Validation Log
2025-12-14 23:16:26.878674
mwtab Python Library Version: 2.0.0
Source:        https://www.metabolomicsworkbench.org/rest/study/analysis_id/AN002362/mwtab/json
Study ID:      ST001412
Analysis ID:   AN002362
File format:   json
Status: Contains Validation Issues
Number of Issues: 20

Number of Warnings: 14

Number of Value Errors: 12

Number of Consistency Errors: 0

Number of Format Errors: 5

Issue Log:
Error: An empty value or a null value was detected in ["TREATMENT"]["TREATMENT_SUMMARY"]. A legitimate value should be provided for this required key.
Error: The required property, "FLOW_GRADIENT", in ["CHROMATOGRAPHY"] is missing.
Error: The required property, "FLOW_RATE", in ["CHROMATOGRAPHY"] is missing.
Error: The required property, "COLUMN_TEMPERATURE", in ["CHROMATOGRAPHY"] is missing.
Error: The required property, "SOLVENT_A", in ["CHROMATOGRAPHY"] is missing.
Error: The required property, "SOLVENT_B", in ["CHROMATOGRAPHY"] is missing.
Warning: The "quantitated m/z value" column at position 8 in the ["MS_METABOLITE_DATA"]["Metabolites"] table, matches a standard column name, "moverz_quant". If this match was not in error, the column should be renamed to the standard name or a name that doesn't resemble the standard name.
Warning: The "SUPER_PATHWAY" column at position 2 in the ["MS_METABOLITE_DATA"]["Metabolites"] table, matches a standard column name, "pathway". If this match was not in error, the column should be renamed to the standard name or a name that doesn't resemble the standard name.
Warning: The "SUB_PATHWAY" column at position 3 in the ["MS_METABOLITE_DATA"]["Metabolites"] table, matches a standard column name, "pathway". If this match was not in error, the column should be renamed to the standard name or a name that doesn't resemble the standard name.
Warning: The "PUBCHEM" column at position 10 in the ["MS_METABOLITE_DATA"]["Metabolites"] table, matches a standard column name, "pubchem_id". If this match was not in error, the column should be renamed to the standard name or a name that doesn't resemble the standard name.
Warning: The "KEGG" column at position 12 in the ["MS_METABOLITE_DATA"]["Metabolites"] table, matches a standard column name, "kegg_id". If this match was not in error, the column should be renamed to the standard name or a name that doesn't resemble the standard name.
Warning: The "CHEMSPIDER" column at position 11 in the ["MS_METABOLITE_DATA"]["Metabolites"] table, matches a standard column name, "chemspider_id". If this match was not in error, the column should be renamed to the standard name or a name that doesn't resemble the standard name.
Warning: The "CAS" column at position 9 in the ["MS_METABOLITE_DATA"]["Metabolites"] table, matches a standard column name, "cas_number". If this match was not in error, the column should be renamed to the standard name or a name that doesn't resemble the standard name.
Warning: The "CAS" column at position 9 in the ["MS_METABOLITE_DATA"]["Metabolites"] table, matches a standard column name, "cas_number", and some of the values in the column do not match the expected type or format for that column. The non-matching values are:
56               542-32-5;1118-90-7
105          10569-72-9;214139-20-5
140            1460-34-0;51829-07-3
159           10066-90-7;32113-41-0
167                463-003;463-00-3
241    305-72-6;328-50-7;22202-68-2
242              59-02-9;10191-41-0
271                56-41-7;107-95-9
282           55482-27-4;55482-27-4
308               474-24-9;474-25-9
332                 52-90-4;56-89-3
377            10-2005-9;10417-94-4
403             146-14-5;84366-81-4
463               475-31-0;863-57-0
548          141-82-2;26522-22-85-0
579             5657-19-2;5657-19-2
588               997-55-7;997-55-7
622          58725-46-5;474943-14-1
661                11-58-0;111-58-0
686            1002-84-2;10002-84-2
823                69-93-2;120K5305
838                          59-007
Warning: The "COMP_ID" column at position 4 in the ["MS_METABOLITE_DATA"]["Metabolites"] table, matches a standard column name, "other_id". If this match was not in error, the column should be renamed to the standard name or a name that doesn't resemble the standard name.
Warning: The "CHEMICAL_ID" column at position 6 in the ["MS_METABOLITE_DATA"]["Metabolites"] table, matches a standard column name, "other_id". If this match was not in error, the column should be renamed to the standard name or a name that doesn't resemble the standard name.
Warning: The "retention index" column at position 7 in the ["MS_METABOLITE_DATA"]["Metabolites"] table, matches a standard column name, "retention_index". If this match was not in error, the column should be renamed to the standard name or a name that doesn't resemble the standard name.
Warning: The column "COMP_ID" was found in the ["MS_METABOLITE_DATA"]["Metabolites"] table, but this column implies that another column, "other_id_type", should also exist, and that column was not found.
Warning: The column "retention index" was found in the ["MS_METABOLITE_DATA"]["Metabolites"] table, but this column implies that another column, "retention_index_type", should also exist, and that column was not found.
Warning: The standard column, "other_id", was found in the METABOLITES table as "COMP_ID". If this column contains database IDs for standard databases such as KEGG, PubChem, HMDB, etc., it is recommended to make individual columns for these and not lump them together into a less descriptive "other_id" column.