9];PAX5:NM_001280549[1,1]-ZCCHC7:NM_032226[3,9];PAX5:NM_001280550[1,1]-ZCCHC7:NM_032226[3,9];PAX5:NM_001280551[1,1]-ZCCHC7:NM_032226[3,9];PAX5:NM_001280552[1,1]-ZCCHC7:NM_032226[3,9];PAX5:NM_001280553[1,1]-ZCCHC7:NM_032226[3,9];PAX5:NM_001280554[1,1]-ZCCHC7:NM_032226[3,9];PAX5:NM_001280555[1,1]-ZCCHC7:NM_032226[3,9];PAX5:NM_001280556[1,1]-ZCCHC7:NM_032226[3,9];PAX5:NM_016734[1,1]-ZCCHC7:NM_032226[3,9];;;; geneB_transcripts=NM_001289119,NM_001289120,NM_001289121,NM_032226;not_inframe_due_to_intermediate_stop_codon VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,,VQVQSH*QVQDGDKGPFN*IEAPFESKPMCDCTSYIP,,,, 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,,,, SJBALL020589_D1 PAX5 chr9 37033982 - coding ZCCHC7 chr9 37302188 + coding > 31 63 129 293 0.000 0.017 1041 1903 0.127 0.051 129 131 AAAAAAAAAAAAAAAAAAAAAAAAAGGCACAAAAAAGTGGAAACTTTTCCCTGTCCATTCCATCAAGTCCTGAAAAATCAAAATGGATTTAGAGAAAAATTATCCGACTCCTCGGACCAGCAGGACAGGAGAAGATGGTATAAACTGGTCCATCAGTGACAAAGACATTGAGGCCCAGATAGCTAATAACCGAACACCTGGAAGATGGACCCAGCGGTACTATTCAGCCAACAAAAACATTATCTGTAGAAATTGTGACAAACGTGGTCATTTATCAAAAAACTGCCCCTTACCACGAAAAGTTCGTCGCTGCTTCCTGTGCTCCAGGAGAGGACATCTCCTGTATTCCTGTCCAGCCCCCCTTTGCGAATACTGTCCTGTGCCTAAGATGTTGGACCACTCATGTCTTTTCAGACATTCCTGG ITX 3486.65 HQ 4 Fusion 1,1,1,1,0,1,1,1,1,0,1,1,1,1,1,0,1,1,1,1,0,1,1,1,1,1,0,1,1,1,1,0,1,1,1,1,1,0,1,1,1,1,0,1 NM_001280547,NM_001280548,NM_001280549,NM_001280550,NM_001280551,NM_001280552,NM_001280553,NM_001280554,NM_001280555,NM_001280556,NM_016734,NM_001280547,NM_001280548,NM_001280549,NM_001280550,NM_001280551,NM_001280552,NM_001280553,NM_001280554,NM_001280555,NM_001280556,NM_016734,NM_001280547,NM_001280548,NM_001280549,NM_001280550,NM_001280551,NM_001280552,NM_001280553,NM_001280554,NM_001280555,NM_001280556,NM_016734,NM_001280547,NM_001280548,NM_001280549,NM_001280550,NM_001280551,NM_001280552,NM_001280553,NM_001280554,NM_001280555,NM_001280556,NM_016734 17,17,17,17,,17,17,17,17,,17,17,17,17,17,,17,17,17,17,,17,17,17,17,17,,17,17,17,17,,17,17,17,17,17,,17,17,17,17,,17 1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1 tuple,tuple,tuple,tuple,,tuple,tuple,tuple,tuple,,tuple,tuple,tuple,tuple,tuple,,tuple,tuple,tuple,tuple,,tuple,tuple,tuple,tuple,tuple,,tuple,tuple,tuple,tuple,,tuple,tuple,tuple,tuple,tuple,,tuple,tuple,tuple,tuple,,tuple 46,46,46,46,,46,46,46,46,,46,46,46,46,46,,46,46,46,46,,46,46,46,46,46,,46,46,46,46,,46,46,46,46,46,,46,46,46,46,,46 42,42,42,42,,42,42,42,42,,42,42,42,42,42,,42,42,42,42,,42,42,42,42,42,,42,42,42,42,,42,42,42,42,42,,42,42,42,42,,42 129,129,129,129,,129,129,129,129,,129,129,129,129,129,,129,129,129,129,,129,129,129,129,129,,129,129,129,129,,129,129,129,129,129,,129,129,129,129,,129 NM_001289119,NM_001289119,NM_001289119,NM_001289119,NM_001289119,NM_001289119,NM_001289119,NM_001289119,NM_001289119,NM_001289119,NM_001289119,NM_001289120,NM_001289120,NM_001289120,NM_001289120,NM_001289120,NM_001289120,NM_001289120,NM_001289120,NM_001289120,NM_001289120,NM_001289120,NM_001289121,NM_001289121,NM_001289121,NM_001289121,NM_001289121,NM_001289121,NM_001289121,NM_001289121,NM_001289121,NM_001289121,NM_001289121,NM_032226,NM_032226,NM_032226,NM_032226,NM_032226,NM_032226,NM_032226,NM_032226,NM_032226,NM_032226,NM_032226 205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205,205 3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3 tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614,614 1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632 43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43 130,130,130,130,,130,130,130,130,,130,130,130,130,130,,130,130,130,130,,130,130,130,130,130,,130,130,130,130,,130,130,130,130,130,,130,130,130,130,,130 KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW,KKKKKKKKGTKKWKLFPVHSIKS*KIKMDLEKNYPTPRTSRTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW PAX5:NM_001280547[1,1]-ZCCHC7:NM_001289119[3,9];PAX5:NM_001280548[1,1]-ZCCHC7:NM_001289119[3,9];PAX5:NM_001280549[1,1]-ZCCHC7:NM_001289119[3,9];PAX5:NM_001280550[1,1]-ZCCHC7:NM_001289119[3,9];PAX5:NM_001280551[1,1]-ZCCHC7:NM_001289119[3,9];PAX5:NM_001280552[1,1]-ZCCHC7:NM_001289119[3,9];PAX5:NM_001280553[1,1]-ZCCHC7:NM_001289119[3,9];PAX5:NM_001280554[1,1]-ZCCHC7:NM_001289119[3,9];PAX5:NM_001280555[1,1]-ZCCHC7:NM_001289119[3,9];PAX5:NM_001280556[1,1]-ZCCHC7:NM_001289119[3,9];PAX5:NM_016734[1,1]-ZCCHC7:NM_001289119[3,9];PAX5:NM_001280547[1,1]-ZCCHC7:NM_001289120[3,9];PAX5:NM_001280548[1,1]-ZCCHC7:NM_001289120[3,9];PAX5:NM_001280549[1,1]-ZCCHC7:NM_001289120[3,9];PAX5:NM_001280550[1,1]-ZCCHC7:NM_001289120[3,9];PAX5:NM_001280551[1,1]-ZCCHC7:NM_001289120[3,9];PAX5:NM_001280552[1,1]-ZCCHC7:NM_001289120[3,9];PAX5:NM_001280553[1,1]-ZCCHC7:NM_001289120[3,9];PAX5:NM_001280554[1,1]-ZCCHC7:NM_001289120[3,9];PAX5:NM_001280555[1,1]-ZCCHC7:NM_001289120[3,9];PAX5:NM_001280556[1,1]-ZCCHC7:NM_001289120[3,9];PAX5:NM_016734[1,1]-ZCCHC7:NM_001289120[3,9];PAX5:NM_001280547[1,1]-ZCCHC7:NM_001289121[3,9];PAX5:NM_001280548[1,1]-ZCCHC7:NM_001289121[3,9];PAX5:NM_001280549[1,1]-ZCCHC7:NM_001289121[3,9];PAX5:NM_001280550[1,1]-ZCCHC7:NM_001289121[3,9];PAX5:NM_001280551[1,1]-ZCCHC7:NM_001289121[3,9];PAX5:NM_001280552[1,1]-ZCCHC7:NM_001289121[3,9];PAX5:NM_001280553[1,1]-ZCCHC7:NM_001289121[3,9];PAX5:NM_001280554[1,1]-ZCCHC7:NM_001289121[3,9];PAX5:NM_001280555[1,1]-ZCCHC7:NM_001289121[3,9];PAX5:NM_001280556[1,1]-ZCCHC7:NM_001289121[3,9];PAX5:NM_016734[1,1]-ZCCHC7:NM_001289121[3,9];PAX5:NM_001280547[1,1]-ZCCHC7:NM_032226[3,9];PAX5:NM_001280548[1,1]-ZCCHC7:NM_032226[3,9];PAX5:NM_001280549[1,1]-ZCCHC7:NM_032226[3,9];PAX5:NM_001280550[1,1]-ZCCHC7:NM_032226[3,9];PAX5:NM_001280551[1,1]-ZCCHC7:NM_032226[3,9];PAX5:NM_001280552[1,1]-ZCCHC7:NM_032226[3,9];PAX5:NM_001280553[1,1]-ZCCHC7:NM_032226[3,9];PAX5:NM_001280554[1,1]-ZCCHC7:NM_032226[3,9];PAX5:NM_001280555[1,1]-ZCCHC7:NM_032226[3,9];PAX5:NM_001280556[1,1]-ZCCHC7:NM_032226[3,9];PAX5:NM_016734[1,1]-ZCCHC7:NM_032226[3,9] geneB_transcripts=NM_001289119,NM_001289120,NM_001289121,NM_032226 ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1 SJBALL020589_D1 ATF7IP chr12 14634119 + coding JAK2 chr9 5080229 + coding > 30 49 286 210 0.000 0.000 1184 1475 0.176 0.025 287 287 GTGTCACGACCATTGCAACCCATACAACCAGCACCGCCTCTTCAACCATCTGGGGTGCCAACAAGTGGACCATCTCAGACCACCATACACTTACTACCTACAGCTCCAACTACCGTGAATGTAACACATCGTCCAGTAACTCAGGTGACCACAAGACTCCCTGTACCAAGAGCTCCTGCAAACCACCAGGTGGTTTATACAACTCTTCCTGCACCACCAGCTCAGGCTCCCTTGCGAGGAACTGTTATGCAGGCTCCTGCTGTTCGGCAGGTCAATCCCCAAAATATTCTTCAGGAGAGAATACCATGGGTACCACCTGAATGCATTGAAAATCCTAAAAATTTAAATTTGGCAACAGACAAATGGAGTTTTGGTACCACTTTGTGGGAAATCTGCAGTGGAGGAGATAAACCTCTAAGTGCTCTGGATTCTCAAAGAAAGCTACAATTTTATGAAGATAGGCATCAGCTTCCTGCACCAAATTTGTTTACTCCAGAA CTX 2767.24 HQ 4 Fusion 1,1,1,1 NM_001286514,NM_001286515,NM_018179,NM_181352 1093,1093,1094,1102 13,13,13,13 perfect,perfect,perfect,perfect 3277,3277,3280,3304 94,94,94,94 284,284,284,284 NM_004972,NM_004972,NM_004972,NM_004972 711,711,711,711 17,17,17,17 tuple,tuple,tuple,tuple 2132,2132,2132,2132 3399,3399,3399,3399 95,95,95,95 285,285,285,285 VSRPLQPIQPAPPLQPSGVPTSGPSQTTIHLLPTAPTTVNVTHRPVTQVTTRLPVPRAPANHQVVYTTLPAPPAQAPLRGTVMQAPAVRQVNPQNILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDSQRKLQFYEDRHQLPAPNLFTPE,VSRPLQPIQPAPPLQPSGVPTSGPSQTTIHLLPTAPTTVNVTHRPVTQVTTRLPVPRAPANHQVVYTTLPAPPAQAPLRGTVMQAPAVRQVNPQNILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDSQRKLQFYEDRHQLPAPNLFTPE,VSRPLQPIQPAPPLQPSGVPTSGPSQTTIHLLPTAPTTVNVTHRPVTQVTTRLPVPRAPANHQVVYTTLPAPPAQAPLRGTVMQAPAVRQVNPQNILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDSQRKLQFYEDRHQLPAPNLFTPE,VSRPLQPIQPAPPLQPSGVPTSGPSQTTIHLLPTAPTTVNVTHRPVTQVTTRLPVPRAPANHQVVYTTLPAPPAQAPLRGTVMQAPAVRQVNPQNILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDSQRKLQFYEDRHQLPAPNLFTPE ATF7IP:NM_001286514[1,13]-JAK2:NM_004972[17,25];ATF7IP:NM_001286515[1,13]-JAK2:NM_004972[17,25];ATF7IP:NM_018179[1,13]-JAK2:NM_004972[17,25];ATF7IP:NM_181352[1,13]-JAK2:NM_004972[17,25] geneB_transcripts=NM_004972 ,,, 0,0,0,0 SJBALL020589_D1 JAK2 chr9 5077580 + coding ATF7IP chr12 14644992 + intron > 9 8 128 199 0.000 0.000 1295 191 0.099 0.055 160 161 AAATTATGGAGTATGTGTCTGTGGAGACGAGAATATTCTGGTTCAGGAGTTTGTAAAATTTGGATCACTAGATACATATCTGAAAAAGAATAAAAATTGTATAAATATATTATGGAAACTTGAAGTTGCTAAACAGTTGGCATGGGCCATGCATTTTCTATAGCCCTCACCTTACCAGTCAAGGAGCCAATGTGGTGGTTCTGCCAGCTGCTAAGTATGTCGATGCCAATTATGCATTTTGGCACTGCGGAAATGACCACAGGATGAATCCAGGAATCCACTGGATCCACTGTGTTACAGTTCGAGTGCCTCAAACAACCACATATGTTGTAAACAATGGACTAACCCTGGGATCAACAGTGGCACA CTX 857.91 HQ 4 CLoss 0,0,0,3,3,3 NM_004972,NM_004972,NM_004972,,, ,,,,, 15,15,15,,, ,,,,, 1992,1992,1992,,, ,,,,, ,,,,, NM_001286514,NM_018179,NM_181352,NM_001286514,NM_018179,NM_181352 1093,1094,1102,1093,1094,1102 14,14,14,,, blat,blat,blat,blat,blat,blat 3278,3281,3305,3278,3281,3305 3810,3813,3837,3810,3813,3837 97,97,97,,, ,,,,, IMEYVSVETRIFWFRSL*NLDH*IHI*KRIKIV*IYYGNLKLLNSWHGPCIFYSPHLTSQGANVVVLPAAKYVDANYAFWHCGNDHRMNPGIHWIHCVTVRVPQTTTYVVNNGLTLGSTVA,IMEYVSVETRIFWFRSL*NLDH*IHI*KRIKIV*IYYGNLKLLNSWHGPCIFYSPHLTSQGANVVVLPAAKYVDANYAFWHCGNDHRMNPGIHWIHCVTVRVPQTTTYVVNNGLTLGSTVA,IMEYVSVETRIFWFRSL*NLDH*IHI*KRIKIV*IYYGNLKLLNSWHGPCIFYSPHLTSQGANVVVLPAAKYVDANYAFWHCGNDHRMNPGIHWIHCVTVRVPQTTTYVVNNGLTLGSTVA,,, JAK2:NM_004972[1,15]-ATF7IP:NM_001286514[14,15];JAK2:NM_004972[1,15]-ATF7IP:NM_018179[14,15];JAK2:NM_004972[1,15]-ATF7IP:NM_181352[14,15];;; geneB_transcripts=NM_001286514,NM_018179,NM_181352 ,,,,, 2,2,2,,, SJBALL020589_D1 JAK2 chr9 5078418 + coding ATF7IP chr12 14644072 + intron > 21 14 233 176 0.000 0.000 750 466 0.274 0.000 234 250 GTTTCAGGAGTTTGTAAAATTTGGATCACTAGATACATATCTGAAAAAGAATAAAAATTGTATAAATATATTATGGAAACTTGAAGTTGCTAAACAGTTGGCATGGGCCATGCATTTTCTAGAAGAAAACACCCTTATTCATGGGAATGTATGTGCCAAAAATATTCTGCTTATCAGAGAAGAAGACAGGAAGACAGGAAATCCTCCTTTCATCAAACTTAGTGATCCTGGCATAGAAATTAGAACGGGGCCAAGTGGCAGAACAGCTTGCCCAGTAGCACGGACCTGCTGCAGAGCCTTCTCCTGTTCTGGACCACACTCAAAACTGGCAGCCTTTCAGGTCACTTGATAAATGGGCTGGAGTAACACACCCACATGAGGAATGTGTTGCCTCCAACATCCAAATAGGTCCACTAGACGTTGTGC CTX 750.00 HQ 4 CLoss ,, NM_004972,NM_004972,NM_004972 ,, ,, ,, 2105,2105,2105 ,, ,, NM_001286514,NM_018179,NM_181352 ,, ,, ,, 3278,3281,3305 3810,3813,3837 ,, ,, ,, ;; geneB_no_inframe_contig_found geneB_transcripts=NM_001286514,NM_018179,NM_181352 ,, ,, SJBALL020589_D1 PAX5 chr9 37033982 - coding NA chr14 57508194 + intergenic > 31 0 129 64 0.000 0.529 876 1 0.127 0.000 130 127 AAAAAAAAAAAAAAAAAAAAAAAAAGGCACAAAAAAGTGGAAACTTTTCCCTGTCCATTCCATCAAGTCCTGAAAAATCAAAATGGATTTAGAGAAAAATTATCCGACTCCTCGGACCAGCAGGACAGGAGAAGATGGTATAAACTGGTCCATCAGTGACAAAGACATTGAGGCCCAGATAGCTAATAACCGAACACC CTX 412.24 HQ 1 CLoss ,,,,,,,,,, NM_001280547,NM_001280548,NM_001280549,NM_001280550,NM_001280551,NM_001280552,NM_001280553,NM_001280554,NM_001280555,NM_001280556,NM_016734 ,,,,,,,,,, ,,,,,,,,,, ,,,,,,,,,, 46,46,46,46,,46,46,46,46,,46 ,,,,,,,,,, ,,,,,,,,,, ,,,,,,,,,, ,,,,,,,,,, ,,,,,,,,,, ,,,,,,,,,, ,,,,,,,,,, ,,,,,,,,,, ,,,,,,,,,, ,,,,,,,,,, ,,,,,,,,,, ;;;;;;;;;; geneB_no_transcripts ,,,,,,,,,, ,,,,,,,,,, SJBALL020589_D1 ERICH1-AS1 chr8 687825 + 5utr ERICH1 chr8 624049 - coding > 7 1 208 184 0.000 0.000 348 22 0.159 0.034 209 207 CCGGCCGTGAAGACCGACCGTGCGCCGGGCTCGAGCGCGGTCTGAGCGCGCGGCGCCTGCGGCGGCGAACGGACGGACGGACCGCGGACGGACGTACTGACCCCAACCCGCGAGCCCCGGGAGCCGTCGGTCTGAGGAGGGGCCGCTTCGCCATGTCGCCCCGCACCTGCTGAGCCCGGAGCGTCCGAGGATGTCCGCGCTGAGGAAGATCAGGATCCTCATGACCAGCCAAAGAGAAGAAGAATTAGGAAGCATAAATCAAAGAAAAAATTTAAAAATCCCAATAATGTTCTTATAGAACAAGCAGAATTAGAGAAACAGCAGAGTCTGTTACAGGAGAAATCTCAGCGACAGCACACAGATGGCACCACAATAAGCAAAAATAAAAAA ITX 353.16 HQ 0 NLoss 0 NM_207332 102 tuple 305 1332 geneA_no_transcript_IDs_found geneB_transcripts=NM_207332 SJBALL020589_D1 JAK2 chr9 5077582 + coding ATF7IP chr12 14649165 + coding > 7 2 78 149 0.000 0.000 321 20 0.099 0.025 79 77 AAAGAATAAAAATTGTATAAATATATTATGGAAACTTGAAGTTGCTAAACAGTTGGCATGGGCCATGCATTTTCTAGTGTTACAGTTCGAGTGCCTCAAACAACCACATATGTTGTAAACAATGGACTAACCCTGGGATCAACAGGACCTCAGCTCACAGTGCATCACCGACCACCACAAGTGCATACTGAGCCCCCACGCCCCGTGCACCCAGCACCCTTACCA CTX 196.40 HQ 4 Fusion 0,0,0,3,3,3 NM_004972,NM_004972,NM_004972,,, ,,,,, 15,15,15,,, ,,,,, 1992,1992,1992,,, ,,,,, ,,,,, NM_001286514,NM_018179,NM_181352,NM_001286514,NM_018179,NM_181352 1093,1094,1102,1093,1094,1102 14,14,14,,, tuple,tuple,tuple,tuple,tuple,tuple 3278,3281,3305,3278,3281,3305 3810,3813,3837,3810,3813,3837 25,25,25,,, ,,,,, KE*KLYKYIMET*SC*TVGMGHAFSSVTVRVPQTTTYVVNNGLTLGSTGPQLTVHHRPPQVHTEPPRPVHPAPLP,KE*KLYKYIMET*SC*TVGMGHAFSSVTVRVPQTTTYVVNNGLTLGSTGPQLTVHHRPPQVHTEPPRPVHPAPLP,KE*KLYKYIMET*SC*TVGMGHAFSSVTVRVPQTTTYVVNNGLTLGSTGPQLTVHHRPPQVHTEPPRPVHPAPLP,,, JAK2:NM_004972[1,15]-ATF7IP:NM_001286514[14,15];JAK2:NM_004972[1,15]-ATF7IP:NM_018179[14,15];JAK2:NM_004972[1,15]-ATF7IP:NM_181352[14,15];;; geneB_transcripts=NM_001286514,NM_018179,NM_181352 ,,,,, 0,0,0,,, SJBALL020589_D1 CD74 chr5 149785840 - coding CD74 chr5 149792314 - coding > 352 206 45 62 0.151 0.000 404 1316 0.000 0.173 60 60 GCCCTGCCCCAGGGGCCCATGCAGAATGCCACCAAGTATGGCAACATGACAGAGGACCAGAGATGCACAGGAGGAGAAGCAGGAGCTGTCGGGAAGATCAGAAGCCAGTCATGGATGACCAG Internal_dup 183.44 HQ 2 ITD 0,0,0,0,0,0,0,0,0,2,2,2 NM_001025158,NM_001025159,NM_004355,NM_001025158,NM_001025159,NM_004355,NM_001025158,NM_001025159,NM_004355,,, ,,,,,,,,,,, 4,4,4,4,4,4,4,4,4,,, ,,,,,,,,,,, 423,423,423,423,423,423,423,423,423,,, ,,,,,,,,,,, ,,,,,,,,,,, NM_001025158,NM_001025158,NM_001025158,NM_001025159,NM_001025159,NM_001025159,NM_004355,NM_004355,NM_004355,NM_001025158,NM_001025159,NM_004355 0,0,0,0,0,0,0,0,0,0,0,0 1,1,1,1,1,1,1,1,1,,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple ,,,,,,,,,,, 483,483,483,891,891,891,699,699,699,483,891,699 20,20,20,20,20,20,20,20,20,,, ,,,,,,,,,,, PAPGAHAECHQVWQHDRGPEMHRRRSRSCREDQKPVMDDQ,PAPGAHAECHQVWQHDRGPEMHRRRSRSCREDQKPVMDDQ,PAPGAHAECHQVWQHDRGPEMHRRRSRSCREDQKPVMDDQ,PAPGAHAECHQVWQHDRGPEMHRRRSRSCREDQKPVMDDQ,PAPGAHAECHQVWQHDRGPEMHRRRSRSCREDQKPVMDDQ,PAPGAHAECHQVWQHDRGPEMHRRRSRSCREDQKPVMDDQ,PAPGAHAECHQVWQHDRGPEMHRRRSRSCREDQKPVMDDQ,PAPGAHAECHQVWQHDRGPEMHRRRSRSCREDQKPVMDDQ,PAPGAHAECHQVWQHDRGPEMHRRRSRSCREDQKPVMDDQ,,, CD74:NM_001025158[1,4]-CD74:NM_001025158[1,6];CD74:NM_001025159[1,4]-CD74:NM_001025158[1,6];CD74:NM_004355[1,4]-CD74:NM_001025158[1,6];CD74:NM_001025158[1,4]-CD74:NM_001025159[1,9];CD74:NM_001025159[1,4]-CD74:NM_001025159[1,9];CD74:NM_004355[1,4]-CD74:NM_001025159[1,9];CD74:NM_001025158[1,4]-CD74:NM_004355[1,8];CD74:NM_001025159[1,4]-CD74:NM_004355[1,8];CD74:NM_004355[1,4]-CD74:NM_004355[1,8];;; geneB_transcripts=NM_001025158,NM_001025159,NM_004355;geneb_utr_codons=1 ,,,,,,,,,,, 2,2,2,2,2,2,2,2,2,,, SJBALL020589_D1 ATF7IP chr12 14634119 + coding JAK2 chr9 5081725 + coding > 1 2 67 80 0.000 0.000 81 126 0.176 0.010 67 68 GCTCAGGCTCCCTTGCGAGGAACTGTTATGCAGGCTCCTGCTGTTCGGCAGGTCAATCCCCAAAATAATTATGAACTATTAACAGAAAATGACATGTTACCAAATATGAGGATAGGTGCCCTGGGGTTTTCTGGTGCATTTGAAGACC CTX 163.88 HQ 4 Fusion 1,1,1,1 NM_001286514,NM_001286515,NM_018179,NM_181352 1093,1093,1094,1102 13,13,13,13 tuple,tuple,tuple,tuple 3277,3277,3280,3304 21,21,21,21 65,65,65,65 NM_004972,NM_004972,NM_004972,NM_004972 812,812,812,812 19,19,19,19 blat,blat,blat,blat 2435,2435,2435,2435 3399,3399,3399,3399 23,23,23,23 69,69,69,69 AQAPLRGTVMQAPAVRQVNPQNNYELLTENDMLPNMRIGALGFSGAFED,AQAPLRGTVMQAPAVRQVNPQNNYELLTENDMLPNMRIGALGFSGAFED,AQAPLRGTVMQAPAVRQVNPQNNYELLTENDMLPNMRIGALGFSGAFED,AQAPLRGTVMQAPAVRQVNPQNNYELLTENDMLPNMRIGALGFSGAFED ATF7IP:NM_001286514[1,13]-JAK2:NM_004972[19,25];ATF7IP:NM_001286515[1,13]-JAK2:NM_004972[19,25];ATF7IP:NM_018179[1,13]-JAK2:NM_004972[19,25];ATF7IP:NM_181352[1,13]-JAK2:NM_004972[19,25] geneB_transcripts=NM_004972 N,N,N,N 0,0,0,0 SJBALL020589_D1 FBXL13 chr7 102608469 - coding HLA-DPB1 chr6 33043815 + coding > 2 4 88 51 0.000 0.000 62 74 1.000 0.000 89 89 CTACCTCAGTTTAAAAGATGTGATAATATGTGGTCAAGTTAATCATGCCTGGATGTTGATGACACAACTAAACTCACTGTGGAATGCTCTCCATGATGGTTCTGCAGGTTTCTGCGGCCCCCCGGACAGTGGCTCTGAC CTX 124.00 HQ 0 upTSS 0,0,0,2 NM_001111038,NM_001287150,NM_145032, ,,, 7,7,7, ,,, 591,591,591, ,,, ,,, NM_002121,NM_002121,NM_002121,NM_002121 -1,-1,-1,-1 1,1,1, tuple,tuple,tuple,tuple ,,, 777,777,777,777 30,30,30, ,,, TSV*KM**YVVKLIMPGC**HN*THCGMLSMMVLQVSAAPRTVAL,TSV*KM**YVVKLIMPGC**HN*THCGMLSMMVLQVSAAPRTVAL,TSV*KM**YVVKLIMPGC**HN*THCGMLSMMVLQVSAAPRTVAL, FBXL13:NM_001111038[1,7]-HLA-DPB1:NM_002121[1,6];FBXL13:NM_001287150[1,7]-HLA-DPB1:NM_002121[1,6];FBXL13:NM_145032[1,7]-HLA-DPB1:NM_002121[1,6]; geneB_breakpoint_not_mapped_to_CDS=NM_001242524;geneB_breakpoint_not_mapped_to_CDS=NM_001242525 geneB_transcripts=NM_001242524,NM_001242525,NM_002121;geneB_transcript_strand_disagree=NM_001242524;geneB_intronic=NM_001242524;geneB_transcript_strand_disagree=NM_001242525;geneB_intronic=NM_001242525;geneb_utr_codons=2 ,,, 2,2,2, SJBALL020589_D1 NDUFB2 chr7 140404764 + 3utr KRIT1 chr7 91864921 - coding > 16 2 30 75 0.000 0.000 109 63 0.214 0.028 30 38 AGGTGTAGACTCAGCCTCACTCTGTACAAGAGCCAGGAAGCTTTATTCCGACCTTCTCCTCTTGAGCGGATAAAAACTAATGTCATAAATCCTGCATATGCTACTGAATCAGGA ITX 109.00 HQ 0 NLoss 0,0,0,0,0,0,0,0,0,0 NM_004546,NM_004546,NM_004546,NM_004546,NM_004546,,,,, ,,,,,,,,, 3,3,3,3,3,,,,, ,,,,,,,,, ,,,,,,,,, ,,,,,,,,, ,,,,,,,,, NM_001013406,NM_004912,NM_194454,NM_194455,NM_194456,NM_001013406,NM_004912,NM_194454,NM_194455,NM_194456 175,175,175,175,175,175,175,175,175,175 7,8,8,8,9,,,,, blat,blat,blat,blat,blat,blat,blat,blat,blat,blat 525,525,525,525,525,525,525,525,525,525 2067,2211,2211,2211,2211,2067,2211,2211,2211,2211 13,13,13,13,13,,,,, ,,,,,,,,, RCRLSLTLYKSQEALFRPSPLERIKTNVINPAYATESG,RCRLSLTLYKSQEALFRPSPLERIKTNVINPAYATESG,RCRLSLTLYKSQEALFRPSPLERIKTNVINPAYATESG,RCRLSLTLYKSQEALFRPSPLERIKTNVINPAYATESG,RCRLSLTLYKSQEALFRPSPLERIKTNVINPAYATESG,,,,, NDUFB2:NM_004546[1,3]-KRIT1:NM_001013406[7,17];NDUFB2:NM_004546[1,3]-KRIT1:NM_004912[8,19];NDUFB2:NM_004546[1,3]-KRIT1:NM_194454[8,19];NDUFB2:NM_004546[1,3]-KRIT1:NM_194455[8,19];NDUFB2:NM_004546[1,3]-KRIT1:NM_194456[9,20];;;;; geneB_transcripts=NM_001013406,NM_004912,NM_194454,NM_194455,NM_194456 ,,,,,,,,, 0,0,0,0,0,,,,, SJBALL020589_D1 ZCCHC7 chr9 37126940 + coding PAX5 chr9 37020808 - intron > 5 2 155 71 0.492 0.101 156 48 0.051 0.000 156 142 ATGATTATAGAGGTCAGTTCAAGTGAAGAGGAAGAGAGCACCATTTCAGAAGGTGATAATGTGGAAAGCTGGATGCTACTGGGATGTGAAGTAGATGATAAAGATGATGATATCCTTCTCAACCTTGTGGGATGTGAAAACTCTGTTACTGAAGGACATGGAGGAGTGAATCAGCTTGGGGGGGTTTTTGTGAATGGACGGCCACTCCCGGATGTAGTCCGCCA ITX 105.39 HQ 4 Fusion 1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1 NM_001289119,NM_001289120,NM_001289121,NM_032226,NM_001289119,NM_001289120,NM_001289121,NM_032226,NM_001289119,NM_001289120,NM_001289121,NM_032226,NM_001289119,NM_001289120,NM_001289121,NM_032226,NM_001289119,NM_001289120,NM_001289121,NM_032226,NM_001289119,NM_001289120,NM_001289121,NM_032226,NM_001289119,NM_001289120,NM_001289121,NM_032226,NM_001289119,NM_001289120,NM_001289121,NM_032226,NM_001289119,NM_001289120,NM_001289121,NM_032226 204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204 2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2 perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect 610,610,610,610,610,610,610,610,610,610,610,610,610,610,610,610,610,610,610,610,610,610,610,610,610,610,610,610,610,610,610,610,610,610,610,610 50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50 152,152,152,152,152,152,152,152,152,152,152,152,152,152,152,152,152,152,152,152,152,152,152,152,152,152,152,152,152,152,152,152,152,152,152,152 NM_001280547,NM_001280547,NM_001280547,NM_001280547,NM_001280548,NM_001280548,NM_001280548,NM_001280548,NM_001280549,NM_001280549,NM_001280549,NM_001280549,NM_001280550,NM_001280550,NM_001280550,NM_001280550,NM_001280552,NM_001280552,NM_001280552,NM_001280552,NM_001280553,NM_001280553,NM_001280553,NM_001280553,NM_001280554,NM_001280554,NM_001280554,NM_001280554,NM_001280555,NM_001280555,NM_001280555,NM_001280555,NM_016734,NM_016734,NM_016734,NM_016734 16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16 2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2 tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47 1074,1074,1074,1074,1089,1089,1089,1089,975,975,975,975,888,888,888,888,987,987,987,987,960,960,960,960,1047,1047,1047,1047,876,876,876,876,1176,1176,1176,1176 51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51 153,153,153,153,153,153,153,153,153,153,153,153,153,153,153,153,153,153,153,153,153,153,153,153,153,153,153,153,153,153,153,153,153,153,153,153 MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR,MIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGHGGVNQLGGVFVNGRPLPDVVR ZCCHC7:NM_001289119[1,2]-PAX5:NM_001280547[2,9];ZCCHC7:NM_001289120[1,2]-PAX5:NM_001280547[2,9];ZCCHC7:NM_001289121[1,2]-PAX5:NM_001280547[2,9];ZCCHC7:NM_032226[1,2]-PAX5:NM_001280547[2,9];ZCCHC7:NM_001289119[1,2]-PAX5:NM_001280548[2,9];ZCCHC7:NM_001289120[1,2]-PAX5:NM_001280548[2,9];ZCCHC7:NM_001289121[1,2]-PAX5:NM_001280548[2,9];ZCCHC7:NM_032226[1,2]-PAX5:NM_001280548[2,9];ZCCHC7:NM_001289119[1,2]-PAX5:NM_001280549[2,8];ZCCHC7:NM_001289120[1,2]-PAX5:NM_001280549[2,8];ZCCHC7:NM_001289121[1,2]-PAX5:NM_001280549[2,8];ZCCHC7:NM_032226[1,2]-PAX5:NM_001280549[2,8];ZCCHC7:NM_001289119[1,2]-PAX5:NM_001280550[2,7];ZCCHC7:NM_001289120[1,2]-PAX5:NM_001280550[2,7];ZCCHC7:NM_001289121[1,2]-PAX5:NM_001280550[2,7];ZCCHC7:NM_032226[1,2]-PAX5:NM_001280550[2,7];ZCCHC7:NM_001289119[1,2]-PAX5:NM_001280552[2,8];ZCCHC7:NM_001289120[1,2]-PAX5:NM_001280552[2,8];ZCCHC7:NM_001289121[1,2]-PAX5:NM_001280552[2,8];ZCCHC7:NM_032226[1,2]-PAX5:NM_001280552[2,8];ZCCHC7:NM_001289119[1,2]-PAX5:NM_001280553[2,8];ZCCHC7:NM_001289120[1,2]-PAX5:NM_001280553[2,8];ZCCHC7:NM_001289121[1,2]-PAX5:NM_001280553[2,8];ZCCHC7:NM_032226[1,2]-PAX5:NM_001280553[2,8];ZCCHC7:NM_001289119[1,2]-PAX5:NM_001280554[2,9];ZCCHC7:NM_001289120[1,2]-PAX5:NM_001280554[2,9];ZCCHC7:NM_001289121[1,2]-PAX5:NM_001280554[2,9];ZCCHC7:NM_032226[1,2]-PAX5:NM_001280554[2,9];ZCCHC7:NM_001289119[1,2]-PAX5:NM_001280555[2,8];ZCCHC7:NM_001289120[1,2]-PAX5:NM_001280555[2,8];ZCCHC7:NM_001289121[1,2]-PAX5:NM_001280555[2,8];ZCCHC7:NM_032226[1,2]-PAX5:NM_001280555[2,8];ZCCHC7:NM_001289119[1,2]-PAX5:NM_016734[2,10];ZCCHC7:NM_001289120[1,2]-PAX5:NM_016734[2,10];ZCCHC7:NM_001289121[1,2]-PAX5:NM_016734[2,10];ZCCHC7:NM_032226[1,2]-PAX5:NM_016734[2,10] geneB_no_inframe_contig_found geneB_transcripts=NM_001280547,NM_001280548,NM_001280549,NM_001280550,NM_001280551,NM_001280552,NM_001280553,NM_001280554,NM_001280555,NM_001280556,NM_016734;geneb_utr_codons=13 ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 SJBALL020589_D1 AKAP13 chr15 85924029 + 5utr B2M chr15 45007620 + coding > 2 7 190 85 0.016 0.000 95 26 0.158 0.005 191 191 CAGGGCCAGCGCGGAGCCCGAGCAGCCGCGGTGAAGCGCCTGTGCTCTGCCGAGACTGCCGTGCCCATTGCTCGCCTCGGTCGCCGCCGCTTTAGCCGCCTCCGGGGGAGCGGCCGCCTATTGTCTTTCTCCGCGGCGAAGGTGAAGAGTTGTCCCAGCTCGGCCCGCGGGGGAGCCCCGGGAGCCGCACGGTACTCCAAAGATTCAGGTTTACTCACGTCATCCAGCAGAGAATGGAAAGTCAAATTTCCTGAATTGCTATGTGTCTGGGTTTC INS 95.00 HQ 1 NLoss 0,0,0 NM_006738,NM_007200, ,, 1,1, ,, ,, ,, ,, NM_004048,NM_004048,NM_004048 23,23,23 2,2, blat,blat,blat 68,68,68 360,360,360 64,64, ,, RASAEPEQPR*SACALPRLPCPLLASVAAALAASGGAAAYCLSPRRR*RVVPARPAGEPREPHGTPKIQVYSRHPAENGKSNFLNCYVSGF,RASAEPEQPR*SACALPRLPCPLLASVAAALAASGGAAAYCLSPRRR*RVVPARPAGEPREPHGTPKIQVYSRHPAENGKSNFLNCYVSGF, AKAP13:NM_006738[1,1]-B2M:NM_004048[2,4];AKAP13:NM_007200[1,1]-B2M:NM_004048[2,4]; geneB_transcripts=NM_004048 ,, 1,1, SJBALL020589_D1 PAX5 chr9 37035717 - intergenic ZCCHC7 chr9 37302188 + coding > 0 4 65 60 0.000 0.528 1 208 0.000 0.051 65 67 CTGGGGCTGGGCTGCGGAGGGAAAGAGTCGAGCACTCGGAGATGGCCAAAAATCAAATCTCGGGGAGAAGATGGTATAAACTGGTCCATCAGTGACAAAGACATTGAGGCCCAGATAGCTAATAACC ITX 78.67 HQ 4 NLoss 0,0,0,0 ,,, ,,, ,,, ,,, ,,, ,,, ,,, NM_001289119,NM_001289120,NM_001289121,NM_032226 205,205,205,205 ,,, tuple,tuple,tuple,tuple 614,614,614,614 1632,1632,1632,1632 ,,, ,,, ,,, ;;; geneA_no_transcript_IDs_found geneB_transcripts=NM_001289119,NM_001289120,NM_001289121,NM_032226 ,,, ,,, SJBALL020589_D1 STK24 chr13 99171500 - coding MIR17HG,MIR17,MIR18A,MIR19A,MIR20A,MIR19B1,MIR92A1 chr13 92001950 + 5utr > 3 2 167 86 0.012 0.000 18 66 0.007 0.250 167 167 TGGAGAGGTGTTCAAAGGCATTGACAATCGGACTCAGAAAGTGGTTGCCATAAAGATCATTGATCTGGAAGAAGCTGAAGATGAGATAGAGGACATTCAACAAGAAATCACAGTGCTGAGTCAGTGTGACAGTCCATATGTAACCAAATATTATGGATCCTATCTGAAGTCATACACGTGGACCTAACTGCACCAGTAGCTTTTCTGAGAATACTTGCTGAAAAGGAAGTTTTCTGGAATGGGTAAGTGTATT ITX 65.23 HQ 0 CLoss ,, NM_001032296,NM_001286649,NM_003576 ,, ,, ,, 270,270,306 ,, ,, ,, ,, ,, ,, ,, ,, ,, ,, ,, ;; geneB_no_transcripts ,, ,, SJBALL020589_D1 ZNF286B,FOXO3B chr17 18565221 - 3utr ARHGAP24 chr4 86491675 + 5utr > 2 11 90 55 0.500 0.000 59 111 0.167 0.000 91 86 GCTTTAAGTGCAGTTCATCTCTCATCAGACATCAAAGAGTTCACACTGAAGAGCAACCCTGAAAAATTACTGAATGTGAAGAAATGAAAGTCCATCAGCTTGATAATGGAGGAGAACAATGACTCCACGGAGAACCCCCA CTX 59.00 HQ 0 other 0,3 NM_001145045, , 5, , , , , NM_001025616,NM_001025616 -6,-6 2, tuple,tuple , 2247,2247 31, , ALSAVHLSSDIKEFTLKSNPEKLLNVKK*KSISLIMEENNDSTENP, ZNF286B:NM_001145045[1,5]-ARHGAP24:NM_001025616[2,10]; geneB_transcripts=NM_001025616;geneb_utr_codons=7 , 0, SJBALL020589_D1 JAK2 chr9 5077581 + coding ATF7IP chr12 14644504 + intron > 3 4 75 138 0.000 0.738 224 102 0.099 0.026 75 74 AGAATAAAAATTGTATAAATATATTATGGAAACTTGAAGTTGCTAAACAGTTGGCATGGGCCATGCATTTTCTAGAGCAAAAAGTGATCAAGGTCTCTCTGAATAAGATTATGACACAAAGCTGGAGAGTTGATACACCCCTGAGTAGCCCTCACCTTACCAGTCAAGGAGCCAATGTGGTGGTTCTGCCAGCTGCTAAGTATGTCGATGCC CTX 50.85 HQ 4 CLoss ,, NM_004972,NM_004972,NM_004972 ,, ,, ,, 1992,1992,1992 ,, ,, NM_001286514,NM_018179,NM_181352 ,, ,, ,, 3278,3281,3305 3810,3813,3837 ,, ,, ,, ;; geneB_no_inframe_contig_found geneB_transcripts=NM_001286514,NM_018179,NM_181352 ,, ,, SJBALL020589_D1 CD74 chr5 149786809 - coding CD74 chr5 149792317 - coding > 6 440 42 48 0.000 0.000 134 1360 0.001 0.517 43 68 ATCCTGGTGACTCTGCTCCTCGCTGGCCAGGCCACCACCGCCACATACCGGGGCCCCAGGGCGCCGGCCCAGATGCACAGGAGGAGAAGCAGGAGCTGTCGGGAAGATCAGAAGC Internal_dup 49.82 HQ 2 ITD 1,1,1,1,1,1,1,1,1 NM_001025158,NM_001025159,NM_004355,NM_001025158,NM_001025159,NM_004355,NM_001025158,NM_001025159,NM_004355 69,69,69,69,69,69,69,69,69 2,2,2,2,2,2,2,2,2 tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 204,204,204,204,204,204,204,204,204 13,13,13,13,13,13,13,13,13 41,41,41,41,41,41,41,41,41 NM_001025158,NM_001025158,NM_001025158,NM_001025159,NM_001025159,NM_001025159,NM_004355,NM_004355,NM_004355 -1,-1,-1,-1,-1,-1,-1,-1,-1 1,1,1,1,1,1,1,1,1 tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple ,,,,,,,, 483,483,483,891,891,891,699,699,699 24,24,24,24,24,24,24,24,24 72,72,72,72,72,72,72,72,72 ILVTLLLAGQATTATYRGPRAPAQMHRRRSRSCREDQK,ILVTLLLAGQATTATYRGPRAPAQMHRRRSRSCREDQK,ILVTLLLAGQATTATYRGPRAPAQMHRRRSRSCREDQK,ILVTLLLAGQATTATYRGPRAPAQMHRRRSRSCREDQK,ILVTLLLAGQATTATYRGPRAPAQMHRRRSRSCREDQK,ILVTLLLAGQATTATYRGPRAPAQMHRRRSRSCREDQK,ILVTLLLAGQATTATYRGPRAPAQMHRRRSRSCREDQK,ILVTLLLAGQATTATYRGPRAPAQMHRRRSRSCREDQK,ILVTLLLAGQATTATYRGPRAPAQMHRRRSRSCREDQK CD74:NM_001025158[1,2]-CD74:NM_001025158[1,6];CD74:NM_001025159[1,2]-CD74:NM_001025158[1,6];CD74:NM_004355[1,2]-CD74:NM_001025158[1,6];CD74:NM_001025158[1,2]-CD74:NM_001025159[1,9];CD74:NM_001025159[1,2]-CD74:NM_001025159[1,9];CD74:NM_004355[1,2]-CD74:NM_001025159[1,9];CD74:NM_001025158[1,2]-CD74:NM_004355[1,8];CD74:NM_001025159[1,2]-CD74:NM_004355[1,8];CD74:NM_004355[1,2]-CD74:NM_004355[1,8] geneB_transcripts=NM_001025158,NM_001025159,NM_004355;geneb_utr_codons=2 TYRGPRAPAQ,TYRGPRAPAQ,TYRGPRAPAQ,TYRGPRAPAQ,TYRGPRAPAQ,TYRGPRAPAQ,TYRGPRAPAQ,TYRGPRAPAQ,TYRGPRAPAQ 0,0,0,0,0,0,0,0,0 SJBALL020589_D1 SLC35E1 chr19 16683619 + intergenic BRD4 chr19 15383946 - 5utr > 1 3 49 174 0.000 0.000 7 91 0.150 0.041 49 47 GCTAACTAGATTCCTGATTCCTGATGGCTGGCGGCGGCTGACACCAAAGAGTGCCTGGTGAAGAATGTGATGGGATCACTAGCATGTCTGCGGAGAGCGGCCCTGGGACGAGATTGAGAAATCTGCCAGTAATGGGGGATGGACTAGAAACTTCCCAAATGTCTACAACACAGGCCCAGGCCCAACCCCAGCCAGCCAACGCAGCCAGCACCAACCCCCCG ITX 46.43 HQ 2 upTSS 2,2 , , , , , , , NM_014299,NM_058243 -11,-11 , tuple,tuple , 2169,4089 , , , ; geneA_no_transcript_IDs_found geneB_transcripts=NM_014299,NM_058243;geneb_utr_codons=12 , , SJBALL020589_D1 CD74 chr5 149786833 + coding CD74 chr5 149792314 - coding ? 2 800 77 90 0.000 0.072 172 8110 0.000 0.173 122 127 TTCTGATCTTCCCGACAGCTCCTGCTTCTCCTCCCGTGCAGCTCGGGGAGGTGACTGTCAGTTTGTCCAGCCGGCCCTGCTGCTGGTACAGGAAGTAGGCGGTGGTGGCCTGGCCAGCGAGGTCCCAGATGCACAGGAGGAGAAGCAGGAGCTGTCGGGAAGATCAGAAGCCAGTCATGGATGACCAGCGCGACCTTATCTCCAACAATGAGCAACT Internal_inv 40.55 HQ 3 Fusion unhandled orientation ? SJBALL020589_D1 CD74 chr5 149786859 + coding CD74 chr5 149792314 - coding ? 2 499 69 85 0.000 0.034 159 6042 0.000 0.173 103 104 CTGGCTTCTGATCTTCCCGACAGCTCCTGCTTCTCTGCTGGTACAGGAAGTAGGCGGTGGTGGCCTGGCCAGCGAGGAGCAGAGTCACCAGGATGGAAAAGCCAGATGCACAGGAGGAGAAGCAGGAGCTGTCGGGAAGATCAGAAGCCAGTCATGGATGACCAGCGCGACCTTATCTCCAACAATGAG Internal_inv 30.21 HQ 3 Fusion unhandled orientation ? SJBALL020589_D1 CCND3 chr6 42016238 - 5utr IGH chr14 106322323 - 5utr > 1 6 189 68 0.000 0.029 29 170 0.011 0.028 189 188 AAACACTTCGCCACTGCAGGGGTGGAGACTGGCTCTGTTCGGATGCCGGCCGGGGGGGAGAGGTGCAATCCTCTCCTCGCGGCTGGTGGTTGCGACCACCCCCACTCCCCAAAGGCAGGCTCCGGAGGCGGCGGGACAGAGCGCCTGCGACCCCAGTCGGTGCTCCGGGGAGGTCACCTGACGAGGAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGC CTX 28.33 HQ 4 other ,, NM_001136017,NM_001136126,NM_001287434 ,, ,, ,, ,, ,, ,, ,, ,, ,, ,, ,, ,, ,, ,, ,, ;; geneB_no_transcripts ,, ,, SJBALL020589_D1 CD74 chr5 149786797 + coding CD74 chr5 149792310 - coding ? 10 389 62 98 0.127 0.000 348 4175 0.000 0.173 118 118 CCATGACTGGCTTCTGATCTTCCCGACAGCTCCTGCTTCTCCTCCTGTGCATCTGCAGGTTCTCCAGCTGCAGGTTCTGGGAGGTGACTGTCAGTTTGTCCAGCCGGCCCTGCTGCTGGCACAGGAGGAGAAGCAGGAGCTGTCGGGAAGATCAGAAGCCAGTCATGGATGACCAGCGCGACCTTATCTCCAACAATGAGCAACTGCCCATGCTGG Internal_inv 18.23 HQ 3 Fusion unhandled orientation ? SJBALL020589_D1 GLTSCR2 chr19 48249040 + coding DHX34 chr19 47885236 + coding > 36 3 48 94 0.534 0.000 28 67 0.003 0.105 49 49 GAGGTTGACCAGTTCCTGGAAGACGTGCGGCTACAGGAGCGCACGAGCGGGGGCTGAGGAAGCTGCCCTCGAAACCCTCCAGAAGACATCTGTCCTGCAGAGGCCCTACCACTGCGAGGCCTGCGGGAAGGACTTCCTCTTTA INS 11.49 HQ 0 Fusion 0,0 NM_015710, , 1, , 224, , , NM_014681,NM_014681 1100,1100 17, tuple,tuple 3299,3299 3432,3432 16, , RLTSSWKTCGYRSARAGAEEAALETLQKTSVLQRPYHCEACGKDFLF, GLTSCR2:NM_015710[1,1]-DHX34:NM_014681[17,17]; geneB_transcripts=NM_014681 , 1, SJBALL020589_D1 ATF7IP chr12 14634119 + coding JAK2 chr9 5080301 + coding > 0 3 66 80 0.000 0.000 0 131 0.176 0.011 66 66 CTCAGGCTCCCTTGCGAGGAACTGTTATGCAGGCTCCTGCTGTTCGGCAGGTCAATCCCCAAAATAACAAATGGAGTTTTGGTACCACTTTGTGGGAAATCTGCAGTGGAGGAGATAAACCTCTAAGTGCTCTGGATTCTCAAAGAA CTX 2.98 HQ 4 Fusion 1,1,1,1 NM_001286514,NM_001286515,NM_018179,NM_181352 1093,1093,1094,1102 13,13,13,13 tuple,tuple,tuple,tuple 3277,3277,3280,3304 20,20,20,20 64,64,64,64 NM_004972,NM_004972,NM_004972,NM_004972 735,735,735,735 17,17,17,17 blat,blat,blat,blat 2204,2204,2204,2204 3399,3399,3399,3399 22,22,22,22 68,68,68,68 QAPLRGTVMQAPAVRQVNPQNNKWSFGTTLWEICSGGDKPLSALDSQR,QAPLRGTVMQAPAVRQVNPQNNKWSFGTTLWEICSGGDKPLSALDSQR,QAPLRGTVMQAPAVRQVNPQNNKWSFGTTLWEICSGGDKPLSALDSQR,QAPLRGTVMQAPAVRQVNPQNNKWSFGTTLWEICSGGDKPLSALDSQR ATF7IP:NM_001286514[1,13]-JAK2:NM_004972[17,25];ATF7IP:NM_001286515[1,13]-JAK2:NM_004972[17,25];ATF7IP:NM_018179[1,13]-JAK2:NM_004972[17,25];ATF7IP:NM_181352[1,13]-JAK2:NM_004972[17,25] geneB_transcripts=NM_004972 N,N,N,N 2,2,2,2 SJBALL020589_D1 MNT chr17 2303934 - coding SEPT9 chr17 75478225 + coding > 1 2 138 58 0.000 0.000 47 52 0.077 0.033 139 139 CTGACCTGTGCCCGGCTCGCGGGCCGCCGCCTCGGCCCCGGCGCGCCCCCGGCAGCTCTCGGCGCGATGAGCATAGAGACGCTACTGGAGGCGGCCCGCTTCCTGGAATGGCAAGCGCAGCAACAACAGAGAGCACGTGCCACTGAGGCGGCTCCCAGCTGCGTTGGCGACATGGCCGACACCCCCAGAGATGCCG ITX 72.03 LQ 2 Fusion 1,1,1,1,1,1,1,1,1,1,1 NM_020310,NM_020310,NM_020310,NM_020310,NM_020310,NM_020310,NM_020310,NM_020310,NM_020310,NM_020310,NM_020310 25,25,25,25,25,25,25,25,25,25,25 1,1,1,1,1,1,1,1,1,1,1 tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 73,73,73,73,73,73,73,73,73,73,73 45,45,45,45,45,45,45,45,45,45,45 137,137,137,137,137,137,137,137,137,137,137 NM_001113491,NM_001113492,NM_001113493,NM_001113494,NM_001113495,NM_001113496,NM_001293695,NM_001293696,NM_001293697,NM_001293698,NM_006640 241,77,234,77,129,-10,222,17,-10,-10,223 4,4,3,3,2,2,3,2,2,2,3 tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 722,230,701,230,386,,665,50,,,668 1761,1269,1740,1269,1425,1008,1704,1089,1008,1008,1707 46,46,46,46,46,49,46,46,49,49,46 138,138,138,138,138,147,138,138,147,147,138 LTCARLAGRRLGPGAPPAALGAMSIETLLEAARFLEWQAQQQQRARATEAAPSCVGDMADTPRDA,LTCARLAGRRLGPGAPPAALGAMSIETLLEAARFLEWQAQQQQRARATEAAPSCVGDMADTPRDA,LTCARLAGRRLGPGAPPAALGAMSIETLLEAARFLEWQAQQQQRARATEAAPSCVGDMADTPRDA,LTCARLAGRRLGPGAPPAALGAMSIETLLEAARFLEWQAQQQQRARATEAAPSCVGDMADTPRDA,LTCARLAGRRLGPGAPPAALGAMSIETLLEAARFLEWQAQQQQRARATEAAPSCVGDMADTPRDA,LTCARLAGRRLGPGAPPAALGAMSIETLLEAARFLEWQAQQQQRARATEAAPSCVGDMADTPRDA,LTCARLAGRRLGPGAPPAALGAMSIETLLEAARFLEWQAQQQQRARATEAAPSCVGDMADTPRDA,LTCARLAGRRLGPGAPPAALGAMSIETLLEAARFLEWQAQQQQRARATEAAPSCVGDMADTPRDA,LTCARLAGRRLGPGAPPAALGAMSIETLLEAARFLEWQAQQQQRARATEAAPSCVGDMADTPRDA,LTCARLAGRRLGPGAPPAALGAMSIETLLEAARFLEWQAQQQQRARATEAAPSCVGDMADTPRDA,LTCARLAGRRLGPGAPPAALGAMSIETLLEAARFLEWQAQQQQRARATEAAPSCVGDMADTPRDA MNT:NM_020310[1,1]-SEPT9:NM_001113491[4,12];MNT:NM_020310[1,1]-SEPT9:NM_001113492[4,12];MNT:NM_020310[1,1]-SEPT9:NM_001113493[3,11];MNT:NM_020310[1,1]-SEPT9:NM_001113494[3,11];MNT:NM_020310[1,1]-SEPT9:NM_001113495[2,10];MNT:NM_020310[1,1]-SEPT9:NM_001113496[2,10];MNT:NM_020310[1,1]-SEPT9:NM_001293695[3,11];MNT:NM_020310[1,1]-SEPT9:NM_001293696[2,10];MNT:NM_020310[1,1]-SEPT9:NM_001293697[2,10];MNT:NM_020310[1,1]-SEPT9:NM_001293698[2,10];MNT:NM_020310[1,1]-SEPT9:NM_006640[3,11] geneB_transcripts=NM_001113491,NM_001113492,NM_001113493,NM_001113494,NM_001113495,NM_001113496,NM_001293695,NM_001293696,NM_001293697,NM_001293698,NM_006640;geneb_utr_codons=11 ,,,,,ATE,,,ATE,ATE, 0,0,0,0,0,0,0,0,0,0,0 SJBALL020589_D1 HIPK2 chr7 139415730 - coding TCF12 chr15 57212088 + 5utr > 2 0 138 136 0.000 0.000 55 0 0.080 0.019 139 137 CGCTGACCTCAAACCAGAAAACATCATGCTGGTGGATCCATCTAGACAACCATACAGAGTCAAGGTCATCGACTTTGGTTCAGCCAGCCACGTGTCCAAGGCTGTGTGCTCCACCTACTTGCAGTCCAGATATTACAGGACCTGCTAGAAGTGGCCGAAGATGAATCCCCAGCAACAACGCATGGCCGCTATAGGGACCGACAAGGAGCTGAGCGACCTACTGGACTTCAGTGCGATGTTTTCCCCACCTGTTAATAGTGGGAAAACTAGAC CTX 58.67 LQ 2 upTSS 0,0,0,0,0,0,0,0,2,2,2,2 NM_001113239,NM_022740,NM_001113239,NM_022740,NM_001113239,NM_022740,NM_001113239,NM_022740,,,, 369,369,369,369,369,369,369,369,,,, 2,2,2,2,2,2,2,2,,,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,,,, 1103,1103,1103,1103,1103,1103,1103,1103,,,, 45,45,45,45,45,45,45,45,,,, 138,138,138,138,138,138,138,138,,,, NM_003205,NM_003205,NM_207036,NM_207036,NM_207037,NM_207037,NM_207038,NM_207038,NM_003205,NM_207036,NM_207037,NM_207038 -7,-7,-3,-3,-7,-7,-3,-3,-7,-3,-7,-3 2,2,2,2,2,2,2,2,,,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple ,,,,,,,,,,, 2049,2049,2121,2121,2121,2121,2049,2049,2049,2121,2121,2049 48,48,52,52,48,48,52,52,,,, 145,145,157,157,145,145,157,157,,,, ADLKPENIMLVDPSRQPYRVKVIDFGSASHVSKAVCSTYLQSRYYRTC*KWPKMNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTR,ADLKPENIMLVDPSRQPYRVKVIDFGSASHVSKAVCSTYLQSRYYRTC*KWPKMNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTR,ADLKPENIMLVDPSRQPYRVKVIDFGSASHVSKAVCSTYLQSRYYRTC*KWPKMNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTR,ADLKPENIMLVDPSRQPYRVKVIDFGSASHVSKAVCSTYLQSRYYRTC*KWPKMNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTR,ADLKPENIMLVDPSRQPYRVKVIDFGSASHVSKAVCSTYLQSRYYRTC*KWPKMNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTR,ADLKPENIMLVDPSRQPYRVKVIDFGSASHVSKAVCSTYLQSRYYRTC*KWPKMNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTR,ADLKPENIMLVDPSRQPYRVKVIDFGSASHVSKAVCSTYLQSRYYRTC*KWPKMNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTR,ADLKPENIMLVDPSRQPYRVKVIDFGSASHVSKAVCSTYLQSRYYRTC*KWPKMNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTR,,,, HIPK2:NM_001113239[1,2]-TCF12:NM_003205[2,20];HIPK2:NM_022740[1,2]-TCF12:NM_003205[2,20];HIPK2:NM_001113239[1,2]-TCF12:NM_207036[2,21];HIPK2:NM_022740[1,2]-TCF12:NM_207036[2,21];HIPK2:NM_001113239[1,2]-TCF12:NM_207037[2,21];HIPK2:NM_022740[1,2]-TCF12:NM_207037[2,21];HIPK2:NM_001113239[1,2]-TCF12:NM_207038[2,20];HIPK2:NM_022740[1,2]-TCF12:NM_207038[2,20];;;; geneB_transcripts=NM_003205,NM_207036,NM_207037,NM_207038;geneb_utr_codons=8;not_inframe_due_to_intermediate_stop_codon;geneb_utr_codons=4 TC,TC,TC*KWP,TC*KWP,TC,TC,TC*KWP,TC*KWP,,,, 1,1,1,1,1,1,1,1,,,, SJBALL020589_D1 GUSBP4 chr6 58285306 - 3utr HLA-DPB1 chr6 33043816 + coding > 1 5 85 48 0.656 0.020 48 176 0.111 0.026 97 97 GTTCGGGGTTCGGTAAAAAAGCTCACACATTTGACTTGGAAGCAATGTTTGAACAAACTCAAAGAACAGCTGTGGAAAGAAGTCACAAAACACTGGCTCCATGATGGTTCTGCAGGTTTCTGCGGCCCCCCGGACAGTGGCTCT ITX 52.26 LQ 0 upTSS 2 NM_002121 0 tuple 777 geneB_breakpoint_not_mapped_to_CDS=NM_001242524;geneB_breakpoint_not_mapped_to_CDS=NM_001242525;geneA_no_transcript_IDs_found geneB_transcripts=NM_001242524,NM_001242525,NM_002121;geneB_transcript_strand_disagree=NM_001242524;geneB_intronic=NM_001242524;geneB_transcript_strand_disagree=NM_001242525;geneB_intronic=NM_001242525;geneb_utr_codons=1 SJBALL020589_D1 TRAK2 chr2 202260037 - coding RFPL1S chr22 29819177 - intergenic > 1 3 130 53 0.000 0.500 53 50 0.008 0.224 142 143 TAAAGAACTTCGTGAAACAAATGCTCAGATGTCCAGAATGACTGAAGAATTGTCAGGGAAGAGTGATGAGCTGATTCGATACCAAGAAGAGCTTTCCTCTCTTTTGTCACAGATTGTAGACCTTCAGCATAAACTTAAAGAAAAGCCTGGCTACAGATAAGGGACCAAAATGACTGACTCAAAATATTTCACCAC CTX 50.05 LQ 0 CLoss NM_015049 900 geneB_no_transcripts SJBALL020589_D1 LOC440311 chr15 95398934 + 5utr DHX34 chr19 47885236 + coding > 0 3 52 94 0.495 0.000 1 67 0.000 0.105 55 49 GAGGTTGACCAGTTCCTGGAAGACGTGCGGCTACAGGAGCGCACGAGCGGGGGCTGAGGAAGCTGCCCTCGAAACCCTCCAGAAGACATCTGTCCTGCAGAGGCCCTACCACTGCGAGGCCTGCGGGAAGGACTTCCTCTTTA CTX 33.83 LQ 0 NLoss 0 NM_014681 1100 tuple 3299 3432 geneA_no_transcript_IDs_found geneB_transcripts=NM_014681 SJBALL020589_D1 GPSM1 chr9 139235450 + coding SEPT9 chr17 75478221 + coding > 1 0 190 55 0.000 0.000 49 0 0.040 0.000 191 185 GTGTCCATGGGGCGCCCAGCGCAGGCCCTGACCTTCGCCAAGAAGCACCTGCAGATCTCCCAGGAGATCGGGGACCGCCATGGGGAGCTCACGGCCCGCATGAACGTGGCGCAGCTGCAGCTGGTGCTCGGCCGCCTGACCAGCCCGGCAGCCTCAGAGAAGCCTGACCTGGCCGGCTATGAGGCCCAGGCCACTGAGGCGGCTCCCAGCTGCGTTGGCGACATGGCCGACACCCCCAGA CTX 28.36 LQ 2 Fusion 1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1 NM_001145638,NM_015597,NM_001145638,NM_015597,NM_001145638,NM_015597,NM_001145638,NM_015597,NM_001145638,NM_015597,NM_001145638,NM_015597,NM_001145638,NM_015597,NM_001145638,NM_015597,NM_001145638,NM_015597,NM_001145638,NM_015597,NM_001145638,NM_015597 403,403,403,403,403,403,403,403,403,403,403,403,403,403,403,403,403,403,403,403,403,403 9,9,9,9,9,9,9,9,9,9,9,9,9,9,9,9,9,9,9,9,9,9 perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,tuple,tuple,perfect,perfect,perfect,perfect,tuple,tuple,tuple,tuple,perfect,perfect ,,,,,,,,,,,,,,,,,,,,, 62,62,62,62,62,62,62,62,62,62,62,62,62,62,62,62,62,62,62,62,62,62 188,188,188,188,188,188,188,188,188,188,188,188,188,188,188,188,188,188,188,188,188,188 NM_001113491,NM_001113491,NM_001113492,NM_001113492,NM_001113493,NM_001113493,NM_001113494,NM_001113494,NM_001113495,NM_001113495,NM_001113496,NM_001113496,NM_001293695,NM_001293695,NM_001293696,NM_001293696,NM_001293697,NM_001293697,NM_001293698,NM_001293698,NM_006640,NM_006640 241,241,77,77,234,234,77,77,129,129,-10,-10,222,222,17,17,-10,-10,-10,-10,223,223 4,4,4,4,3,3,3,3,2,2,2,2,3,3,2,2,2,2,2,2,3,3 tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 722,722,230,230,701,701,230,230,386,386,,,665,665,50,50,,,,,668,668 1761,1761,1269,1269,1740,1740,1269,1269,1425,1425,1008,1008,1704,1704,1089,1089,1008,1008,1008,1008,1707,1707 63,63,63,63,63,63,63,63,63,63,66,66,63,63,63,63,66,66,66,66,63,63 189,189,189,189,189,189,189,189,189,189,198,198,189,189,189,189,198,198,198,198,189,189 VSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQATEAAPSCVGDMADTPR,VSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQATEAAPSCVGDMADTPR,VSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQATEAAPSCVGDMADTPR,VSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQATEAAPSCVGDMADTPR,VSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQATEAAPSCVGDMADTPR,VSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQATEAAPSCVGDMADTPR,VSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQATEAAPSCVGDMADTPR,VSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQATEAAPSCVGDMADTPR,VSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQATEAAPSCVGDMADTPR,VSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQATEAAPSCVGDMADTPR,VSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQATEAAPSCVGDMADTPR,VSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQATEAAPSCVGDMADTPR,VSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQATEAAPSCVGDMADTPR,VSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQATEAAPSCVGDMADTPR,VSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQATEAAPSCVGDMADTPR,VSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQATEAAPSCVGDMADTPR,VSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQATEAAPSCVGDMADTPR,VSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQATEAAPSCVGDMADTPR,VSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQATEAAPSCVGDMADTPR,VSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQATEAAPSCVGDMADTPR,VSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQATEAAPSCVGDMADTPR,VSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTSPAASEKPDLAGYEAQATEAAPSCVGDMADTPR GPSM1:NM_001145638[1,9]-SEPT9:NM_001113491[4,12];GPSM1:NM_015597[1,9]-SEPT9:NM_001113491[4,12];GPSM1:NM_001145638[1,9]-SEPT9:NM_001113492[4,12];GPSM1:NM_015597[1,9]-SEPT9:NM_001113492[4,12];GPSM1:NM_001145638[1,9]-SEPT9:NM_001113493[3,11];GPSM1:NM_015597[1,9]-SEPT9:NM_001113493[3,11];GPSM1:NM_001145638[1,9]-SEPT9:NM_001113494[3,11];GPSM1:NM_015597[1,9]-SEPT9:NM_001113494[3,11];GPSM1:NM_001145638[1,9]-SEPT9:NM_001113495[2,10];GPSM1:NM_015597[1,9]-SEPT9:NM_001113495[2,10];GPSM1:NM_001145638[1,9]-SEPT9:NM_001113496[2,10];GPSM1:NM_015597[1,9]-SEPT9:NM_001113496[2,10];GPSM1:NM_001145638[1,9]-SEPT9:NM_001293695[3,11];GPSM1:NM_015597[1,9]-SEPT9:NM_001293695[3,11];GPSM1:NM_001145638[1,9]-SEPT9:NM_001293696[2,10];GPSM1:NM_015597[1,9]-SEPT9:NM_001293696[2,10];GPSM1:NM_001145638[1,9]-SEPT9:NM_001293697[2,10];GPSM1:NM_015597[1,9]-SEPT9:NM_001293697[2,10];GPSM1:NM_001145638[1,9]-SEPT9:NM_001293698[2,10];GPSM1:NM_015597[1,9]-SEPT9:NM_001293698[2,10];GPSM1:NM_001145638[1,9]-SEPT9:NM_006640[3,11];GPSM1:NM_015597[1,9]-SEPT9:NM_006640[3,11] geneB_transcripts=NM_001113491,NM_001113492,NM_001113493,NM_001113494,NM_001113495,NM_001113496,NM_001293695,NM_001293696,NM_001293697,NM_001293698,NM_006640;geneb_utr_codons=11 ,,,,,,,,,,ATE,ATE,,,,,ATE,ATE,ATE,ATE,, 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 SJBALL020589_D1 BMP2K chr4 79800045 + coding BMPR1B chr4 96025559 + coding > 0 1 54 160 0.000 0.000 1 53 0.000 0.036 54 54 CTAAGTTAACAGAAGAGGAACTATTGGACAGAGAATTTGACCTTCTAAGATCAACAAACTTCCTTGATAACATGCTTTTGCGAAGTGCAGGAAAATTAAATGTGGGCACCAAGAAAGAGGATGGTGAGAGTACAGCCCCCACCCCCCGTCCAAAGGTCTTGCGTTGTAAATGCCACCACCATTGTCCAGAAGACTCAGTCAACAATATTTGCAGC DEL 26.80 LQ 2 Fusion 1,1,1,1,1,1,1,1 NM_017593,NM_198892,NM_017593,NM_198892,NM_017593,NM_198892,NM_017593,NM_198892 651,651,651,651,651,651,651,651 14,14,14,14,14,14,14,14 tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 1951,1951,1951,1951,1951,1951,1951,1951 16,16,16,16,16,16,16,16 52,52,52,52,52,52,52,52 NM_001203,NM_001203,NM_001256792,NM_001256792,NM_001256793,NM_001256793,NM_001256794,NM_001256794 -5,-5,-5,-5,25,25,-5,-5 4,4,2,2,2,2,2,2 tuple,tuple,tuple,tuple,blat,blat,tuple,tuple ,,,,74,74,, 1509,1509,1509,1509,1599,1599,1509,1509 20,20,20,20,18,18,20,20 62,62,62,62,56,56,62,62 KLTEEELLDREFDLLRSTNFLDNMLLRSAGKLNVGTKKEDGESTAPTPRPKVLRCKCHHHCPEDSVNNICS,KLTEEELLDREFDLLRSTNFLDNMLLRSAGKLNVGTKKEDGESTAPTPRPKVLRCKCHHHCPEDSVNNICS,KLTEEELLDREFDLLRSTNFLDNMLLRSAGKLNVGTKKEDGESTAPTPRPKVLRCKCHHHCPEDSVNNICS,KLTEEELLDREFDLLRSTNFLDNMLLRSAGKLNVGTKKEDGESTAPTPRPKVLRCKCHHHCPEDSVNNICS,KLTEEELLDREFDLLRSTNFLDNMLLRSAGKLNVGTKKEDGESTAPTPRPKVLRCKCHHHCPEDSVNNICS,KLTEEELLDREFDLLRSTNFLDNMLLRSAGKLNVGTKKEDGESTAPTPRPKVLRCKCHHHCPEDSVNNICS,KLTEEELLDREFDLLRSTNFLDNMLLRSAGKLNVGTKKEDGESTAPTPRPKVLRCKCHHHCPEDSVNNICS,KLTEEELLDREFDLLRSTNFLDNMLLRSAGKLNVGTKKEDGESTAPTPRPKVLRCKCHHHCPEDSVNNICS BMP2K:NM_017593[1,14]-BMPR1B:NM_001203[4,13];BMP2K:NM_198892[1,14]-BMPR1B:NM_001203[4,13];BMP2K:NM_017593[1,14]-BMPR1B:NM_001256792[2,11];BMP2K:NM_198892[1,14]-BMPR1B:NM_001256792[2,11];BMP2K:NM_017593[1,14]-BMPR1B:NM_001256793[2,11];BMP2K:NM_198892[1,14]-BMPR1B:NM_001256793[2,11];BMP2K:NM_017593[1,14]-BMPR1B:NM_001256794[2,11];BMP2K:NM_198892[1,14]-BMPR1B:NM_001256794[2,11] geneB_transcripts=NM_001203,NM_001256792,NM_001256793,NM_001256794;geneb_utr_codons=6 TNF,TNF,TNF,TNF,T,T,TNF,TNF 2,2,2,2,2,2,2,2 SJBALL020589_D1 FUS chr16 31191548 + coding CXCR4 chr2 136873483 - coding > 4 4 57 60 0.000 0.000 28 153 0.004 0.025 57 56 GTTGGAACTTCGTTGCTTGCTTGCCTGTGCGCGCGTGCGCGGACATGGCCTCAAACGATATACACTTCAGATAACTACACCGAGGAAATGGGCTCAGGGGACTATGACTCCATGAA CTX 21.52 LQ 3 Fusion 0,0,0,0,0,0,0,0 NM_001170634,NM_001170937,NM_004960,NM_001170634,NM_001170937,NM_004960,, ,,,,,,, 1,1,1,1,1,1,, ,,,,,,, 13,13,13,13,13,13,, ,,,,,,, ,,,,,,, NM_001008540,NM_001008540,NM_001008540,NM_003467,NM_003467,NM_003467,NM_001008540,NM_003467 9,9,9,6,6,6,9,6 1,1,1,2,2,2,, blat,blat,blat,tuple,tuple,tuple,blat,tuple 27,27,27,16,16,16,27,16 1071,1071,1071,1059,1059,1059,1071,1059 19,19,19,19,19,19,, ,,,,,,, VGTSLLACLCARARTWPQTIYTSDNYTEEMGSGDYDSM,VGTSLLACLCARARTWPQTIYTSDNYTEEMGSGDYDSM,VGTSLLACLCARARTWPQTIYTSDNYTEEMGSGDYDSM,VGTSLLACLCARARTWPQTIYTSDNYTEEMGSGDYDSM,VGTSLLACLCARARTWPQTIYTSDNYTEEMGSGDYDSM,VGTSLLACLCARARTWPQTIYTSDNYTEEMGSGDYDSM,, FUS:NM_001170634[1,1]-CXCR4:NM_001008540[1,1];FUS:NM_001170937[1,1]-CXCR4:NM_001008540[1,1];FUS:NM_004960[1,1]-CXCR4:NM_001008540[1,1];FUS:NM_001170634[1,1]-CXCR4:NM_003467[2,2];FUS:NM_001170937[1,1]-CXCR4:NM_003467[2,2];FUS:NM_004960[1,1]-CXCR4:NM_003467[2,2];; geneB_transcripts=NM_001008540,NM_003467 ,,,,,,, 0,0,0,0,0,0,, SJBALL020589_D1 TTYH3 chr7 2671914 + coding SKI chr1 2234413 + coding > 4 0 81 47 0.000 0.000 74 0 0.077 0.000 82 77 TGCACCGGCTGCCCCACTTCGACCTGAGCTGGGAGGCCCCTAGCAGCCAGTTCCGGCCCGAGGACACCGACTACCAGCAGGTCTCCTCTGAGCCTCCGGCCTCCATAAGACCCAAAACAGATG CTX 17.19 LQ 2 Fusion 1 NM_025250 42 1 tuple 123 25 79 NM_003036 324 2 tuple 970 2187 26 80 HRLPHFDLSWEAPSSQFRPEDTDYQQVSSEPPASIRPKTD TTYH3:NM_025250[1,1]-SKI:NM_003036[2,7] geneB_transcripts=NM_003036 2 SJBALL020589_D1 FNBP1 chr9 132805231 - coding CXCR4 chr2 136873483 - coding > 0 7 54 82 0.000 0.000 0 120 0.030 0.025 54 54 CGCGGAGCGCCCCTTCGCGTCCCCTGCACCATGAGCTGGGGCACCGAGCTCTGGATATACACTTAAGATAACTACACCGAGGAAATGGGCTCAGGGGACTATGACTCCATGAAGGAACCCTGTTTCCGTGAAGAAA CTX 16.88 LQ 3 Fusion 0,0,3,3 NM_015033,NM_015033,, ,,, 1,1,, ,,, 24,24,, ,,, ,,, NM_001008540,NM_003467,NM_001008540,NM_003467 9,6,9,6 1,2,, blat,blat,blat,blat 27,16,27,16 1071,1059,1071,1059 21,21,, ,,, RGAPLRVPCTMSWGTELWIYT*DNYTEEMGSGDYDSMKEPCFREE,RGAPLRVPCTMSWGTELWIYT*DNYTEEMGSGDYDSMKEPCFREE,, FNBP1:NM_015033[1,1]-CXCR4:NM_001008540[1,1];FNBP1:NM_015033[1,1]-CXCR4:NM_003467[2,2];; geneB_transcripts=NM_001008540,NM_003467 ,,, 0,0,, SJBALL020589_D1 TFEB chr6 41703086 - 5utr CCND3 chr6 41908322 - coding > 2 3 95 61 0.000 0.076 91 40 0.027 0.012 96 96 GCGGGCACAGCTTGCGGGCCAGGCACCCGAACTTGCGACAAGTTGCCGGAGCCGCGGGGCGCGGGCGGCGGACAGATTGACCTTCAGAGCGAGGTATGTGAGGAGCAGCGCTGTGAGGAGGAAGTCTTCCCCCTGGCCATGAACTACCTGGATCGATA INS 13.72 LQ 3 NLoss 0,0,0,0,0,0,0,0,0,0,0,0 NM_001167827,NM_001271943,NM_001271944,NM_001167827,NM_001271943,NM_001271944,NM_001167827,NM_001271943,NM_001271944,,, ,,,,,,,,,,, 1,1,1,1,1,1,1,1,1,,, ,,,,,,,,,,, 20,,,20,,,20,,,,, ,,,,,,,,,,, ,,,,,,,,,,, NM_001136017,NM_001136017,NM_001136017,NM_001287427,NM_001287427,NM_001287427,NM_001760,NM_001760,NM_001760,NM_001136017,NM_001287427,NM_001760 -14,-14,-14,17,17,17,67,67,67,-14,17,67 2,2,2,2,2,2,2,2,2,,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple ,,,50,50,50,200,200,200,,50,200 636,636,636,729,729,729,879,879,879,636,729,879 34,34,34,31,31,31,31,31,31,,, ,,,,,,,,,,, AGTACGPGTRTCDKLPEPRGAGGGQIDLQSEVCEEQRCEEEVFPLAMNYLDR,AGTACGPGTRTCDKLPEPRGAGGGQIDLQSEVCEEQRCEEEVFPLAMNYLDR,AGTACGPGTRTCDKLPEPRGAGGGQIDLQSEVCEEQRCEEEVFPLAMNYLDR,AGTACGPGTRTCDKLPEPRGAGGGQIDLQSEVCEEQRCEEEVFPLAMNYLDR,AGTACGPGTRTCDKLPEPRGAGGGQIDLQSEVCEEQRCEEEVFPLAMNYLDR,AGTACGPGTRTCDKLPEPRGAGGGQIDLQSEVCEEQRCEEEVFPLAMNYLDR,AGTACGPGTRTCDKLPEPRGAGGGQIDLQSEVCEEQRCEEEVFPLAMNYLDR,AGTACGPGTRTCDKLPEPRGAGGGQIDLQSEVCEEQRCEEEVFPLAMNYLDR,AGTACGPGTRTCDKLPEPRGAGGGQIDLQSEVCEEQRCEEEVFPLAMNYLDR,,, TFEB:NM_001167827[1,1]-CCND3:NM_001136017[2,5];TFEB:NM_001271943[1,1]-CCND3:NM_001136017[2,5];TFEB:NM_001271944[1,1]-CCND3:NM_001136017[2,5];TFEB:NM_001167827[1,1]-CCND3:NM_001287427[2,5];TFEB:NM_001271943[1,1]-CCND3:NM_001287427[2,5];TFEB:NM_001271944[1,1]-CCND3:NM_001287427[2,5];TFEB:NM_001167827[1,1]-CCND3:NM_001760[2,5];TFEB:NM_001271943[1,1]-CCND3:NM_001760[2,5];TFEB:NM_001271944[1,1]-CCND3:NM_001760[2,5];;; geneB_breakpoint_not_mapped_to_CDS=NM_001136125;geneB_breakpoint_not_mapped_to_CDS=NM_001136126;geneB_breakpoint_not_mapped_to_CDS=NM_001287434 geneB_transcripts=NM_001136017,NM_001136125,NM_001136126,NM_001287427,NM_001287434,NM_001760;geneb_utr_codons=13;geneB_intronic=NM_001136125;geneB_intronic=NM_001136126;geneB_intronic=NM_001287434 ,,,,,,,,,,, 0,0,0,0,0,0,0,0,0,,, SJBALL020589_D1 CUX1 chr7 101882864 + coding GOLGA4 chr3 37396590 + coding > 0 2 52 94 0.480 0.000 1 66 0.000 0.045 52 50 CCCAGCTCAACCTGAAAACCAGCACCGTCATCAACTGGTTCCACAACTACAGACCATGGCAAAAGTTATAACCACCGTACTGAAGTTCCCTGATGATCAGACTCAGAAAATTTTGGAAAGAGAAGATGCTCGGCTGATGTTTAC CTX 11.42 LQ 3 Fusion 0,0,0,0,0,0,0,0,0,0,0,0,0,0,3,3 NM_001202543,NM_001202544,NM_001202545,NM_001202546,NM_001913,NM_181500,NM_181552,NM_001202543,NM_001202544,NM_001202545,NM_001202546,NM_001913,NM_181500,NM_181552,, ,,,,,,,,,,,,,,, 23,13,13,13,14,14,23,23,13,13,13,14,14,23,, ,,,,,,,,,,,,,,, 3920,,,,,,3887,3920,,,,,,3887,, ,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,, NM_001172713,NM_001172713,NM_001172713,NM_001172713,NM_001172713,NM_001172713,NM_001172713,NM_002078,NM_002078,NM_002078,NM_002078,NM_002078,NM_002078,NM_002078,NM_001172713,NM_002078 2208,2208,2208,2208,2208,2208,2208,2193,2193,2193,2193,2193,2193,2193,2208,2193 22,22,22,22,22,22,22,22,22,22,22,22,22,22,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 6622,6622,6622,6622,6622,6622,6622,6577,6577,6577,6577,6577,6577,6577,6622,6577 6732,6732,6732,6732,6732,6732,6732,6693,6693,6693,6693,6693,6693,6693,6732,6693 17,17,17,17,17,17,17,17,17,17,17,17,17,17,, ,,,,,,,,,,,,,,, PAQPENQHRHQLVPQLQTMAKVITTVLKFPDDQTQKILEREDARLMF,PAQPENQHRHQLVPQLQTMAKVITTVLKFPDDQTQKILEREDARLMF,PAQPENQHRHQLVPQLQTMAKVITTVLKFPDDQTQKILEREDARLMF,PAQPENQHRHQLVPQLQTMAKVITTVLKFPDDQTQKILEREDARLMF,PAQPENQHRHQLVPQLQTMAKVITTVLKFPDDQTQKILEREDARLMF,PAQPENQHRHQLVPQLQTMAKVITTVLKFPDDQTQKILEREDARLMF,PAQPENQHRHQLVPQLQTMAKVITTVLKFPDDQTQKILEREDARLMF,PAQPENQHRHQLVPQLQTMAKVITTVLKFPDDQTQKILEREDARLMF,PAQPENQHRHQLVPQLQTMAKVITTVLKFPDDQTQKILEREDARLMF,PAQPENQHRHQLVPQLQTMAKVITTVLKFPDDQTQKILEREDARLMF,PAQPENQHRHQLVPQLQTMAKVITTVLKFPDDQTQKILEREDARLMF,PAQPENQHRHQLVPQLQTMAKVITTVLKFPDDQTQKILEREDARLMF,PAQPENQHRHQLVPQLQTMAKVITTVLKFPDDQTQKILEREDARLMF,PAQPENQHRHQLVPQLQTMAKVITTVLKFPDDQTQKILEREDARLMF,, CUX1:NM_001202543[1,23]-GOLGA4:NM_001172713[22,23];CUX1:NM_001202544[1,13]-GOLGA4:NM_001172713[22,23];CUX1:NM_001202545[1,13]-GOLGA4:NM_001172713[22,23];CUX1:NM_001202546[1,13]-GOLGA4:NM_001172713[22,23];CUX1:NM_001913[1,14]-GOLGA4:NM_001172713[22,23];CUX1:NM_181500[1,14]-GOLGA4:NM_001172713[22,23];CUX1:NM_181552[1,23]-GOLGA4:NM_001172713[22,23];CUX1:NM_001202543[1,23]-GOLGA4:NM_002078[22,24];CUX1:NM_001202544[1,13]-GOLGA4:NM_002078[22,24];CUX1:NM_001202545[1,13]-GOLGA4:NM_002078[22,24];CUX1:NM_001202546[1,13]-GOLGA4:NM_002078[22,24];CUX1:NM_001913[1,14]-GOLGA4:NM_002078[22,24];CUX1:NM_181500[1,14]-GOLGA4:NM_002078[22,24];CUX1:NM_181552[1,23]-GOLGA4:NM_002078[22,24];; geneB_transcripts=NM_001172713,NM_002078 ,,,,,,,,,,,,,,, 1,1,1,1,1,1,1,1,1,1,1,1,1,1,, SJBALL020589_D1 ERICH1-AS1 chr8 687825 + 5utr HMGB1 chr13 31037833 - 5utr > 3 1 77 61 0.000 0.947 91 7 0.159 0.023 78 76 CTGAGGAGGGGCCGCTTCGCCATGTCGCCCCGCACCTGCTGAGCCCGGAGCGTCCGAGGATGTCCGCGCTGAGGAAGAAAAATAACTAAACATGGGCAAAGGAGATCCTAAGAAGCCGAGAGGCAAAATGTCATCA CTX 11.20 LQ 0 upTSS 2 NM_002128 -4 tuple 648 geneA_no_transcript_IDs_found geneB_transcripts=NM_002128;geneb_utr_codons=5 SJBALL020589_D1 AKAP8 chr19 15490523 - coding TCF12 chr15 57212088 + 5utr > 2 0 84 136 0.000 0.000 64 0 0.019 0.019 85 82 CGCTGAACGCATGCGTGCTGTGGTCGCCTAGTAAACGGGGCTGCTGGTGGGCCGCGTCGAAGACATGGACCAGGGCTACGGAGGACCTGCTAGAAGTGGCCGAAGATGAATCCCCAGCAACAACGCATGGCCGCTATAGGGACCGACAAGGAGCTGAGCGACCTACTGGACTTCAGTGCGATGTTTTCCCCACCTGTTAATAGTGGGAAAACTAGAC CTX 9.04 LQ 2 upTSS 0,0,0,0,2,2,2,2 NM_005858,NM_005858,NM_005858,NM_005858,,,, ,,,,,,, 1,1,1,1,,,, ,,,,,,, 19,19,19,19,,,, ,,,,,,, ,,,,,,, NM_003205,NM_207036,NM_207037,NM_207038,NM_003205,NM_207036,NM_207037,NM_207038 -7,-3,-7,-3,-7,-3,-7,-3 2,2,2,2,,,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple ,,,,,,, 2049,2121,2121,2049,2049,2121,2121,2049 30,34,30,34,,,, ,,,,,,, R*THACCGRLVNGAAGGPRRRHGPGLRRTC*KWPKMNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTR,R*THACCGRLVNGAAGGPRRRHGPGLRRTC*KWPKMNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTR,R*THACCGRLVNGAAGGPRRRHGPGLRRTC*KWPKMNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTR,R*THACCGRLVNGAAGGPRRRHGPGLRRTC*KWPKMNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTR,,,, AKAP8:NM_005858[1,1]-TCF12:NM_003205[2,20];AKAP8:NM_005858[1,1]-TCF12:NM_207036[2,21];AKAP8:NM_005858[1,1]-TCF12:NM_207037[2,21];AKAP8:NM_005858[1,1]-TCF12:NM_207038[2,20];;;; geneB_transcripts=NM_003205,NM_207036,NM_207037,NM_207038;geneb_utr_codons=8;geneb_utr_codons=4 ,,,,,,, 0,0,0,0,,,, SJBALL020589_D1 ECHDC3 chr10 11797608 + coding ARHGAP24 chr4 86491673 + 5utr > 2 3 90 46 0.000 0.000 54 70 0.125 0.000 91 88 ACAAGTCCTCTTTTGCCACTCCTGGGGTGAACGTCGGGCTCTTCTGTTCTACCCCTGGGGTTGCCTTGGCAAGAGCAGTGCCTAGAAAGGAAAGTCCATCAGCTTGATAATGGAGGAGAACAATGACTCCACG CTX 7.31 LQ 0 CLoss 0,0 NM_024693, , 4, , , , , NM_001025616,NM_001025616 -6,-6 2, tuple,tuple , 2247,2247 32, , QVLFCHSWGERRALLFYPWGCLGKSSA*KGKSISLIMEENNDST, ECHDC3:NM_024693[1,4]-ARHGAP24:NM_001025616[2,10]; geneB_transcripts=NM_001025616;geneb_utr_codons=7 , 1, SJBALL020589_D1 CASD1 chr7 94164835 + coding SND1 chr7 127731889 + coding > 1 0 95 49 0.000 0.000 50 1 0.022 0.000 96 96 ATGTTAAGATGTTCAGTGTTTCCAAATTAATTGCTCAAGAAACCATCATGGAATCTTTGGATGGCTTACATCTTCCTGAATCGAGCAGAGAAACTATCACAGAATACCTGAATACCCAAGAGTCAGCCAAGAGCGCCAGGCTGAA DEL 6.39 LQ 2 Fusion 1 NM_022900 282 8 perfect 843 30 94 NM_014390 875 23 blat 2623 2733 31 95 VKMFSVSKLIAQETIMESLDGLHLPESSRETITEYLNTQESAKSARL CASD1:NM_022900[1,8]-SND1:NM_014390[23,24] geneB_transcripts=NM_014390 2 SJBALL020589_D1 NIN chr14 51288594 - coding KLC1 chr14 104120900 + coding > 0 1 171 103 0.006 0.000 0 47 0.015 0.018 171 171 GGAGCAGGACCAGCATGAGGCCCGACTCAAGGAGCTGTTTGACAGTTTTGACACGACGGGCACAGGGTCCCTGGGGCAGGAGGAACTCACCGACCTTTGCCACATGTTGAGCTTGGAGGAGGTGGCCCCAGTGCTGCAGCAGACATTACTTCAGGACAACCTCTTGGGCAGGAATGTATGACAACATGTCCACAATGGTGTACATAAAGGAAGACAAGTTGGAGAAGCTTACACAGGATGAAATTATTTCTAAGACAAAGCAAGTAATTCAGGG ITX 5.50 LQ 3 upTSS 0,0,0,0,0,0,0,0,0,0,0,0,2,2,2 NM_016350,NM_020921,NM_182944,NM_182946,NM_016350,NM_020921,NM_182944,NM_182946,NM_016350,NM_020921,NM_182944,NM_182946,,, ,,,,,,,,,,,,,, 3,3,3,3,3,3,3,3,3,3,3,3,,, ,,,,,,,,,,,,,, 181,,,,181,,,,181,,,,,, ,,,,,,,,,,,,,, ,,,,,,,,,,,,,, NM_001130107,NM_001130107,NM_001130107,NM_001130107,NM_005552,NM_005552,NM_005552,NM_005552,NM_182923,NM_182923,NM_182923,NM_182923,NM_001130107,NM_005552,NM_182923 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 2,2,2,2,2,2,2,2,2,2,2,2,,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple ,,,,,,,,,,,,,, 1857,1857,1857,1857,1683,1683,1683,1683,1722,1722,1722,1722,1857,1683,1722 57,57,57,57,57,57,57,57,57,57,57,57,,, ,,,,,,,,,,,,,, SRTSMRPDSRSCLTVLTRRAQGPWGRRNSPTFATC*AWRRWPQCCSRHYFRTTSWAGMYDNMSTMVYIKEDKLEKLTQDEIISKTKQVIQ,SRTSMRPDSRSCLTVLTRRAQGPWGRRNSPTFATC*AWRRWPQCCSRHYFRTTSWAGMYDNMSTMVYIKEDKLEKLTQDEIISKTKQVIQ,SRTSMRPDSRSCLTVLTRRAQGPWGRRNSPTFATC*AWRRWPQCCSRHYFRTTSWAGMYDNMSTMVYIKEDKLEKLTQDEIISKTKQVIQ,SRTSMRPDSRSCLTVLTRRAQGPWGRRNSPTFATC*AWRRWPQCCSRHYFRTTSWAGMYDNMSTMVYIKEDKLEKLTQDEIISKTKQVIQ,SRTSMRPDSRSCLTVLTRRAQGPWGRRNSPTFATC*AWRRWPQCCSRHYFRTTSWAGMYDNMSTMVYIKEDKLEKLTQDEIISKTKQVIQ,SRTSMRPDSRSCLTVLTRRAQGPWGRRNSPTFATC*AWRRWPQCCSRHYFRTTSWAGMYDNMSTMVYIKEDKLEKLTQDEIISKTKQVIQ,SRTSMRPDSRSCLTVLTRRAQGPWGRRNSPTFATC*AWRRWPQCCSRHYFRTTSWAGMYDNMSTMVYIKEDKLEKLTQDEIISKTKQVIQ,SRTSMRPDSRSCLTVLTRRAQGPWGRRNSPTFATC*AWRRWPQCCSRHYFRTTSWAGMYDNMSTMVYIKEDKLEKLTQDEIISKTKQVIQ,SRTSMRPDSRSCLTVLTRRAQGPWGRRNSPTFATC*AWRRWPQCCSRHYFRTTSWAGMYDNMSTMVYIKEDKLEKLTQDEIISKTKQVIQ,SRTSMRPDSRSCLTVLTRRAQGPWGRRNSPTFATC*AWRRWPQCCSRHYFRTTSWAGMYDNMSTMVYIKEDKLEKLTQDEIISKTKQVIQ,SRTSMRPDSRSCLTVLTRRAQGPWGRRNSPTFATC*AWRRWPQCCSRHYFRTTSWAGMYDNMSTMVYIKEDKLEKLTQDEIISKTKQVIQ,SRTSMRPDSRSCLTVLTRRAQGPWGRRNSPTFATC*AWRRWPQCCSRHYFRTTSWAGMYDNMSTMVYIKEDKLEKLTQDEIISKTKQVIQ,,, NIN:NM_016350[1,3]-KLC1:NM_001130107[2,16];NIN:NM_020921[1,3]-KLC1:NM_001130107[2,16];NIN:NM_182944[1,3]-KLC1:NM_001130107[2,16];NIN:NM_182946[1,3]-KLC1:NM_001130107[2,16];NIN:NM_016350[1,3]-KLC1:NM_005552[2,15];NIN:NM_020921[1,3]-KLC1:NM_005552[2,15];NIN:NM_182944[1,3]-KLC1:NM_005552[2,15];NIN:NM_182946[1,3]-KLC1:NM_005552[2,15];NIN:NM_016350[1,3]-KLC1:NM_182923[2,15];NIN:NM_020921[1,3]-KLC1:NM_182923[2,15];NIN:NM_182944[1,3]-KLC1:NM_182923[2,15];NIN:NM_182946[1,3]-KLC1:NM_182923[2,15];;; geneB_transcripts=NM_001130107,NM_005552,NM_182923;geneb_utr_codons=1 ,,,,,,,,,,,,,, 2,2,2,2,2,2,2,2,2,2,2,2,,, SJBALL020589_D1 GNA12 chr7 2834562 - coding AFF3 chr2 100203737 - coding > 1 0 217 101 0.005 0.000 50 0 0.017 0.000 254 257 GGACCGCGCGCCGCTCGCGGGCCAGCAGCGCGTCACGGGCTCAAGGGTTCTTGTTGATGCACGAGATAAGCTTGGCATTCCTTGGCAGTATTCTGAAAATGAGAAGCATGGGATGTTCCTGATGGCCTTCGAGAACAAGGCGGGGCTGCCTGTGGAGCCGGCCACCTTCCAGCTGTACGTCCCGGCCCTGAGCGCACTCTGGAGGGATTCTGGCATCAGGGAGGCTTTCAGCCGGAGAAGCGAGTTTCAGCTGGGGGACAACGAAGACGACTACAGGGAGATCAAGAAGTCCCAGGGAGAGAAAGACAGCTCTTCAAGACTGGCCACCTCCACCAGTAATACTTTGTCTGCAAACCA CTX 5.37 LQ 2 Fusion 1,1,1,1,1,1 NM_001282441,NM_001293092,NM_007353,NM_001282441,NM_001293092,NM_007353 118,176,177,118,176,177 3,2,2,3,2,2 tuple,tuple,tuple,tuple,tuple,tuple 348,525,525,348,525,525 84,83,84,84,83,84 255,252,255,255,252,255 NM_001025108,NM_001025108,NM_001025108,NM_002285,NM_002285,NM_002285 849,849,849,824,824,824 15,15,15,15,15,15 tuple,tuple,tuple,tuple,tuple,tuple ,,,,, ,,,,, 85,85,85,85,85,85 256,256,256,256,256,256 DRAPLAGQQRVTGSRVLVDARDKLGIPWQYSENEKHGMFLMAFENKAGLPVEPATFQLYVPALSALWRDSGIREAFSRRSEFQLGDNEDDYREIKKSQGEKDSSSRLATSTSNTLSAN,DRAPLAGQQRVTGSRVLVDARDKLGIPWQYSENEKHGMFLMAFENKAGLPVEPATFQLYVPALSALWRDSGIREAFSRRSEFQLGDNEDDYREIKKSQGEKDSSSRLATSTSNTLSAN,DRAPLAGQQRVTGSRVLVDARDKLGIPWQYSENEKHGMFLMAFENKAGLPVEPATFQLYVPALSALWRDSGIREAFSRRSEFQLGDNEDDYREIKKSQGEKDSSSRLATSTSNTLSAN,DRAPLAGQQRVTGSRVLVDARDKLGIPWQYSENEKHGMFLMAFENKAGLPVEPATFQLYVPALSALWRDSGIREAFSRRSEFQLGDNEDDYREIKKSQGEKDSSSRLATSTSNTLSAN,DRAPLAGQQRVTGSRVLVDARDKLGIPWQYSENEKHGMFLMAFENKAGLPVEPATFQLYVPALSALWRDSGIREAFSRRSEFQLGDNEDDYREIKKSQGEKDSSSRLATSTSNTLSAN,DRAPLAGQQRVTGSRVLVDARDKLGIPWQYSENEKHGMFLMAFENKAGLPVEPATFQLYVPALSALWRDSGIREAFSRRSEFQLGDNEDDYREIKKSQGEKDSSSRLATSTSNTLSAN GNA12:NM_001282441[1,3]-AFF3:NM_001025108[15,24];GNA12:NM_001293092[1,2]-AFF3:NM_001025108[15,24];GNA12:NM_007353[1,2]-AFF3:NM_001025108[15,24];GNA12:NM_001282441[1,3]-AFF3:NM_002285[15,24];GNA12:NM_001293092[1,2]-AFF3:NM_002285[15,24];GNA12:NM_007353[1,2]-AFF3:NM_002285[15,24] geneB_CDS_mapping_exception=NM_001025108:-2;geneB_CDS_mapping_exception=NM_002285:-2 geneB_transcripts=NM_001025108,NM_002285 ,G,,,G, 1,1,1,1,1,1 SJBALL020589_D1 USP10 chr16 84733718 + coding DYRK1A chr21 38877584 + coding > 0 1 104 92 0.665 0.011 0 45 0.010 0.025 137 134 CACACAGGCTGTGGATAAACTACCTGATGGGGTTGTGCGGGCGAGAAGATGGCGGCGGCGGGGGAAGCAGCGTGAGCAGCCGGAGGATCGCGGAGTCCCAATGAAACGGGCAGCCATGGCCCTCCACAGCCCGCAGGAGTACAAACCACCAGGAACCCGTAAACTTCATAACATTCTTGGAGTGGAAACAGGAGGACCTGGTGGGCGACGTGCTGGGGAGTCAGGTAGATCGGAAGAGCGTCGT CTX 4.22 LQ 2 Fusion 1,1,1,1,1,1,1,1 NM_001272075,NM_005153,NM_001272075,NM_005153,NM_001272075,NM_005153,NM_001272075,NM_005153 56,52,56,52,56,52,56,52 1,1,1,1,1,1,1,1 tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple ,21,,21,,21,,21 9,9,9,9,9,9,9,9 30,30,30,30,30,30,30,30 NM_001396,NM_001396,NM_101395,NM_101395,NM_130436,NM_130436,NM_130438,NM_130438 414,414,414,414,405,405,414,414 9,9,11,11,9,9,9,9 tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 1240,1240,1240,1240,1213,1213,1240,1240 2292,2292,1755,1755,2265,2265,1590,1590 45,45,45,45,45,45,45,45 136,136,136,136,136,136,136,136 TQAVDKLPDGVVRARRWRRRGKQREQPEDRGVPMKRAAMALHSPQEYKPPGTRKLHNILGVETGGPGGRRAGESGRSEERR,TQAVDKLPDGVVRARRWRRRGKQREQPEDRGVPMKRAAMALHSPQEYKPPGTRKLHNILGVETGGPGGRRAGESGRSEERR,TQAVDKLPDGVVRARRWRRRGKQREQPEDRGVPMKRAAMALHSPQEYKPPGTRKLHNILGVETGGPGGRRAGESGRSEERR,TQAVDKLPDGVVRARRWRRRGKQREQPEDRGVPMKRAAMALHSPQEYKPPGTRKLHNILGVETGGPGGRRAGESGRSEERR,TQAVDKLPDGVVRARRWRRRGKQREQPEDRGVPMKRAAMALHSPQEYKPPGTRKLHNILGVETGGPGGRRAGESGRSEERR,TQAVDKLPDGVVRARRWRRRGKQREQPEDRGVPMKRAAMALHSPQEYKPPGTRKLHNILGVETGGPGGRRAGESGRSEERR,TQAVDKLPDGVVRARRWRRRGKQREQPEDRGVPMKRAAMALHSPQEYKPPGTRKLHNILGVETGGPGGRRAGESGRSEERR,TQAVDKLPDGVVRARRWRRRGKQREQPEDRGVPMKRAAMALHSPQEYKPPGTRKLHNILGVETGGPGGRRAGESGRSEERR USP10:NM_001272075[1,1]-DYRK1A:NM_001396[9,11];USP10:NM_005153[1,1]-DYRK1A:NM_001396[9,11];USP10:NM_001272075[1,1]-DYRK1A:NM_101395[11,13];USP10:NM_005153[1,1]-DYRK1A:NM_101395[11,13];USP10:NM_001272075[1,1]-DYRK1A:NM_130436[9,11];USP10:NM_005153[1,1]-DYRK1A:NM_130436[9,11];USP10:NM_001272075[1,1]-DYRK1A:NM_130438[9,10];USP10:NM_005153[1,1]-DYRK1A:NM_130438[9,10] geneB_transcripts=NM_001396,NM_101395,NM_130436,NM_130438 VVRARRWRRRGKQREQPEDRGVPMKRAAMALHSPQ,VVRARRWRRRGKQREQPEDRGVPMKRAAMALHSPQ,VVRARRWRRRGKQREQPEDRGVPMKRAAMALHSPQ,VVRARRWRRRGKQREQPEDRGVPMKRAAMALHSPQ,VVRARRWRRRGKQREQPEDRGVPMKRAAMALHSPQ,VVRARRWRRRGKQREQPEDRGVPMKRAAMALHSPQ,VVRARRWRRRGKQREQPEDRGVPMKRAAMALHSPQ,VVRARRWRRRGKQREQPEDRGVPMKRAAMALHSPQ 1,1,1,1,1,1,1,1 SJBALL020589_D1 ZFP41 chr8 144337292 + intron CXCR4 chr2 136873486 - coding > 1 3 131 47 0.000 0.598 43 51 0.154 0.000 143 139 GCCCAGCATTCAGGGCCAATAGGACGGATTCCCAGGTGTGGATTGACATCTCACCAAATGCCAGCCCCAGGTCATGCCCACAGAGACGCCTGCAGCAGCGCATGGCTGGCAGGACCACCTCAGCCTCTCTAGCAGCAGGCAGATATACACTTCAGATAACTACACCGAGGAAATGGGCTCAGGGG CTX 3.85 LQ 2 NLoss 0,0,3,3 NM_173832,NM_173832,, ,,, 2,2,, ,,, ,,, ,,, ,,, NM_001008540,NM_003467,NM_001008540,NM_003467 8,6,8,6 1,2,, blat,tuple,blat,tuple 24,16,24,16 1071,1059,1071,1059 46,47,, ,,, PSIQGQ*DGFPGVD*HLTKCQPQVMPTETPAAAHGWQDHLSLSSSRQIYTSDNYTEEMGSG,PSIQGQ*DGFPGVD*HLTKCQPQVMPTETPAAAHGWQDHLSLSSSRQIYTSDNYTEEMGSG,, ZFP41:NM_173832[1,2]-CXCR4:NM_001008540[1,1];ZFP41:NM_173832[1,2]-CXCR4:NM_003467[2,2];; geneB_transcripts=NM_001008540,NM_003467 ,,, 1,1,, SJBALL020589_D1 LUC7L chr16 279276 - coding GBA3 chr4 22729624 - intron > 3 0 151 52 0.000 0.856 111 0 0.034 0.154 152 149 CCGACGCGACCATCGTTTGTCGACGCCGCTGCCACCGCCTGCCTGAGAGAAGTCGTCGCGGCCGACCCCGTCGCCTCCGCCGGCTACCATGTCCGCCCAGGCGCAGATGCGGGCCCTGCTGGACCAGCTCATGGGCACGGCTCGGGACGGTCATCATCAGATTTGAAATATTTAAAGTGGATACAAAACTATTTCAGCAAT CTX 3.63 LQ 0 CLoss ,,,,, NM_018032,NM_018032,NM_018032,NM_201412,NM_201412,NM_201412 ,,,,, ,,,,, ,,,,, 61,61,61,61,61,61 ,,,,, ,,,,, NM_001128432,NM_001277225,NM_020973,NM_001128432,NM_001277225,NM_020973 ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001128432,NM_001277225,NM_020973;geneB_transcript_strand_disagree=NM_001128432;geneB_transcript_strand_disagree=NM_001277225;geneB_transcript_strand_disagree=NM_020973 ,,,,, ,,,,, SJBALL020589_D1 SFMBT1 chr3 52988329 - coding CHD1 chr5 98199290 - coding > 0 1 51 178 0.000 0.043 0 47 0.000 0.015 52 48 TAGAAGAAACAGGGTCCACAGCAGTTCCCTATGGGTCTTTTAAACATTGTAAAGAAAGAATGAGGCCTGTTAAAGCAGCTTTGAAACAACTTGATAGGCCTGAGAAAGGCCTTTCAGAAAGAGAACAACTAGAGCATACTAGACAATGTTTAATAAAAATTGGAGACCATATCACAGAATGTCTAAAAGAGTATACAAATCCTGAACAAATTAAGCAATGGAGAAAAAACCTGT CTX 3.50 LQ 2 Fusion 1 NM_016329 42 3 perfect 123 14 46 NM_001270 1417 31 tuple 4249 5133 15 47 EETGSTAVPYGSFKHCKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKEYTNPEQIKQWRKNL SFMBT1:NM_016329[1,3]-CHD1:NM_001270[31,35] geneB_transcripts=NM_001270 2 SJBALL020589_D1 CTCF chr16 67597195 - intron CCND3 chr6 41908324 - coding > 0 2 72 190 0.000 0.000 0 89 0.076 0.012 73 69 GGCGGCGACGCGCGGACTGGGAGCGACCGCCGAGCAGCCAAGCAGCTGGGAAGGCACGCAGGCCGGCGGGGTATGTGAGGAGCAGCGCTGTGAGGAGGAAGTCTTCCCCCTGGCCATGAACTACCTGGATCGCTACCTGTCTTGCGTCCCCACCCGAAAGGCGCAGTTGCAGCTCCTGGGTGCGGTCTGCATGCTGCTGGCCTCCAAGCTGCGCGAGACCACGCCCCTGACCATCGAAAAACTGTGCATCTACACCGAC CTX 3.18 LQ 2 upTSS 0,0,0,0,0,0,2,3,3 NM_001191022,NM_006565,NM_001191022,NM_006565,NM_001191022,NM_006565,,, ,,,,,,,, 1,1,1,1,1,1,,, ,,,,,,,, ,,,,,,,, ,,,,,,,, ,,,,,,,, NM_001136017,NM_001136017,NM_001287427,NM_001287427,NM_001760,NM_001760,NM_001136017,NM_001287427,NM_001760 -14,-14,17,17,67,67,-14,17,67 2,2,2,2,2,2,,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple ,,49,49,199,199,,49,199 636,636,729,729,879,879,636,729,879 26,26,23,23,23,23,,, ,,,,,,,, AATRGLGATAEQPSSWEGTQAGGVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTD,AATRGLGATAEQPSSWEGTQAGGVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTD,AATRGLGATAEQPSSWEGTQAGGVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTD,AATRGLGATAEQPSSWEGTQAGGVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTD,AATRGLGATAEQPSSWEGTQAGGVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTD,AATRGLGATAEQPSSWEGTQAGGVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTD,,, CTCF:NM_001191022[1,1]-CCND3:NM_001136017[2,5];CTCF:NM_006565[1,1]-CCND3:NM_001136017[2,5];CTCF:NM_001191022[1,1]-CCND3:NM_001287427[2,5];CTCF:NM_006565[1,1]-CCND3:NM_001287427[2,5];CTCF:NM_001191022[1,1]-CCND3:NM_001760[2,5];CTCF:NM_006565[1,1]-CCND3:NM_001760[2,5];;; geneB_breakpoint_not_mapped_to_CDS=NM_001136125;geneB_breakpoint_not_mapped_to_CDS=NM_001136126;geneB_breakpoint_not_mapped_to_CDS=NM_001287434 geneB_transcripts=NM_001136017,NM_001136125,NM_001136126,NM_001287427,NM_001287434,NM_001760;geneb_utr_codons=13;geneB_intronic=NM_001136125;geneB_intronic=NM_001136126;geneB_intronic=NM_001287434 ,,,,,,,, 1,1,1,1,1,1,,, SJBALL020589_D1 ASPSCR1 chr17 79935624 + coding ZNF384 chr12 6797395 - 5utr > 0 1 89 141 0.000 0.000 0 47 0.011 0.018 89 86 CAGGCGGCGGAGGCTCCGCGGTGTCGGTGCTGGCCCCGAACGGCCGGCGCCACACGGTGAAGGTGACGCCGAGCACCGTGCTGCTTCAGAAAGTTCAGGAGCCCTGGAAAGGAGAAGGAATAAGACGGCAGGAGGAAGAGAGAGAGAGGGTAGAATGGAAGAATCTCACTTCAATTCTAACCCGTACTTCTGGCCTTCTATCCCCACAGTCTCAGGTCAGATCGAGA CTX 2.75 LQ 3 CLoss 0,0,0,0,0,0,3,3,3 NM_001251888,NM_024083,NM_001251888,NM_024083,NM_001251888,NM_024083,,, ,,,,,,,, 1,1,1,1,1,1,,, ,,,,,,,, 102,102,102,102,102,102,,, ,,,,,,,, ,,,,,,,, NM_001039920,NM_001039920,NM_001135734,NM_001135734,NM_133476,NM_133476,NM_001039920,NM_001135734,NM_133476 -21,-21,-21,-21,-21,-21,-21,-21,-21 2,2,2,2,2,2,,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple ,,,,,,,, 1386,1386,1734,1734,1551,1551,1386,1734,1551 32,32,32,32,32,32,,, ,,,,,,,, RRRRLRGVGAGPERPAPHGEGDAEHRAASESSGALERRRNKTAGGREREGRMEESHFNSNPYFWPSIPTVSGQIE,RRRRLRGVGAGPERPAPHGEGDAEHRAASESSGALERRRNKTAGGREREGRMEESHFNSNPYFWPSIPTVSGQIE,RRRRLRGVGAGPERPAPHGEGDAEHRAASESSGALERRRNKTAGGREREGRMEESHFNSNPYFWPSIPTVSGQIE,RRRRLRGVGAGPERPAPHGEGDAEHRAASESSGALERRRNKTAGGREREGRMEESHFNSNPYFWPSIPTVSGQIE,RRRRLRGVGAGPERPAPHGEGDAEHRAASESSGALERRRNKTAGGREREGRMEESHFNSNPYFWPSIPTVSGQIE,RRRRLRGVGAGPERPAPHGEGDAEHRAASESSGALERRRNKTAGGREREGRMEESHFNSNPYFWPSIPTVSGQIE,,, ASPSCR1:NM_001251888[1,1]-ZNF384:NM_001039920[2,9];ASPSCR1:NM_024083[1,1]-ZNF384:NM_001039920[2,9];ASPSCR1:NM_001251888[1,1]-ZNF384:NM_001135734[2,11];ASPSCR1:NM_024083[1,1]-ZNF384:NM_001135734[2,11];ASPSCR1:NM_001251888[1,1]-ZNF384:NM_133476[2,10];ASPSCR1:NM_024083[1,1]-ZNF384:NM_133476[2,10];;; geneB_transcripts=NM_001039920,NM_001135734,NM_133476;geneb_utr_codons=13 ,,,,,,,, 1,1,1,1,1,1,,, SJBALL020589_D1 ZFP36L2 chr2 43453557 - 5utr ZFP36L2 chr2 43453746 - 5utr > 2 48 44 91 0.000 0.000 121 498 0.001 0.273 44 73 GCCCTCTCCTCTCGCCCCCCGGCAAACTTTCGGCCCCTCCCCGCACCGGGGGGCGAGAGGAGAGGGCGAGTTCCAGCAGTCCGCGAGCTGCCGTCGGCTCCGCGGGGGGGGGGGGGCGGGGACCCCGGGGCGCGGGGGGGGGCTCCTCGCTTCTCTTCTTCCCC Internal_dup 2.48 LQ 0 ITD NM_006887 geneB_no_transcripts SJBALL020589_D1 GNA15 chr19 3136595 + coding PWWP2A chr5 159507778 - coding > 2 1 43 121 0.000 0.000 12 39 0.005 0.143 43 40 GAAGAAGCAGGACCGCGGGGAGCTGAAGCTGCTGCTTTTGGGTCTCAACAAATGGCAGCTATTACATCAGACAGTGACGAGTCCTGCTGCTCCCTTACAGTGTCTGACAGACCACTGTGGATTCAGACTGGGAGCATTGAAGTTAACAGTGAAACGGGCAGCACAAAGAC CTX 2.36 LQ 2 Fusion 1 NM_002068 49 1 perfect 12 39 NM_052927 517 3 tuple 1550 1683 13 40 KKQDRGELKLLLLGLNKWQLLHQTVTSPAAPLQCLTDHCGFRLGALKLTVKRAAQR GNA15:NM_002068[1,1]-PWWP2A:NM_052927[3,4] geneB_breakpoint_not_mapped_to_CDS=NM_001267035 geneB_transcripts=NM_001267035,NM_052927;geneB_intronic=NM_001267035 1 SJBALL020589_D1 ERICH1-AS1 chr8 687827 + 5utr CDC42 chr1 22404921 + 5utr > 0 4 57 53 0.000 0.856 0 144 0.159 0.012 57 54 TGTCGCCCCGCACCTGCTGAGCCCGGAGCGTCCGAGGATGTCCGCGCTGAGGAAGGTCATCATCAGATTTGAAATATTTAAAGTGGATACAAAACTATTTCAGCAAT CTX 1.95 LQ 0 other 0,0,0 ,, ,, ,, ,, ,, ,, ,, NM_001039802,NM_001791,NM_044472 -16,-16,-16 ,, tuple,tuple,tuple ,, 576,576,576 ,, ,, ,, ;; geneA_no_transcript_IDs_found geneB_transcripts=NM_001039802,NM_001791,NM_044472;geneb_utr_codons=13 ,, ,, SJBALL020589_D1 PPP6R2 chr22 50870759 + coding SCO2 chr22 50962853 - 5utr > 0 5 42 71 0.653 0.000 0 128 0.017 0.133 43 43 TGCAGAGGATCCTGGAGGCCTGGGAAGCCAACGACCACACGCAGAGCATCAGATCCATGCTGCTGCTGACTCGGAGCCCCACAGCTTGGCACAGGCTCTCTCAGCTCAAGCCTC ITX 1.63 LQ 0 Fusion 1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1 NM_001242898,NM_001242899,NM_001242900,NM_014678,NM_001242898,NM_001242899,NM_001242900,NM_014678,NM_001242898,NM_001242899,NM_001242900,NM_014678,NM_001242898,NM_001242899,NM_001242900,NM_014678 468,469,468,468,468,469,468,468,468,469,468,468,468,469,468,468 12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12 tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 1400,1403,1400,1400,1400,1403,1400,1400,1400,1403,1400,1400,1400,1403,1400,1400 13,13,13,13,13,13,13,13,13,13,13,13,13,13,13,13 43,43,43,43,43,43,43,43,43,43,43,43,43,43,43,43 NM_001169109,NM_001169109,NM_001169109,NM_001169109,NM_001169110,NM_001169110,NM_001169110,NM_001169110,NM_001169111,NM_001169111,NM_001169111,NM_001169111,NM_005138,NM_005138,NM_005138,NM_005138 -4,-4,-4,-4,-4,-4,-4,-4,-4,-4,-4,-4,-4,-4,-4,-4 2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2 tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple ,,,,,,,,,,,,,,, 801,801,801,801,801,801,801,801,801,801,801,801,801,801,801,801 16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16 50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50 QRILEAWEANDHTQSIRSMLLLTRSPTAWHRLSQLKP,QRILEAWEANDHTQSIRSMLLLTRSPTAWHRLSQLKP,QRILEAWEANDHTQSIRSMLLLTRSPTAWHRLSQLKP,QRILEAWEANDHTQSIRSMLLLTRSPTAWHRLSQLKP,QRILEAWEANDHTQSIRSMLLLTRSPTAWHRLSQLKP,QRILEAWEANDHTQSIRSMLLLTRSPTAWHRLSQLKP,QRILEAWEANDHTQSIRSMLLLTRSPTAWHRLSQLKP,QRILEAWEANDHTQSIRSMLLLTRSPTAWHRLSQLKP,QRILEAWEANDHTQSIRSMLLLTRSPTAWHRLSQLKP,QRILEAWEANDHTQSIRSMLLLTRSPTAWHRLSQLKP,QRILEAWEANDHTQSIRSMLLLTRSPTAWHRLSQLKP,QRILEAWEANDHTQSIRSMLLLTRSPTAWHRLSQLKP,QRILEAWEANDHTQSIRSMLLLTRSPTAWHRLSQLKP,QRILEAWEANDHTQSIRSMLLLTRSPTAWHRLSQLKP,QRILEAWEANDHTQSIRSMLLLTRSPTAWHRLSQLKP,QRILEAWEANDHTQSIRSMLLLTRSPTAWHRLSQLKP PPP6R2:NM_001242898[1,12]-SCO2:NM_001169109[2,2];PPP6R2:NM_001242899[1,12]-SCO2:NM_001169109[2,2];PPP6R2:NM_001242900[1,12]-SCO2:NM_001169109[2,2];PPP6R2:NM_014678[1,12]-SCO2:NM_001169109[2,2];PPP6R2:NM_001242898[1,12]-SCO2:NM_001169110[2,2];PPP6R2:NM_001242899[1,12]-SCO2:NM_001169110[2,2];PPP6R2:NM_001242900[1,12]-SCO2:NM_001169110[2,2];PPP6R2:NM_014678[1,12]-SCO2:NM_001169110[2,2];PPP6R2:NM_001242898[1,12]-SCO2:NM_001169111[2,2];PPP6R2:NM_001242899[1,12]-SCO2:NM_001169111[2,2];PPP6R2:NM_001242900[1,12]-SCO2:NM_001169111[2,2];PPP6R2:NM_014678[1,12]-SCO2:NM_001169111[2,2];PPP6R2:NM_001242898[1,12]-SCO2:NM_005138[2,2];PPP6R2:NM_001242899[1,12]-SCO2:NM_005138[2,2];PPP6R2:NM_001242900[1,12]-SCO2:NM_005138[2,2];PPP6R2:NM_014678[1,12]-SCO2:NM_005138[2,2] geneB_no_inframe_contig_found geneB_transcripts=NM_001169109,NM_001169110,NM_001169111,NM_001185011,NM_005138,NM_152299;geneb_utr_codons=5;geneB_transcript_strand_disagree=NM_001185011;geneb_utr_codons=13;geneB_transcript_strand_disagree=NM_152299;reannotated geneB from SCO2,TYMP to SCO2 SI,SI,SI,SI,SI,SI,SI,SI,SI,SI,SI,SI,SI,SI,SI,SI 2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2 SJBALL020589_D1 CCDC88C chr14 91875003 - coding CIC chr19 42790920 + coding > 1 0 193 57 0.000 0.000 53 0 0.014 0.060 194 191 GTTTGGAAGCGGCAGCCAGGACAACCTGACTATGTACATGGATTTAGTGGACGGCATCTTTTTGAACCAAATTATGCTGCAAATAGATCCCAGGCCCACAAATCAACGCATCAATAAGCACGTCAACAATGATGTGAACCTTCGCATTCAGAATTTGACCATCTTGGTGAGAAACATTAAGACCTACTACCAGTGTGGACGAATGTGGAACCTCGCTCTGTGGCTGTGTTCCCTTGGCACTCCTTAG CTX 1.41 LQ 3 Fusion 0,0 NM_001080414, , 3, , 270, , , NM_015125,NM_015125 23,23 2, tuple,tuple 68,68 4827,4827 64, , VWKRQPGQPDYVHGFSGRHLFEPNYAANRSQAHKSTHQ*ARQQ*CEPSHSEFDHLGEKH*DLLPVWTNVEPRSVAVFPWHSL, CCDC88C:NM_001080414[1,3]-CIC:NM_015125[2,20]; geneB_transcripts=NM_015125 , 0, SJBALL020589_D1 LARGE chr22 33733632 - coding DDIT3 chr12 57911536 - 5utr > 0 1 48 149 0.000 0.000 1 47 0.000 0.016 48 48 CGGGAACTGTTTGGCTGCCCCAGTGAGGCTGATGTCAACAGTGAAAACTGTTCAAGAAGGAAGTGTATCTTCATACATCACCACACCTGAAAGCAGATGTGCTTTTCCAGACTGATCCAACTGCAGAGATGGCAGCTGAGTCATTGCCTTTCTCCTTCGGGACACTGTCCAGCTGGGAGCTGGAAGCCTGGTATGAG CTX 1.41 LQ 2 Fusion 1,1,0,0,0,0,0,0,1,1,0,0 NM_004737,NM_133642,NM_004737,NM_133642,NM_004737,NM_133642,NM_004737,NM_133642,NM_004737,NM_133642,NM_004737,NM_133642 430,430,,,,,,,430,430,, 11,10,11,10,11,10,11,10,11,10,11,10 tuple,tuple,,,,,,,tuple,tuple,, 1287,1287,1287,1287,1287,1287,1287,1287,1287,1287,1287,1287 15,15,,,,,,,15,15,, 47,47,,,,,,,47,47,, NM_001195053,NM_001195053,NM_001195054,NM_001195054,NM_001195055,NM_001195055,NM_001195056,NM_001195056,NM_001195057,NM_001195057,NM_004083,NM_004083 -55,-55,-38,-38,-30,-30,-92,-92,-21,-21,-26,-26 2,2,2,2,2,2,2,2,2,2,2,2 tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple ,,,,,,,,,,, 579,579,579,579,579,579,579,579,510,510,510,510 19,19,18,18,18,18,18,18,19,19,18,18 57,57,,,,,,,57,57,, RELFGCPSEADVNSENCSRRKCIFIHHHT*KQMCFSRLIQLQRWQLSHCLSPSGHCPAGSWKPGM,RELFGCPSEADVNSENCSRRKCIFIHHHT*KQMCFSRLIQLQRWQLSHCLSPSGHCPAGSWKPGM,GNCLAAPVRLMSTVKTVQEGSVSSYITTPESRCAFPD*SNCRDGS*VIAFLLRDTVQLGAGSLV*,GNCLAAPVRLMSTVKTVQEGSVSSYITTPESRCAFPD*SNCRDGS*VIAFLLRDTVQLGAGSLV*,GTVWLPQ*G*CQQ*KLFKKEVYLHTSPHLKADVLFQTDPTAEMAAESLPFSFGTLSSWELEAWYE,GTVWLPQ*G*CQQ*KLFKKEVYLHTSPHLKADVLFQTDPTAEMAAESLPFSFGTLSSWELEAWYE,GTVWLPQ*G*CQQ*KLFKKEVYLHTSPHLKADVLFQTDPTAEMAAESLPFSFGTLSSWELEAWYE,GTVWLPQ*G*CQQ*KLFKKEVYLHTSPHLKADVLFQTDPTAEMAAESLPFSFGTLSSWELEAWYE,RELFGCPSEADVNSENCSRRKCIFIHHHT*KQMCFSRLIQLQRWQLSHCLSPSGHCPAGSWKPGM,RELFGCPSEADVNSENCSRRKCIFIHHHT*KQMCFSRLIQLQRWQLSHCLSPSGHCPAGSWKPGM,GTVWLPQ*G*CQQ*KLFKKEVYLHTSPHLKADVLFQTDPTAEMAAESLPFSFGTLSSWELEAWYE,GTVWLPQ*G*CQQ*KLFKKEVYLHTSPHLKADVLFQTDPTAEMAAESLPFSFGTLSSWELEAWYE LARGE:NM_004737[1,11]-DDIT3:NM_001195053[2,4];LARGE:NM_133642[1,10]-DDIT3:NM_001195053[2,4];LARGE:NM_004737[1,11]-DDIT3:NM_001195054[2,4];LARGE:NM_133642[1,10]-DDIT3:NM_001195054[2,4];LARGE:NM_004737[1,11]-DDIT3:NM_001195055[2,4];LARGE:NM_133642[1,10]-DDIT3:NM_001195055[2,4];LARGE:NM_004737[1,11]-DDIT3:NM_001195056[2,3];LARGE:NM_133642[1,10]-DDIT3:NM_001195056[2,3];LARGE:NM_004737[1,11]-DDIT3:NM_001195057[2,4];LARGE:NM_133642[1,10]-DDIT3:NM_001195057[2,4];LARGE:NM_004737[1,11]-DDIT3:NM_004083[2,4];LARGE:NM_133642[1,10]-DDIT3:NM_004083[2,4] geneB_blat_issues=too_many_mismatches;ERROR_geneB_multiple_matching_frames=NM_001195057 geneB_transcripts=NM_001195053,NM_001195054,NM_001195055,NM_001195056,NM_001195057,NM_004083;geneb_utr_codons=13 CSR,CSR,,,,,,,CSR,CSR,, 0,0,1,1,2,2,2,2,0,0,2,2 SJBALL020589_D1 TPM4 chr19 16187507 + coding CIC chr19 42790923 + coding > 2 1 71 37 0.486 0.661 67 36 0.032 0.060 72 72 CGGACGAGGCGGAAGACCGCGCGCAGGGCCTGCAGCGGGAGCTGGACGGCGAGCGCGAGCGGCGCGAGAAATGTGGACGAATGTGGAACCTCGCTCTGTGGCTGTGTT DEL 0.80 LQ 3 Fusion 0,0,3 NM_001145160,NM_003290, ,, 2,1, ,, ,132, ,, ,, NM_015125,NM_015125,NM_015125 23,23,23 2,2, blat,blat,blat 68,68,68 4827,4827,4827 24,24, ,, GRGGRPRAGPAAGAGRRARAAREMWTNVEPRSVAV,GRGGRPRAGPAAGAGRRARAAREMWTNVEPRSVAV, TPM4:NM_001145160[1,2]-CIC:NM_015125[2,20];TPM4:NM_003290[1,1]-CIC:NM_015125[2,20]; geneB_transcripts=NM_015125 ,, 1,1, SJBALL020589_D1 PHKB chr16 47732500 + coding RAF1 chr3 12626752 - coding > 0 1 47 127 0.000 0.000 0 45 0.000 0.015 47 46 TGAATTTCAAAAAGATCAGAGTCGGCTAAAGGAAATTGAAAAACAAGCCCCAGAGGTGATCCGAATGCAGGATAACAACCCATTCAGTTTCCAGTCGGATGTCTACTCCTATGGCATCGTATTGTATGAACTGATGACGGGGGAGCTTCCTTATTCTCACATCAACAACCGAG CTX 0.80 LQ 2 Fusion 1,1 NM_000293,NM_001031835 1049,1042 30,31 perfect,perfect 3144,3123 14,14 45,45 NM_002880,NM_002880 513,513 15,15 tuple,tuple 1537,1537 1947,1947 15,15 46,46 EFQKDQSRLKEIEKQAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNR,EFQKDQSRLKEIEKQAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNR PHKB:NM_000293[1,30]-RAF1:NM_002880[15,17];PHKB:NM_001031835[1,31]-RAF1:NM_002880[15,17] geneB_transcripts=NM_002880 , 1,1 SJBALL020589_D1 FBXO31 chr16 87393902 - coding DYRK1A chr21 38844985 + coding > 0 1 42 224 0.000 0.000 0 41 0.000 0.060 42 42 CTGGAGATCACAGGCGTGTCTTGTCGGGACGTCTATGCGAAGGGAGGAGAGACTTCAGCATGCAAACCTTCATCTGTTCGGCTTGCACCGTCATTTTCATTCCATGCTGCTGGCCTTCAGATGGCTGGACAGATGCCCCATTCACATCAGTACAGTGACCGTCGCCAGCCAAACATAAGTGACCAACAGGTTTCTGCCTTATCATATTCTGACCAGATTCAGCAACCTCTAACTAACCAGAGGCGGATGCCCCAAACCTTCCGTGATCAAGTCAACAGAAAGTTTTCTCA CTX 0.66 LQ 2 Fusion 0,1,0,1,0,1,0,1 NM_001282683,NM_024735,NM_001282683,NM_024735,NM_001282683,NM_024735,NM_001282683,NM_024735 ,138,,138,,138,,138 3,2,3,2,3,2,3,2 ,perfect,,perfect,,perfect,,perfect ,411,,411,,411,,411 ,13,,13,,13,,13 ,41,,41,,41,,41 NM_001396,NM_001396,NM_101395,NM_101395,NM_130436,NM_130436,NM_130438,NM_130438 4,4,4,4,4,4,4,4 2,2,4,4,2,2,2,2 tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 11,11,11,11,11,11,11,11 2292,2292,1755,1755,2265,2265,1590,1590 14,14,14,14,14,14,14,14 ,42,,42,,42,,42 LEITGVSCRDVYAKGGETSACKPSSVRLAPSFSFHAAGLQMAGQMPHSHQYSDRRQPNISDQQVSALSYSDQIQQPLTNQRRMPQTFRDQVNRKFS,LEITGVSCRDVYAKGGETSACKPSSVRLAPSFSFHAAGLQMAGQMPHSHQYSDRRQPNISDQQVSALSYSDQIQQPLTNQRRMPQTFRDQVNRKFS,LEITGVSCRDVYAKGGETSACKPSSVRLAPSFSFHAAGLQMAGQMPHSHQYSDRRQPNISDQQVSALSYSDQIQQPLTNQRRMPQTFRDQVNRKFS,LEITGVSCRDVYAKGGETSACKPSSVRLAPSFSFHAAGLQMAGQMPHSHQYSDRRQPNISDQQVSALSYSDQIQQPLTNQRRMPQTFRDQVNRKFS,LEITGVSCRDVYAKGGETSACKPSSVRLAPSFSFHAAGLQMAGQMPHSHQYSDRRQPNISDQQVSALSYSDQIQQPLTNQRRMPQTFRDQVNRKFS,LEITGVSCRDVYAKGGETSACKPSSVRLAPSFSFHAAGLQMAGQMPHSHQYSDRRQPNISDQQVSALSYSDQIQQPLTNQRRMPQTFRDQVNRKFS,LEITGVSCRDVYAKGGETSACKPSSVRLAPSFSFHAAGLQMAGQMPHSHQYSDRRQPNISDQQVSALSYSDQIQQPLTNQRRMPQTFRDQVNRKFS,LEITGVSCRDVYAKGGETSACKPSSVRLAPSFSFHAAGLQMAGQMPHSHQYSDRRQPNISDQQVSALSYSDQIQQPLTNQRRMPQTFRDQVNRKFS FBXO31:NM_001282683[1,3]-DYRK1A:NM_001396[2,11];FBXO31:NM_024735[1,2]-DYRK1A:NM_001396[2,11];FBXO31:NM_001282683[1,3]-DYRK1A:NM_101395[4,13];FBXO31:NM_024735[1,2]-DYRK1A:NM_101395[4,13];FBXO31:NM_001282683[1,3]-DYRK1A:NM_130436[2,11];FBXO31:NM_024735[1,2]-DYRK1A:NM_130436[2,11];FBXO31:NM_001282683[1,3]-DYRK1A:NM_130438[2,10];FBXO31:NM_024735[1,2]-DYRK1A:NM_130438[2,10] geneB_transcripts=NM_001396,NM_101395,NM_130436,NM_130438 ,,,,,,, 0,0,0,0,0,0,0,0 SJBALL020589_D1 KDM6A chrX 44733233 + coding ZCCHC7 chr9 37349352 + coding > 1 0 136 41 0.000 0.000 38 0 0.045 0.000 137 135 GAGCGGCGAGAGCGAGGAGGCGTCCCCCAGCCTGACAGCCGAGGAGAGGGAGGCGCTCGGCGGACTGGACAGCCGCCTCTTTGGGTTCGTGAGATTTCATGAAGATGGCGCCAGGACGAAGGCCCTACTGGGCAAGACCAAACCTGGACCACCCAAAAAGCCGAAGACCCCTTCA CTX 0.28 LQ 2 Fusion 1,1,1,1,0,1,1,1,1,1,0,1,1,1,1,1,0,1,1,1,1,1,0,1 NM_001291415,NM_001291416,NM_001291417,NM_001291418,NM_001291421,NM_021140,NM_001291415,NM_001291416,NM_001291417,NM_001291418,NM_001291421,NM_021140,NM_001291415,NM_001291416,NM_001291417,NM_001291418,NM_001291421,NM_021140,NM_001291415,NM_001291416,NM_001291417,NM_001291418,NM_001291421,NM_021140 76,76,76,76,,76,76,76,76,76,,76,76,76,76,76,,76,76,76,76,76,,76 2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2 perfect,perfect,perfect,perfect,,perfect,perfect,perfect,perfect,perfect,,perfect,perfect,perfect,perfect,perfect,,perfect,perfect,perfect,perfect,perfect,,perfect 225,225,225,225,,225,225,225,225,225,,225,225,225,225,225,,225,225,225,225,225,,225 44,44,44,44,,44,44,44,44,44,,44,44,44,44,44,,44,44,44,44,44,,44 135,135,135,135,,135,135,135,135,135,,135,135,135,135,135,,135,135,135,135,135,,135 NM_001289119,NM_001289119,NM_001289119,NM_001289119,NM_001289119,NM_001289119,NM_001289120,NM_001289120,NM_001289120,NM_001289120,NM_001289120,NM_001289120,NM_001289121,NM_001289121,NM_001289121,NM_001289121,NM_001289121,NM_001289121,NM_032226,NM_032226,NM_032226,NM_032226,NM_032226,NM_032226 330,330,330,330,330,330,330,330,330,330,330,330,330,330,330,330,330,330,330,330,330,330,330,330 7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7 tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 988,988,988,988,988,988,988,988,988,988,988,988,988,988,988,988,988,988,988,988,988,988,988,988 1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632 45,45,45,45,45,45,45,45,45,45,45,45,45,45,45,45,45,45,45,45,45,45,45,45 136,136,136,136,,136,136,136,136,136,,136,136,136,136,136,,136,136,136,136,136,,136 SGESEEASPSLTAEEREALGGLDSRLFGFVRFHEDGARTKALLGKTKPGPPKKPKTPS,SGESEEASPSLTAEEREALGGLDSRLFGFVRFHEDGARTKALLGKTKPGPPKKPKTPS,SGESEEASPSLTAEEREALGGLDSRLFGFVRFHEDGARTKALLGKTKPGPPKKPKTPS,SGESEEASPSLTAEEREALGGLDSRLFGFVRFHEDGARTKALLGKTKPGPPKKPKTPS,SGESEEASPSLTAEEREALGGLDSRLFGFVRFHEDGARTKALLGKTKPGPPKKPKTPS,SGESEEASPSLTAEEREALGGLDSRLFGFVRFHEDGARTKALLGKTKPGPPKKPKTPS,SGESEEASPSLTAEEREALGGLDSRLFGFVRFHEDGARTKALLGKTKPGPPKKPKTPS,SGESEEASPSLTAEEREALGGLDSRLFGFVRFHEDGARTKALLGKTKPGPPKKPKTPS,SGESEEASPSLTAEEREALGGLDSRLFGFVRFHEDGARTKALLGKTKPGPPKKPKTPS,SGESEEASPSLTAEEREALGGLDSRLFGFVRFHEDGARTKALLGKTKPGPPKKPKTPS,SGESEEASPSLTAEEREALGGLDSRLFGFVRFHEDGARTKALLGKTKPGPPKKPKTPS,SGESEEASPSLTAEEREALGGLDSRLFGFVRFHEDGARTKALLGKTKPGPPKKPKTPS,SGESEEASPSLTAEEREALGGLDSRLFGFVRFHEDGARTKALLGKTKPGPPKKPKTPS,SGESEEASPSLTAEEREALGGLDSRLFGFVRFHEDGARTKALLGKTKPGPPKKPKTPS,SGESEEASPSLTAEEREALGGLDSRLFGFVRFHEDGARTKALLGKTKPGPPKKPKTPS,SGESEEASPSLTAEEREALGGLDSRLFGFVRFHEDGARTKALLGKTKPGPPKKPKTPS,SGESEEASPSLTAEEREALGGLDSRLFGFVRFHEDGARTKALLGKTKPGPPKKPKTPS,SGESEEASPSLTAEEREALGGLDSRLFGFVRFHEDGARTKALLGKTKPGPPKKPKTPS,SGESEEASPSLTAEEREALGGLDSRLFGFVRFHEDGARTKALLGKTKPGPPKKPKTPS,SGESEEASPSLTAEEREALGGLDSRLFGFVRFHEDGARTKALLGKTKPGPPKKPKTPS,SGESEEASPSLTAEEREALGGLDSRLFGFVRFHEDGARTKALLGKTKPGPPKKPKTPS,SGESEEASPSLTAEEREALGGLDSRLFGFVRFHEDGARTKALLGKTKPGPPKKPKTPS,SGESEEASPSLTAEEREALGGLDSRLFGFVRFHEDGARTKALLGKTKPGPPKKPKTPS,SGESEEASPSLTAEEREALGGLDSRLFGFVRFHEDGARTKALLGKTKPGPPKKPKTPS KDM6A:NM_001291415[1,2]-ZCCHC7:NM_001289119[7,9];KDM6A:NM_001291416[1,2]-ZCCHC7:NM_001289119[7,9];KDM6A:NM_001291417[1,2]-ZCCHC7:NM_001289119[7,9];KDM6A:NM_001291418[1,2]-ZCCHC7:NM_001289119[7,9];KDM6A:NM_001291421[1,2]-ZCCHC7:NM_001289119[7,9];KDM6A:NM_021140[1,2]-ZCCHC7:NM_001289119[7,9];KDM6A:NM_001291415[1,2]-ZCCHC7:NM_001289120[7,9];KDM6A:NM_001291416[1,2]-ZCCHC7:NM_001289120[7,9];KDM6A:NM_001291417[1,2]-ZCCHC7:NM_001289120[7,9];KDM6A:NM_001291418[1,2]-ZCCHC7:NM_001289120[7,9];KDM6A:NM_001291421[1,2]-ZCCHC7:NM_001289120[7,9];KDM6A:NM_021140[1,2]-ZCCHC7:NM_001289120[7,9];KDM6A:NM_001291415[1,2]-ZCCHC7:NM_001289121[7,9];KDM6A:NM_001291416[1,2]-ZCCHC7:NM_001289121[7,9];KDM6A:NM_001291417[1,2]-ZCCHC7:NM_001289121[7,9];KDM6A:NM_001291418[1,2]-ZCCHC7:NM_001289121[7,9];KDM6A:NM_001291421[1,2]-ZCCHC7:NM_001289121[7,9];KDM6A:NM_021140[1,2]-ZCCHC7:NM_001289121[7,9];KDM6A:NM_001291415[1,2]-ZCCHC7:NM_032226[7,9];KDM6A:NM_001291416[1,2]-ZCCHC7:NM_032226[7,9];KDM6A:NM_001291417[1,2]-ZCCHC7:NM_032226[7,9];KDM6A:NM_001291418[1,2]-ZCCHC7:NM_032226[7,9];KDM6A:NM_001291421[1,2]-ZCCHC7:NM_032226[7,9];KDM6A:NM_021140[1,2]-ZCCHC7:NM_032226[7,9] geneB_transcripts=NM_001289119,NM_001289120,NM_001289121,NM_032226 ,,,,,,,,,,,,,,,,,,,,,,, 1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1 SJBALL020589_D1 VAV2 chr9 136857197 - coding RALGDS chr9 135987542 - coding > 2 0 88 40 0.000 0.000 48 0 0.053 0.013 89 86 CGGGGTCCTTCTGTGCCAGCTGCTGCACAACCTCTCCCCCGGCTCCATCGACCTCAAGGACATCAACTTCCGGCCGCAGATGTCCCAGAGCTCCACGCAGGAGATCGGTGAGGAGCTGATCAACG DEL 0.25 LQ 2 Fusion 1,1,1,1,1,1,1,1,1,1 NM_001134398,NM_003371,NM_001134398,NM_003371,NM_001134398,NM_003371,NM_001134398,NM_003371,NM_001134398,NM_003371 69,69,69,69,69,69,69,69,69,69 1,1,1,1,1,1,1,1,1,1 perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect 204,204,204,204,204,204,204,204,204,204 28,28,28,28,28,28,28,28,28,28 87,87,87,87,87,87,87,87,87,87 NM_001042368,NM_001042368,NM_001271774,NM_001271774,NM_001271775,NM_001271775,NM_001271776,NM_001271776,NM_006266,NM_006266 7,7,45,45,61,61,62,62,62,62 2,2,2,2,2,2,2,2,2,2 tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 19,19,133,133,181,181,184,184,184,184 2580,2580,2658,2658,2742,2742,2709,2709,2745,2745 29,29,29,29,29,29,29,29,29,29 88,88,88,88,88,88,88,88,88,88 GVLLCQLLHNLSPGSIDLKDINFRPQMSQSSTQEIGEELIN,GVLLCQLLHNLSPGSIDLKDINFRPQMSQSSTQEIGEELIN,GVLLCQLLHNLSPGSIDLKDINFRPQMSQSSTQEIGEELIN,GVLLCQLLHNLSPGSIDLKDINFRPQMSQSSTQEIGEELIN,GVLLCQLLHNLSPGSIDLKDINFRPQMSQSSTQEIGEELIN,GVLLCQLLHNLSPGSIDLKDINFRPQMSQSSTQEIGEELIN,GVLLCQLLHNLSPGSIDLKDINFRPQMSQSSTQEIGEELIN,GVLLCQLLHNLSPGSIDLKDINFRPQMSQSSTQEIGEELIN,GVLLCQLLHNLSPGSIDLKDINFRPQMSQSSTQEIGEELIN,GVLLCQLLHNLSPGSIDLKDINFRPQMSQSSTQEIGEELIN VAV2:NM_001134398[1,1]-RALGDS:NM_001042368[2,18];VAV2:NM_003371[1,1]-RALGDS:NM_001042368[2,18];VAV2:NM_001134398[1,1]-RALGDS:NM_001271774[2,18];VAV2:NM_003371[1,1]-RALGDS:NM_001271774[2,18];VAV2:NM_001134398[1,1]-RALGDS:NM_001271775[2,18];VAV2:NM_003371[1,1]-RALGDS:NM_001271775[2,18];VAV2:NM_001134398[1,1]-RALGDS:NM_001271776[2,18];VAV2:NM_003371[1,1]-RALGDS:NM_001271776[2,18];VAV2:NM_001134398[1,1]-RALGDS:NM_006266[2,18];VAV2:NM_003371[1,1]-RALGDS:NM_006266[2,18] geneB_transcripts=NM_001042368,NM_001271774,NM_001271775,NM_001271776,NM_006266 ,,,,,,,,, 1,1,1,1,1,1,1,1,1,1 SJBALL020589_D1 ETV6 chr12 11905513 + coding ZCCHC7 chr9 37349354 + coding > 1 0 94 41 0.000 0.000 40 0 0.045 0.000 95 95 GTGCCGAGTTACGCTTCCTCGACGCCACTTCATGTTCCAGTGCCTCGAGCGCTCAGGATGGAGGAAGACTCGATCCGCCTGCCTGCGCACCTGCACCAAACCTGGACCACCCAAAAAGCCGAAGACCCCTTCAAG CTX 0.15 LQ 3 Fusion 0,0,0,0,3,3,3,3 NM_001987,NM_001987,NM_001987,NM_001987,,,, ,,,,,,, 2,2,2,2,,,, ,,,,,,, 163,163,163,163,,,, ,,,,,,, ,,,,,,, NM_001289119,NM_001289120,NM_001289121,NM_032226,NM_001289119,NM_001289120,NM_001289121,NM_032226 330,330,330,330,330,330,330,330 7,7,7,7,,,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 988,988,988,988,988,988,988,988 1632,1632,1632,1632,1632,1632,1632,1632 31,31,31,31,,,, ,,,,,,, CRVTLPRRHFMFQCLERSGWRKTRSACLRTCTKPGPPKKPKTPS,CRVTLPRRHFMFQCLERSGWRKTRSACLRTCTKPGPPKKPKTPS,CRVTLPRRHFMFQCLERSGWRKTRSACLRTCTKPGPPKKPKTPS,CRVTLPRRHFMFQCLERSGWRKTRSACLRTCTKPGPPKKPKTPS,,,, ETV6:NM_001987[1,2]-ZCCHC7:NM_001289119[7,9];ETV6:NM_001987[1,2]-ZCCHC7:NM_001289120[7,9];ETV6:NM_001987[1,2]-ZCCHC7:NM_001289121[7,9];ETV6:NM_001987[1,2]-ZCCHC7:NM_032226[7,9];;;; geneB_transcripts=NM_001289119,NM_001289120,NM_001289121,NM_032226 ,,,,,,, 1,1,1,1,,,, SJBALL020589_D1 MAP2K1 chr15 66679765 + coding MLLT4 chr6 168311781 + coding > 0 1 44 115 0.488 0.000 0 43 0.005 0.019 44 44 CCGGCCCCCGACGGCTCTGCAGTTAACGGGACCAGCTCTGCGGAAACACAGGATGCTTCTGGGCCTGAGCTGATACTACCTGCAAGCATTGAATTCAGGGAAAGTTCTGAAGATTCATTTTTGTCTGCCATTATAAATTATACTAATAGCTCTACAGTC CTX 0.15 LQ 2 Fusion 1,1,1 NM_002755,NM_002755,NM_002755 28,28,28 1,1,1 perfect,perfect,perfect 80,80,80 14,14,14 44,44,44 NM_001040000,NM_001207008,NM_001291964 590,574,549 14,13,14 blat,blat,blat 1770,1722,1647 4956,5232,5346 15,15,15 45,45,45 PAPDGSAVNGTSSAETQDASGPELILPASIEFRESSEDSFLSAIINYTNSSTV,PAPDGSAVNGTSSAETQDASGPELILPASIEFRESSEDSFLSAIINYTNSSTV,PAPDGSAVNGTSSAETQDASGPELILPASIEFRESSEDSFLSAIINYTNSSTV MAP2K1:NM_002755[1,1]-MLLT4:NM_001040000[14,30];MAP2K1:NM_002755[1,1]-MLLT4:NM_001207008[13,32];MAP2K1:NM_002755[1,1]-MLLT4:NM_001291964[14,33] geneB_transcripts=NM_001040000,NM_001207008,NM_001291964 ,, 0,0,0 SJBALL020589_D1 MLYCD chr16 83941887 + coding TOP2B chr3 25686949 - coding > 2 1 69 37 0.000 0.000 66 10 0.071 0.000 70 67 TCGACCCCTGGGGAGCCCCTGGTCGTTTTGCACGTGGCACTGACTGGTGACATCTCCAGCAACATCCAGAACAATGCTGCAAAAAAAGAAGAGTCAGAAACTG CTX 0.10 LQ 2 Fusion 1 NM_012213 267 3 perfect 798 22 68 NM_001068 24 2 tuple 70 4866 23 69 STPGEPLVVLHVALTGDISSNIQNNAAKKEESET MLYCD:NM_012213[1,3]-TOP2B:NM_001068[2,36] geneB_transcripts=NM_001068 0 SJBALL020589_D1 SKI chr1 2161176 + coding EBF1 chr5 158250326 - coding > 1 0 96 40 0.000 0.000 38 0 0.028 0.000 97 95 CGGGCAAGGAGGAGCAGGCGCGCCTCGGCCGCTGCCTGGACGACGTGAAGGAGAAATTCGACTATGGCAACAAGTACAAGCGGCGGGGGCCCCGGGTCGTGGTGTCTACGACAGTCAATGTGGATGGCCATGTCT CTX 0.08 LQ 3 Fusion 1,1,1 NM_003036,NM_003036,NM_003036 321,321,321 1,1,1 tuple,tuple,tuple 969,969,969 27,27,27 85,85,85 NM_001290360,NM_024007,NM_182708 213,213,190 8,8,7 tuple,tuple,tuple 637,637,568 1779,1776,1683 31,31,31 95,95,95 GKEEQARLGRCLDDVKEKFDYGNKYKRRGPRVVVSTTVNVDGHV,GKEEQARLGRCLDDVKEKFDYGNKYKRRGPRVVVSTTVNVDGHV,GKEEQARLGRCLDDVKEKFDYGNKYKRRGPRVVVSTTVNVDGHV SKI:NM_003036[1,1]-EBF1:NM_001290360[8,16];SKI:NM_003036[1,1]-EBF1:NM_024007[8,16];SKI:NM_003036[1,1]-EBF1:NM_182708[7,15] geneB_transcripts=NM_001290360,NM_024007,NM_182708 GPR,GPR,GPR 2,2,2 SJBALL020589_D1 OR2V1 chr5 180527454 - intergenic FOXO1 chr13 41240362 - 5utr > 0 1 37 157 0.000 0.019 1 44 0.000 0.035 40 45 CAGCAACAGCTCGGCGGGCTGGAAGAATTCAATTCGTCATAGGGGGCGGGGGTCACCATGGCCGAGGCGCCTCAGGTGGTGGAGATCGACCCGGACTTCGAGCCGCTGCCCCGGCCGCGCTCGTGCACCTGGCCGCTGCCCAGGCCGGAGTTTAGCCAGTCCAACTCGGCCACCTCCAGCCCGGCGCCGTCGGGCAGCGCGG CTX 0.03 LQ 2 upTSS 2 NM_002015 -4 tuple 1968 geneA_no_transcript_IDs_found geneB_transcripts=NM_002015;geneb_utr_codons=5 SJBALL020589_D1 TYW1 chr7 66582607 + coding BRAF chr7 140550014 - coding > 0 1 38 105 0.486 0.478 0 33 0.000 0.048 38 34 AGATTCCTTGACAGTTTAAAAGCCTTGGCAGTCAAGGTGTGGAATATCAAACAAATGATTAAGTTGACACAGGAACATATAGAGGCCCTATTGGACAAATTTGGTGGGGAGCATAATCCACCATCAATATATCTGGAGGC ITX 0.03 LQ 2 Fusion 1 NM_018264 567 13 perfect 1698 11 35 NM_004333 47 2 tuple 139 2301 12 36 RFLDSLKALAVKVWNIKQMIKLTQEHIEALLDKFGGEHNPPSIYLE TYW1:NM_018264[1,13]-BRAF:NM_004333[2,18] geneB_transcripts=NM_004333 0 SJBALL020589_D1 TIAL1 chr10 121336123 - coding TPR chr1 186289550 - coding > 0 2 40 100 0.000 0.000 0 54 0.010 0.015 40 40 TATACGGGCAACCATGGAATCAACAAGGATTTGGAGTAGATTCGCCGCAGGTTGCTGGTGTCCCTAGATTCCGGTTTGGGCCACCTGAAGATATGCCACAAACAAGTTCTAGTCACTCTGATCTTGGCCAGCTTGCTTCT CTX 0.03 LQ 2 Fusion 1,1 NM_001033925,NM_003252 352,335 11,11 perfect,perfect 1052,1001 12,12 40,40 NM_003292,NM_003292 2154,2154 46,46 blat,blat 6462,6462 7092,7092 13,13 41,41 YGQPWNQQGFGVDSPQVAGVPRFRFGPPEDMPQTSSSHSDLGQLAS,YGQPWNQQGFGVDSPQVAGVPRFRFGPPEDMPQTSSSHSDLGQLAS TIAL1:NM_001033925[1,11]-TPR:NM_003292[46,51];TIAL1:NM_003252[1,11]-TPR:NM_003292[46,51] geneB_transcripts=NM_003292;reannotated geneB from RNU6-72P,TPR to TPR , 2,2 SJBALL020589_D1 TRABD chr22 50633427 + coding JUP chr17 39925884 - coding > 0 1 62 223 0.000 0.000 0 50 0.002 0.006 62 51 AGCTCTGCCAATATCGTGTGTCCATGCTGAAGATGGACGAGAGCACGCTGCTGCGGGAGGCCATGTGCCCTGGTGTGTCAGGCGAGGACAGCTCGCTTCTGCTGGCCACCCAGGTGGAGGGGCAGGCCACCAACCTGCAGCGACTGGCCGAGCCGTCCCAGCTGCTCAAGTCGGCCATTGTGCATCTCATCAACTACCAGGACGATGCCGAGCTGGCCACTCGCGCCCTGCCCGAGCTCACCAAACTGCTCAACGACGAGGACCCGGTGGTGGT CTX 0.02 LQ 2 Fusion 1,1 NM_025204,NM_025204 124,124 5,5 perfect,perfect 378,378 16,16 52,52 NM_002230,NM_021991 85,85 3,3 blat,blat 254,254 2238,2238 17,17 53,53 LCQYRVSMLKMDESTLLREAMCPGVSGEDSSLLLATQVEGQATNLQRLAEPSQLLKSAIVHLINYQDDAELATRALPELTKLLNDEDPVV,LCQYRVSMLKMDESTLLREAMCPGVSGEDSSLLLATQVEGQATNLQRLAEPSQLLKSAIVHLINYQDDAELATRALPELTKLLNDEDPVV TRABD:NM_025204[1,5]-JUP:NM_002230[3,14];TRABD:NM_025204[1,5]-JUP:NM_021991[3,15] geneB_transcripts=NM_002230,NM_021991 , 2,2 SJBALL020589_D1 PANX1 chr11 93862660 + coding ETS1 chr11 128333523 - coding > 1 0 141 38 0.000 0.000 35 0 0.022 0.000 142 140 TTTCTTGCTGAAGGAGCCCACGGAGCCCAAGTTCAAGGGGCTGCGACTGGAGCTGGCTGTGGACAAGATGGTCACGTGCATTGCGGTGGGGCTGCCCCTGCTGCTCATCTCGCTGGCCTTCGCGCAGGAGATCTCGATTGGCAGTGGACCAATCCAGCTATGGCAGTTTCTTCTGGA ITX 0.02 LQ 2 Fusion 1,1,1 NM_015368,NM_015368,NM_015368 61,61,61 1,1,1 perfect,perfect,perfect 181,181,181 45,45,45 138,138,138 NM_001143820,NM_001162422,NM_005238 375,115,331 9,3,7 tuple,tuple,tuple 1124,344,992 1458,678,1326 46,46,46 139,139,139 FLLKEPTEPKFKGLRLELAVDKMVTCIAVGLPLLLISLAFAQEISIGSGPIQLWQFLL,FLLKEPTEPKFKGLRLELAVDKMVTCIAVGLPLLLISLAFAQEISIGSGPIQLWQFLL,FLLKEPTEPKFKGLRLELAVDKMVTCIAVGLPLLLISLAFAQEISIGSGPIQLWQFLL PANX1:NM_015368[1,1]-ETS1:NM_001143820[9,10];PANX1:NM_015368[1,1]-ETS1:NM_001162422[3,4];PANX1:NM_015368[1,1]-ETS1:NM_005238[7,8] geneB_transcripts=NM_001143820,NM_001162422,NM_005238 ,, 1,1,1 SJBALL020589_D1 CHSY1 chr15 101719142 - coding WHSC1 chr4 1978227 + coding > 2 0 73 39 0.000 0.000 58 0 0.014 0.000 74 67 CAGGGGTGCAGTGTGTCTGGTCTTATGAGATGCAGCAGCTTTTTTATGAGAATTACGAGCAGAACAAAAAGGGCAAAAAGACCAAGAAGAAAACGAGGCGGCGCA CTX 0.01 LQ 2 Fusion 1,1,1,1 NM_014918,NM_014918,NM_014918,NM_014918 286,286,286,286 3,3,3,3 perfect,perfect,perfect,perfect 860,860,860,860 21,21,21,21 67,67,67,67 NM_001042424,NM_133330,NM_133331,NM_133335 1216,1216,1216,1216 21,23,22,21 blat,blat,blat,blat 3647,3647,3647,3647 4098,4098,4098,4098 22,22,22,22 68,68,68,68 GVQCVWSYEMQQLFYENYEQNKKGKKTKKKTRRR,GVQCVWSYEMQQLFYENYEQNKKGKKTKKKTRRR,GVQCVWSYEMQQLFYENYEQNKKGKKTKKKTRRR,GVQCVWSYEMQQLFYENYEQNKKGKKTKKKTRRR CHSY1:NM_014918[1,3]-WHSC1:NM_001042424[21,22];CHSY1:NM_014918[1,3]-WHSC1:NM_133330[23,24];CHSY1:NM_014918[1,3]-WHSC1:NM_133331[22,23];CHSY1:NM_014918[1,3]-WHSC1:NM_133335[21,22] geneB_transcripts=NM_001042424,NM_133330,NM_133331,NM_133335 ,,, 2,2,2,2 SJBALL020589_D1 TNK2,MIR6829 chr3 195622923 - intron TCF12 chr15 57212088 + 5utr > 0 1 38 136 0.000 0.000 1 34 0.000 0.019 38 35 GTCCGGGCCCTCGTGTCACCGCTCTGAAGTCAAGGAGGACCTGCTAGAAGTGGCCGAAGATGAATCCCCAGCAACAACGCATGGCCGCTATAGGGACCGACAAGGAGCTGAGCGACCTACTGGACTTCAGTGCGATGTTTTCCCCACCTGTTAATAGTGGGAAAACTAGAC CTX 0.01 LQ 2 upTSS 0,0,0,0,2,2,2,2 NM_005781,NM_005781,NM_005781,NM_005781,,,, ,,,,,,, 1,1,1,1,,,, ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, NM_003205,NM_207036,NM_207037,NM_207038,NM_003205,NM_207036,NM_207037,NM_207038 -7,-3,-7,-3,-7,-3,-7,-3 2,2,2,2,,,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple ,,,,,,, 2049,2121,2121,2049,2049,2121,2121,2049 14,18,14,18,,,, ,,,,,,, PGPRVTALKSRRTC*KWPKMNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTR,PGPRVTALKSRRTC*KWPKMNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTR,PGPRVTALKSRRTC*KWPKMNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTR,PGPRVTALKSRRTC*KWPKMNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTR,,,, TNK2:NM_005781[1,1]-TCF12:NM_003205[2,20];TNK2:NM_005781[1,1]-TCF12:NM_207036[2,21];TNK2:NM_005781[1,1]-TCF12:NM_207037[2,21];TNK2:NM_005781[1,1]-TCF12:NM_207038[2,20];;;; geneB_transcripts=NM_003205,NM_207036,NM_207037,NM_207038;geneb_utr_codons=8;geneb_utr_codons=4 ,,,,,,, 2,2,2,2,,,, SJBALL020589_D1 RAP1GAP2 chr17 2703845 + coding ZMYM2 chr13 20534098 + 5utr > 1 0 78 40 0.000 0.000 39 0 0.012 0.073 96 95 CGACGCTCTTCCGATCTTTTGGCCGGAAGCGCAGTGTCTCCTTTGGGGGCTTCGGATGGATCGACAAGACCATGCTGGCAAGTCTGAAGGTCAAGACCAAGAATCGCCTTCAGCCCTGTCTGGTGCATCCTTGG CTX 0.01 LQ 2 Fusion 0,0,1,1,0,0,1,1 NM_001100398,NM_015085,NM_001100398,NM_015085,NM_001100398,NM_015085,NM_001100398,NM_015085 ,,28,28,,,28,28 2,2,2,2,2,2,2,2 ,,tuple,tuple,,,tuple,tuple 80,80,80,80,80,80,80,80 ,,30,30,,,30,30 ,,94,94,,,94,94 NM_001190964,NM_001190964,NM_001190965,NM_001190965,NM_003453,NM_003453,NM_197968,NM_197968 -41,-41,-26,-26,-41,-41,-26,-26 2,2,2,2,2,2,2,2 tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple ,,,,,,, 4134,4134,4134,4134,4134,4134,4134,4134 34,34,33,33,34,34,33,33 ,,101,101,,,101,101 DALPIFWPEAQCLLWGLRMDRQDHAGKSEGQDQESPSALSGASL,DALPIFWPEAQCLLWGLRMDRQDHAGKSEGQDQESPSALSGASL,TLFRSFGRKRSVSFGGFGWIDKTMLASLKVKTKNRLQPCLVHPW,TLFRSFGRKRSVSFGGFGWIDKTMLASLKVKTKNRLQPCLVHPW,DALPIFWPEAQCLLWGLRMDRQDHAGKSEGQDQESPSALSGASL,DALPIFWPEAQCLLWGLRMDRQDHAGKSEGQDQESPSALSGASL,TLFRSFGRKRSVSFGGFGWIDKTMLASLKVKTKNRLQPCLVHPW,TLFRSFGRKRSVSFGGFGWIDKTMLASLKVKTKNRLQPCLVHPW RAP1GAP2:NM_001100398[1,2]-ZMYM2:NM_001190964[2,26];RAP1GAP2:NM_015085[1,2]-ZMYM2:NM_001190964[2,26];RAP1GAP2:NM_001100398[1,2]-ZMYM2:NM_001190965[2,25];RAP1GAP2:NM_015085[1,2]-ZMYM2:NM_001190965[2,25];RAP1GAP2:NM_001100398[1,2]-ZMYM2:NM_003453[2,26];RAP1GAP2:NM_015085[1,2]-ZMYM2:NM_003453[2,26];RAP1GAP2:NM_001100398[1,2]-ZMYM2:NM_197968[2,25];RAP1GAP2:NM_015085[1,2]-ZMYM2:NM_197968[2,25] geneB_transcripts=NM_001190964,NM_001190965,NM_003453,NM_197968;geneb_utr_codons=13 ,,TK,TK,,,TK,TK 1,1,2,2,1,1,2,2 SJBALL020589_D1 ABI1 chr10 27112065 - coding RNF111 chr15 59377419 + intron > 0 1 35 99 0.000 0.000 0 39 0.000 0.043 43 39 CTAGCTAGAGATTGGAGTCTTCCATCAATCATATCTCACAGGTGTAGAAGAGTTTGCTATTCTAATCGTCCTTAATGTCAACAACCAAGAGATGATATCTAGCAAACAAAAACCCAGAGAGCATCTGTAACATTCAGA CTX 0.01 LQ 3 CLoss ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, NM_001012750,NM_001012750,NM_001012750,NM_001012750,NM_001012751,NM_001012751,NM_001012751,NM_001012751,NM_001012752,NM_001012752,NM_001012752,NM_001012752,NM_001178116,NM_001178116,NM_001178116,NM_001178116,NM_001178119,NM_001178119,NM_001178119,NM_001178119,NM_001178120,NM_001178120,NM_001178120,NM_001178120,NM_001178121,NM_001178121,NM_001178121,NM_001178121,NM_001178122,NM_001178122,NM_001178122,NM_001178122,NM_001178123,NM_001178123,NM_001178123,NM_001178123,NM_001178124,NM_001178124,NM_001178124,NM_001178124,NM_001178125,NM_001178125,NM_001178125,NM_001178125,NM_005470,NM_005470,NM_005470,NM_005470 ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 285,285,285,285,285,285,285,285,285,285,285,285,336,336,336,336,285,285,285,285,285,285,285,285,285,285,285,285,285,285,285,285,285,285,285,285,285,285,285,285,285,285,285,285,285,285,285,285 ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, NM_001270528,NM_001270529,NM_001270530,NM_017610,NM_001270528,NM_001270529,NM_001270530,NM_017610,NM_001270528,NM_001270529,NM_001270530,NM_017610,NM_001270528,NM_001270529,NM_001270530,NM_017610,NM_001270528,NM_001270529,NM_001270530,NM_017610,NM_001270528,NM_001270529,NM_001270530,NM_017610,NM_001270528,NM_001270529,NM_001270530,NM_017610,NM_001270528,NM_001270529,NM_001270530,NM_017610,NM_001270528,NM_001270529,NM_001270530,NM_017610,NM_001270528,NM_001270529,NM_001270530,NM_017610,NM_001270528,NM_001270529,NM_001270530,NM_017610,NM_001270528,NM_001270529,NM_001270530,NM_017610 ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 2451,2421,2424,2424,2451,2421,2424,2424,2451,2421,2424,2424,2451,2421,2424,2424,2451,2421,2424,2424,2451,2421,2424,2424,2451,2421,2424,2424,2451,2421,2424,2424,2451,2421,2424,2424,2451,2421,2424,2424,2451,2421,2424,2424,2451,2421,2424,2424 2988,2958,2985,2961,2988,2958,2985,2961,2988,2958,2985,2961,2988,2958,2985,2961,2988,2958,2985,2961,2988,2958,2985,2961,2988,2958,2985,2961,2988,2958,2985,2961,2988,2958,2985,2961,2988,2958,2985,2961,2988,2958,2985,2961,2988,2958,2985,2961 ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001270528,NM_001270529,NM_001270530,NM_017610 ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, SJBALL020589_D1 CD74 chr5 149786889 + coding CD74 chr5 149792314 - coding ? 0 0 70 90 0.000 0.082 1 1 0.000 0.173 122 135 GCTGGTCATCCATGACTGGCTTCTGATCTTCCCGACAGCTCCTGCTTCTCCTCCTGGCCAGCGAGGAGCAGAGTCACCAGGATGGAAAAGCCTGTGTACAGGGCTCCGCGGCTGCACTTGCTCTCCGGGGTCCCAGATGCACAGGAGGAGAAGCAGGAGCTGTCGGGAAGATCAGAAGCCAGTCATGGATGACCAGCGCGACCTTATCTCCAACAATGAGCAACT Internal_inv 0.01 LQ 3 Fusion unhandled orientation ? SJBALL020589_D1 CD74 chr5 149792313 + coding CD74 chr5 149786884 - coding ? 0 0 57 67 0.540 0.000 1 1 0.173 0.000 58 51 TCATCCATGACTGGCTTCTGATCTTCCCGACAGCTCCTGCTTCTCCTCCTGTGCATCCGCGGAGCCCTGTACACAGGCTTTTCCATCCTGGTGACTCTGCTCCTCGCTGGCCAGGCCAGCGAGGAGCAGAGATGCACAGGAGGAGAAGCAGGAGCTGTCGGGAAGATCAG Internal_inv 0.01 LQ 3 Fusion unhandled orientation ? SJBALL020589_D1 CD74 chr5 149785884 + coding CD74 chr5 149792315 - coding ? 0 0 63 83 0.000 0.078 1 1 0.000 0.173 117 122 CCCCAGGGGCCCATGCAGAATGCCACCAAGTATGGCAACATGACAGTCAGCATTCTGGAGCAGGTGCATCACATGGTCCTCTGTCATGTTGCCATACTTGGTGGCATTCTGCATGGGTCCCAGATGCACAGGAGGAGAAGCAGGAGCTGTCGGGAAGATCAGAAGCCAGTCATGGATGACCAGCGCGACCTTATCTCCAACCATG Internal_inv 0.01 LQ 3 Fusion unhandled orientation ? SJBALL020589_D1 CD74 chr5 149786725 + coding CD74 chr5 149792317 - coding ? 0 0 56 83 0.034 0.000 1 1 0.000 0.517 57 57 CATCAGCAGCGGGGTGGCCATGCGCATCTTGCTCACAGGCTTGGGAGGCTTGGGAAGCCCAGATGCACAGGAGGAGAAGCAGGAGCTGTCGGGAAGATCAGAAGCCAGTCATGGATGACCAGCGCGACCTTATCTCCAAC Internal_inv 0.00 LQ 3 Fusion unhandled orientation ? SJBALL020589_D1 MTURN chr7 30174916 + coding SKI chr1 2234417 + coding > 1 1 150 35 0.000 0.000 33 110 0.017 0.000 151 150 AGCTGGCCGACGTTGCGGAGAAATGGTGCTCCAACACGCCCTTCGAGCTCATCGCAACCGAGGAGACCGAACGCAGGATGGATTTCTACGCCGACCCCGGCGTCTCCTTCTATGTGCTGTGTCCGGACAACGGCTGCGGCGACAATTTTGTCTCCTCTGAGCCTCCGGCCTCCATAAGACCCAA CTX 0.00 LQ 2 Fusion 1 NM_152793 55 1 perfect 162 48 148 NM_003036 324 2 tuple 970 2187 49 149 LADVAEKWCSNTPFELIATEETERRMDFYADPGVSFYVLCPDNGCGDNFVSSEPPASIRP MTURN:NM_152793[1,1]-SKI:NM_003036[2,7] geneB_transcripts=NM_003036 2 SJBALL020589_D1 TYW1B chr7 72159680 - coding BRAF chr7 140550014 - coding > 0 1 32 105 0.568 0.478 1 33 0.000 0.048 34 34 AGATTCCTTGACAGTTTAAAAGCCTTGGCAGTCAAGGTGTGGAATATCAAACAAATGATTAAGTTGACACAGGAACATATAGAGGCCCTATTGGACAAATTTGGTGGGGAGCATAATCCACCATCAATATATCTGGAGGC INS 0.00 LQ 2 Fusion 1 NM_001145440 503 tuple 11 35 NM_004333 47 2 tuple 139 2301 12 36 RFLDSLKALAVKVWNIKQMIKLTQEHIEALLDKFGGEHNPPSIYLE TYW1B:NM_001145440[1,0]-BRAF:NM_004333[2,18] geneB_transcripts=NM_004333 0 SJBALL020589_D1 CD74 chr5 149786889 + coding CD74 chr5 149792321 - coding ? 0 0 49 98 0.611 0.000 1 1 0.000 0.349 122 128 GCTGGTCATCCATGACTGGCTTCTGATCTTCCCGACAGCTCCTGCTTCTCCTCCTGGCCAGCGAGGAGCAGAGTCACCAGGATGGAAAAGCCTGTGTACAGGGCTCCGCGGCTGCACTTGCTCTCCGGGGTCCCAGATGCACAGGAGGAGAAGCAGGAGCTGTCGGGAAGATCAGAAGCCAGTCATGGATGACCAGCGCGACCTTATCTCCAACAATGAGCAACT Internal_inv 0.00 LQ 3 Fusion unhandled orientation ? SJBALL020589_D1 PPP6C chr9 127933368 - coding EBF1 chr5 158204549 - coding > 0 1 41 111 0.000 0.000 0 42 0.000 0.007 41 43 CCAGTATCAACACCAGTAACAGTGTGTGGAGATATCCATGGTGAGTTGATCACTCCTCATGCCATCCGTGTGCAGACCCCTCCTCGGCACATCCCTGGTGTTGTGGAAGTCACACTGTCCTACAAATCTAAGCAGTTCTGCAAAGGAACACCAG CTX 0.00 LQ 2 Fusion 1,1,1,1,1,1,1,1,1 NM_001123355,NM_001123369,NM_002721,NM_001123355,NM_001123369,NM_002721,NM_001123355,NM_001123369,NM_002721 94,57,57,94,57,57,94,57,57 3,2,2,3,2,2,3,2,2 tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 278,167,167,278,167,167,278,167,167 13,13,13,13,13,13,13,13,13 41,41,41,41,41,41,41,41,41 NM_001290360,NM_001290360,NM_001290360,NM_024007,NM_024007,NM_024007,NM_182708,NM_182708,NM_182708 305,305,305,304,304,304,273,273,273 10,10,10,10,10,10,9,9,9 tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 913,913,913,910,910,910,817,817,817 1779,1779,1779,1776,1776,1776,1683,1683,1683 15,15,15,15,15,15,15,15,15 45,45,45,45,45,45,45,45,45 PVSTPVTVCGDIHGELITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGTP,PVSTPVTVCGDIHGELITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGTP,PVSTPVTVCGDIHGELITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGTP,PVSTPVTVCGDIHGELITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGTP,PVSTPVTVCGDIHGELITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGTP,PVSTPVTVCGDIHGELITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGTP,PVSTPVTVCGDIHGELITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGTP,PVSTPVTVCGDIHGELITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGTP,PVSTPVTVCGDIHGELITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGTP PPP6C:NM_001123355[1,3]-EBF1:NM_001290360[10,16];PPP6C:NM_001123369[1,2]-EBF1:NM_001290360[10,16];PPP6C:NM_002721[1,2]-EBF1:NM_001290360[10,16];PPP6C:NM_001123355[1,3]-EBF1:NM_024007[10,16];PPP6C:NM_001123369[1,2]-EBF1:NM_024007[10,16];PPP6C:NM_002721[1,2]-EBF1:NM_024007[10,16];PPP6C:NM_001123355[1,3]-EBF1:NM_182708[9,15];PPP6C:NM_001123369[1,2]-EBF1:NM_182708[9,15];PPP6C:NM_002721[1,2]-EBF1:NM_182708[9,15] geneB_transcripts=NM_001290360,NM_024007,NM_182708 E,E,E,E,E,E,E,E,E 0,0,0,0,0,0,0,0,0 SJBALL020589_D1 NOP2 chr12 6672763 - intron LAPTM5 chr1 31226345 + intron ? 2 0 83 44 0.000 0.482 65 1 0.008 0.000 84 89 GGGGCCTGCAGATCAATGTGGATGAGGAACCATTTGTGCTGCCCCCTGCTGGGGAGATGGAGCAGGATATCCTTGCAGGGCAGGCGGCGTGGTCTTCCTCCCAAAAGCACATTCCCAGACTAATCATGAGAA CTX 0.00 LQ 3 other unhandled orientation ? SJBALL020589_D1 IFITM2 chr11 308438 + coding SEC31A chr4 83740406 - coding > 0 2 34 90 0.850 0.032 0 44 0.003 0.027 34 35 CCTGGGCTTCATAGCATTCGCGTACTCCGTGAAGCTTTCACCAACAATCACCAGTGGTTTACACAACATTGCAAGGAGCATTGAAACTCGAAACTACTCAGAAGGATTGACCATGCATACCCACA CTX 0.00 LQ 2 Fusion 1,1,1,1,1,1,1,1 NM_006435,NM_006435,NM_006435,NM_006435,NM_006435,NM_006435,NM_006435,NM_006435 83,83,83,83,83,83,83,83 1,1,1,1,1,1,1,1 perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect 246,246,246,246,246,246,246,246 10,10,10,10,10,10,10,10 33,33,33,33,33,33,33,33 NM_001077206,NM_001077207,NM_001077208,NM_001191049,NM_001300744,NM_001300745,NM_014933,NM_016211 1048,1162,1147,1142,1009,1108,1162,1123 26,27,27,26,24,25,27,25 tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 3142,3484,3439,3424,3025,3322,3484,3367 3321,3663,3618,3603,3204,3501,3663,3546 11,11,11,11,11,11,11,11 34,34,34,34,34,34,34,34 LGFIAFAYSVKLSPTITSGLHNIARSIETRNYSEGLTMHTH,LGFIAFAYSVKLSPTITSGLHNIARSIETRNYSEGLTMHTH,LGFIAFAYSVKLSPTITSGLHNIARSIETRNYSEGLTMHTH,LGFIAFAYSVKLSPTITSGLHNIARSIETRNYSEGLTMHTH,LGFIAFAYSVKLSPTITSGLHNIARSIETRNYSEGLTMHTH,LGFIAFAYSVKLSPTITSGLHNIARSIETRNYSEGLTMHTH,LGFIAFAYSVKLSPTITSGLHNIARSIETRNYSEGLTMHTH,LGFIAFAYSVKLSPTITSGLHNIARSIETRNYSEGLTMHTH IFITM2:NM_006435[1,1]-SEC31A:NM_001077206[26,26];IFITM2:NM_006435[1,1]-SEC31A:NM_001077207[27,27];IFITM2:NM_006435[1,1]-SEC31A:NM_001077208[27,27];IFITM2:NM_006435[1,1]-SEC31A:NM_001191049[26,26];IFITM2:NM_006435[1,1]-SEC31A:NM_001300744[24,24];IFITM2:NM_006435[1,1]-SEC31A:NM_001300745[25,25];IFITM2:NM_006435[1,1]-SEC31A:NM_014933[27,27];IFITM2:NM_006435[1,1]-SEC31A:NM_016211[25,25] geneB_transcripts=NM_001077206,NM_001077207,NM_001077208,NM_001191049,NM_001300744,NM_001300745,NM_014933,NM_016211 ,,,,,,, 1,1,1,1,1,1,1,1 SJBALL020589_D1 DGUOK chr2 74185373 + coding PCBP2 chr12 53853054 + coding > 1 0 119 31 0.000 0.508 27 0 0.044 0.003 120 117 GTCTGTGTACAGTGACAGGCTCCACTTTGAGGCTCTGATGAACATTCCAGTGCTGGTGTTGGATGTCAATGATGATTTTTCTGAGGAAGTAACCAAACAAGAAGACCTCATGAGAGAGGACATAAGCAGCTCTATGACCAATAGCAC CTX 0.00 LQ 2 Fusion 1,1,1,1,1,1,1,1,1,1,1,1,1,1 NM_080916,NM_080918,NM_080916,NM_080918,NM_080916,NM_080918,NM_080916,NM_080918,NM_080916,NM_080918,NM_080916,NM_080918,NM_080916,NM_080918 269,181,269,181,269,181,269,181,269,181,269,181,269,181 6,4,6,4,6,4,6,4,6,4,6,4,6,4 tuple,perfect,tuple,perfect,tuple,perfect,tuple,perfect,tuple,perfect,tuple,perfect,tuple,perfect 807,543,807,543,807,543,807,543,807,543,807,543,807,543 37,37,37,37,37,37,37,37,37,37,37,37,37,37 114,114,114,114,114,114,114,114,114,114,114,114,114,114 NM_001098620,NM_001098620,NM_001128911,NM_001128911,NM_001128912,NM_001128912,NM_001128913,NM_001128913,NM_001128914,NM_001128914,NM_005016,NM_005016,NM_031989,NM_031989 82,82,82,82,82,82,82,82,82,82,82,82,82,82 6,6,6,6,6,6,6,6,6,6,6,6,6,6 blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat 244,244,244,244,244,244,244,244,244,244,244,244,244,244 996,996,1098,1098,1086,1086,1008,1008,957,957,1101,1101,1089,1089 38,38,38,38,38,38,38,38,38,38,38,38,38,38 115,115,115,115,115,115,115,115,115,115,115,115,115,115 SVYSDRLHFEALMNIPVLVLDVNDDFSEEVTKQEDLMREDISSSMTNS,SVYSDRLHFEALMNIPVLVLDVNDDFSEEVTKQEDLMREDISSSMTNS,SVYSDRLHFEALMNIPVLVLDVNDDFSEEVTKQEDLMREDISSSMTNS,SVYSDRLHFEALMNIPVLVLDVNDDFSEEVTKQEDLMREDISSSMTNS,SVYSDRLHFEALMNIPVLVLDVNDDFSEEVTKQEDLMREDISSSMTNS,SVYSDRLHFEALMNIPVLVLDVNDDFSEEVTKQEDLMREDISSSMTNS,SVYSDRLHFEALMNIPVLVLDVNDDFSEEVTKQEDLMREDISSSMTNS,SVYSDRLHFEALMNIPVLVLDVNDDFSEEVTKQEDLMREDISSSMTNS,SVYSDRLHFEALMNIPVLVLDVNDDFSEEVTKQEDLMREDISSSMTNS,SVYSDRLHFEALMNIPVLVLDVNDDFSEEVTKQEDLMREDISSSMTNS,SVYSDRLHFEALMNIPVLVLDVNDDFSEEVTKQEDLMREDISSSMTNS,SVYSDRLHFEALMNIPVLVLDVNDDFSEEVTKQEDLMREDISSSMTNS,SVYSDRLHFEALMNIPVLVLDVNDDFSEEVTKQEDLMREDISSSMTNS,SVYSDRLHFEALMNIPVLVLDVNDDFSEEVTKQEDLMREDISSSMTNS DGUOK:NM_080916[1,6]-PCBP2:NM_001098620[6,14];DGUOK:NM_080918[1,4]-PCBP2:NM_001098620[6,14];DGUOK:NM_080916[1,6]-PCBP2:NM_001128911[6,15];DGUOK:NM_080918[1,4]-PCBP2:NM_001128911[6,15];DGUOK:NM_080916[1,6]-PCBP2:NM_001128912[6,15];DGUOK:NM_080918[1,4]-PCBP2:NM_001128912[6,15];DGUOK:NM_080916[1,6]-PCBP2:NM_001128913[6,14];DGUOK:NM_080918[1,4]-PCBP2:NM_001128913[6,14];DGUOK:NM_080916[1,6]-PCBP2:NM_001128914[6,13];DGUOK:NM_080918[1,4]-PCBP2:NM_001128914[6,13];DGUOK:NM_080916[1,6]-PCBP2:NM_005016[6,15];DGUOK:NM_080918[1,4]-PCBP2:NM_005016[6,15];DGUOK:NM_080916[1,6]-PCBP2:NM_031989[6,15];DGUOK:NM_080918[1,4]-PCBP2:NM_031989[6,15] geneB_transcripts=NM_001098620,NM_001128911,NM_001128912,NM_001128913,NM_001128914,NM_005016,NM_031989;reannotated geneB from PCBP2,PCBP2-OT1 to PCBP2 ,,,,,,,,,,,,, 1,1,1,1,1,1,1,1,1,1,1,1,1,1 SJBALL020589_D1 IFITM3 chr11 320565 - coding SEC31A chr4 83740406 - coding > 0 2 33 90 0.854 0.032 0 44 0.001 0.027 34 35 CCTGGGCTTCATAGCATTCGCGTACTCCGTGAAGCTTTCACCAACAATCACCAGTGGTTTACACAACATTGCAAGGAGCATTGAAACTCGAAACTACTCAGAAGGATTGACCATGCATACCCACA CTX 0.00 LQ 2 Fusion 1,1,1,1,1,1,1,1 NM_021034,NM_021034,NM_021034,NM_021034,NM_021034,NM_021034,NM_021034,NM_021034 84,84,84,84,84,84,84,84 1,1,1,1,1,1,1,1 perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect 249,249,249,249,249,249,249,249 10,10,10,10,10,10,10,10 33,33,33,33,33,33,33,33 NM_001077206,NM_001077207,NM_001077208,NM_001191049,NM_001300744,NM_001300745,NM_014933,NM_016211 1048,1162,1147,1142,1009,1108,1162,1123 26,27,27,26,24,25,27,25 tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 3142,3484,3439,3424,3025,3322,3484,3367 3321,3663,3618,3603,3204,3501,3663,3546 11,11,11,11,11,11,11,11 34,34,34,34,34,34,34,34 LGFIAFAYSVKLSPTITSGLHNIARSIETRNYSEGLTMHTH,LGFIAFAYSVKLSPTITSGLHNIARSIETRNYSEGLTMHTH,LGFIAFAYSVKLSPTITSGLHNIARSIETRNYSEGLTMHTH,LGFIAFAYSVKLSPTITSGLHNIARSIETRNYSEGLTMHTH,LGFIAFAYSVKLSPTITSGLHNIARSIETRNYSEGLTMHTH,LGFIAFAYSVKLSPTITSGLHNIARSIETRNYSEGLTMHTH,LGFIAFAYSVKLSPTITSGLHNIARSIETRNYSEGLTMHTH,LGFIAFAYSVKLSPTITSGLHNIARSIETRNYSEGLTMHTH IFITM3:NM_021034[1,1]-SEC31A:NM_001077206[26,26];IFITM3:NM_021034[1,1]-SEC31A:NM_001077207[27,27];IFITM3:NM_021034[1,1]-SEC31A:NM_001077208[27,27];IFITM3:NM_021034[1,1]-SEC31A:NM_001191049[26,26];IFITM3:NM_021034[1,1]-SEC31A:NM_001300744[24,24];IFITM3:NM_021034[1,1]-SEC31A:NM_001300745[25,25];IFITM3:NM_021034[1,1]-SEC31A:NM_014933[27,27];IFITM3:NM_021034[1,1]-SEC31A:NM_016211[25,25] geneB_transcripts=NM_001077206,NM_001077207,NM_001077208,NM_001191049,NM_001300744,NM_001300745,NM_014933,NM_016211 ,,,,,,, 1,1,1,1,1,1,1,1 SJBALL020589_D1 NUP98 chr11 3774545 - coding ZCCHC7 chr9 37327793 + coding > 2 0 86 35 0.000 0.000 44 0 0.009 0.000 87 83 ACAAATACCAGTGGGAATAGTATTTTTGGAAGTAAACCAGCACCTGGGACTCTTGGAACTGGGCTTGGTGCAGGATTTGGAACAGGCTTGCACAGAAATCTGGAGGCAGTATCACCT CTX 0.00 LQ 3 Fusion 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 NM_005387,NM_016320,NM_139131,NM_139132,NM_005387,NM_016320,NM_139131,NM_139132,NM_005387,NM_016320,NM_139131,NM_139132,NM_005387,NM_016320,NM_139131,NM_139132,,,, ,,,,,,,,,,,,,,,,,,, 11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,,,, ,,,,,,,,,,,,,,,,,,, 1318,1267,1267,1267,1318,1267,1267,1267,1318,1267,1267,1267,1318,1267,1267,1267,,,, ,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,, NM_001289119,NM_001289119,NM_001289119,NM_001289119,NM_001289120,NM_001289120,NM_001289120,NM_001289120,NM_001289121,NM_001289121,NM_001289121,NM_001289121,NM_032226,NM_032226,NM_032226,NM_032226,NM_001289119,NM_001289120,NM_001289121,NM_032226 318,318,318,318,318,318,318,318,318,318,318,318,318,318,318,318,318,318,318,318 6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,,,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 952,952,952,952,952,952,952,952,952,952,952,952,952,952,952,952,952,952,952,952 1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632 28,28,28,28,28,28,28,28,28,28,28,28,28,28,28,28,,,, ,,,,,,,,,,,,,,,,,,, QIPVGIVFLEVNQHLGLLELGLVQDLEQACTEIWRQYH,QIPVGIVFLEVNQHLGLLELGLVQDLEQACTEIWRQYH,QIPVGIVFLEVNQHLGLLELGLVQDLEQACTEIWRQYH,QIPVGIVFLEVNQHLGLLELGLVQDLEQACTEIWRQYH,QIPVGIVFLEVNQHLGLLELGLVQDLEQACTEIWRQYH,QIPVGIVFLEVNQHLGLLELGLVQDLEQACTEIWRQYH,QIPVGIVFLEVNQHLGLLELGLVQDLEQACTEIWRQYH,QIPVGIVFLEVNQHLGLLELGLVQDLEQACTEIWRQYH,QIPVGIVFLEVNQHLGLLELGLVQDLEQACTEIWRQYH,QIPVGIVFLEVNQHLGLLELGLVQDLEQACTEIWRQYH,QIPVGIVFLEVNQHLGLLELGLVQDLEQACTEIWRQYH,QIPVGIVFLEVNQHLGLLELGLVQDLEQACTEIWRQYH,QIPVGIVFLEVNQHLGLLELGLVQDLEQACTEIWRQYH,QIPVGIVFLEVNQHLGLLELGLVQDLEQACTEIWRQYH,QIPVGIVFLEVNQHLGLLELGLVQDLEQACTEIWRQYH,QIPVGIVFLEVNQHLGLLELGLVQDLEQACTEIWRQYH,,,, NUP98:NM_005387[1,11]-ZCCHC7:NM_001289119[6,9];NUP98:NM_016320[1,11]-ZCCHC7:NM_001289119[6,9];NUP98:NM_139131[1,11]-ZCCHC7:NM_001289119[6,9];NUP98:NM_139132[1,11]-ZCCHC7:NM_001289119[6,9];NUP98:NM_005387[1,11]-ZCCHC7:NM_001289120[6,9];NUP98:NM_016320[1,11]-ZCCHC7:NM_001289120[6,9];NUP98:NM_139131[1,11]-ZCCHC7:NM_001289120[6,9];NUP98:NM_139132[1,11]-ZCCHC7:NM_001289120[6,9];NUP98:NM_005387[1,11]-ZCCHC7:NM_001289121[6,9];NUP98:NM_016320[1,11]-ZCCHC7:NM_001289121[6,9];NUP98:NM_139131[1,11]-ZCCHC7:NM_001289121[6,9];NUP98:NM_139132[1,11]-ZCCHC7:NM_001289121[6,9];NUP98:NM_005387[1,11]-ZCCHC7:NM_032226[6,9];NUP98:NM_016320[1,11]-ZCCHC7:NM_032226[6,9];NUP98:NM_139131[1,11]-ZCCHC7:NM_032226[6,9];NUP98:NM_139132[1,11]-ZCCHC7:NM_032226[6,9];;;; geneB_transcripts=NM_001289119,NM_001289120,NM_001289121,NM_032226 ,,,,,,,,,,,,,,,,,,, 1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,,,, SJBALL020589_D1 LOC101929760 chr22 31733799 + 5utr ATF1 chr12 51173921 + coding > 2 0 92 39 0.000 0.000 46 0 0.005 0.000 93 91 CTGAAGACCACCCCATTACCTTGTGCTAGAACGGAACTGCCTCTGCCATCTCTCTTTAACAGAAGCACATCCTGAGAACCTGAGAGCTCAAGTTGATTATGGAAGATTCCCACAAGAGTACCACGTCAG CTX 0.00 LQ 2 upTSS 0,0,0,2 NM_014323,NM_032050,NM_032052, ,,, 2,2,2, ,,, ,,, ,,, ,,, NM_005171,NM_005171,NM_005171,NM_005171 -1,-1,-1,-1 2,2,2, tuple,tuple,tuple,tuple ,,, 816,816,816,816 32,32,32, ,,, EDHPITLC*NGTASAISL*QKHILRT*ELKLIMEDSHKSTTS,EDHPITLC*NGTASAISL*QKHILRT*ELKLIMEDSHKSTTS,EDHPITLC*NGTASAISL*QKHILRT*ELKLIMEDSHKSTTS, PATZ1:NM_014323[1,2]-ATF1:NM_005171[2,7];PATZ1:NM_032050[1,2]-ATF1:NM_005171[2,7];PATZ1:NM_032052[1,2]-ATF1:NM_005171[2,7]; geneB_transcripts=NM_005171;geneb_utr_codons=2 ,,, 2,2,2, SJBALL020589_D1 CD74 chr5 149785884 + coding CD74 chr5 149792321 - coding ? 0 0 34 90 0.663 0.000 1 1 0.000 0.349 117 115 CCCCAGGGGCCCATGCAGAATGCCACCAAGTATGGCAACATGACAGTCAGCATTCTGGAGCAGGTGCATCACATGGTCCTCTGTCATGTTGCCATACTTGGTGGCATTCTGCATGGGTCCCAGATGCACAGGAGGAGAAGCAGGAGCTGTCGGGAAGATCAGAAGCCAGTCATGGATGACCAGCGCGACCTTATCTCCAACCATG Internal_inv 0.00 LQ 3 Fusion unhandled orientation ? SJBALL020589_D1 MALAT1 chr11 65272490 + 5utr SNX2 chr5 122143838 + intron > 0 1 34 117 0.000 0.000 0 49 0.044 0.004 52 50 TTAAAATACACTCAAAATTTGAATTCACCAGTGGACAAAATGAGGAAAACAGATAAGATACCAGTTACAAGTTTAGGGCTGTTAAGTTCAAATTTTGAGTGTATTTTAAATTATGAAGAAATGATTATGAAAGACTTTCACAGCAATATAAAGTCATCATGAATCTC CTX 0.00 LQ 3 other , , , , , , , , NM_001278199,NM_003100 , , , 293,644 1209,1560 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_001278199,NM_003100 , , SJBALL020589_D1 BANP chr16 88017866 + coding RNF111 chr15 59323002 + 5utr > 0 1 39 171 0.000 0.000 0 37 0.034 0.000 39 38 CCTCTCGGGGCAACCCAGACGTGCAACAAAGTGCGATGGCTTTCCTTAAAGTTTCCCATGTCTCAATGGACTCCTGAATATAAGGAGCTCTACACCTTAAAAGTGGATATGAAGAGTGAGATTCCTTCTGATGCACCAAAGACACAGGAGAGTCTGAAAGGGATCCTTTTGCATCCAGAGCCCATTGGGGCAGCCAAAAGTTTTCCTGC CTX 0.00 LQ 2 Fusion 1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1 NM_001173539,NM_001173540,NM_001173541,NM_001173542,NM_001173543,NM_017869,NM_079837,NM_001173539,NM_001173540,NM_001173541,NM_001173542,NM_001173543,NM_017869,NM_079837,NM_001173539,NM_001173540,NM_001173541,NM_001173542,NM_001173543,NM_017869,NM_079837,NM_001173539,NM_001173540,NM_001173541,NM_001173542,NM_001173543,NM_017869,NM_079837 121,127,121,121,113,121,121,121,127,121,121,113,121,121,121,127,121,121,113,121,121,121,127,121,121,113,121,121 4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4 tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 362,380,362,362,338,362,362,362,380,362,362,338,362,362,362,380,362,362,338,362,362,362,380,362,362,338,362,362 11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11 35,35,35,35,35,35,35,35,35,35,35,35,35,35,35,35,35,35,35,35,35,35,35,35,35,35,35,35 NM_001270528,NM_001270528,NM_001270528,NM_001270528,NM_001270528,NM_001270528,NM_001270528,NM_001270529,NM_001270529,NM_001270529,NM_001270529,NM_001270529,NM_001270529,NM_001270529,NM_001270530,NM_001270530,NM_001270530,NM_001270530,NM_001270530,NM_001270530,NM_001270530,NM_017610,NM_017610,NM_017610,NM_017610,NM_017610,NM_017610,NM_017610 -6,-6,-6,-6,-6,-6,-6,-6,-6,-6,-6,-6,-6,-6,-6,-6,-6,-6,-6,-6,-6,-6,-6,-6,-6,-6,-6,-6 2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2 tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple ,,,,,,,,,,,,,,,,,,,,,,,,,,, 2988,2988,2988,2988,2988,2988,2988,2958,2958,2958,2958,2958,2958,2958,2985,2985,2985,2985,2985,2985,2985,2961,2961,2961,2961,2961,2961,2961 15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15 45,45,45,45,45,45,45,45,45,45,45,45,45,45,45,45,45,45,45,45,45,45,45,45,45,45,45,45 PLGATQTCNKVRWLSLKFPMSQWTPEYKELYTLKVDMKSEIPSDAPKTQESLKGILLHPEPIGAAKSFP,PLGATQTCNKVRWLSLKFPMSQWTPEYKELYTLKVDMKSEIPSDAPKTQESLKGILLHPEPIGAAKSFP,PLGATQTCNKVRWLSLKFPMSQWTPEYKELYTLKVDMKSEIPSDAPKTQESLKGILLHPEPIGAAKSFP,PLGATQTCNKVRWLSLKFPMSQWTPEYKELYTLKVDMKSEIPSDAPKTQESLKGILLHPEPIGAAKSFP,PLGATQTCNKVRWLSLKFPMSQWTPEYKELYTLKVDMKSEIPSDAPKTQESLKGILLHPEPIGAAKSFP,PLGATQTCNKVRWLSLKFPMSQWTPEYKELYTLKVDMKSEIPSDAPKTQESLKGILLHPEPIGAAKSFP,PLGATQTCNKVRWLSLKFPMSQWTPEYKELYTLKVDMKSEIPSDAPKTQESLKGILLHPEPIGAAKSFP,PLGATQTCNKVRWLSLKFPMSQWTPEYKELYTLKVDMKSEIPSDAPKTQESLKGILLHPEPIGAAKSFP,PLGATQTCNKVRWLSLKFPMSQWTPEYKELYTLKVDMKSEIPSDAPKTQESLKGILLHPEPIGAAKSFP,PLGATQTCNKVRWLSLKFPMSQWTPEYKELYTLKVDMKSEIPSDAPKTQESLKGILLHPEPIGAAKSFP,PLGATQTCNKVRWLSLKFPMSQWTPEYKELYTLKVDMKSEIPSDAPKTQESLKGILLHPEPIGAAKSFP,PLGATQTCNKVRWLSLKFPMSQWTPEYKELYTLKVDMKSEIPSDAPKTQESLKGILLHPEPIGAAKSFP,PLGATQTCNKVRWLSLKFPMSQWTPEYKELYTLKVDMKSEIPSDAPKTQESLKGILLHPEPIGAAKSFP,PLGATQTCNKVRWLSLKFPMSQWTPEYKELYTLKVDMKSEIPSDAPKTQESLKGILLHPEPIGAAKSFP,PLGATQTCNKVRWLSLKFPMSQWTPEYKELYTLKVDMKSEIPSDAPKTQESLKGILLHPEPIGAAKSFP,PLGATQTCNKVRWLSLKFPMSQWTPEYKELYTLKVDMKSEIPSDAPKTQESLKGILLHPEPIGAAKSFP,PLGATQTCNKVRWLSLKFPMSQWTPEYKELYTLKVDMKSEIPSDAPKTQESLKGILLHPEPIGAAKSFP,PLGATQTCNKVRWLSLKFPMSQWTPEYKELYTLKVDMKSEIPSDAPKTQESLKGILLHPEPIGAAKSFP,PLGATQTCNKVRWLSLKFPMSQWTPEYKELYTLKVDMKSEIPSDAPKTQESLKGILLHPEPIGAAKSFP,PLGATQTCNKVRWLSLKFPMSQWTPEYKELYTLKVDMKSEIPSDAPKTQESLKGILLHPEPIGAAKSFP,PLGATQTCNKVRWLSLKFPMSQWTPEYKELYTLKVDMKSEIPSDAPKTQESLKGILLHPEPIGAAKSFP,PLGATQTCNKVRWLSLKFPMSQWTPEYKELYTLKVDMKSEIPSDAPKTQESLKGILLHPEPIGAAKSFP,PLGATQTCNKVRWLSLKFPMSQWTPEYKELYTLKVDMKSEIPSDAPKTQESLKGILLHPEPIGAAKSFP,PLGATQTCNKVRWLSLKFPMSQWTPEYKELYTLKVDMKSEIPSDAPKTQESLKGILLHPEPIGAAKSFP,PLGATQTCNKVRWLSLKFPMSQWTPEYKELYTLKVDMKSEIPSDAPKTQESLKGILLHPEPIGAAKSFP,PLGATQTCNKVRWLSLKFPMSQWTPEYKELYTLKVDMKSEIPSDAPKTQESLKGILLHPEPIGAAKSFP,PLGATQTCNKVRWLSLKFPMSQWTPEYKELYTLKVDMKSEIPSDAPKTQESLKGILLHPEPIGAAKSFP,PLGATQTCNKVRWLSLKFPMSQWTPEYKELYTLKVDMKSEIPSDAPKTQESLKGILLHPEPIGAAKSFP BANP:NM_001173539[1,4]-RNF111:NM_001270528[2,14];BANP:NM_001173540[1,4]-RNF111:NM_001270528[2,14];BANP:NM_001173541[1,4]-RNF111:NM_001270528[2,14];BANP:NM_001173542[1,4]-RNF111:NM_001270528[2,14];BANP:NM_001173543[1,4]-RNF111:NM_001270528[2,14];BANP:NM_017869[1,4]-RNF111:NM_001270528[2,14];BANP:NM_079837[1,4]-RNF111:NM_001270528[2,14];BANP:NM_001173539[1,4]-RNF111:NM_001270529[2,14];BANP:NM_001173540[1,4]-RNF111:NM_001270529[2,14];BANP:NM_001173541[1,4]-RNF111:NM_001270529[2,14];BANP:NM_001173542[1,4]-RNF111:NM_001270529[2,14];BANP:NM_001173543[1,4]-RNF111:NM_001270529[2,14];BANP:NM_017869[1,4]-RNF111:NM_001270529[2,14];BANP:NM_079837[1,4]-RNF111:NM_001270529[2,14];BANP:NM_001173539[1,4]-RNF111:NM_001270530[2,14];BANP:NM_001173540[1,4]-RNF111:NM_001270530[2,14];BANP:NM_001173541[1,4]-RNF111:NM_001270530[2,14];BANP:NM_001173542[1,4]-RNF111:NM_001270530[2,14];BANP:NM_001173543[1,4]-RNF111:NM_001270530[2,14];BANP:NM_017869[1,4]-RNF111:NM_001270530[2,14];BANP:NM_079837[1,4]-RNF111:NM_001270530[2,14];BANP:NM_001173539[1,4]-RNF111:NM_017610[2,14];BANP:NM_001173540[1,4]-RNF111:NM_017610[2,14];BANP:NM_001173541[1,4]-RNF111:NM_017610[2,14];BANP:NM_001173542[1,4]-RNF111:NM_017610[2,14];BANP:NM_001173543[1,4]-RNF111:NM_017610[2,14];BANP:NM_017869[1,4]-RNF111:NM_017610[2,14];BANP:NM_079837[1,4]-RNF111:NM_017610[2,14] geneB_transcripts=NM_001270528,NM_001270529,NM_001270530,NM_017610;geneb_utr_codons=7 WLS,WLS,WLS,WLS,WLS,WLS,WLS,WLS,WLS,WLS,WLS,WLS,WLS,WLS,WLS,WLS,WLS,WLS,WLS,WLS,WLS,WLS,WLS,WLS,WLS,WLS,WLS,WLS 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 SJBALL020589_D1 RLF chr1 40598574 + intergenic TCF3 chr19 1632406 - coding > 0 4 58 76 0.550 0.522 1 167 0.000 0.000 63 67 CACCATCCACGCCAGCCGCACCATGCCGCTCCTAAGCCTGCACAGCCGCGGCGGCAGCAGCAGTGAGAGGTCTTGAGGACCGGCCCAGCTCAGGCTCCTGGGGCAGCGGCGACCAGAGCAGCTCCTCCTTTGACCCCAGCCGGACCTTCAGCGACG CTX 0.00 LQ 3 NLoss 0,0 , , , , , , , NM_001136139,NM_003200 49,49 , tuple,tuple 146,146 1956,1965 , , , ; geneA_no_transcript_IDs_found geneB_transcripts=NM_001136139,NM_003200 , , SJBALL020589_D1 SORL1 chr11 121323336 + intron DYRK1A chr21 38877769 + coding > 0 1 45 143 0.000 0.000 0 35 0.018 0.000 47 36 GCTGCCCTGCAGCCCGAGCCCATCAAGGTGTACGGACAGCACAGTTTCTTCAAGAAAACAGCTGATGAAGGTACAAATACAAGTAATAGTGTATCTACAAGCCCCGCCATGGAGCAGTCTCAGTCTTCGGGCACCACCTCCAGTACATCGTCAAGCTCAGGTGGCTCATCGGGGACAAG CTX 0.00 LQ 2 Fusion 1,1,1,1 NM_003105,NM_003105,NM_003105,NM_003105 95,95,95,95 1,1,1,1 perfect,perfect,perfect,perfect ,,, 11,11,11,11 35,35,35,35 NM_001396,NM_101395,NM_130436,NM_130438 475,475,466,475 9,11,9,9 tuple,tuple,tuple,tuple 1423,1423,1396,1423 2292,1755,2265,1590 12,12,12,12 36,36,36,36 AALQPEPIKVYGQHSFFKKTADEGTNTSNSVSTSPAMEQSQSSGTTSSTSSSSGGSSGT,AALQPEPIKVYGQHSFFKKTADEGTNTSNSVSTSPAMEQSQSSGTTSSTSSSSGGSSGT,AALQPEPIKVYGQHSFFKKTADEGTNTSNSVSTSPAMEQSQSSGTTSSTSSSSGGSSGT,AALQPEPIKVYGQHSFFKKTADEGTNTSNSVSTSPAMEQSQSSGTTSSTSSSSGGSSGT SORL1:NM_003105[1,1]-DYRK1A:NM_001396[9,11];SORL1:NM_003105[1,1]-DYRK1A:NM_101395[11,13];SORL1:NM_003105[1,1]-DYRK1A:NM_130436[9,11];SORL1:NM_003105[1,1]-DYRK1A:NM_130438[9,10] geneB_transcripts=NM_001396,NM_101395,NM_130436,NM_130438 ,,, 0,0,0,0 SJBALL020589_D1 FERMT2 chr14 53417130 - coding WDR43 chr2 29164326 + coding > 0 2 51 85 0.000 0.000 1 64 0.000 0.000 51 50 CCGGCGAGGTGCACATTGGAGGCGTGATGCTTAAGCTGGTGGAGAAACTCGTTGCCTGACCTGGTACCCCAGCTGGGGACACTCTACCAGTTAATGGAAAGCAGAGTCAAAACTTTTCAGAAACTTTCACACCTT CTX 0.00 LQ 3 Fusion 0,0,0,3 NM_001134999,NM_001135000,NM_006832, ,,, 2,2,2, ,,, 157,157,157, ,,, ,,, NM_015131,NM_015131,NM_015131,NM_015131 541,541,541,541 15,15,15, tuple,tuple,tuple,tuple 1621,1621,1621,1621 2034,2034,2034,2034 17,17,17, ,,, PARCTLEA*CLSWWRNSLPDLVPQLGTLYQLMESRVKTFQKLSHL,PARCTLEA*CLSWWRNSLPDLVPQLGTLYQLMESRVKTFQKLSHL,PARCTLEA*CLSWWRNSLPDLVPQLGTLYQLMESRVKTFQKLSHL, FERMT2:NM_001134999[1,2]-WDR43:NM_015131[15,18];FERMT2:NM_001135000[1,2]-WDR43:NM_015131[15,18];FERMT2:NM_006832[1,2]-WDR43:NM_015131[15,18]; geneB_transcripts=NM_015131 ,,, 0,0,0, SJBALL020589_D1 LATS2 chr13 21619824 - coding TOP2B chr3 25686949 - coding > 0 1 164 50 0.000 0.000 0 51 0.053 0.000 164 161 AGCAGCAGCAGATGAGAGCCACCCCAAAGTTCGGACCTTATCAGAAAGCCTTGAGGGAAATCAGATATTCCTTGTTGCCTTTTGCTAATGAATCGGGCACCTCTGCAGCTGCAGAAGTGAACCGGCAAATGCTGCAGGAACTGGTGAACGCAGGATGCGACCAGAACAATGCTGCAAAAAAAGAAGAGTCAGAAACTGCCAACAAAAATGA CTX 0.00 LQ 2 Fusion 1 NM_014572 115 2 perfect 342 53 163 NM_001068 24 2 tuple 70 4866 54 164 QQQMRATPKFGPYQKALREIRYSLLPFANESGTSAAAEVNRQMLQELVNAGCDQNNAAKKEESETANKN LATS2:NM_014572[1,2]-TOP2B:NM_001068[2,36] geneB_transcripts=NM_001068 2 SJBALL020589_D1 GYPC chr2 127413888 + coding IKZF1 chr7 50358643 + 5utr > 0 1 144 93 0.000 0.000 0 53 0.006 0.000 144 143 CGAGGGTCAGGAGCCCGGGAGCGCGACCCTCCCCCGGCCCGGCCTGGCCCGGCCTGGCCAGTCCCCGCGGTCTCTGCCCGGGCTGACGCCCAGGAATGTGGTCGACGAGAAGCCCCAACAGCACGGCGTGGCCTCTCAGCCTCGATAACCTGAGGACCATGGATGCTGATGAGGGTCAAGACATGTCCCAAGTTTCAGCATGCACTGAGCGGAAAGTACGACATTTCTTCATTGGGCCGGGCGC CTX 0.00 LQ 2 Fusion 0,1,1,0,1,1,0,1,1,0,1,1,0,1,1,0,1,1,0,1,1,0,1,1 NM_001256584,NM_002101,NM_016815,NM_001256584,NM_002101,NM_016815,NM_001256584,NM_002101,NM_016815,NM_001256584,NM_002101,NM_016815,NM_001256584,NM_002101,NM_016815,NM_001256584,NM_002101,NM_016815,NM_001256584,NM_002101,NM_016815,NM_001256584,NM_002101,NM_016815 ,17,17,,17,17,,17,17,,17,17,,17,17,,17,17,,17,17,,17,17 1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1 ,tuple,tuple,,tuple,tuple,,tuple,tuple,,tuple,tuple,,tuple,tuple,,tuple,tuple,,tuple,tuple,,tuple,tuple ,49,49,,49,49,,49,49,,49,49,,49,49,,49,49,,49,49,,49,49 ,46,46,,46,46,,46,46,,46,46,,46,46,,46,46,,46,46,,46,46 ,142,142,,142,142,,142,142,,142,142,,142,142,,142,142,,142,142,,142,142 NM_001220765,NM_001220765,NM_001220765,NM_001291837,NM_001291837,NM_001291837,NM_001291838,NM_001291838,NM_001291838,NM_001291839,NM_001291839,NM_001291839,NM_001291845,NM_001291845,NM_001291845,NM_001291846,NM_001291846,NM_001291846,NM_001291847,NM_001291847,NM_001291847,NM_006060,NM_006060,NM_006060 -4,-4,-4,-4,-4,-4,-4,-4,-4,-4,-4,-4,-4,-4,-4,-4,-4,-4,-4,-4,-4,-4,-4,-4 2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2 tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple ,,,,,,,,,,,,,,,,,,,,,,, 1434,1434,1434,1434,1434,1434,1299,1299,1299,1173,1173,1173,525,525,525,234,234,234,234,234,234,1560,1560,1560 50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50 ,152,152,,152,152,,152,152,,152,152,,152,152,,152,152,,152,152,,152,152 RVRSPGARPSPGPAWPGLASPRGLCPG*RPGMWSTRSPNSTAWPLSLDNLRTMDADEGQDMSQVSACTERKVRHFFIGPG,RVRSPGARPSPGPAWPGLASPRGLCPG*RPGMWSTRSPNSTAWPLSLDNLRTMDADEGQDMSQVSACTERKVRHFFIGPG,RVRSPGARPSPGPAWPGLASPRGLCPG*RPGMWSTRSPNSTAWPLSLDNLRTMDADEGQDMSQVSACTERKVRHFFIGPG,RVRSPGARPSPGPAWPGLASPRGLCPG*RPGMWSTRSPNSTAWPLSLDNLRTMDADEGQDMSQVSACTERKVRHFFIGPG,RVRSPGARPSPGPAWPGLASPRGLCPG*RPGMWSTRSPNSTAWPLSLDNLRTMDADEGQDMSQVSACTERKVRHFFIGPG,RVRSPGARPSPGPAWPGLASPRGLCPG*RPGMWSTRSPNSTAWPLSLDNLRTMDADEGQDMSQVSACTERKVRHFFIGPG,RVRSPGARPSPGPAWPGLASPRGLCPG*RPGMWSTRSPNSTAWPLSLDNLRTMDADEGQDMSQVSACTERKVRHFFIGPG,RVRSPGARPSPGPAWPGLASPRGLCPG*RPGMWSTRSPNSTAWPLSLDNLRTMDADEGQDMSQVSACTERKVRHFFIGPG,RVRSPGARPSPGPAWPGLASPRGLCPG*RPGMWSTRSPNSTAWPLSLDNLRTMDADEGQDMSQVSACTERKVRHFFIGPG,RVRSPGARPSPGPAWPGLASPRGLCPG*RPGMWSTRSPNSTAWPLSLDNLRTMDADEGQDMSQVSACTERKVRHFFIGPG,RVRSPGARPSPGPAWPGLASPRGLCPG*RPGMWSTRSPNSTAWPLSLDNLRTMDADEGQDMSQVSACTERKVRHFFIGPG,RVRSPGARPSPGPAWPGLASPRGLCPG*RPGMWSTRSPNSTAWPLSLDNLRTMDADEGQDMSQVSACTERKVRHFFIGPG,RVRSPGARPSPGPAWPGLASPRGLCPG*RPGMWSTRSPNSTAWPLSLDNLRTMDADEGQDMSQVSACTERKVRHFFIGPG,RVRSPGARPSPGPAWPGLASPRGLCPG*RPGMWSTRSPNSTAWPLSLDNLRTMDADEGQDMSQVSACTERKVRHFFIGPG,RVRSPGARPSPGPAWPGLASPRGLCPG*RPGMWSTRSPNSTAWPLSLDNLRTMDADEGQDMSQVSACTERKVRHFFIGPG,RVRSPGARPSPGPAWPGLASPRGLCPG*RPGMWSTRSPNSTAWPLSLDNLRTMDADEGQDMSQVSACTERKVRHFFIGPG,RVRSPGARPSPGPAWPGLASPRGLCPG*RPGMWSTRSPNSTAWPLSLDNLRTMDADEGQDMSQVSACTERKVRHFFIGPG,RVRSPGARPSPGPAWPGLASPRGLCPG*RPGMWSTRSPNSTAWPLSLDNLRTMDADEGQDMSQVSACTERKVRHFFIGPG,RVRSPGARPSPGPAWPGLASPRGLCPG*RPGMWSTRSPNSTAWPLSLDNLRTMDADEGQDMSQVSACTERKVRHFFIGPG,RVRSPGARPSPGPAWPGLASPRGLCPG*RPGMWSTRSPNSTAWPLSLDNLRTMDADEGQDMSQVSACTERKVRHFFIGPG,RVRSPGARPSPGPAWPGLASPRGLCPG*RPGMWSTRSPNSTAWPLSLDNLRTMDADEGQDMSQVSACTERKVRHFFIGPG,RVRSPGARPSPGPAWPGLASPRGLCPG*RPGMWSTRSPNSTAWPLSLDNLRTMDADEGQDMSQVSACTERKVRHFFIGPG,RVRSPGARPSPGPAWPGLASPRGLCPG*RPGMWSTRSPNSTAWPLSLDNLRTMDADEGQDMSQVSACTERKVRHFFIGPG,RVRSPGARPSPGPAWPGLASPRGLCPG*RPGMWSTRSPNSTAWPLSLDNLRTMDADEGQDMSQVSACTERKVRHFFIGPG GYPC:NM_001256584[1,1]-IKZF1:NM_001220765[2,7];GYPC:NM_002101[1,1]-IKZF1:NM_001220765[2,7];GYPC:NM_016815[1,1]-IKZF1:NM_001220765[2,7];GYPC:NM_001256584[1,1]-IKZF1:NM_001291837[2,7];GYPC:NM_002101[1,1]-IKZF1:NM_001291837[2,7];GYPC:NM_016815[1,1]-IKZF1:NM_001291837[2,7];GYPC:NM_001256584[1,1]-IKZF1:NM_001291838[2,7];GYPC:NM_002101[1,1]-IKZF1:NM_001291838[2,7];GYPC:NM_016815[1,1]-IKZF1:NM_001291838[2,7];GYPC:NM_001256584[1,1]-IKZF1:NM_001291839[2,6];GYPC:NM_002101[1,1]-IKZF1:NM_001291839[2,6];GYPC:NM_016815[1,1]-IKZF1:NM_001291839[2,6];GYPC:NM_001256584[1,1]-IKZF1:NM_001291845[2,4];GYPC:NM_002101[1,1]-IKZF1:NM_001291845[2,4];GYPC:NM_016815[1,1]-IKZF1:NM_001291845[2,4];GYPC:NM_001256584[1,1]-IKZF1:NM_001291846[2,5];GYPC:NM_002101[1,1]-IKZF1:NM_001291846[2,5];GYPC:NM_016815[1,1]-IKZF1:NM_001291846[2,5];GYPC:NM_001256584[1,1]-IKZF1:NM_001291847[2,5];GYPC:NM_002101[1,1]-IKZF1:NM_001291847[2,5];GYPC:NM_016815[1,1]-IKZF1:NM_001291847[2,5];GYPC:NM_001256584[1,1]-IKZF1:NM_006060[2,8];GYPC:NM_002101[1,1]-IKZF1:NM_006060[2,8];GYPC:NM_016815[1,1]-IKZF1:NM_006060[2,8] geneB_transcripts=NM_001220765,NM_001291837,NM_001291838,NM_001291839,NM_001291845,NM_001291846,NM_001291847,NM_006060;geneb_utr_codons=5 ,DNL,DNL,,DNL,DNL,,DNL,DNL,,DNL,DNL,,DNL,DNL,,DNL,DNL,,DNL,DNL,,DNL,DNL 2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2 SJBALL020589_D1 CD74 chr5 149786760 - coding CD74 chr5 149792329 - 5utr > 14 270 81 104 0.545 0.000 868 19833 0.000 0.000 177 180 ATGGGCAGTTGCTCATTGTTGGAGATAAGGTCGCGCTGGTCATCCATGACTGGCTTCTGATCTTCCCGACAGCTCCTGCTTCTCCTCCTGTGCATCTCTGCTCCTCGCTGGCCAGGCCACCACCGCCTACTTCCTGTACCAGCAGCAGGGCCGGCTGGACAAACTGACAGTCACCTTCAGGGGGTCAGCATTCTGGAGCAGGTGCATCACATGGTCCCAGATGCACAGGAGGAGAAGCAGGAGCTGTCGGGAAGATCAGAAGCCAGTCATGGATGACCAGCGCGACCTTATCTCCAACAATGAGCAA Internal_dup 0.00 LQ 2 ITD 1,1,1,1,1,1,1,1,1 NM_001025158,NM_001025159,NM_004355,NM_001025158,NM_001025159,NM_004355,NM_001025158,NM_001025159,NM_004355 85,85,85,85,85,85,85,85,85 2,2,2,2,2,2,2,2,2 tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 253,253,253,253,253,253,253,253,253 57,57,57,57,57,57,57,57,57 174,174,174,174,174,174,174,174,174 NM_001025158,NM_001025158,NM_001025158,NM_001025159,NM_001025159,NM_001025159,NM_004355,NM_004355,NM_004355 -5,-5,-5,-5,-5,-5,-5,-5,-5 1,1,1,1,1,1,1,1,1 blat,blat,blat,blat,blat,blat,blat,blat,blat ,,,,,,,, 483,483,483,891,891,891,699,699,699 73,73,73,73,73,73,73,73,73 220,220,220,220,220,220,220,220,220 WAVAHCWR*GRAGHP*LASDLPDSSCFSSCASLLLAGQATTAYFLYQQQGRLDKLTVTFRGSAFWSRCITWSQMHRRRSRSCREDQKPVMDDQRDLISNNEQ,WAVAHCWR*GRAGHP*LASDLPDSSCFSSCASLLLAGQATTAYFLYQQQGRLDKLTVTFRGSAFWSRCITWSQMHRRRSRSCREDQKPVMDDQRDLISNNEQ,WAVAHCWR*GRAGHP*LASDLPDSSCFSSCASLLLAGQATTAYFLYQQQGRLDKLTVTFRGSAFWSRCITWSQMHRRRSRSCREDQKPVMDDQRDLISNNEQ,WAVAHCWR*GRAGHP*LASDLPDSSCFSSCASLLLAGQATTAYFLYQQQGRLDKLTVTFRGSAFWSRCITWSQMHRRRSRSCREDQKPVMDDQRDLISNNEQ,WAVAHCWR*GRAGHP*LASDLPDSSCFSSCASLLLAGQATTAYFLYQQQGRLDKLTVTFRGSAFWSRCITWSQMHRRRSRSCREDQKPVMDDQRDLISNNEQ,WAVAHCWR*GRAGHP*LASDLPDSSCFSSCASLLLAGQATTAYFLYQQQGRLDKLTVTFRGSAFWSRCITWSQMHRRRSRSCREDQKPVMDDQRDLISNNEQ,WAVAHCWR*GRAGHP*LASDLPDSSCFSSCASLLLAGQATTAYFLYQQQGRLDKLTVTFRGSAFWSRCITWSQMHRRRSRSCREDQKPVMDDQRDLISNNEQ,WAVAHCWR*GRAGHP*LASDLPDSSCFSSCASLLLAGQATTAYFLYQQQGRLDKLTVTFRGSAFWSRCITWSQMHRRRSRSCREDQKPVMDDQRDLISNNEQ,WAVAHCWR*GRAGHP*LASDLPDSSCFSSCASLLLAGQATTAYFLYQQQGRLDKLTVTFRGSAFWSRCITWSQMHRRRSRSCREDQKPVMDDQRDLISNNEQ CD74:NM_001025158[1,2]-CD74:NM_001025158[1,6];CD74:NM_001025159[1,2]-CD74:NM_001025158[1,6];CD74:NM_004355[1,2]-CD74:NM_001025158[1,6];CD74:NM_001025158[1,2]-CD74:NM_001025159[1,9];CD74:NM_001025159[1,2]-CD74:NM_001025159[1,9];CD74:NM_004355[1,2]-CD74:NM_001025159[1,9];CD74:NM_001025158[1,2]-CD74:NM_004355[1,8];CD74:NM_001025159[1,2]-CD74:NM_004355[1,8];CD74:NM_004355[1,2]-CD74:NM_004355[1,8] geneB_transcripts=NM_001025158,NM_001025159,NM_004355;geneb_utr_codons=6 FRGSAFWSRCITWSQ,FRGSAFWSRCITWSQ,FRGSAFWSRCITWSQ,FRGSAFWSRCITWSQ,FRGSAFWSRCITWSQ,FRGSAFWSRCITWSQ,FRGSAFWSRCITWSQ,FRGSAFWSRCITWSQ,FRGSAFWSRCITWSQ 1,1,1,1,1,1,1,1,1 SJBALL020589_D1 TNFRSF14 chr1 2492154 + coding LOC100996583 chr1 2508457 + intron > 7 7 204 177 0.000 0.000 269 438 0.006 0.214 204 204 GCCGTGTGTGGCTGCAGCCCAGGCCACTTCTGCATCGTCCAGGACGGGGACCACTGCGCCGCGTGCCGCGCTTACGCCACCTCCAGCCCGGGCCAGAGGGTGCAGAAGGGAGGCACCGAGAGTCAGGACACCCTGTGTCAGAACTGCCCCCCGGGGACCTTCTCTCCCAATGGGACCCTGGAGGAATGTCAGCACCAGACCAAGGAAGAAAGCACGCAGCCAAAGAGCGCAAAGAGGCTCAGAGGAGGCCCGGGTGCCCTGGAGAGACGCTGCGTCCTGACGACACAGCATCCCTGTCCCGCAGCGGAGATTTCCCAGATGAAGGATTCCCCGGCGGGAGACAGGGCCCTGCACACAGGTCCTCTGCCATGCTGCTCACC read_through 43.81 RT 0 CLoss , NM_001297605,NM_003820 , , , 551,551 , , , , , , , , , , , ; geneB_no_transcripts , , SJBALL020589_D1 LOC101927190 chr5 115735179 - intergenic COMMD10 chr5 115639381 - intergenic ? 12 0 130 87 0.000 0.000 666 0 0.111 0.000 130 130 GAAGAGGAGCTTCCAAAAAGGGAGCTGAAGAAGATGATCAGAGAGGTGGTGTGAGAGGCACCCATACAGAACAGGTGTTTTCCTCGCCTCTGCAAACTCCATCTTGTCCATTACCCTGAATGGAGTGTCAAGTAGAAAATCCCAGGGTTCTGTCTTGGAATCTTGAGCACTGCTCTCTGAGATCTGGAGTCTCTCTCTGTGTGAAGGTTAAGCTCC read_through 33.30 RT 0 other unhandled orientation ? SJBALL020589_D1 NA chr5 157336959 + intergenic NA chr5 157409256 + intergenic ? 0 10 55 95 0.000 0.000 0 244 0.000 0.100 55 55 TCGTGCTGCCTTGTGAAGAAGATGCCTGCTTCTCTTTTGCCTTCTGCACTGACTCCCTGGAGTCCACCATTCTCCAAAGAGCCTTGATAGAATGGAGGCTTCTCAAAAAATGAAAAGTAGAACTTCCATATGATCCAGCAATTCCACCT read_through 12.20 RT 0 other unhandled orientation ? SJBALL270_D CRLF2 chrX 1337240 + intergenic IGH chr14 106330467 - 5utr > 142 200 374 270 0.000 0.000 4068 4658 0.269 0.411 374 397 CTCACGTCTATAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCACAAGGTCAGGAGTTTGAAACCAGCCTGGTCAATGTGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTACCTTGGTGTGGTGGTGCATGCCTGTAATCCCAGCTACTTGGGAGGCTGAGACAAGAGAATTGCTTGAACCCAGTAGGTGGAGGTTGCAGTGAGCCAAGATCGTGCCACTGCACTCCAGTCTAGGTGACAGAATGAGACTCTATCTCACAAAAAAGAAAAAAAAAGAGAGAGAAAAAAGGAAAGGAAAAGGGAATTGGAGGGGGAGGAAGGGCAGAGGCAGAACTGCTGATTTCTGTGGTCAGGAAGGTTTTCGGAACAACTCCGGTCACCTTCCTTTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGTGAGTCCTCACAACCTCTCTCCTGCTTTAACTCTGAAGGGTTTTGCTGCATTTTTGGGGGGAAATAAGGGTGCTGGGTCTCCTGCCAAGAGAGCCCCGGAGCAGCCTGGGGGGCTCAGGAGGATGCCCTGAGGCAACAGCGGCCACACAGACGAGGGGCAAGGGCTCCAGATGCTCCTTCCTCCTGAGCCCAGCAGCACGGGTCTCTCTGTGGCCAGGGCCACCCTAG CTX 8726.00 HQ 4 other 0,0 NM_001012288,NM_022148 , , , , , , , , , , , , , , , ; geneB_no_transcripts , , SJBALL270_D ZNF608 chr5 124079780 - coding NA chr5 124229020 + intergenic > 17 31 213 237 0.018 0.000 593 1046 0.167 0.567 213 213 CCGGGGGGCACCTCTATGGCTTTGGGGCCAAGAGCAATGGAGGTGGCGCGAGCCCCTTCCACTGCGGGGGCACTGGGAGTGGCAGCGTCGCCGCTGCAGGGGAAGTTAGCAAAAGTGCCCCGGATTCAGGGCTCATGGGAAACTCTATGTTGGTAAAGAAGGAAGAGGAGGAGGAGGAGAGCCACAGGCGAATCAAGAAACTGAAAACTGAGAAGGTCCGCGCTGCGTTTATGAGCTGTAACACGCACCACCGAGAAGGTCTGCAGCTTCACTGCAGAAGCCAGTGAGACCACAAACCTACCGAAAGTAAGAAACTCTGGACACATGTGAACATCTGAGGGAACAAACTCCGGACACACCATCTTTCAGAACTGTAACACTCACCGCGAGCGTCGGCGGCTTGGTTCTTGAAGTCAGCGAGACCAAGAACCCACCAATTCCGAACACTCTATGGCGTCTCGCTCTGTCGCCCAGGCTGGAGTGCA ITX 1619.72 HQ 0 CLoss NM_020747 903 geneB_no_transcripts SJBALL270_D IGH chr14 106322320 + 5utr CRLF2 chrX 1334351 - intergenic > 64 19 388 249 0.008 0.000 2160 734 0.047 0.022 389 387 CTTGGACTTGCGGGGGTTGCCGAAGAAGCCGTCGCGGGGTGGGACGAAGACGCTCACTTTGGGAGGCAGCTCAGCAATCACTGGAAGAGGCACGTTCTTTTCTTTGTTGCCGTTGGGGTGCTGGACTTTGCACACCACGTGTTCGTCTGTGCCCTGCATGACGTCCTTGGAAGGCAGCAGCACCTGTGAGGTGGCTGCGTACTTGCCCCCTCTCAGGACTGATGGGAAGCCCCGGGTGCTGCTGATGTCAGAGTTGTTCTTGTATTTCCAGGAGAAAGTGATGGAGTCGGGAAGGAAGTCCTGTGCGAGGCAGCCAACGGCCACGCTGCTCGTATCCGACGGGGAATTCTCACAGGAGACGAGGGGGAAAAGGGTTGGGGCGGATGCACTCCGGTTAATCCAATCTTCCTGCTGTCAAGCAAAAGAACACCTAAAATTCTTCCGTCACGTACTGGAGAAAGATCCTGCATTTGTGCTCTGAAAGTCCCCAAACCGCATCTCTAAACAGTTCCCACAATCACTTCTGCTTTGCTTGTACGAAGGAGTGGTGGCAACCAACAGGAATCACCTGCTCTGCCTGGCACACTTGTGTTTTGACCGCAAGGAATCTCCAGGCATGAGCCGAGATCTTTTAA CTX 823.96 HQ 4 other 0,0 , , , , , , , NM_001012288,NM_022148 , , , , , , , , ; geneB_no_transcripts , , SJBALL270_D ZNF608 chr5 124078894 - intron NA chr5 124224107 + intergenic > 4 11 245 262 0.000 0.000 269 540 0.026 0.250 246 261 CTGCAGAAAAACTCGATGGTTTTGGTGGCTGTTAGCACTCTACCCCTGTTCCCTCACCCAGTTCTTAGCTAGAGATTTAAGAGTGTTATCACTTGGATACCTGACTGGGGAGCTGGACGGCTGCTAAGAAGAATAAAACAGACTTGCTGGACTGATACTCGTGAAATGTGAAAATGTAGCCAAAGGGGATGTAGACGGTTGAGTGAATTGGAATATAGAATTATGTGCTGCATTTAAACGGTGTGAACAAACCGCCCCTCGCAAGCCCAGATTCTGAGCAAGTTCTCTTTGAAAGGCAAGCAGCTGTGTAATCATTTATCTAGTCTTAGTAGGAAATGGCTTATTTTACACAATTTTCTCAAAAGCAAATTTGAAATCCTCATTGTAATGTGACACCTTCTCTATCCTCAAAGTGCAATGAGGAAGAGAAAATTTAATATAGGAGTCAGCTTTCCCCTCTTATCCTTCACTAACAGCAGCATACTTATTTGATATATAAAAATAATAAAGGTGAAAATTTTGG ITX 579.24 HQ 0 other NM_020747 906 geneB_no_transcripts SJBALL270_D NA chr5 157897982 - intergenic LOC101927697 chr5 157796619 - 3utr > 38 21 192 97 0.000 0.000 1799 2121 0.070 0.166 192 192 CAGCCGCCTTCCAATCTGCGGAAATCCAACTTCTTCCACTTCGTCCTGGCCCTCTACGACAGACAGGGCCAGCCCGTGGAGATCGAGAGGACAGCGTTTGTGGGGTTCGTGGAGAAGGAAAAAGGTCTTCCTTGGATGCCTTTGAATTGTGCCCTCTACCAAATACCCTCCCACCTTGTAGACAGAGACATGGAGGGAAAATAGAGAAGAGTAAGAAAAAGTGATGGAGGAAGGAAGAGGAAAAGAAGCAAGGATCCAAAATGCAAATGTGGGACATTTTAGAAGAGC DEL 299.78 HQ 0 other geneB_no_transcripts SJBALL270_D SSBP2 chr5 81046801 - coding CHD1 chr5 98262238 - 5utr > 0 13 56 64 0.034 0.000 0 271 0.000 0.136 56 56 GGCAAAGGCAAGAGTAACAGCAGCGCCGTCCCGTCCGACAGCCAGGCCCGGGAGAAGTGAATCAAAGGAGAGTCCCAGAAAACCTGTGACTGTTGAAGAAAATTCATCTGTGAATTTTTA INS 261.66 HQ 3 CLoss ,,,,, NM_001256732,NM_001256733,NM_001256734,NM_001256735,NM_001256736,NM_012446 ,,,,, ,,,,, ,,,,, 61,61,61,61,61,61 ,,,,, ,,,,, NM_001270,NM_001270,NM_001270,NM_001270,NM_001270,NM_001270 ,,,,, ,,,,, ,,,,, ,,,,, 5133,5133,5133,5133,5133,5133 ,,,,, ,,,,, ,,,,, ;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001270 ,,,,, ,,,,, SJBALL270_D DDX5,MIR3064 chr17 62502194 - coding ANKLE2 chr12 133331720 - coding > 0 3 188 42 0.161 0.821 0 286 0.006 0.129 227 226 GCCGGGACCGAGGGTTTGGTGCACCTCGATTTGGAGGAAGTAGGGCAGCTTCGGCTGGTGTCATCGGTGTCCTTCCTCCGCTGCCGCCCCCGCAAGGCTTCGCCGTCATCGAGGCCATTTCCAGCGACTTGTCGCACGCTTTTCTATATACTTCGTTCCCCGCCAACCGCAACCATTGACGCCATGTCGGGTTATTCGAGTGACCGAGACCGCGGCCGGGACCGAGGGTGAAATGACAATGGATGCTCTGTTGGCTCGATTGAAACTT CTX 240.04 HQ 0 Fusion 0,3 NM_004396, , 1, , 44, , , NM_015114,NM_015114 61,61 2, tuple,tuple 182,182 2817,2817 75, , PGPRVWCTSIWRK*GSFGWCHRCPSSAAAPARLRRHRGHFQRLVARFSIYFVPRQPQPLTPCRVIRVTETAAGTEGEMTMDALLARLKL, DDX5:NM_004396[1,1]-ANKLE2:NM_015114[2,13]; geneB_transcripts=NM_015114 , 1, SJBALL270_D YPEL5 chr2 30369932 + 5utr CHD1 chr5 98262239 - 5utr > 2 17 86 61 0.000 0.000 22 227 0.008 0.136 86 81 GGAGACTCGGGTGGCCGAGGGGCTTCATACCAGCTGAAGAGCGACAAGCCGCTGGCAGCCGCGGATCTCACCGCCGCTCAGGGTGAATCAAAGGAGAGTCCCAGAAAACCTGTGACTGTTGAAGAAAATTCATCTGTGAATT CTX 227.03 HQ 2 other ,,, NM_001127399,NM_001127400,NM_001127401,NM_016061 ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ;;; geneB_no_transcripts ,,, ,,, SJBALL270_D TGIF2,TGIF2-C20orf24,C20orf24 chr20 35207369 + coding TPTE chr21 10995159 + intergenic > 11 0 56 79 0.051 0.512 444 1 0.192 0.000 57 58 CCCTCAGAGCAGGAGAAGCTGAGCCTTTCTGGACAGACCAACCTGTCAGTGCTGCAAGTTACTTCTACAACCATAACAGTAATAATAATAATAGTAAGAAGAGGACTGAGTGCAGTGGCTGGCTCACGCTTGTAATCCCA CTX 216.52 HQ 0 CLoss 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 NM_001199513,NM_001199513,NM_001199513,NM_001199513,NM_001199514,NM_001199514,NM_001199514,NM_001199514,NM_001199515,NM_001199515,NM_001199515,NM_001199515,NM_001199535,NM_001199535,NM_001199535,NM_001199535,NM_021809,NM_021809,NM_021809,NM_021809 ,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,, 192,192,192,192,192,192,192,192,192,192,192,192,192,192,192,192,192,192,192,192 ,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,, NM_199260,NM_199259,NM_199261,NM_001290224,NM_199260,NM_199259,NM_199261,NM_001290224,NM_199260,NM_199259,NM_199261,NM_001290224,NM_199260,NM_199259,NM_199261,NM_001290224,NM_199260,NM_199259,NM_199261,NM_001290224 ,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,, ;;;;;;;;;;;;;;;;;;; geneB_no_transcripts ,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,, SJBALL270_D NA chr8 62916590 - intergenic HLA-D chr6 32547155 - 5utr > 8 0 163 64 0.947 0.458 304 1 0.700 0.000 164 165 CTTCCATGCTGTGGAAGCTTTGTTCTTTTGCTCTTCACAATAAATCTTGCTGTTGCTCACTCTTCGGGTCTGTGCCACCTTTAAGAGCTGTAACACTCACTGTGAAGATTCGCGGCTTCATTCTTGAAGTCAGCGAAACCACGAACCCACCGGAAGGAACAAACTCTGGACACACTAGAATTGATGGTAGAGGTGATAAGGCATGAGACAGAAATAATAGGAAAGAATTTG CTX 164.88 HQ 0 other , , , , , , , , NM_001243965,NM_002124 , , , ,788 ,801 , , , ; geneB_CDS_mapping_exception=NM_001243965:-4;geneB_breakpoint_not_mapped_to_CDS=NM_001243965;geneB_no_inframe_contig_found geneB_transcripts=NM_001243965,NM_002124;geneb_utr_codons=5 , , SJBALL270_D TGIF2,TGIF2-C20orf24,C20orf24 chr20 35207370 + coding ZNF217 chr20 52224735 + intergenic > 13 12 90 217 0.000 0.000 1183 635 0.192 0.097 90 89 ACTGGCTGTACTTGCACCGCTACAACGCCTACCCCTCAGAGCAGGAGAAGCTGAGCCTTTCTGGACAGACCAACCTGTCAGTGCTGCAAGGACCTGCCAGGGGCGCTTATACCGGAGGGTGTTCAGAGCAGGAAAGGAAGAGATCAAATCTGAACCCGGATCCGTCTCCTACAGAACCTGAGTCGCTCAATCATCAGCTAGATCGCCCCGTGTAGACAAAGCAAGTGGAATTATTTGAAGAGTATACCTTGAGCTGGGCAATCCTCATAGAAGGTCGGGGACGACCTGCCCTTCAGTGTTCCTGGA DEL 156.27 HQ 0 CLoss 0,0,0,0,0 NM_001199513,NM_001199514,NM_001199515,NM_001199535,NM_021809 ,,,, ,,,, ,,,, 192,192,192,192,192 ,,,, ,,,, NM_006526,NM_006526,NM_006526,NM_006526,NM_006526 ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ;;;; geneB_no_transcripts ,,,, ,,,, SJBALL270_D ADARB2 chr10 1610901 + intron ARHGAP24 chr4 86491673 + 5utr > 0 3 72 52 0.000 0.000 0 128 0.020 0.113 72 69 GCTGGAGGTCTTCACATGGAGTTAAAATGTCACTGTTTCCTAAGGAGTTTGGAGACCAGGCCCTTGGACAGGAAAGTCCATCAGCTTGATAATGGAGGAGAACAATGACTCCACGGAGAAC CTX 128.00 HQ 0 other 0,0 NM_018702, , 1, , , , , NM_001025616,NM_001025616 -6,-6 2, tuple,tuple , 2247,2247 26, , LEVFTWS*NVTVS*GVWRPGPWTGKSISLIMEENNDSTEN, ADARB2:NM_018702[1,1]-ARHGAP24:NM_001025616[2,10]; geneB_transcripts=NM_001025616;geneb_utr_codons=7 , 1, SJBALL270_D VCL chr10 75869343 + intron YWHAE chr17 1248601 - 3utr > 24 2 50 256 0.000 0.000 86 90 0.111 0.041 50 46 GTGTGGGCTGTGCTAAAGCTAGATGAAATGTTTGCATTTTCTTTTTTTTTTTTTTTTTTTTTTAAACAGTTTTCAAAAGTTTTTAAAGGCAAGAGTGAATTTCTGTGGATTTTACTGGTCCCAGCTTTTAGGTTCTTTAAGACACTAACAGGACTACATAGAGGCTTTTTCAGCATTACTGTGTCGTCTCCGTGCCAGATGTGGCAAGATCACCATTAGCAAATGGAAATTACATTTGAAAGCCATTAGACTTATAGGTGATGCAAGCATCTAAGAGAGAGGTTAATCACACTATAGAGGCAC CTX 112.36 HQ 3 other , NM_003373,NM_014000 , , , 2745,2745 , , NM_006761,NM_006761 , , , , 768,768 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_006761;geneb_utr_codons=13 , , SJBALL270_D EBF1 chr5 158523983 - coding LOC101927697 chr5 157796618 - 3utr > 6 21 95 306 0.010 0.000 341 664 0.038 0.166 97 97 CAACTTCTCCCACTTCGCCCTGGCCCTCTACGACAGACAGGGCCAGCCCGTGGAGATCGAGAGGACAGCGTTTGTGGGGTTCGTGGAGAAGGAAAAAGAGGGAAAATAGAGAAGAGTAAGAAAAAGTGATGGAGGAAGGAAGAGGAAAAGAAGCAAGGATCCAAAATGCAAATGTGGGACATTTTAGAAGAGCAGAACGTTGCATTTCAGCCTTCCTGTCTGATATAACCCATCTGGTGACTGCATTCAAAAGAGCCCTACCAAGAATATTTTCATGGAGTTATTTTTCCACTGTGTATTTCACACTTCATCTTTGCAGGAGAATGGATGGATTTACTTGGCACGTAGCAGGGGACAGTCTGTGGAAAGAAGTGAGAAGGATAATCCAATAGCAAAAGTGAGG DEL 74.86 HQ 1 CLoss ,, NM_001290360,NM_024007,NM_182708 ,, ,, ,, 290,290,290 ,, ,, ,, ,, ,, ,, ,, ,, ,, ,, ,, ;; geneB_no_transcripts ,, ,, SJBALL270_D TGIF2,TGIF2-C20orf24,C20orf24 chr20 35207369 + coding ZNF217 chr20 52221977 + intergenic > 11 12 88 272 0.519 0.000 444 592 0.192 0.190 89 90 ACTGGCTGTACTTGCACCGCTACAACGCCTACCCCTCAGAGCAGGAGAAGCTGAGCCTTTCTGGACAGACCAACCTGTCAGTGCTGCAAGTTACTTCTACAACCATAACAGTAATAATAATAATAGTAAGAAGAGGACTGAGTGCAGTGGCTGGCTCACGCTTGTAATCCCAGCACCTTGGGAGGCCAAGGCCGGCGGATTGCTTGAGTCCAGGAGTTCGAGACCAGCCTGGACAACATGGCGAAACCCTGTCTCTACAAAATACAAAAATTATTACAAAATTAGCCAGGAGTGGTGGCAGGCACCTGTAATCCCAGCTACTCAAGAGTCTGAGGCAGGAGATCACTTGAACCCAGGAGGC DEL 72.87 HQ 0 CLoss 0,0,0,0,0 NM_001199513,NM_001199514,NM_001199515,NM_001199535,NM_021809 ,,,, ,,,, ,,,, 192,192,192,192,192 ,,,, ,,,, NM_006526,NM_006526,NM_006526,NM_006526,NM_006526 ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ;;;; geneB_no_transcripts ,,,, ,,,, SJBALL270_D CRLF2 chrX 1314894 - coding CRLF2 chrX 1315015 - coding > 9 4 262 88 0.000 0.000 409 124 0.385 0.006 263 264 AACAAACAACGAGAACCAAGAAAAAAAAACGAACACCAAAAAATGAGGGAGAGTGGTTAGGGATGAGATGTAACATCACGTTGAAAACGTACAGCCGCACGTCATGTTGAAAACTGACAGCCGCCTTTTCATTTTGTTTCAGATGCCTGTGCAGAGACACCAACGCCTCCCAAACCAAAGCTGTCCAAATTTATTTTAATTTCCAGCCTGGCCATCCTTCTGATGGTGTCTCTCCTCCTTCTGTCTTTATGGAAATTATGGAGATGCCTGTGCAGAGACACCAACGCCTCCCAAACCAAAGCTGTCCAAATTTATTTTAATTTCCAGCCTGGCCATCCTTCTGATGGTGT Internal_dup 40.90 HQ 2 ITD 0,0,0,0,0,0,0,0,3,0,3,0 NM_001012288,NM_022148,NM_001012288,NM_022148,NM_001012288,NM_022148,NM_001012288,NM_022148,,,, ,,,,,,,,,,, 5,6,5,6,5,6,5,6,,,, ,,,,,,,,,,, 431,767,431,767,431,767,431,767,,,, ,,,,,,,,,,, ,,,,,,,,,,, NM_001012288,NM_001012288,NM_001012288,NM_001012288,NM_022148,NM_022148,NM_022148,NM_022148,NM_001012288,NM_001012288,NM_022148,NM_022148 104,104,104,104,216,216,216,216,104,104,216,216 5,5,5,5,6,6,6,6,,,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 311,311,311,311,647,647,647,647,311,311,647,647 431,431,431,431,767,767,767,767,431,431,767,767 47,47,87,87,47,47,87,87,,,, ,,,,,,,,,,, NKQREPRKKNEHQKMRESG*G*DVTSR*KRTAARHVEN*QPPFHFVSDACAETPTPPKPKLSKFILISSLAILLMVSLLLLSLWKLWRCLCRDTNASQTKAVQIYFNFQPGHPSDG,NKQREPRKKNEHQKMRESG*G*DVTSR*KRTAARHVEN*QPPFHFVSDACAETPTPPKPKLSKFILISSLAILLMVSLLLLSLWKLWRCLCRDTNASQTKAVQIYFNFQPGHPSDG,TNNENQEKKTNTKK*GRVVRDEM*HHVENVQPHVMLKTDSRLFILFQMPVQRHQRLPNQSCPNLF*FPAWPSF*WCLSSFCLYGNYGDACAETPTPPKPKLSKFILISSLAILLMV,TNNENQEKKTNTKK*GRVVRDEM*HHVENVQPHVMLKTDSRLFILFQMPVQRHQRLPNQSCPNLF*FPAWPSF*WCLSSFCLYGNYGDACAETPTPPKPKLSKFILISSLAILLMV,NKQREPRKKNEHQKMRESG*G*DVTSR*KRTAARHVEN*QPPFHFVSDACAETPTPPKPKLSKFILISSLAILLMVSLLLLSLWKLWRCLCRDTNASQTKAVQIYFNFQPGHPSDG,NKQREPRKKNEHQKMRESG*G*DVTSR*KRTAARHVEN*QPPFHFVSDACAETPTPPKPKLSKFILISSLAILLMVSLLLLSLWKLWRCLCRDTNASQTKAVQIYFNFQPGHPSDG,TNNENQEKKTNTKK*GRVVRDEM*HHVENVQPHVMLKTDSRLFILFQMPVQRHQRLPNQSCPNLF*FPAWPSF*WCLSSFCLYGNYGDACAETPTPPKPKLSKFILISSLAILLMV,TNNENQEKKTNTKK*GRVVRDEM*HHVENVQPHVMLKTDSRLFILFQMPVQRHQRLPNQSCPNLF*FPAWPSF*WCLSSFCLYGNYGDACAETPTPPKPKLSKFILISSLAILLMV,,,, CRLF2:NM_001012288[1,5]-CRLF2:NM_001012288[5,5];CRLF2:NM_022148[1,6]-CRLF2:NM_001012288[5,5];CRLF2:NM_001012288[1,5]-CRLF2:NM_001012288[5,5];CRLF2:NM_022148[1,6]-CRLF2:NM_001012288[5,5];CRLF2:NM_001012288[1,5]-CRLF2:NM_022148[6,6];CRLF2:NM_022148[1,6]-CRLF2:NM_022148[6,6];CRLF2:NM_001012288[1,5]-CRLF2:NM_022148[6,6];CRLF2:NM_022148[1,6]-CRLF2:NM_022148[6,6];;;; ERROR_geneB_multiple_matching_frames=NM_001012288;ERROR_geneB_multiple_matching_frames=NM_022148 geneB_transcripts=NM_001012288,NM_022148 ,,,,,,,,,,, 0,0,1,1,0,0,1,1,,,, SJBALL270_D TGIF2,TGIF2-C20orf24,C20orf24 chr20 35207369 + coding ZNF217 chr20 52224820 + intergenic > 9 10 226 219 0.000 0.000 255 522 0.192 0.000 238 238 GGGACAGACACGTTTACCCAAGGTCCAGCCTAGCCCCTAGGCACCATGTCGGACAGTGATCTAGGTGAGGACGAAGGCCTCCTCTCCCTGGCGGGCAAAAGGAAGCGCAGGGGGAACCTGCCCAAGGAGTCGGTGAAGATCCTCCGGGACTGGCTGTACTTGCACCGCTACAACGCCTACCCCTCAGAGCAGGAGAAGCTGAGCCTTTCTGGACAGACCAACCTGTCAGTGCTGCAAAACCTGAGTCGCTCAATCATCAGCTAGATCGCCCCGTGTAGACAAAGCAAGTGGAATTATTTGAAGAGTATACCTTGAGCTGGGCAATCCTCATAGAAGGTCGGGGACGACCTGCCCTTCAGTGTTCCTGGAGCATCTTCTCCAAAGTGGAGGTCGAGCCAGGCCTAGGAGGAAAGAGAGGGCAACTGCGGACGACCCCACCGCAGAAGAGGTGAAACC DEL 25.50 HQ 0 CLoss 0,0,0,0,0 NM_001199513,NM_001199514,NM_001199515,NM_001199535,NM_021809 ,,,, ,,,, ,,,, 192,192,192,192,192 ,,,, ,,,, NM_006526,NM_006526,NM_006526,NM_006526,NM_006526 ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ;;;; geneB_no_transcripts ,,,, ,,,, SJBALL270_D PPARGC1B chr5 149109983 + coding BCOR chrX 39937225 - 5utr > 0 2 101 210 0.000 0.000 0 131 0.000 0.095 101 98 CACGCTGCAGCCGCGGCTGGAAGATGGCGGGGAACGACTGCGGCGCGCTGCTGGACGAAGAGCTCTCCTCCTTCTTCCTCAACTATCTCGCTGACACGCAGACTAGACGCTTGAAGCAAAGCTGCCATCCCAGAAGACGACATGCTCTCAGCAACCCCCCTGTATGGGAACGTTCACAGCTGGATGAACAGCGAGAGGGTCCGCATGTGTGGGGCGAGCGAAGACAGGAAAATCCTTGTAAATGATGGTGACGCTTCAAAAGCCAGACTGGAACTGAGGGAAGAGAATCCCTTGAACCACAACGTGGTGGATGCGAGCACGGC CTX 154.56 LQ 2 upTSS 0,0,0,0,0,0,0,0,2,2,2,2 NM_001172698,NM_133263,NM_001172698,NM_133263,NM_001172698,NM_133263,NM_001172698,NM_133263,,,, ,,,,,,,,,,, 1,1,1,1,1,1,1,1,,,, ,,,,,,,,,,, 78,78,78,78,78,78,78,78,,,, ,,,,,,,,,,, ,,,,,,,,,,, NM_001123383,NM_001123383,NM_001123384,NM_001123384,NM_001123385,NM_001123385,NM_017745,NM_017745,NM_001123383,NM_001123384,NM_001123385,NM_017745 -13,-13,-13,-13,-13,-13,-13,-13,-13,-13,-13,-13 2,2,2,2,2,2,2,2,,,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple ,,,,,,,,,,, 5166,5166,5112,5112,5268,5268,5166,5166,5166,5112,5268,5166 36,36,36,36,36,36,36,36,,,, ,,,,,,,,,,, HAAAAAGRWRGTTAARCWTKSSPPSSSTISLTRRLDA*SKAAIPEDDMLSATPLYGNVHSWMNSERVRMCGASEDRKILVNDGDASKARLELREENPLNHNVVDAST,HAAAAAGRWRGTTAARCWTKSSPPSSSTISLTRRLDA*SKAAIPEDDMLSATPLYGNVHSWMNSERVRMCGASEDRKILVNDGDASKARLELREENPLNHNVVDAST,HAAAAAGRWRGTTAARCWTKSSPPSSSTISLTRRLDA*SKAAIPEDDMLSATPLYGNVHSWMNSERVRMCGASEDRKILVNDGDASKARLELREENPLNHNVVDAST,HAAAAAGRWRGTTAARCWTKSSPPSSSTISLTRRLDA*SKAAIPEDDMLSATPLYGNVHSWMNSERVRMCGASEDRKILVNDGDASKARLELREENPLNHNVVDAST,HAAAAAGRWRGTTAARCWTKSSPPSSSTISLTRRLDA*SKAAIPEDDMLSATPLYGNVHSWMNSERVRMCGASEDRKILVNDGDASKARLELREENPLNHNVVDAST,HAAAAAGRWRGTTAARCWTKSSPPSSSTISLTRRLDA*SKAAIPEDDMLSATPLYGNVHSWMNSERVRMCGASEDRKILVNDGDASKARLELREENPLNHNVVDAST,HAAAAAGRWRGTTAARCWTKSSPPSSSTISLTRRLDA*SKAAIPEDDMLSATPLYGNVHSWMNSERVRMCGASEDRKILVNDGDASKARLELREENPLNHNVVDAST,HAAAAAGRWRGTTAARCWTKSSPPSSSTISLTRRLDA*SKAAIPEDDMLSATPLYGNVHSWMNSERVRMCGASEDRKILVNDGDASKARLELREENPLNHNVVDAST,,,, PPARGC1B:NM_001172698[1,1]-BCOR:NM_001123383[2,15];PPARGC1B:NM_133263[1,1]-BCOR:NM_001123383[2,15];PPARGC1B:NM_001172698[1,1]-BCOR:NM_001123384[2,14];PPARGC1B:NM_133263[1,1]-BCOR:NM_001123384[2,14];PPARGC1B:NM_001172698[1,1]-BCOR:NM_001123385[2,15];PPARGC1B:NM_133263[1,1]-BCOR:NM_001123385[2,15];PPARGC1B:NM_001172698[1,1]-BCOR:NM_017745[2,15];PPARGC1B:NM_133263[1,1]-BCOR:NM_017745[2,15];;;; geneB_transcripts=NM_001123383,NM_001123384,NM_001123385,NM_017745;geneb_utr_codons=13 ,,,,,,,,,,, 0,0,0,0,0,0,0,0,,,, SJBALL270_D PTER chr10 16547159 + coding NFATC1 chr18 77193577 + coding > 2 0 85 52 0.000 0.000 67 1 0.091 0.000 86 84 AATATGATCTCTTTGGTACTGAACTACTTCATTACCAACTCGGCCCAGATATTGACATGCCTGATGATAACAAAAGAATTAGAAGCCCGACCCTGCCCGCCCTGGACTGGCAGCTGCCGTCCCACTCAGGCCCGTG CTX 77.31 LQ 2 Fusion 1,1,0,1,1,1,1,0,1,1,1,1,0,1,1,1,1,0,1,1,1,1,0,1,1,1,1,0,1,1,1,1,0,1,1,1,1,0,1,1,1,1,0,1,1,1,1,0,1,1 NM_001001484,NM_001261836,NM_001261837,NM_001261838,NM_030664,NM_001001484,NM_001261836,NM_001261837,NM_001261838,NM_030664,NM_001001484,NM_001261836,NM_001261837,NM_001261838,NM_030664,NM_001001484,NM_001261836,NM_001261837,NM_001261838,NM_030664,NM_001001484,NM_001261836,NM_001261837,NM_001261838,NM_030664,NM_001001484,NM_001261836,NM_001261837,NM_001261838,NM_030664,NM_001001484,NM_001261836,NM_001261837,NM_001261838,NM_030664,NM_001001484,NM_001261836,NM_001261837,NM_001261838,NM_030664,NM_001001484,NM_001261836,NM_001261837,NM_001261838,NM_030664,NM_001001484,NM_001261836,NM_001261837,NM_001261838,NM_030664 280,280,,131,280,280,280,,131,280,280,280,,131,280,280,280,,131,280,280,280,,131,280,280,280,,131,280,280,280,,131,280,280,280,,131,280,280,280,,131,280,280,280,,131,280 5,4,4,3,5,5,4,4,3,5,5,4,4,3,5,5,4,4,3,5,5,4,4,3,5,5,4,4,3,5,5,4,4,3,5,5,4,4,3,5,5,4,4,3,5,5,4,4,3,5 perfect,perfect,,perfect,perfect,perfect,perfect,,perfect,perfect,perfect,perfect,,perfect,perfect,tuple,tuple,,tuple,tuple,perfect,perfect,,perfect,perfect,perfect,perfect,,perfect,perfect,perfect,perfect,,perfect,perfect,tuple,tuple,,tuple,tuple,perfect,perfect,,perfect,perfect,perfect,perfect,,perfect,perfect 839,839,,392,839,839,839,,392,839,839,839,,392,839,839,839,,392,839,839,839,,392,839,839,839,,392,839,839,839,,392,839,839,839,,392,839,839,839,,392,839,839,839,,392,839 26,26,,26,26,26,26,,26,26,26,26,,26,26,26,26,,26,26,26,26,,26,26,26,26,,26,26,26,26,,26,26,26,26,,26,26,26,26,,26,26,26,26,,26,26 82,82,,82,82,82,82,,82,82,82,82,,82,82,82,82,,82,82,82,82,,82,82,82,82,,82,82,82,82,,82,82,82,82,,82,82,82,82,,82,82,82,82,,82,82 NM_001278669,NM_001278669,NM_001278669,NM_001278669,NM_001278669,NM_001278670,NM_001278670,NM_001278670,NM_001278670,NM_001278670,NM_001278672,NM_001278672,NM_001278672,NM_001278672,NM_001278672,NM_001278673,NM_001278673,NM_001278673,NM_001278673,NM_001278673,NM_001278675,NM_001278675,NM_001278675,NM_001278675,NM_001278675,NM_006162,NM_006162,NM_006162,NM_006162,NM_006162,NM_172387,NM_172387,NM_172387,NM_172387,NM_172387,NM_172388,NM_172388,NM_172388,NM_172388,NM_172388,NM_172389,NM_172389,NM_172389,NM_172389,NM_172389,NM_172390,NM_172390,NM_172390,NM_172390,NM_172390 409,409,409,409,409,409,409,409,409,409,396,396,396,396,396,-63,-63,-63,-63,-63,396,396,396,396,396,409,409,409,409,409,396,396,396,396,396,-63,-63,-63,-63,-63,396,396,396,396,396,409,409,409,409,409 3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,2,2,2,2,2,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,2,2,2,2,2,3,3,3,3,3,3,3,3,3,3 tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 1227,1227,1227,1227,1227,1227,1227,1227,1227,1227,1188,1188,1188,1188,1188,,,,,,1188,1188,1188,1188,1188,1227,1227,1227,1227,1227,1188,1188,1188,1188,1188,,,,,,1188,1188,1188,1188,1188,1227,1227,1227,1227,1227 2832,2832,2832,2832,2832,2142,2142,2142,2142,2142,2103,2103,2103,2103,2103,1416,1416,1416,1416,1416,2112,2112,2112,2112,2112,2478,2478,2478,2478,2478,2793,2793,2793,2793,2793,1062,1062,1062,1062,1062,2439,2439,2439,2439,2439,2151,2151,2151,2151,2151 27,27,27,27,27,27,27,27,27,27,27,27,27,27,27,30,30,30,30,30,27,27,27,27,27,27,27,27,27,27,27,27,27,27,27,30,30,30,30,30,27,27,27,27,27,27,27,27,27,27 83,83,,83,83,83,83,,83,83,83,83,,83,83,92,92,,92,92,83,83,,83,83,83,83,,83,83,83,83,,83,83,92,92,,92,92,83,83,,83,83,83,83,,83,83 YDLFGTELLHYQLGPDIDMPDDNKRIRSPTLPALDWQLPSHSGP,YDLFGTELLHYQLGPDIDMPDDNKRIRSPTLPALDWQLPSHSGP,YDLFGTELLHYQLGPDIDMPDDNKRIRSPTLPALDWQLPSHSGP,YDLFGTELLHYQLGPDIDMPDDNKRIRSPTLPALDWQLPSHSGP,YDLFGTELLHYQLGPDIDMPDDNKRIRSPTLPALDWQLPSHSGP,YDLFGTELLHYQLGPDIDMPDDNKRIRSPTLPALDWQLPSHSGP,YDLFGTELLHYQLGPDIDMPDDNKRIRSPTLPALDWQLPSHSGP,YDLFGTELLHYQLGPDIDMPDDNKRIRSPTLPALDWQLPSHSGP,YDLFGTELLHYQLGPDIDMPDDNKRIRSPTLPALDWQLPSHSGP,YDLFGTELLHYQLGPDIDMPDDNKRIRSPTLPALDWQLPSHSGP,YDLFGTELLHYQLGPDIDMPDDNKRIRSPTLPALDWQLPSHSGP,YDLFGTELLHYQLGPDIDMPDDNKRIRSPTLPALDWQLPSHSGP,YDLFGTELLHYQLGPDIDMPDDNKRIRSPTLPALDWQLPSHSGP,YDLFGTELLHYQLGPDIDMPDDNKRIRSPTLPALDWQLPSHSGP,YDLFGTELLHYQLGPDIDMPDDNKRIRSPTLPALDWQLPSHSGP,YDLFGTELLHYQLGPDIDMPDDNKRIRSPTLPALDWQLPSHSGP,YDLFGTELLHYQLGPDIDMPDDNKRIRSPTLPALDWQLPSHSGP,YDLFGTELLHYQLGPDIDMPDDNKRIRSPTLPALDWQLPSHSGP,YDLFGTELLHYQLGPDIDMPDDNKRIRSPTLPALDWQLPSHSGP,YDLFGTELLHYQLGPDIDMPDDNKRIRSPTLPALDWQLPSHSGP,YDLFGTELLHYQLGPDIDMPDDNKRIRSPTLPALDWQLPSHSGP,YDLFGTELLHYQLGPDIDMPDDNKRIRSPTLPALDWQLPSHSGP,YDLFGTELLHYQLGPDIDMPDDNKRIRSPTLPALDWQLPSHSGP,YDLFGTELLHYQLGPDIDMPDDNKRIRSPTLPALDWQLPSHSGP,YDLFGTELLHYQLGPDIDMPDDNKRIRSPTLPALDWQLPSHSGP,YDLFGTELLHYQLGPDIDMPDDNKRIRSPTLPALDWQLPSHSGP,YDLFGTELLHYQLGPDIDMPDDNKRIRSPTLPALDWQLPSHSGP,YDLFGTELLHYQLGPDIDMPDDNKRIRSPTLPALDWQLPSHSGP,YDLFGTELLHYQLGPDIDMPDDNKRIRSPTLPALDWQLPSHSGP,YDLFGTELLHYQLGPDIDMPDDNKRIRSPTLPALDWQLPSHSGP,YDLFGTELLHYQLGPDIDMPDDNKRIRSPTLPALDWQLPSHSGP,YDLFGTELLHYQLGPDIDMPDDNKRIRSPTLPALDWQLPSHSGP,YDLFGTELLHYQLGPDIDMPDDNKRIRSPTLPALDWQLPSHSGP,YDLFGTELLHYQLGPDIDMPDDNKRIRSPTLPALDWQLPSHSGP,YDLFGTELLHYQLGPDIDMPDDNKRIRSPTLPALDWQLPSHSGP,YDLFGTELLHYQLGPDIDMPDDNKRIRSPTLPALDWQLPSHSGP,YDLFGTELLHYQLGPDIDMPDDNKRIRSPTLPALDWQLPSHSGP,YDLFGTELLHYQLGPDIDMPDDNKRIRSPTLPALDWQLPSHSGP,YDLFGTELLHYQLGPDIDMPDDNKRIRSPTLPALDWQLPSHSGP,YDLFGTELLHYQLGPDIDMPDDNKRIRSPTLPALDWQLPSHSGP,YDLFGTELLHYQLGPDIDMPDDNKRIRSPTLPALDWQLPSHSGP,YDLFGTELLHYQLGPDIDMPDDNKRIRSPTLPALDWQLPSHSGP,YDLFGTELLHYQLGPDIDMPDDNKRIRSPTLPALDWQLPSHSGP,YDLFGTELLHYQLGPDIDMPDDNKRIRSPTLPALDWQLPSHSGP,YDLFGTELLHYQLGPDIDMPDDNKRIRSPTLPALDWQLPSHSGP,YDLFGTELLHYQLGPDIDMPDDNKRIRSPTLPALDWQLPSHSGP,YDLFGTELLHYQLGPDIDMPDDNKRIRSPTLPALDWQLPSHSGP,YDLFGTELLHYQLGPDIDMPDDNKRIRSPTLPALDWQLPSHSGP,YDLFGTELLHYQLGPDIDMPDDNKRIRSPTLPALDWQLPSHSGP,YDLFGTELLHYQLGPDIDMPDDNKRIRSPTLPALDWQLPSHSGP PTER:NM_001001484[1,5]-NFATC1:NM_001278669[3,10];PTER:NM_001261836[1,4]-NFATC1:NM_001278669[3,10];PTER:NM_001261837[1,4]-NFATC1:NM_001278669[3,10];PTER:NM_001261838[1,3]-NFATC1:NM_001278669[3,10];PTER:NM_030664[1,5]-NFATC1:NM_001278669[3,10];PTER:NM_001001484[1,5]-NFATC1:NM_001278670[3,9];PTER:NM_001261836[1,4]-NFATC1:NM_001278670[3,9];PTER:NM_001261837[1,4]-NFATC1:NM_001278670[3,9];PTER:NM_001261838[1,3]-NFATC1:NM_001278670[3,9];PTER:NM_030664[1,5]-NFATC1:NM_001278670[3,9];PTER:NM_001001484[1,5]-NFATC1:NM_001278672[3,9];PTER:NM_001261836[1,4]-NFATC1:NM_001278672[3,9];PTER:NM_001261837[1,4]-NFATC1:NM_001278672[3,9];PTER:NM_001261838[1,3]-NFATC1:NM_001278672[3,9];PTER:NM_030664[1,5]-NFATC1:NM_001278672[3,9];PTER:NM_001001484[1,5]-NFATC1:NM_001278673[2,9];PTER:NM_001261836[1,4]-NFATC1:NM_001278673[2,9];PTER:NM_001261837[1,4]-NFATC1:NM_001278673[2,9];PTER:NM_001261838[1,3]-NFATC1:NM_001278673[2,9];PTER:NM_030664[1,5]-NFATC1:NM_001278673[2,9];PTER:NM_001001484[1,5]-NFATC1:NM_001278675[3,8];PTER:NM_001261836[1,4]-NFATC1:NM_001278675[3,8];PTER:NM_001261837[1,4]-NFATC1:NM_001278675[3,8];PTER:NM_001261838[1,3]-NFATC1:NM_001278675[3,8];PTER:NM_030664[1,5]-NFATC1:NM_001278675[3,8];PTER:NM_001001484[1,5]-NFATC1:NM_006162[3,10];PTER:NM_001261836[1,4]-NFATC1:NM_006162[3,10];PTER:NM_001261837[1,4]-NFATC1:NM_006162[3,10];PTER:NM_001261838[1,3]-NFATC1:NM_006162[3,10];PTER:NM_030664[1,5]-NFATC1:NM_006162[3,10];PTER:NM_001001484[1,5]-NFATC1:NM_172387[3,10];PTER:NM_001261836[1,4]-NFATC1:NM_172387[3,10];PTER:NM_001261837[1,4]-NFATC1:NM_172387[3,10];PTER:NM_001261838[1,3]-NFATC1:NM_172387[3,10];PTER:NM_030664[1,5]-NFATC1:NM_172387[3,10];PTER:NM_001001484[1,5]-NFATC1:NM_172388[2,9];PTER:NM_001261836[1,4]-NFATC1:NM_172388[2,9];PTER:NM_001261837[1,4]-NFATC1:NM_172388[2,9];PTER:NM_001261838[1,3]-NFATC1:NM_172388[2,9];PTER:NM_030664[1,5]-NFATC1:NM_172388[2,9];PTER:NM_001001484[1,5]-NFATC1:NM_172389[3,10];PTER:NM_001261836[1,4]-NFATC1:NM_172389[3,10];PTER:NM_001261837[1,4]-NFATC1:NM_172389[3,10];PTER:NM_001261838[1,3]-NFATC1:NM_172389[3,10];PTER:NM_030664[1,5]-NFATC1:NM_172389[3,10];PTER:NM_001001484[1,5]-NFATC1:NM_172390[3,8];PTER:NM_001261836[1,4]-NFATC1:NM_172390[3,8];PTER:NM_001261837[1,4]-NFATC1:NM_172390[3,8];PTER:NM_001261838[1,3]-NFATC1:NM_172390[3,8];PTER:NM_030664[1,5]-NFATC1:NM_172390[3,8] geneB_transcripts=NM_001278669,NM_001278670,NM_001278672,NM_001278673,NM_001278675,NM_006162,NM_172387,NM_172388,NM_172389,NM_172390;geneb_utr_codons=13 ,,,,,,,,,,,,,,,SPT,SPT,,SPT,SPT,,,,,,,,,,,,,,,,SPT,SPT,,SPT,SPT,,,,,,,,,, 2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2 SJBALL270_D MEF2A chr15 100173379 + coding ARHGAP24 chr4 86491673 + 5utr > 2 5 197 57 0.000 0.000 66 52 0.020 0.113 202 199 TCTAATCTTGTAGAAAATTTCAGCTGTAGCCCTTGGACTAGAAGCTGAAATAACAGAAGCTGTGTACGATGCATTAGGGTATTGAAGAAAATTAACTTTTGAATTAAATATTTGGAATATAAGGAAATAAGGAAAGTTGACTGAAAATGGGGCGGAAGAAAATACAAATCACACGCATAATGGATGAAAGGAACCGACAGGAAAGTCCATCAGCTTGATAATGGAGGAGAACAATGACTCCACGGAGAACCCCCA CTX 57.39 LQ 0 CLoss 0,0,0,0,0,3 NM_001130926,NM_001130927,NM_001130928,NM_001171894,NM_005587, ,,,,, 2,2,1,4,3, ,,,,, 54,54,54,54,54, ,,,,, ,,,,, NM_001025616,NM_001025616,NM_001025616,NM_001025616,NM_001025616,NM_001025616 -6,-6,-6,-6,-6,-6 2,2,2,2,2, tuple,tuple,tuple,tuple,tuple,tuple ,,,,, 2247,2247,2247,2247,2247,2247 69,69,69,69,69, ,,,,, LIL*KISAVALGLEAEITEAVYDALGY*RKLTFELNIWNIRK*GKLTENGAEENTNHTHNG*KEPTGKSISLIMEENNDSTENP,LIL*KISAVALGLEAEITEAVYDALGY*RKLTFELNIWNIRK*GKLTENGAEENTNHTHNG*KEPTGKSISLIMEENNDSTENP,LIL*KISAVALGLEAEITEAVYDALGY*RKLTFELNIWNIRK*GKLTENGAEENTNHTHNG*KEPTGKSISLIMEENNDSTENP,LIL*KISAVALGLEAEITEAVYDALGY*RKLTFELNIWNIRK*GKLTENGAEENTNHTHNG*KEPTGKSISLIMEENNDSTENP,LIL*KISAVALGLEAEITEAVYDALGY*RKLTFELNIWNIRK*GKLTENGAEENTNHTHNG*KEPTGKSISLIMEENNDSTENP, MEF2A:NM_001130926[1,2]-ARHGAP24:NM_001025616[2,10];MEF2A:NM_001130927[1,2]-ARHGAP24:NM_001025616[2,10];MEF2A:NM_001130928[1,1]-ARHGAP24:NM_001025616[2,10];MEF2A:NM_001171894[1,4]-ARHGAP24:NM_001025616[2,10];MEF2A:NM_005587[1,3]-ARHGAP24:NM_001025616[2,10]; geneB_transcripts=NM_001025616;geneb_utr_codons=7 ,,,,, 1,1,1,1,1, SJBALL270_D LRRFIP1 chr2 238617274 + coding RNF111 chr15 59323001 + 5utr > 0 1 56 202 0.491 0.000 1 54 0.000 0.105 56 55 CCGCGCGGAGGCTCGCGAGATCCGCATGAAGGAGCTGGAGCGGCAGCAGAAGGAGGCTTTCCTTAAAGTTTCCCATGTCTCAATGGACTCCTGAATATAAGGAGCTCTACACCTTAAAAGTGGATATGAAGAGTGAGATTCCTTCTGATGCACCAAAGACACAGGAGAGTCTGAAAGGGATCCTTTTGCATCCAGAGCCCATTGGGGCAGCCAAAAGTTTTCCTGCAGGAGTTGAGATGATTAATAGTAAAGCGGGG CTX 54.98 LQ 3 upTSS 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,2,2,2 NM_001137550,NM_001137551,NM_001137552,NM_001137553,NM_004735,NM_001137550,NM_001137551,NM_001137552,NM_001137553,NM_004735,NM_001137550,NM_001137551,NM_001137552,NM_001137553,NM_004735,NM_001137550,NM_001137551,NM_001137552,NM_001137553,NM_004735,,,, ,,,,,,,,,,,,,,,,,,,,,,, 2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,,,, ,,,,,,,,,,,,,,,,,,,,,,, 183,153,153,153,153,183,153,153,153,153,183,153,153,153,153,183,153,153,153,153,,,, ,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,, NM_001270528,NM_001270528,NM_001270528,NM_001270528,NM_001270528,NM_001270529,NM_001270529,NM_001270529,NM_001270529,NM_001270529,NM_001270530,NM_001270530,NM_001270530,NM_001270530,NM_001270530,NM_017610,NM_017610,NM_017610,NM_017610,NM_017610,NM_001270528,NM_001270529,NM_001270530,NM_017610 -6,-6,-6,-6,-6,-6,-6,-6,-6,-6,-6,-6,-6,-6,-6,-6,-6,-6,-6,-6,-6,-6,-6,-6 2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,,,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple ,,,,,,,,,,,,,,,,,,,,,,, 2988,2988,2988,2988,2988,2958,2958,2958,2958,2958,2985,2985,2985,2985,2985,2961,2961,2961,2961,2961,2988,2958,2985,2961 20,20,20,20,20,20,20,20,20,20,20,20,20,20,20,20,20,20,20,20,,,, ,,,,,,,,,,,,,,,,,,,,,,, ARRLARSA*RSWSGSRRRLSLKFPMSQWTPEYKELYTLKVDMKSEIPSDAPKTQESLKGILLHPEPIGAAKSFPAGVEMINSKAG,ARRLARSA*RSWSGSRRRLSLKFPMSQWTPEYKELYTLKVDMKSEIPSDAPKTQESLKGILLHPEPIGAAKSFPAGVEMINSKAG,ARRLARSA*RSWSGSRRRLSLKFPMSQWTPEYKELYTLKVDMKSEIPSDAPKTQESLKGILLHPEPIGAAKSFPAGVEMINSKAG,ARRLARSA*RSWSGSRRRLSLKFPMSQWTPEYKELYTLKVDMKSEIPSDAPKTQESLKGILLHPEPIGAAKSFPAGVEMINSKAG,ARRLARSA*RSWSGSRRRLSLKFPMSQWTPEYKELYTLKVDMKSEIPSDAPKTQESLKGILLHPEPIGAAKSFPAGVEMINSKAG,ARRLARSA*RSWSGSRRRLSLKFPMSQWTPEYKELYTLKVDMKSEIPSDAPKTQESLKGILLHPEPIGAAKSFPAGVEMINSKAG,ARRLARSA*RSWSGSRRRLSLKFPMSQWTPEYKELYTLKVDMKSEIPSDAPKTQESLKGILLHPEPIGAAKSFPAGVEMINSKAG,ARRLARSA*RSWSGSRRRLSLKFPMSQWTPEYKELYTLKVDMKSEIPSDAPKTQESLKGILLHPEPIGAAKSFPAGVEMINSKAG,ARRLARSA*RSWSGSRRRLSLKFPMSQWTPEYKELYTLKVDMKSEIPSDAPKTQESLKGILLHPEPIGAAKSFPAGVEMINSKAG,ARRLARSA*RSWSGSRRRLSLKFPMSQWTPEYKELYTLKVDMKSEIPSDAPKTQESLKGILLHPEPIGAAKSFPAGVEMINSKAG,ARRLARSA*RSWSGSRRRLSLKFPMSQWTPEYKELYTLKVDMKSEIPSDAPKTQESLKGILLHPEPIGAAKSFPAGVEMINSKAG,ARRLARSA*RSWSGSRRRLSLKFPMSQWTPEYKELYTLKVDMKSEIPSDAPKTQESLKGILLHPEPIGAAKSFPAGVEMINSKAG,ARRLARSA*RSWSGSRRRLSLKFPMSQWTPEYKELYTLKVDMKSEIPSDAPKTQESLKGILLHPEPIGAAKSFPAGVEMINSKAG,ARRLARSA*RSWSGSRRRLSLKFPMSQWTPEYKELYTLKVDMKSEIPSDAPKTQESLKGILLHPEPIGAAKSFPAGVEMINSKAG,ARRLARSA*RSWSGSRRRLSLKFPMSQWTPEYKELYTLKVDMKSEIPSDAPKTQESLKGILLHPEPIGAAKSFPAGVEMINSKAG,ARRLARSA*RSWSGSRRRLSLKFPMSQWTPEYKELYTLKVDMKSEIPSDAPKTQESLKGILLHPEPIGAAKSFPAGVEMINSKAG,ARRLARSA*RSWSGSRRRLSLKFPMSQWTPEYKELYTLKVDMKSEIPSDAPKTQESLKGILLHPEPIGAAKSFPAGVEMINSKAG,ARRLARSA*RSWSGSRRRLSLKFPMSQWTPEYKELYTLKVDMKSEIPSDAPKTQESLKGILLHPEPIGAAKSFPAGVEMINSKAG,ARRLARSA*RSWSGSRRRLSLKFPMSQWTPEYKELYTLKVDMKSEIPSDAPKTQESLKGILLHPEPIGAAKSFPAGVEMINSKAG,ARRLARSA*RSWSGSRRRLSLKFPMSQWTPEYKELYTLKVDMKSEIPSDAPKTQESLKGILLHPEPIGAAKSFPAGVEMINSKAG,,,, LRRFIP1:NM_001137550[1,2]-RNF111:NM_001270528[2,14];LRRFIP1:NM_001137551[1,2]-RNF111:NM_001270528[2,14];LRRFIP1:NM_001137552[1,2]-RNF111:NM_001270528[2,14];LRRFIP1:NM_001137553[1,2]-RNF111:NM_001270528[2,14];LRRFIP1:NM_004735[1,2]-RNF111:NM_001270528[2,14];LRRFIP1:NM_001137550[1,2]-RNF111:NM_001270529[2,14];LRRFIP1:NM_001137551[1,2]-RNF111:NM_001270529[2,14];LRRFIP1:NM_001137552[1,2]-RNF111:NM_001270529[2,14];LRRFIP1:NM_001137553[1,2]-RNF111:NM_001270529[2,14];LRRFIP1:NM_004735[1,2]-RNF111:NM_001270529[2,14];LRRFIP1:NM_001137550[1,2]-RNF111:NM_001270530[2,14];LRRFIP1:NM_001137551[1,2]-RNF111:NM_001270530[2,14];LRRFIP1:NM_001137552[1,2]-RNF111:NM_001270530[2,14];LRRFIP1:NM_001137553[1,2]-RNF111:NM_001270530[2,14];LRRFIP1:NM_004735[1,2]-RNF111:NM_001270530[2,14];LRRFIP1:NM_001137550[1,2]-RNF111:NM_017610[2,14];LRRFIP1:NM_001137551[1,2]-RNF111:NM_017610[2,14];LRRFIP1:NM_001137552[1,2]-RNF111:NM_017610[2,14];LRRFIP1:NM_001137553[1,2]-RNF111:NM_017610[2,14];LRRFIP1:NM_004735[1,2]-RNF111:NM_017610[2,14];;;; geneB_transcripts=NM_001270528,NM_001270529,NM_001270530,NM_017610;geneb_utr_codons=7 ,,,,,,,,,,,,,,,,,,,,,,, 2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,,,, SJBALL270_D KCNMB3 chr3 178978908 - intron RNF111 chr15 59323001 + 5utr > 0 1 54 202 0.509 0.000 1 54 0.000 0.105 56 55 CCGCGCGGAGGCTCGCGAGATCCGCATGAAGGAGCTGGAGCGGCAGCAGAAGGAGGCTTTCCTTAAAGTTTCCCATGTCTCAATGGACTCCTGAATATAAGGAGCTCTACACCTTAAAAGTGGATATGAAGAGTGAGATTCCTTCTGATGCACCAAAGACACAGGAGAGTCTGAAAGGGATCCTTTTGCATCCAGAGCCCATTGGGGCAGCCAAAAGTTTTCCTGCAGGAGTTGAGATGATTAATAGTAAAGCGGGG CTX 53.02 LQ 2 upTSS 0,0,0,0,0,0,0,0,2,2,2,2 NM_001163677,NM_171828,NM_001163677,NM_171828,NM_001163677,NM_171828,NM_001163677,NM_171828,,,, ,,,,,,,,,,, 1,1,1,1,1,1,1,1,,,, ,,,,,,,,,,, 62,62,62,62,62,62,62,62,,,, ,,,,,,,,,,, ,,,,,,,,,,, NM_001270528,NM_001270528,NM_001270529,NM_001270529,NM_001270530,NM_001270530,NM_017610,NM_017610,NM_001270528,NM_001270529,NM_001270530,NM_017610 -6,-6,-6,-6,-6,-6,-6,-6,-6,-6,-6,-6 2,2,2,2,2,2,2,2,,,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple ,,,,,,,,,,, 2988,2988,2958,2958,2985,2985,2961,2961,2988,2958,2985,2961 20,20,20,20,20,20,20,20,,,, ,,,,,,,,,,, ARRLARSA*RSWSGSRRRLSLKFPMSQWTPEYKELYTLKVDMKSEIPSDAPKTQESLKGILLHPEPIGAAKSFPAGVEMINSKAG,ARRLARSA*RSWSGSRRRLSLKFPMSQWTPEYKELYTLKVDMKSEIPSDAPKTQESLKGILLHPEPIGAAKSFPAGVEMINSKAG,ARRLARSA*RSWSGSRRRLSLKFPMSQWTPEYKELYTLKVDMKSEIPSDAPKTQESLKGILLHPEPIGAAKSFPAGVEMINSKAG,ARRLARSA*RSWSGSRRRLSLKFPMSQWTPEYKELYTLKVDMKSEIPSDAPKTQESLKGILLHPEPIGAAKSFPAGVEMINSKAG,ARRLARSA*RSWSGSRRRLSLKFPMSQWTPEYKELYTLKVDMKSEIPSDAPKTQESLKGILLHPEPIGAAKSFPAGVEMINSKAG,ARRLARSA*RSWSGSRRRLSLKFPMSQWTPEYKELYTLKVDMKSEIPSDAPKTQESLKGILLHPEPIGAAKSFPAGVEMINSKAG,ARRLARSA*RSWSGSRRRLSLKFPMSQWTPEYKELYTLKVDMKSEIPSDAPKTQESLKGILLHPEPIGAAKSFPAGVEMINSKAG,ARRLARSA*RSWSGSRRRLSLKFPMSQWTPEYKELYTLKVDMKSEIPSDAPKTQESLKGILLHPEPIGAAKSFPAGVEMINSKAG,,,, KCNMB3:NM_001163677[1,1]-RNF111:NM_001270528[2,14];KCNMB3:NM_171828[1,1]-RNF111:NM_001270528[2,14];KCNMB3:NM_001163677[1,1]-RNF111:NM_001270529[2,14];KCNMB3:NM_171828[1,1]-RNF111:NM_001270529[2,14];KCNMB3:NM_001163677[1,1]-RNF111:NM_001270530[2,14];KCNMB3:NM_171828[1,1]-RNF111:NM_001270530[2,14];KCNMB3:NM_001163677[1,1]-RNF111:NM_017610[2,14];KCNMB3:NM_171828[1,1]-RNF111:NM_017610[2,14];;;; geneB_transcripts=NM_001270528,NM_001270529,NM_001270530,NM_017610;geneb_utr_codons=7 ,,,,,,,,,,, 2,2,2,2,2,2,2,2,,,, SJBALL270_D USP12 chr13 27745728 - coding ZMYM2 chr13 20534100 + 5utr > 0 4 66 95 0.795 0.031 0 198 0.000 0.076 66 67 AAGATGGCGCTGGCCGGATGGAAATCCTAATGACAGTCTCCAAATTCGCCTCCATCTGTACCATGGACCAAGAATCGCCTTCAGCCCTGTCTGGTGCATCCTTGGCAGAAAGTGAGGAGGAAAACACCCCCATTGTTCTTTGGCATGGACACAAGTTCAGTG ITX 41.93 LQ 2 Fusion 1,0,1,0 NM_182488,NM_182488,NM_182488,NM_182488 17,,17, 1,1,1,1 tuple,,tuple, 48,48,48,48 20,,20, 64,,64, NM_001190964,NM_001190965,NM_003453,NM_197968 -41,-25,-41,-25 2,2,2,2 tuple,tuple,tuple,tuple ,,, 4134,4134,4134,4134 24,25,24,25 74,,74, DGAGRMEILMTVSKFASICTMDQESPSALSGASLAESEEENTPIVLWHGHKFS,KMALAGWKS**QSPNSPPSVPWTKNRLQPCLVHPWQKVRRKTPPLFFGMDTSSV,DGAGRMEILMTVSKFASICTMDQESPSALSGASLAESEEENTPIVLWHGHKFS,KMALAGWKS**QSPNSPPSVPWTKNRLQPCLVHPWQKVRRKTPPLFFGMDTSSV USP12:NM_182488[1,1]-ZMYM2:NM_001190964[2,26];USP12:NM_182488[1,1]-ZMYM2:NM_001190965[2,25];USP12:NM_182488[1,1]-ZMYM2:NM_003453[2,26];USP12:NM_182488[1,1]-ZMYM2:NM_197968[2,25] geneB_transcripts=NM_001190964,NM_001190965,NM_003453,NM_197968;geneb_utr_codons=13 DQE,,DQE, 2,0,2,0 SJBALL270_D ELOVL5 chr6 53213612 - 5utr HIPK1 chr1 114483002 + coding > 0 2 60 54 0.000 0.000 1 103 0.000 0.026 60 56 CTCCGCCGCCGCCGCCTTGCTGCTGCTCAAAGCTGCTGCCGCCCCTTGGGCTAAAAGGTATGGCATCACAGCTGCAAGTGTGTTCGCCCCCATCAGTGTCGTCGAGTGCC CTX 29.21 LQ 2 upTSS 0,0,0,0,0,0,0,0,2,2 NM_001242828,NM_001242830,NM_001242831,NM_021814,NM_001242828,NM_001242830,NM_001242831,NM_021814,, ,,,,,,,,, 1,1,1,1,1,1,1,1,, ,,,,,,,,, ,,,,,,,,, ,,,,,,,,, ,,,,,,,,, NM_152696,NM_152696,NM_152696,NM_152696,NM_198268,NM_198268,NM_198268,NM_198268,NM_152696,NM_198268 0,0,0,0,0,0,0,0,0,0 2,2,2,2,2,2,2,2,, blat,blat,blat,blat,blat,blat,blat,blat,blat,blat ,,,,,,,,, 3228,3228,3228,3228,3633,3633,3633,3633,3228,3633 19,19,19,19,19,19,19,19,, ,,,,,,,,, PPPPPCCCSKLLPPLGLKGMASQLQVCSPPSVSSSA,PPPPPCCCSKLLPPLGLKGMASQLQVCSPPSVSSSA,PPPPPCCCSKLLPPLGLKGMASQLQVCSPPSVSSSA,PPPPPCCCSKLLPPLGLKGMASQLQVCSPPSVSSSA,PPPPPCCCSKLLPPLGLKGMASQLQVCSPPSVSSSA,PPPPPCCCSKLLPPLGLKGMASQLQVCSPPSVSSSA,PPPPPCCCSKLLPPLGLKGMASQLQVCSPPSVSSSA,PPPPPCCCSKLLPPLGLKGMASQLQVCSPPSVSSSA,, ELOVL5:NM_001242828[1,1]-HIPK1:NM_152696[2,15];ELOVL5:NM_001242830[1,1]-HIPK1:NM_152696[2,15];ELOVL5:NM_001242831[1,1]-HIPK1:NM_152696[2,15];ELOVL5:NM_021814[1,1]-HIPK1:NM_152696[2,15];ELOVL5:NM_001242828[1,1]-HIPK1:NM_198268[2,16];ELOVL5:NM_001242830[1,1]-HIPK1:NM_198268[2,16];ELOVL5:NM_001242831[1,1]-HIPK1:NM_198268[2,16];ELOVL5:NM_021814[1,1]-HIPK1:NM_198268[2,16];; geneB_transcripts=NM_152696,NM_198268;geneb_utr_codons=1 ,,,,,,,,, 2,2,2,2,2,2,2,2,, SJBALL270_D SFSWAP chr12 132195994 + coding DDX5 chr17 62500961 - coding > 0 5 141 63 0.000 0.045 0 176 0.042 0.019 141 139 GCGGTGGGGGCAGCCGAGTGGAGCTCTTGGTTTTCGGCTATGCCTGCAAGCTGTTCCGGGACGACGAGCGGGCCCTGGCTCAGGAACAGGGACAGCACCTCATCCCCTGGATGGGGGACCACAAGATCCTCATCGACAGGTTTGGTGCACCTCGATTTGGAGGAAGTAGGGCAGGGCCCTTATCTGGAAAGAAGTTTGGAAA CTX 25.16 LQ 2 Fusion 1,1 NM_001261411,NM_004592 74,74 1,1 perfect,perfect 218,218 45,45 139,139 NM_004396,NM_004396 15,15 2,2 blat,blat 45,45 1845,1845 46,46 140,140 GGGSRVELLVFGYACKLFRDDERALAQEQGQHLIPWMGDHKILIDRFGAPRFGGSRAGPLSGKKFG,GGGSRVELLVFGYACKLFRDDERALAQEQGQHLIPWMGDHKILIDRFGAPRFGGSRAGPLSGKKFG SFSWAP:NM_001261411[1,1]-DDX5:NM_004396[2,13];SFSWAP:NM_004592[1,1]-DDX5:NM_004396[2,13] geneB_transcripts=NM_004396;reannotated geneB from DDX5,MIR3064 to DDX5 , 2,2 SJBALL270_D SEMA6A chr5 115909882 - 5utr CHD1 chr5 98262239 - 5utr > 0 19 54 84 0.036 0.023 0 239 0.051 0.136 54 54 GCTGTACCAGTTCGCTCCGAGCCCCGGCCGCCTGTCCGTCGATGCACCGAAAAGGTGAATCAAAGGAGAGTCCCAGAAAACCTGTGACTGTTGAAGAAAATTCATCTGTGAATTTTTATATTCAAGGAGTCAGTATTT DEL 23.05 LQ 2 other , NM_001300780,NM_020796 , , , , , , , , , , , , , , , ; geneB_no_transcripts , , SJBALL270_D PTDSS2 chr11 460289 + coding SPOCK2 chr10 73832308 - coding > 1 7 187 48 0.000 0.000 53 37 0.125 0.015 188 194 TGCCGGCCAAGCCACCGGGCCGGGCGAGGGCCGCCGCAGCACCGAGTCCGAGGTCTACGACGACGGCACCAACACCTTCTTCTGGCGAGCCCACACCTTAACCGTGCTCTTCATCCTCACCTGTACGCTTGGCTATGTGACGCTGCTGGAGGAAACACCTCAGGACACGGCCTACAACACCAAGAGGAAGTGGAGGATGACTATATCAAGAGCTGGGAGGACAATCAGCAAGGAGATGAAG CTX 20.68 LQ 0 Fusion 0,0,0,0 NM_030783,NM_030783,, ,,, 2,2,, ,,, 284,284,, ,,, ,,, NM_001244950,NM_014767,NM_001244950,NM_014767 67,67,67,67 3,4,, tuple,tuple,tuple,tuple 199,199,199,199 1275,1275,1275,1275 65,65,, ,,, CRPSHRAGRGPPQHRVRGLRRRHQHLLLASPHLNRALHPHLYAWLCDAAGGNTSGHGLQHQEEVEDDYIKSWEDNQQGDE,CRPSHRAGRGPPQHRVRGLRRRHQHLLLASPHLNRALHPHLYAWLCDAAGGNTSGHGLQHQEEVEDDYIKSWEDNQQGDE,, PTDSS2:NM_030783[1,2]-SPOCK2:NM_001244950[3,11];PTDSS2:NM_030783[1,2]-SPOCK2:NM_014767[4,12];; geneB_transcripts=NM_001244950,NM_014767 ,,, 0,0,, SJBALL270_D USP12 chr13 27745729 - coding ELK4 chr1 205593020 - coding > 0 2 50 216 0.796 0.000 0 72 0.000 0.051 52 51 CCGGATGGAAATCCTAAAGACAGTCTCCAAATTCGCCTCCATGTGTACCATGCTCATTGCTATGGACAGTGCTATCACCCTGTGGCAGTTCCTTCTTCAGCTCCTGCAGAAGCCTCAGAACAAGCACATGATCTGTTGGACCTCTAATGATGGGCAGTTTAAGCTTTTGCAGGCAGAAGAGGTGGCTCGTCTCTGGGGGATTCGCAAGAACAAGCCTAACATGAATTATGACAAACTCAGCCGAGCCCTCAGATACTATTATGTAAA CTX 11.08 LQ 2 upTSS ,,2,2 NM_182488,NM_182488,, ,,, 1,1,, ,,, 48,48,, ,,, ,,, NM_001973,NM_021795,NM_001973,NM_021795 -2,-2,-2,-2 2,2,, tuple,tuple,tuple,tuple ,,, 1296,1218,1296,1218 20,20,, ,,, RMEILKTVSKFASMCTMLIAMDSAITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYV,RMEILKTVSKFASMCTMLIAMDSAITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYV,, USP12:NM_182488[1,1]-ELK4:NM_001973[2,5];USP12:NM_182488[1,1]-ELK4:NM_021795[2,3];; ERROR_geneA_inframe_failed_but_has_blat_hit=NM_182488;geneA_blat_issues=too_many_mismatches geneB_transcripts=NM_001973,NM_021795;geneb_utr_codons=3 ,,, 1,1,, SJBALL270_D LARP4B chr10 909683 - coding STAT5B chr17 40384159 - 5utr > 2 0 82 51 0.068 0.000 64 0 0.017 0.000 83 79 CAGGAGTCGGACCCAGCAGACATGAACGCTCTCGCTCTGGGTCCCTCAGAATATGACTCTCTGCCTGAAAATAGCGAGACAGATTGTAAACCATGGCTGTGTGGATACAAGCTCAGCAGCTCCAAGGAG CTX 6.70 LQ 2 upTSS 0,2 NM_015155, , 5, , 430, , , NM_012448,NM_012448 -3,-3 2, tuple,tuple , 2364,2364 29, , GVGPSRHERSRSGSLRI*LSA*K*RDRL*TMAVWIQAQQLQG, LARP4B:NM_015155[1,5]-STAT5B:NM_012448[2,19]; geneB_transcripts=NM_012448;geneb_utr_codons=4 , 2, SJBALL270_D HOOK3 chr8 42752331 + coding KAT6A chr8 41906821 - 5utr > 0 3 47 54 0.060 0.000 1 108 0.000 0.033 48 48 CGTAGAGTCGCTGGAGCGGGCGGAGCTGTGCGAGAGCCTCCTCACTTGGGCATAAGATGCACATTTTTCTGCTCTGGAGCCGGGAATGAAATATTCTTGAGT ITX 4.97 LQ 3 CLoss 0,0,0,0,0,0 NM_032410,NM_032410,NM_032410,,, ,,,,, 1,1,1,,, ,,,,, 57,57,57,,, ,,,,, ,,,,, NM_001099412,NM_001099413,NM_006766,NM_001099412,NM_001099413,NM_006766 -108,-108,-108,-108,-108,-108 3,3,2,,, tuple,tuple,tuple,tuple,tuple,tuple ,,,,, 6015,6015,6015,6015,6015,6015 18,18,18,,, ,,,,, *SRWSGRSCARASSLGHKMHIFLLWSRE*NILE,*SRWSGRSCARASSLGHKMHIFLLWSRE*NILE,*SRWSGRSCARASSLGHKMHIFLLWSRE*NILE,,, HOOK3:NM_032410[1,1]-KAT6A:NM_001099412[3,18];HOOK3:NM_032410[1,1]-KAT6A:NM_001099413[3,18];HOOK3:NM_032410[1,1]-KAT6A:NM_006766[2,17];;; geneB_transcripts=NM_001099412,NM_001099413,NM_006766;geneb_utr_codons=13 ,,,,, 2,2,2,,, SJBALL270_D AKAP17A,ASMT chrX 1786278 + intergenic NA chrX 1978684 + intergenic > 0 8 46 106 0.000 0.000 1 255 0.000 0.667 53 53 TCATAGGTCTGGGGGGTAGGACATAAACGTATGTTTTGGGGTCACCATTCAATCCATTACAGTTGTACCCAGTTCCCTCTGGAGGCTCTAGGGGAGGGTGCTTCCTGCCTCTCCCAGCTCCTGGGGGCTCCAGGCATCCCTGGGCTTGTGGCCGCATC DEL 3.45 LQ 0 other geneB_no_transcripts SJBALL270_D TGIF2,TGIF2-C20orf24,C20orf24 chr20 35207369 + coding ZNF217 chr20 52224747 + intergenic > 11 0 88 53 0.033 0.000 26 1 0.192 0.000 89 102 ACTGGCTGTACTTGCACCGCTACAACGCCTACCCCTCAGAGCAGGAGAAGCTGAGCCTTTCTGGACAGACCAACCTGTCAGTGCTGCAAGTTACTTCTACAGGCGCTTATACCGGAGGGTGTTCAGAGCAGGAAAGGAAGAGATCAAATCTGAA DEL 2.60 LQ 0 CLoss 0,0,0,0,0 NM_001199513,NM_001199514,NM_001199515,NM_001199535,NM_021809 ,,,, ,,,, ,,,, 192,192,192,192,192 ,,,, ,,,, NM_006526,NM_006526,NM_006526,NM_006526,NM_006526 ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ;;;; geneB_no_transcripts ,,,, ,,,, SJBALL270_D RPN1 chr3 128341007 - coding TOP2B chr3 25686961 - intron > 1 3 113 45 0.000 0.000 45 20 0.033 0.006 114 114 CCACCCTCAACAGTGGCAAGAAGAGCCTGGAGACTGAACACAAGGCCTTGACCAGTGAGATTGCACTGCTGCAGTCCAGGCTGAAGACAGAGGGCTCTGATCTGTGCGACAGAACTCTTTTTGATCAGAACAATGCTGCAAAAAAAGAAGAGTCAGAA DEL 1.67 LQ 3 Fusion 1 NM_002950 548 9 tuple 1641 36 112 NM_001068 24 2 tuple 70 4866 42 128 TLNSGKKSLETEHKALTSEIALLQSRLKTEGSDLCDRTLFDQNNAAKKEESE RPN1:NM_002950[1,9]-TOP2B:NM_001068[2,36] geneB_transcripts=NM_001068 TLFDQ 2 SJBALL270_D CCDC88C chr14 91875001 - coding TNFRSF1B chr1 12248849 + coding > 1 0 204 49 0.000 0.000 42 1 0.014 0.000 205 199 TTTTGGCCCGTTTGGAAGCGGCAGCCAGGACAACCTGACTATGTACATGGATTTAGTGGACGGCATCTTTTTGAACCAAATTATGCTGCAAATAGATCCCAGGCCCACAAATCAACGCATCAATAAGCACGTCAACAATGATGTGAACCTTCGCATTCAGAATTTGACCATCTTGGTGAGAAACATTAAGACCTACTACCAGGTGGCATTTACACCCTACGCCCCGGAGCCCGGGAGCACATGCCGG CTX 1.42 LQ 3 Fusion 1 NM_001080414 91 3 perfect 270 66 201 NM_001066 27 2 tuple 79 1386 67 202 FGPFGSGSQDNLTMYMDLVDGIFLNQIMLQIDPRPTNQRINKHVNNDVNLRIQNLTILVRNIKTYYQVAFTPYAPEPGSTCR CCDC88C:NM_001080414[1,3]-TNFRSF1B:NM_001066[2,10] geneB_transcripts=NM_001066;reannotated geneB from MIR7846,TNFRSF1B,MIR4632 to TNFRSF1B 1 SJBALL270_D GRM2 chr3 51743870 + intron PIAS4 chr19 4035726 + intron > 0 11 41 139 0.494 0.632 1 217 0.000 0.200 40 49 CCCCCCACACACCCACCCACACCCCACCCTCACACACACACCCGCACACATCCATACAGTCCACACCATAACACACACACACCCGCACACATCCATACAGTCCATACCATCACACACACCCACACACATCCATACAGTCCACACCATAACACACACACCCGCACACATCCATACAGTCCACACCGTCT CTX 1.22 LQ 0 other , NM_000839,NM_001130063 , , , 450, , , NM_015897,NM_015897 , , , 1143,1143 1533,1533 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_015897 , , SJBALL270_D BRD1 chr22 50181038 - coding CBFA2T3 chr16 88958897 - coding > 1 1 32 141 0.000 0.000 6 28 0.018 0.053 33 29 GGGAGGAGTCCCCAGGAAAGCGCCTGGACGCAGTGATGAACGGCAGCAGCCACTCACCAACAGCCATCAATGGTGCACCGTGCACACCCAACGGCTTCAGCAATGGCCCGGCCACCTCGTCCACAGCCTCCTTGTCCACACAGCACCTGCCCCCAGCCTGCGGGGCCCGG CTX 0.77 LQ 3 Fusion 1,1 NM_014577,NM_014577 822,822 7,7 tuple,tuple 2464,2464 9,9 31,31 NM_005187,NM_175931 127,41 4,3 blat,blat 380,122 1962,1704 11,11 35,35 EESPGKRLDAVMNGSSHSPTAINGAPCTPNGFSNGPATSSTASLSTQHLPPACGAR,EESPGKRLDAVMNGSSHSPTAINGAPCTPNGFSNGPATSSTASLSTQHLPPACGAR BRD1:NM_014577[1,7]-CBFA2T3:NM_005187[4,12];BRD1:NM_014577[1,7]-CBFA2T3:NM_175931[3,11] geneB_transcripts=NM_005187,NM_175931 V,V 2,2 SJBALL270_D ZFHX3 chr16 72821363 - coding YTHDF2 chr1 29069578 + coding > 0 2 49 87 0.000 0.508 1 61 0.000 0.011 52 49 CGCAGTCTGCCGCTCACTCAAACGACAGCCCCCCTCCCCCGCCACCGCCGCCGCCGATAAAGCATAACATGGATATTGGAACTTGGGATAACAAGGGTCCCGTTGCAAAAGCCCCCTCACAGGCTTTCGTTCAGAA CTX 0.72 LQ 2 Fusion 1,1,1,1,1,1 NM_001164766,NM_006885,NM_001164766,NM_006885,NM_001164766,NM_006885 2687,3601,2687,3601,2687,3601 9,10,9,10,9,10 tuple,tuple,tuple,tuple,tuple,tuple 8070,10812,8070,10812,8070,10812 12,12,12,12,12,12 40,40,40,40,40,40 NM_001172828,NM_001172828,NM_001173128,NM_001173128,NM_016258,NM_016258 216,216,266,266,266,266 3,3,5,5,4,4 tuple,tuple,tuple,tuple,tuple,tuple 646,646,796,796,796,796 1590,1590,1740,1740,1740,1740 15,15,15,15,15,15 47,47,47,47,47,47 QSAAHSNDSPPPPPPPPPIKHNMDIGTWDNKGPVAKAPSQAFVQ,QSAAHSNDSPPPPPPPPPIKHNMDIGTWDNKGPVAKAPSQAFVQ,QSAAHSNDSPPPPPPPPPIKHNMDIGTWDNKGPVAKAPSQAFVQ,QSAAHSNDSPPPPPPPPPIKHNMDIGTWDNKGPVAKAPSQAFVQ,QSAAHSNDSPPPPPPPPPIKHNMDIGTWDNKGPVAKAPSQAFVQ,QSAAHSNDSPPPPPPPPPIKHNMDIGTWDNKGPVAKAPSQAFVQ ZFHX3:NM_001164766[1,9]-YTHDF2:NM_001172828[3,4];ZFHX3:NM_006885[1,10]-YTHDF2:NM_001172828[3,4];ZFHX3:NM_001164766[1,9]-YTHDF2:NM_001173128[5,6];ZFHX3:NM_006885[1,10]-YTHDF2:NM_001173128[5,6];ZFHX3:NM_001164766[1,9]-YTHDF2:NM_016258[4,5];ZFHX3:NM_006885[1,10]-YTHDF2:NM_016258[4,5] geneB_transcripts=NM_001172828,NM_001173128,NM_016258 PP,PP,PP,PP,PP,PP 2,2,2,2,2,2 SJBALL270_D ECD chr10 74894361 - coding HNRNPH1 chr5 179044912 - coding > 1 2 111 42 0.009 0.481 42 26 0.052 0.003 112 112 CAAATATATTGGAATCCTATAGCTCCCAAGCTGGACTGGCAGGACCTGCTTCCAATCTTTTACAAAGCATGGGAGTGCAGCTGCCTGACAACACCGATCACAGACCAACAAGAATGTCTGATCACAGATACGGGGATGGTGGCTCTACTTTCC CTX 0.30 LQ 2 Fusion 1,1,1,1,1,1 NM_001135752,NM_001135753,NM_007265,NM_001135752,NM_001135753,NM_007265 672,596,639,672,596,639 15,13,14,15,13,14 tuple,tuple,tuple,tuple,tuple,tuple 2014,1786,1915,2014,1786,1915 35,35,35,35,35,35 109,109,109,109,109,109 NM_001257293,NM_001257293,NM_001257293,NM_005520,NM_005520,NM_005520 270,270,270,270,270,270 8,8,8,8,8,8 blat,blat,blat,blat,blat,blat 809,809,809,809,809,809 1350,1350,1350,1350,1350,1350 37,37,37,37,37,37 113,113,113,113,113,113 NILESYSSQAGLAGPASNLLQSMGVQLPDNTDHRPTRMSDHRYGDGGSTF,NILESYSSQAGLAGPASNLLQSMGVQLPDNTDHRPTRMSDHRYGDGGSTF,NILESYSSQAGLAGPASNLLQSMGVQLPDNTDHRPTRMSDHRYGDGGSTF,NILESYSSQAGLAGPASNLLQSMGVQLPDNTDHRPTRMSDHRYGDGGSTF,NILESYSSQAGLAGPASNLLQSMGVQLPDNTDHRPTRMSDHRYGDGGSTF,NILESYSSQAGLAGPASNLLQSMGVQLPDNTDHRPTRMSDHRYGDGGSTF ECD:NM_001135752[1,15]-HNRNPH1:NM_001257293[8,14];ECD:NM_001135753[1,13]-HNRNPH1:NM_001257293[8,14];ECD:NM_007265[1,14]-HNRNPH1:NM_001257293[8,14];ECD:NM_001135752[1,15]-HNRNPH1:NM_005520[8,14];ECD:NM_001135753[1,13]-HNRNPH1:NM_005520[8,14];ECD:NM_007265[1,14]-HNRNPH1:NM_005520[8,14] geneB_transcripts=NM_001257293,NM_005520 R,R,R,R,R,R 2,2,2,2,2,2 SJBALL270_D CCNT1 chr12 49108226 - coding HNRNPA2B1 chr7 26237352 - coding > 1 0 95 47 0.000 0.000 47 0 0.011 0.000 96 96 TTGAACACTTCAGCTCACAATTGACTATCAACACTGCTATAGTATACATGCATCGATTCTACATGATTCAGTCCTTCACACAGTTCCCTGGAAATAGAGAAAAGGAACAGTTCCGTAAGCTCTTTATTGGTGGCTTAAGCTT CTX 0.24 LQ 2 Fusion 1,1,1,1 NM_001240,NM_001277842,NM_001240,NM_001277842 82,82,82,82 2,2,2,2 tuple,tuple,tuple,tuple 243,243,243,243 30,30,30,30 94,94,94,94 NM_002137,NM_002137,NM_031243,NM_031243 3,3,15,15 2,2,3,3 tuple,tuple,tuple,tuple 7,7,43,43 1026,1026,1062,1062 31,31,31,31 95,95,95,95 EHFSSQLTINTAIVYMHRFYMIQSFTQFPGNREKEQFRKLFIGGLS,EHFSSQLTINTAIVYMHRFYMIQSFTQFPGNREKEQFRKLFIGGLS,EHFSSQLTINTAIVYMHRFYMIQSFTQFPGNREKEQFRKLFIGGLS,EHFSSQLTINTAIVYMHRFYMIQSFTQFPGNREKEQFRKLFIGGLS CCNT1:NM_001240[1,2]-HNRNPA2B1:NM_002137[2,11];CCNT1:NM_001277842[1,2]-HNRNPA2B1:NM_002137[2,11];CCNT1:NM_001240[1,2]-HNRNPA2B1:NM_031243[3,12];CCNT1:NM_001277842[1,2]-HNRNPA2B1:NM_031243[3,12] geneB_transcripts=NM_002137,NM_031243 ,,, 2,2,2,2 SJBALL270_D CSNK1G2 chr19 1941414 + 5utr TCF3 chr19 1650288 - 5utr > 0 2 42 166 0.000 0.012 1 51 0.000 0.022 42 45 GGCCGCCCAGACGCTGCCCGCGGGCCCGGCCACGGCGGAGCCCAGGGTTTCCAGGCCTGAGGTGCCCGCCCTTGCCCCAGGAGAATGAACCAGCCGCAGAGGATGGCGCCTGTGGGCACAGACAAGGAGCTCAGTGACCTCCTGGACTTCAGCATGATGTTCCCGCTGCCTGTCACCAACGGGAAGGGCCGGCCCGCCTCCCTGGCCGGGGA ITX 0.20 LQ 2 upTSS 0,2 NM_001319, , 1, , , , , NM_003200,NM_003200 -12,-12 2, blat,blat , 1965,1965 27, , GRPDAARGPGHGGAQGFQA*GARPCPRRMNQPQRMAPVGTDKELSDLLDFSMMFPLPVTNGKGRPASLAG, CSNK1G2:NM_001319[1,1]-TCF3:NM_003200[2,19]; geneB_transcripts=NM_003200;geneb_utr_codons=13 , 0, SJBALL270_D SCAF11 chr12 46357893 - coding NELL2 chr12 45004755 - coding > 0 1 38 96 0.050 0.000 0 38 0.000 0.100 38 38 ACCCTAAATATGGGAGATAAGAAGTATGAAGACATGGAAGAACATGATGAGTGTATCACAAATCAGCACAACTGTGATGAAAATGCTTTATGCTTCAACACTGTTGGAGGACACAACTGTGTTTGCAAGCCGGG DEL 0.18 LQ 2 Fusion 1,1,1,1,1 NM_004719,NM_004719,NM_004719,NM_004719,NM_004719 21,21,21,21,21 2,2,2,2,2 perfect,perfect,perfect,perfect,perfect 58,58,58,58,58 12,12,12,12,12 38,38,38,38,38 NM_001145107,NM_001145108,NM_001145109,NM_001145110,NM_006159 532,482,481,505,482 15,14,14,15,15 tuple,tuple,tuple,tuple,tuple 1595,1445,1442,1514,1445 2601,2451,2448,2520,2451 13,13,13,13,13 39,39,39,39,39 TLNMGDKKYEDMEEHDECITNQHNCDENALCFNTVGGHNCVCKP,TLNMGDKKYEDMEEHDECITNQHNCDENALCFNTVGGHNCVCKP,TLNMGDKKYEDMEEHDECITNQHNCDENALCFNTVGGHNCVCKP,TLNMGDKKYEDMEEHDECITNQHNCDENALCFNTVGGHNCVCKP,TLNMGDKKYEDMEEHDECITNQHNCDENALCFNTVGGHNCVCKP SCAF11:NM_004719[1,2]-NELL2:NM_001145107[15,21];SCAF11:NM_004719[1,2]-NELL2:NM_001145108[14,20];SCAF11:NM_004719[1,2]-NELL2:NM_001145109[14,20];SCAF11:NM_004719[1,2]-NELL2:NM_001145110[15,21];SCAF11:NM_004719[1,2]-NELL2:NM_006159[15,21] geneB_transcripts=NM_001145107,NM_001145108,NM_001145109,NM_001145110,NM_006159 ,,,, 0,0,0,0,0 SJBALL270_D SDF4 chr1 1158624 - coding CBFA2T3 chr16 88968064 - coding > 2 0 122 39 0.000 0.000 55 1 0.040 0.000 123 124 ACGGGGACGGTCACGTGTCTTGGGACGAGTATAAGGTGAAGTTTTTGGCGAGTAAAGGCCATAGCGAGAAGGAGGTTGCCGACGCCATCAGGCTCAACGAGGAACTCAAAGTGGACGAGGAAACCCCAGTGGACAGGAAAGCTAAGGCCTCAGCGATGCCGG CTX 0.13 LQ 3 Fusion 1,1,1,1 NM_016176,NM_016547,NM_016176,NM_016547 194,194,194,194 4,4,4,4 perfect,perfect,tuple,tuple 577,577,577,577 40,40,40,40 124,124,124,124 NM_005187,NM_005187,NM_175931,NM_175931 51,51,-10,-10 2,2,2,2 blat,blat,tuple,tuple 152,152,, 1962,1962,1704,1704 41,41,43,43 125,125,131,131 GDGHVSWDEYKVKFLASKGHSEKEVADAIRLNEELKVDEETPVDRKAKASAMP,GDGHVSWDEYKVKFLASKGHSEKEVADAIRLNEELKVDEETPVDRKAKASAMP,GDGHVSWDEYKVKFLASKGHSEKEVADAIRLNEELKVDEETPVDRKAKASAMP,GDGHVSWDEYKVKFLASKGHSEKEVADAIRLNEELKVDEETPVDRKAKASAMP SDF4:NM_016176[1,4]-CBFA2T3:NM_005187[2,12];SDF4:NM_016547[1,4]-CBFA2T3:NM_005187[2,12];SDF4:NM_016176[1,4]-CBFA2T3:NM_175931[2,11];SDF4:NM_016547[1,4]-CBFA2T3:NM_175931[2,11] geneB_transcripts=NM_005187,NM_175931;geneb_utr_codons=11 ,,PV,PV 2,2,2,2 SJBALL270_D NFATC2 chr20 50133322 - coding KAT6B chr10 76748773 + coding > 2 0 86 39 0.000 0.000 47 1 0.045 0.000 87 82 CAAGCCACATCACCGGGCCCACTATGAGACAGAAGGCAGCCGAGGGGCTGTCAAAGCTCCAACTGGAGGCCACCCTGTGGTTCAGGAAAAGCTTTGCCAGCAGAAGTATAATGTCTCCTG CTX 0.13 LQ 3 Fusion 1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1 NM_001136021,NM_001258292,NM_001258294,NM_001258295,NM_001258296,NM_001258297,NM_012340,NM_173091,NM_001136021,NM_001258292,NM_001258294,NM_001258295,NM_001258296,NM_001258297,NM_012340,NM_173091,NM_001136021,NM_001258292,NM_001258294,NM_001258295,NM_001258296,NM_001258297,NM_012340,NM_173091 425,425,226,226,226,226,445,445,425,425,226,226,226,226,445,445,425,425,226,226,226,226,445,445 3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3 perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect 1272,1272,675,675,675,675,1332,1332,1272,1272,675,675,675,675,1332,1332,1272,1272,675,675,675,675,1332,1332 27,27,27,27,27,27,27,27,27,27,27,27,27,27,27,27,27,27,27,27,27,27,27,27 84,84,84,84,84,84,84,84,84,84,84,84,84,84,84,84,84,84,84,84,84,84,84,84 NM_001256468,NM_001256468,NM_001256468,NM_001256468,NM_001256468,NM_001256468,NM_001256468,NM_001256468,NM_001256469,NM_001256469,NM_001256469,NM_001256469,NM_001256469,NM_001256469,NM_001256469,NM_001256469,NM_012330,NM_012330,NM_012330,NM_012330,NM_012330,NM_012330,NM_012330,NM_012330 663,663,663,663,663,663,663,663,554,554,554,554,554,554,554,554,846,846,846,846,846,846,846,846 13,13,13,13,13,13,13,13,13,13,13,13,13,13,13,13,13,13,13,13,13,13,13,13 tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 1987,1987,1987,1987,1987,1987,1987,1987,1660,1660,1660,1660,1660,1660,1660,1660,2536,2536,2536,2536,2536,2536,2536,2536 5673,5673,5673,5673,5673,5673,5673,5673,5346,5346,5346,5346,5346,5346,5346,5346,6222,6222,6222,6222,6222,6222,6222,6222 28,28,28,28,28,28,28,28,28,28,28,28,28,28,28,28,28,28,28,28,28,28,28,28 85,85,85,85,85,85,85,85,85,85,85,85,85,85,85,85,85,85,85,85,85,85,85,85 KPHHRAHYETEGSRGAVKAPTGGHPVVQEKLCQQKYNVS,KPHHRAHYETEGSRGAVKAPTGGHPVVQEKLCQQKYNVS,KPHHRAHYETEGSRGAVKAPTGGHPVVQEKLCQQKYNVS,KPHHRAHYETEGSRGAVKAPTGGHPVVQEKLCQQKYNVS,KPHHRAHYETEGSRGAVKAPTGGHPVVQEKLCQQKYNVS,KPHHRAHYETEGSRGAVKAPTGGHPVVQEKLCQQKYNVS,KPHHRAHYETEGSRGAVKAPTGGHPVVQEKLCQQKYNVS,KPHHRAHYETEGSRGAVKAPTGGHPVVQEKLCQQKYNVS,KPHHRAHYETEGSRGAVKAPTGGHPVVQEKLCQQKYNVS,KPHHRAHYETEGSRGAVKAPTGGHPVVQEKLCQQKYNVS,KPHHRAHYETEGSRGAVKAPTGGHPVVQEKLCQQKYNVS,KPHHRAHYETEGSRGAVKAPTGGHPVVQEKLCQQKYNVS,KPHHRAHYETEGSRGAVKAPTGGHPVVQEKLCQQKYNVS,KPHHRAHYETEGSRGAVKAPTGGHPVVQEKLCQQKYNVS,KPHHRAHYETEGSRGAVKAPTGGHPVVQEKLCQQKYNVS,KPHHRAHYETEGSRGAVKAPTGGHPVVQEKLCQQKYNVS,KPHHRAHYETEGSRGAVKAPTGGHPVVQEKLCQQKYNVS,KPHHRAHYETEGSRGAVKAPTGGHPVVQEKLCQQKYNVS,KPHHRAHYETEGSRGAVKAPTGGHPVVQEKLCQQKYNVS,KPHHRAHYETEGSRGAVKAPTGGHPVVQEKLCQQKYNVS,KPHHRAHYETEGSRGAVKAPTGGHPVVQEKLCQQKYNVS,KPHHRAHYETEGSRGAVKAPTGGHPVVQEKLCQQKYNVS,KPHHRAHYETEGSRGAVKAPTGGHPVVQEKLCQQKYNVS,KPHHRAHYETEGSRGAVKAPTGGHPVVQEKLCQQKYNVS NFATC2:NM_001136021[1,3]-KAT6B:NM_001256468[13,18];NFATC2:NM_001258292[1,3]-KAT6B:NM_001256468[13,18];NFATC2:NM_001258294[1,3]-KAT6B:NM_001256468[13,18];NFATC2:NM_001258295[1,3]-KAT6B:NM_001256468[13,18];NFATC2:NM_001258296[1,3]-KAT6B:NM_001256468[13,18];NFATC2:NM_001258297[1,3]-KAT6B:NM_001256468[13,18];NFATC2:NM_012340[1,3]-KAT6B:NM_001256468[13,18];NFATC2:NM_173091[1,3]-KAT6B:NM_001256468[13,18];NFATC2:NM_001136021[1,3]-KAT6B:NM_001256469[13,18];NFATC2:NM_001258292[1,3]-KAT6B:NM_001256469[13,18];NFATC2:NM_001258294[1,3]-KAT6B:NM_001256469[13,18];NFATC2:NM_001258295[1,3]-KAT6B:NM_001256469[13,18];NFATC2:NM_001258296[1,3]-KAT6B:NM_001256469[13,18];NFATC2:NM_001258297[1,3]-KAT6B:NM_001256469[13,18];NFATC2:NM_012340[1,3]-KAT6B:NM_001256469[13,18];NFATC2:NM_173091[1,3]-KAT6B:NM_001256469[13,18];NFATC2:NM_001136021[1,3]-KAT6B:NM_012330[13,18];NFATC2:NM_001258292[1,3]-KAT6B:NM_012330[13,18];NFATC2:NM_001258294[1,3]-KAT6B:NM_012330[13,18];NFATC2:NM_001258295[1,3]-KAT6B:NM_012330[13,18];NFATC2:NM_001258296[1,3]-KAT6B:NM_012330[13,18];NFATC2:NM_001258297[1,3]-KAT6B:NM_012330[13,18];NFATC2:NM_012340[1,3]-KAT6B:NM_012330[13,18];NFATC2:NM_173091[1,3]-KAT6B:NM_012330[13,18] geneB_transcripts=NM_001256468,NM_001256469,NM_012330 ,,,,,,,,,,,,,,,,,,,,,,, 1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1 SJBALL270_D PHF2 chr9 96339155 + coding MKRN1 chr7 140171814 - coding > 0 2 46 107 0.521 0.736 1 88 0.000 0.010 49 44 CGCTTCATGATCGAGTGCGATATCTGCAAGGACTGGTTCCACGGCAGGTATTTTATGCATGGGGTTTGTAAGGAAGGAGACAACTGTCGCTACTCGCATGACCTCTCTGACAGTCCGTATAGTGTAGTGTGCAAGTATTTTCAGCGAGGGT CTX 0.09 LQ 2 Fusion 1,1,1 NM_005392,NM_005392,NM_005392 18,18,18 1,1,1 blat,blat,blat 98,98,98 14,14,14 44,44,44 NM_001145125,NM_001291663,NM_013446 62,-2,62 2,4,2 tuple,tuple,tuple 186,,186 990,798,1449 15,18,15 45,54,45 RFMIECDICKDWFHGRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRG,RFMIECDICKDWFHGRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRG,RFMIECDICKDWFHGRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRG PHF2:NM_005392[1,1]-MKRN1:NM_001145125[2,5];PHF2:NM_005392[1,1]-MKRN1:NM_001291663[4,7];PHF2:NM_005392[1,1]-MKRN1:NM_013446[2,8] geneB_transcripts=NM_001145125,NM_001291663,NM_013446;geneb_utr_codons=3 ,RYF, 0,0,0 SJBALL270_D TNFRSF10B chr8 22880210 - coding MKL1 chr22 40859292 - 5utr > 0 1 37 105 0.000 0.000 1 35 0.000 0.045 37 35 CACTTGTTGAGCTCTGGAAAGTTCATGTATCTAGAAGTGCTACAGTTGAAACTCCAGCAGCGCCGGACCCGGGAAGAACTGGTGAGCCAAGGGATCATGCCGCCTTTGAAAAGTCCAGCCGCATTTCATGAGCAGAGAAG CTX 0.04 LQ 2 Fusion 1,1,1,1,1,1,1,1 NM_003842,NM_147187,NM_003842,NM_147187,NM_003842,NM_147187,NM_003842,NM_147187 433,404,433,404,433,404,433,404 9,10,9,10,9,10,9,10 tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 1297,1210,1297,1210,1297,1210,1297,1210 11,11,11,11,11,11,11,11 35,35,35,35,35,35,35,35 NM_001282660,NM_001282660,NM_001282661,NM_001282661,NM_001282662,NM_001282662,NM_020831,NM_020831 -20,-20,-19,-19,-19,-19,-19,-19 1,1,4,4,4,4,4,4 tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple ,,,,,,, 2796,2796,2646,2646,2397,2397,2796,2796 14,14,15,15,15,15,15,15 42,42,45,45,45,45,45,45 HLLSSGKFMYLEVLQLKLQQRRTREELVSQGIMPPLKSPAAFHEQR,HLLSSGKFMYLEVLQLKLQQRRTREELVSQGIMPPLKSPAAFHEQR,HLLSSGKFMYLEVLQLKLQQRRTREELVSQGIMPPLKSPAAFHEQR,HLLSSGKFMYLEVLQLKLQQRRTREELVSQGIMPPLKSPAAFHEQR,HLLSSGKFMYLEVLQLKLQQRRTREELVSQGIMPPLKSPAAFHEQR,HLLSSGKFMYLEVLQLKLQQRRTREELVSQGIMPPLKSPAAFHEQR,HLLSSGKFMYLEVLQLKLQQRRTREELVSQGIMPPLKSPAAFHEQR,HLLSSGKFMYLEVLQLKLQQRRTREELVSQGIMPPLKSPAAFHEQR TNFRSF10B:NM_003842[1,9]-MKL1:NM_001282660[1,12];TNFRSF10B:NM_147187[1,10]-MKL1:NM_001282660[1,12];TNFRSF10B:NM_003842[1,9]-MKL1:NM_001282661[4,14];TNFRSF10B:NM_147187[1,10]-MKL1:NM_001282661[4,14];TNFRSF10B:NM_003842[1,9]-MKL1:NM_001282662[4,15];TNFRSF10B:NM_147187[1,10]-MKL1:NM_001282662[4,15];TNFRSF10B:NM_003842[1,9]-MKL1:NM_020831[4,15];TNFRSF10B:NM_147187[1,10]-MKL1:NM_020831[4,15] geneB_transcripts=NM_001282660,NM_001282661,NM_001282662,NM_020831;geneb_utr_codons=13 VL,VL,VLQ,VLQ,VLQ,VLQ,VLQ,VLQ 0,0,0,0,0,0,0,0 SJBALL270_D KDM7A chr7 139876548 - coding MKRN1 chr7 140171814 - coding > 0 2 44 107 0.542 0.736 1 88 0.000 0.010 44 44 CGCTTCATGATCGAGTGCGATATCTGCAAGGACTGGTTCCACGGCAGGTATTTTATGCATGGGGTTTGTAAGGAAGGAGACAACTGTCGCTACTCGCATGACCTCTCTGACAGTCCGTATAGTGTAGTGTGCAAGTATTTTCAGCGAGGGT INS 0.03 LQ 3 Fusion 1,1,1 NM_030647,NM_030647,NM_030647 65,65,65 1,1,1 perfect,tuple,perfect 190,190,190 14,14,14 44,44,44 NM_001145125,NM_001291663,NM_013446 62,-2,62 2,4,2 tuple,tuple,tuple 186,,186 990,798,1449 15,18,15 45,54,45 RFMIECDICKDWFHGRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRG,RFMIECDICKDWFHGRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRG,RFMIECDICKDWFHGRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRG KDM7A:NM_030647[1,1]-MKRN1:NM_001145125[2,5];KDM7A:NM_030647[1,1]-MKRN1:NM_001291663[4,7];KDM7A:NM_030647[1,1]-MKRN1:NM_013446[2,8] geneB_transcripts=NM_001145125,NM_001291663,NM_013446;geneb_utr_codons=3 ,RYF, 0,0,0 SJBALL270_D HTT chr4 3109151 + coding ACSL1 chr4 185709885 - coding > 1 0 130 37 0.000 0.098 40 0 0.031 0.021 131 131 GTGAACCTTCTGCCGTGCCTGACTCGAACAAGCAAGAGACCCGAAGAATCAGTCCAGGAGACCTTGGCTGCAGCTGTTCCCAAAATTATGGCTTCTTTTGGCAATTTTGCAAATGACAATGAAATTAAGGGTCGTGGTGGTGCACGAAGATCCGCACTACTTGACAGCGC ITX 0.02 LQ 2 Fusion 1,1,1,1,1 NM_002111,NM_002111,NM_002111,NM_002111,NM_002111 252,252,252,252,252 ,,,, perfect,perfect,perfect,tuple,perfect ,,,, 42,42,42,42,42 128,128,128,128,128 NM_001286708,NM_001286710,NM_001286711,NM_001286712,NM_001995 66,66,66,-150,66 3,3,3,3,3 blat,blat,blat,tuple,blat 196,196,196,,196 2097,2097,1995,1584,2097 43,43,43,46,43 129,129,129,138,129 VNLLPCLTRTSKRPEESVQETLAAAVPKIMASFGNFANDNEIKGRGGARRSALLDS,VNLLPCLTRTSKRPEESVQETLAAAVPKIMASFGNFANDNEIKGRGGARRSALLDS,VNLLPCLTRTSKRPEESVQETLAAAVPKIMASFGNFANDNEIKGRGGARRSALLDS,VNLLPCLTRTSKRPEESVQETLAAAVPKIMASFGNFANDNEIKGRGGARRSALLDS,VNLLPCLTRTSKRPEESVQETLAAAVPKIMASFGNFANDNEIKGRGGARRSALLDS HTT:NM_002111[1,0]-ACSL1:NM_001286708[3,21];HTT:NM_002111[1,0]-ACSL1:NM_001286710[3,21];HTT:NM_002111[1,0]-ACSL1:NM_001286711[3,20];HTT:NM_002111[1,0]-ACSL1:NM_001286712[3,22];HTT:NM_002111[1,0]-ACSL1:NM_001995[3,21] geneB_transcripts=NM_001286708,NM_001286710,NM_001286711,NM_001286712,NM_001995;geneb_utr_codons=13 ,,,GRG, 0,0,0,0,0 SJBALL270_D TERF2IP chr16 75688295 + coding RHOT1 chr17 30521037 + coding > 0 1 36 90 0.000 0.000 0 36 0.007 0.029 36 36 CTTGTGGAAGCCACCCGGGAGTTTGAGGAGGTTGTGAGAGGGAGACACGAAACTACTTGGACTGTGCTTCGACGATTTGGTTATGATGATGACCTGGATTTGACACCTGAATATTTGTTCTCCCTGCTGA CTX 0.01 LQ 2 Fusion 1,1,1,1,1,1,1 NM_018975,NM_018975,NM_018975,NM_018975,NM_018975,NM_018975,NM_018975 266,266,266,266,266,266,266 2,2,2,2,2,2,2 perfect,perfect,perfect,perfect,perfect,perfect,perfect 795,795,795,795,795,795,795 11,11,11,11,11,11,11 35,35,35,35,35,35,35 NM_001033566,NM_001033567,NM_001033568,NM_001288754,NM_001288755,NM_001288758,NM_018307 260,133,260,260,239,133,260 11,12,11,11,11,12,11 blat,blat,blat,blat,blat,blat,blat 780,399,780,780,717,399,780 1980,1476,2076,1953,1794,1572,1857 12,12,12,12,12,12,12 36,36,36,36,36,36,36 LVEATREFEEVVRGRHETTWTVLRRFGYDDDLDLTPEYLFSLL,LVEATREFEEVVRGRHETTWTVLRRFGYDDDLDLTPEYLFSLL,LVEATREFEEVVRGRHETTWTVLRRFGYDDDLDLTPEYLFSLL,LVEATREFEEVVRGRHETTWTVLRRFGYDDDLDLTPEYLFSLL,LVEATREFEEVVRGRHETTWTVLRRFGYDDDLDLTPEYLFSLL,LVEATREFEEVVRGRHETTWTVLRRFGYDDDLDLTPEYLFSLL,LVEATREFEEVVRGRHETTWTVLRRFGYDDDLDLTPEYLFSLL TERF2IP:NM_018975[1,2]-RHOT1:NM_001033566[11,20];TERF2IP:NM_018975[1,2]-RHOT1:NM_001033567[12,20];TERF2IP:NM_018975[1,2]-RHOT1:NM_001033568[11,21];TERF2IP:NM_018975[1,2]-RHOT1:NM_001288754[11,20];TERF2IP:NM_018975[1,2]-RHOT1:NM_001288755[11,19];TERF2IP:NM_018975[1,2]-RHOT1:NM_001288758[12,21];TERF2IP:NM_018975[1,2]-RHOT1:NM_018307[11,19] geneB_transcripts=NM_001033566,NM_001033567,NM_001033568,NM_001288754,NM_001288755,NM_001288758,NM_018307 ,,,,,, 0,0,0,0,0,0,0 SJBALL270_D KIAA1033 chr12 105504982 + coding STAT5B chr17 40362320 - coding > 0 2 37 108 0.000 0.092 1 53 0.000 0.013 37 48 TGAGGAGTATACCTCTCAACTGAGAAGAATTGAGGACTGGAATGATGGGGCCATTTTGGGGTTTGTAAACAAGCAACAGGCCCATGACCTACTCATTAACAAGCCAGATGGGACCTTCCTCCTGAGATTCAGTGACTCAGAAATTGGCGGCATCAC CTX 0.00 LQ 2 Fusion 1,1 NM_001293640,NM_015275 48,48 2,2 tuple,tuple 141,141 11,11 36,36 NM_012448,NM_012448 592,592 15,15 tuple,tuple 1776,1776 2364,2364 15,15 46,46 EEYTSQLRRIEDWNDGAILGFVNKQQAHDLLINKPDGTFLLRFSDSEIGGI,EEYTSQLRRIEDWNDGAILGFVNKQQAHDLLINKPDGTFLLRFSDSEIGGI KIAA1033:NM_001293640[1,2]-STAT5B:NM_012448[15,19];KIAA1033:NM_015275[1,2]-STAT5B:NM_012448[15,19] geneB_transcripts=NM_012448 WND,WND 1,1 SJBALL270_D SFPQ chr1 35658306 - coding TMCC1 chr3 129579855 - intron > 0 1 34 137 0.000 0.000 1 41 0.000 0.032 34 41 GGACTCTTCCAAGCCCGTCGTTGCTCAGGGACCCTGACAACTTACTTCATGTGAAAACAAAGATGGTTGGAAGAGCATGCTTGTTCAAATCCTGAATAGTCCACACATTCCTAGATGGTCCTAGAACAATTGGAGATTCATACGCACACAAAGAACCTCAACCCTTACCTCACACCAGGTG CTX 0.00 LQ 3 CLoss , NM_005066,NM_005066 , , , 345,345 , , NM_001017395,NM_001128224 , , , , 1962,1620 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_001017395,NM_001128224;geneb_utr_codons=13 , , SJBALL270_D UBE2G1,LOC103021295 chr17 4269565 - coding TCF12 chr15 57212088 + 5utr > 0 2 30 189 0.000 0.000 1 52 0.000 0.048 30 27 GGCACTGCTACTGCGAAGACAGCTGGCAGGACCTGCTAGAAGTGGCCGAAGATGAATCCCCAGCAACAACGCATGGCCGCTATAGGGACCGACAAGGAGCTGAGCGACCTACTGGACTTCAGTGCGATGTTTTCCCCACCTGTTAATAGTGGGAAAACTAGACCAACTACACTGGGAAGCAGTCAATTCAGTGGATCAGGTATTGATGAAAGAGGA CTX 0.00 LQ 2 upTSS 0,0,0,0,2,2,2,2 NM_003342,NM_003342,NM_003342,NM_003342,,,, ,,,,,,, 1,1,1,1,,,, ,,,,,,, 46,46,46,46,,,, ,,,,,,, ,,,,,,, NM_003205,NM_207036,NM_207037,NM_207038,NM_003205,NM_207036,NM_207037,NM_207038 -7,-3,-7,-3,-7,-3,-7,-3 2,2,2,2,,,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple ,,,,,,, 2049,2121,2121,2049,2049,2121,2121,2049 12,16,12,16,,,, ,,,,,,, GTATAKTAGRTC*KWPKMNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTRPTTLGSSQFSGSGIDERG,GTATAKTAGRTC*KWPKMNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTRPTTLGSSQFSGSGIDERG,GTATAKTAGRTC*KWPKMNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTRPTTLGSSQFSGSGIDERG,GTATAKTAGRTC*KWPKMNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTRPTTLGSSQFSGSGIDERG,,,, UBE2G1:NM_003342[1,1]-TCF12:NM_003205[2,20];UBE2G1:NM_003342[1,1]-TCF12:NM_207036[2,21];UBE2G1:NM_003342[1,1]-TCF12:NM_207037[2,21];UBE2G1:NM_003342[1,1]-TCF12:NM_207038[2,20];;;; geneB_transcripts=NM_003205,NM_207036,NM_207037,NM_207038;geneb_utr_codons=8;geneb_utr_codons=4 ,,,,,,, 0,0,0,0,,,, SJBALL270_D SKI chr1 2236025 + coding DAZAP1 chr19 1417496 + coding > 2 0 79 32 0.000 0.484 50 0 0.064 0.000 80 76 CATGAGGTGGTCAAGATGCGCGTGAAGCAGGAGGAGAAGCTCAGCGCAGCCCTGCAGGCCAAGCGCAGCCTCCACCAGGAAGCTCTTCGTGGGCGGTCTTGACTGGA CTX 0.00 LQ 3 Fusion , NM_003036,NM_003036 , , , 1767,1767 , , NM_018959,NM_170711 , , , 30,30 1224,1137 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_018959,NM_170711 , , SJBALL270_D SPAG9 chr17 49156945 - coding KTN1 chr14 56137447 + coding > 1 1 174 36 0.000 0.000 35 112 0.013 0.000 175 175 AGCTCATCACCCAGTACGAGCGGGAGAAGGCGCTGCGCAAGCACGCTGAGGAGAAATTCATTGAATTTGAAGACTCTCAAGAACAGGAAAAAAAGGACTTACAGACCCGAGTGGAATCTTTAGAATCTCAAACAAGACAACTTGAGCTGAAAGCGAAAAACTATGCTGACCAGAAGTTATGGTGAATGGTTGCATGGATTTGAAAAAAAG CTX 0.00 LQ 3 Fusion 0,0,0,0,0,0,0,0,0,0,0,0,3,3,3,3 NM_001130527,NM_001130528,NM_003971,NM_001130527,NM_001130528,NM_003971,NM_001130527,NM_001130528,NM_003971,NM_001130527,NM_001130528,NM_003971,,,, ,,,,,,,,,,,,,,, 2,2,2,2,2,2,2,2,2,2,2,2,,,, ,,,,,,,,,,,,,,, 424,424,424,424,424,424,424,424,424,424,424,424,,,, ,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,, NM_001079521,NM_001079521,NM_001079521,NM_001079522,NM_001079522,NM_001079522,NM_001271014,NM_001271014,NM_001271014,NM_004986,NM_004986,NM_004986,NM_001079521,NM_001079522,NM_001271014,NM_004986 1090,1090,1090,1067,1067,1067,1090,1090,1090,1061,1061,1061,1090,1067,1090,1061 35,35,35,35,35,35,36,36,36,34,34,34,,,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 3268,3268,3268,3199,3199,3199,3268,3268,3268,3181,3181,3181,3268,3199,3268,3181 4074,4074,4074,3921,3921,3921,3990,3990,3990,3903,3903,3903,4074,3921,3990,3903 58,58,58,58,58,58,58,58,58,58,58,58,,,, ,,,,,,,,,,,,,,, SSSPSTSGRRRCASTLRRNSLNLKTLKNRKKRTYRPEWNL*NLKQDNLS*KRKTMLTRSYGEWLHGFEKK,SSSPSTSGRRRCASTLRRNSLNLKTLKNRKKRTYRPEWNL*NLKQDNLS*KRKTMLTRSYGEWLHGFEKK,SSSPSTSGRRRCASTLRRNSLNLKTLKNRKKRTYRPEWNL*NLKQDNLS*KRKTMLTRSYGEWLHGFEKK,SSSPSTSGRRRCASTLRRNSLNLKTLKNRKKRTYRPEWNL*NLKQDNLS*KRKTMLTRSYGEWLHGFEKK,SSSPSTSGRRRCASTLRRNSLNLKTLKNRKKRTYRPEWNL*NLKQDNLS*KRKTMLTRSYGEWLHGFEKK,SSSPSTSGRRRCASTLRRNSLNLKTLKNRKKRTYRPEWNL*NLKQDNLS*KRKTMLTRSYGEWLHGFEKK,SSSPSTSGRRRCASTLRRNSLNLKTLKNRKKRTYRPEWNL*NLKQDNLS*KRKTMLTRSYGEWLHGFEKK,SSSPSTSGRRRCASTLRRNSLNLKTLKNRKKRTYRPEWNL*NLKQDNLS*KRKTMLTRSYGEWLHGFEKK,SSSPSTSGRRRCASTLRRNSLNLKTLKNRKKRTYRPEWNL*NLKQDNLS*KRKTMLTRSYGEWLHGFEKK,SSSPSTSGRRRCASTLRRNSLNLKTLKNRKKRTYRPEWNL*NLKQDNLS*KRKTMLTRSYGEWLHGFEKK,SSSPSTSGRRRCASTLRRNSLNLKTLKNRKKRTYRPEWNL*NLKQDNLS*KRKTMLTRSYGEWLHGFEKK,SSSPSTSGRRRCASTLRRNSLNLKTLKNRKKRTYRPEWNL*NLKQDNLS*KRKTMLTRSYGEWLHGFEKK,,,, SPAG9:NM_001130527[1,2]-KTN1:NM_001079521[35,44];SPAG9:NM_001130528[1,2]-KTN1:NM_001079521[35,44];SPAG9:NM_003971[1,2]-KTN1:NM_001079521[35,44];SPAG9:NM_001130527[1,2]-KTN1:NM_001079522[35,43];SPAG9:NM_001130528[1,2]-KTN1:NM_001079522[35,43];SPAG9:NM_003971[1,2]-KTN1:NM_001079522[35,43];SPAG9:NM_001130527[1,2]-KTN1:NM_001271014[36,44];SPAG9:NM_001130528[1,2]-KTN1:NM_001271014[36,44];SPAG9:NM_003971[1,2]-KTN1:NM_001271014[36,44];SPAG9:NM_001130527[1,2]-KTN1:NM_004986[34,42];SPAG9:NM_001130528[1,2]-KTN1:NM_004986[34,42];SPAG9:NM_003971[1,2]-KTN1:NM_004986[34,42];;;; geneB_transcripts=NM_001079521,NM_001079522,NM_001271014,NM_004986 ,,,,,,,,,,,,,,, 0,0,0,0,0,0,0,0,0,0,0,0,,,, SJBALL270_D AFF3 chr2 100437211 - intron DACH1 chr13 72267756 - intron > 2 0 98 32 0.000 0.838 44 1 0.093 0.000 99 93 TTGATGATCCTGGCCCTGTGTGGGCCTAGGCTAATATGTATGTTTGTGACTTAATTTTGACAAAAAAGTTTTAAAAGTAAGAAAAAAATTTAAAAACCAGGCCGGGCGCGGTGGCTCACGCCTG CTX 0.00 LQ 3 other ,,,,, NM_001025108,NM_001025108,NM_001025108,NM_002285,NM_002285,NM_002285 ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, NM_004392,NM_080759,NM_080760,NM_004392,NM_080759,NM_080760 ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ;;;;; geneB_CDS_mapping_exception=NM_004392:-4;geneB_breakpoint_not_mapped_to_CDS=NM_004392;geneB_CDS_mapping_exception=NM_080759:-4;geneB_breakpoint_not_mapped_to_CDS=NM_080759;geneB_CDS_mapping_exception=NM_080760:-4;geneB_breakpoint_not_mapped_to_CDS=NM_080760 geneB_transcripts=NM_004392,NM_080759,NM_080760 ,,,,, ,,,,, SJBALL270_D SLC2A6 chr9 136338227 - coding DCAF5 chr14 69522329 - coding > 0 2 35 85 0.000 0.000 1 50 0.000 0.008 35 34 CCTTCGTCCTCACCAAGTCCTTCCTGCCAGTGGTGATCTGGAGCCCATACAAGCAGCCAGGATGTACTGGAGACCTCGACGGTCGGATTGAGGACGATTCCCGCTGCCTCTATACCCAT CTX 0.00 LQ 2 Fusion 1,1,1,1,1,1 NM_001145099,NM_017585,NM_001145099,NM_017585,NM_001145099,NM_017585 395,457,395,457,395,457 8,9,8,9,8,9 perfect,perfect,perfect,perfect,perfect,perfect 1182,1368,1182,1368,1182,1368 10,10,10,10,10,10 34,34,34,34,34,34 NM_001284206,NM_001284206,NM_001284207,NM_001284207,NM_003861,NM_003861 358,358,277,277,359,359 9,9,9,9,9,9 tuple,tuple,tuple,tuple,tuple,tuple 1072,1072,829,829,1075,1075 2826,2826,2583,2583,2829,2829 11,11,11,11,11,11 35,35,35,35,35,35 FVLTKSFLPVVIWSPYKQPGCTGDLDGRIEDDSRCLYTH,FVLTKSFLPVVIWSPYKQPGCTGDLDGRIEDDSRCLYTH,FVLTKSFLPVVIWSPYKQPGCTGDLDGRIEDDSRCLYTH,FVLTKSFLPVVIWSPYKQPGCTGDLDGRIEDDSRCLYTH,FVLTKSFLPVVIWSPYKQPGCTGDLDGRIEDDSRCLYTH,FVLTKSFLPVVIWSPYKQPGCTGDLDGRIEDDSRCLYTH SLC2A6:NM_001145099[1,8]-DCAF5:NM_001284206[9,9];SLC2A6:NM_017585[1,9]-DCAF5:NM_001284206[9,9];SLC2A6:NM_001145099[1,8]-DCAF5:NM_001284207[9,9];SLC2A6:NM_017585[1,9]-DCAF5:NM_001284207[9,9];SLC2A6:NM_001145099[1,8]-DCAF5:NM_003861[9,9];SLC2A6:NM_017585[1,9]-DCAF5:NM_003861[9,9] geneB_transcripts=NM_001284206,NM_001284207,NM_003861 ,,,,, 2,2,2,2,2,2 SJBALL270_D EIF2AK1 chr7 6077055 - coding SKIL chr3 170099025 + coding > 0 2 56 121 0.000 0.000 0 55 0.000 0.004 56 50 TGGTAGAAGGTGTGTTTTACATACATAACATGGGAATTGTGCACCGAGATCTGAAGACAGATGCACCATCAGGAATGGAATTACAGTCATGGTATCCTGTTATAAAGCAGGAAGGTGACCATGTTTCTCAGACACATTCATTTTTACACCCCAGCTACTACTTATACATGT CTX 0.00 LQ 2 Fusion 1,1,1,1,1,1,1,1 NM_001134335,NM_014413,NM_001134335,NM_014413,NM_001134335,NM_014413,NM_001134335,NM_014413 444,445,444,445,444,445,444,445 11,11,11,11,11,11,11,11 perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect 1329,1332,1329,1332,1329,1332,1329,1332 17,17,17,17,17,17,17,17 55,55,55,55,55,55,55,55 NM_001145097,NM_001145097,NM_001145098,NM_001145098,NM_001248008,NM_001248008,NM_005414,NM_005414 367,367,347,347,367,367,367,367 2,2,4,4,2,2,3,3 tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 1099,1099,1039,1039,1099,1099,1099,1099 1917,1917,1995,1995,2055,2055,2055,2055 18,18,18,18,18,18,18,18 56,56,56,56,56,56,56,56 VEGVFYIHNMGIVHRDLKTDAPSGMELQSWYPVIKQEGDHVSQTHSFLHPSYYLYM,VEGVFYIHNMGIVHRDLKTDAPSGMELQSWYPVIKQEGDHVSQTHSFLHPSYYLYM,VEGVFYIHNMGIVHRDLKTDAPSGMELQSWYPVIKQEGDHVSQTHSFLHPSYYLYM,VEGVFYIHNMGIVHRDLKTDAPSGMELQSWYPVIKQEGDHVSQTHSFLHPSYYLYM,VEGVFYIHNMGIVHRDLKTDAPSGMELQSWYPVIKQEGDHVSQTHSFLHPSYYLYM,VEGVFYIHNMGIVHRDLKTDAPSGMELQSWYPVIKQEGDHVSQTHSFLHPSYYLYM,VEGVFYIHNMGIVHRDLKTDAPSGMELQSWYPVIKQEGDHVSQTHSFLHPSYYLYM,VEGVFYIHNMGIVHRDLKTDAPSGMELQSWYPVIKQEGDHVSQTHSFLHPSYYLYM EIF2AK1:NM_001134335[1,11]-SKIL:NM_001145097[2,6];EIF2AK1:NM_014413[1,11]-SKIL:NM_001145097[2,6];EIF2AK1:NM_001134335[1,11]-SKIL:NM_001145098[4,8];EIF2AK1:NM_014413[1,11]-SKIL:NM_001145098[4,8];EIF2AK1:NM_001134335[1,11]-SKIL:NM_001248008[2,6];EIF2AK1:NM_014413[1,11]-SKIL:NM_001248008[2,6];EIF2AK1:NM_001134335[1,11]-SKIL:NM_005414[3,7];EIF2AK1:NM_014413[1,11]-SKIL:NM_005414[3,7] geneB_transcripts=NM_001145097,NM_001145098,NM_001248008,NM_005414 ,,,,,,, 2,2,2,2,2,2,2,2 SJBALL270_D TMEM203 chr9 140096949 + intergenic WDR43 chr2 29152510 + coding > 0 2 38 72 0.000 0.000 1 79 0.000 0.000 38 62 TACCCTAGTAGGGTTGCCCAATTCTGAACTACCAAAATGTGTGTGTCTATATCCATTGCTCCCAGACGAATAGCTTTCCAGTTCTTCTTACCCAGGGCTTAGAAAGTAACGATTTTGAAATGCTAAATAAAGTACTTCAAACTAGG CTX 0.00 LQ 3 NLoss 0 NM_015131 457 blat 1371 2034 geneA_no_transcript_IDs_found geneB_transcripts=NM_015131 SJBALL270_D MED13L chr12 116443663 - intron CUL1 chr7 148427054 + 5utr > 0 2 41 91 0.000 0.000 0 42 0.000 0.000 41 34 TTTGATAATTCTGATGACGACGAACTTGGGGTGAGTTTGCCTGCAATGAGATTTCATTCTCTACATTTAAAGGACATCCTTTCTGAGCTGCTGTGAATAAATTTGGAATGGTACTGTATATTTTC CTX 0.00 LQ 2 Fusion 1 NM_015335 824 13 tuple 2469 9 29 NM_003592 -53 2 tuple 2331 14 42 FDNSDDDELGVSLPAMRFHSLHLKDILSELL*INLEWYCIF MED13L:NM_015335[1,13]-CUL1:NM_003592[2,22] geneB_transcripts=NM_003592;geneb_utr_codons=13 VSLP 0 SJBALL270_D IER2 chr19 13261366 + 5utr NOP2 chr12 6677088 - coding > 0 2 62 39 0.000 0.000 1 124 0.000 0.000 62 62 CAAGGCCCAGTTCCTCGGATTGTTCCTGCGCAACTTCAGTTTCCCTTCCAGGCACGGGCAATTACCATGGGGCGCAAGTTGGACCCTACGAAGGAGAAGCG CTX 0.00 LQ 2 upTSS 0,0,0,0,0,2,2,2,2,2 NM_004907,NM_004907,NM_004907,NM_004907,NM_004907,,,,, ,,,,,,,,, 1,1,1,1,1,,,,, ,,,,,,,,, ,,,,,,,,, ,,,,,,,,, ,,,,,,,,, NM_001033714,NM_001258308,NM_001258309,NM_001258310,NM_006170,NM_001033714,NM_001258308,NM_001258309,NM_001258310,NM_006170 -1,-1,-1,-1,-1,-1,-1,-1,-1,-1 2,2,2,2,2,,,,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple ,,,,,,,,, 2427,2439,2538,1887,2427,2427,2439,2538,1887,2427 22,22,22,22,22,,,,, ,,,,,,,,, QGPVPRIVPAQLQFPFQARAITMGRKLDPTKEK,QGPVPRIVPAQLQFPFQARAITMGRKLDPTKEK,QGPVPRIVPAQLQFPFQARAITMGRKLDPTKEK,QGPVPRIVPAQLQFPFQARAITMGRKLDPTKEK,QGPVPRIVPAQLQFPFQARAITMGRKLDPTKEK,,,,, IER2:NM_004907[1,1]-NOP2:NM_001033714[2,16];IER2:NM_004907[1,1]-NOP2:NM_001258308[2,16];IER2:NM_004907[1,1]-NOP2:NM_001258309[2,17];IER2:NM_004907[1,1]-NOP2:NM_001258310[2,17];IER2:NM_004907[1,1]-NOP2:NM_006170[2,16];;;;; geneB_transcripts=NM_001033714,NM_001258308,NM_001258309,NM_001258310,NM_006170;geneb_utr_codons=2 ,,,,,,,,, 0,0,0,0,0,,,,, SJBALL270_D CRLF2 chrX 1314924 + coding CRLF2 chrX 1315004 - coding ? 0 0 29 78 0.275 0.000 1 1 0.000 0.000 37 37 CTTCACTCTCCATAATTTCCATAAAGACAGAAGGAGGAGAGACACCAACGCCTCCCAAACCAAAGCTGTCCAAATTTATTTTAATTTCCAGCCTGGCCATCCTTCTGATGGTGTC Internal_inv 0.00 LQ 3 Fusion unhandled orientation ? SJBALL270_D LINC00910 chr17 41428826 - intergenic LINC00854 chr17 41401194 - intergenic > 0 19 75 253 0.000 0.000 1 703 0.000 0.150 80 80 CCACAGTGAGAGGTGACCAGAAGACGAGAGTGTGAGCCCTCATTCACGCCCAGAGAAGGGCCGCTGGAGGGCTCCTTGGCCTAGCGGTAATGCCAGTGCCTGGGAAGGCCCTGGTTACTTAGCAGGCCTTGGTCTAGCGGTGGCCCCAGTGCCTGGGAAGGCACCCGTTACTTAGCAGACCCGGAAAGGGAATCTCCCTCTCTCCAGGGGAGACAGAGAACGCTCCGCTCCACCACCTCTTGTGGGAGGTCTGACATTAGCCAGGCCGGCCCGCAGTCATCCGGAGGCTCCAACGTCTGTCTCCCTGTGATGCTGTGCTTCAGTGGTCACGC read_through 70.30 RT 0 other geneB_no_transcripts SJEPD040_D C11orf95 chr11 63531978 - coding RELA chr11 65430242 - intron > 1855 406 293 630 0.000 0.000 21541 3580 0.627 0.162 293 337 CTATGACCCGCGGGGGAACCGGCTGGTGTGCATGGCCTGTGGCCGGGCACTGCCCAGCCTGCACCTGGACGACATCCGTGCCCACGTGCTGGAGGTGCACCCTGGCTCCCTGGGGCTCAGCGGCCCCCAGCGCAGTGCCCTGCTGCAGGCCTGGGGGGGCCAGCCCGAGGCGCTGTCTGAGCTCACCCAGTCCCCACCAGGCGATGACCTCGCCCCCCAGGACCTGACCGGAAAGAGCCGGGACTCGGCCTCCGCTGCTGGAGCCCCCTCCTCTCAGGATCTCAGCCCCCCAGCCGGGGTCCCGGGGGCGGGGCCGGGGTCGCAGCTGGGCCCGCGGCGTGAGCCCCCGCGCCGCTTTCCGCCCCTTCCTGCGCCGACGGGCGCTGCGCAGGGAGCGGTCGGCCTGCCGGATGGTGGCGCGGGGCGGGGCAGGCGGGGAGGGGTCTGACTCAGTTTCCCCTCTGGGTGGAGGGGGTGGCCCTTGACTCAGCATCCTCCCTGGGTGGGGGAGCAGAGGGAACCTTGACTCAGTTTCCCTCCACACCGTCCATGGGGGCAGCTCTGGCTTCGTTTCCCTATTAGGGGAGAACGCATCTGATTCAGTTTCCTCTCTGGAGGGAGGTGGGGCGTGCCCTCCCTCAGTTTTCCTTAAGAAAGTACAACAGGCCCTGATTCAGCTTCCCTCTGGAGAAGAAGGATTCCTTACCCCGTTTTCCCTCAAGAAGCAGGTGTTTCTGGTTCCTTTCCTCCACCCCTTAGTTTCACCGCAGGTTCTAGGGAGCAGGTCCTGACTCAGTTCCCCTGGGAGGGAGCCTGGCTTCTCCTCTCCGTGGAGAGCAGATTCCTCCTTGTGAGAATGGGCATTGGGTGTGTGCTGACCCTGATCTCCCTCCCCTTTCAGAACTGTTCCCCCTCATCTTCCCGGCAGAGCCAGCCCAGGCCTCTGGCCCCTATGTGGAGATCATTG INS 25121.00 HQ 0 CLoss 0,0,0,0,0,0,0,0 NM_001144936,NM_001144936,NM_001144936,NM_001144936,,,, ,,,,,,, 4,4,4,4,,,, ,,,,,,, 1117,1117,1117,1117,,,, ,,,,,,, ,,,,,,, NM_001145138,NM_001243984,NM_001243985,NM_021975,NM_001145138,NM_001243984,NM_001243985,NM_021975 3,3,3,3,3,3,3,3 2,2,2,2,,,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 7,7,7,7,7,7,7,7 1647,1449,1347,1656,1647,1449,1347,1656 300,300,300,300,,,, ,,,,,,, L*PAGEPAGVHGLWPGTAQPAPGRHPCPRAGGAPWLPGAQRPPAQCPAAGLGGPARGAV*AHPVPTRR*PRPPGPDRKEPGLGLRCWSPLLSGSQPPSRGPGGGAGVAAGPAA*APAPLSAPSCADGRCAGSGRPAGWWRGAGQAGRGLTQFPLWVEGVALDSASSLGGGAEGTLTQFPSTPSMGAALASFPY*GRTHLIQFPLWREVGRALPQFSLRKYNRP*FSFPLEKKDSLPRFPSRSRCFWFLSSTP*FHRRF*GAGPDSVPLGGSLASPLRGEQIPPCENGHWVCADPDLPPLSELFPLIFPAEPAQASGPYVEII,L*PAGEPAGVHGLWPGTAQPAPGRHPCPRAGGAPWLPGAQRPPAQCPAAGLGGPARGAV*AHPVPTRR*PRPPGPDRKEPGLGLRCWSPLLSGSQPPSRGPGGGAGVAAGPAA*APAPLSAPSCADGRCAGSGRPAGWWRGAGQAGRGLTQFPLWVEGVALDSASSLGGGAEGTLTQFPSTPSMGAALASFPY*GRTHLIQFPLWREVGRALPQFSLRKYNRP*FSFPLEKKDSLPRFPSRSRCFWFLSSTP*FHRRF*GAGPDSVPLGGSLASPLRGEQIPPCENGHWVCADPDLPPLSELFPLIFPAEPAQASGPYVEII,L*PAGEPAGVHGLWPGTAQPAPGRHPCPRAGGAPWLPGAQRPPAQCPAAGLGGPARGAV*AHPVPTRR*PRPPGPDRKEPGLGLRCWSPLLSGSQPPSRGPGGGAGVAAGPAA*APAPLSAPSCADGRCAGSGRPAGWWRGAGQAGRGLTQFPLWVEGVALDSASSLGGGAEGTLTQFPSTPSMGAALASFPY*GRTHLIQFPLWREVGRALPQFSLRKYNRP*FSFPLEKKDSLPRFPSRSRCFWFLSSTP*FHRRF*GAGPDSVPLGGSLASPLRGEQIPPCENGHWVCADPDLPPLSELFPLIFPAEPAQASGPYVEII,L*PAGEPAGVHGLWPGTAQPAPGRHPCPRAGGAPWLPGAQRPPAQCPAAGLGGPARGAV*AHPVPTRR*PRPPGPDRKEPGLGLRCWSPLLSGSQPPSRGPGGGAGVAAGPAA*APAPLSAPSCADGRCAGSGRPAGWWRGAGQAGRGLTQFPLWVEGVALDSASSLGGGAEGTLTQFPSTPSMGAALASFPY*GRTHLIQFPLWREVGRALPQFSLRKYNRP*FSFPLEKKDSLPRFPSRSRCFWFLSSTP*FHRRF*GAGPDSVPLGGSLASPLRGEQIPPCENGHWVCADPDLPPLSELFPLIFPAEPAQASGPYVEII,,,, C11orf95:NM_001144936[1,4]-RELA:NM_001145138[2,11];C11orf95:NM_001144936[1,4]-RELA:NM_001243984[2,11];C11orf95:NM_001144936[1,4]-RELA:NM_001243985[2,12];C11orf95:NM_001144936[1,4]-RELA:NM_021975[2,11];;;; geneB_transcripts=NM_001145138,NM_001243984,NM_001243985,NM_021975 ,,,,,,, 0,0,0,0,,,, SJEPD040_D C11orf95 chr11 63531978 - coding RELA chr11 65429676 - coding > 1855 107 120 588 0.000 0.000 8276 2165 0.627 0.010 120 165 TGTCTGAGCTCACCCAGTCCCCACCAGGCGATGACCTCGCCCCCCAGGACCTGACCGGAAAGAGCCGGGACTCGGCCTCCGCTGCTGGAGCCCCCTCCTCTCAGGATCTCAGCCCCCCAGCCGGGGTCCCGGGGGCGGGGCCGGGGTCGCAGCTGGGCCCGCGGCAACTGTTCCCCCTCATCTTCCCGGCAGAGCCAGCCCAGGCCTCTGGCCCCTATGTGGAGATCATTGAGCAGCCCAAGCAGCGGGGCATGCGCTTCCGCTACAAGTGCGAGGGGCGCTCCGCGGGCAGCATCCCAGGCGAGAGGAGCACAGATACCACCAAGACCCACCCCACCATCAAGATCAATGGCTACACAGGACCAGGGACAGTGCGCATCTCCCTGGTCACCAAGGACCCTCCTCACCGGCCTCACCCCCACGAGCTTGTAGGAAAGGACTGCCGGGATGGCTTCTATGAGGCTGAGCTCTGCCCGGACCGCTGCATCCACAGTTTCCAGAACCTGGGAATCCAGTGTGTGAAGAAGCGGGACCTGGAGCAGGCTATCAGTCAGCGCATCCAGACCAACAACAACCCCTTCCAAGTTCCTATAGAAGAGCAGCGTGGGGACTACGACCTGAATGCTGTGCGGCTCTGCTTCCAGGTGACAGTGCGGGACCCATCAGGCAGGCCCCTCCGCCTGCCGCCTGTCCTTTCTCATCCCATCTTTGACAATCGTGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAG INS 16577.01 HQ 0 Fusion 1,1,1 NM_001144936,NM_001144936,NM_001144936 373,373,373 4,4,4 tuple,tuple,tuple 1117,1117,1117 38,38,38 118,118,118 NM_001243984,NM_001243985,NM_021975 3,3,3 2,2,2 blat,blat,blat 8,8,8 1449,1347,1656 55,55,55 167,167,167 SELTQSPPGDDLAPQDLTGKSRDSASAAGAPSSQDLSPPAGVPGAGPGSQLGPRQLFPLIFPAEPAQASGPYVEIIEQPKQRGMRFRYKCEGRSAGSIPGERSTDTTKTHPTIKINGYTGPGTVRISLVTKDPPHRPHPHELVGKDCRDGFYEAELCPDRCIHSFQNLGIQCVKKRDLEQAISQRIQTNNNPFQVPIEEQRGDYDLNAVRLCFQVTVRDPSGRPLRLPPVLSHPIFDNRAPNTAELKICR,SELTQSPPGDDLAPQDLTGKSRDSASAAGAPSSQDLSPPAGVPGAGPGSQLGPRQLFPLIFPAEPAQASGPYVEIIEQPKQRGMRFRYKCEGRSAGSIPGERSTDTTKTHPTIKINGYTGPGTVRISLVTKDPPHRPHPHELVGKDCRDGFYEAELCPDRCIHSFQNLGIQCVKKRDLEQAISQRIQTNNNPFQVPIEEQRGDYDLNAVRLCFQVTVRDPSGRPLRLPPVLSHPIFDNRAPNTAELKICR,SELTQSPPGDDLAPQDLTGKSRDSASAAGAPSSQDLSPPAGVPGAGPGSQLGPRQLFPLIFPAEPAQASGPYVEIIEQPKQRGMRFRYKCEGRSAGSIPGERSTDTTKTHPTIKINGYTGPGTVRISLVTKDPPHRPHPHELVGKDCRDGFYEAELCPDRCIHSFQNLGIQCVKKRDLEQAISQRIQTNNNPFQVPIEEQRGDYDLNAVRLCFQVTVRDPSGRPLRLPPVLSHPIFDNRAPNTAELKICR C11orf95:NM_001144936[1,4]-RELA:NM_001243984[2,11];C11orf95:NM_001144936[1,4]-RELA:NM_001243985[2,12];C11orf95:NM_001144936[1,4]-RELA:NM_021975[2,11] geneB_blat_issues=too_many_gaps;geneB_anchor_fail_but_found_blat_hit=NM_001145138 geneB_transcripts=NM_001145138,NM_001243984,NM_001243985,NM_021975 AGVPGAGPGSQLGPRQ,AGVPGAGPGSQLGPRQ,AGVPGAGPGSQLGPRQ 2,2,2 SJEPD040_D C11orf95 chr11 63531978 - coding RELA chr11 65429559 - coding > 1842 167 214 794 0.000 0.000 5045 3680 0.627 0.014 214 260 GCCCACGTGCTGGAGGTGCACCCTGGCTCCCTGGGGCTCAGCGGCCCCCAGCGCAGTGCCCTGCTGCAGGCCTGGGGGGGCCAGCCCGAGGCGCTGTCTGAGCTCACCCAGTCCCCACCAGGCGATGACCTCGCCCCCCAGGACCTGACCGGAAAGAGCCGGGACTCGGCCTCCGCTGCTGGAGCCCCCTCCTCTCAGGATCTCAGCCCCCCAGCCGGGGTCCCGGGGGCGGGGCCGGGGTCGCAGCTGGGCCCGCGGCAGCCAGCCCAGGCCTCTGGCCCCTATGTGGAGATCATTGAGCAGCCCAAGCAGCGGGGCATGCGCTTCCGCTACAAGTGCGAGGGGCGCTCCGCGGGCAGCATCCCAGGCGAGAGGAGCACAGATACCACCAAGACCCACCCCACCATCAAGATCAATGGCTACACAGGACCAGGGACAGTGCGCATCTCCCTGGTCACCAAGGACCCTCCTCACCGGCCTCACCCCCACGAGCTTGTAGGAAAGGACTGCCGGGATGGCTTCTATGAGGCTGAGCTCTGCCCGGACCGCTGCATCCACAGTTTCCAGAACCTGGGAATCCAGTGTGTGAAGAAGCGGGACCTGGAGCAGGCTATCAGTCAGCGCATCCAGACCAACAACAACCCCTTCCAAGTTCCTATAGAAGAGCAGCGTGGGGACTACGACCTGAATGCTGTGCGGCTCTGCTTCCAGGTGACAGTGCGGGACCCATCAGGCAGGCCCCTCCGCCTGCCGCCTGTCCTTTCTCATCCCATCTTTGACAATCGTGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTGAACCGAAACTCTGGCAGCTGCCTCGGTGGGGATGAGATCTTCCTACTGTGTGACAAGGTGCAGAAAGAGGACATTGAGGTGTATTTCACGGGACCAGGCTGGGAGGCCCGAGGCTCCTTTTCGCAAGCTGATGTGCACCGACAAGTGGCCATTGTGTTCCGGACCCCTCCCTACGCAGACCCCAGCCTGCAGGCCCCTGTGCGTGTCTCCATGCAGCTGCGGCGGCCTTCCG INS 10292.15 HQ 0 Fusion 1,1,1 NM_001144936,NM_001144936,NM_001144936 373,373,373 4,4,4 tuple,tuple,tuple 1117,1117,1117 70,70,70 212,212,212 NM_001243984,NM_001243985,NM_021975 12,12,12 3,3,3 blat,blat,blat 35,35,35 1449,1347,1656 87,87,87 261,261,261 AHVLEVHPGSLGLSGPQRSALLQAWGGQPEALSELTQSPPGDDLAPQDLTGKSRDSASAAGAPSSQDLSPPAGVPGAGPGSQLGPRQPAQASGPYVEIIEQPKQRGMRFRYKCEGRSAGSIPGERSTDTTKTHPTIKINGYTGPGTVRISLVTKDPPHRPHPHELVGKDCRDGFYEAELCPDRCIHSFQNLGIQCVKKRDLEQAISQRIQTNNNPFQVPIEEQRGDYDLNAVRLCFQVTVRDPSGRPLRLPPVLSHPIFDNRAPNTAELKICRVNRNSGSCLGGDEIFLLCDKVQKEDIEVYFTGPGWEARGSFSQADVHRQVAIVFRTPPYADPSLQAPVRVSMQLRRPS,AHVLEVHPGSLGLSGPQRSALLQAWGGQPEALSELTQSPPGDDLAPQDLTGKSRDSASAAGAPSSQDLSPPAGVPGAGPGSQLGPRQPAQASGPYVEIIEQPKQRGMRFRYKCEGRSAGSIPGERSTDTTKTHPTIKINGYTGPGTVRISLVTKDPPHRPHPHELVGKDCRDGFYEAELCPDRCIHSFQNLGIQCVKKRDLEQAISQRIQTNNNPFQVPIEEQRGDYDLNAVRLCFQVTVRDPSGRPLRLPPVLSHPIFDNRAPNTAELKICRVNRNSGSCLGGDEIFLLCDKVQKEDIEVYFTGPGWEARGSFSQADVHRQVAIVFRTPPYADPSLQAPVRVSMQLRRPS,AHVLEVHPGSLGLSGPQRSALLQAWGGQPEALSELTQSPPGDDLAPQDLTGKSRDSASAAGAPSSQDLSPPAGVPGAGPGSQLGPRQPAQASGPYVEIIEQPKQRGMRFRYKCEGRSAGSIPGERSTDTTKTHPTIKINGYTGPGTVRISLVTKDPPHRPHPHELVGKDCRDGFYEAELCPDRCIHSFQNLGIQCVKKRDLEQAISQRIQTNNNPFQVPIEEQRGDYDLNAVRLCFQVTVRDPSGRPLRLPPVLSHPIFDNRAPNTAELKICRVNRNSGSCLGGDEIFLLCDKVQKEDIEVYFTGPGWEARGSFSQADVHRQVAIVFRTPPYADPSLQAPVRVSMQLRRPS C11orf95:NM_001144936[1,4]-RELA:NM_001243984[3,11];C11orf95:NM_001144936[1,4]-RELA:NM_001243985[3,12];C11orf95:NM_001144936[1,4]-RELA:NM_021975[3,11] geneB_blat_issues=too_many_gaps;geneB_anchor_fail_but_found_blat_hit=NM_001145138 geneB_transcripts=NM_001145138,NM_001243984,NM_001243985,NM_021975 AGVPGAGPGSQLGPRQ,AGVPGAGPGSQLGPRQ,AGVPGAGPGSQLGPRQ 0,0,0 SJEPD040_D MYO19 chr17 34889780 - 5utr RBM6 chr3 50005964 + coding > 29 35 274 532 0.000 0.000 1622 1566 0.155 0.076 274 273 CGCTCTTGCCCCTCCTCTTTTCTCTCCTGCCCGTGTTCTTCCCGCCGCCTGACCTGGCCCGCCCGCCTTTCCAGTCTGGCCGGGCGGGGGCCTGAAGCACGGCGGCTCGGGCCGTGGGACCGTGTTCACACCCTTTCCAGAAATTCTTGGCTGGTAACCGCGAAACCGACTGGAGCAGGAGCTGGGAGAACTGGAGAAAACTGCTCTAATCTCACTTGACTCCAGCTAGGAGCTGATGCTGCATCGTAATAACATTTGCAGAGCGCTTTCACAGTCACAGCTTTCTGGACGTGAAGAGCAGAGTTCAGATGCTGGTCTGTTTAAAGAAGAAGGCGGTCTGGACTTTCTTGGGCGGCAAGACACCGATTACAGAAGCATGGAGTACCGTGATGTGGATCATAGGCTGCCAGGAAGCCAGATGTTTGGCTATGGCCAGAGCAAGTCTTTTCCAGAGGGCAAAACTGCCCGAGATGCCCAACGGGACCTTCAGGATCAAGATTATAGGACCGGCCCAAGTGAGGAGAAACCCAGCAGGCTTATTCGATTAAGTGGGGTACCTGAAGATGCCACAAAAGAAGAGATTCTTAATGCTTTTCGGACTCCTGATGGCATGCCTGTAAAGAACTTGCAGTTGAAGGAGTATAACACAGGTTACGACTATGGCTATGTCTGCGTGGAGTTTTCACTCTTGGAAGATGCCATCGGATGCATGGAGGCCAACCAGGGAACTCTAATGATCCAGGACAAAGAAGTTACCCTGGAGTATGTATCAAGCCTGGATTTTTGGTACTGCAAACGATGTAAGGCAAACATTG CTX 2435.82 HQ 0 NLoss 0,0,0,3 NM_001033580,NM_001163735,NM_025109, ,,, 3,3,3, ,,, ,,, ,,, ,,, NM_005777,NM_005777,NM_005777,NM_005777 369,369,369,369 3,3,3, blat,blat,blat,blat 1106,1106,1106,1106 3372,3372,3372,3372 91,91,91, ,,, ALAPPLFSPARVLPAA*PGPPAFPVWPGGGLKHGGSGRGTVFTPFPEILGW*PRNRLEQELGELEKTALISLDSS*ELMLHRNNICRALSQSQLSGREEQSSDAGLFKEEGGLDFLGRQDTDYRSMEYRDVDHRLPGSQMFGYGQSKSFPEGKTARDAQRDLQDQDYRTGPSEEKPSRLIRLSGVPEDATKEEILNAFRTPDGMPVKNLQLKEYNTGYDYGYVCVEFSLLEDAIGCMEANQGTLMIQDKEVTLEYVSSLDFWYCKRCKANI,ALAPPLFSPARVLPAA*PGPPAFPVWPGGGLKHGGSGRGTVFTPFPEILGW*PRNRLEQELGELEKTALISLDSS*ELMLHRNNICRALSQSQLSGREEQSSDAGLFKEEGGLDFLGRQDTDYRSMEYRDVDHRLPGSQMFGYGQSKSFPEGKTARDAQRDLQDQDYRTGPSEEKPSRLIRLSGVPEDATKEEILNAFRTPDGMPVKNLQLKEYNTGYDYGYVCVEFSLLEDAIGCMEANQGTLMIQDKEVTLEYVSSLDFWYCKRCKANI,ALAPPLFSPARVLPAA*PGPPAFPVWPGGGLKHGGSGRGTVFTPFPEILGW*PRNRLEQELGELEKTALISLDSS*ELMLHRNNICRALSQSQLSGREEQSSDAGLFKEEGGLDFLGRQDTDYRSMEYRDVDHRLPGSQMFGYGQSKSFPEGKTARDAQRDLQDQDYRTGPSEEKPSRLIRLSGVPEDATKEEILNAFRTPDGMPVKNLQLKEYNTGYDYGYVCVEFSLLEDAIGCMEANQGTLMIQDKEVTLEYVSSLDFWYCKRCKANI, MYO19:NM_001033580[1,3]-RBM6:NM_005777[3,21];MYO19:NM_001163735[1,3]-RBM6:NM_005777[3,21];MYO19:NM_025109[1,3]-RBM6:NM_005777[3,21]; geneB_breakpoint_not_mapped_to_CDS=NM_001167582 geneB_transcripts=NM_001167582,NM_005777;geneB_intronic=NM_001167582 ,,, 1,1,1, SJEPD040_D SIK2 chr11 111487083 + coding CTSC chr11 88045725 - coding > 21 8 242 324 0.000 0.000 932 266 0.452 0.147 242 240 CGGATGGCCCGAGGCACTTGCAGCGCGGGCCGGTCCGGGTGGGGTTCTACGACATCGAGGGCACGCTGGGCAAGGGCAACTTCGCTGTGGTGAAGCTGGGGCGGCACCGGATCACCAAGACGGAGGTGGCAATAAAAATAATCGATAAGTCTCAGCTGGATGCAGTGAACCTTGAGAAAATCTACCGAGAAGTACAAATAATGAAAATGTTAGACCACCCTCACATAATCAAACTTTATCAGTATAAAGAAGAGGGCAGCAAGGTGACCACTTACTGCAACGAGACAATGACTGGGTGGGTGCATGATGTGTTGGGCCGGAACTGGGCTTGTTTCACCGGAAAGAAGGTGGGAACTGCCTCTGAGAATGTGTATGTCAACACAGCACACCTTAAGAATTCTCAGGAAAAGTATTCTAATAGGCTCTACAAGTATGATCACAACTTTGTGAAAGCTATCAATGCCATTCAGAAGTCTTGGACTGCAACTACATACATGGAATATGAGACTCTTACCCTGGGAGATATGATTAGGAGAAGTGGTGGCCACAGTCGAAAAATCCCAA ITX 2396.00 HQ 0 Fusion 1 NM_015191 85 2 perfect 252 79 241 NM_001814 107 3 tuple 80 242 DGPRHLQRGPVRVGFYDIEGTLGKGNFAVVKLGRHRITKTEVAIKIIDKSQLDAVNLEKIYREVQIMKMLDHPHIIKLYQYKEEGSKVTTYCNETMTGWVHDVLGRNWACFTGKKVGTASENVYVNTAHLKNSQEKYSNRLYKYDHNFVKAINAIQKSWTATTYMEYETLTLGDMIRRSGGHSRKIP SIK2:NM_015191[1,2]-CTSC:NM_001814[3,7] geneB_CDS_mapping_exception=NM_001814:-2 geneB_transcripts=NM_001814 2 SJEPD040_D NCOA1 chr2 24777769 - intergenic DDX43 chr6 74111581 + coding > 10 11 153 355 0.000 0.000 1197 486 0.750 0.297 154 153 ATTAAACCTCCGCTCCTAAACTCCTCGTGTGTGTCTGTGTCCTAAATTTTCCTGGTGTGAGATGACAAACTCCGGGTATTTACCCCAGACAACGTAGACGCTTCATATTGGGAACCTCGTCTGGGATACCAAGGTACAACATTCATCAAAACGATACTGCATTCCAACCTTCTGTTGGAAAAGATGGAAGCACAGATAACAATGTTGTTGCAGGAGATCGGCCATTGATAGATTGGGATCAAATTAGAGAGGAAGGTTTGAAATGGCAAAAAACAAAGTGGGCAGGAAAGAAAATTTTAATATAACGTGGGATGACTTGAAGGATGGGGAGAAACGACCTATCCCCAATCCTACCTGCACATTTGATGACGCCTTTCAATGTTATCCTGAGGTTATGGAAAACATTAAAAAGGCAGGTTTTCAAAAGCCAACACCTATTCAGTCACAGGCATGGCCCATTGTGTTGCAAGGAATAGATCTTATAGGAGTAGCCCAGACTGGAACAGG CTX 1683.00 HQ 1 NLoss 3,3 , , , , , , , NM_018665,NM_018665 146,146 , tuple,blat 437,437 1947,1947 , , , ; geneA_no_transcript_IDs_found;ERROR_geneB_multiple_matching_frames=NM_018665 geneB_transcripts=NM_018665 , , SJEPD040_D C11orf95 chr11 63531978 - coding RELA chr11 65430307 + 5utr > 1860 0 293 48 0.000 0.724 13899 1 0.627 0.000 294 294 CTATGACCCGCGGGGGAACCGGCTGGTGTGCATGGCCTGTGGCCGGGCACTGCCCAGCCTGCACCTGGACGACATCCGTGCCCACGTGCTGGAGGTGCACCCTGGCTCCCTGGGGCTCAGCGGCCCCCAGCGCAGTGCCCTGCTGCAGGCCTGGGGGGGCCAGCCCGAGGCGCTGTCTGAGCTCACCCAGTCCCCACCAGGCGATGACCTCGCCCCCCAGGACCTGACCGGAAAGAGCCGGGACTCGGCCTCCGCTGCTGGAGCCCCCTCCTCTCAGGATCTCAGCCCCCCAGCCGGGGTCCCGGGGGCGGGGCCGGGGTCGCAGCTGGGCCCGCGGCGTGAGCCCCCGCGCCGCTTTCCGCCCCTTCCTGCGCCGACGGGCGCTGCGCAGGGAGCGGTCGGCCTGCCGGATGGTGGCGCGGGCCCAGCTGCGACCCCGGCCCCGCCCCCGGGACCCCGGCTGGGGGGCTGAGATCCT ITX 1410.53 HQ 0 CLoss ,,, NM_001144936,NM_001144936,NM_001144936,NM_001144936 ,,, ,,, ,,, 1117,1117,1117,1117 ,,, ,,, NM_001145138,NM_001243984,NM_001243985,NM_021975 ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001145138,NM_001243984,NM_001243985,NM_021975;geneB_transcript_strand_disagree=NM_001145138;geneb_utr_codons=2;geneB_transcript_strand_disagree=NM_001243984;geneB_transcript_strand_disagree=NM_001243985;geneB_transcript_strand_disagree=NM_021975 ,,, ,,, SJEPD040_D STT3A chr11 125461748 - intergenic MS4A6E chr11 60107380 + coding > 1 27 90 587 0.000 0.000 28 1301 0.100 0.548 90 90 AATAGGCCCTTGCTCCAAGTCCCAGTAACTCGGAATGCGGAGCCGCTCGTCTCCCGTCTTTTTTAAGGCACTTCCACTCCCTGCGCGCCTGCCTAGCTGTGCTCACTGCTGTGCTGCAGTGGAAACAGACTGTCTGACTTCCCTGGTTACTCATGTCCTCAAAGACGACTCATGATGCTGGATATGAAGAACTATTGACTTCTTGGGAAAAAACGGAGAAATATTAATTGGAAAGTTGATTTTTATGATAATATGGAAAACCTAACCATTATAAAAAAGCAAACTTGAGTTTCCTAAATGTAAGCATTTAAAGTAATGCATATTTGTTTTAAAAAATTATTTCGCTGTCATTTATGATATGTGTTCATTGGGGATCTCTTGGTTTGCCTGATACTGACTTCAGCAAAAGCACAGGGCTGTAAATTACCATTTACTAGACTAGCCAAATAGTCTTAGACATTTCCCAGAAAACTAGGCAGAATGATGATTCAATGGATCACAGTGAGGCAAAGGATACAGCTTTTTCTTATACTCCTCAATTGTGAACAGGAGTTAACTGATTTGCTGTGGTGCGCAGACGCTTTTATCACAGGTGCTACTGATTTATCCCATGTATTTTACTCATTAGTGCATAAAGGCAAACCCCATAATGAAGTCTCCTAGTGTATGAAAGTAGC ITX 1329.00 HQ 0 NLoss 3 NM_139249 132 blat 396 444 geneA_no_transcript_IDs_found geneB_transcripts=NM_139249 SJEPD040_D RBM6 chr3 50000120 + coding MYO19 chr17 34884034 - coding > 17 39 145 375 0.000 0.000 1009 1298 0.006 0.271 146 143 GGAGGAGCGGGCCGTGGAGGCTTCGCCGCCTAGGTACTGCTATAACCAGAATTTGGTAGAAAAAGGATTTACTTGTTGGGGCCCTCTTGATAAAAAGAGATGTGGGGGGATTCTCGACCTGCTAACAGAACTGGACCTTTTCGGTCAGTGGCCACAATCCGGGGTCTGATGGCCAAGCCAGGGAGTACCTCAGAGAAGACCTGCAGGAGTTCCTGGGTGGGGAGGTCCTGCTGTACAAACTGGATGACCTCACCAGGGTGAATCCTGTGACACTAGAGACAGTCCTGAGGTGCCTGCAGGCCCGGTACATGGCAGACACATTCTACACCAATGCTGGCTGCACCCTGGTAGCCTTGAACCCCTTCAAGCCTGTTCCTCAGCTCTACTCGCCCGAGCTAATGAGAGAGTACCATGCTGCGCCTCAGCCCCAGAAACTGAAGCCCCATGTGTTCACTGTGGGTGAACAGACCTACAGGAATGTCAAGAGCCTGATTGAACCAGCCAACCAGTCTATTGTTG CTX 1298.13 HQ 0 Fusion ,,,,, NM_001167582,NM_001167582,NM_001167582,NM_005777,NM_005777,NM_005777 ,,,,, ,,,,, ,,,,, ,,,44,44,44 ,,,,, ,,,,, NM_001033580,NM_001163735,NM_025109,NM_001033580,NM_001163735,NM_025109 ,,,,, ,,,,, ,,,,, 13,13,13,13,13,13 954,2913,2313,954,2913,2313 ,,,,, ,,,,, ,,,,, ;;;;; geneB_blat_issues=too_many_mismatches;geneB_anchor_fail_but_found_blat_hit=NM_001033580;geneB_anchor_fail_but_found_blat_hit=NM_001163735;geneB_anchor_fail_but_found_blat_hit=NM_025109 geneB_transcripts=NM_001033580,NM_001163735,NM_025109 ,,,,, ,,,,, SJEPD040_D NCOA1 chr2 24777768 - intergenic DDX43 chr6 74115401 + coding > 6 14 194 436 0.000 0.000 203 1053 0.750 0.169 195 193 GAGCTGTTTTCCTTTCTTTTTCTTTCTCTTTCTCTTGCCTATTAAACCTCCGCTCCTAAACTCCTCGTGTGTGTCTGTGTCCTAAATTTTCCTGGTGTGAGATGACAAACTCCGGGTATTTACCCCAGACAACGTAGACGCTTCATATTGGGAACCTCGTCTGGGATACCAAGGTACAACATTCATCAAAACGGAAAGAAAATTTTAATATAACGTGGGATGACTTGAAGGATGGGGAGAAACGACCTATCCCCAATCCTACCTGCACATTTGATGACGCCTTTCAATGTTATCCTGAGGTTATGGAAAACATTAAAAAGGCAGGTTTTCAAAAGCCAACACCTATTCAGTCACAGGCATGGCCCATTGTGTTGCAAGGAATAGATCTTATAGGAGTAGCCCAGACTGGAACAGGAAAGACATTGTGTTATTTAATGCCTGGATTTATTCATCTGGTCCTTCAACCCAGCCTTAAAGGTCAAAGGAATAGACCCGGCATGTTAGTTCTAACTCCCACTCGGGAATTAGCACTTCAAGTAGAAGGAGAATGTTGCAAATATTCATATAAAGGGCTTCGGAGTGTTTGTGTATATGGTGGTGGAAATAGAGATGAACAAATAGAAGAGCT CTX 1256.00 HQ 1 NLoss 3 NM_018665 217 tuple 651 1947 geneA_no_transcript_IDs_found geneB_transcripts=NM_018665 SJEPD040_D ARHGEF12 chr11 120207982 + coding LOC283194 chr11 58726919 - intron > 3 13 498 350 0.008 0.000 216 575 0.061 0.278 499 499 CGAGCAGCCGGCAGCCCCAGATAGAGAGCCGGGAGGGAGGGCCCCGGCCCTTGCCGCGGCGGGGAGTTCGAGGCCCCGAGACTCCGGAGGAGGAGCCGACACCCGTCCGTGAGCTGATCCCGCCCCAGCCCCGGCGGGAGTCCCGGGTCCCCTTCCCACTGCGCGCGGATTTCCCTCTCTGAGGAAGTTTATCCTTGTGCCTTCTGGAGGATTTCTCTCTAGCTCGACTCACTCTGGACTGACTCGCTCCCTGGCTTTCTCAGTTCGTTTTGGGAGATAACTTGTTTTGCTCCAAGCCGCATCCGTTGACCCCTTACAGTCGGATGGTCTAGATGACTGAATGGAGTTTTGAGTTGGACTTTTGTGTCCCTGACGGAGTTGGGCCTGATCCCAGAGCACTGGGGGTGGGGAGGAGGTGTTACTGTAAAATGCAAGTTGGATAAAAGGAGGACCTCTCGCCAAGGGCCCCAATGAGTGGCACACAGTCTACTATCACCGACAGATGGGGTCTCTATCTGGCCAGCGCCATGTTGCCTGAACACTTGAAGACAAAGAAAAGGGAAGAAGAGGCAGGGCGCCGTAGCTCACGCCTGTAATCACCGCACTTTCTGAGGGCGAGGAGGGTGGATCACGAGGTCAGGAGTTCAAGACCAGCTTGGCCAAGATGGTGAAACCTCGTCTCCACTAAAAAAAATACAAAAAAAAAAAAATTTAGCCGGGCCTGTTGGTGGGCTCCTGAAATCCCAGCCACTCAGGAGGCTGAGGTAGAGAGCTGCTTGAACCCGGGAGGCAGAGGGTGCAGTGAGCCGACATCGCCCCACTCCACTCCAGCATGGGCAACAGAGCGAG ITX 665.08 HQ 1 CLoss , NM_001198665,NM_015313 , , , 30,30 , , , , , , , , , , , ; geneB_no_transcripts , , SJEPD040_D NCK2 chr2 106471746 + coding PARM1 chr4 75937633 + coding > 8 3 457 408 0.000 0.000 371 136 0.062 0.107 457 456 CCTCCGGCTCCGCGGGCGGCCCACGGCGAGATTTCATGTGTTCTTTGTATACAAGCGACGTCCCAGATTATAATTCTCTGCTGAGATTTGAGTTGGATTTGAGGATTTGGAGAATCCCTGCAGCTTTGTAACTTCAGAGGTGTAATTAGCTGAAAACATCATCGTTTTGAAGAGTTCTGCGTTTTGCCAGTCACCTCTCAACTGTGTGCCAAAGAAGGACTCCATGAAAGATGACAGAAGAAGTTATTGTGATAGCCAAGTGGGACTACACCGCCCAGCAGGACCAGGAGCTGGACATCAAGAAGAACGAGCGGCTGTGGTTGCTGGACGACTCCAAGACGTGGTGGCGGGTGAGGAACGCGGCCAACAGGACGGGCTATGTACCGTCCAACTACGTGGAGCGGAAGAACAGCCTGAAGAAGGGCTCCCTCGTGAAGAACCTGAAGGACACACTAGGATGGAGGGTACAGAGTCTGCCTACATCAGCTCCTTTGTCTGTTTCTCTTCCGACAAACATTGTACCACCGACCACCATCTGGACTAGCTCTCCACAAAACACTGATGCAGACACTGCCTCCCCATCCAACGGCACTCACAACAACTCGGTGCTCCCAGTTACAGCATCAGCCCCAACATCTCTGCTTCCTAAGAACATGTCCATAGAGTCCAGAGAAGAGGAGATCACCAGCCCAGGTTCGAATTGGGAAGGCACAAACACAGACCCCTCACCTTCTGGGTTCTCGTCAACAAGCGGTGGAGTCCACTTAACAACCACGTTGGAGGAACACAGCTTGGGCACTCCTGAAGCAGGCGTGGCAGCTACACTGTCGCAGTCCGCTGCTGAGCCTCCCACACTCATCTCCCG CTX 603.55 HQ 0 Fusion 1,1,1 NM_001004720,NM_001004722,NM_003581 76,76,76 2,3,3 tuple,tuple,tuple 226,226,226 150,150,150 454,454,454 NM_015393,NM_015393,NM_015393 15,15,15 2,2,2 tuple,tuple,tuple 44,44,44 933,933,933 151,151,151 455,455,455 SGSAGGPRRDFMCSLYTSDVPDYNSLLRFELDLRIWRIPAAL*LQRCN*LKTSSF*RVLRFASHLSTVCQRRTP*KMTEEVIVIAKWDYTAQQDQELDIKKNERLWLLDDSKTWWRVRNAANRTGYVPSNYVERKNSLKKGSLVKNLKDTLGWRVQSLPTSAPLSVSLPTNIVPPTTIWTSSPQNTDADTASPSNGTHNNSVLPVTASAPTSLLPKNMSIESREEEITSPGSNWEGTNTDPSPSGFSSTSGGVHLTTTLEEHSLGTPEAGVAATLSQSAAEPPTLIS,SGSAGGPRRDFMCSLYTSDVPDYNSLLRFELDLRIWRIPAAL*LQRCN*LKTSSF*RVLRFASHLSTVCQRRTP*KMTEEVIVIAKWDYTAQQDQELDIKKNERLWLLDDSKTWWRVRNAANRTGYVPSNYVERKNSLKKGSLVKNLKDTLGWRVQSLPTSAPLSVSLPTNIVPPTTIWTSSPQNTDADTASPSNGTHNNSVLPVTASAPTSLLPKNMSIESREEEITSPGSNWEGTNTDPSPSGFSSTSGGVHLTTTLEEHSLGTPEAGVAATLSQSAAEPPTLIS,SGSAGGPRRDFMCSLYTSDVPDYNSLLRFELDLRIWRIPAAL*LQRCN*LKTSSF*RVLRFASHLSTVCQRRTP*KMTEEVIVIAKWDYTAQQDQELDIKKNERLWLLDDSKTWWRVRNAANRTGYVPSNYVERKNSLKKGSLVKNLKDTLGWRVQSLPTSAPLSVSLPTNIVPPTTIWTSSPQNTDADTASPSNGTHNNSVLPVTASAPTSLLPKNMSIESREEEITSPGSNWEGTNTDPSPSGFSSTSGGVHLTTTLEEHSLGTPEAGVAATLSQSAAEPPTLIS NCK2:NM_001004720[1,2]-PARM1:NM_015393[2,4];NCK2:NM_001004722[1,3]-PARM1:NM_015393[2,4];NCK2:NM_003581[1,3]-PARM1:NM_015393[2,4] geneB_transcripts=NM_015393 ,, 2,2,2 SJEPD040_D LOC642236 chr9 68413311 - intergenic PTGER4P2-CDK2AP2P2 chr9 66493091 + intergenic > 6 10 287 231 0.000 0.498 223 421 0.027 0.239 288 293 GAGCTCCTGTCAACCCCAGAGTTTCAGCAAAAGGCACAACCTTTCCTAGATCCGGCGCCACTGGGGGAGCTGAAGGACGTGGAAGAGCCCGCTTTGCTGGAACCACTCCTCAGCCAGGAAGAACACAGGGCTCTGCTGGAGGAGCAGGTTGGGGCGGGTTTGGGGCAGGGTGGCGGCCTCTCTTTCGCGGTGAACCTCAGGCTTGGTGTGGAGAGGCGTGTCTTCCCTTCCAGCTGACCTGCCTAGGATCCCTGAGTTCCAGGTCCAGCGAGAGACTCCACACAGAGGAGGGCGTGGAAAACAATTTGGTGGTTCCTCACAGAAACACACAGAGAAACAAGAGCTGCTGGCTTCCGGGTTCTCCTGGGCTGGCGCGGTACGTCCCGGAATCGCAGGCGCGCATCCCTTCCCGCCTGAGGGCCTGCCTGGCCGTGACTCCCACCCCTCTTCTCCTCCGAAGAGACGTCGGGGCCGCTCCAGGGGCCGTCCGCAGCCACCGGGGATGGGGCTGAGGGTCGGTTCC ITX 438.48 HQ 0 other geneB_no_transcripts SJEPD040_D LOC101929295 chr11 94888016 + intron RAB39A chr11 107828960 - intron ? 12 3 227 180 0.009 0.000 555 180 0.400 0.176 322 322 CAGCAGACAAACACGTGAACAAAGGTCTTTGCATCATAGACAATGTAAAGGATTAAGTGCTGTGCTTTTAGATATGCATACACATAAACATCTCTCTGGCATCTAGGGTCCTGGAACCCTCCTCCAAATGCTCCTGCAGGTGGCAACAGAGGCCAAGGAAAGGTGAAGCATTCTGGCAGAAGTTCTGGAGACAGATGGGAAGCTGAGCTCCCTGAGGGCAGGGGCAAGGTGACTTGAAGAAAGCCAGGCCAGAGGGAGCATTTTATGCATCCATCATTCGTAATCCAGAAAGAAACGGTTTAGACAATTTTAGTGTAACCATTTATGTCTATTTCCCTCTAGGCTTTGAAAGTCTCCCTGAATGGGTGGGGTGCAGTGGCTCTCACCTGTAATCCCAGCAATTTGGGAGGCCAAGGTGGGCAGATCACCTGAGGTCAGGAATTCGAGACCAACCTGGCCCACATGGTGAAACCCCGTCTCTACCAAAAATACATAAAATAGC ITX 366.71 HQ 0 other unhandled orientation ? SJEPD040_D PTN chr7 137028185 - 5utr GRM3 chr7 86432756 - intron > 97 88 200 572 0.000 0.000 3362 3168 0.004 0.484 297 297 CCCAGAGCAGAGGAAAATCCAAAGTGGAGAGAGGGGAAGAAAGAGACCAGTGAGTCATCCGTCCAGAAGGCGGGGAGAGCAGCAGCGGCCCAAGCAGGAGAGCCCCAGAGCAGAGGAAAATCCAAAGTGGAGAGAGGGGAAGAAAGAGACCAGTGAGTCATCCGTCCAGAAGGCGGGGAGAGCAGCAGCGGCCCAAGCAGGAGCTGCAGCGAGCCGGGTACCTGGACTCAGCGGTAGCAACCTCGCCCCTTGCAACAAAGGCAGACTGAGCGCCAGAGAGGACGTTTCCAACTCAAATTTAGCCATTGGATTAATTCAGCCTTAAAAGACCCTTGCAACAGAAAAAGGCAGAAAAGGAATGTGACAAATTTCTCTACTGAAAAGAAAGGATTCAAATTGAGGAAGGATTCATAACAGGCAATGTACCCCTACAGTCCTCCAGGAAGTCGTAATTTGATGGGAGACAAAGAAACATAGCCAAGGATACAATTTTAAGGTCACCTTGAATCCTTCCTGGAAAAAAGCAGGTCATAAATAATAATGGTTGTTGGAGAAAGGTCTCTAGGAAAGATGAAGAACTTTTAAATTCCTAGAAGCATCTTAGAAAAGATAACACAAAAACTTTATTTAATGTAAAAATAAGAGCTGAGAGTCAGTTAAATAAACATTGTTAACAGTTGAAATTTTCTGGATTATCTGCATTTATTGTTACTTTCCTTTACTTTTTAATTTAATTTTAGATCAAGGAGTTACATGTACATATATGTTATGTGGGTATATTGTCTGATGTTACATTCCTTTAAATCTTGTATAAATAATCTTTCTTAAAACTACTTTGTAAACTTAGGTAATATAGACTTAATGCACAT DEL 316.80 HQ 0 other NM_002825 NM_000840 geneB_no_inframe_contig_found geneB_transcripts=NM_000840;geneB_transcript_strand_disagree=NM_000840 SJEPD040_D LOC642236 chr9 68413311 - intergenic NA chr9 45355938 + intergenic > 6 5 287 212 0.000 0.500 223 219 0.027 0.367 288 293 GAGCTCCTGTCAACCCCAGAGTTTCAGCAAAAGGCACAACCTTTCCTAGATCCGGCGCCACTGGGGGAGCTGAAGGACGTGGAAGAGCCCGCTTTGCTGGAACCACTCCTCAGCCAGGAAGAACACAGGGCTCTGCTGGAGGAGCAGGTTGGGGCGGGTTTGGGGCAGGGTGGCGGCCTCTCTTTCGCGGTGAACCTCAGGCTTGGTGTGGAGAGGCGTGTCTTCCCTTCCAGCTGACCTGCCTAGGATCCCTGAGTTCCAGGTCCAGCGAGAGACTCCACACAGAGGAGGGCGTGGAAAACAATTTGGTGGTTCCTCACAGAAACACACAGAGAAACAAGAGCTGCTGGCTTCCGGGTTCTCCTGGGCTGGCGCGGTACGTCCCGGAATCGCAGGCGCGCATCCCTTCCCGCCTGAGGGCCTGCCTGGCCGTGACTCCCGCCCCTCTTCCCCTCCGAAGAGACGTCGGGGCCCCTCCAGGGGCCGTCCGCAGCCACCGGGGATGGG ITX 236.41 HQ 0 other geneB_no_transcripts SJEPD040_D CYP2U1 chr4 108878686 - intergenic ZNF846 chr19 9858732 - intergenic ? 8 14 213 409 0.000 0.663 275 660 0.400 0.085 213 213 CTGATTTTTAGAATTTTCAGCTTTTCTTCTCTGGTTTCTCCCCATCTTTGTGGTTTTATCTACCTTTGGTCCTTGATGATGGTGAATACAGATGGGATTTTGGTGTGGATGTCCTTTCTGTTTGTTAGTTTTCTTTCTAACAGTCAGAACCCTCAGCTGCATGTCTGTTGGAGTTTGCTGAGGGTCCACTCCAGATCCTGTTTGCCTGGGTGGACATGGAAAAATGCTTATCATCACTGGCTATCAGAGAAATGCAAATCAAAACCACAATGAGATACCATCTCACACCAGTTAGAATGGTGATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGGGGATGTGGAGAAATAGGACCGCTTTTACACTGTTGGTGGGAGTGTAAACTAGTTCAACCATTGTGGAAGACAGTGTGGCAATTCCTCAAGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGCATATACCCAAAGGATTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCAGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAACGTCCATCAGTGATAGACTGGATTAAGAAAATGTGGCACATATG CTX 229.12 HQ 0 other unhandled orientation ? SJEPD040_D KIRREL3 chr11 126870351 - coding NA chr11 119887619 - intergenic > 21 10 333 216 0.000 0.014 1603 498 0.211 0.800 334 334 CTGGGATGCCAAGAGCCAGAGAATGGATCTTCTCCGAGTGGGGACATTGCTGACAATCCCGGCTTCCCGAGGCGGCTAAGAACAGGCAGTTTGTGTCGGCTGGCTGCAGATACCCAGAGGCACAAAGAGACCGAAGCCACCCGGAGGGACCCACGGACGGACAGATGGTAGGCGCGAACCCGAGAGGACCGGCGGAGGCTGAGCACCGAGAGCCGCCAAGGAAGAGAAACTAACCACAGCCAAGTTACCCCGCCGGCTTTCCTTCGCTGCGCTAAGGAATGAAACCCTTCCAGCTCGATCTGCTCTTCGTCTGCTTCTTCCTCTTCAGTCAAGAACCATACAGGCGAAACAGACGAGTCCTCACCCTCCTGGGATCTTACATTGGGAGAGAGGACAGACACAGAAAGAGAAGAAAATGTCATGTTTGATACGCATCAACTGCATGGCTCACAGTAAAGTCCAGCATGAGGAGTGACCGACCCTGCTTGAGTTGAAGGAGGGCTCCATGGAAGAGGTGAGGTGACTCTGAGGGCCCAACCTGGTGTTTTCCAGTGTTTTCA DEL 207.90 HQ 1 CLoss ,, NM_001161707,NM_001301097,NM_032531 ,, ,, ,, 55,55,55 ,, ,, ,, ,, ,, ,, ,, ,, ,, ,, ,, ;; geneB_no_transcripts ,, ,, SJEPD040_D DDX43 chr6 74104213 + intergenic NA chr2 24714471 - intergenic > 7 5 369 94 0.000 0.481 142 130 0.136 0.750 370 370 GATGCATGGGCCTTCAAGTTCTTCTCAAGGTGTTTCATCTTCTCAGCTCGGGCACGATGTTCTCGGTGAAACCATGCCAGGCACAGGAGCATGCTCTTCACCCGATTCTGTACACGGGGCCGCCCGAAAACGGTGATTTCGACTAGTTTCCCTGAGTCCACTATGTCCACTGTCAGCAGGGCCTGGCTCGTCCACTCCATTTCTGGAATTATGGCTCGGTCTGGGCCTTTATGGGTCACGGTTGAAAACATTTCCGGTGCAGTGGCTGACTGTAATCCCAGCACTTTGGGAGGCCGAGGCTGGAAGATCACTTGAAGCCAGAAGCCAAGAGTTCAAGACCTGCCTGGGCAACACGGCGACACCCCGTCTCTGCCGCCGCCGCCTCTGGGCCCCGCTCACCGGCGCCGCACTCGTCCGCGACCGTGGCGGCGGCGCCGCCCCGGCCTCCGCCGCTCCTCGGGCC CTX 203.75 HQ 0 other 0 NM_018665 geneB_no_transcripts SJEPD040_D EHD1 chr11 64634423 - intron LOC101929295 chr11 94887890 - intron ? 4 3 350 115 0.000 0.000 261 116 0.018 0.120 351 352 GGATTACAGGCGTGTGGCACCATACCTGGCTAATTTTTGTATTTTTAGTGGAGATGGGGTTTCACCATGTTGGTCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCAGCCCGCCTTGGCCTCCCAAAGCACTGGGATTACAGGTGTGAGCCACTGCGCCCGGCCTCATTTTAACCACGTTTTTCGGTCATGGACCCCAGAAAAGTAGATTTTAACTATTTGTAGGTGTGCATTTCACTGGCATTTAGCACATTCTTCATTGTTCAGCCGTCACCACCATCCAGCTCCAGAGCTCTTCACTTCCCAAATGGACACTCTTCCTGTTCAACACCAGCTCCCCTCGTGGCTCCCATCTGTCTCCAGAACTTCTGCCAGAATGCTTCACCTTTCCTTGGCCTCTGTTGCCACCTGCAGGAGCATTTGGAGGAGGGTTCCAGGACCCTAGATGCCAGAGAGGGAAGCAATGGGCGCCAGCCTTGGCTCCCCAAAGTGCTGG INS 66.55 HQ 0 other unhandled orientation ? SJEPD040_D LDB2 chr4 16647067 - intron IFI44L chr1 79108829 + 3utr > 3 47 103 566 0.995 0.000 205 1751 0.038 0.129 104 105 TTTTGGGACGGAGTCTCGCTCTGTCGCCCAGGCCGGACTGCGGACTGCAGTGGCGCAATCTCGGCTCACTGCAGGCTCCGCTTCCCGGGTTCACGCCATTCTCCGAAAGCAAGAGTTTCTTATGTCCAGTTATGGAATATTTCCTAAAGCAAGGCTGCAAGTGAAGTTGTGCTCAAGTGAATGTTCAGGAGACACAATTCAGTGGAAGAAATTAAGTCTTTAAAAAAGACCTAGGAATAGGAGAACCATGGAAATTGAGGAGGTAGGCCTACAAGTAGATATTGGGAACAAAATTAGAGAGGCAACCAGAAAAAGTTATTTTAGGCTCACCAGAGTTGTTCTTATTGCACAGTAACACACCAATATACCAAAACAGCAGGTATTGCAGTAGAGAAAGAGTTTAATAATTGAATGGCAGAAAAATGAGGAAGGTTGAGGAAACCTCAAATCTACCTCCCTGCTGAGTCTAAGTTTAGGATTTTTAAGAGAAAGGCAGGTAAGGTGCTGAAGGTCTGGAGCTGCTGATTTGTTGGGGTTTAGGGAATGAAATGAAACATACAGAGATGAAAACTGGAAGTTTTTTTTTGTTTTTTTTGTTTTTTTTTTTTTGTTTTTTTGCTGAGTCAATTCCTTGGAGGGGGTCTTCAGACTGACTGGTGTCAGCAGACCCATG CTX 63.46 HQ 0 other , NM_001130834,NM_001290 , , , 236,236 , , NM_006820,NM_006820 , , , , 1359,1359 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_006820;geneb_utr_codons=13 , , SJEPD040_D NDUFV1 chr11 67371162 + intergenic LOC101929295 chr11 94887789 + intron > 10 7 94 226 0.995 0.013 618 308 0.194 0.235 95 95 CAGCAGACAAACACGTGAACAAAGGTCTTTGCATCATAGACAATGTAAAGGATTAAGTGCTGTGCTTTTAGATATGCATACACATAAACATCTCTCTGGCATCTAGGGTCCTGGAACCCTCCTCCAAATGCTCCTGCAGGTGGCAACAGAGGCCAAGGAAAGGTGAAGCATTCTGGCAGAAGTTCTGGAGACAGATGGGAAGCTGAGCTCCCTGAGGGCAGGGGCAAGGTGACTTGAAGAAAGCCAGGCCAGAGGGAGCATTTTATGCATCCATCATTCGTAATCCAGAAAGAAACGGTTTAGACAATTTTAGTGTAACCATTTATGTCTATTTCCC DEL 61.15 HQ 0 other 0,0 NM_007103,NM_001166102 , , , , , , , , , , , , , , , ; geneB_no_transcripts , , SJEPD040_D PTGER4P2-CDK2AP2P2 chr9 66493091 - intergenic CBWD5,CBWD3 chr9 70843568 + intergenic ? 3 3 118 181 0.498 0.796 391 217 0.239 0.037 118 119 GGAAGGGATGCGCGCCTGCGATTCCGGGACGTACCGCGCCAGCCCAGGAGAACCCGGAAGCCAGCAGCTCTTGTTTCTCTGTGTGTTTCTGTGAGGAACCACCAAATTGTTTTCCACGCTGGGAAAACAGCAATGGATTAATAACAAGAAATTAATGGTGAAGTGGTGACGAAAATTCTACATTGCTTAGAAAGCAAATAAGAAATTTGCCTTCCGCCATGATTGTGAGGCCTCCCCAGCCATGCGGAACCGCCATAGGTGGAAGGGACTTGCCTTGTCTCGGATGAGACTTTGGACTTT ITX 54.06 HQ 0 other unhandled orientation ? SJEPD040_D ARL2,ARL2-SNX15,MIR6879,SNX15 chr11 64799861 + intron LOC101928989 chr11 81637495 + intron ? 8 3 380 226 0.000 0.000 642 122 0.067 1.000 380 382 AGGGGTGGGGACGGCGAGGAGGTGGAGGCCGGCGCTCCGCTCCGCTCCAGCTCGGTTTCATGTCCCGCCAGGCGAAGGATGACTTCCTGCGGCACTACACAGTGTCGGACCCCAGGACTCACCCCAAGGGCTACACCGAGTACAAAGTAACCGCGCAGTTCATCTCAAAGAAGGACCCAGAGGATGTCAAAGAGGTGAGGCTCCTGGGAGGAAGAGGGACTGTTCTGCAGTTCCAGATCTGGAAACTGTCAAGGGGCAGCTGGTAACTCTGCTTGGACATCGGCCCTCCTTCCTCCCTGTCCCTGGGCGAGGGGCTGCTGCAGCTGCTTCCTGATCCTCACGCCCCCTGGGGGCAGGCTAGGCATGGGGGCGGCTGCCTCACTAGTACTTTTTAACTCTAATTCACTATATGGACCATAGTCACTTCTTCCCCTTGTTAATTTGAATCCTCCCACTCCAACAGTGAAAATCCTGGGTGACACCATTGGTTATCTGTTTACATGATTGTTCAATTTCAGAATATATGGTTAATGATATTAAAATCGTTAATTCATAATGCCACAGTAAATAACTTTATAAACTACAATGCTATGTACACAGTTATTTTG DEL 21.39 HQ 0 other unhandled orientation ? SJEPD040_D HIST1H3D,HIST1H2AD chr6 26197411 - coding H3F3B chr17 73775860 - 5utr > 0 9 54 525 0.000 0.004 1 845 0.000 0.206 110 148 GTCGGAGAAGTGGCCTAAAACTTCGGCGTTGGGTGAAAGAAAATGGCCCGAACCAAGCAGACTGCTCGTAAGTCCACCGGTGGGAAAGCCCCCCGCAAACAGCTGGCCACGAAAGCCGCCAGGAAAAGCGCTCCCTCCAGCGGAGGGAGCGCAGAGCGGTTTGGTCGTTCGTTGGGCGGTGTTGGTTTTTCGCTCGTCGACTGCGGCTCTTCCTCGGGCAGCGGAAGCGGCGCGGCGGTCGGAGAAGTGGCCTAAAACTTCGGCGTTGGGTGAAAGAAAATGGCCCGAACCAAGCAGACTGCTCGTAAGTCCACCGGTGGGAAAGCCCCCCGCAAACAGCTGGCCACGAAAGCCGCCAGGAAAAGCGCTCCCTCTACCGGCGGGGTGAAGAAGCCTCATCGCTACAGGCCCGGGACCGTGGCGCTTCGAGAGATTCGTCGTTATCAGAAGTCGACCGAGCTGCTCATCCGGAAGCTGCCCTTCCAGAGGTTGGTGAGGGAGATCGCGCAGGATTTCAAAACCGACCTGAGGTTTCAGAGCGCAGCCATCGGTGCGCTGCAGGAGGCTAGCGAAGCGTACCTGGTGGGTCTGTTCGAAGATACCAACCTGTGTGCCATCCACGCTAAGAGAGTCACCATCATGCCCAAAGACATCCAGTTGGCTCGCCGGATAC CTX 845.00 LQ 0 CLoss NM_003530 68 NM_005324 411 geneB_anchor_fail_but_found_blat_hit=NM_005324 geneB_transcripts=NM_005324 SJEPD040_D HLA-D chr6 32552079 + 5utr SPTAN1 chr9 131370165 + coding > 56 2 40 210 0.474 0.000 580 86 0.118 0.005 41 44 CGTCGCTGTCGAAGCGCACGAACTCCTCCTGGTTATAGAAGAGTCTTTCCAGGCATTTGAGCAGTTTGGACAGCAGCTGTTGGCTCACGGACACTATGCCAGCCCTGAGATCAAGCAGAAACTTGATATTCTTGACCAGGAGCGTGCAGACCTGGAGAAGGCCTGGGTTCAGCGCAGGATGATGCTGGATCAGTGCCTTGAACTGCAGCTGTTCCATCGGGACTGTGAGCAAGCTGAGAACTGGATGGCTGCCC CTX 580.00 LQ 0 NLoss 0,0,0,0,0,0,3,3,3 NM_001243965,NM_002124,NM_001243965,NM_002124,NM_001243965,NM_002124,,, ,,,,,,,, ,2,,2,,2,,, ,,,,,,,, ,,,,,,,, ,,,,,,,, ,,,,,,,, NM_001130438,NM_001130438,NM_001195532,NM_001195532,NM_003127,NM_003127,NM_001130438,NM_001195532,NM_003127 1394,1394,1374,1374,1394,1394,1394,1374,1394 33,33,32,32,33,33,,, blat,blat,blat,blat,blat,blat,blat,blat,blat 4181,4181,4121,4121,4181,4181,4181,4121,4181 7434,7434,7359,7359,7419,7419,7434,7359,7419 15,15,15,15,15,15,,, ,,,,,,,, VAVEAHELLLVIEESFQAFEQFGQQLLAHGHYASPEIKQKLDILDQERADLEKAWVQRRMMLDQCLELQLFHRDCEQAENWMAA,VAVEAHELLLVIEESFQAFEQFGQQLLAHGHYASPEIKQKLDILDQERADLEKAWVQRRMMLDQCLELQLFHRDCEQAENWMAA,VAVEAHELLLVIEESFQAFEQFGQQLLAHGHYASPEIKQKLDILDQERADLEKAWVQRRMMLDQCLELQLFHRDCEQAENWMAA,VAVEAHELLLVIEESFQAFEQFGQQLLAHGHYASPEIKQKLDILDQERADLEKAWVQRRMMLDQCLELQLFHRDCEQAENWMAA,VAVEAHELLLVIEESFQAFEQFGQQLLAHGHYASPEIKQKLDILDQERADLEKAWVQRRMMLDQCLELQLFHRDCEQAENWMAA,VAVEAHELLLVIEESFQAFEQFGQQLLAHGHYASPEIKQKLDILDQERADLEKAWVQRRMMLDQCLELQLFHRDCEQAENWMAA,,, HLA-DRB1:NM_001243965[1,0]-SPTAN1:NM_001130438[33,57];HLA-DRB1:NM_002124[1,2]-SPTAN1:NM_001130438[33,57];HLA-DRB1:NM_001243965[1,0]-SPTAN1:NM_001195532[32,55];HLA-DRB1:NM_002124[1,2]-SPTAN1:NM_001195532[32,55];HLA-DRB1:NM_001243965[1,0]-SPTAN1:NM_003127[33,56];HLA-DRB1:NM_002124[1,2]-SPTAN1:NM_003127[33,56];;; geneB_transcripts=NM_001130438,NM_001195532,NM_003127 ,,,,,,,, 1,1,1,1,1,1,,, SJEPD040_D NA chr2 24714472 + intergenic OOEP chr6 74079110 - coding > 0 12 91 242 0.000 0.000 0 554 0.750 0.103 91 89 CGAGGAGCGGCGGAGGCCGGGGCGGCGCCGCCGCCACGGTCGCGGACGAGTGCGGCGCCGGTGAGCGGGGCCCAGAGGCGGCGGCGGCAGGCCCAGACCGAGCCATAATTCCAGAAATGGAGTGGACGAGCCAGGCCCTGCTGACAGTGGACATAGTGGACTCAGGGAACCTAGTCGAAATCACCGTTTTCGGGCGGCCCCGTGTACAGAATCGGGTGAAGAGCATGCTCCTGTGCCTGGCATGGTTTCACCGAGAACATCGTGCCCGAGCTGAGAAGATGAAACACCTTGAGAAGAACTTGAAGGCCCATGCATCAGACCCCCACTCTCCAGATCGTAAAAGCACACGTCTGAACTCCAGTCACCGATGTAGCTCGTATGC CTX 554.00 LQ 0 NLoss 3 NM_001080507 64 tuple 191 450 geneA_no_transcript_IDs_found geneB_transcripts=NM_001080507 SJEPD040_D C11orf95 chr11 63533291 - coding RELA chr11 65430242 - intron > 1 452 51 243 0.000 0.000 27 544 0.001 0.162 51 55 AGGAGGAAGAAGAGGAGGAGGAGGAGGGGGCCGGTGTCCCAGCTTGCCCGCGGCGTGAGCCCCCGCGCCGCTTTCCGCCCCTTCCTGCGCCGACGGGCGCTGCGCAGGGAGCGGTCGGCCTGCCGGATGGTGGCGCGGGGCGGGGCAGGCGGGGAGGGGTCTGACTCAGTTTCCCCTCTGGGTGGAGGGGGTGGCCCTTGACTCAGCATCCTCCCTGGGTGGGGGAGCAGAGGGAAACTGAGTCAGTTTCCTCTCTGGAGGGAGGTGGGGCGTGCCCTCCCTCAGTTTTCCTTAAGAA INS 544.00 LQ 0 CLoss ,,, NM_001144936,NM_001144936,NM_001144936,NM_001144936 ,,, ,,, ,,, 625,625,625,625 ,,, ,,, NM_001145138,NM_001243984,NM_001243985,NM_021975 ,,, ,,, ,,, 7,7,7,7 1647,1449,1347,1656 ,,, ,,, ,,, ;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001145138,NM_001243984,NM_001243985,NM_021975 ,,, ,,, SJEPD040_D NA chr16 53044885 - intergenic KLHL22 chr22 20855125 - intergenic > 0 19 49 209 0.000 0.000 1 628 0.000 0.273 86 82 TGCATTCGGGGGTCCTTGGAACTGTGGTCCATGGTAAAGTTTTACAGCATTACCAGGAGTGTGACAAGGGTGAGGAGTTAGGACCTTGGCCTCCCAAAGTGCTGGTATTACAGGCGTAATCCCAGCTGGGCACTGAGCCACTGTGCCCAGCCCCACTTATGCCATCTTCTGATCATAGAGCTGGACGTGGTAGTGTGTGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGAAGAATCAGTTGAGCCCAGGATGCAGCAGTTGCAGTGAGCCAAGATCATGCCACCATG CTX 380.90 LQ 0 other 0 NM_032775 geneB_no_transcripts SJEPD040_D TRIM24 chr7 138264156 + coding CCND1 chr11 69455924 + 5utr > 0 2 135 264 0.000 0.000 1 166 0.000 0.235 137 132 CTGTGCTAAGATCAGATGCCCCTGATAGTACAGGAGATCAACCTGGACTTCACCAGGACAATTCCTCAAATGGAAAGTCTGAATGGTTGGATCCTTCCCAGAAGTCACCTTTTCATGTTGGAGAGACAAGGGAGAGGGCTGTCGGCGCAGTAGCAGCGAGCAGCAGAGTCCGCACGCTCCGGCGAGGGGCAGAAGAGCGCGAGGGAGCGCGGGGCAGCAGAAGCGAGAGCCGAGCGCGGACCCAGCCAGGACCCACAGCCCTCCCCAGCTGCCCAGGAAGAGCCCCAGCCATGGAACACCAGCTCCTGTGCTGCGAAGTGGAAACCATCCGCCGCGCGTACCCCGATGCCAACCTCCTCAACGACCGGGTGCTGCGGGCCATGCTGAAGGCGGAGG CTX 332.00 LQ 3 Fusion 1,1 NM_003852,NM_015905 779,813 15,15 tuple,tuple 2362,2464 35,35 109,109 NM_053056,NM_053056 -52,-52 1,1 tuple,tuple , 888,888 46,46 140,140 VLRSDAPDSTGDQPGLHQDNSSNGKSEWLDPSQKSPFHVGETRERAVGAVAASSRVRTLRRGAEEREGARGSRSESRARTQPGPTALPSCPGRAPAMEHQLLCCEVETIRRAYPDANLLNDRVLRAMLKAE,VLRSDAPDSTGDQPGLHQDNSSNGKSEWLDPSQKSPFHVGETRERAVGAVAASSRVRTLRRGAEEREGARGSRSESRARTQPGPTALPSCPGRAPAMEHQLLCCEVETIRRAYPDANLLNDRVLRAMLKAE TRIM24:NM_003852[1,15]-CCND1:NM_053056[1,5];TRIM24:NM_015905[1,15]-CCND1:NM_053056[1,5] geneB_transcripts=NM_053056;geneb_utr_codons=13 FHVGETRERA,FHVGETRERA 2,2 SJEPD040_D NA chr9 45355938 - intergenic CBWD5,CBWD3 chr9 70843568 + intergenic > 9 2 293 181 0.498 0.796 1091 134 0.367 0.037 293 294 TGGATGTCGCCGTGGCTGCGGCCAAGCCAGGCGGTCTGCTCGGCGGCGGCTGCACCGGGGCAGGAACCGACCCTCAGCCCCATCCCCGGTGGCTGCGGACGGCCCCTGGAGCGGCCCCGACGTCTCTTCGGAGGAGAAGAGGGGCGGGAGTCACGGCCAGGCAGGCCCTCAGGCGGGAAGGGATGCGCGCCTGCGATTCCGGGACGTACCGCGCCAGCCCAGGAGAACCCGGAAGCCAGCAGCTCTTGTTTCTCTGTGTGATTCTGTGAGGAACCACCAAATTGTTTTCCACGCTGGGAAAACAGCAATGGATTAATAACAAGAAATTAATGGTGAAGTGGTGACGAAAATTCTACATTGCTTAGAAAGCAAATAAGAAATTTGCCTTCCGCCATGATTGTGAGGCCTCCCCAGCCATGCGGAACCGCCATAGGTGGAAGGGACTTGCCTTGTCTCGGATGAGACTTTGGACTTT ITX 240.31 LQ 0 other geneB_no_transcripts SJEPD040_D KIRREL3 chr11 126870351 - coding NA chr11 119883693 - intergenic > 10 0 242 481 0.004 0.000 1997 0 0.211 0.000 243 241 TGTGTCGGCTGGCTGCAGATACCCAGAGGCACAAAGAGACCGAAGCCACCCGGAGGGACCCACGGACGGACAGATGGTAGGCGCGAACCCGAGAGGACCGGCGGAGGCTGAGCACCGAGAGCCGCCAAGGAAGAGAAACTAACCACAGCCAAGTTACCCCGCCGGCTTTCCTTCGCTGCGCTAAGGAATGAAACCCTTCCAGCTCGATCTGCTCTTCGTCTGCTTCTTCCTCTTCAGTCAAGGGCCAGGACTCCAGTGAGCCCAACCTGGTGTTTTCCAGTGTTTTCAGGAGGCATTCATTCTCAGGGGCCCACCTGGGCTTGTGGAAGCCCGAGAGTGTGTATCTCCTTGAATTTTGCACCCTGGATGCCTTCCTTGCTCACCCTGGACCCAGCCCTGCCCTGCTTTTGAGCAATTTGTATTCTTGGTTTAACAAAGTGTGGAGAGGACCCTCAAGGATCTCAGAACCTACTGGATGAGGCAGGAAAATAAAAAGACACAGAGTGTGCTGTGTGATCAGCAGAGATGAAGGTCTTCGGTTCAGGCTCCACAACTGATTGATGCTGTTTTCCTGTTAGTATCTCTTTTTCATCATGCACGATCCTCCATAGTGATGGAATGGAGACAGCTTCTCAGAGAAAGCACAGCTTTGGAAGGTGAGGTGACTCTGAGGCAGGAGGTCCAAGTTTGCTGGACAATGGCAGAAACAGAATTCAAACACC DEL 199.70 LQ 1 CLoss ,, NM_001161707,NM_001301097,NM_032531 ,, ,, ,, 55,55,55 ,, ,, ,, ,, ,, ,, ,, ,, ,, ,, ,, ;; geneB_no_transcripts ,, ,, SJEPD040_D NKAPP1 chrX 119378619 - 3utr RHOXF1 chrX 119254763 + intergenic > 5 0 308 53 0.000 0.036 174 1 0.108 0.000 309 309 AGGGAGGCCTCGGGCTCCGGGCGGGGGAATGTGTTGCAGTTTGTCCAAGAGCCCCAAGCCCAGCAAAGCCGCCCGTTCCCCGCTGGGGCGCAACTCTCACTGGAACTCTTGTTCTCTGACTGGGGAATGGAATGGGCTCAGCCAAGGCTCCCGAAACCAGCCCTGCCGCTCCCAGTTGTGGTCGCATTCTCAAGAGCGGCTGACTGCGCCGTGGACCATCACTTTCGCTTCTGCCTGCTCTTGCGCCTATTGCGGCAACTACTCACGCTCCTACGGGACGAGGAGAGGGAGGTGAATCCGTGGCAGAGATGCGATTCCTCCCGTGATCTCAGTGATTGTATCAGGCGAAAACGAGGAGGGCGG ITX 167.67 LQ 0 other 0 NM_139282 geneB_no_transcripts SJEPD040_D DGKI chr7 137455584 + intron HSD17B12 chr11 43877440 + 3utr > 2 32 211 592 0.994 0.000 162 108 0.200 0.069 212 209 CCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAGGTAGCTGGGACTACAGGCACCCGCCACTACGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTTTTAGCCGGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCCTCAGTTTAAATGTATGTAAATATCGAAGCTATATGGTATGATTTATAAAGATAAATGGGCCAAAGTGTACATTGAGACTGGCAGCCATCTATGGTACCACTGAAACCCTGACCCAGAAAAGTGGCTTGCTTGGACACCCAGCTGCCTTTGTTTCTGCATTAAACCAATATTGATCACACATATGACACAGGCTAGTCCTATAAAAGTAATGACTTCATAGAAATGGCATTATAATTTTTAAGTTGATACTCTACAGGTAGCTATTGATATAATTAGTTTTAATAAAACATGCTGCAACCATGGTATACAACAAAAATACATTTCTTTGGTGATTGAAATTAAGGCCGTATTTACAATGACTTAATATAAGACTGACTTTTATCCTGCTTCATAACTTGTATGGAGAACTCACCAAGAAAGAATTCAATACTGTGAAATATGCAGCAAGAAGATTGGTCTTTACCTAGGCTGTGTTTCCTAAGCTCTGAGTTTTAAGCACCAGTAGATTTGTATTAAAAGAAAAAAAAAATGGGGCCTTAGCTTCTGGCTTTTAATTTTGCCAGCTAAGGACATAAAACAAAAATAAACAAACA CTX 162.29 LQ 0 other NM_004717 NM_016142 939 geneB_no_inframe_contig_found geneB_transcripts=NM_016142;geneb_utr_codons=13 SJEPD040_D HLA-C chr6 31324538 - 5utr LINC01484 chr5 173146323 - intron > 78 2 396 197 0.000 0.000 148 138 0.010 0.167 402 397 CGAGATGCTGGTCATGGCGCCCCGAACCGTCCTCCTGCTGCTCTCGGCGGCCCTGGCCCTGACCGAGACCTGGGCCGGTGAGTGCGGGTCGGGAGGGAAATGGCCTCTGCCGGGAGGAGCGAGGGGACCGCAGGCGGGGGCGCAGGACCTGAGGAGCCGCGCCGGGAGGAGGGTCGGGCGGGTCTCAGCCCCTCCTCGCCCCCAGGCTCCCACTCCATGAGGTATTTCGACACCGCCATGTCCCGGCCCGGCCGCGGGGAGCCCCGCTTCATCTCAGTGGGCTACGTGGACGACACGCAGTTCGTGAGGTTAGACAGCGACGCCGCGAGTCCGAGAGAGGAGCCGCGGGCGCCGTGGATAGAGCAGGAGGGGCCGGAGTATTGGGACCGGAACACACAGATCCCCAACACCAACACACACACACACACACCTGGACACCCAGCTCTAATATAATCAGATAGAGATATGCATGCAGACAAATTTGCCTGTATAGTCAAACACATAGGCAAATAGAGAACGAGACACCACATGAACAAAGGCAAACCTACACACAAAGACACAGAGCACACTTACGCATATATCTATAGACCCACCT CTX 138.79 LQ 0 other NM_005514 270 geneB_no_transcripts SJEPD040_D MIR3687-1 chr21 9827582 + intergenic PLEKHB1 chr11 73361680 + coding > 29 2 47 403 0.890 0.000 120 108 0.261 0.005 47 57 CAGGACTCTTTCGAGGCCCTGTAATTGGAATGAGTCCACTTTAAATCCTTTAACGAGGCAGGACGAGGAGGACCGTGTGCTCATCCACTTCAATGTCCGTGACATAAAGATCGGCCCAGAGTGCCATGATGTGCAGCCCCCAGAGGGCCGGAGCCGAGATGGCCTGCTGACTGTGAACCTACGGGAAGGCGGCCGCCTGCACCTCTGTGCGGAGACCAAGGATGATGCCCTAGCATGGAAGACAGCACTGCTGGAGGCAAACTCCACCCCGGTGCGCGTCTACAGCCCGTACCAAGACTACTACGAGGTGGTGCCCCCCAATGCACACGAGGCCACGTATGTCCGCAGCTACTACGGACCGCCCTACGCAGGCCCTGGCGTGACGCACGTGATAGTGCGGGAGGATCCCTGCTACAGCGCCGGCGCCCCTCTGGCCATGGGCATGCTTGCGGGAGCCGCC CTX 120.00 LQ 0 NLoss 0,0,0 ,, ,, ,, ,, ,, ,, ,, NM_001130033,NM_001130035,NM_001130036 59,40,40 ,, blat,blat,blat 177,120,120 627,570,570 ,, ,, ,, ;; geneA_no_transcript_IDs_found;geneB_blat_issues=too_many_gaps,too_many_mismatches;geneB_anchor_fail_but_found_blat_hit=NM_001130034;geneB_anchor_fail_but_found_blat_hit=NM_021200 geneB_transcripts=NM_001130033,NM_001130034,NM_001130035,NM_001130036,NM_021200 ,, ,, SJEPD040_D ST6GALNAC1 chr17 74647950 - intergenic PTMA,MIR1244-1,MIR1244-3,MIR1244-2 chr2 232573241 + 5utr > 0 40 47 241 0.000 0.798 1 498 0.000 0.129 51 59 CTTGACACCAGCTCCGAAATCACCACCAAGGACTTAAAGGAGAAGAAGGAACCCCCCACTGGCTGCCCTGAAAAGCCATCTTTGCATTGTTCCTCATCCGCCTCCTTGCTCGCCGCAGCCGCCTCCGCCGCGCGCCTCCTCCGCCGCCGCGGACTCCGGCAGCTTTATCGCCAGAGTCCCTGAACTCTCGCTTTCTTTTTAATCCCCTGCATCGGATCACCGGCGTGCCCCACCATGTCAGACGCAGCCGTAGACACCAGCTCCGAAATCACCACCAAGGACTTAAAGGAGAAGAAGGAA CTX 111.12 LQ 0 other 3,3 , , , , , , , NM_001099285,NM_002823 -58,-58 , blat,blat , 336,333 , , , ; geneA_no_transcript_IDs_found geneB_transcripts=NM_001099285,NM_002823;geneb_utr_codons=13 , , SJEPD040_D NA chr9 45355938 - intergenic CBWD5 chr9 70500056 - intergenic > 7 2 182 172 0.505 0.747 348 127 0.367 0.032 183 183 GCGGCCCCGACGTCTCTTCGGAGGAGAAGAGGGGCGGGAGTCACGGCCAGGCAGGCCCTCAGGCGGGAAGGGATGCGCGCCTGCGATTCCGGGACGTACCGCGCCAGCCCAGGAGAACCCGGAAGCCAGCAGCTCTTGTTTCTCTGTGTGTTTCTGTGAGGAACCACCAAATTGTTTTCCACGGCCCATAGGTGGAAGGGACTTGCCTTGTCTCAGATGAGACTTTGGACTTTGGACTGTGGACTTTTGAGTTAACACTGAAATGAATTAATGCTGAAATGAATTAAGACTTTGGGAGACGGTTGAGAAGCCATGACTCATTTTAAAATGTGAGACATGCCTTTCACCTTCTGC INS 100.98 LQ 0 other 0,0,0 ,, ,, ,, ,, ,, ,, ,, NM_001024916,NM_001286835,NM_001286836 ,, ,, ,, ,, ,, ,, ,, ,, ;; geneB_no_transcripts ,, ,, SJEPD040_D NA chr9 45355940 - intergenic CBWD5,CBWD3 chr9 70846968 + intergenic > 7 2 182 184 0.505 0.748 355 89 0.367 0.033 182 182 GCGGCCCCGACGTCTCTTCGGAGGAGAAGAGGGGCGGGAGTCACGGCCAGGCAGGCCCTCAGGCGGGAAGGGATGCGCGCCTGCGATTCCGGGACGTACCGCGCCAGCCCAGGAGAACCCGGAAGCCAGCAGCTCTTGTTTCTCTGTGTGATTCTGTGAGGAACCACCAAATTGTTTTCCACGGCCCATAGGTGGAAGGGACTTGCCTTGTCTCGGATGAGACTTTGGACTTTGGACTGTGGACTTTTGAGTTAACACTGAAATGAATTAATGCTGAAATGAATTAAGACTTTGGGAGACGGTTGAGAAGCCATGACTCATTTTAAAATGTGAGACATGCCTTTCACCTTCTGCCATGATTGTGAG ITX 99.18 LQ 0 other geneB_no_transcripts SJEPD040_D BTRC chr10 103124590 - intron FAM192A chr16 57207780 - 5utr > 5 1 149 446 0.000 0.495 91 84 0.121 0.000 183 208 ATAAGAACAGATACTACACTTGATCTTATCAGTTTAATATCTGATACGTCCTCTATCCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCCGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCCAGGAACGGTGCACCCCCTCCGGGGATACAACGTGTTTCCTAAAAGTAGAGGGAGGTTGGTTGTTTCATTATGGATGGAGGGGATGATGGTAACCTTATTATCAAAAAGAGGTTTGTGTCTGAGGCAGAACTAGATGAACGGCGCAAAAGGAGGCAAGAAGAATGGGAGAAAGTTCGAAAACCTGAAGATCCAGAAGAATGTCCAGAGGAGGTTTATGACCCTCGATCTCTATATGAAAGGCTACAGGAACAGAAGGACAGGAAGCAGCAGGAGTACGAGGAACAGTTCAAATTCAAAAACATGGTAAGAGGCTTAGATGAAGATGAGACCAACTTCCTTGATGAGGTTTCTCGACAGCAGGAACTAATAGAAAAGCAACGAAGAGAAGAAGAACTGAAAGAACTGAAGGAATACAGAAATAACCTCAAGAAGGTTGGAATTTCTCAAGAGAACAAGAAGGAAGTGGAAAAGAAACTGACTGTGAAGCCTATAGAAACCAAG CTX 91.93 LQ 0 upTSS 0,0,0,2 NM_001256856,NM_003939,NM_033637, ,,, 1,1,1, ,,, ,,, ,,, ,,, NM_024946,NM_024946,NM_024946,NM_024946 -4,-4,-4,-4 2,2,2, tuple,tuple,tuple,tuple ,,, 765,765,765,765 72,72,72, ,,, IRTDTTLDLISLISDTSSIRGQYIKWIFGAGRWNRSLLRPLHASTWYCSTSRNGAPPPGIQRVS*K*REVGCFIMDGGDDGNLIIKKRFVSEAELDERRKRRQEEWEKVRKPEDPEECPEEVYDPRSLYERLQEQKDRKQQEYEEQFKFKNMVRGLDEDETNFLDEVSRQQELIEKQRREEELKELKEYRNNLKKVGISQENKKEVEKKLTVKPIETK,IRTDTTLDLISLISDTSSIRGQYIKWIFGAGRWNRSLLRPLHASTWYCSTSRNGAPPPGIQRVS*K*REVGCFIMDGGDDGNLIIKKRFVSEAELDERRKRRQEEWEKVRKPEDPEECPEEVYDPRSLYERLQEQKDRKQQEYEEQFKFKNMVRGLDEDETNFLDEVSRQQELIEKQRREEELKELKEYRNNLKKVGISQENKKEVEKKLTVKPIETK,IRTDTTLDLISLISDTSSIRGQYIKWIFGAGRWNRSLLRPLHASTWYCSTSRNGAPPPGIQRVS*K*REVGCFIMDGGDDGNLIIKKRFVSEAELDERRKRRQEEWEKVRKPEDPEECPEEVYDPRSLYERLQEQKDRKQQEYEEQFKFKNMVRGLDEDETNFLDEVSRQQELIEKQRREEELKELKEYRNNLKKVGISQENKKEVEKKLTVKPIETK, BTRC:NM_001256856[1,1]-FAM192A:NM_024946[2,7];BTRC:NM_003939[1,1]-FAM192A:NM_024946[2,7];BTRC:NM_033637[1,1]-FAM192A:NM_024946[2,7]; geneB_transcripts=NM_024946;geneb_utr_codons=5 ,,, 0,0,0, SJEPD040_D PIK3AP1 chr10 98510028 - intergenic DMPK chr19 46275084 - coding > 7 0 182 53 0.856 0.000 90 0 0.250 0.000 184 204 CCCAGGTACTTCAACTTGTTTCTGTAGAAATTGCCAGAAATGTTGATGCCTTCACAGCGTACGACCACCACCTTCCGGCCCAGCAGTACCTGTTTAGCCACGATGGCCGCCAGGCGGCCCAGGAGATGGCCTCGACCATCAAGCACCAGGACCTGCACCTCCGCCATCTTCGGCAGCCGCTTGGAGAAGCAGCAGATGGCCGCCAGAGCCTGAGCCGGGAGATGGAGGCCATCCGCACGGACAACCAGAACTTCGC CTX 90.00 LQ 0 NLoss 3,3,3,3,3,3,3 ,,,,,, ,,,,,, ,,,,,, ,,,,,, ,,,,,, ,,,,,, ,,,,,, NM_001081560,NM_001081562,NM_001081563,NM_001288764,NM_001288765,NM_001288766,NM_004409 478,478,493,509,394,478,483 ,,,,,, tuple,tuple,tuple,tuple,tuple,tuple,tuple 1432,1432,1477,1525,1180,1432,1447 1875,1878,1920,1968,1626,1593,1890 ,,,,,, ,,,,,, ,,,,,, ;;;;;; geneA_no_transcript_IDs_found geneB_transcripts=NM_001081560,NM_001081562,NM_001081563,NM_001288764,NM_001288765,NM_001288766,NM_004409 ,,,,,, ,,,,,, SJEPD040_D LINC01410 chr9 66459965 + 5utr NA chr20 22968684 - intergenic > 8 0 264 73 0.496 0.840 558 1 0.174 0.000 265 282 CTCGGGGTCGGTCCCGTCCCGCCCGGGTTGGGTGGGGCTGCCGCGAGTCGGAAGAGGTGGGATGCTGCTGCCTGGCGGTGCTGCAGTGGCGGATCTTCAGGAGGAGGATTTGTCCCCAGTGCCTTATTTAGTTCACTTGGTGAGGTCATGTTTTCCTGGATGGTGTTGATGCTAGTAGATGTTCTTCAGTGTCTGGACATTAAAATCTTGGGCATGCAGCACCATATGAGAAGTTTAAAAAATAAAATTTAAAGAGAGAAAAGGCTTTGGTATCAGGATGATTATTGCGGCACTATTCACAATAGCAAAGACTGGGAACCAACACAAATGTCCGACAATGATAGACTGGATTAAGAG CTX 89.53 LQ 0 other geneB_no_transcripts SJEPD040_D NA chr6 23116517 - intergenic DDX43 chr6 74115401 + coding > 0 14 112 436 0.915 0.000 1 1039 0.000 0.169 152 192 GAGCTGTTTTCCTTTCTTTTTCTTTCTCTTTCTCTTGCCTATTAAACCTCCGCTCCTAAACTCCTCGTGTGTGTCTGTGTCCTAAATTTTCCTGGTGTGAGATGACAAACTCCGGGTATTTACCCCAGACAACGTAGACGCTTCATATTGGGAACCTCGTCTGGGATACCAAGGTACAACATTCATCAAAACGGAAAGAAAATTTTAATATAACGTGGGATGACTTGAAGGATGGGGAGAAACGACCTATCCCCAATCCTACCTGCACATTTGATGACGCCTTTCAATGTTATCCTGAGGTTATGGAAAACATTAAAAAGGCAGGTTTTCAAAAGCCAACACCTATTCAGTCACAGGCATGGCCCATTGTGTTGCAAGGAATAGATCTTATAGGAGTAGCCCAGACTGGAACAGGAAAGACATTGTGTTATTTAATGCCTGGATTTATTCATCTGGTCCTTCAACCCAGCCTTAAAGGTCAAAGGAATAGACCCGGCATGTTAGTTCTAACTCCCACTCGGGAATTAGCACTTCAAGTAGAAGGAGAATGTTGCAAATATTCATATAAAGGGCTTCGGAGTGTTTGTGTATATGGTGGTGGAAATAGAGATGAACAAATAGAAGAGCT ITX 88.49 LQ 0 NLoss 3 NM_018665 217 tuple 651 1947 geneA_no_transcript_IDs_found geneB_transcripts=NM_018665 SJEPD040_D ERO1L chr14 53163838 - intergenic GNPNAT1 chr14 53242710 - 3utr > 1 5 116 193 0.584 0.000 43 193 0.167 0.077 118 118 CAGGCCTGTAATCCCAGCTACTCGGGTAGCTGAGGCGTAAGAATCACTTAAACCCGGGAAGCGGAGGTTGCAGTGACCCGAGATTGCGCCACTGCACTCCAGCCTGGGTGAGTTAAGTGCCCAGGCTGGTCTCTTAACTCCTAGGCTCAAGTGATCCTCCCACCTCAGCCTCCCAAAGTGCTTGGATGACAGGTGCGAGCCACTGCACCTGGCCCACATTTTTTAAAGAGACACTATCCCACTCCATCACCCAGGCTGGAGTCCAGTGGTGTGATCATAGCTCACTGCATCCTCCAGTTCCTGGGTTCAAG INS 84.89 LQ 1 other 0 NM_014584 NM_198066 555 geneB_no_inframe_contig_found geneB_transcripts=NM_198066;geneb_utr_codons=13 SJEPD040_D NA chr4 104706641 + intergenic DDX43 chr6 74111581 + coding > 0 11 51 445 0.802 0.000 1 347 0.000 0.297 60 63 GTAGACGCTTCATATTGGGAACCTCGTCTGGGATACCAAGGTACAACATTCATCAAAACGATACTGCATTCCAACCTTCTGTTGGAAAAGATGGAAGCACAGATAACAATGTTGTTGCAGGAGATCGGCCATTGATAGATTGGGATCAAATTAGAGAGGAAGGTTTGAAATGGCAAAAAAACAAAGTGGGCAGGTCAGTGCTGCTTCCTAATATTTACATATATTGTTTCTGTTAACTGCAGTTTTTATTCTCTGTACAATGTCTGTTCTTTATTTTTAGTAATGAAATGTATATGAAAATAGTAAAATCTAAAATGCTGCAATTAGTCCCTAGGTTATGATAGCTTCTATGTTATCTGCTGTCATTTATGCTGTAGGGGAAATATTAAACCTATTTATAGTCTGTCAGCGGTAATTCACTGCAAAGGGCTAATAAAATAGGAAAAAATCAGTCCCAATGGGAAAATAGGAAGGGAGTAAACATGCAAACCATAAGTTAACATTGTTG CTX 68.86 LQ 0 NLoss 3 NM_018665 146 tuple 437 1947 geneA_no_transcript_IDs_found geneB_transcripts=NM_018665 SJEPD040_D SBSPON chr8 73979899 - intron RNF145 chr5 158624859 + intron ? 3 0 386 63 0.000 0.000 118 1 0.429 0.000 387 392 CCTCCCAGTTTAAATACACATAGAACAGTCAGCCATTTTCCTTTATGCAGCACTTGTGCTCAGATAGAACGGGAAAAGCAAATACAGTAACCCCAAGTTACTCTGTCAACATGAGGGTGTCCTAAAGTAGCAATGAATTAAAACTTGCTTTGACAGAAACTAAACAAGGGAAACTCTGTTTGTGATCATTAAAAAAAAAATTGGGGAACCGGGTGCAGTGGGTCATGTTTCTAATCCCAGCGTGAGCCAGGAGGCCGAGGCAGGAGGATCCCTTGCACCCAGGAGTTTGAGATCAGCTTGGCAACACAGTTAAACTCCATCCCTACAAATAATTTTTCTTTATAAAAATTAGCCAGACGTGGTGGCATGCACCTGTGGACCCAGCCACCTTGGAGGCTGGGGTGGGAGGACCGCCCGAGCCCAAGAATTAGAGGCTGCAGTGAGCCATGATTGTGCCACTG CTX 59.00 LQ 0 other unhandled orientation ? SJEPD040_D NA chr5 174542147 + intergenic KCTD14,NDUFC2-KCTD14,NDUFC2 chr11 77790905 - 5utr > 0 4 87 214 0.748 0.018 0 211 0.000 0.127 94 103 CGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCTATCAATCTGTCCGTCCCGTGTCGGAGTCCGGCGCGCAGAGGAGGAGGAGAAAGCTGACCGCTTAGGCCCGGGTAGTGGTCGTCGTGGTTTTCCTTGTAGTTCGTGGTCTGAGACCAGGCCTCAAGTGGAAACGGCGTCACCATGATCGCACGGCGGAACCCAGAACCCTTACGGTTTCTGCCGGATGAGGCCCGGAGCCTGCCCCCGCCCAAGCTGACCGACCCGCGGCTCCTCTACATCGG CTX 53.21 LQ 0 other 3,3,3,3,3,3 ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, NM_001203260,NM_001203261,NM_001203262,NM_001204054,NM_001204055,NM_004549 -38,-38,-38,-38,-38,-38 ,,,,, tuple,tuple,tuple,tuple,tuple,tuple ,,,,, 405,345,261,267,291,360 ,,,,, ,,,,, ,,,,, ;;;;; geneA_no_transcript_IDs_found geneB_transcripts=NM_001203260,NM_001203261,NM_001203262,NM_001204054,NM_001204055,NM_004549;geneb_utr_codons=13 ,,,,, ,,,,, SJEPD040_D LOC100507391 chr3 194451844 - intron DDX43 chr6 74111581 + coding > 0 11 50 445 0.856 0.000 1 347 0.000 0.297 60 63 GTAGACGCTTCATATTGGGAACCTCGTCTGGGATACCAAGGTACAACATTCATCAAAACGATACTGCATTCCAACCTTCTGTTGGAAAAGATGGAAGCACAGATAACAATGTTGTTGCAGGAGATCGGCCATTGATAGATTGGGATCAAATTAGAGAGGAAGGTTTGAAATGGCAAAAAAACAAAGTGGGCAGGTCAGTGCTGCTTCCTAATATTTACATATATTGTTTCTGTTAACTGCAGTTTTTATTCTCTGTACAATGTCTGTTCTTTATTTTTAGTAATGAAATGTATATGAAAATAGTAAAATCTAAAATGCTGCAATTAGTCCCTAGGTTATGATAGCTTCTATGTTATCTGCTGTCATTTATGCTGTAGGGGAAATATTAAACCTATTTATAGTCTGTCAGCGGTAATTCACTGCAAAGGGCTAATAAAATAGGAAAAAATCAGTCCCAATGGGAAAATAGGAAGGGAGTAAACATGCAAACCATAAGTTAACATTGTTG CTX 50.00 LQ 0 NLoss 3 NM_018665 146 tuple 437 1947 geneA_no_transcript_IDs_found geneB_transcripts=NM_018665 SJEPD040_D PDE3A chr12 20704365 - intron KCTD14,NDUFC2-KCTD14,NDUFC2 chr11 77790905 - 5utr > 0 4 92 214 0.826 0.018 0 225 0.014 0.127 110 122 ACGACGCTCTTCCGATCTTCGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCTATCAATCTGTCAATCCCGCGGCGGAGTCCGGCGCGCAGAGGAGGAGGAGAAAGCTGACCGCTTAGGCCCGGGTAGTGGTCGTCGTGGTTTTCCTTGTAGTTCGTGGTCTGAGACCAGGCCTCAAGTGGAAACGGCGTCACCATGATCGCACGGCGGAACCCAGAACCCTTACGGTTTCTGCCGGATGAGGCCCGGAGCCTGCCCCCGCCCAAGCTGACCGACCCGCGGCTCCTCTACATCGG CTX 39.06 LQ 0 other 0,0,0,0,0,0,3,3,3,3,3,3 NM_000921,NM_000921,NM_000921,NM_000921,NM_000921,NM_000921,,,,,, ,,,,,,,,,,, 1,1,1,1,1,1,,,,,, ,,,,,,,,,,, ,,,,,,,,,,, ,,,,,,,,,,, ,,,,,,,,,,, NM_001203260,NM_001203261,NM_001203262,NM_001204054,NM_001204055,NM_004549,NM_001203260,NM_001203261,NM_001203262,NM_001204054,NM_001204055,NM_004549 -38,-38,-38,-38,-38,-38,-38,-38,-38,-38,-38,-38 1,1,1,1,1,1,,,,,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple ,,,,,,,,,,, 405,345,261,267,291,360,405,345,261,267,291,360 42,42,42,42,42,42,,,,,, ,,,,,,,,,,, RRSSDLRN*PDKSLHQLRTAMHHHPRNRERAINLSIPRRSPARRGGGES*PLRPG*WSSWFSL*FVV*DQASSGNGVTMIARRNPEPLRFLPDEARSLPPPKLTDPRLLYI,RRSSDLRN*PDKSLHQLRTAMHHHPRNRERAINLSIPRRSPARRGGGES*PLRPG*WSSWFSL*FVV*DQASSGNGVTMIARRNPEPLRFLPDEARSLPPPKLTDPRLLYI,RRSSDLRN*PDKSLHQLRTAMHHHPRNRERAINLSIPRRSPARRGGGES*PLRPG*WSSWFSL*FVV*DQASSGNGVTMIARRNPEPLRFLPDEARSLPPPKLTDPRLLYI,RRSSDLRN*PDKSLHQLRTAMHHHPRNRERAINLSIPRRSPARRGGGES*PLRPG*WSSWFSL*FVV*DQASSGNGVTMIARRNPEPLRFLPDEARSLPPPKLTDPRLLYI,RRSSDLRN*PDKSLHQLRTAMHHHPRNRERAINLSIPRRSPARRGGGES*PLRPG*WSSWFSL*FVV*DQASSGNGVTMIARRNPEPLRFLPDEARSLPPPKLTDPRLLYI,RRSSDLRN*PDKSLHQLRTAMHHHPRNRERAINLSIPRRSPARRGGGES*PLRPG*WSSWFSL*FVV*DQASSGNGVTMIARRNPEPLRFLPDEARSLPPPKLTDPRLLYI,,,,,, PDE3A:NM_000921[1,1]-NDUFC2-KCTD14:NM_001203260[1,4];PDE3A:NM_000921[1,1]-NDUFC2-KCTD14:NM_001203261[1,3];PDE3A:NM_000921[1,1]-NDUFC2-KCTD14:NM_001203262[1,3];PDE3A:NM_000921[1,1]-NDUFC2:NM_001204054[1,3];PDE3A:NM_000921[1,1]-NDUFC2:NM_001204055[1,3];PDE3A:NM_000921[1,1]-NDUFC2:NM_004549[1,3];;;;;; geneB_transcripts=NM_001203260,NM_001203261,NM_001203262,NM_001204054,NM_001204055,NM_004549;geneb_utr_codons=13 ,,,,,,,,,,, 1,1,1,1,1,1,,,,,, SJEPD040_D TNFAIP2 chr14 103592999 + coding ELL chr19 18557278 - coding > 0 2 57 216 0.000 0.036 1 112 0.000 0.027 57 56 GGAAGAAGAAGAAGGGTCAGCCCAGCTCAGCGGAGCCCGAGGACGCAGCCGGGTCCATCTCCTCTTCGGAGCAGCGCCAGAGCTACAAGAACGACTTCAATGCCGAGTACAGCGAGTACCGCGACCTGCACGCCCGCATTGAGCGCATCACGCGGCGGTTCACCCAGCTCGACGCCCAGCTCCGGCAGCTCTCCCAGGGCTCCGAGGAGTATGAGACTACTCGAGGGCAGATTTTGCAGGAATATCGAAAAATCAAAAAGACCAACACCAAC CTX 34.64 LQ 2 Fusion 1 NM_006291 69 1 perfect 205 17 55 NM_006532 515 10 blat 1545 1866 18 56 KKKKGQPSSAEPEDAAGSISSSEQRQSYKNDFNAEYSEYRDLHARIERITRRFTQLDAQLRQLSQGSEEYETTRGQILQEYRKIKKTNTN TNFAIP2:NM_006291[1,1]-ELL:NM_006532[10,12] geneB_transcripts=NM_006532 2 SJEPD040_D NA chr4 174554676 - intergenic LASP1,MIR6779 chr17 37075287 + 3utr > 0 47 83 216 0.798 0.000 0 169 0.000 0.294 104 116 TACACGACGCTCTTCCGATCTCTGTGGGATGCTGAAGGAGATGAGTGGGCTTCGGAGTGAATGTGGCAGTTTAAAAAATAACTTCATTGTTTGGACCTGCATATCACGGCCCGTGGGGCAGGGCTGGAATGGGAGACCTGTTGGCCTGTGGGCCTCACCTGCCCCTCTGTTCTCTCCCCTCACATCCTCCTGCCCAGCTCCTCACATACCCACACATTCCAGGGCTGGGGTGAGCCTGACTGCCAGGACCCCAGGTCAGGGGCTCCCTACATTCCCCAGAGTGGGATCCACTTCTTGGTTCCTGGGATGGCGATGGGGACTCTGCCGCTGTG CTX 34.21 LQ 0 other , , , , , , , , NM_001271608,NM_006148 , , , , 618,786 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_001271608,NM_006148;geneb_utr_codons=13 , , SJEPD040_D PTGER4P2-CDK2AP2P2 chr9 66493091 - intergenic CBWD5 chr9 70500056 - intergenic ? 3 2 282 170 0.510 0.749 156 129 0.239 0.032 295 295 CCTGGATGTCGCTGTGGCTGCGGCCCAGCCAGGCGGTCTGCTCGGCGGCGGCTGCACCGGGGCAGGAACCGACCCTCAGCCCCATCCCCGGTGGCTGCGGACGGCCCCTGGAGCGGCCCCGACGTCTCTTCGGAGGAGAAGAGGGGTGGGAGTCACGGCCAGGCAGGCCCTCAGGCGGGAAGGGATGCGCGCCTGCGATTCCGGGACGTACCGCGCCAGCCCAGGAGAACCCGGAAGCCAGCAGCTCTTGTTTCTCTGTGTGTTTCTGTGAGGAACCACCAAATTGTTTTCCACGGCCCATAGGTGGAAGGGACTTGCCTTGTCTCGGATGAGACTTTGGACTTTGGACTGCGGACTTTTGAGTTAACACTGAAATGAATTAATGCTGAAATGAATTAAGACTTTGGGAGACGGTTGAGAAGCCATGACTCATTTTAAAATGTGAGACATGCCTTTCACCTTCTGC INS 26.16 LQ 0 other unhandled orientation ? SJEPD040_D PTGER4P2-CDK2AP2P2 chr9 66493091 - intergenic CBWD5,CBWD3 chr9 70846968 + intergenic ? 3 2 282 183 0.510 0.748 156 93 0.239 0.033 295 295 CCTGGATGTCGCTGTGGCTGCGGCCCAGCCAGGCGGTCTGCTCGGCGGCGGCTGCACCGGGGCAGGAACCGACCCTCAGCCCCATCCCCGGTGGCTGCGGACGGCCCCTGGAGCGGCCCCGACGTCTCTTCGGAGGAGAAGAGGGGTGGGAGTCACGGCCAGGCAGGCCCTCAGGCGGGAAGGGATGCGCGCCTGCGATTCCGGGACGTACCGCGCCAGCCCAGGAGAACCCGGAAGCCAGCAGCTCTTGTTTCTCTGTGTGTTTCTGTGAGGAACCACCAAATTGTTTTCCACGGCCCATAGGTGGAAGGGACTTGCCTTGTCTCGGATGAGACTTTGGACTTTGGACTGTGGACTTTTGAGTTAACACTGAAATGAATTAATGCTGAAATGAATTGAGACTTTGGGAGACGGTTGAGAAGCCATGACTCATTTTAAAATGTGAGACATGCCTTTCACCTTCTGCCATGATTGTGAG ITX 24.64 LQ 0 other unhandled orientation ? SJEPD040_D KIRREL3 chr11 126870351 - coding NA chr11 119859591 - intergenic > 3 0 153 64 0.013 0.000 158 0 0.211 0.000 154 152 CGAGAGGACCGGCGGAGGCTGAGCACCGAGAGCCGCCAAGGAAGAGAAACTAACCACAGCCAAGTTACCCCGCCGGCTTTCCTTCGCTGCGCTAAGGAATGAAACCCTTCCAGCTCGATCTGCTCTTCGTCTGCTTCTTCCTCTTCAGTCAAGGTGAGGTGACTCTGAGGCAGGAGGTCCAAGTTTGCTGGACAATGGCAGAAACAGAATTCAAAC DEL 15.80 LQ 1 CLoss ,, NM_001161707,NM_001301097,NM_032531 ,, ,, ,, 55,55,55 ,, ,, ,, ,, ,, ,, ,, ,, ,, ,, ,, ;; geneB_no_transcripts ,, ,, SJEPD040_D PSMD9 chr12 122341013 + coding DDIT3 chr12 57911537 - 5utr > 3 4 148 275 0.000 0.007 65 79 0.021 0.009 149 149 CGCCAAAGTGAACAGCATCAGCCCCGGCTCCCCAGCCAGCATCGCGGGTCTGCAAGTGGATGATGAGATTGTGGAGTTCGGCTCTGTGAACACCCAGAACTTCCAGTCACTGCATAACATTGGCAGTGTGGTGCAGCACAGTGAGGGGTGTTCAAGAAGGAAGTGTATCTTCATACATCACCACACCTGAAAGCAGATGTGCTTTTCCAGACTGATCCAACTGCAGAGATGGCAGCTGAGTCATTGCCTTTCTCCTTCGGGACACTGTCCAGCTGGGAGCTGGAAGCCTGGTATGAGGACCTGCAAGAGGTCCTGTCTTCAGATGAAAATGGGGGTACCTATGTTTCACCTCCTGGAAATGAAGAGGAAGAATCAAAAATCTTCACCACTCTTGACCCTGCTTCTCTGGCTTGGCTGACTGAGGT ITX 12.97 LQ 2 Fusion 1,1,0,0,0,0,0,0,1,1,0,0 NM_001261400,NM_002813,NM_001261400,NM_002813,NM_001261400,NM_002813,NM_001261400,NM_002813,NM_001261400,NM_002813,NM_001261400,NM_002813 81,186,,,,,,,81,186,, 2,4,2,4,2,4,2,4,2,4,2,4 tuple,tuple,,,,,,,tuple,tuple,, 240,555,240,555,240,555,240,555,240,555,240,555 48,48,,,,,,,48,48,, 147,147,,,,,,,147,147,, NM_001195053,NM_001195053,NM_001195054,NM_001195054,NM_001195055,NM_001195055,NM_001195056,NM_001195056,NM_001195057,NM_001195057,NM_004083,NM_004083 -55,-55,-38,-38,-30,-30,-92,-92,-21,-21,-26,-26 2,2,2,2,2,2,2,2,2,2,2,2 tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple ,,,,,,,,,,, 579,579,579,579,579,579,579,579,510,510,510,510 52,52,51,51,52,52,52,52,52,52,52,52 157,157,,,,,,,157,157,, AKVNSISPGSPASIAGLQVDDEIVEFGSVNTQNFQSLHNIGSVVQHSEGCSRRKCIFIHHHT*KQMCFSRLIQLQRWQLSHCLSPSGHCPAGSWKPGMRTCKRSCLQMKMGVPMFHLLEMKRKNQKSSPLLTLLLWLG*LR,AKVNSISPGSPASIAGLQVDDEIVEFGSVNTQNFQSLHNIGSVVQHSEGCSRRKCIFIHHHT*KQMCFSRLIQLQRWQLSHCLSPSGHCPAGSWKPGMRTCKRSCLQMKMGVPMFHLLEMKRKNQKSSPLLTLLLWLG*LR,PK*TASAPAPQPASRVCKWMMRLWSSAL*TPRTSSHCITLAVWCSTVRGVQEGSVSSYITTPESRCAFPD*SNCRDGS*VIAFLLRDTVQLGAGSLV*GPARGPVFR*KWGYLCFTSWK*RGRIKNLHHS*PCFSGLAD*G,PK*TASAPAPQPASRVCKWMMRLWSSAL*TPRTSSHCITLAVWCSTVRGVQEGSVSSYITTPESRCAFPD*SNCRDGS*VIAFLLRDTVQLGAGSLV*GPARGPVFR*KWGYLCFTSWK*RGRIKNLHHS*PCFSGLAD*G,RQSEQHQPRLPSQHRGSASG**DCGVRLCEHPELPVTA*HWQCGAAQ*GVFKKEVYLHTSPHLKADVLFQTDPTAEMAAESLPFSFGTLSSWELEAWYEDLQEVLSSDENGGTYVSPPGNEEEESKIFTTLDPASLAWLTE,RQSEQHQPRLPSQHRGSASG**DCGVRLCEHPELPVTA*HWQCGAAQ*GVFKKEVYLHTSPHLKADVLFQTDPTAEMAAESLPFSFGTLSSWELEAWYEDLQEVLSSDENGGTYVSPPGNEEEESKIFTTLDPASLAWLTE,RQSEQHQPRLPSQHRGSASG**DCGVRLCEHPELPVTA*HWQCGAAQ*GVFKKEVYLHTSPHLKADVLFQTDPTAEMAAESLPFSFGTLSSWELEAWYEDLQEVLSSDENGGTYVSPPGNEEEESKIFTTLDPASLAWLTE,RQSEQHQPRLPSQHRGSASG**DCGVRLCEHPELPVTA*HWQCGAAQ*GVFKKEVYLHTSPHLKADVLFQTDPTAEMAAESLPFSFGTLSSWELEAWYEDLQEVLSSDENGGTYVSPPGNEEEESKIFTTLDPASLAWLTE,AKVNSISPGSPASIAGLQVDDEIVEFGSVNTQNFQSLHNIGSVVQHSEGCSRRKCIFIHHHT*KQMCFSRLIQLQRWQLSHCLSPSGHCPAGSWKPGMRTCKRSCLQMKMGVPMFHLLEMKRKNQKSSPLLTLLLWLG*LR,AKVNSISPGSPASIAGLQVDDEIVEFGSVNTQNFQSLHNIGSVVQHSEGCSRRKCIFIHHHT*KQMCFSRLIQLQRWQLSHCLSPSGHCPAGSWKPGMRTCKRSCLQMKMGVPMFHLLEMKRKNQKSSPLLTLLLWLG*LR,RQSEQHQPRLPSQHRGSASG**DCGVRLCEHPELPVTA*HWQCGAAQ*GVFKKEVYLHTSPHLKADVLFQTDPTAEMAAESLPFSFGTLSSWELEAWYEDLQEVLSSDENGGTYVSPPGNEEEESKIFTTLDPASLAWLTE,RQSEQHQPRLPSQHRGSASG**DCGVRLCEHPELPVTA*HWQCGAAQ*GVFKKEVYLHTSPHLKADVLFQTDPTAEMAAESLPFSFGTLSSWELEAWYEDLQEVLSSDENGGTYVSPPGNEEEESKIFTTLDPASLAWLTE PSMD9:NM_001261400[1,2]-DDIT3:NM_001195053[2,4];PSMD9:NM_002813[1,4]-DDIT3:NM_001195053[2,4];PSMD9:NM_001261400[1,2]-DDIT3:NM_001195054[2,4];PSMD9:NM_002813[1,4]-DDIT3:NM_001195054[2,4];PSMD9:NM_001261400[1,2]-DDIT3:NM_001195055[2,4];PSMD9:NM_002813[1,4]-DDIT3:NM_001195055[2,4];PSMD9:NM_001261400[1,2]-DDIT3:NM_001195056[2,3];PSMD9:NM_002813[1,4]-DDIT3:NM_001195056[2,3];PSMD9:NM_001261400[1,2]-DDIT3:NM_001195057[2,4];PSMD9:NM_002813[1,4]-DDIT3:NM_001195057[2,4];PSMD9:NM_001261400[1,2]-DDIT3:NM_004083[2,4];PSMD9:NM_002813[1,4]-DDIT3:NM_004083[2,4] geneB_blat_issues=too_many_mismatches;ERROR_geneB_multiple_matching_frames=NM_001195057 geneB_transcripts=NM_001195053,NM_001195054,NM_001195055,NM_001195056,NM_001195057,NM_004083;geneb_utr_codons=13 CSR,CSR,,,,,,,CSR,CSR,, 1,1,2,2,0,0,0,0,1,1,0,0 SJEPD040_D PRPF19 chr11 60668053 - coding HMCES chr3 128998561 + 5utr > 4 0 348 86 0.000 0.000 128 0 0.015 0.000 349 361 GGATTTGAGTGAGCTGGTGGGAATGACCCAGAGATTATTCAGAAGCTTCAAGACAAAGCCACTGTGCTAACCACGGAGCGCAAGAAGAGAGGGAAGACTGTGCCTGAGGAGCTGGTGAAGCCAGAAGAGCTCAGCAAATACCGGCAGGTGGCATCCCACGTGGGGTTGCACAGTGCCAGCATTCCTGGGATCCTGGCCCTGGACCTCTGCCCGTCCGACACCAACAAGATCCTCACTGGTGGGGCGGATAAAAATGTCGTTGTGTTTGACAAAAGTTCTGAACAAATCCTGGCTACCCTCAAAGGCCATACCAAGAAGGTCACCAGCGTGGTGTTTCACCCTTCCCAGGACCTGGTGACCGGGCGCTGTTGAAGAATGTGTGGGCGAACATCCTGTCACTTACCTAGAGATGTTCTCACGAGAGCTTGCGCCTACCAGGATCGGCGG CTX 8.33 LQ 2 upTSS 0,0,2,2 NM_014502,NM_014502,, 280,280,, 10,10,, tuple,tuple,, 828,828,, 118,118,, 356,356,, NM_001006109,NM_020187,NM_001006109,NM_020187 -4,-4,-4,-4 2,2,, tuple,tuple,tuple,tuple ,,, 1065,1065,1065,1065 123,123,, 369,369,, GFE*AGGNDPEIIQKLQDKATVLTTERKKRGKTVPEELVKPEELSKYRQVASHVGLHSASIPGILALDLCPSDTNKILTGGADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPSQDLVTGRC*RMCGRTSCHLPRDVLTRACAYQDRR,GFE*AGGNDPEIIQKLQDKATVLTTERKKRGKTVPEELVKPEELSKYRQVASHVGLHSASIPGILALDLCPSDTNKILTGGADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPSQDLVTGRC*RMCGRTSCHLPRDVLTRACAYQDRR,, PRPF19:NM_014502[1,10]-HMCES:NM_001006109[2,7];PRPF19:NM_014502[1,10]-HMCES:NM_020187[2,7];; geneB_transcripts=NM_001006109,NM_020187;geneb_utr_codons=5;not_inframe_due_to_intermediate_stop_codon TGRC,TGRC,, 0,0,, SJEPD040_D GGT3P chr22 18746674 + intergenic TMEM191B chr22 20351718 + intergenic ? 5 0 158 128 0.000 0.745 612 1 0.133 0.000 171 171 CTAACTACCACTGGCAGGAAACTGCATATCTTCTGGTTTACATGAAGATGGAGTGCTAATGGAAATGCCCAAAACCTTCAGAGAATGACAGCGTGTCAATCTCTGAAGGTTTTGGGCATTTCCATTAGCACTCCATCTTCATGTAAACCAGAAGATATGCAGTATCCTGCCAGTGGTAGTTAGGATTTCCGTAGGTACACTGGATGTCTTCCCAGGACACCAAGCAAATATTGGAGTCATTGAAGCAGAACCATTTTCCATCCACAGCATTCCGGATGTAGACACAGTAATGACCGGAG DEL 7.82 LQ 0 other unhandled orientation ? SJEPD040_D TRA2A chr7 23571406 - coding PSIP1 chr9 15506635 - coding > 0 2 57 316 0.000 0.000 0 62 0.000 0.017 58 56 CTGGGGAACGCCTCGTCGACATGAGTGATGTGGAGGAAAACAACTTCGAGGGCAGAGTAGACGAAGTTCCTGATGGAGCTGTAAAGCCACCCACAAACAAACTACCCATTTTCTTTTTTGGAACTCATGAGACTGCTTTTTTAGGACCAAAGGATATATTTCCTTACTCAGAAAATAAGGAAAAGTATGGCAAACCAAATAAAAGAAAAGGTTTTAATGAAGGTTTATGGGAGATAGATAACAATCCAAAAGTGAAATTTTCAAGTCAACAGGCAGCAACTAAACAATCAAATGCATCATCTGATGTTGAAGTTGAAGAAAAGGAAACTAGTGTTTCAAAGGAAGATACCGACCATGAAGAAAAAGCCAGCA CTX 7.05 LQ 2 Fusion 0,0,0,1,0,0,0,1,0,0,0,1 NM_001282757,NM_001282758,NM_001282759,NM_013293,NM_001282757,NM_001282758,NM_001282759,NM_013293,NM_001282757,NM_001282758,NM_001282759,NM_013293 ,,,13,,,,13,,,,13 1,1,1,1,1,1,1,1,1,1,1,1 ,,,tuple,,,,tuple,,,,tuple ,,,36,,,,36,,,,36 ,,,17,,,,17,,,,17 ,,,55,,,,55,,,,55 NM_001128217,NM_001128217,NM_001128217,NM_001128217,NM_021144,NM_021144,NM_021144,NM_021144,NM_033222,NM_033222,NM_033222,NM_033222 25,25,25,25,25,25,25,25,25,25,25,25 3,3,3,3,2,2,2,2,3,3,3,3 tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 73,73,73,73,73,73,73,73,73,73,73,73 1593,1593,1593,1593,1002,1002,1002,1002,1593,1593,1593,1593 18,18,18,18,18,18,18,18,18,18,18,18 ,,,56,,,,56,,,,56 GERLVDMSDVEENNFEGRVDEVPDGAVKPPTNKLPIFFFGTHETAFLGPKDIFPYSENKEKYGKPNKRKGFNEGLWEIDNNPKVKFSSQQAATKQSNASSDVEVEEKETSVSKEDTDHEEKAS,GERLVDMSDVEENNFEGRVDEVPDGAVKPPTNKLPIFFFGTHETAFLGPKDIFPYSENKEKYGKPNKRKGFNEGLWEIDNNPKVKFSSQQAATKQSNASSDVEVEEKETSVSKEDTDHEEKAS,GERLVDMSDVEENNFEGRVDEVPDGAVKPPTNKLPIFFFGTHETAFLGPKDIFPYSENKEKYGKPNKRKGFNEGLWEIDNNPKVKFSSQQAATKQSNASSDVEVEEKETSVSKEDTDHEEKAS,GERLVDMSDVEENNFEGRVDEVPDGAVKPPTNKLPIFFFGTHETAFLGPKDIFPYSENKEKYGKPNKRKGFNEGLWEIDNNPKVKFSSQQAATKQSNASSDVEVEEKETSVSKEDTDHEEKAS,GERLVDMSDVEENNFEGRVDEVPDGAVKPPTNKLPIFFFGTHETAFLGPKDIFPYSENKEKYGKPNKRKGFNEGLWEIDNNPKVKFSSQQAATKQSNASSDVEVEEKETSVSKEDTDHEEKAS,GERLVDMSDVEENNFEGRVDEVPDGAVKPPTNKLPIFFFGTHETAFLGPKDIFPYSENKEKYGKPNKRKGFNEGLWEIDNNPKVKFSSQQAATKQSNASSDVEVEEKETSVSKEDTDHEEKAS,GERLVDMSDVEENNFEGRVDEVPDGAVKPPTNKLPIFFFGTHETAFLGPKDIFPYSENKEKYGKPNKRKGFNEGLWEIDNNPKVKFSSQQAATKQSNASSDVEVEEKETSVSKEDTDHEEKAS,GERLVDMSDVEENNFEGRVDEVPDGAVKPPTNKLPIFFFGTHETAFLGPKDIFPYSENKEKYGKPNKRKGFNEGLWEIDNNPKVKFSSQQAATKQSNASSDVEVEEKETSVSKEDTDHEEKAS,GERLVDMSDVEENNFEGRVDEVPDGAVKPPTNKLPIFFFGTHETAFLGPKDIFPYSENKEKYGKPNKRKGFNEGLWEIDNNPKVKFSSQQAATKQSNASSDVEVEEKETSVSKEDTDHEEKAS,GERLVDMSDVEENNFEGRVDEVPDGAVKPPTNKLPIFFFGTHETAFLGPKDIFPYSENKEKYGKPNKRKGFNEGLWEIDNNPKVKFSSQQAATKQSNASSDVEVEEKETSVSKEDTDHEEKAS,GERLVDMSDVEENNFEGRVDEVPDGAVKPPTNKLPIFFFGTHETAFLGPKDIFPYSENKEKYGKPNKRKGFNEGLWEIDNNPKVKFSSQQAATKQSNASSDVEVEEKETSVSKEDTDHEEKAS,GERLVDMSDVEENNFEGRVDEVPDGAVKPPTNKLPIFFFGTHETAFLGPKDIFPYSENKEKYGKPNKRKGFNEGLWEIDNNPKVKFSSQQAATKQSNASSDVEVEEKETSVSKEDTDHEEKAS TRA2A:NM_001282757[1,1]-PSIP1:NM_001128217[3,16];TRA2A:NM_001282758[1,1]-PSIP1:NM_001128217[3,16];TRA2A:NM_001282759[1,1]-PSIP1:NM_001128217[3,16];TRA2A:NM_013293[1,1]-PSIP1:NM_001128217[3,16];TRA2A:NM_001282757[1,1]-PSIP1:NM_021144[2,10];TRA2A:NM_001282758[1,1]-PSIP1:NM_021144[2,10];TRA2A:NM_001282759[1,1]-PSIP1:NM_021144[2,10];TRA2A:NM_013293[1,1]-PSIP1:NM_021144[2,10];TRA2A:NM_001282757[1,1]-PSIP1:NM_033222[3,16];TRA2A:NM_001282758[1,1]-PSIP1:NM_033222[3,16];TRA2A:NM_001282759[1,1]-PSIP1:NM_033222[3,16];TRA2A:NM_013293[1,1]-PSIP1:NM_033222[3,16] geneB_transcripts=NM_001128217,NM_021144,NM_033222 ,,,,,,,,,,, 2,2,2,2,2,2,2,2,2,2,2,2 SJEPD040_D WDR6 chr3 49052151 + coding CALR chr19 13050886 + coding > 23 0 278 64 0.041 0.000 220 0 0.011 0.000 279 284 CTTGACCAGCCCGGCCTTGGCCCCCTTGTGGCTGCAGCCTGTAGTGATGGGGCCGTAAGGATTCTGGGCGGATTCTGCAGCTCCTTGCTGAAACCTTCCACCATAAGCGATGTGTCCTCAAGGTCCACTCCTTTACACACGAGGCACCCAACCAGAGGCGGAGGCTCCTCCTGTGCAGCGCAGCTACTGATGGCAGCCTGGCTTTCTGGGATCTCACCACCATGCTAGACCATGACTCCACTGTCCTGGAGCCTCCAGTGGATCCTGGGCTTCCCTACCGGCTTGGCACCAAGAAGGTTCATGTCATCTTCAACTACAAGGGCAAGAACGTGCTGATCAACAAGGAC CTX 4.79 LQ 2 Fusion 1 NM_018031 1000 5 tuple 2992 93 283 NM_004343 139 4 blat 417 1254 94 284 *PARPWPPCGCSL**WGRKDSGRILQLLAETFHHKRCVLKVHSFTHEAPNQRRRLLLCSAATDGSLAFWDLTTMLDHDSTVLEPPVDPGLPYRLGTKKVHVIFNYKGKNVLINKD WDR6:NM_018031[1,5]-CALR:NM_004343[4,9] geneB_transcripts=NM_004343;reannotated geneB from CALR,MIR6515 to CALR 2 SJEPD040_D LMX1B chr9 129458697 + coding PTGDS chr9 139871961 + 5utr > 2 49 208 86 0.000 0.044 141 45 0.010 0.184 209 209 GCAGCAGATCGTGGCCATGGAACAGAGCCCCTACGGCAGCAGCGACCCCTTCCAGCAGGGCCTCACGCCGCCCCAAATGCCAGGGAACGACTCCATCTTCCATGACATCGACAGCGATACCTCCTTAACCAGCCTCAGCGACTGCTTCCTCGGCTCCTCAGACGTGGGCTCCCTGCAGGCCCGCGTGGGGAACCCCATCGACCGGCTCCTCCTGCACACCTCCCTCGCTCTCCCACACCACTGGCACCAGGCCCCGGACACCCGCTCTGCTGCAGGAGAATGGCTACTCATCAC DEL 4.57 LQ 0 CLoss 0,0,0,0 NM_001174146,NM_001174147,NM_002316, ,,, 8,8,8, ,,, 1188,1176,1155, ,,, ,,, NM_000954,NM_000954,NM_000954,NM_000954 -23,-23,-23,-23 1,1,1, tuple,tuple,tuple,tuple ,,, 573,573,573,573 72,72,72, ,,, AADRGHGTEPLRQQRPLPAGPHAAPNARERLHLP*HRQRYLLNQPQRLLPRLLRRGLPAGPRGEPHRPAPPAHLPRSPTPLAPGPGHPLCCRRMATHH,AADRGHGTEPLRQQRPLPAGPHAAPNARERLHLP*HRQRYLLNQPQRLLPRLLRRGLPAGPRGEPHRPAPPAHLPRSPTPLAPGPGHPLCCRRMATHH,AADRGHGTEPLRQQRPLPAGPHAAPNARERLHLP*HRQRYLLNQPQRLLPRLLRRGLPAGPRGEPHRPAPPAHLPRSPTPLAPGPGHPLCCRRMATHH, LMX1B:NM_001174146[1,8]-PTGDS:NM_000954[1,7];LMX1B:NM_001174147[1,8]-PTGDS:NM_000954[1,7];LMX1B:NM_002316[1,8]-PTGDS:NM_000954[1,7]; geneB_transcripts=NM_000954;geneb_utr_codons=13 ,,, 0,0,0, SJEPD040_D KLHL22 chr22 20819579 - coding GPR56 chr16 57690447 + coding > 0 1 90 454 0.000 0.004 1 86 0.000 0.009 90 87 CTACTCCCTCCTCAGCAGCAATCGCCTGGAGGTCTCCTGCGAGACCGAGGTATATGAGGGGGCCCTTCTCTACCATTATAGCCTGAGCAGTGCTGGGTGTGAGACCGTCAGGAGGGAAACCCAAACATCCTGCTTCTGCAACCACTTGACCTACTTTGCAGTGCTGATGGTCTCCTCGGTGGAGGTGGACGCCGTGCACAAGCACTACCTGAGCCTCCTCTCCTACGTGGGCTGTGTCGTCTCTGCCCTGGCCTGCCTTGTCACCATTGCCGCCTACCTCTGCTCCAGGAGGAAACCTCGGGACTACACCATCAAGGTGCACATGAACCTGCTGCTGGCCGTCTTCCTGCTGGACACGAGCTTCCTGCTCAGCGAGCCGGTGGCCCTGACAGGCTCTGAGGCTGGCTGCCGAGCCAGTGCCATCTTCCTGCACTTCTCCCTGCTCACCTGCCTTTCCTGGATGGGCCTCGAGGGGTACAACCTCTACCGACTCGTGGTGGAGGTCTTTGGCACCTATGTCCCTGGCTACCTACTCAAGCTGG CTX 0.55 LQ 2 Fusion 1,1,1,1,1,1,1,1,1,1,1 NM_032775,NM_032775,NM_032775,NM_032775,NM_032775,NM_032775,NM_032775,NM_032775,NM_032775,NM_032775,NM_032775 225,225,225,225,225,225,225,225,225,225,225 4,4,4,4,4,4,4,4,4,4,4 perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect 678,678,678,678,678,678,678,678,678,678,678 27,27,27,27,27,27,27,27,27,27,27 84,84,84,84,84,84,84,84,84,84,84 NM_001145770,NM_001145771,NM_001145772,NM_001145773,NM_001145774,NM_001290142,NM_001290143,NM_001290144,NM_005682,NM_201524,NM_201525 362,362,362,367,362,192,187,187,362,362,362 10,10,10,9,10,9,9,9,10,10,9 tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 1085,1085,1085,1100,1085,575,560,560,1085,1085,1085 2064,2082,2064,2079,2064,1572,1557,1539,2082,2064,2064 28,28,28,28,28,28,28,28,28,28,28 85,85,85,85,85,85,85,85,85,85,85 YSLLSSNRLEVSCETEVYEGALLYHYSLSSAGCETVRRETQTSCFCNHLTYFAVLMVSSVEVDAVHKHYLSLLSYVGCVVSALACLVTIAAYLCSRRKPRDYTIKVHMNLLLAVFLLDTSFLLSEPVALTGSEAGCRASAIFLHFSLLTCLSWMGLEGYNLYRLVVEVFGTYVPGYLLKL,YSLLSSNRLEVSCETEVYEGALLYHYSLSSAGCETVRRETQTSCFCNHLTYFAVLMVSSVEVDAVHKHYLSLLSYVGCVVSALACLVTIAAYLCSRRKPRDYTIKVHMNLLLAVFLLDTSFLLSEPVALTGSEAGCRASAIFLHFSLLTCLSWMGLEGYNLYRLVVEVFGTYVPGYLLKL,YSLLSSNRLEVSCETEVYEGALLYHYSLSSAGCETVRRETQTSCFCNHLTYFAVLMVSSVEVDAVHKHYLSLLSYVGCVVSALACLVTIAAYLCSRRKPRDYTIKVHMNLLLAVFLLDTSFLLSEPVALTGSEAGCRASAIFLHFSLLTCLSWMGLEGYNLYRLVVEVFGTYVPGYLLKL,YSLLSSNRLEVSCETEVYEGALLYHYSLSSAGCETVRRETQTSCFCNHLTYFAVLMVSSVEVDAVHKHYLSLLSYVGCVVSALACLVTIAAYLCSRRKPRDYTIKVHMNLLLAVFLLDTSFLLSEPVALTGSEAGCRASAIFLHFSLLTCLSWMGLEGYNLYRLVVEVFGTYVPGYLLKL,YSLLSSNRLEVSCETEVYEGALLYHYSLSSAGCETVRRETQTSCFCNHLTYFAVLMVSSVEVDAVHKHYLSLLSYVGCVVSALACLVTIAAYLCSRRKPRDYTIKVHMNLLLAVFLLDTSFLLSEPVALTGSEAGCRASAIFLHFSLLTCLSWMGLEGYNLYRLVVEVFGTYVPGYLLKL,YSLLSSNRLEVSCETEVYEGALLYHYSLSSAGCETVRRETQTSCFCNHLTYFAVLMVSSVEVDAVHKHYLSLLSYVGCVVSALACLVTIAAYLCSRRKPRDYTIKVHMNLLLAVFLLDTSFLLSEPVALTGSEAGCRASAIFLHFSLLTCLSWMGLEGYNLYRLVVEVFGTYVPGYLLKL,YSLLSSNRLEVSCETEVYEGALLYHYSLSSAGCETVRRETQTSCFCNHLTYFAVLMVSSVEVDAVHKHYLSLLSYVGCVVSALACLVTIAAYLCSRRKPRDYTIKVHMNLLLAVFLLDTSFLLSEPVALTGSEAGCRASAIFLHFSLLTCLSWMGLEGYNLYRLVVEVFGTYVPGYLLKL,YSLLSSNRLEVSCETEVYEGALLYHYSLSSAGCETVRRETQTSCFCNHLTYFAVLMVSSVEVDAVHKHYLSLLSYVGCVVSALACLVTIAAYLCSRRKPRDYTIKVHMNLLLAVFLLDTSFLLSEPVALTGSEAGCRASAIFLHFSLLTCLSWMGLEGYNLYRLVVEVFGTYVPGYLLKL,YSLLSSNRLEVSCETEVYEGALLYHYSLSSAGCETVRRETQTSCFCNHLTYFAVLMVSSVEVDAVHKHYLSLLSYVGCVVSALACLVTIAAYLCSRRKPRDYTIKVHMNLLLAVFLLDTSFLLSEPVALTGSEAGCRASAIFLHFSLLTCLSWMGLEGYNLYRLVVEVFGTYVPGYLLKL,YSLLSSNRLEVSCETEVYEGALLYHYSLSSAGCETVRRETQTSCFCNHLTYFAVLMVSSVEVDAVHKHYLSLLSYVGCVVSALACLVTIAAYLCSRRKPRDYTIKVHMNLLLAVFLLDTSFLLSEPVALTGSEAGCRASAIFLHFSLLTCLSWMGLEGYNLYRLVVEVFGTYVPGYLLKL,YSLLSSNRLEVSCETEVYEGALLYHYSLSSAGCETVRRETQTSCFCNHLTYFAVLMVSSVEVDAVHKHYLSLLSYVGCVVSALACLVTIAAYLCSRRKPRDYTIKVHMNLLLAVFLLDTSFLLSEPVALTGSEAGCRASAIFLHFSLLTCLSWMGLEGYNLYRLVVEVFGTYVPGYLLKL KLHL22:NM_032775[1,4]-GPR56:NM_001145770[10,15];KLHL22:NM_032775[1,4]-GPR56:NM_001145771[10,15];KLHL22:NM_032775[1,4]-GPR56:NM_001145772[10,15];KLHL22:NM_032775[1,4]-GPR56:NM_001145773[9,14];KLHL22:NM_032775[1,4]-GPR56:NM_001145774[10,15];KLHL22:NM_032775[1,4]-GPR56:NM_001290142[9,14];KLHL22:NM_032775[1,4]-GPR56:NM_001290143[9,14];KLHL22:NM_032775[1,4]-GPR56:NM_001290144[9,14];KLHL22:NM_032775[1,4]-GPR56:NM_005682[10,15];KLHL22:NM_032775[1,4]-GPR56:NM_201524[10,15];KLHL22:NM_032775[1,4]-GPR56:NM_201525[9,14] geneB_transcripts=NM_001145770,NM_001145771,NM_001145772,NM_001145773,NM_001145774,NM_001290142,NM_001290143,NM_001290144,NM_005682,NM_201524,NM_201525 ,,,,,,,,,, 1,1,1,1,1,1,1,1,1,1,1 SJEPD040_D EGFR chr7 55221826 + coding EGFR chr7 55221775 + coding > 2 0 274 40 0.000 0.000 65 1 0.021 0.000 275 274 CTGGGGTGCAGGAGAGGAGAACTGCCAGAAACTGACCAAAATCATCTGTGCCCAGCAGTGCTCCGGGCGCTGCCGTGGCAAGTCCCCCAGTGACTGCTGCCACAACCAGTGTGCTGCAGGCTGCACAGGCCCCCGGGAGAGCGACTGCCTGGTCTGCCGCAAATTCCGAGACGAAGCCACGTGCAAGGACACCTGCCCCCCACTCATGCTCTACAACCCCACCACGTACCAGATGGATGTGAACCCCGAGGGCAAATACAGCTTTGGTGCCACCACGTACCAGATGGATGTGAACCCCGAGGGCAAATACAGC Internal_dup 0.08 LQ 2 ITD 1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1 NM_005228,NM_201282,NM_201283,NM_201284,NM_005228,NM_201282,NM_201283,NM_201284,NM_005228,NM_201282,NM_201283,NM_201284,NM_005228,NM_201282,NM_201283,NM_201284 273,273,273,273,273,273,273,273,273,273,273,273,273,273,273,273 7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7 perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect 870,870,870,870,870,870,870,870,870,870,870,870,870,870,870,870 72,72,72,72,72,72,72,72,72,72,72,72,72,72,72,72 219,219,219,219,219,219,219,219,219,219,219,219,219,219,219,219 NM_005228,NM_005228,NM_005228,NM_005228,NM_201282,NM_201282,NM_201282,NM_201282,NM_201283,NM_201283,NM_201283,NM_201283,NM_201284,NM_201284,NM_201284,NM_201284 273,273,273,273,273,273,273,273,273,273,273,273,273,273,273,273 7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7 tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 819,819,819,819,819,819,819,819,819,819,819,819,819,819,819,819 3633,3633,3633,3633,1887,1887,1887,1887,1218,1218,1218,1218,2118,2118,2118,2118 73,73,73,73,73,73,73,73,73,73,73,73,73,73,73,73 220,220,220,220,220,220,220,220,220,220,220,220,220,220,220,220 WGAGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGKYSFGATTYQMDVNPEGKYS,WGAGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGKYSFGATTYQMDVNPEGKYS,WGAGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGKYSFGATTYQMDVNPEGKYS,WGAGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGKYSFGATTYQMDVNPEGKYS,WGAGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGKYSFGATTYQMDVNPEGKYS,WGAGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGKYSFGATTYQMDVNPEGKYS,WGAGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGKYSFGATTYQMDVNPEGKYS,WGAGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGKYSFGATTYQMDVNPEGKYS,WGAGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGKYSFGATTYQMDVNPEGKYS,WGAGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGKYSFGATTYQMDVNPEGKYS,WGAGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGKYSFGATTYQMDVNPEGKYS,WGAGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGKYSFGATTYQMDVNPEGKYS,WGAGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGKYSFGATTYQMDVNPEGKYS,WGAGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGKYSFGATTYQMDVNPEGKYS,WGAGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGKYSFGATTYQMDVNPEGKYS,WGAGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGKYSFGATTYQMDVNPEGKYS EGFR:NM_005228[1,7]-EGFR:NM_005228[7,28];EGFR:NM_201282[1,7]-EGFR:NM_005228[7,28];EGFR:NM_201283[1,7]-EGFR:NM_005228[7,28];EGFR:NM_201284[1,7]-EGFR:NM_005228[7,28];EGFR:NM_005228[1,7]-EGFR:NM_201282[7,16];EGFR:NM_201282[1,7]-EGFR:NM_201282[7,16];EGFR:NM_201283[1,7]-EGFR:NM_201282[7,16];EGFR:NM_201284[1,7]-EGFR:NM_201282[7,16];EGFR:NM_005228[1,7]-EGFR:NM_201283[7,10];EGFR:NM_201282[1,7]-EGFR:NM_201283[7,10];EGFR:NM_201283[1,7]-EGFR:NM_201283[7,10];EGFR:NM_201284[1,7]-EGFR:NM_201283[7,10];EGFR:NM_005228[1,7]-EGFR:NM_201284[7,16];EGFR:NM_201282[1,7]-EGFR:NM_201284[7,16];EGFR:NM_201283[1,7]-EGFR:NM_201284[7,16];EGFR:NM_201284[1,7]-EGFR:NM_201284[7,16] geneB_transcripts=NM_005228,NM_201282,NM_201283,NM_201284;geneB_expanded_tuple_required=TTYQMDVNPEGKYSF ,,,,,,,,,,,,,,, 1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1 SJEPD040_D PARP14 chr3 122443265 + intron QKI chr6 164008324 + intergenic > 2 0 280 136 0.000 0.000 148 1 0.006 0.000 281 274 CTGGAATCAGACATTTTTCTAAGAAGCCATGTTACCTTTTAGTGGGGAATGGTAGTGAGAAACCAAAAGTCGTGTGTTGCGTGTGTTCACTGCTATCGAGGTGTTGCTGTTTCCAGGGTCTTTTGTGGCTAGAGCTAAGAAAATCATGAACTTGTATTTATGTTTTCTTTTTTTTTTTTGAGGCAAAGTTTTGCTCTGTCATTCCAGCTGGAGTGCATCAGCGTGATCATAGCTTACTGCAGCTTCCAACTCCTGGGCTCAAGCAATCCTCCCCACTCAGAATTTCCAATTAGAAAGGCACATATTTAAGGTGCTGCATAAATTTTCTCATGTATCCATATTTCTCTGTCAGCATAACGCAGGCTCTCTGGAATATGGCTGCTTTCTCACTCTGGAGATTTTAGACAGGAT CTX 0.05 LQ 3 other 0,0,0,0,0 NM_017554,NM_017554,NM_017554,NM_017554,NM_017554 ,,,, ,,,, ,,,, 4942,4942,4942,4942,4942 ,,,, ,,,, NM_006775,NM_206855,NM_206854,NM_206853,NM_001301085 ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ;;;; geneB_no_transcripts ,,,, ,,,, SJEPD040_D GAPDH chr12 6646760 + coding SYT1 chr12 79844081 - 3utr > 0 1 164 326 0.826 0.000 0 169 0.000 0.007 164 169 TCTGCTGATGCCCCCATGTTCGTCATGGGTGTGAACCATGAGAAGTATGACAACAGCCTCAAGATCATCAGCAATGCCTCCTGCACCACCAACTGCTTAGCACCCCTGGCCAAGGTCATCCATGACAACTTTGGTATCGTGGAAGGACTCATGACCACAGTCCACACCCGTTGGTTTTTGTTTTTGTTTTTCTTTCATCTTTTGATGGGATTACAATACTGTCTGTTTACCACAAAGTAATTTTGTGTAATAAGCACAGATTGTTGTGTTAAAAATATCCTGCATTCCTTCTAACCTGGTTTTATATAATAAAATATTTTGTTACAAACTCTAATGTGCAAACCTTTTGGAATTATTGTAGGTGTGAAATCTGGAACAGAATTCACAGGATGTACATTTTGTATAAAGGTGATAATGGAGAGCTACTTTTTTCTTTTTAAATAGTCAGGCAATATTTCATAAATGTTGACTTCTCCCCTTAGCTTCTTCTCCCCC ITX 0.03 LQ 3 CLoss ,,,,,,,,,,,,,,, NM_001256799,NM_001256799,NM_001256799,NM_001256799,NM_001289745,NM_001289745,NM_001289745,NM_001289745,NM_001289746,NM_001289746,NM_001289746,NM_001289746,NM_002046,NM_002046,NM_002046,NM_002046 ,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,, 410,410,410,410,536,536,536,536,536,536,536,536,536,536,536,536 ,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,, NM_001135805,NM_001135806,NM_001291901,NM_005639,NM_001135805,NM_001135806,NM_001291901,NM_005639,NM_001135805,NM_001135806,NM_001291901,NM_005639,NM_001135805,NM_001135806,NM_001291901,NM_005639 ,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,, ;;;;;;;;;;;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001135805,NM_001135806,NM_001291901,NM_005639;geneB_transcript_strand_disagree=NM_001135805;geneb_utr_codons=13;geneB_transcript_strand_disagree=NM_001135806;geneB_transcript_strand_disagree=NM_001291901;geneB_transcript_strand_disagree=NM_005639 ,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,, SJEPD040_D NA chr20 32501065 - intergenic TPM3 chr1 154155635 - 5utr > 0 3 65 297 0.000 0.744 1 217 0.000 0.005 71 88 GTGAAGCGCAAGATCCAGGTTCTGCAGCAGCAGGCAGATGATGCAGAGGAGCGAGCTGATCGCCTCCAGCGAGAAGTTGAGGGAGAAAGGCAGGAACCGGAGCGCGAGCAGTAGGTGGGTGGGCACCATGGCTGGGATCACCACCATCGAGGCGGTGAAGCGCAAGATCCAGGTTCTGCAGCAGCAGGCAGATGATGCAGAGGAGCGAGCTGAGCGCCTCCAGCGAGAAGTTGAGGGAGAAAGGCGGGCCCGGGAACAGGCTGAGGCTGAGGTGGCCTCCTTGAACCGTAGGATCCAGCTGGTTGAAGAAGAGCTGGACCGTGCTCAGGAGCGCCTGGCCACTGCCCTGCAAAAGCTGGAAGAAGCTGAAAAAGCTGCTGATGAG CTX 0.03 LQ 2 upTSS 2,2,2,2,2,2,3,2,2,2,2,2,3,2,2 ,,,,,,,,,,,,,, ,,,,,,,,,,,,,, ,,,,,,,,,,,,,, ,,,,,,,,,,,,,, ,,,,,,,,,,,,,, ,,,,,,,,,,,,,, ,,,,,,,,,,,,,, NM_001043351,NM_001043351,NM_001043352,NM_001043352,NM_001043353,NM_001043353,NM_001278188,NM_001278188,NM_001278189,NM_001278189,NM_001278190,NM_001278190,NM_152263,NM_153649,NM_153649 -13,-13,-13,-13,-13,-13,-34,-34,-13,-13,-13,-13,82,-13,-13 ,,,,,,,,,,,,,, blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,tuple,blat,blat ,,,,,,,,,,,,244,, 747,747,744,744,744,744,549,549,747,747,684,684,858,747,747 ,,,,,,,,,,,,,, ,,,,,,,,,,,,,, ,,,,,,,,,,,,,, ;;;;;;;;;;;;;; geneA_no_transcript_IDs_found;ERROR_geneB_multiple_matching_frames=NM_001043351;ERROR_geneB_multiple_matching_frames=NM_001043352;ERROR_geneB_multiple_matching_frames=NM_001043353;ERROR_geneB_multiple_matching_frames=NM_001278188;ERROR_geneB_multiple_matching_frames=NM_001278189;ERROR_geneB_multiple_matching_frames=NM_001278190;ERROR_geneB_multiple_matching_frames=NM_153649 geneB_transcripts=NM_001043351,NM_001043352,NM_001043353,NM_001278188,NM_001278189,NM_001278190,NM_152263,NM_153649;geneb_utr_codons=13 ,,,,,,,,,,,,,, ,,,,,,,,,,,,,, SJEPD040_D PGK1 chrX 77378446 + coding COL1A1 chr17 48263810 - coding > 5 0 320 53 0.000 0.000 92 0 0.005 0.000 322 314 GCAAAATAGAAGCTTTCCGAGCTTCACTTTCCAAGCTAGGGGATGTCTAGGTCAATGATGCTTTTGGCACTGCTCACAGAGCCCACAGCTCCATGGTAGGAGTCGATCTGCCACAGAAGGCTGGTGGGTTTTTGATGAAGAAGGAGCTGAACTACTTTGCAAAGGCCTTGGAGAGCCCAGAGCGACCCTTCCTGGCCATCCTGGGCGGAGCTAAAGTTGCAGACAAGATCCAGCTCATCAATAATATGCTGGACAAAGTCAATGAGATGATTATTGGTGGTGGAATGGCTTTTACCTTCCTTAAGGTGCTCAACAACATGGAGATTGGTGAGACCTGCGTGTACCCCACTCAGCCCAGTGTGGCCCA CTX 0.02 LQ 2 Fusion 1 NM_000291 250 7 tuple 756 103 313 NM_000088 1291 49 blat 104 314 KIEAFRASLSKLGDV*VNDAFGTAHRAHSSMVGVDLPQKAGGFLMKKELNYFAKALESPERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGETCVYPTQPSVA PGK1:NM_000291[1,7]-COL1A1:NM_000088[49,51] geneB_CDS_mapping_exception=NM_000088:-2 geneB_transcripts=NM_000088 2 SJEPD040_D HSPA2 chr14 65008938 + coding FGFR3 chr4 1807476 + coding > 6 13 171 77 0.000 0.000 164 89 0.000 0.005 172 196 CCGTTGTCGCTGGGCATCGAGACAGCTGGCGGTGTCATGACCCCACTCATCAAGAGGAACACCACGATCCCCACCAAGCAGACGCAGACCTTCACCACCTACTCGGACAACCAGAGCAGCGTACTGGTGCAGGTATACGAGGGCGAACGGGCCATGACCAAGGACAATAACATGCTGGGCGCATGCACGCAGGGCGGGCCCCTGTACGTGCTGGTGGAGTACGCGGCCAAGGGTAACCTGCGGGAGTTTCTGCGGGCGCGGCGGCCCCCGGGGCAGGGCCAATCCTTCG CTX 0.02 LQ 2 Fusion 1,1,1 NM_021979,NM_021979,NM_021979 458,458,458 1,1,1 tuple,tuple,tuple 1371,1371,1371 56,56,56 170,170,170 NM_000142,NM_001163213,NM_022965 549,551,437 13,13,11 tuple,tuple,tuple 1646,1652,1310 2421,2427,2085 65,65,65 195,195,195 PLSLGIETAGGVMTPLIKRNTTIPTKQTQTFTTYSDNQSSVLVQVYEGERAMTKDNNMLGACTQGGPLYVLVEYAAKGNLREFLRARRPPGQGQSF,PLSLGIETAGGVMTPLIKRNTTIPTKQTQTFTTYSDNQSSVLVQVYEGERAMTKDNNMLGACTQGGPLYVLVEYAAKGNLREFLRARRPPGQGQSF,PLSLGIETAGGVMTPLIKRNTTIPTKQTQTFTTYSDNQSSVLVQVYEGERAMTKDNNMLGACTQGGPLYVLVEYAAKGNLREFLRARRPPGQGQSF HSPA2:NM_021979[1,1]-FGFR3:NM_000142[13,18];HSPA2:NM_021979[1,1]-FGFR3:NM_001163213[13,18];HSPA2:NM_021979[1,1]-FGFR3:NM_022965[11,16] geneB_transcripts=NM_000142,NM_001163213,NM_022965 MLGACTQG,MLGACTQG,MLGACTQG 0,0,0 SJEPD040_D TMEM176B chr7 150493462 - coding NUMA1 chr11 71716366 - coding > 2 0 236 295 0.569 0.000 130 0 0.005 0.000 237 236 CGCTCTGCTCGGCCGCGGGCTCCCGGAGGACTGCAGGCAGGATGACGCAAAACACGGTGATTGTGAATGGAGTTGCTATGGCCTCTAGGCCATCCCAGCCCACCCACGTCAACGTCCACATCCACCAGGAGTCAGCTTTTACACAACTGCTGAAAGCTGGAGGTTCTCTGAAGAAGTTTCTTTTTCACCCTGGGGACACTGTGCCTTCCACAGCCAGGATTGGTTATGAGCAGCTGGATGACTGGAACCGCATTGCAGAGCTGCAGCAGCGCAATCGAGTGTGCCCCCCACATCTGAAGACCTGCTATCCCCTGGAGTCCAGGCCTTCCCTGAGCCTGGGCACCATCACAGATGAGGAGATGAAAACTGGAGACCCCCAAGAGACCCTGCGCCGAGCCAGCATGCAGCCAATCCAGATAGCCGAGGGCACTGGCATCACCACCCGGCAGCAGCGCAAACGGGTCTCCCTAGAGCCCCACCAGGGCCCTGGAACTCCTGAGTCTAAGAAGGCCACCAGCTGTTTCCCACGC CTX 0.01 LQ 2 Fusion 1,1,1,1,1,1,1,1 NM_001101311,NM_001101312,NM_001101314,NM_014020,NM_001101311,NM_001101312,NM_001101314,NM_014020 65,65,65,65,65,65,65,65 2,2,2,2,2,2,2,2 tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 196,196,196,196,196,196,196,196 76,76,76,76,76,76,76,76 232,232,232,232,232,232,232,232 NM_001286561,NM_001286561,NM_001286561,NM_001286561,NM_006185,NM_006185,NM_006185,NM_006185 1900,1900,1900,1900,1914,1914,1914,1914 23,23,23,23,23,23,23,23 tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 5700,5700,5700,5700,5742,5742,5742,5742 6306,6306,6306,6306,6348,6348,6348,6348 77,77,77,77,77,77,77,77 233,233,233,233,233,233,233,233 LCSAAGSRRTAGRMTQNTVIVNGVAMASRPSQPTHVNVHIHQESAFTQLLKAGGSLKKFLFHPGDTVPSTARIGYEQLDDWNRIAELQQRNRVCPPHLKTCYPLESRPSLSLGTITDEEMKTGDPQETLRRASMQPIQIAEGTGITTRQQRKRVSLEPHQGPGTPESKKATSCFPR,LCSAAGSRRTAGRMTQNTVIVNGVAMASRPSQPTHVNVHIHQESAFTQLLKAGGSLKKFLFHPGDTVPSTARIGYEQLDDWNRIAELQQRNRVCPPHLKTCYPLESRPSLSLGTITDEEMKTGDPQETLRRASMQPIQIAEGTGITTRQQRKRVSLEPHQGPGTPESKKATSCFPR,LCSAAGSRRTAGRMTQNTVIVNGVAMASRPSQPTHVNVHIHQESAFTQLLKAGGSLKKFLFHPGDTVPSTARIGYEQLDDWNRIAELQQRNRVCPPHLKTCYPLESRPSLSLGTITDEEMKTGDPQETLRRASMQPIQIAEGTGITTRQQRKRVSLEPHQGPGTPESKKATSCFPR,LCSAAGSRRTAGRMTQNTVIVNGVAMASRPSQPTHVNVHIHQESAFTQLLKAGGSLKKFLFHPGDTVPSTARIGYEQLDDWNRIAELQQRNRVCPPHLKTCYPLESRPSLSLGTITDEEMKTGDPQETLRRASMQPIQIAEGTGITTRQQRKRVSLEPHQGPGTPESKKATSCFPR,LCSAAGSRRTAGRMTQNTVIVNGVAMASRPSQPTHVNVHIHQESAFTQLLKAGGSLKKFLFHPGDTVPSTARIGYEQLDDWNRIAELQQRNRVCPPHLKTCYPLESRPSLSLGTITDEEMKTGDPQETLRRASMQPIQIAEGTGITTRQQRKRVSLEPHQGPGTPESKKATSCFPR,LCSAAGSRRTAGRMTQNTVIVNGVAMASRPSQPTHVNVHIHQESAFTQLLKAGGSLKKFLFHPGDTVPSTARIGYEQLDDWNRIAELQQRNRVCPPHLKTCYPLESRPSLSLGTITDEEMKTGDPQETLRRASMQPIQIAEGTGITTRQQRKRVSLEPHQGPGTPESKKATSCFPR,LCSAAGSRRTAGRMTQNTVIVNGVAMASRPSQPTHVNVHIHQESAFTQLLKAGGSLKKFLFHPGDTVPSTARIGYEQLDDWNRIAELQQRNRVCPPHLKTCYPLESRPSLSLGTITDEEMKTGDPQETLRRASMQPIQIAEGTGITTRQQRKRVSLEPHQGPGTPESKKATSCFPR,LCSAAGSRRTAGRMTQNTVIVNGVAMASRPSQPTHVNVHIHQESAFTQLLKAGGSLKKFLFHPGDTVPSTARIGYEQLDDWNRIAELQQRNRVCPPHLKTCYPLESRPSLSLGTITDEEMKTGDPQETLRRASMQPIQIAEGTGITTRQQRKRVSLEPHQGPGTPESKKATSCFPR TMEM176B:NM_001101311[1,2]-NUMA1:NM_001286561[23,27];TMEM176B:NM_001101312[1,2]-NUMA1:NM_001286561[23,27];TMEM176B:NM_001101314[1,2]-NUMA1:NM_001286561[23,27];TMEM176B:NM_014020[1,2]-NUMA1:NM_001286561[23,27];TMEM176B:NM_001101311[1,2]-NUMA1:NM_006185[23,27];TMEM176B:NM_001101312[1,2]-NUMA1:NM_006185[23,27];TMEM176B:NM_001101314[1,2]-NUMA1:NM_006185[23,27];TMEM176B:NM_014020[1,2]-NUMA1:NM_006185[23,27] geneB_transcripts=NM_001286561,NM_006185 ,,,,,,, 2,2,2,2,2,2,2,2 SJEPD040_D ACTR1A chr10 104239904 + 3utr MLLT4 chr6 168352511 + coding > 4 0 401 43 0.022 0.000 72 0 0.009 0.000 403 432 TTCCAGTCTTAAGGGCACTGGCTCTCCAACACCCCTCCCTTGCTTAGGGGCCTCTGCCAAAGAAAAATTTTACCTCCTGTTTCAGAAAATCTAACCAGCAACCAGCCTGTTGATTCCAGGGCAGTGAGCAAGAGGAAAAGGGAGAAAGAGCCTGGCGGGAGTGTCTTTGAGTGTAGCTTCCAATCTCAAATGGTCCTGGAACCTGTGGACACTGTCAGCTCACCATCAGCTGGGAGAGGTGGGGCCCTGGAGGCTAAGCTTAGGTGCTGTAAACATTAGTGTAGCAAGGCAGGAGGCAGCAAGCTCCCTCTCTCCAGCCCCTAACTGAACAAACACTTCAATAAATAAAACGGTTTGAAGATGGCATTGCAACAAGAACAGATGGAAAGCGAGGTCCTGGAACCAGCAGGTGGACACTGTCAGCTCACCATCAGCCCCGCACGATCGAGCGCAGAGACTTGCAGTACATTACAG CTX 0.01 LQ 3 NLoss 0,0,0,0,0,0 NM_005736,NM_005736,NM_005736,,, ,,,,, 11,11,11,,, ,,,,, ,,,,, ,,,,, ,,,,, NM_001040000,NM_001207008,NM_001291964,NM_001040000,NM_001207008,NM_001291964 1486,1469,1445,1486,1469,1445 29,28,29,,, tuple,tuple,tuple,tuple,tuple,tuple 4456,4405,4333,4456,4405,4333 4956,5232,5346,4956,5232,5346 143,143,143,,, ,,,,, PVLRALALQHPSLA*GPLPKKNFTSCFRKSNQQPAC*FQGSEQEEKGERAWRECL*V*LPISNGPGTCGHCQLTISWERWGPGG*A*VL*TLV*QGRRQQAPSLQPLTEQTLQ*IKRFEDGIATRTDGKRGPGTSRWTLSAHHQPRTIERRDLQYIT,PVLRALALQHPSLA*GPLPKKNFTSCFRKSNQQPAC*FQGSEQEEKGERAWRECL*V*LPISNGPGTCGHCQLTISWERWGPGG*A*VL*TLV*QGRRQQAPSLQPLTEQTLQ*IKRFEDGIATRTDGKRGPGTSRWTLSAHHQPRTIERRDLQYIT,PVLRALALQHPSLA*GPLPKKNFTSCFRKSNQQPAC*FQGSEQEEKGERAWRECL*V*LPISNGPGTCGHCQLTISWERWGPGG*A*VL*TLV*QGRRQQAPSLQPLTEQTLQ*IKRFEDGIATRTDGKRGPGTSRWTLSAHHQPRTIERRDLQYIT,,, ACTR1A:NM_005736[1,11]-MLLT4:NM_001040000[29,30];ACTR1A:NM_005736[1,11]-MLLT4:NM_001207008[28,32];ACTR1A:NM_005736[1,11]-MLLT4:NM_001291964[29,33];;; geneB_transcripts=NM_001040000,NM_001207008,NM_001291964 ,,,,, 2,2,2,,, SJEPD040_D FGFR1 chr8 38273486 - coding FGFR1 chr8 38274941 - coding > 0 2 40 205 0.000 0.000 0 86 0.000 0.007 40 43 CTGCAGGCCCGGAGGCCCCCAGGGCTGGAATACTGCTACATGTTGAAGTCGGACGCAACAGAGAAAGACTTGTCAGACCTGATCTCAGAAATGGAGATGATGAAGATGATCGGGAAGCATAAGAATATCATCAACCTGCTGGGGGCCTGCACGCAGGATGGTCCCTTGTATGTCATCGTGGAGTATGCCTCCAAGGGCAACCTGCGGGAGTACCTGCAGGCCCGGAGGCCCCCAGGGCTGGAATACTG Internal_dup 0.00 LQ 2 ITD 1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1 NM_001174063,NM_001174064,NM_001174065,NM_001174066,NM_001174067,NM_015850,NM_023105,NM_023106,NM_023110,NM_001174063,NM_001174064,NM_001174065,NM_001174066,NM_001174067,NM_015850,NM_023105,NM_023106,NM_023110,NM_001174063,NM_001174064,NM_001174065,NM_001174066,NM_001174067,NM_015850,NM_023105,NM_023106,NM_023110,NM_001174063,NM_001174064,NM_001174065,NM_001174066,NM_001174067,NM_015850,NM_023105,NM_023106,NM_023110,NM_001174063,NM_001174064,NM_001174065,NM_001174066,NM_001174067,NM_015850,NM_023105,NM_023106,NM_023110,NM_001174063,NM_001174064,NM_001174065,NM_001174066,NM_001174067,NM_015850,NM_023105,NM_023106,NM_023110,NM_001174063,NM_001174064,NM_001174065,NM_001174066,NM_001174067,NM_015850,NM_023105,NM_023106,NM_023110,NM_001174063,NM_001174064,NM_001174065,NM_001174066,NM_001174067,NM_015850,NM_023105,NM_023106,NM_023110,NM_001174063,NM_001174064,NM_001174065,NM_001174066,NM_001174067,NM_015850,NM_023105,NM_023106,NM_023110 584,576,584,497,617,584,497,495,586,584,576,584,497,617,584,497,495,586,584,576,584,497,617,584,497,495,586,584,576,584,497,617,584,497,495,586,584,576,584,497,617,584,497,495,586,584,576,584,497,617,584,497,495,586,584,576,584,497,617,584,497,495,586,584,576,584,497,617,584,497,495,586,584,576,584,497,617,584,497,495,586 13,14,13,12,14,13,12,12,13,13,14,13,12,14,13,12,12,13,13,14,13,12,14,13,12,12,13,13,14,13,12,14,13,12,12,13,13,14,13,12,14,13,12,12,13,13,14,13,12,14,13,12,12,13,13,14,13,12,14,13,12,12,13,13,14,13,12,14,13,12,12,13,13,14,13,12,14,13,12,12,13 tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 1750,1726,1750,1489,1849,1750,1489,1483,1756,1750,1726,1750,1489,1849,1750,1489,1483,1756,1750,1726,1750,1489,1849,1750,1489,1483,1756,1750,1726,1750,1489,1849,1750,1489,1483,1756,1750,1726,1750,1489,1849,1750,1489,1483,1756,1750,1726,1750,1489,1849,1750,1489,1483,1756,1750,1726,1750,1489,1849,1750,1489,1483,1756,1750,1726,1750,1489,1849,1750,1489,1483,1756,1750,1726,1750,1489,1849,1750,1489,1483,1756 12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12,12 38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38 NM_001174063,NM_001174063,NM_001174063,NM_001174063,NM_001174063,NM_001174063,NM_001174063,NM_001174063,NM_001174063,NM_001174064,NM_001174064,NM_001174064,NM_001174064,NM_001174064,NM_001174064,NM_001174064,NM_001174064,NM_001174064,NM_001174065,NM_001174065,NM_001174065,NM_001174065,NM_001174065,NM_001174065,NM_001174065,NM_001174065,NM_001174065,NM_001174066,NM_001174066,NM_001174066,NM_001174066,NM_001174066,NM_001174066,NM_001174066,NM_001174066,NM_001174066,NM_001174067,NM_001174067,NM_001174067,NM_001174067,NM_001174067,NM_001174067,NM_001174067,NM_001174067,NM_001174067,NM_015850,NM_015850,NM_015850,NM_015850,NM_015850,NM_015850,NM_015850,NM_015850,NM_015850,NM_023105,NM_023105,NM_023105,NM_023105,NM_023105,NM_023105,NM_023105,NM_023105,NM_023105,NM_023106,NM_023106,NM_023106,NM_023106,NM_023106,NM_023106,NM_023106,NM_023106,NM_023106,NM_023110,NM_023110,NM_023110,NM_023110,NM_023110,NM_023110,NM_023110,NM_023110,NM_023110 516,516,516,516,516,516,516,516,516,508,508,508,508,508,508,508,508,508,516,516,516,516,516,516,516,516,516,429,429,429,429,429,429,429,429,429,549,549,549,549,549,549,549,549,549,516,516,516,516,516,516,516,516,516,429,429,429,429,429,429,429,429,429,427,427,427,427,427,427,427,427,427,518,518,518,518,518,518,518,518,518 12,12,12,12,12,12,12,12,12,13,13,13,13,13,13,13,13,13,12,12,12,12,12,12,12,12,12,11,11,11,11,11,11,11,11,11,13,13,13,13,13,13,13,13,13,12,12,12,12,12,12,12,12,12,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,12,12,12,12,12,12,12,12,12 tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 1547,1547,1547,1547,1547,1547,1547,1547,1547,1523,1523,1523,1523,1523,1523,1523,1523,1523,1547,1547,1547,1547,1547,1547,1547,1547,1547,1286,1286,1286,1286,1286,1286,1286,1286,1286,1646,1646,1646,1646,1646,1646,1646,1646,1646,1547,1547,1547,1547,1547,1547,1547,1547,1547,1286,1286,1286,1286,1286,1286,1286,1286,1286,1280,1280,1280,1280,1280,1280,1280,1280,1280,1553,1553,1553,1553,1553,1553,1553,1553,1553 2463,2463,2463,2463,2463,2463,2463,2463,2463,2439,2439,2439,2439,2439,2439,2439,2439,2439,2463,2463,2463,2463,2463,2463,2463,2463,2463,2202,2202,2202,2202,2202,2202,2202,2202,2202,2562,2562,2562,2562,2562,2562,2562,2562,2562,2463,2463,2463,2463,2463,2463,2463,2463,2463,2202,2202,2202,2202,2202,2202,2202,2202,2202,2196,2196,2196,2196,2196,2196,2196,2196,2196,2469,2469,2469,2469,2469,2469,2469,2469,2469 16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16 48,48,48,48,48,48,48,48,48,48,48,48,48,48,48,48,48,48,48,48,48,48,48,48,48,48,48,48,48,48,48,48,48,48,48,48,48,48,48,48,48,48,48,48,48,48,48,48,48,48,48,48,48,48,48,48,48,48,48,48,48,48,48,48,48,48,48,48,48,48,48,48,48,48,48,48,48,48,48,48,48 LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY,LQARRPPGLEYCYMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY FGFR1:NM_001174063[1,13]-FGFR1:NM_001174063[12,18];FGFR1:NM_001174064[1,14]-FGFR1:NM_001174063[12,18];FGFR1:NM_001174065[1,13]-FGFR1:NM_001174063[12,18];FGFR1:NM_001174066[1,12]-FGFR1:NM_001174063[12,18];FGFR1:NM_001174067[1,14]-FGFR1:NM_001174063[12,18];FGFR1:NM_015850[1,13]-FGFR1:NM_001174063[12,18];FGFR1:NM_023105[1,12]-FGFR1:NM_001174063[12,18];FGFR1:NM_023106[1,12]-FGFR1:NM_001174063[12,18];FGFR1:NM_023110[1,13]-FGFR1:NM_001174063[12,18];FGFR1:NM_001174063[1,13]-FGFR1:NM_001174064[13,19];FGFR1:NM_001174064[1,14]-FGFR1:NM_001174064[13,19];FGFR1:NM_001174065[1,13]-FGFR1:NM_001174064[13,19];FGFR1:NM_001174066[1,12]-FGFR1:NM_001174064[13,19];FGFR1:NM_001174067[1,14]-FGFR1:NM_001174064[13,19];FGFR1:NM_015850[1,13]-FGFR1:NM_001174064[13,19];FGFR1:NM_023105[1,12]-FGFR1:NM_001174064[13,19];FGFR1:NM_023106[1,12]-FGFR1:NM_001174064[13,19];FGFR1:NM_023110[1,13]-FGFR1:NM_001174064[13,19];FGFR1:NM_001174063[1,13]-FGFR1:NM_001174065[12,18];FGFR1:NM_001174064[1,14]-FGFR1:NM_001174065[12,18];FGFR1:NM_001174065[1,13]-FGFR1:NM_001174065[12,18];FGFR1:NM_001174066[1,12]-FGFR1:NM_001174065[12,18];FGFR1:NM_001174067[1,14]-FGFR1:NM_001174065[12,18];FGFR1:NM_015850[1,13]-FGFR1:NM_001174065[12,18];FGFR1:NM_023105[1,12]-FGFR1:NM_001174065[12,18];FGFR1:NM_023106[1,12]-FGFR1:NM_001174065[12,18];FGFR1:NM_023110[1,13]-FGFR1:NM_001174065[12,18];FGFR1:NM_001174063[1,13]-FGFR1:NM_001174066[11,17];FGFR1:NM_001174064[1,14]-FGFR1:NM_001174066[11,17];FGFR1:NM_001174065[1,13]-FGFR1:NM_001174066[11,17];FGFR1:NM_001174066[1,12]-FGFR1:NM_001174066[11,17];FGFR1:NM_001174067[1,14]-FGFR1:NM_001174066[11,17];FGFR1:NM_015850[1,13]-FGFR1:NM_001174066[11,17];FGFR1:NM_023105[1,12]-FGFR1:NM_001174066[11,17];FGFR1:NM_023106[1,12]-FGFR1:NM_001174066[11,17];FGFR1:NM_023110[1,13]-FGFR1:NM_001174066[11,17];FGFR1:NM_001174063[1,13]-FGFR1:NM_001174067[13,19];FGFR1:NM_001174064[1,14]-FGFR1:NM_001174067[13,19];FGFR1:NM_001174065[1,13]-FGFR1:NM_001174067[13,19];FGFR1:NM_001174066[1,12]-FGFR1:NM_001174067[13,19];FGFR1:NM_001174067[1,14]-FGFR1:NM_001174067[13,19];FGFR1:NM_015850[1,13]-FGFR1:NM_001174067[13,19];FGFR1:NM_023105[1,12]-FGFR1:NM_001174067[13,19];FGFR1:NM_023106[1,12]-FGFR1:NM_001174067[13,19];FGFR1:NM_023110[1,13]-FGFR1:NM_001174067[13,19];FGFR1:NM_001174063[1,13]-FGFR1:NM_015850[12,18];FGFR1:NM_001174064[1,14]-FGFR1:NM_015850[12,18];FGFR1:NM_001174065[1,13]-FGFR1:NM_015850[12,18];FGFR1:NM_001174066[1,12]-FGFR1:NM_015850[12,18];FGFR1:NM_001174067[1,14]-FGFR1:NM_015850[12,18];FGFR1:NM_015850[1,13]-FGFR1:NM_015850[12,18];FGFR1:NM_023105[1,12]-FGFR1:NM_015850[12,18];FGFR1:NM_023106[1,12]-FGFR1:NM_015850[12,18];FGFR1:NM_023110[1,13]-FGFR1:NM_015850[12,18];FGFR1:NM_001174063[1,13]-FGFR1:NM_023105[11,17];FGFR1:NM_001174064[1,14]-FGFR1:NM_023105[11,17];FGFR1:NM_001174065[1,13]-FGFR1:NM_023105[11,17];FGFR1:NM_001174066[1,12]-FGFR1:NM_023105[11,17];FGFR1:NM_001174067[1,14]-FGFR1:NM_023105[11,17];FGFR1:NM_015850[1,13]-FGFR1:NM_023105[11,17];FGFR1:NM_023105[1,12]-FGFR1:NM_023105[11,17];FGFR1:NM_023106[1,12]-FGFR1:NM_023105[11,17];FGFR1:NM_023110[1,13]-FGFR1:NM_023105[11,17];FGFR1:NM_001174063[1,13]-FGFR1:NM_023106[11,17];FGFR1:NM_001174064[1,14]-FGFR1:NM_023106[11,17];FGFR1:NM_001174065[1,13]-FGFR1:NM_023106[11,17];FGFR1:NM_001174066[1,12]-FGFR1:NM_023106[11,17];FGFR1:NM_001174067[1,14]-FGFR1:NM_023106[11,17];FGFR1:NM_015850[1,13]-FGFR1:NM_023106[11,17];FGFR1:NM_023105[1,12]-FGFR1:NM_023106[11,17];FGFR1:NM_023106[1,12]-FGFR1:NM_023106[11,17];FGFR1:NM_023110[1,13]-FGFR1:NM_023106[11,17];FGFR1:NM_001174063[1,13]-FGFR1:NM_023110[12,18];FGFR1:NM_001174064[1,14]-FGFR1:NM_023110[12,18];FGFR1:NM_001174065[1,13]-FGFR1:NM_023110[12,18];FGFR1:NM_001174066[1,12]-FGFR1:NM_023110[12,18];FGFR1:NM_001174067[1,14]-FGFR1:NM_023110[12,18];FGFR1:NM_015850[1,13]-FGFR1:NM_023110[12,18];FGFR1:NM_023105[1,12]-FGFR1:NM_023110[12,18];FGFR1:NM_023106[1,12]-FGFR1:NM_023110[12,18];FGFR1:NM_023110[1,13]-FGFR1:NM_023110[12,18] geneB_transcripts=NM_001174063,NM_001174064,NM_001174065,NM_001174066,NM_001174067,NM_015850,NM_023105,NM_023106,NM_023110 MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK,MLK 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 SJEPD040_D NA chr4 184302038 - intergenic CHN1 chr2 175711861 - coding > 0 3 38 300 0.568 0.000 1 78 0.000 0.009 41 40 CTCGTTTTCTTTCAGAGTTGCTCTTCTAACAAGTGATGTCAAATGCCATCCAAAGAGTCTTGGTCAGGGAGGAAAACTAATAGGGCTGCAGTTCACAAATCAAAACAAGAGGGCCGTCAGCAAGATTTATTGATAGCAGCCTTGGGAATGAAACTGGGTTCTCCAAAGTCGTCTGTGACAATCTGGCAACCTCTGAAACTCTTTGCTTATTCGCAGTTGACATCACTTGTTAGAAGAGCAACTCTGAAAGAAAACGAGCAAATTCCAAAATATGAAAAGATTCACAATTTCAAGGTGCATACATTCAGAGGGCCACACTGGTGTGAATACTGTGCCAACTGCGAATAA CTX 0.00 LQ 2 upTSS 2 NM_001206602 0 tuple 1005 geneB_breakpoint_not_mapped_to_CDS=NM_001025201;geneA_no_transcript_IDs_found;geneB_breakpoint_not_mapped_to_CDS=NM_001822 geneB_transcripts=NM_001025201,NM_001206602,NM_001822;geneB_intronic=NM_001025201;geneb_utr_codons=1;geneB_intronic=NM_001822 SJEPD040_D CNBP chr3 128915903 + intergenic CRTC1 chr19 18885727 + coding > 0 2 80 205 0.000 0.000 1 162 0.000 0.004 81 82 ATTTCCTTCTCTCTCCAAGACTGACCTGCCACAATCCATCAGGGACTATGATTTTGTTGTAAATATTTAGAAAGAAGGTGCCAGCGTGTTTGGGGACGCGTACTATGAGCAGCAGATGGCGGCCAGGCAGGCCAATGCTCTGTCCCACCAGCTGGAGCAGTTCAACATGATGGAGAACGCCATCAGCTCTAGCAGCCTGTACAGCCCGGGCTCCACACTCAACTACTCGCAGGCGGCCATGATGGGCCTCACGGGCAGCCACGGGAGCCTGCCGGACTCGCAGCAACA CTX 0.00 LQ 3 NLoss 3,3 , , , , , , , NM_001098482,NM_015321 497,481 , blat,blat 1491,1443 1953,1905 , , , ; geneA_no_transcript_IDs_found geneB_transcripts=NM_001098482,NM_015321 , , SJEPD040_D FOXP1 chr3 71542577 - 5utr GAP43 chr3 115439640 + coding > 0 2 80 246 0.000 0.000 1 131 0.000 0.004 80 80 GCAATGGTGAGGGCTTCGATCCCTTCTCTGATTTGCTGTCAGCCATGAACGGATGGATGTGATGCCTGCTAGCCAAAAGGAAGCTGTAGATGAAACCAAACCTAAGGAAAGTGCCCGGCAGGACGAGGGTAAAGAAGAGGAACCTGAGGCTGACCAAGGACATGCCTGAACTCTAAGAAATGGCTTTCCACATCCCCACCCTCCCCTCTCCTGAGCCTGTCTCTCCCTACCCTCTTCTCAGCTCCACTCTGAAGTCCCTTCCTGTCCTGCTCACGTCTGTGAGTCTGTCCTTTCCCACCCACTAGCCCTCTTTCTCTCTGTGTGGCC ITX 0.00 LQ 3 NLoss 0,0,0,0,0,0,0,0,0,0,3,3 NM_001012505,NM_001244808,NM_001244810,NM_001244816,NM_032682,NM_001012505,NM_001244808,NM_001244810,NM_001244816,NM_032682,, ,,,,,,,,,,, 3,3,3,2,3,3,3,3,2,3,, ,,,,,,,,,,, ,,,,,,,,,,, ,,,,,,,,,,, ,,,,,,,,,,, NM_001130064,NM_001130064,NM_001130064,NM_001130064,NM_001130064,NM_002045,NM_002045,NM_002045,NM_002045,NM_002045,NM_001130064,NM_002045 246,246,246,246,246,210,210,210,210,210,246,210 4,4,4,4,4,3,3,3,3,3,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 737,737,737,737,737,629,629,629,629,629,737,629 825,825,825,825,825,717,717,717,717,717,825,717 26,26,26,26,26,26,26,26,26,26,, ,,,,,,,,,,, QW*GLRSLL*FAVSHERMDVMPASQKEAVDETKPKESARQDEGKEEEPEADQGHA*TLRNGFPHPHPPLS*ACLSLPSSQLHSEVPSCPAHVCESVLSHPLALFLSVW,QW*GLRSLL*FAVSHERMDVMPASQKEAVDETKPKESARQDEGKEEEPEADQGHA*TLRNGFPHPHPPLS*ACLSLPSSQLHSEVPSCPAHVCESVLSHPLALFLSVW,QW*GLRSLL*FAVSHERMDVMPASQKEAVDETKPKESARQDEGKEEEPEADQGHA*TLRNGFPHPHPPLS*ACLSLPSSQLHSEVPSCPAHVCESVLSHPLALFLSVW,QW*GLRSLL*FAVSHERMDVMPASQKEAVDETKPKESARQDEGKEEEPEADQGHA*TLRNGFPHPHPPLS*ACLSLPSSQLHSEVPSCPAHVCESVLSHPLALFLSVW,QW*GLRSLL*FAVSHERMDVMPASQKEAVDETKPKESARQDEGKEEEPEADQGHA*TLRNGFPHPHPPLS*ACLSLPSSQLHSEVPSCPAHVCESVLSHPLALFLSVW,QW*GLRSLL*FAVSHERMDVMPASQKEAVDETKPKESARQDEGKEEEPEADQGHA*TLRNGFPHPHPPLS*ACLSLPSSQLHSEVPSCPAHVCESVLSHPLALFLSVW,QW*GLRSLL*FAVSHERMDVMPASQKEAVDETKPKESARQDEGKEEEPEADQGHA*TLRNGFPHPHPPLS*ACLSLPSSQLHSEVPSCPAHVCESVLSHPLALFLSVW,QW*GLRSLL*FAVSHERMDVMPASQKEAVDETKPKESARQDEGKEEEPEADQGHA*TLRNGFPHPHPPLS*ACLSLPSSQLHSEVPSCPAHVCESVLSHPLALFLSVW,QW*GLRSLL*FAVSHERMDVMPASQKEAVDETKPKESARQDEGKEEEPEADQGHA*TLRNGFPHPHPPLS*ACLSLPSSQLHSEVPSCPAHVCESVLSHPLALFLSVW,QW*GLRSLL*FAVSHERMDVMPASQKEAVDETKPKESARQDEGKEEEPEADQGHA*TLRNGFPHPHPPLS*ACLSLPSSQLHSEVPSCPAHVCESVLSHPLALFLSVW,, FOXP1:NM_001012505[1,3]-GAP43:NM_001130064[4,4];FOXP1:NM_001244808[1,3]-GAP43:NM_001130064[4,4];FOXP1:NM_001244810[1,3]-GAP43:NM_001130064[4,4];FOXP1:NM_001244816[1,2]-GAP43:NM_001130064[4,4];FOXP1:NM_032682[1,3]-GAP43:NM_001130064[4,4];FOXP1:NM_001012505[1,3]-GAP43:NM_002045[3,3];FOXP1:NM_001244808[1,3]-GAP43:NM_002045[3,3];FOXP1:NM_001244810[1,3]-GAP43:NM_002045[3,3];FOXP1:NM_001244816[1,2]-GAP43:NM_002045[3,3];FOXP1:NM_032682[1,3]-GAP43:NM_002045[3,3];; geneB_transcripts=NM_001130064,NM_002045 ,,,,,,,,,,, 1,1,1,1,1,1,1,1,1,1,, SJEPD040_D ABI2 chr2 204295288 - 3utr ODF2 chr9 131254990 + coding > 2 0 90 89 0.000 0.000 53 0 0.004 0.002 91 77 CGCCTCTGAGGGAGATAGGAAGTAGCTAAATGATGGAAAATATTAAACAAGATAGCTTAGAAGATTCATATTTATTCCAGATTGGAGGCTGATGAAGTAGCTGCCCAGCTAGAACGCTGTGACAAAGAGAACAAGATCCTTAAAGATGAGATGAACAAAGAGATTAAGATCGGA CTX 0.00 LQ 3 NLoss 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 NM_001282925,NM_001282926,NM_001282927,NM_001282932,NM_005759,NM_001282925,NM_001282926,NM_001282927,NM_001282932,NM_005759,NM_001282925,NM_001282926,NM_001282927,NM_001282932,NM_005759,NM_001282925,NM_001282926,NM_001282927,NM_001282932,NM_005759,NM_001282925,NM_001282926,NM_001282927,NM_001282932,NM_005759,NM_001282925,NM_001282926,NM_001282927,NM_001282932,NM_005759,NM_001282925,NM_001282926,NM_001282927,NM_001282932,NM_005759,NM_001282925,NM_001282926,NM_001282927,NM_001282932,NM_005759,NM_001282925,NM_001282926,NM_001282927,NM_001282932,NM_005759,NM_001282925,NM_001282926,NM_001282927,NM_001282932,NM_005759,NM_001282925,NM_001282926,NM_001282927,NM_001282932,NM_005759,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 11,10,9,10,10,11,10,9,10,10,11,10,9,10,10,11,10,9,10,10,11,10,9,10,10,11,10,9,10,10,11,10,9,10,10,11,10,9,10,10,11,10,9,10,10,11,10,9,10,10,11,10,9,10,10,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, NM_001242352,NM_001242352,NM_001242352,NM_001242352,NM_001242352,NM_001242353,NM_001242353,NM_001242353,NM_001242353,NM_001242353,NM_001242354,NM_001242354,NM_001242354,NM_001242354,NM_001242354,NM_002540,NM_002540,NM_002540,NM_002540,NM_002540,NM_153432,NM_153432,NM_153432,NM_153432,NM_153432,NM_153433,NM_153433,NM_153433,NM_153433,NM_153433,NM_153435,NM_153435,NM_153435,NM_153435,NM_153435,NM_153436,NM_153436,NM_153436,NM_153436,NM_153436,NM_153437,NM_153437,NM_153437,NM_153437,NM_153437,NM_153439,NM_153439,NM_153439,NM_153439,NM_153439,NM_153440,NM_153440,NM_153440,NM_153440,NM_153440,NM_001242352,NM_001242353,NM_001242354,NM_002540,NM_153432,NM_153433,NM_153435,NM_153436,NM_153437,NM_153439,NM_153440 548,548,548,548,548,553,553,553,553,553,472,472,472,472,472,529,529,529,529,529,597,597,597,597,597,553,553,553,553,553,617,617,617,617,617,553,553,553,553,553,534,534,534,534,534,578,578,578,578,578,534,534,534,534,534,548,553,472,529,597,553,617,553,534,578,534 16,16,16,16,16,16,16,16,16,16,15,15,15,15,15,18,18,18,18,18,15,15,15,15,15,16,16,16,16,16,16,16,16,16,16,15,15,15,15,15,16,16,16,16,16,15,15,15,15,15,15,15,15,15,15,,,,,,,,,,, blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat 1643,1643,1643,1643,1643,1658,1658,1658,1658,1658,1415,1415,1415,1415,1415,1586,1586,1586,1586,1586,1790,1790,1790,1790,1790,1658,1658,1658,1658,1658,1850,1850,1850,1850,1850,1658,1658,1658,1658,1658,1601,1601,1601,1601,1601,1733,1733,1733,1733,1733,1601,1601,1601,1601,1601,1643,1658,1415,1586,1790,1658,1850,1658,1601,1733,1601 2475,2475,2475,2475,2475,2490,2490,2490,2490,2490,1731,1731,1731,1731,1731,2418,2418,2418,2418,2418,2106,2106,2106,2106,2106,2490,2490,2490,2490,2490,2682,2682,2682,2682,2682,1974,1974,1974,1974,1974,1917,1917,1917,1917,1917,1962,1962,1962,1962,1962,1917,1917,1917,1917,1917,2475,2490,1731,2418,2106,2490,2682,1974,1917,1962,1917 26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, RL*GR*EVAK*WKILNKIA*KIHIYSRLEADEVAAQLERCDKENKILKDEMNKEIKIG,RL*GR*EVAK*WKILNKIA*KIHIYSRLEADEVAAQLERCDKENKILKDEMNKEIKIG,RL*GR*EVAK*WKILNKIA*KIHIYSRLEADEVAAQLERCDKENKILKDEMNKEIKIG,RL*GR*EVAK*WKILNKIA*KIHIYSRLEADEVAAQLERCDKENKILKDEMNKEIKIG,RL*GR*EVAK*WKILNKIA*KIHIYSRLEADEVAAQLERCDKENKILKDEMNKEIKIG,RL*GR*EVAK*WKILNKIA*KIHIYSRLEADEVAAQLERCDKENKILKDEMNKEIKIG,RL*GR*EVAK*WKILNKIA*KIHIYSRLEADEVAAQLERCDKENKILKDEMNKEIKIG,RL*GR*EVAK*WKILNKIA*KIHIYSRLEADEVAAQLERCDKENKILKDEMNKEIKIG,RL*GR*EVAK*WKILNKIA*KIHIYSRLEADEVAAQLERCDKENKILKDEMNKEIKIG,RL*GR*EVAK*WKILNKIA*KIHIYSRLEADEVAAQLERCDKENKILKDEMNKEIKIG,RL*GR*EVAK*WKILNKIA*KIHIYSRLEADEVAAQLERCDKENKILKDEMNKEIKIG,RL*GR*EVAK*WKILNKIA*KIHIYSRLEADEVAAQLERCDKENKILKDEMNKEIKIG,RL*GR*EVAK*WKILNKIA*KIHIYSRLEADEVAAQLERCDKENKILKDEMNKEIKIG,RL*GR*EVAK*WKILNKIA*KIHIYSRLEADEVAAQLERCDKENKILKDEMNKEIKIG,RL*GR*EVAK*WKILNKIA*KIHIYSRLEADEVAAQLERCDKENKILKDEMNKEIKIG,RL*GR*EVAK*WKILNKIA*KIHIYSRLEADEVAAQLERCDKENKILKDEMNKEIKIG,RL*GR*EVAK*WKILNKIA*KIHIYSRLEADEVAAQLERCDKENKILKDEMNKEIKIG,RL*GR*EVAK*WKILNKIA*KIHIYSRLEADEVAAQLERCDKENKILKDEMNKEIKIG,RL*GR*EVAK*WKILNKIA*KIHIYSRLEADEVAAQLERCDKENKILKDEMNKEIKIG,RL*GR*EVAK*WKILNKIA*KIHIYSRLEADEVAAQLERCDKENKILKDEMNKEIKIG,RL*GR*EVAK*WKILNKIA*KIHIYSRLEADEVAAQLERCDKENKILKDEMNKEIKIG,RL*GR*EVAK*WKILNKIA*KIHIYSRLEADEVAAQLERCDKENKILKDEMNKEIKIG,RL*GR*EVAK*WKILNKIA*KIHIYSRLEADEVAAQLERCDKENKILKDEMNKEIKIG,RL*GR*EVAK*WKILNKIA*KIHIYSRLEADEVAAQLERCDKENKILKDEMNKEIKIG,RL*GR*EVAK*WKILNKIA*KIHIYSRLEADEVAAQLERCDKENKILKDEMNKEIKIG,RL*GR*EVAK*WKILNKIA*KIHIYSRLEADEVAAQLERCDKENKILKDEMNKEIKIG,RL*GR*EVAK*WKILNKIA*KIHIYSRLEADEVAAQLERCDKENKILKDEMNKEIKIG,RL*GR*EVAK*WKILNKIA*KIHIYSRLEADEVAAQLERCDKENKILKDEMNKEIKIG,RL*GR*EVAK*WKILNKIA*KIHIYSRLEADEVAAQLERCDKENKILKDEMNKEIKIG,RL*GR*EVAK*WKILNKIA*KIHIYSRLEADEVAAQLERCDKENKILKDEMNKEIKIG,RL*GR*EVAK*WKILNKIA*KIHIYSRLEADEVAAQLERCDKENKILKDEMNKEIKIG,RL*GR*EVAK*WKILNKIA*KIHIYSRLEADEVAAQLERCDKENKILKDEMNKEIKIG,RL*GR*EVAK*WKILNKIA*KIHIYSRLEADEVAAQLERCDKENKILKDEMNKEIKIG,RL*GR*EVAK*WKILNKIA*KIHIYSRLEADEVAAQLERCDKENKILKDEMNKEIKIG,RL*GR*EVAK*WKILNKIA*KIHIYSRLEADEVAAQLERCDKENKILKDEMNKEIKIG,RL*GR*EVAK*WKILNKIA*KIHIYSRLEADEVAAQLERCDKENKILKDEMNKEIKIG,RL*GR*EVAK*WKILNKIA*KIHIYSRLEADEVAAQLERCDKENKILKDEMNKEIKIG,RL*GR*EVAK*WKILNKIA*KIHIYSRLEADEVAAQLERCDKENKILKDEMNKEIKIG,RL*GR*EVAK*WKILNKIA*KIHIYSRLEADEVAAQLERCDKENKILKDEMNKEIKIG,RL*GR*EVAK*WKILNKIA*KIHIYSRLEADEVAAQLERCDKENKILKDEMNKEIKIG,RL*GR*EVAK*WKILNKIA*KIHIYSRLEADEVAAQLERCDKENKILKDEMNKEIKIG,RL*GR*EVAK*WKILNKIA*KIHIYSRLEADEVAAQLERCDKENKILKDEMNKEIKIG,RL*GR*EVAK*WKILNKIA*KIHIYSRLEADEVAAQLERCDKENKILKDEMNKEIKIG,RL*GR*EVAK*WKILNKIA*KIHIYSRLEADEVAAQLERCDKENKILKDEMNKEIKIG,RL*GR*EVAK*WKILNKIA*KIHIYSRLEADEVAAQLERCDKENKILKDEMNKEIKIG,RL*GR*EVAK*WKILNKIA*KIHIYSRLEADEVAAQLERCDKENKILKDEMNKEIKIG,RL*GR*EVAK*WKILNKIA*KIHIYSRLEADEVAAQLERCDKENKILKDEMNKEIKIG,RL*GR*EVAK*WKILNKIA*KIHIYSRLEADEVAAQLERCDKENKILKDEMNKEIKIG,RL*GR*EVAK*WKILNKIA*KIHIYSRLEADEVAAQLERCDKENKILKDEMNKEIKIG,RL*GR*EVAK*WKILNKIA*KIHIYSRLEADEVAAQLERCDKENKILKDEMNKEIKIG,RL*GR*EVAK*WKILNKIA*KIHIYSRLEADEVAAQLERCDKENKILKDEMNKEIKIG,RL*GR*EVAK*WKILNKIA*KIHIYSRLEADEVAAQLERCDKENKILKDEMNKEIKIG,RL*GR*EVAK*WKILNKIA*KIHIYSRLEADEVAAQLERCDKENKILKDEMNKEIKIG,RL*GR*EVAK*WKILNKIA*KIHIYSRLEADEVAAQLERCDKENKILKDEMNKEIKIG,RL*GR*EVAK*WKILNKIA*KIHIYSRLEADEVAAQLERCDKENKILKDEMNKEIKIG,,,,,,,,,,, ABI2:NM_001282925[1,11]-ODF2:NM_001242352[16,21];ABI2:NM_001282926[1,10]-ODF2:NM_001242352[16,21];ABI2:NM_001282927[1,9]-ODF2:NM_001242352[16,21];ABI2:NM_001282932[1,10]-ODF2:NM_001242352[16,21];ABI2:NM_005759[1,10]-ODF2:NM_001242352[16,21];ABI2:NM_001282925[1,11]-ODF2:NM_001242353[16,21];ABI2:NM_001282926[1,10]-ODF2:NM_001242353[16,21];ABI2:NM_001282927[1,9]-ODF2:NM_001242353[16,21];ABI2:NM_001282932[1,10]-ODF2:NM_001242353[16,21];ABI2:NM_005759[1,10]-ODF2:NM_001242353[16,21];ABI2:NM_001282925[1,11]-ODF2:NM_001242354[15,16];ABI2:NM_001282926[1,10]-ODF2:NM_001242354[15,16];ABI2:NM_001282927[1,9]-ODF2:NM_001242354[15,16];ABI2:NM_001282932[1,10]-ODF2:NM_001242354[15,16];ABI2:NM_005759[1,10]-ODF2:NM_001242354[15,16];ABI2:NM_001282925[1,11]-ODF2:NM_002540[18,23];ABI2:NM_001282926[1,10]-ODF2:NM_002540[18,23];ABI2:NM_001282927[1,9]-ODF2:NM_002540[18,23];ABI2:NM_001282932[1,10]-ODF2:NM_002540[18,23];ABI2:NM_005759[1,10]-ODF2:NM_002540[18,23];ABI2:NM_001282925[1,11]-ODF2:NM_153432[15,16];ABI2:NM_001282926[1,10]-ODF2:NM_153432[15,16];ABI2:NM_001282927[1,9]-ODF2:NM_153432[15,16];ABI2:NM_001282932[1,10]-ODF2:NM_153432[15,16];ABI2:NM_005759[1,10]-ODF2:NM_153432[15,16];ABI2:NM_001282925[1,11]-ODF2:NM_153433[16,21];ABI2:NM_001282926[1,10]-ODF2:NM_153433[16,21];ABI2:NM_001282927[1,9]-ODF2:NM_153433[16,21];ABI2:NM_001282932[1,10]-ODF2:NM_153433[16,21];ABI2:NM_005759[1,10]-ODF2:NM_153433[16,21];ABI2:NM_001282925[1,11]-ODF2:NM_153435[16,21];ABI2:NM_001282926[1,10]-ODF2:NM_153435[16,21];ABI2:NM_001282927[1,9]-ODF2:NM_153435[16,21];ABI2:NM_001282932[1,10]-ODF2:NM_153435[16,21];ABI2:NM_005759[1,10]-ODF2:NM_153435[16,21];ABI2:NM_001282925[1,11]-ODF2:NM_153436[15,16];ABI2:NM_001282926[1,10]-ODF2:NM_153436[15,16];ABI2:NM_001282927[1,9]-ODF2:NM_153436[15,16];ABI2:NM_001282932[1,10]-ODF2:NM_153436[15,16];ABI2:NM_005759[1,10]-ODF2:NM_153436[15,16];ABI2:NM_001282925[1,11]-ODF2:NM_153437[16,17];ABI2:NM_001282926[1,10]-ODF2:NM_153437[16,17];ABI2:NM_001282927[1,9]-ODF2:NM_153437[16,17];ABI2:NM_001282932[1,10]-ODF2:NM_153437[16,17];ABI2:NM_005759[1,10]-ODF2:NM_153437[16,17];ABI2:NM_001282925[1,11]-ODF2:NM_153439[15,16];ABI2:NM_001282926[1,10]-ODF2:NM_153439[15,16];ABI2:NM_001282927[1,9]-ODF2:NM_153439[15,16];ABI2:NM_001282932[1,10]-ODF2:NM_153439[15,16];ABI2:NM_005759[1,10]-ODF2:NM_153439[15,16];ABI2:NM_001282925[1,11]-ODF2:NM_153440[15,16];ABI2:NM_001282926[1,10]-ODF2:NM_153440[15,16];ABI2:NM_001282927[1,9]-ODF2:NM_153440[15,16];ABI2:NM_001282932[1,10]-ODF2:NM_153440[15,16];ABI2:NM_005759[1,10]-ODF2:NM_153440[15,16];;;;;;;;;;; geneB_transcripts=NM_001242352,NM_001242353,NM_001242354,NM_002540,NM_153432,NM_153433,NM_153435,NM_153436,NM_153437,NM_153439,NM_153440 ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,,,,,,,,,,, SJEPD040_D TNRC18 chr7 5353432 + coding TP53BP1 chr15 43713288 - coding ? 0 2 40 100 0.664 0.000 0 66 0.000 0.008 40 33 GGGGGCTCTTCTTGGAACCTGGGGTGCTGCTCGGCTCCAGTCACGCCTCGTGGGCGTGGGCGAAGGGGCCGCCCACCTTCTCGGACCACTGGAACCAGAGAAACAGCTGTGCCTGGCCCCTCGGGCATAGAGG CTX 0.00 LQ 3 Fusion unhandled orientation ? SJEPD040_D ATG4B chr2 242610772 + coding NUMA1 chr11 71726893 - coding > 0 2 158 250 0.000 0.000 0 163 0.000 0.003 158 150 AGTGAGATGGGATGACAGGTTTGTCCGCTGGCTGTGGCCGGCTGGCCCCTTTCTCTTGGCCGCAGCAAGCACTGGGGTGAGGCTGCACCTAACGGCCATGTCTCACTAACAGCTGTCTCTGCTTGGAGGTGCCCTGCCCATGTTTGAGCTGGTGGAGCAGCTAAGCAGTAGCCTGAAGCAGAAGGAGCAGCAGTTGAAGGAGGTAGCGGAGAAGCAGGAGGCAACTAGGCAGGACCATGCCCAGCAACTGGCCACTGCTGCAGAGGAGCGAGAGGCCTCCTTAAGGGAGCGGGATGCGGCTCTCAAGCAGCTGGAGGCACTGGAGAAGGAGAAGGCTGCCAAGCTGGAGATTCTGCAGCAGCAACTTCAGGTGGCTAATGAAGCCCGGGACAGTGCCCAG CTX 0.00 LQ 2 Fusion 1,1,1,1 NM_013325,NM_178326,NM_013325,NM_178326 352,352,352,352 12,12,12,12 tuple,tuple,tuple,tuple 1060,1060,1060,1060 49,49,49,49 150,150,150,150 NM_001286561,NM_001286561,NM_006185,NM_006185 552,552,552,552 16,16,15,15 blat,blat,blat,blat 1656,1656,1656,1656 6306,6306,6348,6348 50,50,50,50 151,151,151,151 VRWDDRFVRWLWPAGPFLLAAASTGVRLHLTAMSH*QLSLLGGALPMFELVEQLSSSLKQKEQQLKEVAEKQEATRQDHAQQLATAAEEREASLRERDAALKQLEALEKEKAAKLEILQQQLQVANEARDSAQ,VRWDDRFVRWLWPAGPFLLAAASTGVRLHLTAMSH*QLSLLGGALPMFELVEQLSSSLKQKEQQLKEVAEKQEATRQDHAQQLATAAEEREASLRERDAALKQLEALEKEKAAKLEILQQQLQVANEARDSAQ,VRWDDRFVRWLWPAGPFLLAAASTGVRLHLTAMSH*QLSLLGGALPMFELVEQLSSSLKQKEQQLKEVAEKQEATRQDHAQQLATAAEEREASLRERDAALKQLEALEKEKAAKLEILQQQLQVANEARDSAQ,VRWDDRFVRWLWPAGPFLLAAASTGVRLHLTAMSH*QLSLLGGALPMFELVEQLSSSLKQKEQQLKEVAEKQEATRQDHAQQLATAAEEREASLRERDAALKQLEALEKEKAAKLEILQQQLQVANEARDSAQ ATG4B:NM_013325[1,12]-NUMA1:NM_001286561[16,27];ATG4B:NM_178326[1,12]-NUMA1:NM_001286561[16,27];ATG4B:NM_013325[1,12]-NUMA1:NM_006185[15,27];ATG4B:NM_178326[1,12]-NUMA1:NM_006185[15,27] geneB_transcripts=NM_001286561,NM_006185 ,,, 1,1,1,1 SJEPD040_D PAFAH1B2 chr11 117009180 - intergenic PCSK7 chr11 117077003 - coding > 0 2 32 338 0.515 0.501 1 98 0.000 0.011 90 90 CAAGGATCCAGACGAAGTGGAAACAGAGAGCAGGGGCCCTCCCACCACCTCTGACCTCCTTGCTCCAGCAGGTCTGGGGCAAGGAGGCCAGAGGAATGTGGCTTCCAATCAAGTTTGTAGGAGTGGACCCTGCCACTGGCCCCATCGGAGCCGGAAAGCCAAGGAGGAAGGGACAGAGCTAGAATCAGTGCCACTTTGCAGCAGCAAGGATCCAGACGAAGTGGAAACAGAGAGCAGGGGCCCTCCCACCACCTCTGACCTCCTTGCCCCAGACCTGCTGGAGCAAGGGGACTGGAGCCTGTCCCAGAACAAGAGCGCCCTGGACTGCCCTCATCAGCACCTAGACGTACCGCACGGGAAGGAGGAGCAGATCTGCTGACCTCGGGGCCTGACAGTGTGGGACAGGCTCTTCTTTCCCAAAATTAGGG INS 0.00 LQ 3 NLoss 0 NM_004716 690 tuple 2068 2358 geneA_no_transcript_IDs_found geneB_transcripts=NM_004716 SJEPD040_D FGFR1 chr8 38271680 - coding FGFR1 chr8 38271786 - coding > 2 0 313 31 0.000 0.000 92 0 0.008 0.000 314 331 CACCGAGAAAGGGCAGCCAGGAATGTCCTGGTGACAGAGGACAATGTGATGAAGATAGCAGACTTTGGCCTCGCACGGGACATTCACCACATCGACTACTATAAAAAGACAACCAACGGCCGACTGCCTGTGAAGTGGATGGCACCCGAGGCATTATTTGACCGGATCTACACCCACCAGAGTGATGTGTGGTCTTTCGGGGTGCTCCTGTGGGAGATCTTCACTCTGGGCGGCTCCCCATACCCCGGTGTGCCTGTGGAGGAACTTTTCAAGCTGCTGAAGGAGGGTCACCGCATGGACAAGCCCAGTAACTGCAGATCTCCCACCTGGTGGGAGATCTTCACTCTGGGCGGCTCCCCA Internal_dup 0.00 LQ 2 ITD 1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1 NM_001174063,NM_001174064,NM_001174065,NM_001174066,NM_001174067,NM_015850,NM_023105,NM_023106,NM_023110,NM_001174063,NM_001174064,NM_001174065,NM_001174066,NM_001174067,NM_015850,NM_023105,NM_023106,NM_023110,NM_001174063,NM_001174064,NM_001174065,NM_001174066,NM_001174067,NM_015850,NM_023105,NM_023106,NM_023110,NM_001174063,NM_001174064,NM_001174065,NM_001174066,NM_001174067,NM_015850,NM_023105,NM_023106,NM_023110,NM_001174063,NM_001174064,NM_001174065,NM_001174066,NM_001174067,NM_015850,NM_023105,NM_023106,NM_023110,NM_001174063,NM_001174064,NM_001174065,NM_001174066,NM_001174067,NM_015850,NM_023105,NM_023106,NM_023110,NM_001174063,NM_001174064,NM_001174065,NM_001174066,NM_001174067,NM_015850,NM_023105,NM_023106,NM_023110,NM_001174063,NM_001174064,NM_001174065,NM_001174066,NM_001174067,NM_015850,NM_023105,NM_023106,NM_023110,NM_001174063,NM_001174064,NM_001174065,NM_001174066,NM_001174067,NM_015850,NM_023105,NM_023106,NM_023110 688,680,688,601,721,688,601,599,690,688,680,688,601,721,688,601,599,690,688,680,688,601,721,688,601,599,690,688,680,688,601,721,688,601,599,690,688,680,688,601,721,688,601,599,690,688,680,688,601,721,688,601,599,690,688,680,688,601,721,688,601,599,690,688,680,688,601,721,688,601,599,690,688,680,688,601,721,688,601,599,690 16,17,16,15,17,16,15,15,16,16,17,16,15,17,16,15,15,16,16,17,16,15,17,16,15,15,16,16,17,16,15,17,16,15,15,16,16,17,16,15,17,16,15,15,16,16,17,16,15,17,16,15,15,16,16,17,16,15,17,16,15,15,16,16,17,16,15,17,16,15,15,16,16,17,16,15,17,16,15,15,16 tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 2170,2146,2170,1909,2269,2170,1909,1903,2176,2170,2146,2170,1909,2269,2170,1909,1903,2176,2170,2146,2170,1909,2269,2170,1909,1903,2176,2170,2146,2170,1909,2269,2170,1909,1903,2176,2170,2146,2170,1909,2269,2170,1909,1903,2176,2170,2146,2170,1909,2269,2170,1909,1903,2176,2170,2146,2170,1909,2269,2170,1909,1903,2176,2170,2146,2170,1909,2269,2170,1909,1903,2176,2170,2146,2170,1909,2269,2170,1909,1903,2176 68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68 206,206,206,206,206,206,206,206,206,206,206,206,206,206,206,206,206,206,206,206,206,206,206,206,206,206,206,206,206,206,206,206,206,206,206,206,206,206,206,206,206,206,206,206,206,206,206,206,206,206,206,206,206,206,206,206,206,206,206,206,206,206,206,206,206,206,206,206,206,206,206,206,206,206,206,206,206,206,206,206,206 NM_001174063,NM_001174063,NM_001174063,NM_001174063,NM_001174063,NM_001174063,NM_001174063,NM_001174063,NM_001174063,NM_001174064,NM_001174064,NM_001174064,NM_001174064,NM_001174064,NM_001174064,NM_001174064,NM_001174064,NM_001174064,NM_001174065,NM_001174065,NM_001174065,NM_001174065,NM_001174065,NM_001174065,NM_001174065,NM_001174065,NM_001174065,NM_001174066,NM_001174066,NM_001174066,NM_001174066,NM_001174066,NM_001174066,NM_001174066,NM_001174066,NM_001174066,NM_001174067,NM_001174067,NM_001174067,NM_001174067,NM_001174067,NM_001174067,NM_001174067,NM_001174067,NM_001174067,NM_015850,NM_015850,NM_015850,NM_015850,NM_015850,NM_015850,NM_015850,NM_015850,NM_015850,NM_023105,NM_023105,NM_023105,NM_023105,NM_023105,NM_023105,NM_023105,NM_023105,NM_023105,NM_023106,NM_023106,NM_023106,NM_023106,NM_023106,NM_023106,NM_023106,NM_023106,NM_023106,NM_023110,NM_023110,NM_023110,NM_023110,NM_023110,NM_023110,NM_023110,NM_023110,NM_023110 688,688,688,688,688,688,688,688,688,680,680,680,680,680,680,680,680,680,688,688,688,688,688,688,688,688,688,601,601,601,601,601,601,601,601,601,721,721,721,721,721,721,721,721,721,688,688,688,688,688,688,688,688,688,601,601,601,601,601,601,601,601,601,599,599,599,599,599,599,599,599,599,690,690,690,690,690,690,690,690,690 16,16,16,16,16,16,16,16,16,17,17,17,17,17,17,17,17,17,16,16,16,16,16,16,16,16,16,15,15,15,15,15,15,15,15,15,17,17,17,17,17,17,17,17,17,16,16,16,16,16,16,16,16,16,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,16,16,16,16,16,16,16,16,16 tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 2064,2064,2064,2064,2064,2064,2064,2064,2064,2040,2040,2040,2040,2040,2040,2040,2040,2040,2064,2064,2064,2064,2064,2064,2064,2064,2064,1803,1803,1803,1803,1803,1803,1803,1803,1803,2163,2163,2163,2163,2163,2163,2163,2163,2163,2064,2064,2064,2064,2064,2064,2064,2064,2064,1803,1803,1803,1803,1803,1803,1803,1803,1803,1797,1797,1797,1797,1797,1797,1797,1797,1797,2070,2070,2070,2070,2070,2070,2070,2070,2070 2463,2463,2463,2463,2463,2463,2463,2463,2463,2439,2439,2439,2439,2439,2439,2439,2439,2439,2463,2463,2463,2463,2463,2463,2463,2463,2463,2202,2202,2202,2202,2202,2202,2202,2202,2202,2562,2562,2562,2562,2562,2562,2562,2562,2562,2463,2463,2463,2463,2463,2463,2463,2463,2463,2202,2202,2202,2202,2202,2202,2202,2202,2202,2196,2196,2196,2196,2196,2196,2196,2196,2196,2469,2469,2469,2469,2469,2469,2469,2469,2469 69,69,69,69,69,69,69,69,69,69,69,69,69,69,69,69,69,69,69,69,69,69,69,69,69,69,69,69,69,69,69,69,69,69,69,69,69,69,69,69,69,69,69,69,69,69,69,69,69,69,69,69,69,69,69,69,69,69,69,69,69,69,69,69,69,69,69,69,69,69,69,69,69,69,69,69,69,69,69,69,69 207,207,207,207,207,207,207,207,207,207,207,207,207,207,207,207,207,207,207,207,207,207,207,207,207,207,207,207,207,207,207,207,207,207,207,207,207,207,207,207,207,207,207,207,207,207,207,207,207,207,207,207,207,207,207,207,207,207,207,207,207,207,207,207,207,207,207,207,207,207,207,207,207,207,207,207,207,207,207,207,207 HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP,HRERAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCRSPTWWEIFTLGGSP FGFR1:NM_001174063[1,16]-FGFR1:NM_001174063[16,18];FGFR1:NM_001174064[1,17]-FGFR1:NM_001174063[16,18];FGFR1:NM_001174065[1,16]-FGFR1:NM_001174063[16,18];FGFR1:NM_001174066[1,15]-FGFR1:NM_001174063[16,18];FGFR1:NM_001174067[1,17]-FGFR1:NM_001174063[16,18];FGFR1:NM_015850[1,16]-FGFR1:NM_001174063[16,18];FGFR1:NM_023105[1,15]-FGFR1:NM_001174063[16,18];FGFR1:NM_023106[1,15]-FGFR1:NM_001174063[16,18];FGFR1:NM_023110[1,16]-FGFR1:NM_001174063[16,18];FGFR1:NM_001174063[1,16]-FGFR1:NM_001174064[17,19];FGFR1:NM_001174064[1,17]-FGFR1:NM_001174064[17,19];FGFR1:NM_001174065[1,16]-FGFR1:NM_001174064[17,19];FGFR1:NM_001174066[1,15]-FGFR1:NM_001174064[17,19];FGFR1:NM_001174067[1,17]-FGFR1:NM_001174064[17,19];FGFR1:NM_015850[1,16]-FGFR1:NM_001174064[17,19];FGFR1:NM_023105[1,15]-FGFR1:NM_001174064[17,19];FGFR1:NM_023106[1,15]-FGFR1:NM_001174064[17,19];FGFR1:NM_023110[1,16]-FGFR1:NM_001174064[17,19];FGFR1:NM_001174063[1,16]-FGFR1:NM_001174065[16,18];FGFR1:NM_001174064[1,17]-FGFR1:NM_001174065[16,18];FGFR1:NM_001174065[1,16]-FGFR1:NM_001174065[16,18];FGFR1:NM_001174066[1,15]-FGFR1:NM_001174065[16,18];FGFR1:NM_001174067[1,17]-FGFR1:NM_001174065[16,18];FGFR1:NM_015850[1,16]-FGFR1:NM_001174065[16,18];FGFR1:NM_023105[1,15]-FGFR1:NM_001174065[16,18];FGFR1:NM_023106[1,15]-FGFR1:NM_001174065[16,18];FGFR1:NM_023110[1,16]-FGFR1:NM_001174065[16,18];FGFR1:NM_001174063[1,16]-FGFR1:NM_001174066[15,17];FGFR1:NM_001174064[1,17]-FGFR1:NM_001174066[15,17];FGFR1:NM_001174065[1,16]-FGFR1:NM_001174066[15,17];FGFR1:NM_001174066[1,15]-FGFR1:NM_001174066[15,17];FGFR1:NM_001174067[1,17]-FGFR1:NM_001174066[15,17];FGFR1:NM_015850[1,16]-FGFR1:NM_001174066[15,17];FGFR1:NM_023105[1,15]-FGFR1:NM_001174066[15,17];FGFR1:NM_023106[1,15]-FGFR1:NM_001174066[15,17];FGFR1:NM_023110[1,16]-FGFR1:NM_001174066[15,17];FGFR1:NM_001174063[1,16]-FGFR1:NM_001174067[17,19];FGFR1:NM_001174064[1,17]-FGFR1:NM_001174067[17,19];FGFR1:NM_001174065[1,16]-FGFR1:NM_001174067[17,19];FGFR1:NM_001174066[1,15]-FGFR1:NM_001174067[17,19];FGFR1:NM_001174067[1,17]-FGFR1:NM_001174067[17,19];FGFR1:NM_015850[1,16]-FGFR1:NM_001174067[17,19];FGFR1:NM_023105[1,15]-FGFR1:NM_001174067[17,19];FGFR1:NM_023106[1,15]-FGFR1:NM_001174067[17,19];FGFR1:NM_023110[1,16]-FGFR1:NM_001174067[17,19];FGFR1:NM_001174063[1,16]-FGFR1:NM_015850[16,18];FGFR1:NM_001174064[1,17]-FGFR1:NM_015850[16,18];FGFR1:NM_001174065[1,16]-FGFR1:NM_015850[16,18];FGFR1:NM_001174066[1,15]-FGFR1:NM_015850[16,18];FGFR1:NM_001174067[1,17]-FGFR1:NM_015850[16,18];FGFR1:NM_015850[1,16]-FGFR1:NM_015850[16,18];FGFR1:NM_023105[1,15]-FGFR1:NM_015850[16,18];FGFR1:NM_023106[1,15]-FGFR1:NM_015850[16,18];FGFR1:NM_023110[1,16]-FGFR1:NM_015850[16,18];FGFR1:NM_001174063[1,16]-FGFR1:NM_023105[15,17];FGFR1:NM_001174064[1,17]-FGFR1:NM_023105[15,17];FGFR1:NM_001174065[1,16]-FGFR1:NM_023105[15,17];FGFR1:NM_001174066[1,15]-FGFR1:NM_023105[15,17];FGFR1:NM_001174067[1,17]-FGFR1:NM_023105[15,17];FGFR1:NM_015850[1,16]-FGFR1:NM_023105[15,17];FGFR1:NM_023105[1,15]-FGFR1:NM_023105[15,17];FGFR1:NM_023106[1,15]-FGFR1:NM_023105[15,17];FGFR1:NM_023110[1,16]-FGFR1:NM_023105[15,17];FGFR1:NM_001174063[1,16]-FGFR1:NM_023106[15,17];FGFR1:NM_001174064[1,17]-FGFR1:NM_023106[15,17];FGFR1:NM_001174065[1,16]-FGFR1:NM_023106[15,17];FGFR1:NM_001174066[1,15]-FGFR1:NM_023106[15,17];FGFR1:NM_001174067[1,17]-FGFR1:NM_023106[15,17];FGFR1:NM_015850[1,16]-FGFR1:NM_023106[15,17];FGFR1:NM_023105[1,15]-FGFR1:NM_023106[15,17];FGFR1:NM_023106[1,15]-FGFR1:NM_023106[15,17];FGFR1:NM_023110[1,16]-FGFR1:NM_023106[15,17];FGFR1:NM_001174063[1,16]-FGFR1:NM_023110[16,18];FGFR1:NM_001174064[1,17]-FGFR1:NM_023110[16,18];FGFR1:NM_001174065[1,16]-FGFR1:NM_023110[16,18];FGFR1:NM_001174066[1,15]-FGFR1:NM_023110[16,18];FGFR1:NM_001174067[1,17]-FGFR1:NM_023110[16,18];FGFR1:NM_015850[1,16]-FGFR1:NM_023110[16,18];FGFR1:NM_023105[1,15]-FGFR1:NM_023110[16,18];FGFR1:NM_023106[1,15]-FGFR1:NM_023110[16,18];FGFR1:NM_023110[1,16]-FGFR1:NM_023110[16,18] geneB_transcripts=NM_001174063,NM_001174064,NM_001174065,NM_001174066,NM_001174067,NM_015850,NM_023105,NM_023106,NM_023110 ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 SJEPD040_D ELN chr7 73478124 + intron MSN chrX 64961092 + 3utr > 0 1 136 321 0.000 0.027 1 140 0.000 0.003 137 141 CGGGGGGCTTGGAGTTCCAGGTGTTGGGGGCCTTGGAGGTGAGAGTTGTTCTGAAATCAGTGAGTGTGTGTGGTGTGTGTATGCGAGACAGAGATGGAGACAGAGACAGAGACAGAGACTTTCGTTCCCACCCCTGGTCCGCCCAGGAGCATCCACCTCCTTCTCTGTCTCATGTGTGCTCTTCTTCTTTCTACAGTATTATGTACTCTACTGATATCTAAATATTGATTTCTGCCTTCCTTGCTAATGCACCATTAGAAGATATTAGTCTTGGGGCAGGATGATTTTGGCCTCATTACTTTACCACCCCCACACCTGGAAAGCATATACTATATTACAAAATGACATTTTGCCAAAATTATTAATATAAGAAGCTTTCAGTATTAGTGATGTCATCTGTCACTATAGGTCATACAATCCATTCTTAAAGTACTTGTTATTTGTTTTTATTATTACTGTTTGC CTX 0.00 LQ 3 other ,,,,,,,,,,,, NM_000501,NM_001081752,NM_001081753,NM_001081754,NM_001081755,NM_001278912,NM_001278913,NM_001278914,NM_001278915,NM_001278916,NM_001278917,NM_001278918,NM_001278939 ,,,,,,,,,,,, ,,,,,,,,,,,, ,,,,,,,,,,,, 1993,1906,1951,2008,1936,1993,1750,1921,2011,1849,1963,1726,2179 ,,,,,,,,,,,, ,,,,,,,,,,,, NM_002444,NM_002444,NM_002444,NM_002444,NM_002444,NM_002444,NM_002444,NM_002444,NM_002444,NM_002444,NM_002444,NM_002444,NM_002444 ,,,,,,,,,,,, ,,,,,,,,,,,, ,,,,,,,,,,,, ,,,,,,,,,,,, 1734,1734,1734,1734,1734,1734,1734,1734,1734,1734,1734,1734,1734 ,,,,,,,,,,,, ,,,,,,,,,,,, ,,,,,,,,,,,, ;;;;;;;;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_002444;geneb_utr_codons=13 ,,,,,,,,,,,, ,,,,,,,,,,,, SJEPD040_D TUBGCP6 chr22 50678633 - coding COL1A1 chr17 48272962 - coding > 3 0 224 36 0.000 0.000 96 1 0.005 0.000 225 224 GTCCGACTGGGCCTGCCCCCCGTGCCAGACAATGCGGACCTCTCTGGGCTGGCTATTAAGGTCCCACCGAGTGTGGATCAGTGGGAAGACGAAGGATTCCAGTCAGCGTCCAACTTGACTCCTGATTCCCAGTCTGAGCCCAGCGTGACCCCAGACGTGGACCTGTGGGAAGCCGCACTTACCTATGAGGCCAGCAAGCGGAGGTGCTGGGAGCGAGTTGGCTGCCCCCCTGGCCCTGCTGGTGCTGCTGGCCCTGCTGGAAACCCTAG CTX 0.00 LQ 2 Fusion 1 NM_020461 303 2 perfect 74 224 NM_000088 374 17 blat 75 225 VRLGLPPVPDNADLSGLAIKVPPSVDQWEDEGFQSASNLTPDSQSEPSVTPDVDLWEAALTYEASKRRCWERVGCPPGPAGAAGPAGNP TUBGCP6:NM_020461[1,2]-COL1A1:NM_000088[17,51] geneB_CDS_mapping_exception=NM_000088:-2 geneB_transcripts=NM_000088 0 SJEPD040_D MLF1 chr3 158289080 - coding TOP2B chr3 25640988 - coding ? 2 0 311 59 0.000 0.000 88 0 0.003 0.003 312 303 TTTGGATCCACTGAAAGTTGACCGAAGGTTCTTTCTAATTTCTGCATATAGTTTCTCATATTTGACACCATTTGGTCCATTGTCTGGAAAGAGCTGACATCTGTATGAGTCAAAGAATCTTCACCATCATTATGTCCTCTACGATTATGAGCTCTCCCTCTACCATCAGAGATACTGAGCAAGTCTCTTCCAAAGGGTTCAGAAAAACTTCTTATCATCTGTCGCATATTTTCTCGGTGTGCAAGAATGGACTCAGAGAAGAAGGGGTCATCCTCAAAACTGCTGTTCAGCATCCTGAACATTCTGGCTCTGAAAATGAAGGCGATTATAACCCTGGCAGGAAAACATCCAAAACAACAAG DEL 0.00 LQ 3 Fusion unhandled orientation ? SJEPD040_D CAPG chr2 85626276 - coding EZR chr6 159188509 - coding > 2 0 112 54 0.000 0.000 87 0 0.002 0.000 113 105 GGAAAGTCCAACATCCTGGAACGCAACAAGGCGAGGGACCTGGCCCTGGCCATCCGGGACAGTGAGCGACAGGGCAAGGCCCAGGTGGAGATTGTCACTGATGGGGAGGAGCTGCACCTGGTGATGACACCACCCCCCCCCCCACCACCCCCCGTGTACG CTX 0.00 LQ 2 Fusion 1,1,1,1,1,1 NM_001256139,NM_001256140,NM_001747,NM_001256139,NM_001256140,NM_001747 215,209,215,215,209,215 6,6,6,6,6,6 perfect,tuple,perfect,perfect,tuple,perfect 649,,649,649,,649 34,28,34,34,28,34 104,86,104,104,86,104 NM_001111077,NM_001111077,NM_001111077,NM_003379,NM_003379,NM_003379 460,460,460,460,460,460 13,13,13,12,12,12 blat,blat,blat,blat,blat,blat 1380,1380,1380,1380,1380,1380 1761,1761,1761,1761,1761,1761 35,35,35,35,35,35 105,105,105,105,105,105 GKSNILERNKARDLALAIRDSERQGKAQVEIVTDGEELHLVMTPPPPPPPPVY,GKSNILERNKARDLALAIRDSERQGKAQVEIVTDGEELHLVMTPPPPPPPPVY,GKSNILERNKARDLALAIRDSERQGKAQVEIVTDGEELHLVMTPPPPPPPPVY,GKSNILERNKARDLALAIRDSERQGKAQVEIVTDGEELHLVMTPPPPPPPPVY,GKSNILERNKARDLALAIRDSERQGKAQVEIVTDGEELHLVMTPPPPPPPPVY,GKSNILERNKARDLALAIRDSERQGKAQVEIVTDGEELHLVMTPPPPPPPPVY CAPG:NM_001256139[1,6]-EZR:NM_001111077[13,14];CAPG:NM_001256140[1,6]-EZR:NM_001111077[13,14];CAPG:NM_001747[1,6]-EZR:NM_001111077[13,14];CAPG:NM_001256139[1,6]-EZR:NM_003379[12,13];CAPG:NM_001256140[1,6]-EZR:NM_003379[12,13];CAPG:NM_001747[1,6]-EZR:NM_003379[12,13] geneB_transcripts=NM_001111077,NM_003379 ,EIVTDG,,,EIVTDG, 0,0,0,0,0,0 SJEPD040_D CKB chr14 103986232 - coding NACA chr12 57107469 - coding > 0 2 49 239 0.000 0.000 0 100 0.001 0.001 57 54 CGAGCTCGGAGTGAAGCTGCTCATCGAGGTGGAACAGCGGCTGGAGCAGGGCCAGGCTATGTCCAAACTGGCTCTTCGGCAGGTTACAGGAGTTACTAGAGTCACTATCCGGAAATCTAAGAATATCCTCTTTGTCATCACAAAACCAGATGTCTACAAGAGCCCTGCTTCAGATACTTACATAGTTTTTGGGGAAGCCAAGATCGAAGATTTATCCCAGCAAGCACAACTAGCAGCTGCTGAGAAATTCAAAGTTCAAGGTGAAGCTGTCTCAAACATTCAAGAAAACACAC CTX 0.00 LQ 2 Fusion 1,1 NM_001823,NM_001823 356,356 8,8 blat,blat 1115,1115 17,17 54,54 NM_001113202,NM_001113203 79,789 5,8 blat,blat 235,2365 648,2778 18,18 55,55 ELGVKLLIEVEQRLEQGQAMSKLALRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKVQGEAVSNIQENT,ELGVKLLIEVEQRLEQGQAMSKLALRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKVQGEAVSNIQENT CKB:NM_001823[1,8]-NACA:NM_001113202[5,8];CKB:NM_001823[1,8]-NACA:NM_001113203[8,11] geneB_transcripts=NM_001113202,NM_001113203 , 1,1 SJEPD040_D NA chr13 97537999 - intergenic HSP90AB1 chr6 44214837 + 5utr > 0 2 62 163 0.000 0.000 1 124 0.000 0.000 68 63 AGGAAGTGCACCATGGAGAGGAGGAGGTGGAGACTTTTGCCTTTCAGGCAGAAATTGCCCGGGTCTCTCGAGTCACTCCGGCGCAGTGTTGGGACTGTCTGGGTATCGGAAAGCAAGCCTACGTTGCTCACTATTACGTATAATCCTTTTCTTTTCAAGATGCCTGAGGAAGTGCACCATGGAGAGGAGGAGGTGGAGACTTTTGCCTTTCAGGCAGAAATTGCCCG CTX 0.00 LQ 2 upTSS 3,3,2,3,3,3 ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, NM_001271969,NM_001271969,NM_001271970,NM_001271971,NM_001271972,NM_007355 -36,-36,1,-31,-31,-31 ,,,,, blat,tuple,tuple,tuple,tuple,tuple ,,,,, 2175,2175,2175,2031,2145,2175 ,,,,, ,,,,, ,,,,, ;;;;; geneA_no_transcript_IDs_found;ERROR_geneB_multiple_matching_frames=NM_001271969 geneB_transcripts=NM_001271969,NM_001271970,NM_001271971,NM_001271972,NM_007355;geneb_utr_codons=13 ,,,,, ,,,,, SJEPD040_D KIAA1598 chr10 118783531 - intron DDX3X chrX 41207625 + 3utr > 0 3 41 465 0.000 0.000 1 106 0.000 0.000 45 67 CCCTGGATGATTTTTGGTCTAATAACGCATGCTAGTGTTGATGTTTATACTATTACAGGGGAGTCTTTAAGCCATTCCAGTCATGATGAGGTGATGTATGAATACATGCATACATTCAAAGCACTGTTTTCAAAGTTAATGCAAGTAAATACAGCAATTCCTCTTTCAACGTTTAGGCAGATCATTAATTATGAGCTAGCCAAATGTGGGCATACTATTACAGGGAAAGTTTAAAGGTCTGATAACTTGAAATAGGTTTTTAGGAGAATTCATCTACTTAGACTTTTTAAATGCCTGCCATAAATGAAGTTGAAATGGTAGATTTGCTGACCTCAGCTATGACCAGCCCTCCTTAGGGCCCTGGATGATTTTTGGTCTAATAACGCATGCTAGTGTTGATGTTTTTTGGTCAAGAGGGTATGAACAGGAAGAATTAAATGCAGCAGGCTTTATTTTAAATGCCGATTCACATTACTCTGTTCAAGCTGCGTTGAGATGTTAAACTGGCTTACTATAGACTTCGTAAAAATGG CTX 0.00 LQ 3 other ,, NM_001258300,NM_001258300,NM_001258300 ,, ,, ,, ,, ,, ,, NM_001193416,NM_001193417,NM_001356 ,, ,, ,, ,, 1986,1941,1989 ,, ,, ,, ;; geneB_no_inframe_contig_found geneB_transcripts=NM_001193416,NM_001193417,NM_001356;geneb_utr_codons=13 ,, ,, SJEPD040_D EIF4G1 chr3 184046766 + coding PKMYT1 chr16 3027033 - coding > 0 2 145 260 0.000 0.000 0 174 0.002 0.000 145 135 CGTGTGGCTCTACCTAGCGGAACTGGTAACACCCATTCTGCAGGAAGGTGGGGTGCCCATGGGGGAGCTGTTCAGGGAGATTACAAAGCCTCTGAGACCGTTGGGCAAAGCTGCTTCCCTGTTGCTGGAGATCCTGGGCCTCCTGCACTGGCCATGCCCATGCCCACGGAGGGCACCCCGCCACCTCTGAGTGGCACCCCCATCCCAGTCCCAGCCTACTTCCGCCACGCAGAACCTGGATTCTCCCTCAAGAGGCCCAGGGGGCTCAGCCGGAGCCTCCCACCTCCGCCCCCTGCCAAGGGCAGCATTCCCATCAGCCGCCTCTTCCCTCCTCGGACCCCAGGCTGGCACCAGCTGCAGCCCCGGCGGGTGTCATTCCGGGGCGAGGCCTCAGA CTX 0.00 LQ 2 upTSS 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,3,3 NM_001194946,NM_001194947,NM_001291157,NM_004953,NM_182917,NM_198241,NM_198242,NM_198244,NM_001194946,NM_001194947,NM_001291157,NM_004953,NM_182917,NM_198241,NM_198242,NM_198244,NM_001194946,NM_001194947,NM_001291157,NM_004953,NM_182917,NM_198241,NM_198242,NM_198244,,, ,,,,,,,,,,,,,,,,,,,,,,,,,, 29,28,28,21,27,28,24,25,29,28,28,21,27,28,24,25,29,28,28,21,27,28,24,25,,, ,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,3564,,,3657,,,,,3564,,,3657,,,,,3564,,,3657,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,, NM_001258451,NM_001258451,NM_001258451,NM_001258451,NM_001258451,NM_001258451,NM_001258451,NM_001258451,NM_004203,NM_004203,NM_004203,NM_004203,NM_004203,NM_004203,NM_004203,NM_004203,NM_182687,NM_182687,NM_182687,NM_182687,NM_182687,NM_182687,NM_182687,NM_182687,NM_001258451,NM_004203,NM_182687 -5,-5,-5,-5,-5,-5,-5,-5,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,-5,4,4 3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,tuple,blat,blat ,,,,,,,,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,,11,11 1473,1473,1473,1473,1473,1473,1473,1473,1500,1500,1500,1500,1500,1500,1500,1500,1443,1443,1443,1443,1443,1443,1443,1443,1473,1500,1443 48,48,48,48,48,48,48,48,46,46,46,46,46,46,46,46,46,46,46,46,46,46,46,46,,, ,,,,,,,,,,,,,,,,,,,,,,,,,, RVALPSGTGNTHSAGRWGAHGGAVQGDYKASETVGQSCFPVAGDPGPPALAMPMPTEGTPPPLSGTPIPVPAYFRHAEPGFSLKRPRGLSRSLPPPPPAKGSIPISRLFPPRTPGWHQLQPRRVSFRGEAS,RVALPSGTGNTHSAGRWGAHGGAVQGDYKASETVGQSCFPVAGDPGPPALAMPMPTEGTPPPLSGTPIPVPAYFRHAEPGFSLKRPRGLSRSLPPPPPAKGSIPISRLFPPRTPGWHQLQPRRVSFRGEAS,RVALPSGTGNTHSAGRWGAHGGAVQGDYKASETVGQSCFPVAGDPGPPALAMPMPTEGTPPPLSGTPIPVPAYFRHAEPGFSLKRPRGLSRSLPPPPPAKGSIPISRLFPPRTPGWHQLQPRRVSFRGEAS,RVALPSGTGNTHSAGRWGAHGGAVQGDYKASETVGQSCFPVAGDPGPPALAMPMPTEGTPPPLSGTPIPVPAYFRHAEPGFSLKRPRGLSRSLPPPPPAKGSIPISRLFPPRTPGWHQLQPRRVSFRGEAS,RVALPSGTGNTHSAGRWGAHGGAVQGDYKASETVGQSCFPVAGDPGPPALAMPMPTEGTPPPLSGTPIPVPAYFRHAEPGFSLKRPRGLSRSLPPPPPAKGSIPISRLFPPRTPGWHQLQPRRVSFRGEAS,RVALPSGTGNTHSAGRWGAHGGAVQGDYKASETVGQSCFPVAGDPGPPALAMPMPTEGTPPPLSGTPIPVPAYFRHAEPGFSLKRPRGLSRSLPPPPPAKGSIPISRLFPPRTPGWHQLQPRRVSFRGEAS,RVALPSGTGNTHSAGRWGAHGGAVQGDYKASETVGQSCFPVAGDPGPPALAMPMPTEGTPPPLSGTPIPVPAYFRHAEPGFSLKRPRGLSRSLPPPPPAKGSIPISRLFPPRTPGWHQLQPRRVSFRGEAS,RVALPSGTGNTHSAGRWGAHGGAVQGDYKASETVGQSCFPVAGDPGPPALAMPMPTEGTPPPLSGTPIPVPAYFRHAEPGFSLKRPRGLSRSLPPPPPAKGSIPISRLFPPRTPGWHQLQPRRVSFRGEAS,RVALPSGTGNTHSAGRWGAHGGAVQGDYKASETVGQSCFPVAGDPGPPALAMPMPTEGTPPPLSGTPIPVPAYFRHAEPGFSLKRPRGLSRSLPPPPPAKGSIPISRLFPPRTPGWHQLQPRRVSFRGEAS,RVALPSGTGNTHSAGRWGAHGGAVQGDYKASETVGQSCFPVAGDPGPPALAMPMPTEGTPPPLSGTPIPVPAYFRHAEPGFSLKRPRGLSRSLPPPPPAKGSIPISRLFPPRTPGWHQLQPRRVSFRGEAS,RVALPSGTGNTHSAGRWGAHGGAVQGDYKASETVGQSCFPVAGDPGPPALAMPMPTEGTPPPLSGTPIPVPAYFRHAEPGFSLKRPRGLSRSLPPPPPAKGSIPISRLFPPRTPGWHQLQPRRVSFRGEAS,RVALPSGTGNTHSAGRWGAHGGAVQGDYKASETVGQSCFPVAGDPGPPALAMPMPTEGTPPPLSGTPIPVPAYFRHAEPGFSLKRPRGLSRSLPPPPPAKGSIPISRLFPPRTPGWHQLQPRRVSFRGEAS,RVALPSGTGNTHSAGRWGAHGGAVQGDYKASETVGQSCFPVAGDPGPPALAMPMPTEGTPPPLSGTPIPVPAYFRHAEPGFSLKRPRGLSRSLPPPPPAKGSIPISRLFPPRTPGWHQLQPRRVSFRGEAS,RVALPSGTGNTHSAGRWGAHGGAVQGDYKASETVGQSCFPVAGDPGPPALAMPMPTEGTPPPLSGTPIPVPAYFRHAEPGFSLKRPRGLSRSLPPPPPAKGSIPISRLFPPRTPGWHQLQPRRVSFRGEAS,RVALPSGTGNTHSAGRWGAHGGAVQGDYKASETVGQSCFPVAGDPGPPALAMPMPTEGTPPPLSGTPIPVPAYFRHAEPGFSLKRPRGLSRSLPPPPPAKGSIPISRLFPPRTPGWHQLQPRRVSFRGEAS,RVALPSGTGNTHSAGRWGAHGGAVQGDYKASETVGQSCFPVAGDPGPPALAMPMPTEGTPPPLSGTPIPVPAYFRHAEPGFSLKRPRGLSRSLPPPPPAKGSIPISRLFPPRTPGWHQLQPRRVSFRGEAS,RVALPSGTGNTHSAGRWGAHGGAVQGDYKASETVGQSCFPVAGDPGPPALAMPMPTEGTPPPLSGTPIPVPAYFRHAEPGFSLKRPRGLSRSLPPPPPAKGSIPISRLFPPRTPGWHQLQPRRVSFRGEAS,RVALPSGTGNTHSAGRWGAHGGAVQGDYKASETVGQSCFPVAGDPGPPALAMPMPTEGTPPPLSGTPIPVPAYFRHAEPGFSLKRPRGLSRSLPPPPPAKGSIPISRLFPPRTPGWHQLQPRRVSFRGEAS,RVALPSGTGNTHSAGRWGAHGGAVQGDYKASETVGQSCFPVAGDPGPPALAMPMPTEGTPPPLSGTPIPVPAYFRHAEPGFSLKRPRGLSRSLPPPPPAKGSIPISRLFPPRTPGWHQLQPRRVSFRGEAS,RVALPSGTGNTHSAGRWGAHGGAVQGDYKASETVGQSCFPVAGDPGPPALAMPMPTEGTPPPLSGTPIPVPAYFRHAEPGFSLKRPRGLSRSLPPPPPAKGSIPISRLFPPRTPGWHQLQPRRVSFRGEAS,RVALPSGTGNTHSAGRWGAHGGAVQGDYKASETVGQSCFPVAGDPGPPALAMPMPTEGTPPPLSGTPIPVPAYFRHAEPGFSLKRPRGLSRSLPPPPPAKGSIPISRLFPPRTPGWHQLQPRRVSFRGEAS,RVALPSGTGNTHSAGRWGAHGGAVQGDYKASETVGQSCFPVAGDPGPPALAMPMPTEGTPPPLSGTPIPVPAYFRHAEPGFSLKRPRGLSRSLPPPPPAKGSIPISRLFPPRTPGWHQLQPRRVSFRGEAS,RVALPSGTGNTHSAGRWGAHGGAVQGDYKASETVGQSCFPVAGDPGPPALAMPMPTEGTPPPLSGTPIPVPAYFRHAEPGFSLKRPRGLSRSLPPPPPAKGSIPISRLFPPRTPGWHQLQPRRVSFRGEAS,RVALPSGTGNTHSAGRWGAHGGAVQGDYKASETVGQSCFPVAGDPGPPALAMPMPTEGTPPPLSGTPIPVPAYFRHAEPGFSLKRPRGLSRSLPPPPPAKGSIPISRLFPPRTPGWHQLQPRRVSFRGEAS,,, EIF4G1:NM_001194946[1,29]-PKMYT1:NM_001258451[3,9];EIF4G1:NM_001194947[1,28]-PKMYT1:NM_001258451[3,9];EIF4G1:NM_001291157[1,28]-PKMYT1:NM_001258451[3,9];EIF4G1:NM_004953[1,21]-PKMYT1:NM_001258451[3,9];EIF4G1:NM_182917[1,27]-PKMYT1:NM_001258451[3,9];EIF4G1:NM_198241[1,28]-PKMYT1:NM_001258451[3,9];EIF4G1:NM_198242[1,24]-PKMYT1:NM_001258451[3,9];EIF4G1:NM_198244[1,25]-PKMYT1:NM_001258451[3,9];EIF4G1:NM_001194946[1,29]-PKMYT1:NM_004203[3,9];EIF4G1:NM_001194947[1,28]-PKMYT1:NM_004203[3,9];EIF4G1:NM_001291157[1,28]-PKMYT1:NM_004203[3,9];EIF4G1:NM_004953[1,21]-PKMYT1:NM_004203[3,9];EIF4G1:NM_182917[1,27]-PKMYT1:NM_004203[3,9];EIF4G1:NM_198241[1,28]-PKMYT1:NM_004203[3,9];EIF4G1:NM_198242[1,24]-PKMYT1:NM_004203[3,9];EIF4G1:NM_198244[1,25]-PKMYT1:NM_004203[3,9];EIF4G1:NM_001194946[1,29]-PKMYT1:NM_182687[3,9];EIF4G1:NM_001194947[1,28]-PKMYT1:NM_182687[3,9];EIF4G1:NM_001291157[1,28]-PKMYT1:NM_182687[3,9];EIF4G1:NM_004953[1,21]-PKMYT1:NM_182687[3,9];EIF4G1:NM_182917[1,27]-PKMYT1:NM_182687[3,9];EIF4G1:NM_198241[1,28]-PKMYT1:NM_182687[3,9];EIF4G1:NM_198242[1,24]-PKMYT1:NM_182687[3,9];EIF4G1:NM_198244[1,25]-PKMYT1:NM_182687[3,9];;; geneB_breakpoint_not_mapped_to_CDS=NM_001258450 geneB_transcripts=NM_001258450,NM_001258451,NM_004203,NM_182687;geneB_intronic=NM_001258450;geneb_utr_codons=6 ,,,,,,,,,,,,,,,,,,,,,,,,,, 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,,, SJEPD040_D FGFR1 chr8 38271688 - coding FGFR1 chr8 38271772 + coding ? 5 2 65 36 0.000 0.143 97 73 0.000 0.000 66 66 CCCGGTGTGCCTGTGGAGGAACTTTTCAAGCTGCTGAAGGAGGGTCACCGCATGGACAAGCCCAGAGTGAAGATCTCCCACAGGAGCACCCCGAAAGACCA Internal_inv 0.00 LQ 3 Fusion unhandled orientation ? SJEPD040_D FGFR1 chr8 38271688 - coding FGFR1 chr8 38271771 + coding ? 5 2 65 37 0.000 0.119 100 71 0.000 0.000 65 65 CCCGGTGTGCCTGTGGAGGAACTTTTCAAGCTGCTGAAGGAGGGTCACCGCATGGACAAGCCCAGAGTGAAGATCTCCCACAGGAGCACCCCGAAAGACCA Internal_inv 0.00 LQ 3 Fusion unhandled orientation ? SJEPD040_D DDX43 chr6 74099777 - intergenic OOEP chr6 74079109 - coding > 16 19 235 60 0.000 0.000 522 2301 0.000 0.103 235 235 GGTGTCGCCGTGTTGCCCAGGCAGGTCTTGAACTCTTGGCTTCTGGCTTCAAGTGATCTTCCAGCCTCGGCCTCCCAAAGTGCTGGGATTACAGTCAGCCACTGCACCGGAAATGTTTTCAACCGTGACCCATAAAGGCTGGAGTGCAGTGGCGGGATCTGGGCTCAGCACAACCTCTGCCTCCCGGATTCAAGTGATTCTCCTCCCTCAGCTTCCTGAGCTGCTGGGACCACAGGCCCAGACCGAGCCATAATTCCAGAAATGGAGTGGACGAGCCAGGCCCTGCTGACAGTG read_through 230.10 RT 0 NLoss 3 NM_001080507 64 tuple 191 450 geneA_no_transcript_IDs_found geneB_transcripts=NM_001080507 SJEPD040_D LINC00910 chr17 41428826 - intergenic LINC00854 chr17 41401194 - intergenic > 0 12 93 436 0.000 0.000 1 501 0.000 0.200 94 94 TAGGAGCTGAAGGGCCACAGTGAGAGGTGACCAGAAGACGAGAGTGTGAGCCCTCATTCACGCCCAGAGAAGGGCCGCTGGAGGGCTCCTTGGCCTAGCGGTAATGCCAGTGCCTGGGAAGGCCCTGGTTACTTAGCAGGCCTTGGTCTAGCGGTGGCCCCAGTGCCTGGGAAGGCACCCGTTACTTAGCAGACCCGGAAAGGGAATCTCCCTCTCTCCAGGGGAGACAGAGAACGCTCCGCTCCACCACCTCTTGTGGGAGGTCTGACATTAGCCAGGCCGGCCCGCAGTCATCCGGAGGCTCCAACGTCTGTCTCCCTGTGATGCTGTGCTTCAGTGGTCACGCTCCTTGTTCACTTTCATGTTCAGCCTGTACACCTGGCTCCTCCTTTTAAGTTCTTAGAAGACAGCAGTAGCAGAACTAGTAGGAGTACCACAGTCTTCGATCTTTCTGATAAGTGCATAGAAGAAACGCTGACGTTTGCTGTCCTCCCTCTCCACCTCGGCTACCACAAAGGGAAAGGCCCCC read_through 50.10 RT 0 other geneB_no_transcripts SJEPD040_D NA chr1 73020894 - intergenic NA chr1 72999495 - intergenic ? 2 4 251 292 0.000 0.000 56 397 0.000 0.286 251 251 CTGCTCTGTTAGTGCTGGTATCTCTGAGTATGGAGGAGCAGTCTTTGGGTCTGGGACCCAGACCTGCATGAGGTGAGGCTCATGATATTGCCCAAGCAACTGCAAATGTCGCCCTAAAATAACCAACACATCAGCTGGTGCTTCTTCTTCTTTCAGATAATGGCCTCTTCTAACTTGAGTTGCATTCCCAGAAAAATCACAAATCAGTCCAACAATCCCCCTTGTAACTGTAGACAACCATCTGAGATTTCCTTGTCCCTGTGTTGACTTCTCAACAATCACAGTGAGCTATTGAACACTTAAGACAATCAGCTCTCCTCATTAGGTTGTGTAGATAATCTGGTAGAAAGTATTCTATGCTCCCAGTGGTTTGTAGAGTGTGCATTTCAGCATCTGCTTAACAATGAAGACTGGAAGAGACAGCAATTCAGTCGCCGGCGTCATGATGGCGCCGACCACAACTTGGAGGACTTCAAACTTACGGTGCCTCGAGAGGTAAAACGCACCGGTGAGGGAAGGCAAAGCGCCCCTCAGCTCTCTTC read_through 19.85 RT 0 other unhandled orientation ? SJINF011_D AFF1 chr4 87968747 + coding RAD51B chr14 68292179 + coding > 15 13 177 203 0.000 0.000 1011 440 0.120 0.000 178 175 AGAAGCCCACGGCTTATGTCCGGCCCATGGATGGTCAAGATCAGGCCCCTAGTGAATCCCCTGAACTGAAACCACTGCCGGAGGACTATCGACAGCAGACCTTTGAAAAAACAGACTTGAAAGTGCCTGCCAAAGCCAAGCTCACCAAACTGAAGATGCCTTCTCAGTCAGTTGAGGACTTTTTATGTCTTTCCCCACTGGAGCTTATGAAGGTGACTGGTCTGAGTTATCGAGGTGTCCATGAACTTCTATGTATGGTCAGCAGGGCCTGTGCCCCAAAGATGCAAACGGCTTATGGGATAAAAGCACAAAGGTCTGCTGATTTCTCACCAGCATTCTTATCTACTACCCTTTCTGCTTTGGACGAAGCCCTGCAT CTX 2022.00 HQ 3 Fusion 1,1,1,1,1,1 NM_001166693,NM_005935,NM_001166693,NM_005935,NM_001166693,NM_005935 354,347,354,347,354,347 4,3,4,3,4,3 perfect,perfect,perfect,perfect,perfect,perfect 1059,1038,1059,1038,1059,1038 57,57,57,57,57,57 175,175,175,175,175,175 NM_002877,NM_002877,NM_133509,NM_133509,NM_133510,NM_133510 29,29,29,29,29,29 3,3,3,3,3,3 tuple,tuple,tuple,tuple,tuple,tuple 85,85,85,85,85,85 1053,1053,1155,1155,1053,1053 58,58,58,58,58,58 176,176,176,176,176,176 KPTAYVRPMDGQDQAPSESPELKPLPEDYRQQTFEKTDLKVPAKAKLTKLKMPSQSVEDFLCLSPLELMKVTGLSYRGVHELLCMVSRACAPKMQTAYGIKAQRSADFSPAFLSTTLSALDEALH,KPTAYVRPMDGQDQAPSESPELKPLPEDYRQQTFEKTDLKVPAKAKLTKLKMPSQSVEDFLCLSPLELMKVTGLSYRGVHELLCMVSRACAPKMQTAYGIKAQRSADFSPAFLSTTLSALDEALH,KPTAYVRPMDGQDQAPSESPELKPLPEDYRQQTFEKTDLKVPAKAKLTKLKMPSQSVEDFLCLSPLELMKVTGLSYRGVHELLCMVSRACAPKMQTAYGIKAQRSADFSPAFLSTTLSALDEALH,KPTAYVRPMDGQDQAPSESPELKPLPEDYRQQTFEKTDLKVPAKAKLTKLKMPSQSVEDFLCLSPLELMKVTGLSYRGVHELLCMVSRACAPKMQTAYGIKAQRSADFSPAFLSTTLSALDEALH,KPTAYVRPMDGQDQAPSESPELKPLPEDYRQQTFEKTDLKVPAKAKLTKLKMPSQSVEDFLCLSPLELMKVTGLSYRGVHELLCMVSRACAPKMQTAYGIKAQRSADFSPAFLSTTLSALDEALH,KPTAYVRPMDGQDQAPSESPELKPLPEDYRQQTFEKTDLKVPAKAKLTKLKMPSQSVEDFLCLSPLELMKVTGLSYRGVHELLCMVSRACAPKMQTAYGIKAQRSADFSPAFLSTTLSALDEALH AFF1:NM_001166693[1,4]-RAD51B:NM_002877[3,11];AFF1:NM_005935[1,3]-RAD51B:NM_002877[3,11];AFF1:NM_001166693[1,4]-RAD51B:NM_133509[3,11];AFF1:NM_005935[1,3]-RAD51B:NM_133509[3,11];AFF1:NM_001166693[1,4]-RAD51B:NM_133510[3,11];AFF1:NM_005935[1,3]-RAD51B:NM_133510[3,11] geneB_transcripts=NM_002877,NM_133509,NM_133510 ,,,,, 2,2,2,2,2,2 SJINF011_D RAD51B chr14 68301913 + coding KMT2A chr11 118359327 + coding > 9 14 118 215 0.000 0.000 339 370 0.286 0.265 130 128 AAAGATGCAAACGGCTTATGGGATAAAAGCACAAAGGTCTGCTGATTTCTCACCAGCATTCTTATCTACTACCCTTTCTGCTTTGGACGAAGCCCTGCATGGTGGTGTGGCTTGTGGATCCCTCACAGAGTTTGTGTATTGCCAAGTCTGTTGTGAGCCCTTCCACAAGTTTTGTTTAGAGGAGAACGAGCGCCCTCTGGAGGACCAGCTGGAAAATTGGTGTTGTCGTCGTTGCAAATTCTGTCACGTTTGTGGAAGGCAACATCAGGCTACAAAGCAGCTGCTGGAGTGTAATAAGTGCCGAAACAGCTATCACCCTGAGTGCCTGGGACCAAACTACCCC CTX 1418.00 HQ 3 Fusion 1,1,1,1,1,1 NM_002877,NM_133509,NM_133510,NM_002877,NM_133509,NM_133510 106,106,106,106,106,106 4,4,4,4,4,4 perfect,perfect,perfect,perfect,perfect,perfect 315,315,315,315,315,315 42,42,42,42,42,42 129,129,129,129,129,129 NM_001197104,NM_001197104,NM_001197104,NM_005933,NM_005933,NM_005933 1445,1445,1445,1445,1445,1445 11,11,11,11,11,11 tuple,tuple,tuple,tuple,tuple,tuple 4333,4333,4333,4333,4333,4333 11919,11919,11919,11910,11910,11910 43,43,43,43,43,43 130,130,130,130,130,130 KMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEFVYCQVCCEPFHKFCLEENERPLEDQLENWCCRRCKFCHVCGRQHQATKQLLECNKCRNSYHPECLGPNYP,KMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEFVYCQVCCEPFHKFCLEENERPLEDQLENWCCRRCKFCHVCGRQHQATKQLLECNKCRNSYHPECLGPNYP,KMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEFVYCQVCCEPFHKFCLEENERPLEDQLENWCCRRCKFCHVCGRQHQATKQLLECNKCRNSYHPECLGPNYP,KMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEFVYCQVCCEPFHKFCLEENERPLEDQLENWCCRRCKFCHVCGRQHQATKQLLECNKCRNSYHPECLGPNYP,KMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEFVYCQVCCEPFHKFCLEENERPLEDQLENWCCRRCKFCHVCGRQHQATKQLLECNKCRNSYHPECLGPNYP,KMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEFVYCQVCCEPFHKFCLEENERPLEDQLENWCCRRCKFCHVCGRQHQATKQLLECNKCRNSYHPECLGPNYP RAD51B:NM_002877[1,4]-KMT2A:NM_001197104[11,36];RAD51B:NM_133509[1,4]-KMT2A:NM_001197104[11,36];RAD51B:NM_133510[1,4]-KMT2A:NM_001197104[11,36];RAD51B:NM_002877[1,4]-KMT2A:NM_005933[11,36];RAD51B:NM_133509[1,4]-KMT2A:NM_005933[11,36];RAD51B:NM_133510[1,4]-KMT2A:NM_005933[11,36] geneB_transcripts=NM_001197104,NM_005933 ,,,,, 1,1,1,1,1,1 SJINF011_D KMT2A chr11 118355690 + coding AFF1 chr4 88005270 + coding > 10 7 181 74 0.000 0.000 334 705 0.242 0.051 182 180 CAATGGCAATAGTTCTAAGCAAAAAATTCCAGCAGATGGAGTCCACAGGATCAGAGTGGACTTTAAGGAGGATTGTGAAGCAGAAAATGTGTGGGAGATGGGAGGCTTAGGAATCTTGACTTCTGTTCCTATAACACCCAGGGTGGTTTGCTTTCTCTGTGCCAGTAGTGGGCATGTAGAGCAGACCTACTCCAATGAAGTCCATTGTGTTGAAGAGATTCTGAAGGAAATGACCCATTCATGGCCGCCTCCT CTX 1195.43 HQ 4 Fusion 1,1,1,1 NM_001197104,NM_005933,NM_001197104,NM_005933 1445,1445,1445,1445 10,10,10,10 perfect,perfect,perfect,perfect 4332,4332,4332,4332 59,59,59,59 180,180,180,180 NM_001166693,NM_001166693,NM_005935,NM_005935 354,354,347,347 5,5,4,4 tuple,tuple,tuple,tuple 1060,1060,1039,1039 3657,3657,3633,3633 60,60,60,60 181,181,181,181 NGNSSKQKIPADGVHRIRVDFKEDCEAENVWEMGGLGILTSVPITPRVVCFLCASSGHVEQTYSNEVHCVEEILKEMTHSWPPP,NGNSSKQKIPADGVHRIRVDFKEDCEAENVWEMGGLGILTSVPITPRVVCFLCASSGHVEQTYSNEVHCVEEILKEMTHSWPPP,NGNSSKQKIPADGVHRIRVDFKEDCEAENVWEMGGLGILTSVPITPRVVCFLCASSGHVEQTYSNEVHCVEEILKEMTHSWPPP,NGNSSKQKIPADGVHRIRVDFKEDCEAENVWEMGGLGILTSVPITPRVVCFLCASSGHVEQTYSNEVHCVEEILKEMTHSWPPP KMT2A:NM_001197104[1,10]-AFF1:NM_001166693[5,21];KMT2A:NM_005933[1,10]-AFF1:NM_001166693[5,21];KMT2A:NM_001197104[1,10]-AFF1:NM_005935[4,20];KMT2A:NM_005933[1,10]-AFF1:NM_005935[4,20] geneB_transcripts=NM_001166693,NM_005935 ,,, 1,1,1,1 SJINF011_D AFF1 chr4 87968747 + coding RAD51B chr14 68301795 + coding > 4 1 69 71 0.000 0.000 132 29 0.120 0.000 69 66 AAACAGACTTGAAAGTGCCTGCCAAAGCCAAGCTCACCAAACTGAAGATGCCTTCTCAGTCAGTTGAGGCTTATGGGATAAAAGCACAAAGGTCTGCTGATTTCTCACCAGCATTCTTATCTACTACCCTTTCTGCT CTX 264.00 HQ 3 Fusion 1,1,1,1,1,1 NM_001166693,NM_005935,NM_001166693,NM_005935,NM_001166693,NM_005935 354,347,354,347,354,347 4,3,4,3,4,3 perfect,perfect,perfect,perfect,perfect,perfect 1059,1038,1059,1038,1059,1038 21,21,21,21,21,21 67,67,67,67,67,67 NM_002877,NM_002877,NM_133509,NM_133509,NM_133510,NM_133510 67,67,67,67,67,67 4,4,4,4,4,4 tuple,tuple,tuple,tuple,tuple,tuple 199,199,199,199,199,199 1053,1053,1155,1155,1053,1053 22,22,22,22,22,22 68,68,68,68,68,68 TDLKVPAKAKLTKLKMPSQSVEAYGIKAQRSADFSPAFLSTTLSA,TDLKVPAKAKLTKLKMPSQSVEAYGIKAQRSADFSPAFLSTTLSA,TDLKVPAKAKLTKLKMPSQSVEAYGIKAQRSADFSPAFLSTTLSA,TDLKVPAKAKLTKLKMPSQSVEAYGIKAQRSADFSPAFLSTTLSA,TDLKVPAKAKLTKLKMPSQSVEAYGIKAQRSADFSPAFLSTTLSA,TDLKVPAKAKLTKLKMPSQSVEAYGIKAQRSADFSPAFLSTTLSA AFF1:NM_001166693[1,4]-RAD51B:NM_002877[4,11];AFF1:NM_005935[1,3]-RAD51B:NM_002877[4,11];AFF1:NM_001166693[1,4]-RAD51B:NM_133509[4,11];AFF1:NM_005935[1,3]-RAD51B:NM_133509[4,11];AFF1:NM_001166693[1,4]-RAD51B:NM_133510[4,11];AFF1:NM_005935[1,3]-RAD51B:NM_133510[4,11] geneB_transcripts=NM_002877,NM_133509,NM_133510 ,,,,, 2,2,2,2,2,2 SJINF011_D KMT2A chr11 118355029 + coding AFF1 chr4 88005273 + coding > 6 4 153 168 0.000 0.000 339 93 0.098 0.000 154 152 AAACAAAAACCAAAAGAAAAGGAAAAACCACCTCCGGTCAATAAGCAGGAGAATGCAGGCACTTTGAACATCCTCAGCACTCTCTCCAATGGCAATAGTTCTAAGCAAAAAATTCCAGCAGATGGAGTCCACAGGATCAGAGTGGACTTTAAGACCTACTCCAATGAAGTCCATTGTGTTGAAGAGATTCTGAAGGAAATGACCCATTCATGGCCGCCTCCTTTGACAGCAATACATACGCCTAGTACAGCTGAGCCATCCAAGTTTCCTTTCCCTACAAAGGACTCTCAGCATGTCAGTTCTGTAACCCAAAACCAAACAGACCTACTCCAATGAAGTCCATTGTGTTGAAGAGATTCTG CTX 203.57 HQ 4 Fusion 0,0,0,0,0,0,0,0,3,0,3,0 NM_001197104,NM_005933,NM_001197104,NM_005933,NM_001197104,NM_005933,NM_001197104,NM_005933,,,, 1407,1407,,,1407,1407,,,,,, 9,9,9,9,9,9,9,9,,,, perfect,perfect,,,perfect,perfect,,,,,, 4218,4218,4218,4218,4218,4218,4218,4218,,,, 50,50,,,50,50,,,,,, 152,152,,,152,152,,,,,, NM_001166693,NM_001166693,NM_001166693,NM_001166693,NM_005935,NM_005935,NM_005935,NM_005935,NM_001166693,NM_001166693,NM_005935,NM_005935 354,354,354,354,347,347,347,347,354,354,347,347 5,5,5,5,4,4,4,4,,,, blat,blat,tuple,tuple,blat,blat,tuple,tuple,blat,tuple,blat,tuple 1061,1061,1061,1061,1040,1040,1040,1040,1061,1061,1040,1040 3657,3657,3657,3657,3633,3633,3633,3633,3657,3657,3633,3633 51,51,106,106,51,51,106,106,,,, 153,153,,,153,153,,,,,, KQKPKEKEKPPPVNKQENAGTLNILSTLSNGNSSKQKIPADGVHRIRVDFKTYSNEVHCVEEILKEMTHSWPPPLTAIHTPSTAEPSKFPFPTKDSQHVSSVTQNQTDLLQ*SPLC*RDS,KQKPKEKEKPPPVNKQENAGTLNILSTLSNGNSSKQKIPADGVHRIRVDFKTYSNEVHCVEEILKEMTHSWPPPLTAIHTPSTAEPSKFPFPTKDSQHVSSVTQNQTDLLQ*SPLC*RDS,NKNQKKRKNHLRSISRRMQAL*TSSALSPMAIVLSKKFQQMESTGSEWTLRPTPMKSIVLKRF*RK*PIHGRLL*QQYIRLVQLSHPSFLSLQRTLSMSVL*PKTKQTYSNEVHCVEEIL,NKNQKKRKNHLRSISRRMQAL*TSSALSPMAIVLSKKFQQMESTGSEWTLRPTPMKSIVLKRF*RK*PIHGRLL*QQYIRLVQLSHPSFLSLQRTLSMSVL*PKTKQTYSNEVHCVEEIL,KQKPKEKEKPPPVNKQENAGTLNILSTLSNGNSSKQKIPADGVHRIRVDFKTYSNEVHCVEEILKEMTHSWPPPLTAIHTPSTAEPSKFPFPTKDSQHVSSVTQNQTDLLQ*SPLC*RDS,KQKPKEKEKPPPVNKQENAGTLNILSTLSNGNSSKQKIPADGVHRIRVDFKTYSNEVHCVEEILKEMTHSWPPPLTAIHTPSTAEPSKFPFPTKDSQHVSSVTQNQTDLLQ*SPLC*RDS,NKNQKKRKNHLRSISRRMQAL*TSSALSPMAIVLSKKFQQMESTGSEWTLRPTPMKSIVLKRF*RK*PIHGRLL*QQYIRLVQLSHPSFLSLQRTLSMSVL*PKTKQTYSNEVHCVEEIL,NKNQKKRKNHLRSISRRMQAL*TSSALSPMAIVLSKKFQQMESTGSEWTLRPTPMKSIVLKRF*RK*PIHGRLL*QQYIRLVQLSHPSFLSLQRTLSMSVL*PKTKQTYSNEVHCVEEIL,,,, KMT2A:NM_001197104[1,9]-AFF1:NM_001166693[5,21];KMT2A:NM_005933[1,9]-AFF1:NM_001166693[5,21];KMT2A:NM_001197104[1,9]-AFF1:NM_001166693[5,21];KMT2A:NM_005933[1,9]-AFF1:NM_001166693[5,21];KMT2A:NM_001197104[1,9]-AFF1:NM_005935[4,20];KMT2A:NM_005933[1,9]-AFF1:NM_005935[4,20];KMT2A:NM_001197104[1,9]-AFF1:NM_005935[4,20];KMT2A:NM_005933[1,9]-AFF1:NM_005935[4,20];;;; ERROR_geneB_multiple_matching_frames=NM_001166693;ERROR_geneB_multiple_matching_frames=NM_005935 geneB_transcripts=NM_001166693,NM_005935;not_inframe_due_to_intermediate_stop_codon ,,,,,,,,,,, 0,0,1,1,0,0,1,1,,,, SJINF011_D ICE1 chr5 5470735 + intron NF1 chr17 29511483 + intron > 1 3 114 100 0.000 0.991 19 100 0.000 0.133 114 114 GGGGAATAAAACCCCATTATATTACAGGATTTCCAAATACTCACTTACAGAATTAAACATCTGGTAAACAAAAATGAGGACATAGTACAGTTCATTAATTTAAAAAGTAAATGTCGGTGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCCGGAGGCTGAGGCAGGAGAATGG CTX 100.00 HQ 2 other ,, NM_015325,NM_015325,NM_015325 ,, ,, ,, 6222,6222,6222 ,, ,, NM_000267,NM_001042492,NM_001128147 ,, ,, ,, 888,888,888 8457,8520,1782 ,, ,, ,, ;; geneB_no_inframe_contig_found geneB_transcripts=NM_000267,NM_001042492,NM_001128147 ,, ,, SJINF011_D NA chr16 53044885 - intergenic KLHL22 chr22 20855125 - intergenic > 0 8 49 162 0.694 0.000 1 316 0.000 0.538 60 57 GTCCATGGTAAAGTTTTACAGCATTACCAGGAGTGTGACAAGGGTGAGGAGTTAGGACCTTGGCCTCCCAAAGTGCTGGTATTACAGGCGTAATCCCAGCTGGGCACTGAGCCACTGTGCCCAGCCCCACTTATGCCATCTTCTGATCATAGAGCTGGACGTGGTAGTGTGTGCCTGTAGTCCAAGCTACTCAGGAGGCTGAGGCAGAAGAATCAGTTG CTX 58.70 HQ 0 other 0 NM_032775 geneB_no_transcripts SJINF011_D TAS2R42 chr12 11343027 + intergenic LINC01252 chr12 11702524 + 5utr > 11 7 160 76 0.000 0.000 518 293 0.200 0.000 160 160 CTTCTGCAAGGGGCTCTCCCGCACCCTGCTCGCCTTCTTCGAGCTGGCCTGGCAGCTGCGCATGAACTTCCCGTACTTCTACGTCGCGGGCTCGGTGATCCTCAACATCCGATTGCAGGTACCAGGGGAATCTATACCTGAAGCATTACTGGAGTCAAGACAGAGTCTTGCTCTGTCGCCCAGGCTGGAGTGATGAGGCCCGATCATCACTCCACCTGGGCTCACTGCACCTCCG DEL 51.80 HQ 0 other 0 NM_181429 geneB_no_transcripts SJINF011_D FLT3 chr13 28608253 - coding FLT3 chr13 28608313 - coding > 8 21 172 223 0.000 0.000 254 652 0.011 0.021 171 181 CTATGCAACAATTGGTGTTTGTCTCCTCTTCATTGTCGTTTTAACCCTGCTAATTTGTCACAAGTACAAAAAGCAATTTAGGTATGAAAGCCAGCTACAGATGGTACAGGTGACCGGCTCCTCAGATAATGAGTACTTCTACGTTGATTTCAGAGAATATGAATATGATCTCCCCCGCGCGACCGGCTCCTCAGATAATGAGTACTTCTACGTTGATTTCAGAGAATATGAATATGATCTCAAATGGGAGTTTCCAAGAGAAAATTTAGAGTTTGGGAAGGTACTAGGATCAGGTGCTTTTGGAAAAGTGATGAACGCAACAGCTTATGGAATTAGCAAAACAGGAGTCTCAATCCAGGTTGCCGTCAAAATGCTGAAAGAAAAAGCAGACAGCTCTGAAAGAG Internal_dup 125.16 LQ 2 ITD 1 NM_004119 581 14 perfect 1803 35 108 NM_004119 581 14 tuple 1743 2982 36 109 YATIGVCLLFIVVLTLLICHKYKKQFRYESQLQMVQVTGSSDNEYFYVDFREYEYDLPRATGSSDNEYFYVDFREYEYDLKWEFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSER FLT3:NM_004119[1,14]-FLT3:NM_004119[14,24] geneB_transcripts=NM_004119 1 SJINF011_D FLT3 chr13 28608253 - coding FLT3 chr13 28608313 - coding > 8 21 172 224 0.000 0.000 238 652 0.011 0.021 173 181 CTATGCAACAATTGGTGTTTGTCTCCTCTTCATTGTCGTTTTAACCCTGCTAATTTGTCACAAGTACAAAAAGCAATTTAGGTATGAAAGCCAGCTACAGATGGTACAGGTGACCGGCTCCTCAGATAATGAGTACTTCTACGTTGATTTCAGAGAATATGAATATGATCTCCCCCGCGCGACCGGCTCCTCAGATAATGAGTACTTCTACGTTGATTTCAGAGAATATGAATATGATCTCAAATGGGAGTTTCCAAGAGAAAATTTAGAGTTTGGGAAGGTACTAGGATCAGGTGCTTTTGGAAAAGTGATGAACGCAACAGCTTATGGAATTAGCAAAACAGGAGTCTCAATCCAGGTTGCCGTCAAAATGCTGAAAGAAAAAGCAGACAGCTCTGAAAGAG Internal_dup 124.75 LQ 2 ITD 1 NM_004119 581 14 perfect 1803 35 108 NM_004119 581 14 tuple 1743 2982 36 109 YATIGVCLLFIVVLTLLICHKYKKQFRYESQLQMVQVTGSSDNEYFYVDFREYEYDLPRATGSSDNEYFYVDFREYEYDLKWEFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSER FLT3:NM_004119[1,14]-FLT3:NM_004119[14,24] geneB_transcripts=NM_004119 1 SJINF011_D RPN2 chr20 35812777 + coding FNBP1 chr9 132757239 - coding > 2 0 84 54 0.125 0.000 70 1 0.016 0.000 97 96 CGACGCTCTTCCGATCTGCCCTTTCACAAATTTGGAATCTGCCTTCTACTCCATCGTGGGACTCAGCAGCCTTGGTGCTCAGGTGCCAGATGCAAAGGATCAGTTTGACAACTTAGAAAAACACACACAGTGGGGAATTGATATTCTTG CTX 6.10 LQ 2 Fusion 1,1 NM_001135771,NM_002951 70,70 2,2 tuple,tuple 207,207 31,31 96,96 NM_015033,NM_015033 9,9 2,2 tuple,tuple 25,25 1854,1854 32,32 97,97 DALPICPFTNLESAFYSIVGLSSLGAQVPDAKDQFDNLEKHTQWGIDIL,DALPICPFTNLESAFYSIVGLSSLGAQVPDAKDQFDNLEKHTQWGIDIL RPN2:NM_001135771[1,2]-FNBP1:NM_015033[2,17];RPN2:NM_002951[1,2]-FNBP1:NM_015033[2,17] geneB_transcripts=NM_015033 , 1,1 SJINF011_D GIT2 chr12 110370774 + 3utr DDX3X chrX 41202985 + coding > 2 0 94 51 0.000 0.519 59 0 0.011 0.000 95 96 ATTAAATGTTTCTTTTTGTAGAAATCTGAAGAGTTCTGCGTCTGAATTTGAAATTGGACTTTATAAAGCCTAGAAAACAGAGGAGGCGGTGCCCAAACAGGGTCTGGAAAAACTGCAGCATTTCTGTTGCCCATCTTGAGTCAGAT CTX 0.26 LQ 3 NLoss 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 NM_001135213,NM_001135214,NM_014776,NM_057169,NM_057170,NM_001135213,NM_001135214,NM_014776,NM_057169,NM_057170,NM_001135213,NM_001135214,NM_014776,NM_057169,NM_057170,,, ,,,,,,,,,,,,,,,,, 19,19,18,20,18,19,19,18,20,18,19,19,18,20,18,,, ,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,, NM_001193416,NM_001193416,NM_001193416,NM_001193416,NM_001193416,NM_001193417,NM_001193417,NM_001193417,NM_001193417,NM_001193417,NM_001356,NM_001356,NM_001356,NM_001356,NM_001356,NM_001193416,NM_001193417,NM_001356 227,227,227,227,227,211,211,211,211,211,227,227,227,227,227,227,211,227 8,8,8,8,8,7,7,7,7,7,8,8,8,8,8,,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 680,680,680,680,680,632,632,632,632,632,680,680,680,680,680,680,632,680 1986,1986,1986,1986,1986,1941,1941,1941,1941,1941,1989,1989,1989,1989,1989,1986,1941,1989 33,33,33,33,33,33,33,33,33,33,33,33,33,33,33,,, ,,,,,,,,,,,,,,,,, IKCFFL*KSEEFCV*I*NWTL*SLENRGGGAQTGSGKTAAFLLPILSQ,IKCFFL*KSEEFCV*I*NWTL*SLENRGGGAQTGSGKTAAFLLPILSQ,IKCFFL*KSEEFCV*I*NWTL*SLENRGGGAQTGSGKTAAFLLPILSQ,IKCFFL*KSEEFCV*I*NWTL*SLENRGGGAQTGSGKTAAFLLPILSQ,IKCFFL*KSEEFCV*I*NWTL*SLENRGGGAQTGSGKTAAFLLPILSQ,IKCFFL*KSEEFCV*I*NWTL*SLENRGGGAQTGSGKTAAFLLPILSQ,IKCFFL*KSEEFCV*I*NWTL*SLENRGGGAQTGSGKTAAFLLPILSQ,IKCFFL*KSEEFCV*I*NWTL*SLENRGGGAQTGSGKTAAFLLPILSQ,IKCFFL*KSEEFCV*I*NWTL*SLENRGGGAQTGSGKTAAFLLPILSQ,IKCFFL*KSEEFCV*I*NWTL*SLENRGGGAQTGSGKTAAFLLPILSQ,IKCFFL*KSEEFCV*I*NWTL*SLENRGGGAQTGSGKTAAFLLPILSQ,IKCFFL*KSEEFCV*I*NWTL*SLENRGGGAQTGSGKTAAFLLPILSQ,IKCFFL*KSEEFCV*I*NWTL*SLENRGGGAQTGSGKTAAFLLPILSQ,IKCFFL*KSEEFCV*I*NWTL*SLENRGGGAQTGSGKTAAFLLPILSQ,IKCFFL*KSEEFCV*I*NWTL*SLENRGGGAQTGSGKTAAFLLPILSQ,,, GIT2:NM_001135213[1,19]-DDX3X:NM_001193416[8,17];GIT2:NM_001135214[1,19]-DDX3X:NM_001193416[8,17];GIT2:NM_014776[1,18]-DDX3X:NM_001193416[8,17];GIT2:NM_057169[1,20]-DDX3X:NM_001193416[8,17];GIT2:NM_057170[1,18]-DDX3X:NM_001193416[8,17];GIT2:NM_001135213[1,19]-DDX3X:NM_001193417[7,16];GIT2:NM_001135214[1,19]-DDX3X:NM_001193417[7,16];GIT2:NM_014776[1,18]-DDX3X:NM_001193417[7,16];GIT2:NM_057169[1,20]-DDX3X:NM_001193417[7,16];GIT2:NM_057170[1,18]-DDX3X:NM_001193417[7,16];GIT2:NM_001135213[1,19]-DDX3X:NM_001356[8,17];GIT2:NM_001135214[1,19]-DDX3X:NM_001356[8,17];GIT2:NM_014776[1,18]-DDX3X:NM_001356[8,17];GIT2:NM_057169[1,20]-DDX3X:NM_001356[8,17];GIT2:NM_057170[1,18]-DDX3X:NM_001356[8,17];;; geneB_transcripts=NM_001193416,NM_001193417,NM_001356 ,,,,,,,,,,,,,,,,, 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,,, SJINF011_D AKAP13 chr15 86288702 + 3utr LAPTM5 chr1 31208613 + intron > 2 0 88 43 0.083 0.000 58 1 0.007 0.000 89 91 CCACCTCGATCTCGGTGTTTCAGGCACTAAAGCAACAAAACAACCCATAGTATCTCATTCTGTCATCAGATCCAGAAGAAATATCCTGGCGGCAGAAGCTTTCCAGAGTGGGGCATACAATCCCAAGGGGCAA CTX 0.00 LQ 3 other ,, NM_001270546,NM_006738,NM_007200 ,, ,, ,, ,, ,, ,, NM_006762,NM_006762,NM_006762 ,, ,, ,, ,, ,, ,, ,, ,, ;; geneB_no_inframe_contig_found geneB_transcripts=NM_006762;geneB_transcript_strand_disagree=NM_006762 ,, ,, SJINF011_D OSBPL8 chr12 76762994 - coding SS18 chr18 23637707 - coding > 2 0 88 35 0.000 0.000 42 0 0.013 0.021 92 91 AGATACCCGACCATGGGACCCACTTAATGATATGATACAGTTTGAAAAAGATGGTGTTATTCAGACCAAAGTGAAACATCGTACTCCAATGCCACCCACACAGAATATGCCTATGGGTCCTGGAG CTX 0.00 LQ 2 Fusion 1,1,1,1 NM_001003712,NM_020841,NM_001003712,NM_020841 735,777,735,777 20,21,20,21 perfect,perfect,perfect,perfect 2202,2328,2202,2328 29,29,29,29 90,90,90,90 NM_001007559,NM_001007559,NM_005637,NM_005637 78,78,78,78 4,4,4,4 tuple,tuple,tuple,tuple 232,232,232,232 1257,1257,1164,1164 30,30,30,30 91,91,91,91 DTRPWDPLNDMIQFEKDGVIQTKVKHRTPMPPTQNMPMGPG,DTRPWDPLNDMIQFEKDGVIQTKVKHRTPMPPTQNMPMGPG,DTRPWDPLNDMIQFEKDGVIQTKVKHRTPMPPTQNMPMGPG,DTRPWDPLNDMIQFEKDGVIQTKVKHRTPMPPTQNMPMGPG OSBPL8:NM_001003712[1,20]-SS18:NM_001007559[4,11];OSBPL8:NM_020841[1,21]-SS18:NM_001007559[4,11];OSBPL8:NM_001003712[1,20]-SS18:NM_005637[4,10];OSBPL8:NM_020841[1,21]-SS18:NM_005637[4,10] geneB_transcripts=NM_001007559,NM_005637 ,,, 1,1,1,1 SJINF011_D KMT2C chr7 152132710 - coding RNF130 chr5 179397506 - coding > 2 0 72 36 0.486 0.000 62 0 0.000 0.005 73 72 GCCGCAGACAAAAGACCTCGGGGCCGGCCTCGCAAAGATGGCGCTTCCCCTTTCCAGAGAGCCAGAAAGAAGCATGTTTTCCACAAATCCTGCGTGGATCCCTGGCT CTX 0.00 LQ 2 Fusion 1,1 NM_170606,NM_170606 54,54 1,1 perfect,perfect 161,161 22,22 68,68 NM_001280801,NM_018434 283,283 6,6 tuple,tuple 849,849 1155,1260 23,23 69,69 AADKRPRGRPRKDGASPFQRARKKHVFHKSCVDPW,AADKRPRGRPRKDGASPFQRARKKHVFHKSCVDPW KMT2C:NM_170606[1,1]-RNF130:NM_001280801[6,8];KMT2C:NM_170606[1,1]-RNF130:NM_018434[6,9] geneB_transcripts=NM_001280801,NM_018434 , 0,0 SJINF011_D LOC100129361 chr12 11324151 + coding TAS2R42 chr12 11342986 + intergenic > 38 40 186 117 0.000 0.000 1095 1918 0.000 0.115 186 186 CGGCGGCTCCGTCCTCCTTGGCCGTCAGGGCCTCAAGCCCCGCCGCGACACCCACCTCGTACGGCGTCTTCTGCAAGGGGCTCTCCCGCACCCTGCTCGCCTTCTTCGAGCTGGCCTGGCAGCTGCGCATGAACTTCCCGTACTTCTACGTCGCGGGCTCGGTGATCCTCAACATCCGATTGCAGGTACCAGGGGAATCTATACCTGAAGCATTACTGGAGTCAAGACAGAGTCTTGCTCTGTCGCCCAGGCTGGAGTGATGAGGCCCGATCATCACTCCACCTGGGCTCACTGCACCTCCG read_through 191.80 RT 0 CLoss 0,0,0 NM_001271592,NM_001291314,NM_001291315 ,, ,, ,, 196,, ,, ,, NM_181429,NM_181429,NM_181429 ,, ,, ,, ,, ,, ,, ,, ,, ;; geneB_no_transcripts ,, ,, SJINF011_D LOC100129361 chr12 11324151 + coding TAS2R42 chr12 11342986 + intergenic > 38 40 49 78 0.000 0.000 455 534 0.000 0.115 49 49 CCGTACTTCTACGTCGCGGGCTCGGTGATCCTCAACATCCGATTGCAGGTAGCAGGGGAATCTATACCTGAAGCATTACTGGAGTCAAGCATGGGCTTCCTCACGACATGTGGACAGGTTCCTGAG read_through 32.39 RT 0 CLoss 0,0,0 NM_001271592,NM_001291314,NM_001291315 ,, ,, ,, 196,, ,, ,, NM_181429,NM_181429,NM_181429 ,, ,, ,, ,, ,, ,, ,, ,, ;; geneB_no_transcripts ,, ,, SJINF011_D LOC101927190 chr5 115735179 - intergenic COMMD10 chr5 115639381 - intergenic ? 16 15 136 241 0.000 0.000 1078 598 0.000 0.200 136 136 GAATGAGAAGAGGAGCTTCCAAAAAGGGAGCTGAAGAAGATGATCAGAGAGGTGGTGTGAGAGGCACCCATACAGAACAGGTGTTTTCCTCGCCTCTGCAAACTCCATCTTGTCCATTACCCTGAATGGAGTGTCAAGTAGAAAATCCCAGGGTTCTGTCTTGGAATCTTGAGCACTGCTCTCTGAGATCTGGAGTCTCTCTCTGTGTGAAGGTTAAGCTCCTGATGGTCTCTGCCTGTCCTGGGACTGCTGTTGATTCATGCAGGGAGAGAGCCGAGAACAAGCTGTGGCTCTTAAGCATTAGCATTCTTGTCTGCTCAAAGCTGACTCAGCTCCAAATCTGGGTTTCAATCACAGAAAGAGGAAGACAACTGGA read_through 29.90 RT 0 other unhandled orientation ? SJINF011_D NA chr10 54332746 - intergenic NA chr10 54320876 - intergenic ? 7 7 68 68 0.000 0.000 367 336 0.000 0.173 68 68 CTGCAACCTCTACCTCCTGGGTTCAAGCGATTCCCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGTTGAATGTACAGCTGGTATAAAAATGGTGCTTTGTCGTCATGAAGAAGGTGTATTCTGGGATCAAA read_through 16.80 RT 0 other unhandled orientation ? SJBALL020704_D1 EBF1 chr5 158139980 - coding PDGFRB chr5 149506178 - coding > 17 15 160 185 0.006 0.000 697 575 0.060 0.376 160 160 AGCGGCCGACATTGCCGAGGCCCTGTACAGTGTTCCCCGCAACCACAACCAACTCCCGGCCCTTGCTAACACCTCGGTCCACGCAGGGATGATGGGCGTGAATTCGTTCAGTGGACAACTGGCCGTGAATGTCTCCGAGGCATCACAAGCCACCAATCAGGCCTTGCCCTTTAAGGTGGTGGTGATCTCAGCCATCCTGGCCCTGGTGGTGCTCACCATCATCTCCCTTATCATCCTCATCATGCTTTGGCAGAAGAAGCCACGTTACGAGATCCGATGGAAGGTGATTGAGTCTGTGAGCTCTGACGGCCATGAGTACATCTACGTGGACCCCATGCAGCTGCC DEL 1746.17 HQ 4 Fusion 1,1,1 NM_001290360,NM_024007,NM_182708 458,457,426 13,13,12 tuple,tuple,tuple 1370,1367,1274 52,52,52 159,159,159 NM_002609,NM_002609,NM_002609 527,527,527 11,11,11 blat,blat,blat 1580,1580,1580 3321,3321,3321 54,54,54 163,163,163 AADIAEALYSVPRNHNQLPALANTSVHAGMMGVNSFSGQLAVNVSEASQATNQALPFKVVVISAILALVVLTIISLIILIMLWQKKPRYEIRWKVIESVSSDGHEYIYVDPMQL,AADIAEALYSVPRNHNQLPALANTSVHAGMMGVNSFSGQLAVNVSEASQATNQALPFKVVVISAILALVVLTIISLIILIMLWQKKPRYEIRWKVIESVSSDGHEYIYVDPMQL,AADIAEALYSVPRNHNQLPALANTSVHAGMMGVNSFSGQLAVNVSEASQATNQALPFKVVVISAILALVVLTIISLIILIMLWQKKPRYEIRWKVIESVSSDGHEYIYVDPMQL EBF1:NM_001290360[1,13]-PDGFRB:NM_002609[11,23];EBF1:NM_024007[1,13]-PDGFRB:NM_002609[11,23];EBF1:NM_182708[1,12]-PDGFRB:NM_002609[11,23] geneB_transcripts=NM_002609 A,A,A 1,1,1 SJBALL020704_D1 SH3GL1 chr19 4400321 - coding ZBTB7A chr19 4055246 - 5utr > 7 10 72 75 0.000 0.000 354 379 0.051 0.107 72 72 GCGGGAGGCTCGGCGGCGGGCGGCAGCATGTCGGTGGCGGGGCTGAAGAAGCAGTTCTACAAGGCGAGCCAGGTCTCGGCGCGGAAGATGGCCGGCGGCGTGGACGGCCCCATCGGGATCCCGTTCCCCGACCACAGCAGCGACAT DEL 1024.45 HQ 1 Fusion 1,1,1 NM_001199943,NM_001199944,NM_003025 16,16,16 1,1,1 tuple,tuple,tuple 45,45,45 23,23,23 71,71,71 NM_015898,NM_015898,NM_015898 -4,-4,-4 2,2,2 tuple,tuple,tuple ,, 1755,1755,1755 27,27,27 81,81,81 AGGSAAGGSMSVAGLKKQFYKASQVSARKMAGGVDGPIGIPFPDHSSD,AGGSAAGGSMSVAGLKKQFYKASQVSARKMAGGVDGPIGIPFPDHSSD,AGGSAAGGSMSVAGLKKQFYKASQVSARKMAGGVDGPIGIPFPDHSSD SH3GL1:NM_001199943[1,1]-ZBTB7A:NM_015898[2,3];SH3GL1:NM_001199944[1,1]-ZBTB7A:NM_015898[2,3];SH3GL1:NM_003025[1,1]-ZBTB7A:NM_015898[2,3] geneB_transcripts=NM_015898;geneb_utr_codons=5 VSA,VSA,VSA 0,0,0 SJBALL020704_D1 ARID4B chr1 235392546 - coding B3GALNT2 chr1 235658138 - coding > 26 29 317 236 0.000 0.000 870 904 0.021 0.261 317 317 AAAAGGTGGTTTGTCCTGATTGTAGTGATGAGATTGCTGTAAAAAAGGACAATATTCTTGTTCGATCTTTCAAAGATGGAAAATTTACTTCAGTTCCAAGAAAAGATGTCCATGAAATTACTAGTGACACTGCACCAAAGCCTGATGCTGTTTTAAAGCAAGCCTTTGAACAGGCACTTGAATTTCACAAAAGTAGAACTATTCCTGCTAACTGGAAGACTGAATTGAAAGAAGATAGCTCTAGCAGTGAAGCAGAGGAAGAAGAGGAGGAGGAAGATGATGAAAAAGAAAAGGAGGATAATAGCAGTGAAGAAGAAATCAGTTGGCCTTATTTCCTCAGTGGAAATCTACTCACTATGATGTGGTAGTTGGCGTGTTGTCAGCTCGCAATAACCATGAACTTCGAAACGTGATAAGAAGCACCTGGATGAGACATTTGCTACAGCATCCCACATTAAGTCAACGTAAAAGCTCTGAAATGGGCATGAGGAAACGTGCATGTGCGAGGTGAAGATCAGTAACTGATGTTAATGCCAACACATCTCTCAGTGTG INS 980.59 HQ 0 Fusion 0,0,0,0,0,0,3,3 NM_001206794,NM_016374,NM_031371,NM_001206794,NM_016374,NM_031371,, ,,,,,,, 11,11,11,11,11,11,, ,,,,,,, 897,897,897,897,897,897,, ,,,,,,, ,,,,,,, NM_001277155,NM_001277155,NM_001277155,NM_152490,NM_152490,NM_152490,NM_001277155,NM_152490 79,79,79,38,38,38,79,38 3,3,3,2,2,2,, blat,blat,blat,blat,blat,blat,blat,blat 236,236,236,113,113,113,236,113 981,981,981,1503,1503,1503,981,1503 105,105,105,105,105,105,, ,,,,,,, KGGLS*L***DCCKKGQYSCSIFQRWKIYFSSKKRCP*NY**HCTKA*CCFKASL*TGT*ISQK*NYSC*LED*IERR*L*Q*SRGRRGGGR**KRKGG**Q*RRNQLALFPQWKSTHYDVVVGVLSARNNHELRNVIRSTWMRHLLQHPTLSQRKSSEMGMRKRACAR*RSVTDVNANTSLSV,KGGLS*L***DCCKKGQYSCSIFQRWKIYFSSKKRCP*NY**HCTKA*CCFKASL*TGT*ISQK*NYSC*LED*IERR*L*Q*SRGRRGGGR**KRKGG**Q*RRNQLALFPQWKSTHYDVVVGVLSARNNHELRNVIRSTWMRHLLQHPTLSQRKSSEMGMRKRACAR*RSVTDVNANTSLSV,KGGLS*L***DCCKKGQYSCSIFQRWKIYFSSKKRCP*NY**HCTKA*CCFKASL*TGT*ISQK*NYSC*LED*IERR*L*Q*SRGRRGGGR**KRKGG**Q*RRNQLALFPQWKSTHYDVVVGVLSARNNHELRNVIRSTWMRHLLQHPTLSQRKSSEMGMRKRACAR*RSVTDVNANTSLSV,KGGLS*L***DCCKKGQYSCSIFQRWKIYFSSKKRCP*NY**HCTKA*CCFKASL*TGT*ISQK*NYSC*LED*IERR*L*Q*SRGRRGGGR**KRKGG**Q*RRNQLALFPQWKSTHYDVVVGVLSARNNHELRNVIRSTWMRHLLQHPTLSQRKSSEMGMRKRACAR*RSVTDVNANTSLSV,KGGLS*L***DCCKKGQYSCSIFQRWKIYFSSKKRCP*NY**HCTKA*CCFKASL*TGT*ISQK*NYSC*LED*IERR*L*Q*SRGRRGGGR**KRKGG**Q*RRNQLALFPQWKSTHYDVVVGVLSARNNHELRNVIRSTWMRHLLQHPTLSQRKSSEMGMRKRACAR*RSVTDVNANTSLSV,KGGLS*L***DCCKKGQYSCSIFQRWKIYFSSKKRCP*NY**HCTKA*CCFKASL*TGT*ISQK*NYSC*LED*IERR*L*Q*SRGRRGGGR**KRKGG**Q*RRNQLALFPQWKSTHYDVVVGVLSARNNHELRNVIRSTWMRHLLQHPTLSQRKSSEMGMRKRACAR*RSVTDVNANTSLSV,, ARID4B:NM_001206794[1,11]-B3GALNT2:NM_001277155[3,8];ARID4B:NM_016374[1,11]-B3GALNT2:NM_001277155[3,8];ARID4B:NM_031371[1,11]-B3GALNT2:NM_001277155[3,8];ARID4B:NM_001206794[1,11]-B3GALNT2:NM_152490[2,12];ARID4B:NM_016374[1,11]-B3GALNT2:NM_152490[2,12];ARID4B:NM_031371[1,11]-B3GALNT2:NM_152490[2,12];; geneB_transcripts=NM_001277155,NM_152490 ,,,,,,, 1,1,1,1,1,1,, SJBALL020704_D1 NA chr16 85589969 + intergenic KLHL36 chr16 84684458 + 5utr > 6 4 71 250 0.027 0.004 313 112 0.373 0.312 72 72 CCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAGGGCTGAAATCTCTTTAATGATGGAGGGAAGCAGGCAGACGCGAGTGTCTCGGCCATACAAGATCAGCGAATCATCAAAGGTATACCGCTGGGCCGACCACTCAAGCACGGTGCTGCAGCGGCTGAACGAGCAGCGTCTCCGCGGGCTCTTCTGCGACGTCGTCCTGGTGGCCGATGAGCAGCGTGTGCCAGCCCATCGCAACCTGCTGGCCGTGTGCAGCGACTACTTCAACTCCATGTTCACCACGGCCTTGAGCCCAAT INS 841.37 HQ 0 upTSS 2 NM_024731 -5 tuple 1851 geneA_no_transcript_IDs_found geneB_transcripts=NM_024731;geneb_utr_codons=6 SJBALL020704_D1 SH3TC1 chr4 8201132 + 5utr TBC1D14 chr4 6925101 + 5utr > 4 5 134 88 0.000 0.022 129 161 0.122 0.153 135 135 GCGGCCCCTGCCTGCTCCGTCCAGCTGGAGACAGCCCCGTGGGGCCAGCCAGCGCTGGGCCAGGAGCGGCCACCTGGTTCCTGCGTGCTACGGCCCTGTGGGCCTGGGAGCTGCCTCTGAGGAACACGCCGCAGTTTCTCCTTGGACCAAGATGACTGATGGAAAACTCTCCACCTCTACAAATGGCGTAGCCTTCATGGGTATTCTGGATGGTCGACCAGG INS 574.27 HQ 0 upTSS 0,0,2,2 NM_018986,NM_018986,, ,,, 1,1,, ,,, ,,, ,,, ,,, NM_001113361,NM_020773,NM_001113361,NM_020773 -5,-5,-5,-5 2,2,, tuple,tuple,tuple,tuple ,,, 2082,2082,2082,2082 47,47,, ,,, RPLPAPSSWRQPRGASQRWARSGHLVPACYGPVGLGAASEEHAAVSPWTKMTDGKLSTSTNGVAFMGILDGRP,RPLPAPSSWRQPRGASQRWARSGHLVPACYGPVGLGAASEEHAAVSPWTKMTDGKLSTSTNGVAFMGILDGRP,, SH3TC1:NM_018986[1,1]-TBC1D14:NM_001113361[2,14];SH3TC1:NM_018986[1,1]-TBC1D14:NM_020773[2,14];; geneB_transcripts=NM_001113361,NM_020773;geneb_utr_codons=6 ,,, 1,1,, SJBALL020704_D1 WNT9A chr1 228135494 - coding ARF1 chr1 228284778 + 5utr > 23 4 149 68 0.013 0.000 230 87 0.300 0.026 150 155 GGCCGCGGCCAGCCGGCGCGGAGCTGGGAGCGCGATGGTCGGCCGCCGAGGCGCGGCAAGATGCTGGATGGGTCCCCGCTGGCGCGCTGGCTGGCCGCGGCCTTCGGGCTGACGCTGCTGCTCGCCGCGCTGCGCCCTTCGGCCGCCTACTTCGGGTGTCCCTGGCCAGTGTCCTTCCACCTGTCCACAAGCATGGGGAACATCTTCGCCAACCTCTTCAAG ITX 484.95 HQ 0 Fusion 1,1,1,1 NM_003395,NM_003395,NM_003395,NM_003395 33,33,33,33 1,1,1,1 tuple,tuple,tuple,tuple 95,95,95,95 51,51,51,51 155,155,155,155 NM_001024226,NM_001024227,NM_001024228,NM_001658 -12,-12,-12,-12 2,2,2,2 tuple,tuple,tuple,tuple ,,, 546,546,546,546 54,54,54,54 162,162,162,162 GRGQPARSWERDGRPPRRGKMLDGSPLARWLAAAFGLTLLLAALRPSAAYFGCPWPVSFHLSTSMGNIFANLFK,GRGQPARSWERDGRPPRRGKMLDGSPLARWLAAAFGLTLLLAALRPSAAYFGCPWPVSFHLSTSMGNIFANLFK,GRGQPARSWERDGRPPRRGKMLDGSPLARWLAAAFGLTLLLAALRPSAAYFGCPWPVSFHLSTSMGNIFANLFK,GRGQPARSWERDGRPPRRGKMLDGSPLARWLAAAFGLTLLLAALRPSAAYFGCPWPVSFHLSTSMGNIFANLFK WNT9A:NM_003395[1,1]-ARF1:NM_001024226[2,5];WNT9A:NM_003395[1,1]-ARF1:NM_001024227[2,5];WNT9A:NM_003395[1,1]-ARF1:NM_001024228[2,5];WNT9A:NM_003395[1,1]-ARF1:NM_001658[2,5] geneB_transcripts=NM_001024226,NM_001024227,NM_001024228,NM_001658;geneb_utr_codons=13;reannotated geneB from ARF1,MIR3620 to ARF1 CP,CP,CP,CP 0,0,0,0 SJBALL020704_D1 CAMKK2 chr12 121682942 - coding BCL7A chr12 122468606 + coding > 1 4 178 39 0.000 0.093 39 209 0.051 0.112 179 179 GAGAACTGCACGCTGGTCGAAGTGACTGAAGAGGAGGTCGAGAACTCAGTCAAACACATTCCCAGCTTGGCAACCGTGACCCTGGTGAAGACCATGATACGTAAACGCTCCTTTGGGAACCCATTCGAGGGCAGCCGGCGGGAGGAACGCTCACTGTCAGCGCCTGGAAACTTGCTCACGGAGAAGAAATGGGTGACCGTTGGTGACACATCCCTACG ITX 418.11 HQ 2 Fusion 1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1 NM_001270485,NM_001270486,NM_006549,NM_153499,NM_153500,NM_172214,NM_172215,NM_172216,NM_172226,NM_001270485,NM_001270486,NM_006549,NM_153499,NM_153500,NM_172214,NM_172215,NM_172216,NM_172226 519,519,519,519,476,519,476,476,519,519,519,519,519,476,519,476,476,519 15,14,15,15,14,15,14,14,15,15,14,15,15,14,15,14,14,15 tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 1553,1553,1553,1553,1424,1553,1424,1424,1553,1553,1553,1553,1553,1424,1553,1424,1424,1553 59,59,59,59,59,59,59,59,59,59,59,59,59,59,59,59,59,59 179,179,179,179,179,179,179,179,179,179,179,179,179,179,179,179,179,179 NM_001024808,NM_001024808,NM_001024808,NM_001024808,NM_001024808,NM_001024808,NM_001024808,NM_001024808,NM_001024808,NM_020993,NM_020993,NM_020993,NM_020993,NM_020993,NM_020993,NM_020993,NM_020993,NM_020993 31,31,31,31,31,31,31,31,31,31,31,31,31,31,31,31,31,31 2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2 blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat 93,93,93,93,93,93,93,93,93,93,93,93,93,93,93,93,93,93 633,633,633,633,633,633,633,633,633,696,696,696,696,696,696,696,696,696 60,60,60,60,60,60,60,60,60,60,60,60,60,60,60,60,60,60 180,180,180,180,180,180,180,180,180,180,180,180,180,180,180,180,180,180 ENCTLVEVTEEEVENSVKHIPSLATVTLVKTMIRKRSFGNPFEGSRREERSLSAPGNLLTEKKWVTVGDTSL,ENCTLVEVTEEEVENSVKHIPSLATVTLVKTMIRKRSFGNPFEGSRREERSLSAPGNLLTEKKWVTVGDTSL,ENCTLVEVTEEEVENSVKHIPSLATVTLVKTMIRKRSFGNPFEGSRREERSLSAPGNLLTEKKWVTVGDTSL,ENCTLVEVTEEEVENSVKHIPSLATVTLVKTMIRKRSFGNPFEGSRREERSLSAPGNLLTEKKWVTVGDTSL,ENCTLVEVTEEEVENSVKHIPSLATVTLVKTMIRKRSFGNPFEGSRREERSLSAPGNLLTEKKWVTVGDTSL,ENCTLVEVTEEEVENSVKHIPSLATVTLVKTMIRKRSFGNPFEGSRREERSLSAPGNLLTEKKWVTVGDTSL,ENCTLVEVTEEEVENSVKHIPSLATVTLVKTMIRKRSFGNPFEGSRREERSLSAPGNLLTEKKWVTVGDTSL,ENCTLVEVTEEEVENSVKHIPSLATVTLVKTMIRKRSFGNPFEGSRREERSLSAPGNLLTEKKWVTVGDTSL,ENCTLVEVTEEEVENSVKHIPSLATVTLVKTMIRKRSFGNPFEGSRREERSLSAPGNLLTEKKWVTVGDTSL,ENCTLVEVTEEEVENSVKHIPSLATVTLVKTMIRKRSFGNPFEGSRREERSLSAPGNLLTEKKWVTVGDTSL,ENCTLVEVTEEEVENSVKHIPSLATVTLVKTMIRKRSFGNPFEGSRREERSLSAPGNLLTEKKWVTVGDTSL,ENCTLVEVTEEEVENSVKHIPSLATVTLVKTMIRKRSFGNPFEGSRREERSLSAPGNLLTEKKWVTVGDTSL,ENCTLVEVTEEEVENSVKHIPSLATVTLVKTMIRKRSFGNPFEGSRREERSLSAPGNLLTEKKWVTVGDTSL,ENCTLVEVTEEEVENSVKHIPSLATVTLVKTMIRKRSFGNPFEGSRREERSLSAPGNLLTEKKWVTVGDTSL,ENCTLVEVTEEEVENSVKHIPSLATVTLVKTMIRKRSFGNPFEGSRREERSLSAPGNLLTEKKWVTVGDTSL,ENCTLVEVTEEEVENSVKHIPSLATVTLVKTMIRKRSFGNPFEGSRREERSLSAPGNLLTEKKWVTVGDTSL,ENCTLVEVTEEEVENSVKHIPSLATVTLVKTMIRKRSFGNPFEGSRREERSLSAPGNLLTEKKWVTVGDTSL,ENCTLVEVTEEEVENSVKHIPSLATVTLVKTMIRKRSFGNPFEGSRREERSLSAPGNLLTEKKWVTVGDTSL CAMKK2:NM_001270485[1,15]-BCL7A:NM_001024808[2,6];CAMKK2:NM_001270486[1,14]-BCL7A:NM_001024808[2,6];CAMKK2:NM_006549[1,15]-BCL7A:NM_001024808[2,6];CAMKK2:NM_153499[1,15]-BCL7A:NM_001024808[2,6];CAMKK2:NM_153500[1,14]-BCL7A:NM_001024808[2,6];CAMKK2:NM_172214[1,15]-BCL7A:NM_001024808[2,6];CAMKK2:NM_172215[1,14]-BCL7A:NM_001024808[2,6];CAMKK2:NM_172216[1,14]-BCL7A:NM_001024808[2,6];CAMKK2:NM_172226[1,15]-BCL7A:NM_001024808[2,6];CAMKK2:NM_001270485[1,15]-BCL7A:NM_020993[2,6];CAMKK2:NM_001270486[1,14]-BCL7A:NM_020993[2,6];CAMKK2:NM_006549[1,15]-BCL7A:NM_020993[2,6];CAMKK2:NM_153499[1,15]-BCL7A:NM_020993[2,6];CAMKK2:NM_153500[1,14]-BCL7A:NM_020993[2,6];CAMKK2:NM_172214[1,15]-BCL7A:NM_020993[2,6];CAMKK2:NM_172215[1,14]-BCL7A:NM_020993[2,6];CAMKK2:NM_172216[1,14]-BCL7A:NM_020993[2,6];CAMKK2:NM_172226[1,15]-BCL7A:NM_020993[2,6] geneB_transcripts=NM_001024808,NM_020993 ,,,,,,,,,,,,,,,,, 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 SJBALL020704_D1 CBFA2T3 chr16 89043066 - coding SLC7A5 chr16 87874762 - coding > 1 12 60 84 0.032 0.045 59 180 0.208 0.073 60 60 GCGGCCTCCTGGCATCTGCCGGCTGCTCCGCACCCCGGGGTCCCAGGAAGGGCGGCCCAGGTGATGTGTCCAATCTAGATCCCAACTTCTCATTTGAAGGCACCAAACTGGATGTGGGGAACATTGTGCTGGCATTATACAGCG DEL 287.54 HQ 1 Fusion 1 NM_005187 51 1 perfect 150 18 58 NM_003486 222 3 tuple 665 1524 19 59 GLLASAGCSAPRGPRKGGPGDVSNLDPNFSFEGTKLDVGNIVLALYS CBFA2T3:NM_005187[1,1]-SLC7A5:NM_003486[3,10] geneB_transcripts=NM_003486;reannotated geneB from SLC7A5,MIR6775 to SLC7A5 2 SJBALL020704_D1 MAD1L1 chr7 1937836 - coding FTSJ2 chr7 2279312 - coding > 3 1 66 79 0.000 0.037 118 21 0.346 0.142 67 67 ACGGAGAACCAGTACCGGCTGACCTCGCTGTACGCCGAGCACCCAGGCGACTGCCTCATCTTCAAGCGTCAAGGGTTCCACACTGTTGGGAGTCGCTGCAAGAATCGGACAGGCGCTGAGCACCTGTGGCTGACCCGACATCTCAG INS 269.37 HQ 0 Fusion 1,1,1 NM_001013836,NM_001013837,NM_003550 665,665,665 18,18,18 perfect,perfect,perfect 1998,1998,1998 19,19,19 59,59,59 NM_013393,NM_013393,NM_013393 13,13,13 2,2,2 blat,blat,blat 39,39,39 741,741,741 20,20,20 60,60,60 TENQYRLTSLYAEHPGDCLIFKRQGFHTVGSRCKNRTGAEHLWLTRHL,TENQYRLTSLYAEHPGDCLIFKRQGFHTVGSRCKNRTGAEHLWLTRHL,TENQYRLTSLYAEHPGDCLIFKRQGFHTVGSRCKNRTGAEHLWLTRHL MAD1L1:NM_001013836[1,18]-FTSJ2:NM_013393[2,3];MAD1L1:NM_001013837[1,18]-FTSJ2:NM_013393[2,3];MAD1L1:NM_003550[1,18]-FTSJ2:NM_013393[2,3] geneB_transcripts=NM_013393 ,, 0,0,0 SJBALL020704_D1 PPP1R37 chr19 45596785 + coding PPP6R1 chr19 55758476 - coding > 3 3 322 86 0.000 0.000 120 80 0.136 0.025 323 324 CGGAGGCGGCGCCTGAAGCGGCGGCGGAGCCCATGCCCCGGGACGGCGGGCGGACCCGGAGAGACAAATCCGGGGCCCGGGGCATGTCCCCGGGGCCCCCGTGAGGAGGCGGCGGCGGCTATGGAGATCGCGCCGCAGGAGGCGCCGCCCGTGCCGGGCGCGGACGGCGACATTGAAGAGGCCCCAGCTGAGGCCGGGTCTCCCAGCCCCGCGTCGCCCCCCGCCGATGGGCGCCTCAAGGCTGCAGCCAAGCGCGTCACATTCCCGTCCGACGAGGATATCGTGTCTGGAGCAGTGGAGCCCAAAGACCCCTGGAGACATGAGCGCCATGTTTTGGAAGTTTGACCTGCACACAAGCTCGCACCTGGACACGCTGCTGGAGCGGGAGGACCTGAGCCTGCCCGAGCTG ITX 261.49 HQ 0 upTSS 0,2 NM_019121, , 1, , 202, , , NM_014931,NM_014931 -1,-1 2, tuple,tuple , 2646,2646 109, , GGGA*SGGGAHAPGRRADPERQIRGPGHVPGAPVRRRRRLWRSRRRRRRPCRARTATLKRPQLRPGLPAPRRPPPMGASRLQPSASHSRPTRISCLEQWSPKTPGDMSAMFWKFDLHTSSHLDTLLEREDLSLPEL, PPP1R37:NM_019121[1,1]-PPP6R1:NM_014931[2,24]; geneB_transcripts=NM_014931;geneb_utr_codons=2;reannotated geneB from PPP6R1,MIR6804,MIR6802,MIR6803 to PPP6R1 , 1, SJBALL020704_D1 BSG chr19 572702 + coding ZBTB7A chr19 4055243 - 5utr > 1 3 125 68 0.000 0.000 41 126 0.019 0.107 125 127 GCCGCGGGCGGCGGCGGCAGCGGTTGGAGGTTGTAGGACCGGCGAGGAATAGGAATCATGGCGGCTGCGCTGTTCGTGCTGCTGGGATTCGCGCTGCTGGGCACCCACGGAGCCTCCGGGGCTGGCCTCGGCCCGGAAGATGGCCGGCGGCGTGGACGGCCCCATCGGGATCCCGTTCCCCGACCACAGCAGCGA ITX 258.21 HQ 0 upTSS 0,0,0,0,2 NM_001728,NM_198589,NM_198590,NM_198591, ,,,, 1,1,1,1, ,,,, 67,67,,, ,,,, ,,,, NM_015898,NM_015898,NM_015898,NM_015898,NM_015898 -4,-4,-4,-4,-4 2,2,2,2, tuple,tuple,tuple,tuple,tuple ,,,, 1755,1755,1755,1755,1755 44,44,44,44, ,,,, PRAAAAAVGGCRTGEE*ESWRLRCSCCWDSRCWAPTEPPGLASARKMAGGVDGPIGIPFPDHSS,PRAAAAAVGGCRTGEE*ESWRLRCSCCWDSRCWAPTEPPGLASARKMAGGVDGPIGIPFPDHSS,PRAAAAAVGGCRTGEE*ESWRLRCSCCWDSRCWAPTEPPGLASARKMAGGVDGPIGIPFPDHSS,PRAAAAAVGGCRTGEE*ESWRLRCSCCWDSRCWAPTEPPGLASARKMAGGVDGPIGIPFPDHSS, BSG:NM_001728[1,1]-ZBTB7A:NM_015898[2,3];BSG:NM_198589[1,1]-ZBTB7A:NM_015898[2,3];BSG:NM_198590[1,1]-ZBTB7A:NM_015898[2,3];BSG:NM_198591[1,1]-ZBTB7A:NM_015898[2,3]; geneB_transcripts=NM_015898;geneb_utr_codons=5 ,,,, 1,1,1,1, SJBALL020704_D1 CD81 chr11 2398846 + coding NA chr13 82264248 + intergenic > 5 8 73 79 0.000 0.888 145 221 0.069 0.239 75 74 TCGCCGCCGTGGGAGTGGAGGGCTGCACCAAGTGCATCAAGTACCTGCTCTTCGTCTTCAATTTCGTCTTCTGGGACTTAAAGGAGAAGAAGGAAGTTGTGGAAGAGGCAGAAAATGGAAGAGACGCCCCTGCTAACGGGAATGCTAATGAGG CTX 228.86 HQ 0 CLoss , NM_001297649,NM_004356 , , , ,66 , , , , , , , , , , , ; geneB_no_transcripts , , SJBALL020704_D1 MIR548BA chr5 1949375 + intergenic IRX4 chr5 1882862 - 5utr > 3 4 66 114 0.000 0.034 145 66 0.169 0.152 67 67 CAGGCTGAGTCCTAAGGCCCTGGTCCTGTGCCCAGTGTGGTGCCTTGGAAGTTCTGAAAGTCACAGCGCCTAGAAGCCTGCAGCTCCGGAGCAGTGGCCGCGCCACGCCGGCCCCAGCGCGCAGAACCCTGCAGGCCCCGCCCGTCCGCCCCGGGCCGCGCCCGCCATGTCCTACCCGCAG ITX 206.08 HQ 0 other 0,0,0,0,0 ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, NM_001278632,NM_001278633,NM_001278634,NM_001278635,NM_016358 -33,-33,-33,-33,-33 ,,,, tuple,tuple,tuple,tuple,tuple ,,,, 1560,1638,1560,1638,1560 ,,,, ,,,, ,,,, ;;;; geneA_no_transcript_IDs_found geneB_transcripts=NM_001278632,NM_001278633,NM_001278634,NM_001278635,NM_016358;geneb_utr_codons=13 ,,,, ,,,, SJBALL020704_D1 WNT9A chr1 228135494 - coding SNAP47 chr1 227935394 + coding > 6 3 79 71 0.000 0.078 187 89 0.300 0.042 80 80 CGCTGGCGCGCTGGCTGGCCGCGGCCTTCGGGCTGACGCTGCTGCTCGCCGCGCTGCGCCCTTCGGCCGCCTACTTCGGAGGCAGAAGAGGCCTGGACCTTGGCGCACACAGACCCAGGAACAGATGAGCAGGGATGTCTGCATCCACACC ITX 199.43 HQ 0 Fusion 0,0 NM_003395, , 1, , 95, , , NM_053052,NM_053052 31,31 2, tuple,tuple 92,92 1395,1395 26, , AGALAGRGLRADAAARRAAPFGRLLRRQKRPGPWRTQTQEQMSRDVCIHT, WNT9A:NM_003395[1,1]-SNAP47:NM_053052[2,5]; geneB_transcripts=NM_053052 , 1, SJBALL020704_D1 WNT9A chr1 228135494 - coding IRX4 chr5 1882862 - 5utr > 3 4 82 77 0.000 0.000 135 50 0.300 0.152 83 82 CCCCGCTGGCGCGCTGGCTGGCCGCGGCCTTCGGGCTGACGCTGCTGCTCGCCGCGCTGCGCCCTTCGGCCGCCTACTTCGGCGCCTAGAAGCCTGCAGCTCCGGAGCAGTGGCCGCGCCACGCCGGCCCCAGCGCGCAGAACCCTGCAGGCCCCGCC CTX 185.00 HQ 0 CLoss 0,0,0,0,0,0,0,0,0,0 NM_003395,NM_003395,NM_003395,NM_003395,NM_003395,,,,, 33,33,33,33,33,,,,, 1,1,1,1,1,,,,, tuple,tuple,tuple,tuple,tuple,,,,, 95,95,95,95,95,,,,, 26,26,26,26,26,,,,, 82,82,82,82,82,,,,, NM_001278632,NM_001278633,NM_001278634,NM_001278635,NM_016358,NM_001278632,NM_001278633,NM_001278634,NM_001278635,NM_016358 -33,-33,-33,-33,-33,-33,-33,-33,-33,-33 2,2,2,2,1,,,,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple ,,,,,,,,, 1560,1638,1560,1638,1560,1560,1638,1560,1638,1560 29,29,29,29,29,,,,, 89,89,89,89,89,,,,, PLARWLAAAFGLTLLLAALRPSAAYFGA*KPAAPEQWPRHAGPSAQNPAGPA,PLARWLAAAFGLTLLLAALRPSAAYFGA*KPAAPEQWPRHAGPSAQNPAGPA,PLARWLAAAFGLTLLLAALRPSAAYFGA*KPAAPEQWPRHAGPSAQNPAGPA,PLARWLAAAFGLTLLLAALRPSAAYFGA*KPAAPEQWPRHAGPSAQNPAGPA,PLARWLAAAFGLTLLLAALRPSAAYFGA*KPAAPEQWPRHAGPSAQNPAGPA,,,,, WNT9A:NM_003395[1,1]-IRX4:NM_001278632[2,6];WNT9A:NM_003395[1,1]-IRX4:NM_001278633[2,7];WNT9A:NM_003395[1,1]-IRX4:NM_001278634[2,6];WNT9A:NM_003395[1,1]-IRX4:NM_001278635[2,7];WNT9A:NM_003395[1,1]-IRX4:NM_016358[1,5];;;;; geneB_transcripts=NM_001278632,NM_001278633,NM_001278634,NM_001278635,NM_016358;geneb_utr_codons=13;not_inframe_due_to_intermediate_stop_codon A*,A*,A*,A*,A*,,,,, 2,2,2,2,2,,,,, SJBALL020704_D1 EBF1 chr5 158141125 - coding PDGFRB chr5 149506178 - coding > 23 29 128 235 0.000 0.017 889 1012 0.074 0.376 128 128 GTTTCCAGAGGTTACAGAAGGTCATTCCTCGGCACCCTGGTGACCCTGAGCGTTTGCCAAAGGAAGTAATACTCAAAAGGGCTGCGGATCTGGTAGAAGCACTGTATGGGATGCCACACAACAACCAGCCTTGCCCTTTAAGGTGGTGGTGATCTCAGCCATCCTGGCCCTGGTGGTGCTCACCATCATCTCCCTTATCATCCTCATCATGCTTTGGCAGAAGGTAAGCCCCTCCCTGGCCCAGTGGGTGAAGACTGGCACATCATTATTTTGCATAAATTCCACCCCTCTGCCCTCCTTGAATGCTGCGTGATCTGGCCACATGCAGGGCTCAGCATGGAACTCAGGTGGGGACTTGTGACG DEL 145.50 HQ 4 Fusion 0,0,0,3 NM_001290360,NM_024007,NM_182708, ,,, 12,12,11, ,,, 1194,1191,1098, ,,, ,,, NM_002609,NM_002609,NM_002609,NM_002609 527,527,527,527 11,11,11, blat,blat,blat,blat 1580,1580,1580,1580 3321,3321,3321,3321 43,43,43, ,,, FPEVTEGHSSAPW*P*AFAKGSNTQKGCGSGRSTVWDATQQPALPFKVVVISAILALVVLTIISLIILIMLWQKVSPSLAQWVKTGTSLFCINSTPLPSLNAA*SGHMQGSAWNSGGDL*,FPEVTEGHSSAPW*P*AFAKGSNTQKGCGSGRSTVWDATQQPALPFKVVVISAILALVVLTIISLIILIMLWQKVSPSLAQWVKTGTSLFCINSTPLPSLNAA*SGHMQGSAWNSGGDL*,FPEVTEGHSSAPW*P*AFAKGSNTQKGCGSGRSTVWDATQQPALPFKVVVISAILALVVLTIISLIILIMLWQKVSPSLAQWVKTGTSLFCINSTPLPSLNAA*SGHMQGSAWNSGGDL*, EBF1:NM_001290360[1,12]-PDGFRB:NM_002609[11,23];EBF1:NM_024007[1,12]-PDGFRB:NM_002609[11,23];EBF1:NM_182708[1,11]-PDGFRB:NM_002609[11,23]; geneB_transcripts=NM_002609 ,,, 1,1,1, SJBALL020704_D1 KDM4B chr19 5016350 + 5utr ANKLE2 chr12 133331719 - coding > 3 14 45 81 0.062 0.000 144 39 0.100 0.000 46 47 AGCGAATTTTTGGAGCATCTCCACCCAGGAACCTCGCCATCCAGAAGTGAAATGACAATGGATGCTCTGTTGGCTCGATTGAAACTTCTGAATCCAGATGACCTTAGAGAAGAAATCGTCAAAGCCGA CTX 144.00 HQ 0 NLoss 0,3 NM_015015, , 2, , , , , NM_015114,NM_015114 61,61 2, blat,blat 182,182 2817,2817 16, , SEFLEHLHPGTSPSRSEMTMDALLARLKLLNPDDLREEIVKA, KDM4B:NM_015015[1,2]-ANKLE2:NM_015114[2,13]; geneB_transcripts=NM_015114 , 0, SJBALL020704_D1 PDGFRB chr5 149509361 - coding EBF1 chr5 158139980 + coding ? 4 17 144 71 0.000 0.014 202 81 0.118 0.060 145 145 GCTGGGGAACAGTTCCGAAGAGGAGAGCCAGCTGGAGACTAACGTGACGTACTGGGAGGAGGAGCAGGAGTTTGAGGTGGTGAGCACACTGCGTCTGCAGCACGTGGATCGGCCACTGTCGGTGCGCTGCACGCTGCGCAACGCCTGATTGGTGGCTTGTGATGCCTCGGAGACATTCACGGCCAGTTGTCCACTGAACGAATTCACGCCCATCA ITX 117.13 HQ 4 Fusion unhandled orientation ? SJBALL020704_D1 SDF4 chr1 1163847 - coding NA chr13 82264248 + intergenic > 3 3 142 27 0.000 0.916 68 112 0.018 0.239 143 142 GAACGGGGTGAAGCTGGAGATGGACGGGCACCTCAATCGCGGCTTCCACCAGGAGGTCTTCCTAGGCAAGGACCTGGGTGGCTTTGATGAGGACGCGGAGCCGCGGCGGAGCCGGAGGAAGCTGATGGTCATCTTTTCCAAGACTTAAAGGAGAAGAAGGAAGTTGTG CTX 112.00 HQ 1 CLoss , NM_016176,NM_016547 , , , 326,326 , , , , , , , , , , , ; geneB_no_transcripts , , SJBALL020704_D1 PDGFRB chr5 149524601 + intron EBF1 chr5 158139914 - intron ? 6 5 116 152 0.025 0.000 128 185 0.082 0.016 117 117 CTTAAAAATAACAATAATAATAATAGCTACCTCTGATTTAGTACAGTTGACCCTTGAACTACACAGGTTTGAACTGTGCAGGTCCACTAACACGTGAATGTTCCACACATGTGAAACATGAACAATTTTTACATTAAAAAATTATTTTCATCCCAAAAGGGAGATTCTTAGTTTGTGTGTATAAGATATTATTGTACAATATTGGTCCTAGCTATCATTCGGGTAATCTAATATAGAGGGCTAGAAAGGATGCATGCATTTAGCCATCT ITX 38.96 HQ 4 other unhandled orientation ? SJBALL020704_D1 EBF1 chr5 158139296 - coding PDGFRB chr5 149525584 - intron > 2 6 100 127 0.010 0.000 82 243 0.008 0.200 101 101 GATTGCCACCATCTGAATGCCACCCTCACCTCCGGTTTTGCCCCCGCCCCTCAGGTTTCACCCGCATCTCAAGCAGCGTATCACCACACGGGTACGTGCCGAAAATGGAGTGACTGTTTCCCACTCAAACTGTCAGCTTCAGCTTTACCCAGCTCAAAAGACAGCGTGAAAGAGTGAAAGGAGAAGTTGGGACAAAGAAGGCGAAAAGATAAGGCTGACGACTTTATT DEL 24.07 HQ 4 CLoss ,, NM_001290360,NM_024007,NM_182708 ,, ,, ,, 1418,1415,1322 ,, ,, NM_002609,NM_002609,NM_002609 ,, ,, ,, ,, 3321,3321,3321 ,, ,, ,, ;; geneB_no_inframe_contig_found geneB_transcripts=NM_002609;geneb_utr_codons=2 ,, ,, SJBALL020704_D1 PPP1R37 chr19 45596785 + coding TSSC4 chr11 2423523 + 5utr > 3 4 74 65 0.000 0.000 24 172 0.136 0.000 74 75 CAAGCGCGTCACATTCCCGTCCGACGAGGATATCGTGTCTGGAGCAGTGGAGCCCAAAGACCCCTGGAGACATGTTGAGCAGCTGAACAGAGGCCGCGCCGGGGCACTCCGAGGCCTGAGACGACCACGCCTGTGCCGCT CTX 24.00 HQ 0 CLoss ,,,, NM_019121,NM_019121,NM_019121,NM_019121,NM_019121 ,,,, ,,,, ,,,, 202,202,202,202,202 ,,,, ,,,, NM_001297658,NM_001297659,NM_001297660,NM_001297661,NM_005706 ,,,, ,,,, ,,,, ,,,, 990,990,990,798,990 ,,,, ,,,, ,,,, ;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001297658,NM_001297659,NM_001297660,NM_001297661,NM_005706;geneb_utr_codons=13 ,,,, ,,,, SJBALL020704_D1 PDGFRB chr5 149508874 - intron EBF1 chr5 158139898 + intron ? 1 7 90 160 0.053 0.000 11 222 0.000 0.028 90 90 CTCCAGTCACTCCTGTAAAGCTAGAGTGTATGTGTATAAGCATACACCTGTGCACTATGCCTGTCCATGTATGTAAACCCACCACGTGTTTGTAAAAATTGTTCATGACCAATAAATGAGGAGATGGGGTGCTTAAGGTTGGGGAGGGAAGAGAAAAGCAAGCTTCTGACCCTGATTGGTGGCTTGTGATGCCTCGGAGACATTCACGGCCAGTTGTCCACTGAACGAATTCACGCCCATCATCCCTGCG ITX 17.82 HQ 4 other unhandled orientation ? SJBALL020704_D1 SLC7A5 chr16 87885330 - coding CBFA2T3 chr16 88968065 - coding > 5 1 52 152 0.000 0.013 195 16 0.085 0.056 53 53 CTCCTGGCCCTGGCCCTGATCATCCTGCTGGGCTTCGTCCAGATCGGGAAGGCCCCAGTGGACAGGAAAGCTAAGGCCTCAGCGATGCCGGACTCCCCAGCGGAGGTGAAGACGCAGCCCCGGTCCACACCCCCCAGCATGCCGCCCCCACCGCCTGCCGCATCCCAGGGGGCCACACGCCCCCCCTCCTTCACGCCACACACACTGATGAACG INS 227.01 LQ 2 Fusion 1,1 NM_003486,NM_003486 222,222 2,2 perfect,tuple 664,664 16,16 50,50 NM_005187,NM_175931 51,-10 2,2 tuple,tuple 152, 1962,1704 17,20 51,60 LLALALIILLGFVQIGKAPVDRKAKASAMPDSPAEVKTQPRSTPPSMPPPPPAASQGATRPPSFTPHTLMN,LLALALIILLGFVQIGKAPVDRKAKASAMPDSPAEVKTQPRSTPPSMPPPPPAASQGATRPPSFTPHTLMN SLC7A5:NM_003486[1,2]-CBFA2T3:NM_005187[2,12];SLC7A5:NM_003486[1,2]-CBFA2T3:NM_175931[2,11] geneB_transcripts=NM_005187,NM_175931;geneb_utr_codons=11;reannotated geneA from SLC7A5,MIR6775 to SLC7A5 ,APV 0,0 SJBALL020704_D1 TTYH3 chr7 2671912 + coding LFNG chr7 2564330 + coding > 4 1 84 119 0.000 0.025 114 20 0.369 0.000 85 85 CTCCTGCACCGGCTGCCCCACTTCGACCTGAGCTGGGAGGCCACTAGCAGCCAGTTCCGGCCCGAGGACACCGACTACCAGCAGACGTTCATCTTCACTGACGGGGAAGATGAGGCCCTGGCCAGGCACACGGGCAACGTGGTCATCACAAACTGCTCGGCCGCCCACAGCCGCCAGGCGCTGTCCTGCAAGATGGCCGTGGA INS 222.39 LQ 0 Fusion 1,1,1,1 NM_025250,NM_025250,NM_025250,NM_025250 42,42,42,42 1,1,1,1 perfect,perfect,perfect,perfect 123,123,123,123 27,27,27,27 83,83,83,83 NM_001040167,NM_001040168,NM_001166355,NM_002304 145,145,74,16 2,2,3,3 tuple,tuple,tuple,tuple 434,434,221,47 1140,1086,927,753 28,28,28,28 84,84,84,84 LLHRLPHFDLSWEATSSQFRPEDTDYQQTFIFTDGEDEALARHTGNVVITNCSAAHSRQALSCKMAV,LLHRLPHFDLSWEATSSQFRPEDTDYQQTFIFTDGEDEALARHTGNVVITNCSAAHSRQALSCKMAV,LLHRLPHFDLSWEATSSQFRPEDTDYQQTFIFTDGEDEALARHTGNVVITNCSAAHSRQALSCKMAV,LLHRLPHFDLSWEATSSQFRPEDTDYQQTFIFTDGEDEALARHTGNVVITNCSAAHSRQALSCKMAV TTYH3:NM_025250[1,1]-LFNG:NM_001040167[2,8];TTYH3:NM_025250[1,1]-LFNG:NM_001040168[2,8];TTYH3:NM_025250[1,1]-LFNG:NM_001166355[3,9];TTYH3:NM_025250[1,1]-LFNG:NM_002304[3,9] geneB_transcripts=NM_001040167,NM_001040168,NM_001166355,NM_002304;reannotated geneB from LFNG,MIR4648 to LFNG ,,, 0,0,0,0 SJBALL020704_D1 GUK1 chr1 228328064 + coding SKI chr1 2234416 + coding > 2 5 82 37 0.000 0.764 49 210 0.010 0.360 117 117 CTGTGCCATGGTGACTTATAGCCAGGACCGTCCGGTGGGCGGAAGAGGTGGCCCCGGATGCTGCGGCGCCCGCTGGCCGGGCTGGCTGCGGCCGCCCTGGGCCGGGCCCCACCGGACGGTCTCCTCTGAGCCTCCGGCCTCCATAAGACCCAAA INS 210.00 LQ 2 Fusion 0,0,0,0,3 NM_000858,NM_001159390,NM_001242839,NM_001242840, ,,,, 1,1,1,1, ,,,, ,61,,61, ,,,, ,,,, NM_003036,NM_003036,NM_003036,NM_003036,NM_003036 324,324,324,324,324 2,2,2,2, tuple,tuple,tuple,tuple,tuple 970,970,970,970,970 2187,2187,2187,2187,2187 39,39,39,39, ,,,, CAMVTYSQDRPVGGRGGPGCCGARWPGWLRPPWAGPHRTVSSEPPASIRPK,CAMVTYSQDRPVGGRGGPGCCGARWPGWLRPPWAGPHRTVSSEPPASIRPK,CAMVTYSQDRPVGGRGGPGCCGARWPGWLRPPWAGPHRTVSSEPPASIRPK,CAMVTYSQDRPVGGRGGPGCCGARWPGWLRPPWAGPHRTVSSEPPASIRPK, GUK1:NM_000858[1,1]-SKI:NM_003036[2,7];GUK1:NM_001159390[1,1]-SKI:NM_003036[2,7];GUK1:NM_001242839[1,1]-SKI:NM_003036[2,7];GUK1:NM_001242840[1,1]-SKI:NM_003036[2,7]; geneB_transcripts=NM_003036 ,,,, 1,1,1,1, SJBALL020704_D1 SLBP chr4 1705321 - coding SPATA33 chr16 89724654 + coding > 0 3 55 204 0.000 0.000 0 101 0.000 0.111 55 51 AGTGCAGTTGAAGAAGATGAAATGAGGACCAGAGTTAACAAAGAAATGGCAAGGTGAGGAGCAAAAGAAGGGATCCACCTATTCAGTTCCAAAATCTAAGGAGAAGTTGATGGAGAAGCATTCCCAGGAAGCCAGGCAGGCAGACAGGGAGTCGGAGAAGCCTGTGGACAGCCTCCACCCGGGGGCCGGGACAGCCAAGCACCCGCCGCCGGCAGCTTCGCTGGAAGAGAAACCTGATGTAAAGCAAAAGTCCAG CTX 202.00 LQ 0 upTSS 0,0,0,0,0,3,2,2,3,3 NM_006527,NM_006527,NM_006527,NM_006527,NM_006527,,,,, ,,,,,,,,, 3,3,3,3,3,,,,, ,,,,,,,,, 281,281,281,281,281,,,,, ,,,,,,,,, ,,,,,,,,, NM_001271907,NM_001271908,NM_001271909,NM_001271910,NM_153025,NM_001271907,NM_001271908,NM_001271909,NM_001271910,NM_153025 13,-18,-19,13,12,13,-18,-19,13,12 2,2,1,2,2,,,,, tuple,tuple,tuple,tuple,blat,tuple,tuple,tuple,tuple,blat 38,,,38,35,38,,,38,35 423,330,330,219,420,423,330,330,219,420 17,20,19,17,18,,,,, ,,,,,,,,, VQLKKMK*GPELTKKWQGEEQKKGSTYSVPKSKEKLMEKHSQEARQADRESEKPVDSLHPGAGTAKHPPPAASLEEKPDVKQKS,VQLKKMK*GPELTKKWQGEEQKKGSTYSVPKSKEKLMEKHSQEARQADRESEKPVDSLHPGAGTAKHPPPAASLEEKPDVKQKS,VQLKKMK*GPELTKKWQGEEQKKGSTYSVPKSKEKLMEKHSQEARQADRESEKPVDSLHPGAGTAKHPPPAASLEEKPDVKQKS,VQLKKMK*GPELTKKWQGEEQKKGSTYSVPKSKEKLMEKHSQEARQADRESEKPVDSLHPGAGTAKHPPPAASLEEKPDVKQKS,VQLKKMK*GPELTKKWQGEEQKKGSTYSVPKSKEKLMEKHSQEARQADRESEKPVDSLHPGAGTAKHPPPAASLEEKPDVKQKS,,,,, SLBP:NM_006527[1,3]-SPATA33:NM_001271907[2,3];SLBP:NM_006527[1,3]-SPATA33:NM_001271908[2,3];SLBP:NM_006527[1,3]-SPATA33:NM_001271909[1,2];SLBP:NM_006527[1,3]-SPATA33:NM_001271910[2,3];SLBP:NM_006527[1,3]-SPATA33:NM_153025[2,3];;;;; geneB_transcripts=NM_001271907,NM_001271908,NM_001271909,NM_001271910,NM_153025;geneb_utr_codons=13 ,,,,,,,,, 1,1,1,1,1,,,,, SJBALL020704_D1 SH2D4B chr10 82369309 + coding KLHL24 chr3 183361270 + 5utr > 0 5 200 61 0.000 0.047 0 188 0.065 0.200 200 200 ATGAGCAGGAGGCAAGACTCTACCACCACCTCCCCGACCCGGGTCTGCCGCAGCCCCTTGCCCTGCCGGTCAGGACCTGGGAGCGCCCGCTGCGCCCAGTCTCCAGAGATGTCATCGTCCGCTGGTTTAAGGAGGAGCAGCTGCCTCGCCGAGCTGGCTTCGAGAGGAACACCAAGTTCATCGCCCCCTGGTTCCATGGTGTGGAAATTAAAAGAACACACATATTTTGACTGGGGCTTTGATCAACCAAATGCTAAAAAGCCACATAAAGA CTX 188.00 LQ 0 CLoss 0,0,0 NM_001145719,NM_207372, ,, 6,6, ,, 841,985, ,, ,, NM_017644,NM_017644,NM_017644 -40,-40,-40 2,2, tuple,tuple,tuple ,, 1803,1803,1803 69,69, ,, *AGGKTLPPPPRPGSAAAPCPAGQDLGAPAAPSLQRCHRPLV*GGAAASPSWLREEHQVHRPLVPWCGN*KNTHILTGALINQMLKSHIK,*AGGKTLPPPPRPGSAAAPCPAGQDLGAPAAPSLQRCHRPLV*GGAAASPSWLREEHQVHRPLVPWCGN*KNTHILTGALINQMLKSHIK, SH2D4B:NM_001145719[1,6]-KLHL24:NM_017644[2,8];SH2D4B:NM_207372[1,6]-KLHL24:NM_017644[2,8]; geneB_transcripts=NM_017644;geneb_utr_codons=13 ,, 1,1, SJBALL020704_D1 CXCR4 chr2 136875620 - coding KLHL24 chr3 183361270 + 5utr > 0 4 59 285 0.000 0.014 0 179 0.000 0.200 59 65 GGCCTGAGTGCTCCAGTAGCCACCGCATCTGGAGAACCAGCGGTTACCATGGAGGGGATGCAGGTGTGGAAATTAAAAGAACACACATATTTTGACTGGGGCTTTGATCAACCAAATGCTAAAAAGCCACATAAAGAAGATCCCTAATAGTCATTTCTCAACAATTATATAGTCAACTGATGTAACAATGGTACTAATATTGGGACGCAGACTAAACAGAGAGGATCTTGGGGTGCGTGATTCCCCAGCAACTAAGCGAAAAGTTTTTGAAATGGACCCCAAATCTCTGACAGGTCATGAGTTTTTTGACTTCTCTTCAGGATCATCCCATGCCGAAAACATACTCCAGAA CTX 179.00 LQ 1 CLoss 0,3 NM_003467, , 1, , 11, , , NM_017644,NM_017644 -40,-40 2, tuple,tuple , 1803,1803 24, , A*VLQ*PPHLENQRLPWRGCRCGN*KNTHILTGALINQMLKSHIKKIPNSHFSTII*STDVTMVLILGRRLNREDLGVRDSPATKRKVFEMDPKSLTGHEFFDFSSGSSHAENILQ, CXCR4:NM_003467[1,1]-KLHL24:NM_017644[2,8]; geneB_transcripts=NM_017644;geneb_utr_codons=13 , 1, SJBALL020704_D1 SLC12A7 chr5 1111985 - coding IRX4 chr5 1882862 - 5utr > 0 12 60 73 0.016 0.000 0 172 0.167 0.152 60 60 GCCGAGCGGACGGAGGCTCCGGGCACCCCCGAGGGCCCCGAGCCCGAGCGCCCCAGCCCGGCGCCTAGAAGCCTGCAGCTCCGGAGCAGTGGCCGCGCCACGCCGGCCCCAGCGCGCAGAACCCTGCAGGCCCAGATCG INS 169.18 LQ 0 CLoss 0,0,0,0,0,0,0,0,0,0 NM_006598,NM_006598,NM_006598,NM_006598,NM_006598,,,,, ,,,,,,,,, 1,1,1,1,1,,,,, ,,,,,,,,, 122,122,122,122,122,,,,, ,,,,,,,,, ,,,,,,,,, NM_001278632,NM_001278633,NM_001278634,NM_001278635,NM_016358,NM_001278632,NM_001278633,NM_001278634,NM_001278635,NM_016358 -33,-33,-33,-33,-33,-33,-33,-33,-33,-33 2,2,2,2,1,,,,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple ,,,,,,,,, 1560,1638,1560,1638,1560,1560,1638,1560,1638,1560 22,22,22,22,22,,,,, ,,,,,,,,, RADGGSGHPRGPRARAPQPGA*KPAAPEQWPRHAGPSAQNPAGPD,RADGGSGHPRGPRARAPQPGA*KPAAPEQWPRHAGPSAQNPAGPD,RADGGSGHPRGPRARAPQPGA*KPAAPEQWPRHAGPSAQNPAGPD,RADGGSGHPRGPRARAPQPGA*KPAAPEQWPRHAGPSAQNPAGPD,RADGGSGHPRGPRARAPQPGA*KPAAPEQWPRHAGPSAQNPAGPD,,,,, SLC12A7:NM_006598[1,1]-IRX4:NM_001278632[2,6];SLC12A7:NM_006598[1,1]-IRX4:NM_001278633[2,7];SLC12A7:NM_006598[1,1]-IRX4:NM_001278634[2,6];SLC12A7:NM_006598[1,1]-IRX4:NM_001278635[2,7];SLC12A7:NM_006598[1,1]-IRX4:NM_016358[1,5];;;;; geneB_transcripts=NM_001278632,NM_001278633,NM_001278634,NM_001278635,NM_016358;geneb_utr_codons=13 ,,,,,,,,, 2,2,2,2,2,,,,, SJBALL020704_D1 SKI chr1 2236025 + coding KLF16 chr19 1854761 - coding > 0 6 56 63 0.000 0.045 0 156 0.116 0.104 56 54 GAAGCAGGAGGAGAAGCTCAGCGCAGCCCTGCAGGCCAAGCGCAGCCTCCACCAGGGGAACGCCCTTTTGCTTGTGACTGGCAGGGCTGCGACAAGAAGTTCGCCCGCTCCGACGAG CTX 156.00 LQ 1 Fusion 0,0 NM_003036, , 5, , 1767, , , NM_031918,NM_031918 153,153 2, tuple,tuple 458,458 759,759 18, , EAGGEAQRSPAGQAQPPPGERPFACDWQGCDKKFARSDE, SKI:NM_003036[1,5]-KLF16:NM_031918[2,2]; geneB_transcripts=NM_031918 , 0, SJBALL020704_D1 SH3TC1 chr4 8201131 + 5utr TMEM129 chr4 1720357 - coding > 3 1 36 115 0.100 0.094 162 37 0.122 0.028 37 37 CTGTGGGCCTGGGAGCTGCCTCTGAGGAACACGCCGCAGGCTACTACGTGGGCATGTGCCTTGCGGCTTCAGAAAAGCGGCTCCACGCCCTCAGCCAGGCCCCTGAGGCCTGGCGGCTCTTCCTGCTGCTGGCCGTGACCCTCCCCTCCATC ITX 146.70 LQ 0 NLoss 0,0,3,3 NM_018986,NM_018986,, ,,, 1,1,, ,,, ,,, ,,, ,,, NM_001127266,NM_138385,NM_001127266,NM_138385 69,69,69,69 2,2,, tuple,tuple,tuple,tuple 206,206,206,206 1089,699,1089,699 12,12,, ,,, VGLGAASEEHAAGYYVGMCLAASEKRLHALSQAPEAWRLFLLLAVTLPSI,VGLGAASEEHAAGYYVGMCLAASEKRLHALSQAPEAWRLFLLLAVTLPSI,, SH3TC1:NM_018986[1,1]-TMEM129:NM_001127266[2,4];SH3TC1:NM_018986[1,1]-TMEM129:NM_138385[2,3];; geneB_transcripts=NM_001127266,NM_138385 ,,, 2,2,, SJBALL020704_D1 PHRF1 chr11 587468 + coding ANKLE2 chr12 133331721 - coding > 0 4 121 51 0.000 0.000 0 112 0.000 0.237 122 116 TGATGATGATGCAGAGAGCTGCCCAATCTGTCTCAACGCATTCAGAGACCAGGCCGTGGGGACGCCGGAGAACTGTGCACATTACTTCTGCCTGGACTGCATTGTCGAATGGTCCAAGGTGAAATGACAATGGATGCTCTGTTGGCTCGATTGAAACTTCTGAATCC CTX 112.00 LQ 0 Fusion 0,0,0,0,3 NM_001286581,NM_001286582,NM_001286583,NM_020901, ,,,, 4,4,4,4, ,,,, 420,417,408,420, ,,,, ,,,, NM_015114,NM_015114,NM_015114,NM_015114,NM_015114 61,61,61,61,61 2,2,2,2, tuple,tuple,tuple,tuple,tuple 182,182,182,182,182 2817,2817,2817,2817,2817 39,39,39,39, ,,,, ***CRELPNLSQRIQRPGRGDAGELCTLLLPGLHCRMVQGEMTMDALLARLKLLN,***CRELPNLSQRIQRPGRGDAGELCTLLLPGLHCRMVQGEMTMDALLARLKLLN,***CRELPNLSQRIQRPGRGDAGELCTLLLPGLHCRMVQGEMTMDALLARLKLLN,***CRELPNLSQRIQRPGRGDAGELCTLLLPGLHCRMVQGEMTMDALLARLKLLN, PHRF1:NM_001286581[1,4]-ANKLE2:NM_015114[2,13];PHRF1:NM_001286582[1,4]-ANKLE2:NM_015114[2,13];PHRF1:NM_001286583[1,4]-ANKLE2:NM_015114[2,13];PHRF1:NM_020901[1,4]-ANKLE2:NM_015114[2,13]; geneB_transcripts=NM_015114 ,,,, 0,0,0,0, SJBALL020704_D1 SFMBT1 chr3 53080476 - intergenic TKT chr3 53276260 - coding > 4 2 59 54 0.000 0.000 111 36 0.545 0.008 60 63 CCGGTCCTCCAGGCCCGCCCCGCGACCCCCTCTGGGACCCCCGCCGCTCTGTCTACAACCCGAGCCACCCCACGTCATGCTGCAGCGCCGCAGAGATCATGGCTGTCCTCTTTTTC INS 111.10 LQ 0 NLoss 0,0,0 ,, ,, ,, ,, ,, ,, ,, NM_001064,NM_001135055,NM_001258028 36,36,36 ,, blat,blat,blat 108,108,108 1872,1872,1896 ,, ,, ,, ;; geneA_no_transcript_IDs_found geneB_transcripts=NM_001064,NM_001135055,NM_001258028 ,, ,, SJBALL020704_D1 SLC7A5 chr16 87902492 - coding CBFA2T3 chr16 88958893 - coding > 6 1 73 50 0.497 0.000 141 8 0.050 0.081 91 92 CTGGTTTCCCCCCCCTCCCTGCTCAAGCCGCTCTTCCCCACCTGCCCGGTGCCCGAGGAGGCAGCCAAGCTCGTGGCCTGCCTCTGCGTGCTGATGAACGGCAGCAGCCACTCACCAACAGCCATCAATGGTGCACCGTGC INS 107.62 LQ 2 Fusion 1,1 NM_003486,NM_003486 180,180 1,1 tuple,tuple 537,537 29,29 89,89 NM_005187,NM_175931 127,41 4,3 tuple,tuple 380,122 1962,1704 30,30 90,90 LVSPPSLLKPLFPTCPVPEEAAKLVACLCVLMNGSSHSPTAINGAPC,LVSPPSLLKPLFPTCPVPEEAAKLVACLCVLMNGSSHSPTAINGAPC SLC7A5:NM_003486[1,1]-CBFA2T3:NM_005187[4,12];SLC7A5:NM_003486[1,1]-CBFA2T3:NM_175931[3,11] geneB_transcripts=NM_005187,NM_175931;reannotated geneA from SLC7A5,MIR6775 to SLC7A5 , 0,0 SJBALL020704_D1 SH3TC1 chr4 8201132 + 5utr DOT1L chr19 2189729 + coding > 0 3 61 98 0.000 0.010 0 107 0.122 0.121 61 59 CTGGTTCCTGCGTGCTACGGCCCTGTGGGCCTGGGAGCTGCCTCTGAGGAACACGCCGCAGCTTCGAGAGCATGCAGAGGCTCTGCGACAAGTACAACCGTGCCATCGACAGCATCCACCAGCTGGTAGGTGGCTTGCCCCTGCCCAGAGGGGGTTA CTX 107.00 LQ 0 NLoss 0,3 NM_018986, , 1, , , , , NM_032482,NM_032482 67,67 4, tuple,tuple 201,201 4614,4614 19, , GSCVLRPCGPGSCL*GTRRSFESMQRLCDKYNRAIDSIHQLVGGLPLPRGG, SH3TC1:NM_018986[1,1]-DOT1L:NM_032482[4,28]; geneB_transcripts=NM_032482 , 2, SJBALL020704_D1 INPP5A chr10 134351675 + coding HNRNPF chr10 43892038 - 5utr > 4 2 94 46 0.031 0.000 104 74 0.190 0.075 95 96 GCCCGCGCCGCCCGGGCACCATGGCGGGGAAGGCGGCCGCCCCGGGCACCGCGGTGCTGCTGGTCACGGCCAACGTGGGCTCGCTCTTCGACGACGTTGAGAACAAAAACATGCACCTGGAGTTTCCCCGGAGCCCTCTGC ITX 101.49 LQ 0 Fusion 1,1,1,1,1,1 NM_005539,NM_005539,NM_005539,NM_005539,NM_005539,NM_005539 26,26,26,26,26,26 1,1,1,1,1,1 tuple,tuple,tuple,tuple,tuple,tuple 75,75,75,75,75,75 30,30,30,30,30,30 94,94,94,94,94,94 NM_001098204,NM_001098205,NM_001098206,NM_001098207,NM_001098208,NM_004966 -81,-81,-81,-81,-81,-81 2,2,2,2,1,2 tuple,tuple,tuple,tuple,tuple,tuple ,,,,, 1248,1248,1248,1248,1248,1248 34,34,34,34,34,34 104,104,104,104,104,104 PRRPGTMAGKAAAPGTAVLLVTANVGSLFDDVENKNMHLEFPRSPL,PRRPGTMAGKAAAPGTAVLLVTANVGSLFDDVENKNMHLEFPRSPL,PRRPGTMAGKAAAPGTAVLLVTANVGSLFDDVENKNMHLEFPRSPL,PRRPGTMAGKAAAPGTAVLLVTANVGSLFDDVENKNMHLEFPRSPL,PRRPGTMAGKAAAPGTAVLLVTANVGSLFDDVENKNMHLEFPRSPL,PRRPGTMAGKAAAPGTAVLLVTANVGSLFDDVENKNMHLEFPRSPL INPP5A:NM_005539[1,1]-HNRNPF:NM_001098204[2,4];INPP5A:NM_005539[1,1]-HNRNPF:NM_001098205[2,4];INPP5A:NM_005539[1,1]-HNRNPF:NM_001098206[2,4];INPP5A:NM_005539[1,1]-HNRNPF:NM_001098207[2,4];INPP5A:NM_005539[1,1]-HNRNPF:NM_001098208[1,3];INPP5A:NM_005539[1,1]-HNRNPF:NM_004966[2,4] geneB_transcripts=NM_001098204,NM_001098205,NM_001098206,NM_001098207,NM_001098208,NM_004966;geneb_utr_codons=13 VEN,VEN,VEN,VEN,VEN,VEN 2,2,2,2,2,2 SJBALL020704_D1 CTBP2 chr10 126727566 - coding SEPT9 chr17 75478224 + coding > 2 2 184 88 0.654 0.000 122 180 0.056 0.000 185 183 AGAGTTTGTGGACAGATTTATATTGGGTTCATAGTGGCGTCATGCACGCAGACTCCTGCAAGTTCCCCTAAGTTCTTAGAGGACTGCTTTGCCTTTTGATCTGAGAGTTGCAAAGTTCCATAAAGAATGGCCCTTGTGGATAAGCACAAAGTCAAGAGACAGCGATTGGACAGAATTTGTGAAGCCACTGAGGCGGCTCCCAGCTGCGTTGGCGACATGGCCGACACCCCCAGAGATGCCGGGCTCAAGCAGGCGCCTGCATCACGGAAC CTX 100.03 LQ 2 Fusion 1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1 NM_001083914,NM_001290214,NM_001290215,NM_001329,NM_001083914,NM_001290214,NM_001290215,NM_001329,NM_001083914,NM_001290214,NM_001290215,NM_001329,NM_001083914,NM_001290214,NM_001290215,NM_001329,NM_001083914,NM_001290214,NM_001290215,NM_001329,NM_001083914,NM_001290214,NM_001290215,NM_001329,NM_001083914,NM_001290214,NM_001290215,NM_001329,NM_001083914,NM_001290214,NM_001290215,NM_001329,NM_001083914,NM_001290214,NM_001290215,NM_001329,NM_001083914,NM_001290214,NM_001290215,NM_001329,NM_001083914,NM_001290214,NM_001290215,NM_001329 20,20,20,20,20,20,20,20,20,20,20,20,20,20,20,20,20,20,20,20,20,20,20,20,20,20,20,20,20,20,20,20,20,20,20,20,20,20,20,20,20,20,20,20 3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3 tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 58,58,58,58,58,58,58,58,58,58,58,58,58,58,58,58,58,58,58,58,58,58,58,58,58,58,58,58,58,58,58,58,58,58,58,58,58,58,58,58,58,58,58,58 60,60,60,60,60,60,60,60,60,60,60,60,60,60,60,60,60,60,60,60,60,60,60,60,60,60,60,60,60,60,60,60,60,60,60,60,60,60,60,60,60,60,60,60 182,182,182,182,182,182,182,182,182,182,182,182,182,182,182,182,182,182,182,182,182,182,182,182,182,182,182,182,182,182,182,182,182,182,182,182,182,182,182,182,182,182,182,182 NM_001113491,NM_001113491,NM_001113491,NM_001113491,NM_001113492,NM_001113492,NM_001113492,NM_001113492,NM_001113493,NM_001113493,NM_001113493,NM_001113493,NM_001113494,NM_001113494,NM_001113494,NM_001113494,NM_001113495,NM_001113495,NM_001113495,NM_001113495,NM_001113496,NM_001113496,NM_001113496,NM_001113496,NM_001293695,NM_001293695,NM_001293695,NM_001293695,NM_001293696,NM_001293696,NM_001293696,NM_001293696,NM_001293697,NM_001293697,NM_001293697,NM_001293697,NM_001293698,NM_001293698,NM_001293698,NM_001293698,NM_006640,NM_006640,NM_006640,NM_006640 241,241,241,241,77,77,77,77,234,234,234,234,77,77,77,77,129,129,129,129,-10,-10,-10,-10,222,222,222,222,17,17,17,17,-10,-10,-10,-10,-10,-10,-10,-10,223,223,223,223 4,4,4,4,4,4,4,4,3,3,3,3,3,3,3,3,2,2,2,2,2,2,2,2,3,3,3,3,2,2,2,2,2,2,2,2,2,2,2,2,3,3,3,3 tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 722,722,722,722,230,230,230,230,701,701,701,701,230,230,230,230,386,386,386,386,,,,,665,665,665,665,50,50,50,50,,,,,,,,,668,668,668,668 1761,1761,1761,1761,1269,1269,1269,1269,1740,1740,1740,1740,1269,1269,1269,1269,1425,1425,1425,1425,1008,1008,1008,1008,1704,1704,1704,1704,1089,1089,1089,1089,1008,1008,1008,1008,1008,1008,1008,1008,1707,1707,1707,1707 61,61,61,61,61,61,61,61,61,61,61,61,61,61,61,61,61,61,61,61,64,64,64,64,61,61,61,61,61,61,61,61,64,64,64,64,64,64,64,64,61,61,61,61 183,183,183,183,183,183,183,183,183,183,183,183,183,183,183,183,183,183,183,183,192,192,192,192,183,183,183,183,183,183,183,183,192,192,192,192,192,192,192,192,183,183,183,183 RVCGQIYIGFIVASCTQTPASSPKFLEDCFAF*SESCKVP*RMALVDKHKVKRQRLDRICEATEAAPSCVGDMADTPRDAGLKQAPASRN,RVCGQIYIGFIVASCTQTPASSPKFLEDCFAF*SESCKVP*RMALVDKHKVKRQRLDRICEATEAAPSCVGDMADTPRDAGLKQAPASRN,RVCGQIYIGFIVASCTQTPASSPKFLEDCFAF*SESCKVP*RMALVDKHKVKRQRLDRICEATEAAPSCVGDMADTPRDAGLKQAPASRN,RVCGQIYIGFIVASCTQTPASSPKFLEDCFAF*SESCKVP*RMALVDKHKVKRQRLDRICEATEAAPSCVGDMADTPRDAGLKQAPASRN,RVCGQIYIGFIVASCTQTPASSPKFLEDCFAF*SESCKVP*RMALVDKHKVKRQRLDRICEATEAAPSCVGDMADTPRDAGLKQAPASRN,RVCGQIYIGFIVASCTQTPASSPKFLEDCFAF*SESCKVP*RMALVDKHKVKRQRLDRICEATEAAPSCVGDMADTPRDAGLKQAPASRN,RVCGQIYIGFIVASCTQTPASSPKFLEDCFAF*SESCKVP*RMALVDKHKVKRQRLDRICEATEAAPSCVGDMADTPRDAGLKQAPASRN,RVCGQIYIGFIVASCTQTPASSPKFLEDCFAF*SESCKVP*RMALVDKHKVKRQRLDRICEATEAAPSCVGDMADTPRDAGLKQAPASRN,RVCGQIYIGFIVASCTQTPASSPKFLEDCFAF*SESCKVP*RMALVDKHKVKRQRLDRICEATEAAPSCVGDMADTPRDAGLKQAPASRN,RVCGQIYIGFIVASCTQTPASSPKFLEDCFAF*SESCKVP*RMALVDKHKVKRQRLDRICEATEAAPSCVGDMADTPRDAGLKQAPASRN,RVCGQIYIGFIVASCTQTPASSPKFLEDCFAF*SESCKVP*RMALVDKHKVKRQRLDRICEATEAAPSCVGDMADTPRDAGLKQAPASRN,RVCGQIYIGFIVASCTQTPASSPKFLEDCFAF*SESCKVP*RMALVDKHKVKRQRLDRICEATEAAPSCVGDMADTPRDAGLKQAPASRN,RVCGQIYIGFIVASCTQTPASSPKFLEDCFAF*SESCKVP*RMALVDKHKVKRQRLDRICEATEAAPSCVGDMADTPRDAGLKQAPASRN,RVCGQIYIGFIVASCTQTPASSPKFLEDCFAF*SESCKVP*RMALVDKHKVKRQRLDRICEATEAAPSCVGDMADTPRDAGLKQAPASRN,RVCGQIYIGFIVASCTQTPASSPKFLEDCFAF*SESCKVP*RMALVDKHKVKRQRLDRICEATEAAPSCVGDMADTPRDAGLKQAPASRN,RVCGQIYIGFIVASCTQTPASSPKFLEDCFAF*SESCKVP*RMALVDKHKVKRQRLDRICEATEAAPSCVGDMADTPRDAGLKQAPASRN,RVCGQIYIGFIVASCTQTPASSPKFLEDCFAF*SESCKVP*RMALVDKHKVKRQRLDRICEATEAAPSCVGDMADTPRDAGLKQAPASRN,RVCGQIYIGFIVASCTQTPASSPKFLEDCFAF*SESCKVP*RMALVDKHKVKRQRLDRICEATEAAPSCVGDMADTPRDAGLKQAPASRN,RVCGQIYIGFIVASCTQTPASSPKFLEDCFAF*SESCKVP*RMALVDKHKVKRQRLDRICEATEAAPSCVGDMADTPRDAGLKQAPASRN,RVCGQIYIGFIVASCTQTPASSPKFLEDCFAF*SESCKVP*RMALVDKHKVKRQRLDRICEATEAAPSCVGDMADTPRDAGLKQAPASRN,RVCGQIYIGFIVASCTQTPASSPKFLEDCFAF*SESCKVP*RMALVDKHKVKRQRLDRICEATEAAPSCVGDMADTPRDAGLKQAPASRN,RVCGQIYIGFIVASCTQTPASSPKFLEDCFAF*SESCKVP*RMALVDKHKVKRQRLDRICEATEAAPSCVGDMADTPRDAGLKQAPASRN,RVCGQIYIGFIVASCTQTPASSPKFLEDCFAF*SESCKVP*RMALVDKHKVKRQRLDRICEATEAAPSCVGDMADTPRDAGLKQAPASRN,RVCGQIYIGFIVASCTQTPASSPKFLEDCFAF*SESCKVP*RMALVDKHKVKRQRLDRICEATEAAPSCVGDMADTPRDAGLKQAPASRN,RVCGQIYIGFIVASCTQTPASSPKFLEDCFAF*SESCKVP*RMALVDKHKVKRQRLDRICEATEAAPSCVGDMADTPRDAGLKQAPASRN,RVCGQIYIGFIVASCTQTPASSPKFLEDCFAF*SESCKVP*RMALVDKHKVKRQRLDRICEATEAAPSCVGDMADTPRDAGLKQAPASRN,RVCGQIYIGFIVASCTQTPASSPKFLEDCFAF*SESCKVP*RMALVDKHKVKRQRLDRICEATEAAPSCVGDMADTPRDAGLKQAPASRN,RVCGQIYIGFIVASCTQTPASSPKFLEDCFAF*SESCKVP*RMALVDKHKVKRQRLDRICEATEAAPSCVGDMADTPRDAGLKQAPASRN,RVCGQIYIGFIVASCTQTPASSPKFLEDCFAF*SESCKVP*RMALVDKHKVKRQRLDRICEATEAAPSCVGDMADTPRDAGLKQAPASRN,RVCGQIYIGFIVASCTQTPASSPKFLEDCFAF*SESCKVP*RMALVDKHKVKRQRLDRICEATEAAPSCVGDMADTPRDAGLKQAPASRN,RVCGQIYIGFIVASCTQTPASSPKFLEDCFAF*SESCKVP*RMALVDKHKVKRQRLDRICEATEAAPSCVGDMADTPRDAGLKQAPASRN,RVCGQIYIGFIVASCTQTPASSPKFLEDCFAF*SESCKVP*RMALVDKHKVKRQRLDRICEATEAAPSCVGDMADTPRDAGLKQAPASRN,RVCGQIYIGFIVASCTQTPASSPKFLEDCFAF*SESCKVP*RMALVDKHKVKRQRLDRICEATEAAPSCVGDMADTPRDAGLKQAPASRN,RVCGQIYIGFIVASCTQTPASSPKFLEDCFAF*SESCKVP*RMALVDKHKVKRQRLDRICEATEAAPSCVGDMADTPRDAGLKQAPASRN,RVCGQIYIGFIVASCTQTPASSPKFLEDCFAF*SESCKVP*RMALVDKHKVKRQRLDRICEATEAAPSCVGDMADTPRDAGLKQAPASRN,RVCGQIYIGFIVASCTQTPASSPKFLEDCFAF*SESCKVP*RMALVDKHKVKRQRLDRICEATEAAPSCVGDMADTPRDAGLKQAPASRN,RVCGQIYIGFIVASCTQTPASSPKFLEDCFAF*SESCKVP*RMALVDKHKVKRQRLDRICEATEAAPSCVGDMADTPRDAGLKQAPASRN,RVCGQIYIGFIVASCTQTPASSPKFLEDCFAF*SESCKVP*RMALVDKHKVKRQRLDRICEATEAAPSCVGDMADTPRDAGLKQAPASRN,RVCGQIYIGFIVASCTQTPASSPKFLEDCFAF*SESCKVP*RMALVDKHKVKRQRLDRICEATEAAPSCVGDMADTPRDAGLKQAPASRN,RVCGQIYIGFIVASCTQTPASSPKFLEDCFAF*SESCKVP*RMALVDKHKVKRQRLDRICEATEAAPSCVGDMADTPRDAGLKQAPASRN,RVCGQIYIGFIVASCTQTPASSPKFLEDCFAF*SESCKVP*RMALVDKHKVKRQRLDRICEATEAAPSCVGDMADTPRDAGLKQAPASRN,RVCGQIYIGFIVASCTQTPASSPKFLEDCFAF*SESCKVP*RMALVDKHKVKRQRLDRICEATEAAPSCVGDMADTPRDAGLKQAPASRN,RVCGQIYIGFIVASCTQTPASSPKFLEDCFAF*SESCKVP*RMALVDKHKVKRQRLDRICEATEAAPSCVGDMADTPRDAGLKQAPASRN,RVCGQIYIGFIVASCTQTPASSPKFLEDCFAF*SESCKVP*RMALVDKHKVKRQRLDRICEATEAAPSCVGDMADTPRDAGLKQAPASRN CTBP2:NM_001083914[1,3]-SEPT9:NM_001113491[4,12];CTBP2:NM_001290214[1,3]-SEPT9:NM_001113491[4,12];CTBP2:NM_001290215[1,3]-SEPT9:NM_001113491[4,12];CTBP2:NM_001329[1,3]-SEPT9:NM_001113491[4,12];CTBP2:NM_001083914[1,3]-SEPT9:NM_001113492[4,12];CTBP2:NM_001290214[1,3]-SEPT9:NM_001113492[4,12];CTBP2:NM_001290215[1,3]-SEPT9:NM_001113492[4,12];CTBP2:NM_001329[1,3]-SEPT9:NM_001113492[4,12];CTBP2:NM_001083914[1,3]-SEPT9:NM_001113493[3,11];CTBP2:NM_001290214[1,3]-SEPT9:NM_001113493[3,11];CTBP2:NM_001290215[1,3]-SEPT9:NM_001113493[3,11];CTBP2:NM_001329[1,3]-SEPT9:NM_001113493[3,11];CTBP2:NM_001083914[1,3]-SEPT9:NM_001113494[3,11];CTBP2:NM_001290214[1,3]-SEPT9:NM_001113494[3,11];CTBP2:NM_001290215[1,3]-SEPT9:NM_001113494[3,11];CTBP2:NM_001329[1,3]-SEPT9:NM_001113494[3,11];CTBP2:NM_001083914[1,3]-SEPT9:NM_001113495[2,10];CTBP2:NM_001290214[1,3]-SEPT9:NM_001113495[2,10];CTBP2:NM_001290215[1,3]-SEPT9:NM_001113495[2,10];CTBP2:NM_001329[1,3]-SEPT9:NM_001113495[2,10];CTBP2:NM_001083914[1,3]-SEPT9:NM_001113496[2,10];CTBP2:NM_001290214[1,3]-SEPT9:NM_001113496[2,10];CTBP2:NM_001290215[1,3]-SEPT9:NM_001113496[2,10];CTBP2:NM_001329[1,3]-SEPT9:NM_001113496[2,10];CTBP2:NM_001083914[1,3]-SEPT9:NM_001293695[3,11];CTBP2:NM_001290214[1,3]-SEPT9:NM_001293695[3,11];CTBP2:NM_001290215[1,3]-SEPT9:NM_001293695[3,11];CTBP2:NM_001329[1,3]-SEPT9:NM_001293695[3,11];CTBP2:NM_001083914[1,3]-SEPT9:NM_001293696[2,10];CTBP2:NM_001290214[1,3]-SEPT9:NM_001293696[2,10];CTBP2:NM_001290215[1,3]-SEPT9:NM_001293696[2,10];CTBP2:NM_001329[1,3]-SEPT9:NM_001293696[2,10];CTBP2:NM_001083914[1,3]-SEPT9:NM_001293697[2,10];CTBP2:NM_001290214[1,3]-SEPT9:NM_001293697[2,10];CTBP2:NM_001290215[1,3]-SEPT9:NM_001293697[2,10];CTBP2:NM_001329[1,3]-SEPT9:NM_001293697[2,10];CTBP2:NM_001083914[1,3]-SEPT9:NM_001293698[2,10];CTBP2:NM_001290214[1,3]-SEPT9:NM_001293698[2,10];CTBP2:NM_001290215[1,3]-SEPT9:NM_001293698[2,10];CTBP2:NM_001329[1,3]-SEPT9:NM_001293698[2,10];CTBP2:NM_001083914[1,3]-SEPT9:NM_006640[3,11];CTBP2:NM_001290214[1,3]-SEPT9:NM_006640[3,11];CTBP2:NM_001290215[1,3]-SEPT9:NM_006640[3,11];CTBP2:NM_001329[1,3]-SEPT9:NM_006640[3,11] geneB_transcripts=NM_001113491,NM_001113492,NM_001113493,NM_001113494,NM_001113495,NM_001113496,NM_001293695,NM_001293696,NM_001293697,NM_001293698,NM_006640;geneb_utr_codons=11 ,,,,,,,,,,,,,,,,,,,,ATE,ATE,ATE,ATE,,,,,,,,,ATE,ATE,ATE,ATE,ATE,ATE,ATE,ATE,,,, 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 SJBALL020704_D1 C10orf76 chr10 103649168 - coding FNBP1 chr9 132757240 - coding > 1 0 80 206 0.000 0.000 46 0 0.111 0.010 96 92 GTTGCTGTCATTTATAGCCATCATCAACCACTTTAACCCCAAAATTGAGTCCTACGCTGCTGTGAATCACATATCCCAACTGTCAGAGGAGCAGGATCAGTTTGACAACTTAGAAAAACACACACAGTGGGGAATTGATATTCTTGAGAAATATATCAAGTTTGTGAAAGAAAGGACAGAGATTGAACTCAGCTATGCAAAGCAACTCAGGAATCTTTCAAAGAAGTACCAACCTAAAAAGAACTCGAAGGAGGAAGAAGAATACAAGTATGTTTACCATTGAAAATTGTCTTGTAA CTX 92.00 LQ 2 Fusion 1 NM_024541 621 24 tuple 1860 30 93 NM_015033 9 2 tuple 25 1854 31 94 LLSFIAIINHFNPKIESYAAVNHISQLSEEQDQFDNLEKHTQWGIDILEKYIKFVKERTEIELSYAKQLRNLSKKYQPKKNSKEEEEYKYVYH*KLSC C10orf76:NM_024541[1,24]-FNBP1:NM_015033[2,17] geneB_transcripts=NM_015033 1 SJBALL020704_D1 ANP32A chr15 69113033 - coding LOC100507217 chr15 93428749 + 5utr > 6 1 86 52 0.737 0.055 79 8 0.126 0.002 87 87 GGAGCCTCTGCAGAGAGAGAGCGCGAGAGATGGAGATGGGCAGACGTATTCATTTAGAGCTGCGGAACAGGACGCCCTCTGATGTGACTTAAGAGATTAAAATTAATTTGGTTGCTGTTGGTTCTGAACAAATAATGA ITX 74.69 LQ 0 CLoss NM_006305 54 geneB_no_transcripts SJBALL020704_D1 PIM1 chr6 37139265 + coding BRD1 chr22 50169808 - coding > 0 9 63 265 0.526 0.000 0 300 0.002 0.037 68 70 GGAGAGCTCAAGCTCATCGACTTCGGTTCGGGTGCGCTGCTCAAGGACACGGTCTACACCGACTTCGACGAAGTCGGCCAGAGCAGCATGTGGATCTCCACTGATGCCGCCGCCTCGGTGCTGGAGCCTCTGAAGGTGGTGTGGGCCAAGTGCAGCGGCTACCCCTCCTACCCGGCACTGATCATCGACCCCAAGATGCCCCGTGTGCCTGGCCACCACAACGGCGTCACCATCCCGGCCCCACCCCTGGACGTGCTGAAGATTGGGGAGCACATGCAGACCAAGTCTGATGAGAAGCTGTTCCTCGTTCTTTTTTTTGATAATAAGAGAAGTTG CTX 74.07 LQ 3 Fusion 1,1 NM_001243186,NM_002648 294,203 4,4 perfect,perfect ,605 22,22 68,68 NM_014577,NM_014577 910,910 10,10 tuple,tuple 2729,2729 3177,3177 23,23 69,69 GELKLIDFGSGALLKDTVYTDFDEVGQSSMWISTDAAASVLEPLKVVWAKCSGYPSYPALIIDPKMPRVPGHHNGVTIPAPPLDVLKIGEHMQTKSDEKLFLVLFFDNKRS,GELKLIDFGSGALLKDTVYTDFDEVGQSSMWISTDAAASVLEPLKVVWAKCSGYPSYPALIIDPKMPRVPGHHNGVTIPAPPLDVLKIGEHMQTKSDEKLFLVLFFDNKRS PIM1:NM_001243186[1,4]-BRD1:NM_014577[10,12];PIM1:NM_002648[1,4]-BRD1:NM_014577[10,12] geneB_transcripts=NM_014577 , 0,0 SJBALL020704_D1 MAFK chr7 1570534 + 5utr FTSJ2 chr7 2279314 - coding > 4 2 89 45 0.000 0.000 99 65 0.161 0.142 90 87 CGAGGGGAGCGCGACAGTGAGCGCCGGCGCGAGGACAGCGCGTGCCCGCGAGGAGCCGCCGCGCGCCCGCGCCCTCCGCGCGACGCCAGCGTCAAGGGTTCCACACTGTTGGGAGTCGCTGCAAGAATCGG ITX 73.13 LQ 0 NLoss 0,0 NM_002360, , 1, , , , , NM_013393,NM_013393 13,13 2, tuple,tuple 37,37 741,741 28, , RGARQ*APARGQRVPARSRRAPAPSARRQRQGFHTVGSRCKNR, MAFK:NM_002360[1,1]-FTSJ2:NM_013393[2,3]; geneB_transcripts=NM_013393 , 2, SJBALL020704_D1 RAB40B chr17 80656331 - coding RARA chr17 38504567 + coding > 2 0 81 55 0.000 0.000 66 0 0.077 0.019 91 96 AGTCCTTGTTGGTGGGGGACAGCGACGTGGGAAAGGACTAGAGCCTGGGGAGCCTGCAGGATGGCGCGGCCGAGTCCCCGTACGGCCACCCGGCGGCCATTGAGACCCAGAGCAGCAGTTCTGAAGAGATAGTGCCCAGCCCTCCCTCGC ITX 68.91 LQ 3 Fusion 1,1,1 NM_006822,NM_006822,NM_006822 46,48,46 1,1,1 tuple,tuple,tuple 142,142,142 28,30,28 88,94,88 NM_000964,NM_001024809,NM_001145301 60,55,60 3,2,3 blat,blat,blat 179,164,179 1389,1374,1389 29,32,29 89,98,89 SLLVGDSDVGKD*SLGSLQDGAAESPYGHPAAIETQSSSSEEIVPSPPS,SLLVGDSDVGKD*SLGSLQDGAAESPYGHPAAIETQSSSSEEIVPSPPS,SLLVGDSDVGKD*SLGSLQDGAAESPYGHPAAIETQSSSSEEIVPSPPS RAB40B:NM_006822[1,1]-RARA:NM_000964[3,9];RAB40B:NM_006822[1,1]-RARA:NM_001024809[2,8];RAB40B:NM_006822[1,1]-RARA:NM_001145301[3,9] geneB_breakpoint_not_mapped_to_CDS=NM_001145302 geneB_transcripts=NM_000964,NM_001024809,NM_001145301,NM_001145302;geneB_intronic=NM_001145302 ,A, 2,2,2 SJBALL020704_D1 CBFA2T3 chr16 88945678 - coding MAEA chr4 1326543 + coding > 0 1 160 195 0.000 0.000 0 51 0.010 0.080 160 158 CATGTCGGAGCTGCAGAAAGCCGTGTCGGACGCGGAGCGCAAAGCGCACGAGCTCATCACCACGGAGCGTGCCAAGATGGAGCGGGCCCTGGCCGAGGCGAAGCGGCAGGCCTCCGAGGACGCCCTGACGGTCATCAACCAGCAGGAGGACTCCAGCGAGACATGCAAGAAAGCACTTCAGCCAAGCAGAAGGGAGCCAGCTGGACGAGGTGCGCCAGGCCATGGGCATGCTGGCCTTCCCGCCCGACACGCACATCTCCCCGTACAAGGACCTTCTGGACCCTGCACGGTGGCGGATGCTGATCCAGCAGTTCCGGTACGACAACTACCGACTACACCAGCTGGGAAACAAT CTX 54.79 LQ 3 Fusion 0,0,0,0,1,1,0,0,0,0,0,0 NM_005187,NM_175931,NM_005187,NM_175931,NM_005187,NM_175931,NM_005187,NM_175931,NM_005187,NM_175931,NM_005187,NM_175931 ,,,,555,469,,,,,, 11,10,11,10,11,10,11,10,11,10,11,10 ,,,,perfect,perfect,,,,,, 1662,1404,1662,1404,1662,1404,1662,1404,1662,1404,1662,1404 ,,,,52,52,,,,,, ,,,,159,159,,,,,, NM_001017405,NM_001017405,NM_001297430,NM_001297430,NM_001297431,NM_001297431,NM_001297432,NM_001297432,NM_001297433,NM_001297433,NM_005882,NM_005882 219,219,151,151,153,153,218,218,171,171,178,178 6,6,5,5,4,4,6,6,6,6,5,5 tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 657,657,453,453,457,457,654,654,513,513,534,534 1191,1191,987,987,987,987,1188,1188,1047,1047,1068,1068 52,52,52,52,53,53,52,52,52,52,52,52 ,,,,160,160,,,,,, CRSCRKPCRTRSAKRTSSSPRSVPRWSGPWPRRSGRPPRTP*RSSTSRRTPARHARKHFSQAEGSQLDEVRQAMGMLAFPPDTHISPYKDLLDPARWRMLIQQFRYDNYRLHQLGNN,CRSCRKPCRTRSAKRTSSSPRSVPRWSGPWPRRSGRPPRTP*RSSTSRRTPARHARKHFSQAEGSQLDEVRQAMGMLAFPPDTHISPYKDLLDPARWRMLIQQFRYDNYRLHQLGNN,CRSCRKPCRTRSAKRTSSSPRSVPRWSGPWPRRSGRPPRTP*RSSTSRRTPARHARKHFSQAEGSQLDEVRQAMGMLAFPPDTHISPYKDLLDPARWRMLIQQFRYDNYRLHQLGNN,CRSCRKPCRTRSAKRTSSSPRSVPRWSGPWPRRSGRPPRTP*RSSTSRRTPARHARKHFSQAEGSQLDEVRQAMGMLAFPPDTHISPYKDLLDPARWRMLIQQFRYDNYRLHQLGNN,MSELQKAVSDAERKAHELITTERAKMERALAEAKRQASEDALTVINQQEDSSETCKKALQPSRREPAGRGAPGHGHAGLPARHAHLPVQGPSGPCTVADADPAVPVRQLPTTPAGKQ,MSELQKAVSDAERKAHELITTERAKMERALAEAKRQASEDALTVINQQEDSSETCKKALQPSRREPAGRGAPGHGHAGLPARHAHLPVQGPSGPCTVADADPAVPVRQLPTTPAGKQ,CRSCRKPCRTRSAKRTSSSPRSVPRWSGPWPRRSGRPPRTP*RSSTSRRTPARHARKHFSQAEGSQLDEVRQAMGMLAFPPDTHISPYKDLLDPARWRMLIQQFRYDNYRLHQLGNN,CRSCRKPCRTRSAKRTSSSPRSVPRWSGPWPRRSGRPPRTP*RSSTSRRTPARHARKHFSQAEGSQLDEVRQAMGMLAFPPDTHISPYKDLLDPARWRMLIQQFRYDNYRLHQLGNN,CRSCRKPCRTRSAKRTSSSPRSVPRWSGPWPRRSGRPPRTP*RSSTSRRTPARHARKHFSQAEGSQLDEVRQAMGMLAFPPDTHISPYKDLLDPARWRMLIQQFRYDNYRLHQLGNN,CRSCRKPCRTRSAKRTSSSPRSVPRWSGPWPRRSGRPPRTP*RSSTSRRTPARHARKHFSQAEGSQLDEVRQAMGMLAFPPDTHISPYKDLLDPARWRMLIQQFRYDNYRLHQLGNN,CRSCRKPCRTRSAKRTSSSPRSVPRWSGPWPRRSGRPPRTP*RSSTSRRTPARHARKHFSQAEGSQLDEVRQAMGMLAFPPDTHISPYKDLLDPARWRMLIQQFRYDNYRLHQLGNN,CRSCRKPCRTRSAKRTSSSPRSVPRWSGPWPRRSGRPPRTP*RSSTSRRTPARHARKHFSQAEGSQLDEVRQAMGMLAFPPDTHISPYKDLLDPARWRMLIQQFRYDNYRLHQLGNN CBFA2T3:NM_005187[1,11]-MAEA:NM_001017405[6,9];CBFA2T3:NM_175931[1,10]-MAEA:NM_001017405[6,9];CBFA2T3:NM_005187[1,11]-MAEA:NM_001297430[5,8];CBFA2T3:NM_175931[1,10]-MAEA:NM_001297430[5,8];CBFA2T3:NM_005187[1,11]-MAEA:NM_001297431[4,7];CBFA2T3:NM_175931[1,10]-MAEA:NM_001297431[4,7];CBFA2T3:NM_005187[1,11]-MAEA:NM_001297432[6,9];CBFA2T3:NM_175931[1,10]-MAEA:NM_001297432[6,9];CBFA2T3:NM_005187[1,11]-MAEA:NM_001297433[6,9];CBFA2T3:NM_175931[1,10]-MAEA:NM_001297433[6,9];CBFA2T3:NM_005187[1,11]-MAEA:NM_005882[5,8];CBFA2T3:NM_175931[1,10]-MAEA:NM_005882[5,8] geneB_transcripts=NM_001017405,NM_001297430,NM_001297431,NM_001297432,NM_001297433,NM_005882 ,,,,,,,,,,, 2,2,2,2,1,1,2,2,2,2,2,2 SJBALL020704_D1 IFITM2 chr11 311033 - intergenic CTAGE5 chr14 39746137 + coding > 0 1 54 102 0.500 0.867 1 50 0.000 0.125 54 51 CCGAGGGGGAGAGGGCGCTTCCTCCGCGTCCATCGCCCTTGCCGCCCCTGGGGTTGTGGCAGCACTGCCTGAAGGTATGAGACCAGATTCTAATCTTTATGGTTTTCCATGGGAATTGGTGATATGTGCAGCTGTTGTTGGATTTTTTGCTGT CTX 50.00 LQ 2 upTSS 2,3,3,3,3,2 ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, NM_001247988,NM_001247989,NM_005930,NM_203354,NM_203355,NM_203356 -7,22,22,10,22,-7 ,,,,, tuple,tuple,tuple,tuple,tuple,tuple ,64,64,28,64, 2199,2430,2415,2379,2286,2328 ,,,,, ,,,,, ,,,,, ;;;;; geneA_no_transcript_IDs_found;geneB_no_inframe_contig_found geneB_transcripts=NM_001247988,NM_001247989,NM_001247990,NM_005930,NM_203354,NM_203355,NM_203356;geneb_utr_codons=8;geneb_utr_codons=13 ,,,,, ,,,,, SJBALL020704_D1 IFITM3 chr11 318748 + intergenic CTAGE5 chr14 39746137 + coding > 0 1 54 102 0.500 0.867 0 50 0.000 0.125 54 51 CCGAGGGGGAGAGGGCGCTTCCTCCGCGTCCATCGCCCTTGCCGCCCCTGGGGTTGTGGCAGCACTGCCTGAAGGTATGAGACCAGATTCTAATCTTTATGGTTTTCCATGGGAATTGGTGATATGTGCAGCTGTTGTTGGATTTTTTGCTGT CTX 50.00 LQ 2 upTSS 2,3,3,3,3,2 ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, NM_001247988,NM_001247989,NM_005930,NM_203354,NM_203355,NM_203356 -7,22,22,10,22,-7 ,,,,, tuple,tuple,tuple,tuple,tuple,tuple ,64,64,28,64, 2199,2430,2415,2379,2286,2328 ,,,,, ,,,,, ,,,,, ;;;;; geneA_no_transcript_IDs_found;geneB_no_inframe_contig_found geneB_transcripts=NM_001247988,NM_001247989,NM_001247990,NM_005930,NM_203354,NM_203355,NM_203356;geneb_utr_codons=8;geneb_utr_codons=13 ,,,,, ,,,,, SJBALL020704_D1 METRNL chr17 81043200 + coding OXLD1 chr17 79632615 - coding > 17 1 36 119 0.000 0.000 34 34 0.214 0.040 36 35 GAGGCACAGGGCGTCGGACCTGCACGAGCTGTCTGGGGGCTCGCCGGTTCTCCAGCCCGGACTGCTGCCAGAGTCTTCCTGGAGGTGGCAGCTTTCTTCAAAGGCACCATCCCGGAGCGCAAGCCCCTGATGGGCGCAGAAAATTCGGGACAGA ITX 34.01 LQ 0 Fusion 0,0 NM_001004431, , 2, , 556, , , NM_001039842,NM_001039842 21,21 2, tuple,tuple 61,61 444,444 11, , GTGRRTCTSCLGARRFSSPDCCQSLPGGGSFLQRHHPGAQAPDGRRKFGT, METRNL:NM_001004431[1,2]-OXLD1:NM_001039842[2,2]; geneB_transcripts=NM_001039842 , 2, SJBALL020704_D1 DTWD2 chr5 118309535 + intron IRX4 chr5 1882863 - 5utr > 2 9 73 66 0.869 0.000 61 186 0.026 0.152 74 72 CTGCATCGGATCACCGGCGTGCCCCACCATGTCAGACGCAGCCGTAGACACCAGCTCCGAAATCACCACCAAGCGCCTAGAAGCCTGCAGCTCCGGAGCAGTGGCCGCGCCACGACGGCCCCAGCGCGCAGAACCCTG ITX 33.48 LQ 0 other 0,0,0,0,0,0,0,0,0,0 NM_173666,NM_173666,NM_173666,NM_173666,NM_173666,,,,, ,,,,,,,,, 1,1,1,1,1,,,,, ,,,,,,,,, ,,,,,,,,, ,,,,,,,,, ,,,,,,,,, NM_001278632,NM_001278633,NM_001278634,NM_001278635,NM_016358,NM_001278632,NM_001278633,NM_001278634,NM_001278635,NM_016358 -33,-33,-33,-33,-33,-33,-33,-33,-33,-33 2,2,2,2,1,,,,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple ,,,,,,,,, 1560,1638,1560,1638,1560,1560,1638,1560,1638,1560 26,26,26,26,26,,,,, ,,,,,,,,, ASDHRRAPPCQTQP*TPAPKSPPSA*KPAAPEQWPRHDGPSAQNP,ASDHRRAPPCQTQP*TPAPKSPPSA*KPAAPEQWPRHDGPSAQNP,ASDHRRAPPCQTQP*TPAPKSPPSA*KPAAPEQWPRHDGPSAQNP,ASDHRRAPPCQTQP*TPAPKSPPSA*KPAAPEQWPRHDGPSAQNP,ASDHRRAPPCQTQP*TPAPKSPPSA*KPAAPEQWPRHDGPSAQNP,,,,, DTWD2:NM_173666[1,1]-IRX4:NM_001278632[2,6];DTWD2:NM_173666[1,1]-IRX4:NM_001278633[2,7];DTWD2:NM_173666[1,1]-IRX4:NM_001278634[2,6];DTWD2:NM_173666[1,1]-IRX4:NM_001278635[2,7];DTWD2:NM_173666[1,1]-IRX4:NM_016358[1,5];;;;; geneB_transcripts=NM_001278632,NM_001278633,NM_001278634,NM_001278635,NM_016358;geneb_utr_codons=13 ,,,,,,,,, 2,2,2,2,2,,,,, SJBALL020704_D1 ACAP2 chr3 195163524 - coding PICALM chr11 85742656 - coding > 1 0 149 222 0.000 0.000 51 0 0.044 0.000 150 147 CGCGGCCGTGCGCCCGCCGTAGCCGTCTGCGTCCCAGCGCGGCCGCTCCCGCGGCCCCCTCGGCTTTGCCAGCGCCGCCTGCGAGGCGGAGGCAGGATGAAGATGACTGTGGATTTCGAGGAGTGTCTGAAGGACTCGCCCCGCTTCAGACTTAATTCAGTGCACAAATGAGATGAATGTGAACATCCCACAGTTGGCAGACAGTTTATTTGAAAGAACTACTAATAGTAGTTGGGTGGTGGTCTTCAAATCTCTCATTACAACTCATCATTTGATGGTGTATGGAAATGAGCGTTTTATTCAGTATTTGGCTTCAAGAAACACGTTGTTTAACTTAAGCAATTTTTTGGATAAAAGTGGATTGCAAG CTX 33.11 LQ 2 upTSS 0,0,0,0,3,3,2,3 NM_012287,NM_012287,NM_012287,NM_012287,,,, ,,,,,,, 1,1,1,1,,,, ,,,,,,, 53,53,53,53,,,, ,,,,,,, ,,,,,,, NM_001008660,NM_001206946,NM_001206947,NM_007166,NM_001008660,NM_001206946,NM_001206947,NM_007166 44,44,-7,44,44,44,-7,44 2,2,2,2,,,, blat,blat,tuple,blat,blat,blat,tuple,blat 131,131,,131,131,131,,131 1833,1938,1656,1959,1833,1938,1656,1959 50,50,52,50,,,, ,,,,,,, AAVRPP*PSASQRGRSRGPLGFASAACEAEAG*R*LWISRSV*RTRPASDLIQCTNEMNVNIPQLADSLFERTTNSSWVVVFKSLITTHHLMVYGNERFIQYLASRNTLFNLSNFLDKSGLQ,AAVRPP*PSASQRGRSRGPLGFASAACEAEAG*R*LWISRSV*RTRPASDLIQCTNEMNVNIPQLADSLFERTTNSSWVVVFKSLITTHHLMVYGNERFIQYLASRNTLFNLSNFLDKSGLQ,AAVRPP*PSASQRGRSRGPLGFASAACEAEAG*R*LWISRSV*RTRPASDLIQCTNEMNVNIPQLADSLFERTTNSSWVVVFKSLITTHHLMVYGNERFIQYLASRNTLFNLSNFLDKSGLQ,AAVRPP*PSASQRGRSRGPLGFASAACEAEAG*R*LWISRSV*RTRPASDLIQCTNEMNVNIPQLADSLFERTTNSSWVVVFKSLITTHHLMVYGNERFIQYLASRNTLFNLSNFLDKSGLQ,,,, ACAP2:NM_012287[1,1]-PICALM:NM_001008660[2,20];ACAP2:NM_012287[1,1]-PICALM:NM_001206946[2,20];ACAP2:NM_012287[1,1]-PICALM:NM_001206947[2,19];ACAP2:NM_012287[1,1]-PICALM:NM_007166[2,20];;;; geneB_transcripts=NM_001008660,NM_001206946,NM_001206947,NM_007166;geneb_utr_codons=8 ,,,,,,, 1,1,1,1,,,, SJBALL020704_D1 SNX8 chr7 2296509 - coding ASPSCR1 chr17 79966911 + coding > 2 0 173 50 0.000 0.000 59 0 0.036 0.000 174 172 AGCTGGAGTCCCGCATCGTGGAGCAGGAGAACGCGATTCAGACGATGGAGCTGCGGAACTACTTCTCCCTGTACTGCCTGCACCAGGAGACGCAGCTCATCCACGTCTACCTGCCCCTCACCTCCCACATCCTCCGCGCCTTCGTCAACTCTCAGATCCAAGGGCACAAGGAGCCCGTGGACCGGGAGCCCGTGGACCGGGAGCCGGTGGTGTGCCACCCC CTX 29.46 LQ 2 Fusion 1,1 NM_013321,NM_013321 429,429 10,10 perfect,perfect 1284,1284 56,56 172,172 NM_001251888,NM_024083 312,312 8,8 tuple,tuple 934,934 1944,1662 57,57 173,173 LESRIVEQENAIQTMELRNYFSLYCLHQETQLIHVYLPLTSHILRAFVNSQIQGHKEPVDREPVDREPVVCHP,LESRIVEQENAIQTMELRNYFSLYCLHQETQLIHVYLPLTSHILRAFVNSQIQGHKEPVDREPVDREPVVCHP SNX8:NM_013321[1,10]-ASPSCR1:NM_001251888[8,17];SNX8:NM_013321[1,10]-ASPSCR1:NM_024083[8,16] geneB_transcripts=NM_001251888,NM_024083;reannotated geneA from SNX8,MIR6836 to SNX8 , 2,2 SJBALL020704_D1 CDK6 chr7 92282873 + intron NRIP1 chr21 16340840 - 5utr > 6 0 202 81 0.000 0.000 82 0 0.042 0.000 203 210 CTGACACAGAAGAACGTACTCTTTATCTGAGTATCCTGCAGGGCAGATGTGAAACCTGGAACTACTGTAACCGCTTTGCCAATGAATGAAAACAGCCTTTGAAGATGCCAAGACATAGAAAAGGGAATGTTAGAGAAATGGAGCTGCAGCTTCTGGATTAAGCCAACCCTGATGCTCACCTATCTCTGGAATCACCGTTTATATCTGGAATATTTGCATTTAATGGGGAACAAAAGATGAAGAAGGAAAAGGAATATATTCACTAAGGATTCTATCTGCTTACTGCTACATTCTGTC CTX 24.60 LQ 3 other 0,0,0 NM_001145306,NM_001259, ,, 5,5, ,, ,, ,, ,, NM_003489,NM_003489,NM_003489 -108,-108,-108 4,4, tuple,tuple,tuple ,, 3477,3477,3477 72,72, ,, DTEERTLYLSILQGRCETWNYCNRFANE*KQPLKMPRHRKGNVREMELQLLD*ANPDAHLSLESPFISGIFAFNGEQKMKKEKEYIH*GFYLLTATFC,DTEERTLYLSILQGRCETWNYCNRFANE*KQPLKMPRHRKGNVREMELQLLD*ANPDAHLSLESPFISGIFAFNGEQKMKKEKEYIH*GFYLLTATFC, CDK6:NM_001145306[1,5]-NRIP1:NM_003489[4,4];CDK6:NM_001259[1,5]-NRIP1:NM_003489[4,4]; geneB_transcripts=NM_003489;geneb_utr_codons=13 ,, 2,2, SJBALL020704_D1 RUNX1 chr21 36265222 - coding RNF111 chr15 59323002 + 5utr > 2 0 157 56 0.006 0.000 66 0 0.050 0.000 162 161 GCGTGGTAAAAGAAATCATTGAGTCCCCCGCCTTCAGAAGAGGGTGCATTTTCAGGAGGAAGCGATGGCTTCAGACAGCATATTTGAGTCATTTCCTTCGTACCCACAGTGCTTCATGAGAGAATGCATACTTGGAATGAATCCTTCTAGAGACGTCCACGGCTTTCCTTAAAGTTTCCCATGTCTCAATGGACTCCTGAATATAACGAGCTCTAC CTX 24.48 LQ 3 CLoss 0,0,0,0,3,3,3,3 NM_001754,NM_001754,NM_001754,NM_001754,,,, ,,,,,,, 3,3,3,3,,,, ,,,,,,, 97,97,97,97,,,, ,,,,,,, ,,,,,,, NM_001270528,NM_001270529,NM_001270530,NM_017610,NM_001270528,NM_001270529,NM_001270530,NM_017610 -6,-6,-6,-6,-6,-6,-6,-6 2,2,2,2,,,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple ,,,,,,, 2988,2958,2985,2961,2988,2958,2985,2961 56,56,56,56,,,, ,,,,,,, AW*KKSLSPPPSEEGAFSGGSDGFRQHI*VISFVPTVLHERMHTWNESF*RRPRLSLKFPMSQWTPEYNELY,AW*KKSLSPPPSEEGAFSGGSDGFRQHI*VISFVPTVLHERMHTWNESF*RRPRLSLKFPMSQWTPEYNELY,AW*KKSLSPPPSEEGAFSGGSDGFRQHI*VISFVPTVLHERMHTWNESF*RRPRLSLKFPMSQWTPEYNELY,AW*KKSLSPPPSEEGAFSGGSDGFRQHI*VISFVPTVLHERMHTWNESF*RRPRLSLKFPMSQWTPEYNELY,,,, RUNX1:NM_001754[1,3]-RNF111:NM_001270528[2,14];RUNX1:NM_001754[1,3]-RNF111:NM_001270529[2,14];RUNX1:NM_001754[1,3]-RNF111:NM_001270530[2,14];RUNX1:NM_001754[1,3]-RNF111:NM_017610[2,14];;;; geneB_transcripts=NM_001270528,NM_001270529,NM_001270530,NM_017610;geneb_utr_codons=7 ,,,,,,, 0,0,0,0,,,, SJBALL020704_D1 LRRFIP1 chr2 238536384 + coding NA chr13 82264246 + intergenic > 6 1 173 63 0.000 0.898 227 15 0.176 0.000 174 171 CGGGGCCGGGGCCGGGCCGGGGCGGCGCGAGCGGCTGGAGCAACGGGCCCCGCGGCAGCTGCGGGCGACGCGGTCGATGGACATGGGCACCCAGGGATCGGGGCGCAAGCGGCTCCCCAACCGGGAGCGGCTCACGGCGGAGGACGACGCGCTCAACCAGATCGCGCGGGAGGACTTAAAGGAGAAGAAGGAAGTTGTGGAAGAGGCAGAAAATGGAAGAGACGCCCCTGCTA CTX 23.25 LQ 1 CLoss NM_001137550 96 geneB_no_transcripts SJBALL020704_D1 PTCH1 chr9 98268684 - coding NKIRAS1 chr3 23939493 + intron > 0 1 54 149 0.000 0.000 0 47 0.034 0.067 55 48 ATTAAAAGCAGCGAACCTCGAGACCAACGTGGAGGAGCTGTGGGTGGAAGATAAGGAAACTGAAGCAGAAAAGCTGAGAAGCAAAGCCAAGATTTAAGTATCTAATAAATGGTTAAAAAGAGTTTGGTACGTACCATGGAATACTACTCACCAAGAAAAAGAAATGAACTACTGATCCATGCAGTGACTTGGATGAA CTX 22.20 LQ 3 CLoss ,,,,,, NM_000264,NM_001083602,NM_001083603,NM_001083604,NM_001083605,NM_001083606,NM_001083607 ,,,,,, ,,,,,, ,,,,,, 394,196,391,,,, ,,,,,, ,,,,,, NM_020345,NM_020345,NM_020345,NM_020345,NM_020345,NM_020345,NM_020345 ,,,,,, ,,,,,, ,,,,,, ,,,,,, ,,,,,, ,,,,,, ,,,,,, ,,,,,, ;;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_020345;geneB_transcript_strand_disagree=NM_020345 ,,,,,, ,,,,,, SJBALL020704_D1 METRNL chr17 81043199 + coding MKNK2 chr19 2043582 - coding > 4 1 85 43 0.000 0.000 116 84 0.214 0.032 86 85 CAGCAGGATATCGGCCGGAGGACCACAGGCTTCCAGTACGAGCTGGTTAGGAGGCACAGGGCGTCGGACCTGCACGAGCTGTCTGATCATTGAGAAGCAGCCAGGCCACATTCGGAGCAGGGTTTTC CTX 21.00 LQ 0 Fusion 0,0,0,0 NM_001004431,NM_001004431,, ,,, 2,2,, ,,, 556,556,, ,,, ,,, NM_017572,NM_199054,NM_017572,NM_199054 114,114,114,114 6,6,, tuple,tuple,tuple,tuple 340,340,340,340 1245,1398,1245,1398 28,28,, ,,, SRISAGGPQASSTSWLGGTGRRTCTSCLIIEKQPGHIRSRVF,SRISAGGPQASSTSWLGGTGRRTCTSCLIIEKQPGHIRSRVF,, METRNL:NM_001004431[1,2]-MKNK2:NM_017572[6,14];METRNL:NM_001004431[1,2]-MKNK2:NM_199054[6,14];; geneB_transcripts=NM_017572,NM_199054 ,,, 1,1,, SJBALL020704_D1 FOXO1 chr13 41239720 - coding ZMIZ1 chr10 80961339 + 5utr > 1 0 144 54 0.007 0.000 51 0 0.053 0.000 145 143 CTGTCCTACGCCGACCTCATCACCAAGGCCATCGAGAGCTCGGCGGAGAAGCGGCTCACGCTGTCGCAGATCTACGAGTGGATGGTCAAGAGCGTGCCCTACTTCAAGGATAAGGGTGACAGCAACAGCTCGGCGGGCTGGAAGGCTGGACAACGTTCATGGCTCTCGGGTAGAACCTAGTGAAACGGCCAGAATG CTX 20.01 LQ 3 CLoss 0,0 NM_002015, , 1, , 630, , , NM_020338,NM_020338 -16,-16 5, tuple,tuple , 3204,3204 50, , CPTPTSSPRPSRARRRSGSRCRRSTSGWSRACPTSRIRVTATARRAGRLDNVHGSRVEPSETARM, FOXO1:NM_002015[1,1]-ZMIZ1:NM_020338[5,25]; geneB_transcripts=NM_020338;geneb_utr_codons=13 , 1, SJBALL020704_D1 SLC7A5 chr16 87885332 - coding CBFA2T3 chr16 88958894 - coding > 2 5 42 207 0.023 0.000 14 125 0.085 0.081 42 42 CTGGCCCTGATCATCCTGCTGGGCTTCGTCCAGATCGGGAAGGTGATGAACGGCAGCAGCCACTCACCAACAGCCATCAATGGTGCACCGTGCACACCCAACGGCTTCAGCAATGGCCCGGCCACCTCGTCCACAGCCTCCTTGTCCACACAGCACCTGCCCCCAGCCTGCGGGGCCCGGCAGCTCAGCAAGCTCAAGCGCTTCCTCACCACACTGCAGCAGTTTGGCAGCGACATCTCCCCAGAGATT INS 17.97 LQ 2 Fusion 1,1 NM_003486,NM_003486 222,222 2,2 tuple,tuple 662,662 13,13 41,41 NM_005187,NM_175931 127,41 4,3 blat,blat 380,122 1962,1704 15,15 45,45 LALIILLGFVQIGKVMNGSSHSPTAINGAPCTPNGFSNGPATSSTASLSTQHLPPACGARQLSKLKRFLTTLQQFGSDISPEI,LALIILLGFVQIGKVMNGSSHSPTAINGAPCTPNGFSNGPATSSTASLSTQHLPPACGARQLSKLKRFLTTLQQFGSDISPEI SLC7A5:NM_003486[1,2]-CBFA2T3:NM_005187[4,12];SLC7A5:NM_003486[1,2]-CBFA2T3:NM_175931[3,11] geneB_transcripts=NM_005187,NM_175931;reannotated geneA from SLC7A5,MIR6775 to SLC7A5 V,V 0,0 SJBALL020704_D1 SH3BP2 chr4 2794866 + 5utr NA chr13 82264247 + intergenic > 4 0 101 74 0.000 0.886 154 0 0.186 0.000 102 100 GAGCTGCGGCGGCGGCGGGTCCCGCGGGCGGGAGCGCCTGGCGGCCGAGTCAAGCCGCCGCCTCGACCCAGGGCCCGCGGGCCAGGAGAGCGCTCGGCGGGACTTAAAGGAGAAGAAGGAAGTTGTGGAAGAGGCAGAAAATGGAAGAGACGCCCCTGCTAACGGGAATGCTA CTX 17.59 LQ 0 other NM_001122681 geneB_no_transcripts SJBALL020704_D1 POLRMT chr19 632833 - coding PALM chr19 726141 + coding > 2 7 87 47 0.494 0.000 62 28 0.035 0.124 88 91 GCGGCCCCAGGAGGAGCTCGTCCCCCAGCCCCCAGGAGCAAGACCAAGACCGCAGGAAGGACTGGGGCCACGTGGAGCTGCTGGAGGGGGCCTGGCGGCAGAGACCACGTCCCAGCAGGAGCGGCTGCAGGCCATCG ITX 17.46 LQ 0 Fusion 0,0,0,0 NM_005035,NM_005035,, ,,, 2,2,, ,,, 193,193,, ,,, ,,, NM_001040134,NM_002579,NM_001040134,NM_002579 3,3,3,3 2,2,, blat,blat,blat,blat 9,9,9,9 1032,1164,1032,1164 30,30,, ,,, RPQEELVPQPPGARPRPQEGLGPRGAAGGGLAAETTSQQERLQAI,RPQEELVPQPPGARPRPQEGLGPRGAAGGGLAAETTSQQERLQAI,, POLRMT:NM_005035[1,2]-PALM:NM_001040134[2,8];POLRMT:NM_005035[1,2]-PALM:NM_002579[2,9];; geneB_transcripts=NM_001040134,NM_002579 ,,, 1,1,, SJBALL020704_D1 RLF chr1 40598560 + intergenic ANKLE2 chr12 133331721 - coding > 0 8 47 82 0.539 0.068 1 145 0.000 0.237 50 70 CCACCATCCACGCCAGCCGCACCATGCCGCTCCTAAGCCTGCACAGCCGCGCCGGCGGCGGGAGGCCAAGGTGAAATGACAATGGATGCTCTGTTGGCTCGATTGAAACTTCTGAATCCAGATGACCTTAGAGAAGAAATCGTCAAAGCCGG CTX 14.91 LQ 1 NLoss 3 NM_015114 61 tuple 182 2817 geneA_no_transcript_IDs_found geneB_transcripts=NM_015114 SJBALL020704_D1 LASP1,MIR6779 chr17 37075287 - 3utr SRRT chr7 100485003 + coding > 37 0 84 44 0.000 0.000 296 0 0.160 0.000 91 107 CGATCTCTGGAATGTGTGGGTATGTGAGGGGAGAGAACAGAGGGGCAGGTGAGGCCCACAGGCCAACAGGTCTCCCATTCCAGCCCTGCCCCACGGGCCTCGCCCTCTCTCAGAGGAAGAGGCCCAGAAGATGGGGCGCAAAGACCCAGA CTX 14.74 LQ 0 NLoss 0,0,0,0,0,0,0,0,0,0,0,0 NM_001271608,NM_006148,NM_001271608,NM_006148,NM_001271608,NM_006148,NM_001271608,NM_006148,,,, ,,,,,,,,,,, 6,7,6,7,6,7,6,7,,,, ,,,,,,,,,,, ,,,,,,,,,,, ,,,,,,,,,,, ,,,,,,,,,,, NM_001128852,NM_001128852,NM_001128853,NM_001128853,NM_001128854,NM_001128854,NM_015908,NM_015908,NM_001128852,NM_001128853,NM_001128854,NM_015908 679,679,680,680,679,679,680,680,679,680,679,680 16,16,16,16,16,16,16,16,,,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 2035,2035,2038,2038,2035,2035,2038,2038,2035,2038,2035,2038 2628,2628,2619,2619,2616,2616,2631,2631,2628,2619,2616,2631 35,35,35,35,35,35,35,35,,,, ,,,,,,,,,,, DLWNVWVCEGREQRGR*GPQANRSPIPALPHGPRPLSEEEAQKMGRKDP,DLWNVWVCEGREQRGR*GPQANRSPIPALPHGPRPLSEEEAQKMGRKDP,DLWNVWVCEGREQRGR*GPQANRSPIPALPHGPRPLSEEEAQKMGRKDP,DLWNVWVCEGREQRGR*GPQANRSPIPALPHGPRPLSEEEAQKMGRKDP,DLWNVWVCEGREQRGR*GPQANRSPIPALPHGPRPLSEEEAQKMGRKDP,DLWNVWVCEGREQRGR*GPQANRSPIPALPHGPRPLSEEEAQKMGRKDP,DLWNVWVCEGREQRGR*GPQANRSPIPALPHGPRPLSEEEAQKMGRKDP,DLWNVWVCEGREQRGR*GPQANRSPIPALPHGPRPLSEEEAQKMGRKDP,,,, LASP1:NM_001271608[1,6]-SRRT:NM_001128852[16,20];LASP1:NM_006148[1,7]-SRRT:NM_001128852[16,20];LASP1:NM_001271608[1,6]-SRRT:NM_001128853[16,20];LASP1:NM_006148[1,7]-SRRT:NM_001128853[16,20];LASP1:NM_001271608[1,6]-SRRT:NM_001128854[16,20];LASP1:NM_006148[1,7]-SRRT:NM_001128854[16,20];LASP1:NM_001271608[1,6]-SRRT:NM_015908[16,20];LASP1:NM_006148[1,7]-SRRT:NM_015908[16,20];;;; geneB_transcripts=NM_001128852,NM_001128853,NM_001128854,NM_015908 ,,,,,,,,,,, 1,1,1,1,1,1,1,1,,,, SJBALL020704_D1 NKAIN4 chr20 61878930 - coding RALGDS chr9 135987540 - coding > 2 1 162 50 0.000 0.000 67 8 0.014 0.064 163 162 CGCTCCTGGTGGCGTGAGCGCTGGCCAGGCTGTCTGCATGAGGAGGTGCCAGCAGTGGGCCTCGGGGCCCCCCATGGCCAGGCCCTGGTGTCAGGTGCTGGCTGTGCCCTGGAGCCCAGCTATGTGGAGGCCCTACACAGTTGCCTGCAGATCCTGATCGCGAGCTCCACGCAGGAGATCGGTGAGGAGCTGATCAACGGAGTCATCTACT CTX 11.40 LQ 2 Fusion 1,1,1,1,1 NM_152864,NM_152864,NM_152864,NM_152864,NM_152864 158,158,158,158,158 4,4,4,4,4 perfect,perfect,perfect,perfect,perfect 471,471,471,471,471 53,53,53,53,53 161,161,161,161,161 NM_001042368,NM_001271774,NM_001271775,NM_001271776,NM_006266 7,45,61,62,62 2,2,2,2,2 tuple,tuple,tuple,tuple,tuple 19,133,181,184,184 2580,2658,2742,2709,2745 54,54,54,54,54 162,162,162,162,162 RSWWRERWPGCLHEEVPAVGLGAPHGQALVSGAGCALEPSYVEALHSCLQILIASSTQEIGEELINGVIY,RSWWRERWPGCLHEEVPAVGLGAPHGQALVSGAGCALEPSYVEALHSCLQILIASSTQEIGEELINGVIY,RSWWRERWPGCLHEEVPAVGLGAPHGQALVSGAGCALEPSYVEALHSCLQILIASSTQEIGEELINGVIY,RSWWRERWPGCLHEEVPAVGLGAPHGQALVSGAGCALEPSYVEALHSCLQILIASSTQEIGEELINGVIY,RSWWRERWPGCLHEEVPAVGLGAPHGQALVSGAGCALEPSYVEALHSCLQILIASSTQEIGEELINGVIY NKAIN4:NM_152864[1,4]-RALGDS:NM_001042368[2,18];NKAIN4:NM_152864[1,4]-RALGDS:NM_001271774[2,18];NKAIN4:NM_152864[1,4]-RALGDS:NM_001271775[2,18];NKAIN4:NM_152864[1,4]-RALGDS:NM_001271776[2,18];NKAIN4:NM_152864[1,4]-RALGDS:NM_006266[2,18] geneB_transcripts=NM_001042368,NM_001271774,NM_001271775,NM_001271776,NM_006266 ,,,, 0,0,0,0,0 SJBALL020704_D1 SH3GL1 chr19 4400323 - coding REXO1,MIR1909 chr19 1828632 - coding > 2 7 52 66 0.656 0.029 105 127 0.051 0.130 52 52 GCGGCAGCATGTCGGTGGCGGGGCTGAAGAAGCAGTTCTACAAGGCGAGCCAGGGCTGGGTTACGACCCCTACAACCCTGAGCTGCCCAAGCCCCCCGCGCAGAGGGAGAATGGCACC DEL 8.21 LQ 1 Fusion 0,0,0,0 NM_001199943,NM_001199944,NM_003025, ,,, 1,1,1, ,,, 43,43,43, ,,, ,,, NM_020695,NM_020695,NM_020695,NM_020695 53,53,53,53 2,2,2, tuple,tuple,tuple,tuple 158,158,158,158 3666,3666,3666,3666 17,17,17, ,,, RQHVGGGAEEAVLQGEPGLGYDPYNPELPKPPAQRENGT,RQHVGGGAEEAVLQGEPGLGYDPYNPELPKPPAQRENGT,RQHVGGGAEEAVLQGEPGLGYDPYNPELPKPPAQRENGT, SH3GL1:NM_001199943[1,1]-REXO1:NM_020695[2,16];SH3GL1:NM_001199944[1,1]-REXO1:NM_020695[2,16];SH3GL1:NM_003025[1,1]-REXO1:NM_020695[2,16]; geneB_transcripts=NM_020695 ,,, 1,1,1, SJBALL020704_D1 PNPLA2 chr11 819905 + coding LRP5 chr11 68153783 + coding > 2 0 120 56 0.016 0.000 64 0 0.018 0.000 121 121 GTCGGCGTGGCCTCCTGCCTCCGCGAGCACGCGCCCTTCCTGGTGGCCAACGCCACGCACATCTACGGCGCCTCGGCCGGGGCGCTCACGGCCACGGCGCTGGTCACCGGGGTCTGCCTGGGAGCCGAGGAGGTGCTGCTGCTGGCCCGGCGGACGGACCTACGGAGGATCTCGCT DEL 8.08 LQ 2 Fusion 0,1 NM_020376,NM_020376 ,63 2,2 ,perfect 187,187 ,39 ,119 NM_001291902,NM_002335 -249,339 6,6 tuple,tuple ,1016 3105,4848 43,40 ,120 SAWPPASASTRPSWWPTPRTSTAPRPGRSRPRRWSPGSAWEPRRCCCWPGGRTYGGSR,VGVASCLREHAPFLVANATHIYGASAGALTATALVTGVCLGAEEVLLLARRTDLRRIS PNPLA2:NM_020376[1,2]-LRP5:NM_001291902[6,23];PNPLA2:NM_020376[1,2]-LRP5:NM_002335[6,23] geneB_transcripts=NM_001291902,NM_002335;geneb_utr_codons=13 , 1,0 SJBALL020704_D1 KDM2A chr11 66888831 + coding TCF12 chr15 57523349 + coding > 1 2 40 87 0.000 0.000 21 49 0.030 0.013 40 38 AACCCGAAGAAGAAAGGATTCGTTACAGCCAGAGATTGGTATATGCACCATCCCCAAATTCAGATGATTTCAACCGTGAATCTCCTAGTTATCCATCTCCTAAGCCACCAACCAGTATGTCCGCTG CTX 7.88 LQ 2 Fusion 1,1,1,1,1 NM_012308,NM_012308,NM_012308,NM_012308,NM_012308 15,15,15,15,15 2,2,2,2,2 perfect,perfect,perfect,perfect,perfect 42,42,42,42,42 11,11,11,11,11 37,37,37,37,37 NM_003205,NM_207036,NM_207037,NM_207038,NM_207040 194,194,194,194,24 9,9,9,9,2 tuple,tuple,tuple,tuple,tuple 580,580,580,580,70 2049,2121,2121,2049,1539 12,12,12,12,12 38,38,38,38,38 PEEERIRYSQRLVYAPSPNSDDFNRESPSYPSPKPPTSMSA,PEEERIRYSQRLVYAPSPNSDDFNRESPSYPSPKPPTSMSA,PEEERIRYSQRLVYAPSPNSDDFNRESPSYPSPKPPTSMSA,PEEERIRYSQRLVYAPSPNSDDFNRESPSYPSPKPPTSMSA,PEEERIRYSQRLVYAPSPNSDDFNRESPSYPSPKPPTSMSA KDM2A:NM_012308[1,2]-TCF12:NM_003205[9,20];KDM2A:NM_012308[1,2]-TCF12:NM_207036[9,21];KDM2A:NM_012308[1,2]-TCF12:NM_207037[9,21];KDM2A:NM_012308[1,2]-TCF12:NM_207038[9,20];KDM2A:NM_012308[1,2]-TCF12:NM_207040[2,13] geneB_transcripts=NM_003205,NM_207036,NM_207037,NM_207038,NM_207040 ,,,, 2,2,2,2,2 SJBALL020704_D1 CPSF6 chr12 69633374 - 5utr TCF3 chr19 1621187 - coding > 2 0 100 46 0.000 0.000 58 0 0.500 0.000 101 97 TCGCCGACATCCGCGTAAATGTCTATGTGGTCCACGCCGTCCGCCATCTTCCTTCAGCCTCGGCCGCCGCCGCCGCCGCCGCCTCCTGCAGGTCTGCCCGAGGGACCACAGCTGGCAGCTCCGGGGATGCCCTCGGCAAAGC CTX 7.85 LQ 3 NLoss 0,0,0,0,0,0 NM_001300947,NM_007007,NM_001300947,NM_007007,, ,,,,, 1,1,1,1,, ,,,,, ,,,,, ,,,,, ,,,,, NM_001136139,NM_001136139,NM_003200,NM_003200,NM_001136139,NM_003200 320,320,320,320,320,320 11,11,12,12,, blat,blat,blat,blat,blat,blat 959,959,959,959,959,959 1956,1956,1965,1965,1956,1965 32,32,32,32,, ,,,,, ADIRVNVYVVHAVRHLPSASAAAAAAASCRSARGTTAGSSGDALGK,ADIRVNVYVVHAVRHLPSASAAAAAAASCRSARGTTAGSSGDALGK,ADIRVNVYVVHAVRHLPSASAAAAAAASCRSARGTTAGSSGDALGK,ADIRVNVYVVHAVRHLPSASAAAAAAASCRSARGTTAGSSGDALGK,, CPSF6:NM_001300947[1,1]-TCF3:NM_001136139[11,19];CPSF6:NM_007007[1,1]-TCF3:NM_001136139[11,19];CPSF6:NM_001300947[1,1]-TCF3:NM_003200[12,19];CPSF6:NM_007007[1,1]-TCF3:NM_003200[12,19];; geneB_transcripts=NM_001136139,NM_003200 ,,,,, 2,2,2,2,, SJBALL020704_D1 MSTN chr2 190944749 + intergenic LPP chr3 188123898 + 5utr > 0 1 45 133 0.000 0.000 0 42 0.080 0.103 45 43 GACCAGGTGAAATAGATATCCTGAGCACACCTGTTTGATTCCAAGATTCCAACAATGTCTCACCCATCTTGGCTGCCACCCAAAAGCACTGGTGAGCCCCTCGGCCATGTGCCTGCACGGATGGAGACCACCCATTCCTTTGGGAACCCCAGCATTTCAGTGTCTACACAACAGCCG CTX 6.90 LQ 2 upTSS 2,2,2 ,, ,, ,, ,, ,, ,, ,, NM_001167671,NM_001167672,NM_005578 -2,-2,-2 ,, tuple,tuple,tuple ,, 1839,1398,1839 ,, ,, ,, ;; geneA_no_transcript_IDs_found geneB_transcripts=NM_001167671,NM_001167672,NM_005578;geneb_utr_codons=3 ,, ,, SJBALL020704_D1 KCTD5 chr16 2732803 + coding SKI chr1 2234415 + coding > 1 7 147 46 0.000 0.000 41 94 0.083 0.000 148 144 CCAGCGCCCTGGCAGCGTGTCCAAGTGGGTCCGACTCAACGTCGGCGGCACCTACTTCCTCACCACTCGGCAGACCCTGTGCCGGGACCCGAAATCCTTCCTGTACCGCTTATGCCAGGCCGATCCCGACCTGGACTCAGACAAGGTCTCCTCTGAGCCTCCGGCCTCCATAAGACCCAAAACAGATGA CTX 6.09 LQ 2 Fusion 1 NM_018992 85 1 perfect 252 47 144 NM_003036 324 2 tuple 970 2187 48 145 QRPGSVSKWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKVSSEPPASIRPKTD KCTD5:NM_018992[1,1]-SKI:NM_003036[2,7] geneB_transcripts=NM_003036 1 SJBALL020704_D1 WNT9A chr1 228135496 - coding PLEKHO1 chr1 150123101 + coding > 1 3 34 71 0.056 0.000 6 97 0.300 0.056 34 34 CTCGCCGCGCTGCGCCCTTCGGCCGCCTACTTCGGGGACCTCAGGATGGAAACCAGCAGCCTGCACCGCCCGAGAAGGTCGGCTGGGTCCGGAAATTCTGCGGGA ITX 6.01 LQ 0 Fusion 0,0 NM_003395, , 1, , 93, , , NM_016274,NM_016274 11,11 2, tuple,tuple 31,31 1230,1230 11, , RRAAPFGRLLRGPQDGNQQPAPPEKVGWVRKFCG, WNT9A:NM_003395[1,1]-PLEKHO1:NM_016274[2,6]; geneB_transcripts=NM_016274 , 2, SJBALL020704_D1 MSI2 chr17 55339553 + coding AUTS2 chr7 70227854 + coding > 0 1 153 120 0.000 0.000 0 47 0.011 0.024 153 151 AGAGATCCCACTACGAAACGCTCCAGAGGCTTCGGTTTCGTCACGTTCGCAGACCCAGCAAGTGTAGATAAAGTATTAGGTCAGCCCCACCATGAGTTAGATTCCAAGACGATTGACCCCAAAGTTGCATTTCCTCGTCGAGCGCAACCCAAGATCCGGAGTTAGGTGTTGGCACGCTACCAGAACATGACAGCCAGGATGCAGGGCCGATTGTCCCCAAGATATCGGGTCTAGAGAGAAGCCAGGAGAAGAGCCAGGACTGTTGCAAAGATT CTX 5.83 LQ 3 Fusion 0,0,0,0,0,0 NM_138962,NM_170721,NM_138962,NM_170721,, ,,,,, 5,4,5,4,, ,,,,, 312,300,312,300,, ,,,,, ,,,,, NM_001127231,NM_001127231,NM_015570,NM_015570,NM_001127231,NM_015570 248,248,248,248,248,248 7,7,7,7,, tuple,tuple,tuple,tuple,tuple,tuple 743,743,743,743,743,743 3708,3708,3780,3780,3708,3780 50,50,50,50,, ,,,,, RSHYETLQRLRFRHVRRPSKCR*SIRSAPP*VRFQDD*PQSCISSSSATQDPELGVGTLPEHDSQDAGPIVPKISGLERSQEKSQDCCKD,RSHYETLQRLRFRHVRRPSKCR*SIRSAPP*VRFQDD*PQSCISSSSATQDPELGVGTLPEHDSQDAGPIVPKISGLERSQEKSQDCCKD,RSHYETLQRLRFRHVRRPSKCR*SIRSAPP*VRFQDD*PQSCISSSSATQDPELGVGTLPEHDSQDAGPIVPKISGLERSQEKSQDCCKD,RSHYETLQRLRFRHVRRPSKCR*SIRSAPP*VRFQDD*PQSCISSSSATQDPELGVGTLPEHDSQDAGPIVPKISGLERSQEKSQDCCKD,, MSI2:NM_138962[1,5]-AUTS2:NM_001127231[7,18];MSI2:NM_170721[1,4]-AUTS2:NM_001127231[7,18];MSI2:NM_138962[1,5]-AUTS2:NM_015570[7,19];MSI2:NM_170721[1,4]-AUTS2:NM_015570[7,19];; geneB_transcripts=NM_001127231,NM_015570 ,,,,, 2,2,2,2,, SJBALL020704_D1 TNFAIP3 chr6 138200349 + coding AUTS2 chr7 70250939 + coding > 0 5 49 118 0.000 0.000 0 92 0.001 0.016 49 54 CCCCTCCCCGCATTCTTGCCACAGAGCTGGAAACGACGCCCCTGCTGGCCACCTAGAGCCTTTTAATCGGCCGTCTACATTCACAGGCCTAGCAGCAGTTGGTGGCAATGCCTTCGGGGGACTTGGAAATCCTTCCGTTACACCCAACTCAATGTTCGGCCACAAGGATGGC CTX 4.97 LQ 2 Fusion 1,1,1,1,1,1 NM_001270507,NM_001270508,NM_006290,NM_001270507,NM_001270508,NM_006290 590,590,590,590,590,590 7,7,7,7,7,7 tuple,tuple,tuple,tuple,tuple,tuple 1767,1767,1767,1767,1767,1767 15,15,15,15,15,15 48,48,48,48,48,48 NM_001127231,NM_001127231,NM_001127231,NM_015570,NM_015570,NM_015570 718,718,718,742,742,742 16,16,16,17,17,17 tuple,tuple,tuple,tuple,tuple,tuple 2153,2153,2153,2225,2225,2225 3708,3708,3708,3780,3780,3780 18,18,18,18,18,18 55,55,55,55,55,55 PSPHSCHRAGNDAPAGHLEPFNRPSTFTGLAAVGGNAFGGLGNPSVTPNSMFGHKDG,PSPHSCHRAGNDAPAGHLEPFNRPSTFTGLAAVGGNAFGGLGNPSVTPNSMFGHKDG,PSPHSCHRAGNDAPAGHLEPFNRPSTFTGLAAVGGNAFGGLGNPSVTPNSMFGHKDG,PSPHSCHRAGNDAPAGHLEPFNRPSTFTGLAAVGGNAFGGLGNPSVTPNSMFGHKDG,PSPHSCHRAGNDAPAGHLEPFNRPSTFTGLAAVGGNAFGGLGNPSVTPNSMFGHKDG,PSPHSCHRAGNDAPAGHLEPFNRPSTFTGLAAVGGNAFGGLGNPSVTPNSMFGHKDG TNFAIP3:NM_001270507[1,7]-AUTS2:NM_001127231[16,18];TNFAIP3:NM_001270508[1,7]-AUTS2:NM_001127231[16,18];TNFAIP3:NM_006290[1,7]-AUTS2:NM_001127231[16,18];TNFAIP3:NM_001270507[1,7]-AUTS2:NM_015570[17,19];TNFAIP3:NM_001270508[1,7]-AUTS2:NM_015570[17,19];TNFAIP3:NM_006290[1,7]-AUTS2:NM_015570[17,19] geneB_transcripts=NM_001127231,NM_015570 HL,HL,HL,HL,HL,HL 1,1,1,1,1,1 SJBALL020704_D1 MYB chr6 135509044 + coding TLK1 chr2 171939363 - coding > 2 1 32 106 0.000 0.000 114 30 0.013 0.030 32 30 TGACTGGAAAGTTATTGCCAATTATCTCCCGGCCTCAACAAATAACGAAAGCTCTAATCACAGTTTTGGAAGCTTGGGATCTTTAAGTGACAAAGAATCAGAGACACCGGAGAAGAAACAATCGGAATCATCCAGG CTX 4.21 LQ 3 Fusion 1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1 NM_001130172,NM_001130173,NM_001161656,NM_001161657,NM_001161658,NM_001161659,NM_001161660,NM_005375,NM_001130172,NM_001130173,NM_001161656,NM_001161657,NM_001161658,NM_001161659,NM_001161660,NM_005375 72,72,72,72,72,72,72,72,72,72,72,72,72,72,72,72 3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3 perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect 213,213,213,213,213,213,213,213,213,213,213,213,213,213,213,213 9,9,9,9,9,9,9,9,9,9,9,9,9,9,9,9 30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30 NM_001136554,NM_001136554,NM_001136554,NM_001136554,NM_001136554,NM_001136554,NM_001136554,NM_001136554,NM_012290,NM_012290,NM_012290,NM_012290,NM_012290,NM_012290,NM_012290,NM_012290 39,39,39,39,39,39,39,39,87,87,87,87,87,87,87,87 3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3 tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 115,115,115,115,115,115,115,115,259,259,259,259,259,259,259,259 2157,2157,2157,2157,2157,2157,2157,2157,2301,2301,2301,2301,2301,2301,2301,2301 10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10 31,31,31,31,31,31,31,31,31,31,31,31,31,31,31,31 DWKVIANYLPASTNNESSNHSFGSLGSLSDKESETPEKKQSESSR,DWKVIANYLPASTNNESSNHSFGSLGSLSDKESETPEKKQSESSR,DWKVIANYLPASTNNESSNHSFGSLGSLSDKESETPEKKQSESSR,DWKVIANYLPASTNNESSNHSFGSLGSLSDKESETPEKKQSESSR,DWKVIANYLPASTNNESSNHSFGSLGSLSDKESETPEKKQSESSR,DWKVIANYLPASTNNESSNHSFGSLGSLSDKESETPEKKQSESSR,DWKVIANYLPASTNNESSNHSFGSLGSLSDKESETPEKKQSESSR,DWKVIANYLPASTNNESSNHSFGSLGSLSDKESETPEKKQSESSR,DWKVIANYLPASTNNESSNHSFGSLGSLSDKESETPEKKQSESSR,DWKVIANYLPASTNNESSNHSFGSLGSLSDKESETPEKKQSESSR,DWKVIANYLPASTNNESSNHSFGSLGSLSDKESETPEKKQSESSR,DWKVIANYLPASTNNESSNHSFGSLGSLSDKESETPEKKQSESSR,DWKVIANYLPASTNNESSNHSFGSLGSLSDKESETPEKKQSESSR,DWKVIANYLPASTNNESSNHSFGSLGSLSDKESETPEKKQSESSR,DWKVIANYLPASTNNESSNHSFGSLGSLSDKESETPEKKQSESSR,DWKVIANYLPASTNNESSNHSFGSLGSLSDKESETPEKKQSESSR MYB:NM_001130172[1,3]-TLK1:NM_001136554[3,21];MYB:NM_001130173[1,3]-TLK1:NM_001136554[3,21];MYB:NM_001161656[1,3]-TLK1:NM_001136554[3,21];MYB:NM_001161657[1,3]-TLK1:NM_001136554[3,21];MYB:NM_001161658[1,3]-TLK1:NM_001136554[3,21];MYB:NM_001161659[1,3]-TLK1:NM_001136554[3,21];MYB:NM_001161660[1,3]-TLK1:NM_001136554[3,21];MYB:NM_005375[1,3]-TLK1:NM_001136554[3,21];MYB:NM_001130172[1,3]-TLK1:NM_012290[3,21];MYB:NM_001130173[1,3]-TLK1:NM_012290[3,21];MYB:NM_001161656[1,3]-TLK1:NM_012290[3,21];MYB:NM_001161657[1,3]-TLK1:NM_012290[3,21];MYB:NM_001161658[1,3]-TLK1:NM_012290[3,21];MYB:NM_001161659[1,3]-TLK1:NM_012290[3,21];MYB:NM_001161660[1,3]-TLK1:NM_012290[3,21];MYB:NM_005375[1,3]-TLK1:NM_012290[3,21] geneB_transcripts=NM_001136554,NM_012290 ,,,,,,,,,,,,,,, 1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1 SJBALL020704_D1 TPM4 chr19 16187507 + coding CIC chr19 42790923 + coding > 5 2 62 81 0.483 0.000 122 77 0.038 0.032 62 62 CGGAAGACCGCGCGCAGGGCCTGCAGCGGGAGCTGGACGGCGAGCGCGAGCGGCGCGAGAAATGTGGACGAATGTGGAACCTCGCTCTGTGGCTGTGTTCCCTTGGCACTCCTTAGTCCCCTTCCTGGCACCCAGCCAGCCTGTCCCACCTGGTGGCCGTTC DEL 4.12 LQ 3 Fusion 0,0,3 NM_001145160,NM_003290, ,, 2,1, ,, ,132, ,, ,, NM_015125,NM_015125,NM_015125 23,23,23 2,2, blat,blat,blat 68,68,68 4827,4827,4827 21,21, ,, GRPRAGPAAGAGRRARAAREMWTNVEPRSVAVFPWHSLVPFLAPSQPVPPGGR,GRPRAGPAAGAGRRARAAREMWTNVEPRSVAVFPWHSLVPFLAPSQPVPPGGR, TPM4:NM_001145160[1,2]-CIC:NM_015125[2,20];TPM4:NM_003290[1,1]-CIC:NM_015125[2,20]; geneB_transcripts=NM_015125 ,, 1,1, SJBALL020704_D1 TBL1XR1 chr3 176914909 - 5utr ABI1 chr10 27054249 - coding > 0 2 73 36 0.000 0.053 1 137 0.000 0.012 73 72 CGGCGAGGAGGGGAATTTCCTTGTGCCTCCATTCCCGGGAGGGGGGAGCGGCGTTGGAGGCCACCGTTTCCAGTGGAAGTAGTGGAGGAAGTGGAAGTCGAGAAAACA CTX 2.41 LQ 3 NLoss 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 NM_024665,NM_024665,NM_024665,NM_024665,NM_024665,NM_024665,NM_024665,NM_024665,NM_024665,NM_024665,NM_024665,NM_024665,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,, 1,1,1,1,1,1,1,1,1,1,1,1,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,, NM_001012750,NM_001012751,NM_001012752,NM_001178116,NM_001178119,NM_001178120,NM_001178121,NM_001178122,NM_001178123,NM_001178124,NM_001178125,NM_005470,NM_001012750,NM_001012751,NM_001012752,NM_001178116,NM_001178119,NM_001178120,NM_001178121,NM_001178122,NM_001178123,NM_001178124,NM_001178125,NM_005470 240,240,235,257,240,240,235,240,240,235,176,240,240,240,235,257,240,240,235,240,240,235,176,240 7,7,6,8,7,7,6,7,7,6,5,7,,,,,,,,,,,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 720,720,705,771,720,720,705,720,720,705,528,720,720,720,705,771,720,720,705,720,720,705,528,720 1446,1359,1431,1491,1443,1356,1341,1269,1182,1167,990,1527,1446,1359,1431,1491,1443,1356,1341,1269,1182,1167,990,1527 23,23,23,23,23,23,23,23,23,23,23,23,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,, ARRGISLCLHSREGGAALEATVSSGSSGGSGSREN,ARRGISLCLHSREGGAALEATVSSGSSGGSGSREN,ARRGISLCLHSREGGAALEATVSSGSSGGSGSREN,ARRGISLCLHSREGGAALEATVSSGSSGGSGSREN,ARRGISLCLHSREGGAALEATVSSGSSGGSGSREN,ARRGISLCLHSREGGAALEATVSSGSSGGSGSREN,ARRGISLCLHSREGGAALEATVSSGSSGGSGSREN,ARRGISLCLHSREGGAALEATVSSGSSGGSGSREN,ARRGISLCLHSREGGAALEATVSSGSSGGSGSREN,ARRGISLCLHSREGGAALEATVSSGSSGGSGSREN,ARRGISLCLHSREGGAALEATVSSGSSGGSGSREN,ARRGISLCLHSREGGAALEATVSSGSSGGSGSREN,,,,,,,,,,,, TBL1XR1:NM_024665[1,1]-ABI1:NM_001012750[7,11];TBL1XR1:NM_024665[1,1]-ABI1:NM_001012751[7,10];TBL1XR1:NM_024665[1,1]-ABI1:NM_001012752[6,10];TBL1XR1:NM_024665[1,1]-ABI1:NM_001178116[8,12];TBL1XR1:NM_024665[1,1]-ABI1:NM_001178119[7,11];TBL1XR1:NM_024665[1,1]-ABI1:NM_001178120[7,10];TBL1XR1:NM_024665[1,1]-ABI1:NM_001178121[6,9];TBL1XR1:NM_024665[1,1]-ABI1:NM_001178122[7,10];TBL1XR1:NM_024665[1,1]-ABI1:NM_001178123[7,9];TBL1XR1:NM_024665[1,1]-ABI1:NM_001178124[6,8];TBL1XR1:NM_024665[1,1]-ABI1:NM_001178125[5,7];TBL1XR1:NM_024665[1,1]-ABI1:NM_005470[7,12];;;;;;;;;;;; geneB_transcripts=NM_001012750,NM_001012751,NM_001012752,NM_001178116,NM_001178119,NM_001178120,NM_001178121,NM_001178122,NM_001178123,NM_001178124,NM_001178125,NM_005470 ,,,,,,,,,,,,,,,,,,,,,,, 2,2,2,2,2,2,2,2,2,2,2,2,,,,,,,,,,,, SJBALL020704_D1 KPNA3 chr13 50296613 - coding KAT6B chr10 76788245 + coding > 2 0 137 93 0.000 0.000 62 0 0.012 0.000 138 136 TAACATAGCATCAGGAACTTCTGCACAGACTCAAGCTGTTGTGCAGTCTAATGCAGTACCTCTTTTTCTGAGACTTCTTCGTTCACCACATCAGAATGTTTGTGAACAAGCAGTATGGGCTTTGGGAAACATTATAGACAATATGAATGATGATTCAAGTAACTTGAAAGAAGGCAGTAAAGACAATCCCGAACCTCTAAAGTGCAAACAAGTGTGGCCAAAAGGAAC CTX 1.95 LQ 2 Fusion 1,1,1 NM_002267,NM_002267,NM_002267 186,186,186 8,8,8 tuple,tuple,tuple 556,556,556 44,44,44 135,135,135 NM_001256468,NM_001256469,NM_012330 1039,930,1222 18,18,18 blat,blat,blat 3116,2789,3665 5673,5346,6222 46,46,46 139,139,139 NIASGTSAQTQAVVQSNAVPLFLRLLRSPHQNVCEQAVWALGNIIDNMNDDSSNLKEGSKDNPEPLKCKQVWPKG,NIASGTSAQTQAVVQSNAVPLFLRLLRSPHQNVCEQAVWALGNIIDNMNDDSSNLKEGSKDNPEPLKCKQVWPKG,NIASGTSAQTQAVVQSNAVPLFLRLLRSPHQNVCEQAVWALGNIIDNMNDDSSNLKEGSKDNPEPLKCKQVWPKG KPNA3:NM_002267[1,8]-KAT6B:NM_001256468[18,18];KPNA3:NM_002267[1,8]-KAT6B:NM_001256469[18,18];KPNA3:NM_002267[1,8]-KAT6B:NM_012330[18,18] geneB_transcripts=NM_001256468,NM_001256469,NM_012330 D,D,D 1,1,1 SJBALL020704_D1 BCOR chrX 40005698 - intron SEPT9 chr17 75478217 + coding > 1 1 116 44 0.000 0.000 37 24 0.125 0.000 117 110 GCTGAGCCTCCACTCTGGCGAGAGATAAATGGCCTCTGACAGCCCCTCCTCGCCAAGAGAGCTCCTCGGATTTCACCGCGCGGCGGCTCTCAGGTCTGTGCCTCGCTCGCTTCCCGCCACTGAGGCGGCTCCCAGCTGCGTTGGCGACATGGCG CTX 1.84 LQ 3 NLoss 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3,3,3,3,3,3,3,3,3,3,3 NM_001123383,NM_001123384,NM_001123383,NM_001123384,NM_001123383,NM_001123384,NM_001123383,NM_001123384,NM_001123383,NM_001123384,NM_001123383,NM_001123384,NM_001123383,NM_001123384,NM_001123383,NM_001123384,NM_001123383,NM_001123384,NM_001123383,NM_001123384,NM_001123383,NM_001123384,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, NM_001113491,NM_001113491,NM_001113492,NM_001113492,NM_001113493,NM_001113493,NM_001113494,NM_001113494,NM_001113495,NM_001113495,NM_001113496,NM_001113496,NM_001293695,NM_001293695,NM_001293696,NM_001293696,NM_001293697,NM_001293697,NM_001293698,NM_001293698,NM_006640,NM_006640,NM_001113491,NM_001113492,NM_001113493,NM_001113494,NM_001113495,NM_001113496,NM_001293695,NM_001293696,NM_001293697,NM_001293698,NM_006640 241,241,77,77,234,234,77,77,129,129,-10,-10,222,222,17,17,-10,-10,-10,-10,223,223,241,77,234,77,129,-10,222,17,-10,-10,223 4,4,4,4,3,3,3,3,2,2,2,2,3,3,2,2,2,2,2,2,3,3,,,,,,,,,,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 722,722,230,230,701,701,230,230,386,386,,,665,665,50,50,,,,,668,668,722,230,701,230,386,,665,50,,,668 1761,1761,1269,1269,1740,1740,1269,1269,1425,1425,1008,1008,1704,1704,1089,1089,1008,1008,1008,1008,1707,1707,1761,1269,1740,1269,1425,1008,1704,1089,1008,1008,1707 38,38,38,38,38,38,38,38,38,38,41,41,38,38,38,38,41,41,41,41,38,38,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, LSLHSGER*MASDSPSSPRELLGFHRAAALRSVPRSLPATEAAPSCVGDMA,LSLHSGER*MASDSPSSPRELLGFHRAAALRSVPRSLPATEAAPSCVGDMA,LSLHSGER*MASDSPSSPRELLGFHRAAALRSVPRSLPATEAAPSCVGDMA,LSLHSGER*MASDSPSSPRELLGFHRAAALRSVPRSLPATEAAPSCVGDMA,LSLHSGER*MASDSPSSPRELLGFHRAAALRSVPRSLPATEAAPSCVGDMA,LSLHSGER*MASDSPSSPRELLGFHRAAALRSVPRSLPATEAAPSCVGDMA,LSLHSGER*MASDSPSSPRELLGFHRAAALRSVPRSLPATEAAPSCVGDMA,LSLHSGER*MASDSPSSPRELLGFHRAAALRSVPRSLPATEAAPSCVGDMA,LSLHSGER*MASDSPSSPRELLGFHRAAALRSVPRSLPATEAAPSCVGDMA,LSLHSGER*MASDSPSSPRELLGFHRAAALRSVPRSLPATEAAPSCVGDMA,LSLHSGER*MASDSPSSPRELLGFHRAAALRSVPRSLPATEAAPSCVGDMA,LSLHSGER*MASDSPSSPRELLGFHRAAALRSVPRSLPATEAAPSCVGDMA,LSLHSGER*MASDSPSSPRELLGFHRAAALRSVPRSLPATEAAPSCVGDMA,LSLHSGER*MASDSPSSPRELLGFHRAAALRSVPRSLPATEAAPSCVGDMA,LSLHSGER*MASDSPSSPRELLGFHRAAALRSVPRSLPATEAAPSCVGDMA,LSLHSGER*MASDSPSSPRELLGFHRAAALRSVPRSLPATEAAPSCVGDMA,LSLHSGER*MASDSPSSPRELLGFHRAAALRSVPRSLPATEAAPSCVGDMA,LSLHSGER*MASDSPSSPRELLGFHRAAALRSVPRSLPATEAAPSCVGDMA,LSLHSGER*MASDSPSSPRELLGFHRAAALRSVPRSLPATEAAPSCVGDMA,LSLHSGER*MASDSPSSPRELLGFHRAAALRSVPRSLPATEAAPSCVGDMA,LSLHSGER*MASDSPSSPRELLGFHRAAALRSVPRSLPATEAAPSCVGDMA,LSLHSGER*MASDSPSSPRELLGFHRAAALRSVPRSLPATEAAPSCVGDMA,,,,,,,,,,, BCOR:NM_001123383[1,1]-SEPT9:NM_001113491[4,12];BCOR:NM_001123384[1,1]-SEPT9:NM_001113491[4,12];BCOR:NM_001123383[1,1]-SEPT9:NM_001113492[4,12];BCOR:NM_001123384[1,1]-SEPT9:NM_001113492[4,12];BCOR:NM_001123383[1,1]-SEPT9:NM_001113493[3,11];BCOR:NM_001123384[1,1]-SEPT9:NM_001113493[3,11];BCOR:NM_001123383[1,1]-SEPT9:NM_001113494[3,11];BCOR:NM_001123384[1,1]-SEPT9:NM_001113494[3,11];BCOR:NM_001123383[1,1]-SEPT9:NM_001113495[2,10];BCOR:NM_001123384[1,1]-SEPT9:NM_001113495[2,10];BCOR:NM_001123383[1,1]-SEPT9:NM_001113496[2,10];BCOR:NM_001123384[1,1]-SEPT9:NM_001113496[2,10];BCOR:NM_001123383[1,1]-SEPT9:NM_001293695[3,11];BCOR:NM_001123384[1,1]-SEPT9:NM_001293695[3,11];BCOR:NM_001123383[1,1]-SEPT9:NM_001293696[2,10];BCOR:NM_001123384[1,1]-SEPT9:NM_001293696[2,10];BCOR:NM_001123383[1,1]-SEPT9:NM_001293697[2,10];BCOR:NM_001123384[1,1]-SEPT9:NM_001293697[2,10];BCOR:NM_001123383[1,1]-SEPT9:NM_001293698[2,10];BCOR:NM_001123384[1,1]-SEPT9:NM_001293698[2,10];BCOR:NM_001123383[1,1]-SEPT9:NM_006640[3,11];BCOR:NM_001123384[1,1]-SEPT9:NM_006640[3,11];;;;;;;;;;; geneB_transcripts=NM_001113491,NM_001113492,NM_001113493,NM_001113494,NM_001113495,NM_001113496,NM_001293695,NM_001293696,NM_001293697,NM_001293698,NM_006640;geneb_utr_codons=11 ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,,,,,,,,,,, SJBALL020704_D1 CRIM1 chr2 36583766 + coding BCL11A chr2 60695970 - coding > 0 1 46 108 0.000 0.000 0 43 0.025 0.027 46 44 CTCAATGGCGACTCCCTCACCGAGTACGAAGCGGGCGTTTGCGAAGATAAACTTCTGCACTGGAGGGGCCTCTCCTCCCCTCGTTCTGCACATGGAGCTCTAATCCCCACGCCTGGGATGAGTGCAGAATATGCCCCGCAGGGTATTTGTAAAGAT ITX 1.78 LQ 2 Fusion 1,1,1 NM_016441,NM_016441,NM_016441 111,111,111 1,1,1 perfect,perfect,perfect 331,331,331 14,14,14 44,44,44 NM_018014,NM_022893,NM_138559 129,129,129 3,3,3 tuple,tuple,tuple 386,386,386 2322,2508,732 15,15,15 45,45,45 LNGDSLTEYEAGVCEDKLLHWRGLSSPRSAHGALIPTPGMSAEYAPQGICKD,LNGDSLTEYEAGVCEDKLLHWRGLSSPRSAHGALIPTPGMSAEYAPQGICKD,LNGDSLTEYEAGVCEDKLLHWRGLSSPRSAHGALIPTPGMSAEYAPQGICKD CRIM1:NM_016441[1,1]-BCL11A:NM_018014[3,5];CRIM1:NM_016441[1,1]-BCL11A:NM_022893[3,4];CRIM1:NM_016441[1,1]-BCL11A:NM_138559[3,5] geneB_transcripts=NM_018014,NM_022893,NM_138559 ,, 0,0,0 SJBALL020704_D1 ANKMY1 chr2 241420354 - coding CBFA2T3 chr16 88968065 - coding > 2 0 91 43 0.000 0.000 50 0 0.091 0.000 92 91 TGCTACGGGATCCTGACCTGCAGCAAGTACTGCAAGACCAAGGCCTGGACCGAGTTCCACAAGAAGGACTGCGGGGACCTGGTGGCCATCGCCCCAGTGGACAGGAAAGCTAAGGCCTCAGCGATGCCGGACT CTX 1.74 LQ 2 Fusion 1,1,1,1,1,1,1,1,1,1 NM_001282771,NM_001282780,NM_001282781,NM_016552,NM_017844,NM_001282771,NM_001282780,NM_001282781,NM_016552,NM_017844 1016,706,688,927,703,1016,706,688,927,703 17,13,16,16,13,17,13,16,16,13 perfect,perfect,perfect,perfect,perfect,tuple,tuple,tuple,tuple,tuple 3046,2116,2062,2779,2107,3046,2116,2062,2779,2107 29,29,29,29,29,29,29,29,29,29 89,89,89,89,89,89,89,89,89,89 NM_005187,NM_005187,NM_005187,NM_005187,NM_005187,NM_175931,NM_175931,NM_175931,NM_175931,NM_175931 51,51,51,51,51,-10,-10,-10,-10,-10 2,2,2,2,2,2,2,2,2,2 tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 152,152,152,152,152,,,,, 1962,1962,1962,1962,1962,1704,1704,1704,1704,1704 30,30,30,30,30,33,33,33,33,33 90,90,90,90,90,99,99,99,99,99 CYGILTCSKYCKTKAWTEFHKKDCGDLVAIAPVDRKAKASAMPD,CYGILTCSKYCKTKAWTEFHKKDCGDLVAIAPVDRKAKASAMPD,CYGILTCSKYCKTKAWTEFHKKDCGDLVAIAPVDRKAKASAMPD,CYGILTCSKYCKTKAWTEFHKKDCGDLVAIAPVDRKAKASAMPD,CYGILTCSKYCKTKAWTEFHKKDCGDLVAIAPVDRKAKASAMPD,CYGILTCSKYCKTKAWTEFHKKDCGDLVAIAPVDRKAKASAMPD,CYGILTCSKYCKTKAWTEFHKKDCGDLVAIAPVDRKAKASAMPD,CYGILTCSKYCKTKAWTEFHKKDCGDLVAIAPVDRKAKASAMPD,CYGILTCSKYCKTKAWTEFHKKDCGDLVAIAPVDRKAKASAMPD,CYGILTCSKYCKTKAWTEFHKKDCGDLVAIAPVDRKAKASAMPD ANKMY1:NM_001282771[1,17]-CBFA2T3:NM_005187[2,12];ANKMY1:NM_001282780[1,13]-CBFA2T3:NM_005187[2,12];ANKMY1:NM_001282781[1,16]-CBFA2T3:NM_005187[2,12];ANKMY1:NM_016552[1,16]-CBFA2T3:NM_005187[2,12];ANKMY1:NM_017844[1,13]-CBFA2T3:NM_005187[2,12];ANKMY1:NM_001282771[1,17]-CBFA2T3:NM_175931[2,11];ANKMY1:NM_001282780[1,13]-CBFA2T3:NM_175931[2,11];ANKMY1:NM_001282781[1,16]-CBFA2T3:NM_175931[2,11];ANKMY1:NM_016552[1,16]-CBFA2T3:NM_175931[2,11];ANKMY1:NM_017844[1,13]-CBFA2T3:NM_175931[2,11] geneB_transcripts=NM_005187,NM_175931;geneb_utr_codons=11 ,,,,,APV,APV,APV,APV,APV 0,0,0,0,0,0,0,0,0,0 SJBALL020704_D1 PCYT1A chr3 195975076 - coding EWSR1 chr22 29695587 + coding > 2 0 90 47 0.000 0.484 52 0 0.026 0.000 91 87 GGAATATTTGACTTATTTCACTCTGGTCACGCCCGAGCTCTGATGCAAGCGAAGAACCTTTTCCCTAATACGTACCTCATTGTGGGAGGTGGTGATCGTGGCAGAGGTGGCCCTGGTGGCATGCGGGGAGGAA CTX 1.71 LQ 2 Fusion 1,1,1,1 NM_005017,NM_005017,NM_005017,NM_005017 112,112,112,112 5,5,5,5 perfect,perfect,perfect,perfect 334,334,334,334 28,28,28,28 86,86,86,86 NM_001163285,NM_001163286,NM_005243,NM_013986 559,504,560,565 16,15,16,17 tuple,tuple,tuple,tuple 1676,1511,1679,1694 1968,1803,1971,1986 29,29,29,29 87,87,87,87 GIFDLFHSGHARALMQAKNLFPNTYLIVGGGDRGRGGPGGMRGG,GIFDLFHSGHARALMQAKNLFPNTYLIVGGGDRGRGGPGGMRGG,GIFDLFHSGHARALMQAKNLFPNTYLIVGGGDRGRGGPGGMRGG,GIFDLFHSGHARALMQAKNLFPNTYLIVGGGDRGRGGPGGMRGG PCYT1A:NM_005017[1,5]-EWSR1:NM_001163285[16,17];PCYT1A:NM_005017[1,5]-EWSR1:NM_001163286[15,16];PCYT1A:NM_005017[1,5]-EWSR1:NM_005243[16,17];PCYT1A:NM_005017[1,5]-EWSR1:NM_013986[17,18] geneB_transcripts=NM_001163285,NM_001163286,NM_005243,NM_013986 ,,, 0,0,0,0 SJBALL020704_D1 CXCR4 chr2 136875616 - coding TAX1BP1 chr7 27788137 + coding > 1 2 39 73 0.000 0.000 92 64 0.010 0.013 40 40 CGCATCTGGAGAACCAGCGGTTACCATGGAGGGGAGCAGTATTCACAATGACATCCTTTCAAGAAGTCCCATTGCAGACTTCCAACTTTGCCCATGTCATCTTTCAAAATGTGAGATCGGAAGAGCACACGT CTX 1.55 LQ 3 upTSS 0,0,0,0,2,2,0,2 NM_003467,NM_003467,NM_003467,NM_003467,,,, ,,,,,,, 1,1,1,1,,,, ,,,,,,, 15,15,15,15,,,, ,,,,,,, ,,,,,,, NM_001079864,NM_001206901,NM_001206902,NM_006024,NM_001079864,NM_001206901,NM_001206902,NM_006024 -2,-2,-96,-2,-2,-2,-96,-2 2,2,2,2,,,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple ,,,,,,, 2244,2244,1773,2370,2244,2244,1773,2370 15,15,16,15,,,, ,,,,,,, HLENQRLPWRGAVFTMTSFQEVPLQTSNFAHVIFQNVRSEEHT,HLENQRLPWRGAVFTMTSFQEVPLQTSNFAHVIFQNVRSEEHT,RIWRTSGYHGGEQYSQ*HPFKKSHCRLPTLPMSSFKM*DRKSTR,HLENQRLPWRGAVFTMTSFQEVPLQTSNFAHVIFQNVRSEEHT,,,, CXCR4:NM_003467[1,1]-TAX1BP1:NM_001079864[2,17];CXCR4:NM_003467[1,1]-TAX1BP1:NM_001206901[2,17];CXCR4:NM_003467[1,1]-TAX1BP1:NM_001206902[2,16];CXCR4:NM_003467[1,1]-TAX1BP1:NM_006024[2,17];;;; geneB_transcripts=NM_001079864,NM_001206901,NM_001206902,NM_006024;geneb_utr_codons=3;geneb_utr_codons=13 ,,,,,,, 2,2,0,2,,,, SJBALL020704_D1 CBFA2T3 chr16 89007428 - 5utr SLC7A5,MIR6775 chr16 87885455 - coding > 4 0 55 46 0.000 0.000 106 0 0.160 0.036 56 57 CCGAGTCGCGAGTGTGCGCCGTCCGCCGCCCGCCGGATCCCCCGGTCCCCCCGACCTGCTGCTCACGGCCGTGAACTGCTACAGCGTGAAGGCCGCCACCCG DEL 1.43 LQ 1 NLoss 0,0,0,0 NM_001290330,NM_005187,NM_175931, ,,, 1,1,1, ,,, ,151,, ,,, ,,, NM_003486,NM_003486,NM_003486,NM_003486 180,180,180,180 2,2,2, tuple,tuple,tuple,tuple 539,539,539,539 1524,1524,1524,1524 18,18,18, ,,, RVASVRRPPPAGSPGPPDLLLTAVNCYSVKAAT,RVASVRRPPPAGSPGPPDLLLTAVNCYSVKAAT,RVASVRRPPPAGSPGPPDLLLTAVNCYSVKAAT, LOC100129697:NM_001290330[1,1]-SLC7A5:NM_003486[2,10];CBFA2T3:NM_005187[1,1]-SLC7A5:NM_003486[2,10];CBFA2T3:NM_175931[1,1]-SLC7A5:NM_003486[2,10]; geneB_transcripts=NM_003486 ,,, 1,1,1, SJBALL020704_D1 SH3TC1 chr4 8201132 + 5utr TACC3 chr4 1725145 + coding > 0 1 43 136 0.000 0.000 0 39 0.122 0.093 43 40 GGCCCTGTGGGCCTGGGAGCTGCCTCTGAGGAACACGCCGCAGAATGAGTCTGCAGGTCTTAAACGACAAAAATGTCAGCAATGAAAAAAATACAGAAAATTGCGACTTCCTGTTTTCGCCACCAGAAGTTACCGGAAGATCGTCTGTTCTTCGTGTGTCACAGAAAGAAAATGTG INS 1.37 LQ 2 upTSS 0,2 NM_018986, , 1, , , , , NM_006342,NM_006342 0,0 2, tuple,tuple , 2517,2517 14, , PCGPGSCL*GTRRRMSLQVLNDKNVSNEKNTENCDFLFSPPEVTGRSSVLRVSQKENV, SH3TC1:NM_018986[1,1]-TACC3:NM_006342[2,16]; geneB_transcripts=NM_006342;geneb_utr_codons=1 , 2, SJBALL020704_D1 RNVU1-19 chr1 149514059 - intergenic CSNK1D chr17 80202707 - coding > 11 1 140 42 0.510 0.592 154 6 0.214 0.000 168 183 GGGGAGATACCATGATCATGAAGGCGCTTTTCTCATGGTCGCGGCTTATCCATTGCGTTCCAGATGTGCTGACCTCTGCGATTTCCCCAAATGTGGGAAACTCGACTGCATAATTTGTGATAGTGGGGGACTGCGTTCGTGCTTTCCCCTGGCGCTTTTGTGGTGCGAATAGTAGATGAGCCATTCCTGGTCGGGTGGCTTCCAGTGGTCTTCAGTCTGTCGTG CTX 1.15 LQ 0 NLoss 0 NM_001893 400 tuple 1198 1248 geneA_no_transcript_IDs_found;geneB_no_inframe_contig_found geneB_transcripts=NM_001893,NM_139062;geneb_utr_codons=13 SJBALL020704_D1 TLK2 chr17 60613699 + coding ZCCHC7 chr9 37327796 + coding > 0 1 49 98 0.749 0.481 0 47 0.000 0.019 49 48 GAGCAGCTGGCGCAAAGGGGAGCTGGCCTCTGCTTCACTTTTGTTTCAGCTTGCACAGAAATCTGGAGGCAGTATCACCTAACGACCAAACCTGGACCACCCAAAAAGCCGAAGACCCCTTCAAGACCATCAGCCTTAGCATATTGTCTTGGATA CTX 1.02 LQ 2 Fusion 1,1,1,1,1,1,1,1,1,1,1,1 NM_001284333,NM_001284363,NM_006852,NM_001284333,NM_001284363,NM_006852,NM_001284333,NM_001284363,NM_006852,NM_001284333,NM_001284363,NM_006852 178,146,178,178,146,178,178,146,178,178,146,178 7,5,7,7,5,7,7,5,7,7,5,7 perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect 531,435,531,531,435,531,531,435,531,531,435,531 15,15,15,15,15,15,15,15,15,15,15,15 47,47,47,47,47,47,47,47,47,47,47,47 NM_001289119,NM_001289119,NM_001289119,NM_001289120,NM_001289120,NM_001289120,NM_001289121,NM_001289121,NM_001289121,NM_032226,NM_032226,NM_032226 318,318,318,318,318,318,318,318,318,318,318,318 6,6,6,6,6,6,6,6,6,6,6,6 tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 952,952,952,952,952,952,952,952,952,952,952,952 1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632,1632 16,16,16,16,16,16,16,16,16,16,16,16 48,48,48,48,48,48,48,48,48,48,48,48 EQLAQRGAGLCFTFVSACTEIWRQYHLTTKPGPPKKPKTPSRPSALAYCLG,EQLAQRGAGLCFTFVSACTEIWRQYHLTTKPGPPKKPKTPSRPSALAYCLG,EQLAQRGAGLCFTFVSACTEIWRQYHLTTKPGPPKKPKTPSRPSALAYCLG,EQLAQRGAGLCFTFVSACTEIWRQYHLTTKPGPPKKPKTPSRPSALAYCLG,EQLAQRGAGLCFTFVSACTEIWRQYHLTTKPGPPKKPKTPSRPSALAYCLG,EQLAQRGAGLCFTFVSACTEIWRQYHLTTKPGPPKKPKTPSRPSALAYCLG,EQLAQRGAGLCFTFVSACTEIWRQYHLTTKPGPPKKPKTPSRPSALAYCLG,EQLAQRGAGLCFTFVSACTEIWRQYHLTTKPGPPKKPKTPSRPSALAYCLG,EQLAQRGAGLCFTFVSACTEIWRQYHLTTKPGPPKKPKTPSRPSALAYCLG,EQLAQRGAGLCFTFVSACTEIWRQYHLTTKPGPPKKPKTPSRPSALAYCLG,EQLAQRGAGLCFTFVSACTEIWRQYHLTTKPGPPKKPKTPSRPSALAYCLG,EQLAQRGAGLCFTFVSACTEIWRQYHLTTKPGPPKKPKTPSRPSALAYCLG TLK2:NM_001284333[1,7]-ZCCHC7:NM_001289119[6,9];TLK2:NM_001284363[1,5]-ZCCHC7:NM_001289119[6,9];TLK2:NM_006852[1,7]-ZCCHC7:NM_001289119[6,9];TLK2:NM_001284333[1,7]-ZCCHC7:NM_001289120[6,9];TLK2:NM_001284363[1,5]-ZCCHC7:NM_001289120[6,9];TLK2:NM_006852[1,7]-ZCCHC7:NM_001289120[6,9];TLK2:NM_001284333[1,7]-ZCCHC7:NM_001289121[6,9];TLK2:NM_001284363[1,5]-ZCCHC7:NM_001289121[6,9];TLK2:NM_006852[1,7]-ZCCHC7:NM_001289121[6,9];TLK2:NM_001284333[1,7]-ZCCHC7:NM_032226[6,9];TLK2:NM_001284363[1,5]-ZCCHC7:NM_032226[6,9];TLK2:NM_006852[1,7]-ZCCHC7:NM_032226[6,9] geneB_transcripts=NM_001289119,NM_001289120,NM_001289121,NM_032226 ,,,,,,,,,,, 0,0,0,0,0,0,0,0,0,0,0,0 SJBALL020704_D1 ASIC2 chr17 32366358 - intron ZCCHC7 chr9 37327796 + coding > 0 1 51 98 0.738 0.481 0 47 0.077 0.019 51 48 GAGCAGCTGGCGCAAAGGGGAGCTGGCCTCTGCTTCACTTTTGTTTCAGCTTGCACAGAAATCTGGAGGCAGTATCACCTAACGACCAAACCTGGACCACCCAAAAAGCCGAAGACCCCTTCAAGACCATCAGCCTTAGCATATTGTCTTGGATA CTX 0.88 LQ 3 NLoss 0,0,0,0,0,0,0,0 NM_001094,NM_001094,NM_001094,NM_001094,,,, ,,,,,,, 1,1,1,1,,,, ,,,,,,, 555,555,555,555,,,, ,,,,,,, ,,,,,,, NM_001289119,NM_001289120,NM_001289121,NM_032226,NM_001289119,NM_001289120,NM_001289121,NM_032226 318,318,318,318,318,318,318,318 6,6,6,6,,,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 952,952,952,952,952,952,952,952 1632,1632,1632,1632,1632,1632,1632,1632 16,16,16,16,,,, ,,,,,,, EQLAQRGAGLCFTFVSACTEIWRQYHLTTKPGPPKKPKTPSRPSALAYCLG,EQLAQRGAGLCFTFVSACTEIWRQYHLTTKPGPPKKPKTPSRPSALAYCLG,EQLAQRGAGLCFTFVSACTEIWRQYHLTTKPGPPKKPKTPSRPSALAYCLG,EQLAQRGAGLCFTFVSACTEIWRQYHLTTKPGPPKKPKTPSRPSALAYCLG,,,, ASIC2:NM_001094[1,1]-ZCCHC7:NM_001289119[6,9];ASIC2:NM_001094[1,1]-ZCCHC7:NM_001289120[6,9];ASIC2:NM_001094[1,1]-ZCCHC7:NM_001289121[6,9];ASIC2:NM_001094[1,1]-ZCCHC7:NM_032226[6,9];;;; geneB_transcripts=NM_001289119,NM_001289120,NM_001289121,NM_032226 ,,,,,,, 0,0,0,0,,,, SJBALL020704_D1 FBXO31 chr16 87417010 - coding KAT6A chr8 41907226 - 5utr > 1 0 124 43 0.000 0.000 40 0 0.034 0.000 125 123 AGCTGCTGGTGGAGATCTTCGCGTCGCTGCCGGGCACGGACCTACCCAGCTTGGCCCAGGTCTGCACGAAGTTCCGGCGCATCCTCCACACCGACACCATCTGGAGGAGGCGTTGCCGTGAGGGATTCTTTCTACTAATCCAGATACTTGTTGAAGTGCTGACTA CTX 0.57 LQ 2 Fusion 0,0,0,1 NM_001282683,NM_024735,NM_001282683,NM_024735 ,,,114 2,1,2,1 ,,,tuple ,340,,340 ,,,39 ,,,121 NM_001099412,NM_001099412,NM_001099413,NM_001099413 -152,-152,-137,-137 2,2,2,2 tuple,tuple,tuple,tuple ,,, 6015,6015,6015,6015 43,43,43,43 ,,,131 AAGGDLRVAAGHGPTQLGPGLHEVPAHPPHRHHLEEALP*GILSTNPDTC*SAD,AAGGDLRVAAGHGPTQLGPGLHEVPAHPPHRHHLEEALP*GILSTNPDTC*SAD,LLVEIFASLPGTDLPSLAQVCTKFRRILHTDTIWRRRCREGFFLLIQILVEVLT,LLVEIFASLPGTDLPSLAQVCTKFRRILHTDTIWRRRCREGFFLLIQILVEVLT FBXO31:NM_001282683[1,2]-KAT6A:NM_001099412[2,18];FBXO31:NM_024735[1,1]-KAT6A:NM_001099412[2,18];FBXO31:NM_001282683[1,2]-KAT6A:NM_001099413[2,18];FBXO31:NM_024735[1,1]-KAT6A:NM_001099413[2,18] geneB_no_inframe_contig_found geneB_transcripts=NM_001099412,NM_001099413,NM_006766;geneb_utr_codons=13 ,,,GFF 1,1,2,2 SJBALL020704_D1 SGCZ chr8 15095093 - coding AUTS2 chr7 70163553 + coding > 1 0 143 40 0.000 0.000 36 0 0.214 0.046 144 141 GCTTGGAGGAGGATAAAGCTGAGTTTAAGCTGGAAACTAAAAGACTAGATTGTTTTTGGGTGCCACTCGCCCGGTTCCTCTCCACTTCGTTTAGTTGCGCTCCATGGACAGATCAACGAACCTGGACATTGAGGAGCTCAAGGCATCAGATGCCAGCTCTGAAAAACTCTTCAACACTGT CTX 0.49 LQ 2 Fusion 1,1 NM_139167,NM_139167 14,14 1,1 tuple,tuple 39,39 46,46 141,141 NM_001127231,NM_015570 231,231 6,6 tuple,tuple 691,691 3708,3780 47,47 142,142 LGGG*S*V*AGN*KTRLFLGATRPVPLHFV*LRSMDRSTNLDIEELKASDASSEKLFNT,LGGG*S*V*AGN*KTRLFLGATRPVPLHFV*LRSMDRSTNLDIEELKASDASSEKLFNT SGCZ:NM_139167[1,1]-AUTS2:NM_001127231[6,18];SGCZ:NM_139167[1,1]-AUTS2:NM_015570[6,19] geneB_transcripts=NM_001127231,NM_015570 , 1,1 SJBALL020704_D1 NCK2 chr2 106471745 + coding ATF1 chr12 51173920 + coding > 2 0 104 229 0.000 0.000 64 0 0.009 0.000 105 102 GAGGAACGCGGCCAACAGGACGGGCTATGTACCGTCCAACTACGTGGAGCGGAAGAACAGCCTGAAGAAGGGCTCCCTCGTGAAGAACCTGAAGGACACACTAGTTGATTATGGAAGATTCCCACAAGAGTACCACGTCAGAGACAGCACCTCAACCTGGTTCAGCAGTTCAGGGAGCTCACATTTCTCATATTGCTCAACAGGTATCATCTTTATCAGAAAGTGAGGAGTCCCAGGACTCATCCGACAGCATAGGCTCCTCACAGAAAGCCCACGGGATCCTAGCACGGCGCCCATCTTACAGAAAAATTTTGAAAGACTTATCTTCTG CTX 0.37 LQ 2 upTSS 0,0,0,2 NM_001004720,NM_001004722,NM_003581, ,,, 2,3,3, ,,, 226,226,226, ,,, ,,, NM_005171,NM_005171,NM_005171,NM_005171 -1,-1,-1,-1 2,2,2, tuple,tuple,tuple,tuple ,,, 816,816,816,816 36,36,36, ,,, GTRPTGRAMYRPTTWSGRTA*RRAPS*RT*RTH*LIMEDSHKSTTSETAPQPGSAVQGAHISHIAQQVSSLSESEESQDSSDSIGSSQKAHGILARRPSYRKILKDLSS,GTRPTGRAMYRPTTWSGRTA*RRAPS*RT*RTH*LIMEDSHKSTTSETAPQPGSAVQGAHISHIAQQVSSLSESEESQDSSDSIGSSQKAHGILARRPSYRKILKDLSS,GTRPTGRAMYRPTTWSGRTA*RRAPS*RT*RTH*LIMEDSHKSTTSETAPQPGSAVQGAHISHIAQQVSSLSESEESQDSSDSIGSSQKAHGILARRPSYRKILKDLSS, NCK2:NM_001004720[1,2]-ATF1:NM_005171[2,7];NCK2:NM_001004722[1,3]-ATF1:NM_005171[2,7];NCK2:NM_003581[1,3]-ATF1:NM_005171[2,7]; geneB_transcripts=NM_005171;geneb_utr_codons=2 ,,, 2,2,2, SJBALL020704_D1 SSBP2 chr5 80911292 - coding TOP2B chr3 25686961 - intron > 1 0 117 45 0.000 0.000 45 0 0.016 0.000 118 119 GATGGGAAAAAAAACATCACATTGGGGGAACCACCAGGATTCTTACATTCTTGGTGGTGCTCCAGAGAGACGTGAAACATGTGAACACTCAAGTGAAGCAAAAGCCTTCCATGATTACACTCTTTTTGATCAGAACAATGCTGCAAAAAAAGAAGAGTCAGAA CTX 0.34 LQ 3 Fusion 1,1,1,1,1,1 NM_001256732,NM_001256733,NM_001256734,NM_001256735,NM_001256736,NM_012446 95,95,95,95,95,95 4,4,4,4,4,4 tuple,tuple,tuple,tuple,tuple,tuple 282,282,282,282,282,282 38,38,38,38,38,38 117,117,117,117,117,117 NM_001068,NM_001068,NM_001068,NM_001068,NM_001068,NM_001068 24,24,24,24,24,24 2,2,2,2,2,2 tuple,tuple,tuple,tuple,tuple,tuple 70,70,70,70,70,70 4866,4866,4866,4866,4866,4866 44,44,44,44,44,44 133,133,133,133,133,133 MGKKTSHWGNHQDSYILGGAPERRETCEHSSEAKAFHDYTLFDQNNAAKKEESE,MGKKTSHWGNHQDSYILGGAPERRETCEHSSEAKAFHDYTLFDQNNAAKKEESE,MGKKTSHWGNHQDSYILGGAPERRETCEHSSEAKAFHDYTLFDQNNAAKKEESE,MGKKTSHWGNHQDSYILGGAPERRETCEHSSEAKAFHDYTLFDQNNAAKKEESE,MGKKTSHWGNHQDSYILGGAPERRETCEHSSEAKAFHDYTLFDQNNAAKKEESE,MGKKTSHWGNHQDSYILGGAPERRETCEHSSEAKAFHDYTLFDQNNAAKKEESE SSBP2:NM_001256732[1,4]-TOP2B:NM_001068[2,36];SSBP2:NM_001256733[1,4]-TOP2B:NM_001068[2,36];SSBP2:NM_001256734[1,4]-TOP2B:NM_001068[2,36];SSBP2:NM_001256735[1,4]-TOP2B:NM_001068[2,36];SSBP2:NM_001256736[1,4]-TOP2B:NM_001068[2,36];SSBP2:NM_012446[1,4]-TOP2B:NM_001068[2,36] geneB_transcripts=NM_001068 TLFDQ,TLFDQ,TLFDQ,TLFDQ,TLFDQ,TLFDQ 1,1,1,1,1,1 SJBALL020704_D1 AFF1 chr4 87928576 + coding CLIP1 chr12 122839105 - coding > 1 0 120 46 0.000 0.000 45 0 0.016 0.000 121 121 GCGTCCCCGCCCGGCTCCGCCAAATGGTGAGCGCGGCGCTGGCAGCAGGGCCCGCGGGGTGAAGGCGCTCATGGACGGAAGACCCCTGGCTCTATAAGCTGAATTATGGCAGACCAGGCAAGCATGTCCTGGAATTGGAAGCCAAAATGGACCAGCTGCGAACAAT CTX 0.28 LQ 3 Fusion 0,0,0,0,0,0,0,0,0 NM_001166693,NM_005935,NM_001166693,NM_005935,NM_001166693,NM_005935,,, ,,,,,,,, 2,1,2,1,2,1,,, ,,,,,,,, ,17,,17,,17,,, ,,,,,,,, ,,,,,,,, NM_001247997,NM_001247997,NM_002956,NM_002956,NM_198240,NM_198240,NM_001247997,NM_002956,NM_198240 402,402,402,402,402,402,402,402,402 7,7,7,7,7,7,,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 1204,1204,1204,1204,1204,1204,1204,1204,1204 4317,4317,4284,4284,4179,4179,4317,4284,4179 40,40,40,40,40,40,,, ,,,,,,,, VPARLRQMVSAALAAGPAG*RRSWTEDPWLYKLNYGRPGKHVLELEAKMDQLRT,VPARLRQMVSAALAAGPAG*RRSWTEDPWLYKLNYGRPGKHVLELEAKMDQLRT,VPARLRQMVSAALAAGPAG*RRSWTEDPWLYKLNYGRPGKHVLELEAKMDQLRT,VPARLRQMVSAALAAGPAG*RRSWTEDPWLYKLNYGRPGKHVLELEAKMDQLRT,VPARLRQMVSAALAAGPAG*RRSWTEDPWLYKLNYGRPGKHVLELEAKMDQLRT,VPARLRQMVSAALAAGPAG*RRSWTEDPWLYKLNYGRPGKHVLELEAKMDQLRT,,, AFF1:NM_001166693[1,2]-CLIP1:NM_001247997[7,26];AFF1:NM_005935[1,1]-CLIP1:NM_001247997[7,26];AFF1:NM_001166693[1,2]-CLIP1:NM_002956[7,25];AFF1:NM_005935[1,1]-CLIP1:NM_002956[7,25];AFF1:NM_001166693[1,2]-CLIP1:NM_198240[7,24];AFF1:NM_005935[1,1]-CLIP1:NM_198240[7,24];;; geneB_transcripts=NM_001247997,NM_002956,NM_198240 ,,,,,,,, 2,2,2,2,2,2,,, SJBALL020704_D1 METAP1 chr4 99917021 + coding HIPK1 chr1 114483003 + coding > 0 1 90 144 0.000 0.007 0 42 0.067 0.009 99 95 TTCCGATCTGAGACAGACGGCTGCAGCAGTGAGGCCAAGCTCCAGTGTCCCACTTGCATCAAGCTGGGCATCCAGGGCTCGTACTTCTGCTCGCAGGTATGGCATCACAGCTGCAAGTGTTTTCGCCCCCATCAGTGTCGTCGAGTGCCTTCTGCAGTGCGAAGAAACTGAAAATAGAGCCCTCTGGCTGGGATGTTTCAGGACAGAGTAGCAACGACAAATATTATACCCACAGCAAA CTX 0.27 LQ 2 upTSS 0,0,2,2 NM_015143,NM_015143,, ,,, 1,1,, ,,, 114,114,, ,,, ,,, NM_152696,NM_198268,NM_152696,NM_198268 0,0,0,0 2,2,, tuple,tuple,tuple,tuple ,,, 3228,3633,3228,3633 32,32,, ,,, PI*DRRLQQ*GQAPVSHLHQAGHPGLVLLLAGMASQLQVFSPPSVSSSAFCSAKKLKIEPSGWDVSGQSSNDKYYTHSK,PI*DRRLQQ*GQAPVSHLHQAGHPGLVLLLAGMASQLQVFSPPSVSSSAFCSAKKLKIEPSGWDVSGQSSNDKYYTHSK,, METAP1:NM_015143[1,1]-HIPK1:NM_152696[2,15];METAP1:NM_015143[1,1]-HIPK1:NM_198268[2,16];; geneB_transcripts=NM_152696,NM_198268;geneb_utr_codons=1 ,,, 2,2,, SJBALL020704_D1 BAHCC1 chr17 79373717 + coding YY1 chr14 100728639 + coding > 0 1 50 165 0.000 0.006 0 47 0.190 0.008 50 48 CCAGCCGGGAAAGTACTTCCCGTCGCCGTTGCCCATGGCTTCGCACACAGATGAAAAAAAAGATATTGACCATGAGACAGTGGTTGAAGAACAGATCATTGGAGAGAACTCACCTCCTGATTATTCAGAATATATGACAGGAAAGAAACTTCCTCCTGGAGGAATACCTGGCATTGACCTCTCAGATCCCAAACAACTGGCAGAATTTGCTAGAATGAAGCCAAG CTX 0.21 LQ 2 Fusion 1 NM_001291324 60 perfect 15 48 NM_003403 227 2 tuple 680 1245 16 49 QPGKYFPSPLPMASHTDEKKDIDHETVVEEQIIGENSPPDYSEYMTGKKLPPGGIPGIDLSDPKQLAEFARMKP BAHCC1:NM_001291324[1,0]-YY1:NM_003403[2,5] geneB_transcripts=NM_003403;reannotated geneB from YY1,MIR6764 to YY1 1 SJBALL020704_D1 CSRNP2 chr12 51476302 - intron ZMYM2 chr13 20567201 + 5utr > 0 1 44 111 0.000 0.000 1 39 0.000 0.015 44 40 CAAGACAACACTGTCCCCTTGTCCTGCAGTTTTCAGTTCAAGGTTCTTTGGCATGGACACAAGTTCAGTGGGAGGATTAGAATTGACTGATCAGACTCCTGTTTTATTAGGGAGTACGGCCATGGCAACTAGTCTCACGAATGTAGGAAAC CTX 0.13 LQ 3 upTSS 0,0,0,0,2,2,2,2 NM_030809,NM_030809,NM_030809,NM_030809,,,, ,,,,,,, 1,1,1,1,,,, ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, NM_001190964,NM_001190965,NM_003453,NM_197968,NM_001190964,NM_001190965,NM_003453,NM_197968 -3,-3,-3,-3,-3,-3,-3,-3 4,3,4,3,,,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple ,,,,,,, 4134,4134,4134,4134,4134,4134,4134,4134 16,16,16,16,,,, ,,,,,,, KTTLSPCPAVFSSRFFGMDTSSVGGLELTDQTPVLLGSTAMATSLTNVGN,KTTLSPCPAVFSSRFFGMDTSSVGGLELTDQTPVLLGSTAMATSLTNVGN,KTTLSPCPAVFSSRFFGMDTSSVGGLELTDQTPVLLGSTAMATSLTNVGN,KTTLSPCPAVFSSRFFGMDTSSVGGLELTDQTPVLLGSTAMATSLTNVGN,,,, CSRNP2:NM_030809[1,1]-ZMYM2:NM_001190964[4,26];CSRNP2:NM_030809[1,1]-ZMYM2:NM_001190965[3,25];CSRNP2:NM_030809[1,1]-ZMYM2:NM_003453[4,26];CSRNP2:NM_030809[1,1]-ZMYM2:NM_197968[3,25];;;; geneB_transcripts=NM_001190964,NM_001190965,NM_003453,NM_197968;geneb_utr_codons=4 ,,,,,,, 1,1,1,1,,,, SJBALL020704_D1 CELF1 chr11 47500427 - coding TPM3 chr1 154130193 - coding > 1 0 201 43 0.000 0.855 45 0 0.040 0.000 202 204 CAGAAGGACAAAGAACAGAAGAGAATGGCCCAGCAGCTCCAGCAGCAGATGCAGCAAATCAGCGCAGCATCTGTGTGGGGAAACCTTGCTGGTCTAAATACTCTTGGACCCCAGTATTTAGCACTTTATTTGCAGCTCCTTCAGCAGACTGCCTCCTCTGGGAACCTCAACACCCTGAGCAGCCTCCACCCAATGGGAGGTCCACTGAAATGCACCAAAGAGGAGCACCTCTGTACACAAAGGATG CTX 0.11 LQ 2 Fusion 1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1 NM_001025596,NM_001172639,NM_001172640,NM_006560,NM_198700,NM_001025596,NM_001172639,NM_001172640,NM_006560,NM_198700,NM_001025596,NM_001172639,NM_001172640,NM_006560,NM_198700,NM_001025596,NM_001172639,NM_001172640,NM_006560,NM_198700,NM_001025596,NM_001172639,NM_001172640,NM_006560,NM_198700 256,282,255,252,252,256,282,255,252,252,256,282,255,252,252,256,282,255,252,252,256,282,255,252,252 7,10,7,8,8,7,10,7,8,8,7,10,7,8,8,7,10,7,8,8,7,10,7,8,8 tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 763,841,760,751,751,763,841,760,751,751,763,841,760,751,751,763,841,760,751,751,763,841,760,751,751 66,66,66,66,66,66,66,66,66,66,66,66,66,66,66,66,66,66,66,66,66,66,66,66,66 200,200,200,200,200,200,200,200,200,200,200,200,200,200,200,200,200,200,200,200,200,200,200,200,200 NM_001043351,NM_001043351,NM_001043351,NM_001043351,NM_001043351,NM_001278188,NM_001278188,NM_001278188,NM_001278188,NM_001278188,NM_001278190,NM_001278190,NM_001278190,NM_001278190,NM_001278190,NM_001278191,NM_001278191,NM_001278191,NM_001278191,NM_001278191,NM_153649,NM_153649,NM_153649,NM_153649,NM_153649 223,223,223,223,223,157,157,157,157,157,202,202,202,202,202,133,133,133,133,133,223,223,223,223,223 8,8,8,8,8,7,7,7,7,7,7,7,7,7,7,8,8,8,8,8,8,8,8,8,8 blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat 669,669,669,669,669,471,471,471,471,471,606,606,606,606,606,399,399,399,399,399,669,669,669,669,669 747,747,747,747,747,549,549,549,549,549,684,684,684,684,684,477,477,477,477,477,747,747,747,747,747 68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68,68 204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204,204 QKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALYLQLLQQTASSGNLNTLSSLHPMGGPLKCTKEEHLCTQRM,QKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALYLQLLQQTASSGNLNTLSSLHPMGGPLKCTKEEHLCTQRM,QKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALYLQLLQQTASSGNLNTLSSLHPMGGPLKCTKEEHLCTQRM,QKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALYLQLLQQTASSGNLNTLSSLHPMGGPLKCTKEEHLCTQRM,QKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALYLQLLQQTASSGNLNTLSSLHPMGGPLKCTKEEHLCTQRM,QKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALYLQLLQQTASSGNLNTLSSLHPMGGPLKCTKEEHLCTQRM,QKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALYLQLLQQTASSGNLNTLSSLHPMGGPLKCTKEEHLCTQRM,QKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALYLQLLQQTASSGNLNTLSSLHPMGGPLKCTKEEHLCTQRM,QKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALYLQLLQQTASSGNLNTLSSLHPMGGPLKCTKEEHLCTQRM,QKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALYLQLLQQTASSGNLNTLSSLHPMGGPLKCTKEEHLCTQRM,QKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALYLQLLQQTASSGNLNTLSSLHPMGGPLKCTKEEHLCTQRM,QKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALYLQLLQQTASSGNLNTLSSLHPMGGPLKCTKEEHLCTQRM,QKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALYLQLLQQTASSGNLNTLSSLHPMGGPLKCTKEEHLCTQRM,QKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALYLQLLQQTASSGNLNTLSSLHPMGGPLKCTKEEHLCTQRM,QKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALYLQLLQQTASSGNLNTLSSLHPMGGPLKCTKEEHLCTQRM,QKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALYLQLLQQTASSGNLNTLSSLHPMGGPLKCTKEEHLCTQRM,QKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALYLQLLQQTASSGNLNTLSSLHPMGGPLKCTKEEHLCTQRM,QKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALYLQLLQQTASSGNLNTLSSLHPMGGPLKCTKEEHLCTQRM,QKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALYLQLLQQTASSGNLNTLSSLHPMGGPLKCTKEEHLCTQRM,QKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALYLQLLQQTASSGNLNTLSSLHPMGGPLKCTKEEHLCTQRM,QKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALYLQLLQQTASSGNLNTLSSLHPMGGPLKCTKEEHLCTQRM,QKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALYLQLLQQTASSGNLNTLSSLHPMGGPLKCTKEEHLCTQRM,QKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALYLQLLQQTASSGNLNTLSSLHPMGGPLKCTKEEHLCTQRM,QKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALYLQLLQQTASSGNLNTLSSLHPMGGPLKCTKEEHLCTQRM,QKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALYLQLLQQTASSGNLNTLSSLHPMGGPLKCTKEEHLCTQRM CELF1:NM_001025596[1,7]-TPM3:NM_001043351[8,8];CELF1:NM_001172639[1,10]-TPM3:NM_001043351[8,8];CELF1:NM_001172640[1,7]-TPM3:NM_001043351[8,8];CELF1:NM_006560[1,8]-TPM3:NM_001043351[8,8];CELF1:NM_198700[1,8]-TPM3:NM_001043351[8,8];CELF1:NM_001025596[1,7]-TPM3:NM_001278188[7,7];CELF1:NM_001172639[1,10]-TPM3:NM_001278188[7,7];CELF1:NM_001172640[1,7]-TPM3:NM_001278188[7,7];CELF1:NM_006560[1,8]-TPM3:NM_001278188[7,7];CELF1:NM_198700[1,8]-TPM3:NM_001278188[7,7];CELF1:NM_001025596[1,7]-TPM3:NM_001278190[7,7];CELF1:NM_001172639[1,10]-TPM3:NM_001278190[7,7];CELF1:NM_001172640[1,7]-TPM3:NM_001278190[7,7];CELF1:NM_006560[1,8]-TPM3:NM_001278190[7,7];CELF1:NM_198700[1,8]-TPM3:NM_001278190[7,7];CELF1:NM_001025596[1,7]-TPM3:NM_001278191[8,8];CELF1:NM_001172639[1,10]-TPM3:NM_001278191[8,8];CELF1:NM_001172640[1,7]-TPM3:NM_001278191[8,8];CELF1:NM_006560[1,8]-TPM3:NM_001278191[8,8];CELF1:NM_198700[1,8]-TPM3:NM_001278191[8,8];CELF1:NM_001025596[1,7]-TPM3:NM_153649[8,8];CELF1:NM_001172639[1,10]-TPM3:NM_153649[8,8];CELF1:NM_001172640[1,7]-TPM3:NM_153649[8,8];CELF1:NM_006560[1,8]-TPM3:NM_153649[8,8];CELF1:NM_198700[1,8]-TPM3:NM_153649[8,8] geneB_no_inframe_contig_found geneB_transcripts=NM_001043351,NM_001043352,NM_001043353,NM_001278188,NM_001278189,NM_001278190,NM_001278191,NM_153649;geneb_utr_codons=13 P,P,P,P,P,P,P,P,P,P,P,P,P,P,P,P,P,P,P,P,P,P,P,P,P 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 SJBALL020704_D1 LUC7L3 chr17 48797192 + coding ATF1 chr12 51173923 + coding > 0 1 37 226 0.000 0.000 0 36 0.000 0.167 37 37 CGAGAAGCGCAGCAACGTGCGGTGGGACCACGAGAGCTTGATTATGGAAGATTCCCACAAGAGTACCACGTCAGAGACAGCACCTCAACCTGGTTCAGCAGTTCAGGGAGCTCACATTTCTCATATTGCTCAACAGGTATCATCTTTATCAGAAAGTGAGGAGTCCCAGGACTCATCCGACAGCATAGGCTCCTCACAGAAAGCCCACGGGATCCTAGCACGGCGCCCATCTTACAGAAAAATTTTGAAAGACTTATCTTCTG CTX 0.11 LQ 2 Fusion 1,1 NM_006107,NM_016424 34,34 1,1 tuple,tuple 99,99 11,11 36,36 NM_005171,NM_005171 -1,-1 2,2 tuple,tuple , 816,816 14,14 43,43 EKRSNVRWDHESLIMEDSHKSTTSETAPQPGSAVQGAHISHIAQQVSSLSESEESQDSSDSIGSSQKAHGILARRPSYRKILKDLSS,EKRSNVRWDHESLIMEDSHKSTTSETAPQPGSAVQGAHISHIAQQVSSLSESEESQDSSDSIGSSQKAHGILARRPSYRKILKDLSS LUC7L3:NM_006107[1,1]-ATF1:NM_005171[2,7];LUC7L3:NM_016424[1,1]-ATF1:NM_005171[2,7] geneB_transcripts=NM_005171;geneb_utr_codons=2 LI,LI 1,1 SJBALL020704_D1 HEATR3 chr16 50102782 + coding TOP2B chr3 25661555 - coding > 2 0 72 38 0.000 0.000 61 0 0.042 0.004 73 67 GTTTTGAAGTTTGTGATGACATGGTGACTAAGGATATCATGACCCCTCTGGTTGCGCTGCTAAAAGAGGTATATAAAGAACAGGTTTTAGAACCTATGCTAAAT CTX 0.09 LQ 2 Fusion 1 NM_182922 134 3 perfect 399 21 67 NM_001068 950 23 tuple 2848 4866 22 68 FEVCDDMVTKDIMTPLVALLKEVYKEQVLEPMLN HEATR3:NM_182922[1,3]-TOP2B:NM_001068[23,36] geneB_transcripts=NM_001068 2 SJBALL020704_D1 LRRFIP1 chr2 238662123 + coding CEP85L chr6 118953774 - coding > 0 1 155 86 0.000 0.000 0 54 0.014 0.007 155 154 TGAAGAGAAATATAAGAAGGCTATGGTTTCCAATGCTCAGCTAGACAATGAAAAGACAAACTTCATGTACCAGGTTGATACCCTAAAAGATATGTTGCTGGAGCTTGAAGAACAGCTGGCTGAATCTAGGCGGCAGTACGAAGAGAAAAACAAAGCCCAGATTATTCATCAGCATGGCTACCTGCTAATGAATCATTGTGGCAGGCCACAACTGTTCCATCTAACCATCGAAATAACCATCGTGCCG CTX 0.05 LQ 3 Fusion 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 NM_001137550,NM_001137551,NM_001137552,NM_001137553,NM_004735,NM_001137550,NM_001137551,NM_001137552,NM_001137553,NM_004735,NM_001137550,NM_001137551,NM_001137552,NM_001137553,NM_004735,,, ,,,,,,,,,,,,,,,,, 15,5,8,5,7,15,5,8,5,7,15,5,8,5,7,,, ,,,,,,,,,,,,,,,,, 1038,486,654,486,582,1038,486,654,486,582,1038,486,654,486,582,,, ,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,, NM_001042475,NM_001042475,NM_001042475,NM_001042475,NM_001042475,NM_001178035,NM_001178035,NM_001178035,NM_001178035,NM_001178035,NM_206921,NM_206921,NM_206921,NM_206921,NM_206921,NM_001042475,NM_001178035,NM_206921 25,25,25,25,25,28,28,28,28,28,25,25,25,25,25,25,28,25 2,2,2,2,2,3,3,3,3,3,2,2,2,2,2,,, blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat 74,74,74,74,74,83,83,83,83,83,74,74,74,74,74,74,83,74 2418,2418,2418,2418,2418,2427,2427,2427,2427,2427,1491,1491,1491,1491,1491,2418,2427,1491 52,52,52,52,52,52,52,52,52,52,52,52,52,52,52,,, ,,,,,,,,,,,,,,,,, *REI*EGYGFQCSARQ*KDKLHVPG*YPKRYVAGA*RTAG*I*AAVRREKQSPDYSSAWLPANESLWQATTVPSNHRNNHRA,*REI*EGYGFQCSARQ*KDKLHVPG*YPKRYVAGA*RTAG*I*AAVRREKQSPDYSSAWLPANESLWQATTVPSNHRNNHRA,*REI*EGYGFQCSARQ*KDKLHVPG*YPKRYVAGA*RTAG*I*AAVRREKQSPDYSSAWLPANESLWQATTVPSNHRNNHRA,*REI*EGYGFQCSARQ*KDKLHVPG*YPKRYVAGA*RTAG*I*AAVRREKQSPDYSSAWLPANESLWQATTVPSNHRNNHRA,*REI*EGYGFQCSARQ*KDKLHVPG*YPKRYVAGA*RTAG*I*AAVRREKQSPDYSSAWLPANESLWQATTVPSNHRNNHRA,*REI*EGYGFQCSARQ*KDKLHVPG*YPKRYVAGA*RTAG*I*AAVRREKQSPDYSSAWLPANESLWQATTVPSNHRNNHRA,*REI*EGYGFQCSARQ*KDKLHVPG*YPKRYVAGA*RTAG*I*AAVRREKQSPDYSSAWLPANESLWQATTVPSNHRNNHRA,*REI*EGYGFQCSARQ*KDKLHVPG*YPKRYVAGA*RTAG*I*AAVRREKQSPDYSSAWLPANESLWQATTVPSNHRNNHRA,*REI*EGYGFQCSARQ*KDKLHVPG*YPKRYVAGA*RTAG*I*AAVRREKQSPDYSSAWLPANESLWQATTVPSNHRNNHRA,*REI*EGYGFQCSARQ*KDKLHVPG*YPKRYVAGA*RTAG*I*AAVRREKQSPDYSSAWLPANESLWQATTVPSNHRNNHRA,*REI*EGYGFQCSARQ*KDKLHVPG*YPKRYVAGA*RTAG*I*AAVRREKQSPDYSSAWLPANESLWQATTVPSNHRNNHRA,*REI*EGYGFQCSARQ*KDKLHVPG*YPKRYVAGA*RTAG*I*AAVRREKQSPDYSSAWLPANESLWQATTVPSNHRNNHRA,*REI*EGYGFQCSARQ*KDKLHVPG*YPKRYVAGA*RTAG*I*AAVRREKQSPDYSSAWLPANESLWQATTVPSNHRNNHRA,*REI*EGYGFQCSARQ*KDKLHVPG*YPKRYVAGA*RTAG*I*AAVRREKQSPDYSSAWLPANESLWQATTVPSNHRNNHRA,*REI*EGYGFQCSARQ*KDKLHVPG*YPKRYVAGA*RTAG*I*AAVRREKQSPDYSSAWLPANESLWQATTVPSNHRNNHRA,,, LRRFIP1:NM_001137550[1,15]-CEP85L:NM_001042475[2,13];LRRFIP1:NM_001137551[1,5]-CEP85L:NM_001042475[2,13];LRRFIP1:NM_001137552[1,8]-CEP85L:NM_001042475[2,13];LRRFIP1:NM_001137553[1,5]-CEP85L:NM_001042475[2,13];LRRFIP1:NM_004735[1,7]-CEP85L:NM_001042475[2,13];LRRFIP1:NM_001137550[1,15]-CEP85L:NM_001178035[3,14];LRRFIP1:NM_001137551[1,5]-CEP85L:NM_001178035[3,14];LRRFIP1:NM_001137552[1,8]-CEP85L:NM_001178035[3,14];LRRFIP1:NM_001137553[1,5]-CEP85L:NM_001178035[3,14];LRRFIP1:NM_004735[1,7]-CEP85L:NM_001178035[3,14];LRRFIP1:NM_001137550[1,15]-CEP85L:NM_206921[2,6];LRRFIP1:NM_001137551[1,5]-CEP85L:NM_206921[2,6];LRRFIP1:NM_001137552[1,8]-CEP85L:NM_206921[2,6];LRRFIP1:NM_001137553[1,5]-CEP85L:NM_206921[2,6];LRRFIP1:NM_004735[1,7]-CEP85L:NM_206921[2,6];;; geneB_transcripts=NM_001042475,NM_001178035,NM_206921 ,,,,,,,,,,,,,,,,, 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,,, SJBALL020704_D1 RELB chr19 45532250 + coding TCF3 chr19 1623997 - coding > 1 0 175 46 0.000 0.000 47 0 0.009 0.003 217 219 TTCGGCAAATCCGCAGCTCTGATGTGTTTGTGGATTTCTTGTCATATCGGGACCAGCAGGGACAGATGCGCCGGATGGATCCTGTGCTTTCCGAGCCCGTCTATGACAAGAAATCCACAAACACATCAGAGCTGCGGATTTGCCGAATTAACAAGGAAAGCGGGCCGTGCACCGGTGGCGAGGAGCTCTACTTGCTCTGCGACAAGGTGCAGAAAGAGACGCAGCCCAAGAAGGTCCGGAAGGTCCCGCCGGGTCTTCCATCCT ITX 0.05 LQ 2 Fusion 1,1 NM_006509,NM_006509 332,332 , tuple,tuple , 71,71 217,217 NM_001136139,NM_003200 168,168 7,8 tuple,tuple 502,502 1956,1965 72,72 218,218 RQIRSSDVFVDFLSYRDQQGQMRRMDPVLSEPVYDKKSTNTSELRICRINKESGPCTGGEELYLLCDKVQKETQPKKVRKVPPGLPS,RQIRSSDVFVDFLSYRDQQGQMRRMDPVLSEPVYDKKSTNTSELRICRINKESGPCTGGEELYLLCDKVQKETQPKKVRKVPPGLPS RELB:NM_006509[1,0]-TCF3:NM_001136139[7,19];RELB:NM_006509[1,0]-TCF3:NM_003200[8,19] geneB_transcripts=NM_001136139,NM_003200 , 2,2 SJBALL020704_D1 WNK1 chr12 863491 + coding KDM5A chr12 461493 - coding > 0 2 41 91 0.000 0.000 0 64 0.051 0.013 41 37 CACTGAAACCACCGTGGAAGTCGCCTGGTGTGAACTGCAGGAATGTAGCAAACCTCGAGAAGCCTTTGGATTTGAACAAGCTGTACGAGAGTATACACTTCAGAGCTTTGGAGAGATGGCAGATAATTATGGTTCCCACAGATC ITX 0.03 LQ 2 Fusion 1,1,1,1 NM_001184985,NM_014823,NM_018979,NM_213655 254,254,254,254 1,1,1,1 perfect,perfect,perfect,perfect 759,759,759,759 12,12,12,12 39,39,39,39 NM_001042603,NM_001042603,NM_001042603,NM_001042603 344,344,344,344 9,9,9,9 tuple,tuple,tuple,tuple 1030,1030,1030,1030 5073,5073,5073,5073 13,13,13,13 40,40,40,40 TETTVEVAWCELQECSKPREAFGFEQAVREYTLQSFGEMADNYGSHR,TETTVEVAWCELQECSKPREAFGFEQAVREYTLQSFGEMADNYGSHR,TETTVEVAWCELQECSKPREAFGFEQAVREYTLQSFGEMADNYGSHR,TETTVEVAWCELQECSKPREAFGFEQAVREYTLQSFGEMADNYGSHR WNK1:NM_001184985[1,1]-KDM5A:NM_001042603[9,28];WNK1:NM_014823[1,1]-KDM5A:NM_001042603[9,28];WNK1:NM_018979[1,1]-KDM5A:NM_001042603[9,28];WNK1:NM_213655[1,1]-KDM5A:NM_001042603[9,28] geneB_transcripts=NM_001042603 ,,, 1,1,1,1 SJBALL020704_D1 RUNX1 chr21 36265222 - coding MLLT10 chr10 21827761 + coding > 0 2 34 82 0.000 0.000 0 49 0.050 0.053 34 33 ATACTTGGAATGAATCCTTCTAGAGACGTCCACGCTTGCTATGGCATTGTTCAAGTACCCACTGGACCGTGGTTTTGCAGGAAATGTGAATCTCAGGAGAGAGCAGCCAGAGTGGG CTX 0.01 LQ 3 Fusion 1,1,1,1,1 NM_001754,NM_001754,NM_001754,NM_001754,NM_001754 33,33,33,33,33 3,3,3,3,3 perfect,perfect,perfect,perfect,perfect 97,97,97,97,97 10,10,10,10,10 32,32,32,32,32 NM_001195626,NM_001195627,NM_001195628,NM_001195630,NM_004641 54,54,54,54,54 2,3,3,3,3 tuple,tuple,tuple,tuple,tuple 161,161,161,161,161 3207,381,540,540,3084 11,11,11,11,11 33,33,33,33,33 ILGMNPSRDVHACYGIVQVPTGPWFCRKCESQERAARV,ILGMNPSRDVHACYGIVQVPTGPWFCRKCESQERAARV,ILGMNPSRDVHACYGIVQVPTGPWFCRKCESQERAARV,ILGMNPSRDVHACYGIVQVPTGPWFCRKCESQERAARV,ILGMNPSRDVHACYGIVQVPTGPWFCRKCESQERAARV RUNX1:NM_001754[1,3]-MLLT10:NM_001195626[2,22];RUNX1:NM_001754[1,3]-MLLT10:NM_001195627[3,5];RUNX1:NM_001754[1,3]-MLLT10:NM_001195628[3,4];RUNX1:NM_001754[1,3]-MLLT10:NM_001195630[3,4];RUNX1:NM_001754[1,3]-MLLT10:NM_004641[3,24] geneB_transcripts=NM_001195626,NM_001195627,NM_001195628,NM_001195630,NM_004641 ,,,, 0,0,0,0,0 SJBALL020704_D1 KMT2C chr7 152055671 - coding NRF1 chr7 129394860 + coding > 2 0 91 36 0.000 0.100 61 0 0.020 0.017 120 120 GCCACCGGCAGCAGCAGCACCACCGGACGACCTCGAAGTAGGGGGAAAACTGCAGTGGAAGATGAGGACAGCATGGATGGGCTGGAGACAACAGAAACAGAAACGATTGTGGAAACAGGCCTGGTCCAGATCCCTGTGAGCATGTACCAGACTGT ITX 0.01 LQ 2 Fusion 1,1,1,1 NM_170606,NM_170606,NM_170606,NM_170606 84,84,84,84 2,2,2,2 tuple,tuple,tuple,tuple 250,250,250,250 38,38,38,38 116,116,116,116 NM_001040110,NM_001293163,NM_001293164,NM_005011 451,470,290,451 11,12,10,11 tuple,tuple,tuple,tuple 1351,1408,868,1351 1512,1569,1029,1512 40,40,40,40 120,120,120,120 ATGSSSTTGRPRSRGKTAVEDEDSMDGLETTETETIVETGLVQIPVSMYQT,ATGSSSTTGRPRSRGKTAVEDEDSMDGLETTETETIVETGLVQIPVSMYQT,ATGSSSTTGRPRSRGKTAVEDEDSMDGLETTETETIVETGLVQIPVSMYQT,ATGSSSTTGRPRSRGKTAVEDEDSMDGLETTETETIVETGLVQIPVSMYQT KMT2C:NM_170606[1,2]-NRF1:NM_001040110[11,11];KMT2C:NM_170606[1,2]-NRF1:NM_001293163[12,12];KMT2C:NM_170606[1,2]-NRF1:NM_001293164[10,10];KMT2C:NM_170606[1,2]-NRF1:NM_005011[11,11] geneB_transcripts=NM_001040110,NM_001293163,NM_001293164,NM_005011 G,G,G,G 0,0,0,0 SJBALL020704_D1 TMEM87A chr15 42525144 + intron MALAT1 chr11 65267253 + 5utr > 2 0 84 43 0.000 0.000 51 0 0.009 0.000 85 75 GTATGACTCCAAAGTCTGCCATTTACACAAGAATTTCAGTCTGGATTTCAGTCTGGATTCCATTGATTAGAAAAAGAAGAAAAAAAGACAAGCTAGGAAACAAAAAGCTAAGGGCAAA CTX 0.01 LQ 3 other , NM_001286487,NM_015497 , , , , , , , , , , , , , , , ; geneB_no_transcripts , , SJBALL020704_D1 PRKAA1 chr5 40764616 - coding EIF4A2 chr3 186506913 + coding > 3 0 129 37 0.000 0.657 58 0 0.035 0.000 130 129 AGGTTGTAAACCCATATTATTTGCGTGTACGAAGGAAGAATCCTGTGACAAGCACTTACTCCAAAATGAGTCTACAGTTATACCAAGTGGATAGTAGAACTTATCTACTGGATTTCCGTAGTATTGATGAATTGGCAGAGGGGGTCGATTTGGGAGGAAAGGTGT CTX 0.01 LQ 3 Fusion 0,0,0 NM_006251,NM_206907, ,, 8,9, ,, 1435,1480, ,, ,, NM_001967,NM_001967,NM_001967 360,360,360 11,11, blat,blat,blat 1080,1080,1080 1224,1224,1224 40,40, ,, GCKPILFACTKEESCDKHLLQNESTVIPSG**NLSTGFP*Y**IGRGGRFGRKG,GCKPILFACTKEESCDKHLLQNESTVIPSG**NLSTGFP*Y**IGRGGRFGRKG, PRKAA1:NM_006251[1,8]-EIF4A2:NM_001967[11,11];PRKAA1:NM_206907[1,9]-EIF4A2:NM_001967[11,11]; geneB_transcripts=NM_001967 ,, 1,1, SJBALL020704_D1 SLC7A5 chr16 87885328 - coding BRD1 chr22 50217980 - 5utr > 0 3 30 79 0.000 0.000 0 76 0.085 0.184 32 29 ATCTGCTGGGCTTCGTCCAGATCGGGAAGGGTAATCATTACCAAATGAGGAGGAAAGGACGATGTCATCGAGGCTCTGCAGCGAGGCATCCTTCTTCCCCATGCAGTG CTX 0.01 LQ 2 Fusion 1 NM_003486 223 2 tuple 664 9 31 NM_014577 -4 1 tuple 3177 12 38 LLGFVQIGKGNHYQMRRKGRCHRGSAARHPSSPCS SLC7A5:NM_003486[1,2]-BRD1:NM_014577[1,12] geneB_transcripts=NM_014577;geneb_utr_codons=5;reannotated geneA from SLC7A5,MIR6775 to SLC7A5 NH 2 SJBALL020704_D1 HIF1A chr14 62203827 + coding EIF4A1 chr17 7480373 + coding > 0 2 192 227 0.000 0.660 0 56 0.008 0.005 192 191 CCCTTCAACAAACAGAATGTGTCCTTAAACCGGTTGAATCTTCAGATATGAAAATGACTCAGCTATTCACCAAAGTTGAATCAGAAGATACAAGTAGCCTCTTTGACAAACTTAAGAAGGAACCTGATGCTTTAACTTTGCTGGCCCCAGCCGCTGGAGACACAATCATATCTTTAGATTTTGGCAGCAACGCCCCCAAATACATCAAGATGTTTGTACTGGATGAAGCTGACGAAATGTTAAGCCGTGGATTCAAGGACCAGATCTATGACATATTCCAAAAGCTCAACAGCAACACCCAGGTAGTTTTGCTGTCAGCCACAATGCCTTCTGATGTGCTTGAGGTGACCAAGAAGTTCATGAGGGACCCCATTCGGATTCTTGTCAAGAAGGAAGAGTTGACCCTGGAGGGTATCCG CTX 0.01 LQ 2 Fusion 1,1,1,1,1,1 NM_001243084,NM_001530,NM_181054,NM_001243084,NM_001530,NM_181054 441,417,417,441,417,417 9,9,9,9,9,9 tuple,tuple,tuple,tuple,tuple,tuple 1321,1249,1249,1321,1249,1249 62,62,62,62,62,62 190,190,190,190,190,190 NM_001204510,NM_001204510,NM_001204510,NM_001416,NM_001416,NM_001416 172,172,172,172,172,172 6,6,6,6,6,6 blat,blat,blat,blat,blat,blat 515,515,515,515,515,515 1044,1044,1044,1221,1221,1221 64,64,64,64,64,64 194,194,194,194,194,194 LQQTECVLKPVESSDMKMTQLFTKVESEDTSSLFDKLKKEPDALTLLAPAAGDTIISLDFGSNAPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGI,LQQTECVLKPVESSDMKMTQLFTKVESEDTSSLFDKLKKEPDALTLLAPAAGDTIISLDFGSNAPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGI,LQQTECVLKPVESSDMKMTQLFTKVESEDTSSLFDKLKKEPDALTLLAPAAGDTIISLDFGSNAPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGI,LQQTECVLKPVESSDMKMTQLFTKVESEDTSSLFDKLKKEPDALTLLAPAAGDTIISLDFGSNAPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGI,LQQTECVLKPVESSDMKMTQLFTKVESEDTSSLFDKLKKEPDALTLLAPAAGDTIISLDFGSNAPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGI,LQQTECVLKPVESSDMKMTQLFTKVESEDTSSLFDKLKKEPDALTLLAPAAGDTIISLDFGSNAPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGI HIF1A:NM_001243084[1,9]-EIF4A1:NM_001204510[6,11];HIF1A:NM_001530[1,9]-EIF4A1:NM_001204510[6,11];HIF1A:NM_181054[1,9]-EIF4A1:NM_001204510[6,11];HIF1A:NM_001243084[1,9]-EIF4A1:NM_001416[6,11];HIF1A:NM_001530[1,9]-EIF4A1:NM_001416[6,11];HIF1A:NM_181054[1,9]-EIF4A1:NM_001416[6,11] geneB_transcripts=NM_001204510,NM_001416;reannotated geneB from SENP3,SENP3-EIF4A1,EIF4A1 to EIF4A1 A,A,A,A,A,A 2,2,2,2,2,2 SJBALL020704_D1 TNRC18 chr7 5391445 - coding ATRNL1 chr10 117027817 + coding > 0 2 34 86 0.000 0.000 1 38 0.000 0.071 36 27 CGACTCTTCGGAGGAATCGTTTGACCAAGATGTTACAGATATGCAGATTGTGCCAGCTGTACTGCCAATACAAATGGGTGCCAATGGTGTGATGACAAGAAATGCATTTCGGCGG CTX 0.01 LQ 3 Fusion 0,0 NM_001080495, , 17, , 5470, , , NM_207303,NM_207303 666,666 13, tuple,tuple 1996,1996 4140,4140 9, , RLFGGIV*PRCYRYADCASCTANTNGCQWCDDKKCISA, TNRC18:NM_001080495[1,17]-ATRNL1:NM_207303[13,29]; upstream_AA_too_short_to_anchor_to_geneA geneB_transcripts=NM_207303 , 0, SJBALL020704_D1 ADAM10 chr15 58971324 - coding RNF111 chr15 59323003 + 5utr > 0 2 32 76 0.030 0.000 0 55 0.000 0.067 32 32 TCACTCTGTCATTTATCATGAAGATGATATTAGCTTTCCTTAAAGTTTCCCATGTCTCAATGGACTCCTGAATATAACGAGCTCTACACCTTAAAAGTGGATATGAAG ITX 0.01 LQ 2 upTSS 0,0,0,0,2,2,2,2 NM_001110,NM_001110,NM_001110,NM_001110,,,, ,,,,,,, 4,4,4,4,,,, ,,,,,,, 483,483,483,483,,,, ,,,,,,, ,,,,,,, NM_001270528,NM_001270529,NM_001270530,NM_017610,NM_001270528,NM_001270529,NM_001270530,NM_017610 -6,-6,-6,-6,-6,-6,-6,-6 2,2,2,2,,,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple ,,,,,,, 2988,2958,2985,2961,2988,2958,2985,2961 13,13,13,13,,,, ,,,,,,, SLCHLS*R*Y*LSLKFPMSQWTPEYNELYTLKVDMK,SLCHLS*R*Y*LSLKFPMSQWTPEYNELYTLKVDMK,SLCHLS*R*Y*LSLKFPMSQWTPEYNELYTLKVDMK,SLCHLS*R*Y*LSLKFPMSQWTPEYNELYTLKVDMK,,,, ADAM10:NM_001110[1,4]-RNF111:NM_001270528[2,14];ADAM10:NM_001110[1,4]-RNF111:NM_001270529[2,14];ADAM10:NM_001110[1,4]-RNF111:NM_001270530[2,14];ADAM10:NM_001110[1,4]-RNF111:NM_017610[2,14];;;; geneB_transcripts=NM_001270528,NM_001270529,NM_001270530,NM_017610;geneb_utr_codons=7 ,,,,,,, 0,0,0,0,,,, SJBALL020704_D1 KIFC3 chr16 57831983 - coding FUS chr16 31199647 + coding > 1 0 130 32 0.000 0.030 31 0 0.087 0.018 131 131 TCGCTGCGGGGCCTGTGGAGAGTGGGCCGGGCCCCGGAGCCCGAGCCTGGGATGGCTCGCCCCGCCCCAGCCCCAGCCAGCCCGGCCGCCCGCCCTTTCCCACACACCGGCCCGGGGAGGTTGAGAACTGGCCCTCGGGACCAAGGATCACGTCATGACTCC ITX 0.00 LQ 2 Fusion 1,1,1,1,1,1 NM_001130100,NM_005550,NM_001130100,NM_005550,NM_001130100,NM_005550 58,58,58,58,58,58 2,2,2,2,2,2 perfect,perfect,perfect,perfect,perfect,perfect 172,172,172,172,172,172 42,42,42,42,42,42 128,128,128,128,128,128 NM_001170634,NM_001170634,NM_001170937,NM_001170937,NM_004960,NM_004960 266,266,263,263,267,267 8,8,8,8,8,8 tuple,tuple,tuple,tuple,tuple,tuple 798,798,789,789,801,801 1578,1578,1569,1569,1581,1581 43,43,43,43,43,43 129,129,129,129,129,129 SLRGLWRVGRAPEPEPGMARPAPAPASPAARPFPHTGPGRLRTGPRDQGSRHDS,SLRGLWRVGRAPEPEPGMARPAPAPASPAARPFPHTGPGRLRTGPRDQGSRHDS,SLRGLWRVGRAPEPEPGMARPAPAPASPAARPFPHTGPGRLRTGPRDQGSRHDS,SLRGLWRVGRAPEPEPGMARPAPAPASPAARPFPHTGPGRLRTGPRDQGSRHDS,SLRGLWRVGRAPEPEPGMARPAPAPASPAARPFPHTGPGRLRTGPRDQGSRHDS,SLRGLWRVGRAPEPEPGMARPAPAPASPAARPFPHTGPGRLRTGPRDQGSRHDS KIFC3:NM_001130100[1,2]-FUS:NM_001170634[8,15];KIFC3:NM_005550[1,2]-FUS:NM_001170634[8,15];KIFC3:NM_001130100[1,2]-FUS:NM_001170937[8,15];KIFC3:NM_005550[1,2]-FUS:NM_001170937[8,15];KIFC3:NM_001130100[1,2]-FUS:NM_004960[8,15];KIFC3:NM_005550[1,2]-FUS:NM_004960[8,15] geneB_transcripts=NM_001170634,NM_001170937,NM_004960;reannotated geneA from KIFC3,MIR6772 to KIFC3 ,,,,, 0,0,0,0,0,0 SJBALL020704_D1 PTCH1 chr9 98268688 - coding PBX3 chr9 128510831 + coding > 2 0 85 34 0.000 0.081 48 0 0.034 0.046 86 86 TGGGCCTCCTCATATTTGGGGCCTTCGCGGTGGGATTAAAAGCAGCGAACCTCGAGACCAACGTGGAGGAGCTGTGGGTGGAAGGAAACATGCCCTGAACTGTCACAGAATGAAACCAG ITX 0.00 LQ 3 Fusion 0,0,0,0,0,0,0,0 NM_000264,NM_001083602,NM_001083603,NM_001083604,NM_001083605,NM_001083606,NM_001083607, ,,,,,,, 2,2,2,2,2,2,2, ,,,,,,, 394,196,391,,,,, ,,,,,,, ,,,,,,, NM_006195,NM_006195,NM_006195,NM_006195,NM_006195,NM_006195,NM_006195,NM_006195 68,68,68,68,68,68,68,68 2,2,2,2,2,2,2, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 203,203,203,203,203,203,203,203 1305,1305,1305,1305,1305,1305,1305,1305 28,28,28,28,28,28,28, ,,,,,,, GPPHIWGLRGGIKSSEPRDQRGGAVGGRKHALNCHRMKP,GPPHIWGLRGGIKSSEPRDQRGGAVGGRKHALNCHRMKP,GPPHIWGLRGGIKSSEPRDQRGGAVGGRKHALNCHRMKP,GPPHIWGLRGGIKSSEPRDQRGGAVGGRKHALNCHRMKP,GPPHIWGLRGGIKSSEPRDQRGGAVGGRKHALNCHRMKP,GPPHIWGLRGGIKSSEPRDQRGGAVGGRKHALNCHRMKP,GPPHIWGLRGGIKSSEPRDQRGGAVGGRKHALNCHRMKP, PTCH1:NM_000264[1,2]-PBX3:NM_006195[2,9];PTCH1:NM_001083602[1,2]-PBX3:NM_006195[2,9];PTCH1:NM_001083603[1,2]-PBX3:NM_006195[2,9];PTCH1:NM_001083604[1,2]-PBX3:NM_006195[2,9];PTCH1:NM_001083605[1,2]-PBX3:NM_006195[2,9];PTCH1:NM_001083606[1,2]-PBX3:NM_006195[2,9];PTCH1:NM_001083607[1,2]-PBX3:NM_006195[2,9]; geneB_no_inframe_contig_found geneB_transcripts=NM_001134778,NM_006195;geneb_utr_codons=8 ,,,,,,, 1,1,1,1,1,1,1, SJBALL020704_D1 TPM4 chr19 16187508 + coding BCL7A chr12 122468606 + coding > 4 3 75 32 0.650 0.000 79 57 0.038 0.000 76 75 AGGCGGACGAGGCGGAAGACCGCGCGCAGGGCCTGCAGCGGGAGCTGGACGGCGAGCGCGAGCGGCGCGAGAAAGGAGAAGAAATGGGTGACCGTTGGTGACACAT CTX 0.00 LQ 3 Fusion 0,0,0,0,0,0 NM_001145160,NM_003290,NM_001145160,NM_003290,, ,,,,, 2,1,2,1,, ,,,,, ,132,,132,, ,,,,, ,,,,, NM_001024808,NM_001024808,NM_020993,NM_020993,NM_001024808,NM_020993 31,31,31,31,31,31 2,2,2,2,, blat,blat,blat,blat,blat,blat 93,93,93,93,93,93 633,633,696,696,633,696 25,25,25,25,, ,,,,, RRTRRKTARRACSGSWTASASGARKEKKWVTVGDT,RRTRRKTARRACSGSWTASASGARKEKKWVTVGDT,RRTRRKTARRACSGSWTASASGARKEKKWVTVGDT,RRTRRKTARRACSGSWTASASGARKEKKWVTVGDT,, TPM4:NM_001145160[1,2]-BCL7A:NM_001024808[2,6];TPM4:NM_003290[1,1]-BCL7A:NM_001024808[2,6];TPM4:NM_001145160[1,2]-BCL7A:NM_020993[2,6];TPM4:NM_003290[1,1]-BCL7A:NM_020993[2,6];; geneB_transcripts=NM_001024808,NM_020993 ,,,,, 0,0,0,0,, SJBALL020704_D1 MALAT1 chr11 65272490 + 5utr ACSL3 chr2 223773632 + coding > 0 2 37 80 0.000 0.000 0 54 0.016 0.014 37 35 CAGTTGAATTCACCAGTGGACAAAATGAGGAAAACAGACAAGAAAAATCAAACCGAATTAAAGCAAAGCCTGTAAATTCAAAACCTGATTCTGCATACAGATCTGTTAATAGTTT CTX 0.00 LQ 3 NLoss 0,0 , , , , , , , NM_004457,NM_203372 48,48 , tuple,tuple 142,142 2163,2163 , , , ; geneA_no_transcript_IDs_found geneB_transcripts=NM_004457,NM_203372 , , SJBALL020704_D1 MGME1 chr20 17951015 + coding RC3H2 chr9 125652824 - coding > 0 2 36 87 0.000 0.000 0 48 0.000 0.011 36 34 CTGGGAGAAGATGGCTTTAAAGAATACACTTCAAGTGTAGCTAGCTTGAACCAGAGTGCACTGAGCCGTCCAATGCAAAGGAAACTGGTGACACTTGTAAACTGTCAACTGGTGGAGGAAG CTX 0.00 LQ 2 Fusion 1,1 NM_052865,NM_052865 171,171 2,2 tuple,tuple 511,511 10,10 32,32 NM_001100588,NM_018835 117,117 4,4 blat,blat 350,350 3576,3195 12,12 36,36 LGEDGFKEYTSSVASLNQSALSRPMQRKLVTLVNCQLVEE,LGEDGFKEYTSSVASLNQSALSRPMQRKLVTLVNCQLVEE MGME1:NM_052865[1,2]-RC3H2:NM_001100588[4,21];MGME1:NM_052865[1,2]-RC3H2:NM_018835[4,18] geneB_transcripts=NM_001100588,NM_018835 S,S 0,0 SJBALL020704_D1 SENP2 chr3 185331197 + coding EIF4A2 chr3 186504916 + coding > 2 2 64 47 0.000 0.750 65 12 0.000 0.005 84 84 CATTGAGAAGTGAAAAGATGTGTTCAAAGGGGAAAATTACTGATACAGAGAAGATGGTCGGAATCAGATTTGAAAATGAAAGTGAATGGAAGTTGGATACACTTTGTGACTTGTACGAGACACTGACCAT DEL 0.00 LQ 2 Fusion 1 NM_021627 312 10 tuple 933 26 82 NM_001967 258 8 tuple 772 1224 27 83 LRSEKMCSKGKITDTEKMVGIRFENESEWKLDTLCDLYETLT SENP2:NM_021627[1,10]-EIF4A2:NM_001967[8,11] geneB_transcripts=NM_001967 2 SJBALL020704_D1 RNF213 chr17 78268647 - coding BCL9L chr11 118770173 - coding ? 2 0 88 34 0.000 0.000 37 0 0.024 0.000 89 81 AGGACAAAGCAAAACTGCTCGAACTGGGTGAAGAAGCTGTTCAGGTTGATGGTGTCCCAGGTCTGCAGGATGCTGAAGGTGCTGCCCAGAGCCCTATGGGCATGAACCTGCCAG CTX 0.00 LQ 3 Fusion unhandled orientation ? SJBALL020704_D1 GAB2 chr11 78128688 - coding GPBP1L1 chr1 46126897 - 5utr > 0 2 36 119 0.000 0.000 0 55 0.014 0.010 37 32 AATCGCCTCCCGAGAAGAAGTTGAGGCGCTATAGTGATAGATTCGTGTGGCCTTTCAAATGATTGTGAAGTGGTGGAAATGGATCCAAAATAATAAGTGACTTCTCTACCAAAGCATAGAAGATTCTTCATATCTCCTTCCAGTGGCTCAA CTX 0.00 LQ 3 CLoss 0,3 NM_080491, , 1, , 75, , , NM_021639,NM_021639 -365,-365 3, tuple,tuple , 1425,1425 13, , IASREEVEAL***IRVAFQMIVKWWKWIQNNK*LLYQSIEDSSYLLPVAQ, GAB2:NM_080491[1,1]-GPBP1L1:NM_021639[3,13]; geneB_transcripts=NM_021639;geneb_utr_codons=13 , 1, SJBALL020704_D1 AMFR chr16 56419829 - coding PAFAH1B2 chr11 117034485 + coding > 0 2 32 78 0.000 0.000 0 50 0.000 0.007 32 29 CAGGCCAGCAACTCCCAGCTCAATGCAATGGTCATTGTTGTCTGGGTAGGAACAAATAACCACGAAAATACAGCAGAAGAAGTAGCAGGTGGGATCGAGGCCATTGT CTX 0.00 LQ 2 Fusion 1,1,1,1 NM_001144,NM_001144,NM_001144,NM_001144 461,461,461,461 10,10,10,10 perfect,perfect,perfect,perfect 1380,1380,1380,1380 9,9,9,9 29,29,29,29 NM_001184746,NM_001184747,NM_001184748,NM_002572 97,97,97,97 5,5,5,5 tuple,tuple,tuple,tuple 289,289,289,289 609,468,399,690 10,10,10,10 30,30,30,30 QASNSQLNAMVIVVWVGTNNHENTAEEVAGGIEAI,QASNSQLNAMVIVVWVGTNNHENTAEEVAGGIEAI,QASNSQLNAMVIVVWVGTNNHENTAEEVAGGIEAI,QASNSQLNAMVIVVWVGTNNHENTAEEVAGGIEAI AMFR:NM_001144[1,10]-PAFAH1B2:NM_001184746[5,7];AMFR:NM_001144[1,10]-PAFAH1B2:NM_001184747[5,6];AMFR:NM_001144[1,10]-PAFAH1B2:NM_001184748[5,6];AMFR:NM_001144[1,10]-PAFAH1B2:NM_002572[5,6] geneB_transcripts=NM_001184746,NM_001184747,NM_001184748,NM_002572 ,,, 0,0,0,0 SJBALL020704_D1 RALGDS chr9 136002105 + intron FUS chr16 31201703 + coding > 0 1 35 155 0.000 0.000 1 36 0.000 0.006 37 37 CGTGGAGGGAAGCAGAGGAGGAAGAGATGGAGGGGGATGGAAGTGTCCTAATCCGTGAGTGAAACTTAATTTTTTTCTTAGTTCTCTTGCATGCGTGCTCTTTGATATATTGGTACTGAGGTATGTGCGTGTTTTCCAAAGAAGTAAATGTCAAGGCCACACTGTTGGGGTCAGATTTAGCCAAAAGCTTAC CTX 0.00 LQ 3 NLoss ,,,,,,,, NM_001042368,NM_001042368,NM_001042368,NM_001271774,NM_001271774,NM_001271774,NM_001271775,NM_001271775,NM_001271775 ,,,,,,,, ,,,,,,,, ,,,,,,,, ,,,,,,,, ,,,,,,,, ,,,,,,,, NM_001170634,NM_001170937,NM_004960,NM_001170634,NM_001170937,NM_004960,NM_001170634,NM_001170937,NM_004960 ,,,,,,,, ,,,,,,,, ,,,,,,,, 1273,1264,1276,1273,1264,1276,1273,1264,1276 1578,1569,1581,1578,1569,1581,1578,1569,1581 ,,,,,,,, ,,,,,,,, ,,,,,,,, ;;;;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001170634,NM_001170937,NM_004960 ,,,,,,,, ,,,,,,,, SJBALL020704_D1 RANBP17 chr5 170386924 - intron EBF1 chr5 158139914 - intron ? 0 5 33 152 0.970 0.000 1 185 0.000 0.016 35 64 TTGAACTACACAGGTTTGAACTGTGCAGGTCCACTAACACGTGAATGTTCCACACATGTGAAACATGAACAATTTTTACATTAAAAAATTATTTTCATCCCAAAAGGGAGATTCTTAGTTTGTGTGTATAAGATATTATTGTACAATATTGGTCCTAGCTATCATTCGGGTAATCTAATATAGAGGGCTAGAAAGGATGCATGCATTTAGCCATCT DEL 0.00 LQ 3 other unhandled orientation ? SJBALL020704_D1 TRIM52 chr5 180686996 - coding ZEB2 chr2 145154162 - coding > 0 1 39 122 0.000 0.000 1 30 0.000 0.004 39 31 GCTGCCTTTGGAGGAGGTGGTGCAGGAGTACCAGGGAGAATTGCTTGATGGAGCACAAGACTACATGTCAGGCCTAGATGATATGACAGACTCCGACTCCTGTCTGTCTCGCAAAAAGATCAAGAAGACAGAGAGTGGCATGTATGCATGTGA CTX 0.00 LQ 2 Fusion 1,1 NM_032765,NM_032765 272,272 1,1 perfect,perfect 813,813 10,10 33,33 NM_001171653,NM_014795 939,963 8,9 tuple,tuple 2815,2887 3573,3645 11,11 34,34 LPLEEVVQEYQGELLDGAQDYMSGLDDMTDSDSCLSRKKIKKTESGMYAC,LPLEEVVQEYQGELLDGAQDYMSGLDDMTDSDSCLSRKKIKKTESGMYAC TRIM52:NM_032765[1,1]-ZEB2:NM_001171653[8,9];TRIM52:NM_032765[1,1]-ZEB2:NM_014795[9,10] geneB_transcripts=NM_001171653,NM_014795 , 1,1 SJBALL020704_D1 CBFA2T3 chr16 89007426 - 5utr TCF3 chr19 1632404 - coding > 0 3 36 72 0.000 0.486 0 78 0.160 0.000 36 34 CCGCCGCCCGCCGGATCCCCCGGACCCCCCGACCGTCTTGAGGACCGGCCCAGCTCAGGCTCCTGGGGCAGCGGCGACCAGAGCAGCTCCTCCTTTGACCCCAGCC CTX 0.00 LQ 3 NLoss 0,0,0,0,0,0,0,0 NM_001290330,NM_005187,NM_175931,NM_001290330,NM_005187,NM_175931,, ,,,,,,, 1,1,1,1,1,1,, ,,,,,,, ,151,,,151,,, ,,,,,,, ,,,,,,, NM_001136139,NM_001136139,NM_001136139,NM_003200,NM_003200,NM_003200,NM_001136139,NM_003200 49,49,49,49,49,49,49,49 3,3,3,4,4,4,, blat,blat,blat,blat,blat,blat,blat,blat 146,146,146,146,146,146,146,146 1956,1956,1956,1965,1965,1965,1956,1965 12,12,12,12,12,12,, ,,,,,,, PPPAGSPGPPDRLEDRPSSGSWGSGDQSSSSFDPS,PPPAGSPGPPDRLEDRPSSGSWGSGDQSSSSFDPS,PPPAGSPGPPDRLEDRPSSGSWGSGDQSSSSFDPS,PPPAGSPGPPDRLEDRPSSGSWGSGDQSSSSFDPS,PPPAGSPGPPDRLEDRPSSGSWGSGDQSSSSFDPS,PPPAGSPGPPDRLEDRPSSGSWGSGDQSSSSFDPS,, LOC100129697:NM_001290330[1,1]-TCF3:NM_001136139[3,19];CBFA2T3:NM_005187[1,1]-TCF3:NM_001136139[3,19];CBFA2T3:NM_175931[1,1]-TCF3:NM_001136139[3,19];LOC100129697:NM_001290330[1,1]-TCF3:NM_003200[4,19];CBFA2T3:NM_005187[1,1]-TCF3:NM_003200[4,19];CBFA2T3:NM_175931[1,1]-TCF3:NM_003200[4,19];; geneB_transcripts=NM_001136139,NM_003200 ,,,,,,, 0,0,0,0,0,0,, SJBALL020704_D1 CD81 chr11 2398847 + coding SKI chr1 2234416 + coding > 0 4 32 84 0.000 0.000 0 81 0.069 0.000 32 29 CTGCTCTTCGTCTTCAATTTCGTCTTCTGGGTCTCCTCTGAGCCTCCGGCCTCCATAAGACCCAAAACAGATGACACCTCTTCCCAGTCCCCCGCGCCTTCCGAAAAGGACAA CTX 0.00 LQ 2 Fusion 0,1 NM_001297649,NM_004356 ,23 1,1 ,perfect ,66 ,9 ,29 NM_003036,NM_003036 324,324 2,2 tuple,tuple 970,970 2187,2187 10,10 ,30 LLFVFNFVFWVSSEPPASIRPKTDDTSSQSPAPSEKD,LLFVFNFVFWVSSEPPASIRPKTDDTSSQSPAPSEKD CD81:NM_001297649[1,1]-SKI:NM_003036[2,7];CD81:NM_004356[1,1]-SKI:NM_003036[2,7] geneB_transcripts=NM_003036 , 0,0 SJBALL020704_D1 MED13L chr12 116714864 - coding ZMIZ1 chr10 80878671 + 5utr > 0 2 171 259 0.000 0.000 0 64 0.021 0.000 171 169 CCCGCGCTCCCCGGCGAGGCGCCGCCGCCCGGCCCGGCCTCGCCTCGGACGCCTCGCTCCGACATGCCCCGCTCTGGCGGCCGGGCTCGCGGAGGATCATGACTGCGGCAGCGAACTGGGTGGCGAACGGGGCGAGCCTGGAGGATTGTCACTCCAACCTCTTTTCGCTGGACTCACGGCAGCTGTGTTCTGATTTCGTACTACTGCTGGGGCTGCCACCTCCTCCTCCAGACGCTCTCAGCAGACTTGAGTCCTGGTCCTTCTGCAGAGGCCTGAGCAGGAGGAAGAGGAGGAGGCCCGTTGGCGTCGGACCAATGCTGCAAGGGGTGTGAGGAGAGGAGCCGCTGTTTTTCACTGAGCTGCCATACCCCGAAAGCAGGATGGAGCTGGAGTGAGGTGGAGGGGCCGCAAGCTGCTGACCGGCGTGT CTX 0.00 LQ 2 Fusion 1 NM_015335 25 1 tuple 72 55 169 NM_020338 -111 2 tuple 3204 59 179 RAPRRGAAARPGLASDASLRHAPLWRPGSRRIMTAAANWVANGASLEDCHSNLFSLDSRQLCSDFVLLLGLPPPPPDALSRLESWSFCRGLSRRKRRRPVGVGPMLQGV*GEEPLFFTELPYPESRMELE*GGGAASC*PAC MED13L:NM_015335[1,1]-ZMIZ1:NM_020338[2,25] geneB_transcripts=NM_020338;geneb_utr_codons=13 DSR 2 SJBALL020704_D1 FAM107B chr10 14563884 - coding MLLT10 chr10 21940629 + coding > 0 2 31 69 0.139 0.000 0 52 0.000 0.000 31 31 TGACTTGGAAATAGAGCTATTAAAACGGCAGCAGAAACACAAGAAGCAGCCAGAACCATCACCTGCATTGGTTCCATCCTTGACTGTTACTACAGAAAAAACAGCCCAC ITX 0.00 LQ 2 Fusion 1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1 NM_001282695,NM_001282696,NM_001282697,NM_001282698,NM_001282699,NM_001282700,NM_001282701,NM_001282702,NM_001282703,NM_031453,NM_001282695,NM_001282696,NM_001282697,NM_001282698,NM_001282699,NM_001282700,NM_001282701,NM_001282702,NM_001282703,NM_031453 89,89,89,89,89,89,89,89,89,264,89,89,89,89,89,89,89,89,89,264 5,4,3,4,3,3,3,4,3,4,5,4,3,4,3,3,3,4,3,4 perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect 263,263,263,263,263,263,263,263,263,788,263,263,263,263,263,263,263,263,263,788 9,9,9,9,9,9,9,9,9,9,9,9,9,9,9,9,9,9,9,9 30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30 NM_001195626,NM_001195626,NM_001195626,NM_001195626,NM_001195626,NM_001195626,NM_001195626,NM_001195626,NM_001195626,NM_001195626,NM_004641,NM_004641,NM_004641,NM_004641,NM_004641,NM_004641,NM_004641,NM_004641,NM_004641,NM_004641 243,243,243,243,243,243,243,243,243,243,243,243,243,243,243,243,243,243,243,243 8,8,8,8,8,8,8,8,8,8,9,9,9,9,9,9,9,9,9,9 tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 727,727,727,727,727,727,727,727,727,727,727,727,727,727,727,727,727,727,727,727 3207,3207,3207,3207,3207,3207,3207,3207,3207,3207,3084,3084,3084,3084,3084,3084,3084,3084,3084,3084 10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10 31,31,31,31,31,31,31,31,31,31,31,31,31,31,31,31,31,31,31,31 DLEIELLKRQQKHKKQPEPSPALVPSLTVTTEKTAH,DLEIELLKRQQKHKKQPEPSPALVPSLTVTTEKTAH,DLEIELLKRQQKHKKQPEPSPALVPSLTVTTEKTAH,DLEIELLKRQQKHKKQPEPSPALVPSLTVTTEKTAH,DLEIELLKRQQKHKKQPEPSPALVPSLTVTTEKTAH,DLEIELLKRQQKHKKQPEPSPALVPSLTVTTEKTAH,DLEIELLKRQQKHKKQPEPSPALVPSLTVTTEKTAH,DLEIELLKRQQKHKKQPEPSPALVPSLTVTTEKTAH,DLEIELLKRQQKHKKQPEPSPALVPSLTVTTEKTAH,DLEIELLKRQQKHKKQPEPSPALVPSLTVTTEKTAH,DLEIELLKRQQKHKKQPEPSPALVPSLTVTTEKTAH,DLEIELLKRQQKHKKQPEPSPALVPSLTVTTEKTAH,DLEIELLKRQQKHKKQPEPSPALVPSLTVTTEKTAH,DLEIELLKRQQKHKKQPEPSPALVPSLTVTTEKTAH,DLEIELLKRQQKHKKQPEPSPALVPSLTVTTEKTAH,DLEIELLKRQQKHKKQPEPSPALVPSLTVTTEKTAH,DLEIELLKRQQKHKKQPEPSPALVPSLTVTTEKTAH,DLEIELLKRQQKHKKQPEPSPALVPSLTVTTEKTAH,DLEIELLKRQQKHKKQPEPSPALVPSLTVTTEKTAH,DLEIELLKRQQKHKKQPEPSPALVPSLTVTTEKTAH FAM107B:NM_001282695[1,5]-MLLT10:NM_001195626[8,22];FAM107B:NM_001282696[1,4]-MLLT10:NM_001195626[8,22];FAM107B:NM_001282697[1,3]-MLLT10:NM_001195626[8,22];FAM107B:NM_001282698[1,4]-MLLT10:NM_001195626[8,22];FAM107B:NM_001282699[1,3]-MLLT10:NM_001195626[8,22];FAM107B:NM_001282700[1,3]-MLLT10:NM_001195626[8,22];FAM107B:NM_001282701[1,3]-MLLT10:NM_001195626[8,22];FAM107B:NM_001282702[1,4]-MLLT10:NM_001195626[8,22];FAM107B:NM_001282703[1,3]-MLLT10:NM_001195626[8,22];FAM107B:NM_031453[1,4]-MLLT10:NM_001195626[8,22];FAM107B:NM_001282695[1,5]-MLLT10:NM_004641[9,24];FAM107B:NM_001282696[1,4]-MLLT10:NM_004641[9,24];FAM107B:NM_001282697[1,3]-MLLT10:NM_004641[9,24];FAM107B:NM_001282698[1,4]-MLLT10:NM_004641[9,24];FAM107B:NM_001282699[1,3]-MLLT10:NM_004641[9,24];FAM107B:NM_001282700[1,3]-MLLT10:NM_004641[9,24];FAM107B:NM_001282701[1,3]-MLLT10:NM_004641[9,24];FAM107B:NM_001282702[1,4]-MLLT10:NM_004641[9,24];FAM107B:NM_001282703[1,3]-MLLT10:NM_004641[9,24];FAM107B:NM_031453[1,4]-MLLT10:NM_004641[9,24] geneB_transcripts=NM_001195626,NM_004641 ,,,,,,,,,,,,,,,,,,, 1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1 SJBALL020704_D1 LDLRAD4 chr18 13438383 + coding BCR chr22 23595986 + coding > 0 2 33 70 0.000 0.000 0 63 0.121 0.000 33 34 TGACCGAGCACCCGCCTCCGGGCATCTTCAACTATGGCTCGTTCGGGACACCACCTGGATACGGCTGCGCTGCAGACCGGGCAGAGGAGCAGCGCCGGCACCAA CTX 0.00 LQ 2 Fusion 1,1,1,1 NM_181481,NM_181482,NM_181481,NM_181482 61,61,61,61 3,4,3,4 tuple,tuple,tuple,tuple 181,181,181,181 9,9,9,9 31,31,31,31 NM_004327,NM_004327,NM_021574,NM_021574 427,427,427,427 2,2,2,2 blat,blat,blat,blat 1280,1280,1280,1280 3816,3816,3684,3684 11,11,11,11 35,35,35,35 TEHPPPGIFNYGSFGTPPGYGCAADRAEEQRRHQ,TEHPPPGIFNYGSFGTPPGYGCAADRAEEQRRHQ,TEHPPPGIFNYGSFGTPPGYGCAADRAEEQRRHQ,TEHPPPGIFNYGSFGTPPGYGCAADRAEEQRRHQ LDLRAD4:NM_181481[1,3]-BCR:NM_004327[2,23];LDLRAD4:NM_181482[1,4]-BCR:NM_004327[2,23];LDLRAD4:NM_181481[1,3]-BCR:NM_021574[2,22];LDLRAD4:NM_181482[1,4]-BCR:NM_021574[2,22] geneB_transcripts=NM_004327,NM_021574 Y,Y,Y,Y 2,2,2,2 SJBALL020704_D1 TAF3 chr10 7940546 - intron BCL2L11 chr2 111881314 + coding > 0 1 36 125 0.000 0.000 1 31 0.000 0.000 36 32 GGCTGTCACACACCAAGAAAAGTAAGGAAGAAAGATCAAATGGCAAAGCAACCTTCTGATGTAAGTTCTGAGTGTGACCGAGAAGGTAGACAATTGCAGCCTGCGGAGAGGCCTCCCCAGCTCAGACCTGGGGCCCCTGCCTCCCTACAGACAGAGC CTX 0.00 LQ 2 upTSS 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2 NM_031923,NM_031923,NM_031923,NM_031923,NM_031923,NM_031923,NM_031923,NM_031923,NM_031923,NM_031923,NM_031923,NM_031923,NM_031923,NM_031923,NM_031923,NM_031923,NM_031923,NM_031923,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, NM_001204106,NM_001204107,NM_001204108,NM_001204109,NM_001204110,NM_001204111,NM_001204112,NM_001204113,NM_006538,NM_138621,NM_138622,NM_138623,NM_138624,NM_138625,NM_138626,NM_138627,NM_207002,NM_207003,NM_001204106,NM_001204107,NM_001204108,NM_001204109,NM_001204110,NM_001204111,NM_001204112,NM_001204113,NM_006538,NM_138621,NM_138622,NM_138623,NM_138624,NM_138625,NM_138626,NM_138627,NM_207002,NM_207003 -2,-2,-2,-2,-2,-2,-2,-2,-2,-2,-2,-2,-2,-2,-2,-2,-2,-2,-2,-2,-2,-2,-2,-2,-2,-2,-2,-2,-2,-2,-2,-2,-2,-2,-2,-2 2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,,,,,,,,,,,,,,,,,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 327,258,519,423,249,228,243,297,417,597,510,330,408,228,408,138,339,240,327,258,519,423,249,228,243,297,417,597,510,330,408,228,408,138,339,240 13,13,13,13,13,13,13,13,13,13,13,13,13,13,13,13,13,13,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, GCHTPRKVRKKDQMAKQPSDVSSECDREGRQLQPAERPPQLRPGAPASLQTE,GCHTPRKVRKKDQMAKQPSDVSSECDREGRQLQPAERPPQLRPGAPASLQTE,GCHTPRKVRKKDQMAKQPSDVSSECDREGRQLQPAERPPQLRPGAPASLQTE,GCHTPRKVRKKDQMAKQPSDVSSECDREGRQLQPAERPPQLRPGAPASLQTE,GCHTPRKVRKKDQMAKQPSDVSSECDREGRQLQPAERPPQLRPGAPASLQTE,GCHTPRKVRKKDQMAKQPSDVSSECDREGRQLQPAERPPQLRPGAPASLQTE,GCHTPRKVRKKDQMAKQPSDVSSECDREGRQLQPAERPPQLRPGAPASLQTE,GCHTPRKVRKKDQMAKQPSDVSSECDREGRQLQPAERPPQLRPGAPASLQTE,GCHTPRKVRKKDQMAKQPSDVSSECDREGRQLQPAERPPQLRPGAPASLQTE,GCHTPRKVRKKDQMAKQPSDVSSECDREGRQLQPAERPPQLRPGAPASLQTE,GCHTPRKVRKKDQMAKQPSDVSSECDREGRQLQPAERPPQLRPGAPASLQTE,GCHTPRKVRKKDQMAKQPSDVSSECDREGRQLQPAERPPQLRPGAPASLQTE,GCHTPRKVRKKDQMAKQPSDVSSECDREGRQLQPAERPPQLRPGAPASLQTE,GCHTPRKVRKKDQMAKQPSDVSSECDREGRQLQPAERPPQLRPGAPASLQTE,GCHTPRKVRKKDQMAKQPSDVSSECDREGRQLQPAERPPQLRPGAPASLQTE,GCHTPRKVRKKDQMAKQPSDVSSECDREGRQLQPAERPPQLRPGAPASLQTE,GCHTPRKVRKKDQMAKQPSDVSSECDREGRQLQPAERPPQLRPGAPASLQTE,GCHTPRKVRKKDQMAKQPSDVSSECDREGRQLQPAERPPQLRPGAPASLQTE,,,,,,,,,,,,,,,,,, TAF3:NM_031923[1,2]-BCL2L11:NM_001204106[2,4];TAF3:NM_031923[1,2]-BCL2L11:NM_001204107[2,6];TAF3:NM_031923[1,2]-BCL2L11:NM_001204108[2,5];TAF3:NM_031923[1,2]-BCL2L11:NM_001204109[2,4];TAF3:NM_031923[1,2]-BCL2L11:NM_001204110[2,5];TAF3:NM_031923[1,2]-BCL2L11:NM_001204111[2,4];TAF3:NM_031923[1,2]-BCL2L11:NM_001204112[2,5];TAF3:NM_031923[1,2]-BCL2L11:NM_001204113[2,6];TAF3:NM_031923[1,2]-BCL2L11:NM_006538[2,5];TAF3:NM_031923[1,2]-BCL2L11:NM_138621[2,4];TAF3:NM_031923[1,2]-BCL2L11:NM_138622[2,5];TAF3:NM_031923[1,2]-BCL2L11:NM_138623[2,6];TAF3:NM_031923[1,2]-BCL2L11:NM_138624[2,5];TAF3:NM_031923[1,2]-BCL2L11:NM_138625[2,5];TAF3:NM_031923[1,2]-BCL2L11:NM_138626[2,3];TAF3:NM_031923[1,2]-BCL2L11:NM_138627[2,3];TAF3:NM_031923[1,2]-BCL2L11:NM_207002[2,4];TAF3:NM_031923[1,2]-BCL2L11:NM_207003[2,5];;;;;;;;;;;;;;;;;; geneB_transcripts=NM_001204106,NM_001204107,NM_001204108,NM_001204109,NM_001204110,NM_001204111,NM_001204112,NM_001204113,NM_006538,NM_138621,NM_138622,NM_138623,NM_138624,NM_138625,NM_138626,NM_138627,NM_207002,NM_207003;geneb_utr_codons=3 ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,,,,,,,,,,,,,,,,,, SJBALL020704_D1 GPCPD1 chr20 5573769 - intron TFRC chr3 195803993 - 5utr > 0 1 46 157 0.000 0.000 1 43 0.000 0.000 46 44 TTCAGAGGCAGATGATGTCTGCCATGGAATTTTAAAAAGACATAGTTCTTCTGTGTGGCAGTTCAGAATGATGGATCAAGCTAGATCAGCATTCTCTAACTTGTTTGGTGGAGAACCATTGTCATATACCCGGTTCAGCCTGGCTCGGCAAGTAGATGGCGATAACAGTCATGTGGAGATGAAACTTGCTGTAGATGAAGA CTX 0.00 LQ 2 upTSS 0,0,2,2 NM_019593,NM_019593,, ,,, 4,4,, ,,, 231,231,, ,,, ,,, NM_001128148,NM_003234,NM_001128148,NM_003234 -7,-7,-7,-7 2,2,, tuple,tuple,tuple,tuple ,,, 2283,2283,2283,2283 17,17,, ,,, SEADDVCHGILKRHSSSVWQFRMMDQARSAFSNLFGGEPLSYTRFSLARQVDGDNSHVEMKLAVDE,SEADDVCHGILKRHSSSVWQFRMMDQARSAFSNLFGGEPLSYTRFSLARQVDGDNSHVEMKLAVDE,, GPCPD1:NM_019593[1,4]-TFRC:NM_001128148[2,19];GPCPD1:NM_019593[1,4]-TFRC:NM_003234[2,19];; geneB_transcripts=NM_001128148,NM_003234;geneb_utr_codons=8 ,,, 1,1,, SJBALL020704_D1 BIRC6 chr2 32582554 + coding TRAK1 chr3 42166911 + coding > 0 1 38 191 0.000 0.000 0 36 0.029 0.000 38 37 CACCTCGGGGGCCACACTGCAGGCCTCCGCGCTCAGTGATGTGTGCAACAGCACCGATCTTCCGGAAGTCGAGATCATTAGCCTGCTGGAGGAGCAGCTGCCCCATTATAAGTTAAGAGCCGACACCATCTACGGTTATGACCACGACGACTGGCTCCATACACCTCTCATTTCTCCAGATGCCAACATTGACCTCACAACCGAGCAAATTGAAGAGACGTTAAAATA CTX 0.00 LQ 3 Fusion 1,1 NM_016252,NM_016252 109,109 1,1 perfect,perfect , 11,11 36,36 NM_001042646,NM_001265608 31,31 2,2 tuple,tuple 92,92 2862,2235 12,12 37,37 TSGATLQASALSDVCNSTDLPEVEIISLLEEQLPHYKLRADTIYGYDHDDWLHTPLISPDANIDLTTEQIEETLK,TSGATLQASALSDVCNSTDLPEVEIISLLEEQLPHYKLRADTIYGYDHDDWLHTPLISPDANIDLTTEQIEETLK BIRC6:NM_016252[1,1]-TRAK1:NM_001042646[2,16];BIRC6:NM_016252[1,1]-TRAK1:NM_001265608[2,14] geneB_transcripts=NM_001042646,NM_001265608 , 1,1 SJBALL020704_D1 RBM14,RBM14-RBM4,RBM4 chr11 66384526 + coding BCOR chrX 39937223 - 5utr > 0 1 52 195 0.000 0.000 0 52 0.046 0.000 52 53 TGCGCAGCCTCTTCGAGCGCCGCGGACGCGTCATCGAGTGTGACGTGGTGAACGACTAGACGCTTGAAGCAAAGCTGCCATCCCAGAAGACGACATGCTCTCAGCAACCCCCCTGTATGGGAACGTTCACAGCTGGATGAACAGCGAGAGGGTCCGCATGTGTGGGGCGAGCGAAGACAGGAAAATCCTTGTAAATGATGGTGACGCTTCAAAAGCCAGACTGGAACTGAGGGAAGAGAATCCCTTGA CTX 0.00 LQ 2 upTSS 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,2,2,2 NM_001198836,NM_001198837,NM_001198845,NM_001198846,NM_006328,NM_001198836,NM_001198837,NM_001198845,NM_001198846,NM_006328,NM_001198836,NM_001198837,NM_001198845,NM_001198846,NM_006328,NM_001198836,NM_001198837,NM_001198845,NM_001198846,NM_006328,,,, ,,,,,,,,,,,,,,,,,,,,,,, 1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,,,, ,,,,,,,,,,,,,,,,,,,,,,, 335,335,335,335,335,335,335,335,335,335,335,335,335,335,335,335,335,335,335,335,,,, ,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,, NM_001123383,NM_001123383,NM_001123383,NM_001123383,NM_001123383,NM_001123384,NM_001123384,NM_001123384,NM_001123384,NM_001123384,NM_001123385,NM_001123385,NM_001123385,NM_001123385,NM_001123385,NM_017745,NM_017745,NM_017745,NM_017745,NM_017745,NM_001123383,NM_001123384,NM_001123385,NM_017745 -13,-13,-13,-13,-13,-13,-13,-13,-13,-13,-13,-13,-13,-13,-13,-13,-13,-13,-13,-13,-13,-13,-13,-13 2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,,,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple ,,,,,,,,,,,,,,,,,,,,,,, 5166,5166,5166,5166,5166,5112,5112,5112,5112,5112,5268,5268,5268,5268,5268,5166,5166,5166,5166,5166,5166,5112,5268,5166 20,20,20,20,20,20,20,20,20,20,20,20,20,20,20,20,20,20,20,20,,,, ,,,,,,,,,,,,,,,,,,,,,,, AQPLRAPRTRHRV*RGERLDA*SKAAIPEDDMLSATPLYGNVHSWMNSERVRMCGASEDRKILVNDGDASKARLELREENPL,AQPLRAPRTRHRV*RGERLDA*SKAAIPEDDMLSATPLYGNVHSWMNSERVRMCGASEDRKILVNDGDASKARLELREENPL,AQPLRAPRTRHRV*RGERLDA*SKAAIPEDDMLSATPLYGNVHSWMNSERVRMCGASEDRKILVNDGDASKARLELREENPL,AQPLRAPRTRHRV*RGERLDA*SKAAIPEDDMLSATPLYGNVHSWMNSERVRMCGASEDRKILVNDGDASKARLELREENPL,AQPLRAPRTRHRV*RGERLDA*SKAAIPEDDMLSATPLYGNVHSWMNSERVRMCGASEDRKILVNDGDASKARLELREENPL,AQPLRAPRTRHRV*RGERLDA*SKAAIPEDDMLSATPLYGNVHSWMNSERVRMCGASEDRKILVNDGDASKARLELREENPL,AQPLRAPRTRHRV*RGERLDA*SKAAIPEDDMLSATPLYGNVHSWMNSERVRMCGASEDRKILVNDGDASKARLELREENPL,AQPLRAPRTRHRV*RGERLDA*SKAAIPEDDMLSATPLYGNVHSWMNSERVRMCGASEDRKILVNDGDASKARLELREENPL,AQPLRAPRTRHRV*RGERLDA*SKAAIPEDDMLSATPLYGNVHSWMNSERVRMCGASEDRKILVNDGDASKARLELREENPL,AQPLRAPRTRHRV*RGERLDA*SKAAIPEDDMLSATPLYGNVHSWMNSERVRMCGASEDRKILVNDGDASKARLELREENPL,AQPLRAPRTRHRV*RGERLDA*SKAAIPEDDMLSATPLYGNVHSWMNSERVRMCGASEDRKILVNDGDASKARLELREENPL,AQPLRAPRTRHRV*RGERLDA*SKAAIPEDDMLSATPLYGNVHSWMNSERVRMCGASEDRKILVNDGDASKARLELREENPL,AQPLRAPRTRHRV*RGERLDA*SKAAIPEDDMLSATPLYGNVHSWMNSERVRMCGASEDRKILVNDGDASKARLELREENPL,AQPLRAPRTRHRV*RGERLDA*SKAAIPEDDMLSATPLYGNVHSWMNSERVRMCGASEDRKILVNDGDASKARLELREENPL,AQPLRAPRTRHRV*RGERLDA*SKAAIPEDDMLSATPLYGNVHSWMNSERVRMCGASEDRKILVNDGDASKARLELREENPL,AQPLRAPRTRHRV*RGERLDA*SKAAIPEDDMLSATPLYGNVHSWMNSERVRMCGASEDRKILVNDGDASKARLELREENPL,AQPLRAPRTRHRV*RGERLDA*SKAAIPEDDMLSATPLYGNVHSWMNSERVRMCGASEDRKILVNDGDASKARLELREENPL,AQPLRAPRTRHRV*RGERLDA*SKAAIPEDDMLSATPLYGNVHSWMNSERVRMCGASEDRKILVNDGDASKARLELREENPL,AQPLRAPRTRHRV*RGERLDA*SKAAIPEDDMLSATPLYGNVHSWMNSERVRMCGASEDRKILVNDGDASKARLELREENPL,AQPLRAPRTRHRV*RGERLDA*SKAAIPEDDMLSATPLYGNVHSWMNSERVRMCGASEDRKILVNDGDASKARLELREENPL,,,, RBM14:NM_001198836[1,1]-BCOR:NM_001123383[2,15];RBM14:NM_001198837[1,1]-BCOR:NM_001123383[2,15];RBM14-RBM4:NM_001198845[1,1]-BCOR:NM_001123383[2,15];RBM14-RBM4:NM_001198846[1,1]-BCOR:NM_001123383[2,15];RBM14:NM_006328[1,1]-BCOR:NM_001123383[2,15];RBM14:NM_001198836[1,1]-BCOR:NM_001123384[2,14];RBM14:NM_001198837[1,1]-BCOR:NM_001123384[2,14];RBM14-RBM4:NM_001198845[1,1]-BCOR:NM_001123384[2,14];RBM14-RBM4:NM_001198846[1,1]-BCOR:NM_001123384[2,14];RBM14:NM_006328[1,1]-BCOR:NM_001123384[2,14];RBM14:NM_001198836[1,1]-BCOR:NM_001123385[2,15];RBM14:NM_001198837[1,1]-BCOR:NM_001123385[2,15];RBM14-RBM4:NM_001198845[1,1]-BCOR:NM_001123385[2,15];RBM14-RBM4:NM_001198846[1,1]-BCOR:NM_001123385[2,15];RBM14:NM_006328[1,1]-BCOR:NM_001123385[2,15];RBM14:NM_001198836[1,1]-BCOR:NM_017745[2,15];RBM14:NM_001198837[1,1]-BCOR:NM_017745[2,15];RBM14-RBM4:NM_001198845[1,1]-BCOR:NM_017745[2,15];RBM14-RBM4:NM_001198846[1,1]-BCOR:NM_017745[2,15];RBM14:NM_006328[1,1]-BCOR:NM_017745[2,15];;;; geneB_transcripts=NM_001123383,NM_001123384,NM_001123385,NM_017745;geneb_utr_codons=13 ,,,,,,,,,,,,,,,,,,,,,,, 1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,,,, SJBALL020704_D1 SNX8 chr7 2296509 - coding FTSJ2 chr7 2279312 - coding > 0 12 86 296 0.000 0.000 0 535 0.036 0.142 86 86 AGACGCAGCTCATCCACGTCTACCTGCCCCTCACCTCCCACATCCTCCGCGCCTTCGTCAACTCTCAGATCCAAGGGCACAAGGAGCGTCAAGGGTTCCACACTGTTGGGAGTCGCTGCAAGAATCGGACAGGCGCTGAGCACCTGTGGCTGACCCGACATCTCAGGGACCCATTTGTGAAGGCTGCGAAGGTGGAGAGTTACCGGTGTCGAAGCGCCTTCAAGCTCCTGGAGGTGAACGAGAGGCACCAGATTCTGCGGCCCGGCCTTCGGGTGTTAGACTGTGGGGCAGCTCCTGGGGCCTGGAGTCAGGTGGCGGTGCAGAAGGTCAACGCCGCAGGCACAGATCCCAGCTCTCCTGTTGGCTTCGTGCTTGGGGTAG read_through 107.00 RT 0 Fusion 1 NM_013321 429 10 perfect 1284 27 85 NM_013393 13 2 blat 39 741 28 86 TQLIHVYLPLTSHILRAFVNSQIQGHKERQGFHTVGSRCKNRTGAEHLWLTRHLRDPFVKAAKVESYRCRSAFKLLEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGV SNX8:NM_013321[1,10]-FTSJ2:NM_013393[2,3] geneB_transcripts=NM_013393;reannotated geneA from SNX8,MIR6836 to SNX8 2 SJBALL020704_D1 GMFG chr19 39819640 - coding LRFN1 chr19 39808999 - intergenic > 7 8 72 96 0.000 0.000 289 416 0.000 0.375 72 72 TGCAAGCCGGAACAACAGATGATGTATGCAGGGAGTAAAAACAGGCTGGTGCAGACAGCAGAGCTCACAAAGGTGCTGGCCCAGGCCCTGACTCCCTGAAGAGAGGTGAGTAGAGCCGTAAGGCTTCAGAGAGAGAGAGACATGGGGGGTGATGGGGCTTGCTGTCA read_through 41.60 RT 0 CLoss 0,0 NM_001301008,NM_004877 , , , 234,357 , , NM_020862,NM_020862 , , , , , , , , ; geneB_no_transcripts , , SJBALL020704_D1 SNX8,MIR6836 chr7 2314747 - coding FTSJ2 chr7 2279343 - coding > 18 9 85 74 0.000 0.000 548 373 0.019 0.133 85 85 GACTTCGTGGTCTTCCAGGAGATGCTCCTGCACAAGTTCCCCTACCGTATGGTGCCTGCCCTGCCACCCAAGAGAATGCTGGGAGGTACTTGAAGCTGGTGTGTGTTTCCTTTCAGCGTCAAGGGTTCCACACTGTTGGGAGTCGCTGCAAGAATCGG read_through 41.51 RT 0 Fusion 0,0 NM_013321, , 3, , 418, , , NM_013393,NM_013393 3,3 2, blat,blat 9,9 741,741 28, , LRGLPGDAPAQVPLPYGACPATQENAGRYLKLVCVSFQRQGFHTVGSRCKNR, SNX8:NM_013321[1,3]-FTSJ2:NM_013393[2,3]; geneB_transcripts=NM_013393 , 2, SJBALL020704_D1 SNX8 chr7 2302865 - coding FTSJ2 chr7 2279312 - coding > 16 11 180 86 0.000 0.000 622 48 0.027 0.142 180 180 GCCATCGACAATGCGGCAGATCTTCTCATATTCGGGAAGGAGCTAAGTGCAATAGGGTCTGACACGACCCCGCTGCCCTCCTGGGCCGCTCTGAATAGCAGCACGTGGGGGTCCCTGAAGCAGGCTCTGAAAGGCCTGTCTGTGGAATTCGCGCTGCTCGCCGACAAGGCTGCACAACAGCGTCAAGGGTTCCACACTGTTGGGAGTCGCTGCAAGAATCGGACAGGCGCTGAGCACCTGTGGCTGACCCGACATCTCAGGGACC read_through 28.52 RT 0 Fusion 1 NM_013321 305 7 perfect 915 58 176 NM_013393 13 2 tuple 39 741 59 177 AIDNAADLLIFGKELSAIGSDTTPLPSWAALNSSTWGSLKQALKGLSVEFALLADKAAQQRQGFHTVGSRCKNRTGAEHLWLTRHLRD SNX8:NM_013321[1,7]-FTSJ2:NM_013393[2,3] geneB_transcripts=NM_013393;reannotated geneA from SNX8,MIR6836 to SNX8 0 SJBALL020704_D1 SNX8 chr7 2317735 - coding FTSJ2 chr7 2279312 - coding > 6 6 185 65 0.000 0.000 229 16 0.056 0.142 185 185 TCGAGCCCCAGGCCATCGTGCAGCAGGTCCCAGCCCCCAGTCGAATGCAGATGCCGCAGGGGAACCCGCTGCTGCTGTCCCACACCCTGCAGGAGCTGCTGGCCAGGGACACCGTGCAGGTGGAGCTCATTCCGGAGAAGAAGGGCCTCTTCCTGAAGCATGTGGAGTATGAGGTTTCCAGCCAGCGTCAAGGGTTCCACACTGTTGGGAGTCGCTGCAAGAATCGGACAGGCGCTGAGCACCTGTGGC read_through 21.82 RT 0 Fusion 1 NM_013321 100 2 perfect 300 59 181 NM_013393 13 2 tuple 39 741 60 182 EPQAIVQQVPAPSRMQMPQGNPLLLSHTLQELLARDTVQVELIPEKKGLFLKHVEYEVSSQRQGFHTVGSRCKNRTGAEHLW SNX8:NM_013321[1,2]-FTSJ2:NM_013393[2,3] geneB_transcripts=NM_013393;reannotated geneA from SNX8,MIR6836 to SNX8 2 SJBALL020704_D1 WDR86 chr7 151092862 - coding NUB1 chr7 151066582 - intron > 4 4 74 158 0.000 0.000 194 210 0.143 0.000 74 74 GTGCCTGGGACATCCTGAGTGGGGAGCAGCTGCGGGTGTTCCGGGAGCACCGGGGCTCCGTCATCTGTCTGGAGGCAAGGATGCAATCCCCAACTTTAATAATGACCTCATGAAGAAACAATTTTGTTTTTAAAATGACTTCCAGAAATACACTATGGTGTTAAAGAAAGAGAGAGAGGGGACCGTTTGCCACCACAGCAGGAAACAAAACTAAGGAGACTGCAGCATGTGG read_through 19.40 RT 0 CLoss ,,,,,,, NM_001284260,NM_001284260,NM_001284261,NM_001284261,NM_001284262,NM_001284262,NM_198285,NM_198285 ,,,,,,, ,,,,,,, ,,,,,,, 726,726,342,342,342,342,726,726 ,,,,,,, ,,,,,,, NM_001243351,NM_016118,NM_001243351,NM_016118,NM_001243351,NM_016118,NM_001243351,NM_016118 ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, ;;;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001243351,NM_016118;geneB_transcript_strand_disagree=NM_001243351;geneB_transcript_strand_disagree=NM_016118 ,,,,,,, ,,,,,,, SJBALL020704_D1 SNX8,MIR6836 chr7 2314747 - coding FTSJ2 chr7 2279312 - coding > 18 2 199 87 0.000 0.000 914 65 0.019 0.142 199 199 AGGGACACCGTGCAGGTGGAGCTCATTCCGGAGAAGAAGGGCCTCTTCCTGAAGCATGTGGAGTATGAGGTTTCCAGCCAGCGCTTCAAGTCCTCGGTATACAGACGGTACAATGACTTCGTGGTCTTCCAGGAGATGCTCCTGCACAAGTTCCCCTACCGTATGGTGCCTGCCCTGCCACCCAAGAGAATGCTGGGAGCGTCAAGGGTTCCACACTGTTGGGAGTCGCTGCAAGAATCGGACAGGCGCTGAGCACCTGTGGCTGACCCGACATCTCAGGGACCC read_through 13.52 RT 0 Fusion 0,3 NM_013321, , 3, , 418, , , NM_013393,NM_013393 13,13 2, blat,blat 39,39 741,741 66, , GTPCRWSSFRRRRASS*SMWSMRFPASASSPRYTDGTMTSWSSRRCSCTSSPTVWCLPCHPRECWERQGFHTVGSRCKNRTGAEHLWLTRHLRD, SNX8:NM_013321[1,3]-FTSJ2:NM_013393[2,3]; geneB_transcripts=NM_013393 , 1, SJBALL021856_D1 ETV6 chr12 12006496 + coding JAK2 chr9 5078304 + coding > 24 8 228 186 0.000 0.000 1638 239 0.258 0.170 229 226 TAAGGCCAATTGACAGCAACACATTTGAAATGAATGGCAAAGCTCTCCTGCTGCTGACCAAAGAGGACTTTCGCTATCGATCTCCTCATTCAGGTGATGTGCTCTATGAACTCCTTCAGCATATTCTGAAGCAGAGGAAACCTCGGATTCTTTTTTCACCATTCTTCCACCCTGGAAACTCTATACACACACAGCCGGAGGTCATACTGCATCAGAACCATGAAGAAGGAAGAAAACACCCTTATTCATGGGAATGTATGTGCCAAAAATATTCTGCTTATCAGAGAAGAAGACAGGAAGACAGGAAATCCTCCTTTCATCAAACTTAGTGATCCTGGCATTAGTATTACAGTTTTGCCAAAGGACATTCTTCAGGAGAGAATACCATGGGTACCACCTGAATGCATTGAAA CTX 1877.00 HQ 4 Fusion 0,3 NM_001987, , 4, , 463, , , NM_004972,NM_004972 665,665 16, tuple,tuple 1993,1993 3399,3399 76, , *GQLTATHLK*MAKLSCC*PKRTFAIDLLIQVMCSMNSFSIF*SRGNLGFFFHHSSTLETLYTHSRRSYCIRTMKKEENTLIHGNVCAKNILLIREEDRKTGNPPFIKLSDPGISITVLPKDILQERIPWVPPECIE, ETV6:NM_001987[1,4]-JAK2:NM_004972[16,25]; geneB_transcripts=NM_004972 , 0, SJBALL021856_D1 ETV6 chr12 12006495 + coding JAK2 chr9 5080226 + coding > 6 3 83 171 0.000 0.000 235 94 0.258 0.074 84 81 CCTCCTGCTGCTGACCAAAGAGGACTTTCGCTATCGATCTCCTCATTCAGCCGGAGGTCATACTGCATCAGAACCATGAAGAAGTTCTTCAGGAGAGAATACCATGGGTACCACCTGAATGCATTGAAAATCCTAAAAATTTAAATTTGGCAACAGACAAATGGAGTTTTGGTACCACTTTGTGGGAAATCTGCAGTGGAGGAGATAAACCTCTAAGTGCTCTGGATTCTCAAAGAAAGCTACAATTTTATG CTX 565.24 HQ 4 Fusion 1 NM_001987 155 4 tuple 463 26 82 NM_004972 711 17 blat 2132 3399 28 86 SCC*PKRTFAIDLLIQPEVILHQNHEEVLQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDSQRKLQFY ETV6:NM_001987[1,4]-JAK2:NM_004972[17,25] geneB_transcripts=NM_004972 V 2 SJBALL021856_D1 ETV6 chr12 12009458 + intron EML4 chr2 42524472 - intron ? 6 13 93 176 0.000 0.000 156 664 0.062 0.182 93 98 GTCTGAGAGCATGTCCGGGCGCATGTGCTCCAGTGAACAGGTGCACACAACAAGGAGAGAAGTGTAGGTCTTTATCCGGTGGTATCCAGGGAGGCGGTCAGTGTTGGAGATTCGTGAACAATTTAAAAGTCACTGTTTTAATAGACTATGCTGTTCCTGGCATTTCTGATACTAAGTAAATGTGCCCAGGAAAGAAAAATAAGAAAAAAAGAAAAGAGAAATAAATGGGAAAAGTAGTTGATAATATATTGTTGTTGTAACTTTATTTTTTAAG CTX 367.05 HQ 3 other unhandled orientation ? SJBALL021856_D1 JAK2 chr9 5077979 - intron EML4 chr2 42523551 + intron ? 10 6 202 142 0.000 0.000 346 204 0.310 0.167 203 215 CATGTATTGAGAAAAAGGAAATTTATGACTCCTATGCTTCCTGTTTTACATTTTAAATAACACAATAATCTATGCTTGTGATGAAATGAATAAATTAAAACTACCAATGCCATTTCACATGAGTTCTAAGGCTGACATGGTTTGTGTTTCTGGATGGGAGCTGACATTAAGAAATACTACTTCAGTTCTGCAGCAGGACATAGTGAAATTTCAGGGCAACATGTCCTTTCTCTTGTTCATTCACCTCCCCTAAACACACTGGAACAACACCTTACTTCTCTCTCTCTCTCTCTCTCTCTCTGGAGTCCTTGCATCAGACCATGAAAATCACCCTAAGTGATTTATGAATAAGGGAAT CTX 275.00 HQ 3 other unhandled orientation ? SJBALL021856_D1 HLA-D chr6 32493797 - 5utr NA chr8 84990245 + intergenic > 1 17 207 123 0.596 0.959 11 619 0.000 0.538 228 230 TGAGAACGTGACAGAGAAGCAAGTGCTGGGTTGCTGGTTTGCTGGAGTTGATATTTGCAGTCAATGGAGTATCCAGGGAGGAAACTGGATTGGACCATTTGAAGAGCAAGTAGAAGTGAGGACGAAGTTAAGATTGACTGTTTTGAGTAGAGAGCTTCAGGGAAGGACTGTGCTCTGGGTTCAGGGAGCCAGCTGATTCTAAAGGAAAAGGCTAAAGAAGCTGAAGAGCCAGCTTTCCCAGCACCATTTATTAAATAGGGAATCCTTTCCCCATTTCTGTTTTTTGTCAGATTTATCAAACATCAGATGGTTGTAGATGTGTGGTATTATTTCTGAGGGCTCTGTTCTGTTCC CTX 249.77 HQ 0 other NM_002125 101 geneB_no_transcripts SJBALL021856_D1 JAK2 chr9 5077977 + intron ETV6 chr12 12022358 + coding > 2 2 92 57 0.000 0.000 39 59 0.077 0.146 93 94 TTGGGCCATTGTACATTATGGTCCATGAGAAAGCGGTGTTGACAGAGAAGAATACCAGGGGGACTGCCAGTCATCAGACCCCTCAGGGTGCAAATAACTGTGTCCAGAGGACCCCCAGGCCATCCGTGGATAATGTGCACCATAACCCTC CTX 79.36 HQ 4 NLoss 0,3 NM_004972, , 15, , 1993, , , NM_001987,NM_001987 155,155 5, blat,blat 464,464 1359,1359 31, , GPLYIMVHEKAVLTEKNTRGTASHQTPQGANNCVQRTPRPSVDNVHHNP, JAK2:NM_004972[1,15]-ETV6:NM_001987[5,8]; geneB_transcripts=NM_001987 , 2, SJBALL021856_D1 CXCR4 chr2 136875608 - coding SDF4 chr1 1154302 - coding > 0 2 100 50 0.000 0.000 0 121 0.003 0.041 109 102 TCTTCCAGATGCGGCAGCAGGTAGCAAAGTGACGCCGAGGGCCTGAGTGCTCCAGTAGCCACCGCATCTGGAGAACCAGCGGTTACCATGGAGGGGATCAGTGAAGTCCTGGAGAACCTGAAGGACCGCTGGTACCAGGCGGACAGCCCCCC CTX 35.54 LQ 3 Fusion 0,0,3,3 NM_003467,NM_003467,, ,,, 1,1,, ,,, 15,15,, ,,, ,,, NM_016176,NM_016547,NM_016176,NM_016547 195,195,195,195 5,5,, tuple,tuple,tuple,tuple 583,583,583,583 1089,1047,1089,1047 34,34,, ,,, SSRCGSR*QSDAEGLSAPVATASGEPAVTMEGISEVLENLKDRWYQADSP,SSRCGSR*QSDAEGLSAPVATASGEPAVTMEGISEVLENLKDRWYQADSP,, CXCR4:NM_003467[1,1]-SDF4:NM_016176[5,7];CXCR4:NM_003467[1,1]-SDF4:NM_016547[5,7];; geneB_transcripts=NM_016176,NM_016547 ,,, 0,0,, SJBALL021856_D1 CCDC94 chr19 4254486 + coding FOXO1 chr13 41134999 - coding > 2 0 92 50 0.000 0.000 57 0 0.030 0.000 93 91 CGCGGAATTTCCAGGCTGAGAAGCTCCTGGAGGAGGAGGAGAAGAGGGTGCAGAAGGAGCGGGAGGACGAGGAGCTGAACAACCCCATGAAGAATTCAATTCGTCATAATCTGTCCCTACACAGCAAGTTCATTCGTGTG CTX 21.89 LQ 2 Fusion 1 NM_018074 136 4 perfect 405 29 91 NM_002015 211 2 tuple 631 1968 30 92 RNFQAEKLLEEEEKRVQKEREDEELNNPMKNSIRHNLSLHSKFIRV CCDC94:NM_018074[1,4]-FOXO1:NM_002015[2,3] geneB_transcripts=NM_002015 2 SJBALL021856_D1 AKAP8 chr19 15490524 - coding BRD4 chr19 15383945 - 5utr > 2 2 48 118 0.000 0.000 134 68 0.000 0.037 48 48 CGGGGCTGCTGGTGGGCCGCGTCGAAGACATGGACCAGGGCTACGGAGAGTGCCTGGTGAAGAATGTGATGGGATCACTAGCATGTCTGCGGAGAGCGGCCCTGGGACGAGATTGAGAAATCTGCCAGTAATGGGGGATGGACTAGAAACTTCCCAAATGTCTAC DEL 12.97 LQ 2 upTSS 0,0,2,2 NM_005858,NM_005858,, ,,, 1,1,, ,,, 19,19,, ,,, ,,, NM_014299,NM_058243,NM_014299,NM_058243 -11,-11,-11,-11 2,2,, tuple,tuple,tuple,tuple ,,, 2169,4089,2169,4089 18,18,, ,,, GAAGGPRRRHGPGLRRVPGEECDGITSMSAESGPGTRLRNLPVMGDGLETSQMS,GAAGGPRRRHGPGLRRVPGEECDGITSMSAESGPGTRLRNLPVMGDGLETSQMS,, AKAP8:NM_005858[1,1]-BRD4:NM_014299[2,12];AKAP8:NM_005858[1,1]-BRD4:NM_058243[2,20];; geneB_transcripts=NM_014299,NM_058243;geneb_utr_codons=12 ,,, 1,1,, SJBALL021856_D1 CBFA2T3 chr16 89007427 - 5utr DAZAP1 chr19 1417499 + coding > 0 2 55 41 0.000 0.000 0 105 0.039 0.019 56 55 CGAGTCGCGAGAGTGCGCCGTCCGCCGCCCGCCGGATCCCCCGGACCCCCCGACCGAAGCTCTTCGTGGGCGGTCTTGACTGGAGCACGACCCAAGAGACTCTGCG CTX 7.80 LQ 3 NLoss 0,0,0,0,0,0,0,0 NM_001290330,NM_005187,NM_175931,NM_001290330,NM_005187,NM_175931,, ,,,,,,, 1,1,1,1,1,1,, ,,,,,,, ,151,,,151,,, ,,,,,,, ,,,,,,, NM_018959,NM_018959,NM_018959,NM_170711,NM_170711,NM_170711,NM_018959,NM_170711 10,10,10,10,10,10,10,10 2,2,2,2,2,2,, blat,blat,blat,blat,blat,blat,blat,blat 30,30,30,30,30,30,30,30 1224,1224,1224,1137,1137,1137,1224,1137 18,18,18,18,18,18,, ,,,,,,, SRESAPSAARRIPRTPRPKLFVGGLDWSTTQETL,SRESAPSAARRIPRTPRPKLFVGGLDWSTTQETL,SRESAPSAARRIPRTPRPKLFVGGLDWSTTQETL,SRESAPSAARRIPRTPRPKLFVGGLDWSTTQETL,SRESAPSAARRIPRTPRPKLFVGGLDWSTTQETL,SRESAPSAARRIPRTPRPKLFVGGLDWSTTQETL,, LOC100129697:NM_001290330[1,1]-DAZAP1:NM_018959[2,12];CBFA2T3:NM_005187[1,1]-DAZAP1:NM_018959[2,12];CBFA2T3:NM_175931[1,1]-DAZAP1:NM_018959[2,12];LOC100129697:NM_001290330[1,1]-DAZAP1:NM_170711[2,13];CBFA2T3:NM_005187[1,1]-DAZAP1:NM_170711[2,13];CBFA2T3:NM_175931[1,1]-DAZAP1:NM_170711[2,13];; geneB_transcripts=NM_018959,NM_170711 ,,,,,,, 2,2,2,2,2,2,, SJBALL021856_D1 MEX3C chr18 48722937 - coding FUS chr16 31200443 + coding > 2 0 165 48 0.000 0.597 53 0 0.036 0.000 166 165 TGGCGGCGATGCTGTCCCACGCCTACGGCCCCGGCGGTTGTGGGGCGGCGGCGGCCGCCCTGAACGGGGAGCAGGCGGCCCTGCTCCGGAGAAAGAGCGTCAACACCACCGAGTGCGTCCCGGTGCCCAGCTCCGAGCACGTCGCCGAGATCGTCGGCCGCCAGGAACAGGATAATTCAGACAACAACACCATCTTTGTGCAAGGCCTGGGT CTX 3.88 LQ 2 Fusion 1,1,1 NM_016626,NM_016626,NM_016626 252,252,252 1,1,1 perfect,perfect,perfect 754,754,754 53,53,53 163,163,163 NM_001170634,NM_001170937,NM_004960 277,274,278 9,9,9 tuple,tuple,tuple 830,821,833 1578,1569,1581 54,54,54 164,164,164 AAMLSHAYGPGGCGAAAAALNGEQAALLRRKSVNTTECVPVPSSEHVAEIVGRQEQDNSDNNTIFVQGLG,AAMLSHAYGPGGCGAAAAALNGEQAALLRRKSVNTTECVPVPSSEHVAEIVGRQEQDNSDNNTIFVQGLG,AAMLSHAYGPGGCGAAAAALNGEQAALLRRKSVNTTECVPVPSSEHVAEIVGRQEQDNSDNNTIFVQGLG MEX3C:NM_016626[1,1]-FUS:NM_001170634[9,15];MEX3C:NM_016626[1,1]-FUS:NM_001170937[9,15];MEX3C:NM_016626[1,1]-FUS:NM_004960[9,15] geneB_transcripts=NM_001170634,NM_001170937,NM_004960 ,, 2,2,2 SJBALL021856_D1 DYRK1A chr21 38868560 + coding IKZF1 chr7 50435703 + coding > 0 2 51 97 0.000 0.000 0 58 0.000 0.014 51 50 AAGTTGCCAGATGGCACTTGGAACTTAAAGAAGACCAAAGATGGAAAACGGTTACATATGGGGCTGATGACTTTAGGGATTTCCATGCAATAATTCCCAAATCTTTCTCTCGTAAGTATATGCCTTGCTTCTGGAAAACAAAAGCAT CTX 1.75 LQ 3 Fusion 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 NM_001396,NM_101395,NM_130436,NM_130438,NM_001396,NM_101395,NM_130436,NM_130438,NM_001396,NM_101395,NM_130436,NM_130438,,, ,,,,,,,,,,,,,, 8,10,8,8,8,10,8,8,8,10,8,8,,, ,,,,,,,,,,,,,, 1239,1239,1212,1239,1239,1239,1212,1239,1239,1239,1212,1239,,, ,,,,,,,,,,,,,, ,,,,,,,,,,,,,, NM_001291845,NM_001291845,NM_001291845,NM_001291845,NM_001291846,NM_001291846,NM_001291846,NM_001291846,NM_001291847,NM_001291847,NM_001291847,NM_001291847,NM_001291845,NM_001291846,NM_001291847 54,54,54,54,54,54,54,54,54,54,54,54,54,54,54 4,4,4,4,4,4,4,4,4,4,4,4,,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 161,161,161,161,161,161,161,161,161,161,161,161,161,161,161 525,525,525,525,234,234,234,234,234,234,234,234,525,234,234 16,16,16,16,16,16,16,16,16,16,16,16,,, ,,,,,,,,,,,,,, VARWHLELKEDQRWKTVTYGADDFRDFHAIIPKSFSRKYMPCFWKTKA,VARWHLELKEDQRWKTVTYGADDFRDFHAIIPKSFSRKYMPCFWKTKA,VARWHLELKEDQRWKTVTYGADDFRDFHAIIPKSFSRKYMPCFWKTKA,VARWHLELKEDQRWKTVTYGADDFRDFHAIIPKSFSRKYMPCFWKTKA,VARWHLELKEDQRWKTVTYGADDFRDFHAIIPKSFSRKYMPCFWKTKA,VARWHLELKEDQRWKTVTYGADDFRDFHAIIPKSFSRKYMPCFWKTKA,VARWHLELKEDQRWKTVTYGADDFRDFHAIIPKSFSRKYMPCFWKTKA,VARWHLELKEDQRWKTVTYGADDFRDFHAIIPKSFSRKYMPCFWKTKA,VARWHLELKEDQRWKTVTYGADDFRDFHAIIPKSFSRKYMPCFWKTKA,VARWHLELKEDQRWKTVTYGADDFRDFHAIIPKSFSRKYMPCFWKTKA,VARWHLELKEDQRWKTVTYGADDFRDFHAIIPKSFSRKYMPCFWKTKA,VARWHLELKEDQRWKTVTYGADDFRDFHAIIPKSFSRKYMPCFWKTKA,,, DYRK1A:NM_001396[1,8]-IKZF1:NM_001291845[4,4];DYRK1A:NM_101395[1,10]-IKZF1:NM_001291845[4,4];DYRK1A:NM_130436[1,8]-IKZF1:NM_001291845[4,4];DYRK1A:NM_130438[1,8]-IKZF1:NM_001291845[4,4];DYRK1A:NM_001396[1,8]-IKZF1:NM_001291846[4,5];DYRK1A:NM_101395[1,10]-IKZF1:NM_001291846[4,5];DYRK1A:NM_130436[1,8]-IKZF1:NM_001291846[4,5];DYRK1A:NM_130438[1,8]-IKZF1:NM_001291846[4,5];DYRK1A:NM_001396[1,8]-IKZF1:NM_001291847[4,5];DYRK1A:NM_101395[1,10]-IKZF1:NM_001291847[4,5];DYRK1A:NM_130436[1,8]-IKZF1:NM_001291847[4,5];DYRK1A:NM_130438[1,8]-IKZF1:NM_001291847[4,5];;; geneB_breakpoint_not_mapped_to_CDS=NM_001220765;geneB_breakpoint_not_mapped_to_CDS=NM_001220767;geneB_breakpoint_not_mapped_to_CDS=NM_001220768;geneB_breakpoint_not_mapped_to_CDS=NM_001220770;geneB_breakpoint_not_mapped_to_CDS=NM_001220771;geneB_breakpoint_not_mapped_to_CDS=NM_001291837;geneB_breakpoint_not_mapped_to_CDS=NM_001291838;geneB_breakpoint_not_mapped_to_CDS=NM_001291839;geneB_breakpoint_not_mapped_to_CDS=NM_001291840;geneB_breakpoint_not_mapped_to_CDS=NM_001291841;geneB_breakpoint_not_mapped_to_CDS=NM_001291842;geneB_breakpoint_not_mapped_to_CDS=NM_001291843;geneB_breakpoint_not_mapped_to_CDS=NM_001291844;geneB_breakpoint_not_mapped_to_CDS=NM_006060 geneB_transcripts=NM_001220765,NM_001220767,NM_001220768,NM_001220770,NM_001220771,NM_001291837,NM_001291838,NM_001291839,NM_001291840,NM_001291841,NM_001291842,NM_001291843,NM_001291844,NM_001291845,NM_001291846,NM_001291847,NM_006060;geneB_intronic=NM_001220765;geneB_intronic=NM_001220767;geneB_intronic=NM_001220768;geneB_intronic=NM_001220770;geneB_intronic=NM_001220771;geneB_intronic=NM_001291837;geneB_intronic=NM_001291838;geneB_intronic=NM_001291839;geneB_intronic=NM_001291840;geneB_intronic=NM_001291841;geneB_intronic=NM_001291842;geneB_intronic=NM_001291843;geneB_intronic=NM_001291844;geneB_intronic=NM_006060 ,,,,,,,,,,,,,, 2,2,2,2,2,2,2,2,2,2,2,2,,, SJBALL021856_D1 PTCH1 chr9 98269778 + intron CBFA2T3 chr16 88958895 - coding > 1 0 97 41 0.000 0.000 39 1 0.067 0.000 98 96 GTCTGGGTGCTCGCCTTCCCTGGATTCCACACATTTCAGCGAGCCTCGTAAACACAATGAACCCGGCAGCTCCGCAGACTCGCACCGCGAATTTAAGTGATGAACGGCAGCAGCCACTCACCAACAGCCATCAATG CTX 0.20 LQ 3 NLoss 0,0,0,0,0,0,0,0,0,0,3,3 NM_000264,NM_001083602,NM_001083603,NM_001083604,NM_001083605,NM_000264,NM_001083602,NM_001083603,NM_001083604,NM_001083605,, ,,,,,,,,,,, 1,1,1,1,1,1,1,1,1,1,, ,,,,,,,,,,, ,,,,,,,,,,, ,,,,,,,,,,, ,,,,,,,,,,, NM_005187,NM_005187,NM_005187,NM_005187,NM_005187,NM_175931,NM_175931,NM_175931,NM_175931,NM_175931,NM_005187,NM_175931 127,127,127,127,127,41,41,41,41,41,127,41 4,4,4,4,4,3,3,3,3,3,, blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat 380,380,380,380,380,122,122,122,122,122,380,122 1962,1962,1962,1962,1962,1704,1704,1704,1704,1704,1962,1704 32,32,32,32,32,32,32,32,32,32,, ,,,,,,,,,,, VWVLAFPGFHTFQRAS*TQ*TRQLRRLAPRI*VMNGSSHSPTAIN,VWVLAFPGFHTFQRAS*TQ*TRQLRRLAPRI*VMNGSSHSPTAIN,VWVLAFPGFHTFQRAS*TQ*TRQLRRLAPRI*VMNGSSHSPTAIN,VWVLAFPGFHTFQRAS*TQ*TRQLRRLAPRI*VMNGSSHSPTAIN,VWVLAFPGFHTFQRAS*TQ*TRQLRRLAPRI*VMNGSSHSPTAIN,VWVLAFPGFHTFQRAS*TQ*TRQLRRLAPRI*VMNGSSHSPTAIN,VWVLAFPGFHTFQRAS*TQ*TRQLRRLAPRI*VMNGSSHSPTAIN,VWVLAFPGFHTFQRAS*TQ*TRQLRRLAPRI*VMNGSSHSPTAIN,VWVLAFPGFHTFQRAS*TQ*TRQLRRLAPRI*VMNGSSHSPTAIN,VWVLAFPGFHTFQRAS*TQ*TRQLRRLAPRI*VMNGSSHSPTAIN,, PTCH1:NM_000264[1,1]-CBFA2T3:NM_005187[4,12];PTCH1:NM_001083602[1,1]-CBFA2T3:NM_005187[4,12];PTCH1:NM_001083603[1,1]-CBFA2T3:NM_005187[4,12];PTCH1:NM_001083604[1,1]-CBFA2T3:NM_005187[4,12];PTCH1:NM_001083605[1,1]-CBFA2T3:NM_005187[4,12];PTCH1:NM_000264[1,1]-CBFA2T3:NM_175931[3,11];PTCH1:NM_001083602[1,1]-CBFA2T3:NM_175931[3,11];PTCH1:NM_001083603[1,1]-CBFA2T3:NM_175931[3,11];PTCH1:NM_001083604[1,1]-CBFA2T3:NM_175931[3,11];PTCH1:NM_001083605[1,1]-CBFA2T3:NM_175931[3,11];; geneB_transcripts=NM_005187,NM_175931 ,,,,,,,,,,, 0,0,0,0,0,0,0,0,0,0,, SJBALL021856_D1 AUTS2 chr7 70163608 + coding STK39 chr2 169078317 - intron > 1 0 84 40 0.000 0.000 38 1 0.042 0.000 96 94 GGCTCAGTGATTGTGACAGTGACAGTGACCAGGAAGAGAAGGCATCAGATGCCAGCTCTGAAAAACTCTTCAACACTGTTATTGTAAACAAAGGTTGCGCCCCGGTGAGTGCCAGCGTTGCTACATCTTGGTG CTX 0.08 LQ 3 CLoss , NM_001127231,NM_015570 , , , 742,742 , , NM_013233,NM_013233 , , , 208,208 1638,1638 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_013233 , , SJBALL021856_D1 TLK1 chr2 171884848 - coding STK39 chr2 169038602 - coding > 2 0 68 42 0.537 0.000 55 1 0.042 0.000 84 81 AAATTTACCACAACTGTTGACTTTGGCAGAATATCATGAACAGGAAGAAATTTTCAAACTTAGACTAGGACATCTCAAAAAGGCAGTGGAGCTACTGCTGTGGTTCAGGCAGCCCTATGCAA DEL 0.03 LQ 3 Fusion 0,0,0,0 NM_001136554,NM_001136555,NM_012290, ,,, 12,10,12, ,,, 1092,948,1236, ,,, ,,, NM_013233,NM_013233,NM_013233,NM_013233 70,70,70,70 2,2,2, tuple,tuple,tuple,tuple 209,209,209,209 1638,1638,1638,1638 27,27,27, ,,, KFTTTVDFGRIS*TGRNFQT*TRTSQKGSGATAVVQAALC,KFTTTVDFGRIS*TGRNFQT*TRTSQKGSGATAVVQAALC,KFTTTVDFGRIS*TGRNFQT*TRTSQKGSGATAVVQAALC, TLK1:NM_001136554[1,12]-STK39:NM_013233[2,18];TLK1:NM_001136555[1,10]-STK39:NM_013233[2,18];TLK1:NM_012290[1,12]-STK39:NM_013233[2,18]; geneB_transcripts=NM_013233 ,,, 0,0,0, SJBALL021856_D1 CTNNAL1 chr9 111775580 - coding MALT1 chr18 56377206 + coding > 0 2 35 77 0.000 0.000 1 53 0.000 0.037 35 31 GTGGAGCAGACGCTACTCCCGCTGGTTTCTCAGGTGCCTTATGTGGATTTGGAACACCAAGGAACCTACTGGTGTCATGTATATAATGATCGAGACAGTCAAGATAGC CTX 0.02 LQ 2 Fusion 1,1,1,1 NM_001286974,NM_003798,NM_001286974,NM_003798 48,48,48,48 1,1,1,1 perfect,perfect,perfect,perfect 141,141,141,141 10,10,10,10 32,32,32,32 NM_006785,NM_006785,NM_173844,NM_173844 277,277,277,277 6,6,6,6 tuple,tuple,tuple,tuple 829,829,829,829 2475,2475,2442,2442 11,11,11,11 33,33,33,33 VEQTLLPLVSQVPYVDLEHQGTYWCHVYNDRDSQDS,VEQTLLPLVSQVPYVDLEHQGTYWCHVYNDRDSQDS,VEQTLLPLVSQVPYVDLEHQGTYWCHVYNDRDSQDS,VEQTLLPLVSQVPYVDLEHQGTYWCHVYNDRDSQDS CTNNAL1:NM_001286974[1,1]-MALT1:NM_006785[6,17];CTNNAL1:NM_003798[1,1]-MALT1:NM_006785[6,17];CTNNAL1:NM_001286974[1,1]-MALT1:NM_173844[6,16];CTNNAL1:NM_003798[1,1]-MALT1:NM_173844[6,16] geneB_transcripts=NM_006785,NM_173844 ,,, 0,0,0,0 SJBALL021856_D1 B4GALT1 chr9 33166758 - coding NR4A3 chr9 102587940 + 5utr > 0 1 33 103 0.029 0.000 0 32 0.017 0.250 33 33 CTGCCCGCCTGCCCTGAGGAGTCCCCGCTGCTTGAGCCCACTGCGGAAGAGGGCAGCCCGGCAAGCCCGGGCCCTGAGCCTGGACCCTTAGCGGTGCCGGGCAGCACTGCCGGCGCTTCGCCTCGCCGGACGTCCG ITX 0.01 LQ 2 Fusion 1,1,1 NM_001497,NM_001497,NM_001497 138,138,138 1,1,1 tuple,tuple,tuple 410,410,410 10,10,10 32,32,32 NM_006981,NM_173199,NM_173200 -58,-58,-71 2,2,2 tuple,tuple,tuple ,, 1881,1332,1914 14,14,14 42,42,42 LPACPEESPLLEPTAEEGSPASPGPEPGPLAVPGSTAGASPRRTS,LPACPEESPLLEPTAEEGSPASPGPEPGPLAVPGSTAGASPRRTS,LPACPEESPLLEPTAEEGSPASPGPEPGPLAVPGSTAGASPRRTS B4GALT1:NM_001497[1,1]-NR4A3:NM_006981[2,8];B4GALT1:NM_001497[1,1]-NR4A3:NM_173199[2,5];B4GALT1:NM_001497[1,1]-NR4A3:NM_173200[2,9] geneB_transcripts=NM_006981,NM_173199,NM_173200;geneb_utr_codons=13 EPT,EPT,EPT 0,0,0 SJBALL021856_D1 PDXK chr21 45139262 + coding CXCR4 chr2 136873487 - coding > 0 2 56 201 0.000 0.000 1 61 0.000 0.005 56 51 AGAGCCACGTCATCCGCGGCTACGTGGGCAACCGGGCGGCCACGTTCCCGCTGCAGATATACACTTCAGATAACTACACCGAGGAAATGGGCTCAGGGGACTATGACTCCATGAAGGAACCCTGTTTCCGTGAAGAAAATGCTAATTTCAATAAAATCTTCCTGCCCACCATCTACTCCATCATCTTCTTAACTGGCATTGTGGGCAATGGATTGGTCATCCTGGTCATGGGTTACCAGAAGAAACTGAGAA CTX 0.01 LQ 2 Fusion 1,1 NM_003681,NM_003681 28,30 1,1 perfect,perfect 87,87 15,17 49,55 NM_001008540,NM_003467 8,6 1,2 tuple,tuple 23,16 1071,1059 16,18 50,56 SHVIRGYVGNRAATFPLQIYTSDNYTEEMGSGDYDSMKEPCFREENANFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLR,SHVIRGYVGNRAATFPLQIYTSDNYTEEMGSGDYDSMKEPCFREENANFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLR PDXK:NM_003681[1,1]-CXCR4:NM_001008540[1,1];PDXK:NM_003681[1,1]-CXCR4:NM_003467[2,2] geneB_transcripts=NM_001008540,NM_003467 , 2,2 SJBALL021856_D1 GAK chr4 905461 - coding BRD4 chr19 15383946 - 5utr > 0 1 35 119 0.000 0.000 0 32 0.000 0.037 35 33 GGCTGAGTTCCTCTTGCTCACAGAGCTCTGTAAAGAGTGCCTGGTGAAGAATGTGATGGGATCACTAGCATGTCTGCGGAGAGCGGCCCTGGGACGAGATTGAGAAATCTGCCAGTAATGGGGGATGGACTAGAAACTTCCCAAATGTCTAC CTX 0.01 LQ 2 upTSS 0,0,0,0,2,2 NM_001286833,NM_005255,NM_001286833,NM_005255,, ,,,,, 1,4,1,4,, ,,,,, ,382,,382,, ,,,,, ,,,,, NM_014299,NM_014299,NM_058243,NM_058243,NM_014299,NM_058243 -11,-11,-11,-11,-11,-11 2,2,2,2,, tuple,tuple,tuple,tuple,tuple,tuple ,,,,, 2169,2169,4089,4089,2169,4089 14,14,14,14,, ,,,,, G*VPLAHRAL*RVPGEECDGITSMSAESGPGTRLRNLPVMGDGLETSQMS,G*VPLAHRAL*RVPGEECDGITSMSAESGPGTRLRNLPVMGDGLETSQMS,G*VPLAHRAL*RVPGEECDGITSMSAESGPGTRLRNLPVMGDGLETSQMS,G*VPLAHRAL*RVPGEECDGITSMSAESGPGTRLRNLPVMGDGLETSQMS,, GAK:NM_001286833[1,1]-BRD4:NM_014299[2,12];GAK:NM_005255[1,4]-BRD4:NM_014299[2,12];GAK:NM_001286833[1,1]-BRD4:NM_058243[2,20];GAK:NM_005255[1,4]-BRD4:NM_058243[2,20];; geneB_transcripts=NM_014299,NM_058243;geneb_utr_codons=12 ,,,,, 0,0,0,0,, SJBALL021856_D1 SHANK3 chr22 51123079 + coding ZMYM2 chr13 20567435 + coding > 0 2 34 162 0.000 0.000 0 49 0.000 0.022 34 33 GAGGTTATCAAGACCCACAAAGACTCGGATGTTGTGGTAGCTGATCAAAGAACCATAACATTTACATCATCAAAAAATGAAGAACTACAAGGAAATGATTCCAAAATTACTCCTTCCTCAAAAGAGTTGGCATCTCAGAAGGGAAGTGTAAGTGAGACAATTGTCATTGATGATGAAGAGGACATGGAAACAAAT CTX 0.00 LQ 2 Fusion 1,1,1,1 NM_033517,NM_033517,NM_033517,NM_033517 344,344,344,344 ,,, perfect,perfect,perfect,perfect ,,, 10,10,10,10 32,32,32,32 NM_001190964,NM_001190965,NM_003453,NM_197968 75,75,75,75 4,3,4,3 tuple,tuple,tuple,tuple 223,223,223,223 4134,4134,4134,4134 11,11,11,11 33,33,33,33 EVIKTHKDSDVVVADQRTITFTSSKNEELQGNDSKITPSSKELASQKGSVSETIVIDDEEDMETN,EVIKTHKDSDVVVADQRTITFTSSKNEELQGNDSKITPSSKELASQKGSVSETIVIDDEEDMETN,EVIKTHKDSDVVVADQRTITFTSSKNEELQGNDSKITPSSKELASQKGSVSETIVIDDEEDMETN,EVIKTHKDSDVVVADQRTITFTSSKNEELQGNDSKITPSSKELASQKGSVSETIVIDDEEDMETN SHANK3:NM_033517[1,0]-ZMYM2:NM_001190964[4,26];SHANK3:NM_033517[1,0]-ZMYM2:NM_001190965[3,25];SHANK3:NM_033517[1,0]-ZMYM2:NM_003453[4,26];SHANK3:NM_033517[1,0]-ZMYM2:NM_197968[3,25] geneB_transcripts=NM_001190964,NM_001190965,NM_003453,NM_197968 ,,, 0,0,0,0 SJBALL021856_D1 ARL6IP4 chr12 123467085 + coding FUS chr16 31200984 + coding > 0 1 55 92 0.000 0.000 0 53 0.000 0.003 55 53 TGGCGAGGTCCTAGAGGAAATCGTAACCAAAGAACGACACAGAGAGATCAACAAGACAAACAAGAAAACGGGACAGCCCATGATTAATTTGTACACAGACAGGGAAACTGGCAAGCTGAAGGGAGAGGCAACGGTCTCTTTTGATAGATCGGAA CTX 0.00 LQ 2 Fusion 1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1 NM_001002251,NM_001002252,NM_001278378,NM_001278379,NM_001278380,NM_016638,NM_018694,NM_001002251,NM_001002252,NM_001278378,NM_001278379,NM_001278380,NM_016638,NM_018694,NM_001002251,NM_001002252,NM_001278378,NM_001278379,NM_001278380,NM_016638,NM_018694 396,385,348,265,209,385,404,396,385,348,265,209,385,404,396,385,348,265,209,385,404 5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5 perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect 1185,1152,1041,792,624,1152,1209,1185,1152,1041,792,624,1152,1209,1185,1152,1041,792,624,1152,1209 17,17,17,17,17,17,17,17,17,17,17,17,17,17,17,17,17,17,17,17,17 54,54,54,54,54,54,54,54,54,54,54,54,54,54,54,54,54,54,54,54,54 NM_001170634,NM_001170634,NM_001170634,NM_001170634,NM_001170634,NM_001170634,NM_001170634,NM_001170937,NM_001170937,NM_001170937,NM_001170937,NM_001170937,NM_001170937,NM_001170937,NM_004960,NM_004960,NM_004960,NM_004960,NM_004960,NM_004960,NM_004960 312,312,312,312,312,312,312,309,309,309,309,309,309,309,313,313,313,313,313,313,313 10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10 tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 934,934,934,934,934,934,934,925,925,925,925,925,925,925,937,937,937,937,937,937,937 1578,1578,1578,1578,1578,1578,1578,1569,1569,1569,1569,1569,1569,1569,1581,1581,1581,1581,1581,1581,1581 18,18,18,18,18,18,18,18,18,18,18,18,18,18,18,18,18,18,18,18,18 55,55,55,55,55,55,55,55,55,55,55,55,55,55,55,55,55,55,55,55,55 GEVLEEIVTKERHREINKTNKKTGQPMINLYTDRETGKLKGEATVSFDRSE,GEVLEEIVTKERHREINKTNKKTGQPMINLYTDRETGKLKGEATVSFDRSE,GEVLEEIVTKERHREINKTNKKTGQPMINLYTDRETGKLKGEATVSFDRSE,GEVLEEIVTKERHREINKTNKKTGQPMINLYTDRETGKLKGEATVSFDRSE,GEVLEEIVTKERHREINKTNKKTGQPMINLYTDRETGKLKGEATVSFDRSE,GEVLEEIVTKERHREINKTNKKTGQPMINLYTDRETGKLKGEATVSFDRSE,GEVLEEIVTKERHREINKTNKKTGQPMINLYTDRETGKLKGEATVSFDRSE,GEVLEEIVTKERHREINKTNKKTGQPMINLYTDRETGKLKGEATVSFDRSE,GEVLEEIVTKERHREINKTNKKTGQPMINLYTDRETGKLKGEATVSFDRSE,GEVLEEIVTKERHREINKTNKKTGQPMINLYTDRETGKLKGEATVSFDRSE,GEVLEEIVTKERHREINKTNKKTGQPMINLYTDRETGKLKGEATVSFDRSE,GEVLEEIVTKERHREINKTNKKTGQPMINLYTDRETGKLKGEATVSFDRSE,GEVLEEIVTKERHREINKTNKKTGQPMINLYTDRETGKLKGEATVSFDRSE,GEVLEEIVTKERHREINKTNKKTGQPMINLYTDRETGKLKGEATVSFDRSE,GEVLEEIVTKERHREINKTNKKTGQPMINLYTDRETGKLKGEATVSFDRSE,GEVLEEIVTKERHREINKTNKKTGQPMINLYTDRETGKLKGEATVSFDRSE,GEVLEEIVTKERHREINKTNKKTGQPMINLYTDRETGKLKGEATVSFDRSE,GEVLEEIVTKERHREINKTNKKTGQPMINLYTDRETGKLKGEATVSFDRSE,GEVLEEIVTKERHREINKTNKKTGQPMINLYTDRETGKLKGEATVSFDRSE,GEVLEEIVTKERHREINKTNKKTGQPMINLYTDRETGKLKGEATVSFDRSE,GEVLEEIVTKERHREINKTNKKTGQPMINLYTDRETGKLKGEATVSFDRSE ARL6IP4:NM_001002251[1,5]-FUS:NM_001170634[10,15];ARL6IP4:NM_001002252[1,5]-FUS:NM_001170634[10,15];ARL6IP4:NM_001278378[1,5]-FUS:NM_001170634[10,15];ARL6IP4:NM_001278379[1,5]-FUS:NM_001170634[10,15];ARL6IP4:NM_001278380[1,5]-FUS:NM_001170634[10,15];ARL6IP4:NM_016638[1,5]-FUS:NM_001170634[10,15];ARL6IP4:NM_018694[1,5]-FUS:NM_001170634[10,15];ARL6IP4:NM_001002251[1,5]-FUS:NM_001170937[10,15];ARL6IP4:NM_001002252[1,5]-FUS:NM_001170937[10,15];ARL6IP4:NM_001278378[1,5]-FUS:NM_001170937[10,15];ARL6IP4:NM_001278379[1,5]-FUS:NM_001170937[10,15];ARL6IP4:NM_001278380[1,5]-FUS:NM_001170937[10,15];ARL6IP4:NM_016638[1,5]-FUS:NM_001170937[10,15];ARL6IP4:NM_018694[1,5]-FUS:NM_001170937[10,15];ARL6IP4:NM_001002251[1,5]-FUS:NM_004960[10,15];ARL6IP4:NM_001002252[1,5]-FUS:NM_004960[10,15];ARL6IP4:NM_001278378[1,5]-FUS:NM_004960[10,15];ARL6IP4:NM_001278379[1,5]-FUS:NM_004960[10,15];ARL6IP4:NM_001278380[1,5]-FUS:NM_004960[10,15];ARL6IP4:NM_016638[1,5]-FUS:NM_004960[10,15];ARL6IP4:NM_018694[1,5]-FUS:NM_004960[10,15] geneB_transcripts=NM_001170634,NM_001170937,NM_004960 ,,,,,,,,,,,,,,,,,,,, 1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1 SJBALL021856_D1 CXCR4 chr2 136875616 - coding SEPT9 chr17 75478226 + coding > 0 6 93 33 0.000 0.000 0 312 0.003 0.000 102 102 TCTTCCAGATGCGGCAGCAGGTAGCAAAGTGACGCCGAGGGCCTGAGTGCTCCAGTAGCCACCGCATCTGGAGAACCAGCGGTTACCATGGAGGGGATCAGTCCACTGAGGCGGCTCCCAGCTGCGTTGGCGACA CTX 0.00 LQ 3 Fusion 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 NM_003467,NM_003467,NM_003467,NM_003467,NM_003467,NM_003467,NM_003467,NM_003467,,,,,,,, ,,,,,,,,,,,,,,, 1,1,1,1,1,1,1,1,,,,,,,, ,,,,,,,,,,,,,,, 15,15,15,15,15,15,15,15,,,,,,,, ,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,, NM_001113491,NM_001113492,NM_001113493,NM_001113494,NM_001113495,NM_001293695,NM_001293696,NM_006640,NM_001113491,NM_001113492,NM_001113493,NM_001113494,NM_001113495,NM_001293695,NM_001293696,NM_006640 241,77,234,77,129,222,17,223,241,77,234,77,129,222,17,223 4,4,3,3,2,3,2,3,,,,,,,, blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat 722,230,701,230,386,665,50,668,722,230,701,230,386,665,50,668 1761,1269,1740,1269,1425,1704,1089,1707,1761,1269,1740,1269,1425,1704,1089,1707 34,34,34,34,32,34,34,34,,,,,,,, ,,,,,,,,,,,,,,, FQMRQQVAK*RRGPECSSSHRIWRTSGYHGGDQSTEAAPSCVGD,FQMRQQVAK*RRGPECSSSHRIWRTSGYHGGDQSTEAAPSCVGD,FQMRQQVAK*RRGPECSSSHRIWRTSGYHGGDQSTEAAPSCVGD,FQMRQQVAK*RRGPECSSSHRIWRTSGYHGGDQSTEAAPSCVGD,FQMRQQVAK*RRGPECSSSHRIWRTSGYHGGDQSTEAAPSCVGD,FQMRQQVAK*RRGPECSSSHRIWRTSGYHGGDQSTEAAPSCVGD,FQMRQQVAK*RRGPECSSSHRIWRTSGYHGGDQSTEAAPSCVGD,FQMRQQVAK*RRGPECSSSHRIWRTSGYHGGDQSTEAAPSCVGD,,,,,,,, CXCR4:NM_003467[1,1]-SEPT9:NM_001113491[4,12];CXCR4:NM_003467[1,1]-SEPT9:NM_001113492[4,12];CXCR4:NM_003467[1,1]-SEPT9:NM_001113493[3,11];CXCR4:NM_003467[1,1]-SEPT9:NM_001113494[3,11];CXCR4:NM_003467[1,1]-SEPT9:NM_001113495[2,10];CXCR4:NM_003467[1,1]-SEPT9:NM_001293695[3,11];CXCR4:NM_003467[1,1]-SEPT9:NM_001293696[2,10];CXCR4:NM_003467[1,1]-SEPT9:NM_006640[3,11];;;;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001113491,NM_001113492,NM_001113493,NM_001113494,NM_001113495,NM_001113496,NM_001293695,NM_001293696,NM_001293697,NM_001293698,NM_006640;geneb_utr_codons=11 ,,,,,,,,,,,,,,, 2,2,2,2,2,2,2,2,,,,,,,, SJBALL021856_D1 LOC100505718 chr8 70041942 + intergenic TCF3 chr19 1650291 - 5utr > 0 4 34 191 0.558 0.000 1 109 0.000 0.000 35 42 AGGGCCTGCAGCGGGAGCTGGACGGCGAGCGCGAGCGGGGCGAGCAGGGTTTCCAGGCCTGAGGTGCCCGCCCTGGCCCCAGGAGAATGAACCAGCCGCAGAGGATGGCGCCTGTGGGCACAGACAAGGAGCTCAGTGACCTCCTGGACTTCAGCATGATGTTCCCGCTGCCTGTCACCAACGGGAAGGGCCGGCCCGCCTCCCTGGCCGGGGCGCAGTTCGGAGGTTCAGGTCTTGAGG CTX 0.00 LQ 2 upTSS 2 NM_003200 -12 tuple 1965 geneA_no_transcript_IDs_found geneB_transcripts=NM_003200;geneb_utr_codons=13 SJBALL021856_D1 RNF19A chr8 101281013 - coding COX6C chr8 100899847 - coding > 2 2 80 67 0.000 0.000 87 115 0.000 0.000 80 80 CTCCTGTCGGAATCGCTTTAATAGCTGGCATTGCTATTCCTGCAATGATTATTGGCATTCCTGTGTATGTGGGCCGCAAGTTTCGTGTGGCTGATCAAAGAAAGAAGGCATACGCAGATTTCTACAGAAACTACGATGTCATGAAA DEL 0.00 LQ 2 Fusion 1,1,1 NM_001280539,NM_015435,NM_183419 398,398,398 6,6,5 perfect,perfect,perfect 1191,1191,1191 25,25,25 79,79,79 NM_004374,NM_004374,NM_004374 39,39,39 3,3,3 tuple,tuple,tuple 115,115,115 228,228,228 26,26,26 80,80,80 PVGIALIAGIAIPAMIIGIPVYVGRKFRVADQRKKAYADFYRNYDVMK,PVGIALIAGIAIPAMIIGIPVYVGRKFRVADQRKKAYADFYRNYDVMK,PVGIALIAGIAIPAMIIGIPVYVGRKFRVADQRKKAYADFYRNYDVMK RNF19A:NM_001280539[1,6]-COX6C:NM_004374[3,4];RNF19A:NM_015435[1,6]-COX6C:NM_004374[3,4];RNF19A:NM_183419[1,5]-COX6C:NM_004374[3,4] geneB_transcripts=NM_004374 ,, 2,2,2 SJBALL021856_D1 TBL1XR1 chr3 176700168 - intergenic NA chr3 176679839 - intergenic > 4 14 229 170 0.000 0.000 340 546 0.100 0.000 229 229 CCCGCGCCCTCCGCTCGCTGGGGTTATAATTGCCTCTCACCCCCCGGAGGGGTTATTTTGGGGGTGGTTGGAGGCGGTGGCGGCGGCGGCGAGGAGGGGAATTTCCTTGTGCCTCCATTCCCGGGAGGGGGGAGCGGCGTTGGAGGCCACCGTTTCCAGATCTCCTTGAGTGTGTGATGACAGTGACCGGGAATGAATTCTAGACTCACCTCATACCACCTTTTTTTAGAGAGGTGTATGAGCAGATGAACAGCCTTATAAGAGCCAATCTTCTAAAATTCAGGGTTCTTCTCCTGTGGTGCACCTTACTGCATGAGCAGGGTCTTACTCTGTCACCCAGGCTGGAGTGCAGTGGCACAGGAACATGGCTTCCTGCAGCCTCGACCCCTGGCTAACAGTTTTGGTGCT read_through 34.00 RT 1 other 0 NM_024665 geneB_no_transcripts