Validation Log 2025-12-15 02:58:26.852814 mwtab Python Library Version: 2.0.0 Source: https://www.metabolomicsworkbench.org/rest/study/analysis_id/AN006398/mwtab/json Study ID: ST003895 Analysis ID: AN006398 File format: json Status: Contains Validation Issues Number of Issues: 13 Number of Warnings: 12 Number of Value Errors: 10 Number of Consistency Errors: 0 Number of Format Errors: 0 Issue Log: Error: The value, "40", in ["CHROMATOGRAPHY"]["COLUMN_TEMPERATURE"] should be a number or range (ex. "5-6") followed by a space with a unit (ex. "5 V") from the following list: ['°C', 'C']. Ignore this when more complicated descriptions are required. Warning: The "Molecular Weight" column at position 10 in the ["MS_METABOLITE_DATA"]["Metabolites"] table, matches a standard column name, "mass". If this match was not in error, the column should be renamed to the standard name or a name that doesn't resemble the standard name. Warning: The "KEGG pathway" column at position 6 in the ["MS_METABOLITE_DATA"]["Metabolites"] table, matches a standard column name, "pathway". If this match was not in error, the column should be renamed to the standard name or a name that doesn't resemble the standard name. Warning: The "SMPDB pathway" column at position 7 in the ["MS_METABOLITE_DATA"]["Metabolites"] table, matches a standard column name, "pathway". If this match was not in error, the column should be renamed to the standard name or a name that doesn't resemble the standard name. Warning: The "KEGG pathway" column at position 6 in the ["MS_METABOLITE_DATA"]["Metabolites"] table, matches a standard column name, "kegg_id". If this match was not in error, the column should be renamed to the standard name or a name that doesn't resemble the standard name. Warning: The "KEGG pathway" column at position 6 in the ["MS_METABOLITE_DATA"]["Metabolites"] table, matches a standard column name, "kegg_id", and some of the values in the column do not match the expected type or format for that column. The non-matching values are: 4 map02010 ABC transporters; map01230 Biosynthes... 8 map01230 Biosynthesis of amino acids; map00310... 11 map01240 Biosynthesis of cofactors; map01210 2... 12 map01040 Biosynthesis of unsaturated fatty aci... 15 map00053 Ascorbate and aldarate metabolism 17 map01040 Biosynthesis of unsaturated fatty acids 18 map00590 Arachidonic acid metabolism; map01040... 19 map02010 ABC transporters; map01230 Biosynthes... 27 map00860 Porphyrin metabolism; map04976 Bile s... 28 map00860 Porphyrin metabolism 32 map00232 Caffeine metabolism 33 map04976 Bile secretion; map00120 Primary bile... 36 map00140 Steroid hormone biosynthesis 37 map04976 Bile secretion; map00120 Primary bile... 38 map04750 Inflammatory mediator regulation of T... 41 map01210 2-Oxocarboxylic acid metabolism; map0... 44 map01230 Biosynthesis of amino acids; map00220... 47 map00140 Steroid hormone biosynthesis; map0492... 48 map00140 Steroid hormone biosynthesis; map0497... 49 map00330 Arginine and proline metabolism 53 map00140 Steroid hormone biosynthesis; map0520... 54 map00140 Steroid hormone biosynthesis; map0497... 55 map04976 Bile secretion 61 map04726 Serotonergic synapse; map05415 Diabet... 66 map04726 Serotonergic synapse; map05415 Diabet... 71 map05207 Chemical carcinogenesis 74 map00240 Pyrimidine metabolism; map00410 beta-... 79 map00591 Linoleic acid metabolism 80 map01040 Biosynthesis of unsaturated fatty acids 84 map01040 Biosynthesis of unsaturated fatty acids 88 map00340 Histidine metabolism 89 map01040 Biosynthesis of unsaturated fatty acids 98 map00053 Ascorbate and aldarate metabolism 99 map00600 Sphingolipid metabolism 100 map00330 Arginine and proline metabolism; map0... 103 map01040 Biosynthesis of unsaturated fatty aci... 105 map01200 Carbon metabolism; map00030 Pentose p... 106 map02010 ABC transporters; map00520 Amino suga... 107 map01240 Biosynthesis of cofactors; map00860 P... 110 map00310 Lysine degradation; map00071 Fatty ac... 111 map00564 Glycerophospholipid metabolism; map00... 112 map00591 Linoleic acid metabolism 115 map04976 Bile secretion; map00120 Primary bile... 127 map00340 Histidine metabolism 128 map00380 Tryptophan metabolism 136 map01240 Biosynthesis of cofactors; map01210 2... 142 map01210 2-Oxocarboxylic acid metabolism; map0... 143 map01240 Biosynthesis of cofactors; map00380 T... 145 map00051 Fructose and mannose metabolism; map0... 155 map00564 Glycerophospholipid metabolism; map05... 156 map00564 Glycerophospholipid metabolism; map05... 158 map00564 Glycerophospholipid metabolism; map05... 159 map00564 Glycerophospholipid metabolism; map05... 160 map00564 Glycerophospholipid metabolism; map05... 161 map00564 Glycerophospholipid metabolism; map05... 162 map00564 Glycerophospholipid metabolism; map05... 163 map00564 Glycerophospholipid metabolism; map05... 164 map00564 Glycerophospholipid metabolism; map05... 165 map00565 Ether lipid metabolism 167 map00564 Glycerophospholipid metabolism; map05... 173 map01200 Carbon metabolism; map00630 Glyoxylat... 175 map00270 Cysteine and methionine metabolism 180 map00592 alpha-Linolenic acid metabolism 182 map00240 Pyrimidine metabolism; map00280 Valin... 195 map00310 Lysine degradation 198 map00250 Alanine, aspartate and glutamate meta... 200 map00410 beta-Alanine metabolism 209 map00360 Phenylalanine metabolism 217 map02010 ABC transporters; map01210 2-Oxocarbo... 218 map01240 Biosynthesis of cofactors; map00240 P... 225 map00061 Fatty acid biosynthesis 228 map00590 Arachidonic acid metabolism; map00564... 229 map00590 Arachidonic acid metabolism; map00564... 230 map00590 Arachidonic acid metabolism; map00564... 231 map00590 Arachidonic acid metabolism; map00564... 232 map00590 Arachidonic acid metabolism; map00564... 233 map00590 Arachidonic acid metabolism; map00564... 234 map00590 Arachidonic acid metabolism; map00564... 236 map00590 Arachidonic acid metabolism; map00564... 237 map00590 Arachidonic acid metabolism; map00564... 239 map00590 Arachidonic acid metabolism; map00564... 240 map00590 Arachidonic acid metabolism; map00564... 241 map00590 Arachidonic acid metabolism; map00564... 242 map00590 Arachidonic acid metabolism; map00564... 243 map00590 Arachidonic acid metabolism; map00564... 244 map00590 Arachidonic acid metabolism; map00564... 245 map00590 Arachidonic acid metabolism; map00564... 247 map00590 Arachidonic acid metabolism; map00564... 248 map00590 Arachidonic acid metabolism; map00564... 249 map00590 Arachidonic acid metabolism; map00564... 250 map00590 Arachidonic acid metabolism; map00564... 251 map00590 Arachidonic acid metabolism; map00564... 252 map00590 Arachidonic acid metabolism; map00564... 261 map04974 Protein digestion and absorption 264 map00564 Glycerophospholipid metabolism; map04... 268 map00590 Arachidonic acid metabolism; map00564... 274 map00564 Glycerophospholipid metabolism; map04... 280 map02010 ABC transporters; map01210 2-Oxocarbo... 282 map02010 ABC transporters 286 map00310 Lysine degradation 291 map00140 Steroid hormone biosynthesis 292 map02010 ABC transporters; map01230 Biosynthes... 299 map00564 Glycerophospholipid metabolism; map00... 302 map00480 Glutathione metabolism 303 map00400 Phenylalanine, tyrosine and tryptopha... 305 map00600 Sphingolipid metabolism; map04071 Sph... 306 map04973 Carbohydrate digestion and absorption 307 map00600 Sphingolipid metabolism; map04071 Sph... 311 map00600 Sphingolipid metabolism; map04071 Sph... 313 map01240 Biosynthesis of cofactors; map04976 B... 314 map04080 Neuroactive ligand-receptor interacti... 315 map00600 Sphingolipid metabolism; map04071 Sph... 316 map04080 Neuroactive ligand-receptor interacti... 318 map01040 Biosynthesis of unsaturated fatty aci... 319 map00592 alpha-Linolenic acid metabolism 322 map01200 Carbon metabolism; map00350 Tyrosine ... 324 map01200 Carbon metabolism; map00350 Tyrosine ... 326 map04976 Bile secretion; map00120 Primary bile... 327 map04976 Bile secretion; map00120 Primary bile... 330 map00140 Steroid hormone biosynthesis; map0520... 337 map00232 Caffeine metabolism 338 map00053 Ascorbate and aldarate metabolism 339 map00860 Porphyrin metabolism; map02010 ABC tr... 343 map00760 Nicotinate and nicotinamide metabolism 347 map01240 Biosynthesis of cofactors; map01210 2... 349 map04976 Bile secretion; map00230 Purine metab... 350 map02010 ABC transporters; map00240 Pyrimidine... 351 map00860 Porphyrin metabolism 352 map00340 Histidine metabolism 362 map00310 Lysine degradation 370 map00982 Drug metabolism 373 map00350 Tyrosine metabolism 382 map00400 Phenylalanine, tyrosine and tryptopha... 386 map01210 2-Oxocarboxylic acid metabolism; map0... 387 map00380 Tryptophan metabolism 392 map00360 Phenylalanine metabolism 395 map00330 Arginine and proline metabolism 399 map00750 Vitamin B6 metabolism 405 map00380 Tryptophan metabolism; map04726 Serot... 406 map00590 Arachidonic acid metabolism 409 map00120 Primary bile acid biosynthesis 410 map00120 Primary bile acid biosynthesis 415 map00592 alpha-Linolenic acid metabolism 416 map00591 Linoleic acid metabolism 417 map00591 Linoleic acid metabolism 419 map00591 Linoleic acid metabolism 421 map00830 Retinol metabolism Warning: The "HMDB ID" column at position 4 in the ["MS_METABOLITE_DATA"]["Metabolites"] table, matches a standard column name, "hmdb_id". If this match was not in error, the column should be renamed to the standard name or a name that doesn't resemble the standard name. Warning: The "HMDB ID" column at position 4 in the ["MS_METABOLITE_DATA"]["Metabolites"] table, matches a standard column name, "hmdb_id", and some of the values in the column do not match the expected type or format for that column. The non-matching values are: 79 hMDB0062637 Warning: The "Compound ID" column at position 5 in the ["MS_METABOLITE_DATA"]["Metabolites"] table, matches a standard column name, "other_id". If this match was not in error, the column should be renamed to the standard name or a name that doesn't resemble the standard name. Warning: The "RT [min]" column at position 11 in the ["MS_METABOLITE_DATA"]["Metabolites"] table, matches a standard column name, "retention_time". If this match was not in error, the column should be renamed to the standard name or a name that doesn't resemble the standard name. Warning: The column "Compound ID" was found in the ["MS_METABOLITE_DATA"]["Metabolites"] table, but this column implies that another column, "other_id_type", should also exist, and that column was not found. Warning: The standard column, "other_id", was found in the METABOLITES table as "Compound ID". If this column contains database IDs for standard databases such as KEGG, PubChem, HMDB, etc., it is recommended to make individual columns for these and not lump them together into a less descriptive "other_id" column. Warning: The column, "KEGG pathway", in the ["MS_METABOLITE_DATA"]["Metabolites"] table was matched to multiple standard names, ['pathway', 'kegg_id']. This is a good indication that the values in that column should be split into the appropriate individual columns.