UU-H2O1 612.051 CU-H2O1 611.067 UU 630.061 CU 629.077 AU-H2O1 635.078 GU-H2O1 651.073 AU 653.088 GU 669.083 cysteine adduct 151.994 UUU-H2O1 918.076 CUU-H2O1 917.092 UUU 936.086 CCU-H2O1 916.108 CUU 935.102 CCU 934.118 AUU-H2O1 941.103 GUU-H2O1 957.098 ACU-H2O1 940.119 CGU-H2O1 956.114 AUU 959.114 GUU 975.109 ACU 958.13 CGU 974.125 AAU-H2O1 964.13 AGU-H2O1 980.125 GGU-H2O1 996.12 AAU 982.141 AGU 998.136 GGU 1014.13 Acetylation 42.010565 Amidation -0.984016 Biotinylation 226.077598 Iodoacetamide derivative 57.021464 Carbamylation 43.005814 Iodoacetic acid derivative 58.005479 Deamidation 0.984016 Gygi ICAT(TM) d0 486.251206 Gygi ICAT(TM) d8 494.30142 Homoserine -29.992806 Homoserine lactone -48.003371 Applied Biosystems original ICAT(TM) d8 450.275205 Applied Biosystems original ICAT(TM) d0 442.224991 N-isopropylcarboxamidomethyl 99.068414 Biotinyl-iodoacetamidyl-3,6-dioxaoctanediamine 414.193691 Phosphorylation 79.966331 S-methyl amino phosphinate 108.975121 Dehydration -18.010565 Acrylamide adduct 71.037114 pyridylacetyl 119.037114 S-carbamoylmethylcysteine cyclization (N-terminus) 39.994915 Pyro-glu from E -18.010565 Pyro-glu from Q -17.026549 N-Succinimidyl-2-morpholine acetate 127.063329 Sodium adduct 21.981943 S-pyridylethylation 105.057849 Methylation 14.01565 Oxidation or Hydroxylation 15.994915 di-Methylation 28.0313 tri-Methylation 42.04695 Beta-methylthiolation 45.987721 O-Sulfonation 79.956815 Hexose 162.052824 Lipoyl 188.032956 N-Acetylhexosamine 203.079373 Farnesylation 204.187801 Myristoylation 210.198366 Pyridoxal phosphate 229.014009 Palmitoylation 238.229666 Geranyl-geranyl 272.250401 Phosphopantetheine 340.085794 Flavin adenine dinucleotide 783.141486 N-acyl diglyceride cysteine 788.725777 Guanidination 42.021798 4-hydroxynonenal (HNE) 156.11503 hexuronic acid 176.032088 glutathione disulfide 305.068156 Acetate labeling reagent (N-term & K) (heavy form, +3amu) 45.029395 Propionate labeling reagent light form (N-term & K) 56.026215 Propionate labeling reagent heavy form (+3amu), N-term & K 59.036279 Quaternary amine labeling reagent light form (N-term & K) 127.099714 Quaternary amine labeling reagent heavy (+3amu) form, N-term & K 130.118544 Quaternary amine labeling reagent heavy form (+6amu), N-term & K 133.137375 Quaternary amine labeling reagent heavy form (+9amu), N-term & K 136.156205 Succinic anhydride labeling reagent light form (N-term & K) 100.016044 Succinic anhydride labeling reagent, heavy form (+4amu, 4H2), N-term & K 104.041151 Succinic anhydride labeling reagent, heavy form (+4amu, 4C13), N-term & K 104.029463 oxidized proline biotinylated with biotin hydrazide 258.115047 proline oxidation to pyroglutamic acid 13.979265 tryptophan oxidation to hydroxykynurenin 19.989829 Propionaldehyde +40 40.0313 Acetaldehyde +28 28.0313 Dehydroalanine (from Cysteine) -33.987721 Arginine oxidation to glutamic semialdehyde -43.053433 cysteine oxidation to cysteic acid 47.984744 Iminobiotinylation 225.093583 ESP-Tag light d0 338.177647 ESP-Tag heavy d10 348.240414 NHS-LC-Biotin 339.161662 EDT-maleimide-PEO-biotin 601.206246 IMID d0 68.037448 IMID d4 72.062555 oxidized Lysine biotinylated with biotin hydrazide 241.088497 Acrylamide d3 74.055944 Oxidation to nitro 44.985078 Applied Biosystems cleavable ICAT(TM) light 227.126991 Acetaldehyde +26 26.01565 tryptophan oxidation to kynurenin 3.994915 Lysine oxidation to aminoadipic semialdehyde -1.031634 Applied Biosystems cleavable ICAT(TM) heavy 236.157185 Addition of N-formyl met 159.035399 N-ethylmaleimide on cysteines 125.047679 Oxidized lysine biotinylated with biotin-LC-hydrazide, reduced 354.172562 Thio Ether Formation - BTP Adduct 316.138088 Oxidized lysine biotinylated with biotin-LC-hydrazide 352.156911 Oxidized proline biotinylated with biotin-LC-hydrazide, reduced 371.199111 Oxidized Proline biotinylated with biotin-LC-hydrazide 369.183461 Oxidized arginine biotinylated with biotin-LC-hydrazide 310.135113 Oxidized arginine biotinylated with biotin-LC-hydrazide, reduced 312.150763 EDT-iodo-PEO-biotin 490.174218 ubiquitinylation residue 114.042927 Formylation 27.994915 N-iodoacetyl, p-chlorobenzyl-12C6-glucamine 345.097915 N-iodoacetyl, p-chlorobenzyl-13C6-glucamine 351.118044 Replacement of proton by potassium 37.955882 Cleaved and reduced DSP/DTSSP crosslinker 87.998285 Intact EGS cross-linker 226.047738 fluorination 17.990578 5-Iodoacetamidofluorescein (Molecular Probe, Eugene, OR) 387.074287 Iodination 125.896648 di-Iodination 251.793296 tri-Iodination 377.689944 (cis-delta 5)-tetradecaenoyl 208.182715 Proline oxidation to pyrrolidinone -30.010565 (cis,cis-delta 5, delta 8)-tetradecadienoyl 206.167065 labeling reagent light form (N-term & K) 104.026215 N-linked glycan core 1216.422863 5-dimethylaminonaphthalene-1-sulfonyl 233.051049 ISD a-series (C-Term) -46.005479 amidination of lysines or N-terminal amines with methyl acetimidate 41.026549 HexNAc1dHex1 349.137281 HexNAc2 406.158745 Hex3 486.158471 HexNAc1dHex2 495.19519 Hex1HexNAc1dHex1 511.190105 HexNAc2dHex1 552.216654 Hex1HexNAc2 568.211569 Hex1HexNAc1NeuAc1 656.227613 HexNAc2dHex2 698.274563 Hex1HexNAc2Pent1 700.253828 Hex1HexNAc2dHex1 714.269478 Hex2HexNAc2 730.264392 Hex3HexNAc1Pent1 821.280102 Hex1HexNAc2dHex1Pent1 846.311736 Hex1HexNAc2dHex2 860.327386 Hex2HexNAc2Pent1 862.306651 Hex2HexNAc2dHex1 876.322301 Hex3HexNAc2 892.317216 Hex HexNAc NeuAc(2) ---OR--- Hex HexNAc(3) HexA 947.323029 Hex(3) HexNAc(2) Phos 972.283547 Selenium replaces sulfur 47.944449 Shimadzu NBS-13C 159.008578 monomethylation 18.037835 dimethylation 36.07567 Shimadzu NBS-12C 152.988449 APTA-d0 171.149738 Michael addition of BHT quinone methide to Cysteine and Lysine 218.167065 S-Ethylcystine from Serine 44.008456 phosphorylation to amine thiol 87.050655 Pyrrolidone from Proline -27.994915 13C(9) Silac label 9.030193 C13 label (Phosphotyrosine) 88.996524 13C(6) Silac label 6.020129 Hydroxyphenylglyoxal arginine 132.021129 bis(hydroxphenylglyoxal) arginine 282.052824 APTA d3 174.168569 6-aminoquinolyl-N-hydroxysuccinimidyl carbamate 170.048013 DiMethyl-CHD2 32.056407 EAPTA d0 184.157563 EAPTA d5 189.188947 EDT 75.980527 N-ethyl iodoacetamide-d5 90.084148 Acrolein addition +94 94.041865 Acrolein addition +56 56.026215 Acrolein addition +38 38.01565 Acrolein addition +76 76.0313 Acrolein addition +112 112.05243 ADP Ribose addition 541.06111 N-ethyl iodoacetamide-d0 85.052764 Representative mass and accurate mass for 116 & 117 144.102063 Crotonaldehyde 70.041865 bromination 77.910511 Tyrosine oxidation to 2-aminotyrosine 15.010899 oxidized Arginine biotinylated with biotin hydrazide 199.066699 13C(6) 15N(2) Silac label 8.014199 Thiophosphorylation 95.943487 4-sulfophenyl isothiocyanate 214.971084 Light IDBEST tag for quantitation 296.016039 nucleophilic addtion to cytopiloyne 362.136553 nucleophilic addition to cytopiloyne+H2O 380.147118 13C(6) 15N(4) Silac label 10.008269 13C(9) 15N(1) Silac label 10.027228 Trideuteration 3.01883 13C(5) 15N(1) Silac label 6.013809 phosphorylation to pyridyl thiol 121.035005 sulfonation of N-terminus 135.983029 Intact BS2-G crosslinker 96.021129 nitrosylation 28.990164 Aminoethylbenzenesulfonylation 183.035399 Ethanolation 44.026215 Dimethyl 13C(6)15N(2) Silac label 36.045499 Michael addition of hydroxymethylvinyl ketone to cysteine 86.036779 Ethylation 28.0313 Cysteine modified Coenzyme A 765.09956 Deamidation followed by a methylation 14.999666 Dimethylation of proline residue 29.039125 Deuterium Methylation of Lysine 16.028204 Light Sulfanilic Acid (SA) C12 155.004099 Heavy Sulfanilic Acid (SA) C13 161.024228 Biotin polyethyleneoxide amine 356.188212 Tryptophan oxidation to oxolactone 13.979265 Pierce EZ-Link Biotin-HPDP 428.191582 Mercury Mercaptan 201.970617 (Iodo)-uracil MP 322.020217 3-(carbamidomethylthio)propanoyl 145.019749 biotinoyl-iodoacetyl-ethylenediamine 326.141261 Fucose 146.057909 deuterated methyl ester 17.03448 Carboxylation 43.989829 Monobromobimane derivative 190.074228 Menadione quinone derivative 170.036779 Cysteine mercaptoethanol 75.998285 Fucosylated biantennary (-2 galactose) 1444.53387 dHex Hex(4) HexNAc(4) ---OR--- Hex(4) HexNAc(4) Pent Me 1606.586693 Fucosylated biantennary 1768.639517 Biantennary (-2 galactose) 1298.475961 Biantennary (-1 galactose) 1460.528784 Biantennary 1622.581608 Cysteinylation 119.004099 Loss of C-terminal K from Heavy Chain of MAb -128.094963 Nmethylmaleimide 111.032028 Cy3 CyDye DIGE Fluor saturation dye 672.298156 2,5-dimethypyrrole 78.04695 MDA adduct +62 62.01565 MDA adduct +54 54.010565 Nethylmaleimidehydrolysis 143.058243 Mono-methylated lysine labelled with Acetyl_heavy 59.045045 bis-((N-iodoacetyl)piperazinyl)sulfonerhodamine 713.093079 Cleaved and reduced DTBP crosslinker 87.01427 10-ethoxyphosphinyl-N-(biotinamidopentyl)decanamide 572.316129 thiophosphate labeled with biotin-HPDP 525.142894 6-N-biotinylaminohexyl isopropyl phosphate 447.195679 reduced 4-Hydroxynonenal 158.13068 oxidized Threonine biotinylated with biotin hydrazide 240.104482 Michael addition with methylamine 13.031634 O-Diisopropylphosphorylation 164.060231 O-Isopropylphosphorylation 122.013281 Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, heavy form 111.041593 Carbamidomethylated DTT modification of cysteine 209.018035 Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, light form 105.021464 Ornithine from Arginine -42.021798 Replacement of proton by copper 61.921774 Half of a disulfide bridge -1.007825 Diphthamide 142.110613 hydroxyfarnesyl 220.182715 diacylglycerol 576.511761 carboxyethyl 72.021129 hypusine 87.068414 retinal 266.203451 alpha-amino adipic acid 14.96328 pyruvic acid from N-term cys -33.003705 Loss of ammonia -17.026549 phycocyanobilin 586.279135 phycoerythrobilin 588.294785 phytochromobilin 584.263485 heme 616.177295 molybdopterin 521.884073 quinone 29.974179 glucosylgalactosyl hydroxylysine 340.100562 glycosylphosphatidylinositol 123.00853 phosphoribosyl dephospho-coenzyme A 881.146904 glycerylphosphorylethanolamine 197.04531 triiodo 469.716159 tetraiodo 595.612807 Dehydroalanine (from Tyrosine) -94.041865 2-amino-3-oxo-butanoic_acid -2.01565 oxoalanine -17.992806 lactic acid from N-term Ser -15.010899 diglutamyl 258.085186 AMP 329.05252 monoglutamyl 129.042593 hydroxycinnamyl 146.036779 glycosyl-L-hydroxyproline 148.037173 flavin mononucleotide 454.088965 S-diphytanylglycerol diether 634.662782 phenyl isocyanate 119.037114 d5-phenyl isocyanate 124.068498 phospho-guanosine 345.047435 hydroxymethyl 30.010565 L-selenocysteinyl molybdenum bis(molybdopterin guanine dinucleotide) 1620.930224 dipyrrolylmethanemethyl 418.137616 uridine phosphodiester 306.025302 glycerophospho 154.00311 thiocarboxylic acid 15.977156 persulfide 31.972071 N-pyruvic acid 2-iminyl 70.005479 selenyl 79.91652 molybdenum bis(molybdopterin guanine dinucleotide) 1572.985775 dihydroxy 31.989829 octanoyl 126.104465 N-acetylglucosamine-1-phosphoryl 283.045704 phosphoglycosyl-D-mannose-1-phosphoryl 242.019154 palmitoleyl 236.214016 cholesterol ester 368.344302 3,4-didehydroretinylidene 264.187801 cis-14-hydroxy-10,13-dioxo-7-heptadecenoic ester 294.183109 4-methyl-delta-1-pyrroline-5-carboxyl 109.052764 hydroxyheme 614.161645 (3-aminopropyl)(L-aspartyl-1-amino)phosphoryl-5-adenosine 386.110369 cyano 24.995249 hydrogenase diiron subcluster 342.786916 amidino 42.021798 O3-(riboflavin phosphoryl) 438.094051 S-(4a-FMN) 456.104615 copper sulfido molybdopterin cytosine dinuncleotide 922.834855 5-hydroxy-N6,N6,N6-trimethyl 59.04969 reduction -15.994915 microcin E492 siderophore ester from serine 831.197041 lipid 154.135765 triglutamyl 387.127779 tetraglutamyl 516.170373 Hexosamine 161.068808 Free monolink of DMP crosslinker 154.110613 naphthalene-2,3-dicarboxaldehyde 175.042199 4-sulfophenyl isothiocyanate (Heavy C13) 220.991213 d9-4-trimethyllammoniumbutyryl- 137.16403 4-trimethyllammoniumbutyryl- 128.107539 fluorescein-5-thiosemicarbazide 421.073241 aminoethylcysteine 59.019355 Bisphenol A diglycidyl ether derivative 340.167459 4,4,5,5-D4 Lysine 4.025107 Heptose 192.063388 Cy5 CyDye DIGE Fluor saturation dye 684.298156 Dehydropyrrolizidine alkaloid (dehydroretronecine) on cysteines 118.065674 Michael addition of t-butyl hydroxylated BHT (BHTOH) to C, H or K 234.16198 Heavy IDBEST tag for quantitation 298.022748 Nmethylmaleimidehydrolysis 129.042593 3-methyl-2-pyridyl isocyanate 134.048013 Levuglandinyl - lysine lactam adduct 332.19876 4,4\'-dianilino-1,1\'-binaphthyl-5,5\'-disulfonic acid 594.091928 Piperidination 68.0626 Diethylation, analogous to Dimethylation 56.0626 Levuglandinyl - lysine hydroxylactam adduct 348.193674 DiMethyl-C13HD2 34.063117 [3-(2,5)-Dioxopyrrolidin-1-yloxycarbonyl)-propyl]dimethyloctylammonium 227.224915 Lactosylation 324.105647 Levuglandinyl - arginine lactam adduct 290.176961 Modification of cystein by withaferin 470.266839 desthiobiotin fluorophosphonate 443.291294 CLIP_TRAQ_2 141.098318 Levuglandinyl - arginine hydroxylactam adduct 306.171876 Maleimide-Biotin 525.225719 Biot_LC_LC 452.245726 fluorescein-5-maleimide 427.069202 propyl-1,2-dideoxy-2\'-methyl-alpha-D-glucopyranoso-[2,1-d]-Delta2\'-thiazoline 232.064354 Prompt loss of side chain from oxidised Met -48.003371 Accurate mass for 114 144.105918 Accurate mass for 115 144.099599 Dibromo 155.821022 Ubiquitination 383.228103 CLIP_TRAQ_3 271.148736 CLIP_TRAQ_4 244.101452 was 15dB-biotin 626.386577 was PGA1-biotin 660.428442 Mass Defect Tag on lysine e-amino 253.010225 Nitroalkylation by Nitro Linoleic Acid 325.225309 Nitroalkylation by Nitro Oleic Acid 327.240959 Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, medium form 109.046571 Carboxymethylated DTT modification of cysteine 210.00205 Representative mass and accurate mass for 113, 114, 116 & 117 304.20536 13C(6) 15N(1) Silac label 7.017164 13C(6) 15N(2) (D)9 SILAC label 17.07069 Dehydrated 4-hydroxynonenal 138.104465 4-Oxononenal (ONE) 154.09938 O-Dimethylphosphorylation 107.997631 O-Methylphosphorylation 93.981981 O-Diethylphosphorylation 136.028931 O-Ethylphosphorylation 107.997631 O-pinacolylmethylphosphonylation 162.080967 Methylphosphonylation 77.987066 O-Isopropylmethylphosphonylation 120.034017 Accurate mass for 115, 118, 119 & 121 304.19904 Beta elimination of modified S or T followed by Michael addition of DTT 136.001656 Carboxyl modification with ethanolamine 43.042199 Sixplex Tandem Mass Tag® 229.162932 Beta elimination of alkylated Cys followed by Michael addition of DTT 120.0245 Duplex Tandem Mass Tag® 225.155833 Native Tandem Mass Tag® 224.152478 ExacTag Thiol label mass for 2-4-7-10 plex 972.365219 ExacTag Amine label mass for 2-4-7-10 plex 1046.347854 Nitroso Sulfamethoxazole Sulphenamide thiol adduct 252.044287 Dehydrated 4-Oxononenal Michael adduct 136.088815 Nitroso Sulfamethoxazole semimercaptal thiol adduct 268.039202 Nitroso Sulfamethoxazole Sulfinamide thiol adduct 267.031377 Malonylation 86.000394 derivatization by N-term modification using 3-Sulfobenzoic succinimidyl ester 183.983029 trifluoroleucine replacement of leucine 53.971735 tri nitro benzene 210.986535 Alkylation by biotinylated form of phenacyl bromide 626.263502 Beta elimination of alkylated Cys followed by Michael addition of labelled DTT 126.062161 lapachenole photochemically added to cysteine 240.11503 13C(5) Silac label 5.016774 maleimide 97.016378 Isotope Distribution Encoded Tag 214.990469 Beta elimination of modified S or T followed by Michael addition of labelled DTT 142.039317 Removal of initiator methionine from protein N-terminus -131.040485 Removal of initiator methionine from protein N-terminus, then acetylation of the new N-terminus -89.02992 Menadione hydroquinone derivative 172.05243 Iodoacetic acid derivative w/ 13C label 60.012189 D5 N-ethylmaleimide on cysteines 130.079062 Enzymatic glycine removal leaving an amidated C-terminus -58.005479 tris(2,4,6-trimethoxyphenyl)phosphonium acetic acid N-hydroxysuccinimide ester derivative 572.181134 13C6 labeled ubiquitinylation residue 120.063056 Arginine replacement by Nitropyrimidyl ornithine 80.985078 Acetyl 4,4,5,5-D4 Lysine 46.035672 Labeling transglutaminase substrate on glutamine side chain 85.089149 was PentylamineBiotin 311.166748 Dihydroxy methylglyoxal adduct 72.021129 Intact DFDNB crosslinker 163.985807 fluorescent dye that labels cysteines 682.24612 Hex1HexNAc1 365.132196 deuterium cysteamine modification to S or T 63.044462 Intact or monolink BMOE crosslinker 220.048407 was Biotin-PEO4-hydrazide 487.246455 Acetyl 13C(6) Silac label 48.030694 Acetyl_13C(6) 15N(2) Silac label 50.024764 Sumo mutant Smt3-WT tail following trypsin digestion 484.228162 S-guanylation 343.031785 S-guanylation-2 150.041585 mTRAQ light 140.094963 Adduct of phenylglyoxal with Arg 266.057909 Ubiquitination 2H4 lysine 118.068034 spermine adduct 185.189198 SILAC 4.022185 NHS ester linked Green Fluorescent Bodipy Dye 758.380841 Methylglyoxal-derived hydroimidazolone 54.010565 Glyoxal-derived hydroimiadazolone 39.994915 13C(6) 15N(2) Lysine glygly 122.057126 Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, +10 Da form 115.0667 Thiol-reactive dye for fluorescence labelling of proteins 940.1999 mTRAQ medium 144.102063 Methyl-PEO12-Maleimide 710.383719 covalent linkage of maleimidyl coumarin probe (Molecular Probes D-10253) 383.148121 SUMOylation by SUMO-2/3 599.266339 SUMOylation by SUMO-1 600.250354 2-ammonio-6-[4-(hydroxymethyl)-3-oxidopyridinium-1-yl]- hexanoate 108.021129 was ChromoBiotin 695.310118 Oxidised methionine 13C(1)2H(3) SILAC label 20.0171 Bodipy modifications onto cysteine 414.167478 Biotin polyethyleneoxid 578.317646 Methionine replacement by azido homoalanine -4.986324 SILAC 15N(4) 3.98814 pyrophosphorylation of Ser/Thr 159.932662 methionine replacement by homopropargylglycine -21.987721 2,3,4,6-tetra-O-Acetyl-1-allyl-alpha-D-galactopyranoside modification of cysteine 372.142033 Reaction with dimethylarsinous (AsIII) acid 103.960719 Gluconoylation 178.047738 Monolink of SMCC terminated with 3-(dimethylamino)-1-propylamine 321.205242 2,4-diacetamido-2,4,6-trideoxyglucopyranose 228.111007 Cys modification by (1-oxyl-2,2,5,5-tetramethyl-3-pyrroline-3-methyl)methanesulfonate (MTSL) 184.07961 4-hydroxy-2-nonenal and biotinamidohexanoic acid hydrazide, reduced 511.319226 Ethoxyformylation 72.021129 Methylmalonylation on Serine 100.016044 Cysteine modifier 820.336015 carbamidomethylated Cys that undergoes beta-elimination and Michael addition of methylamine -2.945522 Carbamidomethylated Cys that undergoes beta-elimination and Michael addition of ethylamine 11.070128 13C(4) 15N(2) Lysine glygly 120.050417 ethyl amino 27.047285 2-OH-ethyl thio-Ser 60.003371 High molecular absorption maleimide label for proteins 474.250515 Photocleavable Biotin + GalNAz on O-GlcNAc 502.202341 deamidation followed by esterification with ethanol 29.015316 SUMOylation by SUMO-2/3 (formic acid cleavage) 845.403166 SUMOylation by SUMO-1 (formic acid cleavage) 1203.577168 Chlorination of tyrosine residues 33.961028 Dichlorination 67.922055 2,4-Dinitrobenzenesulfenyl 198.981352 High molecular absorption label for proteins 458.162391 Modified GMBS X linker 267.158292 SILAC label 11.050561 Levuglandinyl-lysine anhydrolactam adduct 314.188195 Levuglandinyl-lysine pyrrole adduct 316.203845 Levuglandinyl-lysine anhyropyrrole adduct 298.19328 Condensation product of 3-deoxyglucosone 144.042259 Replacement of proton by lithium 6.008178 Replacement of 2 protons by calcium 37.946941 Replacement of 2 protons by iron 53.919289 Replacement of 2 protons by nickel 55.919696 Replacement of 2 protons by zinc 61.913495 Replacement of proton by silver 105.897267 Replacement of 2 protons by magnesium 21.969392 S-(2-succinyl) cysteine 116.010959 propargylamine 37.031634 phospho-propargylamine 116.997965 SUMOylation by SUMO-1 after tryptic cleavage 2135.920496 SUMOylation by SUMO-2/3 after tryptic cleavage 3549.536568 5-glutamyl serotonin 159.068414 Benzyl isothiocyanate 149.02992 2,3-dihydro-2,2-dimethyl-7-benzofuranol N-methyl carbamate 58.029289 Phenethyl isothiocyanate 163.04557 membrane protein extraction 159.035399 maleimide-3-saccharide 969.366232 maleimide-5-saccharide 1293.471879 Puromycin 453.212452 Condensation product of glucosone 160.037173 Dimethyl 13C(6) Silac label 34.051429 Native cysteine-reactive Tandem Mass Tag® 299.166748 cysteine-reactive Sixplex Tandem Mass Tag® 304.177202 ISD (z+2)-series -15.010899 replacement of proton with ammonium ion 17.026549 was Biotin-maleimide 449.17329 aminotyrosine with sulfation 94.967714 Azidohomoalanine (AHA) bound to propargylglycine-NH2 (alkyne) 107.077339 Azidohomoalanine (AHA) bound to DDDDK-propargylglycine-NH2 (alkyne) 695.280074 (-)-epigallocatechin-3-gallate 456.069261 (-)-dehydroepigallocatechin 287.055563 Monomethylated Arg13C(6) 15N(4) 24.023919 Dimethylated Arg13C(6) 15N(4) 38.039569 2H(3) 13C(1) monomethylated Arg13C(6) 15N(4) 28.046104 2H(6) 13C(2) Dimethylated Arg13C(6) 15N(4) 46.083939 Sec Iodoacetamide derivative 104.965913 formaldehyde adduct 12 Addition of DEDGFLYMVYASQETFG 1970.824411 Nalpha-(3-maleimidylpropionyl)biocytin 523.210069 Water-quenched monolink of DSS/BS3 crosslinker 156.078644 DMPO spin-trap nitrone adduct 111.068414 glycidamide adduct 87.032028 C-terminal homoserine lactone and two aminohexanoic acids 309.205242 Isotope-Coded Dimedone light form 138.06808 Isotope-Coded Dimedone heavy form 144.10574 Water quenched monolink of EGS cross-linker 244.058303 Water quenched monolink of DST crosslinker 132.005873 Water quenched monolink of DSP/DTSSP crosslinker 191.991486 Water quenched monolink of SMCC 237.100108 Tyrosine caged with 2-nitrobenzyl (ONB) 135.032028 Water quenched monolink of DMP crosslinker 140.094963 Cleavage product of EGS protein crosslinks by hydroylamine treatment 115.026943 N-ethylmaleimide on selenocysteines 172.992127 D5 N-ethylmaleimide on selenocysteines 178.023511 Thiadiazolydation of Cys 174.025169 desthiobiotin modification of lysine 196.121178 TAMRA fluorophosphonate modification of serine 659.312423 Maleimide-Biotin + Water 543.236284 Deoxyhypusine 71.073499 Acetyldeoxyhypusine 97.089149 Acetylhypusine 113.084064 Azidohomoalanine coupled to reductively cleaved tag 195.075625 carbamidomethylated form of reductively cleaved tag coupled to azidohomoalanine 252.097088 Sulfo-SBED Label Photoreactive Biotin Crosslinker 548.223945 Sulfo-SBED Label Photoreactive Biotin Crosslinker minus Hydrogen 546.208295 S-(2-monomethylsuccinyl) cysteine 130.026609 o-toluene 106.041865 o-toluyl-phosphorylation 170.013281 Cresyl-Saligenin-phosphorylation 276.055146 Ub Bromide probe addition 100.063663 Ubiquitin vinylmethylester 173.092617 Ub amide probe addition 196.108602 Ub Fluorescein probe addition 597.209772 S-(2-dimethylsuccinyl) cysteine 144.042259 Addition of Glycine 57.021464 addition of GGE 243.085521 13C4 Methionine label 4.013419 S-homocysteinylation 133.019749 Oxidised 13C4 labelled Methionine 20.008334 Side reaction of HisTag 1106.48935 N-Homocysteine thiolactone 117.024835 Side reaction of PG with Side chain of aspartic or glutamic acid 154.074228 Cys modified with dipy ligand 225.090212 Chemical modification of the iodinated sites of thyroglobulin by Suzuki reaction 66.010565 Chemical modification of the diiodinated sites of thyroglobulin by Suzuki reaction 132.021129 1-methyl-3-benzoyl-4-hydroxy-4-phenylpiperidine 263.131014 Side reaction of PGPG with Side chain of aspartic or glutamic acid 308.148455 Loss of arginine due to transpeptidation -156.101111 Addition of arginine due to transpeptidation 156.101111 Glycosylation with IME linked Hex(2) NeuAc 688.199683 Butyryl 70.041865 Double Carbamidomethylation 114.042927 Dimethyl-Medium 34.068961 SUMOylation leaving GlyGlyGln 242.101505 SUMOylation leaving GlnThrGlyGly 343.149184 13C3 15N1 label for SILAC 4.007099 13C3 label for SILAC 3.010064 13C4 15N1 label for SILAC 5.010454 2H(10) label 10.062767 Label:2H(4)13C(1) 5.028462 Addition of lysine due to transpeptidation 128.094963 mTRAQ heavy 148.109162 N-acetyl neuraminic acid 291.095417 N-glycoyl neuraminic acid 307.090331 Propyl 42.04695 Propyl:2H(6) 48.084611 Propiophenone 132.057515 reaction with phenyl salicylate (PS) 120.021129 Cy3 Maleimide mono-Reactive dye 753.262796 Reduced acrolein addition +58 58.041865 Reduced acrolein addition +96 96.057515 biotin hydrazide labeled acrolein addition +298 298.146347 3-methyl-5-(methylamino)-1,3-diphenylpentan-1-one 265.146664 2-ethyl-3-hydroxy-1,3-diphenylpentan-1-one 266.13068 modification of the lysine side chain from NH2 to guanidine with a H removed in favor of a benzyl group 132.068748 A fixed +1 charge tag attached to the N-terminus of peptides 162.079313 Maleimide-Biotin + 2Water 561.246849 Accurate mass for DiLeu 115 isobaric tag 145.12 Accurate mass for DiLeu 116 isobaric tag 145.132163 Accurate mass for DiLeu 117 isobaric tag 145.128307 Accurate mass for DiLeu 118 isobaric tag 145.140471 Ammonia quenched monolink of BuUrBu crosslinker 213.111341 BisANS with loss of both sulfonates 437.201774 Chemical reaction with 2,4-dinitro-1-chloro benzene (DNCB) 166.001457 N-ethylmaleimideSulfur 157.019749 SulfurDioxide 63.9619 N-ethylmaleimideSulfurWater 175.030314 Modification by hydroxylated tris-(2-chloroethyl)amine (HN-3) 131.094629 3-phosphoglyceryl 167.982375 Modification by hydroxylated mechloroethamine (HN-2) 101.084064 D5 N-ethylmaleimide+water on cysteines 148.089627 Crotonylation 68.026215 O-ethyl, N-dimethyl phosphate 135.044916 N-dimethylphosphate 107.013615 phosphate-ribosylation 212.00859 Formation of five membered aromatic heterocycle -20.026215 Biotin-PEG11-maleimide 921.461652 Native iodoacetyl Tandem Mass Tag® 324.216141 Sixplex iodoacetyl Tandem Mass Tag® 329.226595 13C(2) 15N(2) 4.00078 Phosphogluconoylation 258.014069 3-fold methylated lysine labelled with Acetyl_heavy 62.063875 Hex1dHex1 308.110732 reaction with methyl vinyl sulfone 106.00885 Oxidised 2H(3) labelled Methionine 19.013745 3-fold methylation with deuterated methyl groups 51.103441 heavy acetylation 44.017274 Hex2dHex1 470.163556 Hex3dHex1 632.216379 Hex4dHex1 794.269203 Hex5dHex1 956.322026 Hex6dHex1 1118.37485 reaction with ethyl vinyl sulfone 120.0245 reaction with phenyl vinyl sulfone 168.0245 PLP bound to lysine reduced by sodium borohydride (NaBH4) to create amine linkage 231.02966 methionine oxidation to homocysteic acid 33.969094 Conversion of carboxylic acid to hydroxamic acid 15.010899 N-ethylmaleimide on cysteine sulfenic acid 141.042593 fluorescein-hexanoate-NHS hydrolysis 471.131802 Representative mass and accurate mass for 114 217.162932 Accurate mass for DiART6plex 115 217.156612 Accurate mass for DiART6plex 116 and 119 217.168776 Accurate mass for DiART6plex 117 217.162456 Accurate mass for DiART6plex 118 217.175096 iodoacetanilide derivative 133.052764 13C labelled iodoacetanilide derivative 139.072893 Diaminopimelic acid-DSP monolinked 364.076278 N-Acetylmuramic acid 275.100502 Sumoylation by SUMO-1 after Cyanogen bromide (CNBr) cleavage 1705.73189 Label:2H(7)15N(4) 11.032077 Label:2H(6)15N(1) 7.034695 Sumoylation by SUMO-2/3 after Cyanogen bromide (CNBr) cleavage 1662.700924 Hex(5) HexNAc(4) NeuAc(2) 2204.772441 Hex(5) HexNAc(4) NeuAc 1913.677025 dHex Hex(5) HexNAc(4) NeuAc 2059.734933 dHex Hex(5) HexNAc(4) NeuAc(2) 2350.83035 O3S1HexNAc1 283.036187 H1O3P1Hex2 404.071978 3-fold methylation with fully labelled methyl groups 54.113505 Loss of ammonia (15N) -18.023584 spermidine adduct 128.131349 Biotin_PEG4 473.219571 Hex Pent(2) 426.137341 Pentose 132.042259 Hex Pent 294.095082 Hex HexA 338.084912 Hex HexNAc Phos 445.098527 Hex HexNAc Sulf 445.089011 Hex NeuAc ---OR--- HexNAc Kdn 453.14824 Hex NeuGc 469.143155 HexNAc(3) 609.238118 HexNAc NeuAc 494.174789 HexNAc NeuGc 510.169704 Hex(2) NeuAc ---OR--- Hex HexNAc Kdn 615.201064 Hex HexNAc dHex Me 525.205755 Hex HexNAc dHex Me(2) 539.221405 Ammonium-quenched monolink of DSS/BS3 crosslinker 155.094629 Hex(2) HexNAc 527.18502 Hex HexA HexNAc 541.164284 Hex(2) HexNAc Me 541.20067 Hex Pent(3) 558.1796 Hex NeuAc Pent 585.190499 Hex(2) HexNAc Sulf 607.141834 Hex2 dHex2 616.221465 dHex Hex(2) HexA 646.195644 Hex HexNAc(2) Sulf 648.168383 Hex(4) 648.211294 dHex Hex(2) HexNAc(2) Pent 1008.36456 Hex(2) HexNAc(2) NeuAc ---OR--- dHex Hex HexNAc(2) NeuGc 1021.359809 Hex(3) HexNAc(2) Pent 1024.359475 Hex(4) HexNAc(2) 1054.370039 dHex Hex(4) HexNAc Pent 1129.390834 dHex Hex(3) HexNAc(2) Pent 1170.417383 Hex(3) HexNAc(2) NeuAc 1183.412632 Hex(4) HexNAc(2) Pent 1186.412298 Hex(3) HexNAc(3) Pent 1227.438847 Hex(5) HexNAc(2) Phos 1296.389194 dHex Hex(4) HexNAc(2) Pent 1332.470207 Hex(7) HexNAc 1337.449137 Hex(4) HexNAc(2) NeuAc ---OR--- Hex(3) HexNAc(2) dHex NeuGc 1345.465456 dHex Hex(5) HexNAc(2) 1362.480772 dHex Hex(3) HexNAc(3) Pent 1373.496756 Hex(3) HexNAc(4) Sulf 1378.432776 Hex(6) HexNAc(2) 1378.475686 Hex(4) HexNAc(3) Pent 1389.491671 dHex Hex(4) HexNAc(3) 1403.507321 Hex(5) HexNAc(3) 1419.502235 Hex(3) HexNAc(4) Pent 1430.51822 Hex(6) HexNAc(2) Phos 1458.442017 dHex Hex(4) HexNAc(3) Sulf 1483.464135 dHex Hex(5) HexNAc(2) Pent 1494.52303 Hex(8) HexNAc 1499.501961 dHex Hex(3) HexNAc(3) Pent(2) 1505.539015 dHex(2) Hex(3) HexNAc(3) Pent 1519.554665 dHex Hex(3) HexNAc(4) Sulf 1524.490684 dHex Hex(6) HexNAc(2) 1524.533595 dHex Hex(4) HexNAc(3) Pent 1535.549579 Hex(4) HexNAc(4) Sulf 1540.485599 Hex(7) HexNAc(2) 1540.52851 dHex(2) Hex(4) HexNAc(3) 1549.56523 Hex(5) HexNAc(3) Pent 1551.544494 Hex(4) HexNAc(3) NeuGc 1564.539743 dHex Hex(5) HexNAc(3) 1565.560144 dHex Hex(3) HexNAc(4) Pent 1576.576129 Hex(3) HexNAc(5) Sulf 1581.512148 Hex(6) HexNAc(3) 1581.555059 Hex(3) HexNAc(4) NeuAc ---OR--- Hex(2) HexNAc(4) dHex NeuGc 1589.571378 Hex(4) HexNAc(4) Pent 1592.571043 Hex(7) HexNAc(2) Phos 1620.494841 Hex(4) HexNAc(4) Me(2) Pent 1620.602343 dHex Hex(3) HexNAc(3) Pent(3) ---OR--- Hex(4) HexNAc(2) dHex(2) NeuAc 1637.581274 dHex Hex(5) HexNAc(3) Sulf 1645.516959 dHex(2) Hex(3) HexNAc(3) Pent(2) 1651.596924 Hex(6) HexNAc(3) Phos 1661.52139 Hex(4) HexNAc(5) 1663.608157 dHex(3) Hex(3) HexNAc(3) Pent 1665.612574 dHex(2) Hex(4) HexNAc(3) Pent 1681.607488 dHex Hex(4) HexNAc(4) Sulf 1686.543508 dHex Hex(7) HexNAc(2) 1686.586419 dHex Hex(4) HexNAc(3) NeuAc ---OR--- dHex(2) Hex(3) HexNAc(3) NeuGc 1694.602737 Hex(7) HexNAc(2) Phos(2) 1700.461172 Hex(5) HexNAc(4) Sulf 1702.538423 Hex(8) HexNAc(2) 1702.581333 dHex Hex(3) HexNAc(4) Pent(2) 1708.618387 dHex Hex(4) HexNAc(3) NeuGc ---OR--- Hex(5) HexNAc(3) NeuAc 1710.597652 dHex(2) Hex(3) HexNAc(4) Pent 1722.634037 dHex Hex(3) HexNAc(5) Sulf 1727.570057 dHex Hex(6) HexNAc(3) 1727.612968 dHex Hex(3) HexNAc(4) NeuAc 1735.629286 dHex(3) Hex(3) HexNAc(4) 1736.649688 dHex Hex(4) HexNAc(4) Pent 1738.628952 Hex(4) HexNAc(5) Sulf 1743.564972 Hex(7) HexNAc(3) 1743.607882 dHex Hex(4) HexNAc(3) NeuAc Sulf 1774.559552 Hex(5) HexNAc(4) Me(2) Pent 1782.655167 Hex(3) HexNAc(6) Sulf 1784.591521 dHex Hex(6) HexNAc(3) Sulf 1807.569782 dHex Hex(4) HexNAc(5) 1809.666066 dHex Hex(5) HexA HexNAc(3) Sulf 1821.549047 Hex(7) HexNAc(3) Phos 1823.574213 Hex(6) HexNAc(4) Me(3) 1826.681382 dHex(2) Hex(4) HexNAc(4) Sulf 1832.601417 Hex(4) HexNAc(3) NeuAc(2) 1839.640245 dHex Hex(3) HexNAc(4) Pent(3) 1840.660646 dHex(2) Hex(5) HexNAc(3) Pent 1843.660312 dHex Hex(5) HexNAc(4) Sulf 1848.596331 dHex(2) Hex(3) HexNAc(4) Pent(2) 1854.676296 dHex Hex(5) HexNAc(3) NeuAc 1856.655561 Hex(3) HexNAc(6) Sulf(2) 1864.548335 Hex(9) HexNAc(2) 1864.634157 Hex(4) HexNAc(6) 1866.68753 dHex(3) Hex(3) HexNAc(4) Pent 1868.691946 dHex Hex(5) HexNAc(3) NeuGc ---OR--- Hex(6) HexNAc(3) NeuAc 1872.650475 dHex(2) Hex(4) HexNAc(4) Pent 1884.686861 dHex Hex(4) HexNAc(5) Sulf 1889.62288 dHex Hex(7) HexNAc(3) 1889.665791 dHex Hex(5) HexNAc(4) Pent 1900.681776 dHex Hex(5) HexA HexNAc(3) Sulf(2) 1901.505861 Hex(3) HexNAc(7) 1907.714079 dHex(2) Hex(5) HexNAc(4) 1914.697426 dHex(2) Hex(4) HexNAc(3) NeuAc Sulf 1920.617461 dHex Hex(5) HexNAc(4) Sulf(2) 1928.553146 dHex Hex(5) HexNAc(4) Me(2) Pent 1928.713076 Hex(5) HexNAc(4) NeuGc 1929.671939 dHex Hex(3) HexNAc(6) Sulf 1930.64943 dHex Hex(6) HexNAc(4) 1930.69234 dHex Hex(5) HexNAc(3) NeuAc Sulf 1936.612375 Hex(7) HexNAc(4) 1946.687255 dHex Hex(5) HexNAc(3) NeuGc Sulf 1952.60729 Hex(4) HexNAc(5) NeuAc 1954.703574 Hex(6) HexNAc(4) Me(3) Pent 1958.72364 dHex Hex(7) HexNAc(3) Sulf 1969.622606 dHex Hex(7) HexNAc(3) Phos 1969.632122 dHex Hex(5) HexNAc(5) 1971.718889 dHex Hex(4) HexNAc(4) NeuAc Sulf 1977.638925 dHex(3) Hex(4) HexNAc(4) Sulf 1978.659326 Hex(3) HexNAc(7) Sulf 1987.670893 Hex(6) HexNAc(5) 1987.713804 Hex(5) HexNAc(4) NeuAc Sulf 1993.633839 Hex(3) HexNAc(6) NeuAc 1995.730123 dHex(2) Hex(3) HexNAc(6) 1996.750524 Hex HexNAc NeuGc 672.222527 dHex Hex(2) HexNAc 673.242928 HexNAc(3) Sulf 689.194932 Hex(3) HexNAc 689.237843 Hex HexNAc Kdn Sulf 695.157878 HexNAc(2) NeuAc 697.254162 HexNAc Kdn(2) ---OR--- Hex(2) HexNAc HexA 703.217108 Hex(3) HexNAc Me 703.253493 Hex(2) HexA Pent Sulf 712.136808 HexNAc(2) NeuGc 713.249076 Hex(4) Phos 728.177625 Hex HexNAc NeuAc Sulf 736.184427 Hex HexA HexNAc(2) 744.243657 dHex Hex(2) HexNAc Sulf 753.199743 dHex HexNAc(3) 755.296027 dHex Hex HexNAc Kdn ---OR--- Hex(2) dHex NeuAc 761.258973 Hex HexNAc(3) 771.290941 HexNAc(2) NeuAc Sulf 777.210976 dHex(2) Hex(3) 778.274288 Hex(2) HexA HexNAc Sulf 783.173922 dHex(2) Hex(2) HexA 792.253553 dHex Hex HexNAc(2) Sulf 794.226292 dHex Hex HexNAc NeuAc 802.285522 Hex(2) HexNAc(2) Sulf 810.221207 Hex(5) 810.264117 HexNAc(4) 812.31749 HexNAc NeuGc(2) 817.260035 dHex Hex HexNAc NeuGc ---OR--- Hex(2) HexNAc NeuAc 818.280436 dHex(2) Hex(2) HexNAc 819.300837 Hex(2) HexNAc NeuGc 834.275351 dHex Hex(3) HexNAc 835.295752 dHex Hex(2) HexA HexNAc 849.275017 Hex HexNAc(3) Sulf 851.247756 Hex(4) HexNAc 851.290667 Hex HexNAc(2) NeuAc 859.306985 Hex HexNAc(2) NeuGc 875.3019 Hex(5) Phos 890.230448 dHex(2) Hex HexNAc Kdn 907.316881 dHex Hex(3) HexNAc Sulf 915.252567 dHex Hex HexNAc(3) 917.34885 dHex Hex(2) HexA HexNAc Sulf 929.231831 Hex(2) HexNAc(3) 933.343765 Hex HexNAc(2) NeuAc Sulf 939.2638 dHex(2) Hex(4) 940.327112 Ac Hex HexNAc NeuAc 698.238177 dHex(2) HexNAc(2) Kdn 948.34343 dHex Hex(2) HexNAc(2) Sulf 956.279116 dHex HexNAc(4) 958.375399 Hex HexNAc NeuAc NeuGc 963.317944 dHex Hex HexNAc(2) Kdn ---OR--- Hex(2) HexNAc dHex NeuAc 964.338345 Hex HexNAc NeuGc(2) 979.312859 Ac Hex HexNAc NeuAc(2) 989.333594 dHex(2) Hex(2) HexA HexNAc 995.332925 dHex Hex HexNAc(3) Sulf 997.305665 Hex(2) HexA NeuAc Pent Sulf 1003.232225 dHex Hex HexNAc(2) NeuAc 1005.364894 dHex Hex(3) HexA HexNAc 1011.32784 Hex(2) HexNAc(3) Sulf 1013.300579 Hex(5) HexNAc 1013.34349 HexNAc(5) 1015.396863 Ac(2) Hex HexNAc NeuAc(2) 1031.344159 Hex(2) HexNAc(2) NeuGc 1037.354723 Hex(5) Phos(3) 1050.16311 Hex(6) Phos 1052.283272 dHex Hex(2) HexA HexNAc(2) 1052.354389 dHex(2) Hex(3) HexNAc Sulf 1061.310475 Hex HexNAc(3) NeuAc 1062.386358 dHex(2) Hex HexNAc(3) 1063.406759 Hex HexNAc(3) NeuGc 1078.381273 dHex Hex HexNAc(2) NeuAc Sulf 1085.321709 dHex Hex(3) HexA HexNAc Sulf 1091.284655 dHex Hex HexA HexNAc(3) 1093.380938 Hex(2) HexNAc(2) NeuAc Sulf 1101.316623 dHex(2) Hex(2) HexNAc(2) Sulf 1102.337025 dHex(2) Hex HexNAc(2) Kdn ---OR--- Hex(2) HexNAc dHex(2) NeuAc 1110.396254 dHex Hex HexNAc(4) 1120.428223 Hex(2) HexNAc(4) 1136.423137 Hex(2) HexNAc NeuGc(2) 1141.365682 dHex(2) Hex(4) HexNAc 1143.406484 Hex HexNAc(2) NeuAc(2) 1150.402402 dHex(2) Hex HexNAc(2) NeuAc 1151.422803 dHex Hex(2) HexNAc(3) Sulf 1159.358488 dHex HexNAc(5) 1161.454772 dHex(2) Hex HexNAc(2) NeuGc ---OR--- Hex(2) HexNAc(2) dHex NeuAc ---OR--- Hex HexNAc(3) dHex Kdn 1167.417718 dHex(3) Hex(2) HexNAc(2) 1168.438119 Hex(3) HexNAc(3) Sulf 1175.353403 dHex(2) Hex(2) HexNAc(2) Sulf(2) 1182.293839 dHex Hex(2) HexNAc(2) NeuGc ---OR--- Hex(3) HexNAc(2) NeuAc 1183.412632 dHex Hex HexNAc(3) NeuAc 1208.444267 Hex(6) Phos(3) 1212.215934 dHex Hex(3) HexA HexNAc(2) 1214.407213 dHex Hex HexNAc(3) NeuGc ---OR--- Hex(2) HexNAc(3) NeuAc 1224.439181 Hex HexNAc(2) NeuAc(2) Sulf 1230.359217 dHex(2) Hex(3) HexA HexNAc Sulf 1237.342563 Hex HexNAc NeuAc(3) 1238.418446 Hex(2) HexNAc(3) NeuGc 1240.434096 dHex Hex(2) HexNAc(2) NeuAc Sulf 1247.374532 dHex(3) Hex HexNAc(2) Kdn 1256.454163 dHex(2) Hex(3) HexNAc(2) Sulf 1264.389848 dHex(2) Hex(2) HexNAc(2) Kdn 1272.449077 dHex(2) Hex(2) HexA HexNAc(2) Sulf 1278.369113 dHex Hex(2) HexNAc(4) 1282.481046 Hex HexNAc NeuGc(3) 1286.40319 dHex Hex HexNAc(3) NeuAc Sulf 1288.401081 dHex Hex(3) HexA HexNAc(2) Sulf 1294.364027 dHex Hex HexNAc(2) NeuAc(2) 1296.460311 dHex(3) HexNAc(3) Kdn 1297.480712 Hex(2) HexNAc(3) NeuAc Sulf 1304.395996 dHex(2) Hex(2) HexNAc(3) Sulf 1305.416397 dHex(2) HexNAc(5) 1307.512681 Hex(2) HexNAc(2) NeuAc(2) 1312.455225 dHex(2) Hex(2) HexNAc(2) NeuAc ---OR--- Hex HexNAc(3) dHex(2) Kdn 1313.475627 dHex Hex(3) HexNAc(3) Sulf 1321.411312 dHex(2) Hex(2) HexNAc(2) NeuGc ---OR--- Hex(3) HexNAc(2) dHex NeuAc ---OR--- Hex(2) HexNAc(3) dHex Kdn 1329.470541 Hex(2) HexNAc(5) 1339.50251 dHex Hex(3) HexNAc(2) NeuGc 1345.465456 Hex HexNAc(3) NeuAc(2) 1353.481775 dHex Hex(2) HexNAc(3) NeuAc 1370.49709 dHex(3) Hex(2) HexNAc(3) 1371.517491 Hex(7) Phos(3) 1374.268757 dHex Hex(4) HexA HexNAc(2) 1376.460036 Hex(3) HexNAc(3) NeuAc ---OR--- Hex(2) HexNAc(3) dHex NeuGc ---OR--- Hex(2) HexNAc(4) Kdn 1386.492005 dHex Hex(3) HexA(2) HexNAc(2) 1390.439301 Hex(2) HexNAc(2) NeuAc(2) Sulf 1392.41204 dHex(2) Hex(2) HexNAc(2) NeuAc Sulf 1393.432441 Hex(3) HexNAc(3) NeuGc 1402.48692 dHex(4) Hex HexNAc(2) Kdn 1402.512072 dHex(3) Hex(2) HexNAc(2) Kdn 1418.506986 dHex(3) Hex(2) HexA HexNAc(2) Sulf 1424.427021 Hex(2) HexNAc(4) NeuAc 1427.518554 dHex(2) Hex(2) HexNAc(4) 1428.538955 dHex(2) Hex(3) HexA HexNAc(2) Sulf 1440.421936 dHex(4) HexNAc(3) Kdn 1443.538621 Hex(2) HexNAc NeuGc(3) 1448.456013 dHex(4) Hex HexNAc Kdn(2) 1449.501567 dHex Hex(2) HexNAc(3) NeuAc Sulf 1450.453905 dHex Hex(2) HexNAc(2) NeuAc(2) 1458.513134 dHex(3) Hex HexNAc(3) Kdn 1459.533535 Hex(3) HexNAc(3) NeuAc Sulf 1466.44882 Hex(3) HexNAc(2) NeuAc(2) 1474.508049 Hex(3) HexNAc(3) NeuGc Sulf 1482.443734 dHex Hex(2) HexNAc(2) NeuGc(2) 1490.502964 dHex(2) Hex(3) HexNAc(2) NeuGc ---OR--- Hex(4) HexNAc(2) dHex NeuAc 1491.523365 dHex Hex(3) HexA HexNAc(3) Sulf 1497.4434 Hex(2) HexNAc(3) NeuAc(2) 1515.534598 dHex(2) Hex(2) HexNAc(3) NeuAc 1516.554999 dHex(4) Hex(2) HexNAc(3) 1517.5754 Hex(2) HexNAc(3) NeuAc NeuGc 1531.529513 dHex(2) Hex(2) HexNAc(3) NeuGc ---OR--- Hex(3) HexNAc(3) dHex NeuAc ---OR--- Hex(2) HexNAc(4) dHex Kdn 1532.549914 dHex(3) Hex(3) HexNAc(3) 1533.570315 Hex(8) Phos(3) 1536.321581 dHex Hex(2) HexNAc(2) NeuAc(2) Sulf 1538.469949 Hex(2) HexNAc(3) NeuGc(2) 1547.524427 dHex(4) Hex(2) HexNAc(2) Kdn 1564.564895 dHex Hex(2) HexNAc(4) NeuAc 1573.576463 dHex(3) Hex(2) HexNAc(4) 1574.596864 Hex HexNAc NeuGc(4) 1593.493521 dHex(4) Hex HexNAc(3) Kdn 1605.591444 Hex(4) HexNAc(4) Sulf(2) 1620.442414 dHex(3) Hex(2) HexNAc(3) Kdn ---OR--- Hex(3) HexNAc(2) dHex(3) NeuAc 1621.586359 dHex(2) Hex(2) HexNAc(5) 1631.618328 dHex(2) Hex(3) HexA HexNAc(3) Sulf 1643.501309 dHex Hex(4) HexA HexNAc(3) Sulf 1659.496223 Hex(3) HexNAc(3) NeuAc(2) 1677.587422 dHex(2) Hex(3) HexNAc(3) NeuAc ---OR--- Hex(2) HexNAc(4) dHex(2) Kdn 1678.607823 dHex(4) Hex(3) HexNAc(3) 1679.628224 Hex(9) Phos(3) 1698.374404 dHex(2) HexNAc(7) 1713.671426 Hex(2) HexNAc NeuGc(4) 1755.546345 Hex(3) HexNAc(3) NeuAc(2) Sulf 1757.544236 dHex(2) Hex(3) HexNAc(5) 1793.671151 dHex Hex(2) HexNAc(2) NeuGc(3) 1797.593295 dHex(2) Hex(4) HexA HexNAc(3) Sulf 1805.554132 Hex(2) HexNAc(3) NeuAc(3) 1806.630015 dHex Hex(3) HexNAc(3) NeuAc(2) 1823.64533 dHex(3) Hex(3) HexNAc(3) NeuAc 1824.665732 Hex(2) HexNAc(3) NeuGc(3) 1854.614759 Hex(10) Phos(3) 1860.427228 dHex Hex(2) HexNAc(4) NeuAc(2) 1864.67188 Hex HexNAc NeuGc(5) 1900.583852 Hex(4) HexNAc(4) NeuAc Sulf(2) 1911.53783 Hex(4) HexNAc(4) NeuGc Sulf(2) 1927.532745 dHex(2) Hex(3) HexNAc(3) NeuAc(2) 1969.703239 Hex(4) HexNAc(4) NeuAc Sulf(3) 1991.494645 dHex(2) Hex(2) HexNAc(2) 1022.38021 dHex Hex(3) HexNAc(2) 1038.375125 dHex Hex(2) HexNAc(3) 1079.401674 Hex(3) HexNAc(3) 1095.396588 dHex Hex(3) HexNAc(2) Sulf 1118.331939 dHex(2) Hex(3) HexNAc(2) 1184.433033 dHex Hex(4) HexNAc(2) 1200.427948 dHex(2) Hex(2) HexNAc(3) 1225.459583 dHex Hex(3) HexNAc(3) 1241.454497 Hex(4) HexNAc(3) 1257.449412 dHex(2) Hex(4) HexNAc(2) 1346.485857 dHex(2) Hex(3) HexNAc(3) 1387.512406 Hex(3) HexNAc(5) 1501.555334 Hex(4) HexNAc(3) NeuAc ---OR--- Hex(3) HexNAc(4) Kdn 1548.544828 dHex(2) Hex(3) HexNAc(4) 1590.591779 dHex Hex(3) HexNAc(5) 1647.613242 Hex(3) HexNAc(6) 1704.634706 Hex(4) HexNAc(4) NeuAc 1751.624201 dHex(2) Hex(4) HexNAc(4) ---OR--- Hex(4) HexNAc(4) dHex Pent Me 1752.644602 Hex(6) HexNAc(4) 1784.634431 Hex(5) HexNAc(5) 1825.660981 dHex Hex(3) HexNAc(6) 1850.692615 dHex Hex(4) HexNAc(4) NeuAc ---OR--- Hex(3) HexNAc(5) dHex Kdn 1897.68211 dHex(3) Hex(4) HexNAc(4) 1898.702511 dHex Hex(3) HexNAc(5) NeuAc 1938.708659 dHex(2) Hex(4) HexNAc(5) 1955.723975 SUMOylation by Giardia lamblia 469.228496 Carboxyethylpyrrole 122.036779 Fluorescein-tyramine adduct by peroxidase activity 493.116152 Fucosylated biantennary + 2 alphaGal 2092.745164 beta-Funaltrexamine 454.210387 Brij 58 synthetic polymer terminus 224.250401 Brij 35 synthetic polymer terminus 168.187801 Triton synthetic polymer terminus 188.156501 Tween 80 synthetic polymer terminus 263.237491 Tween 20 synthetic polymer terminus 165.164326 tris adduct causes 104 Da addition at asparagine-succinimide intermediate 104.071154 Biotin-Phenol 361.146012 LeudimethylArgGlyGly 411.259403 Simulate peptide-RNA conjugates 324.035867 transamidation of glycine ethyl ester to glutamine 86.036779 Pyro-Glu from E + Methylation -3.994915 Pyro-Glu from E + Methylation Medium -0.979006 LeumethylArgGlyGly 397.243753 NP-40 synthetic polymer terminus 220.182715 Iodoacetamide derivative of stilbene (reaction product with thiol) 452.034807 EZ-Link Sulfo-NHS-SS-Biotin 389.090154 Cytidine monophosphate 305.041287 Azidophenylalanine 41.001397 Cys alkylation by dimethylaminoethyl halide 71.073499 Glutarylation 114.031694 2-hydroxyisobutyrylation 86.036779 S-Methyl Methyl phosphorothioate 107.979873 Replacement of 3 protons by iron 52.911464 DTT adduct of cysteine 151.996571 Sulfenic Acid specific probe 161.09664 Water-quenched monolink of DSSO crosslinker 176.01433 Acetone chemical artifact 98.073165 Tris-quenched monolink of DSS/BS3 crosslinker 259.141973 formaldehyde induced modifications 30.010565 Ammonia-quenched monolink of DSSO crosslinker 175.030314 Tris-quenched monolink of DSSO crosslinker 279.077658 Alkene fragment of DSSO crosslinker 54.010565 Thiol fragment of DSSO crosslinker 85.982635 Sulfenic acid fragment of DSSO crosslinker 103.9932 BuUr fragment of BuUrBu crosslinker 111.032028 Bu fragment of BuUrBu crosslinker 85.052764 Water quenched monolink of BuUrBu crosslinker 214.095357 Tris quenched monolink of BuUrBu crosslinker 317.158686 Intact DSSO crosslinker 158.003765 Intact DSS/BS3 crosslinker 138.06808 Intact BuUrBu crosslinker 196.084792 Intact DTBP crosslinker 172.01289 Intact DST crosslinker 113.995309 Intact DSP/DTSSP crosslinker 173.980921 Intact SMCC cross-link 219.089543 Replacement of 3 protons by aluminium 23.958063 Ammonium-quenched monolink of BS2-G crosslinker 113.047679 Water-quenched monolink of BS2-G crosslinker 114.031694 Tris-quenched monolink of BS2-G crosslinker 217.095023 Ammonia quenched monolink of DMP crosslinker 139.110947 Intact DMP crosslinker 122.084398 glyoxal-derived AGE 21.98435 Methionine oxidation to aspartic semialdehyde -32.008456 Decarboxylation -30.010565 Aspartylurea -10.031969 In Bachi as Formylaspargine (typo?) 4.97893 aldehyde and ketone modifications 13.979265 Proline oxidation to 5-hydroxy-2-aminovaleric acid 18.010565 adduction of aflatoxin B1 Dialdehyde to lysine 310.047738 Tryptophan oxidation to beta-unsaturated-2,4-bis-tryptophandione 27.958529 Tryptophan oxidation to hydroxy-bis-tryptophandione 43.953444 Tryptophan oxidation to dihydroxy-N-formaylkynurenine 63.979659 methylglyoxal-derived carboxyethyllysine 71.013304 methylglyoxal-derived argpyrimidine 80.026215 crotonaldehyde-derived dimethyl-FDP-lysine 122.073165 methylglyoxal-derived tetrahydropyrimidine 154.026609 Hex(2) O(3) S 404.062462 Pent(2) 264.084518 Pent HexNAc 335.121631 Hex:1 Pent:2 Me:1 440.152991 HexNAc(2) Sulf 486.11556 Hex Pent(3) Me 572.19525 Hex(2) Pent(2) 588.190165 Hex(2) Pent(2) Me 602.205815 Hex(4) HexA 824.243382 Hex(2) HexNAc Pent HexA 835.259366 Hex(3) HexNAc HexA 865.269931 Hex HexNAc(2) dHex(2) Sulf 940.284201 HexA(2) HexNAc(3) 961.302294 dHex Hex(4) HexA 970.301291 Hex(5) HexA 986.296206 Hex(4) HexA HexNAc 1027.322755 dHex(3) Hex(3) HexNAc 1127.41157 Hex(6) HexNAc 1175.396314 Sulf dHex Hex HexNAc(4) 1200.385037 dHex Hex(2) HexNAc NeuAc(2) 1255.433762 dHex(3) Hex(3) HexNAc(2) 1330.490942 dHex(2) Hex HexNAc(4) Sulf 1346.442946 dHex Hex(2) HexNAc(4) Sulf(2) 1442.394675 Hex(9) 1458.475412 Sulf dHex(2) Hex(3) HexNAc(3) 1467.469221 Me dHex(2) Hex(5) HexNAc(2) 1522.554331 Sulf(2) dHex(2) Hex(2) HexNAc(4) 1588.452584 Hex(9) HexNAc 1661.554784 dHex(3) Hex(2) HexNAc(4) Sulf(2) 1734.510493 Hex(4) HexNAc(4) NeuGc 1767.619116 dHex(4) Hex(3) HexNAc(2) NeuAc(1) 1767.644268 Hex(3) HexNAc(5) NeuAc(1) 1792.65075 Hex(10) HexNAc(1) 1823.607608 dHex Hex(8) HexNAc(2) 1848.639242 Hex(3) HexNAc(4) NeuAc(2) 1880.666794 dHex(2) Hex(3) HexNAc(4) NeuAc 1881.687195 dHex(2) Hex(2) HexNAc(6) Sulf 1914.654515 Hex(5) HexNAc(4) NeuAc Ac 1955.687589 Hex(3) HexNAc(3) NeuAc(3) 1968.682838 Hex(5) HexNAc(4) NeuAc Ac(2) 1997.698154 Unidentified modification of 162.1258 found in open search 162.125595 Unidentified modification of 176.7462 found in open search 176.744957 Unidentified modification of 210.1616 found in open search 210.16198 Unidentified modification of 216.1002 found in open search 216.099774 Unidentified modification of 234.0742 found in open search 234.073953 Unidentified modification of 248.1986 found in open search 248.19876 Unidentified modification of 249.981 found in open search 249.981018 Unidentified modification of 301.9864 found in open search 301.986514 Unidentified modification of 306.0952 found in open search 306.095082 Unidentified modification of 420.0506 found in open search 420.050846 O-diethylphosphothione 152.006087 Ubiquitin D (FAT10) leaving after chymotrypsin digestion Cys-Ile-Gly-Gly 330.136176 Ubiquitin D (FAT10) leaving after trypsin digestion Gly-Asn-Leu-Leu-Phe-Leu-Ala-Cys-Tyr-Cys-Ile-Gly-Gly 1324.6308 O-dimethylphosphothione 123.974787 O-methylphosphothione 109.959137 heavy tris(2,4,6-trimethoxyphenyl)phosphonium acetic acid N-hydroxysuccinimide ester derivative 581.211328 carbobenzoxy-L-glutaminyl-glycine 320.100836 DST crosslinker cleaved by sodium periodate 55.989829 O-Dichloroethylphosphate 203.950987 O-methyl amino phosphinate 92.997965 Loss of O2; nitro photochemical decomposition 12.995249 Super Heavy Tandem Mass Tag 235.176741 TMTpro 16plex Tandem Mass Tag 304.207146