Datasets contained in the NIAID Data Ecosystem. A dataset is a collection of data of a particular experimental type. The NIAID Data Ecosystem is an environment to find and access and infectious and immune-mediated disease data and computational tools to speed the development of diagnostics, therapeutics, and vaccines. The NIAID Data Ecosystem Discovery Portal harvests metadata from dataset repository and harmonizes them to this schema to enable easy cross-platform dataset searching and filtering.
Datasets contained in the NIAID Data Ecosystem. A dataset is a collection of data of a particular experimental type.
Changes since previous version: Update the validation of the 'sample' property in the Dataset to match the changes to the SampleCollection Type.
Publications, datasets, or computational tools that cite the work. Examples: a publication which reuses the dataset in a secondary analysis, a dataset which extends the existing dataset, or a computational tool which relies on the dataset. For the primary publication, use the 'citation' property.
Date the work has changed: most recent date of dateModified, datePublished, and dateCreated.
Digital Object Identifier (DOI) for the work, not any associated publications.
Datasets which are related to the given dataset; often datasets involved in the same study. These linkages are created via human curation.
Datasets or computational tools which are similar to the work, based on terms in the names, descriptions, authors, measurementTechniques, infectiousAgents, healthConditions, etc.
ClinicalTrials.gov identifier associated with the dataset.
How an associated work is related to the dataset.
Topic of the work. This topic may be assigned by a human curator or through automated algorithms.
Infectious agent(s) / pathogen(s) which are the focus of the work (like SARS-CoV-2).
collection of vocabulary terms defined in ontologies
The health condition(s) /infectious disease(s) which are the focus of the work (like COVID-19, coronavirus).
Funding that supports (sponsors) the collection of this dataset through some kind of financial contribution.
Funding that supports (sponsors) the collection of this dataset through some kind of financial contribution
An organization associated with a creator or funder of a dataset
description about the funding award / grant
Unique identifier(s) for the grant(s) used to fund the Dataset
Species / host organism from which the dataset has been collected.
A downloadable form of this dataset, at a specific location, in a specific format.
Data or tool catalog where the work is published; original source of the metadata.
A technique or technology used in a dataset corresponding to the method used for measuring the corresponding variable(s) (described using variableMeasured). For example, if variableMeasured is molecule concentration, measurementTechnique could be: "mass spectrometry" or "nmr spectroscopy" or "colorimetry" or "immunofluorescence".
measurement technique used to collect the dataset
Short description that summarizes a work.
The overall rating, based on a collection of reviews or ratings, of the work. These ratings can be collected based on user reviews or through Altmetric scores of web-based citations.
Author or creator of the work. The default field for the author or creator of the work.
The primary citation or reference about the dataset. Examples: a publication which describes the creation of the dataset. The original reference by the dataset creators/maintainers that should be cited when reusing the dataset. For other references to the dataset, use 'citedBy'.
Conditions that affect the availability of, or method(s) of access to, the work. Options include open (freely available), restricted (may include restrictions such as on use), closed (requires registration to access), or embargoed (unpublished).
The creator/author of this work; equivalent to author. Please use author by default. Use creator if author/creator in a record of this work submitted elsewhere differs from the author/creator entered into the author field.
Associated materials for the dataset, including data dictionaries and data limitation descriptions.
The language of the content of the dataset.
The number of interactions with the work, such as page views or tool downloads.
A flag to signal that the work is accessible for free.
A dataset, publication, or computational tool from which this work is derived, modified, or adapted.
dataset, publication, or tool used to create the work
Indicates a broader study, project, or collection the work is part of.
Keywords or tags used to describe this work.
A license document that applies to this work, typically indicated by URL.
Original publisher of the dataset metadata (like GenBank, ImmPort, etc.).
The place(s) which are the focus of the dataset.
the type of administrative area, such as country, state, county, or city
An identifier for the location, preferably a Wikidata ID
Categorization of how the location relates to the dataset
The period of time covered within the dataset.
A time interval in ISO 8601 duration format
Categorization of how the date/temporal interval relates to the dataset
Data usage agreement, specifying the terms under which the dataset can be used. Note that this is related to but distinct from the license.
Dataset identifier or accession number, such as a digital object identifier (DOI), sequence read archive (SRA) or GenBank accession number, etc.
Website which describes the work and provides additional details.
The organization, research project, working group, or funded program on whose behalf the author/creator was working.
the samples used to generate the dataset
Text that can be used to credit person(s) and/or organization(s) associated with a published Creative Work. For example, how a user should cite the dataset.
A citation object for a resource which is cited by the dataset (ie- is a derivative of the dataset) , related to the dataset, or from which the dataset was based on (ie- is derived from).
An identifier associated with the citation such as a digital object identifier (DOI), PubMed ID (PMID), or PubMed Central ID (PMCID)
A PubMed identifier (PMID) of the referenced publication
A digital object identifier (DOI) of the referenced publication
Abbreviated journal name where the article appears
Page numbers in the journal where the article appears
Volume of the journal where the article appears
The bibliographic citation string for the article as is provided
Data or tool catalog which houses the work
A digital object identifier (DOI) of the referenced work
The bibliographic citation for the referenced work as is provided
date the metadata was harvested from the catalog
The url(s) of one or more datasets, tools, resources or other items listed in a DataCatalog or ResourceCatalog
Name of the affiliation, such as a university
Name of the parent organization. For instance, the parentOrganization of NIAID is the National Institutes of health (NIH)
What role the organization played in creating the dataset
Unique identifier of the person, like an ORCID ID
Role the person played in creating the dataset
Link to the homepage or other web content describing the person
The identifier property represents any kind of identifier for any kind of Thing, such as ISBNs, GTIN codes, UUIDs etc. Schema.org provides dedicated properties for representing many of these, either as textual strings or as URL (URI) links. See background notes for more details.
The person, organization, or catalog that curated this DefinedTerm for the metadata property
A code that identifies this DefinedTerm within a DefinedTermSet.
A DefinedTermSet that contains this term.
The original name of the item, before any metadata standardization/normalization
A boolean indicator describing whether or not this DefinedTerm was curated as the value of a property.
Reusable software or algorithm definition
name of the software, computational tool, or algorithm.
date the software, computational tool, or algorithm was run
url of the software, computational tool, or algorithm
Data or resource catalog where the sample is listed
one or more observable traits or conditions relevant to the source of the sample.
One or more genetic variants or molecular features observed or inferred from the sample.
The type of cell represented in or derived from the biological sample, based on morphology, lineage, or molecular markers.
Indicate the anatomical system from which the sample is collect, e.g. circulatory, digestive, endocrine, immune and other systems.
Indicate the organ, tissues the sample was collected from.
The biological sex of the individual from which the sample was obtained.
A temporal subdivision of a developmental process, indicating the age or stage of the object when the sample was created.
A flag to signal that the sample is available for reuse.
A numeric value for a measurement of the size of a sample. If completely unknown, set value = 0, and unitText = 'unknown'
Aggregate information about the samples in the Sample Collection formatted as a sample object.
The number of sample records in the sample collection. Min/max estimates can be used in lieu of actual number. If completely unknown, set value = 0, and unitText = 'unknown'
A numeric value and unit for a property with potentially different units
An estimated maximum numberic value if the actual value is not known. Ignore if actual numeric value is known.
An estimated minumum numeric value if the actual value is not known. Ignore if actual numeric value is known.
A unit associated with the value. E.g.- 'records' for the number of records in a database.
A commonly used identifier for the characteristic represented by the property, e.g. a manufacturer or a standard code for a property. propertyID can be (1) a prefixed string, mainly meant to be used with standards for product properties; (2) a site-specific, non-prefixed string (e.g. the primary key of the property or the vendor-specific ID of the property), or (3) a URL indicating the type of the property, either pointing to an external vocabulary, or a Web resource that describes the property (e.g. a glossary entry). Standards bodies should promote a standard prefix for the identifiers of properties from their standards.
ComputationalTools (software, workflows, computational tools, code) contained in the NIAID Data Ecosystem. The NIAID Data Ecosystem is a secure environment to find, access and analyze immune-mediated and infectious disease data and computational tools to speed the development of diagnostics, therapeutics, and vaccines. The NIAID Data Ecosystem Discovery Portal harvests metadata from dataset repository and harmonizes them to this schema to enable easy cross-platform dataset searching and filtering.
ComputationalTools (software, workflows, computational tools, code) contained in the NIAID Data Ecosystem.
Changes since previous version: Update 'citation' and 'citedBy' descriptions. Added the creditText property as optional.
Publications, datasets, or computational tools that cite the work. Examples: a publication which uses the tool on a new dataset. For the primary publication, use the 'citation' property.
Digital object identifier (DOI) for the work, not any associated publications.
A computational tool which reuses the computational tool.
Computational tools which are related to the given computational tool. These linkages are created via human curation.
Funding that supports (sponsors) the development of this computational tool through some kind of financial contribution.
Funding that supports (sponsors) the development of this computational tool through some kind of financial contribution
An organization associated with a creator or funder of a computational tool
Unique identifier(s) for the grant(s) used to fund the development of this computational tool
Device or platform required to run the application, such as Bioconda, Docker, or Singularity.
Link to the source code repository of the tool such as GitHub.
The main programming language(s) used to build or execute the tool.
software input, such as a file or parameter.
Type of software application, e.g. 'Command-line tool', 'Database portal', 'Desktop application', 'Library', 'Ontology', 'Plug-in', 'Script', 'SPARQL endpoint', 'Suite', 'Web application', 'Web API', 'Web service', 'Workbench', 'Workflow'.
A subcategory of the computational tool, like gene regulation.
The name of the application suite to which the application belongs (e.g. Excel belongs to Office).
Features or modules provided by this application (and possibly required by other applications).
Operating systems supported (Windows 7, OSX 10.6, Android 1.6).
Processor architecture required to run the application (e.g. IA64).
Additional content for a software application.
URL to access software application help.
Component dependency requirements for application. This includes runtime environments and shared libraries that are not included in the application distribution package, but required to run the application (Examples: DirectX, Java or .NET runtime).
The primary citation or reference about the computational tool. Examples: a publication which describes the development, features and/or application of the tool. The original reference by the tool developers/maintainers that should be cited when reusing the tool. For other references to the tool, use 'citedBy'.
A secondary contributor to the developement or maintenance of the computational tool.
contributor to development or maintenance
A link to a webpage containing the comments about the computational tool.
An item that is part of this computational tool.
The language of the computational tool (not programming language).
Original publisher of the computational tool metadata (like GitHub, Dockstore, etc.).
A thumbnail image of the computational tool.
A description of the computational tool.
Text that can be used to credit person(s) and/or organization(s) associated with a published Creative Work. For example, how a user should cite the tool.
Additional type of the referenced work, such as a Sample, Run, Experiment, or BioProject
Role the person played in creating the computational tool
Reusable input or output parameter definition
An ontology identifier or url of the software input our output
Description of the software input or output
File type of the software input our output
ResourceCatalogs (collections of scientific information or research outputs) contained in the NIAID Data Ecosystem. Resource catalogs include databases, repositories, knowledge bases, citation indices, software indices, browser-based data portals (web portals), etc. The NIAID Data Ecosystem is an environment to find and access and infectious and immune-mediated disease data, resources and computational tools to speed the development of diagnostics, therapeutics, and vaccines. The NIAID Data Ecosystem Discovery Portal harvests metadata from dataset repository and harmonizes them to this schema to enable easy cross-platform dataset searching and filtering.
ResourceCatalogs (collections of scientific information or research outputs) contained in the NIAID Data Ecosystem. Resource catalogs include databases, repositories, knowledge bases, citation indices, software indices, browser-based data portals (web portals), etc.
Changes since previous version: Add description for the 'about' field.
The entity type or class encapsulated by the records in this resource. For example, if a repository has a record on CDK2, and metadata about the genetic sequence, epigentic annotation, gene locus, etc-- the entity type would be Gene, and the resource contains data 'about' Genes. These should be formatted as DefinedTerm objects (mapped to ontology terms) for easier standardization.
Publications, datasets, or computational tools that cite the work. Examples: a publication which uses information or content of the resource catalog for secondary analysis, or a computational tool which relies on the content of the resource catalog. For the primary citation, use the 'citation' field.
Resources which are related to the given resource catalog. These linkages are created via human curation.
Resource catalogs which are similar to the work, based on terms in the names, descriptions, authors, measurementTechniques, infectiousAgents, healthConditions, etc.
A resource catalog which uses the resource catalog.
How an associated work is related to the resource catalog.
Funding that supports (sponsors) the creation or maintenance of the resource catalog through some kind of financial contribution.
Funding that supports (sponsors) the creation or maintenance of the resource catalog through some kind of financial contribution
An organization associated with a creator or funder of a resource catalog
Unique identifier(s) for the grant(s) used to fund the resource catalog
A downloadable form of the resource catalog, at a specific location, in a specific format.
A downloadable form of the resource catalog.
A resource catalog where the resource catalog is published.
The primary citation or reference about the resource catalog. Examples: a publication which describes the development of or improvements to the resource catalog. The original reference by the resource catalog developers/maintainers that should be cited when using the resource. For all other references to the resource catalog, use 'citedBy'.
Whether the resource is IID domain specific or generalist.
Whether the work is IID domain specific or generalist
The creator/author of this work; equivalent to author
The resource has an API through which important content may be accessed.
The resource provides downloads of its contents. Options: All content (e.g. entire data builds, tools, etc.), Partial content (just data, or just tools, etc.), Record-level (individual records, or selections of records), No downloads (information is viewable but not downloadable, users must resort to copy/paste, screenshots, etc.), Prohibited (downloading, copy/pasting, screenshotting the data is prohibited).
Associated materials for the resource catalog, including data dictionaries and data limitation descriptions
The language of the content of the resource catalog.
Original publisher of the resource catalog metadata (like GenBank, ImmPort, etc.).
The place(s) which are the focus of the resource catalog.
The period of time covered within the resource catalog.
Data usage agreement, specifying the terms under which the content from the resource catalog can be used. Note that this is related to but distinct from the license.
Resource catalog identifier or accession number, such as a digital object identifier (DOI), etc.
The number of records, datasets, tools, items, pages, etc. in the resource catalog. Min/max estimates can be used in lieu of actual number. If completely unknown, set value = 0, and unitText = 'unknown'
The type of resource/resource catalog that best describes the work.
Text that can be used to credit person(s) and/or organization(s) associated with a published Creative Work. For example, how a user should cite the resource.
A citation object for a publication which is cited by the resource catalog (ie- is a derivative of the resource catalog), related to the resource catalog, or from which the resource catalog was based on (ie- is derived from).
Data, resource or tool catalog which houses the work
Role the person played in creating the resource catalog
potential ontology-linked resource types
A word, name, acronym, phrase, etc. with a formal definition. Often used in the context of category or subject classification, glossaries or dictionaries, product or creative work types, etc. Use the name property for the term being defined, use termCode if the term has an alpha-numeric code allocated, use description to provide the definition of the term.
Changes since previous version: Replace includedInDataCatalog.dataset with includedInDataCatalog.archivedAt.
Samples contained in the NIAID Data Ecosystem. A Sample is a material entity taken from a larger source, system, or environment, collected for the purpose of analysis, testing, identification, or demonstration. The NIAID Data Ecosystem Discovery Portal harvests metadata from repositories and harmonizes them to this schema to enable easy cross-platform sample searching and filtering.
Samples contained in the NIAID Data Ecosystem. A sample is a material entity taken from a larger source.
Changes since previous version: Allow DefinedTerm as an expected type for experimentalPurpose.
Sample identifier or accession number, such as a digital object identifier (DOI), sequence read archive (SRA) or GenBank accession number, etc.
The terms under which the sample can be used. Note that this is related to but distinct from the license.
Conditions that affect the availability of, or method(s) of access to, the sample. Options include open (freely available), restricted (may include restrictions such as on use), closed (requires registration to access), or embargoed (unpublished).
A flag to signal that the sample may be requested at no cost (not including shipping).
Data or resource catalog where the sample is listed; original source of the metadata.
Publications, datasets, or computational tools that cite the sample. Examples: a dataset which reuses the sample in a secondary study.
Datasets, resources, or samples which are related to the given sample; often sample involved in the same study. These linkages are created via human curation.
related resources or samples (via curation)
Datasets, resources, or samples which are similar to the sample, based on terms in the names, descriptions, authors, measurementTechniques, infectiousAgents, healthConditions, etc.
similar resources of samples (auto-assigned)
A resource or sample which reuses the sample. For example, a sample of a cell line that was created by knocking out a gene from this cell line sample. Another example would be a sample of infected tissue that was derived from this tissue sample by infecting it with a virus.
A resource or sample from which this sample is derived, modified, or adapted. For example a sample of a cell line, which was infected by virus sample in order to create the sample.
resource or sample used to create the sample.
Associated materials that constitute the sample. For example, other samples (if sample was created by pooling samples), additives, cryoprotective agents, etc. Use 'hasPart' for samples that were generated by pooling other samples. For example, a synthetic microbiome sample may use 'hasPart' to list the individual microbial samples used to generate it.
Associated materials or samples that constitute the sample
Associated materials the sample may help constitute. For example, the pooled sample that used this sample. Use 'isPartOf' for pooled samples generated from this sample. For example, a microbial sample that was used to generate a synthetic microbiome sample.
The processing technique that was applied to the sample, methods used to prepare the samples.
Specify the condition, composition or state of the sample, for example dried, frozen, passage number.
The temperature at which the sample is stored.
A technique or technology used in the collection or processing of the sample corresponding to the method used for measuring the corresponding variable(s) (described using variableMeasured). For example, if variableMeasured is cell density or cell counts, measurementTechnique could be: "centrifugation" or "flow cytometry".
measurement technique used to collect, process, or generate the sample
Provide information about the conditions and methods of acquisition of samples.
Provide description of instruments and devices used in collecting, processing and analysis of samples.
A category or description of the habitat that describes elements of an ecosystem where the sample was collected. Where possible use controlled vocabulary such as ENVO.
Describe the planned or executed experimental procedures involving the samples.
A person or organization responsible for the collection, processing, or maintenance of the sample: Populated from collector, contributor, and maintainer.
The Person or Organization who collected the Sample.
Person or organization that contributes to the work.
The Person or Organization who is responsible for the Sample.
The location from which the sample was originally collected.
The location where the sample is stored and/or may be ordered.
The primary citation or reference to a publication, dataset, or computational tool which uses the sample. Examples: a publication which describes the creation/collection/processing of the sample. The original reference by the sample collectors/processors/maintainers that should be cited when reusing the sample. For all other references by others reusing the sample, use 'citedBy'.
Date the sample has changed: most recent date of dateModified, dateProcessed, and dateCollected.
The date on which the sample was collected.
The date the sample was processed or used in a method.
Original publisher of the sample metadata (like NCBI GEO, SRA, etc.).
The place(s) which are the focus of the sample.
The period of time covered during sampling.
Text that can be used to credit person(s) and/or organization(s) associated with a published Creative Work. For example, how a user should cite the sample.
Other Property/Value pairs that describe the sample.
Sample collections contained in the NIAID Data Ecosystem. A SampleCollection is a collection of samples with some aggregate information about the collection itself. A SampleCollection can be useful for describing sample information when only aggregated sample-level metadata is provided due to privacy issues that prevent sharing of individual sample-level metadata record.
Samples collections contained in the NIAID Data Ecosystem. A sample collection is an aggregate sample record.
Changes since previous version: Change the parent class of the SampleCollection schema to ItemList and reorganized the properties and expected values.
The list of samples that are included in the sample collection
Aggregate values derived from the samples in the collection.
Data collections contained in the NIAID Data Ecosystem. A data collection is a collection of data records from other sources that have been grouped by common search fields. The NIAID Data Ecosystem is an environment to find and access and infectious and immune-mediated disease data and resources to speed the development of diagnostics, therapeutics, and vaccines. The NIAID Data Ecosystem Discovery Portal aggregates metadata from repository of various data types and harmonizes them to this schema to enable easy cross-platform resource searching and filtering. Data collections are essentially artificial datasets that exist in the NIAID Data Ecosystem to extend the discovery of resources beyond the current scope of the data classes included in the Discovery Portal.
Data Collections contained in the NIAID Data Ecosystem. A data collection is a collection of data grouped by common search fields in the NIAID Data Ecosystem.
Changes since previous version: Updated exampleOfWork object to include 'additionalProperty'.
The entity type or class encapsulated by the records in this data collection. For example, if the records in this collection contain metadata about the genetic sequence, epigentic annotation, gene locus, etc.-- the entity type would be Gene, and the collection contains records 'about' Genes. These should be formatted as DefinedTerm objects (mapped to ontology terms) for easier standardization.
The date on which the data collection itself (not the underlying source records) was modified or when the item's entry was modified within a DataFeed.
Repository or source which contains the records that were collected for this data collection.
catalog containing the source of data for the work
URL of the source of the data collection.
The number of records data collection. Min/max estimates can be used in lieu of actual number. If completely unknown, set value = 0, and unitText = 'unknown'
Funding that supports (sponsors) the creation of the records included in the data collection through some kind of financial contribution.
Author or creator of the records from which the data collection was derived.
The primary citation or reference about the resource upon which the data collection was built. Examples: a publication which describes the source of the data collection. The original reference by the source of data collection by the creators/maintainers that should be cited when reusing the source of records included in the data collection. For other references to the source of the data collection, use 'citedBy'.
Conditions that affect the availability of, or method(s) of access to the source records included in the data collection. Options include open (freely available), restricted (may include restrictions such as on use), closed (requires registration to access), or embargoed (unpublished).
The creator/author of the data collection itself. Author and creator are generally used interchangeably (with the default being author) for most classes in the NIAID Data Ecosystem; however, for Data Collections, it is the creator of the data collection, rather than the author of the records included in the data collection.
The date on which the data collection itself (not the underlying source records) was created or when the item's entry was added to a DataFeed.
The date on which the data collection itself (not the underlying source records) was first published or when the item's entry was published within a DataFeed.
A creative work (e.g. Data record) that this work (the Data Collection) is an example/instance/realization/derivation of. For example, a Data record from which this DataCollection was derived
Metadata data about the record type included in the Data Collection.
The infectious disease(s) / health condition(s) which are the focus of the data collection.
Infectious agent(s) / pathogen(s) which are the focus of the data collection (like SARS-CoV-2).
A resource from which this data collection is derived, modified, or adapted. This can include sources of the records in the data collection if the records in the data collection were grouped by their sources.
resources used to create the data collection
A license document that applies to the source of the data collection, typically indicated by URL.
A technique, method or technology used in the source data for the data collection corresponding to the method used for measuring the corresponding variable(s) (for the records in the data collection, described using variableMeasured; for Observation, a StatisticalVariable). For example, if variableMeasured is: molecule concentration, measurementTechnique could be: "mass spectrometry" or "nmr spectroscopy" or "colorimetry" or "immunofluorescence". If the variableMeasured is "depression rating", the measurementTechnique could be "Zung Scale" or "HAM-D" or "Beck Depression Inventory".
measurement technique used to generate the records in the data collection.
The url(s) for generating the data collection on the source website, if the source has RESTful urls
The spatialCoverage of a CreativeWork indicates the place(s) which are the focus of the content. It is a subproperty of contentLocation intended primarily for more technical and detailed materials. For example with a Data collection, it indicates areas that the records in the collection describes or were grouped by: a data collection of New York weather would have spatialCoverage which was the place: the state of New York.
Species(es) / host organism from which records in the data collection have been collected, or is the focus of grouping of records in the data collection.
The period of time covered by the records grouped within the data collection.
Topic of the records in the data collection. This topic may be assigned by a human curator or through automated algorithms.
Data usage agreement for the records included in the data collection, the terms under which the underlying records in the data collection can be used. Information on how the data collection can be used. Note that this is related to but distinct from the license.
Variables measured within the records in the data collection. Measured variables by which the records in the data collection may have been grouped.
Publications or resources that cite the records in the data collection. Alternatively, publications or resources by which the records were grouped based on the citation of the records in the data collection. For the primary citation of the resource from which the data collection was created, use the 'citation' field.
Associated materials for the records in the data collection, including data dictionaries and data limitation descriptions. This can include associated materials by which the records were grouped for having the same materials in common in the data collection.
identifiers for records within the data collection.
A flag to signal that the items included in the data collection are accessible for free.
Dataset, resource/resource catalog or computational tool which incorporate the records included in this data collection. This can include resources by which the records were grouped (for having derivative resources in common) in the data collection.
Indicates a broader study, project, or collection the records in the data collection are part of. This can include broader study, project, etc. by which the records were grouped (for being a part of) in the data collection.
Dataset, resource/resource catalog or computational tool which are related to the records included in the data collection. This can include resources by which the records were grouped (for being related to) in the data collection.
Data collections which are similar to the data collection, based on terms in the names, descriptions, authors, measurementTechniques, infectiousAgents, healthConditions, etc.
The sample(s) which were used to generate the records in the data collection
Original publisher of the metadata for the records included in the data collection.
The organization, research project, working group, or funded program on whose behalf the author/creator was working when generating the records included in the data collection. This can include organizations, programs, etc. by which the records were grouped (having the same source organization) in the data collection.
The version of the source of the records included in the data collection.
A creative work (e.g. Data record) that this work (the Data Collection) is an example/instance/realization/derivation of. For example, a Data record from which this DataCollection was derived.
The Data type of a record included in this collection, use EDAM Data Ontology
data type of the records included in this collection.
The Formats in which a data record can be downloaded from the source, used EDAM Format ontology
Potential actions, processes, or operations that could be run on this data. Whenever possible, use EDAM Operations ontology
URL(s) to the schema that was used for the data records in the data collection.
Other Property/Value pairs that describe the example.
Protocols or processes that can be enacted upon a data record in the data collection. For example, the protocol or process used to generate the data collection.
Protocol or process name. In the case of the data collection protocol, the name for the data collection process should follow the format 'Process for creating the {Source} {about} Data Collection in the NIAID Data Ecosystem Discovery Portal'. For example, 'Process for creating the BV-BRC Genome Data Collection in the NIAID Data Ecosystem Discovery Portal'
Protocol or process description. For example, a description of the process used to generate the data collection.
Protocol or process description formatted as a HowTo object. For example, the description of how the Data Collection was generated formatted as a HowTo object.
A Resource Catalog in the NIAID Data Ecosystem
Link to the resource catalog in the Discovery Portal
Publications that cite the dataset, resource/resource catalog or computational tool. Examples: a publication which reuses the dataset in a secondary analysis, a dataset which extends the existing dataset, or a computational tool which relies on the dataset.
Date the dataset, resource/resource catalog or computational tool has changed: most recent date of dateModified, datePublished, and dateCreated.
Digital object identifier (DOI) for the dataset, resource/resource catalog or computational tool.
Repository or source which contains the dataset, resource/resource catalog or computational tool.
Dataset, resource/resource catalog or computational tool which incorporate this dataset, resource/resource catalog or computational tool.
Dataset, resource/resource catalog or computational tool which are related to the given dataset, resource/resource catalog or computational tool.
Dataset, resource/resource catalog or computational tool which are similar to the dataset, resource/resource catalog or computational tool, based on terms in the names, descriptions, authors, measurementTechniques, infectiousAgents, healthConditions, etc.
ClinicalTrials.gov identifier associated with the Dataset.
How an associated work is related to the dataset, resource/resource catalog.
Topic of the dataset, resource/resource catalog or computational tool. This topic may be assigned by a human curator or through automated algorithms.
The number of records, datasets, tools, items, pages, etc. in the resource/resource catalog.
The resource/resource catalog provides download access to its content. Options: All content (e.g. entire data builds, tools, etc.), Partial content (just data, or just tools, etc.), Record-level (individual records, or selections of records), No downloads (information is viewable but not downloadable, users must resort to copy/paste, screenshots, etc.), Prohibited (downloading, copy/pasting, screenshotting the data is prohibited).
The resource/resource catalog provides API access to its content.
Infectious agent(s) / pathogen(s) which are the focus of the dataset, resource/resource catalog or computational tool (e.g. SARS-CoV-2).
The infectious disease(s) / health condition(s) which are the focus of the dataset, resource/resource catalog or computational tool (e.g. COVID-19, coronavirus).
Funding that supports (sponsors) the collection of a dataset, resource/resource catalog or computational tool through some kind of financial contribution.
A downloadable form of the dataset, resource/resource catalog, at a specific location, in a specific format.
Species(es) from which dataset has been collected, or is the focus of a resource/resource catalog, or for which the tool was designed or applied.
A technique, method or technology used in an Observation, StatisticalVariable or Dataset (or DataDownload, DataCatalog), corresponding to the method used for measuring the corresponding variable(s) (for datasets, described using variableMeasured; for Observation, a StatisticalVariable). For example, if variableMeasured is: molecule concentration, measurementTechnique could be: "mass spectrometry" or "nmr spectroscopy" or "colorimetry" or "immunofluorescence". If the variableMeasured is "depression rating", the measurementTechnique could be "Zung Scale" or "HAM-D" or "Beck Depression Inventory".
The variableMeasured property can indicate (repeated as necessary) the variables that are measured in some dataset, either described as text or as pairs of identifier and description using PropertyValue, or more explicitly as a StatisticalVariable.
The curator who generated the metadata annotation.
The original name or term that was provided in the metadata.
A boolean indicating whether or not a Defined Term was curated by an annotator (true) or programmatically generated (false).
The url of a dataset, tool, resource or other item listed in a DataCatalog or ResourceCatalog.
The sample(s) which were used to generate the dataset or sample collection
Other properties listed in the item metadata record.