oboscore:
  dashboard_score_max_impact:
    dashboard: 1
    impact: 1
    impact_external: 3
    no_base: 5
    overall_error: 20
    overall_info: 5
    overall_warning: 10
    report_errors: 10
    report_info: 3
    report_warning: 5
    reuse: 1
  dashboard_score_weights:
    dashboard: 1
    impact: 1
    impact_external: 3
    no_base: 5
    overall_error: 5
    overall_info: 0.1
    overall_warning: 0.5
    report_errors: 0.05
    report_info: 0.005
    report_warning: 0.01
    reuse: 1
ontologies:
- base_generated: true
  base_prefixes:
  - BMO
  - BMOALT
  changed: true
  date: 2024-09-09 13:20:26.755394
  metrics:
    'Axioms: Breakdown of axiom types':
      AnnotationAssertion: 7694
      Declaration: 697
      DisjointClasses: 19
      EquivalentClasses: 7
      SubAnnotationPropertyOf: 11
      SubClassOf: 772
      TransitiveObjectProperty: 1
    'Axioms: Number of axioms': 9201
    'Entities: % of entities reused': 100.0
    'Entities: Number of annotation properties': 149
    'Entities: Number of classes': 542
    'Entities: Number of data properties': 0
    'Entities: Number of individuals': 0
    'Entities: Number of object properties': 8
    'Entities: Number of unsatisfiable classes': 0
    'Info: Breakdown of OWL class expressions used':
      Class: 2137
      ObjectSomeValuesFrom: 244
    'Info: Does the ontology fall under OWL 2 DL?': false
    'Info: Experimental OBO score':
      _dashboard: 0.733
      _formula: (1*impact+1*dashboard)/2
      _impact: 0.0
      _impact_external: 0
      _reuse: 1.0
      oboscore: 0.366
    'Info: How many externally documented uses?': 0
    'Info: How many ontologies use it?': 0
    'Info: Logical consistency': true
    'Info: Syntax': RDF/XML Syntax
    'Info: Usage of namespaces in axioms':
      BFO: 259
      CARO: 2
      CHEBI: 79
      CHMO: 5
      CL: 21
      CMO: 29
      CTO: 3
      DOID: 408
      GO: 28
      GSSO: 10
      HP: 12
      IAO: 2097
      ICO: 8
      IDO: 2
      MAXO: 29
      MMO: 2
      MONDO: 47
      MP: 4
      MPATH: 2
      NCIT: 656
      OAE: 3
      OBCS: 6
      OBI: 97
      OGG: 11
      OGMS: 21
      OMIT: 71
      OMO: 4
      ONS: 2
      OPMI: 75
      PATO: 19
      PR: 99
      RO: 34
      SCDO: 47
      SO: 6
      STATO: 6
      SYMP: 12
      UBERON: 61
      dc: 35
      dc11: 40
      foaf: 4
      obo: 936
      oboInOwl: 3685
      owl: 2
      prefix_unknown: 374
      rdf: 127
      rdfs: 894
      skos: 133
    'Info: Which ontologies use it?': []
  mirror_from: https://raw.githubusercontent.com/Astghik-S/BMO/main/BMO-merged.owl
  namespace: bmo
  results:
    FP01 Open:
      status: PASS
    FP02 Common Format:
      status: PASS
    FP03 URIs:
      status: PASS
    FP04 Versioning:
      comment: Version IRI does not resolve
      status: ERROR
    FP05 Scope:
      status: PASS
    FP06 Textual Definitions:
      status: PASS
    FP07 Relations:
      status: PASS
    FP08 Documented:
      status: PASS
    FP09 Plurality of Users:
      comment: Missing usages
      status: ERROR
    FP11 Locus of Authority:
      comment: Invalid contact information
      status: ERROR
    FP12 Naming Conventions:
      status: PASS
    FP16 Maintenance:
      status: PASS
    FP20 Responsiveness:
      status: PASS
    ROBOT Report:
      status: PASS
  sha256_hash: c4c0f8f7a522e7838234703e64540582004e7bd5729834c97563ed31233717c1
  summary:
    comment: 3 errors
    status: ERROR
    summary_count:
      ERROR: 3
      INFO: 0
      WARN: 0
  version: http://purl.obolibrary.org/obo/bmo/releases/2024-05-26/bmo.owl
- base_generated: true
  base_prefixes:
  - EXMO
  - EXMOALT
  changed: true
  date: 2024-09-09 13:20:38.605953
  metrics:
    'Axioms: Breakdown of axiom types':
      AnnotationAssertion: 6370
      AnnotationPropertyRangeOf: 1
      AsymmetricObjectProperty: 2
      DataPropertyRange: 1
      Declaration: 1277
      DifferentIndividuals: 1
      DisjointClasses: 32
      DisjointObjectProperties: 10
      EquivalentClasses: 27
      FunctionalObjectProperty: 3
      InverseFunctionalObjectProperty: 1
      InverseObjectProperties: 115
      IrrefexiveObjectProperty: 8
      ObjectPropertyDomain: 112
      ObjectPropertyRange: 120
      Rule: 31
      SubAnnotationPropertyOf: 75
      SubClassOf: 564
      SubObjectPropertyOf: 706
      SubPropertyChainOf: 145
      SymmetricObjectProperty: 86
      TransitiveObjectProperty: 45
    'Axioms: Number of axioms': 9732
    'Entities: % of entities reused': 100.0
    'Entities: Number of annotation properties': 151
    'Entities: Number of classes': 434
    'Entities: Number of data properties': 1
    'Entities: Number of individuals': 35
    'Entities: Number of object properties': 658
    'Entities: Number of unsatisfiable classes': 0
    'Info: Breakdown of OWL class expressions used':
      Class: 1949
      ObjectAllValuesFrom: 34
      ObjectComplementOf: 2
      ObjectIntersectionOf: 29
      ObjectSomeValuesFrom: 125
      ObjectUnionOf: 15
    'Info: Does the ontology fall under OWL 2 DL?': true
    'Info: Experimental OBO score':
      _dashboard: 0.733
      _formula: (1*impact+1*dashboard)/2
      _impact: 0.0
      _impact_external: 0
      _reuse: 1.0
      oboscore: 0.366
    'Info: How many externally documented uses?': 0
    'Info: How many ontologies use it?': 0
    'Info: Logical consistency': true
    'Info: Syntax': RDF/XML Syntax
    'Info: Usage of namespaces in axioms':
      BFO: 660
      DOID: 10
      ENVO: 1
      HsapDv: 62
      IAO: 2808
      OBI: 21
      OMO: 4
      RO: 3392
      UBERON: 64
      dc: 318
      dc11: 18
      foaf: 2
      obo: 1503
      oboInOwl: 2158
      owl: 2
      prefix_unknown: 68
      rdf: 434
      rdfs: 1691
      skos: 5
      xsd: 143
    'Info: Which ontologies use it?': []
  mirror_from: https://raw.githubusercontent.com/DarkKnight0-0/exmo/master/exmo.owl
  namespace: exmo
  results:
    FP01 Open:
      comment: Ontology license 'exercise medicine ontology is licensed under cc by
        4.0 (https://creativecommons.org/licenses/by/4.0/).' does not match registry
        license 'https://creativecommons.org/licenses/by/4.0/'.
      status: ERROR
    FP02 Common Format:
      status: PASS
    FP03 URIs:
      status: PASS
    FP04 Versioning:
      comment: Version IRI does not resolve
      status: ERROR
    FP05 Scope:
      status: PASS
    FP06 Textual Definitions:
      status: PASS
    FP07 Relations:
      status: PASS
    FP08 Documented:
      status: PASS
    FP09 Plurality of Users:
      comment: Missing usages
      status: ERROR
    FP11 Locus of Authority:
      status: PASS
    FP12 Naming Conventions:
      status: PASS
    FP16 Maintenance:
      status: PASS
    FP20 Responsiveness:
      status: PASS
    ROBOT Report:
      status: PASS
  sha256_hash: 8195fb794788a150dd3fdc732a362631cfbbcbf835539d5db28cebb4be847b64
  summary:
    comment: 3 errors
    status: ERROR
    summary_count:
      ERROR: 3
      INFO: 0
      WARN: 0
  version: http://purl.obolibrary.org/obo/exmo/2024-07-10/exmo.owl
- base_generated: true
  base_prefixes:
  - PBPKO
  - PBPKOALT
  changed: true
  date: 2024-09-09 13:20:33.548162
  metrics:
    'Axioms: Breakdown of axiom types':
      AnnotationAssertion: 2338
      Declaration: 582
      SubClassOf: 558
    'Axioms: Number of axioms': 3478
    'Entities: % of entities reused': 100.0
    'Entities: Number of annotation properties': 19
    'Entities: Number of classes': 565
    'Entities: Number of data properties': 0
    'Entities: Number of individuals': 0
    'Entities: Number of object properties': 0
    'Entities: Number of unsatisfiable classes': 0
    'Info: Breakdown of OWL class expressions used':
      Class: 1681
    'Info: Does the ontology fall under OWL 2 DL?': true
    'Info: Experimental OBO score':
      _dashboard: 0.6
      _formula: (1*impact+1*dashboard)/2
      _impact: 0.0
      _impact_external: 0
      _reuse: 1.0
      oboscore: 0.3
    'Info: How many externally documented uses?': 0
    'Info: How many ontologies use it?': 0
    'Info: Logical consistency': true
    'Info: Syntax': RDF/XML Syntax
    'Info: Usage of namespaces in axioms':
      GO: 9
      IAO: 1818
      OBCS: 10
      UBERON: 40
      dc: 6
      foaf: 15
      obo: 1727
      rdf: 258
      rdfs: 567
      skos: 102
      xsd: 1
    'Info: Which ontologies use it?': []
  mirror_from: https://raw.githubusercontent.com/Crispae/pbpko/main/Robot/ontologies/pbpko.owl
  namespace: pbpko
  results:
    FP01 Open:
      status: PASS
    FP02 Common Format:
      status: PASS
    FP03 URIs:
      comment: 0 invalid IRIs. The Ontology IRI is not valid.
      file: fp3
      status: ERROR
    FP04 Versioning:
      comment: Version IRI does not resolve
      status: ERROR
    FP05 Scope:
      status: PASS
    FP06 Textual Definitions:
      comment: 6 duplicate definitions.  20 missing definitions. See ROBOT Report
        for details.
      status: ERROR
    FP07 Relations:
      status: PASS
    FP08 Documented:
      status: PASS
    FP09 Plurality of Users:
      comment: Missing usages
      status: ERROR
    FP11 Locus of Authority:
      status: PASS
    FP12 Naming Conventions:
      status: PASS
    FP16 Maintenance:
      status: PASS
    FP20 Responsiveness:
      status: PASS
    ROBOT Report:
      comment: 8 errors, 47 warnings, 12 info messages.
      file: robot_report
      results:
        ERROR: 8
        INFO: 12
        WARN: 47
      status: ERROR
  sha256_hash: 15c34bb5dc0760071f458d5d52da5e54d0783966a0adfc7e2c546937436ff1ef
  summary:
    comment: 5 errors
    status: ERROR
    summary_count:
      ERROR: 5
      INFO: 0
      WARN: 0
  version: http://purl.obolibrary.org/obo/pbpko/releases/2024-08-11/pbpko.owl
- base_generated: true
  base_prefixes:
  - TMP
  - TMPALT
  changed: true
  date: 2024-09-09 13:20:20.579249
  metrics:
    'Axioms: Breakdown of axiom types':
      AnnotationAssertion: 2
      Declaration: 2
      EquivalentClasses: 1
    'Axioms: Number of axioms': 5
    'Entities: % of entities reused': 100.0
    'Entities: Number of annotation properties': 1
    'Entities: Number of classes': 2
    'Entities: Number of data properties': 0
    'Entities: Number of individuals': 0
    'Entities: Number of object properties': 1
    'Entities: Number of unsatisfiable classes': 0
    'Info: Breakdown of OWL class expressions used':
      Class: 3
      ObjectSomeValuesFrom: 1
    'Info: Does the ontology fall under OWL 2 DL?': true
    'Info: Experimental OBO score':
      _dashboard: 0.282
      _formula: (1*impact+1*dashboard)/2
      _impact: 0.0
      _impact_external: 0
      _reuse: 1.0
      oboscore: 0.141
    'Info: How many externally documented uses?': 0
    'Info: How many ontologies use it?': 0
    'Info: Logical consistency': true
    'Info: Syntax': RDF/XML Syntax
    'Info: Usage of namespaces in axioms':
      obo: 4
      owl: 1
      rdfs: 2
    'Info: Which ontologies use it?': []
  mirror_from: https://raw.githubusercontent.com/monarch-ebi-dev/robot_tests/master/custom-dashboard.owl
  namespace: tmp
  results:
    FP01 Open:
      comment: Missing ontology license. Missing registry license.
      status: ERROR
    FP02 Common Format:
      status: PASS
    FP03 URIs:
      comment: 0 invalid IRIs. The Ontology IRI is not valid.
      file: fp3
      status: ERROR
    FP04 Versioning:
      comment: Missing version IRI
      status: ERROR
    FP05 Scope:
      comment: Missing domain (scope)
      status: ERROR
    FP06 Textual Definitions:
      comment: 2 missing definitions. See ROBOT Report for details.
      status: WARN
    FP07 Relations:
      comment: 1 non-RO properties used.
      file: fp7
      status: INFO
    FP08 Documented:
      comment: Missing homepage and description
      status: ERROR
    FP09 Plurality of Users:
      comment: Missing tracker and usages
      status: ERROR
    FP11 Locus of Authority:
      comment: Missing contact information
      status: ERROR
    FP12 Naming Conventions:
      status: PASS
    FP16 Maintenance:
      comment: Missing version IRI to check date
      status: ERROR
    FP20 Responsiveness:
      comment: Missing tracker and usages
      status: ERROR
    ROBOT Report:
      comment: 3 warnings, 1 info messages.
      file: robot_report
      results:
        ERROR: 0
        INFO: 1
        WARN: 3
      status: WARN
  sha256_hash: 60af01fd21e71e4e0a1c24178cfa75c445a624459af735e84db630159154bd69
  summary:
    comment: 9 errors
    status: ERROR
    summary_count:
      ERROR: 9
      INFO: 1
      WARN: 2
  version: null