Validation Log
2025-12-15 01:15:52.502049
mwtab Python Library Version: 2.0.0
Source:        https://www.metabolomicsworkbench.org/rest/study/analysis_id/AN004468/mwtab/json
Study ID:      ST002754
Analysis ID:   AN004468
File format:   json
Status: Contains Validation Issues
Number of Issues: 18

Number of Warnings: 10

Number of Value Errors: 15

Number of Consistency Errors: 2

Number of Format Errors: 0

Issue Log:
Error: An empty value or a null value was detected in ["CHROMATOGRAPHY"]["FLOW_GRADIENT"]. A legitimate value should be provided for this required key.
Error: The value, "-", in ["CHROMATOGRAPHY"]["FLOW_RATE"] should be a number or range (ex. "5-6") followed by a space with a unit (ex. "5 V") from the following list: ['mL/min', 'uL/min', 'μL/min']. Ignore this when more complicated descriptions are required.
Error: The value, "-", in ["CHROMATOGRAPHY"]["COLUMN_TEMPERATURE"] should be a number or range (ex. "5-6") followed by a space with a unit (ex. "5 V") from the following list: ['°C', 'C']. Ignore this when more complicated descriptions are required.
Error: An empty value or a null value was detected in ["CHROMATOGRAPHY"]["SOLVENT_A"]. A legitimate value should be provided for this required key.
Error: An empty value or a null value was detected in ["CHROMATOGRAPHY"]["SOLVENT_B"]. A legitimate value should be provided for this required key.
Error: The following metabolites in the, ["MS_METABOLITE_DATA"]["Data"] table were not found in the ["MS_METABOLITE_DATA"]["Metabolites"] table:
	"2^-deoxycytidine"
	"2^-O-methylcytidine"
	"5_6-dihydrothymine"
	"5-methyl-2^-deoxycytidine"
	"adenosine 5^-monophosphate (AMP)"
	"cytidine 5^-monophosphate (5^-CMP)"
	"glutathione_ oxidized (GSSG)"
	"guanosine 5^-monophosphate (5^-GMP)"
	"hydroxy-N6_N6_N6-trimethyllysine*"
	"inosine 5^-monophosphate (IMP)"
	"N2-acetyl_N6_N6-dimethyllysine"
	"N2_N2-dimethylguanosine"
	"N6_N6-dimethyllysine"
	"N6_N6_N6-trimethyllysine"
	"N_N-dimethylalanine"
	"N_N-dimethyl-pro-pro"
	"N_N_N-trimethyl-5-aminovalerate"
	"N_N_N-trimethyl-alanylproline betaine (TMAP)"
	"trans-3_4-methyleneheptanoylglycine"
	"trigonelline (N^-methylnicotinate)"
Error: The following metabolites in the ["MS_METABOLITE_DATA"]["Metabolites"] table were not found in the ["MS_METABOLITE_DATA"]["Data"] table:
	"2'-deoxycytidine"
	"2'-O-methylcytidine"
	"5,6-dihydrothymine"
	"5-methyl-2'-deoxycytidine"
	"adenosine 5'-monophosphate (AMP)"
	"cytidine 5'-monophosphate (5'-CMP)"
	"glutathione, oxidized (GSSG)"
	"guanosine 5'-monophosphate (5'-GMP)"
	"hydroxy-N6,N6,N6-trimethyllysine*"
	"inosine 5'-monophosphate (IMP)"
	"N2-acetyl,N6,N6-dimethyllysine"
	"N2,N2-dimethylguanosine"
	"N6,N6-dimethyllysine"
	"N6,N6,N6-trimethyllysine"
	"N,N-dimethylalanine"
	"N,N-dimethyl-pro-pro"
	"N,N,N-trimethyl-5-aminovalerate"
	"N,N,N-trimethyl-alanylproline betaine (TMAP)"
	"trans-3,4-methyleneheptanoylglycine"
	"trigonelline (N'-methylnicotinate)"
Warning: The "ri" column at position 7 in the ["MS_METABOLITE_DATA"]["Metabolites"] table, matches a standard column name, "retention_index". If this match was not in error, the column should be renamed to the standard name or a name that doesn't resemble the standard name.
Warning: The "ri_type" column at position 8 in the ["MS_METABOLITE_DATA"]["Metabolites"] table, matches a standard column name, "retention_index_type". If this match was not in error, the column should be renamed to the standard name or a name that doesn't resemble the standard name.
Warning: The standard column, "other_id", was found in the METABOLITES table as "other_id". If this column contains database IDs for standard databases such as KEGG, PubChem, HMDB, etc., it is recommended to make individual columns for these and not lump them together into a less descriptive "other_id" column.
Error: Column(s) with no name were found in the ["MS_METABOLITE_DATA"]["Metabolites"] table.
Warning: The "inchi_key" column at position 3 in the ["MS_METABOLITE_DATA"]["Metabolites"] table has all null values.
Warning: The "other_id" column at position 5 in the ["MS_METABOLITE_DATA"]["Metabolites"] table has all null values.
Warning: The "other_id_type" column at position 6 in the ["MS_METABOLITE_DATA"]["Metabolites"] table has all null values.
Warning: The "ri" column at position 7 in the ["MS_METABOLITE_DATA"]["Metabolites"] table has all null values.
Warning: The "ri_type" column at position 8 in the ["MS_METABOLITE_DATA"]["Metabolites"] table has all null values.
Warning: The "moverz_quant" column at position 9 in the ["MS_METABOLITE_DATA"]["Metabolites"] table has all null values.
Warning: The "" column at position 10 in the ["MS_METABOLITE_DATA"]["Metabolites"] table has all null values.