Validation Log
2025-12-15 01:15:59.263851
mwtab Python Library Version: 2.0.0
Source:        https://www.metabolomicsworkbench.org/rest/study/analysis_id/AN004470/mwtab/json
Study ID:      ST002754
Analysis ID:   AN004470
File format:   json
Status: Contains Validation Issues
Number of Issues: 18

Number of Warnings: 10

Number of Value Errors: 15

Number of Consistency Errors: 2

Number of Format Errors: 0

Issue Log:
Error: An empty value or a null value was detected in ["CHROMATOGRAPHY"]["FLOW_GRADIENT"]. A legitimate value should be provided for this required key.
Error: The value, "-", in ["CHROMATOGRAPHY"]["FLOW_RATE"] should be a number or range (ex. "5-6") followed by a space with a unit (ex. "5 V") from the following list: ['mL/min', 'uL/min', 'μL/min']. Ignore this when more complicated descriptions are required.
Error: The value, "-", in ["CHROMATOGRAPHY"]["COLUMN_TEMPERATURE"] should be a number or range (ex. "5-6") followed by a space with a unit (ex. "5 V") from the following list: ['°C', 'C']. Ignore this when more complicated descriptions are required.
Error: An empty value or a null value was detected in ["CHROMATOGRAPHY"]["SOLVENT_A"]. A legitimate value should be provided for this required key.
Error: An empty value or a null value was detected in ["CHROMATOGRAPHY"]["SOLVENT_B"]. A legitimate value should be provided for this required key.
Error: The following metabolites in the, ["MS_METABOLITE_DATA"]["Data"] table were not found in the ["MS_METABOLITE_DATA"]["Metabolites"] table:
	"12_13-DiHOME"
	"1_5-anhydroglucitol (1_5-AG)"
	"2_3-dihydroxy-5-methylthio-4-pentenoate (DMTPA)*"
	"2_3-diphosphoglycerate"
	"2_4-di-tert-butylphenol"
	"2_8-quinolinediol sulfate"
	"2^-deoxyuridine"
	"2^-O-methyluridine"
	"3-bromo-5-chloro-2_6-dihydroxybenzoic acid*"
	"5_6-dihydrouracil"
	"5_6-dihydrouridine"
	"9_10-DiHOME"
	"bilirubin degradation product_ C16H18N2O5 (2)**"
	"bilirubin degradation product_ C16H18N2O5 (3)**"
	"bilirubin degradation product_ C17H18N2O4 (1)**"
	"bilirubin degradation product_ C17H18N2O4 (2)**"
	"bilirubin degradation product_ C17H18N2O4 (3)**"
	"bilirubin degradation product_ C17H20N2O5 (1)**"
	"bilirubin degradation product_ C17H20N2O5 (2)**"
	"branched-chain_ straight-chain_ or cyclopropyl 10:1 fatty acid (1)*"
	"branched-chain_ straight-chain_ or cyclopropyl 10:1 fatty acid (2)*"
	"branched-chain_ straight-chain_ or cyclopropyl 12:1 fatty acid*"
	"cis-3_4-methyleneheptanoylglycine"
	"N2_N5-diacetylornithine"
	"N2_N6-diacetyllysine"
Error: The following metabolites in the ["MS_METABOLITE_DATA"]["Metabolites"] table were not found in the ["MS_METABOLITE_DATA"]["Data"] table:
	"12,13-DiHOME"
	"1,5-anhydroglucitol (1,5-AG)"
	"2,3-dihydroxy-5-methylthio-4-pentenoate (DMTPA)*"
	"2,3-diphosphoglycerate"
	"2,4-di-tert-butylphenol"
	"2,8-quinolinediol sulfate"
	"2'-deoxyuridine"
	"2'-O-methyluridine"
	"3-bromo-5-chloro-2,6-dihydroxybenzoic acid*"
	"5,6-dihydrouracil"
	"5,6-dihydrouridine"
	"9,10-DiHOME"
	"bilirubin degradation product, C16H18N2O5 (2)**"
	"bilirubin degradation product, C16H18N2O5 (3)**"
	"bilirubin degradation product, C17H18N2O4 (1)**"
	"bilirubin degradation product, C17H18N2O4 (2)**"
	"bilirubin degradation product, C17H18N2O4 (3)**"
	"bilirubin degradation product, C17H20N2O5 (1)**"
	"bilirubin degradation product, C17H20N2O5 (2)**"
	"branched-chain, straight-chain, or cyclopropyl 10:1 fatty acid (1)*"
	"branched-chain, straight-chain, or cyclopropyl 10:1 fatty acid (2)*"
	"branched-chain, straight-chain, or cyclopropyl 12:1 fatty acid*"
	"cis-3,4-methyleneheptanoylglycine"
	"N2,N5-diacetylornithine"
	"N2,N6-diacetyllysine"
Warning: The "ri" column at position 7 in the ["MS_METABOLITE_DATA"]["Metabolites"] table, matches a standard column name, "retention_index". If this match was not in error, the column should be renamed to the standard name or a name that doesn't resemble the standard name.
Warning: The "ri_type" column at position 8 in the ["MS_METABOLITE_DATA"]["Metabolites"] table, matches a standard column name, "retention_index_type". If this match was not in error, the column should be renamed to the standard name or a name that doesn't resemble the standard name.
Warning: The standard column, "other_id", was found in the METABOLITES table as "other_id". If this column contains database IDs for standard databases such as KEGG, PubChem, HMDB, etc., it is recommended to make individual columns for these and not lump them together into a less descriptive "other_id" column.
Error: Column(s) with no name were found in the ["MS_METABOLITE_DATA"]["Metabolites"] table.
Warning: The "inchi_key" column at position 3 in the ["MS_METABOLITE_DATA"]["Metabolites"] table has all null values.
Warning: The "other_id" column at position 5 in the ["MS_METABOLITE_DATA"]["Metabolites"] table has all null values.
Warning: The "other_id_type" column at position 6 in the ["MS_METABOLITE_DATA"]["Metabolites"] table has all null values.
Warning: The "ri" column at position 7 in the ["MS_METABOLITE_DATA"]["Metabolites"] table has all null values.
Warning: The "ri_type" column at position 8 in the ["MS_METABOLITE_DATA"]["Metabolites"] table has all null values.
Warning: The "moverz_quant" column at position 9 in the ["MS_METABOLITE_DATA"]["Metabolites"] table has all null values.
Warning: The "" column at position 10 in the ["MS_METABOLITE_DATA"]["Metabolites"] table has all null values.