Validation Log 2025-12-14 20:59:38.171830 mwtab Python Library Version: 2.0.0 Source: https://www.metabolomicsworkbench.org/rest/study/analysis_id/AN000026/mwtab/txt Study ID: ST000010 Analysis ID: AN000026 File format: txt Status: Contains Validation Issues Number of Issues: 25 Number of Warnings: 7 Number of Value Errors: 17 Number of Consistency Errors: 2 Number of Format Errors: 5 Issue Log: Error: An empty value or a null value was detected for the subsection, "ADDRESS", in the "PROJECT" section. A legitimate value should be provided for this required subsection. Error: An empty value or a null value was detected for the subsection, "PHONE", in the "PROJECT" section. A legitimate value should be provided for this required subsection. Error: An empty value or a null value was detected for the subsection, "ADDRESS", in the "STUDY" section. A legitimate value should be provided for this required subsection. Error: An empty value or a null value was detected for the subsection, "PHONE", in the "STUDY" section. A legitimate value should be provided for this required subsection. Error: An empty value or a null value was detected for the subsection, "COLLECTION_SUMMARY", in the "COLLECTION" section. A legitimate value should be provided for this required subsection. Error: An empty value or a null value was detected for the subsection, "TREATMENT_SUMMARY", in the "TREATMENT" section. A legitimate value should be provided for this required subsection. Error: An empty value or a null value was detected for the subsection, "SAMPLEPREP_SUMMARY", in the "SAMPLEPREP" section. A legitimate value should be provided for this required subsection. Error: An empty value or a null value was detected for the subsection, "MS_COMMENTS", in the "MS" section. Either a legitimate value should be provided for this subsection, or it should be removed altogether. Error: An empty value or a null value was detected for the subsection, "CHROMATOGRAPHY_TYPE", in the "CHROMATOGRAPHY" section. A legitimate value should be provided for this required subsection. Error: An empty value or a null value was detected for the subsection, "INSTRUMENT_NAME", in the "CHROMATOGRAPHY" section. A legitimate value should be provided for this required subsection. Error: An empty value or a null value was detected for the subsection, "COLUMN_NAME", in the "CHROMATOGRAPHY" section. A legitimate value should be provided for this required subsection. Error: The required property, "FLOW_GRADIENT", in the "CHROMATOGRAPHY" section is missing. Error: The required property, "FLOW_RATE", in the "CHROMATOGRAPHY" section is missing. Error: The required property, "COLUMN_TEMPERATURE", in the "CHROMATOGRAPHY" section is missing. Error: The required property, "SOLVENT_A", in the "CHROMATOGRAPHY" section is missing. Error: The required property, "SOLVENT_B", in the "CHROMATOGRAPHY" section is missing. Error: The following metabolites in the, MS_METABOLITE_DATA table were not found in the METABOLITES table: "11BETA_21-DIHYDROXY-5BETA-PREGNANE-3_20-DIONE" "11-BETA-HYDROXYANDROST-4-ENE-3_17-DIONE" "2_3_5_6-TETRACHLOROPHENOL" "2_5-DIOXOPIPERAZINE" "2-CARBOXY-2_3-DIHYDRO-5_6-DIHYDROXYINDOLE" "2^-DEOXYURIDINE 5^-MONOPHOSPHATE" "3_4-DIHYDROXYBENZOATE" "3_4-DIHYDROXYPHENYL GLYCOL" "3ALPHA_7ALPHA_12ALPHA-TRIHYDROXY-5BETA-CHOLESTANOATE" "3ALPHA_7ALPHA-DIHYDROXY-5BETA-CHOLESTANATE" "4-(2-AMINO-3-HYDROXYPHENYL)-2_4-DIOXOBUTANOATE" "4-ANDROSTEN-3BETA_17BETA-DIOL DISULFATE" "5_6-DIHYDROURACIL" "ADENOSINE 3`_5`-CYCLIC MONOPHOSPHATE" "FRUCTOSE 1_6-BIPHOSPHATE" "GULONO-1_4-LACTONE" "PYRIDINE-2_3-DICARBOXYLATE" "XANTHOSINE 5^-MONOPHOSPHATE" Error: The following metabolites in the METABOLITES table were not found in the MS_METABOLITE_DATA table: "11BETA,21-DIHYDROXY-5BETA-PREGNANE-3,20-DIONE" "2-CARBOXY-2,3-DIHYDRO-5,6-DIHYDROXYINDOLE" "2'-DEOXYURIDINE 5'-MONOPHOSPHATE" "3ALPHA,7ALPHA,12ALPHA-TRIHYDROXY-5BETA-CHOLESTANOATE" "3ALPHA,7ALPHA-DIHYDROXY-5BETA-CHOLESTANATE" "4-(2-AMINO-3-HYDROXYPHENYL)-2,4-DIOXOBUTANOATE" "4-ANDROSTEN-3BETA,17BETA-DIOL DISULFATE" "ADENOSINE 3`,5`-CYCLIC MONOPHOSPHATE" "XANTHOSINE 5'-MONOPHOSPHATE" Warning: The "ri" column at position 3 in the METABOLITES table, matches a standard column name, "retention_index". If this match was not in error, the column should be renamed to the standard name or a name that doesn't resemble the standard name. Warning: The "ri_type" column at position 4 in the METABOLITES table, matches a standard column name, "retention_index_type". If this match was not in error, the column should be renamed to the standard name or a name that doesn't resemble the standard name. Warning: The standard column, "other_id", was found in the METABOLITES table as "other_id". If this column contains database IDs for standard databases such as KEGG, PubChem, HMDB, etc., it is recommended to make individual columns for these and not lump them together into a less descriptive "other_id" column. Warning: The "moverz_quant" column at position 2 in the METABOLITES table has all null values. Warning: The "ri" column at position 3 in the METABOLITES table has all null values. Warning: The "ri_type" column at position 4 in the METABOLITES table has all null values. Warning: The "inchi_key" column at position 6 in the METABOLITES table has all null values.