"ADO" ; "active" ; ; "Alzheimer's Disease Ontology is a knowledge-based ontology that encompasses varieties of concepts related to Alzheimer'S Disease, structured by upper level Basic Formal Ontology(BFO). This Ontology is enriched by the interrelated entities that demonstrate the network of the understanding on Alzheimer's disease and can be readily applied for text mining." ; "Alzheimer's Disease Ontology" ; ; "health" ; "https://github.com/Fraunhofer-SCAI-Applied-Semantics/ADO/issues" ; "http://purl.obolibrary.org/obo/ado.owl" ; _:b0 ; ; . "BFO" ; "active" ; "The upper level ontology upon which OBO Foundry ontologies are built." ; "Basic Formal Ontology" ; ; "upper" ; "https://github.com/BFO-ontology/BFO/issues" ; "https://groups.google.com/forum/#!forum/bfo-discuss" ; ; "http://purl.obolibrary.org/obo/bfo.owl" ; _:b1 ; ; ; . ; "CC BY 4.0" . _:b0 "Alpha Tom Kodamullil" ; "alpha.tom.kodamullil@scai.fraunhofer.de" . "http://purl.obolibrary.org/obo/ado.owl" . "AfPO" ; "active" ; "AfPO is an ontology that can be used in the study of diverse populations across Africa. It brings together publicly available demographic, anthropological and genetic data relating to African people in a standardised and structured format. The AfPO can be employed to classify African study participants comprehensively in prospective research studies. It can also be used to classify past study participants by mapping them using a language or ethnicity identifier or synonyms." ; "African Population Ontology" ; ; "organisms" ; "https://github.com/h3abionet/afpo/issues" ; "http://purl.obolibrary.org/obo/afpo.owl" ; _:b2 ; ; ; ; . _:b2 "Melek Chaouch" ; "mcmelek@msn.com" . "The main ontology in OWL. Contains all MP terms and links to other OBO ontologies" ; "AfPO (OWL edition)" ; "http://purl.obolibrary.org/obo/afpo.owl" . "A direct translation of the AfPO (OWL edition) into OBO format" ; "AfPO (OBO edition)" ; "http://purl.obolibrary.org/obo/afpo.obo" ; . "A direct translation of the AfPO (OWL edition) into OBOGraph JSON format" ; "AfPO (obographs JSON edition)" ; "http://purl.obolibrary.org/obo/afpo.json" ; . "AGRO" ; "active" ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; "Ontology of agronomic practices, agronomic techniques, and agronomic variables used in agronomic experiments" ; "Agronomy Ontology" ; ; ; "agriculture" ; "https://github.com/AgriculturalSemantics/agro/issues/" ; "http://purl.obolibrary.org/obo/agro.owl" ; _:b3 ; ; . "ENVO" ; "active" ; ; ; ; ; ; ; ; ; "An ontology of environmental systems, components, and processes." ; "Environment Ontology" ; ; ; ; "environment" ; "https://github.com/EnvironmentOntology/envo/issues/" ; "http://purl.obolibrary.org/obo/envo.owl" ; _:b4 ; ; ; ; ; ; ; ; . "FOODON" ; "active" ; ; ; ; ; ; ; ; ; "A broadly scoped ontology representing entities which bear a “food role”. It encompasses materials in natural ecosystems and agriculture that are consumed by humans and domesticated animals. This includes any generic (unbranded) raw or processed food material found in processing plants, markets, stores or food distribution points. FoodOn also imports nutritional component and dietary pattern terms from other OBO Foundry ontologies to support interoperability in diet and nutrition research" ; "Food Ontology" ; ; ; "diet, metabolomics, and nutrition" ; "https://github.com/FoodOntology/foodon/issues/" ; "http://purl.obolibrary.org/obo/foodon.owl" ; _:b5 ; ; ; . "GO" ; "active" ; "http://build.berkeleybop.org/view/GO" ; ; ; ; ; ; ; "An ontology for describing the function of genes and gene products" ; "Gene Ontology" ; ; ; ; "biological systems" ; "https://github.com/geneontology/go-ontology/issues/" ; "GO" ; ; "http://purl.obolibrary.org/obo/go.owl" ; _:b6 ; ; ; ; ; ; ; ; ; ; ; ; ; . "IAO" ; "active" ; _:b7 ; "An ontology of information entities." ; "Information Artifact Ontology" ; ; "information" ; "https://github.com/information-artifact-ontology/IAO/issues" ; "http://purl.obolibrary.org/obo/iao.owl" ; _:b8 ; ; ; ; ; . "NCBITaxon" ; "active" ; "An ontology representation of the NCBI organismal taxonomy" ; "NCBI organismal classification" ; ; "organisms" ; "ftp://ftp.ebi.ac.uk/pub/databases/taxonomy/taxonomy.dat" ; "https://github.com/obophenotype/ncbitaxon/issues" ; ; "http://purl.obolibrary.org/obo/ncbitaxon.owl" ; _:b9 ; ; ; ; ; ; ; . "OBI" ; "active" ; "http://build.berkeleybop.org/job/build-obi/" ; _:b10 ; "An integrated ontology for the description of life-science and clinical investigations" ; "Ontology for Biomedical Investigations" ; ; ; "investigations" ; "http://purl.obolibrary.org/obo/obi/tracker" ; "http://groups.google.com/group/obi-users" ; ; "http://purl.obolibrary.org/obo/obi.owl" ; _:b11 ; ; ; ; ; . "PATO" ; "active" ; "An ontology of phenotypic qualities (properties, attributes or characteristics)" ; "Phenotype And Trait Ontology" ; ; ; ; "phenotype" ; "https://github.com/pato-ontology/pato/issues" ; ; "http://purl.obolibrary.org/obo/pato.owl" ; _:b12 ; ; ; ; ; . "PECO" ; "active" ; "A structured, controlled vocabulary which describes the treatments, growing conditions, and/or study types used in plant biology experiments." ; "Plant Experimental Conditions Ontology" ; ; ; "investigations" ; "https://github.com/Planteome/plant-experimental-conditions-ontology/issues" ; "http://purl.obolibrary.org/obo/peco.owl" ; _:b13 ; ; ; ; . "PO" ; "active" ; ; "The Plant Ontology is a structured vocabulary and database resource that links plant anatomy, morphology and growth and development to plant genomics data." ; "Plant Ontology" ; ; ; ; "anatomy and development" ; "https://github.com/Planteome/plant-ontology/issues" ; ; "http://purl.obolibrary.org/obo/po.owl" ; _:b14 ; ; ; ; ; . "RO" ; "active" ; "Relationship types shared across multiple ontologies" ; "Relation Ontology" ; ; "upper" ; "https://github.com/oborel/obo-relations/issues" ; "https://groups.google.com/forum/#!forum/obo-relations" ; "http://purl.obolibrary.org/obo/ro.owl" ; _:b15 ; ; ; ; ; ; ; ; ; . "TO" ; "active" ; ; "A controlled vocabulary to describe phenotypic traits in plants." ; "Plant Trait Ontology" ; ; ; "phenotype" ; "https://github.com/Planteome/plant-trait-ontology/issues" ; ; "http://purl.obolibrary.org/obo/to.owl" ; _:b16 ; ; ; ; . "UO" ; "active" ; _:b17 ; "Metrical units for use in conjunction with PATO" ; "Units of measurement ontology" ; ; ; "phenotype" ; "https://github.com/bio-ontology-research-group/unit-ontology/issues" ; "http://purl.obolibrary.org/obo/uo.owl" ; _:b18 ; ; ; . "XCO" ; "active" ; _:b19 ; "Conditions under which physiological and morphological measurements are made both in the clinic and in studies involving humans or model organisms." ; "Experimental condition ontology" ; ; ; ; "health" ; "https://github.com/rat-genome-database/XCO-experimental-condition-ontology/issues" ; ; "http://purl.obolibrary.org/obo/xco.owl" ; _:b20 ; ; ; ; . "Data-driven Agricultural Research for Development: A Need for Data Harmonization Via Semantics." . _:b3 "Marie-Angélique Laporte" ; "m.a.laporte@cgiar.org" . "Contains all AgrO terms and links to other relevant ontologies." ; "AgrO" ; "http://purl.obolibrary.org/obo/agro.owl" . "AISM" ; "active" ; ; ; ; ; ; ; _:b21 ; "The AISM contains terms used in insect biodiversity research for describing structures of the exoskeleton and the skeletomuscular system. It aims to serve as the basic backbone of generalized terms to be expanded with order-specific terminology." ; "Ontology for the Anatomy of the Insect SkeletoMuscular system (AISM)" ; ; "anatomy and development" ; "https://github.com/insect-morphology/aism/issues" ; "http://purl.obolibrary.org/obo/aism.owl" ; _:b22 ; ; ; ; . "BSPO" ; "active" ; _:b23 ; "An ontology for representing spatial concepts, anatomical axes, gradients, regions, planes, sides, and surfaces" ; "Biological Spatial Ontology" ; ; ; "anatomy and development" ; "https://github.com/obophenotype/biological-spatial-ontology/issues" ; "http://purl.obolibrary.org/obo/bspo.owl" ; _:b24 ; ; ; . "CARO" ; "active" ; _:b25 ; "An upper level ontology to facilitate interoperability between existing anatomy ontologies for different species" ; "Common Anatomy Reference Ontology" ; ; "anatomy and development" ; "https://github.com/obophenotype/caro/issues" ; "http://purl.obolibrary.org/obo/caro.owl" ; _:b26 ; ; . "UBERON" ; "active" ; ; ; ; ; ; ; ; ; ; ; ; ; _:b27 ; ; "An integrated cross-species anatomy ontology covering animals and bridging multiple species-specific ontologies" ; "Uberon multi-species anatomy ontology" ; ; ; ; "anatomy and development" ; ; ; ; ; "https://github.com/obophenotype/uberon/issues" ; "https://lists.sourceforge.net/lists/listinfo/obo-anatomy" ; "Uberon" ; ; ; ; ; ; "http://purl.obolibrary.org/obo/uberon.owl" ; _:b28 ; ; ; ; ; ; ; ; ; . _:b21 "git clone https://github.com/insect-morphology/aism" . _:b22 "Jennifer C. Girón" ; "entiminae@gmail.com" . "http://purl.obolibrary.org/obo/aism.owl" . "http://purl.obolibrary.org/obo/aism.obo" . "http://purl.obolibrary.org/obo/aism.json" . "AMPHX" ; "active" ; ; _:b29 ; "An ontology for the development and anatomy of Amphioxus (Branchiostoma lanceolatum)." ; "The Amphioxus Development and Anatomy Ontology" ; ; "anatomy and development" ; "https://github.com/EBISPOT/amphx_ontology/issues" ; "http://purl.obolibrary.org/obo/amphx.owl" ; _:b30 ; ; ; . _:b29 "git clone https://github.com/EBISPOT/amphx_ontology.git" . ; "CC BY 3.0" . _:b30 "Hector Escriva" ; "hescriva@obs-banyuls.fr" . "http://purl.obolibrary.org/obo/amphx.owl" . "http://purl.obolibrary.org/obo/amphx.obo" . "APO" ; "active" ; _:b31 ; ; "A structured controlled vocabulary for the phenotypes of Ascomycete fungi" ; "Ascomycete phenotype ontology" ; ; ; "phenotype" ; "https://github.com/obophenotype/ascomycete-phenotype-ontology/issues" ; "http://purl.obolibrary.org/obo/apo.owl" ; _:b32 ; ; ; . _:b31 "obo2owl" ; "https://raw.githubusercontent.com/obophenotype/ascomycete-phenotype-ontology/master/apo.obo"^^ . "Ascomycota" . "New mutant phenotype data curation system in the Saccharomyces Genome Database" . _:b32 "Stacia R Engel" ; "stacia@stanford.edu" . "http://purl.obolibrary.org/obo/apo.owl" . "http://purl.obolibrary.org/obo/apo.obo" . "APOLLO_SV" ; "active" ; "An OWL2 ontology of phenomena in infectious disease epidemiology and population biology for use in epidemic simulation." ; "Apollo Structured Vocabulary" ; ; ; "health" ; "https://github.com/ApolloDev/apollo-sv/issues" ; "http://purl.obolibrary.org/obo/apollo_sv.owl" ; _:b33 ; ; . "The Apollo Structured Vocabulary: an OWL2 ontology of phenomena in infectious disease epidemiology and population biology for use in epidemic simulation" . _:b33 "William Hogan" ; "hoganwr@gmail.com" . "http://purl.obolibrary.org/obo/apollo_sv.owl" . "ARO" ; "active" ; "Antibiotic resistance genes and mutations" ; "Antibiotic Resistance Ontology" ; ; ; "microbiology" ; "https://github.com/arpcard/aro/issues" ; "https://mailman.mcmaster.ca/mailman/listinfo/card-l" ; "http://purl.obolibrary.org/obo/aro.owl" ; _:b34 ; ; . "CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database." . _:b34 "Andrew G. McArthur" ; "mcarthua@mcmaster.ca" . "http://purl.obolibrary.org/obo/aro.owl" . "BCO" ; "active" ; "An ontology to support the interoperability of biodiversity data, including data on museum collections, environmental/metagenomic samples, and ecological surveys." ; "Biological Collections Ontology" ; ; ; "organisms" ; "https://github.com/BiodiversityOntologies/bco/issues" ; "http://purl.obolibrary.org/obo/bco.owl" ; _:b35 ; ; . ; "CC0 1.0" . "Semantics in Support of Biodiversity Knowledge Discovery: An Introduction to the Biological Collections Ontology and Related Ontologies" . _:b35 "Ramona Walls" ; "rlwalls2008@gmail.com" . "http://purl.obolibrary.org/obo/bco.owl" . ; "CC BY 4.0" . "BioPortal Browser" ; "BioPortal" . _:b1 "Barry Smith" ; "phismith@buffalo.edu" . "http://purl.obolibrary.org/obo/bfo.owl" . "http://purl.obolibrary.org/obo/bfo.obo" . _:b23 "git clone https://github.com/obophenotype/biological-spatial-ontology.git" ; "vcs" . "Nose to tail, roots to shoots: spatial descriptors for phenotypic diversity in the Biological Spatial Ontology." . _:b24 "Chris Mungall" ; "cjmungall@lbl.gov" . "http://purl.obolibrary.org/obo/bspo.owl" . "http://purl.obolibrary.org/obo/bspo.obo" . "BTO" ; "active" ; _:b36 ; "A structured controlled vocabulary for the source of an enzyme comprising tissues, cell lines, cell types and cell cultures." ; "BRENDA tissue / enzyme source" ; ; ; "anatomy and development" ; "https://github.com/BRENDA-Enzymes/BTO/issues" ; "http://purl.obolibrary.org/obo/bto.owl" ; _:b37 ; ; ; ; ; . _:b36 "git clone https://github.com/BRENDA-Enzymes/BTO.git" . "The BRENDA Tissue Ontology (BTO): the first all-integrating ontology of all organisms for enzyme sources" . _:b37 "Christian-Alexander Dudek" ; "c.dudek@tu-braunschweig.de" . "http://purl.obolibrary.org/obo/bto.owl" . "http://purl.obolibrary.org/obo/bto.obo" . "http://purl.obolibrary.org/obo/bto.json" . _:b25 "obo2owl" ; "http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/anatomy/caro/caro.obo"^^ . _:b26 "Melissa Haendel" ; "haendel@ohsu.edu" . "http://purl.obolibrary.org/obo/caro.owl" . "CDAO" ; "active" ; _:b38 ; "a formalization of concepts and relations relevant to evolutionary comparative analysis" ; "Comparative Data Analysis Ontology" ; ; ; "organisms" ; "https://github.com/evoinfo/cdao/issues" ; "http://purl.obolibrary.org/obo/cdao.owl" ; _:b39 ; ; . _:b38 "owl2obo" ; "http://purl.obolibrary.org/obo/cdao.owl"^^ . "Initial Implementation of a Comparative Data Analysis Ontology" . _:b39 "Jim Balhoff" ; "balhoff@renci.org" . "http://purl.obolibrary.org/obo/cdao.owl" . "CDNO" ; "active" ; ; ; ; ; ; _:b40 ; "CDNO provides structured terminologies to describe nutritional attributes of material entities that contribute to human diet." ; "Compositional Dietary Nutrition Ontology" ; ; ; "diet, metabolomics, and nutrition" ; "https://github.com/CompositionalDietaryNutritionOntology/cdno/issues" ; "http://purl.obolibrary.org/obo/cdno.owl" ; _:b41 ; ; ; . "CHEBI" ; "active" ; _:b42 ; "A structured classification of molecular entities of biological interest focusing on 'small' chemical compounds." ; "Chemical Entities of Biological Interest" ; ; ; "chemistry and biochemistry" ; "https://github.com/ebi-chebi/ChEBI/issues" ; ; "http://purl.obolibrary.org/obo/chebi.owl" ; _:b43 ; ; ; ; ; ; ; ; . _:b40 "git clone https://github.com/CompositionalDietaryNutritionOntology/cdno.git" . ; "CC BY 3.0" . "Establishing a Common Nutritional Vocabulary - From Food Production to Diet" . _:b41 "Liliana Andres Hernandez" ; "landreshdz@gmail.com" . "http://purl.obolibrary.org/obo/cdno.owl" . "http://purl.obolibrary.org/obo/cdno.obo" . _:b42 "obo2owl" ; "ftp://ftp.ebi.ac.uk/pub/databases/chebi/ontology/chebi.obo"^^ . "ChEBI in 2016: Improved services and an expanding collection of metabolites." . "EBI CHEBI Browser" ; "CHEBI" . _:b43 "Adnan Malik" ; "amalik@ebi.ac.uk" . "http://purl.obolibrary.org/obo/chebi.owl" . "http://purl.obolibrary.org/obo/chebi.obo" . "chebi, compressed owl" ; "http://purl.obolibrary.org/obo/chebi.owl.gz" . "chebi_lite, no syns or xrefs" ; "http://purl.obolibrary.org/obo/chebi/chebi_lite.obo" . "chebi_core, no xrefs" ; "http://purl.obolibrary.org/obo/chebi/chebi_core.obo" . "CHEMINF" ; "active" ; _:b44 ; "Includes terms for the descriptors commonly used in cheminformatics software applications and the algorithms which generate them." ; "Chemical Information Ontology" ; ; ; "chemistry and biochemistry" ; "https://github.com/semanticchemistry/semanticchemistry/issues" ; "https://groups.google.com/forum/#!forum/cheminf-ontology" ; "http://purl.obolibrary.org/obo/cheminf.owl" ; _:b45 ; ; . _:b44 "owl2obo" ; "https://raw.githubusercontent.com/semanticchemistry/semanticchemistry/master/ontology/cheminf.owl"^^ . ; "CC0 1.0" . "The chemical information ontology: provenance and disambiguation for chemical data on the biological semantic web" . _:b45 "Egon Willighagen" ; "egon.willighagen@gmail.com" . "http://purl.obolibrary.org/obo/cheminf.owl" . "CHIRO" ; "active" ; ; ; ; ; ; ; ; "CHEBI provides a distinct role hierarchy. Chemicals in the structural hierarchy are connected via a 'has role' relation. CHIRO provides links from these roles to useful other classes in other ontologies. This will allow direct connection between chemical structures (small molecules, drugs) and what they do. This could be formalized using 'capable of', in the same way Uberon and the Cell Ontology link structures to processes." ; "CHEBI Integrated Role Ontology" ; ; ; "chemistry and biochemistry" ; "https://github.com/obophenotype/chiro/issues" ; "http://purl.obolibrary.org/obo/chiro.owl" ; _:b46 ; ; ; . "HP" ; "active" ; ; "A structured and controlled vocabulary for the phenotypic features encountered in human hereditary and other disease." ; "Human Phenotype Ontology" ; ; ; ; ; ; "phenotype" ; "https://github.com/obophenotype/human-phenotype-ontology/issues/" ; "https://groups.io/g/human-phenotype-ontology" ; ; ; "http://purl.obolibrary.org/obo/hp.owl" ; _:b47 ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; . "MP" ; "active" ; ; "Standard terms for annotating mammalian phenotypic data." ; "Mammalian Phenotype Ontology" ; ; ; "phenotype" ; "https://github.com/mgijax/mammalian-phenotype-ontology/issues" ; "https://groups.google.com/forum/#!forum/phenotype-ontologies-editors" ; ; ; ; "http://purl.obolibrary.org/obo/mp.owl" ; _:b48 ; ; ; ; ; ; . "PR" ; "active" ; _:b49 ; "An ontological representation of protein-related entities" ; "PRotein Ontology (PRO)" ; ; ; "chemistry and biochemistry" ; "https://github.com/PROconsortium/PRoteinOntology/issues" ; ; ; "http://purl.obolibrary.org/obo/pr.owl" ; _:b50 ; ; ; . "Extension of Roles in the ChEBI Ontology" . _:b46 "Nicole Vasilevsky" ; "vasilevs@ohsu.edu" . "http://purl.obolibrary.org/obo/chiro.owl" . "http://purl.obolibrary.org/obo/chiro.obo" . "CHMO" ; "active" ; "CHMO, the chemical methods ontology, describes methods used to" ; "Chemical Methods Ontology" ; ; "health" ; "https://github.com/rsc-ontologies/rsc-cmo/issues" ; "chemistry-ontologies@googlegroups.com" ; "http://purl.obolibrary.org/obo/chmo.owl" ; _:b51 ; ; . _:b51 "Colin Batchelor" ; "batchelorc@rsc.org" . "http://purl.obolibrary.org/obo/chmo.owl" . "CIDO" ; "active" ; "The Coronavirus Infectious Disease Ontology (CIDO) aims to ontologically represent and standardize various aspects of coronavirus infectious diseases, including their etiology, transmission, epidemiology, pathogenesis, diagnosis, prevention, and treatment." ; "Coronavirus Infectious Disease Ontology" ; ; ; "health" ; "https://github.com/cido-ontology/cido/issues" ; "cido-discuss@googlegroups.com" ; "http://purl.obolibrary.org/obo/cido.owl" ; _:b52 ; ; . "A comprehensive update on CIDO: the community-based coronavirus infectious disease ontology" . _:b52 "Yongqun Oliver He" ; "yongqunh@med.umich.edu" . "http://purl.obolibrary.org/obo/cido.owl" . "CIO" ; "active" ; "An ontology to capture confidence information about annotations." ; "Confidence Information Ontology" ; ; ; "information" ; "https://github.com/BgeeDB/confidence-information-ontology" ; "http://purl.obolibrary.org/obo/cio.owl" ; _:b53 ; ; ; . "The Confidence Information Ontology: a step towards a standard for asserting confidence in annotations" . _:b53 "Frédéric Bastian" ; "frederic.bastian@unil.ch" . "http://purl.obolibrary.org/obo/cio.owl" . "http://purl.obolibrary.org/obo/cio.obo" . "CL" ; "active" ; ; ; ; ; ; ; ; ; "The Cell Ontology is a structured controlled vocabulary for cell types in animals." ; "Cell Ontology" ; ; ; "anatomy and development" ; "https://github.com/obophenotype/cell-ontology/issues" ; "https://groups.google.com/g/cl_edit" ; "Cell Ontology" ; "http://purl.obolibrary.org/obo/cl.owl" ; _:b54 ; ; ; ; ; ; . "Metazoa" . "The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability." . _:b54 "Alexander Diehl" ; "addiehl@buffalo.edu" . "Complete ontology, plus inter-ontology axioms, and imports modules" ; "Main CL OWL edition" ; "owl-rdf/xml" ; "http://purl.obolibrary.org/obo/cl.owl" . "Complete ontology, plus inter-ontology axioms, and imports modules merged in" ; "CL obo format edition" ; "obo" ; "http://purl.obolibrary.org/obo/cl.obo" . "Basic version, no inter-ontology axioms" ; "Basic CL" ; "obo" ; "http://purl.obolibrary.org/obo/cl/cl-basic.obo" . "complete CL but with no imports or external axioms" ; "CL base module" ; "http://purl.obolibrary.org/obo/cl/cl-base.owl" . "CLAO" ; "active" ; ; _:b55 ; "CLAO is an ontology of anatomical terms employed in morphological descriptions for the Class Collembola (Arthropoda: Hexapoda)." ; "Collembola Anatomy Ontology" ; ; "anatomy and development" ; "https://github.com/luis-gonzalez-m/Collembola/issues" ; "http://purl.obolibrary.org/obo/clao.owl" ; _:b56 ; ; ; . _:b55 "git clone https://github.com/luis-gonzalez-m/Collembola.git" . _:b56 "Luis González-Montaña" ; "lagonzalezmo@unal.edu.co" . "http://purl.obolibrary.org/obo/clao.owl" . "http://purl.obolibrary.org/obo/clao.obo" . "CLO" ; "active" ; ; ; ; ; "An ontology to standardize and integrate cell line information and to support computer-assisted reasoning." ; "Cell Line Ontology" ; ; ; "anatomy and development" ; "https://github.com/CLO-Ontology/CLO/issues" ; "http://purl.obolibrary.org/obo/clo.owl" ; _:b57 ; ; . "DOID" ; "active" ; _:b58 ; ; "An ontology for describing the classification of human diseases organized by etiology." ; "Human Disease Ontology" ; ; ; ; "health" ; "https://github.com/DiseaseOntology/HumanDiseaseOntology/issues" ; ; "http://purl.obolibrary.org/obo/doid.owl" ; _:b59 ; ; ; ; . "CLO: The Cell Line Ontology" . _:b57 "Jie Zheng" ; "zhengj2007@gmail.com" . "http://purl.obolibrary.org/obo/clo.owl" . "CLYH" ; "active" ; ; ; ; _:b60 ; "The Clytia hemisphaerica Development and Anatomy Ontology (CLYH) describes the anatomical and developmental features of the Clytia hemisphaerica life cycle." ; "Clytia hemisphaerica Development and Anatomy Ontology" ; ; "anatomy and development" ; "https://github.com/EBISPOT/clyh_ontology/issues" ; "http://purl.obolibrary.org/obo/clyh.owl" ; _:b61 ; ; ; . _:b60 "git clone https://github.com/EBISPOT/clyh_ontology.git" . _:b61 "Lucas Leclere" ; "lucas.leclere@obs-vlfr.fr" . "http://purl.obolibrary.org/obo/clyh.owl" . "http://purl.obolibrary.org/obo/clyh.obo" . "CMO" ; "active" ; _:b62 ; "Morphological and physiological measurement records generated from clinical and model organism research and health programs." ; "Clinical measurement ontology" ; ; ; ; "health" ; "https://github.com/rat-genome-database/CMO-Clinical-Measurement-Ontology/issues" ; ; "http://purl.obolibrary.org/obo/cmo.owl" ; _:b63 ; ; ; ; . _:b62 "obo2owl" ; "https://download.rgd.mcw.edu/ontology/clinical_measurement/clinical_measurement.obo"^^ . "Three ontologies to define phenotype measurement data." . "The clinical measurement, measurement method and experimental condition ontologies: expansion, improvements and new applications." . "RGD Ontology Browser" ; "RGD" . _:b63 "Jennifer Smith" ; "jrsmith@mcw.edu" . "http://purl.obolibrary.org/obo/cmo.owl" . "http://purl.obolibrary.org/obo/cmo.obo" . "COB" ; "active" ; "COB brings together key terms from a wide range of OBO projects to improve interoperability." ; "Core Ontology for Biology and Biomedicine" ; ; "upper" ; "https://github.com/OBOFoundry/COB/issues" ; "http://purl.obolibrary.org/obo/cob.owl" ; _:b64 ; ; ; ; ; ; . _:b64 "Bjoern Peters" ; "bpeters@lji.org" . "Core Ontology for Biology and Biomedicine, main ontology" ; "COB" ; "http://purl.obolibrary.org/obo/cob.owl" . "base module for COB" ; "COB base module" ; "http://purl.obolibrary.org/obo/cob/cob-base.owl" . "COB with native IDs preserved rather than rewired to OBO IDs" ; "COB native module" ; "http://purl.obolibrary.org/obo/cob/cob-native.owl" . "COB to external" ; ; "http://purl.obolibrary.org/obo/cob/cob-to-external.owl" . "demo of COB including subsets of other ontologies (Experimental, for demo purposes only)" ; "COB demo ontology (experimental)" ; "http://purl.obolibrary.org/obo/cob/products/demo-cob.owl" . "COLAO" ; "active" ; ; ; ; ; ; ; ; "The Coleoptera Anatomy Ontology contains terms used for describing the anatomy and phenotype of beetles in biodiversity research. It has been built using the Ontology Develoment Kit, with the Ontology for the Anatomy of the Insect Skeleto-Muscular system (AISM) as a backbone." ; "Coleoptera Anatomy Ontology (COLAO)" ; ; "anatomy and development" ; "https://github.com/insect-morphology/colao/issues" ; "http://purl.obolibrary.org/obo/colao.owl" ; _:b65 ; ; ; . _:b65 "Jennifer C. Giron" ; "entiminae@gmail.com" . "http://purl.obolibrary.org/obo/colao.owl" . "http://purl.obolibrary.org/obo/colao.obo" . "CRO" ; "active" ; _:b66 ; "A classification of the diverse roles performed in the work leading to a published research output in the sciences. Its purpose to provide transparency in contributions to scholarly published work, to enable improved systems of attribution, credit, and accountability." ; "Contributor Role Ontology" ; ; "information" ; "https://github.com/data2health/contributor-role-ontology/issues" ; "http://purl.obolibrary.org/obo/cro.owl" ; _:b67 ; ; . _:b66 "git clone https://github.com/data2health/contributor-role-ontology.git" . ; "CC BY 2.0" . _:b67 "Marijane White" ; "whimar@ohsu.edu" . "CRO" ; "http://purl.obolibrary.org/obo/cro.owl" . "CTENO" ; "active" ; ; ; ; "An anatomical and developmental ontology for ctenophores (Comb Jellies)" ; "Ctenophore Ontology" ; ; "anatomy and development" ; "https://github.com/obophenotype/ctenophore-ontology/issues" ; "http://purl.obolibrary.org/obo/cteno.owl" ; _:b68 ; ; . "Ctenophore" . _:b68 "Chris Mungall" ; "cjmungall@lbl.gov" . "http://purl.obolibrary.org/obo/cteno.owl" . "CTO" ; "active" ; "The core Ontology of Clinical Trials (CTO) will serve as a structured resource integrating basic terms and concepts in the context of clinical trials. Thereby covering clinicaltrails.gov. CoreCTO will serve as a basic ontology to generate extended versions for specific applications such as annotation of variables in study documents from clinical trials." ; "CTO: Core Ontology of Clinical Trials" ; ; "health" ; "https://github.com/ClinicalTrialOntology/CTO/issues" ; "http://purl.obolibrary.org/obo/cto.owl" ; _:b69 ; ; . _:b69 "Dr. Alpha Tom Kodamullil" ; "alpha.tom.kodamullil@scai.fraunhofer.de" . "http://purl.obolibrary.org/obo/cto.owl" . "CVDO" ; "active" ; _:b70 ; "An ontology to describe entities related to cardiovascular diseases" ; "Cardiovascular Disease Ontology" ; ; "health" ; "https://github.com/OpenLHS/CVDO/issues" ; "http://purl.obolibrary.org/obo/cvdo.owl" ; _:b71 ; ; . _:b70 "owl2obo" ; "http://purl.obolibrary.org/obo/cvdo.owl"^^ ; . "The Cardiovascular Disease Ontology" . _:b71 "Paul Fabry" ; "paul.fabry@usherbrooke.ca" . "http://purl.obolibrary.org/obo/cvdo.owl" . "DDANAT" ; "active" ; _:b72 ; ; "A structured controlled vocabulary of the anatomy of the slime-mold Dictyostelium discoideum" ; "Dictyostelium discoideum anatomy" ; ; ; "anatomy and development" ; "https://github.com/dictyBase/migration-data/issues" ; "http://purl.obolibrary.org/obo/ddanat.owl" ; _:b73 ; ; ; ; . _:b72 "obo2owl" ; "https://raw.githubusercontent.com/dictyBase/migration-data/master/ontologies/dicty_anatomy.obo"^^ . "Dictyostelium discoideum" . "An anatomy ontology to represent biological knowledge in Dictyostelium discoideum" . _:b73 "Petra Fey" ; "pfey@northwestern.edu" . "http://purl.obolibrary.org/obo/ddanat.owl" . "http://purl.obolibrary.org/obo/ddanat.obo" . "DDPHENO" ; "active" ; _:b74 ; ; "A structured controlled vocabulary of phenotypes of the slime-mould Dictyostelium discoideum." ; "Dictyostelium discoideum phenotype ontology" ; ; ; "anatomy and development" ; "https://github.com/obophenotype/dicty-phenotype-ontology/issues" ; "http://purl.obolibrary.org/obo/ddpheno.owl" ; _:b75 ; ; ; ; . _:b74 "git clone https://github.com/obophenotype/dicty-phenotype-ontology.git" . "dictyBase and the Dicty Stock Center (version 2.0) - a progress report" . _:b75 "Petra Fey" ; "pfey@northwestern.edu" . "http://purl.obolibrary.org/obo/ddpheno.owl" . "http://purl.obolibrary.org/obo/ddpheno.obo" . "DIDEO" ; "active" ; "The Potential Drug-drug Interaction and Potential Drug-drug Interaction Evidence Ontology" ; "Drug-drug Interaction and Drug-drug Interaction Evidence Ontology" ; ; "chemistry and biochemistry" ; "https://github.com/DIDEO/DIDEO/issues" ; "http://purl.obolibrary.org/obo/dideo.owl" ; _:b76 ; ; . _:b76 "Mathias Brochhausen" ; "mbrochhausen@gmail.com" . "http://purl.obolibrary.org/obo/dideo.owl" . "DISDRIV" ; "active" ; _:b77 ; ; "Ontology for drivers and triggers of human diseases, built to classify ExO ontology exposure stressors. An application ontology. Built in collaboration with EnvO, ExO, ECTO and ChEBI." ; "Disease Drivers Ontology" ; ; "health" ; "https://github.com/DiseaseOntology/DiseaseDriversOntology/issues" ; ; "http://purl.obolibrary.org/obo/disdriv.owl" ; _:b78 ; ; ; . _:b77 "https://github.com/DiseaseOntology/DiseaseDriversOntology/tree/main/src/ontology/disdriv.owl"^^ . "Homo sapiens" . "DO Browser" ; "DO" . _:b78 "Lynn Schriml" ; "lynn.schriml@gmail.com" . "http://purl.obolibrary.org/obo/disdriv.owl" . _:b58 "obo2owl" ; "https://raw.githubusercontent.com/DiseaseOntology/HumanDiseaseOntology/master/src/ontology/doid.obo"^^ . "Disease Ontology 2015 update: an expanded and updated database of human diseases for linking biomedical knowledge through disease data" . "The Human Disease Ontology 2022 update" . "DO Browser" ; "DO" . _:b59 "Lynn Schriml" ; "lynn.schriml@gmail.com" . "Disease Ontology, OWL format. This file contains DO's is_a asserted hierarchy plus equivalent axioms to other OBO Foundry ontologies." ; "http://purl.obolibrary.org/obo/doid.owl" . "Disease Ontology, OBO format. This file omits the equivalent axioms." ; "http://purl.obolibrary.org/obo/doid.obo" . "FBcv" ; "active" ; _:b79 ; ; "An ontology of commonly encountered and/or high level Drosophila phenotypes." ; "Drosophila Phenotype Ontology" ; ; ; "phenotype" ; "https://github.com/FlyBase/drosophila-phenotype-ontology/issues" ; ; "http://purl.obolibrary.org/obo/dpo.owl" ; _:b80 ; ; ; ; . _:b79 "git clone https://github.com/FlyBase/drosophila-phenotype-ontolog.git" . "Drosophila" . "The Drosophila phenotype ontology." . "FlyBase Browser" ; "FB" . _:b80 "Clare Pilgrim" ; "cp390@cam.ac.uk" . "http://purl.obolibrary.org/obo/dpo.owl" . "http://purl.obolibrary.org/obo/dpo.obo" . "http://purl.obolibrary.org/obo/dpo.json" . "FBcv" ; "active" ; _:b81 ; "A structured controlled vocabulary used for various aspects of annotation by FlyBase." ; "FlyBase Controlled Vocabulary" ; ; "organisms" ; "https://github.com/FlyBase/flybase-controlled-vocabulary/issues" ; ; "http://purl.obolibrary.org/obo/fbcv.owl" ; _:b82 ; ; ; ; . "DRON" ; "active" ; _:b83 ; "An ontology to support comparative effectiveness researchers studying claims data." ; "The Drug Ontology" ; ; ; "health" ; "https://github.com/ufbmi/dron/issues" ; "http://purl.obolibrary.org/obo/dron.owl" ; _:b84 ; ; . _:b83 "owl2obo" ; "http://purl.obolibrary.org/obo/dron.owl"^^ . "Therapeutic indications and other use-case-driven updates in the drug ontology: anti-malarials, anti-hypertensives, opioid analgesics, and a large term request" . _:b84 "William Hogan" ; "hoganwr@gmail.com" . "http://purl.obolibrary.org/obo/dron.owl" . "DUO" ; "active" ; ; ; "DUO is an ontology which represent data use conditions." ; "Data Use Ontology" ; ; "information" ; "https://github.com/EBISPOT/DUO/issues" ; "http://purl.obolibrary.org/obo/duo.owl" ; _:b85 ; ; . _:b85 "Melanie Courtot" ; "mcourtot@gmail.com" . "http://purl.obolibrary.org/obo/duo.owl" . "ECAO" ; "active" ; ; ; ; _:b86 ; "An ontology for the development and anatomy of the different species of the phylum Echinodermata (NCBITaxon:7586)." ; "The Echinoderm Anatomy and Development Ontology" ; ; "anatomy and development" ; "https://github.com/echinoderm-ontology/ecao_ontology/issues" ; "http://purl.obolibrary.org/obo/ecao.owl" ; _:b87 ; ; ; . _:b86 "git clone https://github.com/echinoderm-ontology/ecao_ontology.git" . _:b87 "Charles Ettensohn" ; "ettensohn@cmu.edu" . "http://purl.obolibrary.org/obo/ecao.owl" . "http://purl.obolibrary.org/obo/ecao.obo" . "ECO" ; "active" ; "An ontology for experimental and other evidence statements." ; "Evidence and Conclusion Ontology" ; ; ; ; ; "investigations" ; ; "https://github.com/evidenceontology/evidenceontology/issues" ; ; "http://purl.obolibrary.org/obo/eco.owl" ; _:b88 ; ; ; . "ECO: the Evidence and Conclusion Ontology, an update for 2022." . "ECO, the Evidence & Conclusion Ontology: community standard for evidence information." . "Standardized description of scientific evidence using the Evidence Ontology (ECO)" . "NSF ABI-1458400" . "ECO Browser" ; "ECO" . _:b88 "Michelle Giglio" ; "mgiglio@som.umaryland.edu" . "http://purl.obolibrary.org/obo/eco.owl" . "http://purl.obolibrary.org/obo/eco.obo" . "ECOCORE" ; "active" ; ; ; ; ; ; ; ; ; ; ; "Ecocore is a community ontology for the concise and controlled description of ecological traits of organisms." ; "An ontology of core ecological entities" ; ; "environment" ; "https://github.com/EcologicalSemantics/ecocore/issues" ; "http://purl.obolibrary.org/obo/ecocore.owl" ; _:b89 ; ; ; . "PCO" ; "active" ; ; ; ; ; ; ; ; ; "An ontology about groups of interacting organisms such as populations and communities" ; "Population and Community Ontology" ; ; "environment" ; "https://github.com/PopulationAndCommunityOntology/pco/issues" ; "http://purl.obolibrary.org/obo/pco.owl" ; _:b90 ; ; . _:b89 "Pier Luigi Buttigieg" ; "p.buttigieg@gmail.com" . "http://purl.obolibrary.org/obo/ecocore.owl" . "http://purl.obolibrary.org/obo/ecocore.obo" . "ECTO" ; "active" ; ; ; ; ; ; ; ; ; ; ; ; ; ; "ECTO describes exposures to experimental treatments of plants and model organisms (e.g. exposures to modification of diet, lighting levels, temperature); exposures of humans or any other organisms to stressors through a variety of routes, for purposes of public health, environmental monitoring etc, stimuli, natural and experimental, any kind of environmental condition or change in condition that can be experienced by an organism or population of organisms on earth. The scope is very general and can include for example plant treatment regimens, as well as human clinical exposures (although these may better be handled by a more specialized ontology)." ; "Environmental conditions, treatments and exposures ontology" ; ; "environment" ; "https://github.com/EnvironmentOntology/environmental-exposure-ontology/issues" ; "http://purl.obolibrary.org/obo/ecto.owl" ; _:b91 ; ; ; ; ; ; ; . "ExO" ; "active" ; "Vocabularies for describing exposure data to inform understanding of environmental health." ; "Exposure ontology" ; ; "health" ; "https://github.com/CTDbase/exposure-ontology/issues" ; "http://purl.obolibrary.org/obo/exo.owl" ; _:b92 ; ; ; . "MAXO" ; "active" ; ; ; ; ; ; ; ; ; ; _:b93 ; "The Medical Action Ontology (MAxO) provides a broad view of medical actions and includes terms for medical procedures, interventions, therapies, treatments, and recommendations." ; "Medical Action Ontology" ; ; "health" ; "https://github.com/monarch-initiative/MAxO/issues" ; "http://purl.obolibrary.org/obo/maxo.owl" ; _:b94 ; ; ; ; ; ; ; . "NBO" ; "active" ; _:b95 ; "An ontology of human and animal behaviours and behavioural phenotypes" ; "Neuro Behavior Ontology" ; ; ; "biological systems" ; "https://github.com/obo-behavior/behavior-ontology/issues" ; ; "http://purl.obolibrary.org/obo/nbo.owl" ; _:b96 ; ; . "NCIT" ; "active" ; "NCI Thesaurus (NCIt)is a reference terminology that includes broad coverage of the cancer domain, including cancer related diseases, findings and abnormalities. The NCIt OBO Edition aims to increase integration of the NCIt with OBO Library ontologies. NCIt OBO Edition releases should be considered experimental." ; "NCI Thesaurus OBO Edition" ; ; "health" ; "https://github.com/NCI-Thesaurus/thesaurus-obo-edition/issues" ; "http://purl.obolibrary.org/obo/ncit.owl" ; _:b97 ; ; ; ; ; . _:b91 "Anne Thessen" ; "annethessen@gmail.com" . "http://purl.obolibrary.org/obo/ecto.owl" . "http://purl.obolibrary.org/obo/ecto.obo" . "http://purl.obolibrary.org/obo/ecto.json" . "http://purl.obolibrary.org/obo/ecto/ecto-base.owl" . "http://purl.obolibrary.org/obo/ecto/ecto-base.obo" . "http://purl.obolibrary.org/obo/ecto/ecto-base.json" . "EMAPA" ; "active" ; _:b98 ; ; "An ontology for mouse anatomy covering embryonic development and postnatal stages." ; "Mouse Developmental Anatomy Ontology" ; ; ; ; ; ; "anatomy and development" ; "https://github.com/obophenotype/mouse-anatomy-ontology/issues" ; "http://purl.obolibrary.org/obo/emapa.owl" ; _:b99 ; ; ; . _:b98 "obo2owl" ; "ftp://ftp.hgu.mrc.ac.uk/pub/MouseAtlas/Anatomy/EMAPA.obo"^^ . "Mus" . "An internet-accessible database of mouse developmental anatomy based on a systematic nomenclature" . "EMAP/EMAPA ontology of mouse developmental anatomy: 2013 update" . "Mouse Anatomy Ontologies: Enhancements and Tools for Exploring and Integrating Biomedical Data" . "Textual Anatomics: the Mouse Developmental Anatomy Ontology and the Gene Expression Database for Mouse Development (GXD)" . _:b99 "Terry Hayamizu" ; "Terry.Hayamizu@jax.org" . "http://purl.obolibrary.org/obo/emapa.owl" . "http://purl.obolibrary.org/obo/emapa.obo" . "The environment ontology: contextualising biological and biomedical entities" . "The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation" . _:b4 "Pier Luigi Buttigieg" ; "pier.buttigieg@awi.de" . "main ENVO OWL release" ; "http://purl.obolibrary.org/obo/envo.owl" . "ENVO in obographs JSON format" ; "http://purl.obolibrary.org/obo/envo.json" . "ENVO in OBO Format. May be lossy" ; "http://purl.obolibrary.org/obo/envo.obo" . "OBO-Basic edition of ENVO" ; "http://purl.obolibrary.org/obo/envo/subsets/envo-basic.obo" . "Earth Microbiome Project subset" ; "http://purl.obolibrary.org/obo/envo/subsets/envoEmpo.owl" . "GSC Lite subset of ENVO" ; "http://purl.obolibrary.org/obo/envo/subsets/EnvO-Lite-GSC.obo" ; . "EPIO" ; "active" ; ; "A application driven Epilepsy Ontology with official terms from the ILAE." ; "Epilepsy Ontology" ; ; "health" ; "https://github.com/SCAI-BIO/EpilepsyOntology/issues" ; "Epilepsy Ontology" ; "http://purl.obolibrary.org/obo/epio.owl" ; _:b100 ; ; ; . _:b100 "Alpha Tom Kodamullil" ; "alpha.tom.kodamullil@scai.fraunhofer.de" . "http://purl.obolibrary.org/obo/epio.owl" . "http://purl.obolibrary.org/obo/EPIO_merged.owl" . _:b92 "Anne Thessen" ; "annethessen@gmail.com" . "http://purl.obolibrary.org/obo/exo.owl" . "http://purl.obolibrary.org/obo/exo.obo" . "FAO" ; "active" ; _:b101 ; ; "A structured controlled vocabulary for the anatomy of fungi." ; "Fungal gross anatomy" ; ; "anatomy and development" ; "https://github.com/obophenotype/fungal-anatomy-ontology/issues" ; "http://purl.obolibrary.org/obo/fao.owl" ; _:b102 ; ; ; . _:b101 "git clone https://github.com/obophenotype/fungal-anatomy-ontology.git" ; "vcs" . "Fungal" . _:b102 "Val Wood" ; "vw253@cam.ac.uk" . "http://purl.obolibrary.org/obo/fao.owl" . "http://purl.obolibrary.org/obo/fao.obo" . "FBbt" ; "active" ; _:b103 ; ; "An ontology representing the gross anatomy of Drosophila melanogaster." ; "Drosophila gross anatomy" ; ; ; ; ; ; "anatomy and development" ; "http://purl.obolibrary.org/obo/fbbt/tracker" ; ; ; ; "http://purl.obolibrary.org/obo/fbbt.owl" ; _:b104 ; ; ; ; ; ; . _:b103 "git clone https://github.com/FlyBase/drosophila-anatomy-developmental-ontology.git" . "The Drosophila anatomy ontology" . "A strategy for building neuroanatomy ontologies" . "The Virtual Fly Brain Browser and Query Interface" . "FlyBase: anatomical data, images and queries" . "FlyBase Browser" ; "FB" . "Virtual Fly Brain" ; "VFB" . "BioPortal Browser" ; "BioPortal" . _:b104 "Clare Pilgrim" ; "cp390@cam.ac.uk" . "http://purl.obolibrary.org/obo/fbbt.owl" . "http://purl.obolibrary.org/obo/fbbt.obo" . "http://purl.obolibrary.org/obo/fbbt.json" . "http://purl.obolibrary.org/obo/fbbt/fbbt-simple.owl" . "http://purl.obolibrary.org/obo/fbbt/fbbt-simple.obo" . _:b81 "git clone https://github.com/FlyBase/flybase-controlled-vocabulary.git" . "FlyBase Browser" ; "FB" . _:b82 "Clare Pilgrim" ; "cp390@cam.ac.uk" . "http://purl.obolibrary.org/obo/fbcv.owl" . "http://purl.obolibrary.org/obo/fbcv.obo" . "http://purl.obolibrary.org/obo/fbcv.json" . "FBdv" ; "active" ; _:b105 ; ; "A structured controlled vocabulary of the development of Drosophila melanogaster." ; "Drosophila development" ; ; "anatomy and development" ; "http://purl.obolibrary.org/obo/fbdv/tracker" ; ; "http://purl.obolibrary.org/obo/fbdv.owl" ; _:b106 ; ; ; ; ; ; . _:b105 "git clone https://github.com/FlyBase/drosophila-developmental-ontology.git" . "FlyBase Browser" ; "FB" . _:b106 "Clare Pilgrim" ; "cp390@cam.ac.uk" . "http://purl.obolibrary.org/obo/fbdv.owl" . "http://purl.obolibrary.org/obo/fbdv.obo" . "http://purl.obolibrary.org/obo/fbdv.json" . "http://purl.obolibrary.org/obo/fbdv/fbdv-simple.owl" . "http://purl.obolibrary.org/obo/fbdv/fbdv-simple.obo" . "FIDEO" ; "active" ; "Food-Drug interactions automatically extracted from scientific literature" ; "Food Interactions with Drugs Evidence Ontology" ; ; "diet, metabolomics, and nutrition" ; "https://gitub.u-bordeaux.fr/erias/fideo/issues" ; "http://purl.obolibrary.org/obo/fideo.owl" ; _:b107 ; ; . _:b107 "Georgeta Bordea" ; "georgeta.bordea@u-bordeaux.fr" . "http://purl.obolibrary.org/obo/fideo.owl" . "FLOPO" ; "active" ; _:b108 ; ; "Traits and phenotypes of flowering plants occurring in digitized Floras" ; "Flora Phenotype Ontology" ; ; ; "phenotype" ; "https://github.com/flora-phenotype-ontology/flopoontology/issues" ; "http://purl.obolibrary.org/obo/flopo.owl" ; _:b109 ; ; . _:b108 "owl2obo" ; "https://github.com/flora-phenotype-ontology/flopoontology/raw/master/ontology/flopo.owl"^^ . "Viridiplantae" . "The flora phenotype ontology (FLOPO): tool for integrating morphological traits and phenotypes of vascular plants" . _:b109 "Robert Hoehndorf" ; "robert.hoehndorf@kaust.edu.sa" . "http://purl.obolibrary.org/obo/flopo.owl" . "FOBI" ; "active" ; ; ; "FOBI (Food-Biomarker Ontology) is an ontology to represent food intake data and associate it with metabolomic data" ; "Food-Biomarker Ontology" ; ; ; ; "diet, metabolomics, and nutrition" ; "https://github.com/pcastellanoescuder/FoodBiomarkerOntology/issues" ; "http://purl.obolibrary.org/obo/fobi.owl" ; _:b110 ; ; . "FOBI: an ontology to represent food intake data and associate it with metabolomic data" . "The fobitools framework: the first steps towards food enrichment analysis" . _:b110 "Pol Castellano Escuder" ; "polcaes@gmail.com" . "FOBI is an ontology to represent food intake data and associate it with metabolomic data" ; "owl-rdf/xml" ; "http://purl.obolibrary.org/obo/fobi.owl" . "inactive" ; _:b111 ; "A structured, controlled vocabulary which describes the treatments, growing conditions, and/or study types used in plant biology experiments." ; "Plant Environment Ontology" ; ; ; "environment" ; "https://github.com/Planteome/plant-environment-ontology/issues" ; _:b112 ; ; ; ; . "FoodOn: a harmonized food ontology to increase global food traceability, quality control and data integration" . _:b5 "Damion Dooley" ; "damion_dooley@sfu.ca" . "FoodOn ontology with import file references and over 9,000 food products" ; "owl-rdf/xml" ; "http://purl.obolibrary.org/obo/foodon.owl" . "FoodOn core ontology (currently the same as foodon.owl)" ; "owl-rdf/xml" ; "http://purl.obolibrary.org/obo/foodon_core.owl" . "FOVT" ; "active" ; ; ; ; ; ; ; ; ; "FuTRES Ontology of Vertebrate Traits is an application ontology used to convert vertebrate trait data in spreadsheet to triples. FOVT leverages the BioCollections Ontology (BCO) to link observations of individual specimens to their trait values. Traits are defined in the Ontology of Biological Attributes (OBA)." ; "FuTRES Ontology of Vertebrate Traits" ; ; "phenotype" ; "https://github.com/futres/fovt/issues" ; "http://purl.obolibrary.org/obo/fovt.owl" ; _:b113 ; ; ; ; ; . "OBA" ; "active" ; "A collection of biological attributes (traits) covering all kingdoms of life." ; "Ontology of Biological Attributes" ; ; ; "phenotype" ; "https://github.com/obophenotype/bio-attribute-ontology/issues" ; "http://purl.obolibrary.org/obo/oba.owl" ; _:b114 ; ; ; ; ; . _:b113 "Meghan Balk" ; "meghan.balk@gmail.com" . "http://purl.obolibrary.org/obo/fovt.owl" . "http://purl.obolibrary.org/obo/fovt.obo" . "http://purl.obolibrary.org/obo/fovt/fovt-base.owl" . "http://purl.obolibrary.org/obo/fovt/fovt-base.obo" . "FYPO" ; "active" ; _:b115 ; ; "FYPO is a formal ontology of phenotypes observed in fission yeast." ; "Fission Yeast Phenotype Ontology" ; ; ; "phenotype" ; "https://github.com/pombase/fypo/issues" ; "http://purl.obolibrary.org/obo/fypo.owl" ; _:b116 ; ; ; . _:b115 "obo2owl" ; "https://raw.githubusercontent.com/pombase/fypo/master/release/fypo.owl"^^ . "S. pombe" . "FYPO: The Fission Yeast Phenotype Ontology." . _:b116 "Val Wood" ; "vw253@cam.ac.uk" . "http://purl.obolibrary.org/obo/fypo.owl" . "http://purl.obolibrary.org/obo/fypo.obo" . "GALLONT" ; "active" ; ; ; ; ; ; ; ; ; "Ontology of plant gall phenotypes. Plant galls are novel plant structures, generated by plants in response to biotic stressors. This ontology is used to annotate gall phenotypes (e.g., their colors, textures, sizes, locations on the plant) in a semantic way, in order to facilitate discoveries about the genetic and physiologic mechanisms responsible for such phenotypes. The ontology can also be used as a controlled vocabulary for natural language descriptions of plant galls." ; "Plant Gall Ontology" ; ; "phenotype" ; "https://github.com/adeans/gallont/issues" ; "http://purl.obolibrary.org/obo/gallont.owl" ; _:b117 ; ; ; ; . "PORO" ; "active" ; ; ; ; "An ontology covering the anatomy of the taxon Porifera (sponges)" ; "Porifera Ontology" ; ; ; "anatomy and development" ; "https://github.com/obophenotype/porifera-ontology/issues" ; "http://purl.obolibrary.org/obo/poro.owl" ; _:b118 ; ; ; . _:b117 "Andy Deans" ; "adeans@psu.edu" . "http://purl.obolibrary.org/obo/gallont.owl" . "http://purl.obolibrary.org/obo/gallont.json" . "http://purl.obolibrary.org/obo/gallont.obo" . "GECKO" ; "active" ; "An ontology to represent genomics cohort attributes" ; "Genomics Cohorts Knowledge Ontology" ; ; "organisms" ; "https://github.com/IHCC-cohorts/GECKO/issues" ; "http://purl.obolibrary.org/obo/gecko.owl" ; _:b119 ; ; . _:b119 "Rebecca Jackson" ; "rbca.jackson@gmail.com" . "http://purl.obolibrary.org/obo/gecko.owl" . "GENEPIO" ; "active" ; ; ; ; ; ; "The Genomic Epidemiology Ontology (GenEpiO) covers vocabulary necessary to identify, document and research foodborne pathogens and associated outbreaks." ; "Genomic Epidemiology Ontology" ; ; "health" ; "https://github.com/GenEpiO/genepio/issues/" ; "http://purl.obolibrary.org/obo/genepio.owl" ; _:b120 ; ; ; . _:b120 "Damion Dooley" ; "damion_dooley@sfu.ca" . "http://purl.obolibrary.org/obo/genepio.owl" ; . "GENO" ; "active" ; _:b121 ; "An integrated ontology for representing the genetic variations described in genotypes, and their causal relationships to phenotype and diseases." ; "Genotype Ontology" ; ; "biological systems" ; "https://github.com/monarch-initiative/GENO-ontology/issues" ; "http://purl.obolibrary.org/obo/geno.owl" ; _:b122 ; ; . _:b121 "git clone https://github.com/monarch-initiative/GENO-ontology.git" . _:b122 "Matthew Brush" ; "mhb120@gmail.com" . "GENO" ; "http://purl.obolibrary.org/obo/geno.owl" . "GEO" ; "active" ; "An ontology of geographical entities" ; "Geographical Entity Ontology" ; ; "environment" ; "https://github.com/ufbmi/geographical-entity-ontology/issues" ; "http://purl.obolibrary.org/obo/geo.owl" ; _:b123 ; ; . _:b123 "Bill Hogan" ; "hoganwr@gmail.com" . "http://purl.obolibrary.org/obo/geo.owl" . "GNO" ; "active" ; _:b124 ; "GlyTouCan provides stable accessions for glycans described at varyious degrees of characterization, including compositions (no linkage) and topologies (no carbon bond positions or anomeric configurations). GNOme organizes these stable accessions for interative browsing, for text-based searching, and for automated reasoning with well-defined characterization levels." ; "Glycan Naming and Subsumption Ontology (GNOme)" ; ; ; "chemistry and biochemistry" ; "https://github.com/glygen-glycan-data/GNOme/issues" ; ; ; "http://purl.obolibrary.org/obo/gno.owl" ; _:b125 ; ; ; ; . _:b124 "git clone https://github.com/glygen-glycan-data/GNOme.git" . "GNOme - Glycan Naming and Subsumption Ontology" . "GNOme Glycan Structure Browser" ; "Structure Browser" . "GNOme Glycan Composition Browser" ; "Composition Browser" . _:b125 "Nathan Edwards" ; "nje5@georgetown.edu" . "Glycan Naming and Subsumption Ontology, OWL format (primary)" ; "http://purl.obolibrary.org/obo/gno.owl" . "Glycan Naming and Subsumption Ontology, OBO format (automated conversion from OWL)" ; "http://purl.obolibrary.org/obo/gno.obo" . "Glycan Naming and Subsumption Ontology, JSON format (automated conversion from OWL)" ; "http://purl.obolibrary.org/obo/gno.json" . "Bridging axioms between nifstd and go" ; "GO bridge to NIFSTD" ; ; . "The Gene Ontology (GO) Cellular Component Ontology: integration with SAO (Subcellular Anatomy Ontology) and other recent developments." . "All life" . "Gene ontology: tool for the unification of biology. The Gene Ontology Consortium" . "The Gene Ontology resource: enriching a GOld mine" . "Gene Ontology AmiGO 2 Browser" ; "AmiGO" . _:b6 "Suzi Aleksander" ; "suzia@stanford.edu" . "The main ontology in OWL. This is self contained and does not have connections to other OBO ontologies" ; "GO (OWL edition)" ; "http://purl.obolibrary.org/obo/go.owl" ; . "Equivalent to go.owl, in obo format" ; "GO (OBO Format edition)" ; "http://purl.obolibrary.org/obo/go.obo" ; . "Equivalent to go.owl, in obograph json format" ; "GO (JSON edition)" ; "http://purl.obolibrary.org/obo/go.json" ; . "The main ontology plus axioms connecting to select external ontologies, with subsets of those ontologies" ; "GO-Plus" ; "http://purl.obolibrary.org/obo/go/extensions/go-plus.owl" ; . "The main ontology plus axioms connecting to select external ontologies, excluding the external ontologies themselves" ; "GO Base Module" ; "http://purl.obolibrary.org/obo/go/go-base.owl" ; . "As go-plus.owl, in obographs json format" ; "GO-Plus" ; "http://purl.obolibrary.org/obo/go/extensions/go-plus.json" ; . "Basic version of the GO, filtered such that the graph is guaranteed to be acyclic and annotations can be propagated up the graph. The relations included are is a, part of, regulates, negatively regulates and positively regulates. This version excludes relationships that cross the 3 GO hierarchies." ; "GO-Basic, Filtered, for use with legacy tools" ; "http://purl.obolibrary.org/obo/go/go-basic.obo" ; . "As go-basic.obo, in json format" ; "GO-Basic, Filtered, for use with legacy tools (JSON)" ; "http://purl.obolibrary.org/obo/go/go-basic.json" ; . "Classes added to ncbitaxon for groupings such as prokaryotes" ; "GO Taxon Groupings" ; "http://purl.obolibrary.org/obo/go/extensions/go-taxon-groupings.owl" ; . "Equivalent to go.owl, but released daily. Note the snapshot release is not archived." ; "GO (OWL edition), daily snapshot release" ; "http://purl.obolibrary.org/obo/go/snapshot/go.owl" ; . "Equivalent to go.owl, but released daily. Note the snapshot release is not archived." ; "GO (OBO Format edition), daily snapshot release" ; "http://purl.obolibrary.org/obo/go/snapshot/go.obo" ; . "HANCESTRO" ; "active" ; "The Human Ancestry Ontology (HANCESTRO) provides a systematic description of the ancestry concepts used in the NHGRI-EBI Catalog of published genome-wide association studies." ; "Human Ancestry Ontology" ; ; ; "organisms" ; "https://github.com/EBISPOT/hancestro/issues" ; "http://purl.obolibrary.org/obo/hancestro.owl" ; _:b126 ; ; ; . "A standardized framework for representation of ancestry data in genomics studies, with application to the NHGRI-EBI GWAS Catalog" . _:b126 "Danielle Welter" ; "dwelter.ontologist@gmail.com" . "The full version of HANCESTRO in OWL format, with BFO upper hierarchy for easier integration with other ontologies" ; "HANCESTRO" ; "http://purl.obolibrary.org/obo/hancestro.owl" . "Base version of HANCESTRO" ; "HANCESTRO Base" ; "http://purl.obolibrary.org/obo/hancestro-base.owl" . "HAO" ; "active" ; _:b127 ; ; "A structured controlled vocabulary of the anatomy of the Hymenoptera (bees, wasps, and ants)" ; "Hymenoptera Anatomy Ontology" ; ; ; "anatomy and development" ; "https://github.com/hymao/hao/issues" ; "http://purl.obolibrary.org/obo/hao.owl" ; _:b128 ; ; ; ; . _:b127 "git clone https://github.com/hymao/hao.git" . "Hymenoptera" . "A gross anatomy ontology for hymenoptera" . _:b128 "Matt Yoder" ; "diapriid@gmail.com" . "http://purl.obolibrary.org/obo/hao.owl" . "http://purl.obolibrary.org/obo/hao.obo" . "http://purl.obolibrary.org/obo/hao/depictions.owl" . "HOM" ; "active" ; _:b129 ; "This ontology represents concepts related to homology, as well as other concepts used to describe similarity and non-homology." ; "Homology Ontology" ; ; ; "anatomy and development" ; "https://github.com/BgeeDB/homology-ontology/issues" ; "http://purl.obolibrary.org/obo/hom.owl" ; _:b130 ; ; . _:b129 "git clone https://github.com/BgeeDB/homology-ontology.git" ; "vcs" . "An ontology to clarify homology-related concepts" . _:b130 "Frederic Bastian" ; "bgee@sib.swiss" . "http://purl.obolibrary.org/obo/hom.owl" . "HsapDv" ; "active" ; "Life cycle stages for Human" ; "Human Developmental Stages" ; ; "anatomy and development" ; "https://github.com/obophenotype/developmental-stage-ontologies/issues" ; "http://purl.obolibrary.org/obo/hsapdv.owl" ; _:b131 ; ; ; ; . _:b131 "Frédéric Bastian" ; "frederic.bastian@unil.ch" . "http://purl.obolibrary.org/obo/hsapdv.owl" . "http://purl.obolibrary.org/obo/hsapdv.obo" . "HSO" ; "active" ; ; ; ; ; ; "The health Surveillance Ontology (HSO) focuses on \"surveillance system level data\", that is, data outputs from surveillance activities, such as number of samples collected, cases observed, etc. It aims to support One-Health surveillance, covering animal health, public health and food safety surveillance." ; "Health Surveillance Ontology" ; ; "health" ; "https://github.com/SVA-SE/HSO/issues/" ; "http://purl.obolibrary.org/obo/hso.owl" ; _:b132 ; ; ; . _:b132 "Fernanda Dorea" ; "fernanda.dorea@sva.se" . "http://purl.obolibrary.org/obo/hso.owl" ; . "HTN" ; "active" ; "An ontology for representing clinical data about hypertension, intended to support classification of patients according to various diagnostic guidelines" ; "Hypertension Ontology" ; ; "health" ; "https://github.com/aellenhicks/htn_owl/issues" ; "http://purl.obolibrary.org/obo/htn.owl" ; _:b133 ; ; . _:b133 "Amanda Hicks" ; "aellenhicks@gmail.com" . "HTN" ; "http://purl.obolibrary.org/obo/htn.owl" . _:b7 "owl2obo" ; "http://purl.obolibrary.org/obo/iao.owl"^^ . _:b8 "Jie Zheng" ; "zhengj2007@gmail.com" . "http://purl.obolibrary.org/obo/iao.owl" . "IAO ontology metadata" ; "http://purl.obolibrary.org/obo/iao/ontology-metadata.owl" ; . "IAO dev" ; "http://purl.obolibrary.org/obo/iao/dev/iao.owl" . "An ontology based on a theory of document acts describing what people can do with documents" ; "ontology of document acts" ; "http://purl.obolibrary.org/obo/iao/d-acts.owl" ; _:b134 . _:b134 "Mathias Brochhausen" ; "mbrochhausen@gmail.com" . "ICEO" ; "active" ; "ICEO is an integrated biological ontology for the description of bacterial integrative and conjugative elements (ICEs)." ; "Integrative and Conjugative Element Ontology" ; ; ; "microbiology" ; "https://github.com/ontoice/ICEO/issues" ; "http://purl.obolibrary.org/obo/iceo.owl" ; _:b135 ; ; . "ICEO, a biological ontology for representing and analyzing bacterial integrative and conjugative elements" . _:b135 "Meng LIU" ; "liumeng94@sjtu.edu.cn" . "http://purl.obolibrary.org/obo/iceo.owl" . "ICO" ; "active" ; "An ontology of clinical informed consents" ; "Informed Consent Ontology" ; ; "investigations" ; "https://github.com/ICO-ontology/ICO/issues" ; "http://purl.obolibrary.org/obo/ico.owl" ; _:b136 ; ; . _:b136 "Yongqun Oliver He" ; "yongqunh@med.umich.edu" . "http://purl.obolibrary.org/obo/ico.owl" . "IDO" ; "active" ; _:b137 ; ; "A set of interoperable ontologies that will together provide coverage of the infectious disease domain. IDO core is the upper-level ontology that hosts terms of general relevance across the domain, while extension ontologies host terms to specific to a particular part of the domain." ; "Infectious Disease Ontology" ; ; ; "health" ; "https://github.com/infectious-disease-ontology/infectious-disease-ontology/issues" ; "http://purl.obolibrary.org/obo/ido.owl" ; _:b138 ; ; . _:b137 "owl2obo" ; "http://purl.obolibrary.org/obo/ido.owl"^^ . "The Infectious Disease Ontology in the age of COVID-19" . _:b138 "Lindsay Cowell" ; "Lindsay.Cowell@utsouthwestern.edu" . "http://purl.obolibrary.org/obo/ido.owl" . "INO" ; "active" ; "An ontology of interactions and interaction networks" ; "Interaction Network Ontology" ; ; ; "biological systems" ; "https://github.com/INO-ontology/ino/issues" ; "http://purl.obolibrary.org/obo/ino.owl" ; _:b139 ; ; . "Development and application of an Interaction Network Ontology for literature mining of vaccine-associated gene-gene interactions" . _:b139 "Yongqun Oliver He" ; "yongqunh@med.umich.edu" . "http://purl.obolibrary.org/obo/ino.owl" . "LABO" ; "active" ; ; ; ; ; ; ; ; "LABO is an ontology of informational entities formalizing clinical laboratory tests prescriptions and reporting documents." ; "clinical LABoratory Ontology" ; ; ; "information" ; "https://github.com/OpenLHS/LABO/issues" ; "http://purl.obolibrary.org/obo/labo.owl" ; _:b140 ; ; . "OGMS" ; "active" ; ; "An ontology for representing treatment of disease and diagnosis and on carcinomas and other pathological entities" ; "Ontology for General Medical Science" ; ; ; ; "health" ; "https://github.com/OGMS/ogms/issues" ; "http://purl.obolibrary.org/obo/ogms.owl" ; _:b141 ; ; . "inactive" ; "An ontological version of MIABIS (Minimum Information About BIobank data Sharing)" ; "Ontologized MIABIS" ; ; "health" ; "https://github.com/OMIABIS/omiabis-dev/issues" ; _:b142 ; ; . "OMRSE" ; "active" ; _:b143 ; ; "The Ontology for Modeling and Representation of Social Entities (OMRSE) is an OBO Foundry ontology that represents the various entities that arise from human social interactions, such as social acts, social roles, social groups, and organizations." ; "Ontology for Modeling and Representation of Social Entities" ; ; ; "health" ; "https://github.com/mcwdsi/OMRSE/issues" ; "http://purl.obolibrary.org/obo/omrse.owl" ; _:b144 ; ; . "OPMI" ; "active" ; "The Ontology of Precision Medicine and Investigation (OPMI) aims to ontologically represent and standardize various entities and relations associated with precision medicine and related investigations at different conditions." ; "Ontology of Precision Medicine and Investigation" ; ; "investigations" ; "https://github.com/OPMI/opmi/issues" ; "http://groups.google.com/group/opmi-discuss" ; "http://purl.obolibrary.org/obo/opmi.owl" ; _:b145 ; ; . "LABO: An Ontology for Laboratory Test Prescription and Reporting" . _:b140 "Paul Fabry" ; "paul.fabry@usherbrooke.ca" . "http://purl.obolibrary.org/obo/labo.owl" . "LEPAO" ; "active" ; ; ; ; ; ; ; ; "The Lepidoptera Anatomy Ontology contains terms used for describing the anatomy and phenotype of moths and butterflies in biodiversity research. LEPAO is developed in part by BIOfid (The Specialised Information Service Biodiversity Research)." ; "Lepidoptera Anatomy Ontology" ; ; "anatomy and development" ; "https://github.com/insect-morphology/lepao/issues" ; "http://purl.obolibrary.org/obo/lepao.owl" ; _:b146 ; ; ; . _:b146 "Luis A. Gonzalez-Montana" ; "lagonzalezmo@unal.edu.co" . "http://purl.obolibrary.org/obo/lepao.owl" . "http://purl.obolibrary.org/obo/lepao.obo" . "MA" ; "active" ; _:b147 ; ; "A structured controlled vocabulary of the adult anatomy of the mouse (Mus)." ; "Mouse adult gross anatomy" ; ; "anatomy and development" ; "https://github.com/obophenotype/mouse-anatomy-ontology/issues" ; "http://purl.obolibrary.org/obo/ma.owl" ; _:b148 ; ; ; ; . _:b147 "obo2owl" ; "ftp://ftp.informatics.jax.org/pub/reports/adult_mouse_anatomy.obo"^^ . _:b148 "Terry Hayamizu" ; "Terry.Hayamizu@jax.org" . "http://purl.obolibrary.org/obo/ma.owl" . "http://purl.obolibrary.org/obo/ma.obo" . _:b93 "git clone https://github.com/monarch-initiative/MAxO.git" . _:b94 "Leigh Carmody" ; "Leigh.Carmody@jax.org" . "http://purl.obolibrary.org/obo/maxo.owl" . "http://purl.obolibrary.org/obo/maxo.obo" . "http://purl.obolibrary.org/obo/maxo.json" . "http://purl.obolibrary.org/obo/maxo/maxo-base.owl" . "http://purl.obolibrary.org/obo/maxo/maxo-base.obo" . "http://purl.obolibrary.org/obo/maxo/maxo-base.json" . "MCO" ; "active" ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; "Microbial Conditions Ontology is an ontology..." ; "Microbial Conditions Ontology" ; ; "investigations" ; "https://github.com/microbial-conditions-ontology/microbial-conditions-ontology/issues" ; "http://purl.obolibrary.org/obo/mco.owl" ; _:b149 ; ; ; . "MICRO" ; "inactive" ; "An ontology of prokaryotic phenotypic and metabolic characters" ; "Ontology of Prokaryotic Phenotypic and Metabolic Characters" ; ; "phenotype" ; "https://github.com/carrineblank/MicrO/issues" ; "http://purl.obolibrary.org/obo/micro.owl" ; _:b150 ; ; . "OMIT" ; "active" ; "Ontology to establish data exchange standards and common data elements in the microRNA (miR) domain" ; "Ontology for MIRNA Target" ; ; "chemistry and biochemistry" ; "https://github.com/OmniSearch/omit/issues" ; "http://purl.obolibrary.org/obo/omit.owl" ; _:b151 ; ; ; . "OMP" ; "active" ; _:b152 ; "An ontology of phenotypes covering microbes" ; "Ontology of Microbial Phenotypes" ; ; ; "phenotype" ; "https://github.com/microbialphenotypes/OMP-ontology/issues" ; "http://purl.obolibrary.org/obo/omp.owl" ; _:b153 ; ; ; . "ZECO" ; "active" ; _:b154 ; ; "Experimental conditions applied to zebrafish, developed to facilitate experiment condition annotation at ZFIN" ; "Zebrafish Experimental Conditions Ontology" ; ; "environment" ; "https://github.com/ybradford/zebrafish-experimental-conditions-ontology/issues" ; "http://purl.obolibrary.org/obo/zeco.owl" ; _:b155 ; ; ; ; . _:b149 "Citlalli Mejía-Almonte" ; "citlalli.mejiaalmonte@gmail.com" . "http://purl.obolibrary.org/obo/mco.owl" . "http://purl.obolibrary.org/obo/mco.obo" . "MCRO" ; "active" ; ; ; "An ontology representing the structure of model card reports - reports that describe basic characteristics of machine learning models for the public and consumers." ; "Model Card Report Ontology" ; ; ; "information technology" ; "https://github.com/UTHealth-Ontology/MCRO/issues" ; "http://purl.obolibrary.org/obo/mcro.owl" ; _:b156 ; ; . "SWO" ; "active" ; "The Software Ontology (SWO) is a resource for describing software tools, their types, tasks, versions, provenance and associated data. It contains detailed information on licensing and formats as well as software applications themselves, mainly (but not limited) to the bioinformatics community." ; "Software ontology" ; ; ; "information technology" ; "https://github.com/allysonlister/swo/issues" ; "http://purl.obolibrary.org/obo/swo.owl" ; _:b157 ; ; ; . "Toward a standard formal semantic representation of the model card report" . _:b156 "Tuan Amith" ; "muamith@utmb.edu" . "http://purl.obolibrary.org/obo/mcro.owl" . "MF" ; "active" ; _:b158 ; "The Mental Functioning Ontology is an overarching ontology for all aspects of mental functioning." ; "Mental Functioning Ontology" ; ; "health" ; "https://github.com/jannahastings/mental-functioning-ontology/issues" ; "http://purl.obolibrary.org/obo/mf.owl" ; _:b159 ; ; . _:b158 "owl2obo" ; "http://purl.obolibrary.org/obo/mf.owl"^^ . _:b159 "Janna Hastings" ; "janna.hastings@gmail.com" . "http://purl.obolibrary.org/obo/mf.owl" . "MFOEM" ; "active" ; _:b160 ; "An ontology of affective phenomena such as emotions, moods, appraisals and subjective feelings." ; "Emotion Ontology" ; ; "health" ; "https://github.com/jannahastings/emotion-ontology/issues" ; "http://purl.obolibrary.org/obo/mfoem.owl" ; _:b161 ; ; . _:b160 "owl2obo" ; "http://purl.obolibrary.org/obo/mfoem.owl"^^ . _:b161 "Janna Hastings" ; "janna.hastings@gmail.com" . "http://purl.obolibrary.org/obo/mfoem.owl" . "MFOMD" ; "active" ; "An ontology to describe and classify mental diseases such as schizophrenia, annotated with DSM-IV and ICD codes where applicable" ; "Mental Disease Ontology" ; ; "health" ; "https://github.com/jannahastings/mental-functioning-ontology/issues" ; "http://purl.obolibrary.org/obo/mfomd.owl" ; _:b162 ; ; . _:b162 "Janna Hastings" ; "janna.hastings@gmail.com" . "http://purl.obolibrary.org/obo/mfomd.owl" . "MI" ; "active" ; _:b163 ; "A structured controlled vocabulary for the annotation of experiments concerned with protein-protein interactions." ; "Molecular Interactions Controlled Vocabulary" ; ; "investigations" ; "https://github.com/HUPO-PSI/psi-mi-CV/issues" ; "http://purl.obolibrary.org/obo/mi.owl" ; _:b164 ; ; ; ; . _:b163 "obo2owl" ; "https://raw.githubusercontent.com/HUPO-PSI/psi-mi-CV/master/psi-mi.obo"^^ . _:b164 "Luana Licata" ; "luana.licata@gmail.com" . "http://purl.obolibrary.org/obo/mi.owl" . "http://purl.obolibrary.org/obo/mi.obo" . "MIAPA" ; "active" ; "An application ontology to formalize annotation of phylogenetic data." ; "MIAPA Ontology" ; ; ; "information" ; "https://github.com/evoinfo/miapa/issues" ; "http://groups.google.com/group/miapa-discuss" ; "http://purl.obolibrary.org/obo/miapa.owl" ; _:b165 ; ; . "Taking the First Steps towards a Standard for Reporting on Phylogenies: Minimum Information about a Phylogenetic Analysis (MIAPA)" . _:b165 "Hilmar Lapp" ; "hilmar.lapp@duke.edu" . "http://purl.obolibrary.org/obo/miapa.owl" . "MMO" ; "active" ; _:b166 ; "A representation of the variety of methods used to make clinical and phenotype measurements. " ; "Measurement method ontology" ; ; ; ; "health" ; "https://github.com/rat-genome-database/MMO-Measurement-Method-Ontology/issues" ; ; "http://purl.obolibrary.org/obo/mmo.owl" ; _:b167 ; ; ; ; . _:b166 "obo2owl" ; "https://download.rgd.mcw.edu/ontology/measurement_method/measurement_method.obo"^^ . "RGD Ontology Browser" ; "RGD" . _:b167 "Jennifer Smith" ; "jrsmith@mcw.edu" . "http://purl.obolibrary.org/obo/mmo.owl" . "http://purl.obolibrary.org/obo/mmo.obo" . "MmusDv" ; "active" ; _:b168 ; "Life cycle stages for Mus Musculus" ; "Mouse Developmental Stages" ; ; "anatomy and development" ; "https://github.com/obophenotype/developmental-stage-ontologies/issues" ; "http://purl.obolibrary.org/obo/mmusdv.owl" ; _:b169 ; ; ; ; . _:b168 "obo2owl" ; "https://raw.githubusercontent.com/obophenotype/developmental-stage-ontologies/master/src/mmusdv/mmusdv.obo"^^ . _:b169 "Frédéric Bastian" ; "frederic.bastian@unil.ch" . "http://purl.obolibrary.org/obo/mmusdv.owl" . "http://purl.obolibrary.org/obo/mmusdv.obo" . "MOD" ; "active" ; _:b170 ; "PSI-MOD is an ontology consisting of terms that describe protein chemical modifications" ; "Protein modification" ; ; ; "chemistry and biochemistry" ; "https://github.com/HUPO-PSI/psi-mod-CV/issues" ; "http://purl.obolibrary.org/obo/mod.owl" ; _:b171 ; ; ; . _:b170 "obo2owl" ; "https://raw.githubusercontent.com/HUPO-PSI/psi-mod-CV/master/PSI-MOD.obo"^^ . "The PSI-MOD community standard for representation of protein modification data" . _:b171 "Pierre-Alain Binz" ; "pierre-alain.binz@chuv.ch" . "PSI-MOD Ontology, OWL format" ; "PSI-MOD.owl" ; "http://purl.obolibrary.org/obo/mod.owl" . "PSI-MOD Ontology, OBO format" ; "PSI-MOD.obo" ; "http://purl.obolibrary.org/obo/mod.obo" . "MONDO" ; "active" ; ; "A global community effort to harmonize multiple disease resources to yield a coherent merged ontology." ; "Mondo Disease Ontology" ; ; ; "health" ; "https://github.com/monarch-initiative/mondo/issues" ; "https://groups.google.com/group/mondo-users" ; "Mondo" ; ; "http://purl.obolibrary.org/obo/mondo.owl" ; _:b172 ; ; ; ; ; ; . "Mondo: Unifying diseases for the world, by the world" . "Monarch Initiative Disease Browser" ; "Monarch" . _:b172 "Nicole Vasilevsky" ; "nicole@tislab.org" . "Complete ontology. Uses MONDO IDs. Imports merged. The original mondo.owl without merged imports and with equivalence axioms can now be obtained from the release pages and is called mondo-with-equivalents." ; "Main OWL edition" ; "owl-rdf/xml" ; "http://purl.obolibrary.org/obo/mondo.owl" . "As OWL. xrefs can be used as proxy for equivalence. Uses Mondo IDs." ; "obo-format edition" ; "obo" ; "http://purl.obolibrary.org/obo/mondo.obo" . "Equivalent to the OWL edition." ; "json edition" ; "obo" ; "http://purl.obolibrary.org/obo/mondo.json" . "The main ontology plus axioms connecting to select external ontologies, excluding the external ontologies themselves" ; "Mondo Base Module" ; "owl" ; "http://purl.obolibrary.org/obo/mondo/mondo-base.owl" . "MOP" ; "active" ; _:b173 ; "Processes at the molecular level" ; "Molecular Process Ontology" ; ; "chemistry and biochemistry" ; "https://github.com/rsc-ontologies/rxno/issues" ; "chemistry-ontologies@googlegroups.com" ; "http://purl.obolibrary.org/obo/mop.owl" ; _:b174 ; ; . _:b173 "owl2obo" ; "https://raw.githubusercontent.com/rsc-ontologies/rxno/master/mop.owl"^^ . _:b174 "Colin Batchelor" ; "batchelorc@rsc.org" . "Molecular Process Ontology" ; "http://purl.obolibrary.org/obo/mop.owl" . "Mammalia" ; "Mammalian" . "The Mammalian Phenotype Ontology as a unifying standard for experimental and high-throughput phenotyping data" . "MGI MP Browser" ; "MGI" . "RGD MP Browser" ; "RGD" . "Monarch Phenotype Page" ; "Monarch" . _:b48 "Sue Bello" ; "pheno@jax.org" . "The main ontology in OWL. Contains all MP terms and links to other OBO ontologies." ; "MP (OWL edition)" ; "http://purl.obolibrary.org/obo/mp.owl" ; . "A direct translation of the MP (OWL edition) into OBO format." ; "MP (OBO edition)" ; "http://purl.obolibrary.org/obo/mp.obo" ; . "For a description of the format see https://github.com/geneontology/obographs." ; "MP (obographs JSON edition)" ; "http://purl.obolibrary.org/obo/mp.json" ; . "The main ontology plus axioms connecting to select external ontologies, excluding axioms from the the external ontologies themselves." ; "MP Base Module" ; "http://purl.obolibrary.org/obo/mp/mp-base.owl" ; . "MPATH" ; "active" ; _:b175 ; ; "A structured controlled vocabulary of mutant and transgenic mouse pathology phenotypes" ; "Mouse pathology ontology" ; ; "health" ; "https://github.com/PaulNSchofield/mpath/issues" ; "http://purl.obolibrary.org/obo/mpath.owl" ; _:b176 ; ; . _:b175 "obo2owl" ; "https://raw.githubusercontent.com/PaulNSchofield/mpath/master/mpath.obo"^^ . _:b176 "Paul Schofield" ; "pns12@hermes.cam.ac.uk" . "http://purl.obolibrary.org/obo/mpath.owl" . "MPIO" ; "active" ; "An ontology of minimum information regarding potential drug-drug interaction information." ; "Minimum PDDI Information Ontology" ; ; "health" ; "https://github.com/MPIO-Developers/MPIO/issues" ; "http://purl.obolibrary.org/obo/mpio.owl" ; _:b177 ; ; . _:b177 "Mathias Brochhausen" ; "mbrochhausen@uams.edu" . "http://purl.obolibrary.org/obo/mpio.owl" . "MRO" ; "active" ; "An ontology for Major Histocompatibility Complex (MHC) restriction in experiments" ; "MHC Restriction Ontology" ; ; "chemistry and biochemistry" ; "https://github.com/IEDB/MRO/issues" ; "http://purl.obolibrary.org/obo/mro.owl" ; _:b178 ; ; . _:b178 "Bjoern Peters" ; "bpeters@lji.org" . "http://purl.obolibrary.org/obo/mro.owl" . "MS" ; "active" ; "https://raw.githubusercontent.com/HUPO-PSI/psi-ms-CV/master" ; ; ; _:b179 ; "A structured controlled vocabulary for the annotation of experiments concerned with proteomics mass spectrometry." ; "Mass spectrometry ontology" ; ; ; "investigations" ; "https://github.com/HUPO-PSI/psi-ms-CV/issues" ; "psidev-ms-vocab@lists.sourceforge.net" ; "MS" ; "http://purl.obolibrary.org/obo/ms.owl" ; _:b180 ; ; ; ; . _:b179 "obo2owl" ; "https://raw.githubusercontent.com/HUPO-PSI/psi-ms-CV/master/psi-ms.obo"^^ . "The HUPO proteomics standards initiative- mass spectrometry controlled vocabulary." . _:b180 "Gerhard Mayer" ; "gerhard.mayer@rub.de" . "http://purl.obolibrary.org/obo/ms.obo" . "http://purl.obolibrary.org/obo/ms.owl" . _:b95 "owl2obo" ; "https://raw.githubusercontent.com/obo-behavior/behavior-ontology/master/nbo.owl"^^ . "Analyzing gene expression data in mice with the Neuro Behavior Ontology" . "BioPortal Ontology Browser" ; "BioPortal" . _:b96 "George Gkoutos" ; "g.gkoutos@bham.ac.uk" . "http://purl.obolibrary.org/obo/nbo.owl" . "NCBI Taxonomy Browser" ; "NCBI" . _:b9 "Frederic Bastian" ; "frederic.bastian@unil.ch" . "Main release" ; "http://purl.obolibrary.org/obo/ncbitaxon.owl" . "OBO Format version of Main release" ; "http://purl.obolibrary.org/obo/ncbitaxon.obo" . "OBOGraphs JSON version of Main release" ; "http://purl.obolibrary.org/obo/ncbitaxon.json" . "taxslim" ; "http://purl.obolibrary.org/obo/ncbitaxon/subsets/taxslim.owl" ; . "taxslim disjointness axioms" ; "http://purl.obolibrary.org/obo/ncbitaxon/subsets/taxslim-disjoint-over-in-taxon.owl" ; . _:b97 "Melissa Haendel" ; "haendel@ohsu.edu" . "A direct transformation of the standard NCIt content using OBO-style term and ontology IRIs and annotation properties." ; "NCIt OBO Edition OWL format" ; "http://purl.obolibrary.org/obo/ncit.owl" . "NCIt OBO Edition OBO format" ; "http://purl.obolibrary.org/obo/ncit.obo" . "This version replaces NCIt terms with direct references to terms from other domain-specific OBO Library ontologies (e.g. cell types, cellular components, anatomy), supporting cross-ontology reasoning. The current release incorporates CL (cell types) and Uberon (anatomy)." ; "NCIt Plus" ; "http://purl.obolibrary.org/obo/ncit/ncit-plus.owl" . "This is a subset extracted from NCIt Plus, based on the [NCIt Neoplasm Core value set](https://evs.nci.nih.gov/ftp1/NCI_Thesaurus/Neoplasm/About_Core.html) as a starting point." ; "NCIt Plus Neoplasm Core" ; "http://purl.obolibrary.org/obo/ncit/neoplasm-core.owl" . "NCRO" ; "active" ; _:b181 ; "An ontology for non-coding RNA, both of biological origin, and engineered." ; "Non-Coding RNA Ontology" ; ; "investigations" ; "https://github.com/OmniSearch/ncro/issues" ; "ncro-devel@googlegroups.com, ncro-discuss@googlegroups.com" ; "http://purl.obolibrary.org/obo/ncro.owl" ; _:b182 ; ; . _:b181 "owl2obo" ; "http://purl.obolibrary.org/obo/ncro/prebuild/ncro.owl"^^ . _:b182 "Jingshan Huang" ; "huang@southalabama.edu" . "NCRO development version" ; "http://purl.obolibrary.org/obo/ncro/dev/ncro.owl" . "NGBO" ; "active" ; "The Next Generation Biobanking Ontology (NGBO) is an open application ontology representing contextual data about omics digital assets in biobank. The ontology focuses on capturing the information about three main activities: wet bench analysis used to generate omics data, bioinformatics analysis used to analyze and interpret data, and data management." ; "Next Generation Biobanking Ontology" ; ; "investigations" ; "https://github.com/Dalalghamdi/NGBO/issues" ; "http://purl.obolibrary.org/obo/ngbo.owl" ; _:b183 ; ; . _:b183 "Dalia Alghamdi" ; "dal.alghamdi92@gmail.com" . "http://purl.obolibrary.org/obo/ngbo.owl" . "NOMEN" ; "active" ; _:b184 ; "NOMEN is a nomenclatural ontology for biological names (not concepts). It encodes the goverened rules of nomenclature." ; "NOMEN - A nomenclatural ontology for biological names" ; ; "information" ; ; "https://github.com/SpeciesFileGroup/nomen/issues" ; "https://groups.google.com/forum/#!forum/nomen-discuss" ; "NOMEN" ; "http://purl.obolibrary.org/obo/nomen.owl" ; _:b185 ; ; . _:b184 "git clone https://github.com/SpeciesFileGroup/nomen.git" . "NSF ABI-1356381" . _:b185 "Matt Yoder" ; "diapriid@gmail.com" . "core ontology" ; "NOMEN" ; ; "http://purl.obolibrary.org/obo/nomen.owl" . "OAE" ; "active" ; _:b186 ; "A biomedical ontology in the domain of adverse events" ; "Ontology of Adverse Events" ; ; "health" ; "https://github.com/OAE-ontology/OAE/issues" ; "http://purl.obolibrary.org/obo/oae.owl" ; _:b187 ; ; . _:b186 "owl2obo" ; "https://raw.githubusercontent.com/OAE-ontology/OAE/master/src/oae_merged.owl"^^ . _:b187 "Yongqunh He" ; "yongqunh@med.umich.edu" . "http://purl.obolibrary.org/obo/oae.owl" . "OARCS" ; "active" ; "OArCS is an ontology describing the Arthropod ciruclatory system." ; "Ontology of Arthropod Circulatory Systems" ; ; "anatomy and development" ; "https://github.com/aszool/oarcs/issues" ; "http://purl.obolibrary.org/obo/oarcs.owl" ; _:b188 ; ; . _:b188 "Matt Yoder" ; "mjyoder@illinois.edu" . "http://purl.obolibrary.org/obo/oarcs.owl" . "The Ontology of Biological Attributes (OBA) - computational traits for the life sciences" . _:b114 "Chris Mungall" ; "cjmungall@lbl.gov" . "http://purl.obolibrary.org/obo/oba.owl" . "http://purl.obolibrary.org/obo/oba.obo" . "http://purl.obolibrary.org/obo/oba/subsets/oba-basic.obo" . "OBCS" ; "active" ; "A biomedical ontology in the domain of biological and clinical statistics." ; "Ontology of Biological and Clinical Statistics" ; ; "information technology" ; "https://github.com/obcs/obcs/issues" ; "http://purl.obolibrary.org/obo/obcs.owl" ; _:b189 ; ; . _:b189 "Jie Zheng" ; "jiezhen@med.umich.edu" . "http://purl.obolibrary.org/obo/obcs.owl" . _:b10 "http://purl.obofoundry.org/obo/obi/repository/trunk/src/ontology/branches/"^^ . "The Ontology for Biomedical Investigations" . "BioPortal Browser" ; "BioPortal" . _:b11 "Bjoern Peters" ; "bpeters@lji.org" . "The full version of OBI in OWL format" ; "OBI" ; "http://purl.obolibrary.org/obo/obi.owl" . "The OBO-format version of OBI" ; "OBI in OBO" ; "http://purl.obolibrary.org/obo/obi.obo" . "A collection of important high-level terms and their relations from OBI and other ontologies" ; "OBI Core" ; "http://purl.obolibrary.org/obo/obi/obi_core.owl" . "Base module for OBI" ; "OBI Base module" ; "http://purl.obolibrary.org/obo/obi/obi-base.owl" . "OBIB" ; "active" ; "An ontology built for annotation and modeling of biobank repository and biobanking administration" ; "Ontology for Biobanking" ; ; "investigations" ; "https://github.com/biobanking/biobanking/issues" ; "http://purl.obolibrary.org/obo/obib.owl" ; _:b190 ; ; . _:b190 "Justin Whorton" ; "jmwhorton@uams.edu" . "http://purl.obolibrary.org/obo/obib.owl" . "OCCO" ; "active" ; "An ontology representing occupations. It is designed to facilitate harmonization of existing occupation standards, such as the US Bureau of Labor Statistics Standard Occupational Classification (US SOC), the International Standard Classification of Occupations (ISCO), the UK National Statistics Standard Occupational Classification (UK SOC), and the European Skills, Competences, Qualifications and Occupations (ESCO) of the European Union." ; "Occupation Ontology" ; ; "information" ; "https://github.com/Occupation-Ontology/OccO/issues" ; ; "http://purl.obolibrary.org/obo/occo.owl" ; _:b191 ; ; . "BioPortal Ontology Browser" ; "BioPortal" . _:b191 "Jie Zheng" ; "zhengj2007@gmail.com" . "http://purl.obolibrary.org/obo/occo.owl" . "OGG" ; "active" ; "A formal ontology of genes and genomes of biological organisms." ; "The Ontology of Genes and Genomes" ; ; "biological systems" ; "https://bitbucket.org/hegroup/ogg/issues/" ; "http://purl.obolibrary.org/obo/ogg.owl" ; _:b192 ; ; . _:b192 "Yongqun Oliver He" ; "yongqunh@med.umich.edu" . "http://purl.obolibrary.org/obo/ogg.owl" . "Toward an ontological treatment of disease and diagnosis" . "Biomarkers in the Ontology for General Medical Science" . _:b141 "Brian Aevermann" ; "baeverma@jcvi.org" . "http://purl.obolibrary.org/obo/ogms.owl" . "OHD" ; "active" ; _:b193 ; "The Oral Health and Disease Ontology is used for representing the diagnosis and treatment of dental maladies." ; "Oral Health and Disease Ontology" ; ; ; "health" ; "https://github.com/oral-health-and-disease-ontologies/ohd-ontology/issues" ; "http://purl.obolibrary.org/obo/ohd.owl" ; _:b194 ; ; ; . _:b193 "owl2obo" ; "http://purl.obolibrary.org/obo/ohd.owl"^^ . "Structuring, reuse and analysis of electronic dental data using the Oral Health and Disease Ontology" . _:b194 "Bill Duncan" ; "wdduncan@gmail.com" . "http://purl.obolibrary.org/obo/ohd.owl" . "OHD dev" ; "http://purl.obolibrary.org/obo/ohd/dev/ohd.owl" . "OHMI" ; "active" ; "The Ontology of Host-Microbiome Interactions aims to ontologically represent and standardize various entities and relations related to microbiomes, microbiome host organisms (e.g., human and mouse), and the interactions between the hosts and microbiomes at different conditions." ; "Ontology of Host-Microbiome Interactions" ; ; "organisms" ; "https://github.com/ohmi-ontology/ohmi/issues" ; "http://groups.google.com/group/ohmi-discuss" ; "http://purl.obolibrary.org/obo/ohmi.owl" ; _:b195 ; ; . _:b195 "Yongqun Oliver He" ; "yongqunh@med.umich.edu" . "http://purl.obolibrary.org/obo/ohmi.owl" . "OHPI" ; "active" ; "OHPI is a community-driven ontology of host-pathogen interactions (OHPI) and represents the virulence factors (VFs) and how the mutants of VFs in the Victors database become less virulence inside a host organism or host cells. It is developed to represent manually curated HPI knowledge available in the PHIDIAS resource." ; "Ontology of Host Pathogen Interactions" ; ; ; "biological systems" ; "https://github.com/OHPI/ohpi/issues" ; "http://groups.google.com/group/ohpi-discuss" ; "http://purl.obolibrary.org/obo/ohpi.owl" ; _:b196 ; ; . "Victors: a web-based knowledge base of virulence factors in human and animal pathogens" . _:b196 "Edison Ong" ; "edong@umich.edu" . "http://purl.obolibrary.org/obo/ohpi.owl" . _:b151 "Jingshan Huang" ; "huang@southalabama.edu" . "http://purl.obolibrary.org/obo/omit.owl" . "OMO" ; "active" ; "An ontology specifies terms that are used to annotate ontology terms for all OBO ontologies. The ontology was developed as part of Information Artifact Ontology (IAO)." ; "OBO Metadata Ontology" ; ; "information" ; "https://github.com/information-artifact-ontology/ontology-metadata/issues" ; "http://purl.obolibrary.org/obo/omo.owl" ; _:b197 ; ; . _:b197 "Chris Mungall" ; "cjmungall@lbl.gov" . "http://purl.obolibrary.org/obo/omo.owl" . _:b152 "obo2owl" ; "https://raw.githubusercontent.com/microbialphenotypes/OMP-ontology-files/master/omp.obo"^^ . "An ontology for microbial phenotypes" . _:b153 "James C. Hu" ; "jimhu@tamu.edu" . "http://purl.obolibrary.org/obo/omp.owl" . "http://purl.obolibrary.org/obo/omp.obo" . _:b143 "owl2obo" ; "https://github.com/mcwdsi/OMRSE"^^ . "The ontology of medically related social entities: recent developments" . _:b144 "Bill Hogan" ; "hoganwr@gmail.com" . "http://purl.obolibrary.org/obo/omrse.owl" . "ONE" ; "active" ; ; ; ; "An ontology to standardize research output of nutritional epidemiologic studies." ; "Ontology for Nutritional Epidemiology" ; ; "diet, metabolomics, and nutrition" ; "https://github.com/cyang0128/Nutritional-epidemiologic-ontologies/issues" ; "Ontology for Nutritional Epidemiology" ; "http://purl.obolibrary.org/obo/one.owl" ; _:b198 ; ; ; . "ONS" ; "active" ; ; ; ; ; ; ; ; ; "An ontology for description of concepts in the nutritional studies domain." ; "Ontology for Nutritional Studies" ; ; ; "diet, metabolomics, and nutrition" ; "https://github.com/enpadasi/Ontology-for-Nutritional-Studies/issues" ; "Ontology for Nutritional Studies" ; "http://purl.obolibrary.org/obo/ons.owl" ; _:b199 ; ; ; . _:b198 "Chen Yang" ; "chenyangnutrition@gmail.com" . "http://purl.obolibrary.org/obo/one.owl" . "ONS: an ontology for a standardized description of interventions and observational studies in nutrition" . _:b199 "Francesco Vitali" ; "francesco.vitali@ibba.cnr.it" . "ONS latest release" ; "http://purl.obolibrary.org/obo/ons.owl" . "ONTOAVIDA" ; "active" ; ; ; ; ; ; "OntoAvida develops an integrated vocabulary for the description of the most widely-used computational approach for studying evolution using digital organisms (i.e., self-replicating computer programs that evolve within a user-defined computational environment)." ; "OntoAvida: ontology for Avida digital evolution platform" ; ; ; "simulation" ; "https://gitlab.com/fortunalab/ontoavida/-/issues" ; ; "http://purl.obolibrary.org/obo/ontoavida.owl" ; _:b200 ; ; ; . "GSSO" ; "active" ; _:b201 ; "The Gender, Sex, and Sexual Orientation (GSSO) ontology has terms for annotating interdisciplinary information concerning gender, sex, and sexual orientation for primary usage in the biomedical and adjacent sciences." ; "Gender, Sex, and Sexual Orientation (GSSO) ontology" ; ; "organisms" ; "https://github.com/Superraptor/GSSO/issues" ; "http://purl.obolibrary.org/obo/gsso.owl" ; _:b202 ; ; ; ; . "STATO" ; "active" ; "STATO is a general-purpose STATistics Ontology. Its aim is to provide coverage for processes such as statistical tests, their conditions of application, and information needed or resulting from statistical methods, such as probability distributions, variables, spread and variation metrics. STATO also covers aspects of experimental design and description of plots and graphical representations commonly used to provide visual cues of data distribution or layout and to assist review of the results." ; "The Statistical Methods Ontology" ; ; ; ; "information technology" ; "https://github.com/ISA-tools/stato/issues" ; "http://purl.obolibrary.org/obo/stato.owl" ; _:b203 ; ; . "Ontology for the Avida digital evolution platform" . "Ontoavida HTML Browser" ; "Human-readable (HTML)" . _:b200 "Miguel A. Fortuna" ; "fortuna@ebd.csic.es" . "The main ontology in OWL" ; "OWL" ; "http://purl.obolibrary.org/obo/ontoavida.owl" ; . "Equivalent to ontoavida.owl, in obo format" ; "OBO" ; "http://purl.obolibrary.org/obo/ontoavida.obo" ; . "ONTONEO" ; "active" ; _:b204 ; "The Obstetric and Neonatal Ontology is a structured controlled vocabulary to provide a representation of the data from electronic health records (EHRs) involved in the care of the pregnant woman, and of her baby." ; "Obstetric and Neonatal Ontology" ; ; "health" ; "https://github.com/ontoneo-project/Ontoneo/issues" ; "http://groups.google.com/group/ontoneo-discuss" ; ; "http://purl.obolibrary.org/obo/ontoneo.owl" ; _:b205 ; ; . _:b204 "http://purl.obolibrary.org/obo/ontoneo/ontoneo.owl"^^ . "BioPortal Browser" ; "BioPortal" . _:b205 "Fernanda Farinelli" ; "fernanda.farinelli@gmail.com" . "http://purl.obolibrary.org/obo/ontoneo.owl" . "OOSTT" ; "active" ; "An ontology built for representating the organizational components of trauma centers and trauma systems." ; "Ontology of Organizational Structures of Trauma centers and Trauma systems" ; ; "health" ; "https://github.com/OOSTT/OOSTT/issues" ; "http://purl.obolibrary.org/obo/oostt.owl" ; _:b206 ; ; . _:b206 "Mathias Brochhausen" ; "mbrochhausen@gmail.com" . "http://purl.obolibrary.org/obo/oostt.owl" . "OPL" ; "active" ; "A reference ontology for parasite life cycle stages." ; "Ontology for Parasite LifeCycle" ; ; "organisms" ; "https://github.com/OPL-ontology/OPL/issues" ; "http://purl.obolibrary.org/obo/opl.owl" ; _:b207 ; ; . _:b207 "Jie Zheng" ; "zhengj2007@gmail.com" . "http://purl.obolibrary.org/obo/opl.owl" . _:b145 "Yongqun Oliver He" ; "yongqunh@med.umich.edu" . "http://purl.obolibrary.org/obo/opmi.owl" . "ORNASEQ" ; "active" ; "An application ontology designed to annotate next-generation sequencing experiments performed on RNA." ; "Ontology of RNA Sequencing" ; ; "investigations" ; "https://github.com/safisher/ornaseq/issues" ; "http://purl.obolibrary.org/obo/ornaseq.owl" ; _:b208 ; ; . _:b208 "Stephen Fisher" ; "safisher@upenn.edu" . "http://purl.obolibrary.org/obo/ornaseq.owl" . "OVAE" ; "active" ; "A biomedical ontology in the domain of vaccine adverse events." ; "Ontology of Vaccine Adverse Events" ; ; "health" ; "https://github.com/OVAE-Ontology/ovae/issues" ; "http://purl.obolibrary.org/obo/ovae.owl" ; _:b209 ; ; . _:b209 "Yongqunh He" ; "yongqunh@med.umich.edu" . "http://purl.obolibrary.org/obo/ovae.owl" . "The anatomy of phenotype ontologies: principles, properties and applications" . "Using ontologies to describe mouse phenotypes" . "BioPortal Ontology Browser" ; "BioPortal" . _:b12 "George Gkoutos" ; "g.gkoutos@gmail.com" . "http://purl.obolibrary.org/obo/pato.owl" . "http://purl.obolibrary.org/obo/pato.obo" . "http://purl.obolibrary.org/obo/pato.json" . "Includes axioms linking to other ontologies, but no imports of those ontologies" ; "http://purl.obolibrary.org/obo/pato/pato-base.owl" . "PCL" ; "active" ; ; ; ; ; ; ; ; ; ; ; ; ; "Cell types that are provisionally defined by experimental techniques such as single cell or single nucleus transcriptomics rather than a straightforward & coherent set of properties." ; "Provisional Cell Ontology" ; ; "phenotype" ; "https://github.com/obophenotype/provisional_cell_ontology/issues" ; "http://purl.obolibrary.org/obo/pcl.owl" ; _:b210 ; ; ; ; ; ; ; ; ; ; ; ; ; . "SO" ; "active" ; _:b211 ; "A structured controlled vocabulary for sequence annotation, for the exchange of annotation data and for the description of sequence objects in databases." ; "Sequence types and features ontology" ; ; ; ; "chemistry and biochemistry" ; "https://github.com/The-Sequence-Ontology/SO-Ontologies/issues" ; "https://sourceforge.net/p/song/mailman/song-devel/" ; "http://purl.obolibrary.org/obo/so.owl" ; _:b212 ; ; ; ; ; ; . _:b210 "David Osumi-Sutherland" ; "davidos@ebi.ac.uk" . "http://purl.obolibrary.org/obo/pcl.owl" . "http://purl.obolibrary.org/obo/pcl.obo" . "http://purl.obolibrary.org/obo/pcl.json" . "http://purl.obolibrary.org/obo/pcl-base.owl" . "http://purl.obolibrary.org/obo/pcl-base.obo" . "http://purl.obolibrary.org/obo/pcl-base.json" . "http://purl.obolibrary.org/obo/pcl-full.owl" . "http://purl.obolibrary.org/obo/pcl-full.obo" . "http://purl.obolibrary.org/obo/pcl-full.json" . "http://purl.obolibrary.org/obo/pcl-simple.owl" . "http://purl.obolibrary.org/obo/pcl-simple.obo" . "http://purl.obolibrary.org/obo/pcl-simple.json" . _:b90 "Ramona Walls" ; "rlwalls2008@gmail.com" . "http://purl.obolibrary.org/obo/pco.owl" . "PDRO" ; "active" ; _:b213 ; "An ontology to describe entities related to prescription of drugs" ; "The Prescription of Drugs Ontology" ; ; ; "information" ; "https://github.com/OpenLHS/PDRO/issues" ; "http://purl.obolibrary.org/obo/pdro.owl" ; _:b214 ; ; . _:b213 "owl2obo" ; "http://purl.obolibrary.org/obo/pdro.owl"^^ . "The Prescription of Drug Ontology 2.0 (PDRO): More Than the Sum of Its Parts" . _:b214 "Paul Fabry" ; "paul.fabry@usherbrooke.ca" . "http://purl.obolibrary.org/obo/pdro.owl" . "The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics." . _:b13 "Pankaj Jaiswal" ; "jaiswalp@science.oregonstate.edu" . "http://purl.obolibrary.org/obo/peco.owl" . "http://purl.obolibrary.org/obo/peco.obo" . "PHIPO" ; "active" ; ; "PHIPO is a formal ontology of species-neutral phenotypes observed in pathogen-host interactions." ; "Pathogen Host Interaction Phenotype Ontology" ; ; ; "phenotype" ; "https://github.com/PHI-base/phipo/issues" ; "http://purl.obolibrary.org/obo/phipo.owl" ; _:b215 ; ; ; . "PHI-base in 2022: a multi-species phenotype database for Pathogen-Host Interactions" . _:b215 "Alayne Cuzick" ; "alayne.cuzick@rothamsted.ac.uk" . "http://purl.obolibrary.org/obo/phipo.owl" . "http://purl.obolibrary.org/obo/phipo.obo" . "PLANA" ; "active" ; ; ; "PLANA, the planarian anatomy ontology, encompasses the anatomy and life cycle stages for both __Schmidtea mediterranea__ biotypes." ; "planaria-ontology" ; ; ; "anatomy and development" ; "https://github.com/obophenotype/planaria-ontology/issues" ; "http://purl.obolibrary.org/obo/plana.owl" ; _:b216 ; ; ; . "Planarian Anatomy Ontology: a resource to connect data within and across experimental platforms" . _:b216 "Sofia Robb" ; "smr@stowers.org" . "http://purl.obolibrary.org/obo/plana.owl" . "http://purl.obolibrary.org/obo/plana.obo" . "PLANP" ; "active" ; ; ; ; ; "Planarian Phenotype Ontology is an ontology of phenotypes observed in the planarian Schmidtea mediterranea." ; "Planarian Phenotype Ontology" ; ; "phenotype" ; "https://github.com/obophenotype/planarian-phenotype-ontology/issues" ; "http://purl.obolibrary.org/obo/planp.owl" ; _:b217 ; ; ; . _:b217 "Sofia Robb" ; "smr@stowers.org" . "http://purl.obolibrary.org/obo/planp.owl" . "http://purl.obolibrary.org/obo/planp.obo" . "The plant ontology as a tool for comparative plant anatomy and genomic analyses." . "Planteome browser" ; "Planteome" . _:b14 "Pankaj Jaiswal" ; "jaiswalp@science.oregonstate.edu" . "http://purl.obolibrary.org/obo/po.owl" . "http://purl.obolibrary.org/obo/po.obo" . "Porifera" . "The Porifera Ontology (PORO): enhancing sponge systematics with an anatomy ontology" . _:b118 "Bob Thacker" ; "robert.thacker@stonybrook.edu" . "http://purl.obolibrary.org/obo/poro.owl" . "http://purl.obolibrary.org/obo/poro.obo" . "PPO" ; "active" ; ; "An ontology for describing the phenology of individual plants and populations of plants, and for integrating plant phenological data across sources and scales." ; "Plant Phenology Ontology" ; ; "phenotype" ; "https://github.com/PlantPhenoOntology/PPO/issues" ; "ppo-discuss@googlegroups.com" ; "http://purl.obolibrary.org/obo/ppo.owl" ; _:b218 ; ; . _:b218 "Ramona Walls" ; "rlwalls2008@gmail.com" . "http://purl.obolibrary.org/obo/ppo.owl" . _:b49 "obo2owl" ; "https://proconsortium.org/download/current/pro_nonreasoned.obo"^^ . "Protein Ontology (PRO): enhancing and scaling up the representation of protein entities" . "BioPortal Browser" ; "BioPortal" . "PRO Home" ; "PRO" . _:b50 "Darren Natale" ; "dan5@georgetown.edu" . "PRO after reasoning has been applied, OWL format." ; "pro_reasoned.owl" ; "http://purl.obolibrary.org/obo/pr.owl" . "PRO after reasoning has been applied, OBO format." ; "pro_reasoned.obo" ; "http://purl.obolibrary.org/obo/pr.obo" . "PROCO" ; "active" ; ; ; ; ; ; ; "PROCO covers process chemistry, the chemical field concerned with scaling up laboratory syntheses to commercially viable processes." ; "Process Chemistry Ontology" ; ; "chemistry and biochemistry" ; "https://github.com/proco-ontology/PROCO/issues" ; "http://purl.obolibrary.org/obo/proco.owl" ; _:b219 ; ; . "SBO" ; "active" ; _:b220 ; "Terms commonly used in Systems Biology, and in particular in computational modeling." ; "Systems Biology Ontology" ; ; "chemistry and biochemistry" ; "https://github.com/EBI-BioModels/SBO/issues" ; "http://purl.obolibrary.org/obo/sbo.owl" ; _:b221 ; ; . _:b219 "Wes Schafer" ; "wes_schafer@merck.com" . "http://purl.obolibrary.org/obo/proco.owl" . "PSDO" ; "active" ; ; ; ; ; _:b222 ; "Ontology to reproducibly study visualizations of clinical performance" ; "Performance Summary Display Ontology" ; ; "information" ; "https://github.com/Display-Lab/psdo/issues" ; "http://purl.obolibrary.org/obo/psdo.owl" ; _:b223 ; ; . _:b222 "https://github.com/Display-Lab/psdo.git" . _:b223 "Zach Landis-Lewis" ; "zachll@umich.edu" . "http://purl.obolibrary.org/obo/psdo.owl" . "PSO" ; "active" ; ; "The Plant Stress Ontology describes biotic and abiotic stresses that a plant may encounter." ; "Plant Stress Ontology" ; ; ; "agriculture" ; "https://github.com/Planteome/plant-stress-ontology/issues" ; "http://purl.obolibrary.org/obo/pso.owl" ; _:b224 ; ; ; . _:b224 "Laurel Cooper" ; "cooperl@oregonstate.edu" . "http://purl.obolibrary.org/obo/pso.owl" . "http://purl.obolibrary.org/obo/pso.obo" . "PW" ; "active" ; _:b225 ; "A controlled vocabulary for annotating gene products to pathways." ; "Pathway ontology" ; ; ; ; "biological systems" ; "https://github.com/rat-genome-database/PW-Pathway-Ontology/issues" ; ; "http://purl.obolibrary.org/obo/pw.owl" ; _:b226 ; ; ; ; . _:b225 "obo2owl" ; "https://download.rgd.mcw.edu/ontology/pathway/pathway.obo"^^ . "The Rat Genome Database pathway portal." . "The pathway ontology - updates and applications." . "RGD Ontology Browser" ; "RGD" . _:b226 "G. Thomas Hayman" ; "gthayman@mcw.edu" . "http://purl.obolibrary.org/obo/pw.owl" . "http://purl.obolibrary.org/obo/pw.obo" . "RBO" ; "active" ; ; ; ; ; ; ; ; "RBO is an ontology for the effects of radiation on biota in terrestrial and space environments." ; "Radiation Biology Ontology" ; ; "environment" ; "https://github.com/Radiobiology-Informatics-Consortium/RBO/issues" ; "http://purl.obolibrary.org/obo/rbo.owl" ; _:b227 ; ; ; ; ; ; ; . _:b227 "Daniel C. Berrios" ; "daniel.c.berrios@nasa.gov" . "http://purl.obolibrary.org/obo/rbo.owl" . "http://purl.obolibrary.org/obo/rbo.obo" . "http://purl.obolibrary.org/obo/rbo.json" . "http://purl.obolibrary.org/obo/rbo/rbo-base.owl" . "http://purl.obolibrary.org/obo/rbo/rbo-base.obo" . "http://purl.obolibrary.org/obo/rbo/rbo-base.json" . _:b15 "Chris Mungall" ; "cjmungall@lbl.gov" . "Canonical edition" ; "Relation Ontology" ; "http://purl.obolibrary.org/obo/ro.owl" . "The obo edition is less expressive than the OWL, and has imports merged in" ; "Relation Ontology in obo format" ; "http://purl.obolibrary.org/obo/ro.obo" . "Relation Ontology in obojson format" ; "http://purl.obolibrary.org/obo/ro.json" . "Minimal subset intended to work with BFO-classes" ; "RO Core relations" ; "http://purl.obolibrary.org/obo/ro/core.owl" ; . "Axioms defined within RO and to be used in imports for other ontologies" ; "RO base ontology" ; "http://purl.obolibrary.org/obo/ro/ro-base.owl" ; . "For use in ecology and environmental science" ; "Interaction relations" ; "http://purl.obolibrary.org/obo/ro/subsets/ro-interaction.owl" . "Ecology subset" ; "http://purl.obolibrary.org/obo/ro/subsets/ro-eco.owl" . "For use in neuroscience" ; "Neuroscience subset" ; "http://purl.obolibrary.org/obo/ro/subsets/ro-neuro.owl" ; . "RS" ; "active" ; _:b228 ; ; "Ontology of rat strains" ; "Rat Strain Ontology" ; ; ; "organisms" ; "https://github.com/rat-genome-database/RS-Rat-Strain-Ontology/issues" ; ; "http://purl.obolibrary.org/obo/rs.owl" ; _:b229 ; ; ; ; . _:b228 "obo2owl" ; "https://download.rgd.mcw.edu/ontology/rat_strain/rat_strain.obo"^^ . "Rattus" . "Rat Strain Ontology: structured controlled vocabulary designed to facilitate access to strain data at RGD." . "RGD Ontology Browser" ; "RGD" . _:b229 "Shur-Jen Wang" ; "sjwang@mcw.edu" . "http://purl.obolibrary.org/obo/rs.owl" . "http://purl.obolibrary.org/obo/rs.obo" . "RXNO" ; "active" ; _:b230 ; "Connects organic name reactions to their roles in an organic synthesis and to processes in MOP" ; "Name Reaction Ontology" ; ; "chemistry and biochemistry" ; "https://github.com/rsc-ontologies/rxno/issues" ; "chemistry-ontologies@googlegroups.com" ; "http://purl.obolibrary.org/obo/rxno.owl" ; _:b231 ; ; . _:b230 "owl2obo" ; "https://raw.githubusercontent.com/rsc-ontologies/rxno/master/rxno.owl"^^ . _:b231 "Colin Batchelor" ; "batchelorc@rsc.org" . "Name Reaction Ontology" ; "http://purl.obolibrary.org/obo/rxno.owl" . "SEPIO" ; "active" ; _:b232 ; "An ontology for representing the provenance of scientific claims and the evidence that supports them." ; "Scientific Evidence and Provenance Information Ontology" ; ; "investigations" ; "https://github.com/monarch-initiative/SEPIO-ontology/issues" ; "http://purl.obolibrary.org/obo/sepio.owl" ; _:b233 ; ; . _:b232 "git clone https://github.com/monarch-initiative/SEPIO-ontology.git" . _:b233 "Matthew Brush" ; "mhb120@gmail.com" . "SEPIO" ; "http://purl.obolibrary.org/obo/sepio.owl" . "SLSO" ; "active" ; "The Space Life Sciences Ontology is an application ontology and is intended to support the operation of NASA's Life Sciences Data Archive and other systems that contain space life science research data." ; "Space Life Sciences Ontology" ; ; "investigations" ; "https://github.com/nasa/LSDAO/issues" ; ; "http://purl.obolibrary.org/obo/slso.owl" ; _:b234 ; ; ; ; ; . "BioPortal Ontology Browser" ; "BioPortal" . _:b234 "Dan Berrios" ; "daniel.c.berrios@nasa.gov" . "http://purl.obolibrary.org/obo/slso.owl" . "http://purl.obolibrary.org/obo/slso.obo" . "http://purl.obolibrary.org/obo/slso.json" . "Includes axioms linking to other ontologies, but no imports of those ontologies" ; "http://purl.obolibrary.org/obo/slso-base.owl" . _:b211 "obo2owl" ; "https://raw.githubusercontent.com/The-Sequence-Ontology/SO-Ontologies/master/so.obo"^^ . "The Sequence Ontology: a tool for the unification of genome annotations." . "Evolution of the Sequence Ontology terms and relationships." . _:b212 "Karen Eilbeck" ; "keilbeck@genetics.utah.edu" . "Main SO OWL release" ; "http://purl.obolibrary.org/obo/so.owl" . "Main SO release in OBO Format" ; "http://purl.obolibrary.org/obo/so.obo" . "This subset includes only locatable sequence features and is designed for use in such outputs as GFF3" ; "Sequence Ontology Feature Annotation (SOFA) subset (OWL)" ; "http://purl.obolibrary.org/obo/so/subsets/SOFA.owl" . "This subset includes only locatable sequence features and is designed for use in such outputs as GFF3" ; "Sequence Ontology Feature Annotation (SOFA) subset (OBO Format)" ; "http://purl.obolibrary.org/obo/so/subsets/SOFA.obo" . "SPD" ; "active" ; _:b235 ; ; "An ontology for spider comparative biology including anatomical parts (e.g. leg, claw), behavior (e.g. courtship, combing) and products (i.g. silk, web, borrow)." ; "Spider Ontology" ; ; ; "anatomy and development" ; "https://github.com/obophenotype/spider-ontology/issues" ; "http://purl.obolibrary.org/obo/spd.owl" ; _:b236 ; ; . _:b235 "obo2owl" ; "https://raw.githubusercontent.com/obophenotype/spider-ontology/master/spider_comparative_biology.obo"^^ . "spiders" . "The Spider Anatomy Ontology (SPD)—A Versatile Tool to Link Anatomy with Cross-Disciplinary Data" . _:b236 "Martin Ramirez" ; "ramirez@macn.gov.ar" . "http://purl.obolibrary.org/obo/spd.owl" . "Experiment design driven FAIRification of omics data matrices, an exemplar" . "Semantic concept schema of the linear mixed model of experimental observations" . _:b203 "Philippe Rocca-Serra" ; "proccaserra@gmail.com" . "http://purl.obolibrary.org/obo/stato.owl" . "The Software Ontology (SWO): a resource for reproducibility in biomedical data analysis, curation and digital preservation" . _:b157 "Allyson Lister" ; "allyson.lister@oerc.ox.ac.uk" . "http://purl.obolibrary.org/obo/swo.owl" . "http://purl.obolibrary.org/obo/swo.json" . "SYMP" ; "active" ; _:b237 ; ; "An ontology of disease symptoms, with symptoms encompasing perceived changes in function, sensations or appearance reported by a patient indicative of a disease." ; "Symptom Ontology" ; ; ; ; "health" ; "https://github.com/DiseaseOntology/SymptomOntology/issues" ; "http://purl.obolibrary.org/obo/symp.owl" ; _:b238 ; ; ; . _:b237 "obo2owl" ; "https://raw.githubusercontent.com/DiseaseOntology/SymptomOntology/master/symp.obo"^^ . "GeMInA, Genomic Metadata for Infectious Agents, a geospatial surveillance pathogen database" . _:b238 "Lynn Schriml" ; "lynn.schriml@gmail.com" . "http://purl.obolibrary.org/obo/symp.owl" . "http://purl.obolibrary.org/obo/symp.obo" . "T4FS" ; "active" ; "A terminology for the skills necessary to make data FAIR and to keep it FAIR." ; "terms4FAIRskills" ; ; ; "information" ; "https://github.com/terms4fairskills/FAIRterminology/issues" ; "http://purl.obolibrary.org/obo/t4fs.owl" ; _:b239 ; ; ; ; ; ; ; . "EOSC Co-creation funded project 074: Delivery of a proof of concept for terms4FAIRskills: Technical report" . _:b239 "Allyson Lister" ; "allyson.lister@oerc.ox.ac.uk" . "http://purl.obolibrary.org/obo/t4fs.owl" . "http://purl.obolibrary.org/obo/t4fs.obo" . "http://purl.obolibrary.org/obo/t4fs.json" . "This community view of T4FS makes the ontology available in OWL without upper-level ontology (ULO) terms to give the user community a simpler view of the term hierarchy." ; "http://purl.obolibrary.org/obo/t4fs-community.owl" . "This community view of T4FS makes the ontology available in OBO format without upper-level ontology (ULO) terms to give the user community a simpler view of the term hierarchy." ; "http://purl.obolibrary.org/obo/t4fs-community.obo" . "This community view of T4FS makes the ontology available in JSON format without upper-level ontology (ULO) terms to give the user community a simpler view of the term hierarchy." ; "http://purl.obolibrary.org/obo/t4fs-community.json" . "TAXRANK" ; "active" ; "A vocabulary of taxonomic ranks (species, family, phylum, etc)" ; "Taxonomic rank vocabulary" ; ; ; "organisms" ; "https://github.com/phenoscape/taxrank/issues" ; "http://purl.obolibrary.org/obo/taxrank.owl" ; _:b240 ; ; ; . "The vertebrate taxonomy ontology: a framework for reasoning across model organism and species phenotypes" . _:b240 "Jim Balhoff" ; "balhoff@renci.org" . "http://purl.obolibrary.org/obo/taxrank.owl" . "http://purl.obolibrary.org/obo/taxrank.obo" . "Planteome browser" ; "Planteome" . _:b16 "Pankaj Jaiswal" ; "jaiswalp@science.oregonstate.edu" . "http://purl.obolibrary.org/obo/to.owl" . "http://purl.obolibrary.org/obo/to.obo" . "TRANS" ; "active" ; _:b241 ; "An ontology representing the disease transmission process during which the pathogen is transmitted directly or indirectly from its natural reservoir, a susceptible host or source to a new host." ; "Pathogen Transmission Ontology" ; ; ; ; "health" ; "https://github.com/DiseaseOntology/PathogenTransmissionOntology/issues" ; "http://purl.obolibrary.org/obo/trans.owl" ; _:b242 ; ; ; . _:b241 "obo2owl" ; "https://raw.githubusercontent.com/DiseaseOntology/PathogenTransmissionOntology/master/src/ontology/trans.obo"^^ . _:b242 "Lynn Schriml" ; "lynn.schriml@gmail.com" . "http://purl.obolibrary.org/obo/trans.owl" . "http://purl.obolibrary.org/obo/trans.obo" . "TTO" ; "active" ; ; "An ontology covering the taxonomy of teleosts (bony fish)" ; "Teleost taxonomy ontology" ; ; ; "organisms" ; "https://github.com/phenoscape/teleost-taxonomy-ontology/issues" ; "http://purl.obolibrary.org/obo/tto.owl" ; _:b243 ; ; ; . "Teleostei" . "The Teleost Taxonomy Ontology" . _:b243 "Jim Balhoff" ; "balhoff@renci.org" . "http://purl.obolibrary.org/obo/tto.obo" . "http://purl.obolibrary.org/obo/tto.owl" . "TXPO" ; "active" ; "TOXic Process Ontology (TXPO) systematizes a wide variety of terms involving toxicity courses and processes. The first version of TXPO focuses on liver toxicity." ; "Toxic Process Ontology" ; ; ; "chemistry and biochemistry" ; "https://github.com/txpo-ontology/TXPO/issues" ; ; ; "http://purl.obolibrary.org/obo/txpo.owl" ; _:b244 ; ; . "Ontological approach to the knowledge systematization of a toxic process and toxic course representation framework for early drug risk management" . "BioPortal Browser" ; "BioPortal" . "TOXPILOT" ; "TOXPILOT" . _:b244 "Yuki Yamagata" ; "yuki.yamagata@riken.jp" . "http://purl.obolibrary.org/obo/txpo.owl" . _:b27 "git clone https://github.com/obophenotype/uberon.git" . "Uberon, an integrative multi-species anatomy ontology" . "Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon" . "NIH R24-OD011883" . "NIH R01-HG004838" . "NIH P41-HG002273" . "NSF DEB-0956049" . "Gene Ontology AmiGO 2 Browser" ; "RGD" . "Gene Ontology AmiGO 2 Browser" ; "AmiGO (SUBSET)" . "Bgee gene expression queries" ; "Bgee (gene expression)" . "FANTOM5 Data Portal" ; "FANTOM5" . "INCF KnowledgeSpace Portal" ; "KnowledgeSpace" . _:b28 "Chris Mungall" ; "cjmungall@lbl.gov" . "core ontology" ; "Uberon" ; ; "http://purl.obolibrary.org/obo/uberon.owl" . "Axioms defined within Uberon and to be used in imports for other ontologies" ; "Uberon base ontology" ; "http://purl.obolibrary.org/obo/uberon/uberon-base.owl" ; . "Uberon edition that excludes external ontologies and most relations" ; "Uberon basic" ; "obo" ; ; "http://purl.obolibrary.org/obo/uberon/uberon-basic.obo" . "Metazoa"^^ ; "Uberon plus all metazoan ontologies" ; "Uberon collected metazoan ontology" ; ; "http://purl.obolibrary.org/obo/uberon/collected-metazoan.owl" ; . "Metazoa"^^ ; "Uberon and all metazoan ontologies with redundant species-specific terms removed" ; "Uberon composite metazoan ontology" ; ; "http://purl.obolibrary.org/obo/uberon/composite-metazoan.owl" ; . "Vertebrata"^^ ; "Uberon composite vertebrate ontology" ; ; "http://purl.obolibrary.org/obo/uberon/composite-vertebrate.owl" ; . _:b17 "obo2owl" ; "https://raw.githubusercontent.com/bio-ontology-research-group/unit-ontology/master/unit.obo"^^ . "The Units Ontology: a tool for integrating units of measurement in science" . _:b18 "George Gkoutos" ; "g.gkoutos@gmail.com" . "http://purl.obolibrary.org/obo/uo.owl" . "http://purl.obolibrary.org/obo/uo.obo" . "UPHENO" ; "active" ; _:b245 ; "The uPheno ontology integrates multiple phenotype ontologies into a unified cross-species phenotype ontology." ; "Unified phenotype ontology (uPheno)" ; ; ; ; "phenotype" ; "https://github.com/obophenotype/upheno/issues" ; "https://groups.google.com/forum/#!forum/phenotype-ontologies-editors" ; "http://purl.obolibrary.org/obo/upheno.owl" ; _:b246 ; ; ; ; . _:b245 "archive" ; "http://build.berkeleybop.org/job/build-pheno-ontologies/lastSuccessfulBuild/artifact/*zip*/archive.zip"^^ . "Phenotype Ontologies Traversing All The Organisms (POTATO) workshop aims to reconcile logical definitions across species" . "Phenotype Ontologies Traversing All The Organisms (POTATO) workshop: 2nd edition" . _:b246 "Nicole Vasilevsky" ; "vasilevs@ohsu.edu" . "uPheno 1 is no longer actively maintained, please start using uPheno 2 (see below)." ; "uPheno 1 (inactive)" ; "http://purl.obolibrary.org/obo/upheno.owl" ; . "No longer actively maintained." ; "uPheno MP-HP equivalence axioms" ; "http://purl.obolibrary.org/obo/upheno/mp-hp-view.owl" ; . "The new version of uPheno, along with species independent phenotypes amd additional phenotype relations. The ontology is still in Beta status, but we recommend users to migrate their infrastructures to uPheno 2 as uPheno 1 is no longer actively maintained." ; "uPheno 2" ; "http://purl.obolibrary.org/obo/upheno/v2/upheno.owl" ; . "VBO" ; "active" ; ; "Vertebrate Breed Ontology is an ontology created to serve as a single computable resource for vertebrate breed names." ; "Vertebrate Breed Ontology" ; ; "organisms" ; "https://github.com/monarch-initiative/vertebrate-breed-ontology/issues" ; "http://purl.obolibrary.org/obo/vbo.owl" ; _:b247 ; ; ; ; ; ; ; . _:b247 "Sabrina Toro" ; "Sabrina@tislab.org" . "http://purl.obolibrary.org/obo/vbo.owl" . "http://purl.obolibrary.org/obo/vbo.obo" . "http://purl.obolibrary.org/obo/vbo.json" . "http://purl.obolibrary.org/obo/vbo/vbo-base.owl" . "http://purl.obolibrary.org/obo/vbo/vbo-base.obo" . "http://purl.obolibrary.org/obo/vbo/vbo-base.json" . "VO" ; "active" ; _:b248 ; "VO is a biomedical ontology in the domain of vaccine and vaccination." ; "Vaccine Ontology" ; ; ; ; "health" ; "https://github.com/vaccineontology/VO/issues" ; "http://purl.obolibrary.org/obo/vo.owl" ; _:b249 ; ; . _:b248 "https://raw.githubusercontent.com/vaccineontology/VO/master/src/VO_merged.owl"^^ . "Ontology representation and analysis of vaccine formulation and administration and their effects on vaccine immune responses" . "Mining of vaccine-associated IFN-γ gene interaction networks using the Vaccine Ontology" . _:b249 "Yongqunh He" ; "yongqunh@med.umich.edu" . "http://purl.obolibrary.org/obo/vo.owl" . "VT" ; "active" ; _:b250 ; "An ontology of traits covering vertebrates" ; "Vertebrate trait ontology" ; ; "phenotype" ; "https://github.com/AnimalGenome/vertebrate-trait-ontology/issues" ; "http://purl.obolibrary.org/obo/vt.owl" ; _:b251 ; ; . _:b250 "svn co http://phenotype-ontologies.googlecode.com/svn/trunk/src/ontology/vt" ; "vcs" . _:b251 "Carissa Park" ; "caripark@iastate.edu" . "http://purl.obolibrary.org/obo/vt.owl" . "VTO" ; "active" ; "Comprehensive hierarchy of extinct and extant vertebrate taxa." ; "Vertebrate Taxonomy Ontology" ; ; ; "organisms" ; "https://github.com/phenoscape/vertebrate-taxonomy-ontology/issues" ; "http://purl.obolibrary.org/obo/vto.owl" ; _:b252 ; ; ; . _:b252 "Jim Balhoff" ; "balhoff@renci.org" . "http://purl.obolibrary.org/obo/vto.owl" . "http://purl.obolibrary.org/obo/vto.obo" . "WBbt" ; "active" ; _:b253 ; ; "A structured controlled vocabulary of the anatomy of Caenorhabditis elegans." ; "C. elegans Gross Anatomy Ontology" ; ; ; "anatomy and development" ; "https://github.com/obophenotype/c-elegans-gross-anatomy-ontology/issues" ; "http://purl.obolibrary.org/obo/wbbt.owl" ; _:b254 ; ; ; . _:b253 "git clone https://github.com/obophenotype/c-elegans-gross-anatomy-ontology.git" . "Caenorhabditis" . "Building a cell and anatomy ontology of Caenorhabditis elegans" . _:b254 "Raymond Lee" ; "raymond@caltech.edu" . "http://purl.obolibrary.org/obo/wbbt.owl" . "http://purl.obolibrary.org/obo/wbbt.obo" . "WBls" ; "active" ; _:b255 ; ; "A structured controlled vocabulary of the development of Caenorhabditis elegans." ; "C. elegans development ontology" ; ; ; "anatomy and development" ; "https://github.com/obophenotype/c-elegans-development-ontology/issues" ; "http://purl.obolibrary.org/obo/wbls.owl" ; _:b256 ; ; ; . _:b255 "git clone https://github.com/obophenotype/c-elegans-development-ontology.git" . "WormBase: a modern Model Organism Information Resource" . _:b256 "Chris Grove" ; "cgrove@caltech.edu" . "http://purl.obolibrary.org/obo/wbls.owl" . "http://purl.obolibrary.org/obo/wbls.obo" . "WBPhenotype" ; "active" ; _:b257 ; ; "A structured controlled vocabulary of Caenorhabditis elegans phenotypes" ; "C. elegans phenotype" ; ; ; "phenotype" ; "https://github.com/obophenotype/c-elegans-phenotype-ontology/issues" ; "http://purl.obolibrary.org/obo/wbphenotype.owl" ; _:b258 ; ; ; ; . _:b257 "git clone https://github.com/obophenotype/c-elegans-phenotype-ontology.git" . "Worm Phenotype Ontology: integrating phenotype data within and beyond the C. elegans community." . _:b258 "Chris Grove" ; "cgrove@caltech.edu" . "http://purl.obolibrary.org/obo/wbphenotype.owl" . "http://purl.obolibrary.org/obo/wbphenotype.obo" . "http://purl.obolibrary.org/obo/wbphenotype/wbphenotype-base.owl" . "XAO" ; "active" ; _:b259 ; ; "XAO represents the anatomy and development of the African frogs Xenopus laevis and tropicalis." ; "Xenopus Anatomy Ontology" ; ; ; ; "anatomy and development" ; "https://github.com/xenopus-anatomy/xao/issues" ; "http://purl.obolibrary.org/obo/xao.owl" ; _:b260 ; ; ; . _:b259 "obo2owl" ; "https://raw.githubusercontent.com/xenopus-anatomy/xao/master/xenopus_anatomy.obo"^^ . "Xenopus" . "An ontology for Xenopus anatomy and development." . "Enhanced XAO: the ontology of Xenopus anatomy and development underpins more accurate annotation of gene expression and queries on Xenbase." . _:b260 "Erik Segerdell" ; "Erik.Segerdell@cchmc.org" . "http://purl.obolibrary.org/obo/xao.owl" . "http://purl.obolibrary.org/obo/xao.obo" . _:b19 "obo2owl" ; "https://download.rgd.mcw.edu/ontology/experimental_condition/experimental_condition.obo"^^ . "RGD Ontology Browser" ; "RGD" . _:b20 "Jennifer Smith" ; "jrsmith@mcw.edu" . "http://purl.obolibrary.org/obo/xco.owl" . "http://purl.obolibrary.org/obo/xco.obo" . "XLMOD" ; "active" ; "A structured controlled vocabulary for cross-linking reagents used with proteomics mass spectrometry." ; "HUPO-PSI cross-linking and derivatization reagents controlled vocabulary" ; ; "chemistry and biochemistry" ; "https://github.com/HUPO-PSI/xlmod-CV/issues" ; "psidev-ms-vocab@lists.sourceforge.net" ; "xlmod" ; "http://purl.obolibrary.org/obo/xlmod.owl" ; _:b261 ; ; ; ; . _:b261 "Lutz Fischer" ; "lutz.fischer@tu-berlin.de" . "http://purl.obolibrary.org/obo/xlmod.obo" . "http://purl.obolibrary.org/obo/xlmod.owl" . "XPO" ; "active" ; ; ; ; ; ; ; ; ; ; "XPO represents anatomical, cellular, and gene function phenotypes occurring throughout the development of the African frogs Xenopus laevis and tropicalis." ; "Xenopus Phenotype Ontology" ; ; ; "phenotype" ; "https://github.com/obophenotype/xenopus-phenotype-ontology/issues" ; "http://purl.obolibrary.org/obo/xpo.owl" ; _:b262 ; ; ; . "The Xenopus phenotype ontology: bridging model organism phenotype data to human health and development." . _:b262 "Erik Segerdell" ; "Erik.Segerdell@cchmc.org" . "http://purl.obolibrary.org/obo/xpo.owl" . "http://purl.obolibrary.org/obo/xpo.obo" . _:b154 "obo2owl" ; "https://raw.githubusercontent.com/ybradford/zebrafish-experimental-conditions-ontology/master/zeco.obo"^^ . "Danio" . _:b155 "Yvonne Bradford" ; "ybradford@zfin.org" . "http://purl.obolibrary.org/obo/zeco.obo" . "http://purl.obolibrary.org/obo/zeco.owl" . "http://purl.obolibrary.org/obo/zeco.json" . "ZFA" ; "active" ; _:b263 ; ; "A structured controlled vocabulary of the anatomy and development of the Zebrafish" ; "Zebrafish anatomy and development ontology" ; ; ; "anatomy and development" ; "https://github.com/cerivs/zebrafish-anatomical-ontology/issues" ; "http://purl.obolibrary.org/obo/zfa.owl" ; _:b264 ; ; ; . _:b263 "obo2owl" ; "https://raw.githubusercontent.com/cerivs/zebrafish-anatomical-ontology/master/src/zebrafish_anatomy.obo"^^ . "The zebrafish anatomy and stage ontologies: representing the anatomy and development of Danio rerio." . _:b264 "Ceri Van Slyke" ; "van_slyke@zfin.org" . "http://purl.obolibrary.org/obo/zfa.owl" . "http://purl.obolibrary.org/obo/zfa.obo" . "ZFS" ; "active" ; _:b265 ; ; "Developmental stages of the Zebrafish" ; "Zebrafish developmental stages ontology" ; ; "anatomy and development" ; "https://github.com/cerivs/zebrafish-anatomical-ontology/issues" ; "http://purl.obolibrary.org/obo/zfs.owl" ; _:b266 ; ; ; ; . _:b265 "obo2owl" ; "https://raw.githubusercontent.com/obophenotype/developmental-stage-ontologies/master/src/zfs/zfs.obo"^^ . _:b266 "Ceri Van Slyke" ; "van_slyke@zfin.org" . "http://purl.obolibrary.org/obo/zfs.owl" . "http://purl.obolibrary.org/obo/zfs.obo" . "ZP" ; "active" ; ; ; ; ; ; ; ; "The Zebrafish Phenotype Ontology formally defines all phenotypes of the Zebrafish model organism." ; "Zebrafish Phenotype Ontology" ; ; "phenotype" ; "https://github.com/obophenotype/zebrafish-phenotype-ontology/issues" ; "http://purl.obolibrary.org/obo/zp.owl" ; _:b267 ; ; ; . _:b267 "Yvonne Bradford" ; "ybradford@zfin.org" . "http://purl.obolibrary.org/obo/zp.owl" . "http://purl.obolibrary.org/obo/zp.obo" . _:b201 "git clone https://github.com/Superraptor/GSSO.git" . "Apache 2.0 License" . _:b202 "Clair Kronk" ; "kronkcj@mail.uc.edu" . "http://purl.obolibrary.org/obo/gsso.owl" . "http://purl.obolibrary.org/obo/gsso.obo" . "http://purl.obolibrary.org/obo/gsso.json" . "hpo" . "The Human Phenotype Ontology: a tool for annotating and analyzing human hereditary disease." . "The Human Phenotype Ontology: Semantic Unification of Common and Rare Disease." . "The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data." . "Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources." . "JAX HPO Browser" ; "HPO" . "Monarch Phenotype Page" ; "Monarch" . _:b47 "Sebastian Koehler" ; "dr.sebastian.koehler@gmail.com" . "Simple, manually curated version of the ontology without the use of a reasoner, and without any imported terms, in obographs JSON format." ; "Official HPO release in obographs JSON format" ; "json" ; "http://purl.obolibrary.org/obo/hp.json" . "Simple, manually curated version of the ontology without the use of a reasoner, and without any imported terms, in OBO file format." ; "Official HPO release in OBO format" ; "obo" ; "http://purl.obolibrary.org/obo/hp.obo" . "Manually classified version of the ontology without the use of a reasoner, with imported terms, in OWL format (RDF/XML)." ; "Official HPO release in OWL" ; "owl" ; "http://purl.obolibrary.org/obo/hp.owl" . "Manually curated version of the ontology without the use of a reasoner, with references to imported terms, in obographs JSON file format." ; "HPO base release in obographs JSON format" ; "obo" ; "http://purl.obolibrary.org/obo/hp/hp-base.json" . "Manually curated version of the ontology without the use of a reasoner, with references to imported terms, in OBO file format." ; "HPO base release in OBO format" ; "obo" ; "http://purl.obolibrary.org/obo/hp/hp-base.obo" . "Manually curated version of the ontology without the use of a reasoner, with references to imported terms, in OWL (RDF/XML) file format." ; "HPO base release in OWL format" ; "owl" ; "http://purl.obolibrary.org/obo/hp/hp-base.owl" . "Version of the ontology automatically classified with the use of a reasoner, including all imported terms, in obographs JSON file format." ; "HPO full release in obographs JSON format" ; "json" ; "http://purl.obolibrary.org/obo/hp/hp-full.json" . "Version of the ontology automatically classified with the use of a reasoner, including all imported terms, in OBO file format." ; "HPO full release in OBO format" ; "obo" ; "http://purl.obolibrary.org/obo/hp/hp-full.obo" . "Version of the ontology automatically classified with the use of a reasoner, including all imported terms, in OWL (RDF/XML) file format." ; "HPO full release in OWL format" ; "owl" ; "http://purl.obolibrary.org/obo/hp/hp-full.owl" . "Version of the ontology corresponding to the primary release (hp.owl), with translated labels, synonyms, and definitions, in obographs JSON file format." ; "HPO International Edition in obographs JSON format" ; "json" ; "http://purl.obolibrary.org/obo/hp/hp-international.json" . "Version of the ontology corresponding to the primary release (hp.owl), with translated labels, synonyms, and definitions, in OBO file format." ; "HPO International Edition in OBO format" ; "obo" ; "http://purl.obolibrary.org/obo/hp/hp-international.obo" . "Version of the ontology corresponding to the primary release (hp.owl), with translated labels, synonyms, and definitions, in OWL (RDF/XML) file format." ; "HPO International Edition in OWL format" ; "owl" ; "http://purl.obolibrary.org/obo/hp/hp-international.owl" . "Simple, manually curated version of the ontology without the use of a reasoner, and without any imported terms, in obographs JSON file format." ; "HPO simple, manually classified, without imports in obographs JSON format" ; "json" ; "http://purl.obolibrary.org/obo/hp/hp-simple-non-classified.json" . "Simple, manually curated version of the ontology without the use of a reasoner, and without any imported terms, in OBO file format." ; "HPO simple, manually classified, without imports in OBO format" ; "obo" ; "http://purl.obolibrary.org/obo/hp/hp-simple-non-classified.obo" . "Simple, manually curated version of the ontology without the use of a reasoner, and without any imported terms, in OWL (RDF/XML) file format." ; "HPO simple, manually classified, without imports in OWL format" ; "owl" ; "http://purl.obolibrary.org/obo/hp/hp-simple-non-classified.owl" . "https://hpo.jax.org/app/data/annotations" ; "HPO Annotations (Phenotype to Disease)" ; "tsv" ; "http://purl.obolibrary.org/obo/hp/phenotype.hpoa" . "https://hpo.jax.org/app/data/annotations" ; "HPO phenotype to gene annotations" ; "tsv" ; "http://purl.obolibrary.org/obo/hp/phenotype_to_genes.txt" . "https://hpo.jax.org/app/data/annotations" ; "HPO gene to phenotype annotations" ; "tsv" ; "http://purl.obolibrary.org/obo/hp/genes_to_phenotype.txt" . "KISAO" ; "active" ; _:b268 ; "A classification of algorithms for simulating biology, their parameters, and their outputs" ; "Kinetic Simulation Algorithm Ontology" ; ; ; "simulation" ; ; ; "https://github.com/SED-ML/KiSAO/issues" ; ; ; ; "http://purl.obolibrary.org/obo/kisao.owl" ; _:b269 ; ; . _:b268 "owl2obo" ; "https://raw.githubusercontent.com/SED-ML/KiSAO/deploy/kisao.owl"^^ . "Artistic License 2.0" . "Controlled vocabularies and semantics in systems biology" . "NIH P41EB023912" . "NIH R35GM119771" . "Ontology Lookup Service" ; "OLS" . "BioPortal" ; "BioPortal" . "OntoBee" ; "OntoBee" . _:b269 "Jonathan Karr" ; "jonrkarr@gmail.com" . "http://purl.obolibrary.org/obo/kisao.owl" . _:b220 "obo2owl" ; "http://www.ebi.ac.uk/sbo/exports/Main/SBO_OBO.obo"^^ . _:b221 "Rahuman Sheriff" ; "sheriff@ebi.ac.uk" . "http://purl.obolibrary.org/obo/sbo.owl" . "SCDO" ; "active" ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; _:b270 ; "An ontology for the standardization of terminology and integration of knowledge about Sickle Cell Disease." ; "Sickle Cell Disease Ontology" ; ; ; ; ; "health" ; "https://github.com/scdodev/scdo-ontology/issues" ; "http://purl.obolibrary.org/obo/scdo.owl" ; _:b271 ; ; ; . "EUPATH" ; "inactive" ; "An ontology is developed to support Eukaryotic Pathogen, Host & Vector Genomics Resource (VEuPathDB; https://veupathdb.org)." ; "VEuPathDB ontology" ; ; ; "organisms" ; "https://github.com/VEuPathDB-ontology/VEuPathDB-ontology/issues" ; "http://purl.obolibrary.org/obo/eupath.owl" ; _:b272 ; ; . "inactive" ; _:b273 ; "A gazetteer constructed on ontological principles. The countries are actively maintained." ; "Gazetteer" ; ; "environment" ; "https://github.com/EnvironmentOntology/gaz/issues" ; "https://groups.google.com/forum/#!forum/obo-gazetteer" ; "http://purl.obolibrary.org/obo/gaz.owl" ; _:b274 ; ; ; ; . "inactive" ; "An application ontology to cover all aspects of malaria as well as the intervention attempts to control it." ; "Malaria Ontology" ; ; "health" ; "http://purl.obolibrary.org/obo/idomal.owl" ; _:b275 ; ; ; . _:b270 "git clone https://github.com/scdodev/scdo-ontology.git" . "GPL-3.0" . "The Sickle Cell Disease Ontology: recent development and expansion of the universal sickle cell knowledge representation." . "The Sickle Cell Disease Ontology: Enabling Collaborative Research and Co-Designing of New Planetary Health Applications." . "The Sickle Cell Disease Ontology: enabling universal sickle cell-based knowledge representation." . _:b271 "Jade Hotchkiss" ; "giant.plankton@gmail.com" . "http://purl.obolibrary.org/obo/scdo.owl" . "http://purl.obolibrary.org/obo/scdo.obo" . "orphaned" ; _:b276 ; "An ontology of physico-chemical methods and properties." ; "Physico-chemical methods and properties" ; "chemistry and biochemistry" ; "http://purl.obolibrary.org/obo/fix.owl" ; _:b277 ; ; ; . _:b276 "obo2owl" ; "ftp://ftp.ebi.ac.uk/pub/databases/chebi/ontology/fix.obo"^^ . _:b277 "chEBI" . "http://purl.obolibrary.org/obo/fix.owl" . "http://purl.obolibrary.org/obo/fix.obo" . "MAMO" ; "orphaned" ; _:b278 ; "The Mathematical Modelling Ontology (MAMO) is a classification of the types of mathematical models used mostly in the life sciences, their variables, relationships and other relevant features." ; "Mathematical modeling ontology" ; ; "simulation" ; "http://sourceforge.net/p/mamo-ontology/tickets/" ; "http://purl.obolibrary.org/obo/mamo.owl" ; ; . _:b278 "owl2obo" ; "https://svn.code.sf.net/p/mamo-ontology/code/tags/latest/mamo-xml.owl"^^ . "http://purl.obolibrary.org/obo/mamo.owl" . "orphaned" ; _:b279 ; "An ontology of physico-chemical processes, i.e. physico-chemical changes occurring in course of time." ; "Physico-chemical process" ; "chemistry and biochemistry" ; "http://purl.obolibrary.org/obo/rex.owl" ; . _:b279 "obo2owl" ; "http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/physicochemical/rex.obo"^^ . "http://purl.obolibrary.org/obo/rex.owl" . "SIBO" ; "orphaned" ; _:b280 ; "Social Behavior in insects" ; "Social Insect Behavior Ontology" ; ; "biological systems" ; "https://github.com/obophenotype/sibo/issues" ; "http://purl.obolibrary.org/obo/sibo.owl" ; _:b281 ; ; ; . _:b280 "git clone https://github.com/obophenotype/sibo.git" ; "vcs" . _:b281 "Chris Mungall" ; "cjmungall@lbl.gov" . "http://purl.obolibrary.org/obo/sibo.owl" . "http://purl.obolibrary.org/obo/sibo.obo" . "VariO" ; "orphaned" ; _:b282 ; "Variation Ontology, VariO, is an ontology for standardized, systematic description of effects, consequences and mechanisms of variations." ; "Variation Ontology" ; ; ; ; ; "biological systems" ; "http://variationontology.org/instructions.shtml" ; "http://purl.obolibrary.org/obo/vario.owl" ; _:b283 ; ; ; . _:b282 "obo2owl" ; "http://variationontology.org/vario_download/vario.obo"^^ . "Variation Ontology for annotation of variation effects and mechanisms" . "Variation ontology: annotator guide" . "Types and effects of protein variations" . _:b283 "Mauno Vihinen" ; "mauno.vihinen@med.lu.se" . "VariO main release in OWL" ; "http://purl.obolibrary.org/obo/vario.owl" . "VariO in OBO format" ; "http://purl.obolibrary.org/obo/vario.obo" . "Malaria study data integration and information retrieval based on OBO Foundry ontologies." . _:b272 "Jie Zheng" ; "jiezhen@med.umich.edu" . "http://purl.obolibrary.org/obo/eupath.owl" . "FBbi" ; "inactive" ; _:b284 ; "A structured controlled vocabulary of sample preparation, visualization and imaging methods used in biomedical research." ; "Biological Imaging Methods Ontology" ; ; "investigations" ; "https://github.com/CRBS/Biological_Imaging_Methods_Ontology/issues" ; "http://purl.obolibrary.org/obo/fbbi.owl" ; _:b285 ; ; . _:b284 "obo2owl" ; "https://raw.githubusercontent.com/dosumis/fbbi/master/src/ontology/fbbi.obo"^^ . _:b285 "Willy Wong" ; "wawong@gmail.com" . "http://purl.obolibrary.org/obo/fbbi.owl" . "MFMO" ; "inactive" ; ; ; "The Mammalian Feeding Muscle Ontology is an antomy ontology for the muscles of the head and neck that participate in feeding, swallowing, and other oral-pharyngeal behaviors." ; "Mammalian Feeding Muscle Ontology" ; ; "anatomy and development" ; "https://github.com/RDruzinsky/feedontology/issues" ; "http://purl.obolibrary.org/obo/mfmo.owl" ; _:b286 ; ; . _:b286 "Robert Druzinsky" ; "druzinsk@uic.edu" . "http://purl.obolibrary.org/obo/mfmo.owl" . _:b150 "Carrine Blank" ; "carrine.blank@umontana.edu" . "http://purl.obolibrary.org/obo/micro.owl" . "OGSF" ; "inactive" ; "An application ontology to represent genetic susceptibility to a specific disease, adverse event, or a pathological process." ; "Ontology of Genetic Susceptibility Factor" ; ; "investigations" ; "https://github.com/linikujp/OGSF/issues" ; "http://purl.obolibrary.org/obo/ogsf.owl" ; _:b287 ; ; . _:b287 "Asiyah Yu Lin" ; "linikujp@gmail.com" . "http://purl.obolibrary.org/obo/ogsf.owl" . "OlatDv" ; "inactive" ; _:b288 ; "Life cycle stages for Medaka" ; "Medaka Developmental Stages" ; ; "anatomy and development" ; "https://github.com/obophenotype/developmental-stage-ontologies/issues" ; "http://purl.obolibrary.org/obo/olatdv.owl" ; _:b289 ; ; ; ; . _:b288 "obo2owl" ; "https://raw.githubusercontent.com/obophenotype/developmental-stage-ontologies/master/src/olatdv/olatdv.obo"^^ . _:b289 "Frédéric Bastian" ; "frederic.bastian@unil.ch" . "http://purl.obolibrary.org/obo/olatdv.obo" . "http://purl.obolibrary.org/obo/olatdv.owl" . "PdumDv" ; "inactive" ; _:b290 ; "Life cycle stages for Platynereis dumerilii" ; "Platynereis Developmental Stages" ; ; "anatomy and development" ; "https://github.com/obophenotype/developmental-stage-ontologies/issues" ; "http://purl.obolibrary.org/obo/pdumdv.owl" ; _:b291 ; ; ; ; . _:b290 "obo2owl" ; "https://raw.githubusercontent.com/obophenotype/developmental-stage-ontologies/master/src/pdumdv/pdumdv.obo"^^ . _:b291 "Frédéric Bastian" ; "frederic.bastian@unil.ch" . "http://purl.obolibrary.org/obo/pdumdv.owl" . "http://purl.obolibrary.org/obo/pdumdv.obo" . "AEO" ; "inactive" ; _:b292 ; "AEO is an ontology of anatomical structures that expands CARO, the Common Anatomy Reference Ontology" ; "Anatomical Entity Ontology" ; ; "anatomy and development" ; "https://github.com/obophenotype/human-developmental-anatomy-ontology/issues" ; "http://purl.obolibrary.org/obo/aeo.owl" ; _:b293 ; ; . _:b292 "git clone https://github.com/obophenotype/human-developmental-anatomy-ontology.git" ; "vcs" . _:b293 "Jonathan Bard" ; "J.Bard@ed.ac.uk" . "http://purl.obolibrary.org/obo/aeo.owl" . "inactive" ; ; "An anatomical and developmental ontology for cephalopods" ; "Cephalopod Ontology" ; ; "anatomy and development" ; "https://github.com/obophenotype/cephalopod-ontology/issues" ; "http://purl.obolibrary.org/obo/ceph.owl" ; _:b294 ; ; ; . "Cephalopod" . _:b294 "Chris Mungall" ; "cjmungall@lbl.gov" . "main version" ; "http://purl.obolibrary.org/obo/ceph.owl" . "oboformat edition" ; "http://purl.obolibrary.org/obo/ceph.obo" . "inactive" ; ; ; ; _:b295 ; ; "A structured controlled vocabulary of stage-specific anatomical structures of the developing human." ; "Human developmental anatomy, abstract" ; ; ; "anatomy and development" ; "https://github.com/obophenotype/human-developmental-anatomy-ontology/issues" ; "http://purl.obolibrary.org/obo/ehdaa2.owl" ; _:b296 ; ; ; . _:b295 "git clone https://github.com/obophenotype/human-developmental-anatomy-ontology.git" ; "vcs" . "A new ontology (structured hierarchy) of human developmental anatomy for the first 7 weeks (Carnegie stages 1-20)." . _:b296 "Jonathan Bard" ; "J.Bard@ed.ac.uk" . "http://purl.obolibrary.org/obo/ehdaa2.owl" . "http://purl.obolibrary.org/obo/ehdaa2.obo" . "FMA" ; "inactive" ; _:b297 ; ; "This is currently a slimmed down version of FMA" ; "Foundational Model of Anatomy Ontology (subset)" ; ; ; ; ; "anatomy and development" ; "https://bitbucket.org/uwsig/fma/issues" ; "http://purl.obolibrary.org/obo/fma.owl" ; _:b298 ; ; ; . _:b297 "obo2owl" ; "http://svn.code.sf.net/p/obo/svn/fma-conversion/trunk/fma2_obo.obo"^^ . "Translating the Foundational Model of Anatomy into OWL" . "The foundational model of anatomy in OWL: Experience and perspectives" . "Challenges in converting frame-based ontology into OWL: the Foundational Model of Anatomy case-study" . _:b298 "Onard Mejino" ; "mejino@u.washington.edu" . "http://purl.obolibrary.org/obo/fma.owl" . _:b273 "archive" ; "http://build.berkeleybop.org/job/build-gaz/lastSuccessfulBuild/artifact/*zip*/archive.zip"^^ . _:b274 "Lynn Schriml" ; "lschriml@som.umaryland.edu" . "http://purl.obolibrary.org/obo/gaz.owl" . "http://purl.obolibrary.org/obo/gaz.obo" . "A country specific subset of the GAZ." ; "GAZ countries" ; "http://purl.obolibrary.org/obo/gaz/gaz-countries.owl" . _:b275 "Pantelis Topalis" ; "topalis@imbb.forth.gr" . "http://purl.obolibrary.org/obo/idomal.owl" . "http://purl.obolibrary.org/obo/idomal.obo" . "inactive" ; ; "Application ontology for entities related to insecticide resistance in mosquitos" ; "Mosquito insecticide resistance" ; "environment" ; "http://purl.obolibrary.org/obo/miro.owl" ; _:b299 ; ; . "Anopheles" . _:b299 "Christos (Kitsos) Louis" ; "louis@imbb.forth.gr" . "http://purl.obolibrary.org/obo/miro.owl" . "http://purl.obolibrary.org/obo/miro.obo" . "inactive" ; _:b300 ; "Controlled vocabulary pertaining to RNA function and based on RNA sequences, secondary and three-dimensional structures." ; "RNA ontology" ; ; "chemistry and biochemistry" ; "https://github.com/BGSU-RNA/rnao/issues" ; ; "http://purl.obolibrary.org/obo/rnao.owl" ; _:b301 ; ; ; . _:b300 "git clone https://github.com/BGSU-RNA/rnao.git" ; "vcs" . "RNA Ontology jOWL Browser" ; "RNAO" . _:b301 "Colin Batchelor" ; "BatchelorC@rsc.org" . "http://purl.obolibrary.org/obo/rnao.owl" . "http://purl.obolibrary.org/obo/rnao.obo" . "inactive" ; ; "The anatomy of the Tick, Families: Ixodidae, Argassidae" ; "Tick Anatomy Ontology" ; ; "anatomy and development" ; "http://purl.obolibrary.org/obo/tads.owl" ; _:b302 ; ; ; . "Ixodidae" . _:b302 "Daniel Sonenshine" ; "dsonensh@odu.edu" . "http://purl.obolibrary.org/obo/tads.owl" . "http://purl.obolibrary.org/obo/tads.obo" . "inactive" ; ; "A structured controlled vocabulary of the anatomy of mosquitoes." ; "Mosquito gross anatomy ontology" ; ; "anatomy and development" ; "http://purl.obolibrary.org/obo/tgma.owl" ; _:b303 ; ; ; . _:b303 "Pantelis Topalis" ; "topalis@imbb.forth.gr" . "http://purl.obolibrary.org/obo/tgma.owl" . "http://purl.obolibrary.org/obo/tgma.obo" . "inactive" ; ; "A manually curated resource for the representation and annotation of metabolic pathways" ; "Unipathway" ; ; ; "biological systems" ; "https://github.com/geneontology/unipathway/issues" ; "http://purl.obolibrary.org/obo/upa.owl" ; _:b304 ; ; ; . "UniPathway: a resource for the exploration and annotation of metabolic pathways" . _:b304 "Anne Morgat" ; "Anne.Morgat@sib.swiss" . "http://purl.obolibrary.org/obo/upa.owl" . "http://purl.obolibrary.org/obo/upa.obo" . "inactive" ; ; "Amphibian gross anatomy" ; "anatomy and development" ; _:b305 ; . "Amphibia" . _:b305 "David Blackburn" ; "david.c.blackburn@gmail.com" . "inactive" ; "Animal natural history and life history" ; "organisms" ; _:b306 ; . _:b306 "Animal Diversity Web technical staff" ; "adw_geeks@umich.edu" . "inactive" ; _:b307 ; "The Adverse Event Reporting Ontology (AERO) is an ontology aimed at supporting clinicians at the time of data entry, increasing quality and accuracy of reported adverse events" ; "Adverse Event Reporting Ontology" ; ; "health" ; _:b308 ; ; . _:b307 "owl2obo" ; "http://purl.obolibrary.org/obo/aero.owl"^^ . _:b308 "Melanie Courtot" ; "mcourtot@gmail.com" . "http://purl.obolibrary.org/obo/aero.owl" . "inactive" ; ; "Amphibian taxonomy" ; "organisms" ; _:b309 ; . _:b309 "David Blackburn" ; "david.c.blackburn@gmail.com" . "inactive" ; "An application ontology built for beta cell genomics studies." ; "Beta Cell Genomics Ontology" ; ; "anatomy and development" ; "https://github.com/obi-bcgo/bcgo/issues" ; _:b310 ; ; . _:b310 "Jie Zheng" ; "jiezheng@pennmedicine.upenn.edu" . "http://purl.obolibrary.org/obo/bcgo.owl" . "inactive" ; _:b311 ; ; "Bilateria anatomy" ; "anatomy and development" ; _:b312 ; ; . _:b311 "obo2owl" ; "http://4dx.embl.de/4DXpress_4d/edocs/bilateria_mrca.obo"^^ . "Bilateria" . _:b312 "Thorsten Henrich" ; "henrich@embl.de" . "http://purl.obolibrary.org/obo/bila.owl" . "inactive" ; "Gene Regulation Ontology" ; "chemistry and biochemistry" ; _:b313 ; . _:b313 "Vivian Lee" ; "vlee@ebi.ac.uk" . "inactive" ; "CranioMaxilloFacial ontology" ; "health" ; _:b314 ; . _:b314 "Mark Engelstad" ; "engelsta@ohsu.edu" . "inactive" ; ; "Dendritic cell" ; "anatomy and development" ; _:b315 ; . _:b315 "Lindsay Cowell" ; "Lindsay.Cowell@utsouthwestern.edu" . "inactive" ; "A formal represention for drug-drug interactions knowledge." ; "The Drug-Drug Interactions Ontology" ; ; ; "health" ; "https://github.com/labda/DINTO/issues" ; _:b316 ; ; . "DINTO: Using OWL Ontologies and SWRL Rules to Infer Drug–Drug Interactions and Their Mechanisms." . _:b316 "Maria Herrero" ; "maria.herrero@kcl.ac.uk" . "http://purl.obolibrary.org/obo/dinto.owl" . "inactive" ; ; "Human developmental anatomy, timed version" ; "anatomy and development" ; _:b317 ; . _:b317 "Jonathan Bard" ; "J.Bard@ed.ac.uk" . "inactive" ; ; "Human developmental anatomy, abstract version" ; "anatomy and development" ; _:b318 . _:b318 "Jonathan Bard" ; "J.Bard@ed.ac.uk" . "inactive" ; _:b319 ; ; "A structured controlled vocabulary of stage-specific anatomical structures of the mouse (Mus)." ; "Mouse gross anatomy and development, timed" ; "anatomy and development" ; _:b320 ; ; ; . _:b319 "obo2owl" ; "ftp://ftp.hgu.mrc.ac.uk/pub/MouseAtlas/Anatomy/EMAP_combined.obo"^^ . _:b320 "Terry Hayamizu" ; "Terry.Hayamizu@jax.org" . "http://purl.obolibrary.org/obo/emap.owl" . _:b111 "obo2owl" ; "https://github.com/Planteome/plant-environment-ontology/blob/master/plant-environment-ontology.obo.owl"^^ . "Ontologies as integrative tools for plant science." . _:b112 "Pankaj Jaiswal" ; "jaiswalp@science.oregonstate.edu" . "http://purl.obolibrary.org/obo/eo.owl" . "http://purl.obolibrary.org/obo/eo.obo" . "inactive" ; _:b321 ; "An ontology designed to support the semantic annotation of epidemiology resources" ; "Epidemiology Ontology" ; "health" ; ; . _:b321 "owl2obo" ; "http://purl.obolibrary.org/obo/epo.owl"^^ . "http://purl.obolibrary.org/obo/epo.owl" . "inactive" ; _:b322 ; "An ontology of research resources such as instruments. protocols, reagents, animal models and biospecimens." ; "eagle-i resource ontology" ; ; "information" ; _:b323 ; ; . _:b322 "owl2obo" ; "http://purl.obolibrary.org/obo/ero.owl"^^ . _:b323 "Marc Ciriello" ; "Marc_Ciriello@hms.harvard.edu" . "http://purl.obolibrary.org/obo/ero.owl" . "inactive" ; "eVOC (Expressed Sequence Annotation for Humans)" ; "anatomy and development" ; _:b324 . _:b324 "eVOC mailing list" ; "evoc@sanbi.ac.za" . "inactive" ; _:b325 ; ; "The taxonomy of the family Drosophilidae (largely after Baechli) and of other taxa referred to in FlyBase." ; "Fly taxonomy" ; "organisms" ; _:b326 ; ; . _:b325 "obo2owl" ; "http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/taxonomy/fly_taxonomy.obo"^^ . _:b326 "Clare Pilgrim" ; "cp390@cam.ac.uk" . "http://purl.obolibrary.org/obo/fbsp.owl" . "inactive" ; _:b327 ; "Influenza Ontology" ; "health" ; "http://purl.obolibrary.org/obo/flu/tracker" ; _:b328 ; ; . _:b327 "owl2obo" ; "http://purl.obolibrary.org/obo/flu.owl"^^ . _:b328 "Burke Squires" ; "burkesquires@gmail.com" . "http://purl.obolibrary.org/obo/flu.owl" . "inactive" ; "Cereal Plant Gross Anatomy" ; "anatomy and development" ; _:b329 ; . _:b329 "Plant Ontology Administrators" ; "po-discuss@plantontology.org" . "inactive" ; "Habronattus courtship" ; "organisms" ; _:b330 ; . _:b330 "Peter Midford" ; "peteremidford@yahoo.com" . "inactive" ; _:b331 ; "Event (INOH pathway ontology)" ; "chemistry and biochemistry" ; . _:b331 "obo2owl" ; "http://download.baderlab.org/INOH/ontologies/EventOntology_172.obo"^^ . "inactive" ; _:b332 ; "Molecule role (INOH Protein name/family name ontology)" ; "chemistry and biochemistry" ; _:b333 ; . _:b332 "obo2owl" ; "https://web.archive.org/web/20131127090937/http://www.inoh.org/ontologies/MoleculeRoleOntology.obo"^^ . _:b333 "INOH curators" ; "curator@inoh.org" . "inactive" ; "Protein Domains" ; "chemistry and biochemistry" ; _:b334 ; . _:b334 "InterPro Help" ; "interhelp@ebi.ac.uk" . "inactive" ; _:b335 ; "An ontology representation of the LIPIDMAPS nomenclature classification." ; "Lipid Ontology" ; "chemistry and biochemistry" ; _:b336 . _:b335 "owl2obo" ; "http://www.lipidprofiles.com/LipidOntology"^^ . _:b336 "Christopher Baker" ; "bakerc@unb.ca" . "inactive" ; "Loggerhead nesting" ; "organisms" ; _:b337 ; . _:b337 "Peter Midford" ; "peteremidford@yahoo.com" . "inactive" ; "Multiple alignment" ; "chemistry and biochemistry" ; _:b338 ; . _:b338 "Julie Thompson" ; "julie@igbmc.u-strasbg.fr" . "inactive" ; "Minimal anatomical terminology" ; "anatomy and development" ; _:b339 . _:b339 "Jonathan Bard" ; "j.bard@ed.ac.uk" . "inactive" ; ; "A structured controlled vocabulary of the anatomy and development of the Japanese medaka fish, Oryzias latipes." ; "Medaka fish anatomy and development" ; "anatomy and development" ; _:b340 ; . "Oryzias" . _:b340 "Thorsten Henrich" ; "henrich@embl.de" . "http://purl.obolibrary.org/obo/mfo.owl" . "inactive" ; "An application ontology for use with miRNA databases." ; "microRNA Ontology" ; ; "chemistry and biochemistry" ; _:b341 ; ; . _:b341 "Pantelis Topalis" ; "topalis@imbb.forth.gr" . "http://purl.obolibrary.org/obo/mirnao.owl" . "inactive" ; "A standardized description of a microarray experiment in support of MAGE v.1." ; "Microarray experimental conditions" ; "investigations" ; _:b342 ; ; ; . _:b342 "Chris Stoeckert" ; "stoeckrt@pcbi.upenn.edu" . "http://purl.obolibrary.org/obo/mo.owl" . "inactive" ; "Neuronal cell types" ; "NIF Cell" ; "anatomy and development" ; _:b343 ; . _:b343 "Fahim Imam" ; "smtifahim@gmail.com" . "inactive" ; "NIF Dysfunction" ; "health" ; _:b344 ; . _:b344 "Fahim Imam" ; "smtifahim@gmail.com" . "inactive" ; "NIF Gross Anatomy" ; "anatomy and development" ; _:b345 ; . _:b345 "Fahim Imam" ; "smtifahim@gmail.com" . "inactive" ; _:b346 ; "Descriptors relevant to the experimental conditions of the Nuclear Magnetic Resonance (NMR) component in a metabolomics investigation." ; "NMR-instrument specific component of metabolomics investigations" ; "investigations" ; _:b347 ; ; ; . _:b346 "owl2obo" ; "https://msi-workgroups.svn.sourceforge.net/svnroot/msi-workgroups/ontology/NMR.owl"^^ . _:b347 "Schober Daniel" ; "schober@imbi.uni-freiburg.de" . "http://purl.obolibrary.org/obo/nmr.owl" . "inactive" ; "OBO relationship types (legacy)" ; "upper" ; _:b348 ; . _:b348 "Chris Mungall" ; "cjmungall@lbl.gov" . "inactive" ; "An ontology that formalizes the genomic element by defining an upper class genetic interval" ; "Ontology for genetic interval" ; "chemistry and biochemistry" ; "https://code.google.com/p/ontology-for-genetic-interval/issues/list" ; _:b349 ; ; . _:b349 "Asiyah Yu Lin" ; "linikujp@gmail.com" . "http://purl.obolibrary.org/obo/ogi.owl" . _:b142 "Mathias Brochhausen" ; "mbrochhausen@gmail.com" . "http://purl.obolibrary.org/obo/omiabis.owl" . "inactive" ; ; "Plant Anatomy Ontology" ; "anatomy and development" ; _:b350 ; . _:b350 "Pankaj Jaiswal" ; "jaiswalp@science.oregonstate.edu" . "inactive" ; ; "Platynereis stage ontology" ; "anatomy and development" ; _:b351 ; . "Platynereis" . _:b351 "Thorsten Henrich" ; "henrich@embl.de" . "inactive" ; ; "Plant Growth and Development Stage" ; "anatomy and development" ; _:b352 ; . _:b352 "Plant Ontology Administrators" ; "po-discuss@plantontology.org" . "inactive" ; "Plasmodium life cycle" ; "anatomy and development" ; _:b353 ; . _:b353 "Matt Berriman" ; "mb4@sanger.ac.uk" . "inactive" ; "Proteomics data and process provenance" ; "chemistry and biochemistry" ; _:b354 ; . _:b354 "Satya S. Sahoo" ; "satya30@uga.edu" . "inactive" ; "For the description of covalent bonds in proteins." ; "Protein covalent bond" ; "chemistry and biochemistry" ; _:b355 ; . _:b355 "John Garavelli" ; "john.garavelli@ebi.ac.uk" . "inactive" ; ; "Subcellular anatomy ontology" ; "anatomy and development" ; _:b356 ; . _:b356 "Stephen Larson" ; "slarson@ncmir.ucsd.edu" . "inactive" ; _:b357 ; "A structured controlled vocabulary for the annotation of sample processing and separation techniques in scientific experiments." ; "Sample processing and separation techniques" ; "investigations" ; _:b358 ; ; ; . _:b357 "obo2owl" ; "https://raw.githubusercontent.com/HUPO-PSI/gelml/master/CV/sep.obo"^^ . _:b358 "SEP developers via the PSI and MSI mailing lists" ; "psidev-gps-dev@lists.sourceforge.net" . "http://purl.obolibrary.org/obo/sep.owl" . "inactive" ; ; "Suggested Ontology for Pharmacogenomics" ; "chemistry and biochemistry" ; _:b359 ; . _:b359 "Adrien Coulet" ; "Adrien.Coulet@loria.fr" . "inactive" ; ; "Terminology of Anatomy of Human Embryology" ; "anatomy and development" ; _:b360 . _:b360 "Pierre Sprumont" ; "pierre.sprumont@unifr.ch" . "inactive" ; ; "Terminology of Anatomy of Human Histology" ; "health" ; _:b361 . _:b361 "Pierre Sprumont" ; "pierre.sprumont@unifr.ch" . "inactive" ; _:b362 ; ; "Multispecies fish anatomy ontology. Originally seeded from ZFA, but intended to cover terms relevant to other taxa" ; "Teleost Anatomy Ontology" ; ; ; "anatomy and development" ; _:b363 ; ; . _:b362 "obo2owl" ; "http://purl.obolibrary.org/obo/tao.obo"^^ . "The teleost anatomy ontology: anatomical representation for the genomics age" . _:b363 "Wasila Dahdul" ; "wasila.dahdul@usd.edu" . "http://purl.obolibrary.org/obo/tao.owl" . "inactive" ; "Vertebrate Homologous Ontology Group Ontology" ; "anatomy and development" ; . "http://purl.obolibrary.org/obo/vhog.owl" . "inactive" ; _:b364 ; ; "Vertebrate skeletal anatomy ontology." ; "Vertebrate Skeletal Anatomy Ontology-" ; "anatomy and development" ; _:b365 ; ; ; . _:b364 "obo2owl" ; "http://phenoscape.svn.sourceforge.net/svnroot/phenoscape/tags/vocab-releases/VSAO/vsao.obo"^^ . "Vertebrata" . _:b365 "Wasila Dahdul" ; "wasila.dahdul@usd.edu" . "http://purl.obolibrary.org/obo/vsao.owl" . "inactive" ; ; "Yeast phenotypes" ; "phenotype" ; _:b366 ; . "Saccharomyces cerevisiae" . _:b366 "Mike Cherry" ; "cherry@genome.stanford.edu" . "inactive" ; ; "Maize gross anatomy" ; "anatomy and development" ; _:b367 ; . "Zea" . _:b367 "Leszek Vincent" ; "Leszek@missouri.edu" .