Validation Log 2025-12-15 00:53:55.736062 mwtab Python Library Version: 2.0.0 Source: https://www.metabolomicsworkbench.org/rest/study/analysis_id/AN004086/mwtab/json Study ID: ST002493 Analysis ID: AN004086 File format: json Status: Contains Validation Issues Number of Issues: 16 Number of Warnings: 12 Number of Value Errors: 12 Number of Consistency Errors: 2 Number of Format Errors: 0 Issue Log: Error: The value, "40C", in ["CHROMATOGRAPHY"]["COLUMN_TEMPERATURE"] should be a number or range (ex. "5-6") followed by a space with a unit (ex. "5 V") from the following list: ['°C', 'C']. Ignore this when more complicated descriptions are required. Error: The following metabolites in the, ["MS_METABOLITE_DATA"]["Data"] table were not found in the ["MS_METABOLITE_DATA"]["Metabolites"] table: "1_3_4_6-Tetra-O-acetyl-.beta.-D-mannopyranose" "1_3-Benzenediol_ 5-methyl-4-[(1R_6R)-3-methyl-6-(1-methylethenyl)-2-cyclohexen-1-yl]-" "1_4-Cyclohexanedione" "1_5-Pentanediamine" "1_6-Anhydro-2_3-O-isopropylidene-.beta.-D-mannopyranose" "1-.beta.-D-Arabinofuranosyluracil 5^-monophosphate" "1_D3-Histamine_ N-methyl- iSTD" "1H-Imidazole_ 1-[2-(4-methoxyphenyl)-2-[3-(4-methoxyphenyl)propoxy]ethyl]-" "2_4-Thiazolidinedione_ 5-[[4-[2-(2-thienyl)ethoxy]phenyl]methylene]-" "2_6-Diaminopimelic acid" "2_6-Di-tert-butyl-4-hydroxymethylphenol" "2-Amino-2-methyl-1_3-propanediol" "2^-Deoxyadenosine" "2^-Deoxycytidine 5^-monophosphate" "2^-Deoxyguanosine" "2^-O-Methyladenosine" "2^-O-Methylguanosine" "(2-oxo-2_3-dihydro-1H-indol-3-yl)acetic acid" "3_4-Dihydroxyphenylacetic acid" "3_4-Dihydroxyphenylalanine (DOPA)" "(3_4-Dihydroxyphenyl)ethanol" "3_4-Dimethylmethcathinone" "3_7_4^-Trihydroxyflavone" "3_7-Dihydroxy-3^_4^-dimethoxyflavone" "3.alpha._4.beta._3.alpha.-Galactotetraose" "3.alpha._4.beta.-Galactotriose" "3-Cyclopentene-1-octanoic acid_ 2-(3-hydroxy-1-penten-1-yl)-5-oxo-" "3-Furancarboxylic acid_ tetrahydro-4-methylene-2-octyl-5-oxo-_ (2R_3S)-rel-" "3^-Galactosyllactose" "3-Hydroxy-6_3^_4^-trimethoxyflavone" "(3R)-4_4-Dimethyl-2-oxotetrahydro-3-furanyl beta-D-glucopyranoside" "4_4-Dimethyl-L-glutamic acid" "4^_7-Dimethoxy-3-hydroxyflavone" "4^-Methoxypelargonidin" "5_3^-Dihydroxy-6_7_4^-trimethoxyflavone" "5-Androstene-3.beta._17.beta.-diol" "5^-S-Methyl-5^-thioadenosine" "6-[5_7-dihydroxy-2-(4-hydroxy-3-methoxyphenyl)-4-oxochromen-3-yl]oxy-3_4_5-trihydroxyoxane-2-carboxylic acid" "6^^-O-Malonylgenistin" "9-Oxo-10E_12Z_15Z-octadecatrienoic acid" "9-Oxo-10E_12Z-octadecadienoic acid" "Adenosine 5^-monophosphate" ".alpha._.beta.-Trehalose" "Cytidine-5^-monophosphate" "L-Glutamic acid_ dimethyl ester" "Monolinolenin (9c_12c_15c)" "N2_N2-Dimethylguanosine" "N_N-Dimethylarginine" "Propanoic acid_ 2-(1H-benzimidazol-2-ylthio)-_ 2-[(5-bromo-2-hydroxyphenyl)methylene]hydrazide" "Quercetin-3_7_3^_4^-tetramethyl ether" "trans-3_5-Dimethoxy-4-hydroxycinnamaldehyde" "Uridine 5^-monophosphate" Error: The following metabolites in the ["MS_METABOLITE_DATA"]["Metabolites"] table were not found in the ["MS_METABOLITE_DATA"]["Data"] table: "1,3,4,6-Tetra-O-acetyl-.beta.-D-mannopyranose" "1,3-Benzenediol, 5-methyl-4-[(1R,6R)-3-methyl-6-(1-methylethenyl)-2-cyclohexen-1-yl]-" "1,4-Cyclohexanedione" "1,5-Pentanediamine" "1,6-Anhydro-2,3-O-isopropylidene-.beta.-D-mannopyranose" "1-.beta.-D-Arabinofuranosyluracil 5'-monophosphate" "1_D3-Histamine, N-methyl- iSTD" "1H-Imidazole, 1-[2-(4-methoxyphenyl)-2-[3-(4-methoxyphenyl)propoxy]ethyl]-" "2,4-Thiazolidinedione, 5-[[4-[2-(2-thienyl)ethoxy]phenyl]methylene]-" "2,6-Diaminopimelic acid" "2,6-Di-tert-butyl-4-hydroxymethylphenol" "2-Amino-2-methyl-1,3-propanediol" "2'-Deoxyadenosine" "2'-Deoxycytidine 5'-monophosphate" "2'-Deoxyguanosine" "2'-O-Methyladenosine" "2'-O-Methylguanosine" "(2-oxo-2,3-dihydro-1H-indol-3-yl)acetic acid" "3,4-Dihydroxyphenylacetic acid" "3,4-Dihydroxyphenylalanine (DOPA)" "(3,4-Dihydroxyphenyl)ethanol" "3,4-Dimethylmethcathinone" "3,7,4'-Trihydroxyflavone" "3,7-Dihydroxy-3',4'-dimethoxyflavone" "3.alpha.,4.beta.,3.alpha.-Galactotetraose" "3.alpha.,4.beta.-Galactotriose" "3-Cyclopentene-1-octanoic acid, 2-(3-hydroxy-1-penten-1-yl)-5-oxo-" "3-Furancarboxylic acid, tetrahydro-4-methylene-2-octyl-5-oxo-, (2R,3S)-rel-" "3'-Galactosyllactose" "3-Hydroxy-6,3',4'-trimethoxyflavone" "(3R)-4,4-Dimethyl-2-oxotetrahydro-3-furanyl beta-D-glucopyranoside" "4,4-Dimethyl-L-glutamic acid" "4',7-Dimethoxy-3-hydroxyflavone" "4'-Methoxypelargonidin" "5,3'-Dihydroxy-6,7,4'-trimethoxyflavone" "5-Androstene-3.beta.,17.beta.-diol" "5'-S-Methyl-5'-thioadenosine" "6-[5,7-dihydroxy-2-(4-hydroxy-3-methoxyphenyl)-4-oxochromen-3-yl]oxy-3,4,5-trihydroxyoxane-2-carboxylic acid" "6''-O-Malonylgenistin" "9-Oxo-10E,12Z,15Z-octadecatrienoic acid" "9-Oxo-10E,12Z-octadecadienoic acid" "Adenosine 5'-monophosphate" ".alpha.,.beta.-Trehalose" "Cytidine-5'-monophosphate" "L-Glutamic acid, dimethyl ester" "Monolinolenin (9c,12c,15c)" "N2,N2-Dimethylguanosine" "N,N-Dimethylarginine" "Propanoic acid, 2-(1H-benzimidazol-2-ylthio)-, 2-[(5-bromo-2-hydroxyphenyl)methylene]hydrazide" "Quercetin-3,7,3',4'-tetramethyl ether" "trans-3,5-Dimethoxy-4-hydroxycinnamaldehyde" "Uridine 5'-monophosphate" Warning: The "moverz_quant" column at position 9 in the ["MS_METABOLITE_DATA"]["Metabolites"] table, matches a standard column name, "moverz_quant", and some of the values in the column do not match the expected type or format for that column. The non-matching values are: 1 ESI (+) 8 ESI (+) 9 ESI (+) 10 ESI (+) 11 ESI (+) 12 ESI (+) 13 ESI (+) 14 ESI (+) 15 ESI (+) 16 ESI (+) 17 ESI (+) 18 ESI (+) 19 ESI (+) 20 ESI (+) 21 ESI (+) 22 ESI (+) 23 ESI (+) 24 ESI (+) 25 ESI (+) 26 ESI (+) 27 ESI (+) 28 ESI (+) 29 ESI (+) 30 ESI (+) 31 ESI (+) 32 ESI (+) 33 ESI (+) 39 ESI (+) Warning: The "ri" column at position 7 in the ["MS_METABOLITE_DATA"]["Metabolites"] table, matches a standard column name, "retention_index". If this match was not in error, the column should be renamed to the standard name or a name that doesn't resemble the standard name. Warning: The "ri_type" column at position 8 in the ["MS_METABOLITE_DATA"]["Metabolites"] table, matches a standard column name, "retention_index_type". If this match was not in error, the column should be renamed to the standard name or a name that doesn't resemble the standard name. Warning: The column pair, "ri" and "ri_type", in the METABOLITES table should have data in the same rows, but at least one row has data in one column and nothing in the other. Warning: The standard column, "other_id", was found in the METABOLITES table as "other_id". If this column contains database IDs for standard databases such as KEGG, PubChem, HMDB, etc., it is recommended to make individual columns for these and not lump them together into a less descriptive "other_id" column. Error: Column(s) with no name were found in the ["MS_METABOLITE_DATA"]["Metabolites"] table. Warning: The "pubchem_id" column at position 2 in the ["MS_METABOLITE_DATA"]["Metabolites"] table has all null values. Warning: The "inchi_key" column at position 3 in the ["MS_METABOLITE_DATA"]["Metabolites"] table has all null values. Warning: The "kegg_id" column at position 4 in the ["MS_METABOLITE_DATA"]["Metabolites"] table has all null values. Warning: The "other_id" column at position 5 in the ["MS_METABOLITE_DATA"]["Metabolites"] table has all null values. Warning: The "other_id_type" column at position 6 in the ["MS_METABOLITE_DATA"]["Metabolites"] table has all null values. Warning: The "ri_type" column at position 8 in the ["MS_METABOLITE_DATA"]["Metabolites"] table has all null values. Warning: The "" column at position 10 in the ["MS_METABOLITE_DATA"]["Metabolites"] table has all null values.