Validation Log 2025-12-15 00:02:37.500347 mwtab Python Library Version: 2.0.0 Source: https://www.metabolomicsworkbench.org/rest/study/analysis_id/AN003234/mwtab/txt Study ID: ST001983 Analysis ID: AN003234 File format: txt Status: Contains Validation Issues Number of Issues: 18 Number of Warnings: 11 Number of Value Errors: 10 Number of Consistency Errors: 2 Number of Format Errors: 5 Issue Log: Error: The required property, "FLOW_GRADIENT", in the "CHROMATOGRAPHY" section is missing. Error: The required property, "FLOW_RATE", in the "CHROMATOGRAPHY" section is missing. Error: The required property, "COLUMN_TEMPERATURE", in the "CHROMATOGRAPHY" section is missing. Error: The required property, "SOLVENT_A", in the "CHROMATOGRAPHY" section is missing. Error: The required property, "SOLVENT_B", in the "CHROMATOGRAPHY" section is missing. Error: The following metabolites in the, MS_METABOLITE_DATA table were not found in the METABOLITES table: "1_2-dilinoleoyl-GPC (18:2/18:2)" "1_2-dioleoyl-GPC (18:1/18:1)" "1_2-dioleoyl-GPE (18:1/18:1)" "1_2-dioleoyl-GPG (18:1/18:1)" "1_2-dioleoyl-GPI (18:1/18:1)" "1_2-dioleoyl-GPS (18:1/18:1)" "1_2-dipalmitoleoyl-GPC (16:1/16:1)*" "1_2-dipalmitoleoyl-GPE (16:1/16:1)*" "1_2-dipalmitoyl-GPC (16:0/16:0)" "1_2-dipalmitoyl-GPE (16:0/16:0)*" "1_2-dipalmitoyl-GPG (16:0/16:0)" "2^-deoxyadenosine 5^-diphosphate" "2^-deoxyadenosine 5^-monophosphate" "2^-deoxycytidine" "2^-deoxycytidine 5^-monophosphate" "2^-deoxyguanosine" "2^-deoxyinosine" "2^-deoxyuridine" "2^-O-methylcytidine" "3^-dephosphocoenzyme A" "5_6-dihydrothymine" "adenosine 2^-monophosphate (2^-AMP)" "adenosine 3^_5^-cyclic monophosphate (cAMP)" "adenosine 3^-monophosphate (3^-AMP)" "adenosine 5^-diphosphate (ADP)" "adenosine 5^-diphosphoribose (ADP-ribose)" "adenosine 5^-monophosphate (AMP)" "bilirubin (Z_Z)" "ceramide (d16:1/24:1_ d18:1/22:1)*" "ceramide (d18:1/20:0_ d16:1/22:0_ d20:1/18:0)*" "ceramide (d18:2/24:1_ d18:1/24:2)*" "cytidine 5^-diphosphocholine" "cytidine-5^-diphosphoethanolamine" "cytidine 5^-monophosphate (5^-CMP)" "cytidine 5^-monophospho-N-acetylneuraminic acid" "diacylglycerol (12:0/18:1_ 14:0/16:1_ 16:0/14:1) [1]*" "diacylglycerol (12:0/18:1_ 14:0/16:1_ 16:0/14:1) [2]*" "diacylglycerol (14:0/18:1_ 16:0/16:1) [1]*" "diacylglycerol (14:0/18:1_ 16:0/16:1) [2]*" "diacylglycerol (16:1/18:2 [2]_ 16:0/18:3 [1])*" "glutamate_ gamma-methyl ester" "glutathione_ oxidized (GSSG)" "glutathione_ reduced (GSH)" "glycosyl ceramide (d16:1/24:1_ d18:1/22:1)*" "glycosyl ceramide (d18:1/20:0_ d16:1/22:0)*" "glycosyl ceramide (d18:1/23:1_ d17:1/24:1)*" "guanosine 3^-monophosphate (3^-GMP)" "guanosine 5^- diphosphate (GDP)" "guanosine 5^-diphospho-fucose" "guanosine 5^- monophosphate (5^-GMP)" "inosine 5^-monophosphate (IMP)" "Isobar: fructose 1_6-diphosphate_ glucose 1_6-diphosphate_ myo-inositol 1_4 or 1_3-diphosphate" "N1_N12-diacetylspermine" "N2_N2-dimethylguanosine" "N6_N6-dimethyladenosine" "N6_N6_N6-trimethyllysine" "orotidine 5^-phosphate" "sphingomyelin (d17:2/16:0_ d18:2/15:0)*" "sphingomyelin (d18:0/18:0_ d19:0/17:0)*" "sphingomyelin (d18:0/20:0_ d16:0/22:0)*" "sphingomyelin (d18:1/14:0_ d16:1/16:0)*" "sphingomyelin (d18:1/15:0_ d16:1/17:0)*" "sphingomyelin (d18:1/17:0_ d17:1/18:0_ d19:1/16:0)" "sphingomyelin (d18:1/18:1_ d18:2/18:0)" "sphingomyelin (d18:1/19:0_ d19:1/18:0)*" "sphingomyelin (d18:1/20:0_ d16:1/22:0)*" "sphingomyelin (d18:1/20:1_ d18:2/20:0)*" "sphingomyelin (d18:1/21:0_ d17:1/22:0_ d16:1/23:0)*" "sphingomyelin (d18:1/22:1_ d18:2/22:0_ d16:1/24:1)*" "sphingomyelin (d18:1/22:2_ d18:2/22:1_ d16:1/24:2)*" "sphingomyelin (d18:1/24:1_ d18:2/24:0)*" "sphingomyelin (d18:1/25:0_ d19:0/24:1_ d20:1/23:0_ d19:1/24:0)*" "sphingomyelin (d18:2/14:0_ d18:1/14:1)*" "sphingomyelin (d18:2/16:0_ d18:1/16:1)*" "sphingomyelin (d18:2/23:0_ d18:1/23:1_ d17:1/24:1)*" "sphingomyelin (d18:2/24:1_ d18:1/24:2)*" "thymidine 5^-monophosphate" "trigonelline (N^-methylnicotinate)" "uridine 3^-monophosphate (3^-UMP)" "uridine 5^-diphosphate (UDP)" "uridine 5^-monophosphate (UMP)" "uridine 5^-triphosphate (UTP)" "xanthosine 5^-monophosphate (xmp)" Error: The following metabolites in the METABOLITES table were not found in the MS_METABOLITE_DATA table: "1,2-dilinoleoyl-GPC (18:2/18:2)" "1,2-dioleoyl-GPC (18:1/18:1)" "1,2-dioleoyl-GPE (18:1/18:1)" "1,2-dioleoyl-GPG (18:1/18:1)" "1,2-dioleoyl-GPI (18:1/18:1)" "1,2-dioleoyl-GPS (18:1/18:1)" "1,2-dipalmitoleoyl-GPC (16:1/16:1)*" "1,2-dipalmitoleoyl-GPE (16:1/16:1)*" "1,2-dipalmitoyl-GPC (16:0/16:0)" "1,2-dipalmitoyl-GPE (16:0/16:0)*" "1,2-dipalmitoyl-GPG (16:0/16:0)" "2'-deoxyadenosine 5'-diphosphate" "2'-deoxyadenosine 5'-monophosphate" "2'-deoxycytidine" "2'-deoxycytidine 5'-monophosphate" "2'-deoxyguanosine" "2'-deoxyinosine" "2'-deoxyuridine" "2'-O-methylcytidine" "3'-dephosphocoenzyme A" "5,6-dihydrothymine" "adenosine 2'-monophosphate (2'-AMP)" "adenosine 3',5'-cyclic monophosphate (cAMP)" "adenosine 3'-monophosphate (3'-AMP)" "adenosine 5'-diphosphate (ADP)" "adenosine 5'-diphosphoribose (ADP-ribose)" "adenosine 5'-monophosphate (AMP)" "bilirubin (Z,Z)" "ceramide (d16:1/24:1, d18:1/22:1)*" "ceramide (d18:1/20:0, d16:1/22:0, d20:1/18:0)*" "ceramide (d18:2/24:1, d18:1/24:2)*" "cytidine 5'-diphosphocholine" "cytidine-5'-diphosphoethanolamine" "cytidine 5'-monophosphate (5'-CMP)" "cytidine 5'-monophospho-N-acetylneuraminic acid" "diacylglycerol (12:0/18:1, 14:0/16:1, 16:0/14:1) [1]*" "diacylglycerol (12:0/18:1, 14:0/16:1, 16:0/14:1) [2]*" "diacylglycerol (14:0/18:1, 16:0/16:1) [1]*" "diacylglycerol (14:0/18:1, 16:0/16:1) [2]*" "diacylglycerol (16:1/18:2 [2], 16:0/18:3 [1])*" "glutamate, gamma-methyl ester" "glutathione, oxidized (GSSG)" "glutathione, reduced (GSH)" "glycosyl ceramide (d16:1/24:1, d18:1/22:1)*" "glycosyl ceramide (d18:1/20:0, d16:1/22:0)*" "glycosyl ceramide (d18:1/23:1, d17:1/24:1)*" "guanosine 3'-monophosphate (3'-GMP)" "guanosine 5'- diphosphate (GDP)" "guanosine 5'-diphospho-fucose" "guanosine 5'- monophosphate (5'-GMP)" "inosine 5'-monophosphate (IMP)" "Isobar: fructose 1,6-diphosphate, glucose 1,6-diphosphate, myo-inositol 1,4 or 1,3-diphosphate" "N1,N12-diacetylspermine" "N2,N2-dimethylguanosine" "N6,N6-dimethyladenosine" "N6,N6,N6-trimethyllysine" "orotidine 5'-phosphate" "sphingomyelin (d17:2/16:0, d18:2/15:0)*" "sphingomyelin (d18:0/18:0, d19:0/17:0)*" "sphingomyelin (d18:0/20:0, d16:0/22:0)*" "sphingomyelin (d18:1/14:0, d16:1/16:0)*" "sphingomyelin (d18:1/15:0, d16:1/17:0)*" "sphingomyelin (d18:1/17:0, d17:1/18:0, d19:1/16:0)" "sphingomyelin (d18:1/18:1, d18:2/18:0)" "sphingomyelin (d18:1/19:0, d19:1/18:0)*" "sphingomyelin (d18:1/20:0, d16:1/22:0)*" "sphingomyelin (d18:1/20:1, d18:2/20:0)*" "sphingomyelin (d18:1/21:0, d17:1/22:0, d16:1/23:0)*" "sphingomyelin (d18:1/22:1, d18:2/22:0, d16:1/24:1)*" "sphingomyelin (d18:1/22:2, d18:2/22:1, d16:1/24:2)*" "sphingomyelin (d18:1/24:1, d18:2/24:0)*" "sphingomyelin (d18:1/25:0, d19:0/24:1, d20:1/23:0, d19:1/24:0)*" "sphingomyelin (d18:2/14:0, d18:1/14:1)*" "sphingomyelin (d18:2/16:0, d18:1/16:1)*" "sphingomyelin (d18:2/23:0, d18:1/23:1, d17:1/24:1)*" "sphingomyelin (d18:2/24:1, d18:1/24:2)*" "thymidine 5'-monophosphate" "trigonelline (N'-methylnicotinate)" "uridine 3'-monophosphate (3'-UMP)" "uridine 5'-diphosphate (UDP)" "uridine 5'-monophosphate (UMP)" "uridine 5'-triphosphate (UTP)" "xanthosine 5'-monophosphate (xmp)" Warning: The "ri" column at position 7 in the METABOLITES table, matches a standard column name, "retention_index". If this match was not in error, the column should be renamed to the standard name or a name that doesn't resemble the standard name. Warning: The "ri_type" column at position 8 in the METABOLITES table, matches a standard column name, "retention_index_type". If this match was not in error, the column should be renamed to the standard name or a name that doesn't resemble the standard name. Warning: The standard column, "other_id", was found in the METABOLITES table as "other_id". If this column contains database IDs for standard databases such as KEGG, PubChem, HMDB, etc., it is recommended to make individual columns for these and not lump them together into a less descriptive "other_id" column. Warning: The "pubchem_id" column at position 2 in the METABOLITES table has all null values. Warning: The "inchi_key" column at position 3 in the METABOLITES table has all null values. Warning: The "kegg_id" column at position 4 in the METABOLITES table has all null values. Warning: The "other_id" column at position 5 in the METABOLITES table has all null values. Warning: The "other_id_type" column at position 6 in the METABOLITES table has all null values. Warning: The "ri" column at position 7 in the METABOLITES table has all null values. Warning: The "ri_type" column at position 8 in the METABOLITES table has all null values. Warning: The "moverz_quant" column at position 9 in the METABOLITES table has all null values.