Validation Log 2025-12-14 21:00:05.907608 mwtab Python Library Version: 2.0.0 Source: https://www.metabolomicsworkbench.org/rest/study/analysis_id/AN000033/mwtab/json Study ID: ST000016 Analysis ID: AN000033 File format: json Status: Contains Validation Issues Number of Issues: 15 Number of Warnings: 7 Number of Value Errors: 12 Number of Consistency Errors: 2 Number of Format Errors: 0 Issue Log: Error: An empty value or a null value was detected in ["STUDY"]["ADDRESS"]. A legitimate value should be provided for this required key. Error: An empty value or a null value was detected in ["COLLECTION"]["COLLECTION_SUMMARY"]. A legitimate value should be provided for this required key. Error: An empty value or a null value was detected in ["TREATMENT"]["TREATMENT_SUMMARY"]. A legitimate value should be provided for this required key. Error: An empty value or a null value was detected in ["SAMPLEPREP"]["SAMPLEPREP_SUMMARY"]. A legitimate value should be provided for this required key. Error: An empty value or a null value was detected in ["MS"]["MS_COMMENTS"]. Either a legitimate value should be provided for this key, or it should be removed altogether. Error: The value, "40C", in ["CHROMATOGRAPHY"]["COLUMN_TEMPERATURE"] should be a number or range (ex. "5-6") followed by a space with a unit (ex. "5 V") from the following list: ['°C', 'C']. Ignore this when more complicated descriptions are required. Error: The following metabolites in the, ["MS_METABOLITE_DATA"]["Data"] table were not found in the ["MS_METABOLITE_DATA"]["Metabolites"] table: "11-BETA-HYDROXYANDROST-4-ENE-3_17-DIONE" "1_2-DIDECANOYL-SN-GLYCERO-3-PHOSPHOCHOLINE" "1_2-DIPALMITOYL-SN-GLYCEROL" "2_3-DIAMINOPROPIONIC ACID" "2_3-DIAMINOPROPIONIC ACID_1" "2_4-DIHYDROXYPTERIDINE" "2_5-DIMETHYLPYRAZINE" "2_6-DIHYDROXYPYRIDINE" "2^-DEOXYADENOSINE" "2^-DEOXYADENOSINE 5^-MONOPHOSPHATE" "2^-DEOXYCYTIDINE" "2^-DEOXYCYTIDINE 5^-MONOPHOSPHATE" "2^-DEOXYGUANOSINE 5^-DIPHOSPHATE" "2-HYDROXY-4-(METHYLTHIO)BUTYRIC ACID_1" "2-HYDROXYBUTYRIC ACID_1" "3_3^_5-TRIIODO-L-THYRONINE" "3_3^-DITHIODIVALINE" "3_4-DIHYDROXYBENZOATE" "3_4-DIHYDROXY-L-PHENYLALANINE" "3_4-DIHYDROXYPHENYLACETATE" "3_4-DIHYDROXYPHENYL GLYCOL" "3_5-DIIODO-L-THYRONINE" "3_5-DIIODO-L-TYROSINE" "3-ALPHA_11-BETA_17-ALPHA_21-TETRAHYDROXY- 5-ALPHA-PREGNAN-20-ONE" "3^-CMP" "3-(CYSTEIN-S-YL)ACETAMINOPHEN_1" "3^-DEPHOSPHO COA" "5ALPHA-PREGNANE-3_20-DIONE" "5^-DEOXYADENOSINE" "5-METHYLCYTOSINE_1" "6_7-DIHYDROBIOPTERIN" "ADENOSINE 2^_3^-CYCLIC MONOPHOSPHATE" "ADENOSINE 3^_5^-CYCLIC MONOPHOSPHATE" "ADENOSINE 5^-MONOPHOSPHATE" "CHOLESTA-5_7-DIEN-3BETA-OL" "CORTISOL 21-ACETATE_1" "CYCLOHEXANE-1_3-DIONE" "CYS-GLY_ OXIDIZED" "CYSTINE_1" "CYTIDINE 2`_3`-CYCLIC MONOPHOSPHATE (CCMP)" "CYTIDINE 5^-DIPHOSPHOCHOLINE" "DEOXYURIDINE_1" "D-GLUCONO-1_5-LACTONE" "DIHYDROFOLATE_1" "DIMETHYL MALEATE_1" "DOCOSAHEXAENOYLGLYCEROPHOSPHOCHOLINE_1" "ENKEPHALINE_ (D-ALA)2-LEU" "FOLIC ACID_1" "FRUCTOSE 1_6-BIPHOSPHATE" "GLUTAMINE_1" "GLUTATHIONE OXIDIZED_1" "GUANOSINE 3`_5`-CYCLIC MONOPHOSPHATE" "GUANOSINE 5^-DIPHOSPHATE" "GUANOSINE 5^ MONOPHOSPHATE" "INOSINE 5^-DIPHOSPHATE" "INOSINE 5^-MONOPHOSPHATE" "LL-2_6-DIAMINOHEPTANEDIOATE" "METHYL JASMONATE_1" "MYRISTOYLGLYCEROPHOSPHOCHOLINE_1" "N-ACETYL-DL-METHIONINE_1" "N-ACETYL-L-ASPARTIC ACID_1" "N-CYCLOHEXYLFORMAMIDE_1" "N_N-DIMETHYL-1_4-PHENYLENEDIAMINE" "N_N_N-TRIMETHYLLYSINE" "OROTIDINE 5^-MONOPHOSPHATE" "POSSIBLY C42H80NO7P_ Na ADDUCT" "PROMETRYN_1" "RIBULOSE 1_5-BISPHOSPHATE" "SUCCINATE_1" "THYMIDINE-5^-DIPHOSPHO-ALPHA-D-GLUCOSE" "TRANS-CYCLOHEXANE-1_2-DIOL" "URATE_1" "UREA_1" "URIDINE 5^-DIPHOSPHATE" "URIDINE 5^-DIPHOSPHO-N-ACETYLGALACTOSAMINE" "XANTHOSINE 5^-MONOPHOSPHATE" Error: The following metabolites in the ["MS_METABOLITE_DATA"]["Metabolites"] table were not found in the ["MS_METABOLITE_DATA"]["Data"] table: "2'-DEOXYADENOSINE" "2'-DEOXYADENOSINE 5'-MONOPHOSPHATE" "2'-DEOXYCYTIDINE" "2'-DEOXYCYTIDINE 5'-MONOPHOSPHATE" "2'-DEOXYGUANOSINE 5'-DIPHOSPHATE" "2-HYDROXY-4-(METHYLTHIO)BUTYRIC ACID_2" "2-HYDROXYBUTYRIC ACID_2" "3,3',5-TRIIODO-L-THYRONINE" "3,3'-DITHIODIVALINE" "3'-CMP" "3-(CYSTEIN-S-YL)ACETAMINOPHEN_2" "3'-DEPHOSPHO COA" "5'-DEOXYADENOSINE" "5-METHYLCYTOSINE_2" "ADENOSINE 2',3'-CYCLIC MONOPHOSPHATE" "ADENOSINE 3',5'-CYCLIC MONOPHOSPHATE" "ADENOSINE 5'-MONOPHOSPHATE" "CORTISOL 21-ACETATE_2" "CYSTINE_2" "CYTIDINE 5'-DIPHOSPHOCHOLINE" "DEOXYURIDINE_2" "DIHYDROFOLATE_2" "DIMETHYL MALEATE_2" "DOCOSAHEXAENOYLGLYCEROPHOSPHOCHOLINE_2" "FOLIC ACID_2" "GLUTAMINE_2" "GLUTATHIONE OXIDIZED_2" "GUANOSINE 5'-DIPHOSPHATE" "GUANOSINE 5' MONOPHOSPHATE" "INOSINE 5'-DIPHOSPHATE" "INOSINE 5'-MONOPHOSPHATE" "METHYL JASMONATE_2" "MYRISTOYLGLYCEROPHOSPHOCHOLINE_2" "N-ACETYL-DL-METHIONINE_2" "N-ACETYL-L-ASPARTIC ACID_2" "N-CYCLOHEXYLFORMAMIDE_2" "OROTIDINE 5'-MONOPHOSPHATE" "PROMETRYN_2" "SUCCINATE_2" "THYMIDINE-5'-DIPHOSPHO-ALPHA-D-GLUCOSE" "URATE_2" "UREA_2" "URIDINE 5'-DIPHOSPHATE" "URIDINE 5'-DIPHOSPHO-N-ACETYLGALACTOSAMINE" "XANTHOSINE 5'-MONOPHOSPHATE" Warning: The "ri" column at position 3 in the ["MS_METABOLITE_DATA"]["Metabolites"] table, matches a standard column name, "retention_index". If this match was not in error, the column should be renamed to the standard name or a name that doesn't resemble the standard name. Warning: The "ri_type" column at position 4 in the ["MS_METABOLITE_DATA"]["Metabolites"] table, matches a standard column name, "retention_index_type". If this match was not in error, the column should be renamed to the standard name or a name that doesn't resemble the standard name. Warning: The standard column, "other_id", was found in the METABOLITES table as "other_id". If this column contains database IDs for standard databases such as KEGG, PubChem, HMDB, etc., it is recommended to make individual columns for these and not lump them together into a less descriptive "other_id" column. Warning: The "moverz_quant" column at position 2 in the ["MS_METABOLITE_DATA"]["Metabolites"] table has all null values. Warning: The "ri" column at position 3 in the ["MS_METABOLITE_DATA"]["Metabolites"] table has all null values. Warning: The "ri_type" column at position 4 in the ["MS_METABOLITE_DATA"]["Metabolites"] table has all null values. Warning: The "inchi_key" column at position 6 in the ["MS_METABOLITE_DATA"]["Metabolites"] table has all null values.