Validation Log 2025-12-14 22:44:12.094083 mwtab Python Library Version: 2.0.0 Source: https://www.metabolomicsworkbench.org/rest/study/analysis_id/AN001698/mwtab/json Study ID: ST001037 Analysis ID: AN001698 File format: json Status: Contains Validation Issues Number of Issues: 30 Number of Warnings: 10 Number of Value Errors: 25 Number of Consistency Errors: 0 Number of Format Errors: 5 Issue Log: Error: An empty value or a null value was detected in ["PROJECT"]["FUNDING_SOURCE"]. Either a legitimate value should be provided for this key, or it should be removed altogether. Error: An empty value or a null value was detected in ["PROJECT"]["PROJECT_COMMENTS"]. Either a legitimate value should be provided for this key, or it should be removed altogether. Error: An empty value or a null value was detected in ["STUDY"]["STUDY_COMMENTS"]. Either a legitimate value should be provided for this key, or it should be removed altogether. Error: An empty value or a null value was detected in ["SUBJECT"]["GENOTYPE_STRAIN"]. Either a legitimate value should be provided for this key, or it should be removed altogether. Error: The value, "NA", in ["SUBJECT"]["AGE_OR_AGE_RANGE"] should be a number or range (ex. "5-6") followed by a space with a unit (ex. "5 V") from the following list: ['weeks', 'days', 'months', 'years']. Ignore this when more complicated descriptions are required. Error: An empty value or a null value was detected in ["SUBJECT"]["HUMAN_RACE"]. Either a legitimate value should be provided for this key, or it should be removed altogether. Error: An empty value or a null value was detected in ["COLLECTION"]["COLLECTION_METHOD"]. Either a legitimate value should be provided for this key, or it should be removed altogether. Error: An empty value or a null value was detected in ["SAMPLEPREP"]["SAMPLEPREP_PROTOCOL_COMMENTS"]. Either a legitimate value should be provided for this key, or it should be removed altogether. Error: An empty value or a null value was detected in ["SAMPLEPREP"]["EXTRACT_ENRICHMENT"]. Either a legitimate value should be provided for this key, or it should be removed altogether. Error: An empty value or a null value was detected in ["SAMPLEPREP"]["EXTRACT_CLEANUP"]. Either a legitimate value should be provided for this key, or it should be removed altogether. Error: An empty value or a null value was detected in ["SAMPLEPREP"]["SAMPLE_RESUSPENSION"]. Either a legitimate value should be provided for this key, or it should be removed altogether. Error: An empty value or a null value was detected in ["SAMPLEPREP"]["SUBCELLULAR_LOCATION"]. Either a legitimate value should be provided for this key, or it should be removed altogether. Error: The value, "1 ml/min", in ["MS"]["HELIUM_FLOW"] should be a number followed by a space with a unit (ex. "5 V") from the following list: ['mL/min']. Ignore this when more complicated descriptions are required. Error: The value, "250", in ["MS"]["ION_SOURCE_TEMPERATURE"] should be a number followed by a space with a unit (ex. "5 V") from the following list: ['°C', 'C']. Ignore this when more complicated descriptions are required. Error: An empty value or a null value was detected in ["MS"]["MS_COMMENTS"]. Either a legitimate value should be provided for this key, or it should be removed altogether. Error: The required property, "FLOW_GRADIENT", in ["CHROMATOGRAPHY"] is missing. Error: The required property, "FLOW_RATE", in ["CHROMATOGRAPHY"] is missing. Error: The required property, "COLUMN_TEMPERATURE", in ["CHROMATOGRAPHY"] is missing. Error: The required property, "SOLVENT_A", in ["CHROMATOGRAPHY"] is missing. Error: The required property, "SOLVENT_B", in ["CHROMATOGRAPHY"] is missing. Warning: The "quantified m/z" column at position 3 in the ["MS_METABOLITE_DATA"]["Metabolites"] table, matches a standard column name, "moverz_quant". If this match was not in error, the column should be renamed to the standard name or a name that doesn't resemble the standard name. Warning: The "InChIKey" column at position 6 in the ["MS_METABOLITE_DATA"]["Metabolites"] table, matches a standard column name, "inchi_key". If this match was not in error, the column should be renamed to the standard name or a name that doesn't resemble the standard name. Warning: The "Library Hit Name" column at position 10 in the ["MS_METABOLITE_DATA"]["Metabolites"] table, matches a standard column name, "name". If this match was not in error, the column should be renamed to the standard name or a name that doesn't resemble the standard name. Warning: The "PubChem ID" column at position 4 in the ["MS_METABOLITE_DATA"]["Metabolites"] table, matches a standard column name, "pubchem_id". If this match was not in error, the column should be renamed to the standard name or a name that doesn't resemble the standard name. Warning: The "KEGG I" column at position 5 in the ["MS_METABOLITE_DATA"]["Metabolites"] table, matches a standard column name, "kegg_id". If this match was not in error, the column should be renamed to the standard name or a name that doesn't resemble the standard name. Warning: The "Human Metabolome Database" column at position 9 in the ["MS_METABOLITE_DATA"]["Metabolites"] table, matches a standard column name, "hmdb_id". If this match was not in error, the column should be renamed to the standard name or a name that doesn't resemble the standard name. Warning: The "LipidMAPS" column at position 8 in the ["MS_METABOLITE_DATA"]["Metabolites"] table, matches a standard column name, "lm_id". If this match was not in error, the column should be renamed to the standard name or a name that doesn't resemble the standard name. Warning: The "ChEBI" column at position 7 in the ["MS_METABOLITE_DATA"]["Metabolites"] table, matches a standard column name, "chebi_id". If this match was not in error, the column should be renamed to the standard name or a name that doesn't resemble the standard name. Warning: The "ChEBI" column at position 7 in the ["MS_METABOLITE_DATA"]["Metabolites"] table, matches a standard column name, "chebi_id", and some of the values in the column do not match the expected type or format for that column. The non-matching values are: 0 CHEBI:67040 1 CHEBI:16027 2 CHEBI:16680 4 CHEBI:16977 5 CHEBI:18019 6 CHEBI:15904 7 CHEBI:16467 8 CHEBI:17115 9 CHEBI:16828 10 CHEBI:17295 11 CHEBI:16199 13 CHEBI:15956 14 CHEBI:15971 15 CHEBI:17203 16 CHEBI:30769 17 CHEBI:30746 18 CHEBI:16414 19 CHEBI:16857 20 CHEBI:15429 21 CHEBI:17748 22 CHEBI:15891 23 CHEBI:15756 24 CHEBI:28189 25 CHEBI:15699 26 CHEBI:17775 27 CHEBI:15333 28 CHEBI:16750 29 CHEBI:17191 30 CHEBI:15887 32 CHEBI:30837 33 CHEBI:27470 34 CHEBI:17755 35 CHEBI:45353 36 CHEBI:16359 37 CHEBI:15746 38 CHEBI:16962 39 CHEBI:16353 40 CHEBI:15842 41 CHEBI:17590 42 CHEBI:78320 43 CHEBI:17814 44 CHEBI:17658 45 CHEBI:7476 46 CHEBI:5855 47 CHEBI:17351 48 CHEBI:29019 50 CHEBI:29069 51 CHEBI:10096 52 CHEBI:28748 53 CHEBI:3697 55 CHEBI:18183 56 CHEBI:17687 57 CHEBI:36405 59 CHEBI:15353 60 CHEBI:17390 61 CHEBI:30853 62 CHEBI:18145 63 CHEBI:17752 64 CHEBI:28680 65 CHEBI:15694 66 CHEBI:15919 67 CHEBI:35940 68 CHEBI:2332 69 CHEBI:15558 70 CHEBI:28368 71 CHEBI:16415 72 CHEBI:28875 73 CHEBI:28822 74 CHEBI:28971 75 CHEBI:3699 76 CHEBI:38565 78 CHEBI:9449 80 CHEBI:77733 81 CHEBI:45409 82 CHEBI:7447 83 CHEBI:63622 84 CHEBI:7823 85 CHEBI:8364 87 CHEBI:8430 88 CHEBI:7959 90 CHEBI:5959 91 CHEBI:6649 92 CHEBI:8805 93 CHEBI:8228 94 CHEBI:8024 96 CHEBI:247956 97 CHEBI:2569 98 CHEBI:28716 100 CHEBI:4853 101 CHEBI:8633 102 CHEBI:9714 103 CHEBI:7554 104 CHEBI:8866 105 CHEBI:83453 106 CHEBI:8248 107 CHEBI:7307 108 CHEBI:9339 109 CHEBI:51574 110 CHEBI:32159 112 CHEBI:8232 113 CHEBI:34445 114 CHEBI:34682 115 CHEBI:35060 116 CHEBI:34694 117 CHEBI:34146 118 CHEBI:50450 119 CHEBI:78796 120 CHEBI:222828 121 CHEBI:48300 122 CHEBI:80845 123 CHEBI:81732 124 CHEBI:38452 125 CHEBI:26276 126 CHEBI:81833 128 CHEBI:38508 129 CHEBI:81957 130 CHEBI:81971 131 CHEBI:30263 132 CHEBI:20794 133 CHEBI:4717 134 CHEBI:5893 135 CHEBI:8776 137 CHEBI:3385 138 CHEBI:32168 140 CHEBI:32315 141 CHEBI:601027 143 CHEBI:51141 144 CHEBI:64216 145 CHEBI:64045 146 CHEBI:37924 148 CHEBI:49105 149 CHEBI:18338 156 CHEBI:503442 166 CHEBI:72631 172 CHEBI:83535 173 CHEBI:30932 181 CHEBI:38321 185 CHEBI:83481 189 CHEBI:76341 202 CHEBI:63866 205 CHEBI:65054 216 CHEBI:72615 223 CHEBI:83543 227 CHEBI:62805 230 CHEBI:83502 231 CHEBI:77443 232 CHEBI:83500 239 CHEBI:24848 240 CHEBI:32365 241 CHEBI:84796 242 CHEBI:70476 249 CHEBI:50572 250 CHEBI:50572 260 CHEBI:75627 280 CHEBI:83457 281 CHEBI:75062 Warning: The "retention time" column at position 2 in the ["MS_METABOLITE_DATA"]["Metabolites"] table, matches a standard column name, "retention_time". If this match was not in error, the column should be renamed to the standard name or a name that doesn't resemble the standard name.