{ "R": { "Version": "4.6.1", "Repositories": [ { "Name": "CRAN", "URL": "https://cloud.r-project.org" } ] }, "Packages": { "Achilles": { "Package": "Achilles", "Version": "1.7.2", "Source": "Repository", "Type": "Package", "Title": "Achilles Data Source Characterization", "Date": "2023-05-11", "Authors@R": "c( person(\"Frank\", \"DeFalco\", email = \"fdefalco@ohdsi.org\", role = c(\"aut\",\"cre\")), person(\"Patrick\", \"Ryan\", email = \"ryan@ohdsi.org\", role = c(\"aut\")), person(\"Martijn\", \"Schuemie\", email = \"schuemie@ohdsi.org\", role = c(\"aut\")), person(\"Vojtech\", \"Huser\", role = c(\"aut\")), person(\"Chris\", \"Knoll\", role = c(\"aut\")), person(\"Ajit\", \"Londhe\", email = \"londhe@ohdsi.org\", role = c(\"aut\")), person(\"Taha\", \"Abdul-Basser\", role = c(\"aut\")), person(\"Anthony\", \"Molinaro\", role = c(\"aut\")), person(\"Observational Health Data Science and Informatics\", role = c(\"cph\")) )", "Maintainer": "Frank DeFalco ", "Description": "Automated Characterization of Health Information at Large-Scale Longitudinal Evidence Systems. Creates a descriptive statistics summary for an Observational Medical Outcomes Partnership Common Data Model standardized data source. This package includes functions for executing summary queries on the specified data source and exporting reporting content for use across a variety of Observational Health Data Sciences and Informatics community applications.", "Depends": [ "DatabaseConnector (>= 2.0.0)", "R (>= 4.0.0)" ], "Imports": [ "SqlRender (>= 1.6.0)", "dplyr", "jsonlite", "ParallelLogger", "readr", "data.table", "lubridate", "tseries", "rlang" ], "Suggests": [ "DT", "magrittr", "tidyr", "knitr", "rmarkdown", "testthat (>= 3.0.0)", "withr" ], "VignetteBuilder": "knitr", "License": "Apache License", "RoxygenNote": "7.2.3", "Encoding": "UTF-8", "Config/testthat/edition": "3", "NeedsCompilation": "no", "Author": "Frank DeFalco [aut, cre], Patrick Ryan [aut], Martijn Schuemie [aut], Vojtech Huser [aut], Chris Knoll [aut], Ajit Londhe [aut], Taha Abdul-Basser [aut], Anthony Molinaro [aut], Observational Health Data Science and Informatics [cph]", "Repository": "CRAN" }, "Andromeda": { "Package": "Andromeda", "Version": "1.2.1", "Source": "Repository", "Type": "Package", "Title": "Asynchronous Disk-Based Representation of Massive Data", "Date": "2026-06-11", "Authors@R": "c( person(\"Adam\", \"Black\", , \"black@ohdsi.org\", role = c(\"aut\")), person(\"Egill\", \"Fridgeirsson\", , \"e.fridgeirsson@erasmusmc.nl\", role = c(\"aut\")), person(\"Martijn\", \"Schuemie\", , \"schuemie@ohdsi.org\", role = c(\"aut\", \"cre\")), person(\"Marc A.\", \"Suchard\", , \"msuchard@ucla.edu\", role = c(\"aut\")), person(\"Observational Health Data Science and Informatics\", role = c(\"cph\")) )", "Maintainer": "Martijn Schuemie ", "Description": "Storing very large data objects on a local drive, while still making it possible to manipulate the data in an efficient manner.", "License": "Apache License 2.0", "VignetteBuilder": "knitr", "URL": "https://github.com/OHDSI/Andromeda", "BugReports": "https://github.com/OHDSI/Andromeda/issues", "Depends": [ "dplyr" ], "Imports": [ "DBI", "zip", "methods", "dbplyr", "tidyselect", "cli", "rlang", "pillar", "duckdb (>= 1.3.0)", "memuse" ], "Suggests": [ "testthat", "stringr", "knitr", "rmarkdown", "tibble", "rJava", "rcmdcheck" ], "Encoding": "UTF-8", "Config/roxygen2/version": "8.0.0", "RoxygenNote": "8.0.0", "NeedsCompilation": "no", "Author": "Adam Black [aut], Egill Fridgeirsson [aut], Martijn Schuemie [aut, cre], Marc A. Suchard [aut], Observational Health Data Science and Informatics [cph]", "Repository": "CRAN" }, "AzureAuth": { "Package": "AzureAuth", "Version": "1.3.5", "Source": "Repository", "Title": "Authentication Services for Azure Active Directory", "Authors@R": "c( person(\"Hong\", \"Ooi\", , \"hongooi73@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Tyler\", \"Littlefield\", role=\"ctb\"), person(\"httr development team\", role=\"ctb\", comment=\"Original OAuth listener code\"), person(\"Scott\", \"Holden\", , role = \"ctb\", comment = \"Advice on AAD authentication\"), person(\"Chris\", \"Stone\", , role = \"ctb\", comment = \"Advice on AAD authentication\"), person(\"Microsoft\", role=\"cph\") )", "Description": "Provides Azure Active Directory (AAD) authentication functionality for R users of Microsoft's 'Azure' cloud . Use this package to obtain 'OAuth' 2.0 tokens for services including Azure Resource Manager, Azure Storage and others. It supports both AAD v1.0 and v2.0, as well as multiple authentication methods, including device code and resource owner grant. Tokens are cached in a user-specific directory obtained using the 'rappdirs' package. The interface is based on the 'OAuth' framework in the 'httr' package, but customised and streamlined for Azure. Part of the 'AzureR' family of packages.", "URL": "https://github.com/Azure/AzureAuth https://github.com/Azure/AzureR", "BugReports": "https://github.com/Azure/AzureAuth/issues", "License": "MIT + file LICENSE", "VignetteBuilder": "knitr", "Depends": [ "R (>= 3.3)" ], "Imports": [ "utils", "httr (>= 1.3)", "openssl", "jsonlite", "jose", "R6", "rappdirs" ], "Suggests": [ "knitr", "rmarkdown", "testthat", "httpuv", "shiny", "shinyjs", "AzureRMR", "AzureGraph" ], "Encoding": "UTF-8", "Config/roxygen2/version": "8.1.0", "NeedsCompilation": "no", "Author": "Hong Ooi [aut, cre], Tyler Littlefield [ctb], httr development team [ctb] (Original OAuth listener code), Scott Holden [ctb] (Advice on AAD authentication), Chris Stone [ctb] (Advice on AAD authentication), Microsoft [cph]", "Maintainer": "Hong Ooi ", "Repository": "CRAN" }, "AzureGraph": { "Package": "AzureGraph", "Version": "1.3.5", "Source": "Repository", "Title": "Simple Interface to 'Microsoft Graph'", "Authors@R": "c( person(\"Hong\", \"Ooi\", , \"hongooi73@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Microsoft\", role=\"cph\") )", "Description": "A simple interface to the 'Microsoft Graph' API . 'Graph' is a comprehensive framework for accessing data in various online Microsoft services. This package was originally intended to provide an R interface only to the 'Azure Active Directory' part, with a view to supporting interoperability of R and 'Azure': users, groups, registered apps and service principals. However it has since been expanded into a more general tool for interacting with Graph. Part of the 'AzureR' family of packages.", "URL": "https://github.com/Azure/AzureGraph https://github.com/Azure/AzureR", "BugReports": "https://github.com/Azure/AzureGraph/issues", "License": "MIT + file LICENSE", "VignetteBuilder": "knitr", "Depends": [ "R (>= 3.3)" ], "Imports": [ "AzureAuth (>= 1.0.1)", "utils", "httr (>= 1.3)", "jsonlite", "openssl", "curl", "R6" ], "Suggests": [ "AzureRMR", "vctrs", "knitr", "rmarkdown", "testthat" ], "RoxygenNote": "7.3.1", "NeedsCompilation": "no", "Author": "Hong Ooi [aut, cre], Microsoft [cph]", "Maintainer": "Hong Ooi ", "Repository": "CRAN" }, "AzureRMR": { "Package": "AzureRMR", "Version": "2.4.5", "Source": "Repository", "Title": "Interface to 'Azure Resource Manager'", "Authors@R": "c( person(\"Hong\", \"Ooi\", , \"hongooi73@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Microsoft\", role=\"cph\") )", "Description": "A lightweight but powerful R interface to the 'Azure Resource Manager' REST API. The package exposes a comprehensive class framework and related tools for creating, updating and deleting 'Azure' resource groups, resources and templates. While 'AzureRMR' can be used to manage any 'Azure' service, it can also be extended by other packages to provide extra functionality for specific services. Part of the 'AzureR' family of packages.", "URL": "https://github.com/Azure/AzureRMR https://github.com/Azure/AzureR", "BugReports": "https://github.com/Azure/AzureRMR/issues", "License": "MIT + file LICENSE", "VignetteBuilder": "knitr", "Depends": [ "R (>= 3.3)" ], "Imports": [ "AzureGraph (>= 1.2.0)", "AzureAuth (>= 1.2.1)", "utils", "parallel", "httr (>= 1.3)", "jsonlite", "R6", "uuid" ], "Suggests": [ "knitr", "rmarkdown", "testthat", "httpuv", "AzureStor" ], "RoxygenNote": "7.3.1", "NeedsCompilation": "no", "Author": "Hong Ooi [aut, cre], Microsoft [cph]", "Maintainer": "Hong Ooi ", "Repository": "CRAN" }, "AzureStor": { "Package": "AzureStor", "Version": "3.7.1", "Source": "Repository", "Title": "Storage Management in 'Azure'", "Authors@R": "c( person(\"Hong\", \"Ooi\", , \"hongooi73@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Microsoft\", role=\"cph\") )", "Description": "Manage storage in Microsoft's 'Azure' cloud: . On the admin side, 'AzureStor' includes features to create, modify and delete storage accounts. On the client side, it includes an interface to blob storage, file storage, and 'Azure Data Lake Storage Gen2': upload and download files and blobs; list containers and files/blobs; create containers; and so on. Authenticated access to storage is supported, via either a shared access key or a shared access signature (SAS). Part of the 'AzureR' family of packages.", "License": "MIT + file LICENSE", "URL": "https://github.com/Azure/AzureStor https://github.com/Azure/AzureR", "BugReports": "https://github.com/Azure/AzureStor/issues", "VignetteBuilder": "knitr", "Depends": [ "R (>= 3.3)" ], "Imports": [ "utils", "R6", "httr (>= 1.4.0)", "mime", "openssl", "xml2", "vctrs", "AzureRMR (>= 2.3.0)" ], "Suggests": [ "AzureAuth", "readr", "knitr", "rmarkdown", "jsonlite", "testthat", "processx", "uuid" ], "RoxygenNote": "7.3.2", "NeedsCompilation": "no", "Author": "Hong Ooi [aut, cre], Microsoft [cph]", "Maintainer": "Hong Ooi ", "Repository": "CRAN" }, "BeastJar": { "Package": "BeastJar", "Version": "10.5.1", "Source": "Repository", "Type": "Package", "Title": "JAR Dependency for MCMC Using 'BEAST'", "Authors@R": "c( person(\"Marc A.\", \"Suchard\", email = \"msuchard@ucla.edu\", role = c(\"aut\",\"cre\",\"cph\")), person(\"Andrew\", \"Rambaut\", role = \"cph\"), person(\"Alexei J.\", \"Drummond\", role = \"cph\") )", "Description": "Provides JAR to perform Markov chain Monte Carlo (MCMC) inference using the popular Bayesian Evolutionary Analysis by Sampling Trees 'BEAST X' software library of Baele et al (2025) . 'BEAST X' supports auto-tuning Metropolis-Hastings, slice, Hamiltonian Monte Carlo and Sequential Monte Carlo sampling for a large variety of composable standard and phylogenetic statistical models using high performance computing. By placing the 'BEAST X' JAR in this package, we offer an efficient distribution system for 'BEAST X' use by other R packages using CRAN.", "License": "Apache License 2.0", "Encoding": "UTF-8", "Depends": [ "R (>= 3.5.0)" ], "Imports": [ "rJava" ], "URL": "https://github.com/beast-dev/BeastJar", "Copyright": "See file COPYRIGHTS", "RoxygenNote": "7.3.2", "SystemRequirements": "Java (>= 1.8)", "Suggests": [ "testthat" ], "Language": "en-US", "NeedsCompilation": "no", "Author": "Marc A. Suchard [aut, cre, cph], Andrew Rambaut [cph], Alexei J. Drummond [cph]", "Maintainer": "Marc A. Suchard ", "Repository": "CRAN" }, "BrokenAdaptiveRidge": { "Package": "BrokenAdaptiveRidge", "Version": "1.0.2", "Source": "Repository", "Type": "Package", "Title": "Broken Adaptive Ridge Regression with Cyclops", "Date": "2025-12-23", "Authors@R": "c( person(\"Marc A.\", \"Suchard\", email = \"msuchard@ucla.edu\", role = c(\"aut\",\"cre\")), person(\"Eric\", \"Kawaguchi\", role = \"aut\"), person(\"Ning\", \"Li\", role = \"aut\"), person(\"Gang\", \"Li\", role = \"aut\"), person(\"Observational Health Data Sciences and Informatics\", role = \"cph\") )", "Maintainer": "Marc A. Suchard ", "Description": "Approximates best-subset selection (L0) regression with an iteratively adaptive Ridge (L2) penalty for large-scale models. This package uses Cyclops for an efficient implementation and the iterative method is described in Kawaguchi et al (2020) and Li et al (2021) .", "License": "Apache License 2.0", "Depends": [ "R (>= 3.2.2)", "Cyclops (>= 3.0.0)" ], "Imports": [ "ParallelLogger", "bit64" ], "Suggests": [ "testthat", "survival", "knitr", "rmarkdown" ], "Encoding": "UTF-8", "RoxygenNote": "7.3.2", "NeedsCompilation": "no", "Author": "Marc A. Suchard [aut, cre], Eric Kawaguchi [aut], Ning Li [aut], Gang Li [aut], Observational Health Data Sciences and Informatics [cph]", "Repository": "CRAN" }, "CDMConnector": { "Package": "CDMConnector", "Version": "2.8.0", "Source": "Repository", "Title": "Connect to an OMOP Common Data Model", "Authors@R": "c( person(\"Ger\", \"Inberg\", email = \"g.inberg@erasmusmc.nl\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0001-8993-8748\")), person(\"Adam\", \"Black\", , \"ablack3@gmail.com\", role = c(\"aut\"), comment = c(ORCID = \"0000-0001-5576-8701\")), person(\"Artem\", \"Gorbachev\", , \"artem.gorbachev@odysseusinc.com\", role = \"aut\"), person(\"Edward\", \"Burn\", , \"edward.burn@ndorms.ox.ac.uk\", role = \"aut\"), person(\"Marti\", \"Catala Sabate\", , \"marti.catalasabate@ndorms.ox.ac.uk\", role = \"aut\"), person(\"Ioanna\", \"Nika\", , \"i.nika@darwin-eu.org\", role = \"aut\") )", "Description": "Provides tools for working with observational health data in the Observational Medical Outcomes Partnership (OMOP) Common Data Model format with a pipe friendly syntax. Common data model database table references are stored in a single compound object along with metadata.", "License": "Apache License (>= 2)", "URL": "https://darwin-eu.github.io/CDMConnector/, https://github.com/darwin-eu/CDMConnector", "BugReports": "https://github.com/darwin-eu/CDMConnector/issues", "Encoding": "UTF-8", "RoxygenNote": "7.3.3", "Depends": [ "R (>= 4.1.0)" ], "Imports": [ "httr2", "dplyr", "dbplyr (>= 2.5.0)", "DBI (>= 0.3.0)", "checkmate", "cli", "purrr", "rlang", "tidyselect", "glue", "methods", "withr", "lifecycle", "stringr", "stringi", "generics", "tidyr", "jsonlite", "readr", "omopgenerics (>= 1.4.2)" ], "Suggests": [ "SqlRender", "CirceR", "rJava", "covr", "knitr", "rmarkdown", "duckdb", "RSQLite", "RPostgres", "DatabaseConnector", "odbc", "ggplot2", "bigrquery", "lubridate", "clock", "tibble", "testthat (>= 3.0.0)", "pool", "snakecase", "digest", "rstudioapi", "uuid" ], "Enhances": [ "arrow" ], "Config/testthat/edition": "3", "Config/testthat/parallel": "false", "VignetteBuilder": "knitr", "NeedsCompilation": "no", "Author": "Ger Inberg [aut, cre] (ORCID: ), Adam Black [aut] (ORCID: ), Artem Gorbachev [aut], Edward Burn [aut], Marti Catala Sabate [aut], Ioanna Nika [aut]", "Maintainer": "Ger Inberg ", "Repository": "CRAN" }, "Capr": { "Package": "Capr", "Version": "3.0.0", "Source": "GitHub", "Title": "Cohort Definition Application Programming", "Authors@R": "c( person(\"Martin\", \"Lavallee\", , \"martin.lavallee@boehringer-ingelheim.com\", role = c(\"aut\", \"cre\")), person(\"Adam\", \"Black\", , \"black@ohdsi.org\", role = c(\"aut\")), person(\"Katy\", \"Sadowski\", , \"sadowski@ohdsi.org\", role = c(\"ctb\")) )", "Description": "Provides a programming language for defining cohort definitions in R to use in studies for Observational Health Data Sciences and Informatics (OHDSI). The functions in 'Capr' allow for the programmatic creation of OHDSI concept sets and cohorts that can be serialized to 'OHDSI' compatible 'json' files or to 'OHDSI-SQL'. 'Capr' functions can be used to create, save, and load component parts to a cohort definition allowing R programmers to easily reuse cohort logic. 'Capr' provides tools to create a large number of OHDSI cohorts while also helping bridge the gap between human readable descriptions of clinical phenotypes and their computational implementation.", "License": "Apache License (>= 2)", "URL": "https://ohdsi.github.io/Capr/, https://github.com/OHDSI/Capr/", "BugReports": "https://github.com/OHDSI/Capr/issues/", "Encoding": "UTF-8", "Depends": [ "R (>= 4.2.0)" ], "Imports": [ "jsonlite", "methods", "purrr (>= 1.0.1)", "rlang", "dplyr", "tidyr", "checkmate", "tibble", "readr", "stringr", "glue", "cli", "digest", "fs", "lubridate", "DBI", "DatabaseConnector", "SqlRender", "CirceR", "jsonvalidate" ], "Suggests": [ "testthat (>= 3.0.0)", "knitr", "rmarkdown", "Eunomia", "bit64", "PhenotypeLibrary (>= 3.36.0)", "rstudioapi", "waldo" ], "VignetteBuilder": "knitr", "Config/testthat/edition": "3", "Collate": "'Capr.R' 'conceptSet.R' 'attributes-concept.R' 'attributes-conceptSetSelection.R' 'attributes-dateAdjustment.R' 'attributes-logic.R' 'query.R' 'window.R' 'criteria.R' 'attributes-nested.R' 'attributes-op.R' 'exit.R' 'cohort.R' 'collectCodesetId.R' 'conceptSearch.R' 'jsonToCapr.R' 'print.R'", "Remotes": "ohdsi/PhenotypeLibrary", "Config/roxygen2/version": "8.0.0", "RoxygenNote": "7.3.2", "RemoteType": "github", "RemoteHost": "api.github.com", "RemoteRepo": "Capr", "RemoteUsername": "ohdsi", "RemoteRef": "HEAD", "RemoteSha": "149b91b21eea855ae9aeb7f05b5e05fd8f82b425", "NeedsCompilation": "no", "Author": "Martin Lavallee [aut, cre], Adam Black [aut], Katy Sadowski [ctb]", "Maintainer": "Martin Lavallee " }, "Characterization": { "Package": "Characterization", "Version": "4.1.0", "Source": "Repository", "Type": "Package", "Title": "Implement Descriptive Studies Using the Common Data Model", "Date": "2026-9-15", "Authors@R": "c( person(\"Jenna\", \"Reps\", , \"jreps@its.jnj.com\", role = c(\"aut\", \"cre\")), person(\"Patrick\", \"Ryan\", , \"ryan@ohdsi.org\", role = c(\"aut\")), person(\"Chris\", \"Knoll\", , \"knoll@ohdsi.org\", role = c(\"aut\")) )", "Maintainer": "Jenna Reps ", "Description": "An end-to-end framework that enables users to implement various descriptive studies for a given set of target and outcome cohorts for data mapped to the Observational Medical Outcomes Partnership Common Data Model.", "License": "Apache License 2.0", "URL": "https://ohdsi.github.io/Characterization/, https://github.com/OHDSI/Characterization", "BugReports": "https://github.com/OHDSI/Characterization/issues", "Depends": [ "R (>= 4.0.0)" ], "Imports": [ "Andromeda (>= 1.0.0)", "DatabaseConnector (>= 6.3.1)", "digest", "FeatureExtraction (>= 3.13.0)", "SqlRender (>= 1.9.0)", "ParallelLogger (>= 3.0.0)", "ResultModelManager", "checkmate", "dplyr", "readr", "rlang" ], "Suggests": [ "CohortIncidence (>= 4.1.1)", "devtools", "formatR", "testthat", "kableExtra", "knitr", "markdown", "rmarkdown", "OhdsiShinyAppBuilder", "shiny", "withr" ], "NeedsCompilation": "no", "Encoding": "UTF-8", "VignetteBuilder": "knitr", "Config/roxygen2/version": "8.0.0", "Author": "Jenna Reps [aut, cre], Patrick Ryan [aut], Chris Knoll [aut]", "Repository": "CRAN" }, "CirceR": { "Package": "CirceR", "Version": "1.3.3", "Source": "Repository", "Type": "Package", "Title": "Construct Cohort Inclusion and Restriction Criteria Expressions", "Date": "2024-03-20", "Authors@R": "c( person(\"Chris\", \"Knoll\", , \"cknoll@ohdsi.org\", role = c(\"aut\", \"cre\")), person(\"Martijn\", \"Schuemie\", role = c(\"aut\")) )", "Maintainer": "Chris Knoll ", "Description": "Wraps the 'CIRCE' () 'Java' library allowing cohort definition expressions to be edited and converted to 'Markdown' or 'SQL'.", "License": "Apache License 2.0", "URL": "https://ohdsi.github.io/CirceR/, https://github.com/OHDSI/CirceR/", "BugReports": "https://github.com/OHDSI/CirceR/issues/", "SystemRequirements": "Java (>= 8)", "Depends": [ "R (>= 3.5.0)" ], "Imports": [ "rJava", "RJSONIO" ], "Suggests": [ "testthat", "knitr", "rmarkdown" ], "NeedsCompilation": "no", "RoxygenNote": "7.3.1", "Language": "en-US", "Encoding": "UTF-8", "Author": "Chris Knoll [aut, cre], Martijn Schuemie [aut]", "Repository": "CRAN" }, "CohortDiagnostics": { "Package": "CohortDiagnostics", "Version": "3.4.2", "Source": "GitHub", "Type": "Package", "Title": "Diagnostics for OHDSI Cohorts", "Date": "2024-22-10", "Authors@R": "c( person(\"Jamie\", \"Gilbert\", email = \"gilbert@ohdsi.org\", role = c(\"aut\", \"cre\")), person(\"Gowtham\", \"Rao\", role = c(\"aut\")), person(\"Martijn\", \"Schuemie\", role = c(\"aut\")), person(\"Patrick\", \"Ryan\", role = c(\"aut\")), person(\"James\", \"Weaver\", role = c(\"aut\")), person(\"Observational Health Data Science and Informatics\", role = c(\"cph\")) )", "Maintainer": "Jamie Gilbert ", "Description": "CohortDiagnostics is an R utility package for the development and evaluation of phenotype algorithms for OMOP CDM compliant data sets. This package provides a standard, end to end, set of analytics for understanding patient capture including data generation and result exploration through an R Shiny interface. Analytics computed include cohort characteristics, record counts, index event misclassification, captured observation windows and basic incidence proportions for age, gender and calendar year. Through the identification of errors, CohortDiagnostics enables the comparison of multiple candidate cohort definitions across one or more data sources, facilitating reproducible research.", "Depends": [ "DatabaseConnector (>= 5.0.0)", "FeatureExtraction (>= 3.7.1)", "R (>= 4.1.0)" ], "Imports": [ "Andromeda (>= 0.6.0)", "ResultModelManager (>= 0.5.2)", "checkmate", "clock", "digest", "dplyr (>= 1.0.0)", "methods", "ParallelLogger (>= 3.0.0)", "readr (>= 2.1.0)", "jsonlite", "rlang", "SqlRender (>= 1.9.0)", "stringr", "tidyr (>= 1.2.0)", "CohortGenerator (>= 0.10.0)", "remotes", "scales", "cli" ], "Suggests": [ "Eunomia", "RSQLite (>= 2.2.1)", "testthat", "withr", "zip", "knitr", "shiny", "OhdsiShinyModules", "rsconnect", "yaml" ], "Remotes": "ohdsi/OhdsiShinyModules", "License": "Apache License", "VignetteBuilder": "knitr", "URL": "https://ohdsi.github.io/CohortDiagnostics, https://github.com/OHDSI/CohortDiagnostics", "BugReports": "https://github.com/OHDSI/CohortDiagnostics/issues", "RoxygenNote": "7.3.2", "Encoding": "UTF-8", "Language": "en-US", "StagedInstall": "no", "Config/testthat/edition": "3", "RemoteType": "github", "RemoteHost": "api.github.com", "RemoteRepo": "CohortDiagnostics", "RemoteUsername": "ohdsi", "RemoteRef": "HEAD", "RemoteSha": "fc4ad94e47d80da583d6cbede94e563d1c13330e", "NeedsCompilation": "no", "Author": "Jamie Gilbert [aut, cre], Gowtham Rao [aut], Martijn Schuemie [aut], Patrick Ryan [aut], James Weaver [aut], Observational Health Data Science and Informatics [cph]" }, "CohortExplorer": { "Package": "CohortExplorer", "Version": "0.1.0", "Source": "GitHub", "Type": "Package", "Title": "Explorer of Profiles of Patients in a Cohort", "Date": "2023-10-22", "Authors@R": "c( person(\"Gowtham\", \"Rao\", email = \"rao@ohdsi.org\", role = c(\"aut\", \"cre\")), person(\"Observational Health Data Science and Informatics\", role = c(\"cph\")) )", "Maintainer": "Gowtham Rao ", "Description": "This software tool is designed to extract data from a randomized subset of individuals within a cohort and make it available for exploration in a shiny application environment. It retrieves date-stamped, event-level records from one or more data sources that represent patient data in the Observational Medical Outcomes Partnership (OMOP) data model format. This tool features a user-friendly interface that enables users to efficiently explore the extracted profiles, thereby facilitating applications, such as reviewing structured profiles.", "Depends": [ "R (>= 4.1.0)", "DatabaseConnector (>= 5.0.0)" ], "Imports": [ "checkmate", "dplyr", "lifecycle", "ParallelLogger", "rlang", "stats" ], "Suggests": [ "rmarkdown", "testthat", "knitr", "withr" ], "License": "Apache License", "RoxygenNote": "7.2.3", "VignetteBuilder": "knitr", "Roxygen": "list(markdown = TRUE)", "Encoding": "UTF-8", "Language": "en-US", "URL": "https://ohdsi.github.io/CohortExplorer/, https://github.com/OHDSI/CohortExplorer", "BugReports": "https://github.com/OHDSI/CohortExplorer/issues", "RemoteType": "github", "RemoteHost": "api.github.com", "RemoteRepo": "CohortExplorer", "RemoteUsername": "ohdsi", "RemoteRef": "HEAD", "RemoteSha": "67893895d9d8b0a75852337b5953bd3c556aea1e", "NeedsCompilation": "no", "Author": "Gowtham Rao [aut, cre], Observational Health Data Science and Informatics [cph]" }, "CohortGenerator": { "Package": "CohortGenerator", "Version": "1.1.1", "Source": "Repository", "Type": "Package", "Title": "Cohort Generation for the OMOP Common Data Model", "Date": "2026-07-09", "Authors@R": "c( person(\"Anthony\", \"Sena\", email = \"sena@ohdsi.org\", role = c(\"aut\", \"cre\")), person(\"Jamie\", \"Gilbert\", role = c(\"aut\")), person(\"Gowtham\", \"Rao\", email = \"gowthamrao@gmail.com\", role = c(\"aut\")), person(\"Freddy\", \"Avila Cruz\", role = c(\"aut\")), person(\"Martijn\", \"Schuemie\", email = \"schuemie@ohdsi.org\", role = c(\"aut\")), person(\"Observational Health Data Science and Informatics\", role = c(\"cph\")) )", "Maintainer": "Anthony Sena ", "Description": "Generate cohorts and subsets using an Observational Medical Outcomes Partnership (OMOP) Common Data Model (CDM) Database. Cohorts are defined using 'CIRCE' () or SQL compatible with 'SqlRender' ().", "Depends": [ "DatabaseConnector (>= 5.0.0)", "R (>= 4.1.0)", "R6" ], "Imports": [ "checkmate", "digest", "dplyr", "lubridate", "methods", "ParallelLogger (>= 3.0.0)", "readr (>= 2.1.0)", "rlang", "jsonlite", "ResultModelManager (>= 0.6.0)", "SqlRender (>= 1.11.1)", "stringi (>= 1.7.6)", "tibble" ], "Suggests": [ "CirceR (>= 1.1.1)", "duckdb", "Eunomia", "ggplot2", "knitr", "rmarkdown", "testthat", "withr", "zip" ], "License": "Apache License", "VignetteBuilder": "knitr", "URL": "https://ohdsi.github.io/CohortGenerator/, https://github.com/OHDSI/CohortGenerator", "BugReports": "https://github.com/OHDSI/CohortGenerator/issues", "Encoding": "UTF-8", "Language": "en-US", "LazyData": "true", "Config/roxygen2/version": "8.0.0", "NeedsCompilation": "no", "Author": "Anthony Sena [aut, cre], Jamie Gilbert [aut], Gowtham Rao [aut], Freddy Avila Cruz [aut], Martijn Schuemie [aut], Observational Health Data Science and Informatics [cph]", "Repository": "CRAN" }, "CohortIncidence": { "Package": "CohortIncidence", "Version": "4.2.0", "Source": "Repository", "Type": "Package", "Title": "Cohort Incidence Analysis for the OMOP Common Data Model", "Date": "2026-07-27", "Authors@R": "person(given = \"Christopher\", family = \"Knoll\", role = c(\"aut\", \"cre\"), email = \"cknoll@ohdsi.org\")", "Description": "Provides functionality for performing cohort incidence analyses against data stored in the OMOP Common Data Model (CDM). The package generates database-specific SQL, executes analyses across supported database platforms, and returns standardized incidence estimates using configurable time-at-risk, stratification, and cohort definitions. It is intended to support reproducible observational research within the OHDSI analytics framework.", "License": "Apache License 2.0", "VignetteBuilder": "knitr", "URL": "https://ohdsi.github.io/CohortIncidence/", "BugReports": "https://github.com/OHDSI/CohortIncidence/issues", "Depends": [ "R (>= 3.2.2)", "DatabaseConnector (>= 3.0.0)" ], "Imports": [ "rlang", "rJava(>= 0.9-10)", "checkmate", "jsonlite", "SqlRender (>= 1.6.0)" ], "SystemRequirements": "Java (>= 8)", "NeedsCompilation": "yes", "Encoding": "UTF-8", "Suggests": [ "testthat (>= 3.0.0)", "knitr", "rmarkdown", "withr", "readr", "Eunomia", "duckdb", "R6" ], "Config/testthat/edition": "3", "Config/roxygen2/version": "8.0.0", "Author": "Christopher Knoll [aut, cre]", "Maintainer": "Christopher Knoll ", "Repository": "CRAN" }, "CohortMethod": { "Package": "CohortMethod", "Version": "6.0.3", "Source": "Repository", "Type": "Package", "Title": "Comparative Cohort Method with Large Scale Propensity and Outcome Models", "Date": "2026-06-22", "Authors@R": "c( person(\"Martijn\", \"Schuemie\", , \"schuemie@ohdsi.org\", role = c(\"aut\", \"cre\")), person(\"Marc\", \"Suchard\", role = c(\"aut\")), person(\"Patrick\", \"Ryan\", role = c(\"aut\")) )", "Maintainer": "Martijn Schuemie ", "Description": "Functions for performing comparative cohort studies in an observational database in the Observational Medical Outcomes Partnership (OMOP) Common Data Model. Can extract all necessary data from a database. This implements large-scale propensity scores (LSPS) as described in Tian et al. (2018) , using a large set of covariates, including for example all drugs, diagnoses, procedures, as well as age, comorbidity indexes, etc. Large scale regularized regression is used to fit the propensity and outcome models as described in Suchard et al. (2013) . Functions are included for trimming, stratifying, (variable and fixed ratio) matching and weighting by propensity scores, as well as diagnostic functions, such as propensity score distribution plots and plots showing covariate balance before and after matching and/or trimming. Supported outcome models are (conditional) logistic regression, (conditional) Poisson regression, and (stratified) Cox regression. Also included are Kaplan-Meier plots that can adjust for the stratification or matching.", "License": "Apache License 2.0", "VignetteBuilder": "knitr", "URL": "https://ohdsi.github.io/CohortMethod/, https://github.com/OHDSI/CohortMethod", "BugReports": "https://github.com/OHDSI/CohortMethod/issues", "Depends": [ "R (>= 4.1.0)", "DatabaseConnector (>= 6.0.0)", "Cyclops (>= 3.6.0)", "FeatureExtraction (>= 3.0.0)", "Andromeda (>= 0.6.3)" ], "Imports": [ "methods", "utils", "ggplot2", "gridExtra", "grid", "readr", "plyr", "dplyr", "rlang", "Rcpp (>= 0.11.2)", "SqlRender (>= 1.18.0)", "survival", "ParallelLogger (>= 3.4.2)", "checkmate", "EmpiricalCalibration", "jsonlite", "R6", "digest" ], "Suggests": [ "testthat", "pROC", "knitr", "rmarkdown", "Eunomia", "zip", "withr", "R.utils", "RSQLite", "ResultModelManager", "markdown", "PSweight" ], "SystemRequirements": "Java", "LinkingTo": [ "Rcpp" ], "NeedsCompilation": "yes", "Encoding": "UTF-8", "Config/roxygen2/version": "8.0.0", "Author": "Martijn Schuemie [aut, cre], Marc Suchard [aut], Patrick Ryan [aut]", "Repository": "CRAN" }, "CommonDataModel": { "Package": "CommonDataModel", "Version": "1.0.1", "Source": "Repository", "Type": "Package", "Title": "OMOP CDM DDL and Documentation Generator", "Authors@R": "person(given = \"Clair\", family = \"Blacketer\", role = c(\"aut\", \"cre\"), email = \"mblacke@its.jnj.com\")", "Maintainer": "Clair Blacketer ", "Description": "Generates the scripts required to create an Observational Medical Outcomes Partnership (OMOP) Common Data Model (CDM) database and associated documentation for supported database platforms. Leverages the 'SqlRender' package to convert the Data Definition Language (DDL) script written in parameterized Structured Query Language (SQL) to the other supported dialects.", "License": "Apache License 2.0", "Encoding": "UTF-8", "Depends": [ "DatabaseConnector", "SqlRender", "rJava" ], "Imports": [ "rmarkdown", "stringr", "DBI", "dplyr", "readr" ], "Suggests": [ "knitr", "testthat (>= 3.0.0)", "RSQLite", "withr" ], "NeedsCompilation": "no", "RoxygenNote": "7.2.3", "Config/testthat/edition": "3", "Author": "Clair Blacketer [aut, cre]", "Repository": "CRAN" }, "CompQuadForm": { "Package": "CompQuadForm", "Version": "1.4.4", "Source": "Repository", "Date": "2025-07-13", "Title": "Distribution Function of Quadratic Forms in Normal Variables", "Authors@R": "c(person(\"Pierre\", \"Lafaye De Micheaux\", role = c(\"aut\", \"cre\"), email = \"lafaye@unsw.edu.au\"), person(\"Pierre\", \"Duchesne\", role = c(\"aut\"), email = \"duchesne@dms.umontreal.ca\"), person(c(\"Robert\", \"B.\"), \"Davies\", role = c(\"aut\")), person(c(\"R.\", \"W.\"), \"Farebrother\", role = c(\"aut\")), person(\"J.\", \"Sheil\", role = c(\"aut\")), person(\"I.\", \"O Muircheartaigh\", role = c(\"aut\")))", "Author": "Pierre Lafaye De Micheaux [aut, cre], Pierre Duchesne [aut], Robert B. Davies [aut], R. W. Farebrother [aut], J. Sheil [aut], I. O Muircheartaigh [aut]", "Maintainer": "Pierre Lafaye De Micheaux ", "Description": "Computes the distribution function of quadratic forms in normal variables using Imhof's method, Davies's algorithm, Farebrother's algorithm or Liu et al.'s algorithm.", "License": "GPL (>= 2)", "LazyLoad": "yes", "NeedsCompilation": "yes", "Repository": "CRAN" }, "Cyclops": { "Package": "Cyclops", "Version": "3.7.1", "Source": "Repository", "Type": "Package", "Title": "Cyclic Coordinate Descent for Logistic, Poisson and Survival Analysis", "Authors@R": "c( person(\"Marc A.\", \"Suchard\", email = \"msuchard@ucla.edu\", role = c(\"aut\",\"cre\")), person(\"Martijn J.\", \"Schuemie\", role = \"aut\"), person(\"Trevor R.\", \"Shaddox\", role = \"aut\"), person(\"Yuxi\", \"Tian\", role = \"aut\"), person(\"Jianxiao\", \"Yang\", role = \"aut\"), person(\"Eric\", \"Kawaguchi\", role = \"aut\"), person(\"Sushil\", \"Mittal\", role =\"ctb\"), person(\"Observational Health Data Sciences and Informatics\", role = \"cph\"), person(\"Marcus\", \"Geelnard\", role = c(\"cph\", \"ctb\"), comment = \"provided the TinyThread library\"), person(\"Rutgers University\", role = c(\"cph\", \"ctb\"), comment = \"provided the HParSearch routine\"), person(\"R Development Core Team\", role = c(\"cph\", \"ctb\"), comment = \"provided the ZeroIn routine\") )", "Description": "This model fitting tool incorporates cyclic coordinate descent and majorization-minimization approaches to fit a variety of regression models found in large-scale observational healthcare data. Implementations focus on computational optimization and fine-scale parallelization to yield efficient inference in massive datasets. Please see: Suchard, Simpson, Zorych, Ryan and Madigan (2013) .", "License": "Apache License 2.0", "LazyData": "Yes", "Biarch": "true", "URL": "https://github.com/ohdsi/cyclops", "BugReports": "https://github.com/ohdsi/cyclops/issues", "Depends": [ "R (>= 3.5.0)" ], "Imports": [ "rlang", "Matrix", "Rcpp (>= 0.12.12)", "Andromeda", "dplyr", "methods", "survival", "tidyr", "bit", "bit64" ], "LinkingTo": [ "Rcpp", "RcppEigen (>= 0.3.2)" ], "Suggests": [ "testthat", "readr", "MASS", "gnm", "ggplot2", "microbenchmark", "cmprsk", "boot", "rsample" ], "NeedsCompilation": "yes", "RoxygenNote": "7.3.2", "Encoding": "UTF-8", "Author": "Marc A. Suchard [aut, cre], Martijn J. Schuemie [aut], Trevor R. Shaddox [aut], Yuxi Tian [aut], Jianxiao Yang [aut], Eric Kawaguchi [aut], Sushil Mittal [ctb], Observational Health Data Sciences and Informatics [cph], Marcus Geelnard [cph, ctb] (provided the TinyThread library), Rutgers University [cph, ctb] (provided the HParSearch routine), R Development Core Team [cph, ctb] (provided the ZeroIn routine)", "Maintainer": "Marc A. Suchard ", "Repository": "CRAN" }, "DBI": { "Package": "DBI", "Version": "1.3.0", "Source": "Repository", "Title": "R Database Interface", "Date": "2026-02-11", "Authors@R": "c( person(\"R Special Interest Group on Databases (R-SIG-DB)\", role = \"aut\"), person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Kirill\", \"Müller\", , \"kirill@cynkra.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-1416-3412\")), person(\"R Consortium\", role = \"fnd\") )", "Description": "A database interface definition for communication between R and relational database management systems. All classes in this package are virtual and need to be extended by the various R/DBMS implementations.", "License": "LGPL (>= 2.1)", "URL": "https://dbi.r-dbi.org, https://github.com/r-dbi/DBI", "BugReports": "https://github.com/r-dbi/DBI/issues", "Depends": [ "methods", "R (>= 3.0.0)" ], "Suggests": [ "arrow", "blob", "callr", "covr", "DBItest (>= 1.8.2)", "dbplyr", "downlit", "dplyr", "glue", "hms", "knitr", "magrittr", "nanoarrow (>= 0.3.0.1)", "otel", "otelsdk", "RMariaDB", "rmarkdown", "rprojroot", "RSQLite (>= 1.1-2)", "testthat (>= 3.0.0)", "vctrs", "xml2" ], "VignetteBuilder": "knitr", "Config/autostyle/scope": "line_breaks", "Config/autostyle/strict": "false", "Config/Needs/check": "r-dbi/DBItest", "Config/Needs/website": "r-dbi/DBItest, r-dbi/dbitemplate, adbi, AzureKusto, bigrquery, DatabaseConnector, dittodb, duckdb, implyr, lazysf, odbc, pool, RAthena, IMSMWU/RClickhouse, RH2, RJDBC, RMariaDB, RMySQL, RPostgres, RPostgreSQL, RPresto, RSQLite, sergeant, sparklyr, withr", "Config/testthat/edition": "3", "Encoding": "UTF-8", "RoxygenNote": "7.3.3.9000", "NeedsCompilation": "no", "Author": "R Special Interest Group on Databases (R-SIG-DB) [aut], Hadley Wickham [aut], Kirill Müller [aut, cre] (ORCID: ), R Consortium [fnd]", "Maintainer": "Kirill Müller ", "Repository": "CRAN" }, "DataQualityDashboard": { "Package": "DataQualityDashboard", "Version": "2.8.9", "Source": "Repository", "Type": "Package", "Title": "Execute and View Data Quality Checks on OMOP CDM Database", "Date": "2026-05-17", "Authors@R": "c( person(\"Katy\", \"Sadowski\", email = \"sadowski@ohdsi.org\", role = c(\"aut\", \"cre\")), person(\"Clair\", \"Blacketer\", role = c(\"aut\")), person(\"Maxim\", \"Moinat\", role = c(\"aut\")), person(\"Ajit\", \"Londhe\", role = c(\"aut\")), person(\"Anthony\", \"Sena\", role = c(\"aut\")), person(\"Anthony\", \"Molinaro\", role = c(\"aut\")), person(\"Frank\", \"DeFalco\", role = c(\"aut\")), person(\"Pavel\", \"Grafkin\", role = c(\"aut\")) )", "Author": "Katy Sadowski [aut, cre], Clair Blacketer [aut], Maxim Moinat [aut], Ajit Londhe [aut], Anthony Sena [aut], Anthony Molinaro [aut], Frank DeFalco [aut], Pavel Grafkin [aut]", "Maintainer": "Katy Sadowski ", "Description": "Assesses data quality in Observational Medical Outcomes Partnership Common Data Model (OMOP CDM) databases. Executes data quality checks and provides an R 'shiny' application to view the results.", "License": "Apache License 2.0", "Config/build/clean-inst-doc": "FALSE", "VignetteBuilder": "knitr", "Config/testthat/edition": "3", "URL": "https://github.com/OHDSI/DataQualityDashboard", "BugReports": "https://github.com/OHDSI/DataQualityDashboard/issues", "Depends": [ "R (>= 3.2.2)", "DatabaseConnector (>= 2.0.2)" ], "Imports": [ "magrittr", "ParallelLogger", "dplyr", "jsonlite", "rJava", "SqlRender (>= 1.10.1)", "plyr", "stringr", "rlang", "tidyselect", "readr" ], "Suggests": [ "testthat", "knitr", "rmarkdown", "markdown", "shiny", "ggplot2", "Eunomia (>= 2.0.0)", "R.utils", "devtools" ], "RoxygenNote": "7.3.2", "Encoding": "UTF-8", "NeedsCompilation": "no", "Repository": "CRAN" }, "DatabaseConnector": { "Package": "DatabaseConnector", "Version": "8.0.0", "Source": "Repository", "Type": "Package", "Title": "Connecting to Various Database Platforms", "Date": "2026-10-01", "Authors@R": "c( person(\"Martijn\", \"Schuemie\", email = \"schuemie@ohdsi.org\", role = c(\"aut\", \"cre\")), person(\"Marc\", \"Suchard\", role = c(\"aut\")), person(\"Adam\", \"Black\", role = c(\"aut\")), person(\"Observational Health Data Science and Informatics\", role = c(\"cph\")), person(\"Microsoft Inc.\", role = c(\"cph\"), comment = \"SQL Server JDBC driver\"), person(\"PostgreSQL Global Development Group\", role = c(\"cph\"), comment = \"PostgreSQL JDBC driver\"), person(\"Oracle Inc.\", role = c(\"cph\"), comment = \"Oracle JDBC driver\"), person(\"Amazon Inc.\", role = c(\"cph\"), comment = \"RedShift JDBC driver\") )", "Description": "An R 'DataBase Interface' ('DBI') compatible interface to various database platforms ('PostgreSQL', 'Oracle', 'Microsoft SQL Server', 'Amazon Redshift', 'Microsoft Parallel Database Warehouse', 'IBM Netezza', 'Apache Impala', 'Google BigQuery', 'Snowflake', 'Spark', 'SQLite', and 'InterSystems IRIS'). Also includes support for fetching data as 'Andromeda' objects. Uses either 'Java Database Connectivity' ('JDBC') or other 'DBI' drivers to connect to databases.", "SystemRequirements": "Java (>= 8)", "Depends": [ "R (>= 4.0.0)" ], "Imports": [ "rJava", "SqlRender (>= 1.19.7)", "methods", "stringr", "readr", "rlang", "utils", "DBI (>= 1.0.0)", "urltools", "bit64", "checkmate", "digest", "dbplyr (>= 2.6.0)" ], "Suggests": [ "aws.s3", "R.utils", "withr", "testthat", "DBItest", "knitr", "rmarkdown", "RSQLite", "ssh", "Andromeda", "dplyr", "RPostgres", "odbc", "duckdb", "bigrquery", "pool", "ParallelLogger", "AzureStor", "data.table" ], "License": "Apache License", "VignetteBuilder": "knitr", "URL": "https://ohdsi.github.io/DatabaseConnector/, https://github.com/OHDSI/DatabaseConnector", "BugReports": "https://github.com/OHDSI/DatabaseConnector/issues", "Copyright": "See file COPYRIGHTS", "Encoding": "UTF-8", "Config/roxygen2/version": "8.1.0", "NeedsCompilation": "no", "Author": "Martijn Schuemie [aut, cre], Marc Suchard [aut], Adam Black [aut], Observational Health Data Science and Informatics [cph], Microsoft Inc. [cph] (SQL Server JDBC driver), PostgreSQL Global Development Group [cph] (PostgreSQL JDBC driver), Oracle Inc. [cph] (Oracle JDBC driver), Amazon Inc. [cph] (RedShift JDBC driver)", "Maintainer": "Martijn Schuemie ", "Repository": "CRAN" }, "DeepPatientLevelPrediction": { "Package": "DeepPatientLevelPrediction", "Version": "2.3.0", "Source": "GitHub", "Type": "Package", "Title": "Deep Learning for Patient Level Prediction Using Data in the OMOP Common Data Model", "Authors@R": "c( person(\"Egill\", \"Fridgeirsson\", email = \"e.fridgeirsson@erasmusmc.nl\", role = c(\"aut\", \"cre\")), person(\"Jenna\", \"Reps\", email = \"jreps@its.jnj.com\", role = c(\"aut\")), person(\"Seng\", \"Chan You\", role = c(\"aut\")), person(\"Chungsoo\", \"Kim\", role = c(\"aut\")), person(\"Henrik\", \"John\", role = c(\"aut\")) )", "Maintainer": "Egill Fridgeirsson ", "Description": "Develop deep learning patient level prediction models following the OHDSI PatientLevelPrediction framework.", "License": "Apache License 2.0", "URL": "https://github.com/OHDSI/DeepPatientLevelPrediction", "BugReports": "https://github.com/OHDSI/DeepPatientLevelPrediction/issues", "VignetteBuilder": "knitr", "Depends": [ "R (>= 4.1.0)" ], "Imports": [ "dplyr", "ParallelLogger (>= 2.0.0)", "PatientLevelPrediction (>= 6.5.0)", "rlang", "withr", "reticulate (>= 1.41)" ], "Suggests": [ "Eunomia", "knitr", "rmarkdown", "testthat", "PRROC", "FeatureExtraction (>= 3.7.0)", "ResultModelManager (>= 0.2.0)", "DatabaseConnector (>= 6.3.0)", "Andromeda (> 1.0.0)" ], "RoxygenNote": "7.3.2", "Encoding": "UTF-8", "Config/testthat/edition": "3", "Config/testthat/parallel": "FALSE", "RemoteType": "github", "RemoteHost": "api.github.com", "RemoteRepo": "DeepPatientLevelPrediction", "RemoteUsername": "ohdsi", "RemoteRef": "HEAD", "RemoteSha": "9061ff5c3e8a9d029a2650989677557891352c4d", "NeedsCompilation": "no", "Author": "Egill Fridgeirsson [aut, cre], Jenna Reps [aut], Seng Chan You [aut], Chungsoo Kim [aut], Henrik John [aut]" }, "Deriv": { "Package": "Deriv", "Version": "4.3.5", "Source": "Repository", "Type": "Package", "Title": "Symbolic Differentiation", "Date": "2026-09-03", "Authors@R": "c(person(given=\"Andrew\", family=\"Clausen\", role=\"aut\"), person(given=\"Serguei\", family=\"Sokol\", role=c(\"aut\", \"cre\"), email=\"sokol@insa-toulouse.fr\", comment = c(ORCID = \"0000-0002-5674-3327\")), person(given=\"Andreas\", family=\"Rappold\", role=\"ctb\", email=\"arappold@gmx.at\"))", "Description": "R-based solution for symbolic differentiation. It admits user-defined function as well as function substitution in arguments of functions to be differentiated. Some symbolic simplification is part of the work.", "License": "GPL (>= 3)", "Depends": [ "Rcpp", "R (>= 4.5)" ], "LinkingTo": [ "Rcpp" ], "NeedsCompilation": "yes", "Suggests": [ "testthat (>= 0.11.0)" ], "BugReports": "https://github.com/sgsokol/Deriv/issues", "RoxygenNote": "7.3.3", "Imports": [ "methods" ], "Encoding": "UTF-8", "Author": "Andrew Clausen [aut], Serguei Sokol [aut, cre] (ORCID: ), Andreas Rappold [ctb]", "Maintainer": "Serguei Sokol ", "Repository": "CRAN" }, "EmpiricalCalibration": { "Package": "EmpiricalCalibration", "Version": "3.1.4", "Source": "Repository", "Type": "Package", "Title": "Routines for Performing Empirical Calibration of Observational Study Estimates", "Date": "2025-02-14", "Authors@R": "c( person(\"Martijn\", \"Schuemie\", , \"schuemie@ohdsi.org\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-0817-5361\")), person(\"Marc\", \"Suchard\", role = c(\"aut\"), comment = c(ORCID = \"0000-0001-9818-479X\")) )", "Maintainer": "Martijn Schuemie ", "Description": "Routines for performing empirical calibration of observational study estimates. By using a set of negative control hypotheses we can estimate the empirical null distribution of a particular observational study setup. This empirical null distribution can be used to compute a calibrated p-value, which reflects the probability of observing an estimated effect size when the null hypothesis is true taking both random and systematic error into account. A similar approach can be used to calibrate confidence intervals, using both negative and positive controls. For more details, see Schuemie et al. (2013) and Schuemie et al. 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Learn more about 'OhdsiReportGenerator' at .", "License": "Apache License 2.0", "URL": "https://ohdsi.github.io/OhdsiReportGenerator/, https://github.com/OHDSI/OhdsiReportGenerator", "BugReports": "https://github.com/OHDSI/OhdsiReportGenerator/issues", "VignetteBuilder": "knitr", "Depends": [ "R (>= 4.1.0)" ], "Imports": [ "CirceR", "DatabaseConnector", "forestploter", "dplyr", "ggplot2", "grDevices", "grid", "gt", "gtExtras", "kableExtra", "ParallelLogger", "quarto", "rlang", "rmarkdown", "SqlRender", "tidyr" ], "Suggests": [ "htmltools", "knitr", "markdown", "ResultModelManager", "RSQLite", "testthat (>= 3.0.0)" ], "Encoding": "UTF-8", "Config/testthat/edition": "3", "Config/roxygen2/version": "8.0.0", "NeedsCompilation": "no", "Author": "Jenna Reps [aut, cre], Anthony Sena [aut]", "Repository": "CRAN" }, "OhdsiSharing": { "Package": "OhdsiSharing", "Version": "0.2.2", "Source": "GitHub", "Type": "Package", "Title": "Package for sharing of the results of the OHDSI tools", "Date": "2020-06-18", "Authors@R": "c( person(\"Martijn\", \"Schuemie\", , \"schuemie@ohdsi.org\", role = c(\"aut\")), person(\"Marc\", \"Suchard\", , \"msuchard@ucla.edu\", role = c(\"aut\", \"cre\")), person(\"Lee\", \"Evans\", role = c(\"aut\")) )", "Maintainer": "Marc Suchard ", "Description": "Package for sharing of the results of the OHDSI tools, with functions for encrypting results and sending results through SFTP to a central site.", "URL": "https://ohdsi.github.io/OhdsiSharing, https://github.com/OHDSI/OhdsiSharing", "BugReports": "https://github.com/OHDSI/OhdsiSharing/issues", "Imports": [ "rJava", "ParallelLogger" ], "Suggests": [ "testthat" ], "License": "Apache License", "RoxygenNote": "7.1.1", "RemoteType": "github", "RemoteHost": "api.github.com", "RemoteRepo": "OhdsiSharing", "RemoteUsername": "ohdsi", "RemoteRef": "HEAD", "RemoteSha": "6fada2156ac78bfcd6ccea8ec4d6972e3bafa24f", "NeedsCompilation": "no", "Author": "Martijn Schuemie [aut], Marc Suchard [aut, cre], Lee Evans [aut]" }, "OhdsiShinyAppBuilder": { "Package": "OhdsiShinyAppBuilder", "Version": "1.1.0", "Source": "Repository", "Type": "Package", "Title": "Viewing Observational Health Data Sciences and Informatics Results via 'shiny' Modules", "Date": "2026-07-22", "Authors@R": "c( person(\"Jenna\", \"Reps\", email = \"jreps@its.jnj.com\", role = c(\"aut\", \"cre\")), person(\"Nathan\", \"Hall\", role = c(\"aut\")), person(\"Josh\", \"Ide\", role = c(\"aut\")), person(\"Jamie\", \"Gibert\", role = c(\"aut\")) )", "Maintainer": "Jenna Reps ", "Description": "Users can build a single 'shiny' app for exploring population characterization, population-level causal effect estimation, and patient-level prediction results generated via the R analyses packages in 'HADES' (see ). 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(2015) .", "License": "GPL-3", "Suggests": [ "testthat", "ggplot2", "ROCR" ], "Depends": [ "rlang" ], "NeedsCompilation": "no", "Author": "Jan Grau [aut, cre], Jens Keilwagen [aut]", "Maintainer": "Jan Grau ", "Repository": "CRAN" }, "ParallelLogger": { "Package": "ParallelLogger", "Version": "3.5.1", "Source": "Repository", "Type": "Package", "Title": "Support for Parallel Computation, Logging, and Function Automation", "Date": "2025-10-29", "Authors@R": "c( person(\"Martijn\", \"Schuemie\", email = \"schuemie@ohdsi.org\", role = c(\"aut\", \"cre\")), person(\"Marc\", \"Suchard\", role = c(\"aut\")), person(\"Observational Health Data Science and Informatics\", role = c(\"cph\")) )", "Maintainer": "Martijn Schuemie ", "Description": "Support for parallel computation with progress bar, and option to stop or proceed on errors. Also provides logging to console and disk, and the logging persists in the parallel threads. 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The package handles the intermediary steps by converting R-objects to JSON and vice versa.", "License": "Apache License 2.0", "Depends": [ "R (>= 3.1.0)" ], "Imports": [ "checkmate", "dplyr", "httr (>= 1.3.1)", "lubridate", "openxlsx (>= 4.0.17)", "purrr", "readr", "RJSONIO", "scales", "SqlRender", "stringr", "tibble", "tidyr", "rlang" ], "Suggests": [ "testthat", "knitr", "rmarkdown", "httpuv", "jsonlite", "withr", "httptest", "stringi" ], "URL": "https://ohdsi.github.io/ROhdsiWebApi/, https://github.com/OHDSI/ROhdsiWebApi", "BugReports": "https://github.com/OHDSI/ROhdsiWebApi/issues", "NeedsCompilation": "no", "RoxygenNote": "7.2.3", "Encoding": "UTF-8", "VignetteBuilder": "knitr", "Language": "en-US", "RemoteType": "github", "RemoteHost": "api.github.com", "RemoteRepo": "ROhdsiWebApi", "RemoteUsername": "ohdsi", "RemoteRef": "HEAD", "RemoteSha": "44e549a92f7c4d51b7e090d2ac4b5032ed974ce0", "Author": "Gowtham Rao [aut, cre], Martijn Schuemie [aut], Jamie Gilbert [aut], Observational Health Data Science and Informatics [cph]" }, "RSQLite": { "Package": "RSQLite", "Version": "3.53.3", "Source": "Repository", "Title": "SQLite Interface for R", "Date": "2026-06-28", "Authors@R": "c( person(\"Kirill\", \"Müller\", , \"kirill@cynkra.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-1416-3412\")), person(\"Hadley\", \"Wickham\", role = \"aut\"), person(c(\"David\", \"A.\"), \"James\", role = \"aut\"), person(\"Seth\", \"Falcon\", role = \"aut\"), person(\"D. Richard\", \"Hipp\", role = \"ctb\", comment = \"for the included SQLite sources\"), person(\"Dan\", \"Kennedy\", role = \"ctb\", comment = \"for the included SQLite sources\"), person(\"Joe\", \"Mistachkin\", role = \"ctb\", comment = \"for the included SQLite sources\"), person(, \"SQLite Authors\", role = \"ctb\", comment = \"for the included SQLite sources\"), person(\"Liam\", \"Healy\", role = \"ctb\", comment = \"for the included SQLite sources\"), person(\"R Consortium\", role = \"fnd\"), person(, \"RStudio\", role = \"cph\") )", "Description": "Embeds the SQLite database engine in R and provides an interface compliant with the DBI package. The source for the SQLite engine and for various extensions is included. System libraries will never be consulted because this package relies on static linking for the plugins it includes; this also ensures a consistent experience across all installations. Optionally, when libcurl is available at build time, an experimental HTTP/HTTPS virtual file system (VFS) can be enabled to allow read-only access to remote immutable SQLite database files via URIs.", "License": "LGPL (>= 2.1)", "URL": "https://rsqlite.r-dbi.org, https://github.com/r-dbi/RSQLite", "BugReports": "https://github.com/r-dbi/RSQLite/issues", "Depends": [ "R (>= 3.1.0)" ], "Imports": [ "bit64", "blob (>= 1.2.0)", "DBI (>= 1.2.0)", "memoise", "methods", "pkgconfig", "rlang" ], "Suggests": [ "callr", "cli", "DBItest (>= 1.8.0)", "decor", "gert", "gh", "hms", "httpuv", "knitr", "magrittr", "rmarkdown", "rvest", "testthat (>= 3.0.0)", "withr", "xml2" ], "LinkingTo": [ "cpp11 (>= 0.4.0)" ], "VignetteBuilder": "knitr", "Config/Needs/website": "r-dbi/dbitemplate", "Config/autostyle/scope": "line_breaks", "Config/autostyle/strict": "false", "Config/testthat/edition": "3", "Encoding": "UTF-8", "Collate": "'SQLiteConnection.R' 'SQLKeywords_SQLiteConnection.R' 'SQLiteDriver.R' 'SQLite.R' 'SQLiteResult.R' 'coerce.R' 'compatRowNames.R' 'copy.R' 'cpp11.R' 'datasetsDb.R' 'dbAppendTable_SQLiteConnection.R' 'dbBeginTransaction.R' 'dbBegin_SQLiteConnection.R' 'dbBind_SQLiteResult.R' 'dbClearResult_SQLiteResult.R' 'dbColumnInfo_SQLiteResult.R' 'dbCommit_SQLiteConnection.R' 'dbConnect_SQLiteConnection.R' 'dbConnect_SQLiteDriver.R' 'dbDataType_SQLiteConnection.R' 'dbDataType_SQLiteDriver.R' 'dbDisconnect_SQLiteConnection.R' 'dbExistsTable_SQLiteConnection_Id.R' 'dbExistsTable_SQLiteConnection_character.R' 'dbFetch_SQLiteResult.R' 'dbGetException_SQLiteConnection.R' 'dbGetInfo_SQLiteConnection.R' 'dbGetInfo_SQLiteDriver.R' 'dbGetPreparedQuery.R' 'dbGetPreparedQuery_SQLiteConnection_character_data.frame.R' 'dbGetRowCount_SQLiteResult.R' 'dbGetRowsAffected_SQLiteResult.R' 'dbGetStatement_SQLiteResult.R' 'dbHasCompleted_SQLiteResult.R' 'dbIsValid_SQLiteConnection.R' 'dbIsValid_SQLiteDriver.R' 'dbIsValid_SQLiteResult.R' 'dbListObjects_SQLiteConnection.R' 'dbListResults_SQLiteConnection.R' 'dbListTables_SQLiteConnection.R' 'dbQuoteIdentifier_SQLiteConnection_SQL.R' 'dbQuoteIdentifier_SQLiteConnection_character.R' 'dbReadTable_SQLiteConnection_character.R' 'dbRemoveTable_SQLiteConnection_character.R' 'dbRollback_SQLiteConnection.R' 'dbSendPreparedQuery.R' 'dbSendPreparedQuery_SQLiteConnection_character_data.frame.R' 'dbSendQuery_SQLiteConnection_character.R' 'dbUnloadDriver_SQLiteDriver.R' 'dbUnquoteIdentifier_SQLiteConnection_SQL.R' 'dbWriteTable_SQLiteConnection_character_character.R' 'dbWriteTable_SQLiteConnection_character_data.frame.R' 'db_bind.R' 'deprecated.R' 'export.R' 'fetch_SQLiteResult.R' 'httpvfs.R' 'httpvfs_config.R' 'import-standalone-check_suggested.R' 'import-standalone-purrr.R' 'initExtension.R' 'initRegExp.R' 'isSQLKeyword_SQLiteConnection_character.R' 'make.db.names_SQLiteConnection_character.R' 'pkgconfig.R' 'show_SQLiteConnection.R' 'sqlData_SQLiteConnection.R' 'table.R' 'transactions.R' 'utils.R' 'version.R' 'zzz.R'", "Config/roxygen2/version": "8.0.0.9000", "NeedsCompilation": "yes", "Author": "Kirill Müller [aut, cre] (ORCID: ), Hadley Wickham [aut], David A. James [aut], Seth Falcon [aut], D. Richard Hipp [ctb] (for the included SQLite sources), Dan Kennedy [ctb] (for the included SQLite sources), Joe Mistachkin [ctb] (for the included SQLite sources), SQLite Authors [ctb] (for the included SQLite sources), Liam Healy [ctb] (for the included SQLite sources), R Consortium [fnd], RStudio [cph]", "Maintainer": "Kirill Müller ", "Repository": "CRAN" }, "Rcpp": { "Package": "Rcpp", "Version": "1.1.2", "Source": "Repository", "Title": "Seamless R and C++ Integration", "Date": "2026-07-01", "Authors@R": "c(person(\"Dirk\", \"Eddelbuettel\", role = c(\"aut\", \"cre\"), email = \"edd@debian.org\", comment = c(ORCID = \"0000-0001-6419-907X\")), person(\"Romain\", \"Francois\", role = \"aut\", comment = c(ORCID = \"0000-0002-2444-4226\")), person(\"JJ\", \"Allaire\", role = \"aut\", comment = c(ORCID = \"0000-0003-0174-9868\")), person(\"Kevin\", \"Ushey\", role = \"aut\", comment = c(ORCID = \"0000-0003-2880-7407\")), person(\"Qiang\", \"Kou\", role = \"aut\", comment = c(ORCID = \"0000-0001-6786-5453\")), person(\"Nathan\", \"Russell\", role = \"aut\"), person(\"Iñaki\", \"Ucar\", role = \"aut\", comment = c(ORCID = \"0000-0001-6403-5550\")), person(\"Doug\", \"Bates\", role = \"aut\", comment = c(ORCID = \"0000-0001-8316-9503\")), person(\"John\", \"Chambers\", role = \"aut\"))", "Description": "The 'Rcpp' package provides R functions as well as C++ classes which offer a seamless integration of R and C++. Many R data types and objects can be mapped back and forth to C++ equivalents which facilitates both writing of new code as well as easier integration of third-party libraries. Documentation about 'Rcpp' is provided by several vignettes included in this package, via the 'Rcpp Gallery' site at , the paper by Eddelbuettel and Francois (2011, ), the book by Eddelbuettel (2013, ) and the paper by Eddelbuettel and Balamuta (2018, ); see 'citation(\"Rcpp\")' for details.", "Depends": [ "R (>= 3.5.0)" ], "Imports": [ "methods", "utils" ], "Suggests": [ "tinytest", "inline", "rbenchmark", "pkgKitten (>= 0.1.2)" ], "URL": "https://www.rcpp.org, https://dirk.eddelbuettel.com/code/rcpp.html, https://github.com/RcppCore/Rcpp", "License": "GPL (>= 2)", "BugReports": "https://github.com/RcppCore/Rcpp/issues", "RoxygenNote": "6.1.1", "Encoding": "UTF-8", "VignetteBuilder": "Rcpp", "NeedsCompilation": "yes", "Author": "Dirk Eddelbuettel [aut, cre] (ORCID: ), Romain Francois [aut] (ORCID: ), JJ Allaire [aut] (ORCID: ), Kevin Ushey [aut] (ORCID: ), Qiang Kou [aut] (ORCID: ), Nathan Russell [aut], Iñaki Ucar [aut] (ORCID: ), Doug Bates [aut] (ORCID: ), John Chambers [aut]", "Maintainer": "Dirk Eddelbuettel ", "Repository": "CRAN" }, "RcppArmadillo": { "Package": "RcppArmadillo", "Version": "15.6.0-1", "Source": "Repository", "Type": "Package", "Title": "'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra Library", "Date": "2026-09-07", "Authors@R": "c(person(\"Dirk\", \"Eddelbuettel\", role = c(\"aut\", \"cre\"), email = \"edd@debian.org\", comment = c(ORCID = \"0000-0001-6419-907X\")), person(\"Romain\", \"Francois\", role = \"aut\", comment = c(ORCID = \"0000-0002-2444-4226\")), person(\"Doug\", \"Bates\", role = \"aut\", comment = c(ORCID = \"0000-0001-8316-9503\")), person(\"Binxiang\", \"Ni\", role = \"aut\"), person(\"Conrad\", \"Sanderson\", role = \"aut\", comment = c(ORCID = \"0000-0002-0049-4501\")))", "Description": "'Armadillo' is a templated C++ linear algebra library aiming towards a good balance between speed and ease of use. It provides high-level syntax and functionality deliberately similar to Matlab. It is useful for algorithm development directly in C++, or quick conversion of research code into production environments. It provides efficient classes for vectors, matrices and cubes where dense and sparse matrices are supported. Integer, floating point and complex numbers are supported. A sophisticated expression evaluator (based on template meta-programming) automatically combines several operations to increase speed and efficiency. Dynamic evaluation automatically chooses optimal code paths based on detected matrix structures. Matrix decompositions are provided through integration with LAPACK, or one of its high performance drop-in replacements (such as 'MKL' or 'OpenBLAS'). It can automatically use 'OpenMP' multi-threading (parallelisation) to speed up computationally expensive operations. . The 'RcppArmadillo' package includes the header files from the 'Armadillo' library; users do not need to install 'Armadillo' itself in order to use 'RcppArmadillo'. Starting from release 15.0.0, the minimum compilation standard is C++14. . Since release 7.800.0, 'Armadillo' is licensed under Apache License 2; previous releases were under licensed as MPL 2.0 from version 3.800.0 onwards and LGPL-3 prior to that; 'RcppArmadillo' (the 'Rcpp' bindings/bridge to Armadillo) is licensed under the GNU GPL version 2 or later, as is the rest of 'Rcpp'.", "License": "GPL (>= 2)", "LazyLoad": "yes", "Depends": [ "R (>= 3.3.0)" ], "LinkingTo": [ "Rcpp" ], "Imports": [ "Rcpp (>= 1.1.1)", "stats", "utils", "methods" ], "Suggests": [ "tinytest", "Matrix (>= 1.3.0)", "pkgKitten", "reticulate", "slam" ], "URL": "https://github.com/RcppCore/RcppArmadillo, https://dirk.eddelbuettel.com/code/rcpp.armadillo.html", "BugReports": "https://github.com/RcppCore/RcppArmadillo/issues", "RoxygenNote": "6.0.1", "Encoding": "UTF-8", "VignetteBuilder": "Rcpp", "NeedsCompilation": "yes", "Author": "Dirk Eddelbuettel [aut, cre] (ORCID: ), Romain Francois [aut] (ORCID: ), Doug Bates [aut] (ORCID: ), Binxiang Ni [aut], Conrad Sanderson [aut] (ORCID: )", "Maintainer": "Dirk Eddelbuettel ", "Repository": "CRAN" }, "RcppEigen": { "Package": "RcppEigen", "Version": "0.3.4.0.2", "Source": "Repository", "Type": "Package", "Title": "'Rcpp' Integration for the 'Eigen' Templated Linear Algebra Library", "Date": "2024-08-23", "Authors@R": "c(person(\"Doug\", \"Bates\", role = \"aut\", comment = c(ORCID = \"0000-0001-8316-9503\")), person(\"Dirk\", \"Eddelbuettel\", role = c(\"aut\", \"cre\"), email = \"edd@debian.org\", comment = c(ORCID = \"0000-0001-6419-907X\")), person(\"Romain\", \"Francois\", role = \"aut\", comment = c(ORCID = \"0000-0002-2444-4226\")), person(\"Yixuan\", \"Qiu\", role = \"aut\", comment = c(ORCID = \"0000-0003-0109-6692\")), person(\"Authors of\", \"Eigen\", role = \"cph\", comment = \"Authorship and copyright in included Eigen library as detailed in inst/COPYRIGHTS\"))", "Copyright": "See the file COPYRIGHTS for various Eigen copyright details", "Description": "R and 'Eigen' integration using 'Rcpp'. 'Eigen' is a C++ template library for linear algebra: matrices, vectors, numerical solvers and related algorithms. It supports dense and sparse matrices on integer, floating point and complex numbers, decompositions of such matrices, and solutions of linear systems. Its performance on many algorithms is comparable with some of the best implementations based on 'Lapack' and level-3 'BLAS'. The 'RcppEigen' package includes the header files from the 'Eigen' C++ template library. Thus users do not need to install 'Eigen' itself in order to use 'RcppEigen'. Since version 3.1.1, 'Eigen' is licensed under the Mozilla Public License (version 2); earlier version were licensed under the GNU LGPL version 3 or later. 'RcppEigen' (the 'Rcpp' bindings/bridge to 'Eigen') is licensed under the GNU GPL version 2 or later, as is the rest of 'Rcpp'.", "License": "GPL (>= 2) | file LICENSE", "LazyLoad": "yes", "Depends": [ "R (>= 3.6.0)" ], "LinkingTo": [ "Rcpp" ], "Imports": [ "Rcpp (>= 0.11.0)", "stats", "utils" ], "Suggests": [ "Matrix", "inline", "tinytest", "pkgKitten", "microbenchmark" ], "URL": "https://github.com/RcppCore/RcppEigen, https://dirk.eddelbuettel.com/code/rcpp.eigen.html", "BugReports": "https://github.com/RcppCore/RcppEigen/issues", "NeedsCompilation": "yes", "Author": "Doug Bates [aut] (), Dirk Eddelbuettel [aut, cre] (), Romain Francois [aut] (), Yixuan Qiu [aut] (), Authors of Eigen [cph] (Authorship and copyright in included Eigen library as detailed in inst/COPYRIGHTS)", "Maintainer": "Dirk Eddelbuettel ", "Repository": "CRAN" }, "RcppTOML": { "Package": "RcppTOML", "Version": "0.2.3", "Source": "Repository", "Type": "Package", "Title": "'Rcpp' Bindings to Parser for \"Tom's Obvious Markup Language\"", "Date": "2025-03-08", "Authors@R": "c(person(\"Dirk\", \"Eddelbuettel\", role = c(\"aut\", \"cre\"), email = \"edd@debian.org\", comment = c(ORCID = \"0000-0001-6419-907X\")), person(\"Mark\", \"Gillard\", role = \"aut\", comment = \"Author of 'toml++' header library\"))", "Description": "The configuration format defined by 'TOML' (which expands to \"Tom's Obvious Markup Language\") specifies an excellent format (described at ) suitable for both human editing as well as the common uses of a machine-readable format. This package uses 'Rcpp' to connect to the 'toml++' parser written by Mark Gillard to R.", "SystemRequirements": "A C++17 compiler", "BugReports": "https://github.com/eddelbuettel/rcpptoml/issues", "URL": "http://dirk.eddelbuettel.com/code/rcpp.toml.html", "Imports": [ "Rcpp (>= 1.0.8)" ], "Depends": [ "R (>= 3.3.0)" ], "LinkingTo": [ "Rcpp" ], "Suggests": [ "tinytest" ], "License": "GPL (>= 2)", "NeedsCompilation": "yes", "Author": "Dirk Eddelbuettel [aut, cre] (), Mark Gillard [aut] (Author of 'toml++' header library)", "Maintainer": "Dirk Eddelbuettel ", "Repository": "CRAN" }, "Rdpack": { "Package": "Rdpack", "Version": "2.6.6", "Source": "Repository", "Type": "Package", "Title": "Update and Manipulate Rd Documentation Objects", "Authors@R": "c( person(given = c(\"Georgi\", \"N.\"), family = \"Boshnakov\", role = c(\"aut\", \"cre\"), email = \"georgi.boshnakov@manchester.ac.uk\", comment = c(ORCID = \"0000-0003-2839-346X\")), person(given = \"Duncan\", family = \"Murdoch\", role = \"ctb\", email = \"murdoch.duncan@gmail.com\") )", "Description": "Functions for manipulation of R documentation objects, including functions reprompt() and ereprompt() for updating 'Rd' documentation for functions, methods and classes; 'Rd' macros for citations and import of references from 'bibtex' files for use in 'Rd' files and 'roxygen2' comments; 'Rd' macros for evaluating and inserting snippets of 'R' code and the results of its evaluation or creating graphics on the fly; and many functions for manipulation of references and Rd files.", "URL": "https://geobosh.github.io/Rdpack/ (doc), https://CRAN.R-project.org/package=Rdpack", "BugReports": "https://github.com/GeoBosh/Rdpack/issues", "Depends": [ "R (>= 2.15.0)", "methods" ], "Imports": [ "tools", "utils", "rbibutils (> 2.4)" ], "Suggests": [ "grDevices", "testthat", "rstudioapi", "rprojroot", "gbRd" ], "License": "GPL (>= 2)", "LazyLoad": "yes", "Encoding": "UTF-8", "RoxygenNote": "7.1.1", "NeedsCompilation": "no", "Author": "Georgi N. Boshnakov [aut, cre] (ORCID: ), Duncan Murdoch [ctb]", "Maintainer": "Georgi N. Boshnakov ", "Repository": "CRAN" }, "ResultModelManager": { "Package": "ResultModelManager", "Version": "0.6.2", "Source": "Repository", "Title": "Result Model Manager", "Authors@R": "person(\"Jamie\", \"Gilbert\", , \"gilbert@ohdsi.org\", role = c(\"aut\", \"cre\"))", "Description": "Database data model management utilities for R packages in the Observational Health Data Sciences and Informatics programme. 'ResultModelManager' provides utility functions to allow package maintainers to migrate existing SQL database models, export and import results in consistent patterns.", "URL": "https://github.com/OHDSI/ResultModelManager, https://ohdsi.github.io/ResultModelManager/", "BugReports": "https://github.com/OHDSI/ResultModelManager/issues", "License": "Apache License (== 2.0)", "Encoding": "UTF-8", "VignetteBuilder": "knitr", "RoxygenNote": "7.3.2", "Depends": [ "R (>= 4.1.0)", "R6", "DatabaseConnector (>= 7.0.0)" ], "Imports": [ "SqlRender", "ParallelLogger", "checkmate", "DBI", "pool", "readr", "zip", "dplyr", "dbplyr", "rlang", "lubridate", "fastmap", "withr" ], "Suggests": [ "testthat (>= 3.0.0)", "RSQLite", "duckdb", "knitr", "rmarkdown", "keyring", "devtools", "pkgdown", "remotes", "styler", "rJava", "reticulate" ], "Config/testthat/edition": "3", "NeedsCompilation": "no", "Author": "Jamie Gilbert [aut, cre]", "Maintainer": "Jamie Gilbert ", "Repository": "CRAN" }, "S7": { "Package": "S7", "Version": "0.2.2", "Source": "Repository", "Title": "An Object Oriented System Meant to Become a Successor to S3 and S4", "Authors@R": "c( person(\"Object-Oriented Programming Working Group\", role = \"cph\"), person(\"Davis\", \"Vaughan\", role = \"aut\"), person(\"Jim\", \"Hester\", role = \"aut\", comment = c(ORCID = \"0000-0002-2739-7082\")), person(\"Tomasz\", \"Kalinowski\", role = \"aut\"), person(\"Will\", \"Landau\", role = \"aut\"), person(\"Michael\", \"Lawrence\", role = \"aut\"), person(\"Martin\", \"Maechler\", role = \"aut\", comment = c(ORCID = \"0000-0002-8685-9910\")), person(\"Luke\", \"Tierney\", role = \"aut\"), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-4757-117X\")) )", "Description": "A new object oriented programming system designed to be a successor to S3 and S4. It includes formal class, generic, and method specification, and a limited form of multiple dispatch. It has been designed and implemented collaboratively by the R Consortium Object-Oriented Programming Working Group, which includes representatives from R-Core, 'Bioconductor', 'Posit'/'tidyverse', and the wider R community.", "License": "MIT + file LICENSE", "URL": "https://rconsortium.github.io/S7/, https://github.com/RConsortium/S7", "BugReports": "https://github.com/RConsortium/S7/issues", "Depends": [ "R (>= 3.5.0)" ], "Imports": [ "utils" ], "Suggests": [ "bench", "callr", "covr", "knitr", "methods", "rmarkdown", "testthat (>= 3.2.0)", "tibble" ], "VignetteBuilder": "knitr", "Config/build/compilation-database": "true", "Config/Needs/website": "sloop", "Config/testthat/edition": "3", "Config/testthat/parallel": "TRUE", "Config/testthat/start-first": "external-generic", "Encoding": "UTF-8", "RoxygenNote": "7.3.3", "NeedsCompilation": "yes", "Author": "Object-Oriented Programming Working Group [cph], Davis Vaughan [aut], Jim Hester [aut] (ORCID: ), Tomasz Kalinowski [aut], Will Landau [aut], Michael Lawrence [aut], Martin Maechler [aut] (ORCID: ), Luke Tierney [aut], Hadley Wickham [aut, cre] (ORCID: )", "Maintainer": "Hadley Wickham ", "Repository": "CRAN" }, "SelfControlledCaseSeries": { "Package": "SelfControlledCaseSeries", "Version": "6.1.5", "Source": "Repository", "Type": "Package", "Title": "Self-Controlled Case Series", "Date": "2026-05-07", "Authors@R": "c( person(\"Martijn\", \"Schuemie\", , \"schuemie@ohdsi.org\", role = c(\"aut\", \"cre\")), person(\"Patrick\", \"Ryan\", role = c(\"aut\")), person(\"Trevor\", \"Shaddox\", role = c(\"aut\")), person(\"Marc\", \"Suchard\", role = c(\"aut\")) )", "Maintainer": "Martijn Schuemie ", "Description": "Execute the self-controlled case series (SCCS) design using observational data in the OMOP Common Data Model. Extracts all necessary data from the database and transforms it to the format required for SCCS. Age and season can be modeled using splines assuming constant hazard within calendar months. Event-dependent censoring of the observation period can be corrected for. Many exposures can be included at once (MSCCS), with regularization on all coefficients except for the exposure of interest. 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(2013) . 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Leeper [aut] (ORCID: ), Boettiger Carl [ctb], Andrew Martin [ctb], Mark Thompson [ctb], Tyler Hunt [ctb], Steven Akins [ctb], Bao Nguyen [ctb], Thierry Onkelinx [ctb], Andrii Degtiarov [ctb], Dhruv Aggarwal [ctb], Alyssa Columbus [ctb], Simon Urbanek [cre, ctb]", "Repository": "CRAN" }, "aws.signature": { "Package": "aws.signature", "Version": "0.6.2", "Source": "Repository", "Type": "Package", "Title": "Amazon Web Services Request Signatures", "Date": "2020-06-01", "Authors@R": "c(person(\"Thomas J.\", \"Leeper\", role = \"aut\", email = \"thosjleeper@gmail.com\", comment = c(ORCID = \"0000-0003-4097-6326\")), person(\"Jonathan\", \"Stott\", email = \"jonathan.stott@magairports.com\", role = \"aut\"), person(\"Gonzalo\", \"Diaz\", email = \"gonzalomartindiaz22@gmail.com\", role = c(\"cre\", \"aut\"), comment = c(ORCID = \"0009-0003-9056-4896\")), person(\"Mike\", \"Kaminsky\", email = \"kaminsky.michael@gmail.com\", role = \"ctb\"), person(\"Mark\", \"Douthwaite\", email = \"mark.douthwaite@peak.ai\", role = \"ctb\"), person(\"Jason\", \"Gofford\", email = \"jason.gofford@peak.ai\", role = \"ctb\"), person(\"Luke\", \"Dyer\", email = \"luke.dyer@peak.ai\", role = \"ctb\") )", "Description": "Generates version 2 and version 4 request signatures for Amazon Web Services ('AWS') Application Programming Interfaces ('APIs') and provides a mechanism for retrieving credentials from environment variables, 'AWS' credentials files, and 'EC2' instance metadata. 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Brazzale ", "Note": "Maintainers are not available to give advice on using a package they did not author.", "Description": "Functions and datasets for bootstrapping from the book \"Bootstrap Methods and Their Application\" by A. C. Davison and D. V. Hinkley (1997, CUP), originally written by Angelo Canty for S.", "Title": "Bootstrap Functions", "Depends": [ "R (>= 3.0.0)", "graphics", "stats" ], "Suggests": [ "MASS", "survival" ], "LazyData": "yes", "ByteCompile": "yes", "License": "Unlimited", "NeedsCompilation": "no", "Author": "Angelo Canty [aut] (author of original code for S), Brian Ripley [aut, trl] (conversion to R, maintainer 1999--2022, author of parallel support), Alessandra R. 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"NeedsCompilation": "no", "Author": "Hadley Wickham [aut, cre], Maximilian Girlich [aut], Edgar Ruiz [aut], Posit Software, PBC [cph, fnd]", "Maintainer": "Hadley Wickham ", "Repository": "CRAN" }, "digest": { "Package": "digest", "Version": "0.6.39", "Source": "Repository", "Authors@R": "c(person(\"Dirk\", \"Eddelbuettel\", role = c(\"aut\", \"cre\"), email = \"edd@debian.org\", comment = c(ORCID = \"0000-0001-6419-907X\")), person(\"Antoine\", \"Lucas\", role=\"ctb\", comment = c(ORCID = \"0000-0002-8059-9767\")), person(\"Jarek\", \"Tuszynski\", role=\"ctb\"), person(\"Henrik\", \"Bengtsson\", role=\"ctb\", comment = c(ORCID = \"0000-0002-7579-5165\")), person(\"Simon\", \"Urbanek\", role=\"ctb\", comment = c(ORCID = \"0000-0003-2297-1732\")), person(\"Mario\", \"Frasca\", role=\"ctb\"), person(\"Bryan\", \"Lewis\", role=\"ctb\"), person(\"Murray\", \"Stokely\", role=\"ctb\"), person(\"Hannes\", \"Muehleisen\", role=\"ctb\", comment = c(ORCID = \"0000-0001-8552-0029\")), 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objects, as well as functions such as 'hmac()' to create hash-based message authentication code. 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'stat-count.R' 'stat-density-2d.R' 'stat-density.R' 'stat-ecdf.R' 'stat-ellipse.R' 'stat-function.R' 'stat-identity.R' 'stat-manual.R' 'stat-qq-line.R' 'stat-qq.R' 'stat-quantilemethods.R' 'stat-sf-coordinates.R' 'stat-sf.R' 'stat-smooth-methods.R' 'stat-smooth.R' 'stat-sum.R' 'stat-summary-bin.R' 'stat-summary-hex.R' 'stat-summary.R' 'stat-unique.R' 'stat-ydensity.R' 'summarise-plot.R' 'summary.R' 'theme.R' 'theme-defaults.R' 'theme-current.R' 'theme-sub.R' 'utilities-break.R' 'utilities-grid.R' 'utilities-help.R' 'utilities-patterns.R' 'utilities-resolution.R' 'utilities-tidy-eval.R' 'zxx.R' 'zzz.R'", "NeedsCompilation": "no", "Author": "Hadley Wickham [aut] (ORCID: ), Winston Chang [aut] (ORCID: ), Lionel Henry [aut], Thomas Lin Pedersen [aut, cre] (ORCID: ), Kohske Takahashi [aut], Claus Wilke [aut] (ORCID: ), Kara Woo [aut] (ORCID: ), Hiroaki Yutani [aut] (ORCID: ), Dewey Dunnington [aut] (ORCID: ), Teun van den Brand [aut] (ORCID: ), Posit, PBC [cph, fnd] (ROR: )", "Maintainer": "Thomas Lin Pedersen ", "Repository": "CRAN" }, "ggpubr": { "Package": "ggpubr", "Version": "1.0.0", "Source": "Repository", "Type": "Package", "Title": "'ggplot2' Based Publication Ready Plots", "Date": "2026-07-06", "Authors@R": "c( person(\"Alboukadel\", \"Kassambara\", role = c(\"aut\", \"cre\"), email = \"alboukadel.kassambara@gmail.com\"), person(\"Laszlo\", \"Erdey\", role = \"ctb\", email = \"erdey.laszlo@econ.unideb.hu\", comment = \"Faculty of Economics and Business, University of Debrecen, Hungary\"))", "Author": "Alboukadel Kassambara [aut, cre], Laszlo Erdey [ctb] (Faculty of Economics and Business, University of Debrecen, Hungary)", "Maintainer": "Alboukadel Kassambara ", "Description": "The 'ggplot2' package is excellent and flexible for elegant data visualization in R. However the default generated plots require some formatting before we can send them for publication. Furthermore, to customize a 'ggplot', the syntax is opaque and this raises the level of difficulty for researchers with no advanced R programming skills. 'ggpubr' provides some easy-to-use functions for creating and customizing 'ggplot2'-based publication ready plots. This version includes modern R ecosystem compatibility updates and customizable p-value formatting presets (APA, AMA, NEJM, Lancet, GraphPad, and scientific notation) for publication workflows, plus robust sparse-subset handling in statistical annotation layers such as 'stat_compare_means()' and 'geom_pwc()', with informative per-group skip diagnostics for non-comparable subsets.", "License": "GPL (>= 2)", "LazyData": "TRUE", "Encoding": "UTF-8", "Depends": [ "R (>= 4.1.0)", "ggplot2 (>= 3.5.2)" ], "Imports": [ "ggrepel (>= 0.9.2)", "grid", "ggsci", "stats", "utils", "tidyr (>= 1.3.2)", "purrr", "dplyr (>= 1.2.0)", "cowplot (>= 1.2.0)", "ggsignif", "scales", "gridExtra", "glue", "polynom", "rlang (>= 1.1.7)", "rstatix (>= 1.0.0)", "tibble", "magrittr" ], "Suggests": [ "grDevices", "knitr", "RColorBrewer", "gtable", "testthat" ], "URL": "https://rpkgs.datanovia.com/ggpubr/, https://github.com/kassambara/ggpubr", "BugReports": "https://github.com/kassambara/ggpubr/issues", "RoxygenNote": "7.3.3", "Collate": "'utilities_color.R' 'utilities_base.R' 'desc_statby.R' 'utilities.R' 'add_summary.R' 'annotate_figure.R' 'as_ggplot.R' 'as_npc.R' 'axis_scale.R' 'background_image.R' 'bgcolor.R' 'border.R' 'p_format_utils.R' 'compare_means.R' 'create_aes.R' 'diff_express.R' 'facet.R' 'font.R' 'gene_citation.R' 'gene_expression.R' 'geom_bracket.R' 'geom_exec.R' 'utils-aes.R' 'utils_stat_test_label.R' 'geom_pwc.R' 'get_breaks.R' 'get_coord.R' 'get_legend.R' 'get_palette.R' 'ggadd.R' 'ggadjust_pvalue.R' 'ggarrange.R' 'ggballoonplot.R' 'ggpar.R' 'ggbarplot.R' 'ggboxplot.R' 'ggdensity.R' 'ggpie.R' 'ggdonutchart.R' 'stat_conf_ellipse.R' 'stat_chull.R' 'ggdotchart.R' 'ggdotplot.R' 'ggecdf.R' 'ggerrorplot.R' 'ggexport.R' 'gghistogram.R' 'ggline.R' 'ggmaplot.R' 'ggpaired.R' 'ggparagraph.R' 'ggpubr-package.R' 'ggpubr_args.R' 'ggpubr_options.R' 'ggqqplot.R' 'utilities_label.R' 'stat_cor.R' 'stat_stars.R' 'ggscatter.R' 'ggscatterhist.R' 'ggstripchart.R' 'ggsummarystats.R' 'ggtext.R' 'ggtexttable.R' 'ggviolin.R' 'gradient_color.R' 'grids.R' 'npc_to_data_coord.R' 'reexports.R' 'rotate.R' 'rotate_axis_text.R' 'rremove.R' 'set_palette.R' 'shared_docs.R' 'show_line_types.R' 'show_point_shapes.R' 'stat_anova_test.R' 'stat_central_tendency.R' 'stat_compare_means.R' 'stat_friedman_test.R' 'stat_kruskal_test.R' 'stat_mean.R' 'stat_overlay_normal_density.R' 'stat_pvalue_manual.R' 'stat_regline_equation.R' 'stat_welch_anova_test.R' 'text_grob.R' 'theme_pubr.R' 'theme_transparent.R' 'utils-geom-signif.R' 'utils-pipe.R' 'utils-tidyr.R' 'zzz.R'", "NeedsCompilation": "no", "Repository": "CRAN" }, "ggrepel": { "Package": "ggrepel", "Version": "0.9.8", "Source": "Repository", "Authors@R": "c( person(\"Kamil\", \"Slowikowski\", email = \"kslowikowski@gmail.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-2843-6370\")), person(\"Teun\", \"van den Brand\", role = \"ctb\", comment = c(ORCID = \"0000-0002-9335-7468\")), person(\"Alicia\", \"Schep\", role = \"ctb\", comment = c(ORCID = \"0000-0002-3915-0618\")), person(\"Sean\", \"Hughes\", role = \"ctb\", comment = c(ORCID = \"0000-0002-9409-9405\")), person(\"Trung Kien\", \"Dang\", role = \"ctb\", comment = c(ORCID = \"0000-0001-7562-6495\")), person(\"Saulius\", \"Lukauskas\", role = \"ctb\"), person(\"Jean-Olivier\", \"Irisson\", role = \"ctb\", comment = c(ORCID = \"0000-0003-4920-3880\")), person(\"Zhian N\", \"Kamvar\", role = \"ctb\", comment = c(ORCID = \"0000-0003-1458-7108\")), person(\"Thompson\", \"Ryan\", role = \"ctb\", comment = c(ORCID = \"0000-0002-0450-8181\")), person(\"Dervieux\", \"Christophe\", role = \"ctb\", comment = c(ORCID = \"0000-0003-4474-2498\")), person(\"Yutani\", \"Hiroaki\", role = \"ctb\"), person(\"Pierre\", \"Gramme\", role = \"ctb\"), person(\"Amir Masoud\", \"Abdol\", role = \"ctb\"), person(\"Malcolm\", \"Barrett\", role = \"ctb\", comment = c(ORCID = \"0000-0003-0299-5825\")), person(\"Robrecht\", \"Cannoodt\", role = \"ctb\", comment = c(ORCID = \"0000-0003-3641-729X\")), person(\"Michał\", \"Krassowski\", role = \"ctb\", comment = c(ORCID = \"0000-0002-9638-7785\")), person(\"Michael\", \"Chirico\", role = \"ctb\", comment = c(ORCID = \"0000-0003-0787-087X\")), person(\"Pedro\", \"Aphalo\", role = \"ctb\", comment = c(ORCID = \"0000-0003-3385-972X\")), person(\"Francis\", \"Barton\", role = \"ctb\") )", "Title": "Automatically Position Non-Overlapping Text Labels with 'ggplot2'", "Description": "Provides text and label geoms for 'ggplot2' that help to avoid overlapping text labels. Labels repel away from each other and away from the data points.", "Depends": [ "R (>= 4.1.0)", "ggplot2 (>= 3.5.2)" ], "Imports": [ "grid", "Rcpp", "rlang (>= 1.1.6)", "S7", "scales (>= 1.4.0)", "withr (>= 3.0.2)" ], "Suggests": [ "knitr", "rmarkdown", "testthat", "svglite", "vdiffr", "gridExtra", "ggpp", "patchwork", "devtools", "prettydoc", "ggbeeswarm", "dplyr", "magrittr", "readr", "stringr", "marquee", "rsvg", "sf" ], "VignetteBuilder": "knitr", "License": "GPL-3 | file LICENSE", "URL": "https://ggrepel.slowkow.com/, https://github.com/slowkow/ggrepel", "BugReports": "https://github.com/slowkow/ggrepel/issues", "RoxygenNote": "7.3.3", "LinkingTo": [ "Rcpp" ], "Encoding": "UTF-8", "NeedsCompilation": "yes", "Author": "Kamil Slowikowski [aut, cre] (ORCID: ), Teun van den Brand [ctb] (ORCID: ), Alicia Schep [ctb] (ORCID: ), Sean Hughes [ctb] (ORCID: ), Trung Kien Dang [ctb] (ORCID: ), Saulius Lukauskas [ctb], Jean-Olivier Irisson [ctb] (ORCID: ), Zhian N Kamvar [ctb] (ORCID: ), Thompson Ryan [ctb] (ORCID: ), Dervieux Christophe [ctb] (ORCID: ), Yutani Hiroaki [ctb], Pierre Gramme [ctb], Amir Masoud Abdol [ctb], Malcolm Barrett [ctb] (ORCID: ), Robrecht Cannoodt [ctb] (ORCID: ), Michał Krassowski [ctb] (ORCID: ), Michael Chirico [ctb] (ORCID: ), Pedro Aphalo [ctb] (ORCID: ), Francis Barton [ctb]", "Maintainer": "Kamil Slowikowski ", "Repository": "CRAN" }, "ggsci": { "Package": "ggsci", "Version": "5.2.0", "Source": "Repository", "Type": "Package", "Title": "Scientific Journal and Sci-Fi Themed Color Palettes for 'ggplot2'", "Authors@R": "c( person(\"Nan\", \"Xiao\", email = \"me@nanx.me\", role = c(\"aut\", \"cre\", \"cph\"), comment = c(ORCID = \"0000-0002-0250-5673\")), person(\"Joshua\", \"Cook\", email = \"joshuacook0023@gmail.com\", role = \"ctb\"), person(\"Clara\", \"Jégousse\", email = \"cat3@hi.is\", role = \"ctb\"), person(\"Hui\", \"Chen\", email = \"huichen@zju.edu.cn\", role = \"ctb\"), person(\"Miaozhu\", \"Li\", email = \"miaozhu.li@duke.edu\", role = \"ctb\"), person(\"iTerm2-Color-Schemes contributors\", role = c(\"ctb\", \"cph\"), comment = \"iTerm2-Color-Schemes project\"), person(\"Winston\", \"Chang\", role = c(\"ctb\", \"cph\"), comment = \"staticimports.R\") )", "Maintainer": "Nan Xiao ", "Description": "A collection of 'ggplot2' color palettes inspired by plots in scientific journals, data visualization libraries, science fiction movies, and TV shows.", "License": "GPL (>= 3)", "URL": "https://nanx.me/ggsci/, https://github.com/nanxstats/ggsci", "BugReports": "https://github.com/nanxstats/ggsci/issues", "Depends": [ "R (>= 3.5.0)" ], "Imports": [ "ggplot2 (>= 2.0.0)", "grDevices", "rlang", "scales" ], "Suggests": [ "gridExtra", "knitr", "ragg", "rmarkdown" ], "VignetteBuilder": "knitr", "Encoding": "UTF-8", "Config/roxygen2/version": "8.0.0", "NeedsCompilation": "no", "Author": "Nan Xiao [aut, cre, cph] (ORCID: ), Joshua Cook [ctb], Clara Jégousse [ctb], Hui Chen [ctb], Miaozhu Li [ctb], iTerm2-Color-Schemes contributors [ctb, cph] (iTerm2-Color-Schemes project), Winston Chang [ctb, cph] (staticimports.R)", "Repository": "CRAN" }, "ggsignif": { "Package": "ggsignif", "Version": "0.6.4", "Source": "Repository", "Type": "Package", "Title": "Significance Brackets for 'ggplot2'", "Authors@R": "c( person(given = \"Constantin\", family = \"Ahlmann-Eltze\", role = c(\"aut\", \"cre\", \"ctb\"), email = \"artjom31415@googlemail.com\", comment = c(ORCID = \"0000-0002-3762-068X\", Twitter = \"@const_ae\")), person(given = \"Indrajeet\", family = \"Patil\", role = c(\"aut\", \"ctb\"), email = \"patilindrajeet.science@gmail.com\", comment = c(ORCID = \"0000-0003-1995-6531\", Twitter = \"@patilindrajeets\")) )", "Description": "Enrich your 'ggplots' with group-wise comparisons. This package provides an easy way to indicate if two groups are significantly different. Commonly this is shown by a bracket on top connecting the groups of interest which itself is annotated with the level of significance (NS, *, **, ***). The package provides a single layer (geom_signif()) that takes the groups for comparison and the test (t.test(), wilcox.text() etc.) as arguments and adds the annotation to the plot.", "License": "GPL-3 | file LICENSE", "URL": "https://const-ae.github.io/ggsignif/, https://github.com/const-ae/ggsignif", "VignetteBuilder": "knitr", "Encoding": "UTF-8", "Language": "en-US", "Imports": [ "ggplot2 (>= 3.3.5)" ], "Suggests": [ "knitr", "rmarkdown", "testthat", "vdiffr (>= 1.0.2)" ], "RoxygenNote": "7.2.1", "Config/testthat/edition": "3", "Config/testthat/parallel": "true", "NeedsCompilation": "no", "Author": "Constantin Ahlmann-Eltze [aut, cre, ctb] (, @const_ae), Indrajeet Patil [aut, ctb] (, @patilindrajeets)", "Maintainer": "Constantin Ahlmann-Eltze ", "Repository": "CRAN" }, "ggtext": { "Package": "ggtext", "Version": "0.2.0", "Source": "Repository", "Type": "Package", "Title": "Improved Text Rendering Support for 'ggplot2'", "Authors@R": "c( person( given = \"Claus O.\", family = \"Wilke\", role = c(\"aut\"), email = \"wilke@austin.utexas.edu\", comment = c(ORCID = \"0000-0002-7470-9261\") ), person( given = \"Brenton M.\", family = \"Wiernik\", role = c(\"aut\", \"cre\"), email = \"brenton@wiernik.org\", comment = c(ORCID = \"0000-0001-9560-6336\", Twitter = \"@bmwiernik\") ) )", "Description": "A 'ggplot2' extension that enables the rendering of complex formatted plot labels (titles, subtitles, facet labels, axis labels, etc.). Text boxes with automatic word wrap are also supported.", "URL": "https://wilkelab.org/ggtext/", "BugReports": "https://github.com/wilkelab/ggtext/issues", "License": "GPL-2", "Depends": [ "R (>= 3.5)" ], "Imports": [ "ggplot2 (>= 3.3.0)", "grid", "gridtext", "rlang", "scales" ], "Suggests": [ "cowplot", "dplyr", "glue", "knitr", "rmarkdown", "testthat", "vdiffr" ], "Encoding": "UTF-8", "VignetteBuilder": "knitr", "Config/roxygen2/version": "8.0.0", "NeedsCompilation": "no", "Author": "Claus O. Wilke [aut] (ORCID: ), Brenton M. Wiernik [aut, cre] (ORCID: , Twitter: @bmwiernik)", "Maintainer": "Brenton M. Wiernik ", "Repository": "CRAN" }, "glue": { "Package": "glue", "Version": "1.8.1", "Source": "Repository", "Title": "Interpreted String Literals", "Authors@R": "c( person(\"Jim\", \"Hester\", role = \"aut\", comment = c(ORCID = \"0000-0002-2739-7082\")), person(\"Jennifer\", \"Bryan\", , \"jenny@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-6983-2759\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", "Description": "An implementation of interpreted string literals, inspired by Python's Literal String Interpolation and Docstrings and Julia's Triple-Quoted String Literals .", "License": "MIT + file LICENSE", "URL": "https://glue.tidyverse.org/, https://github.com/tidyverse/glue", "BugReports": "https://github.com/tidyverse/glue/issues", "Depends": [ "R (>= 4.1)" ], "Imports": [ "methods" ], "Suggests": [ "crayon", "DBI (>= 1.2.0)", "dplyr", "knitr", "rlang", "rmarkdown", "RSQLite", "testthat (>= 3.2.0)", "vctrs (>= 0.3.0)", "waldo (>= 0.5.3)", "withr" ], "VignetteBuilder": "knitr", "ByteCompile": "true", "Config/Needs/website": "bench, forcats, ggbeeswarm, ggplot2, R.utils, rprintf, tidyr, tidyverse/tidytemplate", "Config/testthat/edition": "3", "Config/usethis/last-upkeep": "2026-04-16", "Encoding": "UTF-8", "RoxygenNote": "7.3.3", "NeedsCompilation": "yes", "Author": "Jim Hester [aut] (ORCID: ), Jennifer Bryan [aut, cre] (ORCID: ), Posit Software, PBC [cph, fnd] (ROR: )", "Maintainer": "Jennifer Bryan ", "Repository": "CRAN" }, "gridExtra": { "Package": "gridExtra", "Version": "2.3.1", "Source": "Repository", "Authors@R": "c(person(\"Baptiste\", \"Auguie\", email = \"baptiste.auguie@vuw.ac.nz\", role = c(\"aut\", \"cre\")), person(\"Anton\", \"Antonov\", email = \"tonytonov@gmail.com\", role = c(\"ctb\")))", "License": "GPL (>= 2)", "Title": "Miscellaneous Functions for \"Grid\" Graphics", "Type": "Package", "Description": "Provides a number of user-level functions to work with \"grid\" graphics, notably to arrange multiple grid-based plots on a page, and draw tables.", "VignetteBuilder": "knitr", "Imports": [ "gtable", "grid", "grDevices", "graphics", "utils" ], "Suggests": [ "ggplot2", "egg", "lattice", "knitr", "testthat" ], "RoxygenNote": "6.0.1", "NeedsCompilation": "no", "Author": "Baptiste Auguie [aut, cre], Anton Antonov [ctb]", "Maintainer": "Baptiste Auguie ", "Repository": "CRAN" }, "gridtext": { "Package": "gridtext", "Version": "0.1.6", "Source": "Repository", "Type": "Package", "Title": "Improved Text Rendering Support for 'Grid' Graphics", "Authors@R": "c( person( given = \"Claus O.\", family = \"Wilke\", role = c(\"aut\"), email = \"wilke@austin.utexas.edu\", comment = c(ORCID = \"0000-0002-7470-9261\") ), person( given = \"Brenton M.\", family = \"Wiernik\", role = c(\"aut\", \"cre\"), email = \"brenton@wiernik.org\", comment = c(ORCID = \"0000-0001-9560-6336\", Twitter = \"@bmwiernik\") ) )", "Description": "Provides support for rendering of formatted text using 'grid' graphics. Text can be formatted via a minimal subset of 'Markdown', 'HTML', and inline 'CSS' directives, and it can be rendered both with and without word wrap.", "URL": "https://wilkelab.org/gridtext/", "BugReports": "https://github.com/wilkelab/gridtext/issues", "License": "MIT + file LICENSE", "Depends": [ "R (>= 3.5)" ], "Imports": [ "curl", "grid", "grDevices", "markdown", "rlang", "Rcpp", "png", "jpeg", "stringr", "xml2" ], "Suggests": [ "covr", "knitr", "rmarkdown", "testthat", "vdiffr" ], "LinkingTo": [ "Rcpp" ], "Encoding": "UTF-8", "RoxygenNote": "7.1.1", "NeedsCompilation": "yes", "Author": "Claus O. Wilke [aut] (ORCID: ), Brenton M. Wiernik [aut, cre] (ORCID: , Twitter: @bmwiernik)", "Maintainer": "Brenton M. Wiernik ", "Repository": "CRAN" }, "gt": { "Package": "gt", "Version": "1.3.0", "Source": "Repository", "Type": "Package", "Title": "Easily Create Presentation-Ready Display Tables", "Authors@R": "c( person(\"Richard\", \"Iannone\", , \"rich@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-3925-190X\")), person(\"Joe\", \"Cheng\", , \"joe@posit.co\", role = \"aut\"), person(\"Barret\", \"Schloerke\", , \"barret@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0001-9986-114X\")), person(\"Shannon\", \"Haughton\", , \"shannon.l.haughton@gsk.com\", role = \"aut\"), person(\"Ellis\", \"Hughes\", , \"ellis.h.hughes@gsk.com\", role = \"aut\", comment = c(ORCID = \"0000-0003-0637-4436\")), person(\"Alexandra\", \"Lauer\", , \"alexandralauer1@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0002-4191-6301\")), person(\"Romain\", \"François\", , \"romain@tada.science\", role = \"aut\"), person(\"JooYoung\", \"Seo\", , \"jseo1005@illinois.edu\", role = \"aut\", comment = c(ORCID = \"0000-0002-4064-6012\")), person(\"Ken\", \"Brevoort\", , \"ken@brevoort.com\", role = \"aut\", comment = c(ORCID = \"0000-0002-4001-8358\")), person(\"Olivier\", \"Roy\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", "Description": "Build display tables from tabular data with an easy-to-use set of functions. With its progressive approach, we can construct display tables with a cohesive set of table parts. Table values can be formatted using any of the included formatting functions. Footnotes and cell styles can be precisely added through a location targeting system. The way in which 'gt' handles things for you means that you don't often have to worry about the fine details.", "License": "MIT + file LICENSE", "URL": "https://gt.rstudio.com, https://github.com/rstudio/gt", "BugReports": "https://github.com/rstudio/gt/issues", "Depends": [ "R (>= 4.1.0)" ], "Imports": [ "base64enc (>= 0.1-3)", "bigD (>= 0.2)", "bitops (>= 1.0-7)", "cli (>= 3.6.3)", "commonmark (>= 1.9.1)", "dplyr (>= 1.1.4)", "fs (>= 1.6.4)", "glue (>= 1.8.0)", "htmltools (>= 0.5.8.1)", "htmlwidgets (>= 1.6.4)", "juicyjuice (>= 0.1.0)", "magrittr (>= 2.0.3)", "markdown (>= 1.13)", "reactable (>= 0.4.4)", "rlang (>= 1.1.4)", "sass (>= 0.4.9)", "scales (>= 1.3.0)", "tidyselect (>= 1.2.1)", "vctrs", "xml2 (>= 1.3.6)" ], "Suggests": [ "bit64", "farver", "fontawesome (>= 0.5.2)", "ggplot2", "grid", "gtable (>= 0.3.6)", "katex (>= 1.4.1)", "knitr", "lubridate", "magick", "paletteer", "RColorBrewer", "rmarkdown (>= 2.20)", "rsvg", "rvest", "shiny (>= 1.9.1)", "testthat (>= 3.1.9)", "tidyr (>= 1.0.0)", "webshot2 (>= 0.1.0)", "withr" ], "Config/Needs/coverage": "officer", "Config/Needs/website": "quarto", "ByteCompile": "true", "Config/testthat/edition": "3", "Config/testthat/parallel": "true", "Encoding": "UTF-8", "LazyData": "true", "RoxygenNote": "7.3.3", "NeedsCompilation": "no", "Author": "Richard Iannone [aut, cre] (ORCID: ), Joe Cheng [aut], Barret Schloerke [aut] (ORCID: ), Shannon Haughton [aut], Ellis Hughes [aut] (ORCID: ), Alexandra Lauer [aut] (ORCID: ), Romain François [aut], JooYoung Seo [aut] (ORCID: ), Ken Brevoort [aut] (ORCID: ), Olivier Roy [aut], Posit Software, PBC [cph, fnd]", "Maintainer": "Richard Iannone ", "Repository": "CRAN" }, "gtExtras": { "Package": "gtExtras", "Version": "0.6.2", "Source": "Repository", "Type": "Package", "Title": "Extending 'gt' for Beautiful HTML Tables", "Authors@R": "c( person(\"Thomas\", \"Mock\", , \"j.thomasmock@gmail.com\", role = c(\"aut\", \"cre\", \"cph\")), person(\"Daniel D.\", \"Sjoberg\", , \"danield.sjoberg@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0003-0862-2018\")) )", "Description": "Provides additional functions for creating beautiful tables with 'gt'. The functions are generally wrappers around boilerplate or adding opinionated niche capabilities and helpers functions.", "License": "MIT + file LICENSE", "URL": "https://github.com/jthomasmock/gtExtras, https://jthomasmock.github.io/gtExtras/", "BugReports": "https://github.com/jthomasmock/gtExtras/issues", "Depends": [ "R (>= 3.6.0)", "gt (>= 1.0.0)" ], "Imports": [ "commonmark", "dplyr (>= 1.0.9)", "fontawesome (>= 0.4.0)", "ggplot2 (>= 3.4.0)", "glue (>= 1.6.1)", "htmltools (>= 0.5.3)", "paletteer (>= 1.4.0)", "rlang (>= 1.0.4)", "scales (>= 1.2.0)", "knitr (>= 1.35)", "cli (>= 3.6.0)" ], "Suggests": [ "base64enc (>= 0.1-3)", "bitops (>= 1.0.6)", "covr", "fs (>= 1.5.2)", "hms", "magrittr (>= 1.5)", "rvest (>= 1.0.3)", "sass (>= 0.1.1)", "stringr (>= 1.3.1)", "svglite (>= 2.1.0)", "testthat (>= 3.0.0)", "tibble (>= 3.0.0)", "tidyr (>= 1.0.0)", "tidyselect (>= 1.0.0)", "webshot2 (>= 0.1.0)", "xml2 (>= 1.3.3)", "lifecycle (>= 1.0.0)" ], "Encoding": "UTF-8", "RoxygenNote": "7.3.3", "Config/testthat/edition": "3", "Config/testthat/parallel": "true", "NeedsCompilation": "no", "Author": "Thomas Mock [aut, cre, cph], Daniel D. Sjoberg [ctb] (ORCID: )", "Maintainer": "Thomas Mock ", "Repository": "CRAN" }, "gtable": { "Package": "gtable", "Version": "0.3.6", "Source": "Repository", "Title": "Arrange 'Grobs' in Tables", "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", "Description": "Tools to make it easier to work with \"tables\" of 'grobs'. The 'gtable' package defines a 'gtable' grob class that specifies a grid along with a list of grobs and their placement in the grid. Further the package makes it easy to manipulate and combine 'gtable' objects so that complex compositions can be built up sequentially.", "License": "MIT + file LICENSE", "URL": "https://gtable.r-lib.org, https://github.com/r-lib/gtable", "BugReports": "https://github.com/r-lib/gtable/issues", "Depends": [ "R (>= 4.0)" ], "Imports": [ "cli", "glue", "grid", "lifecycle", "rlang (>= 1.1.0)", "stats" ], "Suggests": [ "covr", "ggplot2", "knitr", "profvis", "rmarkdown", "testthat (>= 3.0.0)" ], "VignetteBuilder": "knitr", "Config/Needs/website": "tidyverse/tidytemplate", "Config/testthat/edition": "3", "Config/usethis/last-upkeep": "2024-10-25", "Encoding": "UTF-8", "RoxygenNote": "7.3.2", "NeedsCompilation": "no", "Author": "Hadley Wickham [aut], Thomas Lin Pedersen [aut, cre], Posit Software, PBC [cph, fnd]", "Maintainer": "Thomas Lin Pedersen ", "Repository": "CRAN" }, "here": { "Package": "here", "Version": "1.0.2", "Source": "Repository", "Title": "A Simpler Way to Find Your Files", "Date": "2025-09-06", "Authors@R": "c(person(given = \"Kirill\", family = \"M\\u00fcller\", role = c(\"aut\", \"cre\"), email = \"kirill@cynkra.com\", comment = c(ORCID = \"0000-0002-1416-3412\")), person(given = \"Jennifer\", family = \"Bryan\", role = \"ctb\", email = \"jenny@rstudio.com\", comment = c(ORCID = \"0000-0002-6983-2759\")))", "Description": "Constructs paths to your project's files. Declare the relative path of a file within your project with 'i_am()'. Use the 'here()' function as a drop-in replacement for 'file.path()', it will always locate the files relative to your project root.", "License": "MIT + file LICENSE", "URL": "https://here.r-lib.org/, https://github.com/r-lib/here", "BugReports": "https://github.com/r-lib/here/issues", "Imports": [ "rprojroot (>= 2.1.0)" ], "Suggests": [ "conflicted", "covr", "fs", "knitr", "palmerpenguins", "plyr", "readr", "rlang", "rmarkdown", "testthat", "uuid", "withr" ], "VignetteBuilder": "knitr", "Encoding": "UTF-8", "RoxygenNote": "7.3.3.9000", "Config/testthat/edition": "3", "Config/Needs/website": "tidyverse/tidytemplate", "NeedsCompilation": "no", "Author": "Kirill Müller [aut, cre] (ORCID: ), Jennifer Bryan [ctb] (ORCID: )", "Maintainer": "Kirill Müller ", "Repository": "CRAN" }, "highr": { "Package": "highr", "Version": "0.12", "Source": "Repository", "Type": "Package", "Title": "Syntax Highlighting for R Source Code", "Authors@R": "c( person(\"Yihui\", \"Xie\", role = c(\"aut\", \"cre\"), email = \"xie@yihui.name\", comment = c(ORCID = \"0000-0003-0645-5666\")), person(\"Yixuan\", \"Qiu\", role = \"aut\"), person(\"Christopher\", \"Gandrud\", role = \"ctb\"), person(\"Qiang\", \"Li\", role = \"ctb\") )", "Description": "Provides syntax highlighting for R source code. Currently it supports LaTeX and HTML output. Source code of other languages is supported via Andre Simon's highlight package ().", "Depends": [ "R (>= 3.3.0)" ], "Imports": [ "xfun (>= 0.18)" ], "Suggests": [ "knitr", "markdown", "testit" ], "License": "GPL", "URL": "https://github.com/yihui/highr", "BugReports": "https://github.com/yihui/highr/issues", "VignetteBuilder": "knitr", "Encoding": "UTF-8", "RoxygenNote": "7.3.3", "NeedsCompilation": "no", "Author": "Yihui Xie [aut, cre] (ORCID: ), Yixuan Qiu [aut], Christopher Gandrud [ctb], Qiang Li [ctb]", "Maintainer": "Yihui Xie ", "Repository": "CRAN" }, "hms": { "Package": "hms", "Version": "1.1.4", "Source": "Repository", "Title": "Pretty Time of Day", "Date": "2025-10-11", "Authors@R": "c( person(\"Kirill\", \"Müller\", , \"kirill@cynkra.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-1416-3412\")), person(\"R Consortium\", role = \"fnd\"), person(\"Posit Software, PBC\", role = \"fnd\", comment = c(ROR = \"03wc8by49\")) )", "Description": "Implements an S3 class for storing and formatting time-of-day values, based on the 'difftime' class.", "License": "MIT + file LICENSE", "URL": "https://hms.tidyverse.org/, https://github.com/tidyverse/hms", "BugReports": "https://github.com/tidyverse/hms/issues", "Imports": [ "cli", "lifecycle", "methods", "pkgconfig", "rlang (>= 1.0.2)", "vctrs (>= 0.3.8)" ], "Suggests": [ "crayon", "lubridate", "pillar (>= 1.1.0)", "testthat (>= 3.0.0)" ], "Config/Needs/website": "tidyverse/tidytemplate", "Config/testthat/edition": "3", "Encoding": "UTF-8", "RoxygenNote": "7.3.3.9000", "NeedsCompilation": "no", "Author": "Kirill Müller [aut, cre] (ORCID: ), R Consortium [fnd], Posit Software, PBC [fnd] (ROR: )", "Maintainer": "Kirill Müller ", "Repository": "CRAN" }, "htmltools": { "Package": "htmltools", "Version": "0.5.9", "Source": "Repository", "Type": "Package", "Title": "Tools for HTML", "Authors@R": "c( person(\"Joe\", \"Cheng\", , \"joe@posit.co\", role = \"aut\"), person(\"Carson\", \"Sievert\", , \"carson@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-4958-2844\")), person(\"Barret\", \"Schloerke\", , \"barret@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0001-9986-114X\")), person(\"Winston\", \"Chang\", , \"winston@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0002-1576-2126\")), person(\"Yihui\", \"Xie\", , \"yihui@posit.co\", role = \"aut\"), person(\"Jeff\", \"Allen\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", "Description": "Tools for HTML generation and output.", "License": "GPL (>= 2)", "URL": "https://github.com/rstudio/htmltools, https://rstudio.github.io/htmltools/", "BugReports": "https://github.com/rstudio/htmltools/issues", "Depends": [ "R (>= 2.14.1)" ], "Imports": [ "base64enc", "digest", "fastmap (>= 1.1.0)", "grDevices", "rlang (>= 1.0.0)", "utils" ], "Suggests": [ "Cairo", "markdown", "ragg", "shiny", "testthat", "withr" ], "Enhances": [ "knitr" ], "Config/Needs/check": "knitr", "Config/Needs/website": "rstudio/quillt, bench", "Encoding": "UTF-8", "RoxygenNote": "7.3.3", "Collate": "'colors.R' 'fill.R' 'html_dependency.R' 'html_escape.R' 'html_print.R' 'htmltools-package.R' 'images.R' 'known_tags.R' 'selector.R' 'staticimports.R' 'tag_query.R' 'utils.R' 'tags.R' 'template.R'", "NeedsCompilation": "yes", "Author": "Joe Cheng [aut], Carson Sievert [aut, cre] (ORCID: ), Barret Schloerke [aut] (ORCID: ), Winston Chang [aut] (ORCID: ), Yihui Xie [aut], Jeff Allen [aut], Posit Software, PBC [cph, fnd]", "Maintainer": "Carson Sievert ", "Repository": "CRAN" }, "htmlwidgets": { "Package": "htmlwidgets", "Version": "1.6.4", "Source": "Repository", "Type": "Package", "Title": "HTML Widgets for R", "Authors@R": "c( person(\"Ramnath\", \"Vaidyanathan\", role = c(\"aut\", \"cph\")), person(\"Yihui\", \"Xie\", role = \"aut\"), person(\"JJ\", \"Allaire\", role = \"aut\"), person(\"Joe\", \"Cheng\", , \"joe@posit.co\", role = \"aut\"), person(\"Carson\", \"Sievert\", , \"carson@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-4958-2844\")), person(\"Kenton\", \"Russell\", role = c(\"aut\", \"cph\")), person(\"Ellis\", \"Hughes\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", "Description": "A framework for creating HTML widgets that render in various contexts including the R console, 'R Markdown' documents, and 'Shiny' web applications.", "License": "MIT + file LICENSE", "URL": "https://github.com/ramnathv/htmlwidgets", "BugReports": "https://github.com/ramnathv/htmlwidgets/issues", "Imports": [ "grDevices", "htmltools (>= 0.5.7)", "jsonlite (>= 0.9.16)", "knitr (>= 1.8)", "rmarkdown", "yaml" ], "Suggests": [ "testthat" ], "Enhances": [ "shiny (>= 1.1)" ], "VignetteBuilder": "knitr", "Encoding": "UTF-8", "RoxygenNote": "7.2.3", "NeedsCompilation": "no", "Author": "Ramnath Vaidyanathan [aut, cph], Yihui Xie [aut], JJ Allaire [aut], Joe Cheng [aut], Carson Sievert [aut, cre] (), Kenton Russell [aut, cph], Ellis Hughes [ctb], Posit Software, PBC [cph, fnd]", "Maintainer": "Carson Sievert ", "Repository": "CRAN" }, "httpuv": { "Package": "httpuv", "Version": "1.6.17", "Source": "Repository", "Type": "Package", "Title": "HTTP and WebSocket Server Library", "Authors@R": "c( person(\"Joe\", \"Cheng\", , \"joe@posit.co\", role = \"aut\"), person(\"Winston\", \"Chang\", , \"winston@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")), person(\"Hector\", \"Corrada Bravo\", role = \"ctb\"), person(\"Jeroen\", \"Ooms\", role = \"ctb\"), person(\"Andrzej\", \"Krzemienski\", role = \"cph\", comment = \"optional.hpp\"), person(\"libuv project contributors\", role = \"cph\", comment = \"libuv library, see src/libuv/AUTHORS file\"), person(\"Joyent, Inc. and other Node contributors\", role = \"cph\", comment = \"libuv library, see src/libuv/AUTHORS file; and http-parser library, see src/http-parser/AUTHORS file\"), person(\"Niels\", \"Provos\", role = \"cph\", comment = \"libuv subcomponent: tree.h\"), person(\"Internet Systems Consortium, Inc.\", role = \"cph\", comment = \"libuv subcomponent: inet_pton and inet_ntop, contained in src/libuv/src/inet.c\"), person(\"Alexander\", \"Chemeris\", role = \"cph\", comment = \"libuv subcomponent: stdint-msvc2008.h (from msinttypes)\"), person(\"Google, Inc.\", role = \"cph\", comment = \"libuv subcomponent: pthread-fixes.c\"), person(\"Sony Mobile Communcations AB\", role = \"cph\", comment = \"libuv subcomponent: pthread-fixes.c\"), person(\"Berkeley Software Design Inc.\", role = \"cph\", comment = \"libuv subcomponent: android-ifaddrs.h, android-ifaddrs.c\"), person(\"Kenneth\", \"MacKay\", role = \"cph\", comment = \"libuv subcomponent: android-ifaddrs.h, android-ifaddrs.c\"), person(\"Emergya (Cloud4all, FP7/2007-2013, grant agreement no 289016)\", role = \"cph\", comment = \"libuv subcomponent: android-ifaddrs.h, android-ifaddrs.c\"), person(\"Steve\", \"Reid\", role = \"aut\", comment = \"SHA-1 implementation\"), person(\"James\", \"Brown\", role = \"aut\", comment = \"SHA-1 implementation\"), person(\"Bob\", \"Trower\", role = \"aut\", comment = \"base64 implementation\"), person(\"Alexander\", \"Peslyak\", role = \"aut\", comment = \"MD5 implementation\"), person(\"Trantor Standard Systems\", role = \"cph\", comment = \"base64 implementation\"), person(\"Igor\", \"Sysoev\", role = \"cph\", comment = \"http-parser\") )", "Description": "Provides low-level socket and protocol support for handling HTTP and WebSocket requests directly from within R. It is primarily intended as a building block for other packages, rather than making it particularly easy to create complete web applications using httpuv alone. httpuv is built on top of the libuv and http-parser C libraries, both of which were developed by Joyent, Inc. (See LICENSE file for libuv and http-parser license information.)", "License": "GPL (>= 2) | file LICENSE", "URL": "https://rstudio.github.io/httpuv/, https://github.com/rstudio/httpuv", "BugReports": "https://github.com/rstudio/httpuv/issues", "Depends": [ "R (>= 2.15.1)" ], "Imports": [ "later (>= 0.8.0)", "promises", "R6", "Rcpp (>= 1.0.7)", "utils" ], "Suggests": [ "callr", "curl", "jsonlite", "testthat (>= 3.0.0)", "websocket" ], "LinkingTo": [ "later", "Rcpp" ], "Config/Needs/website": "tidyverse/tidytemplate", "Config/testthat/edition": "3", "Config/usethis/last-upkeep": "2025-07-01", "Encoding": "UTF-8", "RoxygenNote": "7.3.3", "SystemRequirements": "GNU make, zlib", "Collate": "'RcppExports.R' 'httpuv-package.R' 'httpuv.R' 'random_port.R' 'server.R' 'staticServer.R' 'static_paths.R' 'utils.R'", "NeedsCompilation": "yes", "Author": "Joe Cheng [aut], Winston Chang [aut, cre], Posit, PBC [cph, fnd] (ROR: ), Hector Corrada Bravo [ctb], Jeroen Ooms [ctb], Andrzej Krzemienski [cph] (optional.hpp), libuv project contributors [cph] (libuv library, see src/libuv/AUTHORS file), Joyent, Inc. and other Node contributors [cph] (libuv library, see src/libuv/AUTHORS file; and http-parser library, see src/http-parser/AUTHORS file), Niels Provos [cph] (libuv subcomponent: tree.h), Internet Systems Consortium, Inc. [cph] (libuv subcomponent: inet_pton and inet_ntop, contained in src/libuv/src/inet.c), Alexander Chemeris [cph] (libuv subcomponent: stdint-msvc2008.h (from msinttypes)), Google, Inc. [cph] (libuv subcomponent: pthread-fixes.c), Sony Mobile Communcations AB [cph] (libuv subcomponent: pthread-fixes.c), Berkeley Software Design Inc. [cph] (libuv subcomponent: android-ifaddrs.h, android-ifaddrs.c), Kenneth MacKay [cph] (libuv subcomponent: android-ifaddrs.h, android-ifaddrs.c), Emergya (Cloud4all, FP7/2007-2013, grant agreement no 289016) [cph] (libuv subcomponent: android-ifaddrs.h, android-ifaddrs.c), Steve Reid [aut] (SHA-1 implementation), James Brown [aut] (SHA-1 implementation), Bob Trower [aut] (base64 implementation), Alexander Peslyak [aut] (MD5 implementation), Trantor Standard Systems [cph] (base64 implementation), Igor Sysoev [cph] (http-parser)", "Maintainer": "Winston Chang ", "Repository": "CRAN" }, "httr": { "Package": "httr", "Version": "1.4.9", "Source": "Repository", "Title": "Tools for Working with URLs and HTTP", "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", "Description": "Useful tools for working with HTTP organised by HTTP verbs (GET(), POST(), etc). Configuration functions make it easy to control additional request components (authenticate(), add_headers() and so on).", "License": "MIT + file LICENSE", "URL": "https://httr.r-lib.org/, https://github.com/r-lib/httr", "BugReports": "https://github.com/r-lib/httr/issues", "Depends": [ "R (>= 3.6)" ], "Imports": [ "curl (>= 5.1.0)", "jsonlite", "mime", "openssl (>= 0.8)", "R6" ], "Suggests": [ "covr", "httpuv", "jpeg", "knitr", "png", "readr", "rmarkdown", "testthat (>= 0.8.0)", "xml2" ], "VignetteBuilder": "knitr", "Config/Needs/website": "tidyverse/tidytemplate", "Config/roxygen2/version": "8.1.0", "Encoding": "UTF-8", "NeedsCompilation": "no", "Author": "Hadley Wickham [aut, cre], Posit Software, PBC [cph, fnd]", "Maintainer": "Hadley Wickham ", "Repository": "CRAN" }, "httr2": { "Package": "httr2", "Version": "1.3.0", "Source": "Repository", "Title": "Perform HTTP Requests and Process the Responses", "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"Maximilian\", \"Girlich\", role = \"ctb\") )", "Description": "Tools for creating and modifying HTTP requests, then performing them and processing the results. 'httr2' is a modern re-imagining of 'httr' that uses a pipe-based interface and solves more of the problems that API wrapping packages face.", "License": "MIT + file LICENSE", "URL": "https://httr2.r-lib.org, https://github.com/r-lib/httr2", "BugReports": "https://github.com/r-lib/httr2/issues", "Depends": [ "R (>= 4.1)" ], "Imports": [ "cli (>= 3.0.0)", "curl (>= 6.4.0)", "glue", "lifecycle", "magrittr", "openssl", "R6", "rlang (>= 1.3.0)", "vctrs (>= 0.6.3)", "withr" ], "Suggests": [ "askpass", "bench", "clipr", "covr", "digest", "docopt", "httpuv", "jose", "jsonlite", "knitr", "later (>= 1.4.0)", "nanonext", "otel (>= 0.2.0)", "otelsdk (>= 0.2.0)", "paws.common (>= 0.8.0)", "promises", "rappdirs", "rmarkdown", "testthat (>= 3.1.8)", "tibble", "webfakes (>= 1.4.0)", "xml2" ], "VignetteBuilder": "knitr", "Config/Needs/website": "tidyverse/tidytemplate", "Config/roxygen2/version": "8.0.0", "Config/testthat/edition": "3", "Config/testthat/parallel": "true", "Config/testthat/start-first": "resp-stream, req-perform", "Encoding": "UTF-8", "NeedsCompilation": "no", "Author": "Hadley Wickham [aut, cre], Posit Software, PBC [cph, fnd], Maximilian Girlich [ctb]", "Maintainer": "Hadley Wickham ", "Repository": "CRAN" }, "igraph": { "Package": "igraph", "Version": "2.3.3", "Source": "Repository", "Title": "Network Analysis and Visualization", "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0001-7098-9676\")), person(\"Tamás\", \"Nepusz\", , \"ntamas@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0002-1451-338X\")), person(\"Vincent\", \"Traag\", role = \"aut\", comment = c(ORCID = \"0000-0003-3170-3879\")), person(\"Szabolcs\", \"Horvát\", , \"szhorvat@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0002-3100-523X\")), person(\"Fabio\", \"Zanini\", , \"fabio.zanini@unsw.edu.au\", role = \"aut\", comment = c(ORCID = \"0000-0001-7097-8539\")), person(\"Daniel\", \"Noom\", role = \"aut\"), person(\"Kirill\", \"Müller\", , \"kirill@cynkra.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-1416-3412\")), person(\"Michael\", \"Antonov\", role = \"ctb\"), person(\"Chan Zuckerberg Initiative\", role = \"fnd\", comment = c(ROR = \"02qenvm24\")), person(\"David\", \"Schoch\", , \"david.schoch@cynkra.com\", role = \"aut\", comment = c(ORCID = \"0000-0003-2952-4812\")), person(\"Maëlle\", \"Salmon\", , \"maelle@cynkra.com\", role = \"aut\", comment = c(ORCID = \"0000-0002-2815-0399\")), person(\"R Consortium\", role = \"fnd\", comment = c(ROR = \"01z833950\")) )", "Description": "Routines for simple graphs and network analysis. It can handle large graphs very well and provides functions for generating random and regular graphs, graph visualization, centrality methods and much more.", "License": "GPL (>= 2)", "URL": "https://r.igraph.org/, https://igraph.org/, https://igraph.discourse.group/", "BugReports": "https://github.com/igraph/rigraph/issues", "Depends": [ "methods", "R (>= 3.5.0)" ], "Imports": [ "cli", "graphics", "grDevices", "lifecycle", "magrittr", "Matrix", "pkgconfig (>= 2.0.0)", "rlang (>= 1.1.0)", "stats", "utils", "vctrs" ], "Suggests": [ "ape (>= 5.7-0.1)", "callr", "decor", "digest", "igraphdata", "knitr", "rgl (>= 1.3.14)", "rmarkdown", "scales", "stats4", "tcltk", "testthat", "vdiffr", "withr" ], "Enhances": [ "graph" ], "LinkingTo": [ "cpp11 (>= 0.5.0)" ], "VignetteBuilder": "knitr", "Config/build/compilation-database": "false", "Config/build/never-clean": "true", "Config/comment/compilation-database": "Generate manually with pkgload:::generate_db() for faster pkgload::load_all()", "Config/Needs/build": "devtools, irlba, pkgconfig", "Config/Needs/coverage": "covr", "Config/Needs/roxygen2": "r-lib/roxygen2, igraph/igraph.r2cdocs, moodymudskipper/devtag", "Config/Needs/website": "here, readr, tibble, xmlparsedata, xml2", "Config/testthat/edition": "3", "Config/testthat/parallel": "true", "Config/testthat/start-first": "aaa-auto, vs-es, scan, vs-operators, weakref, watts.strogatz.game", "Encoding": "UTF-8", "RoxygenNote": "7.3.3.9000", "SystemRequirements": "libxml2 (optional), glpk (>= 4.57, optional)", "NeedsCompilation": "yes", "Author": "Gábor Csárdi [aut] (ORCID: ), Tamás Nepusz [aut] (ORCID: ), Vincent Traag [aut] (ORCID: ), Szabolcs Horvát [aut] (ORCID: ), Fabio Zanini [aut] (ORCID: ), Daniel Noom [aut], Kirill Müller [aut, cre] (ORCID: ), Michael Antonov [ctb], Chan Zuckerberg Initiative [fnd] (ROR: ), David Schoch [aut] (ORCID: ), Maëlle Salmon [aut] (ORCID: ), R Consortium [fnd] (ROR: )", "Maintainer": "Kirill Müller ", "Repository": "CRAN" }, "isoband": { "Package": "isoband", "Version": "0.3.0", "Source": "Repository", "Title": "Generate Isolines and Isobands from Regularly Spaced Elevation Grids", "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Claus O.\", \"Wilke\", , \"wilke@austin.utexas.edu\", role = \"aut\", comment = c(\"Original author\", ORCID = \"0000-0002-7470-9261\")), person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-5147-4711\")), person(\"Posit, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", "Description": "A fast C++ implementation to generate contour lines (isolines) and contour polygons (isobands) from regularly spaced grids containing elevation data.", "License": "MIT + file LICENSE", "URL": "https://isoband.r-lib.org, https://github.com/r-lib/isoband", "BugReports": "https://github.com/r-lib/isoband/issues", "Imports": [ "cli", "grid", "rlang", "utils" ], "Suggests": [ "covr", "ggplot2", "knitr", "magick", "bench", "rmarkdown", "sf", "testthat (>= 3.0.0)", "xml2" ], "VignetteBuilder": "knitr", "Config/Needs/website": "tidyverse/tidytemplate", "Config/testthat/edition": "3", "Config/usethis/last-upkeep": "2025-12-05", "Encoding": "UTF-8", "RoxygenNote": "7.3.3", "Config/build/compilation-database": "true", "LinkingTo": [ "cpp11" ], "NeedsCompilation": "yes", "Author": "Hadley Wickham [aut] (ORCID: ), Claus O. Wilke [aut] (Original author, ORCID: ), Thomas Lin Pedersen [aut, cre] (ORCID: ), Posit, PBC [cph, fnd] (ROR: )", "Maintainer": "Thomas Lin Pedersen ", "Repository": "CRAN" }, "jose": { "Package": "jose", "Version": "2.0.0", "Source": "Repository", "Type": "Package", "Title": "JavaScript Object Signing and Encryption", "Authors@R": "person(\"Jeroen\", \"Ooms\", role = c(\"aut\", \"cre\"), email = \"jeroenooms@gmail.com\", comment = c(ORCID = \"0000-0002-4035-0289\"))", "Description": "Read and write JSON Web Keys (JWK, rfc7517), generate and verify JSON Web Signatures (JWS, rfc7515) and encode/decode JSON Web Tokens (JWT, rfc7519) . These standards provide modern signing and encryption formats that are natively supported by browsers via the JavaScript WebCryptoAPI , and used by services like OAuth 2.0, LetsEncrypt, and Github Apps.", "License": "MIT + file LICENSE", "URL": "https://r-lib.r-universe.dev/jose", "BugReports": "https://github.com/r-lib/jose/issues", "Depends": [ "openssl (>= 1.2.1)" ], "Imports": [ "jsonlite" ], "RoxygenNote": "7.3.3.9000", "VignetteBuilder": "knitr", "Suggests": [ "spelling", "testthat", "knitr", "rmarkdown" ], "Encoding": "UTF-8", "Language": "en-US", "NeedsCompilation": "no", "Author": "Jeroen Ooms [aut, cre] (ORCID: )", "Maintainer": "Jeroen Ooms ", "Repository": "CRAN" }, "jpeg": { "Package": "jpeg", "Version": "0.1-11", "Source": "Repository", "Title": "Read and write JPEG images", "Author": "Simon Urbanek [aut, cre, cph] (https://urbanek.org, )", "Authors@R": "person(\"Simon\", \"Urbanek\", role=c(\"aut\",\"cre\",\"cph\"), email=\"Simon.Urbanek@r-project.org\", comment=c(\"https://urbanek.org\", ORCID=\"0000-0003-2297-1732\"))", "Maintainer": "Simon Urbanek ", "Depends": [ "R (>= 2.9.0)" ], "Description": "This package provides an easy and simple way to read, write and display bitmap images stored in the JPEG format. It can read and write both files and in-memory raw vectors.", "License": "GPL-2 | GPL-3", "SystemRequirements": "libjpeg", "URL": "https://www.rforge.net/jpeg/", "BugReports": "https://github.com/s-u/jpeg/issues", "NeedsCompilation": "yes", "Repository": "CRAN" }, "jquerylib": { "Package": "jquerylib", "Version": "0.1.4", "Source": "Repository", "Title": "Obtain 'jQuery' as an HTML Dependency Object", "Authors@R": "c( person(\"Carson\", \"Sievert\", role = c(\"aut\", \"cre\"), email = \"carson@rstudio.com\", comment = c(ORCID = \"0000-0002-4958-2844\")), person(\"Joe\", \"Cheng\", role = \"aut\", email = \"joe@rstudio.com\"), person(family = \"RStudio\", role = \"cph\"), person(family = \"jQuery Foundation\", role = \"cph\", comment = \"jQuery library and jQuery UI library\"), person(family = \"jQuery contributors\", role = c(\"ctb\", \"cph\"), comment = \"jQuery library; authors listed in inst/lib/jquery-AUTHORS.txt\") )", "Description": "Obtain any major version of 'jQuery' () and use it in any webpage generated by 'htmltools' (e.g. 'shiny', 'htmlwidgets', and 'rmarkdown'). Most R users don't need to use this package directly, but other R packages (e.g. 'shiny', 'rmarkdown', etc.) depend on this package to avoid bundling redundant copies of 'jQuery'.", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "Config/testthat/edition": "3", "RoxygenNote": "7.0.2", "Imports": [ "htmltools" ], "Suggests": [ "testthat" ], "NeedsCompilation": "no", "Author": "Carson Sievert [aut, cre] (), Joe Cheng [aut], RStudio [cph], jQuery Foundation [cph] (jQuery library and jQuery UI library), jQuery contributors [ctb, cph] (jQuery library; authors listed in inst/lib/jquery-AUTHORS.txt)", "Maintainer": "Carson Sievert ", "Repository": "CRAN" }, "jsonlite": { "Package": "jsonlite", "Version": "2.0.0", "Source": "Repository", "Title": "A Simple and Robust JSON Parser and Generator for R", "License": "MIT + file LICENSE", "Depends": [ "methods" ], "Authors@R": "c( person(\"Jeroen\", \"Ooms\", role = c(\"aut\", \"cre\"), email = \"jeroenooms@gmail.com\", comment = c(ORCID = \"0000-0002-4035-0289\")), person(\"Duncan\", \"Temple Lang\", role = \"ctb\"), person(\"Lloyd\", \"Hilaiel\", role = \"cph\", comment=\"author of bundled libyajl\"))", "URL": "https://jeroen.r-universe.dev/jsonlite https://arxiv.org/abs/1403.2805", "BugReports": "https://github.com/jeroen/jsonlite/issues", "Maintainer": "Jeroen Ooms ", "VignetteBuilder": "knitr, R.rsp", "Description": "A reasonably fast JSON parser and generator, optimized for statistical data and the web. Offers simple, flexible tools for working with JSON in R, and is particularly powerful for building pipelines and interacting with a web API. The implementation is based on the mapping described in the vignette (Ooms, 2014). In addition to converting JSON data from/to R objects, 'jsonlite' contains functions to stream, validate, and prettify JSON data. The unit tests included with the package verify that all edge cases are encoded and decoded consistently for use with dynamic data in systems and applications.", "Suggests": [ "httr", "vctrs", "testthat", "knitr", "rmarkdown", "R.rsp", "sf" ], "RoxygenNote": "7.3.2", "Encoding": "UTF-8", "NeedsCompilation": "yes", "Author": "Jeroen Ooms [aut, cre] (), Duncan Temple Lang [ctb], Lloyd Hilaiel [cph] (author of bundled libyajl)", "Repository": "CRAN" }, "jsonvalidate": { "Package": "jsonvalidate", "Version": "1.5.0", "Source": "Repository", "Title": "Validate 'JSON' Schema", "Authors@R": "c(person(\"Rich\", \"FitzJohn\", role = c(\"aut\", \"cre\"), email = \"rich.fitzjohn@gmail.com\"), person(\"Rob\", \"Ashton\", role = \"aut\"), person(\"Alex\", \"Hill\", role = \"ctb\"), person(\"Alicia\", \"Schep\", role = \"ctb\"), person(\"Ian\", \"Lyttle\", role = \"ctb\"), person(\"Kara\", \"Woo\", role = \"ctb\"), person(\"Mathias\", \"Buus\", role = c(\"aut\", \"cph\"), comment = \"Author of bundled imjv library\"), person(\"Evgeny\", \"Poberezkin\", role = c(\"aut\", \"cph\"), comment = \"Author of bundled Ajv library\"))", "Maintainer": "Rich FitzJohn ", "Description": "Uses the node library 'is-my-json-valid' or 'ajv' to validate 'JSON' against a 'JSON' schema. Drafts 04, 06 and 07 of 'JSON' schema are supported.", "License": "MIT + file LICENSE", "URL": "https://docs.ropensci.org/jsonvalidate/, https://github.com/ropensci/jsonvalidate", "BugReports": "https://github.com/ropensci/jsonvalidate/issues", "Imports": [ "R6", "V8" ], "Suggests": [ "knitr", "jsonlite", "rmarkdown", "testthat", "withr" ], "RoxygenNote": "7.3.2", "VignetteBuilder": "knitr", "Encoding": "UTF-8", "Language": "en-GB", "Config/testthat/edition": "3", "NeedsCompilation": "no", "Author": "Rich FitzJohn [aut, cre], Rob Ashton [aut], Alex Hill [ctb], Alicia Schep [ctb], Ian Lyttle [ctb], Kara Woo [ctb], Mathias Buus [aut, cph] (Author of bundled imjv library), Evgeny Poberezkin [aut, cph] (Author of bundled Ajv library)", "Repository": "CRAN" }, "juicyjuice": { "Package": "juicyjuice", "Version": "0.1.0", "Source": "Repository", "Title": "Inline CSS Properties into HTML Tags Using 'juice'", "Authors@R": "c( person(\"Richard\", \"Iannone\", , \"riannone@me.com\", c(\"aut\", \"cre\", \"cph\"), comment = c(ORCID = \"0000-0003-3925-190X\")), person(\"Automattic\", role = c(\"cph\"), comment = \"juice library\"), person(\"juice contributors\", role = c(\"ctb\"), comment = \"juice library\") )", "Description": "There are occasions where you need a piece of HTML with integrated styles. A prime example of this is HTML email. This transformation involves moving the CSS and associated formatting instructions from the style block in the head of your document into the body of the HTML. Many prominent email clients require integrated styles in HTML email; otherwise a received HTML email will be displayed without any styling. This package will quickly and precisely perform these CSS transformations when given HTML text and it does so by using the JavaScript 'juice' library.", "License": "MIT + file LICENSE", "URL": "https://github.com/rich-iannone/juicyjuice", "BugReports": "https://github.com/rich-iannone/juicyjuice/issues", "Encoding": "UTF-8", "RoxygenNote": "7.2.1", "Imports": [ "V8 (>= 4.2.0)" ], "Suggests": [ "testthat (>= 3.0.0)" ], "Config/testthat/edition": "3", "NeedsCompilation": "no", "Author": "Richard Iannone [aut, cre, cph] (), Automattic [cph] (juice library), juice contributors [ctb] (juice library)", "Maintainer": "Richard Iannone ", "Repository": "CRAN" }, "kableExtra": { "Package": "kableExtra", "Version": "1.4.1", "Source": "Repository", "Type": "Package", "Title": "Construct Complex Table with 'kable' and Pipe Syntax", "Authors@R": "c( person('Hao', 'Zhu', email = 'haozhu233@gmail.com', role = c('aut', 'cre'), comment = c(ORCID = '0000-0002-3386-6076')), person('Thomas', 'Travison', role = 'ctb'), person('Timothy', 'Tsai', role = 'ctb'), person('Will', 'Beasley', email = 'wibeasley@hotmail.com', role = 'ctb'), person('Yihui', 'Xie', email = 'xie@yihui.name', role = 'ctb'), person('GuangChuang', 'Yu', email = 'guangchuangyu@gmail.com', role = 'ctb'), person('Stéphane', 'Laurent', role = 'ctb'), person('Rob', 'Shepherd', role = 'ctb'), person('Yoni', 'Sidi', role = 'ctb'), person('Brian', 'Salzer', role = 'ctb'), person('George', 'Gui', role = 'ctb'), person('Yeliang', 'Fan', role = 'ctb'), person('Duncan', 'Murdoch', role = 'ctb'), person('Vincent', 'Arel-Bundock', role = 'ctb'), person('Bill', 'Evans', role = 'ctb') )", "Description": "Build complex HTML or 'LaTeX' tables using 'kable()' from 'knitr' and the piping syntax from 'magrittr'. Function 'kable()' is a light weight table generator coming from 'knitr'. This package simplifies the way to manipulate the HTML or 'LaTeX' codes generated by 'kable()' and allows users to construct complex tables and customize styles using a readable syntax.", "License": "MIT + file LICENSE", "URL": "https://haozhu233.github.io/kableExtra/, https://github.com/haozhu233/kableExtra", "BugReports": "https://github.com/haozhu233/kableExtra/issues", "Depends": [ "R (>= 3.1.0)" ], "Imports": [ "knitr (>= 1.33)", "magrittr", "stringr (>= 1.0)", "xml2 (>= 1.1.1)", "rmarkdown (>= 1.6.0)", "scales", "viridisLite", "stats", "grDevices", "htmltools", "rstudioapi", "tools", "digest", "graphics", "svglite" ], "Suggests": [ "testthat", "magick", "tinytex", "formattable", "sparkline", "webshot2" ], "Config/testthat/edition": "3", "VignetteBuilder": "knitr", "Encoding": "UTF-8", "RoxygenNote": "7.3.2", "Language": "en-US", "NeedsCompilation": "no", "Author": "Hao Zhu [aut, cre] (ORCID: ), Thomas Travison [ctb], Timothy Tsai [ctb], Will Beasley [ctb], Yihui Xie [ctb], GuangChuang Yu [ctb], Stéphane Laurent [ctb], Rob Shepherd [ctb], Yoni Sidi [ctb], Brian Salzer [ctb], George Gui [ctb], Yeliang Fan [ctb], Duncan Murdoch [ctb], Vincent Arel-Bundock [ctb], Bill Evans [ctb]", "Maintainer": "Hao Zhu ", "Repository": "CRAN" }, "keyring": { "Package": "keyring", "Version": "1.4.1", "Source": "Repository", "Title": "Access the System Credential Store from R", "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Alec\", \"Wong\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", "Description": "Platform independent 'API' to access the operating system's credential store. Currently supports: 'Keychain' on 'macOS', Credential Store on 'Windows', the Secret Service 'API' on 'Linux', and simple, platform independent stores implemented with environment variables or encrypted files. Additional storage back-ends can be added easily.", "License": "MIT + file LICENSE", "URL": "https://keyring.r-lib.org/, https://github.com/r-lib/keyring", "BugReports": "https://github.com/r-lib/keyring/issues", "Depends": [ "R (>= 3.5)" ], "Imports": [ "askpass", "filelock", "R6", "tools", "utils", "yaml" ], "Suggests": [ "callr", "covr", "openssl", "testthat (>= 3.0.0)", "withr" ], "Biarch": "true", "Config/Needs/website": "tidyverse/tidytemplate", "Config/testthat/edition": "3", "Config/usethis/last-upkeep": "2025-04-30", "Encoding": "UTF-8", "RoxygenNote": "7.3.2.9000", "SystemRequirements": "Optional: libsecret on Linux (libsecret-1-dev on Debian/Ubuntu, libsecret-devel on Fedora/CentOS)", "NeedsCompilation": "yes", "Author": "Gábor Csárdi [aut, cre], Alec Wong [ctb], Posit Software, PBC [cph, fnd] (ROR: )", "Maintainer": "Gábor Csárdi ", "Repository": "CRAN" }, "knitr": { "Package": "knitr", "Version": "1.52", "Source": "Repository", "Type": "Package", "Title": "A General-Purpose Package for Dynamic Report Generation in R", "Authors@R": "c( person(\"Yihui\", \"Xie\", role = c(\"aut\", \"cre\"), email = \"xie@yihui.name\", comment = c(ORCID = \"0000-0003-0645-5666\", URL = \"https://yihui.org\")), person(\"Abhraneel\", \"Sarma\", role = \"ctb\"), person(\"Adam\", \"Vogt\", role = \"ctb\"), person(\"Alastair\", \"Andrew\", role = \"ctb\"), person(\"Alex\", \"Zvoleff\", role = \"ctb\"), person(\"Amar\", \"Al-Zubaidi\", role = \"ctb\"), person(\"Andre\", \"Simon\", role = \"ctb\", comment = \"the CSS files under inst/themes/ were derived from the Highlight package http://www.andre-simon.de\"), person(\"Aron\", \"Atkins\", role = \"ctb\"), person(\"Aaron\", \"Wolen\", role = \"ctb\"), person(\"Ashley\", \"Manton\", role = \"ctb\"), person(\"Atsushi\", \"Yasumoto\", role = \"ctb\", comment = c(ORCID = \"0000-0002-8335-495X\")), person(\"Ben\", \"Baumer\", role = \"ctb\"), person(\"Brian\", \"Diggs\", role = \"ctb\"), person(\"Brian\", \"Zhang\", role = \"ctb\"), person(\"Bulat\", \"Yapparov\", role = \"ctb\"), person(\"Cassio\", \"Pereira\", role = \"ctb\"), person(\"Christophe\", \"Dervieux\", role = \"ctb\"), person(\"David\", \"Hall\", role = \"ctb\"), person(\"David\", \"Hugh-Jones\", role = \"ctb\"), person(\"David\", \"Robinson\", role = \"ctb\"), person(\"Doug\", \"Hemken\", role = \"ctb\"), person(\"Duncan\", \"Murdoch\", role = \"ctb\"), person(\"Elio\", \"Campitelli\", role = \"ctb\"), person(\"Ellis\", \"Hughes\", role = \"ctb\"), person(\"Emily\", \"Riederer\", role = \"ctb\"), person(\"Fabian\", \"Hirschmann\", role = \"ctb\"), person(\"Fitch\", \"Simeon\", role = \"ctb\"), person(\"Forest\", \"Fang\", role = \"ctb\"), person(c(\"Frank\", \"E\", \"Harrell\", \"Jr\"), role = \"ctb\", comment = \"the Sweavel package at inst/misc/Sweavel.sty\"), person(\"Garrick\", \"Aden-Buie\", role = \"ctb\"), person(\"Gregoire\", \"Detrez\", role = \"ctb\"), person(\"Hadley\", \"Wickham\", role = \"ctb\"), person(\"Hao\", \"Zhu\", role = \"ctb\"), person(\"Heewon\", \"Jeon\", role = \"ctb\"), person(\"Henrik\", \"Bengtsson\", role = \"ctb\"), person(\"Hiroaki\", \"Yutani\", role = \"ctb\"), person(\"Ian\", \"Lyttle\", role = \"ctb\"), person(\"Hodges\", \"Daniel\", role = \"ctb\"), person(\"Jacob\", \"Bien\", role = \"ctb\"), person(\"Jake\", \"Burkhead\", role = \"ctb\"), person(\"James\", \"Manton\", role = \"ctb\"), person(\"Jared\", \"Lander\", role = \"ctb\"), person(\"Jason\", \"Punyon\", role = \"ctb\"), person(\"Javier\", \"Luraschi\", role = \"ctb\"), person(\"Jeff\", \"Arnold\", role = \"ctb\"), person(\"Jenny\", \"Bryan\", role = \"ctb\"), person(\"Jeremy\", \"Ashkenas\", role = c(\"ctb\", \"cph\"), comment = \"the CSS file at inst/misc/docco-classic.css\"), person(\"Jeremy\", \"Stephens\", role = \"ctb\"), person(\"Jim\", \"Hester\", role = \"ctb\"), person(\"Joe\", \"Cheng\", role = \"ctb\"), person(\"Johan\", \"Larsson\", role = \"ctb\"), person(\"Johannes\", \"Ranke\", role = \"ctb\"), person(\"John\", \"Honaker\", role = \"ctb\"), person(\"John\", \"Muschelli\", role = \"ctb\"), person(\"Jonathan\", \"Keane\", role = \"ctb\"), person(\"JJ\", \"Allaire\", role = \"ctb\"), person(\"Johan\", \"Toloe\", role = \"ctb\"), person(\"Jonathan\", \"Sidi\", role = \"ctb\"), person(\"Joseph\", \"Larmarange\", role = \"ctb\"), person(\"Julien\", \"Barnier\", role = \"ctb\"), person(\"Kaiyin\", \"Zhong\", role = \"ctb\"), person(\"Kamil\", \"Slowikowski\", role = \"ctb\"), person(\"Karl\", \"Forner\", role = \"ctb\"), person(c(\"Kevin\", \"K.\"), \"Smith\", role = \"ctb\"), person(\"Kirill\", \"Mueller\", role = \"ctb\"), person(\"Kohske\", \"Takahashi\", role = \"ctb\"), person(\"Leonidas\", \"Zhak\", role = \"ctb\"), person(\"Lorenz\", \"Walthert\", role = \"ctb\"), person(\"Lucas\", \"Gallindo\", role = \"ctb\"), person(\"Marius\", \"Hofert\", role = \"ctb\"), person(\"Martin\", \"Modrák\", role = \"ctb\"), person(\"Michael\", \"Chirico\", role = \"ctb\"), person(\"Michael\", \"Friendly\", role = \"ctb\"), person(\"Michal\", \"Bojanowski\", role = \"ctb\"), person(\"Michel\", \"Kuhlmann\", role = \"ctb\"), person(\"Miller\", \"Patrick\", role = \"ctb\"), person(\"Nacho\", \"Caballero\", role = \"ctb\"), person(\"Nick\", \"Salkowski\", role = \"ctb\"), person(\"Niels Richard\", \"Hansen\", role = \"ctb\"), person(\"Noam\", \"Ross\", role = \"ctb\"), person(\"Obada\", \"Mahdi\", role = \"ctb\"), person(\"Pavel N.\", \"Krivitsky\", role = \"ctb\", comment=c(ORCID = \"0000-0002-9101-3362\")), person(\"Pedro\", \"Faria\", role = \"ctb\"), person(\"Qiang\", \"Li\", role = \"ctb\"), person(\"Ramnath\", \"Vaidyanathan\", role = \"ctb\"), person(\"Richard\", \"Cotton\", role = \"ctb\"), person(\"Robert\", \"Krzyzanowski\", role = \"ctb\"), person(\"Rodrigo\", \"Copetti\", role = \"ctb\"), person(\"Romain\", \"Francois\", role = \"ctb\"), person(\"Ruaridh\", \"Williamson\", role = \"ctb\"), person(\"Sagiru\", \"Mati\", role = \"ctb\", comment = c(ORCID = \"0000-0003-1413-3974\")), person(\"Scott\", \"Kostyshak\", role = \"ctb\"), person(\"Sebastian\", \"Meyer\", role = \"ctb\"), person(\"Sietse\", \"Brouwer\", role = \"ctb\"), person(c(\"Simon\", \"de\"), \"Bernard\", role = \"ctb\"), person(\"Sylvain\", \"Rousseau\", role = \"ctb\"), person(\"Taiyun\", \"Wei\", role = \"ctb\"), person(\"Thibaut\", \"Assus\", role = \"ctb\"), person(\"Thibaut\", \"Lamadon\", role = \"ctb\"), person(\"Thomas\", \"Leeper\", role = \"ctb\"), person(\"Tim\", \"Mastny\", role = \"ctb\"), person(\"Tom\", \"Torsney-Weir\", role = \"ctb\"), person(\"Trevor\", \"Davis\", role = \"ctb\"), person(\"Viktoras\", \"Veitas\", role = \"ctb\"), person(\"Weicheng\", \"Zhu\", role = \"ctb\"), person(\"Wush\", \"Wu\", role = \"ctb\"), person(\"Zachary\", \"Foster\", role = \"ctb\"), person(\"Zhian N.\", \"Kamvar\", role = \"ctb\", comment = c(ORCID = \"0000-0003-1458-7108\")), person(given = \"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", "Description": "Provides a general-purpose tool for dynamic report generation in R using Literate Programming techniques.", "Depends": [ "R (>= 3.6.0)" ], "Imports": [ "evaluate (>= 0.15)", "highr (>= 0.11)", "methods", "tools", "xfun (>= 0.52)", "yaml (>= 2.1.19)" ], "Suggests": [ "bslib", "DBI (>= 0.4-1)", "digest", "formatR", "gifski", "gridSVG", "htmlwidgets (>= 0.7)", "jpeg", "JuliaCall (>= 0.11.1)", "magick", "litedown (>= 0.10)", "otel", "otelsdk", "png", "ragg (>= 1.5.0)", "reticulate (>= 1.4)", "rgl (>= 0.95.1201)", "rlang", "rmarkdown", "sass", "showtext", "styler (>= 1.2.0)", "targets (>= 0.6.0)", "testit", "tibble", "tikzDevice (>= 0.10)", "tinytex (>= 0.56)", "webshot", "rstudioapi", "svglite" ], "License": "GPL", "URL": "https://yihui.org/knitr/", "BugReports": "https://github.com/yihui/knitr/issues", "Encoding": "UTF-8", "VignetteBuilder": "litedown, knitr", "SystemRequirements": "Package vignettes based on R Markdown v2 or reStructuredText require Pandoc (http://pandoc.org). The function rst2pdf() requires rst2pdf (https://github.com/rst2pdf/rst2pdf).", "Collate": "'block.R' 'cache.R' 'citation.R' 'hooks-html.R' 'plot.R' 'utils.R' 'defaults.R' 'concordance.R' 'engine.R' 'highlight.R' 'themes.R' 'header.R' 'hooks-asciidoc.R' 'hooks-chunk.R' 'hooks-extra.R' 'hooks-latex.R' 'hooks-md.R' 'hooks-rst.R' 'hooks-textile.R' 'hooks-typst.R' 'hooks.R' 'otel.R' 'output.R' 'package.R' 'pandoc.R' 'params.R' 'parser.R' 'pattern.R' 'rocco.R' 'spin.R' 'table.R' 'template.R' 'utils-conversion.R' 'utils-rd2html.R' 'utils-string.R' 'utils-sweave.R' 'utils-upload.R' 'utils-vignettes.R' 'zzz.R'", "Config/roxygen2/version": "8.1.0", "NeedsCompilation": "no", "Author": "Yihui Xie [aut, cre] (ORCID: , URL: https://yihui.org), Abhraneel Sarma [ctb], Adam Vogt [ctb], Alastair Andrew [ctb], Alex Zvoleff [ctb], Amar Al-Zubaidi [ctb], Andre Simon [ctb] (the CSS files under inst/themes/ were derived from the Highlight package http://www.andre-simon.de), Aron Atkins [ctb], Aaron Wolen [ctb], Ashley Manton [ctb], Atsushi Yasumoto [ctb] (ORCID: ), Ben Baumer [ctb], Brian Diggs [ctb], Brian Zhang [ctb], Bulat Yapparov [ctb], Cassio Pereira [ctb], Christophe Dervieux [ctb], David Hall [ctb], David Hugh-Jones [ctb], David Robinson [ctb], Doug Hemken [ctb], Duncan Murdoch [ctb], Elio Campitelli [ctb], Ellis Hughes [ctb], Emily Riederer [ctb], Fabian Hirschmann [ctb], Fitch Simeon [ctb], Forest Fang [ctb], Frank E Harrell Jr [ctb] (the Sweavel package at inst/misc/Sweavel.sty), Garrick Aden-Buie [ctb], Gregoire Detrez [ctb], Hadley Wickham [ctb], Hao Zhu [ctb], Heewon Jeon [ctb], Henrik Bengtsson [ctb], Hiroaki Yutani [ctb], Ian Lyttle [ctb], Hodges Daniel [ctb], Jacob Bien [ctb], Jake Burkhead [ctb], James Manton [ctb], Jared Lander [ctb], Jason Punyon [ctb], Javier Luraschi [ctb], Jeff Arnold [ctb], Jenny Bryan [ctb], Jeremy Ashkenas [ctb, cph] (the CSS file at inst/misc/docco-classic.css), Jeremy Stephens [ctb], Jim Hester [ctb], Joe Cheng [ctb], Johan Larsson [ctb], Johannes Ranke [ctb], John Honaker [ctb], John Muschelli [ctb], Jonathan Keane [ctb], JJ Allaire [ctb], Johan Toloe [ctb], Jonathan Sidi [ctb], Joseph Larmarange [ctb], Julien Barnier [ctb], Kaiyin Zhong [ctb], Kamil Slowikowski [ctb], Karl Forner [ctb], Kevin K. Smith [ctb], Kirill Mueller [ctb], Kohske Takahashi [ctb], Leonidas Zhak [ctb], Lorenz Walthert [ctb], Lucas Gallindo [ctb], Marius Hofert [ctb], Martin Modrák [ctb], Michael Chirico [ctb], Michael Friendly [ctb], Michal Bojanowski [ctb], Michel Kuhlmann [ctb], Miller Patrick [ctb], Nacho Caballero [ctb], Nick Salkowski [ctb], Niels Richard Hansen [ctb], Noam Ross [ctb], Obada Mahdi [ctb], Pavel N. Krivitsky [ctb] (ORCID: ), Pedro Faria [ctb], Qiang Li [ctb], Ramnath Vaidyanathan [ctb], Richard Cotton [ctb], Robert Krzyzanowski [ctb], Rodrigo Copetti [ctb], Romain Francois [ctb], Ruaridh Williamson [ctb], Sagiru Mati [ctb] (ORCID: ), Scott Kostyshak [ctb], Sebastian Meyer [ctb], Sietse Brouwer [ctb], Simon de Bernard [ctb], Sylvain Rousseau [ctb], Taiyun Wei [ctb], Thibaut Assus [ctb], Thibaut Lamadon [ctb], Thomas Leeper [ctb], Tim Mastny [ctb], Tom Torsney-Weir [ctb], Trevor Davis [ctb], Viktoras Veitas [ctb], Weicheng Zhu [ctb], Wush Wu [ctb], Zachary Foster [ctb], Zhian N. Kamvar [ctb] (ORCID: ), Posit Software, PBC [cph, fnd]", "Maintainer": "Yihui Xie ", "Repository": "CRAN" }, "labeling": { "Package": "labeling", "Version": "0.4.3", "Source": "Repository", "Type": "Package", "Title": "Axis Labeling", "Date": "2023-08-29", "Author": "Justin Talbot,", "Maintainer": "Nuno Sempere ", "Description": "Functions which provide a range of axis labeling algorithms.", "License": "MIT + file LICENSE | Unlimited", "Collate": "'labeling.R'", "NeedsCompilation": "no", "Imports": [ "stats", "graphics" ], "Repository": "CRAN", "Encoding": "UTF-8" }, "later": { "Package": "later", "Version": "1.4.8", "Source": "Repository", "Type": "Package", "Title": "Utilities for Scheduling Functions to Execute Later with Event Loops", "Authors@R": "c( person(\"Winston\", \"Chang\", , \"winston@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0002-1576-2126\")), person(\"Joe\", \"Cheng\", , \"joe@posit.co\", role = \"aut\"), person(\"Charlie\", \"Gao\", , \"charlie.gao@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-0750-061X\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")), person(\"Marcus\", \"Geelnard\", role = c(\"ctb\", \"cph\"), comment = \"TinyCThread library, https://tinycthread.github.io/\"), person(\"Evan\", \"Nemerson\", role = c(\"ctb\", \"cph\"), comment = \"TinyCThread library, https://tinycthread.github.io/\") )", "Description": "Executes arbitrary R or C functions some time after the current time, after the R execution stack has emptied. The functions are scheduled in an event loop.", "License": "MIT + file LICENSE", "URL": "https://later.r-lib.org, https://github.com/r-lib/later", "BugReports": "https://github.com/r-lib/later/issues", "Depends": [ "R (>= 3.5)" ], "Imports": [ "Rcpp (>= 1.0.10)", "rlang" ], "Suggests": [ "knitr", "nanonext", "promises", "rmarkdown", "testthat (>= 3.0.0)" ], "LinkingTo": [ "Rcpp" ], "VignetteBuilder": "knitr", "Config/build/compilation-database": "true", "Config/Needs/website": "tidyverse/tidytemplate", "Config/testthat/edition": "3", "Config/usethis/last-upkeep": "2025-07-18", "Encoding": "UTF-8", "RoxygenNote": "7.3.3", "NeedsCompilation": "yes", "Author": "Winston Chang [aut] (ORCID: ), Joe Cheng [aut], Charlie Gao [aut, cre] (ORCID: ), Posit Software, PBC [cph, fnd] (ROR: ), Marcus Geelnard [ctb, cph] (TinyCThread library, https://tinycthread.github.io/), Evan Nemerson [ctb, cph] (TinyCThread library, https://tinycthread.github.io/)", "Maintainer": "Charlie Gao ", "Repository": "CRAN" }, "lattice": { "Package": "lattice", "Version": "0.22-9", "Source": "Repository", "Date": "2026-02-03", "Priority": "recommended", "Title": "Trellis Graphics for R", "Authors@R": "c(person(\"Deepayan\", \"Sarkar\", role = c(\"aut\", \"cre\"), email = \"deepayan.sarkar@r-project.org\", comment = c(ORCID = \"0000-0003-4107-1553\")), person(\"Felix\", \"Andrews\", role = \"ctb\"), person(\"Kevin\", \"Wright\", role = \"ctb\", comment = \"documentation\"), person(\"Neil\", \"Klepeis\", role = \"ctb\"), person(\"Johan\", \"Larsson\", role = \"ctb\", comment = \"miscellaneous improvements\"), person(\"Zhijian (Jason)\", \"Wen\", role = \"cph\", comment = \"filled contour code\"), person(\"Paul\", \"Murrell\", role = \"ctb\", email = \"paul@stat.auckland.ac.nz\"), person(\"Stefan\", \"Eng\", role = \"ctb\", comment = \"violin plot improvements\"), person(\"Achim\", \"Zeileis\", role = \"ctb\", comment = \"modern colors\"), person(\"Alexandre\", \"Courtiol\", role = \"ctb\", comment = \"generics for larrows, lpolygon, lrect and lsegments\") )", "Description": "A powerful and elegant high-level data visualization system inspired by Trellis graphics, with an emphasis on multivariate data. Lattice is sufficient for typical graphics needs, and is also flexible enough to handle most nonstandard requirements. See ?Lattice for an introduction.", "Depends": [ "R (>= 4.0.0)" ], "Suggests": [ "KernSmooth", "MASS", "latticeExtra", "colorspace" ], "Imports": [ "grid", "grDevices", "graphics", "stats", "utils" ], "Enhances": [ "chron", "zoo" ], "LazyLoad": "yes", "LazyData": "yes", "License": "GPL (>= 2)", "URL": "https://lattice.r-forge.r-project.org/", "BugReports": "https://github.com/deepayan/lattice/issues", "NeedsCompilation": "yes", "Author": "Deepayan Sarkar [aut, cre] (ORCID: ), Felix Andrews [ctb], Kevin Wright [ctb] (documentation), Neil Klepeis [ctb], Johan Larsson [ctb] (miscellaneous improvements), Zhijian (Jason) Wen [cph] (filled contour code), Paul Murrell [ctb], Stefan Eng [ctb] (violin plot improvements), Achim Zeileis [ctb] (modern colors), Alexandre Courtiol [ctb] (generics for larrows, lpolygon, lrect and lsegments)", "Maintainer": "Deepayan Sarkar ", "Repository": "CRAN" }, "lazyeval": { "Package": "lazyeval", "Version": "0.2.3", "Source": "Repository", "Title": "Lazy (Non-Standard) Evaluation", "Description": "An alternative approach to non-standard evaluation using formulas. Provides a full implementation of LISP style 'quasiquotation', making it easier to generate code with other code.", "Authors@R": "c( person(\"Hadley\", \"Wickham\", ,\"hadley@rstudio.com\", c(\"aut\", \"cre\")), person(\"RStudio\", role = \"cph\") )", "License": "GPL-3", "Depends": [ "R (>= 3.1.0)" ], "Imports": [ "rlang" ], "Suggests": [ "knitr", "rmarkdown (>= 0.2.65)", "testthat", "covr" ], "VignetteBuilder": "knitr", "RoxygenNote": "7.3.3", "Config/build/compilation-database": "true", "NeedsCompilation": "yes", "Author": "Hadley Wickham [aut, cre], RStudio [cph]", "Maintainer": "Hadley Wickham ", "Repository": "CRAN" }, "lifecycle": { "Package": "lifecycle", "Version": "1.0.5", "Source": "Repository", "Title": "Manage the Life Cycle of your Package Functions", "Authors@R": "c( person(\"Lionel\", \"Henry\", , \"lionel@posit.co\", role = c(\"aut\", \"cre\")), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", "Description": "Manage the life cycle of your exported functions with shared conventions, documentation badges, and user-friendly deprecation warnings.", "License": "MIT + file LICENSE", "URL": "https://lifecycle.r-lib.org/, https://github.com/r-lib/lifecycle", "BugReports": "https://github.com/r-lib/lifecycle/issues", "Depends": [ "R (>= 3.6)" ], "Imports": [ "cli (>= 3.4.0)", "rlang (>= 1.1.0)" ], "Suggests": [ "covr", "knitr", "lintr (>= 3.1.0)", "rmarkdown", "testthat (>= 3.0.1)", "tibble", "tidyverse", "tools", "vctrs", "withr", "xml2" ], "VignetteBuilder": "knitr", "Config/Needs/website": "tidyverse/tidytemplate, usethis", "Config/testthat/edition": "3", "Encoding": "UTF-8", "RoxygenNote": "7.3.3", "NeedsCompilation": "no", "Author": "Lionel Henry [aut, cre], Hadley Wickham [aut] (ORCID: ), Posit Software, PBC [cph, fnd]", "Maintainer": "Lionel Henry ", "Repository": "CRAN" }, "lightgbm": { "Package": "lightgbm", "Version": "4.7.0", "Source": "Repository", "Type": "Package", "Title": "Light Gradient Boosting Machine", "Date": "2026-07-18", "Authors@R": "c( person(\"Yu\", \"Shi\", email = \"yushi2@microsoft.com\", role = c(\"aut\")), person(\"Guolin\", \"Ke\", email = \"guolin.ke@outlook.com\", role = c(\"aut\")), person(\"Damien\", \"Soukhavong\", email = \"damien.soukhavong@skema.edu\", role = c(\"aut\")), person(\"James\", \"Lamb\", email=\"jaylamb20@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Qi\", \"Meng\", role = c(\"aut\")), person(\"Thomas\", \"Finley\", role = c(\"aut\")), person(\"Taifeng\", \"Wang\", role = c(\"aut\")), person(\"Wei\", \"Chen\", role = c(\"aut\")), person(\"Weidong\", \"Ma\", role = c(\"aut\")), person(\"Qiwei\", \"Ye\", role = c(\"aut\")), person(\"Tie-Yan\", \"Liu\", role = c(\"aut\")), person(\"Nikita\", \"Titov\", role = c(\"aut\")), person(\"Yachen\", \"Yan\", role = c(\"ctb\")), person(\"Microsoft Corporation\", role = c(\"cph\")), person(\"Dropbox, Inc.\", role = c(\"cph\")), person(\"Alberto\", \"Ferreira\", role = c(\"ctb\")), person(\"Daniel\", \"Lemire\", role = c(\"ctb\")), person(\"Victor\", \"Zverovich\", role = c(\"cph\")), person(\"IBM Corporation\", role = c(\"ctb\")), person(\"David\", \"Cortes\", role = c(\"aut\")), person(\"Michael\", \"Mayer\", role = c(\"ctb\")) )", "Description": "Tree based algorithms can be improved by introducing boosting frameworks. 'LightGBM' is one such framework, based on Ke, Guolin et al. (2017) . This package offers an R interface to work with it. It is designed to be distributed and efficient with the following advantages: 1. Faster training speed and higher efficiency. 2. Lower memory usage. 3. Better accuracy. 4. Parallel learning supported. 5. Capable of handling large-scale data. In recognition of these advantages, 'LightGBM' has been widely-used in many winning solutions of machine learning competitions. Comparison experiments on public datasets suggest that 'LightGBM' can outperform existing boosting frameworks on both efficiency and accuracy, with significantly lower memory consumption. In addition, parallel experiments suggest that in certain circumstances, 'LightGBM' can achieve a linear speed-up in training time by using multiple machines.", "Encoding": "UTF-8", "License": "MIT + file LICENSE", "URL": "https://github.com/lightgbm-org/LightGBM", "BugReports": "https://github.com/lightgbm-org/LightGBM/issues", "NeedsCompilation": "yes", "Biarch": "true", "VignetteBuilder": "knitr", "Suggests": [ "knitr", "markdown", "RhpcBLASctl", "testthat" ], "Depends": [ "R (>= 4.0)" ], "Imports": [ "R6 (>= 2.4.0)", "data.table (>= 1.9.6)", "graphics", "jsonlite (>= 1.0)", "Matrix (>= 1.1-0)", "methods", "parallel", "utils" ], "SystemRequirements": "C++17", "Config/roxygen2/version": "8.0.0", "Author": "Yu Shi [aut], Guolin Ke [aut], Damien Soukhavong [aut], James Lamb [aut, cre], Qi Meng [aut], Thomas Finley [aut], Taifeng Wang [aut], Wei Chen [aut], Weidong Ma [aut], Qiwei Ye [aut], Tie-Yan Liu [aut], Nikita Titov [aut], Yachen Yan [ctb], Microsoft Corporation [cph], Dropbox, Inc. [cph], Alberto Ferreira [ctb], Daniel Lemire [ctb], Victor Zverovich [cph], IBM Corporation [ctb], David Cortes [aut], Michael Mayer [ctb]", "Maintainer": "James Lamb ", "Repository": "CRAN" }, "litedown": { "Package": "litedown", "Version": "0.11", "Source": "Repository", "Type": "Package", "Title": "A Lightweight Version of R Markdown", "Authors@R": "c( person(\"Yihui\", \"Xie\", role = c(\"aut\", \"cre\"), email = \"xie@yihui.name\", comment = c(ORCID = \"0000-0003-0645-5666\", URL = \"https://yihui.org\")), person(\"Tim\", \"Taylor\", role = \"ctb\", comment = c(ORCID = \"0000-0002-8587-7113\")), person() )", "Description": "Render R Markdown to Markdown (without using 'knitr'), and Markdown to lightweight HTML or 'LaTeX' documents with the 'commonmark' package (instead of 'Pandoc'). Some missing Markdown features in 'commonmark' are also supported, such as raw HTML or 'LaTeX' blocks, 'LaTeX' math, superscripts, subscripts, footnotes, element attributes, and appendices, but not all 'Pandoc' Markdown features are (or will be) supported. With additional JavaScript and CSS, you can also create HTML slides and articles. This package can be viewed as a trimmed-down version of R Markdown and 'knitr'. It does not aim at rich Markdown features or a large variety of output formats (the primary formats are HTML and 'LaTeX'). 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Krivitsky [ctb, cph] (ORCID: , shared copyright on simulate.formula), Emi Tanaka [ctb] (ORCID: ), Ross D. Boylan [ctb] (ORCID: ), Henrik Bengtsson [ctb] (ORCID: )", "Maintainer": "Ben Bolker ", "Repository": "CRAN" }, "lmtest": { "Package": "lmtest", "Version": "0.9-40", "Source": "Repository", "Title": "Testing Linear Regression Models", "Date": "2022-03-21", "Authors@R": "c(person(given = \"Torsten\", family = \"Hothorn\", role = \"aut\", email = \"Torsten.Hothorn@R-project.org\", comment = c(ORCID = \"0000-0001-8301-0471\")), person(given = \"Achim\", family = \"Zeileis\", role = c(\"aut\", \"cre\"), email = \"Achim.Zeileis@R-project.org\", comment = c(ORCID = \"0000-0003-0918-3766\")), person(given = c(\"Richard\", \"W.\"), family = \"Farebrother\", role = \"aut\", comment = \"pan.f\"), person(given = \"Clint\", family = \"Cummins\", role = \"aut\", comment = \"pan.f\"), person(given = \"Giovanni\", family = \"Millo\", role = \"ctb\"), person(given = \"David\", family = \"Mitchell\", role = \"ctb\"))", "Description": "A collection of tests, data sets, and examples for diagnostic checking in linear regression models. Furthermore, some generic tools for inference in parametric models are provided.", "LazyData": "yes", "Depends": [ "R (>= 3.0.0)", "stats", "zoo" ], "Suggests": [ "car", "strucchange", "sandwich", "dynlm", "stats4", "survival", "AER" ], "Imports": [ "graphics" ], "License": "GPL-2 | GPL-3", "NeedsCompilation": "yes", "Author": "Torsten Hothorn [aut] (), Achim Zeileis [aut, cre] (), Richard W. Farebrother [aut] (pan.f), Clint Cummins [aut] (pan.f), Giovanni Millo [ctb], David Mitchell [ctb]", "Maintainer": "Achim Zeileis ", "Repository": "CRAN" }, "lubridate": { "Package": "lubridate", "Version": "1.9.5", "Source": "Repository", "Type": "Package", "Title": "Make Dealing with Dates a Little Easier", "Authors@R": "c( person(\"Vitalie\", \"Spinu\", , \"spinuvit@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Garrett\", \"Grolemund\", role = \"aut\"), person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Davis\", \"Vaughan\", role = \"ctb\"), person(\"Ian\", \"Lyttle\", role = \"ctb\"), person(\"Imanuel\", \"Costigan\", role = \"ctb\"), person(\"Jason\", \"Law\", role = \"ctb\"), person(\"Doug\", \"Mitarotonda\", role = \"ctb\"), person(\"Joseph\", \"Larmarange\", role = \"ctb\"), person(\"Jonathan\", \"Boiser\", role = \"ctb\"), person(\"Chel Hee\", \"Lee\", role = \"ctb\") )", "Maintainer": "Vitalie Spinu ", "Description": "Functions to work with date-times and time-spans: fast and user friendly parsing of date-time data, extraction and updating of components of a date-time (years, months, days, hours, minutes, and seconds), algebraic manipulation on date-time and time-span objects. 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This package has been superseded by 'litedown'.", "Depends": [ "R (>= 2.11.1)" ], "Imports": [ "utils", "xfun", "litedown (>= 0.6)" ], "Suggests": [ "knitr", "rmarkdown (>= 2.18)", "yaml", "RCurl" ], "License": "MIT + file LICENSE", "URL": "https://github.com/rstudio/markdown", "BugReports": "https://github.com/rstudio/markdown/issues", "RoxygenNote": "7.3.2", "Encoding": "UTF-8", "NeedsCompilation": "no", "Author": "Yihui Xie [aut, cre] (), JJ Allaire [aut], Jeffrey Horner [aut], Henrik Bengtsson [ctb], Jim Hester [ctb], Yixuan Qiu [ctb], Kohske Takahashi [ctb], Adam November [ctb], Nacho Caballero [ctb], Jeroen Ooms [ctb], Thomas Leeper [ctb], Joe Cheng [ctb], Andrzej Oles [ctb], Posit Software, PBC [cph, fnd]", "Maintainer": "Yihui Xie ", "Repository": "CRAN" }, "mathjaxr": { "Package": "mathjaxr", "Version": "2.0-0", "Source": "Repository", "Date": "2025-12-01", "Title": "Using 'Mathjax' in Rd Files", "Authors@R": "person(given = \"Wolfgang\", family = \"Viechtbauer\", role = c(\"aut\",\"cre\"), email = \"wvb@wvbauer.com\", comment = c(ORCID = \"0000-0003-3463-4063\"))", "Description": "Provides 'MathJax' and macros to enable its use within Rd files for rendering equations in the HTML help files.", "License": "GPL-3", "Encoding": "UTF-8", "BuildManual": "TRUE", "URL": "https://github.com/wviechtb/mathjaxr", "BugReports": "https://github.com/wviechtb/mathjaxr/issues", "NeedsCompilation": "no", "Author": "Wolfgang Viechtbauer [aut, cre] (ORCID: )", "Maintainer": "Wolfgang Viechtbauer ", "Repository": "CRAN" }, "maxstat": { "Package": "maxstat", "Version": "0.7-26", "Source": "Repository", "Title": "Maximally Selected Rank Statistics", "Date": "2025-05-02", "Authors@R": "person(\"Torsten\", \"Hothorn\", role = c(\"aut\", \"cre\"), email = \"Torsten.Hothorn@R-project.org\", comment = c(ORCID = \"0000-0001-8301-0471\"))", "Description": "Maximally selected rank statistics with several p-value approximations.", "Depends": [ "R (>= 1.7.0)" ], "Imports": [ "exactRankTests(>= 0.8-23)", "mvtnorm(>= 0.5-10)", "stats", "graphics" ], "Suggests": [ "TH.data", "survival" ], "License": "GPL (>= 2)", "LazyData": "yes", "NeedsCompilation": "yes", "Author": "Torsten Hothorn [aut, cre] (ORCID: )", "Maintainer": "Torsten Hothorn ", "Repository": "CRAN" }, "memoise": { "Package": "memoise", "Version": "2.0.1", "Source": "Repository", "Title": "'Memoisation' of Functions", "Authors@R": "c(person(given = \"Hadley\", family = \"Wickham\", role = \"aut\", email = \"hadley@rstudio.com\"), person(given = \"Jim\", family = \"Hester\", role = \"aut\"), person(given = \"Winston\", family = \"Chang\", role = c(\"aut\", \"cre\"), email = \"winston@rstudio.com\"), person(given = \"Kirill\", family = \"Müller\", role = \"aut\", email = \"krlmlr+r@mailbox.org\"), person(given = \"Daniel\", family = \"Cook\", role = \"aut\", email = \"danielecook@gmail.com\"), person(given = \"Mark\", family = \"Edmondson\", role = \"ctb\", email = \"r@sunholo.com\"))", "Description": "Cache the results of a function so that when you call it again with the same arguments it returns the previously computed value.", "License": "MIT + file LICENSE", "URL": "https://memoise.r-lib.org, https://github.com/r-lib/memoise", "BugReports": "https://github.com/r-lib/memoise/issues", "Imports": [ "rlang (>= 0.4.10)", "cachem" ], "Suggests": [ "digest", "aws.s3", "covr", "googleAuthR", "googleCloudStorageR", "httr", "testthat" ], "Encoding": "UTF-8", "RoxygenNote": "7.1.2", "NeedsCompilation": "no", "Author": "Hadley Wickham [aut], Jim Hester [aut], Winston Chang [aut, cre], Kirill Müller [aut], Daniel Cook [aut], Mark Edmondson [ctb]", "Maintainer": "Winston Chang ", "Repository": "CRAN" }, "memuse": { "Package": "memuse", "Version": "4.2-3", "Source": "Repository", "Title": "Memory Estimation Utilities", "Description": "How much ram do you need to store a 100,000 by 100,000 matrix? 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Learn the scintillating answer to these and many more such questions with the 'memuse' package.", "License": "BSD 2-clause License + file LICENSE", "Depends": [ "R (>= 3.0.0)" ], "Imports": [ "methods", "utils" ], "NeedsCompilation": "yes", "ByteCompile": "yes", "Authors@R": "c( person(\"Drew\", \"Schmidt\", email=\"wrathematics@gmail.com\", role=c(\"aut\", \"cre\")), person(\"Christian\", \"Heckendorf\", role=\"ctb\", comment=\"FreeBSD improvements to meminfo\"), person(\"Wei-Chen\", \"Chen\", role=\"ctb\", comment=\"Windows build fixes\"), person(\"Dan\", \"Burgess\", role=\"ctb\", comment=\"donation of a Mac for development and testing\"))", "Maintainer": "Drew Schmidt ", "URL": "https://github.com/shinra-dev/memuse", "BugReports": "https://github.com/shinra-dev/memuse/issues", "RoxygenNote": "7.1.2", "Author": "Drew Schmidt [aut, cre], Christian Heckendorf [ctb] (FreeBSD improvements to meminfo), Wei-Chen Chen [ctb] (Windows build fixes), Dan Burgess [ctb] (donation of a Mac for development and testing)", "Repository": "CRAN", "Encoding": "UTF-8" }, "meta": { "Package": "meta", "Version": "8.5-0", "Source": "Repository", "Title": "General Package for Meta-Analysis", "Date": "2026-05-25", "Depends": [ "R (>= 4.0.0)", "metabook (>= 0.2-0)" ], "Imports": [ "metafor (>= 3.0-0)", "grid", "ggplot2", "lme4", "CompQuadForm", "xml2", "methods", "readr", "dplyr", "magrittr", "purrr", "stringr", "rlang", "tibble", "scales", "cli" ], "Suggests": [ "netmeta", "BiasedUrn", "pimeta", "estmeansd", "robvis", "brglm2", "writexl", "rmarkdown", "knitr", "ggpubr", "gridExtra", "gemtc", "ragg", "metadat", "svglite" ], "Authors@R": "person(\"Guido\", \"Schwarzer\", role = c(\"cre\", \"aut\"), email = \"guido.schwarzer@uniklinik-freiburg.de\", comment = c(ORCID = \"0000-0001-6214-9087\"))", "Author": "Guido Schwarzer [cre, aut] (ORCID: )", "Maintainer": "Guido Schwarzer ", "URL": "https://github.com/guido-s/meta/ https://link.springer.com/book/10.1007/978-3-319-21416-0", "Description": "User-friendly general package providing standard methods for meta-analysis and supporting Schwarzer, Carpenter, and Rücker , \"Meta-Analysis with R\" (2015): - common effect and random effects meta-analysis; - several plots (forest, funnel, Galbraith / radial, L'Abbe, Baujat, bubble); - three-level meta-analysis model; - generalised linear mixed model; - logistic regression with penalised likelihood for rare events; - Hartung-Knapp method for random effects model; - Kenward-Roger method for random effects model; - prediction interval and density of the prediction distribution; - expected proportion of comparable studies with clinically important benefit or harm; - statistical tests for funnel plot asymmetry; - trim-and-fill method to evaluate bias in meta-analysis; - meta-regression; - cumulative meta-analysis and leave-one-out meta-analysis; - import data from 'RevMan 5'; - produce forest plot summarising several (subgroup) meta-analyses.", "License": "GPL (>= 2)", "Encoding": "UTF-8", "VignetteBuilder": "knitr", "Config/roxygen2/version": "8.0.0", "NeedsCompilation": "no", "Repository": "CRAN" }, "metabook": { "Package": "metabook", "Version": "0.2-0", "Source": "Repository", "Title": "Data Sets and Code for \"Meta-Analysis with R\"", "Date": "2026-03-13", "Depends": [ "R (>= 4.0.0)" ], "Suggests": [ "meta", "netmeta", "metasens", "netdose" ], "Authors@R": "person(\"Guido\", \"Schwarzer\", role = c(\"cre\", \"aut\"), email = \"guido.schwarzer@uniklinik-freiburg.de\", comment = c(ORCID = \"0000-0001-6214-9087\"))", "Author": "Guido Schwarzer [cre, aut] (ORCID: )", "Maintainer": "Guido Schwarzer ", "URL": "https://github.com/guido-s/metabook/", "Description": "Data sets and code supporting the second edition of \"Meta-Analysis with R\"; first edition: Schwarzer, Carpenter, and Rücker (2015) .", "LazyData": "TRUE", "License": "GPL (>= 2)", "Encoding": "UTF-8", "RoxygenNote": "7.3.3", "NeedsCompilation": "no", "Repository": "CRAN" }, "metadat": { "Package": "metadat", "Version": "1.6-0", "Source": "Repository", "Date": "2026-04-29", "Title": "Meta-Analysis Datasets", "Authors@R": "c( person(given = \"Wolfgang\", family = \"Viechtbauer\", role = c(\"aut\",\"cre\"), email = \"wvb@metafor-project.org\", comment = c(ORCID = \"0000-0003-3463-4063\")), person(given = \"Thomas\", family=\"White\", role=\"aut\", email = \"thomas.white@sydney.edu.au\", comment = c(ORCID = \"0000-0002-3976-1734\")), person(given = \"Daniel\", family=\"Noble\", role=\"aut\", email = \"daniel.noble@anu.edu.au\", comment = c(ORCID = \"0000-0001-9460-8743\")), person(given = \"Alistair\", family=\"Senior\", role=\"aut\", email = \"alistair.senior@sydney.edu.au\", comment = c(ORCID = \"0000-0001-9805-7280\")), person(given = \"W. 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Kyle Hamilton [aut] (ORCID: ), Guido Schwarzer [dtc] (ORCID: ), Christian Röver [dtc] (ORCID: )", "Maintainer": "Wolfgang Viechtbauer ", "Repository": "CRAN" }, "metafor": { "Package": "metafor", "Version": "5.2-1", "Source": "Repository", "Date": "2026-09-15", "Title": "Meta-Analysis Package for R", "Authors@R": "person(given = \"Wolfgang\", family = \"Viechtbauer\", role = c(\"aut\",\"cre\"), email = \"wvb@metafor-project.org\", comment = c(ORCID = \"0000-0003-3463-4063\"))", "Depends": [ "R (>= 4.0.0)", "methods", "Matrix", "metadat", "numDeriv" ], "Imports": [ "stats", "utils", "graphics", "grDevices", "nlme", "mathjaxr", "pbapply", "digest" ], "Suggests": [ "lme4", "pracma", "minqa", "nloptr", "dfoptim", "ucminf", "lbfgsb3c", "subplex", "BB", "Rsolnp", "alabama", "optimParallel", "optimx", "CompQuadForm", "mvtnorm", "BiasedUrn", "Epi", "survival", "GLMMadaptive", "glmmTMB", "car", "multcomp", "gsl", "sp", "ape", "boot", "clubSandwich", "crayon", "R.rsp", "testthat", "rmarkdown", "wildmeta", "emmeans", "estmeansd", "metaBLUE", "rstudioapi", "glmulti", "MuMIn", "mice", "Amelia", "calculus" ], "Description": "A comprehensive collection of functions for conducting meta-analyses in R. The package includes functions to calculate various effect sizes or outcome measures, fit equal-, fixed-, random-, and mixed-effects models to such data, carry out moderator and meta-regression analyses, and create various types of meta-analytical plots (e.g., forest, funnel, radial, L'Abbe, Baujat, bubble, and GOSH plots). For meta-analyses of binomial and person-time data, the package also provides functions that implement specialized methods, including the Mantel-Haenszel method, Peto's method, and a variety of suitable generalized linear (mixed-effects) models (i.e., mixed-effects logistic and Poisson regression models). Finally, the package provides functionality for fitting meta-analytic multivariate/multilevel models that account for non-independent sampling errors and/or true effects (e.g., due to the inclusion of multiple treatment studies, multiple endpoints, or other forms of clustering). Network meta-analyses and meta-analyses accounting for known correlation structures (e.g., due to phylogenetic relatedness) can also be conducted. An introduction to the package can be found in Viechtbauer (2010) .", "License": "GPL (>= 2)", "ByteCompile": "TRUE", "Encoding": "UTF-8", "RdMacros": "mathjaxr", "VignetteBuilder": "R.rsp", "BuildManual": "TRUE", "URL": "https://www.metafor-project.org https://github.com/wviechtb/metafor https://wviechtb.github.io/metafor/ https://www.wvbauer.com", "BugReports": "https://github.com/wviechtb/metafor/issues", "NeedsCompilation": "no", "Author": "Wolfgang Viechtbauer [aut, cre] (ORCID: )", "Maintainer": "Wolfgang Viechtbauer ", "Repository": "CRAN" }, "mgcv": { "Package": "mgcv", "Version": "1.9-4", "Source": "Repository", "Authors@R": "person(given = \"Simon\", family = \"Wood\", role = c(\"aut\", \"cre\"), email = \"simon.wood@r-project.org\")", "Title": "Mixed GAM Computation Vehicle with Automatic Smoothness Estimation", "Description": "Generalized additive (mixed) models, some of their extensions and other generalized ridge regression with multiple smoothing parameter estimation by (Restricted) Marginal Likelihood, Cross Validation and similar, or using iterated nested Laplace approximation for fully Bayesian inference. See Wood (2025) for an overview. Includes a gam() function, a wide variety of smoothers, 'JAGS' support and distributions beyond the exponential family.", "Priority": "recommended", "Depends": [ "R (>= 4.4.0)", "nlme (>= 3.1-64)" ], "Imports": [ "methods", "stats", "graphics", "Matrix", "splines", "utils" ], "Suggests": [ "parallel", "survival", "MASS" ], "LazyLoad": "yes", "ByteCompile": "yes", "License": "GPL (>= 2)", "NeedsCompilation": "yes", "Author": "Simon Wood [aut, cre]", "Maintainer": "Simon Wood ", "Repository": "CRAN" }, "mime": { "Package": "mime", "Version": "0.13", "Source": "Repository", "Type": "Package", "Title": "Map Filenames to MIME Types", "Authors@R": "c( person(\"Yihui\", \"Xie\", role = c(\"aut\", \"cre\"), email = \"xie@yihui.name\", comment = c(ORCID = \"0000-0003-0645-5666\", URL = \"https://yihui.org\")), person(\"Jeffrey\", \"Horner\", role = \"ctb\"), person(\"Beilei\", \"Bian\", role = \"ctb\") )", "Description": "Guesses the MIME type from a filename extension using the data derived from /etc/mime.types in UNIX-type systems.", "Imports": [ "tools" ], "License": "GPL", "URL": "https://github.com/yihui/mime", "BugReports": "https://github.com/yihui/mime/issues", "RoxygenNote": "7.3.2", "Encoding": "UTF-8", "NeedsCompilation": "yes", "Author": "Yihui Xie [aut, cre] (, https://yihui.org), Jeffrey Horner [ctb], Beilei Bian [ctb]", "Maintainer": "Yihui Xie ", "Repository": "CRAN" }, "minqa": { "Package": "minqa", "Version": "1.2.8", "Source": "Repository", "Type": "Package", "Title": "Derivative-Free Optimization Algorithms by Quadratic Approximation", "Authors@R": "c(person(given = \"Douglas\", family = \"Bates\", role = \"aut\"), person(given = c(\"Katharine\", \"M.\"), family = \"Mullen\", role = c(\"aut\", \"cre\"), email = \"katharine.mullen@stat.ucla.edu\"), person(given = c(\"John\", \"C.\"), family = \"Nash\", role = \"aut\"), person(given = \"Ravi\", family = \"Varadhan\", role = \"aut\"))", "Maintainer": "Katharine M. Mullen ", "Description": "Derivative-free optimization by quadratic approximation based on an interface to Fortran implementations by M. J. D. Powell.", "License": "GPL-2", "URL": "http://optimizer.r-forge.r-project.org", "Imports": [ "Rcpp (>= 0.9.10)" ], "LinkingTo": [ "Rcpp" ], "SystemRequirements": "GNU make", "NeedsCompilation": "yes", "Repository": "CRAN", "Author": "Douglas Bates [aut], Katharine M. Mullen [aut, cre], John C. Nash [aut], Ravi Varadhan [aut]" }, "modelr": { "Package": "modelr", "Version": "0.1.11", "Source": "Repository", "Title": "Modelling Functions that Work with the Pipe", "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", "Description": "Functions for modelling that help you seamlessly integrate modelling into a pipeline of data manipulation and visualisation.", "License": "GPL-3", "URL": "https://modelr.tidyverse.org, https://github.com/tidyverse/modelr", "BugReports": "https://github.com/tidyverse/modelr/issues", "Depends": [ "R (>= 3.2)" ], "Imports": [ "broom", "magrittr", "purrr (>= 0.2.2)", "rlang (>= 1.0.6)", "tibble", "tidyr (>= 0.8.0)", "tidyselect", "vctrs" ], "Suggests": [ "compiler", "covr", "ggplot2", "testthat (>= 3.0.0)" ], "Config/Needs/website": "tidyverse/tidytemplate", "Encoding": "UTF-8", "LazyData": "true", "RoxygenNote": "7.2.3", "Config/testthat/edition": "3", "NeedsCompilation": "no", "Author": "Hadley Wickham [aut, cre], Posit Software, PBC [cph, fnd]", "Maintainer": "Hadley Wickham ", "Repository": "CRAN" }, "mvtnorm": { "Package": "mvtnorm", "Version": "1.4-2", "Source": "Repository", "Title": "Multivariate Normal and t Distributions", "Authors@R": "c(person(\"Alan\", \"Genz\", role = \"aut\"), person(\"Frank\", \"Bretz\", role = \"aut\"), person(\"Tetsuhisa\", \"Miwa\", role = \"aut\"), person(\"Xuefei\", \"Mi\", role = \"aut\"), person(\"Friedrich\", \"Leisch\", role = \"ctb\"), person(\"Fabian\", \"Scheipl\", role = \"ctb\"), person(\"Bjoern\", \"Bornkamp\", role = \"ctb\", comment = c(ORCID = \"0000-0002-6294-8185\")), person(\"Martin\", \"Maechler\", role = \"ctb\", comment = c(ORCID = \"0000-0002-8685-9910\")), person(\"Torsten\", \"Hothorn\", role = c(\"aut\", \"cre\"), email = \"Torsten.Hothorn@R-project.org\", comment = c(ORCID = \"0000-0001-8301-0471\")))", "Description": "Computes multivariate normal and t probabilities, quantiles, random deviates, and densities. Log-likelihoods for multivariate Gaussian models and Gaussian copulae parameterised by Cholesky factors of covariance or precision matrices are implemented for interval-censored and exact data, or a mix thereof. Score functions for these log-likelihoods are available. A class representing multiple lower triangular matrices and corresponding methods are part of this package.", "Imports": [ "stats", "utils" ], "Depends": [ "R(>= 3.5.0)" ], "Suggests": [ "qrng", "numDeriv", "bibtex" ], "License": "GPL-2", "URL": "https://codeberg.org/thothorn/mvtnorm", "NeedsCompilation": "yes", "Author": "Alan Genz [aut], Frank Bretz [aut], Tetsuhisa Miwa [aut], Xuefei Mi [aut], Friedrich Leisch [ctb], Fabian Scheipl [ctb], Bjoern Bornkamp [ctb] (ORCID: ), Martin Maechler [ctb] (ORCID: ), Torsten Hothorn [aut, cre] (ORCID: )", "Maintainer": "Torsten Hothorn ", "Repository": "CRAN" }, "networkD3": { "Package": "networkD3", "Version": "0.4.1", "Source": "Repository", "Type": "Package", "Title": "D3 JavaScript Network Graphs from R", "Description": "Creates 'D3' 'JavaScript' network, tree, dendrogram, and Sankey graphs from 'R'.", "Date": "2025-04-14", "Authors@R": "c( person(\"J.J.\", \"Allaire\", role = \"aut\"), person(\"Peter\", \"Ellis\", role = \"ctb\"), person(\"Christopher\", \"Gandrud\", email = \"christopher.gandrud@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Kevin\", \"Kuo\", role = \"ctb\"), person(\"B.W.\", \"Lewis\", role = \"ctb\"), person(\"Jonathan\", \"Owen\", role = \"ctb\"), person(\"Kenton\", \"Russell\", role = \"aut\"), person(\"Jennifer\",\"Rogers\", role = \"ctb\"), person(\"Charles\", \"Sese\", role = \"ctb\"), person(\"CJ\", \"Yetman\", email = \"cj@cjyetman.com\", role = \"aut\") )", "URL": "https://christophergandrud.github.io/networkD3/, https://github.com/christophergandrud/networkD3", "BugReports": "https://github.com/christophergandrud/networkD3/issues", "License": "GPL (>= 3)", "Depends": [ "R (>= 3.0.0)" ], "Imports": [ "data.tree", "htmlwidgets (>= 0.3.2)", "igraph", "jsonlite", "magrittr" ], "Suggests": [ "htmltools (>= 0.2.6)", "tibble" ], "Encoding": "UTF-8", "Enhances": [ "knitr", "shiny" ], "LazyData": "true", "RoxygenNote": "7.3.2", "NeedsCompilation": "no", "Author": "J.J. Allaire [aut], Peter Ellis [ctb], Christopher Gandrud [aut, cre], Kevin Kuo [ctb], B.W. Lewis [ctb], Jonathan Owen [ctb], Kenton Russell [aut], Jennifer Rogers [ctb], Charles Sese [ctb], CJ Yetman [aut]", "Maintainer": "Christopher Gandrud ", "Repository": "CRAN" }, "nlme": { "Package": "nlme", "Version": "3.1-169", "Source": "Repository", "Date": "2026-03-27", "Priority": "recommended", "Title": "Linear and Nonlinear Mixed Effects Models", "Authors@R": "c(person(\"José\", \"Pinheiro\", role = \"aut\", comment = \"S version\"), person(\"Douglas\", \"Bates\", role = \"aut\", comment = \"up to 2007\"), person(\"Saikat\", \"DebRoy\", role = \"ctb\", comment = \"up to 2002\"), person(\"Deepayan\", \"Sarkar\", role = \"ctb\", comment = \"up to 2005\"), person(\"EISPACK authors\", role = \"ctb\", comment = \"src/rs.f\"), person(\"Siem\", \"Heisterkamp\", role = \"ctb\", comment = \"Author fixed sigma\"), person(\"Bert\", \"Van Willigen\",role = \"ctb\", comment = \"Programmer fixed sigma\"), person(\"Johannes\", \"Ranke\", role = \"ctb\", comment = \"varConstProp()\"), person(\"R Core Team\", email = \"R-core@R-project.org\", role = c(\"aut\", \"cre\"), comment = c(ROR = \"02zz1nj61\")))", "Contact": "see 'MailingList'", "Description": "Fit and compare Gaussian linear and nonlinear mixed-effects models.", "Depends": [ "R (>= 3.6.0)" ], "Imports": [ "graphics", "stats", "utils", "lattice" ], "Suggests": [ "MASS", "SASmixed" ], "LazyData": "yes", "Encoding": "UTF-8", "License": "GPL (>= 2)", "BugReports": "https://bugs.r-project.org", "MailingList": "R-help@r-project.org", "URL": "https://svn.r-project.org/R-packages/trunk/nlme/", "NeedsCompilation": "yes", "Author": "José Pinheiro [aut] (S version), Douglas Bates [aut] (up to 2007), Saikat DebRoy [ctb] (up to 2002), Deepayan Sarkar [ctb] (up to 2005), EISPACK authors [ctb] (src/rs.f), Siem Heisterkamp [ctb] (Author fixed sigma), Bert Van Willigen [ctb] (Programmer fixed sigma), Johannes Ranke [ctb] (varConstProp()), R Core Team [aut, cre] (ROR: )", "Maintainer": "R Core Team ", "Repository": "CRAN" }, "nloptr": { "Package": "nloptr", "Version": "2.2.1", "Source": "Repository", "Type": "Package", "Title": "R Interface to NLopt", "Authors@R": "c(person(\"Jelmer\", \"Ypma\", role = \"aut\", email = \"uctpjyy@ucl.ac.uk\"), person(c(\"Steven\", \"G.\"), \"Johnson\", role = \"aut\", comment = \"author of the NLopt C library\"), person(\"Aymeric\", \"Stamm\", role = c(\"ctb\", \"cre\"), email = \"aymeric.stamm@cnrs.fr\", comment = c(ORCID = \"0000-0002-8725-3654\")), person(c(\"Hans\", \"W.\"), \"Borchers\", role = \"ctb\", email = \"hwborchers@googlemail.com\"), person(\"Dirk\", \"Eddelbuettel\", role = \"ctb\", email = \"edd@debian.org\"), person(\"Brian\", \"Ripley\", role = \"ctb\", comment = \"build process on multiple OS\"), person(\"Kurt\", \"Hornik\", role = \"ctb\", comment = \"build process on multiple OS\"), person(\"Julien\", \"Chiquet\", role = \"ctb\"), person(\"Avraham\", \"Adler\", role = \"ctb\", email = \"Avraham.Adler@gmail.com\", comment = c(ORCID = \"0000-0002-3039-0703\")), person(\"Xiongtao\", \"Dai\", role = \"ctb\"), person(\"Jeroen\", \"Ooms\", role = \"ctb\", email = \"jeroen@berkeley.edu\"), person(\"Tomas\", \"Kalibera\", role = \"ctb\"), person(\"Mikael\", \"Jagan\", role = \"ctb\"))", "Description": "Solve optimization problems using an R interface to NLopt. NLopt is a free/open-source library for nonlinear optimization, providing a common interface for a number of different free optimization routines available online as well as original implementations of various other algorithms. See for more information on the available algorithms. Building from included sources requires 'CMake'. On Linux and 'macOS', if a suitable system build of NLopt (2.7.0 or later) is found, it is used; otherwise, it is built from included sources via 'CMake'. On Windows, NLopt is obtained through 'rwinlib' for 'R <= 4.1.x' or grabbed from the appropriate toolchain for 'R >= 4.2.0'.", "License": "LGPL (>= 3)", "SystemRequirements": "cmake (>= 3.2.0) which is used only on Linux or macOS systems when no system build of nlopt (>= 2.7.0) can be found.", "Encoding": "UTF-8", "RoxygenNote": "7.3.2", "Suggests": [ "knitr", "rmarkdown", "covr", "tinytest" ], "VignetteBuilder": "knitr", "URL": "https://github.com/astamm/nloptr, https://astamm.github.io/nloptr/", "BugReports": "https://github.com/astamm/nloptr/issues", "NeedsCompilation": "yes", "UseLTO": "yes", "Author": "Jelmer Ypma [aut], Steven G. Johnson [aut] (author of the NLopt C library), Aymeric Stamm [ctb, cre] (), Hans W. Borchers [ctb], Dirk Eddelbuettel [ctb], Brian Ripley [ctb] (build process on multiple OS), Kurt Hornik [ctb] (build process on multiple OS), Julien Chiquet [ctb], Avraham Adler [ctb] (), Xiongtao Dai [ctb], Jeroen Ooms [ctb], Tomas Kalibera [ctb], Mikael Jagan [ctb]", "Maintainer": "Aymeric Stamm ", "Repository": "CRAN" }, "nnet": { "Package": "nnet", "Version": "7.3-20", "Source": "Repository", "Priority": "recommended", "Date": "2025-01-01", "Depends": [ "R (>= 3.0.0)", "stats", "utils" ], "Suggests": [ "MASS" ], "Authors@R": "c(person(\"Brian\", \"Ripley\", role = c(\"aut\", \"cre\", \"cph\"), email = \"Brian.Ripley@R-project.org\"), person(\"William\", \"Venables\", role = \"cph\"))", "Description": "Software for feed-forward neural networks with a single hidden layer, and for multinomial log-linear models.", "Title": "Feed-Forward Neural Networks and Multinomial Log-Linear Models", "ByteCompile": "yes", "License": "GPL-2 | GPL-3", "URL": "http://www.stats.ox.ac.uk/pub/MASS4/", "NeedsCompilation": "yes", "Author": "Brian Ripley [aut, cre, cph], William Venables [cph]", "Maintainer": "Brian Ripley ", "Repository": "CRAN" }, "numDeriv": { "Package": "numDeriv", "Version": "2016.8-1.1", "Source": "Repository", "Title": "Accurate Numerical Derivatives", "Description": "Methods for calculating (usually) accurate numerical first and second order derivatives. 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[cph] (cctz library), Posit Software, PBC [cph, fnd]", "Maintainer": "Hadley Wickham ", "Repository": "CRAN" }, "omopgenerics": { "Package": "omopgenerics", "Version": "1.4.2", "Source": "Repository", "Title": "Methods and Classes for the OMOP Common Data Model", "Authors@R": "c( person( \"Martí\", \"Català\", email = \"marti.catalasabate@ndorms.ox.ac.uk\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-3308-9905\") ), person( \"Edward\", \"Burn\", email = \"edward.burn@ndorms.ox.ac.uk\", role = c(\"aut\"), comment = c(ORCID = \"0000-0002-9286-1128\") ), person( \"Mike\", \"Du\", email = \"mike.du@ndorms.ox.ac.uk\", role = c(\"ctb\"), comment = c(ORCID = \"0000-0002-9517-8834\") ), person( \"Yuchen\", \"Guo\", email = \"yuchen.guo@ndorms.ox.ac.uk\", role = c(\"ctb\"), comment = c(ORCID = \"0000-0002-0847-4855\") ), person( \"Adam\", \"Black\", email = \"black@ohdsi.org\", role = c(\"ctb\"), comment = c(ORCID = \"0000-0001-5576-8701\") ), person( \"Marta\", \"Alcalde-Herraiz\", email = \"marta.alcaldeherraiz@ndorms.ox.ac.uk\", role = c(\"ctb\"), comment = c(ORCID = \"0009-0002-4405-1814\") ) )", "Description": "Provides definitions of core classes and methods used by analytic pipelines that query the OMOP (Observational Medical Outcomes Partnership) common data model.", "License": "Apache License (>= 2)", "Encoding": "UTF-8", "Imports": [ "cli", "dbplyr (>= 2.5.1)", "dplyr", "generics", "glue", "lifecycle", "methods", "purrr", "rlang", "snakecase", "stringi", "stringr", "tidyr", "vctrs" ], "Depends": [ "R (>= 4.1)" ], "Suggests": [ "bit64", "CDMConnector", "covr", "duckdb", "gt", "here", "jsonlite", "knitr", "omock", "openxlsx", "readr", "rmarkdown", "testthat (>= 3.0.0)", "withr" ], "URL": "https://darwin-eu.github.io/omopgenerics/", "BugReports": "https://github.com/darwin-eu/omopgenerics/issues", "Config/testthat/edition": "3", "Config/testthat/parallel": "true", "VignetteBuilder": "knitr", "LazyData": "true", "Config/roxygen2/version": "8.0.0", "NeedsCompilation": "no", "Author": "Martí Català [aut, cre] (ORCID: ), Edward Burn [aut] (ORCID: ), Mike Du [ctb] (ORCID: ), Yuchen Guo [ctb] (ORCID: ), Adam Black [ctb] (ORCID: ), Marta Alcalde-Herraiz [ctb] (ORCID: )", "Maintainer": "Martí Català ", "Repository": "CRAN" }, "openssl": { "Package": "openssl", "Version": "2.4.2", "Source": "Repository", "Type": "Package", "Title": "Toolkit for Encryption, Signatures and Certificates Based on OpenSSL", "Authors@R": "c(person(\"Jeroen\", \"Ooms\", role = c(\"aut\", \"cre\"), email = \"jeroenooms@gmail.com\", comment = c(ORCID = \"0000-0002-4035-0289\")), person(\"Oliver\", \"Keyes\", role = \"ctb\"))", "Description": "Bindings to OpenSSL libssl and libcrypto, plus custom SSH key parsers. 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Other utilities include key generators, hash functions (md5, sha1, sha256, etc), base64 encoder, a secure random number generator, and 'bignum' math methods for manually performing crypto calculations on large multibyte integers.", "License": "MIT + file LICENSE", "URL": "https://jeroen.r-universe.dev/openssl", "BugReports": "https://github.com/jeroen/openssl/issues", "SystemRequirements": "OpenSSL >= 1.0.2", "VignetteBuilder": "knitr", "Imports": [ "askpass" ], "Suggests": [ "curl", "testthat (>= 2.1.0)", "digest", "knitr", "rmarkdown", "jsonlite", "jose", "sodium" ], "Encoding": "UTF-8", "Config/roxygen2/version": "8.0.0", "NeedsCompilation": "yes", "Author": "Jeroen Ooms [aut, cre] (ORCID: ), Oliver Keyes [ctb]", "Maintainer": "Jeroen Ooms ", "Repository": "CRAN" }, "openxlsx": { "Package": "openxlsx", "Version": "4.2.9", "Source": "Repository", "Type": "Package", "Title": "Read, Write and Edit xlsx Files", "Authors@R": "c(person(given = \"Philipp\", family = \"Schauberger\", role = \"aut\", email = \"philipp@schauberger.co.at\"), person(given = \"Alexander\", family = \"Walker\", role = \"aut\", email = \"Alexander.Walker1989@gmail.com\"), person(given = \"Luca\", family = \"Braglia\", role = \"ctb\"), person(given = \"Joshua\", family = \"Sturm\", role = \"ctb\"), person(given = \"Jan Marvin\", family = \"Garbuszus\", role = c(\"ctb\", \"cre\"), email = \"jan.garbuszus@ruhr-uni-bochum.de\"), person(given = \"Jordan Mark\", family = \"Barbone\", role = \"ctb\", email = \"jmbarbone@gmail.com\", comment = c(ORCID = \"0000-0001-9788-3628\")), person(given = \"David\", family = \"Zimmermann\", role = \"ctb\", email = \"david_j_zimmermann@hotmail.com\"), person(given = \"Reinhold\", family = \"Kainhofer\", role = \"ctb\", email = \"reinhold@kainhofer.com\"))", "Description": "Simplifies the creation of Excel .xlsx files by providing a high level interface to writing, styling and editing worksheets. 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OpenTelemetry is a collection of tools, APIs, and SDKs used to instrument, generate, collect, and export telemetry data (metrics, logs, and traces) for analysis in order to understand your software's performance and behavior. This package implements the OpenTelemetry API: . 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This packages aims to collect all color palettes across the R ecosystem under the same package with a streamlined API.", "License": "GPL-3", "URL": "https://emilhvitfeldt.github.io/paletteer/, https://github.com/EmilHvitfeldt/paletteer", "BugReports": "https://github.com/EmilHvitfeldt/paletteer/issues", "Depends": [ "R (>= 4.1)" ], "Imports": [ "cli", "prismatic", "rematch2", "rlang (>= 1.1.0)", "rstudioapi" ], "Suggests": [ "covr", "ggplot2 (>= 3.3.0)", "ggthemes (>= 4.0.0)", "harrypotter (>= 2.1.0)", "knitr", "oompaBase", "palr", "pals", "rmarkdown", "scico", "testthat (>= 3.0.0)", "vdiffr", "viridisLite" ], "Config/testthat/edition": "3", "Copyright": "See LICENSE.note file.", "Encoding": "UTF-8", "LazyData": "true", "RoxygenNote": "7.3.3", "NeedsCompilation": "no", "Author": "See AUTHORS file. [aut], Emil Hvitfeldt [aut, cre]", "Maintainer": "Emil Hvitfeldt ", "Repository": "CRAN" }, "pbapply": { "Package": "pbapply", "Version": "1.7-5", "Source": "Repository", "Type": "Package", "Title": "Adding Progress Bar to '*apply' Functions", "Date": "2026-08-31", "Authors@R": "c(person(given = \"Peter\", family = \"Solymos\", comment = c(ORCID = \"0000-0001-7337-1740\"), role = c(\"aut\", \"cre\"), email = \"psolymos@gmail.com\"), person(given = \"Zygmunt\", family = \"Zawadzki\", role = \"aut\", email = \"zygmunt@zstat.pl\"), person(given = \"Henrik\", family = \"Bengtsson\", role = \"ctb\", email = \"henrikb@braju.com\"), person(\"R Core Team\", role = c(\"cph\", \"ctb\")))", "Maintainer": "Peter Solymos ", "Description": "A lightweight package that adds progress bar to vectorized R functions ('*apply'). The implementation can easily be added to functions where showing the progress is useful (e.g. bootstrap). The type and style of the progress bar (with percentages or remaining time) can be set through options. Supports several parallel processing backends including mirai and future.", "Depends": [ "R (>= 3.2.0)" ], "Imports": [ "parallel" ], "Suggests": [ "shiny", "future", "future.apply" ], "License": "GPL (>= 2)", "URL": "https://github.com/psolymos/pbapply, https://peter.solymos.org/pbapply/", "BugReports": "https://github.com/psolymos/pbapply/issues", "NeedsCompilation": "no", "Author": "Peter Solymos [aut, cre] (ORCID: ), Zygmunt Zawadzki [aut], Henrik Bengtsson [ctb], R Core Team [cph, ctb]", "Repository": "CRAN" }, "pbkrtest": { "Package": "pbkrtest", "Version": "0.5.5", "Source": "Repository", "Title": "Parametric Bootstrap, Kenward-Roger and Satterthwaite Based Methods for Test in Mixed Models", "Authors@R": "c( person(given = \"Ulrich\", family = \"Halekoh\", email = \"uhalekoh@health.sdu.dk\", role = c(\"aut\", \"cph\")), person(given = \"Søren\", family = \"Højsgaard\", email = \"sorenh@math.aau.dk\", role = c(\"aut\", \"cre\", \"cph\")) )", "Maintainer": "Søren Højsgaard ", "Description": "Computes p-values based on (a) Satterthwaite or Kenward-Rogers degree of freedom methods and (b) parametric bootstrap for mixed effects models as implemented in the 'lme4' package. 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Ryan [aut, cph], Joshua M. Ulrich [cre, aut], Ethan B. Smith [ctb], Wouter Thielen [ctb], Paul Teetor [ctb], Steve Bronder [ctb]", "Maintainer": "Joshua M. Ulrich ", "Repository": "CRAN" }, "quantreg": { "Package": "quantreg", "Version": "6.1", "Source": "Repository", "Title": "Quantile Regression", "Description": "Estimation and inference methods for models for conditional quantile functions: Linear and nonlinear parametric and non-parametric (total variation penalized) models for conditional quantiles of a univariate response and several methods for handling censored survival data. Portfolio selection methods based on expected shortfall risk are also now included. See Koenker, R. (2005) Quantile Regression, Cambridge U. Press, and Koenker, R. et al. (2017) Handbook of Quantile Regression, CRC Press, .", "Authors@R": "c( person(\"Roger\", \"Koenker\", role = c(\"cre\",\"aut\"), email = \"rkoenker@illinois.edu\"), person(\"Stephen\", \"Portnoy\", role = c(\"ctb\"), comment = \"Contributions to Censored QR code\", email = \"sportnoy@illinois.edu\"), person(c(\"Pin\", \"Tian\"), \"Ng\", role = c(\"ctb\"), comment = \"Contributions to Sparse QR code\", email = \"pin.ng@nau.edu\"), person(\"Blaise\", \"Melly\", role = c(\"ctb\"), comment = \"Contributions to preprocessing code\", email = \"mellyblaise@gmail.com\"), person(\"Achim\", \"Zeileis\", role = c(\"ctb\"), comment = \"Contributions to dynrq code essentially identical to his dynlm code\", email = \"Achim.Zeileis@uibk.ac.at\"), person(\"Philip\", \"Grosjean\", role = c(\"ctb\"), comment = \"Contributions to nlrq code\", email = \"phgrosjean@sciviews.org\"), person(\"Cleve\", \"Moler\", role = c(\"ctb\"), comment = \"author of several linpack routines\"), person(\"Yousef\", \"Saad\", role = c(\"ctb\"), comment = \"author of sparskit2\"), person(\"Victor\", \"Chernozhukov\", role = c(\"ctb\"), comment = \"contributions to extreme value inference code\"), person(\"Ivan\", \"Fernandez-Val\", role = c(\"ctb\"), comment = \"contributions to extreme value inference code\"), person(\"Martin\", \"Maechler\", role = \"ctb\", comment = c(\"tweaks (src/chlfct.f, 'tiny','Large')\", ORCID = \"0000-0002-8685-9910\")), person(c(\"Brian\", \"D\"), \"Ripley\", role = c(\"trl\",\"ctb\"), comment = \"Initial (2001) R port from S (to my everlasting shame -- how could I have been so slow to adopt R!) and for numerous other suggestions and useful advice\", email = \"ripley@stats.ox.ac.uk\"))", "Maintainer": "Roger Koenker ", "Repository": "CRAN", "Depends": [ "R (>= 3.5)", "stats", "SparseM" ], "Imports": [ "methods", "graphics", "Matrix", "MatrixModels", "survival", "MASS" ], "Suggests": [ "interp", "rgl", "logspline", "nor1mix", "Formula", "zoo", "R.rsp", "conquer" ], 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Boshnakov [aut, cre] (ORCID: , R port, R code, new C code and modifications to bibutils' C code, conversion to Bibentry (R and C code)), Chris Putman [aut] (src/*, author of the bibutils libraries, https://sourceforge.net/projects/bibutils/), Richard Mathar [ctb] (src/addsout.c), Johannes Wilm [ctb] (src/biblatexin.c, src/bltypes.c), R Core Team [ctb] (base R's bibentry and bibstyle implementation)", "Maintainer": "Georgi N. 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Provides an HTML widget that can be used in 'R Markdown' or 'Quarto' documents, 'Shiny' applications, or viewed from an R console.", "License": "MIT + file LICENSE", "URL": "https://glin.github.io/reactable/, https://github.com/glin/reactable", "BugReports": "https://github.com/glin/reactable/issues", "Depends": [ "R (>= 3.1)" ], "Imports": [ "digest", "htmltools (>= 0.5.2)", "htmlwidgets (>= 1.5.3)", "jsonlite", "reactR" ], "Suggests": [ "covr", "crosstalk", "dplyr", "fontawesome", "knitr", "leaflet", "MASS", "rmarkdown", "shiny", "sparkline", "testthat", "tippy", "V8" ], "Encoding": "UTF-8", "RoxygenNote": "7.2.1", "Config/testthat/edition": "3", "NeedsCompilation": "no", "Author": "Greg Lin [aut, cre], Tanner Linsley [ctb, cph] (React Table library), Emotion team and other contributors [ctb, cph] (Emotion library), Kent Russell [ctb, cph] (reactR package), Ramnath Vaidyanathan [ctb, cph] (htmlwidgets package), Joe Cheng [ctb, cph] (htmlwidgets package), JJ Allaire [ctb, cph] (htmlwidgets package), Yihui Xie [ctb, cph] (htmlwidgets package), Kenton Russell [ctb, cph] (htmlwidgets package), Facebook, Inc. and its affiliates [ctb, cph] (React library), FormatJS [ctb, cph] (FormatJS libraries), Feross Aboukhadijeh, and other contributors [ctb, cph] (buffer library), Roman Shtylman [ctb, cph] (process library), James Halliday [ctb, cph] (stream-browserify library), Posit Software, PBC [fnd, cph]", "Maintainer": "Greg Lin ", "Repository": "CRAN" }, "readr": { "Package": "readr", "Version": "2.2.0", "Source": "Repository", "Title": "Read Rectangular Text Data", "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Romain\", \"Francois\", role = \"ctb\"), person(\"Jennifer\", \"Bryan\", , \"jenny@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-6983-2759\")), person(\"Shelby\", \"Bearrows\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")), person(\"https://github.com/mandreyel/\", role = \"cph\", comment = \"mio library\"), person(\"Jukka\", \"Jylänki\", role = c(\"ctb\", \"cph\"), comment = \"grisu3 implementation\"), person(\"Mikkel\", \"Jørgensen\", role = c(\"ctb\", \"cph\"), comment = \"grisu3 implementation\") )", "Description": "The goal of 'readr' is to provide a fast and friendly way to read rectangular data (like 'csv', 'tsv', and 'fwf'). 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"NeedsCompilation": "yes", "Author": "Joe Cheng [aut], Timothy Mastny [aut], Richard Iannone [aut] (), Barret Schloerke [aut] (), Carson Sievert [aut, cre] (), Christophe Dervieux [ctb] (), RStudio [cph, fnd], Sass Open Source Foundation [ctb, cph] (LibSass library), Greter Marcel [ctb, cph] (LibSass library), Mifsud Michael [ctb, cph] (LibSass library), Hampton Catlin [ctb, cph] (LibSass library), Natalie Weizenbaum [ctb, cph] (LibSass library), Chris Eppstein [ctb, cph] (LibSass library), Adams Joseph [ctb, cph] (json.cpp), Trifunovic Nemanja [ctb, cph] (utf8.h)", "Maintainer": "Carson Sievert ", "Repository": "CRAN" }, "scales": { "Package": "scales", "Version": "1.4.0", "Source": "Repository", "Title": "Scale Functions for Visualization", "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"cre\", \"aut\"), comment = c(ORCID = \"0000-0002-5147-4711\")), 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(), Dana Seidel [aut], Posit Software, PBC [cph, fnd] (03wc8by49)", "Maintainer": "Thomas Lin Pedersen ", "Repository": "CRAN" }, "shiny": { "Package": "shiny", "Version": "1.14.0", "Source": "Repository", "Type": "Package", "Title": "Web Application Framework for R", "Authors@R": "c( person(\"Winston\", \"Chang\", , \"winston@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0002-1576-2126\")), person(\"Joe\", \"Cheng\", , \"joe@posit.co\", role = \"aut\"), person(\"JJ\", \"Allaire\", , \"jj@posit.co\", role = \"aut\"), person(\"Carson\", \"Sievert\", , \"carson@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-4958-2844\")), person(\"Barret\", \"Schloerke\", , \"barret@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0001-9986-114X\")), person(\"Garrick\", \"Aden-Buie\", , \"garrick@adenbuie.com\", role = \"aut\", comment = c(ORCID = \"0000-0002-7111-0077\")), person(\"Yihui\", \"Xie\", , \"yihui@posit.co\", role = \"aut\"), person(\"Jeff\", 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library\"), person(\"Denis\", \"Ineshin\", role = c(\"ctb\", \"cph\"), comment = \"ion.rangeSlider library\"), person(\"Sami\", \"Samhuri\", role = c(\"ctb\", \"cph\"), comment = \"Javascript strftime library\"), person(, \"SpryMedia Limited\", role = c(\"ctb\", \"cph\"), comment = \"DataTables library\"), person(\"Ivan\", \"Sagalaev\", role = c(\"ctb\", \"cph\"), comment = \"highlight.js library\"), person(\"R Core Team\", role = c(\"ctb\", \"cph\"), comment = \"tar implementation from R\") )", "Description": "Makes it incredibly easy to build interactive web applications with R. Automatic \"reactive\" binding between inputs and outputs and extensive prebuilt widgets make it possible to build beautiful, responsive, and powerful applications with minimal effort.", "License": "MIT + file LICENSE", "URL": "https://shiny.posit.co/, https://github.com/rstudio/shiny", "BugReports": "https://github.com/rstudio/shiny/issues", "Depends": [ "methods", "R (>= 3.1.2)" ], "Imports": [ "bslib (>= 0.6.0)", "cachem (>= 1.1.0)", "cli", "commonmark (>= 2.0.0)", "fastmap (>= 1.1.1)", "fontawesome (>= 0.4.0)", "glue (>= 1.3.2)", "grDevices", "htmltools (>= 0.5.4)", "httpuv (>= 1.5.2)", "jsonlite (>= 0.9.16)", "later (>= 1.0.0)", "lifecycle (>= 0.2.0)", "mime (>= 0.3)", "otel", "promises (>= 1.5.0)", "R6 (>= 2.0)", "rlang (>= 0.4.10)", "sourcetools", "tools", "utils", "withr", "xtable" ], "Suggests": [ "Cairo (>= 1.5-5)", "coro (>= 1.1.0)", "datasets", "DT", "dygraphs", "future", "ggplot2", "knitr (>= 1.6)", "magrittr", "markdown", "mirai", "otelsdk (>= 0.2.0)", "ragg", "reactlog (>= 1.0.0)", "rmarkdown", "sass", "shinytest2", "showtext", "testthat (>= 3.2.1)", "watcher", "yaml" ], "Config/Needs/check": "shinyjs", "Config/roxygen2/version": "8.0.0", "Config/testthat/edition": "3", "Encoding": "UTF-8", "Collate": "'app-handle.R' 'globals.R' 'app-state.R' 'app_template.R' 'bind-cache.R' 'bind-event.R' 'bookmark-state-local.R' 'bookmark-state.R' 'bootstrap-deprecated.R' 'bootstrap-layout.R' 'conditions.R' 'map.R' 'utils.R' 'bootstrap.R' 'busy-indicators-spinners.R' 'busy-indicators.R' 'cache-utils.R' 'deprecated.R' 'devmode.R' 'diagnose.R' 'extended-task.R' 'fileupload.R' 'graph.R' 'reactives.R' 'reactive-domains.R' 'history.R' 'hooks.R' 'html-deps.R' 'image-interact-opts.R' 'image-interact.R' 'imageutils.R' 'input-action.R' 'input-checkbox.R' 'input-checkboxgroup.R' 'input-date.R' 'input-daterange.R' 'input-file.R' 'input-numeric.R' 'input-password.R' 'input-radiobuttons.R' 'input-select.R' 'input-slider.R' 'input-submit.R' 'input-text.R' 'input-textarea.R' 'input-utils.R' 'insert-tab.R' 'insert-ui.R' 'jqueryui.R' 'knitr.R' 'middleware-shiny.R' 'middleware.R' 'timer.R' 'shiny.R' 'mock-session.R' 'modal.R' 'modules.R' 'notifications.R' 'otel-attr-srcref.R' 'otel-collect.R' 'otel-enable.R' 'otel-error.R' 'otel-label.R' 'otel-reactive-update.R' 'otel-session.R' 'otel-shiny.R' 'otel-with.R' 'priorityqueue.R' 'progress.R' 'react.R' 'reexports.R' 'render-cached-plot.R' 'render-plot.R' 'render-table.R' 'run-url.R' 'runapp.R' 'serializers.R' 'server-input-handlers.R' 'server-resource-paths.R' 'server.R' 'shiny-options.R' 'shiny-package.R' 'shinyapp.R' 'shinyui.R' 'shinywrappers.R' 'showcase.R' 'snapshot.R' 'staticimports.R' 'tar.R' 'test-export.R' 'test-server.R' 'test.R' 'update-input.R' 'utils-lang.R' 'utils-tags.R' 'version_bs_date_picker.R' 'version_ion_range_slider.R' 'version_jquery.R' 'version_jqueryui.R' 'version_selectize.R' 'version_strftime.R' 'viewer.R'", "NeedsCompilation": "no", "Author": "Winston Chang [aut] (ORCID: ), Joe Cheng [aut], JJ Allaire [aut], Carson Sievert [aut, cre] (ORCID: ), Barret Schloerke [aut] (ORCID: ), Garrick Aden-Buie [aut] (ORCID: ), Yihui Xie [aut], Jeff Allen [aut], Jonathan McPherson [aut], Alan Dipert [aut], Barbara Borges [aut], Posit Software, PBC [cph, fnd] (ROR: ), jQuery Foundation [cph] (jQuery library and jQuery UI library), jQuery contributors [ctb, cph] (jQuery library; authors listed in inst/www/shared/jquery-AUTHORS.txt), jQuery UI contributors [ctb, cph] (jQuery UI library; authors listed in inst/www/shared/jqueryui/AUTHORS.txt), Mark Otto [ctb] (Bootstrap library), Jacob Thornton [ctb] (Bootstrap library), Bootstrap contributors [ctb] (Bootstrap library), Twitter, Inc [cph] (Bootstrap library), Prem Nawaz Khan [ctb] (Bootstrap accessibility plugin), Victor Tsaran [ctb] (Bootstrap accessibility plugin), Dennis Lembree [ctb] (Bootstrap accessibility plugin), Srinivasu Chakravarthula [ctb] (Bootstrap accessibility plugin), Cathy O'Connor [ctb] (Bootstrap accessibility plugin), PayPal, Inc [cph] (Bootstrap accessibility plugin), Stefan Petre [ctb, cph] (Bootstrap-datepicker library), Andrew Rowls [ctb, cph] (Bootstrap-datepicker library), Brian Reavis [ctb, cph] (selectize.js library), Salmen Bejaoui [ctb, cph] (selectize-plugin-a11y library), Denis Ineshin [ctb, cph] (ion.rangeSlider library), Sami Samhuri [ctb, cph] (Javascript strftime library), SpryMedia Limited [ctb, cph] (DataTables library), Ivan Sagalaev [ctb, cph] (highlight.js library), R Core Team [ctb, cph] (tar implementation from R)", "Maintainer": "Carson Sievert ", "Repository": "CRAN" }, "shinyWidgets": { "Package": "shinyWidgets", "Version": "0.9.1", "Source": "Repository", "Title": "Custom Inputs Widgets for Shiny", "Authors@R": "c( person(\"Victor\", \"Perrier\", email = \"victor.perrier@dreamrs.fr\", role = c(\"aut\", \"cre\", \"cph\")), person(\"Fanny\", \"Meyer\", role = \"aut\"), person(\"David\", \"Granjon\", role = \"aut\"), person(\"Ian\", \"Fellows\", role = \"ctb\", comment = \"Methods for mutating vertical tabs & updateMultiInput\"), person(\"Wil\", \"Davis\", role = \"ctb\", comment = \"numericRangeInput function\"), person(\"Spencer\", \"Matthews\", role = \"ctb\", comment = \"autoNumeric methods\"), person(family = \"JavaScript and CSS libraries authors\", role = c(\"ctb\", \"cph\"), comment = \"All authors are listed in LICENSE.md\") )", "Description": "Collection of custom input controls and user interface components for 'Shiny' applications. Give your applications a unique and colorful style !", "URL": "https://github.com/dreamRs/shinyWidgets, https://dreamrs.github.io/shinyWidgets/", "BugReports": "https://github.com/dreamRs/shinyWidgets/issues", "License": "GPL-3", "Encoding": "UTF-8", "LazyData": "true", "RoxygenNote": "7.3.3", "Depends": [ "R (>= 3.1.0)" ], "Imports": [ "bslib", "sass", "shiny (>= 1.6.0)", "htmltools (>= 0.5.1)", "jsonlite", "grDevices", "rlang" ], "Suggests": [ "testthat", "covr", "ggplot2", "DT", "scales", "shinydashboard", "shinydashboardPlus" ], "NeedsCompilation": "no", "Author": "Victor Perrier [aut, cre, cph], Fanny Meyer [aut], David Granjon [aut], Ian Fellows [ctb] (Methods for mutating vertical tabs & updateMultiInput), Wil Davis [ctb] (numericRangeInput function), Spencer Matthews [ctb] (autoNumeric methods), JavaScript and CSS libraries authors [ctb, cph] (All authors are listed in LICENSE.md)", "Maintainer": "Victor Perrier ", "Repository": "CRAN" }, "shinycssloaders": { "Package": "shinycssloaders", "Version": "1.1.0", "Source": "Repository", "Title": "Add Loading Animations to a 'shiny' Output While It's Recalculating", "Authors@R": "c( person(\"Dean\",\"Attali\",email=\"daattali@gmail.com\",role=c(\"aut\",\"cre\"), comment = c(\"Maintainer/developer of shinycssloaders since 2019\", ORCID=\"0000-0002-5645-3493\")), person(\"Andras\",\"Sali\",email=\"andras.sali@alphacruncher.hu\",role=c(\"aut\"),comment=\"Original creator of shinycssloaders package\"), person(\"Luke\",\"Hass\",role=c(\"ctb\",\"cph\"),comment=\"Author of included CSS loader code\") )", "Description": "When a 'Shiny' output (such as a plot, table, map, etc.) is recalculating, it remains visible but gets greyed out. Using 'shinycssloaders', you can add a loading animation (\"spinner\") to outputs instead. By wrapping a 'Shiny' output in 'withSpinner()', a spinner will automatically appear while the output is recalculating. You can also manually show and hide the spinner, or add a full-page spinner to cover the entire page. 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\"cj@cjyetman.com\" ) )", "Maintainer": "Kent Russell ", "URL": "https://github.com/timelyportfolio/sunburstR", "BugReports": "https://github.com/timelyportfolio/sunburstR/issues", "Description": "Make interactive 'd3.js' sequence sunburst diagrams in R with the convenience and infrastructure of an 'htmlwidget'.", "License": "MIT + file LICENSE", "Imports": [ "d3r (>= 0.6.9)", "dplyr", "htmlwidgets", "htmltools" ], "Suggests": [ "jsonlite", "knitr", "markdown", "pipeR", "testthat", "tidyr (>= 0.7.0)", "rmarkdown" ], "Enhances": [ "treemap" ], "RoxygenNote": "7.2.3", "VignetteBuilder": "knitr", "NeedsCompilation": "no", "Author": "Mike Bostock [aut, cph] (d3.js library, http://d3js.org), Kerry Rodden [aut, cph] (sequences library in htmlwidgets/lib, https://gist.github.com/kerryrodden/7090426), Kevin Warne [aut, cph] (d2b sunburst library in htmlwidgets/lib, https://github.com/d2bjs/d2b), Kent Russell [aut, cre] (R interface), Florian Breitwieser [ctb] (R interface), CJ Yetman [ctb] (R 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'tidyr' contains tools for changing the shape (pivoting) and hierarchy (nesting and 'unnesting') of a dataset, turning deeply nested lists into rectangular data frames ('rectangling'), and extracting values out of string columns. It also includes tools for working with missing values (both implicit and explicit).", "License": "MIT + file LICENSE", "URL": "https://tidyr.tidyverse.org, https://github.com/tidyverse/tidyr", "BugReports": "https://github.com/tidyverse/tidyr/issues", "Depends": [ "R (>= 4.1.0)" ], "Imports": [ "cli (>= 3.4.1)", "dplyr (>= 1.1.0)", "glue", "lifecycle (>= 1.0.3)", "magrittr", "purrr (>= 1.0.1)", "rlang (>= 1.1.1)", "stringr (>= 1.5.0)", "tibble (>= 2.1.1)", "tidyselect (>= 1.2.1)", "utils", "vctrs (>= 0.5.2)" ], "Suggests": [ "covr", "data.table", "knitr", "readr", "repurrrsive (>= 1.1.0)", "rmarkdown", "testthat (>= 3.0.0)" ], "LinkingTo": [ "cpp11 (>= 0.4.0)" ], "VignetteBuilder": "knitr", "Config/build/compilation-database": "true", "Config/Needs/website": "tidyverse/tidytemplate", "Config/testthat/edition": "3", "Encoding": "UTF-8", "LazyData": "true", "RoxygenNote": "7.3.3", "NeedsCompilation": "yes", "Author": "Hadley Wickham [aut, cre], Davis Vaughan [aut], Maximilian Girlich [aut], Kevin Ushey [ctb], Posit Software, PBC [cph, fnd]", "Maintainer": "Hadley Wickham ", "Repository": "CRAN" }, "tidyselect": { "Package": "tidyselect", "Version": "1.2.1", "Source": "Repository", "Title": "Select from a Set of Strings", "Authors@R": "c( person(\"Lionel\", \"Henry\", , \"lionel@posit.co\", role = c(\"aut\", \"cre\")), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", "Description": "A backend for the selecting functions of the 'tidyverse'. It makes it easy to implement select-like functions in your own packages in a way that is consistent with other 'tidyverse' interfaces for selection.", "License": "MIT + file LICENSE", "URL": "https://tidyselect.r-lib.org, https://github.com/r-lib/tidyselect", "BugReports": "https://github.com/r-lib/tidyselect/issues", "Depends": [ "R (>= 3.4)" ], "Imports": [ "cli (>= 3.3.0)", "glue (>= 1.3.0)", "lifecycle (>= 1.0.3)", "rlang (>= 1.0.4)", "vctrs (>= 0.5.2)", "withr" ], "Suggests": [ "covr", "crayon", "dplyr", "knitr", "magrittr", "rmarkdown", "stringr", "testthat (>= 3.1.1)", "tibble (>= 2.1.3)" ], "VignetteBuilder": "knitr", "ByteCompile": "true", "Config/testthat/edition": "3", "Config/Needs/website": "tidyverse/tidytemplate", "Encoding": "UTF-8", "RoxygenNote": "7.3.0.9000", "NeedsCompilation": "yes", "Author": "Lionel Henry [aut, cre], Hadley Wickham [aut], Posit Software, PBC [cph, fnd]", "Maintainer": "Lionel Henry ", "Repository": "CRAN" }, "timeDate": { "Package": "timeDate", "Version": "4052.112", "Source": "Repository", "Title": "Rmetrics - Chronological and Calendar Objects", "Authors@R": "c(person(\"Diethelm\", \"Wuertz\", role=\"aut\", comment = \"original code\") , person(\"Tobias\", \"Setz\", role = c(\"aut\"), email = \"tobias.setz@live.com\") , person(\"Yohan\", \"Chalabi\", role = \"aut\") , person(\"Martin\",\"Maechler\", role = \"ctb\", email = \"maechler@stat.math.ethz.ch\", comment = c(ORCID = \"0000-0002-8685-9910\")) , person(given = c(\"Joe\", \"W.\"), family = \"Byers\", role = \"ctb\") , person(given = c(\"Georgi\", \"N.\"), family = \"Boshnakov\", role = c(\"cre\", \"aut\"), email = \"georgi.boshnakov@manchester.ac.uk\", comment = c(ORCID = \"0000-0003-2839-346X\")) )", "Description": "The 'timeDate' class fulfils the conventions of the ISO 8601 standard as well as of the ANSI C and POSIX standards. 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See for more details.", "Depends": [ "R (>= 3.3)" ], "License": "GPL (>= 3)", "Encoding": "UTF-8", "LinkingTo": [ "cpp11 (>= 0.2.7)" ], "Suggests": [ "testthat (>= 0.7.1.99)", "knitr" ], "SystemRequirements": "A system with zoneinfo data (e.g. /usr/share/zoneinfo). On Windows the zoneinfo included with R is used.", "BugReports": "https://github.com/vspinu/timechange/issues", "URL": "https://github.com/vspinu/timechange/", "RoxygenNote": "7.2.1", "NeedsCompilation": "yes", "Author": "Vitalie Spinu [aut, cre], Google Inc. [ctb, cph]", "Maintainer": "Vitalie Spinu ", "Repository": "CRAN" }, "tinytex": { "Package": "tinytex", "Version": "0.61", "Source": "Repository", "Type": "Package", "Title": "Helper Functions to Install and Maintain TeX Live, and Compile LaTeX Documents", "Authors@R": "c( person(\"Yihui\", \"Xie\", role = c(\"aut\", \"cre\", \"cph\"), email = \"xie@yihui.name\", comment = c(ORCID = \"0000-0003-0645-5666\")), person(given = \"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"Christophe\", \"Dervieux\", role = \"ctb\", comment = c(ORCID = \"0000-0003-4474-2498\")), person(\"Devon\", \"Ryan\", role = \"ctb\", email = \"dpryan79@gmail.com\", comment = c(ORCID = \"0000-0002-8549-0971\")), person(\"Ethan\", \"Heinzen\", role = \"ctb\"), person(\"Fernando\", \"Cagua\", role = \"ctb\"), person() )", "Description": "Helper functions to install and maintain the 'LaTeX' distribution named 'TinyTeX' (), a lightweight, cross-platform, portable, and easy-to-maintain version of 'TeX Live'. This package also contains helper functions to compile 'LaTeX' documents, and install missing 'LaTeX' packages automatically.", "Imports": [ "xfun (>= 0.48)" ], "Suggests": [ "testit", "rstudioapi" ], "License": "MIT + file LICENSE", "URL": "https://github.com/rstudio/tinytex", "BugReports": "https://github.com/rstudio/tinytex/issues", "Encoding": "UTF-8", "RoxygenNote": "7.3.3", "NeedsCompilation": "no", "Author": "Yihui Xie [aut, cre, cph] (ORCID: ), Posit Software, PBC [cph, fnd], Christophe Dervieux [ctb] (ORCID: ), Devon Ryan [ctb] (ORCID: ), Ethan Heinzen [ctb], Fernando Cagua [ctb]", "Maintainer": "Yihui Xie ", "Repository": "CRAN" }, "tippy": { "Package": "tippy", "Version": "0.1.0", "Source": "Repository", "Title": "Add Tooltips to 'R markdown' Documents or 'Shiny' Apps", "Authors@R": "person(\"John\", \"Coene\", email = \"jcoenep@gmail.com\", role = c(\"aut\", \"cre\"))", "Description": "'Htmlwidget' of 'Tippyjs' to add tooltips to 'Shiny' apps and 'R markdown' documents.", "Depends": [ "R (>= 3.4.0)" ], "License": "MIT + file LICENSE", "Encoding": "UTF-8", "LazyData": "true", "Imports": [ "htmlwidgets", "htmltools", "shiny", "jsonlite" ], "RoxygenNote": "7.1.1", "URL": "https://tippy.john-coene.com/", "BugReports": "https://github.com/JohnCoene/tippy/issues", "NeedsCompilation": "no", "Author": "John Coene [aut, cre]", "Maintainer": "John Coene ", "Repository": "CRAN" }, "triebeard": { "Package": "triebeard", "Version": "0.4.1", "Source": "Repository", "Type": "Package", "Title": "'Radix' Trees in 'Rcpp'", "Author": "Os Keyes [aut, cre], Drew Schmidt [aut], Yuuki Takano [cph]", "Maintainer": "Os Keyes ", "Description": "'Radix trees', or 'tries', are key-value data structures optimised for efficient lookups, similar in purpose to hash tables. 'triebeard' provides an implementation of 'radix trees' for use in R programming and in developing packages with 'Rcpp'.", "License": "MIT + file LICENSE", "LinkingTo": [ "Rcpp" ], "Encoding": "UTF-8", "Imports": [ "Rcpp" ], "RoxygenNote": "7.1.2", "Suggests": [ "knitr", "rmarkdown", "testthat" ], "VignetteBuilder": "knitr", "URL": "https://github.com/Ironholds/triebeard/", "BugReports": "https://github.com/Ironholds/triebeard/issues", "Date": "2023-03-04", "NeedsCompilation": "yes", "Repository": "CRAN" }, "tseries": { "Package": "tseries", "Version": "0.10-63", "Source": "Repository", "Encoding": "UTF-8", "Title": "Time Series Analysis and Computational Finance", "Authors@R": "c(person(\"Adrian\", \"Trapletti\", role = \"aut\", email = \"adrian@trapletti.org\"), person(\"Kurt\", \"Hornik\", role = c(\"aut\", \"cre\"), email = \"Kurt.Hornik@R-project.org\", comment = c(ORCID = \"0000-0003-4198-9911\")), person(\"Blake\", \"LeBaron\", role = \"ctb\", comment = \"BDS test code\"))", "Description": "Time series analysis and computational finance.", "Depends": [ "R (>= 3.4.0)" ], "Imports": [ "graphics", "stats", "utils", "quadprog", "zoo", "quantmod (>= 0.4-9)" ], "License": "GPL-2 | GPL-3", "NeedsCompilation": "yes", "Author": "Adrian Trapletti [aut], Kurt Hornik [aut, cre] (ORCID: ), Blake LeBaron [ctb] (BDS test code)", "Maintainer": "Kurt Hornik ", "Repository": "CRAN" }, "tzdb": { "Package": "tzdb", "Version": "0.5.0", "Source": "Repository", "Title": "Time Zone Database Information", "Authors@R": "c( person(\"Davis\", \"Vaughan\", , \"davis@posit.co\", role = c(\"aut\", \"cre\")), person(\"Howard\", \"Hinnant\", role = \"cph\", comment = \"Author of the included date library\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", "Description": "Provides an up-to-date copy of the Internet Assigned Numbers Authority (IANA) Time Zone Database. 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Headers are provided for calendar specific calculations, along with a limited interface for time zone manipulations.", "License": "MIT + file LICENSE", "URL": "https://tzdb.r-lib.org, https://github.com/r-lib/tzdb", "BugReports": "https://github.com/r-lib/tzdb/issues", "Depends": [ "R (>= 4.0.0)" ], "Suggests": [ "covr", "testthat (>= 3.0.0)" ], "LinkingTo": [ "cpp11 (>= 0.5.2)" ], "Biarch": "yes", "Config/Needs/website": "tidyverse/tidytemplate", "Config/testthat/edition": "3", "Encoding": "UTF-8", "RoxygenNote": "7.3.2", "NeedsCompilation": "yes", "Author": "Davis Vaughan [aut, cre], Howard Hinnant [cph] (Author of the included date library), Posit Software, PBC [cph, fnd]", "Maintainer": "Davis Vaughan ", "Repository": "CRAN" }, "urca": { "Package": "urca", "Version": "1.3-4", "Source": "Repository", "Date": "2024-05-25", "Title": "Unit Root and Cointegration Tests for Time Series Data", "Authors@R": "c(person(\"Bernhard\", \"Pfaff\", email = \"bernhard@pfaffikus.de\", role = c(\"aut\", \"cre\")), person(\"Eric\", \"Zivot\",email = \"ezivot@u.washington.edu\", role = \"ctb\"), person(\"Matthieu\", \"Stigler\", role = \"ctb\"))", "Depends": [ "R (>= 2.0.0)", "methods" ], "Imports": [ "nlme", "graphics", "stats" ], "LazyLoad": "yes", "Description": "Unit root and cointegration tests encountered in applied econometric analysis are implemented.", "License": "GPL (>= 2)", "NeedsCompilation": "yes", "Author": "Bernhard Pfaff [aut, cre], Eric Zivot [ctb], Matthieu Stigler [ctb]", "Maintainer": "Bernhard Pfaff ", "Repository": "CRAN" }, "urltools": { "Package": "urltools", "Version": "1.7.3.1", "Source": "Repository", "Type": "Package", "Title": "Vectorised Tools for URL Handling and Parsing", "Date": "2019-04-14", "Authors@R": "c(person(given = \"Os\", family = \"Keyes\", role = c(\"aut\", \"cre\"), email = \"ironholds@gmail.com\"), person(given = \"Jay\", family = \"Jacobs\", role = \"aut\"), person(given = \"Drew\", family = \"Schmidt\", role = \"aut\"), person(given = \"Mark\", family = \"Greenaway\", role = \"ctb\"), person(given = \"Bob\", family = \"Rudis\", role = \"ctb\"), person(given = \"Alex\", family = \"Pinto\", role = \"ctb\"), person(given = \"Maryam\", family = \"Khezrzadeh\", role = \"ctb\"), person(given = \"Peter\", family = \"Meilstrup\", role = \"ctb\"), person(given = c(\"Adam\", \"M.\"), family = \"Costello\", role = \"cph\"), person(given = \"Jeff\", family = \"Bezanson\", role = \"cph\"), person(given = \"Peter\", family = \"Meilstrup\", role = \"ctb\"), person(given = \"Xueyuan\", family = \"Jiang\", role = \"ctb\"))", "Description": "A toolkit for all URL-handling needs, including encoding and decoding, parsing, parameter extraction and modification. All functions are designed to be both fast and entirely vectorised. It is intended to be useful for people dealing with web-related datasets, such as server-side logs, although may be useful for other situations involving large sets of URLs.", "License": "MIT + file LICENSE", "LazyData": "TRUE", "LinkingTo": [ "Rcpp" ], "Imports": [ "Rcpp", "methods", "triebeard" ], "Suggests": [ "testthat", "knitr" ], "URL": "https://github.com/Ironholds/urltools/", "BugReports": "https://github.com/Ironholds/urltools/issues", "VignetteBuilder": "knitr", "RoxygenNote": "6.1.1", "Encoding": "UTF-8", "Depends": [ "R (>= 2.10)" ], "NeedsCompilation": "yes", "Repository": "CRAN", "Author": "Os Keyes [aut, cre], Jay Jacobs [aut], Drew Schmidt [aut], Mark Greenaway [ctb], Bob Rudis [ctb], Alex Pinto [ctb], Maryam Khezrzadeh [ctb], Peter Meilstrup [ctb], Adam M. 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Dahl [aut], David Scott [aut, cre], Charles Roosen [aut], Arni Magnusson [aut], Jonathan Swinton [aut], Ajay Shah [ctb], Arne Henningsen [ctb], Benno Puetz [ctb], Bernhard Pfaff [ctb], Claudio Agostinelli [ctb], Claudius Loehnert [ctb], David Mitchell [ctb], David Whiting [ctb], Fernando da Rosa [ctb], Guido Gay [ctb], Guido Schulz [ctb], Ian Fellows [ctb], Jeff Laake [ctb], John Walker [ctb], Jun Yan [ctb], Liviu Andronic [ctb], Markus Loecher [ctb], Martin Gubri [ctb], Matthieu Stigler [ctb], Robert Castelo [ctb], Seth Falcon [ctb], Stefan Edwards [ctb], Sven Garbade [ctb], Uwe Ligges [ctb]" }, "xts": { "Package": "xts", "Version": "0.14.3", "Source": "Repository", "Type": "Package", "Title": "eXtensible Time Series", "Authors@R": "c( person(given=c(\"Jeffrey\",\"A.\"), family=\"Ryan\", role=c(\"aut\",\"cph\")), person(given=c(\"Joshua\",\"M.\"), family=\"Ulrich\", role=c(\"cre\",\"aut\"), email=\"josh.m.ulrich@gmail.com\"), person(given=\"Ross\", family=\"Bennett\", role=\"ctb\"), person(given=\"Corwin\", family=\"Joy\", role=\"ctb\") )", "Depends": [ "R (>= 3.6.0)", "zoo (>= 1.7-12)" ], "Imports": [ "methods" ], "LinkingTo": [ "zoo" ], "Suggests": [ "timeSeries", "timeDate", "tseries", "chron", "tinytest" ], "LazyLoad": "yes", "Description": "Provide for uniform handling of R's different time-based data classes by extending zoo, maximizing native format information preservation and allowing for user level customization and extension, while simplifying cross-class interoperability.", "License": "GPL (>= 2)", "URL": "https://joshuaulrich.github.io/xts/, https://github.com/joshuaulrich/xts", "BugReports": "https://github.com/joshuaulrich/xts/issues", "Encoding": "UTF-8", "NeedsCompilation": "yes", "Author": "Jeffrey A. Ryan [aut, cph], Joshua M. Ulrich [cre, aut], Ross Bennett [ctb], Corwin Joy [ctb]", "Maintainer": "Joshua M. Ulrich ", "Repository": "CRAN" }, "yaml": { "Package": "yaml", "Version": "2.3.12", "Source": "Repository", "Type": "Package", "Title": "Methods to Convert R Data to YAML and Back", "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"cre\", comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Shawn\", \"Garbett\", , \"shawn.garbett@vumc.org\", role = \"ctb\", comment = c(ORCID = \"0000-0003-4079-5621\")), person(\"Jeremy\", \"Stephens\", role = c(\"aut\", \"ctb\")), person(\"Kirill\", \"Simonov\", role = \"aut\"), person(\"Yihui\", \"Xie\", role = \"ctb\", comment = c(ORCID = \"0000-0003-0645-5666\")), person(\"Zhuoer\", \"Dong\", role = \"ctb\"), person(\"Jeffrey\", \"Horner\", role = \"ctb\"), person(\"reikoch\", role = \"ctb\"), person(\"Will\", \"Beasley\", role = \"ctb\", comment = c(ORCID = \"0000-0002-5613-5006\")), person(\"Brendan\", \"O'Connor\", role = \"ctb\"), person(\"Michael\", \"Quinn\", role = \"ctb\"), person(\"Charlie\", \"Gao\", role = \"ctb\"), person(c(\"Gregory\", \"R.\"), \"Warnes\", role = \"ctb\"), person(c(\"Zhian\", \"N.\"), \"Kamvar\", role = \"ctb\") )", "Description": "Implements the 'libyaml' 'YAML' 1.1 parser and emitter () for R.", "License": "BSD_3_clause + file LICENSE", "URL": "https://yaml.r-lib.org, https://github.com/r-lib/yaml/", "BugReports": "https://github.com/r-lib/yaml/issues", "Suggests": [ "knitr", "rmarkdown", "testthat (>= 3.0.0)" ], "Config/testthat/edition": "3", "Config/Needs/website": "tidyverse/tidytemplate", "Encoding": "UTF-8", "RoxygenNote": "7.3.3", "VignetteBuilder": "knitr", "NeedsCompilation": "yes", "Author": "Hadley Wickham [cre] (ORCID: ), Shawn Garbett [ctb] (ORCID: ), Jeremy Stephens [aut, ctb], Kirill Simonov [aut], Yihui Xie [ctb] (ORCID: ), Zhuoer Dong [ctb], Jeffrey Horner [ctb], reikoch [ctb], Will Beasley [ctb] (ORCID: ), Brendan O'Connor [ctb], Michael Quinn [ctb], Charlie Gao [ctb], Gregory R. Warnes [ctb], Zhian N. Kamvar [ctb]", "Maintainer": "Hadley Wickham ", "Repository": "CRAN" }, "zip": { "Package": "zip", "Version": "3.0.2", "Source": "Repository", "Title": "Cross-Platform 'zip' Compression", "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Kuba\", \"Podgórski\", role = \"ctb\"), person(\"Rich\", \"Geldreich\", role = \"ctb\"), person(\"Arm Limited\", role = c(\"ctb\", \"cph\"), comment = \"bundled Mbed TLS crypto subset in src/mbedtls/ (Apache-2.0)\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", "Description": "Cross-Platform 'zip' Compression Library. A replacement for the 'zip' function, that does not require any additional external tools on any platform.", "License": "MIT + file LICENSE", "URL": "https://github.com/r-lib/zip, https://r-lib.github.io/zip/", "BugReports": "https://github.com/r-lib/zip/issues", "LinkingTo": [ "cli" ], "Suggests": [ "callr", "cli", "curl", "pillar", "processx", "R6", "testthat", "webfakes", "withr" ], "Config/Needs/website": "tidyverse/tidytemplate", "Config/testthat/edition": "3", "Config/testthat/parallel": "true", "Config/testthat/start-first": "large-files, http", "Config/usethis/last-upkeep": "2025-05-07", "Encoding": "UTF-8", "Config/roxygen2/version": "8.0.0", "NeedsCompilation": "yes", "Author": "Gábor Csárdi [aut, cre], Kuba Podgórski [ctb], Rich Geldreich [ctb], Arm Limited [ctb, cph] (bundled Mbed TLS crypto subset in src/mbedtls/ (Apache-2.0)), Posit Software, PBC [cph, fnd] (ROR: )", "Maintainer": "Gábor Csárdi ", "Repository": "CRAN" }, "zoo": { "Package": "zoo", "Version": "1.9-0", "Source": "Repository", "Date": "2026-07-30", "Title": "S3 Infrastructure for Regular and Irregular Time Series (Z's Ordered Observations)", "Authors@R": "c(person(given = \"Achim\", family = \"Zeileis\", role = c(\"aut\", \"cre\"), email = \"Achim.Zeileis@R-project.org\", comment = c(ORCID = \"0000-0003-0918-3766\")), person(given = \"Gabor\", family = \"Grothendieck\", role = \"aut\", email = \"ggrothendieck@gmail.com\"), person(given = c(\"Jeffrey\", \"A.\"), family = \"Ryan\", role = \"aut\", email = \"jeff.a.ryan@gmail.com\"), person(given = c(\"Joshua\", \"M.\"), family = \"Ulrich\", role = \"ctb\", email = \"josh.m.ulrich@gmail.com\"), person(given = \"Felix\", family = \"Andrews\", role = \"ctb\", email = \"felix@nfrac.org\"))", "Description": "An S3 class with methods for working with regular and irregular time series. The class stores data as numeric vectors/matrices (or factors) along with a time index of arbitrary class (including numeric, Date, POSIXct, chron, yearmon, yearqtr, etc.). Functions and methods are consistent with the ts class and base R and also extend standard generics. Tools include: Data import/export, coercion, visualization (with base R, 'ggplot2', 'lattice', 'tinyplot'), alignment and merging, aggregation, lags and subsets, rolling analytics, and time-based interpolation/filling. The design is introduced in Zeileis and Grothendieck (2005) .", "Depends": [ "R (>= 3.1.0)", "stats" ], "Suggests": [ "AER", "coda", "chron", "ggplot2 (>= 3.5.0)", "knitr", "mondate", "scales", "stinepack", "strucchange", "timeDate", "timeSeries (>= 4021.104)", "tinyplot", "tis", "tseries", "xts" ], "Imports": [ "utils", "graphics", "grDevices", "lattice (>= 0.20-27)" ], "License": "GPL-2 | GPL-3", "VignetteBuilder": "knitr", "URL": "https://zeileis.codeberg.page/zoo/", "BugReports": "https://codeberg.org/zeileis/zoo/issues", "NeedsCompilation": "yes", "Author": "Achim Zeileis [aut, cre] (ORCID: ), Gabor Grothendieck [aut], Jeffrey A. Ryan [aut], Joshua M. Ulrich [ctb], Felix Andrews [ctb]", "Maintainer": "Achim Zeileis ", "Repository": "CRAN" } } }