OHPI: Ontology of Host-Pathogen Interactions
type: Ontology
version IRI: ohpi-full.owl
Contributor: Bin Zhao
creator: Edison Ong
creator: Yongqun He (Oliver)
creator: Yu Lin (Asiyah)
description: OHPI is a biomedical ontology in the area of host-pathogen interactions. OHPI is developed by following the OBO Foundry Principles (e.g., openness and collaboration).
Format: OWL-DL
subject: A biomedical ontology in the area of host-pathogen interactions.
license: http://creativecommons.org/licenses/by/4.0/

BFO OWL specification label
type: AnnotationProperty
editor preferred label: BFO OWL specification label
editor preferred label: BFO OWL规范标签 @zh
definition: Relates an entity in the ontology to the name of the variable that is used to represent it in the code that generates the BFO OWL file from the lispy specification.
definition: 将本体中的实体关联到用于在代码中表示它的变量的名称，这些代码从lispy规范生成BFO OWL 文件。 @zh
curator note: Really of interest to developers only
curator note: 只对开发人员感兴趣 @zh
label: BFO OWL规范标签
sub property of: label

BFO CLIF specification label
type: AnnotationProperty
editor preferred label: BFO CLIF specification label
editor preferred label: BFO CLIF规范标签 @zh
definition: Relates an entity in the ontology to the term that is used to represent it in the the CLIF specification of BFO2
definition: 将本体中的实体关联到用于在BFO2 CLIF规范中表示它的术语上。 @zh
definition source: Person:Alan Ruttenberg
curator note: Really of interest to developers only
curator note: 只对开发人员感兴趣 @zh
label: BFO CLIF规范标签
sub property of: label

细胞系LINCS ID
type: AnnotationProperty
definition: An annotation property that represents an ID used in the NIH LINCS project.
definition: An annotation property that represents an LINCS ID of a cell line.
definition: 表示细胞系的LINCS ID的注释属性。
definition editor: Oliver He, Jiangan Xie
definition editor: Oliver He, Jiangan Xie, Jie Zheng
label: Cell line LINCS ID
label: LINCS ID

editor preferred label
type: AnnotationProperty
editor preferred label: editor preferred label
editor preferred label: editor preferred term
editor preferred label: editor preferred term~editor preferred label
editor preferred label: 编辑首选术语 @zh
editor preferred label: 编辑首选标签 @zh
has curation status: IAO_0000122
definition: The concise, meaningful, and human-friendly name for a class or property preferred by the ontology developers. (US-English)
definition: 对于一类或属性的简洁的、有意义的、与人类友好的名称由本体开发商首选。 （美国英语） @zh
definition editor: PERSON:Daniel Schober
definition source: GROUP:OBI:<http://purl.obolibrary.org/obo/obi>
label: editor preferred term
label: editor preferred term~editor preferred label
label: 编辑首选术语
label: 编辑首选术语~编辑首选标签
label: 编辑首选标签

example of usage
type: AnnotationProperty
editor preferred label: example
editor preferred label: example of usage
editor preferred label: 例子 @zh
editor preferred label: 用法示例 @zh
has curation status: IAO_0000122
definition: A phrase describing how a class name should be used. May also include other kinds of examples that facilitate immediate understanding of a class semantics, such as widely known prototypical subclasses or instances of the class. Although essential for high level terms, examples for low level terms (e.g., Affymetrix HU133 array) are not
definition: A phrase describing how a term should be used and/or a citation to a work which uses it. May also include other kinds of examples that facilitate immediate understanding, such as widely know prototypes or instances of a class, or cases where a relation is said to hold.
definition: 短语描述一个类的名字应该如何使用。也可包括其他类型有助于直接理解类的语义的例子，如广为人知的类的原型子类或实例。虽然高水平的术语必不可少，对于低级别术语的示例（例如，Affymetrix HU133阵列）不 @zh
definition editor: PERSON:Daniel Schober
definition source: GROUP:OBI:<http://purl.obolibrary.org/obo/obi>
数据库_交叉_引用: IAO:0000112
有_obo_命名空间: uberon
id: example_of_usage
is metadata tag: true
shorthand: example_of_usage
label: 用法示例

has curation status
type: AnnotationProperty
editor preferred label: has curation status
editor preferred label: 有管理状态 @zh
definition editor: PERSON:Alan Ruttenberg
definition editor: PERSON:Bill Bug
definition editor: PERSON:Melanie Courtot
definition source: OBI_0000281
label: 有管理状态

definition
type: AnnotationProperty
editor preferred label: definition
editor preferred label: textual definition
editor preferred label: 定义 @zh
has curation status: IAO_0000122
definition: OBI的官方定义，解释类或属性的含义。应该是亚里士多德式的，形式化和规范化的。 可以通过口语定义进行扩充。 @zh
definition: The official OBI definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions.
definition: The official definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions.
definition: 官方的定义，解释类或属性的含义。应该是亚里士多德式的，形式化和规范化的。 可以通过口语定义进行扩充。 @zh
editor note: 2012-04-05: Barry Smith OBI的官方定义解释了一个类或属性的含义：'应该是亚里士多德式的，形式化和规范化的。可以用口语定义'是糟糕的。 您能解决这样的问题吗？ 解释关于类或属性的表达含义的必要和充分条件的陈述。 Alan Ruttenberg 您提出的定义是一个合理的备选，除非它很常见，没有给出必要和充分的条件。大多数情况下它们是必要的，偶尔是必要的，充分的或者仅仅仅充分的。它们通常使用不是自己定义的术语，因此它们实际上不能通过这些标准进行评估。 关于拟议定义的具体内容： 我们没有“含义”，或“表达”或“属性”的定义。对于在预期意义上的“参考”，我认为我们使用术语“指示”。对于'表达'，我认为我们和你的意思是符号，或标识符。对于“含义”，它不同于类和属性。对于类，我们希望文档能够让读者确定一个实体是否是该类的实例。对于属性，让我们的目标读者决定，给定一对潜在的关系，判断关系成立的断言正确与否。 “目标读者”部分表明我们也指定了我们期望的能够理解定义的人，并且概括了人类和计算机读者以包含文本和逻辑定义。 就我个人而言，我更愿意削弱对文档的定义，并指出什么是可取的。 我们还有一个悬而未决的问题，就是如何针对不同的受众定位不同的定义。临床读者阅读chebi需要来自受过化学训练的受众的不同类型的定义文档/定义，同样需要一个适合本体工作者的定义。
editor note: 2012-04-05: Barry Smith The official OBI definition, explaining the meaning of a class or property: 'Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions' is terrible. Can you fix to something like: A statement of necessary and sufficient conditions explaining the meaning of an expression referring to a class or property. Alan Ruttenberg Your proposed definition is a reasonable candidate, except that it is very common that necessary and sufficient conditions are not given. Mostly they are necessary, occasionally they are necessary and sufficient or just sufficient. Often they use terms that are not themselves defined and so they effectively can't be evaluated by those criteria. On the specifics of the proposed definition: We don't have definitions of 'meaning' or 'expression' or 'property'. For 'reference' in the intended sense I think we use the term 'denotation'. For 'expression', I think we you mean symbol, or identifier. For 'meaning' it differs for class and property. For class we want documentation that let's the intended reader determine whether an entity is instance of the class, or not. For property we want documentation that let's the intended reader determine, given a pair of potential relata, whether the assertion that the relation holds is true. The 'intended reader' part suggests that we also specify who, we expect, would be able to understand the definition, and also generalizes over human and computer reader to include textual and logical definition. Personally, I am more comfortable weakening definition to documentation, with instructions as to what is desirable. We also have the outstanding issue of how to aim different definitions to different audiences. A clinical audience reading chebi wants a different sort of definition documentation/definition from a chemistry trained audience, and similarly there is a need for a definition that is adequate for an ontologist to work with.
definition editor: PERSON:Daniel Schober
definition source: GROUP:OBI:<http://purl.obolibrary.org/obo/obi>
label: textual definition
label: 定义
label: 文本定义

editor note
type: AnnotationProperty
editor preferred label: editor note
editor preferred label: 编者注 @zh
has curation status: IAO_0000122
definition: An administrative note intended for its editor. It may not be included in the publication version of the ontology, so it should contain nothing necessary for end users to understand the ontology.
definition: 管理者注释用于其编辑器。它可能不包含在本体的出版版本中，所以它应该不包含最终用户了解本体所需的信息。 @zh
definition editor: PERSON:Daniel Schober
definition source: GROUP:OBI:<http://purl.obfoundry.org/obo/obi>
has db xref: IAO:0000116
has OBO namespace: uberon
id: editor_note
id: 编辑_注释 @zh
is metadata tag: true
shorthand: editor_note
shorthand: 编辑_注释 @zh
数据库_交叉_引用: IAO:0000116
有_obo_命名空间: uberon
is metadata tag: 1
label: 编者注

definition editor
type: AnnotationProperty
editor preferred label: definition editor
editor preferred label: term editor
editor preferred label: 术语编辑者 @zh
has curation status: IAO_0000122
definition: Name of editor entering the definition in the file. The definition editor is a point of contact for information regarding the term. The definition editor may be, but is not always, the author of the definition, which may have been worked upon by several people
definition: Name of editor entering the term in the file. The term editor is a point of contact for information regarding the term. The term editor may be, but is not always, the author of the definition, which may have been worked upon by several people
definition: 输入文件中术语编辑者的名称。术语编辑者是有关术语的信息交汇点。术语编辑者可以是，但并不总是，定义的作者，这可能是由几个人完成 @zh
editor note: 20110707, MC: label update to term editor and definition modified accordingly. See http://code.google.com/p/information-artifact-ontology/issues/detail?id=115.
editor note: 20110707, MC: label update to term editor and definition modified accordingly. See https://github.com/information-artifact-ontology/IAO/issues/115.
editor note: 20110707，MC：术语编辑和定义进行相应的修改。见http://code.google.com/p/information-artifact-ontology/issues/detail?id=115。 @zh
definition editor: PERSON:Daniel Schober
definition source: GROUP:OBI:<http://purl.obolibrary.org/obo/obi>
label: term editor
label: 术语编辑者

alternative term
type: AnnotationProperty
editor preferred label: alternative term
editor preferred label: 替代术语 @zh
has curation status: IAO_0000125
definition: An alternative name for a class or property which means the same thing as the preferred name (semantically equivalent)
definition: 一类或属性的替代名称，这意味着与所述首选名称同样的事物（语义上等价） @zh
definition editor: PERSON:Daniel Schober
definition source: GROUP:OBI:<http://purl.obolibrary.org/obo/obi>
label: 替代术语

definition source
type: AnnotationProperty
editor preferred label: definition source
editor preferred label: 定义来源 @zh
has curation status: IAO_0000122
definition: Formal citation, e.g. identifier in external database to indicate / attribute source(s) for the definition. Free text indicate / attribute source(s) for the definition. EXAMPLE: Author Name, URI, MeSH Term C04, PUBMED ID, Wiki uri on 31.01.2007.
definition: formal citation, e.g. identifier in external database to indicate / attribute source(s) for the definition. Free text indicate / attribute source(s) for the definition. EXAMPLE: Author Name, URI, MeSH Term C04, PUBMED ID, Wiki uri on 31.01.2007
definition: 正式引用，例如在外部数据库中的标识符，用于表示/定义的属性源（S）。自由文本表示/为定义属性源（S）。实例：在2007年1月31日的作者姓名，URI，MeSH术语C04，PUBMEDID，维基uri @zh
definition editor: PERSON:Daniel Schober
definition source: Discussion on obo-discuss mailing-list, see http://bit.ly/hgm99w
definition source: GROUP:OBI:<http://purl.obolibrary.org/obo/obi>
definition source: 论OBO-讨论邮件-列表，请参阅http://bit.ly/hgm99w @zh
label: 定义来源

Axiom
annotated source: definition source
annotated property: definition
annotated target: Formal citation, e.g. identifier in external database to indicate / attribute source(s) for the definition. Free text indicate / attribute source(s) for the definition. EXAMPLE: Author Name, URI, MeSH Term C04, PUBMED ID, Wiki uri on 31.01.2007.
数据库_交叉_引用: url:http://purl.obolibrary.org/obo/iao.owl

has obsolescence reason
type: AnnotationProperty
editor preferred label: has obsolescence reason
definition: Relates an annotation property to an obsolescence reason. The values of obsolescence reasons come from a list of predefined terms, instances of the class obsolescence reason specification.
definition editor: PERSON:Alan Ruttenberg
definition editor: PERSON:Melanie Courtot

curator note
type: AnnotationProperty
editor preferred label: curator note
editor preferred label: 管理者注释 @zh
has curation status: IAO_0000122
definition: An administrative note of use for a curator but of no use for a user
definition: 管理者注释对管理者有用对用户无用 @zh
definition editor: PERSON:Alan Ruttenberg
has db xref: IAO:0000232
has OBO namespace: uberon
id: curator_notes
id: 管理者_注释 @zh
is metadata tag: true
shorthand: curator_notes
shorthand: 管理者_注释 @zh
数据库_交叉_引用: IAO:0000232
有_obo_命名空间: uberon
is metadata tag: 1
label: curator notes
label: 管理者注释

term tracker item
type: AnnotationProperty
editor preferred label: term tracker item
example of usage: the URI for an OBI Terms ticket at sourceforge, such as https://sourceforge.net/p/obi/obi-terms/772/
has curation status: IAO_0000125
definition: An IRI or similar locator for a request or discussion of an ontology term.
definition editor: Person: Jie Zheng, Chris Stoeckert, Alan Ruttenberg
definition source: Person: Jie Zheng, Chris Stoeckert, Alan Ruttenberg
comment: The 'tracker item' can associate a tracker with a specific ontology term.

ontology term requester
type: AnnotationProperty
has curation status: IAO_0000125
definition: The name of the person, project, or organization that motivated inclusion of an ontology term by requesting its addition.
definition editor: Person: Jie Zheng, Chris Stoeckert, Alan Ruttenberg
definition source: Person: Jie Zheng, Chris Stoeckert, Alan Ruttenberg
comment: The 'term requester' can credit the person, organization or project who request the ontology term.

imported from
type: AnnotationProperty
type: ObjectProperty
type: NamedIndividual
imported from: brucellosis.owl
definition source: GROUP:OBI:<http://purl.obolibrary.org/obo/obi>
definition: For external terms/classes, the ontology from which the term was imported
label: 引自
definition editor: PERSON:Melanie Courtot
editor preferred label: imported from
has curation status: IAO_0000125
editor preferred label: 引自 @zh
definition: 外部术语/类，术语引入的本体 @zh
definition editor: PERSON:Alan Ruttenberg

expand expression to
type: AnnotationProperty
editor preferred label: expand expression to
example of usage: ObjectProperty: RO_0002104 Label: has plasma membrane part Annotations: IAO_0000424 "http://purl.obolibrary.org/obo/BFO_0000051 some (http://purl.org/obo/owl/GO#GO_0005886 and http://purl.obolibrary.org/obo/BFO_0000051 some ?Y)"
definition: A macro expansion tag applied to an object property (or possibly a data property) which can be used by a macro-expansion engine to generate more complex expressions from simpler ones
definition editor: Chris Mungall

OBO foundry unique label
type: AnnotationProperty
editor preferred label: OBO foundry unique label
has curation status: IAO_0000125
definition: An alternative name for a class or property which is unique across the OBO Foundry.
editor note: The intended usage of that property is as follow: OBO foundry unique labels are automatically generated based on regular expressions provided by each ontology, so that SO could specify unique label = 'sequence ' + [label], etc. , MA could specify 'mouse + [label]' etc. Upon importing terms, ontology developers can choose to use the 'OBO foundry unique label' for an imported term or not. The same applies to tools .
definition editor: PERSON:Alan Ruttenberg
definition editor: PERSON:Bjoern Peters
definition editor: PERSON:Chris Mungall
definition editor: PERSON:Melanie Courtot
definition source: GROUP:OBO Foundry <http://obofoundry.org/>

elucidation
type: AnnotationProperty
editor preferred label: elucidation
editor preferred label: 说明 @zh
definition editor: person:Alan Ruttenberg
definition source: Person:Barry Smith
elucidation: Primitive terms in a highest-level ontology such as BFO are terms which are so basic to our understanding of reality that there is no way of defining them in a non-circular fashion. For these, therefore, we can provide only elucidations, supplemented by examples and by axioms
elucidation: 在最高级别的本体中的原始术语如BFO是对我们理解现实最基本，以至于无法以非循环的方式来定义它们的术语。对于这些，因此，我们只能提供说明，通过例子和公理进行补充 @zh
label: 说明

has associated axiom(nl)
type: AnnotationProperty
editor preferred label: has associated axiom(nl)
editor preferred label: 具有相关联的公理（nl） @zh
definition editor: Person:Alan Ruttenberg
definition source: Person:Alan Ruttenberg
elucidation: An axiom associated with a term expressed using natural language
elucidation: 与一个使用自然语言表达的术语相关的公理 @zh
label: 具有相关联的公理（nl）

has associated axiom(fol)
type: AnnotationProperty
editor preferred label: has associated axiom(fol)
editor preferred label: 具有相关联的公理（fol） @zh
definition editor: Person:Alan Ruttenberg
definition source: Person:Alan Ruttenberg
elucidation: An axiom expressed in first order logic using CLIF syntax
elucidation: 使用CLIF语法在第一逻辑进行表达的公理 @zh
label: 具有相关联的公理（fol）

axiom id
type: AnnotationProperty
editor preferred label: has axiom id
definition editor: Person:Alan Ruttenberg
definition source: Person:Alan Ruttenberg
elucidation: A URI that is intended to be unique label for an axiom used for tracking change to the ontology. For an axiom expressed in different languages, each expression is given the same URI
label: has axiom label

term replaced by
type: AnnotationProperty
editor preferred label: term replaced by
has curation status: IAO_0000125
definition: Add as annotation triples in the granting ontology
definition: Use on obsolete terms, relating the term to another term that can be used as a substitute
definition editor: Person:Alan Ruttenberg
definition source: Person:Alan Ruttenberg

has literature mining keywords
type: AnnotationProperty
definition: an annotation property that lists keyword(s) useful for literature tagging and retrieval of sentences containing the type (or kind) of entity (e.g., interaction) as shown by the ontology term label and definition.
definition editor: Yongqun He

has_specified_input
type: AnnotationProperty
type: ObjectProperty
equivalent property:
  inverse of: is_specified_input_of
sub property of: has participant
inverse of: is_specified_input_of
domain: planned process
imported from: obi.owl
definition editor: PERSON: Alan Ruttenberg
example of usage: see is_input_of example_of_usage
editor note: 8/17/09: specified inputs of one process are not necessarily specified inputs of a larger process that it is part of. This is in contrast to how 'has participant' works.
definition editor: PERSON: Melanie Coutot
definition editor: PERSON: Larry Hunter
definition: A relation between a planned process and a continuant participating in that process that is not created during the process. The presence of the continuant during the process is explicitly specified in the plan specification which the process realizes the concretization of.
has curation status: IAO_0000122
editor preferred label: has_specified_input
definition editor: PERSON: Bjoern Peters

has_specified_output
type: AnnotationProperty
type: ObjectProperty
equivalent property:
  inverse of: is_specified_output_of
sub property of: has participant
inverse of: is_specified_output_of
domain: planned process
editor preferred label: has_specified_output
definition editor: PERSON: Melanie Courtot
definition editor: PERSON: Bjoern Peters
definition: A relation between a planned process and a continuant participating in that process. The presence of the continuant at the end of the process is explicitly specified in the objective specification which the process realizes the concretization of.
imported from: obi.owl
definition editor: PERSON: Alan Ruttenberg
has curation status: IAO_0000122
definition editor: PERSON: Larry Hunter

symbol from nomenclature authority
type: AnnotationProperty
definition: the symbol assigned by the nomenclature authority
definition editor: Oliver He, Yue Liu

full name from nomenclature authority
type: AnnotationProperty
definition: the full name assigned by the nomenclature authority
definition editor: Oliver He, Yue Liu

NCBI GeneID
type: AnnotationProperty
definition: A GeneID in the NCBI Gene database
definition editor: Oliver He, Yue Liu

NCBI LocusTag
type: AnnotationProperty
definition: the NCBI LocusTag name of a gene
definition editor: Oliver He, Yue Liu

gene map location
type: AnnotationProperty
definition: the map location of a gene
definition editor: Oliver He, Yue Liu

modification date
type: AnnotationProperty
definition: a date of content modification
definition editor: Oliver He, Yue Liu

organism NCBITaxon ID
type: AnnotationProperty
definition: The NCBITaxon ontology ID of an organism.
definition editor: Oliver He, Yue Liu

chromosome ID of gene
type: AnnotationProperty
definition: A chromosome ID where a gene is located.
definition editor: Oliver He

type of gene
type: AnnotationProperty
definition: an annotation property that specifies the type of a gene
definition editor: Oliver He

nomenclature status
type: AnnotationProperty
definition: an annotation property that specifies a nomenclature status
definition editor: Oliver He

has GO association
type: AnnotationProperty
definition: an annotation property that shows the GO information associated with a specific gene.
definition editor: Yongqun He
comment: YH: use the convention: GO_ID (EC: xx; Qualifier: xx; PMID: xxxxx;) where GO_ID is a GO ID, EC is the Evidence Code, Qualifier is a specific association type, and PMID is a PubMed ID of a paper that supports the gene-GO association.
domain: gene

has PubMed association
type: AnnotationProperty
definition: An annotation property that represents a gene's association with PubMed publication(s).
definition editor: Yongqun He
comment: YH: use the format: PMID: pmid1, pmid2, ... where pmid1 and pmid2 are specfic PubMed IDs (PMIDs).

has Victors annotation
type: AnnotationProperty
definition: The annotation of the gene as a virulence factor stored in the Victors database (http://www.phidias.us/victors/).
definition editor: Edison Ong; Yongqun He; Yu Lin

has Victors id
type: AnnotationProperty
definition: The idenfier of the entity stored in the Victors database (http://www.phidias.us/victors/).
definition editor: Edison Ong; Yongqun He; Yu Lin

has_role
type: AnnotationProperty
type: ObjectProperty
equivalent property:
  inverse of: role of
sub property of: bearer of
domain: independent continuant
range: role
example of usage: this person has role this investigator role (more colloquially: this person has this role of investigator)
数据库_交叉_引用: RO:0000087
is transitive: false
editor note: A bearer can have many roles, and its roles can exist for different periods of time, but none of its roles can exist when the bearer does not exist. A role need not be realized at all the times that the role exists.
definition: a relation between an independent continuant (the bearer) and a role, in which the role specifically depends on the bearer for its existence
label: has role
id: has_role
有_obo_命名空间: protein
shorthand: has_role
is cyclic: false
有_obo_命名空间: chebi_ontology
alternative term: has_role

temporal interpretation
type: AnnotationProperty
definition: An assertion that holds between an OWL Object Property and a temporal interpretation that elucidates how OWL Class Axioms that use this property are to be interpreted in a temporal context.
sub property of: logical macro assertion on an object property

dubious_for_taxon
type: AnnotationProperty
definition: S dubious_for_taxon T if it is probably the case that no instances of S can be found in any instance of T.
definition editor: https://orcid.org/0000-0002-6601-2165
definition source: http://www.ncbi.nlm.nih.gov/pubmed/22293552
数据库_交叉_引用: RO:0002174
有_obo_命名空间: uberon
id: dubious_for_taxon
is class level: true
is metadata tag: true
shorthand: dubious_for_taxon
comment: This relation lacks a strong logical interpretation, but can be used in place of never_in_taxon where it is desirable to state that the definition of the class is too strict for the taxon under consideration, but placing a never_in_taxon link would result in a chain of inconsistencies that will take ongoing coordinated effort to resolve. Example: metencephalon in teleost
comment: this relation lacks a strong logical interpretation, but can be used in place of never_in_taxon where it is desirable to state that the definition of the class is too strict for the taxon under consideration, but placing a never_in_taxon link would result in a chain of inconsistencies that will take time to resolve. Example: metencephalon in teleost
label: dubious for taxon

Axiom
annotated source: dubious_for_taxon
annotated property: definition
annotated target: S dubious_for_taxon T if it is probably the case that no instances of S can be found in any instance of T.
数据库_交叉_引用: https://orcid.org/0000-0002-6601-2165

present_in_taxon
type: AnnotationProperty
definition: S present_in_taxon T if some instance of T has some S. This does not means that all instances of T have an S - it may only be certain life stages or sexes that have S
definition editor: https://orcid.org/0000-0002-6601-2165
definition source: http://www.ncbi.nlm.nih.gov/pubmed/22293552
数据库_交叉_引用: RO:0002175
has_exact_synonym: applicable for taxon
有_obo_命名空间: uberon
id: present_in_taxon
is class level: true
is metadata tag: true
shorthand: present_in_taxon
label: present in taxon

Axiom
annotated source: present_in_taxon
annotated property: definition
annotated target: S present_in_taxon T if some instance of T has some S. This does not means that all instances of T have an S - it may only be certain life stages or sexes that have S
数据库_交叉_引用: https://orcid.org/0000-0002-6601-2165

defined by inverse
type: AnnotationProperty

logical macro assertion on an object property
type: AnnotationProperty
definition: Used to annotate object properties to describe a logical meta-property or characteristic of the object property.

logical macro assertion on an annotation property
type: AnnotationProperty

is direct form of
type: AnnotationProperty
definition: relation p is the direct form of relation q iff p is a subPropertyOf q, p does not have the Transitive characteristic, q does have the Transitive characteristic, and for all x, y: x q y -> exists z1, z2, ..., zn such that x p z1 ... z2n y
editor note: The general property hierarchy is: "directly P" SubPropertyOf "P" Transitive(P) Where we have an annotation assertion "directly P" "is direct form of" "P"
logical macro assertion on an annotation property: If we have the annotation P is-direct-form-of Q, and we have inverses P' and Q', then it follows that P' is-direct-form-of Q'
creator: Chris Mungall

is a defining property chain axiom
type: AnnotationProperty
definition: If R <- P o Q is a defining property chain axiom, then it also holds that R -> P o Q. Note that this cannot be expressed directly in OWL

is a defining property chain axiom where second argument is reflexive
type: AnnotationProperty
definition: If R <- P o Q is a defining property chain axiom, then (1) R -> P o Q holds and (2) Q is either reflexive or locally reflexive. A corollary of this is that P SubPropertyOf R.

is positive form of
type: AnnotationProperty
created_by: cjm
creation_date: 2018-03-14T00:03:16Z

is negative form of
type: AnnotationProperty
created_by: cjm
creation_date: 2018-03-14T00:03:24Z

is homeomorphic for
type: AnnotationProperty
example of usage: part-of is homeomorphic for independent continuants.
definition: R is homemorphic for C iff (1) there exists some x,y such that x R y, and x and y instantiate C and (2) for all x, if x is an instance of C, and there exists some y some such that x R y, then it follows that y is an instance of C.
created_by: cjm
creation_date: 2018-10-21T19:46:34Z
comment: R homeomorphic-for C expands to: C SubClassOf R only C. Additionally, for any class D that is disjoint with C, we can also expand to C DisjointWith R some D, D DisjointWith R some C.

external_definition
type: AnnotationProperty
definition: An alternate textual definition for a class taken unmodified from an external source. This definition may have been used to derive a generalized definition for the new class.
数据库_交叉_引用: UBPROP:0000001
有_obo_命名空间: uberon
id: external_definition
is metadata tag: true
shorthand: external_definition
comment: This annotation property may be replaced with an annotation property from an external ontology such as IAO

Axiom
annotated source: external_definition
annotated property: definition
annotated target: An alternate textual definition for a class taken unmodified from an external source. This definition may have been used to derive a generalized definition for the new class.
数据库_交叉_引用: https://orcid.org/0000-0002-6601-2165

axiom_lost_from_external_ontology
type: AnnotationProperty
definition: A textual description of an axiom loss in this ontology compared to an external ontology.
数据库_交叉_引用: UBPROP:0000002
有_obo_命名空间: uberon
id: axiom_lost_from_external_ontology
is metadata tag: true
shorthand: axiom_lost_from_external_ontology
comment: This annotation property may be replaced with an annotation property from an external ontology such as IAO

Axiom
annotated source: axiom_lost_from_external_ontology
annotated property: definition
annotated target: A textual description of an axiom loss in this ontology compared to an external ontology.
数据库_交叉_引用: https://orcid.org/0000-0002-6601-2165

homology_notes
type: AnnotationProperty
definition: Notes on the homology status of this class.
数据库_交叉_引用: UBPROP:0000003
有_obo_命名空间: uberon
id: homology_notes
is metadata tag: true
shorthand: homology_notes
comment: This annotation property may be replaced with an annotation property from an external ontology such as IAO

Axiom
annotated source: homology_notes
annotated property: definition
annotated target: Notes on the homology status of this class.
数据库_交叉_引用: https://orcid.org/0000-0002-6601-2165

external_comment
type: AnnotationProperty
definition: An alternate comment for a class taken unmodified from an external source. Note that obo format only allows a single comment for a class, and does not provide a structured means of adding provenance info.
数据库_交叉_引用: UBPROP:0000005
有_obo_命名空间: uberon
id: external_comment
is metadata tag: true
shorthand: external_comment
comment: This annotation property may be replaced with an annotation property from an external ontology such as IAO

Axiom
annotated source: external_comment
annotated property: definition
annotated target: An alternate comment for a class taken unmodified from an external source. Note that obo format only allows a single comment for a class, and does not provide a structured means of adding provenance info.
数据库_交叉_引用: https://orcid.org/0000-0002-6601-2165

implements_design_pattern
type: AnnotationProperty
数据库_交叉_引用: UBPROP:0000006
有_obo_命名空间: uberon
id: implements_design_pattern
is metadata tag: true
shorthand: implements_design_pattern

has_relational_adjective
type: AnnotationProperty
curator note: Used to connect a class to an adjectival form of its label. For example, a class with label 'intestine' may have a relational adjective 'intestinal'.
数据库_交叉_引用: UBPROP:0000007
有_obo_命名空间: uberon
id: has_relational_adjective
is metadata tag: true
shorthand: has_relational_adjective

taxon_notes
type: AnnotationProperty
definition: Notes on the how instances of this class vary across species.
数据库_交叉_引用: UBPROP:0000008
有_obo_命名空间: uberon
id: taxon_notes
is metadata tag: true
shorthand: taxon_notes

Axiom
annotated source: taxon_notes
annotated property: definition
annotated target: Notes on the how instances of this class vary across species.
数据库_交叉_引用: https://orcid.org/0000-0002-6601-2165

function_notes
type: AnnotationProperty
definition: Notes on the evolved function of instances of this class.
editor note: This annotation property may be replaced with an annotation property from an external ontology such as IAO
数据库_交叉_引用: UBPROP:0000009
有_obo_命名空间: uberon
id: function_notes
is metadata tag: true
shorthand: function_notes

Axiom
annotated source: function_notes
annotated property: definition
annotated target: Notes on the evolved function of instances of this class.
数据库_交叉_引用: https://orcid.org/0000-0002-6601-2165

structure_notes
type: AnnotationProperty
definition: Notes on the structure, composition or histology of instances of this class.
editor note: This annotation property may be replaced with an annotation property from an external ontology such as IAO
数据库_交叉_引用: UBPROP:0000010
有_obo_命名空间: uberon
id: structure_notes
is metadata tag: true
shorthand: structure_notes

Axiom
annotated source: structure_notes
annotated property: definition
annotated target: Notes on the structure, composition or histology of instances of this class.
数据库_交叉_引用: https://orcid.org/0000-0002-6601-2165

development_notes
type: AnnotationProperty
definition: Notes on the ontogenic development of instances of this class.
editor note: This annotation property may be replaced with an annotation property from an external ontology such as IAO
数据库_交叉_引用: UBPROP:0000011
有_obo_命名空间: uberon
id: development_notes
is metadata tag: true
shorthand: development_notes

Axiom
annotated source: development_notes
annotated property: definition
annotated target: Notes on the ontogenic development of instances of this class.
数据库_交叉_引用: https://orcid.org/0000-0002-6601-2165

external_ontology_notes
type: AnnotationProperty
definition: Notes on how similar or equivalent classes are represented in other ontologies.
editor note: This annotation property may be replaced with an annotation property from an external ontology such as IAO
数据库_交叉_引用: UBPROP:0000012
有_obo_命名空间: uberon
id: external_ontology_notes
is metadata tag: true
shorthand: external_ontology_notes

Axiom
annotated source: external_ontology_notes
annotated property: definition
annotated target: Notes on how similar or equivalent classes are represented in other ontologies.
数据库_交叉_引用: https://orcid.org/0000-0002-6601-2165

terminology_notes
type: AnnotationProperty
definition: Notes on how lexical conventions regarding this class, in particular any issues that may arise due to homonyny or synonymy.
editor note: This annotation property may be replaced with an annotation property from an external ontology such as IAO
数据库_交叉_引用: UBPROP:0000013
有_obo_命名空间: uberon
id: terminology_notes
is metadata tag: true
shorthand: terminology_notes

Axiom
annotated source: terminology_notes
annotated property: definition
annotated target: Notes on how lexical conventions regarding this class, in particular any issues that may arise due to homonyny or synonymy.
数据库_交叉_引用: https://orcid.org/0000-0002-6601-2165

is count of
type: AnnotationProperty
数据库_交叉_引用: UBPROP:0000100
有_obo_命名空间: uberon
id: is_count_of
is metadata tag: true
shorthand: is_count_of

preceding element is
type: AnnotationProperty
definition: A property used in conjunction with repeated_element_number to indicate an axis and directionality along that axis. If P preceding_element_is R, and P is_count_of S, and X P N, and X' P N+1, then it follows that every X R some X', and the class expression [S and R some X' and inv(R) some X] is empty (i.e. X is followed by X', with no intermediates)
数据库_交叉_引用: UBPROP:0000101
有_obo_命名空间: uberon
id: preceding_element_is
is metadata tag: true
shorthand: preceding_element_is

Axiom
annotated source: preceding element is
annotated property: definition
annotated target: A property used in conjunction with repeated_element_number to indicate an axis and directionality along that axis. If P preceding_element_is R, and P is_count_of S, and X P N, and X' P N+1, then it follows that every X R some X', and the class expression [S and R some X' and inv(R) some X] is empty (i.e. X is followed by X', with no intermediates)
数据库_交叉_引用: https://orcid.org/0000-0002-6601-2165

pharyngeal arch number
type: AnnotationProperty
definition: x pharyngeal_arch_number N if and only if (i) x is a pharyngeal arch, and (ii) x is ancestrally pharyngeal arch number N in a series of pharyngeal arches repeated along a antero-posterior axis, with arch_number 1 being the mandibular arch.
terminology_notes: gill arch N = PA N-2. the term branchial_arch is ambiguous.
is count of: UBERON_0002539
preceding element is: anterior_to
数据库_交叉_引用: UBPROP:0000103
有_obo_命名空间: uberon
id: pharyngeal_arch_number
is metadata tag: true
shorthand: pharyngeal_arch_number

Axiom
annotated source: pharyngeal arch number
annotated property: definition
annotated target: x pharyngeal_arch_number N if and only if (i) x is a pharyngeal arch, and (ii) x is ancestrally pharyngeal arch number N in a series of pharyngeal arches repeated along a antero-posterior axis, with arch_number 1 being the mandibular arch.
数据库_交叉_引用: https://orcid.org/0000-0002-6601-2165

fma_set_term
type: AnnotationProperty
external_ontology_notes: FMA has terms like 'set of X'. In general we do not include set-of terms in uberon, but provide a mapping between the singular form and the FMA set term
数据库_交叉_引用: UBPROP:0000202
有_obo_命名空间: uberon
id: fma_set_term
is metadata tag: true
shorthand: fma_set_term

Axiom
annotated source: fma_set_term
annotated property: external_ontology_notes
annotated target: FMA has terms like 'set of X'. In general we do not include set-of terms in uberon, but provide a mapping between the singular form and the FMA set term
external ontology: FMA

IUPAC NAME
type: AnnotationProperty

3 STAR
type: AnnotationProperty
comment: Manually annotated by ChEBI Team

DO AGR slim
type: AnnotationProperty
comment: DO_AGR_slim

DO FlyBase slim
type: AnnotationProperty
comment: DO_FlyBase_slim

DO MGI slim
type: AnnotationProperty
comment: DO_MGI_slim

DO cancer slim
type: AnnotationProperty
comment: DO_cancer_slim

DO rare slim
type: AnnotationProperty
comment: DO_rare_slim

NCIthesaurus
type: AnnotationProperty
comment: NCIthesaurus

TopNodes DOcancerslim
type: AnnotationProperty
comment: TopNodes_DOcancerslim

gocheck do not annotate
type: AnnotationProperty
comment: Term not to be used for direct annotation

gocheck do not manually annotate
type: AnnotationProperty
comment: Term not to be used for direct manual annotation

goslim agr
type: AnnotationProperty
comment: AGR slim

goslim aspergillus
type: AnnotationProperty
comment: Aspergillus GO slim

goslim candida
type: AnnotationProperty
comment: Candida GO slim

goslim chembl
type: AnnotationProperty
comment: ChEMBL protein targets summary

goslim flybase ribbon
type: AnnotationProperty
comment: FlyBase Drosophila GO ribbon slim

goslim generic
type: AnnotationProperty
comment: Generic GO slim

goslim metagenomics
type: AnnotationProperty
comment: Metagenomics GO slim

goslim mouse
type: AnnotationProperty
comment: Mouse GO slim

goslim pir
type: AnnotationProperty
comment: PIR GO slim

goslim plant
type: AnnotationProperty
comment: Plant GO slim

goslim pombe
type: AnnotationProperty
comment: Fission yeast GO slim

goslim yeast
type: AnnotationProperty
comment: Yeast GO slim

has_rank
type: AnnotationProperty
definition: A metadata relation between a class and its taxonomic rank (eg species, family)
有_obo_命名空间: ncbi_taxonomy

Label appended to organism-specific terms in place of scientific name
type: AnnotationProperty
has_scope: has_exact_synonym

Unique short label for PRO terms for display purposes; based on orthology
type: AnnotationProperty
has_scope: has_exact_synonym

eco subset
type: AnnotationProperty

abbreviation
type: AnnotationProperty

A historic synonym, no longer encouraged
type: AnnotationProperty

dubious or contested synonym
type: AnnotationProperty

preferred term when talking about an instance of this class in Homo sapiens
type: AnnotationProperty

indicates that a synonym is used in an inconsistent or confusing way, typically between species
type: AnnotationProperty

latin term
type: AnnotationProperty

expert consultation and attribution required
type: AnnotationProperty

plural term
type: AnnotationProperty

taxonomic disambiguation
type: AnnotationProperty

cumbo
type: AnnotationProperty
comment: CUMBO

developmental classification
type: AnnotationProperty
comment: developmental_classification

early development
type: AnnotationProperty
comment: A class that represents an early developmental structure, like a blastocyst. This part of the ontology is undergoing review to remove inappropriate grouping classes.

efo slim
type: AnnotationProperty
comment: EFO slim

emapa ehdaa2
type: AnnotationProperty
comment: derived from the union of EHDAA2 and EMAPA - still to be checked

functional classification
type: AnnotationProperty
comment: functional_classification

grouping class
type: AnnotationProperty
comment: Subset consisting of classes creating for grouping purposes

homology grouping
type: AnnotationProperty
comment: A grouping class that depends on an assumption of homology between subclasses

inconsistent with fma
type: AnnotationProperty
comment: classes that have some inconsistency with FMA

major organ
type: AnnotationProperty
comment: somewhat fuzzy grouping for analysis purposes, currently composed of something like: liver, heart, skeletal, kidney, bladder, brain, skin, mouth, esophagus, stomach, small intestine, large intestines, trachea nose, lungs, brain, spinal cord, peripheral nerves, kidneys, ureters, bladder, urethra, gonads

non informative
type: AnnotationProperty
comment: abstract class brought in to group ontology classes but not informative

organ slim
type: AnnotationProperty
comment: organs, excluding individual muscles and skeletal elements

pheno slim
type: AnnotationProperty
comment: Phenotype slim

phenotype rcn
type: AnnotationProperty
comment: A subset specifically created for the 2012 Phenotype RCN meeting. Includes some human-specific terms that may eventually be removed when they are adequately represented with part of relationships in FMA

uberon slim
type: AnnotationProperty
comment: Uberon slim - subset that excludes obscure terms and deep compositional terms

upper level
type: AnnotationProperty
comment: abstract upper-level terms not directly useful for analysis

vertebrate core
type: AnnotationProperty
comment: core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO

Contributor
type: AnnotationProperty
description: Examples of a Contributor include a person, an organisation, or a service. Typically, the name of a Contributor should be used to indicate the entity.
有_obo_命名空间: uberon
id: dc-contributor
is metadata tag: true
shorthand: dc-contributor
comment: An entity responsible for making contributions to the content of the resource.
label: contributor

Creator
type: AnnotationProperty
description: Examples of a Creator include a person, an organisation, or a service. Typically, the name of a Creator should be used to indicate the entity.
有_obo_命名空间: uberon
id: dc-creator
is metadata tag: true
shorthand: dc-creator
comment: An entity primarily responsible for making the content of the resource.
label: creator

Date
type: AnnotationProperty
description: Typically, Date will be associated with the creation or availability of the resource. Recommended best practice for encoding the date value is defined in a profile of ISO 8601 [W3CDTF] and follows the YYYY-MM-DD format.
comment: A date associated with an event in the life cycle of the resource.
label: dc:date

Description
type: AnnotationProperty
description: Description may include but is not limited to: an abstract, table of contents, reference to a graphical representation of content or a free-text account of the content.
有_obo_命名空间: uberon
id: dc-description
is metadata tag: true
shorthand: dc-description
comment: An account of the content of the resource.
label: description

Format
type: AnnotationProperty
description: Typically, Format may include the media-type or dimensions of the resource. Format may be used to determine the software, hardware or other equipment needed to display or operate the resource. Examples of dimensions include size and duration. Recommended best practice is to select a value from a controlled vocabulary (for example, the list of Internet Media Types [MIME] defining computer media formats).
comment: The physical or digital manifestation of the resource.

Source
type: AnnotationProperty
description: The present resource may be derived from the Source resource in whole or in part. Recommended best practice is to reference the resource by means of a string or number conforming to a formal identification system.
有_obo_命名空间: uberon
id: dc-source
is metadata tag: true
shorthand: dc-source
comment: A reference to a resource from which the present resource is derived.
label: derived from resource

Subject and Keywords
type: AnnotationProperty
description: Typically, a Subject will be expressed as keywords, key phrases or classification codes that describe a topic of the resource. Recommended best practice is to select a value from a controlled vocabulary or formal classification scheme.
comment: The topic of the content of the resource.

Title
type: AnnotationProperty
description: Typically, a Title will be a name by which the resource is formally known.
有_obo_命名空间: uberon
id: dc-title
is metadata tag: true
shorthand: dc-title
comment: A name given to the resource.
label: title

Resource Type
type: AnnotationProperty
description: Type includes terms describing general categories, functions, genres, or aggregation levels for content. Recommended best practice is to select a value from a controlled vocabulary (for example, the DCMI Type Vocabulary [DCMITYPE]). To describe the physical or digital manifestation of the resource, use the Format element.
comment: The nature or genre of the content of the resource.

license
type: AnnotationProperty
definition editor: Mark Miller
date: 2018-05-11T13:47:29Z

created_by
type: AnnotationProperty

creation_date
type: AnnotationProperty

has_alternative_id
type: AnnotationProperty

has_broad_synonym
type: AnnotationProperty

数据库_交叉_引用
type: AnnotationProperty
label: database_cross_reference

has_exact_synonym
type: AnnotationProperty

has_narrow_synonym
type: AnnotationProperty

有_obo_命名空间
type: AnnotationProperty
comment: disease_ontology
label: has_obo_namespace

has_related_synonym
type: AnnotationProperty

has_scope
type: AnnotationProperty

has_synonym_type
type: AnnotationProperty

id
type: AnnotationProperty

in_subset
type: AnnotationProperty

shorthand
type: AnnotationProperty

isDefinedBy
type: AnnotationProperty
OBO foundry unique label: is defined by

Axiom
annotated source: isDefinedBy
annotated property: OBO foundry unique label
annotated target: is defined by
comment: This is an experimental annotation

label
type: AnnotationProperty
editor preferred label: label
label: 标签

homepage
type: AnnotationProperty
有_obo_命名空间: uberon
id: foaf-homepage
is metadata tag: true
shorthand: foaf-homepage

page
type: AnnotationProperty
有_obo_命名空间: uberon
id: foaf-page
is metadata tag: true
shorthand: foaf-page

part of
type: ObjectProperty
equivalent property:
  inverse of: has_part
sub property of: overlaps
inverse of: has_part
type: TransitiveProperty
editor preferred label: is part of
example of usage: my brain is part of my body (continuant parthood, two material entities)
example of usage: my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)
example of usage: this day is part of this year (occurrent parthood)
definition: a core relation that holds between a part and its whole
editor note: Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other.
editor note: Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime
editor note: Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.) A continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'.
alternative term: part_of
temporal interpretation: RO_0001901
is homeomorphic for: continuant
is homeomorphic for: occurrent
is homeomorphic for: independent continuant
is homeomorphic for: realizable entity
is homeomorphic for: quality
is homeomorphic for: specifically dependent continuant
is homeomorphic for: generically dependent continuant
数据库_交叉_引用: BFO:0000050
有_obo_命名空间: external
有_obo_命名空间: protein
有_obo_命名空间: uberon
id: part_of
shorthand: part_of
label: part_of

has_part
type: ObjectProperty
equivalent property:
  inverse of: part of
sub property of: overlaps
type: TransitiveProperty
editor preferred label: has part
example of usage: my body has part my brain (continuant parthood, two material entities)
example of usage: my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)
example of usage: this year has part this day (occurrent parthood)
definition: a core relation that holds between a whole and its part
editor note: Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part.
editor note: Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime
editor note: Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.) A continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'.
alternative term: has_part
imported from: ro.owl
temporal interpretation: RO_0001901
数据库_交叉_引用: BFO:0000051
有_obo_命名空间: chebi_ontology
有_obo_命名空间: external
有_obo_命名空间: protein
有_obo_命名空间: uberon
id: has_part
is cyclic: false
shorthand: has_part
label: has part

inheres in at all times
type: ObjectProperty
sub property of: specifically depends on at all times
domain: specifically dependent continuant
range: Class
  intersection of: independent continuant
  intersection of: Class
    complement of: spatial region
BFO OWL specification label: inheres-in_at
BFO CLIF specification label: inheresInAt
definition: b inheres_in c at t =Def. b is a dependent continuant & c is an independent continuant that is not a spatial region & b s-depends_on c at t. (axiom label in BFO2 Reference: [051-002])
editor note: Alan Ruttenberg: This is a binary version of a ternary time-indexed, instance-level, relation. The BFO reading of the binary relation 'inheres in at all times@en' is: forall(t) exists_at(x,t) -> exists_at(y,t) and 'inheres in@en(x,y,t)'.
editor note: BFO 2 Reference: Inherence is a subrelation of s-depends_on which holds between a dependent continuant and an independent continuant that is not a spatial region. Since dependent continuants cannot migrate from one independent continuant bearer to another, it follows that if b s-depends_on independent continuant c at some time, then b s-depends_on c at all times at which a exists. Inherence is in this sense redundantly time-indexed.For example, consider the particular instance of openness inhering in my mouth at t as I prepare to take a bite out of a donut, followed by a closedness at t+1 when I bite the donut and start chewing. The openness instance is then shortlived, and to say that it s-depends_on my mouth at all times at which this openness exists, means: at all times during this short life. Every time you make a fist, you make a new (instance of the universal) fist. (Every time your hand has the fist-shaped quality, there is created a new instance of the universal fist-shaped quality.)
editor note: BFO2 Reference: independent continuant that is not a spatial region
editor note: BFO2 Reference: specifically dependent continuant
has associated axiom(fol): (iff (inheresInAt a b t) (and (DependentContinuant a) (IndependentContinuant b) (not (SpatialRegion b)) (specificallyDependsOnAt a b t))) // axiom label in BFO2 CLIF: [051-002]

Axiom
annotated source: inheres in at all times
annotated property: definition
annotated target: b inheres_in c at t =Def. b is a dependent continuant & c is an independent continuant that is not a spatial region & b s-depends_on c at t. (axiom label in BFO2 Reference: [051-002])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/051-002

Axiom
annotated source: inheres in at all times
annotated property: has associated axiom(fol)
annotated target: (iff (inheresInAt a b t) (and (DependentContinuant a) (IndependentContinuant b) (not (SpatialRegion b)) (specificallyDependsOnAt a b t))) // axiom label in BFO2 CLIF: [051-002]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/051-002

bearer of at some time
type: ObjectProperty
sub property of: has specific dependent at some time
domain: Class
  intersection of: independent continuant
  intersection of: Class
    complement of: spatial region
range: specifically dependent continuant
BFO OWL specification label: bearer-of_st
BFO CLIF specification label: bearerOfAt
definition: b bearer_of c at t =Def. c s-depends_on b at t & b is an independent continuant that is not a spatial region. (axiom label in BFO2 Reference: [053-004])
editor note: Alan Ruttenberg: This is a binary version of a ternary time-indexed, instance level, relation. The BFO reading of the binary relation 'bearer of at some time@en' is: exists t, exists_at(x,t) & exists_at(y,t) & 'bearer of@en'(x,y,t)
editor note: BFO2 Reference: independent continuant that is not a spatial region
editor note: BFO2 Reference: specifically dependent continuant
has associated axiom(fol): (iff (bearerOfAt a b t) (and (specificallyDependsOnAt b a t) (IndependentContinuant a) (not (SpatialRegion a)) (existsAt b t))) // axiom label in BFO2 CLIF: [053-004]

Axiom
annotated source: bearer of at some time
annotated property: definition
annotated target: b bearer_of c at t =Def. c s-depends_on b at t & b is an independent continuant that is not a spatial region. (axiom label in BFO2 Reference: [053-004])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/053-004

Axiom
annotated source: bearer of at some time
annotated property: has associated axiom(fol)
annotated target: (iff (bearerOfAt a b t) (and (specificallyDependsOnAt b a t) (IndependentContinuant a) (not (SpatialRegion a)) (existsAt b t))) // axiom label in BFO2 CLIF: [053-004]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/053-004

realized in
type: ObjectProperty
equivalent property:
  inverse of: realizes
inverse of: realizes
domain: realizable entity
range: process
BFO OWL specification label: realized-in
BFO CLIF specification label: realizedIn
editor preferred label: realized in
example of usage: this disease is realized in this disease course
example of usage: this fragility is realized in this shattering
example of usage: this investigator role is realized in this investigation
alternative term: is realized by
alternative term: realized_in
elucidation: [copied from inverse property 'realizes'] to say that b realizes c at t is to assert that there is some material entity d & b is a process which has participant d at t & c is a disposition or role of which d is bearer_of at t& the type instantiated by b is correlated with the type instantiated by c. (axiom label in BFO2 Reference: [059-003])
has associated axiom(nl): if a realizable entity b is realized in a process p, then p stands in the has_participant relation to the bearer of b. (axiom label in BFO2 Reference: [106-002])
has associated axiom(fol): (forall (x y z t) (if (and (RealizableEntity x) (Process y) (realizesAt y x t) (bearerOfAt z x t)) (hasParticipantAt y z t))) // axiom label in BFO2 CLIF: [106-002]
comment: Paraphrase of elucidation: a relation between a realizable entity and a process, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process

Axiom
annotated source: realized in
annotated property: has associated axiom(nl)
annotated target: if a realizable entity b is realized in a process p, then p stands in the has_participant relation to the bearer of b. (axiom label in BFO2 Reference: [106-002])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/106-002

Axiom
annotated source: realized in
annotated property: has associated axiom(fol)
annotated target: (forall (x y z t) (if (and (RealizableEntity x) (Process y) (realizesAt y x t) (bearerOfAt z x t)) (hasParticipantAt y z t))) // axiom label in BFO2 CLIF: [106-002]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/106-002

realizes
type: ObjectProperty
equivalent property:
  inverse of: realized in
domain: process
range: realizable entity
BFO OWL specification label: realizes
BFO CLIF specification label: realizes
editor preferred label: realizes
example of usage: this disease course realizes this disease
example of usage: this investigation realizes this investigator role
example of usage: this shattering realizes this fragility
elucidation: to say that b realizes c at t is to assert that there is some material entity d & b is a process which has participant d at t & c is a disposition or role of which d is bearer_of at t& the type instantiated by b is correlated with the type instantiated by c. (axiom label in BFO2 Reference: [059-003])
has associated axiom(fol): (forall (x y t) (if (realizesAt x y t) (and (Process x) (or (Disposition y) (Role y)) (exists (z) (and (MaterialEntity z) (hasParticipantAt x z t) (bearerOfAt z y t)))))) // axiom label in BFO2 CLIF: [059-003]
comment: Paraphrase of elucidation: a relation between a process and a realizable entity, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process

Axiom
annotated source: realizes
annotated property: elucidation
annotated target: to say that b realizes c at t is to assert that there is some material entity d & b is a process which has participant d at t & c is a disposition or role of which d is bearer_of at t& the type instantiated by b is correlated with the type instantiated by c. (axiom label in BFO2 Reference: [059-003])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/059-003

Axiom
annotated source: realizes
annotated property: has associated axiom(fol)
annotated target: (forall (x y t) (if (realizesAt x y t) (and (Process x) (or (Disposition y) (Role y)) (exists (z) (and (MaterialEntity z) (hasParticipantAt x z t) (bearerOfAt z y t)))))) // axiom label in BFO2 CLIF: [059-003]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/059-003

participates in
type: ObjectProperty
domain: Class
  intersection of: continuant
  intersection of: Class
    complement of: spatial region
range: process
BFO OWL specification label: participates-in_st
BFO CLIF specification label: participatesInAt
editor note: [copied from inverse property 'has participant at some time'] Alan Ruttenberg: This is a binary version of a ternary time-indexed, instance level, relation. The BFO reading of the binary relation 'has participant at some time@en' is: exists t, exists_at(x,t) & exists_at(y,t) & 'has participant@en'(x,y,t)
editor note: [copied from inverse property 'has participant at some time'] BFO 2 Reference: Spatial regions do not participate in processes.
editor note: [copied from inverse property 'has participant at some time'] BFO2 Reference: independent continuant that is not a spatial region, specifically dependent continuant, generically dependent continuant
editor note: [copied from inverse property 'has participant at some time'] BFO2 Reference: process
elucidation: [copied from inverse property 'has participant at some time'] has_participant is an instance-level relation between a process, a continuant, and a temporal region at which the continuant participates in some way in the process. (axiom label in BFO2 Reference: [086-003])
数据库_交叉_引用: BFO:0000056
有_obo_命名空间: uberon
id: participates_in
shorthand: participates_in
label: participates in at some time

preceded_by
type: ObjectProperty
sub property of: ends after
inverse of: precedes
type: TransitiveProperty
domain: occurrent
range: occurrent
property chain axiom: part of
editor preferred label: preceded by
definition: X preceded_by Y iff: end(Y) before_or_simultaneous_with start(X)
definition: x is preceded by y if and only if the time point at which y ends is before or equivalent to the time point at which x starts. Formally: x preceded by y iff ω(y) <= α(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.
editor note: An example is: translation preceded_by transcription; aging preceded_by development (not however death preceded_by aging). Where derives_from links classes of continuants, preceded_by links classes of processes. Clearly, however, these two relations are not independent of each other. Thus if cells of type C1 derive_from cells of type C, then any cell division involving an instance of C1 in a given lineage is preceded_by cellular processes involving an instance of C. The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P. Note that an assertion to the effect that P preceded_by P1 is rather weak; it tells us little about the relations between the underlying instances in virtue of which the preceded_by relation obtains. Typically we will be interested in stronger relations, for example in the relation immediately_preceded_by, or in relations which combine preceded_by with a condition to the effect that the corresponding instances of P and P1 share participants, or that their participants are connected by relations of derivation, or (as a first step along the road to a treatment of causality) that the one process in some way affects (for example, initiates or regulates) the other.
alternative term: is preceded by
alternative term: preceded_by
Source: http://www.obofoundry.org/ro/#OBO_REL:preceded_by
数据库_交叉_引用: BFO:0000062
has_exact_synonym: is preceded by
has_exact_synonym: takes place after
有_obo_命名空间: uberon
id: preceded_by
in_subset: eco subset
shorthand: preceded_by
label: preceded by

Axiom
annotated source: preceded_by
annotated property: has_exact_synonym
annotated target: is preceded by
数据库_交叉_引用: SIO:000249

Axiom
annotated source: preceded_by
annotated property: has_exact_synonym
annotated target: takes place after
数据库_交叉_引用: Allen:precedes

precedes
type: ObjectProperty
sub property of: temporal relation
type: TransitiveProperty
domain: occurrent
range: occurrent
property chain axiom: part of
editor preferred label: precedes
definition: x precedes y if and only if the time point at which x ends is before or equivalent to the time point at which y starts. Formally: x precedes y iff ω(x) <= α(y), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.
数据库_交叉_引用: BFO:0000063
有_obo_命名空间: uberon
id: precedes
in_subset: eco subset
shorthand: precedes

occurs in
type: ObjectProperty
equivalent property:
  inverse of: contains process
inverse of: contains process
domain: occurrent
domain: Class
  union of: process
  union of: process boundary
range: independent continuant
range: Class
  union of: site
  union of: material entity
property chain axiom: part of
BFO OWL specification label: occurs-in
BFO CLIF specification label: occursIn
editor preferred label: occurs in
definition: b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t
definition: b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t [XXX-001
alternative term: occurs_in
alternative term: unfolds in
alternative term: unfolds_in
数据库_交叉_引用: BFO:0000066
有_obo_命名空间: external
id: occurs_in
shorthand: occurs_in
comment: Paraphrase of definition: a relation between a process and an independent continuant, in which the process takes place entirely within the independent continuant

contains process
type: ObjectProperty
equivalent property:
  inverse of: occurs in
domain: Class
  union of: site
  union of: material entity
range: Class
  union of: process
  union of: process boundary
BFO OWL specification label: contains-process
BFO CLIF specification label: containsProcess
editor preferred label: site of
definition: [copied from inverse property 'occurs in'] b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t
definition: [copied from inverse property 'occurs in'] b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t [XXX-001
数据库_交叉_引用: BFO:0000067
有_obo_命名空间: uberon
id: contains_process
shorthand: contains_process
comment: Paraphrase of definition: a relation between an independent continuant and a process, in which the process takes place entirely within the independent continuant

specifically depends on at all times
type: ObjectProperty
sub property of: specifically depends on at some time
BFO OWL specification label: s-depends-on_at
BFO CLIF specification label: specificallyDependsOn
example of usage: A pain s-depends_on the organism that is experiencing the pain
example of usage: a gait s-depends_on the walking object. (All at some specific time.)
example of usage: a shape s-depends_on the shaped object
example of usage: one-sided s-dependence of a dependent continuant on an independent continuant: an instance of headache s-depends_on some head
example of usage: one-sided s-dependence of a dependent continuant on an independent continuant: an instance of temperature s-depends_on some organism
example of usage: one-sided s-dependence of a process on something: a process of cell death s-depends_on a cell
example of usage: one-sided s-dependence of a process on something: an instance of seeing (a relational process) s-depends_on some organism and on some seen entity, which may be an occurrent or a continuant
example of usage: one-sided s-dependence of one occurrent on another: a process of answering a question is dependent on a prior process of asking a question
example of usage: one-sided s-dependence of one occurrent on another: a process of obeying a command is dependent on a prior process of issuing a command
example of usage: one-sided s-dependence of one occurrent on multiple independent continuants: a relational process of hitting a ball with a cricket bat
example of usage: one-sided s-dependence of one occurrent on multiple independent continuants: a relational process of paying cash to a merchant in exchange for a bag of figs
example of usage: reciprocal s-dependence between occurrents: a process of buying and the associated process of selling
example of usage: reciprocal s-dependence between occurrents: a process of increasing the volume of a portion of gas while temperature remains constant and the associated process of decreasing the pressure exerted by the gas
example of usage: reciprocal s-dependence between occurrents: in a game of chess the process of playing with the white pieces is mutually dependent on the process of playing with the black pieces
example of usage: the one-sided dependence of an occurrent on an independent continuant: football match on the players, the ground, the ball
example of usage: the one-sided dependence of an occurrent on an independent continuant: handwave on a hand
example of usage: the three-sided reciprocal s-dependence of the hue, saturation and brightness of a color [45
example of usage: the three-sided reciprocal s-dependence of the pitch, timbre and volume of a tone [45
example of usage: the two-sided reciprocal s-dependence of the roles of husband and wife [20
editor note: Alan Ruttenberg: This is a binary version of a ternary time-indexed, instance-level, relation. The BFO reading of the binary relation 'specifically depends on at all times@en' is: forall(t) exists_at(x,t) -> exists_at(y,t) and 'specifically depends on@en(x,y,t)'.
editor note: BFO 2 Reference: An entity – for example an act of communication or a game of football – can s-depends_on more than one entity. Complex phenomena for example in the psychological and social realms (such as inferring, commanding and requesting) or in the realm of multi-organismal biological processes (such as infection and resistance), will involve multiple families of dependence relations, involving both continuants and occurrents [1, 4, 28
editor note: BFO 2 Reference: S-dependence is just one type of dependence among many; it is what, in the literature, is referred to as ‘existential dependence’ [87, 46, 65, 20
editor note: BFO 2 Reference: the relation of s-depends_on does not in every case require simultaneous existence of its relata. Note the difference between such cases and the cases of continuant universals defined historically: the act of answering depends existentially on the prior act of questioning; the human being who was baptized or who answered a question does not himself depend existentially on the prior act of baptism or answering. He would still exist even if these acts had never taken place.
editor note: BFO2 Reference: specifically dependent continuant\; process; process boundary
elucidation: To say that b s-depends_on a at t is to say that b and c do not share common parts & b is of its nature such that it cannot exist unless c exists & b is not a boundary of c and b is not a site of which c is the host [64
has associated axiom(nl): If b is s-depends_on something at some time, then b is not a material entity. (axiom label in BFO2 Reference: [052-001])
has associated axiom(nl): If b s-depends_on something at t, then there is some c, which is an independent continuant and not a spatial region, such that b s-depends_on c at t. (axiom label in BFO2 Reference: [136-001])
has associated axiom(nl): If occurrent b s-depends_on some independent continuant c at t, then b s-depends_on c at every time at which b exists. (axiom label in BFO2 Reference: [015-002])
has associated axiom(nl): an entity does not s-depend_on any of its (continuant or occurrent) parts or on anything it is part of. (axiom label in BFO2 Reference: [013-002])
has associated axiom(nl): if b s-depends_on c at t & c s-depends_on d at t then b s-depends_on d at t. (axiom label in BFO2 Reference: [054-002])
has associated axiom(fol): (forall (x y t) (if (and (Entity x) (or (continuantPartOfAt y x t) (continuantPartOfAt x y t) (occurrentPartOf x y) (occurrentPartOf y x))) (not (specificallyDependsOnAt x y t)))) // axiom label in BFO2 CLIF: [013-002]
has associated axiom(fol): (forall (x y t) (if (and (Occurrent x) (IndependentContinuant y) (specificallyDependsOnAt x y t)) (forall (t_1) (if (existsAt x t_1) (specificallyDependsOnAt x y t_1))))) // axiom label in BFO2 CLIF: [015-002]
has associated axiom(fol): (forall (x y t) (if (specificallyDependsOnAt x y t) (exists (z) (and (IndependentContinuant z) (not (SpatialRegion z)) (specificallyDependsOnAt x z t))))) // axiom label in BFO2 CLIF: [136-001]
has associated axiom(fol): (forall (x y z t) (if (and (specificallyDependsOnAt x y t) (specificallyDependsOnAt y z t)) (specificallyDependsOnAt x z t))) // axiom label in BFO2 CLIF: [054-002]
has associated axiom(fol): (forall (x) (if (exists (y t) (specificallyDependsOnAt x y t)) (not (MaterialEntity x)))) // axiom label in BFO2 CLIF: [052-001]

Axiom
annotated source: specifically depends on at all times
annotated property: has associated axiom(nl)
annotated target: If b is s-depends_on something at some time, then b is not a material entity. (axiom label in BFO2 Reference: [052-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/052-001

Axiom
annotated source: specifically depends on at all times
annotated property: has associated axiom(nl)
annotated target: If b s-depends_on something at t, then there is some c, which is an independent continuant and not a spatial region, such that b s-depends_on c at t. (axiom label in BFO2 Reference: [136-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/136-001

Axiom
annotated source: specifically depends on at all times
annotated property: has associated axiom(nl)
annotated target: If occurrent b s-depends_on some independent continuant c at t, then b s-depends_on c at every time at which b exists. (axiom label in BFO2 Reference: [015-002])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/015-002

Axiom
annotated source: specifically depends on at all times
annotated property: has associated axiom(nl)
annotated target: an entity does not s-depend_on any of its (continuant or occurrent) parts or on anything it is part of. (axiom label in BFO2 Reference: [013-002])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/013-002

Axiom
annotated source: specifically depends on at all times
annotated property: has associated axiom(nl)
annotated target: if b s-depends_on c at t & c s-depends_on d at t then b s-depends_on d at t. (axiom label in BFO2 Reference: [054-002])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/054-002

Axiom
annotated source: specifically depends on at all times
annotated property: has associated axiom(fol)
annotated target: (forall (x y t) (if (and (Entity x) (or (continuantPartOfAt y x t) (continuantPartOfAt x y t) (occurrentPartOf x y) (occurrentPartOf y x))) (not (specificallyDependsOnAt x y t)))) // axiom label in BFO2 CLIF: [013-002]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/013-002

Axiom
annotated source: specifically depends on at all times
annotated property: has associated axiom(fol)
annotated target: (forall (x y t) (if (and (Occurrent x) (IndependentContinuant y) (specificallyDependsOnAt x y t)) (forall (t_1) (if (existsAt x t_1) (specificallyDependsOnAt x y t_1))))) // axiom label in BFO2 CLIF: [015-002]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/015-002

Axiom
annotated source: specifically depends on at all times
annotated property: has associated axiom(fol)
annotated target: (forall (x y t) (if (specificallyDependsOnAt x y t) (exists (z) (and (IndependentContinuant z) (not (SpatialRegion z)) (specificallyDependsOnAt x z t))))) // axiom label in BFO2 CLIF: [136-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/136-001

Axiom
annotated source: specifically depends on at all times
annotated property: has associated axiom(fol)
annotated target: (forall (x y z t) (if (and (specificallyDependsOnAt x y t) (specificallyDependsOnAt y z t)) (specificallyDependsOnAt x z t))) // axiom label in BFO2 CLIF: [054-002]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/054-002

Axiom
annotated source: specifically depends on at all times
annotated property: has associated axiom(fol)
annotated target: (forall (x) (if (exists (y t) (specificallyDependsOnAt x y t)) (not (MaterialEntity x)))) // axiom label in BFO2 CLIF: [052-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/052-001

function of at all times
type: ObjectProperty
sub property of: inheres in at all times
domain: function
BFO OWL specification label: f-of_at
BFO CLIF specification label: functionOfAt
definition: a function_of b at t =Def. a is a function and a inheres_in b at t. (axiom label in BFO2 Reference: [067-001])
editor note: Alan Ruttenberg: This is a binary version of a ternary time-indexed, instance-level, relation. The BFO reading of the binary relation 'function of at all times@en' is: forall(t) exists_at(x,t) -> exists_at(y,t) and 'function of@en(x,y,t)'.
has associated axiom(fol): (iff (functionOf a b t) (and (Function a) (inheresInAt a b t))) // axiom label in BFO2 CLIF: [067-001]

Axiom
annotated source: function of at all times
annotated property: definition
annotated target: a function_of b at t =Def. a is a function and a inheres_in b at t. (axiom label in BFO2 Reference: [067-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/067-001

Axiom
annotated source: function of at all times
annotated property: has associated axiom(fol)
annotated target: (iff (functionOf a b t) (and (Function a) (inheresInAt a b t))) // axiom label in BFO2 CLIF: [067-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/067-001

quality of at all times
type: ObjectProperty
sub property of: inheres in at all times
domain: quality
BFO OWL specification label: q-of_at
BFO CLIF specification label: qualityOfAt
definition: b quality_of c at t = Def. b is a quality & c is an independent continuant that is not a spatial region & b s-depends_on c at t. (axiom label in BFO2 Reference: [056-002])
editor note: Alan Ruttenberg: This is a binary version of a ternary time-indexed, instance-level, relation. The BFO reading of the binary relation 'quality of at all times@en' is: forall(t) exists_at(x,t) -> exists_at(y,t) and 'quality of@en(x,y,t)'.
has associated axiom(fol): (iff (qualityOfAt a b t) (and (Quality a) (IndependentContinuant b) (not (SpatialRegion b)) (specificallyDependsOnAt a b t))) // axiom label in BFO2 CLIF: [056-002]

Axiom
annotated source: quality of at all times
annotated property: definition
annotated target: b quality_of c at t = Def. b is a quality & c is an independent continuant that is not a spatial region & b s-depends_on c at t. (axiom label in BFO2 Reference: [056-002])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/056-002

Axiom
annotated source: quality of at all times
annotated property: has associated axiom(fol)
annotated target: (iff (qualityOfAt a b t) (and (Quality a) (IndependentContinuant b) (not (SpatialRegion b)) (specificallyDependsOnAt a b t))) // axiom label in BFO2 CLIF: [056-002]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/056-002

role of at all times
type: ObjectProperty
sub property of: inheres in at all times
domain: role
BFO OWL specification label: r-of_at
BFO CLIF specification label: roleOfAt
definition: a role_of b at t =Def. a is a role and a inheres_in b at t. (axiom label in BFO2 Reference: [065-001])
editor note: Alan Ruttenberg: This is a binary version of a ternary time-indexed, instance-level, relation. The BFO reading of the binary relation 'role of at all times@en' is: forall(t) exists_at(x,t) -> exists_at(y,t) and 'role of@en(x,y,t)'.
has associated axiom(fol): (iff (roleOfAt a b t) (and (Role a) (inheresInAt a b t))) // axiom label in BFO2 CLIF: [065-001]

Axiom
annotated source: role of at all times
annotated property: definition
annotated target: a role_of b at t =Def. a is a role and a inheres_in b at t. (axiom label in BFO2 Reference: [065-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/065-001

Axiom
annotated source: role of at all times
annotated property: has associated axiom(fol)
annotated target: (iff (roleOfAt a b t) (and (Role a) (inheresInAt a b t))) // axiom label in BFO2 CLIF: [065-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/065-001

located in at all times
type: ObjectProperty
sub property of: located in at some time
type: TransitiveProperty
BFO OWL specification label: located-in_at
BFO CLIF specification label: locatedInAt
example of usage: Mary located_in Salzburg
example of usage: the Empire State Building located_in New York.
example of usage: this portion of cocaine located_in this portion of blood
example of usage: this stem cell located_in this portion of bone marrow
example of usage: your arm located_in your body
definition: b located_in c at t = Def. b and c are independent continuants, and the region at which b is located at t is a (proper or improper) continuant_part_of the region at which c is located at t. (axiom label in BFO2 Reference: [045-001])
editor note: Alan Ruttenberg: This is a binary version of a ternary time-indexed, instance-level, relation. The BFO reading of the binary relation 'located in at all times@en' is: forall(t) exists_at(x,t) -> exists_at(y,t) and 'located in@en(x,y,t)'.
editor note: BFO2 Reference: independent continuant
has associated axiom(nl): Located_in is transitive. (axiom label in BFO2 Reference: [046-001])
has associated axiom(nl): for all independent continuants b, c, and d: if b continuant_part_of c at t & c located_in d at t, then b located_in d at t. (axiom label in BFO2 Reference: [048-001])
has associated axiom(nl): for all independent continuants b, c, and d: if b located_in c at t & c continuant_part_of d at t, then b located_in d at t. (axiom label in BFO2 Reference: [049-001])
has associated axiom(fol): (forall (x y z t) (if (and (IndependentContinuant x) (IndependentContinuant y) (IndependentContinuant z) (continuantPartOfAt x y t) (locatedInAt y z t)) (locatedInAt x z t))) // axiom label in BFO2 CLIF: [048-001]
has associated axiom(fol): (forall (x y z t) (if (and (IndependentContinuant x) (IndependentContinuant y) (IndependentContinuant z) (locatedInAt x y t) (continuantPartOfAt y z t)) (locatedInAt x z t))) // axiom label in BFO2 CLIF: [049-001]
has associated axiom(fol): (forall (x y z t) (if (and (locatedInAt x y t) (locatedInAt y z t)) (locatedInAt x z t))) // axiom label in BFO2 CLIF: [046-001]
has associated axiom(fol): (iff (locatedInAt a b t) (and (IndependentContinuant a) (IndependentContinuant b) (exists (r_1 r_2) (and (occupiesSpatialRegionAt a r_1 t) (occupiesSpatialRegionAt b r_2 t) (continuantPartOfAt r_1 r_2 t))))) // axiom label in BFO2 CLIF: [045-001]

Axiom
annotated source: located in at all times
annotated property: definition
annotated target: b located_in c at t = Def. b and c are independent continuants, and the region at which b is located at t is a (proper or improper) continuant_part_of the region at which c is located at t. (axiom label in BFO2 Reference: [045-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/045-001

Axiom
annotated source: located in at all times
annotated property: has associated axiom(nl)
annotated target: Located_in is transitive. (axiom label in BFO2 Reference: [046-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/046-001

Axiom
annotated source: located in at all times
annotated property: has associated axiom(nl)
annotated target: for all independent continuants b, c, and d: if b continuant_part_of c at t & c located_in d at t, then b located_in d at t. (axiom label in BFO2 Reference: [048-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/048-001

Axiom
annotated source: located in at all times
annotated property: has associated axiom(nl)
annotated target: for all independent continuants b, c, and d: if b located_in c at t & c continuant_part_of d at t, then b located_in d at t. (axiom label in BFO2 Reference: [049-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/049-001

Axiom
annotated source: located in at all times
annotated property: has associated axiom(fol)
annotated target: (forall (x y z t) (if (and (IndependentContinuant x) (IndependentContinuant y) (IndependentContinuant z) (continuantPartOfAt x y t) (locatedInAt y z t)) (locatedInAt x z t))) // axiom label in BFO2 CLIF: [048-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/048-001

Axiom
annotated source: located in at all times
annotated property: has associated axiom(fol)
annotated target: (forall (x y z t) (if (and (IndependentContinuant x) (IndependentContinuant y) (IndependentContinuant z) (locatedInAt x y t) (continuantPartOfAt y z t)) (locatedInAt x z t))) // axiom label in BFO2 CLIF: [049-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/049-001

Axiom
annotated source: located in at all times
annotated property: has associated axiom(fol)
annotated target: (forall (x y z t) (if (and (locatedInAt x y t) (locatedInAt y z t)) (locatedInAt x z t))) // axiom label in BFO2 CLIF: [046-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/046-001

Axiom
annotated source: located in at all times
annotated property: has associated axiom(fol)
annotated target: (iff (locatedInAt a b t) (and (IndependentContinuant a) (IndependentContinuant b) (exists (r_1 r_2) (and (occupiesSpatialRegionAt a r_1 t) (occupiesSpatialRegionAt b r_2 t) (continuantPartOfAt r_1 r_2 t))))) // axiom label in BFO2 CLIF: [045-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/045-001

occupies spatial region at some time
type: ObjectProperty
inverse of: has spatial occupant at some time
domain: independent continuant
range: spatial region
BFO OWL specification label: located-at-r_st
BFO CLIF specification label: occupiesSpatialRegionAt
editor note: Alan Ruttenberg: This is a binary version of a ternary time-indexed, instance level, relation. The BFO reading of the binary relation 'occupies spatial region at some time@en' is: exists t, exists_at(x,t) & exists_at(y,t) & 'occupies spatial region@en'(x,y,t)
editor note: BFO2 Reference: independent continuant
editor note: BFO2 Reference: spatial region
elucidation: b occupies_spatial_region r at t means that r is a spatial region in which independent continuant b is exactly located (axiom label in BFO2 Reference: [041-002])
has associated axiom(nl): every region r is occupies_spatial_region r at all times. (axiom label in BFO2 Reference: [042-002])
has associated axiom(nl): if b occupies_spatial_region r at t & b continuant_part_of b at t, then there is some r which is continuant_part_of r at t such that b occupies_spatial_region r at t. (axiom label in BFO2 Reference: [043-001])
has associated axiom(fol): (forall (r t) (if (Region r) (occupiesSpatialRegionAt r r t))) // axiom label in BFO2 CLIF: [042-002]
has associated axiom(fol): (forall (x r t) (if (occupiesSpatialRegionAt x r t) (and (SpatialRegion r) (IndependentContinuant x)))) // axiom label in BFO2 CLIF: [041-002]
has associated axiom(fol): (forall (x y r_1 t) (if (and (occupiesSpatialRegionAt x r_1 t) (continuantPartOfAt y x t)) (exists (r_2) (and (continuantPartOfAt r_2 r_1 t) (occupiesSpatialRegionAt y r_2 t))))) // axiom label in BFO2 CLIF: [043-001]

Axiom
annotated source: occupies spatial region at some time
annotated property: elucidation
annotated target: b occupies_spatial_region r at t means that r is a spatial region in which independent continuant b is exactly located (axiom label in BFO2 Reference: [041-002])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/041-002

Axiom
annotated source: occupies spatial region at some time
annotated property: has associated axiom(nl)
annotated target: every region r is occupies_spatial_region r at all times. (axiom label in BFO2 Reference: [042-002])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/042-002

Axiom
annotated source: occupies spatial region at some time
annotated property: has associated axiom(nl)
annotated target: if b occupies_spatial_region r at t & b continuant_part_of b at t, then there is some r which is continuant_part_of r at t such that b occupies_spatial_region r at t. (axiom label in BFO2 Reference: [043-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/043-001

Axiom
annotated source: occupies spatial region at some time
annotated property: has associated axiom(fol)
annotated target: (forall (r t) (if (Region r) (occupiesSpatialRegionAt r r t))) // axiom label in BFO2 CLIF: [042-002]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/042-002

Axiom
annotated source: occupies spatial region at some time
annotated property: has associated axiom(fol)
annotated target: (forall (x r t) (if (occupiesSpatialRegionAt x r t) (and (SpatialRegion r) (IndependentContinuant x)))) // axiom label in BFO2 CLIF: [041-002]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/041-002

Axiom
annotated source: occupies spatial region at some time
annotated property: has associated axiom(fol)
annotated target: (forall (x y r_1 t) (if (and (occupiesSpatialRegionAt x r_1 t) (continuantPartOfAt y x t)) (exists (r_2) (and (continuantPartOfAt r_2 r_1 t) (occupiesSpatialRegionAt y r_2 t))))) // axiom label in BFO2 CLIF: [043-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/043-001

has function at some time
type: ObjectProperty
sub property of: bearer of at some time
range: function
BFO OWL specification label: has-f_st
BFO CLIF specification label: hasFunctionAt
definition: a has_function b at t =Def. b function_of a at t. (axiom label in BFO2 Reference: [070-001])
editor note: Alan Ruttenberg: This is a binary version of a ternary time-indexed, instance level, relation. The BFO reading of the binary relation 'has function at some time@en' is: exists t, exists_at(x,t) & exists_at(y,t) & 'has function@en'(x,y,t)
has associated axiom(fol): (iff (hasFunctionAt a b t) (functionOf b a t)) // axiom label in BFO2 CLIF: [070-001]

Axiom
annotated source: has function at some time
annotated property: definition
annotated target: a has_function b at t =Def. b function_of a at t. (axiom label in BFO2 Reference: [070-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/070-001

Axiom
annotated source: has function at some time
annotated property: has associated axiom(fol)
annotated target: (iff (hasFunctionAt a b t) (functionOf b a t)) // axiom label in BFO2 CLIF: [070-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/070-001

has quality at some time
type: ObjectProperty
sub property of: bearer of at some time
range: quality
BFO OWL specification label: has-q_st

has role at some time
type: ObjectProperty
sub property of: bearer of at some time
range: role
BFO OWL specification label: has-r_st
BFO CLIF specification label: hasRoleAt
definition: a has_role b at t =Def. b role_of a at t. (axiom label in BFO2 Reference: [068-001])
editor note: Alan Ruttenberg: This is a binary version of a ternary time-indexed, instance level, relation. The BFO reading of the binary relation 'has role at some time@en' is: exists t, exists_at(x,t) & exists_at(y,t) & 'has role@en'(x,y,t)
has associated axiom(fol): (iff (hasRoleAt a b t) (roleOfAt b a t)) // axiom label in BFO2 CLIF: [068-001]

Axiom
annotated source: has role at some time
annotated property: definition
annotated target: a has_role b at t =Def. b role_of a at t. (axiom label in BFO2 Reference: [068-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/068-001

Axiom
annotated source: has role at some time
annotated property: has associated axiom(fol)
annotated target: (iff (hasRoleAt a b t) (roleOfAt b a t)) // axiom label in BFO2 CLIF: [068-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/068-001

has generic dependent at some time
type: ObjectProperty
domain: Class
  intersection of: independent continuant
  intersection of: Class
    complement of: spatial region
range: generically dependent continuant
BFO OWL specification label: has-g-dep_st
editor note: [copied from inverse property 'generically depends on at some time'] Alan Ruttenberg: This is a binary version of a ternary time-indexed, instance level, relation. The BFO reading of the binary relation 'generically depends on at some time@en' is: exists t, exists_at(x,t) & exists_at(y,t) & 'generically depends on@en'(x,y,t)
editor note: [copied from inverse property 'generically depends on at some time'] BFO2 Reference: generically dependent continuant
editor note: [copied from inverse property 'generically depends on at some time'] BFO2 Reference: independent continuant
elucidation: [copied from inverse property 'generically depends on at some time'] b g-depends on c at t1 means: b exists at t1 and c exists at t1 & for some type B it holds that (c instantiates B at t1) & necessarily, for all t (if b exists at t then some instance_of B exists at t) & not (b s-depends_on c at t1). (axiom label in BFO2 Reference: [072-002])

disposition of at all times
type: ObjectProperty
sub property of: inheres in at all times
domain: disposition
BFO OWL specification label: d-of_at
BFO CLIF specification label: dispositionOfAt
definition: a disposition_of b at t =Def. a is a disposition and a inheres_in b at t. (axiom label in BFO2 Reference: [066-001])
editor note: Alan Ruttenberg: This is a binary version of a ternary time-indexed, instance-level, relation. The BFO reading of the binary relation 'disposition of at all times@en' is: forall(t) exists_at(x,t) -> exists_at(y,t) and 'disposition of@en(x,y,t)'.
has associated axiom(fol): (iff (dispositionOf a b t) (and (Disposition a) (inheresInAt a b t))) // axiom label in BFO2 CLIF: [066-001]

Axiom
annotated source: disposition of at all times
annotated property: definition
annotated target: a disposition_of b at t =Def. a is a disposition and a inheres_in b at t. (axiom label in BFO2 Reference: [066-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/066-001

Axiom
annotated source: disposition of at all times
annotated property: has associated axiom(fol)
annotated target: (iff (dispositionOf a b t) (and (Disposition a) (inheresInAt a b t))) // axiom label in BFO2 CLIF: [066-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/066-001

exists at
type: ObjectProperty
inverse of: during which exists
domain: entity
range: temporal region
BFO OWL specification label: exists-at
BFO CLIF specification label: existsAt
editor note: BFO2 Reference: entity
editor note: BFO2 Reference: temporal region
elucidation: b exists_at t means: b is an entity which exists at some temporal region t. (axiom label in BFO2 Reference: [118-002])

Axiom
annotated source: exists at
annotated property: elucidation
annotated target: b exists_at t means: b is an entity which exists at some temporal region t. (axiom label in BFO2 Reference: [118-002])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/118-002

has disposition at some time
type: ObjectProperty
sub property of: bearer of at some time
range: disposition
BFO OWL specification label: has-d_st
BFO CLIF specification label: hasDispositionAt
definition: a has_disposition b at t =Def. b disposition_of a at t. (axiom label in BFO2 Reference: [069-001])
editor note: Alan Ruttenberg: This is a binary version of a ternary time-indexed, instance level, relation. The BFO reading of the binary relation 'has disposition at some time@en' is: exists t, exists_at(x,t) & exists_at(y,t) & 'has disposition@en'(x,y,t)
has associated axiom(fol): (iff (hasDispositionAt a b t) (dispositionOf b a t)) // axiom label in BFO2 CLIF: [069-001]

Axiom
annotated source: has disposition at some time
annotated property: definition
annotated target: a has_disposition b at t =Def. b disposition_of a at t. (axiom label in BFO2 Reference: [069-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/069-001

Axiom
annotated source: has disposition at some time
annotated property: has associated axiom(fol)
annotated target: (iff (hasDispositionAt a b t) (dispositionOf b a t)) // axiom label in BFO2 CLIF: [069-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/069-001

has material basis at all times
type: ObjectProperty
domain: disposition
range: material entity
BFO OWL specification label: has-material-basis_at
BFO CLIF specification label: hasMaterialBasisAt
example of usage: the material basis of John’s disposition to cough is the viral infection in John’s upper respiratory tract
example of usage: the material basis of the disposition to wear unevenly of John’s tires is the worn suspension of his car.
editor note: Alan Ruttenberg: This is a binary version of a ternary time-indexed, instance-level, relation. The BFO reading of the binary relation 'has material basis at all times@en' is: forall(t) exists_at(x,t) -> exists_at(y,t) and 'has material basis@en(x,y,t)'.
elucidation: b has_material_basis c at t means: b is a disposition & c is a material entity & there is some d bearer_of b at t& c continuant_part_of d at t& d has_disposition b at t because c continuant_part_of d at t. (axiom label in BFO2 Reference: [071-002])
has associated axiom(fol): (forall (x y t) (if (hasMaterialBasisAt x y t) (and (Disposition x) (MaterialEntity y) (exists (z) (and (bearerOfAt z x t) (continuantPartOfAt y z t) (exists (w) (and (Disposition w) (if (hasDisposition z w) (continuantPartOfAt y z t))))))))) // axiom label in BFO2 CLIF: [071-002]

Axiom
annotated source: has material basis at all times
annotated property: elucidation
annotated target: b has_material_basis c at t means: b is a disposition & c is a material entity & there is some d bearer_of b at t& c continuant_part_of d at t& d has_disposition b at t because c continuant_part_of d at t. (axiom label in BFO2 Reference: [071-002])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/071-002

Axiom
annotated source: has material basis at all times
annotated property: has associated axiom(fol)
annotated target: (forall (x y t) (if (hasMaterialBasisAt x y t) (and (Disposition x) (MaterialEntity y) (exists (z) (and (bearerOfAt z x t) (continuantPartOfAt y z t) (exists (w) (and (Disposition w) (if (hasDisposition z w) (continuantPartOfAt y z t))))))))) // axiom label in BFO2 CLIF: [071-002]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/071-002

has occurrent part
type: ObjectProperty
inverse of: part of occurrent
type: TransitiveProperty
domain: occurrent
range: occurrent
BFO OWL specification label: o-has-part
BFO CLIF specification label: hasOccurrentPart
example of usage: [copied from inverse property 'part of occurrent'] Mary’s 5th birthday occurrent_part_of Mary’s life
example of usage: [copied from inverse property 'part of occurrent'] The process of a footballer’s heart beating once is an occurrent part but not a temporal_part of a game of football.
example of usage: [copied from inverse property 'part of occurrent'] the first set of the tennis match occurrent_part_of the tennis match.
definition: b has_occurrent_part c = Def. c occurrent_part_of b. (axiom label in BFO2 Reference: [007-001])
editor note: [copied from inverse property 'part of occurrent'] BFO 2 Reference: a (continuant or occurrent) part of itself. We appreciate that this is counterintuitive for some users, since it implies for example that President Obama is a part of himself. However it brings benefits in simplifying the logical formalism, and it captures an important feature of identity, namely that it is the limit case of mereological inclusion.
editor note: [copied from inverse property 'part of occurrent'] BFO2 Reference: occurrent
elucidation: [copied from inverse property 'part of occurrent'] b occurrent_part_of c =Def. b is a part of c & b and c are occurrents. (axiom label in BFO2 Reference: [003-002])
has associated axiom(fol): (iff (hasOccurrentPart a b) (occurrentPartOf b a)) // axiom label in BFO2 CLIF: [007-001]

Axiom
annotated source: has occurrent part
annotated property: definition
annotated target: b has_occurrent_part c = Def. c occurrent_part_of b. (axiom label in BFO2 Reference: [007-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/007-001

Axiom
annotated source: has occurrent part
annotated property: has associated axiom(fol)
annotated target: (iff (hasOccurrentPart a b) (occurrentPartOf b a)) // axiom label in BFO2 CLIF: [007-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/007-001

has proper occurrent part
type: ObjectProperty
sub property of: has occurrent part
inverse of: proper part of occurrent
type: TransitiveProperty
domain: occurrent
range: occurrent
BFO OWL specification label: o-has-ppart
BFO CLIF specification label: hasProperOccurrentPart
definition: [copied from inverse property 'proper part of occurrent'] b proper_occurrent_part_of c =Def. b occurrent_part_of c & b and c are not identical. (axiom label in BFO2 Reference: [005-001])
definition: b has_proper_occurrent_part c = Def. c proper_occurrent_part_of b. [XXX-001

has profile
type: ObjectProperty
inverse of: process profile of
domain: process
range: process profile
BFO OWL specification label: has-profile

has temporal part
type: ObjectProperty
sub property of: has occurrent part
inverse of: temporal part of
type: TransitiveProperty
domain: occurrent
range: occurrent
BFO OWL specification label: has-t-part
example of usage: [copied from inverse property 'temporal part of'] the 4th year of your life is a temporal part of your life\. The first quarter of a game of football is a temporal part of the whole game\. The process of your heart beating from 4pm to 5pm today is a temporal part of the entire process of your heart beating.\ The 4th year of your life is a temporal part of your life
example of usage: [copied from inverse property 'temporal part of'] the process boundary which separates the 3rd and 4th years of your life.
example of usage: [copied from inverse property 'temporal part of'] your heart beating from 4pm to 5pm today is a temporal part of the process of your heart beating
definition: [copied from inverse property 'temporal part of'] b proper_temporal_part_of c =Def. b temporal_part_of c & not (b = c). (axiom label in BFO2 Reference: [116-001])
definition: [copied from inverse property 'temporal part of'] b temporal_part_of c =Def.b occurrent_part_of c & & for some temporal region t, b occupies_temporal_region t & for all occurrents d, t (if d occupies_temporal_region t & t? occurrent_part_of t then (d occurrent_part_of a iff d occurrent_part_of b)). (axiom label in BFO2 Reference: [078-003])

has spatial occupant at some time
type: ObjectProperty
domain: spatial region
range: independent continuant
BFO OWL specification label: r-location-of_st
editor note: [copied from inverse property 'occupies spatial region at some time'] Alan Ruttenberg: This is a binary version of a ternary time-indexed, instance level, relation. The BFO reading of the binary relation 'occupies spatial region at some time@en' is: exists t, exists_at(x,t) & exists_at(y,t) & 'occupies spatial region@en'(x,y,t)
editor note: [copied from inverse property 'occupies spatial region at some time'] BFO2 Reference: independent continuant
editor note: [copied from inverse property 'occupies spatial region at some time'] BFO2 Reference: spatial region
elucidation: [copied from inverse property 'occupies spatial region at some time'] b occupies_spatial_region r at t means that r is a spatial region in which independent continuant b is exactly located (axiom label in BFO2 Reference: [041-002])

has specific dependent at some time
type: ObjectProperty
inverse of: specifically depends on at some time
domain: Class
  union of: process
  union of: specifically dependent continuant
  union of: Class
    intersection of: independent continuant
    intersection of: Class
      complement of: spatial region
range: Class
  union of: process
  union of: specifically dependent continuant
BFO OWL specification label: has-s-dep_st
example of usage: [copied from inverse property 'specifically depends on at some time'] A pain s-depends_on the organism that is experiencing the pain
example of usage: [copied from inverse property 'specifically depends on at some time'] a gait s-depends_on the walking object. (All at some specific time.)
example of usage: [copied from inverse property 'specifically depends on at some time'] a shape s-depends_on the shaped object
example of usage: [copied from inverse property 'specifically depends on at some time'] one-sided s-dependence of a dependent continuant on an independent continuant: an instance of headache s-depends_on some head
example of usage: [copied from inverse property 'specifically depends on at some time'] one-sided s-dependence of a dependent continuant on an independent continuant: an instance of temperature s-depends_on some organism
example of usage: [copied from inverse property 'specifically depends on at some time'] one-sided s-dependence of a process on something: a process of cell death s-depends_on a cell
example of usage: [copied from inverse property 'specifically depends on at some time'] one-sided s-dependence of a process on something: an instance of seeing (a relational process) s-depends_on some organism and on some seen entity, which may be an occurrent or a continuant
example of usage: [copied from inverse property 'specifically depends on at some time'] one-sided s-dependence of one occurrent on another: a process of answering a question is dependent on a prior process of asking a question
example of usage: [copied from inverse property 'specifically depends on at some time'] one-sided s-dependence of one occurrent on another: a process of obeying a command is dependent on a prior process of issuing a command
example of usage: [copied from inverse property 'specifically depends on at some time'] one-sided s-dependence of one occurrent on multiple independent continuants: a relational process of hitting a ball with a cricket bat
example of usage: [copied from inverse property 'specifically depends on at some time'] one-sided s-dependence of one occurrent on multiple independent continuants: a relational process of paying cash to a merchant in exchange for a bag of figs
example of usage: [copied from inverse property 'specifically depends on at some time'] reciprocal s-dependence between occurrents: a process of buying and the associated process of selling
example of usage: [copied from inverse property 'specifically depends on at some time'] reciprocal s-dependence between occurrents: a process of increasing the volume of a portion of gas while temperature remains constant and the associated process of decreasing the pressure exerted by the gas
example of usage: [copied from inverse property 'specifically depends on at some time'] reciprocal s-dependence between occurrents: in a game of chess the process of playing with the white pieces is mutually dependent on the process of playing with the black pieces
example of usage: [copied from inverse property 'specifically depends on at some time'] the one-sided dependence of an occurrent on an independent continuant: football match on the players, the ground, the ball
example of usage: [copied from inverse property 'specifically depends on at some time'] the one-sided dependence of an occurrent on an independent continuant: handwave on a hand
example of usage: [copied from inverse property 'specifically depends on at some time'] the three-sided reciprocal s-dependence of the hue, saturation and brightness of a color [45
example of usage: [copied from inverse property 'specifically depends on at some time'] the three-sided reciprocal s-dependence of the pitch, timbre and volume of a tone [45
example of usage: [copied from inverse property 'specifically depends on at some time'] the two-sided reciprocal s-dependence of the roles of husband and wife [20
editor note: [copied from inverse property 'specifically depends on at some time'] Alan Ruttenberg: This is a binary version of a ternary time-indexed, instance level, relation. The BFO reading of the binary relation 'specifically depends on at some time@en' is: exists t, exists_at(x,t) & exists_at(y,t) & 'specifically depends on@en'(x,y,t)
editor note: [copied from inverse property 'specifically depends on at some time'] BFO 2 Reference: An entity – for example an act of communication or a game of football – can s-depends_on more than one entity. Complex phenomena for example in the psychological and social realms (such as inferring, commanding and requesting) or in the realm of multi-organismal biological processes (such as infection and resistance), will involve multiple families of dependence relations, involving both continuants and occurrents [1, 4, 28
editor note: [copied from inverse property 'specifically depends on at some time'] BFO 2 Reference: S-dependence is just one type of dependence among many; it is what, in the literature, is referred to as ‘existential dependence’ [87, 46, 65, 20
editor note: [copied from inverse property 'specifically depends on at some time'] BFO 2 Reference: the relation of s-depends_on does not in every case require simultaneous existence of its relata. Note the difference between such cases and the cases of continuant universals defined historically: the act of answering depends existentially on the prior act of questioning; the human being who was baptized or who answered a question does not himself depend existentially on the prior act of baptism or answering. He would still exist even if these acts had never taken place.
editor note: [copied from inverse property 'specifically depends on at some time'] BFO2 Reference: specifically dependent continuant\; process; process boundary
elucidation: [copied from inverse property 'specifically depends on at some time'] To say that b s-depends_on a at t is to say that b and c do not share common parts & b is of its nature such that it cannot exist unless c exists & b is not a boundary of c and b is not a site of which c is the host [64

has spatiotemporal occupant
type: ObjectProperty
inverse of: occupies spatiotemporal region
domain: spatiotemporal region
range: occurrent
BFO OWL specification label: occupied-by
editor note: [copied from inverse property 'occupies spatiotemporal region'] BFO 2 Reference: The occupies_spatiotemporal_region and occupies_temporal_region relations are the counterpart, on the occurrent side, of the relation occupies_spatial_region.
elucidation: [copied from inverse property 'occupies spatiotemporal region'] p occupies_spatiotemporal_region s. This is a primitive relation between an occurrent p and the spatiotemporal region s which is its spatiotemporal extent. (axiom label in BFO2 Reference: [082-003])

material basis of at some time
type: ObjectProperty
domain: material entity
range: disposition
BFO OWL specification label: material-basis-of_st

member part of at some time
type: ObjectProperty
sub property of: proper part of continuant at some time
sub property of: part of continuant at some time
domain: continuant
range: continuant
BFO OWL specification label: member-part-of_st
BFO CLIF specification label: memberPartOfAt
example of usage: each piece in a chess set is a member part of the chess set; each Beatle in the collection called The Beatles is a member part of The Beatles.
example of usage: each tree in a forest is a member_part of the forest
definition: b member_part_of c at t =Def. b is an object & there is at t a mutually exhaustive and pairwise disjoint partition of c into objects x1, …, xn (for some n > 1) with b = xi for some 1 ? i ? n. (axiom label in BFO2 Reference: [026-004])
editor note: Alan Ruttenberg: This is a binary version of a ternary time-indexed, instance level, relation. The BFO reading of the binary relation 'member part of at some time@en' is: exists t, exists_at(x,t) & exists_at(y,t) & 'member part of@en'(x,y,t)
editor note: BFO2 Reference: object
editor note: BFO2 Reference: object aggregate
has associated axiom(nl): if b member_part_of c at t then b continuant_part_of c at t. (axiom label in BFO2 Reference: [104-001])
has associated axiom(fol): (forall (x y t) (if (memberPartOfAt x y t) (continuantPartOfAt x y t))) // axiom label in BFO2 CLIF: [104-001]

Axiom
annotated source: member part of at some time
annotated property: definition
annotated target: b member_part_of c at t =Def. b is an object & there is at t a mutually exhaustive and pairwise disjoint partition of c into objects x1, …, xn (for some n > 1) with b = xi for some 1 ? i ? n. (axiom label in BFO2 Reference: [026-004])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/026-004

Axiom
annotated source: member part of at some time
annotated property: has associated axiom(nl)
annotated target: if b member_part_of c at t then b continuant_part_of c at t. (axiom label in BFO2 Reference: [104-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/104-001

Axiom
annotated source: member part of at some time
annotated property: has associated axiom(fol)
annotated target: (forall (x y t) (if (memberPartOfAt x y t) (continuantPartOfAt x y t))) // axiom label in BFO2 CLIF: [104-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/104-001

occupies spatiotemporal region
type: ObjectProperty
domain: occurrent
range: spatiotemporal region
BFO OWL specification label: occupies
BFO CLIF specification label: occupiesSpatiotemporalRegion
editor note: BFO 2 Reference: The occupies_spatiotemporal_region and occupies_temporal_region relations are the counterpart, on the occurrent side, of the relation occupies_spatial_region.
elucidation: p occupies_spatiotemporal_region s. This is a primitive relation between an occurrent p and the spatiotemporal region s which is its spatiotemporal extent. (axiom label in BFO2 Reference: [082-003])

Axiom
annotated source: occupies spatiotemporal region
annotated property: elucidation
annotated target: p occupies_spatiotemporal_region s. This is a primitive relation between an occurrent p and the spatiotemporal region s which is its spatiotemporal extent. (axiom label in BFO2 Reference: [082-003])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/082-003

part of occurrent
type: ObjectProperty
type: TransitiveProperty
domain: occurrent
range: occurrent
BFO OWL specification label: o-part-of
BFO CLIF specification label: occurrentPartOf
example of usage: Mary’s 5th birthday occurrent_part_of Mary’s life
example of usage: The process of a footballer’s heart beating once is an occurrent part but not a temporal_part of a game of football.
example of usage: the first set of the tennis match occurrent_part_of the tennis match.
definition: [copied from inverse property 'has occurrent part'] b has_occurrent_part c = Def. c occurrent_part_of b. (axiom label in BFO2 Reference: [007-001])
editor note: BFO 2 Reference: a (continuant or occurrent) part of itself. We appreciate that this is counterintuitive for some users, since it implies for example that President Obama is a part of himself. However it brings benefits in simplifying the logical formalism, and it captures an important feature of identity, namely that it is the limit case of mereological inclusion.
editor note: BFO2 Reference: occurrent
elucidation: b occurrent_part_of c =Def. b is a part of c & b and c are occurrents. (axiom label in BFO2 Reference: [003-002])
has associated axiom(nl): occurrent_part_of is antisymmetric. (axiom label in BFO2 Reference: [123-001])
has associated axiom(nl): occurrent_part_of is reflexive (every occurrent entity is an occurrent_part_of itself). (axiom label in BFO2 Reference: [113-002])
has associated axiom(nl): occurrent_part_of is transitive. (axiom label in BFO2 Reference: [112-001])
has associated axiom(nl): occurrent_part_of satisfies unique product. (axiom label in BFO2 Reference: [125-001])
has associated axiom(nl): occurrent_part_of satisfies weak supplementation. (axiom label in BFO2 Reference: [124-001])
has associated axiom(fol): (forall (x y t) (if (and (occurrentPartOf x y t) (not (= x y))) (exists (z) (and (occurrentPartOf z y t) (not (exists (w) (and (occurrentPartOf w x t) (occurrentPartOf w z t)))))))) // axiom label in BFO2 CLIF: [124-001]
has associated axiom(fol): (forall (x y t) (if (and (occurrentPartOf x y t) (occurrentPartOf y x t)) (= x y))) // axiom label in BFO2 CLIF: [123-001]
has associated axiom(fol): (forall (x y t) (if (exists (v) (and (occurrentPartOf v x t) (occurrentPartOf v y t))) (exists (z) (forall (u w) (iff (iff (occurrentPartOf w u t) (and (occurrentPartOf w x t) (occurrentPartOf w y t))) (= z u)))))) // axiom label in BFO2 CLIF: [125-001]
has associated axiom(fol): (forall (x y z) (if (and (occurrentPartOf x y) (occurrentPartOf y z)) (occurrentPartOf x z))) // axiom label in BFO2 CLIF: [112-001]
has associated axiom(fol): (forall (x) (if (Occurrent x) (occurrentPartOf x x))) // axiom label in BFO2 CLIF: [113-002]

Axiom
annotated source: part of occurrent
annotated property: elucidation
annotated target: b occurrent_part_of c =Def. b is a part of c & b and c are occurrents. (axiom label in BFO2 Reference: [003-002])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/003-002

Axiom
annotated source: part of occurrent
annotated property: has associated axiom(nl)
annotated target: occurrent_part_of is antisymmetric. (axiom label in BFO2 Reference: [123-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/123-001

Axiom
annotated source: part of occurrent
annotated property: has associated axiom(nl)
annotated target: occurrent_part_of is reflexive (every occurrent entity is an occurrent_part_of itself). (axiom label in BFO2 Reference: [113-002])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/113-002

Axiom
annotated source: part of occurrent
annotated property: has associated axiom(nl)
annotated target: occurrent_part_of is transitive. (axiom label in BFO2 Reference: [112-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/112-001

Axiom
annotated source: part of occurrent
annotated property: has associated axiom(nl)
annotated target: occurrent_part_of satisfies unique product. (axiom label in BFO2 Reference: [125-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/125-001

Axiom
annotated source: part of occurrent
annotated property: has associated axiom(nl)
annotated target: occurrent_part_of satisfies weak supplementation. (axiom label in BFO2 Reference: [124-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/124-001

Axiom
annotated source: part of occurrent
annotated property: has associated axiom(fol)
annotated target: (forall (x y t) (if (and (occurrentPartOf x y t) (not (= x y))) (exists (z) (and (occurrentPartOf z y t) (not (exists (w) (and (occurrentPartOf w x t) (occurrentPartOf w z t)))))))) // axiom label in BFO2 CLIF: [124-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/124-001

Axiom
annotated source: part of occurrent
annotated property: has associated axiom(fol)
annotated target: (forall (x y t) (if (and (occurrentPartOf x y t) (occurrentPartOf y x t)) (= x y))) // axiom label in BFO2 CLIF: [123-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/123-001

Axiom
annotated source: part of occurrent
annotated property: has associated axiom(fol)
annotated target: (forall (x y t) (if (exists (v) (and (occurrentPartOf v x t) (occurrentPartOf v y t))) (exists (z) (forall (u w) (iff (iff (occurrentPartOf w u t) (and (occurrentPartOf w x t) (occurrentPartOf w y t))) (= z u)))))) // axiom label in BFO2 CLIF: [125-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/125-001

Axiom
annotated source: part of occurrent
annotated property: has associated axiom(fol)
annotated target: (forall (x y z) (if (and (occurrentPartOf x y) (occurrentPartOf y z)) (occurrentPartOf x z))) // axiom label in BFO2 CLIF: [112-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/112-001

Axiom
annotated source: part of occurrent
annotated property: has associated axiom(fol)
annotated target: (forall (x) (if (Occurrent x) (occurrentPartOf x x))) // axiom label in BFO2 CLIF: [113-002]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/113-002

process profile of
type: ObjectProperty
domain: process profile
range: process
BFO OWL specification label: profile-of
BFO CLIF specification label: processProfileOf

proper temporal part of
type: ObjectProperty
sub property of: proper part of occurrent
sub property of: temporal part of
inverse of: has proper temporal part
type: TransitiveProperty
domain: occurrent
range: occurrent
BFO OWL specification label: t-ppart-of
BFO CLIF specification label: properTemporalPartOf

proper part of continuant at all times
type: ObjectProperty
sub property of: proper part of continuant at some time
sub property of: part of continuant at all times
type: TransitiveProperty
BFO OWL specification label: c-ppart-of_at
BFO CLIF specification label: properContinuantPartOfAt
definition: b proper_continuant_part_of c at t =Def. b continuant_part_of c at t & b and c are not identical. (axiom label in BFO2 Reference: [004-001])
editor note: Alan Ruttenberg: This is a binary version of a ternary time-indexed, instance-level, relation. The BFO reading of the binary relation 'proper part of continuant at all times@en' is: forall(t) exists_at(x,t) -> exists_at(y,t) and 'proper part of continuant@en(x,y,t)'.
has associated axiom(fol): (iff (properContinuantPartOfAt a b t) (and (continuantPartOfAt a b t) (not (= a b)))) // axiom label in BFO2 CLIF: [004-001]

Axiom
annotated source: proper part of continuant at all times
annotated property: definition
annotated target: b proper_continuant_part_of c at t =Def. b continuant_part_of c at t & b and c are not identical. (axiom label in BFO2 Reference: [004-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/004-001

Axiom
annotated source: proper part of continuant at all times
annotated property: has associated axiom(fol)
annotated target: (iff (properContinuantPartOfAt a b t) (and (continuantPartOfAt a b t) (not (= a b)))) // axiom label in BFO2 CLIF: [004-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/004-001

proper part of occurrent
type: ObjectProperty
sub property of: part of occurrent
type: TransitiveProperty
domain: occurrent
range: occurrent
BFO OWL specification label: o-ppart-of
BFO CLIF specification label: properOccurrentPartOf
definition: [copied from inverse property 'has proper occurrent part'] b has_proper_occurrent_part c = Def. c proper_occurrent_part_of b. [XXX-001
definition: b proper_occurrent_part_of c =Def. b occurrent_part_of c & b and c are not identical. (axiom label in BFO2 Reference: [005-001])
has associated axiom(fol): (iff (properOccurrentPartOf a b) (and (occurrentPartOf a b) (not (= a b)))) // axiom label in BFO2 CLIF: [005-001]

Axiom
annotated source: proper part of occurrent
annotated property: definition
annotated target: b proper_occurrent_part_of c =Def. b occurrent_part_of c & b and c are not identical. (axiom label in BFO2 Reference: [005-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/005-001

Axiom
annotated source: proper part of occurrent
annotated property: has associated axiom(fol)
annotated target: (iff (properOccurrentPartOf a b) (and (occurrentPartOf a b) (not (= a b)))) // axiom label in BFO2 CLIF: [005-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/005-001

temporal part of
type: ObjectProperty
sub property of: part of occurrent
type: TransitiveProperty
domain: occurrent
range: occurrent
BFO OWL specification label: t-part-of
BFO CLIF specification label: temporalPartOf
example of usage: the 4th year of your life is a temporal part of your life\. The first quarter of a game of football is a temporal part of the whole game\. The process of your heart beating from 4pm to 5pm today is a temporal part of the entire process of your heart beating.\ The 4th year of your life is a temporal part of your life
example of usage: the process boundary which separates the 3rd and 4th years of your life.
example of usage: your heart beating from 4pm to 5pm today is a temporal part of the process of your heart beating
definition: b proper_temporal_part_of c =Def. b temporal_part_of c & not (b = c). (axiom label in BFO2 Reference: [116-001])
definition: b temporal_part_of c =Def.b occurrent_part_of c & & for some temporal region t, b occupies_temporal_region t & for all occurrents d, t (if d occupies_temporal_region t & t? occurrent_part_of t then (d occurrent_part_of a iff d occurrent_part_of b)). (axiom label in BFO2 Reference: [078-003])
has associated axiom(nl): if b proper_temporal_part_of c, then there is some d which is a proper_temporal_part_of c and which shares no parts with b. (axiom label in BFO2 Reference: [117-002])
has associated axiom(fol): (forall (x y) (if (properTemporalPartOf x y) (exists (z) (and (properTemporalPartOf z y) (not (exists (w) (and (temporalPartOf w x) (temporalPartOf w z)))))))) // axiom label in BFO2 CLIF: [117-002]
has associated axiom(fol): (iff (properTemporalPartOf a b) (and (temporalPartOf a b) (not (= a b)))) // axiom label in BFO2 CLIF: [116-001]
has associated axiom(fol): (iff (temporalPartOf a b) (and (occurrentPartOf a b) (exists (t) (and (TemporalRegion t) (occupiesSpatioTemporalRegion a t))) (forall (c t_1) (if (and (Occurrent c) (occupiesSpatioTemporalRegion c t_1) (occurrentPartOf t_1 r)) (iff (occurrentPartOf c a) (occurrentPartOf c b)))))) // axiom label in BFO2 CLIF: [078-003]

Axiom
annotated source: temporal part of
annotated property: definition
annotated target: b proper_temporal_part_of c =Def. b temporal_part_of c & not (b = c). (axiom label in BFO2 Reference: [116-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/116-001

Axiom
annotated source: temporal part of
annotated property: definition
annotated target: b temporal_part_of c =Def.b occurrent_part_of c & & for some temporal region t, b occupies_temporal_region t & for all occurrents d, t (if d occupies_temporal_region t & t? occurrent_part_of t then (d occurrent_part_of a iff d occurrent_part_of b)). (axiom label in BFO2 Reference: [078-003])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/078-003

Axiom
annotated source: temporal part of
annotated property: has associated axiom(nl)
annotated target: if b proper_temporal_part_of c, then there is some d which is a proper_temporal_part_of c and which shares no parts with b. (axiom label in BFO2 Reference: [117-002])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/117-002

Axiom
annotated source: temporal part of
annotated property: has associated axiom(fol)
annotated target: (forall (x y) (if (properTemporalPartOf x y) (exists (z) (and (properTemporalPartOf z y) (not (exists (w) (and (temporalPartOf w x) (temporalPartOf w z)))))))) // axiom label in BFO2 CLIF: [117-002]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/117-002

Axiom
annotated source: temporal part of
annotated property: has associated axiom(fol)
annotated target: (iff (properTemporalPartOf a b) (and (temporalPartOf a b) (not (= a b)))) // axiom label in BFO2 CLIF: [116-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/116-001

Axiom
annotated source: temporal part of
annotated property: has associated axiom(fol)
annotated target: (iff (temporalPartOf a b) (and (occurrentPartOf a b) (exists (t) (and (TemporalRegion t) (occupiesSpatioTemporalRegion a t))) (forall (c t_1) (if (and (Occurrent c) (occupiesSpatioTemporalRegion c t_1) (occurrentPartOf t_1 r)) (iff (occurrentPartOf c a) (occurrentPartOf c b)))))) // axiom label in BFO2 CLIF: [078-003]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/078-003

projects onto spatial region at some time
type: ObjectProperty
inverse of: spatial projection of spatiotemporal at some time
domain: spatiotemporal region
range: spatial region
BFO OWL specification label: st-projects-onto-s_st

spatial projection of spatiotemporal at some time
type: ObjectProperty
domain: spatial region
range: spatiotemporal region
BFO OWL specification label: s-projection-of-st_st

projects onto temporal region
type: ObjectProperty
sub property of: exists at
inverse of: temporal projection of spatiotemporal
domain: spatiotemporal region
range: temporal region
BFO OWL specification label: st-projects-onto-t

temporal projection of spatiotemporal
type: ObjectProperty
sub property of: during which exists
domain: temporal region
range: spatiotemporal region
BFO OWL specification label: t-projection-of-st

occupies temporal region
type: ObjectProperty
sub property of: exists at
inverse of: has temporal occupant
domain: occurrent
range: temporal region
BFO OWL specification label: spans
BFO CLIF specification label: occupiesTemporalRegion
elucidation: p occupies_temporal_region t. This is a primitive relation between an occurrent p and the temporal region t upon which the spatiotemporal region p occupies_spatiotemporal_region projects. (axiom label in BFO2 Reference: [132-001])

Axiom
annotated source: occupies temporal region
annotated property: elucidation
annotated target: p occupies_temporal_region t. This is a primitive relation between an occurrent p and the temporal region t upon which the spatiotemporal region p occupies_spatiotemporal_region projects. (axiom label in BFO2 Reference: [132-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/132-001

has temporal occupant
type: ObjectProperty
sub property of: during which exists
domain: temporal region
range: occurrent
BFO OWL specification label: span-of
BFO CLIF specification label: spanOf
elucidation: [copied from inverse property 'occupies temporal region'] p occupies_temporal_region t. This is a primitive relation between an occurrent p and the temporal region t upon which the spatiotemporal region p occupies_spatiotemporal_region projects. (axiom label in BFO2 Reference: [132-001])

during which exists
type: ObjectProperty
domain: temporal region
range: entity
BFO OWL specification label: during-which-exists
editor note: [copied from inverse property 'exists at'] BFO2 Reference: entity
editor note: [copied from inverse property 'exists at'] BFO2 Reference: temporal region
elucidation: [copied from inverse property 'exists at'] b exists_at t means: b is an entity which exists at some temporal region t. (axiom label in BFO2 Reference: [118-002])

bearer of at all times
type: ObjectProperty
sub property of: has specific dependent at all times
domain: Class
  intersection of: independent continuant
  intersection of: Class
    complement of: spatial region
range: specifically dependent continuant
BFO OWL specification label: bearer-of_at
BFO CLIF specification label: bearerOfAt
definition: b bearer_of c at t =Def. c s-depends_on b at t & b is an independent continuant that is not a spatial region. (axiom label in BFO2 Reference: [053-004])
editor note: Alan Ruttenberg: This is a binary version of a ternary time-indexed, instance-level, relation. The BFO reading of the binary relation 'bearer of at all times@en' is: forall(t) exists_at(x,t) -> exists_at(y,t) and 'bearer of@en(x,y,t)'.
editor note: BFO2 Reference: independent continuant that is not a spatial region
editor note: BFO2 Reference: specifically dependent continuant
has associated axiom(fol): (iff (bearerOfAt a b t) (and (specificallyDependsOnAt b a t) (IndependentContinuant a) (not (SpatialRegion a)) (existsAt b t))) // axiom label in BFO2 CLIF: [053-004]

Axiom
annotated source: bearer of at all times
annotated property: definition
annotated target: b bearer_of c at t =Def. c s-depends_on b at t & b is an independent continuant that is not a spatial region. (axiom label in BFO2 Reference: [053-004])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/053-004

Axiom
annotated source: bearer of at all times
annotated property: has associated axiom(fol)
annotated target: (iff (bearerOfAt a b t) (and (specificallyDependsOnAt b a t) (IndependentContinuant a) (not (SpatialRegion a)) (existsAt b t))) // axiom label in BFO2 CLIF: [053-004]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/053-004

has quality at all times
type: ObjectProperty
sub property of: bearer of at all times
range: quality
BFO OWL specification label: has-q_at

has function at all times
type: ObjectProperty
sub property of: bearer of at all times
range: function
BFO OWL specification label: has-f_at
BFO CLIF specification label: hasFunctionAt
definition: a has_function b at t =Def. b function_of a at t. (axiom label in BFO2 Reference: [070-001])
editor note: Alan Ruttenberg: This is a binary version of a ternary time-indexed, instance-level, relation. The BFO reading of the binary relation 'has function at all times@en' is: forall(t) exists_at(x,t) -> exists_at(y,t) and 'has function@en(x,y,t)'.
has associated axiom(fol): (iff (hasFunctionAt a b t) (functionOf b a t)) // axiom label in BFO2 CLIF: [070-001]

Axiom
annotated source: has function at all times
annotated property: definition
annotated target: a has_function b at t =Def. b function_of a at t. (axiom label in BFO2 Reference: [070-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/070-001

Axiom
annotated source: has function at all times
annotated property: has associated axiom(fol)
annotated target: (iff (hasFunctionAt a b t) (functionOf b a t)) // axiom label in BFO2 CLIF: [070-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/070-001

has role at all times
type: ObjectProperty
sub property of: bearer of at all times
range: role
BFO OWL specification label: has-r_at
BFO CLIF specification label: hasRoleAt
definition: a has_role b at t =Def. b role_of a at t. (axiom label in BFO2 Reference: [068-001])
editor note: Alan Ruttenberg: This is a binary version of a ternary time-indexed, instance-level, relation. The BFO reading of the binary relation 'has role at all times@en' is: forall(t) exists_at(x,t) -> exists_at(y,t) and 'has role@en(x,y,t)'.
has associated axiom(fol): (iff (hasRoleAt a b t) (roleOfAt b a t)) // axiom label in BFO2 CLIF: [068-001]

Axiom
annotated source: has role at all times
annotated property: definition
annotated target: a has_role b at t =Def. b role_of a at t. (axiom label in BFO2 Reference: [068-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/068-001

Axiom
annotated source: has role at all times
annotated property: has associated axiom(fol)
annotated target: (iff (hasRoleAt a b t) (roleOfAt b a t)) // axiom label in BFO2 CLIF: [068-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/068-001

has disposition at all times
type: ObjectProperty
sub property of: bearer of at all times
range: disposition
BFO OWL specification label: has-d_at
BFO CLIF specification label: hasDispositionAt
definition: a has_disposition b at t =Def. b disposition_of a at t. (axiom label in BFO2 Reference: [069-001])
editor note: Alan Ruttenberg: This is a binary version of a ternary time-indexed, instance-level, relation. The BFO reading of the binary relation 'has disposition at all times@en' is: forall(t) exists_at(x,t) -> exists_at(y,t) and 'has disposition@en(x,y,t)'.
has associated axiom(fol): (iff (hasDispositionAt a b t) (dispositionOf b a t)) // axiom label in BFO2 CLIF: [069-001]

Axiom
annotated source: has disposition at all times
annotated property: definition
annotated target: a has_disposition b at t =Def. b disposition_of a at t. (axiom label in BFO2 Reference: [069-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/069-001

Axiom
annotated source: has disposition at all times
annotated property: has associated axiom(fol)
annotated target: (iff (hasDispositionAt a b t) (dispositionOf b a t)) // axiom label in BFO2 CLIF: [069-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/069-001

material basis of at all times
type: ObjectProperty
sub property of: material basis of at some time
domain: material entity
range: disposition
BFO OWL specification label: material-basis-of_at

participates in at all times
type: ObjectProperty
sub property of: participates in
BFO OWL specification label: participates-in_at
BFO CLIF specification label: participatesInAt

has specific dependent at all times
type: ObjectProperty
sub property of: has specific dependent at some time
BFO OWL specification label: has-s-dep_at

specifically depends on at some time
type: ObjectProperty
domain: Class
  union of: process
  union of: specifically dependent continuant
range: Class
  union of: process
  union of: specifically dependent continuant
  union of: Class
    intersection of: independent continuant
    intersection of: Class
      complement of: spatial region
BFO OWL specification label: s-depends-on_st
BFO CLIF specification label: specificallyDependsOn
example of usage: A pain s-depends_on the organism that is experiencing the pain
example of usage: a gait s-depends_on the walking object. (All at some specific time.)
example of usage: a shape s-depends_on the shaped object
example of usage: one-sided s-dependence of a dependent continuant on an independent continuant: an instance of headache s-depends_on some head
example of usage: one-sided s-dependence of a dependent continuant on an independent continuant: an instance of temperature s-depends_on some organism
example of usage: one-sided s-dependence of a process on something: a process of cell death s-depends_on a cell
example of usage: one-sided s-dependence of a process on something: an instance of seeing (a relational process) s-depends_on some organism and on some seen entity, which may be an occurrent or a continuant
example of usage: one-sided s-dependence of one occurrent on another: a process of answering a question is dependent on a prior process of asking a question
example of usage: one-sided s-dependence of one occurrent on another: a process of obeying a command is dependent on a prior process of issuing a command
example of usage: one-sided s-dependence of one occurrent on multiple independent continuants: a relational process of hitting a ball with a cricket bat
example of usage: one-sided s-dependence of one occurrent on multiple independent continuants: a relational process of paying cash to a merchant in exchange for a bag of figs
example of usage: reciprocal s-dependence between occurrents: a process of buying and the associated process of selling
example of usage: reciprocal s-dependence between occurrents: a process of increasing the volume of a portion of gas while temperature remains constant and the associated process of decreasing the pressure exerted by the gas
example of usage: reciprocal s-dependence between occurrents: in a game of chess the process of playing with the white pieces is mutually dependent on the process of playing with the black pieces
example of usage: the one-sided dependence of an occurrent on an independent continuant: football match on the players, the ground, the ball
example of usage: the one-sided dependence of an occurrent on an independent continuant: handwave on a hand
example of usage: the three-sided reciprocal s-dependence of the hue, saturation and brightness of a color [45
example of usage: the three-sided reciprocal s-dependence of the pitch, timbre and volume of a tone [45
example of usage: the two-sided reciprocal s-dependence of the roles of husband and wife [20
editor note: Alan Ruttenberg: This is a binary version of a ternary time-indexed, instance level, relation. The BFO reading of the binary relation 'specifically depends on at some time@en' is: exists t, exists_at(x,t) & exists_at(y,t) & 'specifically depends on@en'(x,y,t)
editor note: BFO 2 Reference: An entity – for example an act of communication or a game of football – can s-depends_on more than one entity. Complex phenomena for example in the psychological and social realms (such as inferring, commanding and requesting) or in the realm of multi-organismal biological processes (such as infection and resistance), will involve multiple families of dependence relations, involving both continuants and occurrents [1, 4, 28
editor note: BFO 2 Reference: S-dependence is just one type of dependence among many; it is what, in the literature, is referred to as ‘existential dependence’ [87, 46, 65, 20
editor note: BFO 2 Reference: the relation of s-depends_on does not in every case require simultaneous existence of its relata. Note the difference between such cases and the cases of continuant universals defined historically: the act of answering depends existentially on the prior act of questioning; the human being who was baptized or who answered a question does not himself depend existentially on the prior act of baptism or answering. He would still exist even if these acts had never taken place.
editor note: BFO2 Reference: specifically dependent continuant\; process; process boundary
elucidation: To say that b s-depends_on a at t is to say that b and c do not share common parts & b is of its nature such that it cannot exist unless c exists & b is not a boundary of c and b is not a site of which c is the host [64
has associated axiom(nl): If b is s-depends_on something at some time, then b is not a material entity. (axiom label in BFO2 Reference: [052-001])
has associated axiom(nl): If b s-depends_on something at t, then there is some c, which is an independent continuant and not a spatial region, such that b s-depends_on c at t. (axiom label in BFO2 Reference: [136-001])
has associated axiom(nl): If occurrent b s-depends_on some independent continuant c at t, then b s-depends_on c at every time at which b exists. (axiom label in BFO2 Reference: [015-002])
has associated axiom(nl): an entity does not s-depend_on any of its (continuant or occurrent) parts or on anything it is part of. (axiom label in BFO2 Reference: [013-002])
has associated axiom(nl): if b s-depends_on c at t & c s-depends_on d at t then b s-depends_on d at t. (axiom label in BFO2 Reference: [054-002])
has associated axiom(fol): (forall (x y t) (if (and (Entity x) (or (continuantPartOfAt y x t) (continuantPartOfAt x y t) (occurrentPartOf x y) (occurrentPartOf y x))) (not (specificallyDependsOnAt x y t)))) // axiom label in BFO2 CLIF: [013-002]
has associated axiom(fol): (forall (x y t) (if (and (Occurrent x) (IndependentContinuant y) (specificallyDependsOnAt x y t)) (forall (t_1) (if (existsAt x t_1) (specificallyDependsOnAt x y t_1))))) // axiom label in BFO2 CLIF: [015-002]
has associated axiom(fol): (forall (x y t) (if (specificallyDependsOnAt x y t) (exists (z) (and (IndependentContinuant z) (not (SpatialRegion z)) (specificallyDependsOnAt x z t))))) // axiom label in BFO2 CLIF: [136-001]
has associated axiom(fol): (forall (x y z t) (if (and (specificallyDependsOnAt x y t) (specificallyDependsOnAt y z t)) (specificallyDependsOnAt x z t))) // axiom label in BFO2 CLIF: [054-002]
has associated axiom(fol): (forall (x) (if (exists (y t) (specificallyDependsOnAt x y t)) (not (MaterialEntity x)))) // axiom label in BFO2 CLIF: [052-001]

Axiom
annotated source: specifically depends on at some time
annotated property: has associated axiom(nl)
annotated target: If b is s-depends_on something at some time, then b is not a material entity. (axiom label in BFO2 Reference: [052-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/052-001

Axiom
annotated source: specifically depends on at some time
annotated property: has associated axiom(nl)
annotated target: If b s-depends_on something at t, then there is some c, which is an independent continuant and not a spatial region, such that b s-depends_on c at t. (axiom label in BFO2 Reference: [136-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/136-001

Axiom
annotated source: specifically depends on at some time
annotated property: has associated axiom(nl)
annotated target: If occurrent b s-depends_on some independent continuant c at t, then b s-depends_on c at every time at which b exists. (axiom label in BFO2 Reference: [015-002])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/015-002

Axiom
annotated source: specifically depends on at some time
annotated property: has associated axiom(nl)
annotated target: an entity does not s-depend_on any of its (continuant or occurrent) parts or on anything it is part of. (axiom label in BFO2 Reference: [013-002])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/013-002

Axiom
annotated source: specifically depends on at some time
annotated property: has associated axiom(nl)
annotated target: if b s-depends_on c at t & c s-depends_on d at t then b s-depends_on d at t. (axiom label in BFO2 Reference: [054-002])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/054-002

Axiom
annotated source: specifically depends on at some time
annotated property: has associated axiom(fol)
annotated target: (forall (x y t) (if (and (Entity x) (or (continuantPartOfAt y x t) (continuantPartOfAt x y t) (occurrentPartOf x y) (occurrentPartOf y x))) (not (specificallyDependsOnAt x y t)))) // axiom label in BFO2 CLIF: [013-002]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/013-002

Axiom
annotated source: specifically depends on at some time
annotated property: has associated axiom(fol)
annotated target: (forall (x y t) (if (and (Occurrent x) (IndependentContinuant y) (specificallyDependsOnAt x y t)) (forall (t_1) (if (existsAt x t_1) (specificallyDependsOnAt x y t_1))))) // axiom label in BFO2 CLIF: [015-002]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/015-002

Axiom
annotated source: specifically depends on at some time
annotated property: has associated axiom(fol)
annotated target: (forall (x y t) (if (specificallyDependsOnAt x y t) (exists (z) (and (IndependentContinuant z) (not (SpatialRegion z)) (specificallyDependsOnAt x z t))))) // axiom label in BFO2 CLIF: [136-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/136-001

Axiom
annotated source: specifically depends on at some time
annotated property: has associated axiom(fol)
annotated target: (forall (x y z t) (if (and (specificallyDependsOnAt x y t) (specificallyDependsOnAt y z t)) (specificallyDependsOnAt x z t))) // axiom label in BFO2 CLIF: [054-002]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/054-002

Axiom
annotated source: specifically depends on at some time
annotated property: has associated axiom(fol)
annotated target: (forall (x) (if (exists (y t) (specificallyDependsOnAt x y t)) (not (MaterialEntity x)))) // axiom label in BFO2 CLIF: [052-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/052-001

located in at some time
type: ObjectProperty
domain: independent continuant
range: independent continuant
BFO OWL specification label: located-in_st
BFO CLIF specification label: locatedInAt
example of usage: Mary located_in Salzburg
example of usage: the Empire State Building located_in New York.
example of usage: this portion of cocaine located_in this portion of blood
example of usage: this stem cell located_in this portion of bone marrow
example of usage: your arm located_in your body
definition: b located_in c at t = Def. b and c are independent continuants, and the region at which b is located at t is a (proper or improper) continuant_part_of the region at which c is located at t. (axiom label in BFO2 Reference: [045-001])
editor note: Alan Ruttenberg: This is a binary version of a ternary time-indexed, instance level, relation. The BFO reading of the binary relation 'located in at some time@en' is: exists t, exists_at(x,t) & exists_at(y,t) & 'located in@en'(x,y,t)
editor note: BFO2 Reference: independent continuant
has associated axiom(nl): Located_in is transitive. (axiom label in BFO2 Reference: [046-001])
has associated axiom(nl): for all independent continuants b, c, and d: if b continuant_part_of c at t & c located_in d at t, then b located_in d at t. (axiom label in BFO2 Reference: [048-001])
has associated axiom(nl): for all independent continuants b, c, and d: if b located_in c at t & c continuant_part_of d at t, then b located_in d at t. (axiom label in BFO2 Reference: [049-001])
has associated axiom(fol): (forall (x y z t) (if (and (IndependentContinuant x) (IndependentContinuant y) (IndependentContinuant z) (continuantPartOfAt x y t) (locatedInAt y z t)) (locatedInAt x z t))) // axiom label in BFO2 CLIF: [048-001]
has associated axiom(fol): (forall (x y z t) (if (and (IndependentContinuant x) (IndependentContinuant y) (IndependentContinuant z) (locatedInAt x y t) (continuantPartOfAt y z t)) (locatedInAt x z t))) // axiom label in BFO2 CLIF: [049-001]
has associated axiom(fol): (forall (x y z t) (if (and (locatedInAt x y t) (locatedInAt y z t)) (locatedInAt x z t))) // axiom label in BFO2 CLIF: [046-001]
has associated axiom(fol): (iff (locatedInAt a b t) (and (IndependentContinuant a) (IndependentContinuant b) (exists (r_1 r_2) (and (occupiesSpatialRegionAt a r_1 t) (occupiesSpatialRegionAt b r_2 t) (continuantPartOfAt r_1 r_2 t))))) // axiom label in BFO2 CLIF: [045-001]

Axiom
annotated source: located in at some time
annotated property: definition
annotated target: b located_in c at t = Def. b and c are independent continuants, and the region at which b is located at t is a (proper or improper) continuant_part_of the region at which c is located at t. (axiom label in BFO2 Reference: [045-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/045-001

Axiom
annotated source: located in at some time
annotated property: has associated axiom(nl)
annotated target: Located_in is transitive. (axiom label in BFO2 Reference: [046-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/046-001

Axiom
annotated source: located in at some time
annotated property: has associated axiom(nl)
annotated target: for all independent continuants b, c, and d: if b continuant_part_of c at t & c located_in d at t, then b located_in d at t. (axiom label in BFO2 Reference: [048-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/048-001

Axiom
annotated source: located in at some time
annotated property: has associated axiom(nl)
annotated target: for all independent continuants b, c, and d: if b located_in c at t & c continuant_part_of d at t, then b located_in d at t. (axiom label in BFO2 Reference: [049-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/049-001

Axiom
annotated source: located in at some time
annotated property: has associated axiom(fol)
annotated target: (forall (x y z t) (if (and (IndependentContinuant x) (IndependentContinuant y) (IndependentContinuant z) (continuantPartOfAt x y t) (locatedInAt y z t)) (locatedInAt x z t))) // axiom label in BFO2 CLIF: [048-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/048-001

Axiom
annotated source: located in at some time
annotated property: has associated axiom(fol)
annotated target: (forall (x y z t) (if (and (IndependentContinuant x) (IndependentContinuant y) (IndependentContinuant z) (locatedInAt x y t) (continuantPartOfAt y z t)) (locatedInAt x z t))) // axiom label in BFO2 CLIF: [049-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/049-001

Axiom
annotated source: located in at some time
annotated property: has associated axiom(fol)
annotated target: (forall (x y z t) (if (and (locatedInAt x y t) (locatedInAt y z t)) (locatedInAt x z t))) // axiom label in BFO2 CLIF: [046-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/046-001

Axiom
annotated source: located in at some time
annotated property: has associated axiom(fol)
annotated target: (iff (locatedInAt a b t) (and (IndependentContinuant a) (IndependentContinuant b) (exists (r_1 r_2) (and (occupiesSpatialRegionAt a r_1 t) (occupiesSpatialRegionAt b r_2 t) (continuantPartOfAt r_1 r_2 t))))) // axiom label in BFO2 CLIF: [045-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/045-001

member part of at all times
type: ObjectProperty
sub property of: member part of at some time
sub property of: proper part of continuant at all times
sub property of: part of continuant at all times
BFO OWL specification label: member-part-of_at
BFO CLIF specification label: memberPartOfAt
example of usage: each piece in a chess set is a member part of the chess set; each Beatle in the collection called The Beatles is a member part of The Beatles.
example of usage: each tree in a forest is a member_part of the forest
definition: b member_part_of c at t =Def. b is an object & there is at t a mutually exhaustive and pairwise disjoint partition of c into objects x1, …, xn (for some n > 1) with b = xi for some 1 ? i ? n. (axiom label in BFO2 Reference: [026-004])
editor note: Alan Ruttenberg: This is a binary version of a ternary time-indexed, instance-level, relation. The BFO reading of the binary relation 'member part of at all times@en' is: forall(t) exists_at(x,t) -> exists_at(y,t) and 'member part of@en(x,y,t)'.
editor note: BFO2 Reference: object
editor note: BFO2 Reference: object aggregate
has associated axiom(nl): if b member_part_of c at t then b continuant_part_of c at t. (axiom label in BFO2 Reference: [104-001])
has associated axiom(fol): (forall (x y t) (if (memberPartOfAt x y t) (continuantPartOfAt x y t))) // axiom label in BFO2 CLIF: [104-001]

Axiom
annotated source: member part of at all times
annotated property: definition
annotated target: b member_part_of c at t =Def. b is an object & there is at t a mutually exhaustive and pairwise disjoint partition of c into objects x1, …, xn (for some n > 1) with b = xi for some 1 ? i ? n. (axiom label in BFO2 Reference: [026-004])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/026-004

Axiom
annotated source: member part of at all times
annotated property: has associated axiom(nl)
annotated target: if b member_part_of c at t then b continuant_part_of c at t. (axiom label in BFO2 Reference: [104-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/104-001

Axiom
annotated source: member part of at all times
annotated property: has associated axiom(fol)
annotated target: (forall (x y t) (if (memberPartOfAt x y t) (continuantPartOfAt x y t))) // axiom label in BFO2 CLIF: [104-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/104-001

proper part of continuant at some time
type: ObjectProperty
sub property of: part of continuant at some time
domain: continuant
range: continuant
BFO OWL specification label: c-ppart-of_st
BFO CLIF specification label: properContinuantPartOfAt
definition: [copied from inverse property 'has proper continuant part at some time'] b has_proper_continuant_part c at t = Def. c proper_continuant_part_of b at t. [XXX-001
definition: b proper_continuant_part_of c at t =Def. b continuant_part_of c at t & b and c are not identical. (axiom label in BFO2 Reference: [004-001])
editor note: Alan Ruttenberg: This is a binary version of a ternary time-indexed, instance level, relation. The BFO reading of the binary relation 'proper part of continuant at some time@en' is: exists t, exists_at(x,t) & exists_at(y,t) & 'proper part of continuant@en'(x,y,t)
editor note: [copied from inverse property 'has proper continuant part at some time'] Alan Ruttenberg: This is a binary version of a ternary time-indexed, instance level, relation. The BFO reading of the binary relation 'has proper continuant part at some time@en' is: exists t, exists_at(x,t) & exists_at(y,t) & 'has proper continuant part@en'(x,y,t)
has associated axiom(fol): (iff (properContinuantPartOfAt a b t) (and (continuantPartOfAt a b t) (not (= a b)))) // axiom label in BFO2 CLIF: [004-001]

Axiom
annotated source: proper part of continuant at some time
annotated property: definition
annotated target: b proper_continuant_part_of c at t =Def. b continuant_part_of c at t & b and c are not identical. (axiom label in BFO2 Reference: [004-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/004-001

Axiom
annotated source: proper part of continuant at some time
annotated property: has associated axiom(fol)
annotated target: (iff (properContinuantPartOfAt a b t) (and (continuantPartOfAt a b t) (not (= a b)))) // axiom label in BFO2 CLIF: [004-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/004-001

part of continuant at some time
type: ObjectProperty
domain: continuant
range: continuant
BFO OWL specification label: c-part-of_st
BFO CLIF specification label: continuantPartOfAt
example of usage: Mary’s arm continuant_part_of Mary in the time of her life prior to her operation
example of usage: the Northern hemisphere of the planet Earth is a part of the planet Earth at all times at which the planet Earth exists.
definition: [copied from inverse property 'has continuant part at some time'] b has_continuant_part c at t = Def. c continuant_part_of b at t. (axiom label in BFO2 Reference: [006-001])
editor note: Alan Ruttenberg: This is a binary version of a ternary time-indexed, instance level, relation. The BFO reading of the binary relation 'part of continuant at some time@en' is: exists t, exists_at(x,t) & exists_at(y,t) & 'part of continuant@en'(x,y,t)
editor note: BFO 2 Reference: Immaterial entities are in some cases continuant parts of their material hosts. Thus the hold of a ship, for example, is a part of the ship; it may itself have parts, which may have names (used for example by ship stow planners, customs inspectors, and the like). Immaterial entities under both 1. and 2. can be of zero, one, two or three dimensions. We define:a(immaterial entity)[Definition: a is an immaterial entity = Def. a is an independent continuant that has no material entities as parts. (axiom label in BFO2 Reference: [028-001])
editor note: BFO 2 Reference: a (continuant or occurrent) part of itself. We appreciate that this is counterintuitive for some users, since it implies for example that President Obama is a part of himself. However it brings benefits in simplifying the logical formalism, and it captures an important feature of identity, namely that it is the limit case of mereological inclusion.
editor note: BFO2 Reference: continuant
editor note: BFO2 Reference: continuantThe range for ‘t’ (as in all cases throughout this document unless otherwise specified) is: temporal region.
editor note: [copied from inverse property 'has continuant part at some time'] Alan Ruttenberg: This is a binary version of a ternary time-indexed, instance level, relation. The BFO reading of the binary relation 'has continuant part at some time@en' is: exists t, exists_at(x,t) & exists_at(y,t) & 'has continuant part@en'(x,y,t)
elucidation: b continuant_part_of c at t =Def. b is a part of c at t & t is a time & b and c are continuants. (axiom label in BFO2 Reference: [002-001])
has associated axiom(nl): continuant_part_of is antisymmetric. (axiom label in BFO2 Reference: [120-001])
has associated axiom(nl): continuant_part_of is reflexive (every continuant entity is a continuant_part_of itself). (axiom label in BFO2 Reference: [111-002])
has associated axiom(nl): continuant_part_of is transitive. (axiom label in BFO2 Reference: [110-001])
has associated axiom(nl): continuant_part_of satisfies unique product. (axiom label in BFO2 Reference: [122-001])
has associated axiom(nl): continuant_part_of satisfies weak supplementation. (axiom label in BFO2 Reference: [121-001])
has associated axiom(nl): if b continuant_part_of c at t and b is an independent continuant, then b is located_in c at t. (axiom label in BFO2 Reference: [047-002])
has associated axiom(fol): (forall (x t) (if (Continuant x) (continuantPartOfAt x x t))) // axiom label in BFO2 CLIF: [111-002]
has associated axiom(fol): (forall (x y t) (if (and (continuantPartOfAt x y t) (IndependentContinuant x)) (locatedInAt x y t))) // axiom label in BFO2 CLIF: [047-002]
has associated axiom(fol): (forall (x y t) (if (and (continuantPartOfAt x y t) (continuantPartOfAt y x t)) (= x y))) // axiom label in BFO2 CLIF: [120-001]
has associated axiom(fol): (forall (x y t) (if (and (continuantPartOfAt x y t) (not (= x y))) (exists (z) (and (continuantPartOfAt z y t) (not (exists (w) (and (continuantPartOfAt w x t) (continuantPartOfAt w z t)))))))) // axiom label in BFO2 CLIF: [121-001]
has associated axiom(fol): (forall (x y t) (if (exists (v) (and (continuantPartOfAt v x t) (continuantPartOfAt v y t))) (exists (z) (forall (u w) (iff (iff (continuantPartOfAt w u t) (and (continuantPartOfAt w x t) (continuantPartOfAt w y t))) (= z u)))))) // axiom label in BFO2 CLIF: [122-001]
has associated axiom(fol): (forall (x y z t) (if (and (continuantPartOfAt x y t) (continuantPartOfAt y z t)) (continuantPartOfAt x z t))) // axiom label in BFO2 CLIF: [110-001]
has associated axiom(fol): (iff (ImmaterialEntity a) (and (IndependentContinuant a) (not (exists (b t) (and (MaterialEntity b) (continuantPartOfAt b a t)))))) // axiom label in BFO2 CLIF: [028-001]

Axiom
annotated source: part of continuant at some time
annotated property: editor note
annotated target: BFO 2 Reference: Immaterial entities are in some cases continuant parts of their material hosts. Thus the hold of a ship, for example, is a part of the ship; it may itself have parts, which may have names (used for example by ship stow planners, customs inspectors, and the like). Immaterial entities under both 1. and 2. can be of zero, one, two or three dimensions. We define:a(immaterial entity)[Definition: a is an immaterial entity = Def. a is an independent continuant that has no material entities as parts. (axiom label in BFO2 Reference: [028-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/028-001

Axiom
annotated source: part of continuant at some time
annotated property: elucidation
annotated target: b continuant_part_of c at t =Def. b is a part of c at t & t is a time & b and c are continuants. (axiom label in BFO2 Reference: [002-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/002-001

Axiom
annotated source: part of continuant at some time
annotated property: has associated axiom(nl)
annotated target: continuant_part_of is antisymmetric. (axiom label in BFO2 Reference: [120-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/120-001

Axiom
annotated source: part of continuant at some time
annotated property: has associated axiom(nl)
annotated target: continuant_part_of is reflexive (every continuant entity is a continuant_part_of itself). (axiom label in BFO2 Reference: [111-002])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/111-002

Axiom
annotated source: part of continuant at some time
annotated property: has associated axiom(nl)
annotated target: continuant_part_of is transitive. (axiom label in BFO2 Reference: [110-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/110-001

Axiom
annotated source: part of continuant at some time
annotated property: has associated axiom(nl)
annotated target: continuant_part_of satisfies unique product. (axiom label in BFO2 Reference: [122-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/122-001

Axiom
annotated source: part of continuant at some time
annotated property: has associated axiom(nl)
annotated target: continuant_part_of satisfies weak supplementation. (axiom label in BFO2 Reference: [121-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/121-001

Axiom
annotated source: part of continuant at some time
annotated property: has associated axiom(nl)
annotated target: if b continuant_part_of c at t and b is an independent continuant, then b is located_in c at t. (axiom label in BFO2 Reference: [047-002])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/047-002

Axiom
annotated source: part of continuant at some time
annotated property: has associated axiom(fol)
annotated target: (forall (x t) (if (Continuant x) (continuantPartOfAt x x t))) // axiom label in BFO2 CLIF: [111-002]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/111-002

Axiom
annotated source: part of continuant at some time
annotated property: has associated axiom(fol)
annotated target: (forall (x y t) (if (and (continuantPartOfAt x y t) (IndependentContinuant x)) (locatedInAt x y t))) // axiom label in BFO2 CLIF: [047-002]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/047-002

Axiom
annotated source: part of continuant at some time
annotated property: has associated axiom(fol)
annotated target: (forall (x y t) (if (and (continuantPartOfAt x y t) (continuantPartOfAt y x t)) (= x y))) // axiom label in BFO2 CLIF: [120-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/120-001

Axiom
annotated source: part of continuant at some time
annotated property: has associated axiom(fol)
annotated target: (forall (x y t) (if (and (continuantPartOfAt x y t) (not (= x y))) (exists (z) (and (continuantPartOfAt z y t) (not (exists (w) (and (continuantPartOfAt w x t) (continuantPartOfAt w z t)))))))) // axiom label in BFO2 CLIF: [121-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/121-001

Axiom
annotated source: part of continuant at some time
annotated property: has associated axiom(fol)
annotated target: (forall (x y t) (if (exists (v) (and (continuantPartOfAt v x t) (continuantPartOfAt v y t))) (exists (z) (forall (u w) (iff (iff (continuantPartOfAt w u t) (and (continuantPartOfAt w x t) (continuantPartOfAt w y t))) (= z u)))))) // axiom label in BFO2 CLIF: [122-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/122-001

Axiom
annotated source: part of continuant at some time
annotated property: has associated axiom(fol)
annotated target: (forall (x y z t) (if (and (continuantPartOfAt x y t) (continuantPartOfAt y z t)) (continuantPartOfAt x z t))) // axiom label in BFO2 CLIF: [110-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/110-001

Axiom
annotated source: part of continuant at some time
annotated property: has associated axiom(fol)
annotated target: (iff (ImmaterialEntity a) (and (IndependentContinuant a) (not (exists (b t) (and (MaterialEntity b) (continuantPartOfAt b a t)))))) // axiom label in BFO2 CLIF: [028-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/028-001

part of continuant at all times
type: ObjectProperty
sub property of: part of continuant at some time
type: TransitiveProperty
BFO OWL specification label: c-part-of_at
BFO CLIF specification label: continuantPartOfAt
example of usage: Mary’s arm continuant_part_of Mary in the time of her life prior to her operation
example of usage: the Northern hemisphere of the planet Earth is a part of the planet Earth at all times at which the planet Earth exists.
definition: [copied from inverse property 'has continuant part at all times that part exists'] forall(t) exists_at(y,t) -> exists_at(x,t) and 'has continuant part'(x,y,t)
editor note: Alan Ruttenberg: This is a binary version of a ternary time-indexed, instance-level, relation. The BFO reading of the binary relation 'part of continuant at all times@en' is: forall(t) exists_at(x,t) -> exists_at(y,t) and 'part of continuant@en(x,y,t)'.
editor note: BFO 2 Reference: Immaterial entities are in some cases continuant parts of their material hosts. Thus the hold of a ship, for example, is a part of the ship; it may itself have parts, which may have names (used for example by ship stow planners, customs inspectors, and the like). Immaterial entities under both 1. and 2. can be of zero, one, two or three dimensions. We define:a(immaterial entity)[Definition: a is an immaterial entity = Def. a is an independent continuant that has no material entities as parts. (axiom label in BFO2 Reference: [028-001])
editor note: BFO 2 Reference: a (continuant or occurrent) part of itself. We appreciate that this is counterintuitive for some users, since it implies for example that President Obama is a part of himself. However it brings benefits in simplifying the logical formalism, and it captures an important feature of identity, namely that it is the limit case of mereological inclusion.
editor note: BFO2 Reference: continuant
editor note: BFO2 Reference: continuantThe range for ‘t’ (as in all cases throughout this document unless otherwise specified) is: temporal region.
editor note: [copied from inverse property 'has continuant part at all times that part exists'] This is a binary version of a ternary time-indexed, instance level, relation. Unlike the rest of the temporalized relations which temporally quantify over existence of the subject of the relation, this relation temporally quantifies over the existence of the object of the relation. The relation is provided tentatively, to assess whether the GO needs such a relation. It is inverse of 'part of continuant at all times'
elucidation: b continuant_part_of c at t =Def. b is a part of c at t & t is a time & b and c are continuants. (axiom label in BFO2 Reference: [002-001])
has associated axiom(nl): continuant_part_of is antisymmetric. (axiom label in BFO2 Reference: [120-001])
has associated axiom(nl): continuant_part_of is reflexive (every continuant entity is a continuant_part_of itself). (axiom label in BFO2 Reference: [111-002])
has associated axiom(nl): continuant_part_of is transitive. (axiom label in BFO2 Reference: [110-001])
has associated axiom(nl): continuant_part_of satisfies unique product. (axiom label in BFO2 Reference: [122-001])
has associated axiom(nl): continuant_part_of satisfies weak supplementation. (axiom label in BFO2 Reference: [121-001])
has associated axiom(nl): if b continuant_part_of c at t and b is an independent continuant, then b is located_in c at t. (axiom label in BFO2 Reference: [047-002])
has associated axiom(fol): (forall (x t) (if (Continuant x) (continuantPartOfAt x x t))) // axiom label in BFO2 CLIF: [111-002]
has associated axiom(fol): (forall (x y t) (if (and (continuantPartOfAt x y t) (IndependentContinuant x)) (locatedInAt x y t))) // axiom label in BFO2 CLIF: [047-002]
has associated axiom(fol): (forall (x y t) (if (and (continuantPartOfAt x y t) (continuantPartOfAt y x t)) (= x y))) // axiom label in BFO2 CLIF: [120-001]
has associated axiom(fol): (forall (x y t) (if (and (continuantPartOfAt x y t) (not (= x y))) (exists (z) (and (continuantPartOfAt z y t) (not (exists (w) (and (continuantPartOfAt w x t) (continuantPartOfAt w z t)))))))) // axiom label in BFO2 CLIF: [121-001]
has associated axiom(fol): (forall (x y t) (if (exists (v) (and (continuantPartOfAt v x t) (continuantPartOfAt v y t))) (exists (z) (forall (u w) (iff (iff (continuantPartOfAt w u t) (and (continuantPartOfAt w x t) (continuantPartOfAt w y t))) (= z u)))))) // axiom label in BFO2 CLIF: [122-001]
has associated axiom(fol): (forall (x y z t) (if (and (continuantPartOfAt x y t) (continuantPartOfAt y z t)) (continuantPartOfAt x z t))) // axiom label in BFO2 CLIF: [110-001]
has associated axiom(fol): (iff (ImmaterialEntity a) (and (IndependentContinuant a) (not (exists (b t) (and (MaterialEntity b) (continuantPartOfAt b a t)))))) // axiom label in BFO2 CLIF: [028-001]

Axiom
annotated source: part of continuant at all times
annotated property: editor note
annotated target: BFO 2 Reference: Immaterial entities are in some cases continuant parts of their material hosts. Thus the hold of a ship, for example, is a part of the ship; it may itself have parts, which may have names (used for example by ship stow planners, customs inspectors, and the like). Immaterial entities under both 1. and 2. can be of zero, one, two or three dimensions. We define:a(immaterial entity)[Definition: a is an immaterial entity = Def. a is an independent continuant that has no material entities as parts. (axiom label in BFO2 Reference: [028-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/028-001

Axiom
annotated source: part of continuant at all times
annotated property: elucidation
annotated target: b continuant_part_of c at t =Def. b is a part of c at t & t is a time & b and c are continuants. (axiom label in BFO2 Reference: [002-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/002-001

Axiom
annotated source: part of continuant at all times
annotated property: has associated axiom(nl)
annotated target: continuant_part_of is antisymmetric. (axiom label in BFO2 Reference: [120-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/120-001

Axiom
annotated source: part of continuant at all times
annotated property: has associated axiom(nl)
annotated target: continuant_part_of is reflexive (every continuant entity is a continuant_part_of itself). (axiom label in BFO2 Reference: [111-002])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/111-002

Axiom
annotated source: part of continuant at all times
annotated property: has associated axiom(nl)
annotated target: continuant_part_of is transitive. (axiom label in BFO2 Reference: [110-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/110-001

Axiom
annotated source: part of continuant at all times
annotated property: has associated axiom(nl)
annotated target: continuant_part_of satisfies unique product. (axiom label in BFO2 Reference: [122-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/122-001

Axiom
annotated source: part of continuant at all times
annotated property: has associated axiom(nl)
annotated target: continuant_part_of satisfies weak supplementation. (axiom label in BFO2 Reference: [121-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/121-001

Axiom
annotated source: part of continuant at all times
annotated property: has associated axiom(nl)
annotated target: if b continuant_part_of c at t and b is an independent continuant, then b is located_in c at t. (axiom label in BFO2 Reference: [047-002])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/047-002

Axiom
annotated source: part of continuant at all times
annotated property: has associated axiom(fol)
annotated target: (forall (x t) (if (Continuant x) (continuantPartOfAt x x t))) // axiom label in BFO2 CLIF: [111-002]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/111-002

Axiom
annotated source: part of continuant at all times
annotated property: has associated axiom(fol)
annotated target: (forall (x y t) (if (and (continuantPartOfAt x y t) (IndependentContinuant x)) (locatedInAt x y t))) // axiom label in BFO2 CLIF: [047-002]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/047-002

Axiom
annotated source: part of continuant at all times
annotated property: has associated axiom(fol)
annotated target: (forall (x y t) (if (and (continuantPartOfAt x y t) (continuantPartOfAt y x t)) (= x y))) // axiom label in BFO2 CLIF: [120-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/120-001

Axiom
annotated source: part of continuant at all times
annotated property: has associated axiom(fol)
annotated target: (forall (x y t) (if (and (continuantPartOfAt x y t) (not (= x y))) (exists (z) (and (continuantPartOfAt z y t) (not (exists (w) (and (continuantPartOfAt w x t) (continuantPartOfAt w z t)))))))) // axiom label in BFO2 CLIF: [121-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/121-001

Axiom
annotated source: part of continuant at all times
annotated property: has associated axiom(fol)
annotated target: (forall (x y t) (if (exists (v) (and (continuantPartOfAt v x t) (continuantPartOfAt v y t))) (exists (z) (forall (u w) (iff (iff (continuantPartOfAt w u t) (and (continuantPartOfAt w x t) (continuantPartOfAt w y t))) (= z u)))))) // axiom label in BFO2 CLIF: [122-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/122-001

Axiom
annotated source: part of continuant at all times
annotated property: has associated axiom(fol)
annotated target: (forall (x y z t) (if (and (continuantPartOfAt x y t) (continuantPartOfAt y z t)) (continuantPartOfAt x z t))) // axiom label in BFO2 CLIF: [110-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/110-001

Axiom
annotated source: part of continuant at all times
annotated property: has associated axiom(fol)
annotated target: (iff (ImmaterialEntity a) (and (IndependentContinuant a) (not (exists (b t) (and (MaterialEntity b) (continuantPartOfAt b a t)))))) // axiom label in BFO2 CLIF: [028-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/028-001

has proper temporal part
type: ObjectProperty
sub property of: has proper occurrent part
sub property of: has temporal part
type: TransitiveProperty
domain: occurrent
range: occurrent
BFO OWL specification label: has-t-ppart

history of
type: ObjectProperty
sub property of: occurs in
sub property of: specifically depends on at all times
inverse of: has history
type: FunctionalProperty
type: InverseFunctionalProperty
domain: process
range: material entity
BFO OWL specification label: history-of
BFO CLIF specification label: historyOf
definition: [copied from inverse property 'has history'] b has_history c iff c history_of b [XXX-001
elucidation: b history_of c if c is a material entity or site and b is a history that is the unique history of cAxiom: if b history_of c and b history_of d then c=d [XXX-001

has history
type: ObjectProperty
sub property of: contains process
sub property of: participates in at all times
type: FunctionalProperty
type: InverseFunctionalProperty
domain: material entity
range: process
BFO OWL specification label: has-history
BFO CLIF specification label: hasHistory
definition: b has_history c iff c history_of b [XXX-001
elucidation: [copied from inverse property 'history of'] b history_of c if c is a material entity or site and b is a history that is the unique history of cAxiom: if b history_of c and b history_of d then c=d [XXX-001

part of continuant at all times that whole exists
type: ObjectProperty
sub property of: part of continuant at some time
type: TransitiveProperty
domain: continuant
range: continuant
BFO OWL specification label: c-part-of-object_at
definition: [copied from inverse property 'has continuant part at all times'] b has_continuant_part c at t = Def. c continuant_part_of b at t. (axiom label in BFO2 Reference: [006-001])
definition: forall(t) exists_at(y,t) -> exists_at(x,t) and 'part of continuant'(x,y,t)
editor note: This is a binary version of a ternary time-indexed, instance level, relation. Unlike the rest of the temporalized relations which temporally quantify over existence of the subject of the relation, this relation temporally quantifies over the existence of the object of the relation. The relation is provided tentatively, to assess whether the GO needs such a relation. It is inverse of 'has continuant part at all times'
editor note: [copied from inverse property 'has continuant part at all times'] Alan Ruttenberg: This is a binary version of a ternary time-indexed, instance-level, relation. The BFO reading of the binary relation 'has continuant part at all times@en' is: forall(t) exists_at(x,t) -> exists_at(y,t) and 'has continuant part@en(x,y,t)'.

Axiom
annotated source: part of continuant at all times that whole exists
annotated property: definition
annotated target: forall(t) exists_at(y,t) -> exists_at(x,t) and 'part of continuant'(x,y,t)
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/0000598

Axiom
annotated source: part of continuant at all times that whole exists
annotated property: editor note
annotated target: This is a binary version of a ternary time-indexed, instance level, relation. Unlike the rest of the temporalized relations which temporally quantify over existence of the subject of the relation, this relation temporally quantifies over the existence of the object of the relation. The relation is provided tentatively, to assess whether the GO needs such a relation. It is inverse of 'has continuant part at all times'
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/0000599

anterior_to
type: ObjectProperty
type: TransitiveProperty
definition: x anterior_to y iff x is further along the antero-posterior axis than y, towards the head. An antero-posterior axis is an axis that bisects an organism from head end to opposite end of body or tail: bearer
created_by: cjm
creation_date: 2009-07-31T02:15:46Z
数据库_交叉_引用: BSPO:0000096
有_obo_命名空间: uberon
id: anterior_to
shorthand: anterior_to

Axiom
annotated source: anterior_to
annotated property: definition
annotated target: x anterior_to y iff x is further along the antero-posterior axis than y, towards the head. An antero-posterior axis is an axis that bisects an organism from head end to opposite end of body or tail: bearer
数据库_交叉_引用: http://orcid.org/0000-0002-6601-2165

distal_to
type: ObjectProperty
definition: x distal_to y iff x is further along the proximo-distal axis than y, towards the appendage tip. A proximo-distal axis extends from tip of an appendage (distal) to where it joins the body (proximal).
数据库_交叉_引用: BSPO:0000097
有_obo_命名空间: uberon
id: distal_to
shorthand: distal_to

Axiom
annotated source: distal_to
annotated property: definition
annotated target: x distal_to y iff x is further along the proximo-distal axis than y, towards the appendage tip. A proximo-distal axis extends from tip of an appendage (distal) to where it joins the body (proximal).
数据库_交叉_引用: http://orcid.org/0000-0002-6601-2165

dorsal_to
type: ObjectProperty
inverse of: ventral_to
type: TransitiveProperty
definition: x dorsal_to y iff x is further along the dorso-ventral axis than y, towards the back. A dorso-ventral axis is an axis that bisects an organism from back (e.g. spinal column) to front (e.g. belly).
数据库_交叉_引用: BSPO:0000098
有_obo_命名空间: uberon
id: dorsal_to
shorthand: dorsal_to

Axiom
annotated source: dorsal_to
annotated property: definition
annotated target: x dorsal_to y iff x is further along the dorso-ventral axis than y, towards the back. A dorso-ventral axis is an axis that bisects an organism from back (e.g. spinal column) to front (e.g. belly).
数据库_交叉_引用: http://orcid.org/0000-0002-6601-2165

posterior_to
type: ObjectProperty
type: TransitiveProperty
definition: x posterior_to y iff x is further along the antero-posterior axis than y, towards the body/tail. An antero-posterior axis is an axis that bisects an organism from head end to opposite end of body or tail.
数据库_交叉_引用: BSPO:0000099
has_narrow_synonym: caudal_to
有_obo_命名空间: uberon
id: posterior_to
shorthand: posterior_to

Axiom
annotated source: posterior_to
annotated property: definition
annotated target: x posterior_to y iff x is further along the antero-posterior axis than y, towards the body/tail. An antero-posterior axis is an axis that bisects an organism from head end to opposite end of body or tail.
数据库_交叉_引用: http://orcid.org/0000-0002-6601-2165

proximal_to
type: ObjectProperty
definition: x proximal_to y iff x is closer to the point of attachment with the body than y.
数据库_交叉_引用: BSPO:0000100
有_obo_命名空间: uberon
id: proximal_to
shorthand: proximal_to

Axiom
annotated source: proximal_to
annotated property: definition
annotated target: x proximal_to y iff x is closer to the point of attachment with the body than y.
数据库_交叉_引用: http://orcid.org/0000-0002-6601-2165

ventral_to
type: ObjectProperty
type: TransitiveProperty
definition: x ventral_to y iff x is further along the dorso-ventral axis than y, towards the front. A dorso-ventral axis is an axis that bisects an organism from back (e.g. spinal column) to front (e.g. belly).
数据库_交叉_引用: BSPO:0000102
有_obo_命名空间: uberon
id: ventral_to
shorthand: ventral_to

Axiom
annotated source: ventral_to
annotated property: definition
annotated target: x ventral_to y iff x is further along the dorso-ventral axis than y, towards the front. A dorso-ventral axis is an axis that bisects an organism from back (e.g. spinal column) to front (e.g. belly).
数据库_交叉_引用: http://orcid.org/0000-0002-6601-2165

deep_to
type: ObjectProperty
type: TransitiveProperty
definition: Further away from the surface of the organism. Thus, the muscular layer is deep to the skin, but superficial to the intestines.
数据库_交叉_引用: BSPO:0000107
有_obo_命名空间: uberon
id: deep_to
shorthand: deep_to

Axiom
annotated source: deep_to
annotated property: definition
annotated target: Further away from the surface of the organism. Thus, the muscular layer is deep to the skin, but superficial to the intestines.
数据库_交叉_引用: http://orcid.org/0000-0002-6601-2165

superficial_to
type: ObjectProperty
definition: Near the outer surface of the organism. Thus, skin is superficial to the muscle layer.
数据库_交叉_引用: BSPO:0000108
有_obo_命名空间: uberon
id: superficial_to
shorthand: superficial_to

Axiom
annotated source: superficial_to
annotated property: definition
annotated target: Near the outer surface of the organism. Thus, skin is superficial to the muscle layer.
数据库_交叉_引用: http://orcid.org/0000-0002-6601-2165

in_left_side_of
type: ObjectProperty
sub property of: in_lateral_side_of
definition: X in_left_side_of Y <=> if Y is subdivided into left and right portions, X is part_of the left portion.
数据库_交叉_引用: BSPO:0000120
有_obo_命名空间: uberon
id: in_left_side_of
shorthand: in_left_side_of

Axiom
annotated source: in_left_side_of
annotated property: definition
annotated target: X in_left_side_of Y <=> if Y is subdivided into left and right portions, X is part_of the left portion.
数据库_交叉_引用: BSPO:PATO_mtg_2009

in_right_side_of
type: ObjectProperty
sub property of: in_lateral_side_of
definition: X in_right_side_of Y <=> if Y is subdivided into left and right portions, X is part_of the right portion.
数据库_交叉_引用: BSPO:0000121
有_obo_命名空间: uberon
id: in_right_side_of
shorthand: in_right_side_of

Axiom
annotated source: in_right_side_of
annotated property: definition
annotated target: X in_right_side_of Y <=> if Y is subdivided into left and right portions, X is part_of the right portion.
数据库_交叉_引用: BSPO:PATO_mtg_2009

in_posterior_side_of
type: ObjectProperty
sub property of: part of
definition: X posterior_side_of Y <=> if Y is subdivided into two anterior and posterior portions, X is part_of the posterior portion.
数据库_交叉_引用: BSPO:0000122
有_obo_命名空间: uberon
id: in_posterior_side_of
shorthand: in_posterior_side_of

Axiom
annotated source: in_posterior_side_of
annotated property: definition
annotated target: X posterior_side_of Y <=> if Y is subdivided into two anterior and posterior portions, X is part_of the posterior portion.
数据库_交叉_引用: BSPO:PATO_mtg_2009

in_anterior_side_of
type: ObjectProperty
sub property of: part of
definition: X anterior_side_of Y <=> if Y is subdivided into two anterior and posterior portions, X is part_of the anterior portion.
数据库_交叉_引用: BSPO:0000123
有_obo_命名空间: uberon
id: in_anterior_side_of
shorthand: in_anterior_side_of

Axiom
annotated source: in_anterior_side_of
annotated property: definition
annotated target: X anterior_side_of Y <=> if Y is subdivided into two anterior and posterior portions, X is part_of the anterior portion.
数据库_交叉_引用: BSPO:PATO_mtg_2009

in_proximal_side_of
type: ObjectProperty
sub property of: part of
inverse of: in_distal_side_of
definition: X proximal_side_of Y <=> if Y is subdivided into distal and proximal portions, X is part_of the proximal portion.
数据库_交叉_引用: BSPO:0000124
有_obo_命名空间: uberon
id: in_proximal_side_of
shorthand: in_proximal_side_of

Axiom
annotated source: in_proximal_side_of
annotated property: definition
annotated target: X proximal_side_of Y <=> if Y is subdivided into distal and proximal portions, X is part_of the proximal portion.
数据库_交叉_引用: BSPO:PATO_mtg_2009

in_distal_side_of
type: ObjectProperty
sub property of: part of
definition: X distal_side_of Y <=> if Y is subdivided into distal and proximal portions, X is part_of the distal portion.
数据库_交叉_引用: BSPO:0000125
有_obo_命名空间: uberon
id: in_distal_side_of
shorthand: in_distal_side_of

Axiom
annotated source: in_distal_side_of
annotated property: definition
annotated target: X distal_side_of Y <=> if Y is subdivided into distal and proximal portions, X is part_of the distal portion.
数据库_交叉_引用: BSPO:PATO_mtg_2009

in_lateral_side_of
type: ObjectProperty
sub property of: part of
definition: X in_lateral_side_of Y <=> if X is in_left_side_of Y or X is in_right_side_of Y. X is often, but not always a paired structure
数据库_交叉_引用: BSPO:0000126
有_obo_命名空间: uberon
id: in_lateral_side_of
shorthand: in_lateral_side_of

Axiom
annotated source: in_lateral_side_of
annotated property: definition
annotated target: X in_lateral_side_of Y <=> if X is in_left_side_of Y or X is in_right_side_of Y. X is often, but not always a paired structure
数据库_交叉_引用: https://orcid.org/0000-0002-6601-2165

proximalmost_part_of
type: ObjectProperty
sub property of: in_proximal_side_of
definition: X proximalmost_part_of Y <=> X is part_of Y and X is adjacent_to the proximal boundary of Y
数据库_交叉_引用: BSPO:0001106
有_obo_命名空间: uberon
id: proximalmost_part_of
shorthand: proximalmost_part_of

Axiom
annotated source: proximalmost_part_of
annotated property: definition
annotated target: X proximalmost_part_of Y <=> X is part_of Y and X is adjacent_to the proximal boundary of Y
数据库_交叉_引用: https://orcid.org/0000-0002-6601-2165

immediately_deep_to
type: ObjectProperty
sub property of: deep_to
sub property of: adjacent to
definition: This relation holds when both the deep_to and ajdacent_to relationship similarly hold.
数据库_交叉_引用: BSPO:0001107
有_obo_命名空间: uberon
id: immediately_deep_to
shorthand: immediately_deep_to

Axiom
annotated source: immediately_deep_to
annotated property: definition
annotated target: This relation holds when both the deep_to and ajdacent_to relationship similarly hold.
数据库_交叉_引用: http://orcid.org/0000-0002-6601-2165

distalmost_part_of
type: ObjectProperty
sub property of: in_distal_side_of
definition: X distalmost_part_of Y <=> X is part_of Y and X is adjacent_to the distal boundary of Y
数据库_交叉_引用: BSPO:0001108
有_obo_命名空间: uberon
id: distalmost_part_of
shorthand: distalmost_part_of

Axiom
annotated source: distalmost_part_of
annotated property: definition
annotated target: X distalmost_part_of Y <=> X is part_of Y and X is adjacent_to the distal boundary of Y
数据库_交叉_引用: https://orcid.org/0000-0002-6601-2165

derives from patient having disease
type: ObjectProperty

has disease
type: ObjectProperty

is in cell line repository
type: ObjectProperty

is disease model for
type: ObjectProperty

derived from anatomic part
type: ObjectProperty

is about
type: ObjectProperty
domain: information content entity
example of usage: This document is about information artifacts and their representations
has curation status: IAO_0000125
definition: is_about is a (currently) primitive relation that relates an information artifact to an entity.
editor note: 7/6/2009 Alan Ruttenberg. Following discussion with Jonathan Rees, and introduction of "mentions" relation. Weaken the is_about relationship to be primitive. We will try to build it back up by elaborating the various subproperties that are more precisely defined. Some currently missing phenomena that should be considered "about" are predications - "The only person who knows the answer is sitting beside me" , Allegory, Satire, and other literary forms that can be topical without explicitly mentioning the topic.
definition editor: person:Alan Ruttenberg
definition source: Smith, Ceusters, Ruttenberg, 2000 years of philosophy

denotes
type: ObjectProperty
sub property of: is about
inverse of: denoted by
domain: information content entity
range: entity
example of usage: A person's name denotes the person. A variable name in a computer program denotes some piece of memory. Lexically equivalent strings can denote different things, for instance "Alan" can denote different people. In each case of use, there is a case of the denotation relation obtaining, between "Alan" and the person that is being named.
definition: denotes is a primitive, instance-level, relation obtaining between an information content entity and some portion of reality. Denotation is what happens when someone creates an information content entity E in order to specifically refer to something. The only relation between E and the thing is that E can be used to 'pick out' the thing. This relation connects those two together. Freedictionary.com sense 3: To signify directly; refer to specifically
editor note: 2009-11-10 Alan Ruttenberg. Old definition said the following to emphasize the generic nature of this relation. We no longer have 'specifically denotes', which would have been primitive, so make this relation primitive. g denotes r =def r is a portion of reality there is some c that is a concretization of g every c that is a concretization of g specifically denotes r
definition editor: person:Alan Ruttenberg
definition source: Conversations with Barry Smith, Werner Ceusters, Bjoern Peters, Michel Dumontier, Melanie Courtot, James Malone, Bill Hogan

denoted by
type: ObjectProperty
domain: entity
range: information content entity
definition: inverse of the relation 'denotes'
definition editor: Person: Jie Zheng, Chris Stoeckert, Mike Conlon
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/206

has material basis in
type: ObjectProperty
label: has_material_basis_in

is_specified_input_of
type: ObjectProperty
equivalent property:
  inverse of: has_specified_input
sub property of: participates_in
range: planned process
editor preferred label: is_specified_input_of
example of usage: some Autologous EBV(Epstein-Barr virus)-transformed B-LCL (B lymphocyte cell line) is_input_for instance of Chromum Release Assay described at https://wiki.cbil.upenn.edu/obiwiki/index.php/Chromium_Release_assay
has curation status: IAO_0000122
definition: A relation between a planned process and a continuant participating in that process that is not created during the process. The presence of the continuant during the process is explicitly specified in the plan specification which the process realizes the concretization of.
definition editor: Alan Ruttenberg
definition editor: PERSON:Bjoern Peters

is_specified_output_of
type: ObjectProperty
equivalent property:
  inverse of: has_specified_output
sub property of: participates_in
range: planned process
editor preferred label: is_specified_output_of
has curation status: IAO_0000122
definition: A relation between a planned process and a continuant participating in that process. The presence of the continuant at the end of the process is explicitly specified in the objective specification which the process realizes the concretization of.
definition editor: Alan Ruttenberg
definition editor: PERSON:Bjoern Peters
imported from: obi.owl

achieves_planned_objective
type: ObjectProperty
inverse of: objective_achieved_by
domain: planned process
range: objective specification
editor preferred label: achieves_planned_objective
example of usage: A cell sorting process achieves the objective specification 'material separation objective'
has curation status: IAO_0000120
definition: This relation obtains between a planned process and a objective specification when the criteria specified in the objective specification are met at the end of the planned process.
definition editor: BP, AR, PPPB branch
definition source: PPPB branch derived
curator note: modified according to email thread from 1/23/09 in accordince with DT and PPPB branch

has grain
type: ObjectProperty
sub property of: has_part
editor preferred label: has grain
has curation status: IAO_0000120
definition: the relation of the cells in the finger of the skin to the finger, in which an indeterminate number of grains are parts of the whole by virtue of being grains in a collective that is part of the whole, and in which removing one granular part does not nec- essarily damage or diminish the whole. Ontological Whether there is a fixed, or nearly fixed number of parts - e.g. fingers of the hand, chambers of the heart, or wheels of a car - such that there can be a notion of a single one being missing, or whether, by contrast, the number of parts is indeterminate - e.g., cells in the skin of the hand, red cells in blood, or rubber molecules in the tread of the tire of the wheel of the car.
editor note: Discussion in Karslruhe with, among others, Alan Rector, Stefan Schulz, Marijke Keet, Melanie Courtot, and Alan Ruttenberg. Definition take from the definition of granular parthood in the cited paper. Needs work to put into standard form
definition editor: PERSON: Alan Ruttenberg
definition source: PAPER: Granularity, scale and collectivity: When size does and does not matter, Alan Rector, Jeremy Rogers, Thomas Bittner, Journal of Biomedical Informatics 39 (2006) 333-349

objective_achieved_by
type: ObjectProperty
domain: objective specification
range: planned process
editor preferred label: objective_achieved_by
has curation status: IAO_0000122
definition: This relation obtains between an objective specification and a planned process when the criteria specified in the objective specification are met at the end of the planned process.
definition editor: OBI
definition source: OBI

is genome of organism
type: ObjectProperty
sub property of: part of continuant at some time
definition: a 'part of continuant at some time' relation that incides a genome belongs to a organism.
definition editor: Yongqun He, Bin Zhao

is gene of organism
type: ObjectProperty
sub property of: part of continuant at some time
domain: gene
range: organism
definition: a relation between a gene and the organism where this gene belongs to the organism in nature. It does not include a foreign gene that is transferred to an organism by a genetic engineering method.
definition editor: Oliver He, Yue Liu

gene mutant attenuated in host organism
type: ObjectProperty
sub property of: gene mutant attenuated in host
domain: gene
range: organism
definition: An object property that represents a relation between a gene and an organism, where the gene comes from a pathogen and the organism is a host, and the mutant of the gene for the pathogen is attenuated in the host organism.
definition editor: Edison Ong; Yongqun He; Yu Lin

gene as virulence factor in pathogen
type: ObjectProperty
domain: gene
definition: An object property that represents a relation between a gene and an organism, where the gene is a virulence factor and the organism is a pathogen, and the mutant of the gene for the pathogen is attenuated in the host.
definition editor: Edison Ong; Yongqun He

gene mutant attenuated in host cell line cell
type: ObjectProperty
sub property of: gene mutant attenuated in host cell
domain: gene
range: cell line cell
definition: An object property that represents a relation between a gene and a cell line cell, where the gene comes from a pathogen and the cell line cell comes from a host, and the mutant of the gene for the pathogen is attenuated inside the cell line cell.
definition editor: Edison Ong; Yongqun He

gene mutant attenuated in host cell
type: ObjectProperty
sub property of: gene mutant attenuated in host
domain: gene
range: cell
definition: An object property that represents a relation between a gene and a cell, where the gene comes from a pathogen and the cell comes from a host, and the mutant of the gene for the pathogen is attenuated inside the cell.
definition editor: Edison Ong; Yongqun He; Yu Lin

gene mutant attenuated in host
type: ObjectProperty
domain: gene
definition: An object property that represents a relation between a gene and a host, where the gene comes from a pathogen, and the mutant of the gene for the pathogen is attenuated in the host.
definition editor: Edison Ong; Yongqun He; Yu Lin

has microbe mutated gene
type: ObjectProperty
definition editor: Edison Ong; Yongqun He; Yu Lin

has HPI host
type: ObjectProperty
sub property of: has participant
definition: An object property that represents a relation between a host-pathogen interaction process and an organism (or tissue or cell as part of the organism, or cell line cell derived from organism) which serves as the host that participates in the process.
definition editor: Edison Ong; Yongqun He

has HPI pathogen
type: ObjectProperty
sub property of: has participant
definition: An object property that represents a relation between a host-pathogen interaction process and an organism (or virus) which serves as the pathgen that participates in the process.
definition editor: Edison Ong; Yongqun He

has HPI host organism
type: ObjectProperty
sub property of: has HPI host
definition editor: Edison Ong; Yongqun He

has HPI host cell
type: ObjectProperty
sub property of: has HPI host
definition editor: Edison Ong; Yongqun He

has HPI host cell line cell
type: ObjectProperty
sub property of: has HPI host cell
definition editor: Edison Ong; Yongqun He

gene encoding antigen
type: ObjectProperty
domain: gene
range: PRO_000000001
definition editor: Edison Ong

inheres in
type: ObjectProperty
equivalent property:
  inverse of: bearer of
sub property of: inheres in part of
inverse of: bearer of
editor preferred label: inheres in
example of usage: this fragility inheres in this vase
example of usage: this red color inheres in this apple
definition: a relation between a specifically dependent continuant (the dependent) and an independent continuant (the bearer), in which the dependent specifically depends on the bearer for its existence
editor note: A dependent inheres in its bearer at all times for which the dependent exists.
alternative term: inheres_in
temporal interpretation: RO_0001901

bearer of
type: ObjectProperty
equivalent property:
  inverse of: inheres in
range: specifically dependent continuant
editor preferred label: bearer of
example of usage: this apple is bearer of this red color
example of usage: this vase is bearer of this fragility
definition: a relation between an independent continuant (the bearer) and a specifically dependent continuant (the dependent), in which the dependent specifically depends on the bearer for its existence
editor note: A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist.
alternative term: bearer_of
alternative term: is bearer of
temporal interpretation: RO_0001901
数据库_交叉_引用: RO:0000053
有_obo_命名空间: uberon
id: bearer_of
shorthand: bearer_of

participates_in
type: ObjectProperty
equivalent property:
  inverse of: has participant
inverse of: has participant
domain: continuant
range: occurrent
editor preferred label: participates in
example of usage: this blood clot participates in this blood coagulation
example of usage: this input material (or this output material) participates in this process
example of usage: this investigator participates in this investigation
definition: a relation between a continuant and a process, in which the continuant is somehow involved in the process
alternative term: participates_in
数据库_交叉_引用: RO:0000056
有_obo_命名空间: protein
id: participates_in
is transitive: false
shorthand: participates_in
label: participates in

has participant
type: ObjectProperty
equivalent property:
  inverse of: participates_in
domain: occurrent
range: continuant
property chain axiom: has_part
property chain axiom: realizes
property chain axiom: inheres in
editor preferred label: has participant
example of usage: this blood coagulation has participant this blood clot
example of usage: this investigation has participant this investigator
example of usage: this process has participant this input material (or this output material)
definition: a relation between a process and a continuant, in which the continuant is somehow involved in the process
editor note: Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time.
alternative term: has_participant
Source: http://www.obofoundry.org/ro/#OBO_REL:has_participant

is concretized as
type: ObjectProperty
equivalent property:
  inverse of: concretizes
inverse of: concretizes
domain: generically dependent continuant
range: specifically dependent continuant
example of usage: A journal article is an information artifact that inheres in some number of printed journals. For each copy of the printed journal there is some quality that carries the journal article, such as a pattern of ink. The journal article (a generically dependent continuant) is concretized as the quality (a specifically dependent continuant), and both depend on that copy of the printed journal (an independent continuant).
example of usage: An investigator reads a protocol and forms a plan to carry out an assay. The plan is a realizable entity (a specifically dependent continuant) that concretizes the protocol (a generically dependent continuant), and both depend on the investigator (an independent continuant). The plan is then realized by the assay (a process).
definition: A relationship between a generically dependent continuant and a specifically dependent continuant, in which the generically dependent continuant depends on some independent continuant in virtue of the fact that the specifically dependent continuant also depends on that same independent continuant. A generically dependent continuant may be concretized as multiple specifically dependent continuants.

concretizes
type: ObjectProperty
equivalent property:
  inverse of: is concretized as
domain: specifically dependent continuant
range: generically dependent continuant
example of usage: A journal article is an information artifact that inheres in some number of printed journals. For each copy of the printed journal there is some quality that carries the journal article, such as a pattern of ink. The quality (a specifically dependent continuant) concretizes the journal article (a generically dependent continuant), and both depend on that copy of the printed journal (an independent continuant).
example of usage: An investigator reads a protocol and forms a plan to carry out an assay. The plan is a realizable entity (a specifically dependent continuant) that concretizes the protocol (a generically dependent continuant), and both depend on the investigator (an independent continuant). The plan is then realized by the assay (a process).
definition: A relationship between a specifically dependent continuant and a generically dependent continuant, in which the generically dependent continuant depends on some independent continuant in virtue of the fact that the specifically dependent continuant also depends on that same independent continuant. Multiple specifically dependent continuants can concretize the same generically dependent continuant.

function of
type: ObjectProperty
equivalent property:
  inverse of: has function
sub property of: inheres in
inverse of: has function
domain: function
example of usage: this catalysis function is a function of this enzyme
definition: a relation between a function and an independent continuant (the bearer), in which the function specifically depends on the bearer for its existence
editor note: A function inheres in its bearer at all times for which the function exists, however the function need not be realized at all the times that the function exists.
alternative term: function_of
alternative term: is function of

role of
type: ObjectProperty
equivalent property:
  inverse of: has_role
sub property of: inheres in
inverse of: has_role
example of usage: this investigator role is a role of this person
definition: a relation between a role and an independent continuant (the bearer), in which the role specifically depends on the bearer for its existence
editor note: A role inheres in its bearer at all times for which the role exists, however the role need not be realized at all the times that the role exists.
alternative term: is role of
alternative term: role_of

has function
type: ObjectProperty
equivalent property:
  inverse of: function of
sub property of: bearer of
domain: independent continuant
range: function
example of usage: this enzyme has function this catalysis function (more colloquially: this enzyme has this catalysis function)
definition: a relation between an independent continuant (the bearer) and a function, in which the function specifically depends on the bearer for its existence
editor note: A bearer can have many functions, and its functions can exist for different periods of time, but none of its functions can exist when the bearer does not exist. A function need not be realized at all the times that the function exists.
alternative term: has_function

has disposition
type: ObjectProperty
equivalent property:
  inverse of: disposition of
sub property of: bearer of
inverse of: disposition of
domain: independent continuant
range: disposition
definition: a relation between an independent continuant (the bearer) and a disposition, in which the disposition specifically depends on the bearer for its existence

disposition of
type: ObjectProperty
equivalent property:
  inverse of: has disposition
sub property of: inheres in
definition: inverse of has disposition
in_subset: defined by inverse

derives from
type: ObjectProperty
equivalent property:
  inverse of: derives into
sub property of: topObjectProperty
inverse of: derives into
type: SymmetricProperty
type: TransitiveProperty
domain: independent continuant
range: independent continuant
editor preferred label: derives from
example of usage: this cell derives from this parent cell (cell division)
example of usage: this nucleus derives from this parent nucleus (nuclear division)
has curation status: IAO_0000125
definition: a relation between two distinct material entities, the new entity and the old entity, in which the new entity begins to exist when the old entity ceases to exist, and the new entity inherits the significant portion of the matter of the old entity
editor note: This is a very general relation. More specific relations are preferred when applicable, such as 'directly develops from'.
alternative term: derives_from
curator note: This relation is taken from the RO2005 version of RO. It may be obsoleted and replaced by relations with different definitions. See also the 'develops from' family of relations.
imported from: ro.owl
数据库_交叉_引用: RO:0001000
有_obo_命名空间: protein
id: derives_from
in_subset: eco subset
shorthand: derives_from
label: derives_from

derives into
type: ObjectProperty
equivalent property:
  inverse of: derives from
example of usage: this parent cell derives into this cell (cell division)
example of usage: this parent nucleus derives into this nucleus (nuclear division)
has curation status: IAO_0000125
definition: a relation between two distinct material entities, the old entity and the new entity, in which the new entity begins to exist when the old entity ceases to exist, and the new entity inherits the significant portion of the matter of the old entity
editor note: This is a very general relation. More specific relations are preferred when applicable, such as 'directly develops into'. To avoid making statements about a future that may not come to pass, it is often better to use the backward-looking 'derives from' rather than the forward-looking 'derives into'.
alternative term: derives_into
in_subset: eco subset

location_of
type: ObjectProperty
equivalent property:
  inverse of: located_in
inverse of: located_in
type: TransitiveProperty
editor preferred label: is location of
example of usage: my head is the location of my brain
example of usage: this cage is the location of this rat
definition: a relation between two independent continuants, the location and the target, in which the target is entirely within the location
editor note: Most location relations will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime
alternative term: location_of
temporal interpretation: RO_0001901
数据库_交叉_引用: RO:0001015
有_obo_命名空间: uberon
id: location_of
shorthand: location_of
label: location of

contained in
type: ObjectProperty
inverse of: contains
domain: material entity
range: independent continuant
property chain axiom: located_in
property chain axiom: part of
editor preferred label: contained in
editor note: Containment is location not involving parthood, and arises only where some immaterial continuant is involved.
editor note: Containment obtains in each case between material and immaterial continuants, for instance: lung contained_in thoracic cavity; bladder contained_in pelvic cavity. Hence containment is not a transitive relation. If c part_of c1 at t then we have also, by our definition and by the axioms of mereology applied to spatial regions, c located_in c1 at t. Thus, many examples of instance-level location relations for continuants are in fact cases of instance-level parthood. For material continuants location and parthood coincide. Containment is location not involving parthood, and arises only where some immaterial continuant is involved. To understand this relation, we first define overlap for continuants as follows: c1 overlap c2 at t =def for some c, c part_of c1 at t and c part_of c2 at t. The containment relation on the instance level can then be defined (see definition):
editor note: Intended meaning: domain: material entity range: spatial region or site (immaterial continuant)
alternative term: contained_in
temporal interpretation: RO_0001901
in_subset: eco subset

contains
type: ObjectProperty
editor preferred label: contains
temporal interpretation: RO_0001901
数据库_交叉_引用: RO:0001019
有_obo_命名空间: uberon
id: contains
in_subset: eco subset
shorthand: contains

located_in
type: ObjectProperty
equivalent property:
  inverse of: location_of
type: TransitiveProperty
domain: independent continuant
domain: Class
  intersection of: independent continuant
  intersection of: Class
    complement of: spatial region
range: independent continuant
range: Class
  intersection of: independent continuant
  intersection of: Class
    complement of: spatial region
editor preferred label: located in
example of usage: my brain is located in my head
example of usage: this rat is located in this cage
definition: a relation between two independent continuants, the target and the location, in which the target is entirely within the location
editor note: Location as a relation between instances: The primitive instance-level relation c located_in r at t reflects the fact that each continuant is at any given time associated with exactly one spatial region, namely its exact location. Following we can use this relation to define a further instance-level location relation - not between a continuant and the region which it exactly occupies, but rather between one continuant and another. c is located in c1, in this sense, whenever the spatial region occupied by c is part_of the spatial region occupied by c1. Note that this relation comprehends both the relation of exact location between one continuant and another which obtains when r and r1 are identical (for example, when a portion of fluid exactly fills a cavity), as well as those sorts of inexact location relations which obtain, for example, between brain and head or between ovum and uterus
editor note: Most location relations will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime
alternative term: located_in
temporal interpretation: RO_0001901
Source: http://www.obofoundry.org/ro/#OBO_REL:located_in
数据库_交叉_引用: RO:0001025
有_obo_命名空间: protein
有_obo_命名空间: uberon
id: located_in
shorthand: located_in
label: located in

Axiom
annotated source: located_in
annotated property: domain
annotated target: independent continuant
editor note: This is redundant with the more specific 'independent and not spatial region' constraint. We leave in the redundant axiom for use with reasoners that do not use negation.

Axiom
annotated source: located_in
annotated property: range
annotated target: independent continuant
editor note: This is redundant with the more specific 'independent and not spatial region' constraint. We leave in the redundant axiom for use with reasoners that do not use negation.

boundary of
type: ObjectProperty
equivalent property:
  inverse of: has boundary
sub property of: mereotopologically related to
inverse of: has boundary
example of usage: the surface of my skin is a 2D boundary of my body
definition: a relation between a 2D immaterial entity (the boundary) and a material entity, in which the boundary delimits the material entity
editor note: A 2D boundary may have holes and gaps, but it must be a single connected entity, not an aggregate of several disconnected parts.
editor note: Although the boundary is two-dimensional, it exists in three-dimensional space and thus has a 3D shape.
alternative term: 2D_boundary_of
alternative term: boundary of
alternative term: is 2D boundary of
alternative term: is boundary of
temporal interpretation: RO_0001901
数据库_交叉_引用: RO:0002000
有_obo_命名空间: uberon
id: boundary_of
shorthand: boundary_of
label: 2D boundary of

has boundary
type: ObjectProperty
equivalent property:
  inverse of: boundary of
sub property of: mereotopologically related to
domain: material entity
range: immaterial entity
example of usage: my body has 2D boundary the surface of my skin
definition: a relation between a material entity and a 2D immaterial entity (the boundary), in which the boundary delimits the material entity
editor note: A 2D boundary may have holes and gaps, but it must be a single connected entity, not an aggregate of several disconnected parts.
editor note: Although the boundary is two-dimensional, it exists in three-dimensional space and thus has a 3D shape.
definition editor: David Osumi-Sutherland
alternative term: has boundary
alternative term: has_2D_boundary
temporal interpretation: RO_0001901
数据库_交叉_引用: RO:0002002
有_obo_命名空间: uberon
id: has_boundary
shorthand: has_boundary
label: has 2D boundary

innervated_by
type: ObjectProperty
inverse of: innervates
domain: connected anatomical structure
range: neuron projection bundle
property chain axiom: branching_part_of
definition editor: David Osumi-Sutherland
cites as authority: http://www.ncbi.nlm.nih.gov/pubmed/22402613
数据库_交叉_引用: RO:0002005
has_exact_synonym: nerve supply
有_obo_命名空间: uberon
id: innervated_by
shorthand: innervated_by
comment: http://code.google.com/p/obo-relations/issues/detail

Axiom
annotated source: innervated_by
annotated property: has_exact_synonym
annotated target: nerve supply
数据库_交叉_引用: FMA:85999

bounding layer of
type: ObjectProperty
sub property of: part of
domain: Class
  intersection of: material entity
  intersection of: Restriction
    on property: bearer of
    some values from: PATO_0002124
range: material entity
definition: X outer_layer_of Y iff: . X :continuant that bearer_of some PATO:laminar . X part_of Y . exists Z :surface . X has_boundary Z . Z boundary_of Y has_boundary: http://purl.obolibrary.org/obo/RO_0002002 boundary_of: http://purl.obolibrary.org/obo/RO_0002000
definition editor: David Osumi-Sutherland
数据库_交叉_引用: RO:0002007
有_obo_命名空间: uberon
id: bounding_layer_of
in_subset: eco subset
shorthand: bounding_layer_of
comment: A relationship that applies between a continuant and its outer, bounding layer. Examples include the relationship between a multicellular organism and its integument, between an animal cell and its plasma membrane, and between a membrane bound organelle and its outer/bounding membrane.

has regulatory component activity
type: ObjectProperty
sub property of: has component activity
sub property of: regulated by
definition: A 'has regulatory component activity' B if A and B are GO molecular functions (GO_0003674), A has_component B and A is regulated by B.
created_by: dos
creation_date: 2017-05-24T09:30:46Z

has negative regulatory component activity
type: ObjectProperty
sub property of: has regulatory component activity
sub property of: negatively regulated by
definition: A relationship that holds between a GO molecular function and a component of that molecular function that negatively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is negatively regulated by B.
created_by: dos
creation_date: 2017-05-24T09:31:01Z
comment: By convention GO molecular functions are classified by their effector function. Internal regulatory functions are treated as components. For example, NMDA glutmate receptor activity is a cation channel activity with positive regulatory component 'glutamate binding' and negative regulatory components including 'zinc binding' and 'magnesium binding'.

has positive regulatory component activity
type: ObjectProperty
sub property of: has regulatory component activity
sub property of: positively regulated by
definition: A relationship that holds between a GO molecular function and a component of that molecular function that positively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is positively regulated by B.
created_by: dos
creation_date: 2017-05-24T09:31:17Z
comment: By convention GO molecular functions are classified by their effector function and internal regulatory functions are treated as components. So, for example calmodulin has a protein binding activity that has positive regulatory component activity calcium binding activity. Receptor tyrosine kinase activity is a tyrosine kinase activity that has positive regulatory component 'ligand binding'.

has component activity
type: ObjectProperty
sub property of: has component process
created_by: dos
creation_date: 2017-05-24T09:44:33Z
comment: A 'has component activity' B if A is A and B are molecular functions (GO_0003674) and A has_component B.

has component process
type: ObjectProperty
sub property of: has_component
domain: process
range: process
definition: w 'has process component' p if p and w are processes, w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type.
created_by: dos
creation_date: 2017-05-24T09:49:21Z

has ligand
type: ObjectProperty
sub property of: has input
domain: GO_0004872
definition: A relationship that holds between between a receptor and an chemical entity, typically a small molecule or peptide, that carries information between cells or compartments of a cell and which binds the receptor and regulates its effector function.
created_by: dos
creation_date: 2017-07-19T17:30:36Z

directly regulated by
type: ObjectProperty
sub property of: regulated by
inverse of: directly regulates
created_by: dos
creation_date: 2017-09-17T13:52:24Z
comment: Process(P2) is directly regulated by process(P1) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2.

Axiom
annotated source: directly regulated by
annotated property: comment
annotated target: Process(P2) is directly regulated by process(P1) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2.
数据库_交叉_引用: GOC:dos

directly negatively regulated by
type: ObjectProperty
sub property of: directly regulated by
inverse of: directly negatively regulates
definition: Process(P2) is directly negatively regulated by process(P1) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P2 directly negatively regulated by P1.
created_by: dos
creation_date: 2017-09-17T13:52:38Z

Axiom
annotated source: directly negatively regulated by
annotated property: definition
annotated target: Process(P2) is directly negatively regulated by process(P1) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P2 directly negatively regulated by P1.
数据库_交叉_引用: GOC:dos

directly positively regulated by
type: ObjectProperty
sub property of: directly regulated by
inverse of: directly positively regulates
definition: Process(P2) is directly postively regulated by process(P1) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P2 is directly postively regulated by P1.
created_by: dos
creation_date: 2017-09-17T13:52:47Z

Axiom
annotated source: directly positively regulated by
annotated property: definition
annotated target: Process(P2) is directly postively regulated by process(P1) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P2 is directly postively regulated by P1.
数据库_交叉_引用: GOC:dos

has effector activity
type: ObjectProperty
sub property of: has component activity
sub property of: regulates
type: FunctionalProperty
definition: A 'has effector activity' B if A and B are GO molecular functions (GO_0003674), A 'has component activity' B and B is the effector (output function) of B. Each compound function has only one effector activity.
created_by: dos
creation_date: 2017-09-22T14:14:36Z
comment: This relation is designed for constructing compound molecular functions, typically in combination with one or more regulatory component activity relations.

Axiom
annotated source: has effector activity
annotated property: definition
annotated target: A 'has effector activity' B if A and B are GO molecular functions (GO_0003674), A 'has component activity' B and B is the effector (output function) of B. Each compound function has only one effector activity.
数据库_交叉_引用: GOC:dos

ends after
type: ObjectProperty
sub property of: temporal relation
type: TransitiveProperty
definition editor: David Osumi-Sutherland
in_subset: eco subset
comment: X ends_after Y iff: end(Y) before_or_simultaneous_with end(X)

immediately_preceded_by
type: ObjectProperty
sub property of: preceded_by
inverse of: immediately precedes
property chain axiom: starts with
property chain axiom: ends with
definition: X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y)
definition editor: David Osumi-Sutherland
alternative term: starts_at_end_of
external_definition: A non-transitive temporal relation in which one process immediately precedes another process, such that there is no interval of time between the two processes[SIO:000251].
数据库_交叉_引用: RO:0002087
has_exact_synonym: directly preceded by
has_exact_synonym: is directly preceded by
has_exact_synonym: is immediately preceded by
has_exact_synonym: starts_at_end_of
有_obo_命名空间: uberon
id: immediately_preceded_by
shorthand: immediately_preceded_by
comment: X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y)
label: immediately preceded by

Axiom
annotated source: immediately_preceded_by
annotated property: external_definition
annotated target: A non-transitive temporal relation in which one process immediately precedes another process, such that there is no interval of time between the two processes[SIO:000251].
source: SIO:000251

Axiom
annotated source: immediately_preceded_by
annotated property: has_exact_synonym
annotated target: is immediately preceded by
数据库_交叉_引用: SIO:000251

immediately precedes
type: ObjectProperty
sub property of: precedes
property chain axiom: ends with
property chain axiom: starts with
definition editor: David Osumi-Sutherland
alternative term: ends_at_start_of
alternative term: meets
is direct form of: precedes
in_subset: eco subset
comment: X immediately_precedes_Y iff: end(X) simultaneous_with start(Y)

overlaps
type: ObjectProperty
sub property of: mereotopologically related to
property chain axiom: part of
property chain axiom: has_part
has curation status: IAO_0000125
definition: A overlaps B if they share some part in common.
definition: x overlaps y if and only if there exists some z such that x has part z and z part of y
expand expression to: BFO_0000051 some (BFO_0000050 some ?Y)
expand expression to: http://purl.obolibrary.org/obo/BFO_0000051 some (http://purl.obolibrary.org/obo/BFO_0000050 some ?Y)
temporal interpretation: RO_0001901
数据库_交叉_引用: RO:0002131
有_obo_命名空间: uberon
id: overlaps
in_subset: eco subset
shorthand: overlaps

Axiom
annotated source: overlaps
annotated property: propertyChainAxiom
annotated target: has_part
annotated target: part of
RO_0002582: true

innervates
type: ObjectProperty
sub property of: topObjectProperty
domain: neuron projection bundle
property chain axiom: part of
has curation status: IAO_0000125
definition: Relation between a 'neuron projection bundle' and a region in which one or more of its component neuron projections either synapses to targets or receives synaptic input. T innervates some R Expands_to: T has_fasciculating_neuron_projection that synapse_in some R.
definition editor: David Osumi-Sutherland
expand expression to: <http://purl.obolibrary.org/obo/RO_0002132> some (<http://purl.obolibrary.org/obo/GO_0043005> that (<http://purl.obolibrary.org/obo/RO_0002131> some (<http://purl.obolibrary.org/obo/GO_0045202> that <http://purl.obolibrary.org/obo/BFO_0000050> some Y?)))
temporal interpretation: RO_0001901
cites as authority: http://www.ncbi.nlm.nih.gov/pubmed/22402613
数据库_交叉_引用: RO:0002134
有_obo_命名空间: uberon
id: innervates
shorthand: innervates
comment: http://code.google.com/p/obo-relations/issues/detail

continuous_with
type: ObjectProperty
sub property of: mereotopologically related to
type: SymmetricProperty
domain: independent continuant
range: independent continuant
has curation status: IAO_0000125
definition: X continuous_with Y if and only if X and Y share a fiat boundary.
definition editor: David Osumi-Sutherland
alternative term: connected to
curator note: The label for this relation was previously connected to. I relabeled this to "continuous with". The standard notion of connectedness does not imply shared boundaries - e.g. Glasgow connected_to Edinburgh via M8; my patella connected_to my femur (via patellar-femoral joint)
temporal interpretation: RO_0001901
数据库_交叉_引用: RO:0002150
有_obo_命名空间: uberon
id: continuous_with
shorthand: continuous_with
label: continuous with

spatially disjoint from
type: ObjectProperty
sub property of: mereotopologically related to
has curation status: IAO_0000125
definition: A is spatially_disjoint_from B if and only if they have no parts in common
editor note: There are two ways to encode this as a shortcut relation. The other possibility to use an annotation assertion between two classes, and expand this to a disjointness axiom.
definition editor: Chris Mungall
definition source: http://www.ncbi.nlm.nih.gov/pubmed/22293552
curator note: Note that it would be possible to use the relation to label the relationship between a near infinite number of structures - between the rings of saturn and my left earlobe. The intent is that this is used for parsiomoniously for disambiguation purposes - for example, between siblings in a jointly exhaustive pairwise disjointness hierarchy
expand expression to: BFO_0000051 exactly 0 (BFO_0000050 some ?Y)
temporal interpretation: RO_0001901
in_subset: eco subset

connected to
type: ObjectProperty
sub property of: mereotopologically related to
sub property of: transitively_connected to
domain: Restriction
  on property: part of
  some values from: RO_0002577
range: Restriction
  on property: part of
  some values from: RO_0002577
property chain axiom:
  inverse of: connects
property chain axiom: connects
example of usage: a 'toe distal phalanx bone' that is connected to a 'toe medial phalanx bone' (an interphalangeal joint *connects* these two bones).
definition: Binary relationship: x connected_to y if and only if there exists some z such that z connects x and y in a ternary connected_to(x,y,z) relationship.
definition: a is connected to b if and only if a and b are discrete structure, and there exists some connecting structure c, such that c connects a and b
definition source: http://www.ncbi.nlm.nih.gov/pubmed/22293552
数据库_交叉_引用: RO:0002170
有_obo_命名空间: uberon
id: connected_to
shorthand: connected_to
comment: Connection does not imply overlaps.

Axiom
annotated source: connected to
annotated property: definition
annotated target: Binary relationship: x connected_to y if and only if there exists some z such that z connects x and y in a ternary connected_to(x,y,z) relationship.
数据库_交叉_引用: Connectivity-Design-Pattern

connects
type: ObjectProperty
sub property of: mereotopologically related to
domain: independent continuant
range: Restriction
  on property: part of
  some values from: RO_0002577
example of usage: The M8 connects Glasgow and Edinburgh
example of usage: a 'toe distal phalanx bone' that is connected to a 'toe medial phalanx bone' (an interphalangeal joint *connects* these two bones).
definition: Binary relationship: z connects x if and only if there exists some y such that z connects x and y in a ternary connected_to(x,y,z) relationship.
definition: c connects a if and only if there exist some b such that a and b are similar parts of the same system, and c connects b, specifically, c connects a with b. When one structure connects two others it unites some aspect of the function or role they play within the system.
editor note: this is currently used for both structural relationships (such as between a valve and the chamber it connects) and abstract relationships (anatomical lines and the entities they connect)
definition source: http://www.ncbi.nlm.nih.gov/pubmed/22293552
数据库_交叉_引用: RO:0002176
有_obo_命名空间: uberon
id: connects
shorthand: connects

Axiom
annotated source: connects
annotated property: definition
annotated target: Binary relationship: z connects x if and only if there exists some y such that z connects x and y in a ternary connected_to(x,y,z) relationship.
数据库_交叉_引用: Connectivity-Design-Pattern

attaches_to_part_of
type: ObjectProperty
sub property of: mereotopologically related to
sub property of: biomechanically related to
domain: connected anatomical structure
range: connected anatomical structure
property chain axiom: attaches_to
property chain axiom: part of
definition: a is attached to part of b if a is attached to b, or a is attached to some p, where p is part of b.
OBO foundry unique label: attached to part of (anatomical structure to anatomical structure)
数据库_交叉_引用: RO:0002177
有_obo_命名空间: uberon
id: attaches_to_part_of
shorthand: attaches_to_part_of
label: attached to part of

Axiom
annotated source: attaches_to_part_of
annotated property: propertyChainAxiom
annotated target: attaches_to
annotated target: part of
IAO is reversible property chain: true

Axiom
annotated source: attaches_to_part_of
annotated property: propertyChainAxiom
annotated target: attaches_to
annotated target: part of
RO_0002582: true

supplies
type: ObjectProperty
sub property of: connected to
domain: UBERON_0001637
definition: Relation between an arterial structure and another structure, where the arterial structure acts as a conduit channeling fluid, substance or energy.
definition: relation between an artery and the structure is supplies with blood.
editor note: Individual ontologies should provide their own constraints on this abstract relation. For example, in the realm of anatomy this should hold between an artery and an anatomical structure
definition source: http://www.ncbi.nlm.nih.gov/pubmed/20064205
数据库_交叉_引用: RO:0002178
has_exact_synonym: arterial supply of
有_obo_命名空间: uberon
id: supplies
shorthand: supplies
comment: source: FMA

Axiom
annotated source: supplies
annotated property: has_exact_synonym
annotated target: arterial supply of
数据库_交叉_引用: FMA:86003

drains
type: ObjectProperty
sub property of: connected to
domain: UBERON_0001638
definition: Relation between an collecting structure and another structure, where the collecting structure acts as a conduit channeling fluid, substance or energy away from the other structure.
editor note: Individual ontologies should provide their own constraints on this abstract relation. For example, in the realm of anatomy this should hold between a vein and an anatomical structure
definition source: http://www.ncbi.nlm.nih.gov/pubmed/20064205
数据库_交叉_引用: RO:0002179
has_exact_synonym: drains blood from
has_exact_synonym: drains from
有_obo_命名空间: uberon
id: drains
shorthand: drains
comment: source: Wikipedia

has_component
type: ObjectProperty
sub property of: has_part
has curation status: IAO_0000125
definition: w 'has component' p if w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type.
editor note: The definition of 'has component' is still under discussion. The challenge is in providing a definition that does not imply transitivity.
curator note: For use in recording has_part with a cardinality constraint, because OWL does not permit cardinality constraints to be used in combination with transitive object properties. In situations where you would want to say something like 'has part exactly 5 digit, you would instead use has_component exactly 5 digit.
temporal interpretation: RO_0001901
数据库_交叉_引用: RO:0002180
有_obo_命名空间: protein
有_obo_命名空间: uberon
id: has_component
in_subset: eco subset
is transitive: false
shorthand: has_component
label: has component

develops_from
type: ObjectProperty
sub property of: has developmental contribution from
sub property of: developmentally preceded by
inverse of: develops_into
type: TransitiveProperty
domain: independent continuant
range: independent continuant
property chain axiom: part of
has curation status: IAO_0000125
definition: x develops from y if and only if either (a) x directly develops from y or (b) there exists some z such that x directly develops from z and z develops from y
definition editor: Chris Mungall
definition editor: David Osumi-Sutherland
definition editor: Melissa Haendel
definition editor: Terry Meehan
数据库_交叉_引用: RO:0002202
有_obo_命名空间: uberon
id: develops_from
shorthand: develops_from
comment: This is the transitive form of the develops from relation
label: develops from

develops_into
type: ObjectProperty
sub property of: developmentally succeeded by
sub property of: has potential to develop into
sub property of: has potential to directly develop into
type: TransitiveProperty
has curation status: IAO_0000125
definition: inverse of develops from
definition editor: Chris Mungall
definition editor: David Osumi-Sutherland
definition editor: Terry Meehan
数据库_交叉_引用: RO:0002203
有_obo_命名空间: uberon
id: develops_into
in_subset: defined by inverse
shorthand: develops_into
label: develops into

directly_develops_from
type: ObjectProperty
sub property of: develops_from
inverse of: directly develops into
domain: Class
  union of: multicellular anatomical structure
  union of: cell
range: Class
  union of: multicellular anatomical structure
  union of: cell
has curation status: IAO_0000125
definition: Candidate definition: x directly_develops from y if and only if there exists some developmental process (GO:0032502) p such that x and y both participate in p, and x is the output of p and y is the input of p, and a substantial portion of the matter of x comes from y, and the start of x is coincident with or after the end of y.
definition editor: Chris Mungall
definition editor: David Osumi-Sutherland
definition editor: has developmental precursor
definition source: FBbt
is direct form of: develops_from
数据库_交叉_引用: RO:0002207
有_obo_命名空间: uberon
id: directly_develops_from
shorthand: directly_develops_from
comment: TODO - add child relations from DOS
label: directly develops from

directly develops into
type: ObjectProperty
sub property of: develops_into
has curation status: IAO_0000125
definition: inverse of directly develops from
alternative term: developmental precursor of
in_subset: defined by inverse

regulates
type: ObjectProperty
sub property of: causally upstream of
inverse of: regulated by
type: TransitiveProperty
domain: process
range: process
property chain axiom: ends with
property chain axiom: directly regulates
has curation status: IAO_0000125
definition: process(P1) regulates process(P2) iff: P1 results in the initiation or termination of P2 OR affects the frequency of its initiation or termination OR affects the magnitude or rate of output of P2.
editor note: We use 'regulates' here to specifically imply control. However, many colloquial usages of the term correctly correspond to the weaker relation of 'causally upstream of or within' (aka influences). Consider relabeling to make things more explicit
definition editor: Chris Mungall
definition editor: David Hill
definition editor: Tanya Berardini
definition source: causal-relations
definition source: GO
curator note: Regulation precludes parthood; the regulatory process may not be within the regulated process.
OBO foundry unique label: regulates (processual)
elucidation: false
数据库_交叉_引用: RO:0002211
有_obo_命名空间: external
id: regulates
shorthand: regulates

negatively regulates
type: ObjectProperty
sub property of: regulates
sub property of: causally upstream of, negative effect
inverse of: negatively regulated by
property chain axiom: ends with
definition: Process(P1) negatively regulates process(P2) iff: P1 terminates P2, or P1 descreases the the frequency of initiation of P2 or the magnitude or rate of output of P2.
definition editor: Chris Mungall
definition source: causal-relations
OBO foundry unique label: negatively regulates (process to process)
is negative form of: regulates
数据库_交叉_引用: RO:0002212
有_obo_命名空间: external
id: negatively_regulates
shorthand: negatively_regulates

positively regulates
type: ObjectProperty
sub property of: regulates
sub property of: causally upstream of, positive effect
inverse of: positively regulated by
type: TransitiveProperty
property chain axiom: negatively regulates
property chain axiom: ends with
definition: Process(P1) postively regulates process(P2) iff: P1 initiates P2, or P1 increases the the frequency of initiation of P2 or the magnitude or rate of output of P2.
definition editor: Chris Mungall
definition source: causal-relations
OBO foundry unique label: positively regulates (process to process)
is positive form of: regulates
数据库_交叉_引用: RO:0002213
有_obo_命名空间: external
id: positively_regulates
shorthand: positively_regulates

capable_of
type: ObjectProperty
sub property of: capable of part of
sub property of: functionally related to
domain: independent continuant
range: process
example of usage: mechanosensory neuron capable of detection of mechanical stimulus involved in sensory perception (GO:0050974)
example of usage: osteoclast SubClassOf 'capable of' some 'bone resorption'
definition: A relation between a material entity (such as a cell) and a process, in which the material entity has the ability to carry out the process.
definition editor: Chris Mungall
alternative term: has function realized in
definition source: http://www.ncbi.nlm.nih.gov/pubmed/20123131
definition source: http://www.ncbi.nlm.nih.gov/pubmed/21208450
curator note: For compatibility with BFO, this relation has a shortcut definition in which the expression "capable of some P" expands to "bearer_of (some realized_by only P)".
expand expression to: RO_0000053 some (RO_0000054 only ?Y)
数据库_交叉_引用: RO:0002215
有_obo_命名空间: protein
有_obo_命名空间: uberon
id: capable_of
in_subset: eco subset
is transitive: false
shorthand: capable_of
label: capable of

capable of part of
type: ObjectProperty
sub property of: functionally related to
sub property of: causal agent in process
property chain axiom: capable_of
property chain axiom: part of
definition: c stands in this relationship to p if and only if there exists some p' such that c is capable_of p', and p' is part_of p.
definition editor: Chris Mungall
alternative term: has function in
expand expression to: RO_0000053 some (RO_0000054 only (BFO_0000050 some ?Y))
数据库_交叉_引用: RO:0002216
有_obo_命名空间: uberon
id: capable_of_part_of
shorthand: capable_of_part_of

Axiom
annotated source: capable of part of
annotated property: propertyChainAxiom
annotated target: capable_of
annotated target: part of
RO_0002582: true

actively participates in
type: ObjectProperty
sub property of: participates_in
inverse of: obsolete has active participant
definition: x actively participates in y if and only if x participates in y and x realizes some active role
definition editor: Chris Mungall
alternative term: agent in

obsolete has active participant
type: ObjectProperty
sub property of: has participant
example of usage: 'heart development' has active participant some Shh protein
has curation status: IAO_0000125
definition: x has participant y if and only if x realizes some active role that inheres in y
editor note: This may be obsoleted and replaced by the original 'has agent' relation
definition editor: Chris Mungall
alternative term: has agent
in_subset: eco subset
deprecated: true

surrounded_by
type: ObjectProperty
sub property of: adjacent to
inverse of: surrounds
editor preferred label: surrounded by
has curation status: IAO_0000125
definition: x surrounded_by y if and only if (1) x is adjacent to y and for every region r that is adjacent to x, r overlaps y (2) the shared boundary between x and y occupies the majority of the outermost boundary of x
definition: x surrounded_by y if and only if x is adjacent to y and for every region r that is adjacent to x, r overlaps y
definition: x surrounded_by y iff: x is adjacent to y and for every region r adjacent to x, r overlaps y
definition editor: Chris Mungall
imported from: ro.owl
temporal interpretation: RO_0001901
数据库_交叉_引用: RO:0002219
有_obo_命名空间: uberon
id: surrounded_by
shorthand: surrounded_by
label: surrounded by

Axiom
annotated source: surrounded_by
annotated property: definition
annotated target: x surrounded_by y iff: x is adjacent to y and for every region r adjacent to x, r overlaps y
数据库_交叉_引用: https://orcid.org/0000-0002-6601-2165

adjacent to
type: ObjectProperty
sub property of: spatially disjoint from
type: SymmetricProperty
domain: independent continuant
range: independent continuant
example of usage: A caterpillar walking on the surface of a leaf is adjacent_to the leaf, if one of the caterpillar appendages is touching the leaf. In contrast, a butterfly flying close to a flower is not considered adjacent, unless there are any touching parts.
example of usage: The epidermis layer of a vertebrate is adjacent to the dermis.
example of usage: The plasma membrane of a cell is adjacent to the cytoplasm, and also to the cell lumen which the cytoplasm occupies.
example of usage: The skin of the forelimb is adjacent to the skin of the torso if these are considered anatomical subdivisions with a defined border. Otherwise a relation such as continuous_with would be used.
has curation status: IAO_0000125
definition: x adjacent to y if and only if x and y share a boundary.
definition: x adjacent_to y iff: x and y share a boundary
editor note: This relation acts as a join point with BSPO
definition editor: Chris Mungall
temporal interpretation: RO_0001901
数据库_交叉_引用: RO:0002220
有_obo_命名空间: uberon
id: adjacent_to
shorthand: adjacent_to
label: adjacent_to

Axiom
annotated source: adjacent to
annotated property: example of usage
annotated target: A caterpillar walking on the surface of a leaf is adjacent_to the leaf, if one of the caterpillar appendages is touching the leaf. In contrast, a butterfly flying close to a flower is not considered adjacent, unless there are any touching parts.

surrounds
type: ObjectProperty
sub property of: adjacent to
has curation status: IAO_0000125
definition: inverse of surrounded by
definition: inverse of surrounded_by
definition editor: Chris Mungall
temporal interpretation: RO_0001901
数据库_交叉_引用: RO:0002221
有_obo_命名空间: uberon
id: surrounds
in_subset: defined by inverse
shorthand: surrounds

Axiom
annotated source: surrounds
annotated property: definition
annotated target: inverse of surrounded_by
数据库_交叉_引用: https://orcid.org/0000-0002-6601-2165

temporal relation
type: ObjectProperty
domain: occurrent
range: occurrent
has curation status: IAO_0000125
editor note: move to BFO?
definition editor: Chris Mungall
definition source: Allen's interval algebra
definition source: Allen
curator note: Do not use this relation directly. It is ended as a grouping for relations between occurrents involving the relative timing of their starts and ends.
source: https://docs.google.com/document/d/1kBv1ep_9g3sTR-SD3jqzFqhuwo9TPNF-l-9fUDbO6rM/edit
in_subset: eco subset
comment: A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations.
label: temporally related to

starts
type: ObjectProperty
sub property of: part of
sub property of: temporal relation
inverse of: starts with
has curation status: IAO_0000125
definition: Relation between occurrents, shares a start boundary with.
definition: inverse of starts with
definition editor: Chris Mungall
definition source: Allen
数据库_交叉_引用: RO:0002223
有_obo_命名空间: uberon
id: starts
in_subset: eco subset
shorthand: starts

Axiom
annotated source: starts
annotated property: definition
annotated target: Relation between occurrents, shares a start boundary with.
数据库_交叉_引用: https://orcid.org/0000-0002-6601-2165
数据库_交叉_引用: Allen:starts

starts with
type: ObjectProperty
sub property of: has_part
sub property of: temporal relation
type: TransitiveProperty
example of usage: Every insulin receptor signaling pathway starts with the binding of a ligand to the insulin receptor
has curation status: IAO_0000125
definition: x starts with y if and only if x has part y and the time point at which x starts is equivalent to the time point at which y starts. Formally: α(y) = α(x) ∧ ω(y) < ω(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.
definition editor: Chris Mungall
alternative term: started by
数据库_交叉_引用: RO:0002224
有_obo_命名空间: uberon
id: starts_with
in_subset: eco subset
shorthand: starts_with

develops_from_part_of
type: ObjectProperty
sub property of: develops_from
property chain axiom: directly_develops_from
property chain axiom: part of
has curation status: IAO_0000125
definition: x develops from part of y if and only if there exists some z such that x develops from z and z is part of y
definition editor: Chris Mungall
数据库_交叉_引用: RO:0002225
有_obo_命名空间: uberon
id: develops_from_part_of
shorthand: develops_from_part_of
label: develops from part of

develops_in
type: ObjectProperty
sub property of: developmentally preceded by
domain: anatomical entity
property chain axiom: directly_develops_from
property chain axiom: located_in
has curation status: IAO_0000125
definition: x develops_in y if x is located in y whilst x is developing
definition editor: Chris Mungall
definition source: EHDAA2
definition source: Jonathan Bard, EHDAA2
数据库_交叉_引用: RO:0002226
有_obo_命名空间: uberon
id: develops_in
shorthand: develops_in
comment: This relation take from EHDAA2 - precise semantics yet to be defined
label: develops in

ends
type: ObjectProperty
sub property of: part of
sub property of: temporal relation
inverse of: ends with
has curation status: IAO_0000125
definition: Relation between occurrents, shares an end boundary with.
definition: inverse of ends with
definition editor: Chris Mungall
数据库_交叉_引用: RO:0002229
has_exact_synonym: finishes
有_obo_命名空间: uberon
id: ends
in_subset: eco subset
shorthand: ends

Axiom
annotated source: ends
annotated property: definition
annotated target: Relation between occurrents, shares an end boundary with.
数据库_交叉_引用: https://orcid.org/0000-0002-6601-2165
数据库_交叉_引用: Allen:starts
数据库_交叉_引用: ZFS:finishes

ends with
type: ObjectProperty
sub property of: has_part
sub property of: temporal relation
type: TransitiveProperty
has curation status: IAO_0000125
definition: x ends with y if and only if x has part y and the time point at which x ends is equivalent to the time point at which y ends. Formally: α(y) > α(x) ∧ ω(y) = ω(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.
definition editor: Chris Mungall
alternative term: finished by
数据库_交叉_引用: RO:0002230
有_obo_命名空间: uberon
id: ends_with
in_subset: eco subset
shorthand: ends_with

has start location
type: ObjectProperty
sub property of: has part that occurs in
domain: process
range: independent continuant
property chain axiom: starts with
property chain axiom: occurs in
has curation status: IAO_0000125
definition: x 'has starts location' y if and only if there exists some process z such that x 'starts with' z and z 'occurs in' y
definition editor: Chris Mungall
alternative term: starts with process that occurs in
in_subset: eco subset

has end location
type: ObjectProperty
sub property of: has part that occurs in
domain: process
range: independent continuant
property chain axiom: ends with
property chain axiom: occurs in
has curation status: IAO_0000125
definition: x 'has end location' y if and only if there exists some process z such that x 'ends with' z and z 'occurs in' y
definition editor: Chris Mungall
alternative term: ends with process that occurs in
in_subset: eco subset

has input
type: ObjectProperty
sub property of: has participant
inverse of: input of
domain: process
range: material entity
property chain axiom: starts with
has curation status: IAO_0000125
definition: p has input c iff: p is a process, c is a material entity, c is a participant in p, c is present at the start of p, and the state of c is modified during p.
definition editor: Chris Mungall
alternative term: consumes
in_subset: eco subset

has output
type: ObjectProperty
sub property of: has participant
inverse of: output_of
property chain axiom: ends with
has curation status: IAO_0000125
definition: p has output c iff c is a participant in p, c is present at the end of p, and c is not present at the beginning of p.
definition editor: Chris Mungall
alternative term: produces
in_subset: eco subset

has developmental contribution from
type: ObjectProperty
sub property of: developmentally preceded by
inverse of: developmentally_contributes_to
type: TransitiveProperty
domain: anatomical entity
range: anatomical entity
property chain axiom: has_part
property chain axiom: develops_from
example of usage: Mammalian thymus has developmental contribution from some pharyngeal pouch 3; Mammalian thymus has developmental contribution from some pharyngeal pouch 4 [Kardong]
has curation status: IAO_0000125
definition: x has developmental contribution from y iff x has some part z such that z develops from y
definition editor: Chris Mungall
数据库_交叉_引用: RO:0002254
有_obo_命名空间: uberon
id: has_developmental_contribution_from
shorthand: has_developmental_contribution_from

developmentally_contributes_to
type: ObjectProperty
sub property of: developmentally succeeded by
sub property of: has potential to developmentally contribute to
property chain axiom: develops_into
property chain axiom: part of
has curation status: IAO_0000125
definition: inverse of has developmental contribution from
definition editor: Chris Mungall
数据库_交叉_引用: RO:0002255
有_obo_命名空间: uberon
id: developmentally_contributes_to
in_subset: defined by inverse
shorthand: developmentally_contributes_to
label: developmentally contributes to

developmentally_induced_by
type: ObjectProperty
sub property of: developmentally preceded by
inverse of: developmentally induces
domain: connected anatomical structure
range: connected anatomical structure
has curation status: IAO_0000125
definition: t1 developmentally_induced_by t2 if there is a process of organ induction (GO:0001759) with t1 and t2 as interacting participants. t2 causes t1 to change its fate from a precursor tissue type T to T', where T' develops_from T.
definition: t1 induced_by t2 if there is a process of developmental induction (GO:0031128) with t1 and t2 as interacting participants. t2 causes t1 to change its fate from a precursor anatomical structure type T to T', where T' develops_from T
definition editor: Chris Mungall
definition editor: David Osumi-Sutherland
definition editor: Melissa Haendel
alternative term: induced by
definition source: http://www.ncbi.nlm.nih.gov/pubmed/20064205
definition source: Developmental Biology, Gilbert, 8th edition, figure 6.5(F)
definition source: GO:0001759
curator note: We place this under 'developmentally preceded by'. This placement should be examined in the context of reciprocal inductions[cjm]
数据库_交叉_引用: RO:0002256
有_obo_命名空间: uberon
id: developmentally_induced_by
shorthand: developmentally_induced_by
comment: sources for developmentally_induced_by relationships in Uberon: Developmental Biology, Gilbert, 8th edition, figure 6.5(F)
label: developmentally induced by

Axiom
annotated source: developmentally_induced_by
annotated property: definition
annotated target: t1 developmentally_induced_by t2 if there is a process of organ induction (GO:0001759) with t1 and t2 as interacting participants. t2 causes t1 to change its fate from a precursor tissue type T to T', where T' develops_from T.
数据库_交叉_引用: GO:0001759

developmentally induces
type: ObjectProperty
sub property of: developmentally succeeded by
sub property of: has potential to developmentally induce
has curation status: IAO_0000125
definition: Inverse of developmentally induced by
definition editor: Chris Mungall

developmentally preceded by
type: ObjectProperty
sub property of: developmentally related to
inverse of: developmentally succeeded by
domain: continuant
range: continuant
has curation status: IAO_0000125
definition: Candidate definition: x developmentally related to y if and only if there exists some developmental process (GO:0032502) p such that x and y both participates in p, and x is the output of p and y is the input of p
editor note: false
definition editor: Chris Mungall
curator note: In general you should not use this relation to make assertions - use one of the more specific relations below this one
数据库_交叉_引用: RO:0002258
有_obo_命名空间: uberon
id: developmentally_preceded_by
shorthand: developmentally_preceded_by
comment: This relation groups together various other developmental relations. It is fairly generic, encompassing induction, developmental contribution and direct and transitive develops from

acts upstream of
type: ObjectProperty
sub property of: acts upstream of or within
property chain axiom: enables
property chain axiom: causally upstream of
example of usage: A faulty traffic light (material entity) whose malfunctioning (a process) is causally upstream of a traffic collision (a process): the traffic light acts upstream of the collision.
definition: c acts upstream of p if and only if c enables some f that is involved in p' and p' occurs chronologically before p, is not part of p, and affects the execution of p. c is a material entity and f, p, p' are processes.

acts upstream of or within
type: ObjectProperty
sub property of: causal agent in process
property chain axiom: enables
property chain axiom: causally upstream of or within
example of usage: A gene product that has some activity, where that activity may be a part of a pathway or upstream of the pathway.
definition: c acts upstream of or within p if c is enables f, and f is causally upstream of or within p. c is a material entity and p is an process.
has_related_synonym: affects

developmentally_replaces
type: ObjectProperty
sub property of: developmentally preceded by
has curation status: IAO_0000125
definition: x developmentally replaces y if and only if there is some developmental process that causes x to move or to cease to exist, and for the site that was occupied by x to become occupied by y, where y either comes into existence in this site or moves to this site from somewhere else
editor note: This relation is intended for cases such as when we have a bone element replacing its cartilage element precursor. Currently most AOs represent this using 'develops from'. We need to decide whether 'develops from' will be generic and encompass replacement, or whether we need a new name for a generic relation that encompasses replacement and development-via-cell-lineage
definition editor: Chris Mungall
alternative term: replaces
数据库_交叉_引用: RO:0002285
有_obo_命名空间: uberon
id: developmentally_replaces
shorthand: developmentally_replaces
label: developmentally replaces

developmentally succeeded by
type: ObjectProperty
sub property of: has developmental potential involving
has curation status: IAO_0000125
definition: Inverse of developmentally preceded by
definition editor: Chris Mungall

part of developmental precursor of
type: ObjectProperty
sub property of: developmentally succeeded by
property chain axiom: part of
property chain axiom: directly develops into
example of usage: 'hypopharyngeal eminence' SubClassOf 'part of precursor of' some tongue
has curation status: IAO_0000125
definition editor: Chris Mungall

results in developmental progression of
type: ObjectProperty
sub property of: developmentally related to
domain: biological_process
range: connected anatomical structure
has curation status: IAO_0000125
definition: p results in the developmental progression of s iff p is a developmental process and s is an anatomical structure and p causes s to undergo a change in state at some point along its natural developmental cycle (this cycle starts with its formation, through the mature structure, and ends with its loss).
editor note: This property and its subproperties are being used primarily for the definition of GO developmental processes. The property hierarchy mirrors the core GO hierarchy. In future we may be able to make do with a more minimal set of properties, but due to the way GO is currently structured we require highly specific relations to avoid incorrect entailments. To avoid this, the corresponding genus terms in GO should be declared mutually disjoint.
definition editor: Chris Mungall
shorthand: results_in_developmental_progression_of

results in formation of
type: ObjectProperty
sub property of: has output
sub property of: results in developmental progression of
inverse of: formed as result of
example of usage: an annotation of gene X to anatomical structure formation with results_in_formation_of UBERON:0000007 (pituitary gland) means that at the beginning of the process a pituitary gland does not exist and at the end of the process a pituitary gland exists.
example of usage: every "endocardial cushion formation" (GO:0003272) results_in_formation_of some "endocardial cushion" (UBERON:0002062)
has curation status: IAO_0000125
definition editor: Chris Mungall
definition source: GOC:mtg_berkeley_2013
shorthand: results_in_formation_of

causally upstream of, positive effect
type: ObjectProperty
sub property of: causally upstream of
sub property of: causally upstream of or within, positive effect
is positive form of: causally upstream of
creator: cjm
comment: holds between x and y if and only if x is causally upstream of y and the progression of x increases the frequency, rate or extent of y

causally upstream of, negative effect
type: ObjectProperty
sub property of: causally upstream of
sub property of: causally upstream of or within, negative effect
is negative form of: causally upstream of
creator: cjm
comment: holds between x and y if and only if x is causally upstream of y and the progression of x decreases the frequency, rate or extent of y

inheres in part of
type: ObjectProperty
sub property of: depends on
property chain axiom: inheres in
property chain axiom: part of
definition: q inheres in part of w if and only if there exists some p such that q inheres in p and p part of w.
editor note: Because part_of is transitive, inheres in is a sub-relation of inheres in part of
definition editor: Chris Mungall
definition source: http://www.ncbi.nlm.nih.gov/pubmed/20064205
temporal interpretation: RO_0001901

Axiom
annotated source: inheres in part of
annotated property: propertyChainAxiom
annotated target: inheres in
annotated target: part of
RO_0002582: true

mereotopologically related to
type: ObjectProperty
definition: A mereological relationship or a topological relationship
definition editor: Chris Mungall
curator note: Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving parthood or connectivity relationships
temporal interpretation: RO_0001901

developmentally related to
type: ObjectProperty
definition: A relationship that holds between entities participating in some developmental process (GO:0032502)
definition editor: Chris Mungall
curator note: Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving organismal development

enables
type: ObjectProperty
sub property of: capable_of
inverse of: enabled by
property chain axiom: has_part
property chain axiom: has component activity
example of usage: a particular instances of akt-2 enables some instance of protein kinase activity
definition editor: Chris Mungall
alternative term: catalyzes
alternative term: executes
alternative term: has
alternative term: is catalyzing
alternative term: is executing
curator note: This relation differs from the parent relation 'capable of' in that the parent is weaker and only expresses a capability that may not be actually realized, whereas this relation is always realized.
curator note: This relation is currently used experimentally by the Gene Ontology Consortium. It may not be stable and may be obsoleted at some future time.

functionally related to
type: ObjectProperty
definition: A grouping relationship for any relationship directly involving a function, or that holds because of a function of one of the related entities.
definition editor: Chris Mungall
curator note: This is a grouping relation that collects relations used for the purpose of connecting structure and function
数据库_交叉_引用: RO:0002328
有_obo_命名空间: uberon
id: functionally_related_to
shorthand: functionally_related_to

part of structure that is capable of
type: ObjectProperty
sub property of: functionally related to
property chain axiom: part of
property chain axiom: capable_of
definition: this relation holds between c and p when c is part of some c', and c' is capable of p.
definition editor: Chris Mungall
alternative term: false
数据库_交叉_引用: RO:0002329
有_obo_命名空间: uberon
id: part_of_structure_that_is_capable_of
shorthand: part_of_structure_that_is_capable_of

Axiom
annotated source: part of structure that is capable of
annotated property: propertyChainAxiom
annotated target: part of
annotated target: capable_of
is a defining property chain axiom: true

involved_in
type: ObjectProperty
sub property of: actively participates in
sub property of: involved in or involved in regulation of
property chain axiom: enables
property chain axiom: part of
definition: c involved_in p if and only if c enables some process p', and p' is part of p
definition editor: Chris Mungall
alternative term: actively involved in
alternative term: enables part of
数据库_交叉_引用: RO:0002331
有_obo_命名空间: protein
id: involved_in
is transitive: false
shorthand: involved_in
label: involved in

enabled by
type: ObjectProperty
sub property of: has participant
sub property of: functionally related to
definition: inverse of enables
definition editor: Chris Mungall

regulated by
type: ObjectProperty
sub property of: causally downstream of or within
type: TransitiveProperty
domain: process
range: process
definition: inverse of regulates
definition editor: Chris Mungall
OBO foundry unique label: regulated by (processual)
in_subset: defined by inverse

negatively regulated by
type: ObjectProperty
sub property of: regulated by
definition: inverse of negatively regulates
definition editor: Chris Mungall
in_subset: defined by inverse

positively regulated by
type: ObjectProperty
sub property of: regulated by
definition: inverse of positively regulates
definition editor: Chris Mungall
in_subset: defined by inverse

member of
type: ObjectProperty
equivalent property:
  inverse of: has member
sub property of: part of
inverse of: has member
example of usage: An organism that is a member of a population of organisms
definition: is member of is a mereological relation between a item and a collection.
alternative term: is member of
alternative term: member part of
definition source: SIO
temporal interpretation: RO_0001901
数据库_交叉_引用: RO:0002350
有_obo_命名空间: uberon
id: member_of
shorthand: member_of

has member
type: ObjectProperty
equivalent property:
  inverse of: member of
sub property of: has_part
type: IrreflexiveProperty
definition: has member is a mereological relation between a collection and an item.
definition source: SIO
temporal interpretation: RO_0001901
数据库_交叉_引用: RO:0002351
有_obo_命名空间: uberon
id: has_member
shorthand: has_member

input of
type: ObjectProperty
sub property of: participates_in
sub property of: functionally related to
definition: inverse of has input
definition editor: Chris Mungall
数据库_交叉_引用: RO:0002352
有_obo_命名空间: uberon
id: input_of
in_subset: defined by inverse
in_subset: eco subset
shorthand: input_of

output_of
type: ObjectProperty
sub property of: participates_in
sub property of: functionally related to
definition: inverse of has output
definition editor: Chris Mungall
数据库_交叉_引用: RO:0002353
有_obo_命名空间: protein
有_obo_命名空间: uberon
id: output_of
in_subset: defined by inverse
in_subset: eco subset
is transitive: false
shorthand: output_of
label: output of

formed as result of
type: ObjectProperty
sub property of: output_of
definition editor: Chris Mungall

attaches_to
type: ObjectProperty
sub property of: connected to
sub property of: connects
sub property of: attaches_to_part_of
type: SymmetricProperty
definition: a is attached to b if and only if a and b are discrete objects or object parts, and there are physical connections between a and b such that a force pulling a will move b, or a force pulling b will move a
definition editor: Chris Mungall
OBO foundry unique label: attached to (anatomical structure to anatomical structure)
数据库_交叉_引用: RO:0002371
有_obo_命名空间: uberon
id: attaches_to
in_subset: eco subset
shorthand: attaches_to
label: attached to

has_muscle_insertion
type: ObjectProperty
sub property of: attaches_to
sub property of: biomechanically related to
domain: connected anatomical structure
definition: m has_muscle_insertion s iff m is attaches_to s, and it is the case that when m contracts, s moves. Insertions are usually connections of muscle via tendon to bone.
definition editor: Chris Mungall
definition source: Wikipedia:Insertion_(anatomy)
数据库_交叉_引用: RO:0002373
有_obo_命名空间: uberon
id: has_muscle_insertion
shorthand: has_muscle_insertion
comment: The insertion is the point of attachment of a muscle that moves the most when the muscle shortens, or the most distal end of limb muscles
label: has muscle insertion

Axiom
annotated source: has_muscle_insertion
annotated property: domain
annotated target: connected anatomical structure
editor note: We need to import uberon muscle into RO to use as a stricter domain constraint

Axiom
annotated source: has_muscle_insertion
annotated property: definition
annotated target: m has_muscle_insertion s iff m is attaches_to s, and it is the case that when m contracts, s moves. Insertions are usually connections of muscle via tendon to bone.
数据库_交叉_引用: Insertion (anatomy)

in branching relationship with
type: ObjectProperty
sub property of: part of
sub property of: mereotopologically related to
domain: material entity
range: material entity
has curation status: IAO_0000428
definition: A relationship that holds between two material entities in a system of connected structures, where the branching relationship holds based on properties of the connecting network.
definition editor: Chris Mungall
curator note: Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving branching relationships
curator note: This relation can be used for geographic features (e.g. rivers) as well as anatomical structures (plant branches and roots, leaf veins, animal veins, arteries, nerves)

tributary_of
type: ObjectProperty
sub property of: in branching relationship with
example of usage: Deschutes River tributary_of Columbia River
example of usage: inferior epigastric vein tributary_of external iliac vein
has curation status: IAO_0000428
definition: x tributary_of y if and only if x a channel for the flow of a substance into y, where y is larger than x. If x and y are hydrographic features, then y is the main stem of a river, or a lake or bay, but not the sea or ocean. If x and y are anatomical, then y is a vein.
definition editor: Chris Mungall
alternative term: drains into
alternative term: drains to
alternative term: tributary channel of
definition source: http://en.wikipedia.org/wiki/Tributary
definition source: http://www.medindia.net/glossary/venous_tributary.htm
curator note: This relation can be used for geographic features (e.g. rivers) as well as anatomical structures (veins, arteries)
数据库_交叉_引用: RO:0002376
有_obo_命名空间: uberon
has_related_synonym: drains into
id: tributary_of
in_subset: eco subset
shorthand: tributary_of
label: tributary of

Axiom
annotated source: tributary_of
annotated property: has_related_synonym
annotated target: drains into
数据库_交叉_引用: dbpowl:drainsTo

spatially coextensive with
type: ObjectProperty
sub property of: overlaps
property chain axiom: located_in
property chain axiom:
  inverse of: located_in
example of usage: A lump of clay and a statue
definition: x spatially_coextensive_with y if and inly if x and y have the same location
definition editor: Chris Mungall
curator note: This relation is added for formal completeness. It is unlikely to be used in many practical scenarios

branching_part_of
type: ObjectProperty
sub property of: part of
sub property of: in branching relationship with
inverse of: has branching part
range: Restriction
  on property: bearer of
  some values from: PATO_0000402
has curation status: IAO_0000428
definition: x is a branching part of y if and only if x is part of y and x is connected directly or indirectly to the main stem of y
editor note: we need to check if FMA branch_of implies part_of. the relation we intend to use here should - for example, see vestibulocochlear nerve
definition editor: Chris Mungall
数据库_交叉_引用: RO:0002380
有_obo_命名空间: uberon
id: branching_part_of
in_subset: eco subset
shorthand: branching_part_of
label: branching part of

has developmental potential involving
type: ObjectProperty
sub property of: developmentally related to
domain: anatomical entity
range: anatomical entity
has curation status: IAO_0000428
definition: x has developmental potential involving y iff x is capable of a developmental process with output y. y may be the successor of x, or may be a different structure in the vicinity (as for example in the case of developmental induction).
definition editor: Chris Mungall

has potential to developmentally contribute to
type: ObjectProperty
sub property of: has developmental potential involving
has curation status: IAO_0000428
definition: x has potential to developmentrally contribute to y iff x developmentally contributes to y or x is capable of developmentally contributing to y
definition editor: Chris Mungall
数据库_交叉_引用: RO:0002385
有_obo_命名空间: uberon
id: has_potential_to_developmentally_contribute_to
shorthand: has_potential_to_developmentally_contribute_to

has potential to developmentally induce
type: ObjectProperty
sub property of: has developmental potential involving
has curation status: IAO_0000428
definition: x has potential to developmentally induce y iff x developmentally induces y or x is capable of developmentally inducing y
definition editor: Chris Mungall

has potential to develop into
type: ObjectProperty
sub property of: has developmental potential involving
has curation status: IAO_0000428
definition: x has the potential to develop into y iff x develops into y or if x is capable of developing into y
definition editor: Chris Mungall
数据库_交叉_引用: RO:0002387
有_obo_命名空间: uberon
id: has_potential_to_develop_into
shorthand: has_potential_to_develop_into

has potential to directly develop into
type: ObjectProperty
sub property of: has potential to develop into
has curation status: IAO_0000428
definition: x has potential to directly develop into y iff x directly develops into y or x is capable of directly developing into y
definition editor: Chris Mungall
数据库_交叉_引用: RO:0002388
有_obo_命名空间: uberon
id: has_potential_to_directly_develop_into
shorthand: has_potential_to_directly_develop_into

causally downstream of
type: ObjectProperty
sub property of: preceded_by
sub property of: causally downstream of or within
inverse of: causally upstream of
has curation status: IAO_0000428
definition: inverse of upstream of
definition editor: Chris Mungall

immediately causally downstream of
type: ObjectProperty
sub property of: immediately_preceded_by
sub property of: causally downstream of
inverse of: immediately causally upstream of
has curation status: IAO_0000428
definition editor: Chris Mungall

causally related to
type: ObjectProperty
has curation status: IAO_0000428
definition: This relation groups causal relations between material entities and causal relations between processes
editor note: This branch of the ontology deals with causal relations between entities. It is divided into two branches: causal relations between occurrents/processes, and causal relations between material entities. We take an 'activity flow-centric approach', with the former as primary, and define causal relations between material entities in terms of causal relations between occurrents. To define causal relations in an activity-flow type network, we make use of 3 primitives: * Temporal: how do the intervals of the two occurrents relate? * Is the causal relation regulatory? * Is the influence positive or negative The first of these can be formalized in terms of the Allen Interval Algebra. Informally, the 3 bins we care about are 'direct', 'indirect' or overlapping. Note that all causal relations should be classified under a RO temporal relation (see the branch under 'temporally related to'). Note that all causal relations are temporal, but not all temporal relations are causal. Two occurrents can be related in time without being causally connected. We take causal influence to be primitive, elucidated as being such that has the upstream changed, some qualities of the donwstream would necessarily be modified. For the second, we consider a relationship to be regulatory if the system in which the activities occur is capable of altering the relationship to achieve some objective. This could include changing the rate of production of a molecule. For the third, we consider the effect of the upstream process on the output(s) of the downstream process. If the level of output is increased, or the rate of production of the output is increased, then the direction is increased. Direction can be positive, negative or neutral or capable of either direction. Two positives in succession yield a positive, two negatives in succession yield a positive, otherwise the default assumption is that the net effect is canceled and the influence is neutral. Each of these 3 primitives can be composed to yiel…
definition editor: Chris Mungall
curator note: Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect.

causally upstream of
type: ObjectProperty
sub property of: precedes
sub property of: causally upstream of or within
type: TransitiveProperty
has curation status: IAO_0000428
definition: p is causally upstream of q if and only if p precedes q and p and q are linked in a causal chain
definition editor: Chris Mungall

immediately causally upstream of
type: ObjectProperty
sub property of: immediately precedes
sub property of: causally upstream of
has curation status: IAO_0000428
definition: p is immediately causally upstream of q iff both (a) p immediately precedes q and (b) p is causally upstream of q. In addition, the output of p must be an input of q.
definition editor: Chris Mungall
is direct form of: causally upstream of

causally upstream of or within
type: ObjectProperty
sub property of: causal relation between processes
inverse of: causally downstream of or within
type: TransitiveProperty
definition: p 'causally upstream or within' q iff (1) the end of p is before the end of q and (2) the execution of p exerts some causal influence over the outputs of q; i.e. if p was abolished or the outputs of p were to be modified, this would necessarily affect q.
editor note: We would like to make this disjoint with 'preceded by', but this is prohibited in OWL2
definition editor: Chris Mungall
alternative term: influences (processual)
has_related_synonym: affects

causally downstream of or within
type: ObjectProperty
sub property of: causal relation between processes
type: TransitiveProperty
definition: inverse of causally upstream of or within
definition editor: Chris Mungall
definition source: causal-relations
in_subset: defined by inverse

involved in regulation of
type: ObjectProperty
sub property of: acts upstream of
sub property of: involved in or involved in regulation of
property chain axiom: enables
property chain axiom: regulates
property chain axiom: involved_in
definition: c involved in regulation of p if c is involved in some p' and p' regulates some p
definition editor: Chris Mungall

involved in positive regulation of
type: ObjectProperty
sub property of: involved in regulation of
property chain axiom: enables
property chain axiom: positively regulates
property chain axiom: involved_in
definition: c involved in regulation of p if c is involved in some p' and p' positively regulates some p
definition editor: Chris Mungall
is positive form of: involved in regulation of

involved in negative regulation of
type: ObjectProperty
sub property of: involved in regulation of
property chain axiom: enables
property chain axiom: negatively regulates
property chain axiom: involved_in
definition: c involved in regulation of p if c is involved in some p' and p' negatively regulates some p
definition editor: Chris Mungall
is negative form of: involved in regulation of

involved in or involved in regulation of
type: ObjectProperty
sub property of: acts upstream of or within
sub property of: functionally related to
sub property of: causal agent in process
definition: c involved in or regulates p if and only if either (i) c is involved in p or (ii) c is involved in regulation of p
editor note: OWL does not allow defining object properties via a Union
definition editor: Chris Mungall
alternative term: involved in or reguates

is active in
type: ObjectProperty
sub property of: overlaps
sub property of: functionally related to
property chain axiom: enables
property chain axiom: occurs in
example of usage: A protein that enables activity in a cytosol.
definition: c executes activity in d if and only if c enables p and p occurs_in d. Assuming no action at a distance by gene products, if a gene product enables (is capable of) a process that occurs in some structure, it must have at least some part in that structure.
definition editor: Chris Mungall
alternative term: executes activity in
has_exact_synonym: enables activity in

Axiom
annotated source: is active in
annotated property: propertyChainAxiom
annotated target: enables
annotated target: occurs in
is a defining property chain axiom: true

Axiom
annotated source: is active in
annotated property: definition
annotated target: c executes activity in d if and only if c enables p and p occurs_in d. Assuming no action at a distance by gene products, if a gene product enables (is capable of) a process that occurs in some structure, it must have at least some part in that structure.
数据库_交叉_引用: GOC:cjm
数据库_交叉_引用: GOC:dos

contributes to morphology of
type: ObjectProperty
sub property of: overlaps
definition: p contributes to morphology of w if and only if a change in the morphology of p entails a change in the morphology of w. Examples: every skull contributes to morphology of the head which it is a part of. Counter-example: nuclei do not generally contribute to the morphology of the cell they are part of, as they are buffered by cytoplasm.
definition editor: Chris Mungall
数据库_交叉_引用: RO:0002433
有_obo_命名空间: uberon
id: contributes_to_morphology_of
shorthand: contributes_to_morphology_of

interacts with
type: ObjectProperty
type: SymmetricProperty
domain: material entity
range: material entity
definition: A relationship that holds between two entities in which the processes executed by the two entities are causally connected.
editor note: Considering relabeling as 'pairwise interacts with'
editor note: This relation and all sub-relations can be applied to either (1) pairs of entities that are interacting at any moment of time (2) populations or species of entity whose members have the disposition to interact (3) classes whose members have the disposition to interact.
definition editor: Chris Mungall
curator note: Note that this relationship type, and sub-relationship types may be redundant with process terms from other ontologies. For example, the symbiotic relationship hierarchy parallels GO. The relations are provided as a convenient shortcut. Consider using the more expressive processual form to capture your data. In the future, these relations will be linked to their cognate processes through rules.
has_exact_synonym: in pairwise interaction with
in_subset: eco subset

molecularly interacts with
type: ObjectProperty
sub property of: interacts with
type: SymmetricProperty
definition: An interaction relationship in which the two partners are molecular entities that directly physically interact with each other for example via a stable binding interaction or a brief interaction during which one modifies the other.
definition editor: Chris Mungall
alternative term: binds
alternative term: molecularly binds with

phosphorylates
type: ObjectProperty
sub property of: molecularly interacts with
editor note: Axiomatization to GO to be added later
definition editor: Chris Mungall
alternative term: An interaction relation between x and y in which x catalyzes a reaction in which a phosphate group is added to y.

activity directly regulates activity of
type: ObjectProperty
sub property of: molecularly interacts with
sub property of: causally influences
property chain axiom: enables
property chain axiom: regulates
property chain axiom: enabled by
definition: Holds between molecular entities A and B where A can physically interact with B and in doing so regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A regulates the kinase activity of B.
definition editor: Chris Mungall
has_exact_synonym: molecularly controls

activity directly negatively regulates activity of
type: ObjectProperty
sub property of: activity directly regulates activity of
property chain axiom: enables
property chain axiom: directly negatively regulates
property chain axiom: enabled by
definition: Holds between molecular entities A and B where A can physically interact with B and in doing so negatively regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A negatively regulates the kinase activity of B.
definition editor: Chris Mungall
alternative term: inhibits
has_exact_synonym: molecularly decreases activity of

activity directly positively regulates activity of
type: ObjectProperty
sub property of: activity directly regulates activity of
property chain axiom: enables
property chain axiom: directly positively regulates
property chain axiom: enabled by
definition: Holds between molecular entities A and B where A can physically interact with B and in doing so positively regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A positively regulates the kinase activity of B.
definition editor: Chris Mungall
alternative term: activates
has_exact_synonym: molecularly increases activity of

helper property (not for use in curation)
type: ObjectProperty
definition editor: Chris Mungall
curator note: This property or its subproperties is not to be used directly. These properties exist as helper properties that are used to support OWL reasoning.

is symbiosis
type: ObjectProperty
sub property of: interaction relation helper property
definition editor: Chris Mungall

composed primarily of
type: ObjectProperty
sub property of: has_part
domain: material entity
range: material entity
example of usage: 'otolith organ' SubClassOf 'composed primarily of' some 'calcium carbonate'
definition: x composed_primarily_of y if and only if more than half of the mass of x is made from y or units of the same type as y.
definition: x composed_primarily_of y iff: more than half of the mass of x is made from parts of y
definition editor: Chris Mungall
definition source: http://www.ncbi.nlm.nih.gov/pubmed/22293552
temporal interpretation: RO_0001901
数据库_交叉_引用: RO:0002473
有_obo_命名空间: uberon
id: composed_primarily_of
in_subset: eco subset
shorthand: composed_primarily_of

has part that occurs in
type: ObjectProperty
domain: occurrent
range: independent continuant
property chain axiom: has_part
property chain axiom: occurs in
definition: p has part that occurs in c if and only if there exists some p1, such that p has_part p1, and p1 occurs in c.
definition editor: Chris Mungall
in_subset: eco subset

Axiom
annotated source: has part that occurs in
annotated property: propertyChainAxiom
annotated target: has_part
annotated target: occurs in
is a defining property chain axiom: true

is kinase activity
type: ObjectProperty
sub property of: molecular interaction relation helper property
definition editor: Chris Mungall

relation between structure and stage
type: ObjectProperty
domain: continuant
domain: Class
  union of: material anatomical entity
  union of: immaterial anatomical entity
range: occurrent
definition editor: Chris Mungall
curator note: Do not use this relation directly. It is ended as a grouping for a diverse set of relations, typically connecting an anatomical entity to a biological process or developmental stage.

existence starts during
type: ObjectProperty
sub property of: existence overlaps
sub property of: existence starts during or after
property chain axiom: part of
definition: Relation between continuant c and occurrent s, such that every instance of c comes into existing during some s.
definition: x existence starts during y if and only if the time point at which x starts is after or equivalent to the time point at which y starts and before or equivalent to the time point at which y ends. Formally: x existence starts during y iff α(x) >= α(y) & α(x) <= ω(y).
definition editor: Chris Mungall
数据库_交叉_引用: RO:0002488
has_exact_synonym: begins_to_exist_during
有_obo_命名空间: uberon
id: existence_starts_during
shorthand: existence_starts_during

Axiom
annotated source: existence starts during
annotated property: definition
annotated target: Relation between continuant c and occurrent s, such that every instance of c comes into existing during some s.
数据库_交叉_引用: https://orcid.org/0000-0002-6601-2165

existence starts with
type: ObjectProperty
sub property of: existence starts during
domain: UBERON_0001062
range: UBERON_0000105
definition: Relation between continuant and occurrent, such that c comes into existence at the start of p.
definition: x starts ends with y if and only if the time point at which x starts is equivalent to the time point at which y starts. Formally: x existence starts with y iff α(x) = α(y).
definition editor: Chris Mungall
数据库_交叉_引用: RO:0002489
有_obo_命名空间: uberon
id: existence_starts_with
shorthand: existence_starts_with

Axiom
annotated source: existence starts with
annotated property: definition
annotated target: Relation between continuant and occurrent, such that c comes into existence at the start of p.
数据库_交叉_引用: https://orcid.org/0000-0002-6601-2165

existence overlaps
type: ObjectProperty
sub property of: relation between structure and stage
definition: x existence overlaps y if and only if either (a) the start of x is part of y or (b) the end of x is part of y. Formally: x existence starts and ends during y iff (α(x) >= α(y) & α(x) <= ω(y)) OR (ω(x) <= ω(y) & ω(x) >= α(y))
definition editor: Chris Mungall
comment: The relations here were created based on work originally by Fabian Neuhaus and David Osumi-Sutherland. The work has not yet been vetted and errors in definitions may have occurred during transcription.

existence ends during
type: ObjectProperty
sub property of: existence overlaps
sub property of: existence ends during or before
property chain axiom: part of
definition: Relation between continuant c and occurrent s, such that every instance of c ceases to exist during some s, if it does not die prematurely.
definition: x existence ends during y if and only if the time point at which x ends is before or equivalent to the time point at which y ends and after or equivalent to the point at which y starts. Formally: x existence ends during y iff ω(x) <= ω(y) and ω(x) >= α(y).
definition editor: Chris Mungall
数据库_交叉_引用: RO:0002492
has_exact_synonym: ceases_to_exist_during
有_obo_命名空间: uberon
id: existence_ends_during
shorthand: existence_ends_during
comment: The relations here were created based on work originally by Fabian Neuhaus and David Osumi-Sutherland. The work has not yet been vetted and errors in definitions may have occurred during transcription.

Axiom
annotated source: existence ends during
annotated property: definition
annotated target: Relation between continuant c and occurrent s, such that every instance of c ceases to exist during some s, if it does not die prematurely.
数据库_交叉_引用: https://orcid.org/0000-0002-6601-2165

existence ends with
type: ObjectProperty
sub property of: existence ends during
domain: UBERON_0001062
range: UBERON_0000105
definition: Relation between continuant and occurrent, such that c ceases to exist at the end of p.
definition: x existence ends with y if and only if the time point at which x ends is equivalent to the time point at which y ends. Formally: x existence ends with y iff ω(x) = ω(y).
definition editor: Chris Mungall
数据库_交叉_引用: RO:0002493
有_obo_命名空间: uberon
id: existence_ends_with
shorthand: existence_ends_with
comment: The relations here were created based on work originally by Fabian Neuhaus and David Osumi-Sutherland. The work has not yet been vetted and errors in definitions may have occurred during transcription.

Axiom
annotated source: existence ends with
annotated property: definition
annotated target: Relation between continuant and occurrent, such that c ceases to exist at the end of p.
数据库_交叉_引用: https://orcid.org/0000-0002-6601-2165

transformation of
type: ObjectProperty
sub property of: develops_from
type: TransitiveProperty
definition: x transformation of y if x is the immediate transformation of y, or is linked to y through a chain of transformation relationships
definition editor: Chris Mungall
数据库_交叉_引用: RO:0002494
has_exact_synonym: transforms from
有_obo_命名空间: uberon
id: transformation_of
shorthand: transformation_of

Axiom
annotated source: transformation of
annotated property: has_exact_synonym
annotated target: transforms from
数据库_交叉_引用: SIO:000657

immediate transformation of
type: ObjectProperty
sub property of: directly_develops_from
sub property of: transformation of
definition: x immediate transformation of y iff x immediately succeeds y temporally at a time boundary t, and all of the matter present in x at t is present in y at t, and all the matter in y at t is present in x at t
definition editor: Chris Mungall
is direct form of: transformation of
数据库_交叉_引用: RO:0002495
has_exact_synonym: direct_transformation_of
has_exact_synonym: immediately transforms from
有_obo_命名空间: uberon
id: immediate_transformation_of
shorthand: immediate_transformation_of

Axiom
annotated source: immediate transformation of
annotated property: has_exact_synonym
annotated target: direct_transformation_of
数据库_交叉_引用: https://orcid.org/0000-0002-6601-2165

Axiom
annotated source: immediate transformation of
annotated property: has_exact_synonym
annotated target: immediately transforms from
数据库_交叉_引用: SIO:000658

existence starts during or after
type: ObjectProperty
sub property of: relation between structure and stage
property chain axiom: part of
property chain axiom: developmentally preceded by
property chain axiom: preceded_by
definition: x existence starts during or after y if and only if the time point at which x starts is after or equivalent to the time point at which y starts. Formally: x existence starts during or after y iff α (x) >= α (y).
definition editor: Chris Mungall
数据库_交叉_引用: RO:0002496
有_obo_命名空间: uberon
id: existence_starts_during_or_after
shorthand: existence_starts_during_or_after
comment: The relations here were created based on work originally by Fabian Neuhaus and David Osumi-Sutherland. The work has not yet been vetted and errors in definitions may have occurred during transcription.

existence ends during or before
type: ObjectProperty
sub property of: relation between structure and stage
property chain axiom: part of
property chain axiom: developmentally succeeded by
property chain axiom: precedes
definition: x existence ends during or before y if and only if the time point at which x ends is before or equivalent to the time point at which y ends.
definition editor: Chris Mungall
数据库_交叉_引用: RO:0002497
有_obo_命名空间: uberon
id: existence_ends_during_or_before
shorthand: existence_ends_during_or_before
comment: The relations here were created based on work originally by Fabian Neuhaus and David Osumi-Sutherland. The work has not yet been vetted and errors in definitions may have occurred during transcription.

causal agent in process
type: ObjectProperty
sub property of: causal relation between material entity and a process
inverse of: process has causal agent
definition: A relationship between a material entity and a process where the material entity has some causal role that influences the process
definition source: causal-relations

causal relation between processes
type: ObjectProperty
sub property of: causally related to
domain: occurrent
range: occurrent
definition: p is causally related to q if and only if p or any part of p and q or any part of q are linked by a chain of events where each event pair is one of direct activation or direct inhibition. p may be upstream, downstream, part of or a container of q.
definition editor: Chris Mungall
definition source: causal-relations
curator note: Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect.

depends on
type: ObjectProperty
definition editor: Chris Mungall

causal relation between material entities
type: ObjectProperty
sub property of: causally related to
domain: material entity
range: material entity
editor note: The intent is that the process branch of the causal property hierarchy is primary (causal relations hold between occurrents/processes), and that the material branch is defined in terms of the process branch
definition editor: Chris Mungall
definition source: causal-relations
curator note: Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect.

has skeleton
type: ObjectProperty
sub property of: has_part
inverse of: skeleton of
type: AsymmetricProperty
type: IrreflexiveProperty
domain: connected anatomical structure
domain: UBERON_0000475
range: material anatomical entity
range: UBERON_0010912
example of usage: Forelimb SubClassOf has_skeleton some 'Forelimb skeleton'
definition: A relation between a segment or subdivision of an organism and the maximal subdivision of material entities that provides structural support for that segment or subdivision.
definition: A relation between a subdivision of an organism and the single subdivision of skeleton that provides structural support for that subdivision.
definition editor: Chris Mungall
alternative term: has supporting framework
curator note: The skeleton of a structure may be a true skeleton (for example, the bony skeleton of a hand) or any kind of support framework (the hydrostatic skeleton of a sea star, the exoskeleton of an insect, the cytoskeleton of a cell).
数据库_交叉_引用: RO:0002551
有_obo_命名空间: uberon
has_related_synonym: has sekeletal support
has_related_synonym: has supporting framework
id: has_skeleton
shorthand: has_skeleton

Axiom
annotated source: has skeleton
annotated property: range
annotated target: material anatomical entity
editor note: This should be to a more restricted class, but not the Uberon class may be too restricted since it is a composition-based definition of skeleton rather than functional.

Axiom
annotated source: has skeleton
annotated property: definition
annotated target: A relation between a subdivision of an organism and the single subdivision of skeleton that provides structural support for that subdivision.
数据库_交叉_引用: http://orcid.org/0000-0002-6601-2165

causally influenced by
type: ObjectProperty
sub property of: causal relation between material entities
inverse of: causally influences
definition editor: Chris Mungall
definition source: causal-relations
OBO foundry unique label: causally influenced by (material entity to material entity)

interaction relation helper property
type: ObjectProperty
sub property of: helper property (not for use in curation)
definition editor: Chris Mungall

molecular interaction relation helper property
type: ObjectProperty
sub property of: interaction relation helper property
definition editor: Chris Mungall

causally influences
type: ObjectProperty
sub property of: causal relation between material entities
property chain axiom: enables
property chain axiom: causally upstream of
property chain axiom: has input
property chain axiom: enabled by
definition: Holds between materal entities a and b if the activity of a is causally upstream of the activity of b, or causally upstream of a an activity that modifies b
definition editor: Chris Mungall
definition source: causal-relations
OBO foundry unique label: causally influences (material entity to material entity)

biomechanically related to
type: ObjectProperty
sub property of: functionally related to
domain: connected anatomical structure
range: connected anatomical structure
definition: A relation that holds between elements of a musculoskeletal system or its analogs.
definition editor: Chris Mungall
curator note: Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving the biomechanical processes.

has branching part
type: ObjectProperty
sub property of: in branching relationship with
type: TransitiveProperty
definition: inverse of branching part of
definition editor: Chris Mungall
数据库_交叉_引用: RO:0002569
有_obo_命名空间: uberon
id: has_branching_part
in_subset: defined by inverse
in_subset: eco subset
shorthand: has_branching_part

lumen of
type: ObjectProperty
sub property of: part of
range: material entity
definition: x lumen_of y iff x is the space or substance that is part of y and does not cross any of the inner membranes or boundaries of y that is maximal with respect to the volume of the convex hull.
definition editor: Chris Mungall
definition source: GOC:cjm
数据库_交叉_引用: RO:0002571
有_obo_命名空间: uberon
id: lumen_of
in_subset: eco subset
shorthand: lumen_of

luminal space of
type: ObjectProperty
sub property of: part of
sub property of: lumen of
domain: immaterial entity
definition: s is luminal space of x iff s is lumen_of x and s is an immaterial entity
definition editor: Chris Mungall
数据库_交叉_引用: RO:0002572
有_obo_命名空间: uberon
id: luminal_space_of
in_subset: eco subset
shorthand: luminal_space_of

skeleton of
type: ObjectProperty
sub property of: part of
domain: connected anatomical structure
range: connected anatomical structure
definition: inverse of has skeleton
definition editor: Chris Mungall
数据库_交叉_引用: RO:0002576
有_obo_命名空间: uberon
id: skeleton_of
in_subset: defined by inverse
shorthand: skeleton_of

directly regulates
type: ObjectProperty
sub property of: regulates
sub property of: immediately causally upstream of
definition: Process(P1) directly regulates process(P2) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2.
definition editor: Chris Mungall
definition source: causal-relations
OBO foundry unique label: directly regulates (processual)
is direct form of: regulates

has part structure that is capable of
type: ObjectProperty
sub property of: functionally related to
sub property of: causal relation between material entity and a process
property chain axiom: has_part
property chain axiom: capable_of
example of usage: gland SubClassOf 'has part structure that is capable of' some 'secretion by cell'
definition: s 'has part structure that is capable of' p if and only if there exists some part x such that s 'has part' x and x 'capable of' p
definition editor: Chris Mungall

causal relation between material entity and a process
type: ObjectProperty
sub property of: causally related to
domain: material entity
range: process
definition: A relationship that holds between a material entity and a process in which causality is involved, with either the material entity or some part of the material entity exerting some influence over the process, or the process influencing some aspect of the material entity.
editor note: Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect.
definition editor: Chris Mungall
definition source: causal-relations

capable of regulating
type: ObjectProperty
sub property of: causal agent in process
property chain axiom: capable_of
property chain axiom: regulates
example of usage: pyrethroid -> growth
definition: Holds between c and p if and only if c is capable of some activity a, and a regulates p.
definition source: causal-relations

capable of negatively regulating
type: ObjectProperty
sub property of: capable of regulating
property chain axiom: capable_of
property chain axiom: negatively regulates
definition: Holds between c and p if and only if c is capable of some activity a, and a negatively regulates p.
definition source: causal-relations

capable of positively regulating
type: ObjectProperty
sub property of: capable of regulating
property chain axiom: capable_of
property chain axiom: positively regulates
example of usage: renin -> arteriolar smooth muscle contraction
definition: Holds between c and p if and only if c is capable of some activity a, and a positively regulates p.
definition source: causal-relations

process has causal agent
type: ObjectProperty
sub property of: causally related to
definition: Inverse of 'causal agent in process'
definition source: causal-relations

obsolete related via dependence to
type: ObjectProperty
definition: A relationship that holds between two entities, where the relationship holds based on the presence or absence of statistical dependence relationship. The entities may be statistical variables, or they may be other kinds of entities such as diseases, chemical entities or processes.
curator note: Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect.
deprecated: true

directly positively regulates
type: ObjectProperty
sub property of: positively regulates
sub property of: directly regulates
definition: Process(P1) directly postively regulates process(P2) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P1 directly positively regulates P2.
definition source: causal-relations
OBO foundry unique label: directly positively regulates (process to process)
is positive form of: directly regulates

directly negatively regulates
type: ObjectProperty
sub property of: negatively regulates
sub property of: directly regulates
definition: Process(P1) directly negatively regulates process(P2) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P1 directly negatively regulates P2.
definition source: causal-relations
OBO foundry unique label: directly negatively regulates (process to process)
is negative form of: directly regulates

produces
type: ObjectProperty
inverse of: produced_by
domain: material entity
range: material entity
property chain axiom:
  inverse of: occurs in
property chain axiom: has output
has curation status: IAO_0000125
definition: a produces b if some process that occurs_in a has_output b, where a and b are material entities. Examples: hybridoma cell line produces monoclonal antibody reagent; chondroblast produces avascular GAG-rich matrix.
definition editor: Melissa Haendel
数据库_交叉_引用: RO:0003000
有_obo_命名空间: uberon
id: produces
in_subset: eco subset
shorthand: produces
comment: Note that this definition doesn't quite distinguish the output of a transformation process from a production process, which is related to the identity/granularity issue.

produced_by
type: ObjectProperty
domain: material entity
range: material entity
has curation status: IAO_0000125
definition: a produced_by b iff some process that occurs_in b has_output a.
definition editor: Melissa Haendel
数据库_交叉_引用: RO:0003001
有_obo_命名空间: uberon
id: produced_by
in_subset: eco subset
shorthand: produced_by
label: produced by

realized in response to stimulus
type: ObjectProperty
sub property of: causally related to
domain: realizable entity
range: material entity
property chain axiom: realized in response to
property chain axiom: has input
definition: A relationship between a realizable entity R (e.g. function or disposition) and a material entity M where R is realized in response to a process that has an input stimulus of M.
created_by: cjm
creation_date: 2017-12-26T19:45:49Z

enables subfunction
type: ObjectProperty
sub property of: functionally related to
property chain axiom: enables
property chain axiom: has_part
definition: Holds between an entity and an process P where the entity enables some larger compound process, and that larger process has-part P.
created_by: cjm
creation_date: 2018-01-25T23:20:13Z

acts upstream of or within, positive effect
type: ObjectProperty
sub property of: acts upstream of or within
property chain axiom: enables
property chain axiom: causally upstream of or within, positive effect
is positive form of: acts upstream of or within
created_by: cjm
creation_date: 2018-01-26T23:49:30Z

acts upstream of or within, negative effect
type: ObjectProperty
sub property of: acts upstream of or within
property chain axiom: enables
property chain axiom: causally upstream of or within, negative effect
is negative form of: acts upstream of or within
created_by: cjm
creation_date: 2018-01-26T23:49:51Z

acts upstream of, positive effect
type: ObjectProperty
sub property of: acts upstream of
sub property of: acts upstream of or within, positive effect
property chain axiom: enables
property chain axiom: causally upstream of, positive effect
definition: c 'acts upstream of, positive effect' p if c is enables f, and f is causally upstream of p, and the direction of f is positive
is positive form of: acts upstream of
created_by: cjm
creation_date: 2018-01-26T23:53:14Z

acts upstream of, negative effect
type: ObjectProperty
sub property of: acts upstream of
sub property of: acts upstream of or within, negative effect
property chain axiom: enables
property chain axiom: causally upstream of, negative effect
definition: c 'acts upstream of, negative effect' p if c is enables f, and f is causally upstream of p, and the direction of f is negative
is negative form of: acts upstream of
created_by: cjm
creation_date: 2018-01-26T23:53:22Z

causally upstream of or within, negative effect
type: ObjectProperty
sub property of: causally upstream of or within
is negative form of: causally upstream of or within
created_by: cjm
creation_date: 2018-03-13T23:55:05Z

causally upstream of or within, positive effect
type: ObjectProperty
sub property of: causally upstream of or within
is positive form of: causally upstream of or within
created_by: cjm
creation_date: 2018-03-13T23:55:19Z

realized in response to
type: ObjectProperty
sub property of: causally related to
domain: realizable entity
range: process
property chain axiom: realized in
property chain axiom: causally downstream of
example of usage: A drought sensitivity trait that inheres in a whole plant is realized in a systemic response process in response to exposure to drought conditions.
example of usage: An inflammatory disease that is realized in response to an inflammatory process occurring in the gut (which is itself the realization of a process realized in response to harmful stimuli in the mucosal lining of th gut)
example of usage: Environmental polymorphism in butterflies: These butterflies have a 'responsivity to day length trait' that is realized in response to the duration of the day, and is realized in developmental processes that lead to increased or decreased pigmentation in the adult morph.
definition: r 'realized in response to' s iff, r is a realizable (e.g. a plant trait such as responsivity to drought), s is an environmental stimulus (a process), and s directly causes the realization of r.
contributor: Austin Meier
contributor: Chris Mungall
contributor: David Osumi-Sutherland
contributor: Marie Angelique Laporte
has_exact_synonym: triggered by process

Axiom
annotated source: realized in response to
annotated property: has_exact_synonym
annotated target: triggered by process
数据库_交叉_引用: RO:cjm

generically depends on
type: ObjectProperty
inverse of: is carrier of
domain: generically dependent continuant
range: independent continuant
property chain axiom: inheres in
property chain axiom: is concretized as
example of usage: Genetic information generically depend on molecules of DNA.
example of usage: The novel *War and Peace* generically depends on this copy of the novel.
example of usage: The pattern shared by chess boards generically depends on any chess board.
example of usage: The score of a symphony g-depends on a copy of the score.
example of usage: This pdf file generically depends on this server.
definition: A generically dependent continuant *b* generically depends on an independent continuant *c* at time *t* means: there inheres in *c* a specifically deendent continuant which concretizes *b* at *t*.
definition source: [072-ISO]
has_exact_synonym: g-depends on

is carrier of
type: ObjectProperty
domain: independent continuant
range: generically dependent continuant
property chain axiom: concretizes
property chain axiom: bearer of
example of usage: Molecules of DNA are carriers of genetic information.
example of usage: This copy of *War and Peace* is carrier of the novel written by Tolstoy.
example of usage: This hard drive is carrier of these data items.
definition: *b* is carrier of *c* at time *t* if and only if *c* *g-depends on* *b* at *t*
definition source: [072-ISO]

vaccine immunization for host
type: ObjectProperty

vaccine immunization against microbe
type: ObjectProperty

derives_from
type: ObjectProperty
definition: Type of tissue or cell/the source of the material.
有_obo_命名空间: disease_ontology
id: derives_from

Axiom
annotated source: derives_from
annotated property: definition
annotated target: Type of tissue or cell/the source of the material.
数据库_交叉_引用: DO:lh

anteriorly connected to
type: ObjectProperty
sub property of: posterior_to
sub property of: connected to
sub property of: transitively anteriorly connected to
definition: x anteriorly_connected_to y iff the anterior part of x is connected to y. i.e. x connected_to y and x posterior_to y.
有_obo_命名空间: uberon
id: anteriorly_connected_to

Axiom
annotated source: anteriorly connected to
annotated property: definition
annotated target: x anteriorly_connected_to y iff the anterior part of x is connected to y. i.e. x connected_to y and x posterior_to y.
数据库_交叉_引用: Connectivity-Design-Pattern

channel for
type: ObjectProperty
domain: UBERON_0004111
range: UBERON_0000463
has_broad_synonym: carries
有_obo_命名空间: uberon
id: channel_for

channels_from
type: ObjectProperty
type: TransitiveProperty
有_obo_命名空间: uberon
id: channels_from

channels_into
type: ObjectProperty
type: TransitiveProperty
有_obo_命名空间: uberon
id: channels_into

conduit for
type: ObjectProperty
definition: x is a conduit for y iff y passes through the lumen of x.
有_obo_命名空间: uberon
id: conduit_for

distally connected to
type: ObjectProperty
sub property of: proximal_to
sub property of: connected to
sub property of: transitively distally connected to
inverse of: proximally connected to
definition: x distally_connected_to y iff the distal part of x is connected to y. i.e. x connected_to y and x proximal_to y.
有_obo_命名空间: uberon
id: distally_connected_to

Axiom
annotated source: distally connected to
annotated property: definition
annotated target: x distally_connected_to y iff the distal part of x is connected to y. i.e. x connected_to y and x proximal_to y.
数据库_交叉_引用: Connectivity-Design-Pattern

existence starts and ends during
type: ObjectProperty
sub property of: existence starts during
sub property of: existence ends during
domain: UBERON_0001062
range: UBERON_0000105
有_obo_命名空间: uberon
id: existence_starts_and_ends_during

extends_fibers_into
type: ObjectProperty
sub property of: connected to
type: SymmetricProperty
有_obo_命名空间: uberon
id: extends_fibers_into

filtered through
type: ObjectProperty
definition: Relationship between a fluid and a material entity, where the fluid is the output of a realization of a filtration role that inheres in the material entity.
有_obo_命名空间: uberon
id: filtered_through
comment: Relationship between a fluid and a filtration barrier, where the portion of fluid arises as a transformation of another portion of fluid on the other side of the barrier, with larger particles removed

indirectly_supplies
type: ObjectProperty
type: TransitiveProperty
property chain axiom: has branching part
property chain axiom: supplies
definition: a indirectly_supplies s iff a has a branch and the branch supplies or indirectly supplies s
editor note: add to RO
有_obo_命名空间: uberon
id: indirectly_supplies

posteriorly connected to
type: ObjectProperty
sub property of: anterior_to
sub property of: connected to
definition: x posteriorly_connected_to y iff the posterior part of x is connected to y. i.e. x connected_to y and x anterior_to y.
有_obo_命名空间: uberon
id: posteriorly_connected_to

Axiom
annotated source: posteriorly connected to
annotated property: definition
annotated target: x posteriorly_connected_to y iff the posterior part of x is connected to y. i.e. x connected_to y and x anterior_to y.
数据库_交叉_引用: Connectivity-Design-Pattern

protects
type: ObjectProperty
有_obo_命名空间: uberon
id: protects

proximally connected to
type: ObjectProperty
sub property of: distal_to
sub property of: connected to
sub property of: transitively proximally connected to
definition: x proximally_connected_to y iff the proximal part of x is connected to y. i.e. x connected_to y and x distal_to y.
有_obo_命名空间: uberon
id: proximally_connected_to

Axiom
annotated source: proximally connected to
annotated property: definition
annotated target: x proximally_connected_to y iff the proximal part of x is connected to y. i.e. x connected_to y and x distal_to y.
数据库_交叉_引用: Connectivity-Design-Pattern

subdivision of
type: ObjectProperty
有_obo_命名空间: uberon
id: subdivision_of
comment: placeholder relation. X = 'subdivision of A' and subdivision_of some B means that X is the mereological sum of A and B

transitively anteriorly connected to
type: ObjectProperty
type: TransitiveProperty
definition: .
有_obo_命名空间: uberon
id: transitively_anteriorly_connected_to

Axiom
annotated source: transitively anteriorly connected to
annotated property: definition
annotated target: .
数据库_交叉_引用: Connectivity-Design-Pattern

transitively_connected to
type: ObjectProperty
type: TransitiveProperty
有_obo_命名空间: uberon
id: transitively_connected_to

transitively distally connected to
type: ObjectProperty
type: TransitiveProperty
definition: .
有_obo_命名空间: uberon
id: transitively_distally_connected_to

Axiom
annotated source: transitively distally connected to
annotated property: definition
annotated target: .
数据库_交叉_引用: Connectivity-Design-Pattern

transitively proximally connected to
type: ObjectProperty
type: TransitiveProperty
definition: .
有_obo_命名空间: uberon
id: transitively_proximally_connected_to

Axiom
annotated source: transitively proximally connected to
annotated property: definition
annotated target: .
数据库_交叉_引用: Connectivity-Design-Pattern

has_disease_location
type: ObjectProperty

entity
type: Class
subclass of: Thing
BFO OWL specification label: entity
BFO OWL specification label: 实体
BFO CLIF specification label: Entity
BFO CLIF specification label: 实体
editor preferred label: entity
editor preferred label: 实体 @zh
example of usage: Julius Caesar
example of usage: Verdi’s Requiem
example of usage: the Second World War
example of usage: your body mass index
example of usage: 你的身体质量指数 @zh
example of usage: 凯撒大帝 @zh
example of usage: 威尔第年代安魂曲 @zh
example of usage: 第二次世界大战 @zh
editor note: BFO 2 Reference: In all areas of empirical inquiry we encounter general terms of two sorts. First are general terms which refer to universals or types:animaltuberculosissurgical procedurediseaseSecond, are general terms used to refer to groups of entities which instantiate a given universal but do not correspond to the extension of any subuniversal of that universal because there is nothing intrinsic to the entities in question by virtue of which they – and only they – are counted as belonging to the given group. Examples are: animal purchased by the Emperortuberculosis diagnosed on a Wednesdaysurgical procedure performed on a patient from Stockholmperson identified as candidate for clinical trial #2056-555person who is signatory of Form 656-PPVpainting by Leonardo da VinciSuch terms, which represent what are called ‘specializations’ in [81
editor note: BFO 2参考：在经验性总结分析的所有领域，我们遇到两种一般术语。首先是指共相或类型的一般术语：animaltuberculosissurgical proceduredisease其次，是用来指以下实例组的一般术语，这些实例组实例化一个给定共性但对应于该共相的任何子共相的扩展，因为没有实体的内在本质讨论因为他们-只有他们-被视为属于给定的群体。例子是：对斯德哥尔摩病人进行的周三手术过程中诊断出结核分枝杆菌而购买的动物，被确定为临床试验的候选人＃2056-555根据莱昂纳多·达·芬奇（Leonardo da Vinci）条款制定的656-PPV表格的签名人。这些术语代表所谓的“专业化'[81 @zh
editor note: Entity doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example Werner Ceusters 'portions of reality' include 4 sorts, entities (as BFO construes them), universals, configurations, and relations. It is an open question as to whether entities as construed in BFO will at some point also include these other portions of reality. See, for example, 'How to track absolutely everything' at http://www.referent-tracking.com/_RTU/papers/CeustersICbookRevised.pdf
editor note: 实体不具有闭合公理，因为子类不一定丧失所有可能性。例如，Werner Ceusters的“现实的部分”包括4类，实体（当BFO构造它们时）、普遍性、配置和关系。这是一个开放性的问题，即在BFO中所解释的实体是否会在某个时候也包含这些其他的现实部分。参见，例如“如何完全追踪所有事物”在http://www.referent-tracking.com/_RTU/papers/CeustersICbookRevised.pdf @zh
imported from: BFO
imported from: bfo.owl
imported from: clo.owl
imported from: ido.owl
imported from: ino.owl
imported from: oae.owl
imported from: obi.owl
imported from: ogg.owl
imported from: ogms.owl
imported from: vo.owl
elucidation: An entity is anything that exists or has existed or will exist. (axiom label in BFO2 Reference: [001-001])
elucidation: 一个实体是存在或已经存在或将存在的任何事物。 （BFO2公理标签参考：[001-001]） @zh
label: 实体 @zh

Axiom
annotated source: entity
annotated property: editor note
annotated target: Entity doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example Werner Ceusters 'portions of reality' include 4 sorts, entities (as BFO construes them), universals, configurations, and relations. It is an open question as to whether entities as construed in BFO will at some point also include these other portions of reality. See, for example, 'How to track absolutely everything' at http://www.referent-tracking.com/_RTU/papers/CeustersICbookRevised.pdf
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/0000004
comment: per discussion with Barry Smith

Axiom
annotated source: entity
annotated property: elucidation
annotated target: An entity is anything that exists or has existed or will exist. (axiom label in BFO2 Reference: [001-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/001-001

continuant
type: Class
subclass of: entity
subclass of: Restriction
  on property: part of
  all values from: continuant
disjoint with: occurrent
disjoint with: Restriction
  on property: part of
  some values from: occurrent
BFO OWL specification label: continuant
BFO OWL specification label: 常体
BFO CLIF specification label: Continuant
BFO CLIF specification label: 常体
editor preferred label: continuant
editor preferred label: 常体 @zh
definition: An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts.
definition: 一个在任何时候都存在的实体，它持续存在，在维持其特性的同时且没有暂时的部分。 @zh
editor note: BFO 2 Reference: Continuant entities are entities which can be sliced to yield parts only along the spatial dimension, yielding for example the parts of your table which we call its legs, its top, its nails. ‘My desk stretches from the window to the door. It has spatial parts, and can be sliced (in space) in two. With respect to time, however, a thing is a continuant.’ [60, p. 240
editor note: BFO 2参考：持续实体是可以被分割的实体，只能沿着空间维度分割成部分，例如产生您的桌子的部分，我们称之为它的腿、顶部、指甲。 “我的桌子从窗户延伸到门口。它有空间部分，可以在空间切成两半。不过，就时间而言，一个事物是连续的。“[60，p。 240 @zh
editor note: Continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example, in an expansion involving bringing in some of Ceuster's other portions of reality, questions are raised as to whether universals are continuants
editor note: 常体不具有闭合公理，因为子类不一定丧失所有可能性。例如，在涉及引入一些Ceuster的实体的其他部分的扩展中，提出了普遍性是否是连续性的问题 @zh
imported from: BFO
imported from: bfo.owl
imported from: cl.owl
imported from: clo.owl
imported from: ido.owl
imported from: ino.owl
imported from: oae.owl
imported from: obi.owl
imported from: ogg.owl
imported from: ro.owl
imported from: vo.owl
elucidation: A continuant is an entity that persists, endures, or continues to exist through time while maintaining its identity. (axiom label in BFO2 Reference: [008-002])
elucidation: 一个常体是一个持续、持久或持续存在且同时保持其身份的实体。 （BFO2中的公理标签参考：[008-002]） @zh
has associated axiom(nl): if b is a continuant and if, for some t, c has_continuant_part b at t, then c is a continuant. (axiom label in BFO2 Reference: [126-001])
has associated axiom(nl): if b is a continuant and if, for some t, cis continuant_part of b at t, then c is a continuant. (axiom label in BFO2 Reference: [009-002])
has associated axiom(nl): if b is a material entity, then there is some temporal interval (referred to below as a one-dimensional temporal region) during which b exists. (axiom label in BFO2 Reference: [011-002])
has associated axiom(nl): 如果b是一个常体，并且如果对于某个t，c在t时刻具有_常体_部分b，则c是一个常体。 （BFO2公理标签参考：[126-001]） @zh
has associated axiom(nl): 如果b是一个常体，并且如果，对于某个t，c是在t时刻的b的常体_部分，则c是一个常体。 （BFO2公理标签参考：[009-002]） @zh
has associated axiom(nl): 如果b是物质实体，则在b存在期间有一些时间间隔（以下称为一维时间区域）。 （BFO2公理标签：[011-002]） @zh
has associated axiom(fol): (forall (x y) (if (and (Continuant x) (exists (t) (continuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [009-002]
has associated axiom(fol): (forall (x y) (if (and (Continuant x) (exists (t) (hasContinuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [126-001]
has associated axiom(fol): (forall (x) (if (Continuant x) (Entity x))) // axiom label in BFO2 CLIF: [008-002]
has associated axiom(fol): (forall (x) (if (Material Entity x) (exists (t) (and (TemporalRegion t) (existsAt x t))))) // axiom label in BFO2 CLIF: [011-002]
label: 常体 @zh

Axiom
annotated source: continuant
annotated property: editor note
annotated target: Continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example, in an expansion involving bringing in some of Ceuster's other portions of reality, questions are raised as to whether universals are continuants
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/0000007

Axiom
annotated source: continuant
annotated property: elucidation
annotated target: A continuant is an entity that persists, endures, or continues to exist through time while maintaining its identity. (axiom label in BFO2 Reference: [008-002])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/008-002

Axiom
annotated source: continuant
annotated property: has associated axiom(nl)
annotated target: if b is a continuant and if, for some t, c has_continuant_part b at t, then c is a continuant. (axiom label in BFO2 Reference: [126-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/126-001

Axiom
annotated source: continuant
annotated property: has associated axiom(nl)
annotated target: if b is a continuant and if, for some t, cis continuant_part of b at t, then c is a continuant. (axiom label in BFO2 Reference: [009-002])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/009-002

Axiom
annotated source: continuant
annotated property: has associated axiom(nl)
annotated target: if b is a material entity, then there is some temporal interval (referred to below as a one-dimensional temporal region) during which b exists. (axiom label in BFO2 Reference: [011-002])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/011-002

Axiom
annotated source: continuant
annotated property: has associated axiom(fol)
annotated target: (forall (x y) (if (and (Continuant x) (exists (t) (continuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [009-002]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/009-002

Axiom
annotated source: continuant
annotated property: has associated axiom(fol)
annotated target: (forall (x y) (if (and (Continuant x) (exists (t) (hasContinuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [126-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/126-001

Axiom
annotated source: continuant
annotated property: has associated axiom(fol)
annotated target: (forall (x) (if (Continuant x) (Entity x))) // axiom label in BFO2 CLIF: [008-002]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/008-002

Axiom
annotated source: continuant
annotated property: has associated axiom(fol)
annotated target: (forall (x) (if (Material Entity x) (exists (t) (and (TemporalRegion t) (existsAt x t))))) // axiom label in BFO2 CLIF: [011-002]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/011-002

occurrent
type: Class
subclass of: entity
subclass of: Restriction
  on property: part of
  all values from: occurrent
disjoint with: Restriction
  on property: part of
  some values from: continuant
BFO OWL specification label: occurrent
BFO CLIF specification label: Occurrent
definition: An entity that has temporal parts and that happens, unfolds or develops through time.
editor note: BFO 2 Reference: every occurrent that is not a temporal or spatiotemporal region is s-dependent on some independent continuant that is not a spatial region
editor note: BFO 2 Reference: s-dependence obtains between every process and its participants in the sense that, as a matter of necessity, this process could not have existed unless these or those participants existed also. A process may have a succession of participants at different phases of its unfolding. Thus there may be different players on the field at different times during the course of a football game; but the process which is the entire game s-depends_on all of these players nonetheless. Some temporal parts of this process will s-depend_on on only some of the players.
editor note: Occurrent doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. An example would be the sum of a process and the process boundary of another process.
editor note: Simons uses different terminology for relations of occurrents to regions: Denote the spatio-temporal location of a given occurrent e by 'spn[e]' and call this region its span. We may say an occurrent is at its span, in any larger region, and covers any smaller region. Now suppose we have fixed a frame of reference so that we can speak not merely of spatio-temporal but also of spatial regions (places) and temporal regions (times). The spread of an occurrent, (relative to a frame of reference) is the space it exactly occupies, and its spell is likewise the time it exactly occupies. We write 'spr[e]' and `spl[e]' respectively for the spread and spell of e, omitting mention of the frame.
imported from: BFO
imported from: ido.owl
imported from: oae.owl
imported from: obi.owl
imported from: ogg.owl
imported from: vo.owl
elucidation: An occurrent is an entity that unfolds itself in time or it is the instantaneous boundary of such an entity (for example a beginning or an ending) or it is a temporal or spatiotemporal region which such an entity occupies_temporal_region or occupies_spatiotemporal_region. (axiom label in BFO2 Reference: [077-002])
has associated axiom(nl): Every occurrent occupies_spatiotemporal_region some spatiotemporal region. (axiom label in BFO2 Reference: [108-001])
has associated axiom(nl): b is an occurrent entity iff b is an entity that has temporal parts. (axiom label in BFO2 Reference: [079-001])
has associated axiom(fol): (forall (x) (if (Occurrent x) (exists (r) (and (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion x r))))) // axiom label in BFO2 CLIF: [108-001]
has associated axiom(fol): (forall (x) (iff (Occurrent x) (and (Entity x) (exists (y) (temporalPartOf y x))))) // axiom label in BFO2 CLIF: [079-001]

Axiom
annotated source: occurrent
annotated property: editor note
annotated target: Occurrent doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. An example would be the sum of a process and the process boundary of another process.
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/0000006
comment: per discussion with Barry Smith

Axiom
annotated source: occurrent
annotated property: editor note
annotated target: Simons uses different terminology for relations of occurrents to regions: Denote the spatio-temporal location of a given occurrent e by 'spn[e]' and call this region its span. We may say an occurrent is at its span, in any larger region, and covers any smaller region. Now suppose we have fixed a frame of reference so that we can speak not merely of spatio-temporal but also of spatial regions (places) and temporal regions (times). The spread of an occurrent, (relative to a frame of reference) is the space it exactly occupies, and its spell is likewise the time it exactly occupies. We write 'spr[e]' and `spl[e]' respectively for the spread and spell of e, omitting mention of the frame.
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/0000012

Axiom
annotated source: occurrent
annotated property: elucidation
annotated target: An occurrent is an entity that unfolds itself in time or it is the instantaneous boundary of such an entity (for example a beginning or an ending) or it is a temporal or spatiotemporal region which such an entity occupies_temporal_region or occupies_spatiotemporal_region. (axiom label in BFO2 Reference: [077-002])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/077-002

Axiom
annotated source: occurrent
annotated property: has associated axiom(nl)
annotated target: Every occurrent occupies_spatiotemporal_region some spatiotemporal region. (axiom label in BFO2 Reference: [108-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/108-001

Axiom
annotated source: occurrent
annotated property: has associated axiom(nl)
annotated target: b is an occurrent entity iff b is an entity that has temporal parts. (axiom label in BFO2 Reference: [079-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/079-001

Axiom
annotated source: occurrent
annotated property: has associated axiom(fol)
annotated target: (forall (x) (if (Occurrent x) (exists (r) (and (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion x r))))) // axiom label in BFO2 CLIF: [108-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/108-001

Axiom
annotated source: occurrent
annotated property: has associated axiom(fol)
annotated target: (forall (x) (iff (Occurrent x) (and (Entity x) (exists (y) (temporalPartOf y x))))) // axiom label in BFO2 CLIF: [079-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/079-001

independent continuant
type: Class
subclass of: continuant
subclass of: Restriction
  on property: part of
  all values from: independent continuant
disjoint with: specifically dependent continuant
disjoint with: generically dependent continuant
BFO OWL specification label: ic
BFO CLIF specification label: IndependentContinuant
example of usage: a chair
example of usage: a heart
example of usage: a leg
example of usage: a molecule
example of usage: a spatial region
example of usage: an atom
example of usage: an orchestra.
example of usage: an organism
example of usage: the bottom right portion of a human torso
example of usage: the interior of your mouth
definition: A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything.
definition: b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])
imported from: BFO
imported from: ido.owl
imported from: obi.owl
imported from: ogg.owl
imported from: vo.owl
has associated axiom(nl): For any independent continuant b and any time t there is some spatial region r such that b is located_in r at t. (axiom label in BFO2 Reference: [134-001])
has associated axiom(nl): For every independent continuant b and time t during the region of time spanned by its life, there are entities which s-depends_on b during t. (axiom label in BFO2 Reference: [018-002])
has associated axiom(fol): (forall (x t) (if (IndependentContinuant x) (exists (r) (and (SpatialRegion r) (locatedInAt x r t))))) // axiom label in BFO2 CLIF: [134-001]
has associated axiom(fol): (forall (x t) (if (and (IndependentContinuant x) (existsAt x t)) (exists (y) (and (Entity y) (specificallyDependsOnAt y x t))))) // axiom label in BFO2 CLIF: [018-002]
has associated axiom(fol): (iff (IndependentContinuant a) (and (Continuant a) (not (exists (b t) (specificallyDependsOnAt a b t))))) // axiom label in BFO2 CLIF: [017-002]
label: 独立常体 @zh

Axiom
annotated source: independent continuant
annotated property: definition
annotated target: b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/017-002

Axiom
annotated source: independent continuant
annotated property: has associated axiom(nl)
annotated target: For any independent continuant b and any time t there is some spatial region r such that b is located_in r at t. (axiom label in BFO2 Reference: [134-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/134-001

Axiom
annotated source: independent continuant
annotated property: has associated axiom(nl)
annotated target: For every independent continuant b and time t during the region of time spanned by its life, there are entities which s-depends_on b during t. (axiom label in BFO2 Reference: [018-002])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/018-002

Axiom
annotated source: independent continuant
annotated property: has associated axiom(fol)
annotated target: (forall (x t) (if (IndependentContinuant x) (exists (r) (and (SpatialRegion r) (locatedInAt x r t))))) // axiom label in BFO2 CLIF: [134-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/134-001

Axiom
annotated source: independent continuant
annotated property: has associated axiom(fol)
annotated target: (forall (x t) (if (and (IndependentContinuant x) (existsAt x t)) (exists (y) (and (Entity y) (specificallyDependsOnAt y x t))))) // axiom label in BFO2 CLIF: [018-002]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/018-002

Axiom
annotated source: independent continuant
annotated property: has associated axiom(fol)
annotated target: (iff (IndependentContinuant a) (and (Continuant a) (not (exists (b t) (specificallyDependsOnAt a b t))))) // axiom label in BFO2 CLIF: [017-002]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/017-002

spatial region
type: Class
subclass of: immaterial entity
disjoint with: site
disjoint with: continuant fiat boundary
BFO OWL specification label: s-region
BFO CLIF specification label: SpatialRegion
editor note: BFO 2 Reference: Spatial regions do not participate in processes.
editor note: Spatial region doesn't have a closure axiom because the subclasses don't exhaust all possibilites. An example would be the union of a spatial point and a spatial line that doesn't overlap the point, or two spatial lines that intersect at a single point. In both cases the resultant spatial region is neither 0-dimensional, 1-dimensional, 2-dimensional, or 3-dimensional.
elucidation: A spatial region is a continuant entity that is a continuant_part_of spaceR as defined relative to some frame R. (axiom label in BFO2 Reference: [035-001])
has associated axiom(nl): All continuant parts of spatial regions are spatial regions. (axiom label in BFO2 Reference: [036-001])
has associated axiom(fol): (forall (x y t) (if (and (SpatialRegion x) (continuantPartOfAt y x t)) (SpatialRegion y))) // axiom label in BFO2 CLIF: [036-001]
has associated axiom(fol): (forall (x) (if (SpatialRegion x) (Continuant x))) // axiom label in BFO2 CLIF: [035-001]

Axiom
annotated source: spatial region
annotated property: editor note
annotated target: Spatial region doesn't have a closure axiom because the subclasses don't exhaust all possibilites. An example would be the union of a spatial point and a spatial line that doesn't overlap the point, or two spatial lines that intersect at a single point. In both cases the resultant spatial region is neither 0-dimensional, 1-dimensional, 2-dimensional, or 3-dimensional.
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/0000002
comment: per discussion with Barry Smith

Axiom
annotated source: spatial region
annotated property: elucidation
annotated target: A spatial region is a continuant entity that is a continuant_part_of spaceR as defined relative to some frame R. (axiom label in BFO2 Reference: [035-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/035-001

Axiom
annotated source: spatial region
annotated property: has associated axiom(nl)
annotated target: All continuant parts of spatial regions are spatial regions. (axiom label in BFO2 Reference: [036-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/036-001

Axiom
annotated source: spatial region
annotated property: has associated axiom(fol)
annotated target: (forall (x y t) (if (and (SpatialRegion x) (continuantPartOfAt y x t)) (SpatialRegion y))) // axiom label in BFO2 CLIF: [036-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/036-001

Axiom
annotated source: spatial region
annotated property: has associated axiom(fol)
annotated target: (forall (x) (if (SpatialRegion x) (Continuant x))) // axiom label in BFO2 CLIF: [035-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/035-001

temporal region
type: Class
subclass of: occurrent
disjoint with: spatiotemporal region
disjoint with: process
disjoint with: process boundary
BFO OWL specification label: t-region
BFO CLIF specification label: TemporalRegion
editor note: Temporal region doesn't have a closure axiom because the subclasses don't exhaust all possibilites. An example would be the mereological sum of a temporal instant and a temporal interval that doesn't overlap the instant. In this case the resultant temporal region is neither 0-dimensional nor 1-dimensional
elucidation: A temporal region is an occurrent entity that is part of time as defined relative to some reference frame. (axiom label in BFO2 Reference: [100-001])
has associated axiom(nl): All parts of temporal regions are temporal regions. (axiom label in BFO2 Reference: [101-001])
has associated axiom(nl): Every temporal region t is such that t occupies_temporal_region t. (axiom label in BFO2 Reference: [119-002])
has associated axiom(fol): (forall (r) (if (TemporalRegion r) (occupiesTemporalRegion r r))) // axiom label in BFO2 CLIF: [119-002]
has associated axiom(fol): (forall (x y) (if (and (TemporalRegion x) (occurrentPartOf y x)) (TemporalRegion y))) // axiom label in BFO2 CLIF: [101-001]
has associated axiom(fol): (forall (x) (if (TemporalRegion x) (Occurrent x))) // axiom label in BFO2 CLIF: [100-001]

Axiom
annotated source: temporal region
annotated property: editor note
annotated target: Temporal region doesn't have a closure axiom because the subclasses don't exhaust all possibilites. An example would be the mereological sum of a temporal instant and a temporal interval that doesn't overlap the instant. In this case the resultant temporal region is neither 0-dimensional nor 1-dimensional
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/0000003
comment: per discussion with Barry Smith

Axiom
annotated source: temporal region
annotated property: elucidation
annotated target: A temporal region is an occurrent entity that is part of time as defined relative to some reference frame. (axiom label in BFO2 Reference: [100-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/100-001

Axiom
annotated source: temporal region
annotated property: has associated axiom(nl)
annotated target: All parts of temporal regions are temporal regions. (axiom label in BFO2 Reference: [101-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/101-001

Axiom
annotated source: temporal region
annotated property: has associated axiom(nl)
annotated target: Every temporal region t is such that t occupies_temporal_region t. (axiom label in BFO2 Reference: [119-002])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/119-002

Axiom
annotated source: temporal region
annotated property: has associated axiom(fol)
annotated target: (forall (r) (if (TemporalRegion r) (occupiesTemporalRegion r r))) // axiom label in BFO2 CLIF: [119-002]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/119-002

Axiom
annotated source: temporal region
annotated property: has associated axiom(fol)
annotated target: (forall (x y) (if (and (TemporalRegion x) (occurrentPartOf y x)) (TemporalRegion y))) // axiom label in BFO2 CLIF: [101-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/101-001

Axiom
annotated source: temporal region
annotated property: has associated axiom(fol)
annotated target: (forall (x) (if (TemporalRegion x) (Occurrent x))) // axiom label in BFO2 CLIF: [100-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/100-001

two-dimensional spatial region
type: Class
subclass of: spatial region
disjoint with: three-dimensional spatial region
BFO OWL specification label: 2d-s-region
BFO CLIF specification label: TwoDimensionalSpatialRegion
example of usage: an infinitely thin plane in space.
example of usage: the surface of a sphere-shaped part of space
elucidation: A two-dimensional spatial region is a spatial region that is of two dimensions. (axiom label in BFO2 Reference: [039-001])
has associated axiom(fol): (forall (x) (if (TwoDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [039-001]

Axiom
annotated source: two-dimensional spatial region
annotated property: elucidation
annotated target: A two-dimensional spatial region is a spatial region that is of two dimensions. (axiom label in BFO2 Reference: [039-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/039-001

Axiom
annotated source: two-dimensional spatial region
annotated property: has associated axiom(fol)
annotated target: (forall (x) (if (TwoDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [039-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/039-001

spatiotemporal region
type: Class
subclass of: occurrent
BFO OWL specification label: st-region
BFO CLIF specification label: SpatiotemporalRegion
example of usage: the spatiotemporal region occupied by a human life
example of usage: the spatiotemporal region occupied by a process of cellular meiosis.
example of usage: the spatiotemporal region occupied by the development of a cancer tumor
elucidation: A spatiotemporal region is an occurrent entity that is part of spacetime. (axiom label in BFO2 Reference: [095-001])
has associated axiom(nl): All parts of spatiotemporal regions are spatiotemporal regions. (axiom label in BFO2 Reference: [096-001])
has associated axiom(nl): Each spatiotemporal region at any time t projects_onto some spatial region at t. (axiom label in BFO2 Reference: [099-001])
has associated axiom(nl): Each spatiotemporal region projects_onto some temporal region. (axiom label in BFO2 Reference: [098-001])
has associated axiom(nl): Every spatiotemporal region occupies_spatiotemporal_region itself.
has associated axiom(nl): Every spatiotemporal region s is such that s occupies_spatiotemporal_region s. (axiom label in BFO2 Reference: [107-002])
has associated axiom(fol): (forall (r) (if (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion r r))) // axiom label in BFO2 CLIF: [107-002]
has associated axiom(fol): (forall (x t) (if (SpatioTemporalRegion x) (exists (y) (and (SpatialRegion y) (spatiallyProjectsOntoAt x y t))))) // axiom label in BFO2 CLIF: [099-001]
has associated axiom(fol): (forall (x y) (if (and (SpatioTemporalRegion x) (occurrentPartOf y x)) (SpatioTemporalRegion y))) // axiom label in BFO2 CLIF: [096-001]
has associated axiom(fol): (forall (x) (if (SpatioTemporalRegion x) (Occurrent x))) // axiom label in BFO2 CLIF: [095-001]
has associated axiom(fol): (forall (x) (if (SpatioTemporalRegion x) (exists (y) (and (TemporalRegion y) (temporallyProjectsOnto x y))))) // axiom label in BFO2 CLIF: [098-001]

Axiom
annotated source: spatiotemporal region
annotated property: elucidation
annotated target: A spatiotemporal region is an occurrent entity that is part of spacetime. (axiom label in BFO2 Reference: [095-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/095-001

Axiom
annotated source: spatiotemporal region
annotated property: has associated axiom(nl)
annotated target: All parts of spatiotemporal regions are spatiotemporal regions. (axiom label in BFO2 Reference: [096-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/096-001

Axiom
annotated source: spatiotemporal region
annotated property: has associated axiom(nl)
annotated target: Each spatiotemporal region at any time t projects_onto some spatial region at t. (axiom label in BFO2 Reference: [099-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/099-001

Axiom
annotated source: spatiotemporal region
annotated property: has associated axiom(nl)
annotated target: Each spatiotemporal region projects_onto some temporal region. (axiom label in BFO2 Reference: [098-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/098-001

Axiom
annotated source: spatiotemporal region
annotated property: has associated axiom(nl)
annotated target: Every spatiotemporal region s is such that s occupies_spatiotemporal_region s. (axiom label in BFO2 Reference: [107-002])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/107-002

Axiom
annotated source: spatiotemporal region
annotated property: has associated axiom(fol)
annotated target: (forall (r) (if (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion r r))) // axiom label in BFO2 CLIF: [107-002]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/107-002

Axiom
annotated source: spatiotemporal region
annotated property: has associated axiom(fol)
annotated target: (forall (x t) (if (SpatioTemporalRegion x) (exists (y) (and (SpatialRegion y) (spatiallyProjectsOntoAt x y t))))) // axiom label in BFO2 CLIF: [099-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/099-001

Axiom
annotated source: spatiotemporal region
annotated property: has associated axiom(fol)
annotated target: (forall (x y) (if (and (SpatioTemporalRegion x) (occurrentPartOf y x)) (SpatioTemporalRegion y))) // axiom label in BFO2 CLIF: [096-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/096-001

Axiom
annotated source: spatiotemporal region
annotated property: has associated axiom(fol)
annotated target: (forall (x) (if (SpatioTemporalRegion x) (Occurrent x))) // axiom label in BFO2 CLIF: [095-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/095-001

Axiom
annotated source: spatiotemporal region
annotated property: has associated axiom(fol)
annotated target: (forall (x) (if (SpatioTemporalRegion x) (exists (y) (and (TemporalRegion y) (temporallyProjectsOnto x y))))) // axiom label in BFO2 CLIF: [098-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/098-001

process
type: Class
subclass of: occurrent
BFO OWL specification label: process
BFO CLIF specification label: Process
example of usage: a process of cell-division, \ a beating of the heart
example of usage: a process of meiosis
example of usage: a process of sleeping
example of usage: the course of a disease
example of usage: the flight of a bird
example of usage: the life of an organism
example of usage: your process of aging.
definition: An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t.
definition: p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])
editor note: BFO 2 Reference: The realm of occurrents is less pervasively marked by the presence of natural units than is the case in the realm of independent continuants. Thus there is here no counterpart of ‘object’. In BFO 1.0 ‘process’ served as such a counterpart. In BFO 2.0 ‘process’ is, rather, the occurrent counterpart of ‘material entity’. Those natural – as contrasted with engineered, which here means: deliberately executed – units which do exist in the realm of occurrents are typically either parasitic on the existence of natural units on the continuant side, or they are fiat in nature. Thus we can count lives; we can count football games; we can count chemical reactions performed in experiments or in chemical manufacturing. We cannot count the processes taking place, for instance, in an episode of insect mating behavior.Even where natural units are identifiable, for example cycles in a cyclical process such as the beating of a heart or an organism’s sleep/wake cycle, the processes in question form a sequence with no discontinuities (temporal gaps) of the sort that we find for instance where billiard balls or zebrafish or planets are separated by clear spatial gaps. Lives of organisms are process units, but they too unfold in a continuous series from other, prior processes such as fertilization, and they unfold in turn in continuous series of post-life processes such as post-mortem decay. Clear examples of boundaries of processes are almost always of the fiat sort (midnight, a time of death as declared in an operating theater or on a death certificate, the initiation of a state of war)
imported from: BFO
imported from: bfo.owl
imported from: ido.owl
imported from: ino.owl
imported from: obi.owl
imported from: ogg.owl
imported from: ro.owl
imported from: vo.owl
has associated axiom(fol): (iff (Process a) (and (Occurrent a) (exists (b) (properTemporalPartOf b a)) (exists (c t) (and (MaterialEntity c) (specificallyDependsOnAt a c t))))) // axiom label in BFO2 CLIF: [083-003]
有_obo_命名空间: bfo
id: BFO:0000015

Axiom
annotated source: process
annotated property: definition
annotated target: p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/083-003

Axiom
annotated source: process
annotated property: has associated axiom(fol)
annotated target: (iff (Process a) (and (Occurrent a) (exists (b) (properTemporalPartOf b a)) (exists (c t) (and (MaterialEntity c) (specificallyDependsOnAt a c t))))) // axiom label in BFO2 CLIF: [083-003]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/083-003

disposition
type: Class
subclass of: realizable entity
subclass of: Restriction
  on property: part of continuant at some time
  all values from: Class
    complement of: role
subclass of: Restriction
  on property: part of continuant at all times that whole exists
  all values from: Class
    complement of: role
disjoint with: role
type: NamedIndividual
has associated axiom(nl): If b is a realizable entity then for all t at which b exists, b s-depends_on some material entity at t. (axiom label in BFO2 Reference: [063-002])
imported from: brucellosis.owl
BFO OWL specification label: disposition
BFO CLIF specification label: Disposition
example of usage: the cell wall is disposed to filter chemicals in endocytosis and exocytosis
elucidation: b is a disposition means: b is a realizable entity & b’s bearer is some material entity & b is such that if it ceases to exist, then its bearer is physically changed, & b’s realization occurs when and because this bearer is in some special physical circumstances, & this realization occurs in virtue of the bearer’s physical make-up. (axiom label in BFO2 Reference: [062-002])
example of usage: the cell wall is disposed to filter chemicals in endocitosis and exocitosis
editor note: BFO 2参考：倾向存在于强度连续体中。只有一小部分触发事件才能实现较弱的倾向形式。这些形式出现在相当数量的类似案例中。 @zh
BFO CLIF specification label: 倾向
has associated axiom(fol): (forall (x t) (if (and (RealizableEntity x) (existsAt x t)) (exists (y) (and (MaterialEntity y) (specificallyDepends x y t))))) // axiom label in BFO2 CLIF: [063-002]
has associated axiom(fol): (forall (x) (if (Disposition x) (and (RealizableEntity x) (exists (y) (and (MaterialEntity y) (bearerOfAt x y t)))))) // axiom label in BFO2 CLIF: [062-002]
imported from: clo.owl
has associated axiom(nl): 如果b是一个可实现的实体，那么对于存在b的所有t时刻，b s-依赖_于t时刻的一个物质实体。 （BFO2公理标签参考：[063-002]） @zh
example of usage: an atom of element X has the disposition to decay to an atom of element Y
imported from: obi.owl
example of usage: certain people have a predisposition to colon cancer
imported from: ido.owl
imported from: oae.owl
example of usage: children are innately disposed to categorize objects in certain ways.
example of usage: 某些人有结肠癌的倾向 @zh
BFO OWL specification label: 倾向
elucidation: b是倾向方式：b是可实现的实体； b的持有人是一些物质实体； b是这样的，如果它不复存在，那么它的持有人发生了物理变化； b的实现发生在且因为这个持有者处于一些特殊的物理环境中；这种实现是由于持有者的物理构成而发生的。 （BFO2公理标签参考：[062-002]） @zh
editor preferred label: 倾向 @zh
example of usage: 细胞壁被设置为过滤内吞作用和胞吐作用中的化学物质 @zh
example of usage: 元素X的原子具有衰减到元素Y的原子的倾向 @zh
imported from: ogg.owl
imported from: vo.owl
example of usage: 孩子天生就倾向于以特定的方式对物体进行分类。 @zh
label: 倾向 @zh
imported from: ogg-bru.owl
editor note: BFO 2 Reference: Dispositions exist along a strength continuum. Weaker forms of disposition are realized in only a fraction of triggering cases. These forms occur in a significant number of cases of a similar type.
editor note: BFO 2 Reference: Dispositions exist along a strength continuum. Weaker forms of disposition are realized in only a fraction of triggering cases. These forms occur in a significant number of cases of a similar type [89
editor preferred label: disposition

realizable entity
type: Class
subclass of: specifically dependent continuant
subclass of: Restriction
  on property: part of
  all values from: realizable entity
subclass of: Restriction
  on property: part of continuant at some time
  all values from: Class
    complement of: quality
subclass of: Restriction
  on property: part of continuant at all times that whole exists
  all values from: Class
    complement of: quality
disjoint with: quality
BFO OWL specification label: realizable
BFO OWL specification label: 可实现的
BFO CLIF specification label: RealizableEntity
BFO CLIF specification label: 可实现实体(RealizableEntity)
editor preferred label: realizable entity
editor preferred label: 可实现实体 @zh
example of usage: the disposition of this piece of metal to conduct electricity.
example of usage: the disposition of your blood to coagulate
example of usage: the function of your reproductive organs
example of usage: the role of being a doctor
example of usage: the role of this boundary to delineate where Utah and Colorado meet
example of usage: 作为医生的角色 @zh
example of usage: 你的生殖器官的功能 @zh
example of usage: 你的血液的凝结倾向 @zh
example of usage: 这个边界角色描绘了犹他州和科罗拉多州的交汇点 @zh
example of usage: 这块金属的导电倾向。 @zh
definition: A specifically dependent continuant that inheres in continuant entities and are not exhibited in full at every time in which it inheres in an entity or group of entities. The exhibition or actualization of a realizable entity is a particular manifestation, functioning or process that occurs under certain circumstances.
definition: 一个特定依赖性常体，在常体实体中存在，并且在每个实体或一组实体中都不会全部展现出来。可实现实体的展示或实现是在特定情况下发生的特定表现、功能或过程。 @zh
imported from: bfo.owl
imported from: clo.owl
imported from: ido.owl
imported from: ino.owl
imported from: oae.owl
imported from: obi.owl
imported from: ogg.owl
imported from: ro.owl
imported from: vo.owl
elucidation: To say that b is a realizable entity is to say that b is a specifically dependent continuant that inheres in some independent continuant which is not a spatial region and is of a type instances of which are realized in processes of a correlated type. (axiom label in BFO2 Reference: [058-002])
elucidation: 要说b是一个可实现实体，就是说b是一个特定依赖性常体，它存在于某些依赖常体中，这个连续体不是一个空间区域，而是一个在相关类型的过程中实现的类型实例。 （BFO2公理标签参考：[058-002]） @zh
has associated axiom(nl): All realizable dependent continuants have independent continuants that are not spatial regions as their bearers. (axiom label in BFO2 Reference: [060-002])
has associated axiom(nl): 所有可实现依赖常体都有独立常体，这些独立常体不是空间区域作为承载。 （BFO2公理标签参考：[060-002]） @zh
has associated axiom(fol): (forall (x t) (if (RealizableEntity x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (bearerOfAt y x t))))) // axiom label in BFO2 CLIF: [060-002]
has associated axiom(fol): (forall (x) (if (RealizableEntity x) (and (SpecificallyDependentContinuant x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (inheresIn x y)))))) // axiom label in BFO2 CLIF: [058-002]
label: 可实现实体 @zh

Axiom
annotated source: realizable entity
annotated property: elucidation
annotated target: To say that b is a realizable entity is to say that b is a specifically dependent continuant that inheres in some independent continuant which is not a spatial region and is of a type instances of which are realized in processes of a correlated type. (axiom label in BFO2 Reference: [058-002])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/058-002

Axiom
annotated source: realizable entity
annotated property: has associated axiom(nl)
annotated target: All realizable dependent continuants have independent continuants that are not spatial regions as their bearers. (axiom label in BFO2 Reference: [060-002])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/060-002

Axiom
annotated source: realizable entity
annotated property: has associated axiom(fol)
annotated target: (forall (x t) (if (RealizableEntity x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (bearerOfAt y x t))))) // axiom label in BFO2 CLIF: [060-002]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/060-002

Axiom
annotated source: realizable entity
annotated property: has associated axiom(fol)
annotated target: (forall (x) (if (RealizableEntity x) (and (SpecificallyDependentContinuant x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (inheresIn x y)))))) // axiom label in BFO2 CLIF: [058-002]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/058-002

zero-dimensional spatial region
type: Class
subclass of: spatial region
disjoint with: three-dimensional spatial region
BFO OWL specification label: 0d-s-region
BFO CLIF specification label: ZeroDimensionalSpatialRegion
elucidation: A zero-dimensional spatial region is a point in space. (axiom label in BFO2 Reference: [037-001])
has associated axiom(fol): (forall (x) (if (ZeroDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [037-001]

Axiom
annotated source: zero-dimensional spatial region
annotated property: elucidation
annotated target: A zero-dimensional spatial region is a point in space. (axiom label in BFO2 Reference: [037-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/037-001

Axiom
annotated source: zero-dimensional spatial region
annotated property: has associated axiom(fol)
annotated target: (forall (x) (if (ZeroDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [037-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/037-001

quality
type: Class
subclass of: specifically dependent continuant
subclass of: Restriction
  on property: part of
  all values from: quality
BFO OWL specification label: quality
BFO CLIF specification label: Quality
example of usage: the ambient temperature of this portion of air
example of usage: the color of a tomato
example of usage: the length of the circumference of your waist
example of usage: the mass of this piece of gold.
example of usage: the shape of your nose
example of usage: the shape of your nostril
imported from: ido.owl
elucidation: a quality is a specifically dependent continuant that, in contrast to roles and dispositions, does not require any further process in order to be realized. (axiom label in BFO2 Reference: [055-001])
has associated axiom(nl): If an entity is a quality at any time that it exists, then it is a quality at every time that it exists. (axiom label in BFO2 Reference: [105-001])
has associated axiom(fol): (forall (x) (if (Quality x) (SpecificallyDependentContinuant x))) // axiom label in BFO2 CLIF: [055-001]
has associated axiom(fol): (forall (x) (if (exists (t) (and (existsAt x t) (Quality x))) (forall (t_1) (if (existsAt x t_1) (Quality x))))) // axiom label in BFO2 CLIF: [105-001]
有_obo_命名空间: bfo
id: BFO:0000019
label: 性质 @zh

Axiom
annotated source: quality
annotated property: elucidation
annotated target: a quality is a specifically dependent continuant that, in contrast to roles and dispositions, does not require any further process in order to be realized. (axiom label in BFO2 Reference: [055-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/055-001

Axiom
annotated source: quality
annotated property: has associated axiom(nl)
annotated target: If an entity is a quality at any time that it exists, then it is a quality at every time that it exists. (axiom label in BFO2 Reference: [105-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/105-001

Axiom
annotated source: quality
annotated property: has associated axiom(fol)
annotated target: (forall (x) (if (Quality x) (SpecificallyDependentContinuant x))) // axiom label in BFO2 CLIF: [055-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/055-001

Axiom
annotated source: quality
annotated property: has associated axiom(fol)
annotated target: (forall (x) (if (exists (t) (and (existsAt x t) (Quality x))) (forall (t_1) (if (existsAt x t_1) (Quality x))))) // axiom label in BFO2 CLIF: [105-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/105-001

specifically dependent continuant
type: Class
subclass of: continuant
subclass of: Restriction
  on property: inheres in at all times
  some values from: Class
    intersection of: independent continuant
    intersection of: Class
      complement of: spatial region
subclass of: Restriction
  on property: part of
  all values from: specifically dependent continuant
subclass of: Restriction
  on property: part of continuant at some time
  all values from: Class
    complement of: Class
      union of: independent continuant
      union of: generically dependent continuant
subclass of: Restriction
  on property: part of continuant at all times that whole exists
  all values from: Class
    complement of: Class
      union of: independent continuant
      union of: generically dependent continuant
disjoint with: generically dependent continuant
BFO OWL specification label: sdc
BFO CLIF specification label: SpecificallyDependentContinuant
BFO CLIF specification label: 特定依赖性常体(SpecificallyDependentContinuant)
editor preferred label: specifically dependent continuant
editor preferred label: 特定依赖性常体 @zh
example of usage: Reciprocal specifically dependent continuants: the function of this key to open this lock and the mutually dependent disposition of this lock: to be opened by this key
example of usage: of one-sided specifically dependent continuants: the mass of this tomato
example of usage: of relational dependent continuants (multiple bearers): John’s love for Mary, the ownership relation between John and this statue, the relation of authority between John and his subordinates.
example of usage: the disposition of this fish to decay
example of usage: the function of this heart: to pump blood
example of usage: the mutual dependence of proton donors and acceptors in chemical reactions [79
example of usage: the mutual dependence of the role predator and the role prey as played by two organisms in a given interaction
example of usage: the pink color of a medium rare piece of grilled filet mignon at its center
example of usage: the role of being a doctor
example of usage: the shape of this hole.
example of usage: the smell of this portion of mozzarella
example of usage: 交互特定依赖性常体：这个键的功能打开这个锁和这个锁的相互依赖的配置：被这个键打开 @zh
example of usage: 作为医生的角色 @zh
example of usage: 关系独立常体（对个载体）：约翰对玛丽的爱，约翰与这座雕像之间的所有关系，以及约翰与他的下属之间的权力关系。 @zh
example of usage: 在它中心的一块四分熟烤菲力牛排的粉色 @zh
example of usage: 局部特定依赖性常体：这个番茄的性质 @zh
example of usage: 捕食者角色和猎物角色的相互依赖由两个生物体在给定的相互作用中扮演 @zh
example of usage: 质子供体和受体在化学反应中的相互依赖[79 @zh
example of usage: 这个洞的形状。 @zh
example of usage: 这条鱼的腐烂倾向 @zh
example of usage: 这部分马苏里拉奶酪的气味 @zh
example of usage: 这颗心的功能：抽血 @zh
definition: A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same.
definition: b is a relational specifically dependent continuant = Def. b is a specifically dependent continuant and there are n > 1 independent continuants c1, … cn which are not spatial regions are such that for all 1 i < j n, ci and cj share no common parts, are such that for each 1 i n, b s-depends_on ci at every time t during the course of b’s existence (axiom label in BFO2 Reference: [131-004])
definition: b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003])
definition: b是一个关系特定依赖性常体 = Def. b是特定依赖性常体并且有n >1个独立常体c1，... cn不是空间区域且是这样的，即对于全部1个 i<j n，ci和cj没有共同的部分，对于每个1 i n，在b存在的过程中每个时间t，b s-依赖_于 ci（BFO2中的公理标号：[131-004]） @zh
definition: b是一个特定依赖性常体 = Def. b是一个常体& 存在一些独立常体c，c不是一个空间区域且是这样的，在b的存在过程地每个时间t，b s-依赖_于c。 （BFO2公理标签参考：[050-003]） @zh
definition: 一个在其他实体中存在或由其他实体承担的常体。 A的每个实例都需要一些特定的B实例，这些B实例必须始终相同。 @zh
editor note: Specifically dependent continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. We're not sure what else will develop here, but for example there are questions such as what are promises, obligation, etc.
editor note: 具体而言，相关常体不具有闭合公理，因为子类不一定丧失所有可能性。我们不确定在这里会发生什么，但是会有如什么是承诺，义务等等的问题。 @zh
imported from: bfo.owl
imported from: cl.owl
imported from: clo.owl
imported from: ido.owl
imported from: ino.owl
imported from: oae.owl
imported from: obi.owl
imported from: ogg.owl
imported from: ro.owl
imported from: vo.owl
has associated axiom(fol): (iff (RelationalSpecificallyDependentContinuant a) (and (SpecificallyDependentContinuant a) (forall (t) (exists (b c) (and (not (SpatialRegion b)) (not (SpatialRegion c)) (not (= b c)) (not (exists (d) (and (continuantPartOfAt d b t) (continuantPartOfAt d c t)))) (specificallyDependsOnAt a b t) (specificallyDependsOnAt a c t)))))) // axiom label in BFO2 CLIF: [131-004]
has associated axiom(fol): (iff (SpecificallyDependentContinuant a) (and (Continuant a) (forall (t) (if (existsAt a t) (exists (b) (and (IndependentContinuant b) (not (SpatialRegion b)) (specificallyDependsOnAt a b t))))))) // axiom label in BFO2 CLIF: [050-003]
label: 特定依赖性常体 @zh

Axiom
annotated source: specifically dependent continuant
annotated property: definition
annotated target: b is a relational specifically dependent continuant = Def. b is a specifically dependent continuant and there are n > 1 independent continuants c1, … cn which are not spatial regions are such that for all 1 i < j n, ci and cj share no common parts, are such that for each 1 i n, b s-depends_on ci at every time t during the course of b’s existence (axiom label in BFO2 Reference: [131-004])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/131-004

Axiom
annotated source: specifically dependent continuant
annotated property: definition
annotated target: b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/050-003

Axiom
annotated source: specifically dependent continuant
annotated property: editor note
annotated target: Specifically dependent continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. We're not sure what else will develop here, but for example there are questions such as what are promises, obligation, etc.
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/0000005
comment: per discussion with Barry Smith

Axiom
annotated source: specifically dependent continuant
annotated property: has associated axiom(fol)
annotated target: (iff (RelationalSpecificallyDependentContinuant a) (and (SpecificallyDependentContinuant a) (forall (t) (exists (b c) (and (not (SpatialRegion b)) (not (SpatialRegion c)) (not (= b c)) (not (exists (d) (and (continuantPartOfAt d b t) (continuantPartOfAt d c t)))) (specificallyDependsOnAt a b t) (specificallyDependsOnAt a c t)))))) // axiom label in BFO2 CLIF: [131-004]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/131-004

Axiom
annotated source: specifically dependent continuant
annotated property: has associated axiom(fol)
annotated target: (iff (SpecificallyDependentContinuant a) (and (Continuant a) (forall (t) (if (existsAt a t) (exists (b) (and (IndependentContinuant b) (not (SpatialRegion b)) (specificallyDependsOnAt a b t))))))) // axiom label in BFO2 CLIF: [050-003]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/050-003

role
type: Class
subclass of: realizable entity
BFO OWL specification label: role
BFO CLIF specification label: Role
example of usage: John’s role of husband to Mary is dependent on Mary’s role of wife to John, and both are dependent on the object aggregate comprising John and Mary as member parts joined together through the relational quality of being married.
example of usage: the priest role
example of usage: the role of a boundary to demarcate two neighboring administrative territories
example of usage: the role of a building in serving as a military target
example of usage: the role of a stone in marking a property boundary
example of usage: the role of subject in a clinical trial
example of usage: the student role
definition: A realizable entity the manifestation of which brings about some result or end that is not essential to a continuant in virtue of the kind of thing that it is but that can be served or participated in by that kind of continuant in some kinds of natural, social or institutional contexts.
editor note: BFO 2 Reference: One major family of examples of non-rigid universals involves roles, and ontologies developed for corresponding administrative purposes may consist entirely of representatives of entities of this sort. Thus ‘professor’, defined as follows,b instance_of professor at t =Def. there is some c, c instance_of professor role & c inheres_in b at t.denotes a non-rigid universal and so also do ‘nurse’, ‘student’, ‘colonel’, ‘taxpayer’, and so forth. (These terms are all, in the jargon of philosophy, phase sortals.) By using role terms in definitions, we can create a BFO conformant treatment of such entities drawing on the fact that, while an instance of professor may be simultaneously an instance of trade union member, no instance of the type professor role is also (at any time) an instance of the type trade union member role (any more than any instance of the type color is at any time an instance of the type length).If an ontology of employment positions should be defined in terms of roles following the above pattern, this enables the ontology to do justice to the fact that individuals instantiate the corresponding universals – professor, sergeant, nurse – only during certain phases in their lives.
imported from: bfo.owl
imported from: ido.owl
imported from: ino.owl
imported from: obi.owl
imported from: ogg.owl
imported from: ro.owl
imported from: vo.owl
elucidation: b is a role means: b is a realizable entity & b exists because there is some single bearer that is in some special physical, social, or institutional set of circumstances in which this bearer does not have to be& b is not such that, if it ceases to exist, then the physical make-up of the bearer is thereby changed. (axiom label in BFO2 Reference: [061-001])
has associated axiom(fol): (forall (x) (if (Role x) (RealizableEntity x))) // axiom label in BFO2 CLIF: [061-001]
label: 角色 @zh

Axiom
annotated source: role
annotated property: elucidation
annotated target: b is a role means: b is a realizable entity & b exists because there is some single bearer that is in some special physical, social, or institutional set of circumstances in which this bearer does not have to be& b is not such that, if it ceases to exist, then the physical make-up of the bearer is thereby changed. (axiom label in BFO2 Reference: [061-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/061-001

Axiom
annotated source: role
annotated property: has associated axiom(fol)
annotated target: (forall (x) (if (Role x) (RealizableEntity x))) // axiom label in BFO2 CLIF: [061-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/061-001

fiat object
type: Class
subclass of: material entity
BFO OWL specification label: fiat-object
BFO OWL specification label: fiat-object-part
BFO CLIF specification label: FiatObjectPart
example of usage: or with divisions drawn by cognitive subjects for practical reasons, such as the division of a cake (before slicing) into (what will become) slices (and thus member parts of an object aggregate). However, this does not mean that fiat object parts are dependent for their existence on divisions or delineations effected by cognitive subjects. If, for example, it is correct to conceive geological layers of the Earth as fiat object parts of the Earth, then even though these layers were first delineated in recent times, still existed long before such delineation and what holds of these layers (for example that the oldest layers are also the lowest layers) did not begin to hold because of our acts of delineation.Treatment of material entity in BFOExamples viewed by some as problematic cases for the trichotomy of fiat object part, object, and object aggregate include: a mussel on (and attached to) a rock, a slime mold, a pizza, a cloud, a galaxy, a railway train with engine and multiple carriages, a clonal stand of quaking aspen, a bacterial community (biofilm), a broken femur. Note that, as Aristotle already clearly recognized, such problematic cases – which lie at or near the penumbra of instances defined by the categories in question – need not invalidate these categories. The existence of grey objects does not prove that there are not objects which are black and objects which are white; the existence of mules does not prove that there are not objects which are donkeys and objects which are horses. It does, however, show that the examples in question need to be addressed carefully in order to show how they can be fitted into the proposed scheme, for example by recognizing additional subdivisions [29
example of usage: the FMA:regional parts of an intact human body.
example of usage: the Western hemisphere of the Earth
example of usage: the division of the brain into regions
example of usage: the division of the planet into hemispheres
example of usage: the dorsal and ventral surfaces of the body
example of usage: the upper and lower lobes of the left lung
editor note: BFO 2 Reference: Most examples of fiat object parts are associated with theoretically drawn divisions
elucidation: b is a fiat object part = Def. b is a material entity which is such that for all times t, if b exists at t then there is some object c such that b proper continuant_part of c at t and c is demarcated from the remainder of c by a two-dimensional continuant fiat boundary. (axiom label in BFO2 Reference: [027-004])
has associated axiom(fol): (forall (x) (if (FiatObjectPart x) (and (MaterialEntity x) (forall (t) (if (existsAt x t) (exists (y) (and (Object y) (properContinuantPartOfAt x y t)))))))) // axiom label in BFO2 CLIF: [027-004]
有_obo_命名空间: bfo
id: BFO:0000024
label: fiat object part

Axiom
annotated source: fiat object
annotated property: elucidation
annotated target: b is a fiat object part = Def. b is a material entity which is such that for all times t, if b exists at t then there is some object c such that b proper continuant_part of c at t and c is demarcated from the remainder of c by a two-dimensional continuant fiat boundary. (axiom label in BFO2 Reference: [027-004])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/027-004

Axiom
annotated source: fiat object
annotated property: has associated axiom(fol)
annotated target: (forall (x) (if (FiatObjectPart x) (and (MaterialEntity x) (forall (t) (if (existsAt x t) (exists (y) (and (Object y) (properContinuantPartOfAt x y t)))))))) // axiom label in BFO2 CLIF: [027-004]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/027-004

one-dimensional spatial region
type: Class
subclass of: spatial region
disjoint with: three-dimensional spatial region
BFO OWL specification label: 1d-s-region
BFO CLIF specification label: OneDimensionalSpatialRegion
example of usage: an edge of a cube-shaped portion of space.
elucidation: A one-dimensional spatial region is a line or aggregate of lines stretching from one point in space to another. (axiom label in BFO2 Reference: [038-001])
has associated axiom(fol): (forall (x) (if (OneDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [038-001]

Axiom
annotated source: one-dimensional spatial region
annotated property: elucidation
annotated target: A one-dimensional spatial region is a line or aggregate of lines stretching from one point in space to another. (axiom label in BFO2 Reference: [038-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/038-001

Axiom
annotated source: one-dimensional spatial region
annotated property: has associated axiom(fol)
annotated target: (forall (x) (if (OneDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [038-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/038-001

object aggregate
type: Class
subclass of: material entity
BFO OWL specification label: object-aggregate
BFO CLIF specification label: ObjectAggregate
example of usage: a collection of cells in a blood biobank.
example of usage: a swarm of bees is an aggregate of members who are linked together through natural bonds
example of usage: a symphony orchestra
example of usage: an organization is an aggregate whose member parts have roles of specific types (for example in a jazz band, a chess club, a football team)
example of usage: defined by fiat: the aggregate of members of an organization
example of usage: defined through physical attachment: the aggregate of atoms in a lump of granite
example of usage: defined through physical containment: the aggregate of molecules of carbon dioxide in a sealed container
example of usage: defined via attributive delimitations such as: the patients in this hospital
example of usage: the aggregate of bearings in a constant velocity axle joint
example of usage: the aggregate of blood cells in your body
example of usage: the nitrogen atoms in the atmosphere
example of usage: the restaurants in Palo Alto
example of usage: your collection of Meissen ceramic plates.
editor note: An entity a is an object aggregate if and only if there is a mutually exhaustive and pairwise disjoint partition of a into objects
editor note: BFO 2 Reference: object aggregates may gain and lose parts while remaining numerically identical (one and the same individual) over time. This holds both for aggregates whose membership is determined naturally (the aggregate of cells in your body) and aggregates determined by fiat (a baseball team, a congressional committee).
definition source: ISBN:978-3-938793-98-5pp124-158#Thomas Bittner and Barry Smith, 'A Theory of Granular Partitions', in K. Munn and B. Smith (eds.), Applied Ontology: An Introduction, Frankfurt/Lancaster: ontos, 2008, 125-158.
elucidation: b is an object aggregate means: b is a material entity consisting exactly of a plurality of objects as member_parts at all times at which b exists. (axiom label in BFO2 Reference: [025-004])
has associated axiom(fol): (forall (x) (if (ObjectAggregate x) (and (MaterialEntity x) (forall (t) (if (existsAt x t) (exists (y z) (and (Object y) (Object z) (memberPartOfAt y x t) (memberPartOfAt z x t) (not (= y z)))))) (not (exists (w t_1) (and (memberPartOfAt w x t_1) (not (Object w)))))))) // axiom label in BFO2 CLIF: [025-004]

Axiom
annotated source: object aggregate
annotated property: editor note
annotated target: An entity a is an object aggregate if and only if there is a mutually exhaustive and pairwise disjoint partition of a into objects
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/0000011

Axiom
annotated source: object aggregate
annotated property: editor note
annotated target: An entity a is an object aggregate if and only if there is a mutually exhaustive and pairwise disjoint partition of a into objects
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/0000301

Axiom
annotated source: object aggregate
annotated property: definition source
annotated target: ISBN:978-3-938793-98-5pp124-158#Thomas Bittner and Barry Smith, 'A Theory of Granular Partitions', in K. Munn and B. Smith (eds.), Applied Ontology: An Introduction, Frankfurt/Lancaster: ontos, 2008, 125-158.
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/0000300

Axiom
annotated source: object aggregate
annotated property: elucidation
annotated target: b is an object aggregate means: b is a material entity consisting exactly of a plurality of objects as member_parts at all times at which b exists. (axiom label in BFO2 Reference: [025-004])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/025-004

Axiom
annotated source: object aggregate
annotated property: has associated axiom(fol)
annotated target: (forall (x) (if (ObjectAggregate x) (and (MaterialEntity x) (forall (t) (if (existsAt x t) (exists (y z) (and (Object y) (Object z) (memberPartOfAt y x t) (memberPartOfAt z x t) (not (= y z)))))) (not (exists (w t_1) (and (memberPartOfAt w x t_1) (not (Object w)))))))) // axiom label in BFO2 CLIF: [025-004]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/025-004

three-dimensional spatial region
type: Class
subclass of: spatial region
BFO OWL specification label: 3d-s-region
BFO CLIF specification label: ThreeDimensionalSpatialRegion
example of usage: a cube-shaped region of space
example of usage: a sphere-shaped region of space,
elucidation: A three-dimensional spatial region is a spatial region that is of three dimensions. (axiom label in BFO2 Reference: [040-001])
has associated axiom(fol): (forall (x) (if (ThreeDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [040-001]

Axiom
annotated source: three-dimensional spatial region
annotated property: elucidation
annotated target: A three-dimensional spatial region is a spatial region that is of three dimensions. (axiom label in BFO2 Reference: [040-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/040-001

Axiom
annotated source: three-dimensional spatial region
annotated property: has associated axiom(fol)
annotated target: (forall (x) (if (ThreeDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [040-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/040-001

site
type: Class
subclass of: immaterial entity
BFO OWL specification label: site
BFO CLIF specification label: Site
example of usage: Manhattan Canyon)
example of usage: a hole in the interior of a portion of cheese
example of usage: a rabbit hole
example of usage: an air traffic control region defined in the airspace above an airport
example of usage: the Grand Canyon
example of usage: the Piazza San Marco
example of usage: the cockpit of an aircraft
example of usage: the hold of a ship
example of usage: the interior of a kangaroo pouch
example of usage: the interior of the trunk of your car
example of usage: the interior of your bedroom
example of usage: the interior of your office
example of usage: the interior of your refrigerator
example of usage: the lumen of your gut
example of usage: your left nostril (a fiat part – the opening – of your left nasal cavity)
elucidation: b is a site means: b is a three-dimensional immaterial entity that is (partially or wholly) bounded by a material entity or it is a three-dimensional immaterial part thereof. (axiom label in BFO2 Reference: [034-002])
has associated axiom(fol): (forall (x) (if (Site x) (ImmaterialEntity x))) // axiom label in BFO2 CLIF: [034-002]

Axiom
annotated source: site
annotated property: elucidation
annotated target: b is a site means: b is a three-dimensional immaterial entity that is (partially or wholly) bounded by a material entity or it is a three-dimensional immaterial part thereof. (axiom label in BFO2 Reference: [034-002])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/034-002

Axiom
annotated source: site
annotated property: has associated axiom(fol)
annotated target: (forall (x) (if (Site x) (ImmaterialEntity x))) // axiom label in BFO2 CLIF: [034-002]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/034-002

object
type: Class
subclass of: material entity
BFO OWL specification label: object
BFO CLIF specification label: Object
example of usage: atom
example of usage: cell
example of usage: cells and organisms
example of usage: engineered artifacts
example of usage: grain of sand
example of usage: molecule
example of usage: organelle
example of usage: organism
example of usage: planet
example of usage: solid portions of matter
example of usage: star
editor note: BFO 2 Reference: BFO rests on the presupposition that at multiple micro-, meso- and macroscopic scales reality exhibits certain stable, spatially separated or separable material units, combined or combinable into aggregates of various sorts (for example organisms into what are called ‘populations’). Such units play a central role in almost all domains of natural science from particle physics to cosmology. Many scientific laws govern the units in question, employing general terms (such as ‘molecule’ or ‘planet’) referring to the types and subtypes of units, and also to the types and subtypes of the processes through which such units develop and interact. The division of reality into such natural units is at the heart of biological science, as also is the fact that these units may form higher-level units (as cells form multicellular organisms) and that they may also form aggregates of units, for example as cells form portions of tissue and organs form families, herds, breeds, species, and so on. At the same time, the division of certain portions of reality into engineered units (manufactured artifacts) is the basis of modern industrial technology, which rests on the distributed mass production of engineered parts through division of labor and on their assembly into larger, compound units such as cars and laptops. The division of portions of reality into units is one starting point for the phenomenon of counting.
editor note: BFO 2 Reference: Each object is such that there are entities of which we can assert unproblematically that they lie in its interior, and other entities of which we can assert unproblematically that they lie in its exterior. This may not be so for entities lying at or near the boundary between the interior and exterior. This means that two objects – for example the two cells depicted in Figure 3 – may be such that there are material entities crossing their boundaries which belong determinately to neither cell. Something similar obtains in certain cases of conjoined twins (see below).
editor note: BFO 2 Reference: To say that b is causally unified means: b is a material entity which is such that its material parts are tied together in such a way that, in environments typical for entities of the type in question,if c, a continuant part of b that is in the interior of b at t, is larger than a certain threshold size (which will be determined differently from case to case, depending on factors such as porosity of external cover) and is moved in space to be at t at a location on the exterior of the spatial region that had been occupied by b at t, then either b’s other parts will be moved in coordinated fashion or b will be damaged (be affected, for example, by breakage or tearing) in the interval between t and t.causal changes in one part of b can have consequences for other parts of b without the mediation of any entity that lies on the exterior of b. Material entities with no proper material parts would satisfy these conditions trivially. Candidate examples of types of causal unity for material entities of more complex sorts are as follows (this is not intended to be an exhaustive list):CU1: Causal unity via physical coveringHere the parts in the interior of the unified entity are combined together causally through a common membrane or other physical covering\. The latter points outwards toward and may serve a protective function in relation to what lies on the exterior of the entity [13, 47
editor note: BFO 2 Reference: an object is a maximal causally unified material entity
editor note: BFO 2 Reference: ‘objects’ are sometimes referred to as ‘grains’ [74
elucidation: b is an object means: b is a material entity which manifests causal unity of one or other of the types CUn listed above & is of a type (a material universal) instances of which are maximal relative to this criterion of causal unity. (axiom label in BFO2 Reference: [024-001])
有_obo_命名空间: bfo
id: BFO:0000030

Axiom
annotated source: object
annotated property: elucidation
annotated target: b is an object means: b is a material entity which manifests causal unity of one or other of the types CUn listed above & is of a type (a material universal) instances of which are maximal relative to this criterion of causal unity. (axiom label in BFO2 Reference: [024-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/024-001

generically dependent continuant
type: Class
subclass of: continuant
subclass of: Restriction
  on property: part of
  all values from: generically dependent continuant
BFO OWL specification label: gdc
BFO CLIF specification label: GenericallyDependentContinuant
example of usage: The entries in your database are patterns instantiated as quality instances in your hard drive. The database itself is an aggregate of such patterns. When you create the database you create a particular instance of the generically dependent continuant type database. Each entry in the database is an instance of the generically dependent continuant type IAO: information content entity.
example of usage: the pdf file on your laptop, the pdf file that is a copy thereof on my laptop
example of usage: the sequence of this protein molecule; the sequence that is a copy thereof in that protein molecule.
definition: A continuant that is dependent on one or other independent continuant bearers. For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time.
definition: b is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities. (axiom label in BFO2 Reference: [074-001])
imported from: obi.owl
imported from: ogg.owl
imported from: vo.owl
has associated axiom(fol): (iff (GenericallyDependentContinuant a) (and (Continuant a) (exists (b t) (genericallyDependsOnAt a b t)))) // axiom label in BFO2 CLIF: [074-001]
label: 普遍依赖性常体 @zh

Axiom
annotated source: generically dependent continuant
annotated property: definition
annotated target: b is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities. (axiom label in BFO2 Reference: [074-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/074-001

Axiom
annotated source: generically dependent continuant
annotated property: has associated axiom(fol)
annotated target: (iff (GenericallyDependentContinuant a) (and (Continuant a) (exists (b t) (genericallyDependsOnAt a b t)))) // axiom label in BFO2 CLIF: [074-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/074-001

function
type: Class
subclass of: disposition
BFO OWL specification label: function
BFO CLIF specification label: Function
example of usage: the function of a hammer to drive in nails
example of usage: the function of a heart pacemaker to regulate the beating of a heart through electricity
example of usage: the function of amylase in saliva to break down starch into sugar
editor note: BFO 2 Reference: In the past, we have distinguished two varieties of function, artifactual function and biological function. These are not asserted subtypes of BFO:function however, since the same function – for example: to pump, to transport – can exist both in artifacts and in biological entities. The asserted subtypes of function that would be needed in order to yield a separate monoheirarchy are not artifactual function, biological function, etc., but rather transporting function, pumping function, etc.
imported from: obi.owl
imported from: vo.owl
elucidation: A function is a disposition that exists in virtue of the bearer’s physical make-up and this physical make-up is something the bearer possesses because it came into being, either through evolution (in the case of natural biological entities) or through intentional design (in the case of artifacts), in order to realize processes of a certain sort. (axiom label in BFO2 Reference: [064-001])
has associated axiom(fol): (forall (x) (if (Function x) (Disposition x))) // axiom label in BFO2 CLIF: [064-001]

Axiom
annotated source: function
annotated property: elucidation
annotated target: A function is a disposition that exists in virtue of the bearer’s physical make-up and this physical make-up is something the bearer possesses because it came into being, either through evolution (in the case of natural biological entities) or through intentional design (in the case of artifacts), in order to realize processes of a certain sort. (axiom label in BFO2 Reference: [064-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/064-001

Axiom
annotated source: function
annotated property: has associated axiom(fol)
annotated target: (forall (x) (if (Function x) (Disposition x))) // axiom label in BFO2 CLIF: [064-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/064-001

process boundary
type: Class
subclass of: occurrent
BFO OWL specification label: p-boundary
BFO CLIF specification label: ProcessBoundary
example of usage: the boundary between the 2nd and 3rd year of your life.
definition: p is a process boundary =Def. p is a temporal part of a process & p has no proper temporal parts. (axiom label in BFO2 Reference: [084-001])
has associated axiom(nl): Every process boundary occupies_temporal_region a zero-dimensional temporal region. (axiom label in BFO2 Reference: [085-002])
has associated axiom(fol): (forall (x) (if (ProcessBoundary x) (exists (y) (and (ZeroDimensionalTemporalRegion y) (occupiesTemporalRegion x y))))) // axiom label in BFO2 CLIF: [085-002]
has associated axiom(fol): (iff (ProcessBoundary a) (exists (p) (and (Process p) (temporalPartOf a p) (not (exists (b) (properTemporalPartOf b a)))))) // axiom label in BFO2 CLIF: [084-001]

Axiom
annotated source: process boundary
annotated property: definition
annotated target: p is a process boundary =Def. p is a temporal part of a process & p has no proper temporal parts. (axiom label in BFO2 Reference: [084-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/084-001

Axiom
annotated source: process boundary
annotated property: has associated axiom(nl)
annotated target: Every process boundary occupies_temporal_region a zero-dimensional temporal region. (axiom label in BFO2 Reference: [085-002])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/085-002

Axiom
annotated source: process boundary
annotated property: has associated axiom(fol)
annotated target: (forall (x) (if (ProcessBoundary x) (exists (y) (and (ZeroDimensionalTemporalRegion y) (occupiesTemporalRegion x y))))) // axiom label in BFO2 CLIF: [085-002]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/085-002

Axiom
annotated source: process boundary
annotated property: has associated axiom(fol)
annotated target: (iff (ProcessBoundary a) (exists (p) (and (Process p) (temporalPartOf a p) (not (exists (b) (properTemporalPartOf b a)))))) // axiom label in BFO2 CLIF: [084-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/084-001

one-dimensional temporal region
type: Class
subclass of: temporal region
disjoint with: zero-dimensional temporal region
BFO OWL specification label: 1d-t-region
BFO CLIF specification label: OneDimensionalTemporalRegion
example of usage: the temporal region during which a process occurs.
editor note: BFO 2 Reference: A temporal interval is a special kind of one-dimensional temporal region, namely one that is self-connected (is without gaps or breaks).
elucidation: A one-dimensional temporal region is a temporal region that is extended. (axiom label in BFO2 Reference: [103-001])
has associated axiom(fol): (forall (x) (if (OneDimensionalTemporalRegion x) (TemporalRegion x))) // axiom label in BFO2 CLIF: [103-001]

Axiom
annotated source: one-dimensional temporal region
annotated property: elucidation
annotated target: A one-dimensional temporal region is a temporal region that is extended. (axiom label in BFO2 Reference: [103-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/103-001

Axiom
annotated source: one-dimensional temporal region
annotated property: has associated axiom(fol)
annotated target: (forall (x) (if (OneDimensionalTemporalRegion x) (TemporalRegion x))) // axiom label in BFO2 CLIF: [103-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/103-001

material entity
type: Class
subclass of: independent continuant
disjoint with: immaterial entity
disjoint with: Restriction
  on property: part of
  some values from: immaterial entity
BFO OWL specification label: material
BFO CLIF specification label: MaterialEntity
example of usage: a flame
example of usage: a forest fire
example of usage: a human being
example of usage: a hurricane
example of usage: a photon
example of usage: a puff of smoke
example of usage: a sea wave
example of usage: a tornado
example of usage: an aggregate of human beings.
example of usage: an energy wave
example of usage: an epidemic
example of usage: the undetached arm of a human being
definition: An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time.
editor note: BFO 2 Reference: Material entities (continuants) can preserve their identity even while gaining and losing material parts. Continuants are contrasted with occurrents, which unfold themselves in successive temporal parts or phases [60
editor note: BFO 2 Reference: Object, Fiat Object Part and Object Aggregate are not intended to be exhaustive of Material Entity. Users are invited to propose new subcategories of Material Entity.
editor note: BFO 2 Reference: ‘Matter’ is intended to encompass both mass and energy (we will address the ontological treatment of portions of energy in a later version of BFO). A portion of matter is anything that includes elementary particles among its proper or improper parts: quarks and leptons, including electrons, as the smallest particles thus far discovered; baryons (including protons and neutrons) at a higher level of granularity; atoms and molecules at still higher levels, forming the cells, organs, organisms and other material entities studied by biologists, the portions of rock studied by geologists, the fossils studied by paleontologists, and so on.Material entities are three-dimensional entities (entities extended in three spatial dimensions), as contrasted with the processes in which they participate, which are four-dimensional entities (entities extended also along the dimension of time).According to the FMA, material entities may have immaterial entities as parts – including the entities identified below as sites; for example the interior (or ‘lumen’) of your small intestine is a part of your body. BFO 2.0 embodies a decision to follow the FMA here.
imported from: BFO
imported from: ido.owl
imported from: obi.owl
imported from: ogg.owl
imported from: vo.owl
elucidation: A material entity is an independent continuant that has some portion of matter as proper or improper continuant part. (axiom label in BFO2 Reference: [019-002])
has associated axiom(nl): Every entity which has a material entity as continuant part is a material entity. (axiom label in BFO2 Reference: [020-002])
has associated axiom(nl): every entity of which a material entity is continuant part is also a material entity. (axiom label in BFO2 Reference: [021-002])
has associated axiom(fol): (forall (x) (if (MaterialEntity x) (IndependentContinuant x))) // axiom label in BFO2 CLIF: [019-002]
has associated axiom(fol): (forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt x y t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [021-002]
has associated axiom(fol): (forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt y x t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [020-002]
有_obo_命名空间: bfo
id: BFO:0000040

Axiom
annotated source: material entity
annotated property: elucidation
annotated target: A material entity is an independent continuant that has some portion of matter as proper or improper continuant part. (axiom label in BFO2 Reference: [019-002])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/019-002

Axiom
annotated source: material entity
annotated property: has associated axiom(nl)
annotated target: Every entity which has a material entity as continuant part is a material entity. (axiom label in BFO2 Reference: [020-002])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/020-002

Axiom
annotated source: material entity
annotated property: has associated axiom(nl)
annotated target: every entity of which a material entity is continuant part is also a material entity. (axiom label in BFO2 Reference: [021-002])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/021-002

Axiom
annotated source: material entity
annotated property: has associated axiom(fol)
annotated target: (forall (x) (if (MaterialEntity x) (IndependentContinuant x))) // axiom label in BFO2 CLIF: [019-002]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/019-002

Axiom
annotated source: material entity
annotated property: has associated axiom(fol)
annotated target: (forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt x y t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [021-002]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/021-002

Axiom
annotated source: material entity
annotated property: has associated axiom(fol)
annotated target: (forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt y x t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [020-002]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/020-002

continuant fiat boundary
type: Class
subclass of: immaterial entity
BFO OWL specification label: cf-boundary
BFO CLIF specification label: ContinuantFiatBoundary
definition: b is a continuant fiat boundary = Def. b is an immaterial entity that is of zero, one or two dimensions and does not include a spatial region as part. (axiom label in BFO2 Reference: [029-001])
editor note: BFO 2 Reference: In BFO 1.1 the assumption was made that the external surface of a material entity such as a cell could be treated as if it were a boundary in the mathematical sense. The new document propounds the view that when we talk about external surfaces of material objects in this way then we are talking about something fiat. To be dealt with in a future version: fiat boundaries at different levels of granularity.More generally, the focus in discussion of boundaries in BFO 2.0 is now on fiat boundaries, which means: boundaries for which there is no assumption that they coincide with physical discontinuities. The ontology of boundaries becomes more closely allied with the ontology of regions.
editor note: BFO 2 Reference: a continuant fiat boundary is a boundary of some material entity (for example: the plane separating the Northern and Southern hemispheres; the North Pole), or it is a boundary of some immaterial entity (for example of some portion of airspace). Three basic kinds of continuant fiat boundary can be distinguished (together with various combination kinds [29
editor note: Continuant fiat boundary doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. An example would be the mereological sum of two-dimensional continuant fiat boundary and a one dimensional continuant fiat boundary that doesn't overlap it. The situation is analogous to temporal and spatial regions.
has associated axiom(nl): Every continuant fiat boundary is located at some spatial region at every time at which it exists
has associated axiom(fol): (iff (ContinuantFiatBoundary a) (and (ImmaterialEntity a) (exists (b) (and (or (ZeroDimensionalSpatialRegion b) (OneDimensionalSpatialRegion b) (TwoDimensionalSpatialRegion b)) (forall (t) (locatedInAt a b t)))) (not (exists (c t) (and (SpatialRegion c) (continuantPartOfAt c a t)))))) // axiom label in BFO2 CLIF: [029-001]

Axiom
annotated source: continuant fiat boundary
annotated property: definition
annotated target: b is a continuant fiat boundary = Def. b is an immaterial entity that is of zero, one or two dimensions and does not include a spatial region as part. (axiom label in BFO2 Reference: [029-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/029-001

Axiom
annotated source: continuant fiat boundary
annotated property: editor note
annotated target: Continuant fiat boundary doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. An example would be the mereological sum of two-dimensional continuant fiat boundary and a one dimensional continuant fiat boundary that doesn't overlap it. The situation is analogous to temporal and spatial regions.
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/0000008

Axiom
annotated source: continuant fiat boundary
annotated property: has associated axiom(fol)
annotated target: (iff (ContinuantFiatBoundary a) (and (ImmaterialEntity a) (exists (b) (and (or (ZeroDimensionalSpatialRegion b) (OneDimensionalSpatialRegion b) (TwoDimensionalSpatialRegion b)) (forall (t) (locatedInAt a b t)))) (not (exists (c t) (and (SpatialRegion c) (continuantPartOfAt c a t)))))) // axiom label in BFO2 CLIF: [029-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/029-001

immaterial entity
type: Class
subclass of: independent continuant
disjoint with: Restriction
  on property: has_part
  some values from: material entity
BFO OWL specification label: immaterial
BFO CLIF specification label: ImmaterialEntity
editor note: BFO 2 Reference: Immaterial entities are divided into two subgroups:boundaries and sites, which bound, or are demarcated in relation, to material entities, and which can thus change location, shape and size and as their material hosts move or change shape or size (for example: your nasal passage; the hold of a ship; the boundary of Wales (which moves with the rotation of the Earth) [38, 7, 10

one-dimensional continuant fiat boundary
type: Class
subclass of: continuant fiat boundary
disjoint with: two-dimensional continuant fiat boundary
disjoint with: zero-dimensional continuant fiat boundary
BFO OWL specification label: 1d-cf-boundary
BFO CLIF specification label: OneDimensionalContinuantFiatBoundary
example of usage: The Equator
example of usage: all geopolitical boundaries
example of usage: all lines of latitude and longitude
example of usage: the line separating the outer surface of the mucosa of the lower lip from the outer surface of the skin of the chin.
example of usage: the median sulcus of your tongue
elucidation: a one-dimensional continuant fiat boundary is a continuous fiat line whose location is defined in relation to some material entity. (axiom label in BFO2 Reference: [032-001])
has associated axiom(fol): (iff (OneDimensionalContinuantFiatBoundary a) (and (ContinuantFiatBoundary a) (exists (b) (and (OneDimensionalSpatialRegion b) (forall (t) (locatedInAt a b t)))))) // axiom label in BFO2 CLIF: [032-001]

Axiom
annotated source: one-dimensional continuant fiat boundary
annotated property: elucidation
annotated target: a one-dimensional continuant fiat boundary is a continuous fiat line whose location is defined in relation to some material entity. (axiom label in BFO2 Reference: [032-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/032-001

Axiom
annotated source: one-dimensional continuant fiat boundary
annotated property: has associated axiom(fol)
annotated target: (iff (OneDimensionalContinuantFiatBoundary a) (and (ContinuantFiatBoundary a) (exists (b) (and (OneDimensionalSpatialRegion b) (forall (t) (locatedInAt a b t)))))) // axiom label in BFO2 CLIF: [032-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/032-001

process profile
type: Class
subclass of: process
disjoint with: history
BFO OWL specification label: process-profile
BFO CLIF specification label: ProcessProfile
example of usage: On a somewhat higher level of complexity are what we shall call rate process profiles, which are the targets of selective abstraction focused not on determinate quality magnitudes plotted over time, but rather on certain ratios between these magnitudes and elapsed times. A speed process profile, for example, is represented by a graph plotting against time the ratio of distance covered per unit of time. Since rates may change, and since such changes, too, may have rates of change, we have to deal here with a hierarchy of process profile universals at successive levels
example of usage: One important sub-family of rate process profiles is illustrated by the beat or frequency profiles of cyclical processes, illustrated by the 60 beats per minute beating process of John’s heart, or the 120 beats per minute drumming process involved in one of John’s performances in a rock band, and so on. Each such process includes what we shall call a beat process profile instance as part, a subtype of rate process profile in which the salient ratio is not distance covered but rather number of beat cycles per unit of time. Each beat process profile instance instantiates the determinable universal beat process profile. But it also instantiates multiple more specialized universals at lower levels of generality, selected from rate process profilebeat process profileregular beat process profile3 bpm beat process profile4 bpm beat process profileirregular beat process profileincreasing beat process profileand so on.In the case of a regular beat process profile, a rate can be assigned in the simplest possible fashion by dividing the number of cycles by the length of the temporal region occupied by the beating process profile as a whole. Irregular process profiles of this sort, for example as identified in the clinic, or in the readings on an aircraft instrument panel, are often of diagnostic significance.
example of usage: The simplest type of process profiles are what we shall call ‘quality process profiles’, which are the process profiles which serve as the foci of the sort of selective abstraction that is involved when measurements are made of changes in single qualities, as illustrated, for example, by process profiles of mass, temperature, aortic pressure, and so on.
definition: b is a process_profile =Def. there is some process c such that b process_profile_of c (axiom label in BFO2 Reference: [093-002])
elucidation: b process_profile_of c holds when b proper_occurrent_part_of c& there is some proper_occurrent_part d of c which has no parts in common with b & is mutually dependent on b& is such that b, c and d occupy the same temporal region (axiom label in BFO2 Reference: [094-005])
has associated axiom(fol): (forall (x y) (if (processProfileOf x y) (and (properContinuantPartOf x y) (exists (z t) (and (properOccurrentPartOf z y) (TemporalRegion t) (occupiesSpatioTemporalRegion x t) (occupiesSpatioTemporalRegion y t) (occupiesSpatioTemporalRegion z t) (not (exists (w) (and (occurrentPartOf w x) (occurrentPartOf w z))))))))) // axiom label in BFO2 CLIF: [094-005]
has associated axiom(fol): (iff (ProcessProfile a) (exists (b) (and (Process b) (processProfileOf a b)))) // axiom label in BFO2 CLIF: [093-002]

Axiom
annotated source: process profile
annotated property: definition
annotated target: b is a process_profile =Def. there is some process c such that b process_profile_of c (axiom label in BFO2 Reference: [093-002])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/093-002

Axiom
annotated source: process profile
annotated property: elucidation
annotated target: b process_profile_of c holds when b proper_occurrent_part_of c& there is some proper_occurrent_part d of c which has no parts in common with b & is mutually dependent on b& is such that b, c and d occupy the same temporal region (axiom label in BFO2 Reference: [094-005])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/094-005

Axiom
annotated source: process profile
annotated property: has associated axiom(fol)
annotated target: (forall (x y) (if (processProfileOf x y) (and (properContinuantPartOf x y) (exists (z t) (and (properOccurrentPartOf z y) (TemporalRegion t) (occupiesSpatioTemporalRegion x t) (occupiesSpatioTemporalRegion y t) (occupiesSpatioTemporalRegion z t) (not (exists (w) (and (occurrentPartOf w x) (occurrentPartOf w z))))))))) // axiom label in BFO2 CLIF: [094-005]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/094-005

Axiom
annotated source: process profile
annotated property: has associated axiom(fol)
annotated target: (iff (ProcessProfile a) (exists (b) (and (Process b) (processProfileOf a b)))) // axiom label in BFO2 CLIF: [093-002]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/093-002

relational quality
type: Class
equivalent class: Class
  intersection of: quality
  intersection of: Restriction
    on property: inheres in at all times
    min qualified cardinality: 2
    on class: independent continuant
subclass of: quality
BFO OWL specification label: r-quality
BFO CLIF specification label: RelationalQuality
example of usage: John’s role of husband to Mary is dependent on Mary’s role of wife to John, and both are dependent on the object aggregate comprising John and Mary as member parts joined together through the relational quality of being married.
example of usage: a marriage bond, an instance of love, an obligation between one person and another.
example of usage: a marriage bond, an instance of requited love, an obligation between one person and another.
definition: b is a relational quality = Def. for some independent continuants c, d and for some time t: b quality_of c at t & b quality_of d at t. (axiom label in BFO2 Reference: [057-001])
has associated axiom(fol): (iff (RelationalQuality a) (exists (b c t) (and (IndependentContinuant b) (IndependentContinuant c) (qualityOfAt a b t) (qualityOfAt a c t)))) // axiom label in BFO2 CLIF: [057-001]

Axiom
annotated source: relational quality
annotated property: equivalentClass
annotated target: Class
  intersection of: quality
  intersection of: Restriction
    on property: inheres in at all times
    min qualified cardinality: 2
    on class: independent continuant
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/0000568

Axiom
annotated source: relational quality
annotated property: definition
annotated target: b is a relational quality = Def. for some independent continuants c, d and for some time t: b quality_of c at t & b quality_of d at t. (axiom label in BFO2 Reference: [057-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/057-001

Axiom
annotated source: relational quality
annotated property: has associated axiom(fol)
annotated target: (iff (RelationalQuality a) (exists (b c t) (and (IndependentContinuant b) (IndependentContinuant c) (qualityOfAt a b t) (qualityOfAt a c t)))) // axiom label in BFO2 CLIF: [057-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/057-001

two-dimensional continuant fiat boundary
type: Class
subclass of: continuant fiat boundary
BFO OWL specification label: 2d-cf-boundary
BFO CLIF specification label: TwoDimensionalContinuantFiatBoundary
elucidation: a two-dimensional continuant fiat boundary (surface) is a self-connected fiat surface whose location is defined in relation to some material entity. (axiom label in BFO2 Reference: [033-001])
has associated axiom(fol): (iff (TwoDimensionalContinuantFiatBoundary a) (and (ContinuantFiatBoundary a) (exists (b) (and (TwoDimensionalSpatialRegion b) (forall (t) (locatedInAt a b t)))))) // axiom label in BFO2 CLIF: [033-001]

Axiom
annotated source: two-dimensional continuant fiat boundary
annotated property: elucidation
annotated target: a two-dimensional continuant fiat boundary (surface) is a self-connected fiat surface whose location is defined in relation to some material entity. (axiom label in BFO2 Reference: [033-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/033-001

Axiom
annotated source: two-dimensional continuant fiat boundary
annotated property: has associated axiom(fol)
annotated target: (iff (TwoDimensionalContinuantFiatBoundary a) (and (ContinuantFiatBoundary a) (exists (b) (and (TwoDimensionalSpatialRegion b) (forall (t) (locatedInAt a b t)))))) // axiom label in BFO2 CLIF: [033-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/033-001

zero-dimensional continuant fiat boundary
type: Class
subclass of: continuant fiat boundary
BFO OWL specification label: 0d-cf-boundary
BFO CLIF specification label: ZeroDimensionalContinuantFiatBoundary
example of usage: the geographic North Pole
example of usage: the point of origin of some spatial coordinate system.
example of usage: the quadripoint where the boundaries of Colorado, Utah, New Mexico, and Arizona meet
editor note: zero dimension continuant fiat boundaries are not spatial points. Considering the example 'the quadripoint where the boundaries of Colorado, Utah, New Mexico, and Arizona meet' : There are many frames in which that point is zooming through many points in space. Whereas, no matter what the frame, the quadripoint is always in the same relation to the boundaries of Colorado, Utah, New Mexico, and Arizona.
elucidation: a zero-dimensional continuant fiat boundary is a fiat point whose location is defined in relation to some material entity. (axiom label in BFO2 Reference: [031-001])
has associated axiom(fol): (iff (ZeroDimensionalContinuantFiatBoundary a) (and (ContinuantFiatBoundary a) (exists (b) (and (ZeroDimensionalSpatialRegion b) (forall (t) (locatedInAt a b t)))))) // axiom label in BFO2 CLIF: [031-001]

Axiom
annotated source: zero-dimensional continuant fiat boundary
annotated property: editor note
annotated target: zero dimension continuant fiat boundaries are not spatial points. Considering the example 'the quadripoint where the boundaries of Colorado, Utah, New Mexico, and Arizona meet' : There are many frames in which that point is zooming through many points in space. Whereas, no matter what the frame, the quadripoint is always in the same relation to the boundaries of Colorado, Utah, New Mexico, and Arizona.
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/0000001
comment: requested by Melanie Courtot

Axiom
annotated source: zero-dimensional continuant fiat boundary
annotated property: elucidation
annotated target: a zero-dimensional continuant fiat boundary is a fiat point whose location is defined in relation to some material entity. (axiom label in BFO2 Reference: [031-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/031-001

Axiom
annotated source: zero-dimensional continuant fiat boundary
annotated property: has associated axiom(fol)
annotated target: (iff (ZeroDimensionalContinuantFiatBoundary a) (and (ContinuantFiatBoundary a) (exists (b) (and (ZeroDimensionalSpatialRegion b) (forall (t) (locatedInAt a b t)))))) // axiom label in BFO2 CLIF: [031-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/031-001

zero-dimensional temporal region
type: Class
subclass of: temporal region
BFO OWL specification label: 0d-t-region
BFO CLIF specification label: ZeroDimensionalTemporalRegion
example of usage: a temporal region that is occupied by a process boundary
example of usage: right now
example of usage: the moment at which a child is born
example of usage: the moment at which a finger is detached in an industrial accident
example of usage: the moment of death.
alternative term: temporal instant.
elucidation: A zero-dimensional temporal region is a temporal region that is without extent. (axiom label in BFO2 Reference: [102-001])
has associated axiom(fol): (forall (x) (if (ZeroDimensionalTemporalRegion x) (TemporalRegion x))) // axiom label in BFO2 CLIF: [102-001]

Axiom
annotated source: zero-dimensional temporal region
annotated property: elucidation
annotated target: A zero-dimensional temporal region is a temporal region that is without extent. (axiom label in BFO2 Reference: [102-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/102-001

Axiom
annotated source: zero-dimensional temporal region
annotated property: has associated axiom(fol)
annotated target: (forall (x) (if (ZeroDimensionalTemporalRegion x) (TemporalRegion x))) // axiom label in BFO2 CLIF: [102-001]
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/102-001

history
type: Class
subclass of: process
BFO OWL specification label: history
BFO CLIF specification label: History
elucidation: A history is a process that is the sum of the totality of processes taking place in the spatiotemporal region occupied by a material entity or site, including processes on the surface of the entity or within the cavities to which it serves as host. (axiom label in BFO2 Reference: [138-001])

Axiom
annotated source: history
annotated property: elucidation
annotated target: A history is a process that is the sum of the totality of processes taking place in the spatiotemporal region occupied by a material entity or site, including processes on the surface of the entity or within the cavities to which it serves as host. (axiom label in BFO2 Reference: [138-001])
axiom id: http://purl.obolibrary.org/obo/bfo/axiom/138-001

anatomical entity
type: Class
subclass of: biological entity
imported from: caro.owl

connected anatomical structure
type: Class
subclass of: material anatomical entity
imported from: caro.owl

material anatomical entity
type: Class
subclass of: material entity
subclass of: anatomical entity
subclass of: Restriction
  on property: drains
  all values from: connected anatomical structure
imported from: caro.owl

immaterial anatomical entity
type: Class
subclass of: immaterial entity

multi-cell-part structure
type: Class
subclass of: connected anatomical structure
imported from: caro.owl

neuron projection bundle
type: Class
subclass of: multi-cell-part structure
imported from: caro.owl

multicellular anatomical structure
type: Class
subclass of: connected anatomical structure
subclass of: Restriction
  on property: directly_develops_from
  all values from: multicellular anatomical structure
imported from: caro.owl

biological entity
type: Class
subclass of: independent continuant

molecular entity
type: Class
subclass of: chemical entity
editor preferred label: molecular entity
definition: Any constitutionally or isotopically distinct atom, molecule, ion, ion pair, radical, radical ion, complex, conformer etc., identifiable as a separately distinguishable entity.
editor note: We are assuming that every molecular entity has to be completely connected by chemical bonds. This excludes protein complexes, which are comprised of minimally two separate molecular entities. We will follow up with Chebi to ensure this is their understanding as well
imported from: chebi.owl
imported from: ido.owl
has_exact_synonym: molecular entity
有_obo_命名空间: chebi_ontology
has_related_synonym: entidad molecular
has_related_synonym: entidades moleculares
has_related_synonym: entite moleculaire
has_related_synonym: molecular entities
has_related_synonym: molekulare Entitaet
id: CHEBI:23367
in_subset: 3 STAR

Axiom
annotated source: molecular entity
annotated property: definition
annotated target: Any constitutionally or isotopically distinct atom, molecule, ion, ion pair, radical, radical ion, complex, conformer etc., identifiable as a separately distinguishable entity.
数据库_交叉_引用: fake:2

Axiom
annotated source: molecular entity
annotated property: has_exact_synonym
annotated target: molecular entity
数据库_交叉_引用: IUPAC
has_synonym_type: IUPAC NAME

Axiom
annotated source: molecular entity
annotated property: has_related_synonym
annotated target: entidad molecular
数据库_交叉_引用: IUPAC

Axiom
annotated source: molecular entity
annotated property: has_related_synonym
annotated target: entidades moleculares
数据库_交叉_引用: IUPAC

Axiom
annotated source: molecular entity
annotated property: has_related_synonym
annotated target: entite moleculaire
数据库_交叉_引用: IUPAC

Axiom
annotated source: molecular entity
annotated property: has_related_synonym
annotated target: molecular entities
数据库_交叉_引用: IUPAC

Axiom
annotated source: molecular entity
annotated property: has_related_synonym
annotated target: molekulare Entitaet
数据库_交叉_引用: ChEBI

chemical entity
type: Class
subclass of: object
definition: A chemical entity is a physical entity of interest in chemistry including molecular entities, parts thereof, and chemical substances.
has_exact_synonym: chemical entity
有_obo_命名空间: chebi_ontology
id: CHEBI:24431
in_subset: 3 STAR

Axiom
annotated source: chemical entity
annotated property: has_exact_synonym
annotated target: chemical entity
数据库_交叉_引用: UniProt

cell line cell culturing
type: Class
subclass of: maintaining cell culture
definition: a maintaining cell culture process that keeps cell line cell alive and actively cultured.
definition: 维持细胞株存活和活跃培养的细胞培养过程。
definition editor: YH
imported from: clo.owl
label: 细胞系细胞培养 @zh

cell line cell
type: Class
subclass of: secondary cultured cell
subclass of: Class
  union of: Restriction
    on property: is_specified_output_of
    some values from: establishing cell line
  union of: Restriction
    on property: derives from
    some values from: Restriction
      on property: is_specified_output_of
      some values from: establishing cell line
editor preferred label: cell line cell
editor preferred label: 细胞系细胞 @zh
definition: A cultured cell that is part of a cell line - a stable and homogeneous population of cells with a common biological origin and propagation history in culture
definition: 一个培养细胞，它是一个细胞株（一个稳定的，同质的细胞群，具有共同的生物学起源和增殖史）的一部分
definition editor: Yongqun He, Matthew Brush, Sirarat Sarntivijai, Alexander Diehl, Jie Zheng, Yu Lin, Bjoern Peters
imported from: clo.owl
imported from: obi.owl
comment: A 'cell line cell' is a part of a cell line established through the passaging/selection of a primary cultured cells or the experimental modification of an existing cell line. New types of cell line cells are established after sufficient passaging of a primary culture to establish a stable and homogenous population that qualifies as a line (typically 1-20 passages), or following some spontaneous or experimental modification that confers novel characteristics to an existing line. A cell line cell typically has mutations of five or more genes compared to the original cell that derives the cell line cell. Some gene mutations may turn on some oncogenes. Cell line cells can be in active culture, stored in a quiescent state for future use (e.g. frozen in liquid nitrogen), or applied in experimental procedures.
comment: “细胞系细胞”是通过原代培养细胞的传代/选择或现有细胞系的实验性修饰而建立的细胞系的一部分。新类型的细胞系细胞的建立过程是原代培养物充分传代后以建立符合条件（典型地1-20代）的稳定且同质的群体，或者在某些自发或实验性修饰之后赋予现有细胞系新的特征。与产生细胞系细胞的原始细胞相比，细胞系细胞通常具有5个或更多个基因的突变。 一些基因突变可能会开启一些致癌基因。 细胞系细胞可处于活性培养物中，以静止状态储存以供将来使用（例如在液氮中冷冻），或者在实验程序使用。 @zh
label: 细胞系细胞 @zh

suspension cell line culturing
type: Class
subclass of: cell line cell culturing
subclass of: Restriction
  on property: realizes
  some values from: suspension cell culture growth mode
definition: suspension cell line culturing is a cell line culturing method where cells do not require a surface for growth and differentiation. This method is appropriate for cells that are adapted to suspension culture or cells that are non-adhesive (e.g. hematopoietic cells)
definition: 悬浮细胞系培养是其中细胞不需要生长和分化表面的细胞系培养方法。 该方法适用于适合悬浮培养的细胞或非贴壁细胞（如造血细胞）
imported from: clo.owl
label: 悬浮细胞培养 @zh

adherent cell line culturing
type: Class
subclass of: cell line cell culturing
subclass of: Restriction
  on property: realizes
  some values from: adherent cell culture growth mode
definition: adherent cell line culturing is a cell line culturing method where cells require a surface for growth and differentiation.
definition: 贴壁细胞系培养是一种细胞系培养方法，其中细胞需要一个表面进行生长和分化。
imported from: clo.owl
label: 贴壁细胞系培养 @zh

cell line repository role
type: Class
subclass of: role
definition: a role that inheres in a cell line repository organization.
definition: 一个细胞系资源组织中所起的作用
definition editor: SS, YH
imported from: clo.owl
label: 细胞库角色 @zh

cell line repository
type: Class
equivalent class: Class
  intersection of: organization
  intersection of: Restriction
    on property: has_role
    some values from: cell line repository role
subclass of: organization
subclass of: Restriction
  on property: has_role
  some values from: cell line repository role
definition: an organization that serves as a repository of cell lines.
definition: 一个作为细胞系存储库的组织。
definition editor: SS, YH
imported from: clo.owl
label: 细胞库 @zh

adherent on coated surface cell line culturing
type: Class
subclass of: adherent cell line culturing
imported from: clo.owl
has definition: adherent on coated surface cell line culturing is an adherent cell line culturing method that the surface is coated with extracellular matrix component to increase adhesion properties and provide other signals needed for growth and differentiation.

adherent on feeder cells cell line culturing
type: Class
subclass of: adherent cell line culturing
imported from: clo.owl
label: 在饲养细胞上贴壁培养细胞系 @zh

adherent-patchy cell line culturing
type: Class
subclass of: adherent cell line culturing
imported from: clo.owl
label: 贴壁斑片状细胞培养 @zh

loosely adherent cell line culturing
type: Class
subclass of: adherent cell line culturing
imported from: clo.owl
label: 松散贴壁细胞培养 @zh

immortal cell line cell
type: Class
subclass of: cell line cell
editor preferred label: immortal cell line cell
editor preferred label: 永生细胞系细胞 @zh
definition: A cell line cell that is expected to be capable of an unlimited number of divisions, and is thus able to support indefinite propagation in vitro as part of an immortal cell line.
definition: 预期能够进行无限次分裂的细胞系细胞，作为永生细胞系一部分，能够支持体外无限增殖。
definition editor: Yongqun He, Matthew Brush, Allen Xiang, Asiyah Yu Lin, Sirarat Sarntivijai, James Malone, Jie Zheng, Tomasz Adamusiak
alternative term: continuous cell line cell
alternative term: permanent cell line cell
alternative term: 永久细胞系细胞
alternative term: 连续细胞系细胞
imported from: clo.owl
imported from: obi.owl
label: 永生细胞系细胞 @zh

adherent cell culture growth mode
type: Class
subclass of: cell culture growth mode
imported from: clo.owl
definition: a cell culture growth mode that indicates a cell needs to adhere to a cell culture plate to grow.
definition: 一种细胞培养生长模式：细胞需要粘附在细胞培养板上生长
definition editor: YH
label: 贴壁细胞培养生长模式 @zh

suspension cell culture growth mode
type: Class
subclass of: cell culture growth mode
imported from: clo.owl
definition: a cell culture growth mode that indicates a cell can grow when the cell is suspended in cell culture medium.
definition: 一种细胞培养生长模式：当细胞悬浮在细胞培养基中时，细胞可以生长
definition editor: YH
label: 悬浮细胞培养生长模式 @zh

cell culture growth mode
type: Class
subclass of: disposition
imported from: clo.owl
definition: a disposition that represents a mode of cell culture growth, i.e., the cell will grow at a specific cell culture mode. For example, an adherent cell culture growh mode means that the cell will grow when the cell is adhere to a cell culture plate.
definition: 一种代表细胞培养生长模式的配置，即细胞将以特定细胞培养模式生长。 例如，贴壁细胞培养生长模式意味着当细胞粘附于细胞培养板时细胞将生长。
definition editor: YH
label: 细胞培养生长模式 @zh

cell line
type: Class
subclass of: secondary cultured cell population
subclass of: Restriction
  on property: has grain
  some values from: cell line cell
subclass of: Restriction
  on property: has grain
  all values from: cell line cell
editor preferred label: cell line
definition: A cultured cell population that represents a genetically stable and homogenous population of cultured cells that shares a common propagation history (i.e. has been successively passaged together in culture).
imported from: clo.owl
label: 细胞系 @zh

mixed adherent and suspension cell line culturing
type: Class
subclass of: cell line cell culturing
imported from: clo.owl
label: 混合贴壁悬浮细胞培养 @zh

mixed suspension
type: Class
subclass of: mixed adherent and suspension cell line culturing
imported from: clo.owl

clusters in suspension cell line culturing
type: Class
subclass of: suspension cell line culturing
imported from: clo.owl
label: 在悬浮细胞系培养中的成簇细胞 @zh

suspension with feeder cells cell line culturing
type: Class
subclass of: suspension cell line culturing
imported from: clo.owl

suspension-multicell aggregates cell line culturing
type: Class
subclass of: suspension cell line culturing
imported from: clo.owl

immortal mouse cell line cell
type: Class
equivalent class: Class
  intersection of: immortal cell line cell
  intersection of: Restriction
    on property: derives from
    some values from: Restriction
      on property: part of
      some values from: Mus musculus
subclass of: immortal cell line cell
subclass of: Restriction
  on property: derives from
  some values from: Restriction
    on property: part of
    some values from: Mus musculus
definition: a immortal cell line that is dervied from mouse tissue.
definition: 从老鼠组织中得到的一种永生细胞系。
definition editor: Yue Liu, Yongqun He
alternative term: immortal mouse cell line
alternative term: 永生的小鼠细胞系 @zh
imported from: clo.owl
label: 永生的小鼠细胞系细胞 @zh

immortal mouse macrophage cell line
type: Class
equivalent class: Class
  intersection of: immortal mouse cell line cell
  intersection of: Restriction
    on property: derives from
    some values from: macrophage
subclass of: immortal mouse cell line cell
subclass of: Restriction
  on property: derives from
  some values from: macrophage
definition editor: YH
definition editor: a immortal cell line that is dervied from mouse macrophage.
imported from: clo.owl

immortal motile cell line cell
type: Class
subclass of: immortal cell line cell
subclass of: Restriction
  on property: derives from
  some values from: motile cell
definition: a cell line that is derived from motile cell
definition: 源自运动细胞的细胞系 @zh
definition editor: ZX, YH
alternative term: immortal motile cell line
alternative term: 永生的游动细胞系 @zh
imported from: clo.owl
label: 永生的游动细胞系细胞 @zh

immortal leukocyte cell line cell
type: Class
subclass of: immortal motile cell line cell
subclass of: immortal hematopoietic cell line cell
subclass of: Restriction
  on property: derives from
  some values from: leukocyte
definition: a immortal motile cell line that is derived from leukocyte
definition: 源自白细胞的永生游动细胞系 @zh
definition editor: ZX, YH
alternative term: immortal leukocyte cell line
alternative term: 永生的白细胞系 @zh
imported from: clo.owl
label: 永生的白细胞系细胞 @zh

immortal myeloid leukocyte cell line cell
type: Class
subclass of: immortal leukocyte cell line cell
subclass of: immortal myeloid cell line cell
subclass of: Restriction
  on property: derives from
  some values from: myeloid leukocyte
definition: a immortal leukocyte cell line that is derived from myeloid leukocyte
definition: 源自髓系白细胞的永生白细胞系 @zh
definition editor: ZX, YH
alternative term: immortal myeloid leukocyte cell line
alternative term: 永生的髓样白血球细胞系 @zh
imported from: clo.owl
label: 永生的髓样白血球细胞系细胞 @zh

immortal monocyte cell line cell
type: Class
subclass of: immortal myeloid leukocyte cell line cell
subclass of: immortal nongranular leukocyte cell line cell
subclass of: Restriction
  on property: derives from
  some values from: monocyte
definition: a immortal myeloid leukocyte cell line that is derived from monocyte
definition: 源自单核细胞的永生髓系白细胞系 @zh
definition editor: ZX, YH
alternative term: immortal monocyte cell line
alternative term: 永生的单核细胞系 @zh
imported from: clo.owl
label: 永生的单核细胞系细胞 @zh

immortal nongranular leukocyte cell line cell
type: Class
subclass of: immortal leukocyte cell line cell
subclass of: Restriction
  on property: derives from
  some values from: nongranular leukocyte
definition: a immortal leukocyte cell line that is derived from nongranular leukocyte
definition: 源自无粒白细胞的永生白细胞细胞系 @zh
definition editor: ZX, YH
alternative term: immortal nongranular leukocyte cell line
alternative term: 永生的无颗粒白细胞细胞系 @zh
imported from: clo.owl
label: 永生的无颗粒白细胞细胞系细胞 @zh

immortal eukaryotic cell line cell
type: Class
subclass of: immortal cell line cell
subclass of: Restriction
  on property: derives from
  some values from: eukaryotic cell
definition: a immortal cell line cell that is derived from eukaryotic cell
definition: 源自真核细胞的永生细胞系细胞 @zh
definition editor: ZX, YH
imported from: clo.owl
label: 永生的真核细胞系细胞 @zh

immortal animal cell line cell
type: Class
subclass of: immortal eukaryotic cell line cell
subclass of: Restriction
  on property: derives from
  some values from: animal cell
definition: a immortal eukaryotic cell line that is derived from animal cell
definition: 源自动物细胞的永生真核细胞系 @zh
definition editor: ZX, YH
alternative term: immortal animal cell line
alternative term: 永生的动物细胞系 @zh
imported from: clo.owl
label: 永生的动物细胞系细胞 @zh

immortal epithelial cell line cell
type: Class
subclass of: immortal animal cell line cell
subclass of: Restriction
  on property: derives from
  some values from: epithelial cell
definition: a immortal animal cell line that is derived from epithelial cell
definition: 源自上皮细胞的永生动物细胞系 @zh
definition editor: ZX, YH
imported from: clo.owl
label: 永生的上皮细胞系细胞 @zh

immortal hematopoietic cell line cell
type: Class
subclass of: immortal animal cell line cell
subclass of: immortal somatic cell line cell
subclass of: Restriction
  on property: derives from
  some values from: hematopoietic cell
definition: a immortal animal cell line that is derived from hematopoietic cell
definition: 源自造血细胞的永生动物细胞系 @zh
definition editor: ZX, YH
alternative term: immortal hematopoietic cell line
alternative term: 永生的造血细胞系 @zh
imported from: clo.owl
label: 永生的造血细胞系细胞 @zh

immortal myeloid cell line cell
type: Class
subclass of: immortal hematopoietic cell line cell
subclass of: Restriction
  on property: derives from
  some values from: myeloid cell
definition: a immortal hematopoietic cell line that is derived from myeloid cell
definition: 源自骨髓细胞的永生造血细胞系 @zh
definition editor: ZX, YH
alternative term: immortal myeloid cell line
alternative term: 永生的骨髓细胞系 @zh
imported from: clo.owl
label: 永生的骨髓细胞系细胞 @zh

immortal somatic cell line cell
type: Class
subclass of: immortal cell line cell
subclass of: Restriction
  on property: derives from
  some values from: somatic cell
definition: a cell line that is derived from somatic cell
definition: 源自体细胞的细胞系 @zh
definition editor: ZX, YH
imported from: clo.owl
label: 永生的体细胞系细胞 @zh

immortal lung-derived cell line cell
type: Class
subclass of: immortal cell line cell
subclass of: Restriction
  on property: derives from
  some values from: Restriction
    on property: part of
    some values from: UBERON_0000170
definition: An immortal cell line cell that derives from pair of lungs.
definition: 源自一对肺的永生细胞系细胞。 @zh
definition editor: Yue Liu, Yongqun He
imported from: clo.owl
label: 永生化的肺衍生细胞系细胞 @zh

immortal kidney-derived cell line cell
type: Class
subclass of: immortal cell line cell
subclass of: Restriction
  on property: derives from
  some values from: Restriction
    on property: part of
    some values from: UBERON_0002113
definition: An immortal cell line cell that derives from kidney.
definition: 源自肾的永生细胞系细胞。 @zh
definition editor: Yue Liu, Yongqun He
imported from: clo.owl
label: 永生化的肾衍生细胞系细胞 @zh

immortal colon-derived cell line cell
type: Class
equivalent class: Restriction
  on property: derived from anatomic part
  some values from: UBERON_0001155
subclass of: immortal cell line cell
subclass of: Restriction
  on property: derived from anatomic part
  some values from: UBERON_0001155
subclass of: Restriction
  on property: derives from
  some values from: Restriction
    on property: part of
    some values from: UBERON_0001155
definition: An immortal cell line cell that derives from colon.
definition: 源自结肠的永生细胞系细胞。 @zh
definition editor: Yue Liu, Yongqun He
imported from: clo.owl
label: 永生的结肠衍生细胞系细胞 @zh

immortal female gonad-derived cell line cell
type: Class
subclass of: immortal cell line cell
subclass of: Restriction
  on property: derives from
  some values from: Restriction
    on property: part of
    some values from: UBERON_0000992
definition: An immortal cell line cell that derives from female gonad.
definition: 源自雌性性腺的永生细胞系细胞。 @zh
definition editor: Yue Liu, Yongqun He
imported from: clo.owl
label: 永生的雌性性腺衍生细胞系细胞 @zh

immortal stomach-derived cell line cell
type: Class
subclass of: immortal cell line cell
subclass of: Restriction
  on property: derives from
  some values from: Restriction
    on property: part of
    some values from: UBERON_0000945
definition: An immortal cell line cell that derives from stomach.
definition: 源自胃的永生细胞系细胞。 @zh
definition editor: Yue Liu, Yongqun He
imported from: clo.owl
label: 永生化的胃衍生细胞系细胞 @zh

immortal uterine cervix-derived epithelial cell line cell
type: Class
subclass of: immortal epithelial cell line cell
subclass of: Restriction
  on property: derives from
  some values from: Restriction
    on property: part of
    some values from: UBERON_0000002
definition: An immortal epithelial cell line cell that derives from uterine cervix.
definition: 源自子宫颈的永生上皮细胞系细胞。 @zh
definition editor: Yue Liu, Yongqun He
imported from: clo.owl
label: 永生的宫颈衍生上皮细胞系细胞 @zh

immortal human lung-derived cell line cell
type: Class
equivalent class: Class
  intersection of: immortal lung-derived cell line cell
  intersection of: Restriction
    on property: derives from
    some values from: Restriction
      on property: part of
      some values from: Homo sapiens
subclass of: immortal lung-derived cell line cell
subclass of: immortal human cell line cell
definition: An immortal lung-derived cell line cell that derives from human.
definition: 源自人的永生肺衍生细胞系细胞。 @zh
definition editor: Yue Liu, Yongqun He
imported from: clo.owl
label: 永生的人肺衍生细胞系细胞 @zh

immortal human cell line cell
type: Class
equivalent class: Class
  intersection of: immortal cell line cell
  intersection of: Restriction
    on property: derives from
    some values from: Restriction
      on property: part of
      some values from: Homo sapiens
subclass of: immortal cell line cell
subclass of: Restriction
  on property: derives from
  some values from: Restriction
    on property: part of
    some values from: Homo sapiens
definition: An immortal cell line cell that derives from human.
definition: 源自人的永生细胞系细胞。 @zh
definition editor: Yue Liu, Yongqun He
imported from: clo.owl
label: 永生的人细胞系细胞 @zh

immortal human colon-derived cell line cell
type: Class
equivalent class: Class
  intersection of: immortal colon-derived cell line cell
  intersection of: Restriction
    on property: derives from
    some values from: Restriction
      on property: part of
      some values from: Homo sapiens
subclass of: immortal colon-derived cell line cell
subclass of: immortal human cell line cell
definition: An immortal colon-derived cell line cell that derives from human.
definition: 源自人的永生结肠衍生细胞系细胞。 @zh
definition editor: Yue Liu, Yongqun He
imported from: clo.owl
label: 永生化的人结肠衍生细胞系细胞 @zh

immortal vervet monkey kidney-derived cell line cell
type: Class
equivalent class: Class
  intersection of: immortal kidney-derived cell line cell
  intersection of: Restriction
    on property: derives from
    some values from: Restriction
      on property: part of
      some values from: Chlorocebus aethiops
subclass of: immortal kidney-derived cell line cell
subclass of: Restriction
  on property: derives from
  some values from: Restriction
    on property: part of
    some values from: Chlorocebus aethiops
definition: An immortal kidney-derived cell line cell that derives from vervet monkey.
definition: 源自黑长尾猴的永生肾衍生细胞系细胞。 @zh
definition editor: Yue Liu, Yongqun He
imported from: clo.owl
label: 永生的黑长尾猴肾衍生细胞系细胞 @zh

immortal human stomach-derived cell line cell
type: Class
equivalent class: Class
  intersection of: immortal stomach-derived cell line cell
  intersection of: Restriction
    on property: derives from
    some values from: Restriction
      on property: part of
      some values from: Homo sapiens
subclass of: immortal stomach-derived cell line cell
subclass of: immortal human cell line cell
definition: An immortal stomach-derived cell line cell that derives from human.
definition: 源自人的永生胃衍生细胞系细胞。 @zh
definition editor: Yue Liu, Yongqun He
imported from: clo.owl
label: 永生的人胃衍生细胞系细胞 @zh

immortal human epithelial cell line cell
type: Class
equivalent class: Class
  intersection of: immortal epithelial cell line cell
  intersection of: Restriction
    on property: derives from
    some values from: Restriction
      on property: part of
      some values from: Homo sapiens
subclass of: immortal epithelial cell line cell
subclass of: immortal human cell line cell
definition: An immortal epithelial cell line cell that derives from human.
definition: 源自人的永生上皮细胞系细胞。 @zh
definition editor: Yue Liu, Yongqun He
imported from: clo.owl
label: 永生的人上皮细胞系细胞 @zh

immortal human uterine cervix-derived epithelial cell line cell
type: Class
equivalent class: Class
  intersection of: immortal uterine cervix-derived epithelial cell line cell
  intersection of: Restriction
    on property: derives from
    some values from: Restriction
      on property: part of
      some values from: Homo sapiens
subclass of: immortal uterine cervix-derived epithelial cell line cell
subclass of: immortal human epithelial cell line cell
definition: An immortal uterine cervix-derived epithelial cell line cell that derives from human.
definition: 源自人的永生子宫颈衍生上皮细胞系细胞。 @zh
definition editor: Yue Liu, Yongqun He
imported from: clo.owl
label: 永生的人宫颈衍生上皮细胞系细胞 @zh

immortal human monocyte cell line cell
type: Class
equivalent class: Class
  intersection of: immortal monocyte cell line cell
  intersection of: Restriction
    on property: derives from
    some values from: Restriction
      on property: part of
      some values from: Homo sapiens
subclass of: immortal monocyte cell line cell
subclass of: immortal human cell line cell
definition: An immortal monocyte cell line cell that derives from human.
definition: 源自人的永生单核细胞系细胞。 @zh
definition editor: Yue Liu, Yongqun He
imported from: clo.owl
label: 永生的人单核细胞系细胞 @zh

A549 cell
type: Class
subclass of: immortal human lung-derived cell line cell
subclass of: Restriction
  on property: derives from patient having disease
  some values from: lung non-small cell carcinoma
subclass of: Restriction
  on property: is disease model for
  some values from: lung non-small cell carcinoma
subclass of: Restriction
  on property: is_specified_input_of
  some values from: adherent cell line culturing
subclass of: Restriction
  on property: derives from
  some values from: Class
    intersection of: cell
    intersection of: Restriction
      on property: part of
      some values from: Class
        intersection of: UBERON_0000170
        intersection of: Restriction
细胞系LINCS ID: LCL-1601
alternative term: A549
imported from: clo.owl
label: A549 细胞 @zh
see also: ATCC: CCL-185
see also: CHEMBL: CHEMBL3307651
see also: CVCL: CVCL_0023
see also: EFO: EFO_0001086
see also: HyperCLDB: cl207

AGS cell
type: Class
subclass of: immortal human stomach-derived cell line cell
subclass of: Restriction
  on property: derives from patient having disease
  some values from: gastric adenocarcinoma
subclass of: Restriction
  on property: is disease model for
  some values from: gastric adenocarcinoma
subclass of: Restriction
  on property: is_specified_input_of
  some values from: adherent cell line culturing
subclass of: Restriction
  on property: derives from
  some values from: Class
    intersection of: cell
    intersection of: Restriction
      on property: part of
      some values from: Class
        intersection of: UBERON_0000945
        intersection of: Restriction
细胞系LINCS ID: LCL-1893
alternative term: AGS
imported from: clo.owl
label: AGS 细胞 @zh
see also: ATCC: CRL-1739
see also: CHEMBL: CHEMBL3308078
see also: CVCL: CVCL_0139
see also: EFO: EFO_0002109

Caco-2 cell
type: Class
subclass of: immortal human colon-derived cell line cell
subclass of: Restriction
  on property: derives from patient having disease
  some values from: colon adenocarcinoma
subclass of: Restriction
  on property: is disease model for
  some values from: colon adenocarcinoma
subclass of: Restriction
  on property: is_specified_input_of
  some values from: adherent cell line culturing
subclass of: Restriction
  on property: derives from
  some values from: EFO_0000834
subclass of: Restriction
  on property: derives from
  some values from: Class
    intersection of: cell
    intersection of: Restriction
      on property: part of
      some values from: Class
        intersection of: UBERON_0001155
        intersection of: Restriction
细胞系LINCS ID: LCL-1170
alternative term: Caco-2
imported from: clo.owl
comment: disease: colorectal adenocarcinoma
comment: 疾病：结肠直肠腺癌
label: Caco-2 细胞 @zh
see also: ATCC: HTB-37
see also: CHEMBL: CHEMBL3307519
see also: CVCL: CVCL_0025
see also: EFO: EFO_0001099
see also: HyperCLDB: cl618
see also: MeSH: D018938

CHO cell
type: Class
subclass of: immortal female gonad-derived cell line cell
subclass of: Restriction
  on property: derives from
  some values from: Class
    intersection of: cell
    intersection of: Restriction
      on property: part of
      some values from: Class
        intersection of: UBERON_0000992
        intersection of: Restriction
alternative term: CHO
alternative term: Chinese Hamster Ovary cell
alternative term: 中国仓鼠卵巢细胞
imported from: clo.owl
label: CHO 细胞 @zh
see also: HyperCLDB: cl721
see also: MeSH: D016466

Detroit 562 cell
type: Class
subclass of: immortal human epithelial cell line cell
subclass of: Restriction
  on property: is_specified_input_of
  some values from: adherent cell line culturing
细胞系LINCS ID: LCL-1226
alternative term: Detroit 562
definition source: https://www.atcc.org/products/all/CCL-138.aspx
imported from: clo.owl
comment: disease: carcinoma (pharynx primary)
see also: ATCC: CCL-138
see also: CHEMBL: CHEMBL3308486
see also: CVCL: CVCL_1171
see also: ECACC: 87042205
see also: EFO: EFO_0002170

HeLa cell
type: Class
subclass of: immortal human uterine cervix-derived epithelial cell line cell
subclass of: Restriction
  on property: derives from patient having disease
  some values from: cervical adenocarcinoma
subclass of: Restriction
  on property: is disease model for
  some values from: cervical adenocarcinoma
subclass of: Restriction
  on property: is disease model for
  some values from: cervical carcinoma
subclass of: Restriction
  on property: is_specified_input_of
  some values from: adherent cell line culturing
subclass of: Restriction
  on property: derives from
  some values from: Class
    intersection of: epithelial cell
    intersection of: Restriction
      on property: part of
      some values from: Class
        intersection of: UBERON_0000002
        intersection of: Restriction
细胞系LINCS ID: LCL-1512
alternative term: HeLa
definition source: WEB: http://en.wikipedia.org/wiki/HeLa
definition source: WEB: http://www.atcc.org/products/all/CCL-2.aspx
definition source: WEB: https://www.ncbi.nlm.nih.gov/pubmed/12001993
imported from: clo.owl
definition: 1951年2月8日从一位于1951年10月4日因癌症死亡的病人Henrietta Lacks中获取的宫颈腺癌癌细胞衍生的永生人类子宫颈衍生上皮细胞系。
definition: an immortal human uterine cervix-derived epithelial cell line that was derived from cervical adenocarcinoma cancer cells taken on February 8, 1951 from Henrietta Lacks, a patient who died of her cancer on October 4, 1951.
label: HeLa 细胞 @zh
see also: ATCC: CCL-2
see also: CHEMBL: CHEMBL3308376
see also: EFO: EFO_0001185
see also: HyperCLDB: cl1601
see also: MeSH: D006367

HEp-2 cell
type: Class
subclass of: immortal human epithelial cell line cell
subclass of: Restriction
  on property: is_specified_input_of
  some values from: adherent cell line culturing
subclass of: Restriction
  on property: derives from
  some values from: Class
    intersection of: epithelial cell
    intersection of: Restriction
      on property: part of
      some values from: Homo sapiens
alternative term: HEp-2
imported from: clo.owl
see also: ATCC: CCL-23

INT 407 cell
type: Class
subclass of: immortal human cell line cell
subclass of: Restriction
  on property: derives from
  some values from: Class
    intersection of: cell
    intersection of: Restriction
      on property: part of
      some values from: Homo sapiens
    intersection of: Restriction
      on property: existence starts during
      some values from: UBERON_0000068
alternative term: INT 407
imported from: clo.owl
see also: HyperCLDB: cl2897

J774A.1 cell
type: Class
subclass of: immortal mouse macrophage cell line
subclass of: Restriction
  on property: is_specified_input_of
  some values from: adherent cell line culturing
alternative term: J774A.1
imported from: clo.owl
alternative term: J 774A.1
label: J774A.1 细胞 @zh
see also: ATCC: TIB-67
see also: HyperCLDB: cl2928

LS 174T cell
type: Class
subclass of: immortal human colon-derived cell line cell
subclass of: Restriction
  on property: is_specified_input_of
  some values from: adherent cell line culturing
subclass of: Restriction
  on property: derives from
  some values from: Class
    intersection of: cell
    intersection of: Restriction
      on property: part of
      some values from: Class
        intersection of: UBERON_0001155
        intersection of: Restriction
alternative term: LS 174T
imported from: clo.owl
comment: disease: colorectal adenocarcinoma
comment: 疾病：大肠腺癌
label: LS 174T 细胞 @zh
see also: ATCC: CL-188

NCI-H292 cell
type: Class
subclass of: immortal human lung-derived cell line cell
subclass of: Restriction
  on property: is_specified_input_of
  some values from: adherent cell line culturing
subclass of: Restriction
  on property: derives from
  some values from: Class
    intersection of: cell
    intersection of: Restriction
      on property: part of
      some values from: Class
        intersection of: UBERON_0000170
        intersection of: Restriction
alternative term: NCI-H292
imported from: clo.owl
comment: disease: mucoepidermoid pulmonary carcinoma
comment: 疾病：黏液表皮样肺癌
label: NCI-H292 细胞 @zh
see also: ATCC: CRL-1848

THP-1 cell
type: Class
subclass of: immortal human monocyte cell line cell
subclass of: Restriction
  on property: derives from patient having disease
  some values from: acute monocytic leukemia
subclass of: Restriction
  on property: is disease model for
  some values from: acute monocytic leukemia
subclass of: Restriction
  on property: is_specified_input_of
  some values from: suspension cell line culturing
subclass of: Restriction
  on property: derives from
  some values from: blood cell
细胞系LINCS ID: LCL-1072
alternative term: THP-1
imported from: clo.owl
alternative term: THP1
label: THP-1 细胞 @zh
see also: ATCC: TIB-202
see also: CHEMBL: CHEMBL3307574
see also: CVCL: CVCL_0006
see also: EFO: EFO_0001253
see also: HyperCLDB: cl4514

Vero cell
type: Class
subclass of: immortal vervet monkey kidney-derived cell line cell
subclass of: Restriction
  on property: is_specified_input_of
  some values from: adherent cell line culturing
subclass of: Restriction
  on property: derives from
  some values from: Class
    intersection of: cell
    intersection of: Restriction
      on property: part of
      some values from: Class
        intersection of: UBERON_0002113
        intersection of: Restriction
alternative term: Vero
imported from: clo.owl
label: Vero 细胞 @zh
see also: ATCC: CCL-81
see also: HyperCLDB: cl4644
see also: MeSH: D014709

RCB0098 cell
type: Class
subclass of: A549 cell
subclass of: Restriction
  on property: is in cell line repository
  has value: CLO_0000173
细胞系LINCS ID: LCL-1601
definition: A immortal human cell line cell that has the characteristics: Lung carcinoma, refer to ATCC CCL185
definition editor: RIKEN Cell bank Team Yongqun He
alternative term: A549
alternative term: RCB0098
imported from: clo.owl
comment: Derived from tissue: lung in animal: human.
comment: Originator: Giard, D. J.
comment: Register: Abe, Shin-ichiro
see also: ATCC: CCL-185

cell
type: Class
subclass of: connected anatomical structure
subclass of: Restriction
  on property: directly_develops_from
  all values from: cell
editor preferred label: cell
example of usage: PMID:18089833.Cancer Res. 2007 Dec 15;67(24):12018-25. "...Epithelial cells were harvested from histologically confirmed adenocarcinomas .."
definition: A material entity of anatomical origin (part of or deriving from an organism) that has as its parts a maximally connected cell compartment surrounded by a plasma membrane.
imported from: cl.owl
数据库_交叉_引用: CALOHA:TS-2035
数据库_交叉_引用: FMA:68646
数据库_交叉_引用: GO:0005623
数据库_交叉_引用: KUPO:0000002
数据库_交叉_引用: VHOG:0001533
数据库_交叉_引用: WBbt:0004017
数据库_交叉_引用: XAO:0003012
有_obo_命名空间: cell
in_subset: upper level
comment: The definition of cell is intended to represent all cells, and thus a cell is defined as a material entity and not an anatomical structure, which implies that it is part of an organism (or the entirety of one).
label: cell type
label: 细胞 @zh
label: 细胞类型 @zh

primary cultured cell
type: Class
subclass of: cultured cell
subclass of: Class
  complement of: Restriction
    on property: is_specified_output_of
    some values from: cell culture splitting
subclass of: Class
  complement of: Restriction
    on property: derives from
    some values from: Class
      intersection of: cultured cell
      intersection of: Restriction
        on property: is_specified_output_of
        some values from: cell culture splitting
editor preferred label: primary cultured cell
definition: A cultured cell that is freshly isolated from a organismal source, or derives in culture from such a cell prior to the culture being passaged.
imported from: cl.owl
label: 原代培养细胞 @zh

native cell
type: Class
subclass of: cell
editor preferred label: native cell
definition: A cell that is found in a natural setting, which includes multicellular organism cells 'in vivo' (i.e. part of an organism), and unicellular organisms 'in environment' (i.e. part of a natural environment).
imported from: cl.owl
数据库_交叉_引用: CARO:0000013
has_narrow_synonym: cell in vivo
有_obo_命名空间: cell
in_subset: upper level
comment: To accommodate unicellular organisms better, 'cell in vivo' has been re-labeled 'native cell' to better represent its intended meaning - that is, that it is a cell in the context of a multicellular organism or in a natural environment. 'Native' is intended to contrast with 'in vitro', which refers to cells or other biological entities that have been intentionally placed in a controlled, non-natural setting for the purpose of study or manipulation. (MAH 1.12.12).

cultured cell
type: Class
subclass of: experimentally modified cell in vitro
subclass of: Class
  union of: Restriction
    on property: is_specified_output_of
    some values from: establishing cell culture
  union of: Restriction
    on property: derives from
    some values from: Restriction
      on property: is_specified_output_of
      some values from: establishing cell culture
editor preferred label: cultured cell
definition: A cell in vitro that is or has been maintained or propagated as part of a cell culture.
imported from: cl.owl
有_obo_命名空间: cell
comment: Note that this class was re-labeled to 'cultured cell' instead of 'cell line cell', as it intent was clarified to cover any cultured cells of multicellular and unicellular organisms. This includes cells actively being cultured, or cells that have been cultured but are stored in a quiescent state for future use. In having been cultured, cells must establish homeostasis and often replicate in a foreign environment. Accomodation of this stress initiates a selection of cells fit for such challenges, wherein necessary adaptive biochemical and.or genetic changes can occur. These changes can set them apart from the in vivo cells from which they derive, and such changes will typically accumulate and change over increasing time in culture.

epithelial cell
type: Class
subclass of: native cell
editor preferred label: epithelial cell
definition: A cell that is usually found in a two-dimensional sheet with a free surface. The cell has a cytoskeleton that allows for tight cell to cell contact and for cell polarity where apical part is directed towards the lumen and the basal part to the basal lamina.
imported from: cl.owl
数据库_交叉_引用: BTO:0000414
数据库_交叉_引用: CALOHA:TS-2026
数据库_交叉_引用: CARO:0000077
数据库_交叉_引用: FBbt:00000124
数据库_交叉_引用: FMA:66768
数据库_交叉_引用: WBbt:0003672
has_exact_synonym: epitheliocyte
有_obo_命名空间: cell
label: 上皮细胞 @zh

blood cell
type: Class
subclass of: hematopoietic cell
definition: A cell found predominately in the blood.
imported from: cl.owl
数据库_交叉_引用: FMA:62844
有_obo_命名空间: cell
label: 血细胞 @zh

endothelial cell
type: Class
subclass of: native cell
definition: An endothelial cell comprises the outermost layer or lining of anatomical structures and can be squamous or cuboidal. In mammals, endothelial cell has vimentin filaments and is derived from the mesoderm.
imported from: cl.owl
数据库_交叉_引用: BTO:0001176
数据库_交叉_引用: CALOHA:TS-0278
数据库_交叉_引用: FMA:66772
has_exact_synonym: endotheliocyte
有_obo_命名空间: cell
comment: From FMA: 9.07.2001: Endothelial cell has always been classified as a kind of epithelial cell, specifically a squamous cell but that is not true. First, endothelial cell can either be squamous or cuboidal (e.g. high-endothelial cell) and secondly, it has different embryological derivation (mesodermal) than a true epithelial cell (ectodermal and endodermal). The basis for present classification is the fact that it comprises the outermost layer or lining of anatomical structures (location-based) but a better structural basis for the differentia is the cytoskeleton of the cell. Endothelial cell has vimentin filaments while an epithelial cell has keratin filaments. [Onard].

motile cell
type: Class
subclass of: native cell
definition: A cell that moves by its own activities.
imported from: cl.owl
有_obo_命名空间: cell
label: 游动细胞 @zh

macrophage
type: Class
subclass of: native cell
editor preferred label: macrophage
definition: A mononuclear phagocyte present in variety of tissues, typically differentiated from monocytes, capable of phagocytosing a variety of extracellular particulate material, including immune complexes, microorganisms, and dead cells.
imported from: cl.owl
数据库_交叉_引用: BTO:0000801
数据库_交叉_引用: CALOHA:TS-0587
数据库_交叉_引用: FMA:63261
数据库_交叉_引用: FMA:83585
has_exact_synonym: histiocyte
有_obo_命名空间: cell
comment: Morphology: Diameter 30_M-80 _M, abundant cytoplasm, low N/C ratio, eccentric nucleus. Irregular shape with pseudopods, highly adhesive. Contain vacuoles and phagosomes, may contain azurophilic granules; markers: Mouse & Human: CD68, in most cases CD11b. Mouse: in most cases F4/80+; role or process: immune, antigen presentation, & tissue remodelling; lineage: hematopoietic, myeloid.
label: 巨噬细胞 @zh

B cell
type: Class
subclass of: lymphocyte
editor preferred label: B cell
definition: A lymphocyte of B lineage with the phenotype CD19-positive, CD20-positive, and capable of B cell mediated immunity.
imported from: cl.owl

eukaryotic cell
type: Class
subclass of: native cell
imported from: cl.owl
有_obo_命名空间: cell
label: 真核细胞 @zh

lymphocyte
type: Class
subclass of: native cell
subclass of: mononuclear cell
editor preferred label: lymphocyte
definition: A lymphocyte is a leukocyte commonly found in the blood and lymph that has the characteristics of a large nucleus, a neutral staining cytoplasm, and prominent heterochromatin.
imported from: cl.owl
数据库_交叉_引用: BTO:0000775
数据库_交叉_引用: CALOHA:TS-0583
数据库_交叉_引用: FMA:62863
数据库_交叉_引用: VHOG:0001535
有_obo_命名空间: cell
comment: Editors note: consider adding taxon constraint to vertebrata (PMID:18025161)

animal cell
type: Class
subclass of: eukaryotic cell
imported from: cl.owl
有_obo_命名空间: cell
in_subset: upper level
label: 动物细胞 @zh

monocyte
type: Class
subclass of: myeloid leukocyte
subclass of: nongranular leukocyte
definition: Myeloid mononuclear recirculating leukocyte that can act as a precursor of tissue macrophages, osteoclasts and some populations of tissue dendritic cells.
imported from: cl.owl
数据库_交叉_引用: BTO:0000876
数据库_交叉_引用: CALOHA:TS-0638
数据库_交叉_引用: FMA:62864
有_obo_命名空间: cell
comment: Morphology: Mononuclear cell, diameter, 14 to 20 _M, N/C ratio 2:1-1:1. Nucleus may appear in variety of shapes: round, kidney, lobulated, or convoluted. Fine azurophilic granules present; markers: CD11b (shared with other myeloid cells), human: CD14, mouse: F4/80-mid,GR1-low; location: Blood, but can be recruited into tissues; role or process: immune & tissue remodelling; lineage: hematopoietic, myeloid.
label: 单核细胞 @zh

experimentally modified cell in vitro
type: Class
subclass of: cell
subclass of: processed material
editor preferred label: experimentally modified cell in vitro
definition: A cell in vitro that has undergone physical changes as a consequence of a deliberate and specific experimental procedure.
imported from: cl.owl

leukocyte
type: Class
subclass of: motile cell
subclass of: hematopoietic cell
definition: An achromatic cell of the myeloid or lymphoid lineages capable of ameboid movement, found in blood or other tissue.
imported from: cl.owl
数据库_交叉_引用: BTO:0000751
数据库_交叉_引用: CALOHA:TS-0549
数据库_交叉_引用: FMA:62852
has_exact_synonym: immune cell
has_exact_synonym: leucocyte
has_exact_synonym: white blood cell
有_obo_命名空间: cell
label: 白血球 @zh

myeloid cell
type: Class
subclass of: hematopoietic cell
definition: A cell of the monocyte, granulocyte, mast cell, megakaryocyte, or erythroid lineage.
imported from: cl.owl
数据库_交叉_引用: BTO:0001441
数据库_交叉_引用: CALOHA:TS-0647
有_obo_命名空间: cell
label: 骨髓细胞 @zh

myeloid leukocyte
type: Class
subclass of: leukocyte
subclass of: myeloid cell
definition: A cell of the monocyte, granulocyte, or mast cell lineage.
imported from: cl.owl
有_obo_命名空间: cell
label: 骨髓白细胞 @zh

mononuclear cell
type: Class
subclass of: cell
editor preferred label: mononuclear cell
definition: A leukocyte with a single non-segmented nucleus in the mature form.
imported from: cl.owl

hematopoietic cell
type: Class
subclass of: animal cell
subclass of: somatic cell
definition: A cell of a hematopoietic lineage.
imported from: cl.owl
数据库_交叉_引用: BTO:0000574
数据库_交叉_引用: CALOHA:TS-2017
数据库_交叉_引用: FMA:70366
数据库_交叉_引用: FMA:83598
has_exact_synonym: haematopoietic cell
has_exact_synonym: haemopoietic cell
has_exact_synonym: hemopoietic cell
有_obo_命名空间: cell
label: 造血干细胞 @zh

nongranular leukocyte
type: Class
subclass of: leukocyte
definition: A leukocyte that lacks granules.
imported from: cl.owl
created_by: tmeehan
creation_date: 2010-07-22T11:30:33Z
数据库_交叉_引用: FMA:62855
has_exact_synonym: agranular leukocyte
有_obo_命名空间: cell
label: 无颗粒白细胞 @zh

bronchial epithelial cell
type: Class
subclass of: epithelial cell
definition: An epithelial cell of the bronchus.
imported from: cl.owl
created_by: tmeehan
creation_date: 2010-09-20T02:00:00Z
数据库_交叉_引用: BTO:0002922
有_obo_命名空间: cell

primitive red blood cell
type: Class
subclass of: native cell
definition: A large nucleated basophilic erythrocyte found in mammalian embryos. This cell type arises from the blood islands of yolk sacs and expresses different types of hemoglobins (beta-H1, gamma-1 and zeta) than adult erythrocytes. Considered a type of erythroblast as this cell type can enucleate in circulation.
imported from: cl.owl
created_by: tmeehan
creation_date: 2010-09-22T09:27:05Z
has_exact_synonym: primitive erythroblast
has_exact_synonym: primitive erythrocyte
has_exact_synonym: primitive erythroid cell
有_obo_命名空间: cell

somatic cell
type: Class
subclass of: native cell
definition: A cell of an organism that does not pass on its genetic material to the organism's offspring (i.e. a non-germ line cell).
imported from: cl.owl
created_by: tmeehan
creation_date: 2010-09-24T09:44:42Z
数据库_交叉_引用: BTO:0001268
数据库_交叉_引用: FMA:72300
数据库_交叉_引用: WBbt:0008378
有_obo_命名空间: cell
in_subset: upper level
label: 体细胞 @zh

intestinal epithelial cell
type: Class
subclass of: epithelial cell
definition: An epithelial cell of the intestine.
imported from: cl.owl
created_by: tmeehan
creation_date: 2011-03-01T05:18:31Z
有_obo_命名空间: cell

nasopharyngeal epithelial cell
type: Class
subclass of: epithelial cell
definition: Cell of the nasopharyngeal epithelium.
imported from: cl.owl
数据库_交叉_引用: CALOHA:TS-2398
has_related_synonym: nasopharynx respiratory epithelial cells

microvascular endothelial cell
type: Class
subclass of: endothelial cell
definition: Any blood vessel endothelial cell that is part of a microvascular endothelium.
imported from: cl.owl
created_by: TermGenie
creation_date: 2014-06-04T15:07:42Z
有_obo_命名空间: cell
id: CL:2000008

sensory system disease
type: Class
subclass of: nervous system disease
definition: A nervous system disease which is located in a part of the nervous system responsible for processing sensory information that consists of sensory receptors, neural pathways, and parts of the brain involved in sensory perception. Commonly recognized sensory systems are those for vision, hearing, somatic sensation (touch), taste and olfaction (smell).
有_obo_命名空间: disease_ontology
id: DOID:0050155
in_subset: DO AGR slim
in_subset: DO FlyBase slim
in_subset: DO GXD slim

Axiom
annotated source: sensory system disease
annotated property: definition
annotated target: A nervous system disease which is located in a part of the nervous system responsible for processing sensory information that consists of sensory receptors, neural pathways, and parts of the brain involved in sensory perception. Commonly recognized sensory systems are those for vision, hearing, somatic sensation (touch), taste and olfaction (smell).
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Sensory_system

lower respiratory tract disease
type: Class
subclass of: respiratory system disease
definition: A respiratory system disease which involves the lower respiratory tract.
数据库_交叉_引用: ICD9CM:478.1
数据库_交叉_引用: ICD9CM:478.19
数据库_交叉_引用: UMLS_CUI:C0029581
有_obo_命名空间: disease_ontology
id: DOID:0050161

Axiom
annotated source: lower respiratory tract disease
annotated property: definition
annotated target: A respiratory system disease which involves the lower respiratory tract.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/lower_respiratory_tract

respiratory system cancer
type: Class
subclass of: organ system cancer
subclass of: respiratory system disease
definition: An organ system cancer located_in the respiratory system that is characterized by uncontrolled cellular proliferation in the respiratory tract.
有_obo_命名空间: disease_ontology
id: DOID:0050615

Axiom
annotated source: respiratory system cancer
annotated property: definition
annotated target: An organ system cancer located_in the respiratory system that is characterized by uncontrolled cellular proliferation in the respiratory tract.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Respiratory_tract_neoplasm

organ system cancer
type: Class
subclass of: cancer
definition: A cancer that is classified based on the organ it starts in.
created_by: snadendla
creation_date: 2011-06-13T03:28:33Z
数据库_交叉_引用: MESH:D009371
有_obo_命名空间: disease_ontology
id: DOID:0050686

Axiom
annotated source: organ system cancer
annotated property: definition
annotated target: A cancer that is classified based on the organ it starts in.
数据库_交叉_引用: url:http://cancerguide.org/basic.html

cell type cancer
type: Class
subclass of: cancer
definition: A cancer that is classified by the type of cell from which it is derived.
created_by: snadendla
creation_date: 2011-06-13T03:28:50Z
有_obo_命名空间: disease_ontology
id: DOID:0050687
in_subset: DO MGI slim

Axiom
annotated source: cell type cancer
annotated property: definition
annotated target: A cancer that is classified by the type of cell from which it is derived.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://cancerguide.org/basic.html
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Cancer

anal canal cancer
type: Class
subclass of: large intestine cancer
definition: A large intestine cancer that is located_in the terminal part of the large intestine.
created_by: snadendla
creation_date: 2011-06-14T01:34:36Z
有_obo_命名空间: disease_ontology
id: DOID:0050688

Axiom
annotated source: anal canal cancer
annotated property: definition
annotated target: A large intestine cancer that is located_in the terminal part of the large intestine.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Anal_canal

eye adnexa disease
type: Class
subclass of: eye and adnexa disease
definition: An eye and adnexa disease that is located_in the adnexa of the eye.
created_by: lschriml
creation_date: 2013-12-05T12:55:42Z
有_obo_命名空间: disease_ontology
id: DOID:0050815

Axiom
annotated source: eye adnexa disease
annotated property: definition
annotated target: An eye and adnexa disease that is located_in the adnexa of the eye.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Accessory_visual_structures

endocardium disease
type: Class
subclass of: heart disease
definition: A heart disease that is located_in the innermost layer of tissue that lines the chambers of the heart.
created_by: lschriml
creation_date: 2014-02-12T01:53:42Z
有_obo_命名空间: disease_ontology
id: DOID:0050825

Axiom
annotated source: endocardium disease
annotated property: definition
annotated target: A heart disease that is located_in the innermost layer of tissue that lines the chambers of the heart.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Endocardium
数据库_交叉_引用: url:http://people.upei.ca/lmiller/2009_CV_Endocardial_Pathology/ENDOCARDIUM-2009.pdf

artery disease
type: Class
subclass of: vascular disease
definition: A vascular disease that is located_in an artery.
created_by: lschriml
creation_date: 2014-02-12T03:08:35Z
有_obo_命名空间: disease_ontology
id: DOID:0050828

Axiom
annotated source: artery disease
annotated property: definition
annotated target: A vascular disease that is located_in an artery.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Artery#Pathology

musculoskeletal system cancer
type: Class
subclass of: organ system cancer
subclass of: musculoskeletal system disease
definition: An organ system cancer located_in the muscular and skeletal organs and characterized by uncontrolled cellular proliferation of the musculoskeletal organs.
created_by: lschriml
creation_date: 2011-07-15T02:30:51Z
has_alternative_id: DOID:0060124
has_exact_synonym: skeletal system cancer
有_obo_命名空间: disease_ontology
id: DOID:0060100

Axiom
annotated source: musculoskeletal system cancer
annotated property: definition
annotated target: An organ system cancer located_in the muscular and skeletal organs and characterized by uncontrolled cellular proliferation of the musculoskeletal organs.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Musculoskeletal_system#Diseases_and_disorders

cartilage cancer
type: Class
subclass of: connective tissue cancer
definition: A connective tissue tumor that can be a benign chondroma or a maligannt chondrosarcoma.
created_by: lschriml
creation_date: 2011-07-20T01:40:49Z
有_obo_命名空间: disease_ontology
id: DOID:0060102

Axiom
annotated source: cartilage cancer
annotated property: definition
annotated target: A connective tissue tumor that can be a benign chondroma or a maligannt chondrosarcoma.
Resource Type: ECO_0007638
数据库_交叉_引用: url:https://en.wikipedia.org/wiki/Cartilage_tumor

sensory system cancer
type: Class
subclass of: sensory system disease
subclass of: nervous system cancer
definition: A nervous system cancer that is located in the sensory system.
created_by: lschriml
creation_date: 2011-07-25T01:51:56Z
有_obo_命名空间: disease_ontology
id: DOID:0060116

Axiom
annotated source: sensory system cancer
annotated property: definition
annotated target: A nervous system cancer that is located in the sensory system.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Sensory_system

thoracic disease
type: Class
subclass of: disease of anatomical entity
definition: A disease of anatomical entity that is located_in the thoracic cavity.
created_by: lschriml
creation_date: 2011-07-25T02:23:47Z
有_obo_命名空间: disease_ontology
id: DOID:0060118
in_subset: DO AGR slim
in_subset: DO GXD slim
in_subset: DO MGI slim

Axiom
annotated source: thoracic disease
annotated property: definition
annotated target: A disease of anatomical entity that is located_in the thoracic cavity.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Thoracic_cavity

pharynx cancer
type: Class
subclass of: gastrointestinal system cancer
definition: A gastrointestinal system cancer that is located_in the pharynx.
created_by: lschriml
creation_date: 2011-07-27T01:26:34Z
数据库_交叉_引用: MESH:D010610
数据库_交叉_引用: NCI:C3325
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:95001001
数据库_交叉_引用: UMLS_CUI:C0031347
has_exact_synonym: pharyngeal neoplasm
has_exact_synonym: pharynx neoplasm
有_obo_命名空间: disease_ontology
has_related_synonym: pharyngeal cancer
id: DOID:0060119
in_subset: NCIthesaurus
in_subset: TopNodes DOcancerslim

Axiom
annotated source: pharynx cancer
annotated property: definition
annotated target: A gastrointestinal system cancer that is located_in the pharynx.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Pharynx

integumentary system cancer
type: Class
subclass of: organ system cancer
subclass of: integumentary system disease
definition: An organ system cancer that is located_in the skin, hair and nails.
created_by: lschriml
creation_date: 2011-07-27T02:31:34Z
有_obo_命名空间: disease_ontology
id: DOID:0060122

Axiom
annotated source: integumentary system cancer
annotated property: definition
annotated target: An organ system cancer that is located_in the skin, hair and nails.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Integumentary_system

muscular disease
type: Class
subclass of: musculoskeletal system disease
definition: A musculoskeletal system disease that affects the muscles.
有_obo_命名空间: disease_ontology
id: DOID:0080000

Axiom
annotated source: muscular disease
annotated property: definition
annotated target: A musculoskeletal system disease that affects the muscles.
Resource Type: ECO_0007644
数据库_交叉_引用: url:http://www.nlm.nih.gov/medlineplus/muscledisorders.html

bone disease
type: Class
subclass of: connective tissue disease
definition: A connective tissue disease that affects the structure or development of bone or causes an impairment of normal bone function.
has_alternative_id: DOID:1290
数据库_交叉_引用: ICD10CM:M89.9
数据库_交叉_引用: MESH:D001847
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:76069003
数据库_交叉_引用: UMLS_CUI:C0005940
有_obo_命名空间: disease_ontology
has_related_synonym: skeletal disease
id: DOID:0080001

Axiom
annotated source: bone disease
annotated property: definition
annotated target: A connective tissue disease that affects the structure or development of bone or causes an impairment of normal bone function.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Bone_disease

corneal disease
type: Class
subclass of: eye disease
definition: An eye disease that affects the cornea, which is the transparent surface of the eye that assists in light refraction.
has_alternative_id: DOID:2284
数据库_交叉_引用: ICD10CM:H18.9
数据库_交叉_引用: ICD9CM:371.9
数据库_交叉_引用: MESH:D003316
数据库_交叉_引用: NCI:C26731
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:15250008
数据库_交叉_引用: UMLS_CUI:C0010034
有_obo_命名空间: disease_ontology
id: DOID:10124
in_subset: NCIthesaurus

Axiom
annotated source: corneal disease
annotated property: definition
annotated target: An eye disease that affects the cornea, which is the transparent surface of the eye that assists in light refraction.
Resource Type: ECO_0007636
数据库_交叉_引用: url:https://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&ns=ncit&code=C26731

intestinal cancer
type: Class
subclass of: gastrointestinal system cancer
subclass of: intestinal disease
definition: A gastrointestinal system cancer that is located_in the intestine.
数据库_交叉_引用: ICD10CM:C26.0
数据库_交叉_引用: ICD9CM:159.0
数据库_交叉_引用: MESH:D007414
数据库_交叉_引用: NCI2004_11_17:C4572
数据库_交叉_引用: NCI:C4572
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:93838000
数据库_交叉_引用: UMLS_CUI:C0346627
has_exact_synonym: malignant intestinal tumors
has_exact_synonym: malignant neoplasm of intestine
有_obo_命名空间: disease_ontology
id: DOID:10155
in_subset: NCIthesaurus
in_subset: TopNodes DOcancerslim

Axiom
annotated source: intestinal cancer
annotated property: definition
annotated target: A gastrointestinal system cancer that is located_in the intestine.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Intestine

stomach cancer
type: Class
subclass of: gastrointestinal system cancer
subclass of: stomach disease
definition: A gastrointestinal system cancer that is located_in the stomach.
has_alternative_id: DOID:10539
has_alternative_id: DOID:10542
has_alternative_id: DOID:10543
has_alternative_id: DOID:4713
数据库_交叉_引用: GARD:7704
数据库_交叉_引用: ICD10CM:C16
数据库_交叉_引用: ICD10CM:C16.2
数据库_交叉_引用: ICD10CM:C16.5
数据库_交叉_引用: ICD10CM:C16.6
数据库_交叉_引用: ICD10CM:C16.9
数据库_交叉_引用: ICD9CM:151
数据库_交叉_引用: ICD9CM:151.4
数据库_交叉_引用: ICD9CM:151.5
数据库_交叉_引用: ICD9CM:151.6
数据库_交叉_引用: ICD9CM:151.9
数据库_交叉_引用: MESH:D013274
数据库_交叉_引用: NCI:C3387
数据库_交叉_引用: NCI:C9331
数据库_交叉_引用: OMIM:137215
数据库_交叉_引用: OMIM:613659
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:93717002
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:93818001
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:93867004
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:94074003
数据库_交叉_引用: UMLS_CUI:C0024623
数据库_交叉_引用: UMLS_CUI:C0038356
数据库_交叉_引用: UMLS_CUI:C0153421
数据库_交叉_引用: UMLS_CUI:C0153422
数据库_交叉_引用: UMLS_CUI:C0153423
has_exact_synonym: Ca body - stomach
has_exact_synonym: Ca lesser curvature - stomach
has_exact_synonym: ca greater curvature of stomach
has_exact_synonym: gastric cancer
has_exact_synonym: gastric neoplasm
has_exact_synonym: malignant neoplasm of body of stomach
has_exact_synonym: malignant neoplasm of lesser curve of stomach
has_exact_synonym: malignant tumor of body of stomach
has_exact_synonym: malignant tumor of greater curve of stomach
has_exact_synonym: malignant tumor of lesser curve of stomach
有_obo_命名空间: disease_ontology
id: DOID:10534
in_subset: DO FlyBase slim
in_subset: DO cancer slim
in_subset: NCIthesaurus
in_subset: TopNodes DOcancerslim
comment: OMIM mapping confirmed by DO. [SN].

Axiom
annotated source: stomach cancer
annotated property: definition
annotated target: A gastrointestinal system cancer that is located_in the stomach.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://cancergenome.nih.gov/cancersselected/stomach-esophagealcancer
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Stomach

lens disease
type: Class
subclass of: eye disease
definition: An eye disease that affects the lens of the eye, which is the transparent disc that focuses light to the photosensors in the back of the eye.
数据库_交叉_引用: ICD10CM:H25-H28
数据库_交叉_引用: ICD10CM:H27.9
数据库_交叉_引用: MESH:D007905
数据库_交叉_引用: NCI:C26812
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:10810001
数据库_交叉_引用: UMLS_CUI:C0023308
有_obo_命名空间: disease_ontology
id: DOID:110
in_subset: NCIthesaurus

Axiom
annotated source: lens disease
annotated property: definition
annotated target: An eye disease that affects the lens of the eye, which is the transparent disc that focuses light to the photosensors in the back of the eye.
Resource Type: ECO_0007638
数据库_交叉_引用: url:https://en.wikipedia.org/wiki/Lens_(anatomy)

ovarian disease
type: Class
subclass of: gonadal disease
subclass of: female reproductive system disease
definition: A female reproductive system disease that is located_in the ovary.
数据库_交叉_引用: MESH:D010049
数据库_交叉_引用: NCI:C26841
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:5552004
数据库_交叉_引用: UMLS_CUI:C0029928
有_obo_命名空间: disease_ontology
id: DOID:1100
in_subset: NCIthesaurus

Axiom
annotated source: ovarian disease
annotated property: definition
annotated target: A female reproductive system disease that is located_in the ovary.
数据库_交叉_引用: url:https://medlineplus.gov/ovariandisorders.html

urinary bladder cancer
type: Class
subclass of: bladder disease
subclass of: urinary system cancer
definition: An urinary system cancer that results_in malignant growth located_in the urinary bladder.
has_alternative_id: DOID:5428
数据库_交叉_引用: GARD:12210
数据库_交叉_引用: ICD10CM:C67
数据库_交叉_引用: ICD10CM:C67.9
数据库_交叉_引用: ICD9CM:188
数据库_交叉_引用: ICD9CM:188.9
数据库_交叉_引用: KEGG:05219
数据库_交叉_引用: MESH:D001749
数据库_交叉_引用: NCI2004_11_17:C2901
数据库_交叉_引用: NCI:C2901
数据库_交叉_引用: NCI:C9334
数据库_交叉_引用: OMIM:109800
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:93689003
数据库_交叉_引用: UMLS_CUI:C0005684
数据库_交叉_引用: UMLS_CUI:C0005695
has_exact_synonym: bladder cancer
has_exact_synonym: tumor of the bladder
有_obo_命名空间: disease_ontology
id: DOID:11054
in_subset: NCIthesaurus
in_subset: TopNodes DOcancerslim
comment: OMIM mapping confirmed by DO. [SN].

Axiom
annotated source: urinary bladder cancer
annotated property: definition
annotated target: An urinary system cancer that results_in malignant growth located_in the urinary bladder.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Bladder_cancer

heart disease
type: Class
subclass of: cardiovascular system disease
definition: A cardiovascular system disease that involves the heart.
数据库_交叉_引用: ICD10CM:I51.9
数据库_交叉_引用: ICD9CM:429.9
数据库_交叉_引用: MESH:D006331
数据库_交叉_引用: NCI:C3079
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:56265001
数据库_交叉_引用: UMLS_CUI:C0018799
有_obo_命名空间: disease_ontology
id: DOID:114
in_subset: DO FlyBase slim
in_subset: NCIthesaurus

Axiom
annotated source: heart disease
annotated property: definition
annotated target: A cardiovascular system disease that involves the heart.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Heart_disease

fallopian tube endometriosis
type: Class
subclass of: fallopian tube disease
subclass of: endometriosis
definition: A female reproductive system disease characterized by the growth of endometrial tissue that is located_in the fallopian tube.
数据库_交叉_引用: ICD10CM:N80.2
数据库_交叉_引用: ICD9CM:617.2
数据库_交叉_引用: ICD9CM_2006:617.2
数据库_交叉_引用: NCI:C26763
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:22611009
数据库_交叉_引用: UMLS_CUI:C0014177
has_exact_synonym: Endometriosis of fallopian tube
有_obo_命名空间: disease_ontology
id: DOID:11424
in_subset: NCIthesaurus

Axiom
annotated source: fallopian tube endometriosis
annotated property: definition
annotated target: A female reproductive system disease characterized by the growth of endometrial tissue that is located_in the fallopian tube.
Resource Type: ECO_0007638
数据库_交叉_引用: url:https://en.wikipedia.org/wiki/Endometriosis

endometriosis of intestine
type: Class
subclass of: endometriosis
subclass of: intestinal disease
definition: A female reproductive system disease characterized by the growth of endometrial tissue that is located_in the intestine.
数据库_交叉_引用: ICD10CM:N80.5
数据库_交叉_引用: ICD9CM:617.5
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:5562006
数据库_交叉_引用: UMLS_CUI:C0156347
有_obo_命名空间: disease_ontology
id: DOID:11428

Axiom
annotated source: endometriosis of intestine
annotated property: definition
annotated target: A female reproductive system disease characterized by the growth of endometrial tissue that is located_in the intestine.
Resource Type: ECO_0007645
数据库_交叉_引用: url:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2653346/

endometriosis of ovary
type: Class
subclass of: ovarian disease
subclass of: endometriosis
definition: A female reproductive system disease characterized by the growth of endometrial tissue that is located_in the ovary.
has_alternative_id: DOID:11426
数据库_交叉_引用: ICD10CM:N80.1
数据库_交叉_引用: ICD9CM:617.1
数据库_交叉_引用: NCI:C27628
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:31007005
数据库_交叉_引用: UMLS_CUI:C0156344
has_exact_synonym: ovarian endometriosis
有_obo_命名空间: disease_ontology
id: DOID:11432
in_subset: NCIthesaurus

Axiom
annotated source: endometriosis of ovary
annotated property: definition
annotated target: A female reproductive system disease characterized by the growth of endometrial tissue that is located_in the ovary.
Resource Type: ECO_0007638
数据库_交叉_引用: url:https://en.wikipedia.org/wiki/Endometriosis

heart cancer
type: Class
subclass of: heart disease
subclass of: cardiovascular cancer
definition: A cardiovascular cancer located_in the heart.
has_alternative_id: DOID:9918
数据库_交叉_引用: GARD:2619
数据库_交叉_引用: ICD10CM:C38.0
数据库_交叉_引用: ICD9CM:164.1
数据库_交叉_引用: MESH:D006338
数据库_交叉_引用: NCI2004_11_17:C3081
数据库_交叉_引用: NCI2004_11_17:C3548
数据库_交叉_引用: NCI:C3081
数据库_交叉_引用: NCI:C3548
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:93825008
数据库_交叉_引用: UMLS_CUI:C0018809
数据库_交叉_引用: UMLS_CUI:C0153500
has_exact_synonym: Cardiac tumor
has_exact_synonym: Tumour of heart
has_exact_synonym: malignant Cardiac tumor
has_exact_synonym: malignant neoplasm of heart
有_obo_命名空间: disease_ontology
id: DOID:117
in_subset: NCIthesaurus

Axiom
annotated source: heart cancer
annotated property: definition
annotated target: A cardiovascular cancer located_in the heart.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Heart_cancer

bladder neck cancer
type: Class
subclass of: urinary bladder cancer
数据库_交叉_引用: ICD10CM:C67.5
数据库_交叉_引用: ICD9CM:188.5
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:94124002
数据库_交叉_引用: UMLS_CUI:C0153613
has_exact_synonym: malignant neoplasm of urinary bladder neck
has_exact_synonym: malignant tumor of bladder neck
有_obo_命名空间: disease_ontology
id: DOID:11809

ureter cancer
type: Class
subclass of: ureteral disease
subclass of: urinary system cancer
definition: A urinary system cancer that is located_in the ureter.
数据库_交叉_引用: ICD10CM:C66
数据库_交叉_引用: ICD9CM:189.2
数据库_交叉_引用: MESH:D014516
数据库_交叉_引用: NCI2004_11_17:C7543
数据库_交叉_引用: NCI:C7543
数据库_交叉_引用: OMIM:191600
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:94121005
数据库_交叉_引用: UMLS_CUI:C0153619
has_exact_synonym: malignant tumour of ureter
has_exact_synonym: malignant ureteral tumor
有_obo_命名空间: disease_ontology
id: DOID:11819
in_subset: NCIthesaurus
in_subset: TopNodes DOcancerslim
comment: OMIM mapping confirmed by DO. [SN].

Axiom
annotated source: ureter cancer
annotated property: definition
annotated target: A urinary system cancer that is located_in the ureter.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Ureter_cancer

vaginal cancer
type: Class
subclass of: female reproductive organ cancer
subclass of: vaginal disease
definition: A female reproductive system cancer that is located_in the vagina.
has_alternative_id: DOID:1902
数据库_交叉_引用: CSP2005:2016-2004
数据库_交叉_引用: GARD:9348
数据库_交叉_引用: ICD10CM:C52
数据库_交叉_引用: ICD9CM:184.0
数据库_交叉_引用: ICD9CM_2006:184.0
数据库_交叉_引用: MESH:D014625
数据库_交叉_引用: NCI2004_11_17:C3437
数据库_交叉_引用: NCI2004_11_17:C7410
数据库_交叉_引用: NCI:C3437
数据库_交叉_引用: NCI:C7410
数据库_交叉_引用: UMLS_CUI:C0042237
数据库_交叉_引用: UMLS_CUI:C0042258
has_exact_synonym: malignant neoplasm of vagina
has_exact_synonym: malignant tumor of vagina
has_exact_synonym: malignant vaginal tumor
has_exact_synonym: neoplasm of vagina
has_exact_synonym: vagina neoplasm
has_exact_synonym: vaginal tumor
有_obo_命名空间: disease_ontology
id: DOID:119
in_subset: NCIthesaurus
in_subset: TopNodes DOcancerslim

Axiom
annotated source: vaginal cancer
annotated property: definition
annotated target: A female reproductive system cancer that is located_in the vagina.
Resource Type: ECO_0007637
Resource Type: ECO_0007641
数据库_交叉_引用: url:http://www.cancer.gov/dictionary?CdrID=523460

tracheal cancer
type: Class
subclass of: respiratory system cancer
subclass of: tracheal disease
definition: A respiratory system cancer that is located_in the trachea.
数据库_交叉_引用: ICD10CM:C33
数据库_交叉_引用: ICD9CM:162.0
数据库_交叉_引用: MTH:NOCODE
数据库_交叉_引用: NCI2004_11_17:C9346
数据库_交叉_引用: NCI:C9346
数据库_交叉_引用: UMLS_CUI:C0153489
有_obo_命名空间: disease_ontology
id: DOID:11920
in_subset: NCIthesaurus
in_subset: TopNodes DOcancerslim

Axiom
annotated source: tracheal cancer
annotated property: definition
annotated target: A respiratory system cancer that is located_in the trachea.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Lung_cancer

head and neck cancer
type: Class
subclass of: organ system cancer
definition: An organ system cancer that arises in the head or neck region. This region includes the nasal cavity, sinuses, lips, mouth, salivary glands, throat, or larynx.
数据库_交叉_引用: CSP2005:2005-4325
数据库_交叉_引用: GARD:12425
数据库_交叉_引用: MESH:D006258
数据库_交叉_引用: MTH:NOCODE
数据库_交叉_引用: NCI:C3077
数据库_交叉_引用: UMLS_CUI:C0018671
has_exact_synonym: head and neck neoplasm
has_exact_synonym: head and neck tumours
has_exact_synonym: head/neck neoplasm
has_exact_synonym: tumor of head and neck
有_obo_命名空间: disease_ontology
id: DOID:11934
in_subset: DO MGI slim
in_subset: NCIthesaurus
in_subset: TopNodes DOcancerslim

Axiom
annotated source: head and neck cancer
annotated property: definition
annotated target: An organ system cancer that arises in the head or neck region. This region includes the nasal cavity, sinuses, lips, mouth, salivary glands, throat, or larynx.
Resource Type: ECO_0007637
Resource Type: ECO_0007638
Resource Type: ECO_0007641
Resource Type: ECO_0007645
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Head_and_neck_cancer
数据库_交叉_引用: url:http://www.cancer.gov/cancertopics/factsheet/Sites-Types/head-and-neck
数据库_交叉_引用: url:http://www.cancer.gov/dictionary?CdrID=257519
数据库_交叉_引用: url:http://www.iarc.fr/en/publications/pdfs-online/pat-gen/bb9/index.php

female reproductive organ cancer
type: Class
subclass of: reproductive organ cancer
subclass of: female reproductive system disease
definition: A reproductive organ cancer that is manifested in the female genitals. This includes organs such as the ovaries, fallopian tubes, uterus, cervix, vagina and vulva.
has_alternative_id: DOID:1244
has_alternative_id: DOID:1281
数据库_交叉_引用: ICD10CM:C57
数据库_交叉_引用: ICD9CM:184
数据库_交叉_引用: MESH:D005833
数据库_交叉_引用: NCI2004_11_17:C4913
数据库_交叉_引用: NCI:C3053
数据库_交叉_引用: NCI:C4913
数据库_交叉_引用: UMLS_CUI:C0017416
数据库_交叉_引用: UMLS_CUI:C0153585
数据库_交叉_引用: UMLS_CUI:C0699889
has_exact_synonym: female reproductive cancer
has_exact_synonym: malignant Gynecologic tumor
has_exact_synonym: malignant neoplasm of female genital organ
有_obo_命名空间: disease_ontology
id: DOID:120
in_subset: NCIthesaurus

Axiom
annotated source: female reproductive organ cancer
annotated property: definition
annotated target: A reproductive organ cancer that is manifested in the female genitals. This includes organs such as the ovaries, fallopian tubes, uterus, cervix, vagina and vulva.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Template:Female_genital_neoplasia
数据库_交叉_引用: url:http://www.wrongdiagnosis.com/g/genital_system_cancer/intro.htm

vaginal disease
type: Class
subclass of: female reproductive system disease
definition: A female reproductive system disease that is located_in the vagina.
数据库_交叉_引用: MESH:D014623
数据库_交叉_引用: NCI:C26910
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:25658005
数据库_交叉_引用: UMLS_CUI:C0042251
有_obo_命名空间: disease_ontology
id: DOID:121
in_subset: NCIthesaurus

Axiom
annotated source: vaginal disease
annotated property: definition
annotated target: A female reproductive system disease that is located_in the vagina.
Resource Type: ECO_0007638
数据库_交叉_引用: url:https://en.wikipedia.org/wiki/Vaginal_disease

sigmoid colon cancer
type: Class
subclass of: colon cancer
数据库_交叉_引用: ICD10CM:C18.7
数据库_交叉_引用: ICD9CM:153.3
数据库_交叉_引用: MESH:D012811
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:94006002
数据库_交叉_引用: UMLS_CUI:C0153436
has_exact_synonym: Ca sigmoid colon
has_exact_synonym: malignant tumor of sigmoid colon
有_obo_命名空间: disease_ontology
id: DOID:12192

leukemia
type: Class
subclass of: hematologic cancer
definition: A cancer that affects the blood or bone marrow characterized by an abnormal proliferation of blood cells.
has_alternative_id: DOID:9145
数据库_交叉_引用: ICD10CM:C95
数据库_交叉_引用: ICD10CM:C95.9
数据库_交叉_引用: ICD10CM:C95.90
数据库_交叉_引用: ICD9CM:208
数据库_交叉_引用: ICD9CM:208.9
数据库_交叉_引用: MESH:D007938
数据库_交叉_引用: NCI:C3161
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:87163000
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:93143009
数据库_交叉_引用: UMLS_CUI:C0023418
有_obo_命名空间: disease_ontology
id: DOID:1240
in_subset: DO cancer slim
in_subset: NCIthesaurus

Axiom
annotated source: leukemia
annotated property: definition
annotated target: A cancer that affects the blood or bone marrow characterized by an abnormal proliferation of blood cells.
Resource Type: ECO_0007637
Resource Type: ECO_0007638
Resource Type: ECO_0007641
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Leukemia
数据库_交叉_引用: url:http://www.cancer.gov/dictionary?CdrID=45343

globe disease
type: Class
subclass of: eye disease
definition: An eye disease that involves the globe of the eye.
数据库_交叉_引用: ICD10CM:H44.39
数据库_交叉_引用: ICD9CM:360.29
数据库_交叉_引用: UMLS_CUI:C0154780
有_obo_命名空间: disease_ontology
id: DOID:1242

Axiom
annotated source: globe disease
annotated property: definition
annotated target: An eye disease that involves the globe of the eye.
Resource Type: ECO_0007638
数据库_交叉_引用: url:https://en.wikipedia.org/wiki/Globe_(human_eye)

capillary disease
type: Class
subclass of: vascular disease
definition: A vascular disease that is located_in the capillaries.
数据库_交叉_引用: ICD10CM:I78
数据库_交叉_引用: ICD10CM:I78.9
数据库_交叉_引用: ICD9CM:448
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:57223003
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:58729003
数据库_交叉_引用: UMLS_CUI:C0155765
has_exact_synonym: disease of capillaries
有_obo_命名空间: disease_ontology
id: DOID:1271

Axiom
annotated source: capillary disease
annotated property: definition
annotated target: A vascular disease that is located_in the capillaries.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Capillary#Pathophysiology

choroid cancer
type: Class
subclass of: choroid disease
subclass of: uveal cancer
has_alternative_id: DOID:12760
数据库_交叉_引用: ICD10CM:C69.3
数据库_交叉_引用: ICD9CM:190.6
数据库_交叉_引用: MESH:D002830
数据库_交叉_引用: NCI2004_11_17:C2949
数据库_交叉_引用: NCI2004_11_17:C3566
数据库_交叉_引用: NCI:C2949
数据库_交叉_引用: NCI:C3566
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:93755007
数据库_交叉_引用: UMLS_CUI:C0008523
数据库_交叉_引用: UMLS_CUI:C0153630
has_exact_synonym: Choroidal tumor
has_exact_synonym: choroid neoplasm
has_exact_synonym: malignant tumor of choroid
has_exact_synonym: malignant tumor of the Choroid
has_exact_synonym: neoplasm of choroid
有_obo_命名空间: disease_ontology
id: DOID:12759
in_subset: NCIthesaurus

rectal disease
type: Class
subclass of: intestinal disease
数据库_交叉_引用: MESH:D012002
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:5964004
数据库_交叉_引用: UMLS_CUI:C0034882
有_obo_命名空间: disease_ontology
id: DOID:1285

cardiovascular system disease
type: Class
subclass of: disease of anatomical entity
definition: A disease of anatomical entity which occurs in the blood, heart, blood vessels or the lymphatic system that passes nutrients (such as amino acids and electrolytes), gases, hormones, blood cells or lymph to and from cells in the body to help fight diseases and help stabilize body temperature and pH to maintain homeostasis.
has_alternative_id: DOID:73
数据库_交叉_引用: ICD9CM:429.2
数据库_交叉_引用: MESH:D002318
数据库_交叉_引用: NCI:C2931
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:49601007
数据库_交叉_引用: UMLS_CUI:C0007222
has_exact_synonym: disease of subdivision of hemolymphoid system
有_obo_命名空间: disease_ontology
id: DOID:1287
in_subset: DO AGR slim
in_subset: DO GXD slim
in_subset: DO MGI slim
in_subset: NCIthesaurus

Axiom
annotated source: cardiovascular system disease
annotated property: definition
annotated target: A disease of anatomical entity which occurs in the blood, heart, blood vessels or the lymphatic system that passes nutrients (such as amino acids and electrolytes), gases, hormones, blood cells or lymph to and from cells in the body to help fight diseases and help stabilize body temperature and pH to maintain homeostasis.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Circulatory_system

central nervous system leukemia
type: Class
subclass of: leukemia
subclass of: central nervous system hematologic cancer
definition: A hematologic cancer located_in the central nervous system.
数据库_交叉_引用: NCI2004_11_17:C5440
数据库_交叉_引用: NCI:C5440
数据库_交叉_引用: UMLS_CUI:C1332884
has_exact_synonym: Leukemia of the CNS
有_obo_命名空间: disease_ontology
id: DOID:12969
in_subset: NCIthesaurus

Axiom
annotated source: central nervous system leukemia
annotated property: definition
annotated target: A hematologic cancer located_in the central nervous system.
Resource Type: ECO_0007645

brain cancer
type: Class
subclass of: central nervous system cancer
subclass of: brain disease
definition: A central nervous system cancer that is characterized by the growth of abnormal cells in the tissues of the brain.
has_alternative_id: DOID:2125
has_alternative_id: DOID:2126
has_alternative_id: DOID:3543
has_alternative_id: DOID:6649
has_alternative_id: DOID:911
数据库_交叉_引用: CSP2005:2006-2736
数据库_交叉_引用: ICD10CM:C71
数据库_交叉_引用: ICD10CM:C71.9
数据库_交叉_引用: ICD9CM:191
数据库_交叉_引用: ICD9CM:191.9
数据库_交叉_引用: ICD9CM:239.6
数据库_交叉_引用: MESH:D001932
数据库_交叉_引用: NCI2004_11_17:C2907
数据库_交叉_引用: NCI2004_11_17:C3568
数据库_交叉_引用: NCI2004_11_17:C4952
数据库_交叉_引用: NCI2004_11_17:C4954
数据库_交叉_引用: NCI2004_11_17:C5115
数据库_交叉_引用: NCI2004_11_17:C7710
数据库_交叉_引用: NCI:C2907
数据库_交叉_引用: NCI:C3568
数据库_交叉_引用: NCI:C4952
数据库_交叉_引用: NCI:C4954
数据库_交叉_引用: NCI:C5115
数据库_交叉_引用: NCI:C7710
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:93727008
数据库_交叉_引用: UMLS_CUI:C0006118
数据库_交叉_引用: UMLS_CUI:C0153633
数据库_交叉_引用: UMLS_CUI:C0220624
数据库_交叉_引用: UMLS_CUI:C0750974
数据库_交叉_引用: UMLS_CUI:C0750979
数据库_交叉_引用: UMLS_CUI:C1334557
has_exact_synonym: BT - Brain tumour
has_exact_synonym: adult brain tumor
has_exact_synonym: adult malignant brain neoplasm
has_exact_synonym: brain neoplasm
has_exact_synonym: brain neoplasm, adult
has_exact_synonym: malignant brain tumour
has_exact_synonym: malignant primary brain neoplasm
has_exact_synonym: malignant primary brain tumor
has_exact_synonym: malignant tumor of Brain
has_exact_synonym: malignant tumor of adult brain
has_exact_synonym: neoplasm of brain
has_exact_synonym: primary brain neoplasm
has_exact_synonym: primary brain tumor
has_exact_synonym: primary malignant neoplasm of brain
has_exact_synonym: tumor of the Brain
有_obo_命名空间: disease_ontology
id: DOID:1319
in_subset: DO FlyBase slim
in_subset: DO cancer slim
in_subset: NCIthesaurus
in_subset: TopNodes DOcancerslim

Axiom
annotated source: brain cancer
annotated property: definition
annotated target: A central nervous system cancer that is characterized by the growth of abnormal cells in the tissues of the brain.
Resource Type: ECO_0007637
Resource Type: ECO_0007641
数据库_交叉_引用: url:http://www.cancer.gov/dictionary?CdrID=387264

lung cancer
type: Class
subclass of: respiratory system cancer
subclass of: lung disease
definition: A respiratory system cancer that is located_in the lung.
has_alternative_id: DOID:13075
has_alternative_id: DOID:1322
has_alternative_id: DOID:9881
数据库_交叉_引用: ICD10CM:C34.1
数据库_交叉_引用: ICD10CM:C34.2
数据库_交叉_引用: ICD10CM:C34.3
数据库_交叉_引用: ICD9CM:162.3
数据库_交叉_引用: ICD9CM:162.4
数据库_交叉_引用: ICD9CM:162.5
数据库_交叉_引用: ICD9CM:162.8
数据库_交叉_引用: OMIM:211980
数据库_交叉_引用: OMIM:608935
数据库_交叉_引用: OMIM:612571
数据库_交叉_引用: OMIM:612593
数据库_交叉_引用: OMIM:614210
数据库_交叉_引用: UMLS_CUI:C0024624
数据库_交叉_引用: UMLS_CUI:C0153491
数据库_交叉_引用: UMLS_CUI:C0153492
数据库_交叉_引用: UMLS_CUI:C0153493
有_obo_命名空间: disease_ontology
has_related_synonym: lung neoplasm
id: DOID:1324
in_subset: TopNodes DOcancerslim

Axiom
annotated source: lung cancer
annotated property: definition
annotated target: A respiratory system cancer that is located_in the lung.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Lung_cancer

endometrial cancer
type: Class
subclass of: endometriosis
subclass of: uterine cancer
definition: A uterine cancer that is located_in tissues lining the uterus.
has_alternative_id: DOID:5654
数据库_交叉_引用: EFO:0004230
数据库_交叉_引用: GARD:11981
数据库_交叉_引用: ICD10CM:C54.1
数据库_交叉_引用: KEGG:05213
数据库_交叉_引用: MESH:D016889
数据库_交叉_引用: NCI2004_11_17:C27815
数据库_交叉_引用: NCI2004_11_17:C3012
数据库_交叉_引用: NCI:C27815
数据库_交叉_引用: NCI:C3012
数据库_交叉_引用: OMIM:608089
数据库_交叉_引用: UMLS_CUI:C0007103
数据库_交叉_引用: UMLS_CUI:C0014170
has_exact_synonym: endometrial Ca
has_exact_synonym: endometrial neoplasm
has_exact_synonym: malignant endometrial neoplasm
has_exact_synonym: malignant neoplasm of endometrium
has_exact_synonym: neoplasm of endometrium
has_exact_synonym: primary malignant neoplasm of endometrium
has_exact_synonym: tumor of Endometrium
有_obo_命名空间: disease_ontology
id: DOID:1380
in_subset: DO cancer slim
in_subset: NCIthesaurus

Axiom
annotated source: endometrial cancer
annotated property: definition
annotated target: A uterine cancer that is located_in tissues lining the uterus.
Resource Type: ECO_0007637
Resource Type: ECO_0007641
数据库_交叉_引用: url:http://www.cancer.gov/dictionary?CdrID=444987

anus cancer
type: Class
subclass of: anus disease
subclass of: large intestine cancer
definition: A large intestine cancer that is located_in the anus.
has_alternative_id: DOID:12240
数据库_交叉_引用: GARD:9300
数据库_交叉_引用: ICD10CM:C21.0
数据库_交叉_引用: ICD10CM:C21.1
数据库_交叉_引用: ICD9CM:154.2
数据库_交叉_引用: ICD9CM:154.3
数据库_交叉_引用: NCI2004_11_17:C7379
数据库_交叉_引用: NCI:C7379
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:93669004
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:93676009
数据库_交叉_引用: UMLS_CUI:C0153445
数据库_交叉_引用: UMLS_CUI:C0153446
has_exact_synonym: anal cancer
has_exact_synonym: malignant anal tumor
有_obo_命名空间: disease_ontology
id: DOID:14110
in_subset: NCIthesaurus

Axiom
annotated source: anus cancer
annotated property: definition
annotated target: A large intestine cancer that is located_in the anus.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Anus

choroid disease
type: Class
subclass of: uveal disease
数据库_交叉_引用: ICD10CM:H31.9
数据库_交叉_引用: ICD9CM:363.9
数据库_交叉_引用: MESH:D015862
数据库_交叉_引用: NCI:C34468
数据库_交叉_引用: UMLS_CUI:C0008521
有_obo_命名空间: disease_ontology
id: DOID:1417
in_subset: NCIthesaurus

ureteral disease
type: Class
subclass of: urinary system disease
definition: A urinary system disease that is located_in the ureter.
数据库_交叉_引用: MESH:D014515
数据库_交叉_引用: NCI:C27148
数据库_交叉_引用: UMLS_CUI:C0041954
有_obo_命名空间: disease_ontology
id: DOID:1426
in_subset: NCIthesaurus

Axiom
annotated source: ureteral disease
annotated property: definition
annotated target: A urinary system disease that is located_in the ureter.
Resource Type: ECO_0007644
数据库_交叉_引用: url:http://www.nlm.nih.gov/medlineplus/ureteraldisorders.html

disease of cellular proliferation
type: Class
subclass of: disease
definition: A disease that is characterized by abnormally rapid cell division.
has_alternative_id: DOID:0000818
has_exact_synonym: cell process disease
has_exact_synonym: neoplasm
有_obo_命名空间: disease_ontology
id: DOID:14566
in_subset: DO FlyBase slim

Axiom
annotated source: disease of cellular proliferation
annotated property: definition
annotated target: A disease that is characterized by abnormally rapid cell division.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/w/index.php?title=Cell_proliferation

eye and adnexa disease
type: Class
subclass of: sensory system disease
definition: A sensory system disease that is located_in the eye or the adnexa of the eye.
数据库_交叉_引用: ICD10CM:H35.00
数据库_交叉_引用: ICD9CM:362.10
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:31411005
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:42873008
数据库_交叉_引用: UMLS_CUI:C0004608
有_obo_命名空间: disease_ontology
id: DOID:1492

Axiom
annotated source: eye and adnexa disease
annotated property: definition
annotated target: A sensory system disease that is located_in the eye or the adnexa of the eye.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Category:Diseases_of_the_eye_and_adnexa

reproductive system disease
type: Class
subclass of: disease of anatomical entity
definition: A disease of anatomical entity that is located_in reproductive system organs.
has_alternative_id: DOID:6309
数据库_交叉_引用: NCI:C27613
数据库_交叉_引用: UMLS_CUI:C1335037
has_exact_synonym: genital system disease
有_obo_命名空间: disease_ontology
id: DOID:15
in_subset: DO AGR slim
in_subset: DO GXD slim
in_subset: DO MGI slim
in_subset: NCIthesaurus

Axiom
annotated source: reproductive system disease
annotated property: definition
annotated target: A disease of anatomical entity that is located_in reproductive system organs.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Reproductive_system

colon carcinoma
type: Class
subclass of: colon cancer
subclass of: carcinoma
definition: A colon cancer that has_material_basis_in abnormally proliferating cells derives_from epithelial cells.
数据库_交叉_引用: NCI2004_11_17:C4910
数据库_交叉_引用: NCI:C4910
数据库_交叉_引用: UMLS_CUI:C0699790
has_exact_synonym: Colonic carcinoma
has_exact_synonym: carcinoma of colon
有_obo_命名空间: disease_ontology
id: DOID:1520
in_subset: NCIthesaurus
comment: OMIM mapping confirmed by DO. [SN].

Axiom
annotated source: colon carcinoma
annotated property: definition
annotated target: A colon cancer that has_material_basis_in abnormally proliferating cells derives_from epithelial cells.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Carcinoma

respiratory system disease
type: Class
subclass of: disease of anatomical entity
definition: A disease of anatomical entity that located_in the respiratory system which extends from the nasal sinuses to the diaphragm.
has_alternative_id: DOID:3226
数据库_交叉_引用: ICD10CM:J96-J99
数据库_交叉_引用: ICD10CM:J98
数据库_交叉_引用: ICD9CM:510-519.99
数据库_交叉_引用: ICD9CM:519
数据库_交叉_引用: UMLS_CUI:C0029582
有_obo_命名空间: disease_ontology
id: DOID:1579
in_subset: DO AGR slim
in_subset: DO GXD slim
in_subset: DO MGI slim

Axiom
annotated source: respiratory system disease
annotated property: definition
annotated target: A disease of anatomical entity that located_in the respiratory system which extends from the nasal sinuses to the diaphragm.
Resource Type: ECO_0007638
Resource Type: ECO_0007643
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/File:Respiratory_system_complete_en.svg

integumentary system disease
type: Class
subclass of: disease of anatomical entity
definition: A disease of anatomical entity that is located_in the integumentary system comprising the skin and its appendages.
有_obo_命名空间: disease_ontology
id: DOID:16
in_subset: DO AGR slim
in_subset: DO GXD slim
in_subset: DO MGI slim

Axiom
annotated source: integumentary system disease
annotated property: definition
annotated target: A disease of anatomical entity that is located_in the integumentary system comprising the skin and its appendages.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Integumentary_system

cancer
type: Class
subclass of: disease of cellular proliferation
definition: A disease of cellular proliferation that is malignant and primary, characterized by uncontrolled cellular proliferation, local cell invasion and metastasis.
数据库_交叉_引用: ICD10CM:C80
数据库_交叉_引用: ICD10CM:C80.1
数据库_交叉_引用: ICD9CM:199
数据库_交叉_引用: ICDO:M8000/3
数据库_交叉_引用: MESH:D009369
数据库_交叉_引用: NCI:C9305
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:38807002
数据库_交叉_引用: UMLS_CUI:C0006826
has_exact_synonym: malignant neoplasm
has_exact_synonym: malignant tumor
has_exact_synonym: primary cancer
有_obo_命名空间: disease_ontology
id: DOID:162
in_subset: DO AGR slim
in_subset: DO FlyBase slim
in_subset: DO GXD slim
in_subset: NCIthesaurus
comment: Updating out dated UMLS CUI.

Axiom
annotated source: cancer
annotated property: definition
annotated target: A disease of cellular proliferation that is malignant and primary, characterized by uncontrolled cellular proliferation, local cell invasion and metastasis.
Resource Type: ECO_0007638
Resource Type: ECO_0007643
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/cancer
数据库_交叉_引用: url:http://www2.merriam-webster.com/cgi-bin/mwmednlm?book=Medical&va=cancer

musculoskeletal system disease
type: Class
subclass of: disease of anatomical entity
definition: A disease of anatomical entity that occurs in the muscular and/or skeletal system.
数据库_交叉_引用: MESH:D009140
数据库_交叉_引用: NCI:C107377
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:928000
数据库_交叉_引用: UMLS_CUI:C0026857
有_obo_命名空间: disease_ontology
id: DOID:17
in_subset: DO AGR slim
in_subset: DO GXD slim
in_subset: DO MGI slim
in_subset: NCIthesaurus

Axiom
annotated source: musculoskeletal system disease
annotated property: definition
annotated target: A disease of anatomical entity that occurs in the muscular and/or skeletal system.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Human_musculoskeletal_system#Diseases_and_disorders

endocrine gland cancer
type: Class
subclass of: organ system cancer
subclass of: endocrine system disease
definition: An organ system cancer located_in endocrine system that is characterized by uncontrolled cellular proliferation of the hormone producing glands of the endocrine system.
has_alternative_id: DOID:10009
数据库_交叉_引用: CSP2005:2009-5861
数据库_交叉_引用: ICD10CM:C75.9
数据库_交叉_引用: ICD9CM:194.9
数据库_交叉_引用: MESH:D004701
数据库_交叉_引用: NCI2004_11_17:C3010
数据库_交叉_引用: NCI2004_11_17:C3575
数据库_交叉_引用: NCI:C3010
数据库_交叉_引用: NCI:C3575
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:93780007
数据库_交叉_引用: UMLS_CUI:C0014132
数据库_交叉_引用: UMLS_CUI:C0153658
has_exact_synonym: Endocrine tumor
has_exact_synonym: endocrine neoplasm
has_exact_synonym: malignant Endocrine tumor
has_exact_synonym: malignant neoplasm of endocrine gland
has_exact_synonym: malignant tumour of endocrine gland
has_exact_synonym: neoplasm of endocrine gland
has_exact_synonym: neoplasm of endocrine system
有_obo_命名空间: disease_ontology
id: DOID:170
in_subset: NCIthesaurus
in_subset: TopNodes DOcancerslim

Axiom
annotated source: endocrine gland cancer
annotated property: definition
annotated target: An organ system cancer located_in endocrine system that is characterized by uncontrolled cellular proliferation of the hormone producing glands of the endocrine system.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Endocrine_system

vascular cancer
type: Class
subclass of: cardiovascular cancer
definition: A cardiovascular cancer that is located_in blood vessels.
has_alternative_id: DOID:3339
has_alternative_id: DOID:5454
has_alternative_id: DOID:5548
has_alternative_id: DOID:7019
has_alternative_id: DOID:7020
has_alternative_id: DOID:7392
数据库_交叉_引用: CSP2005:2007-0683
数据库_交叉_引用: MESH:D019043
数据库_交叉_引用: NCI2004_11_17:C5380
数据库_交叉_引用: NCI2004_11_17:C5383
数据库_交叉_引用: NCI2004_11_17:C5388
数据库_交叉_引用: NCI2004_11_17:C7387
数据库_交叉_引用: NCI2004_11_17:C7388
数据库_交叉_引用: NCI2004_11_17:C7390
数据库_交叉_引用: NCI:C5348
数据库_交叉_引用: NCI:C5380
数据库_交叉_引用: NCI:C5383
数据库_交叉_引用: NCI:C5388
数据库_交叉_引用: NCI:C7388
数据库_交叉_引用: NCI:C7390
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:93817006
数据库_交叉_引用: UMLS_CUI:C0282607
数据库_交叉_引用: UMLS_CUI:C0346845
数据库_交叉_引用: UMLS_CUI:C1290407
数据库_交叉_引用: UMLS_CUI:C1334616
数据库_交叉_引用: UMLS_CUI:C1334617
数据库_交叉_引用: UMLS_CUI:C1334630
数据库_交叉_引用: UMLS_CUI:C1335753
has_exact_synonym: Blood Vessel neoplasm
has_exact_synonym: Blood vessel tumor
has_exact_synonym: Blood vessel tumors
has_exact_synonym: Blood vessel tumour disorder
has_exact_synonym: Haemangiomatous tumour
has_exact_synonym: blood vessel neoplasm
has_exact_synonym: leiomyosarcoma of the renal Vein
has_exact_synonym: malignant great vessel tumor
has_exact_synonym: malignant tumor of pulmonary Vein
has_exact_synonym: malignant tumor of pulmonary artery
has_exact_synonym: malignant vascular neoplasm
has_exact_synonym: malignant vascular tumor
has_exact_synonym: neoplasm of great vessel
has_exact_synonym: pulmonary artery malignant neoplasm
has_exact_synonym: pulmonary vein malignant neoplasm
has_exact_synonym: renal vein leiomyosarcoma
has_exact_synonym: vascular tissue neoplasm
has_exact_synonym: vascular tumors
有_obo_命名空间: disease_ontology
id: DOID:175
in_subset: NCIthesaurus
in_subset: TopNodes DOcancerslim

Axiom
annotated source: vascular cancer
annotated property: definition
annotated target: A cardiovascular cancer that is located_in blood vessels.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Vascular

cardiovascular cancer
type: Class
subclass of: organ system cancer
definition: An organ system cancer that located_in the heart and blood vessels.
数据库_交叉_引用: CSP2005:2007-0683
数据库_交叉_引用: NCI2004_11_17:C4784
数据库_交叉_引用: NCI:C4784
数据库_交叉_引用: UMLS_CUI:C0497243
has_exact_synonym: Cardiovascular tumors
has_exact_synonym: cardiovascular neoplasm
有_obo_命名空间: disease_ontology
id: DOID:176
in_subset: NCIthesaurus

Axiom
annotated source: cardiovascular cancer
annotated property: definition
annotated target: An organ system cancer that located_in the heart and blood vessels.
Resource Type: ECO_0007637
Resource Type: ECO_0007641
数据库_交叉_引用: url:http://www.cancer.gov/dictionary?CdrID=44005
数据库_交叉_引用: url:http://www.healthcentral.com/heart-disease/h/cardiovascular-cancer.html

vascular disease
type: Class
subclass of: cardiovascular system disease
definition: A cardiovascular system disease that primarily affects the blood vessels which includes the arteries, veins and capillaries that carry blood to and from the heart.
has_alternative_id: DOID:0000405
has_alternative_id: DOID:2403
has_alternative_id: DOID:2869
has_alternative_id: DOID:324
has_alternative_id: DOID:325
has_alternative_id: DOID:45
数据库_交叉_引用: ICD10CM:I72.9
数据库_交叉_引用: ICD9CM:442.9
数据库_交叉_引用: MESH:D000783
数据库_交叉_引用: MESH:D014652
数据库_交叉_引用: MESH:D020758
数据库_交叉_引用: MESH:D020760
数据库_交叉_引用: NCI:C26693
数据库_交叉_引用: NCI:C35117
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:27550009
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:85659009
数据库_交叉_引用: UMLS_CUI:C0002940
数据库_交叉_引用: UMLS_CUI:C0042373
数据库_交叉_引用: UMLS_CUI:C0752127
数据库_交叉_引用: UMLS_CUI:C0752130
has_exact_synonym: vascular tissue disease
有_obo_命名空间: disease_ontology
id: DOID:178
in_subset: NCIthesaurus

Axiom
annotated source: vascular disease
annotated property: definition
annotated target: A cardiovascular system disease that primarily affects the blood vessels which includes the arteries, veins and capillaries that carry blood to and from the heart.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Vascular_disease

urinary system disease
type: Class
subclass of: disease of anatomical entity
definition: A disease of anatomical entity that is located_in kidney, ureter, bladder and urethra.
has_alternative_id: DOID:579
数据库_交叉_引用: NCI2004_11_17:C27599
数据库_交叉_引用: NCI:C27599
数据库_交叉_引用: UMLS_CUI:C1335051
has_exact_synonym: Non-neoplastic urinary tract disease
has_exact_synonym: urinary tract disease
有_obo_命名空间: disease_ontology
id: DOID:18
in_subset: DO AGR slim
in_subset: DO GXD slim
in_subset: DO MGI slim
in_subset: NCIthesaurus

Axiom
annotated source: urinary system disease
annotated property: definition
annotated target: A disease of anatomical entity that is located_in kidney, ureter, bladder and urethra.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Urinary_system

bone cancer
type: Class
subclass of: bone disease
subclass of: connective tissue cancer
definition: A connective tissue cancer that is located_in bone and is characterized by uncontrolled cellular proliferation that destroys normal bone tissue.
has_alternative_id: DOID:3348
数据库_交叉_引用: CSP2005:2019-1041
数据库_交叉_引用: MESH:D001859
数据库_交叉_引用: NCI2004_11_17:C4016
数据库_交叉_引用: NCI2004_11_17:C9343
数据库_交叉_引用: NCI:C9343
数据库_交叉_引用: UMLS_CUI:C0005967
has_exact_synonym: CA - bone cancer
has_exact_synonym: bone neoplasm
has_exact_synonym: bone tumour
has_exact_synonym: malignant bone neoplasm
has_exact_synonym: malignant bone tumour
has_exact_synonym: malignant neoplasm of bone
has_exact_synonym: malignant osseous tumor
has_exact_synonym: neoplasm of bone
has_exact_synonym: osseous tumor
有_obo_命名空间: disease_ontology
id: DOID:184
in_subset: NCIthesaurus
in_subset: TopNodes DOcancerslim

Axiom
annotated source: bone cancer
annotated property: definition
annotated target: A connective tissue cancer that is located_in bone and is characterized by uncontrolled cellular proliferation that destroys normal bone tissue.
Resource Type: ECO_0007637
数据库_交叉_引用: url:http://www.cancer.gov/cancertopics/factsheet/Sites-Types/bone
数据库_交叉_引用: url:http://www.cancer.gov/cancertopics/types/bone
数据库_交叉_引用: url:http://www.wrongdiagnosis.com/b/bone_cancer/intro.htm

jaw cancer
type: Class
subclass of: bone cancer
definition: A bone cancer and jaw disease that is located in the jaw and results in a swollen jaw, results in numbness or a tingling sensation in jaw, and results in an abnormal growth of the jaw bone.
数据库_交叉_引用: MESH:D007573
数据库_交叉_引用: UMLS_CUI:C0022364
has_exact_synonym: neoplasm of jaw
有_obo_命名空间: disease_ontology
has_related_synonym: jaw neoplasm
id: DOID:1862

Axiom
annotated source: jaw cancer
annotated property: definition
annotated target: A bone cancer and jaw disease that is located in the jaw and results in a swollen jaw, results in numbness or a tingling sensation in jaw, and results in an abnormal growth of the jaw bone.
数据库_交叉_引用: url:http://www.buzzle.com/articles/jaw-cancer-symptoms.html

skull cancer
type: Class
subclass of: bone cancer
数据库_交叉_引用: MESH:D012888
数据库_交叉_引用: NCI:C3375
数据库_交叉_引用: UMLS_CUI:C0037305
有_obo_命名空间: disease_ontology
id: DOID:1863
in_subset: NCIthesaurus

reproductive organ cancer
type: Class
subclass of: organ system cancer
subclass of: reproductive system disease
definition: An organ system cancer that is manifested in the reproductive organs.
has_alternative_id: DOID:1900
数据库_交叉_引用: NCI2004_11_17:C3674
数据库_交叉_引用: NCI:C3674
数据库_交叉_引用: UMLS_CUI:C0178830
has_exact_synonym: Reproductive tumor
has_exact_synonym: malignant reproductive system neoplasm
有_obo_命名空间: disease_ontology
has_related_synonym: cancer of reproductive system
id: DOID:193
in_subset: NCIthesaurus

Axiom
annotated source: reproductive organ cancer
annotated property: definition
annotated target: An organ system cancer that is manifested in the reproductive organs.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Reproductive_system#Examples_of_cancers

fallopian tube disease
type: Class
subclass of: female reproductive system disease
definition: A female reproductive system disease that is located_in the fallopian tube.
数据库_交叉_引用: MESH:D005184
数据库_交叉_引用: NCI:C26771
数据库_交叉_引用: UMLS_CUI:C0015556
有_obo_命名空间: disease_ontology
id: DOID:1962
in_subset: NCIthesaurus

Axiom
annotated source: fallopian tube disease
annotated property: definition
annotated target: A female reproductive system disease that is located_in the fallopian tube.
Resource Type: ECO_0007645
数据库_交叉_引用: url:https://www.ncbi.nlm.nih.gov/pubmed/21415195

fallopian tube cancer
type: Class
subclass of: female reproductive organ cancer
subclass of: fallopian tube disease
definition: A female reproductive organ cancer that is located_in fallopian tube.
has_alternative_id: DOID:1961
数据库_交叉_引用: GARD:9162
数据库_交叉_引用: ICD10CM:C57.0
数据库_交叉_引用: ICD9CM:183.2
数据库_交叉_引用: MESH:D005185
数据库_交叉_引用: MTHICD9_2006:183.2
数据库_交叉_引用: NCI2004_11_17:C3032
数据库_交叉_引用: NCI2004_11_17:C7480
数据库_交叉_引用: NCI:C3032
数据库_交叉_引用: NCI:C7480
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:93794008
数据库_交叉_引用: UMLS_CUI:C0015558
数据库_交叉_引用: UMLS_CUI:C0153579
has_exact_synonym: fallopian tube neoplasm
has_exact_synonym: malignant neoplasm of uterine tube
has_exact_synonym: malignant tumor of fallopian tube
has_exact_synonym: malignant tumour of fallopian tube
has_exact_synonym: neoplasm of fallopian tube
has_exact_synonym: tumor of the fallopian tube
has_exact_synonym: tumor, fallopian tube, malignant
有_obo_命名空间: disease_ontology
id: DOID:1964
in_subset: NCIthesaurus
in_subset: TopNodes DOcancerslim

Axiom
annotated source: fallopian tube cancer
annotated property: definition
annotated target: A female reproductive organ cancer that is located_in fallopian tube.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Fallopian_tube_cancer

rectum cancer
type: Class
subclass of: colorectal cancer
definition: A colorectal cancer that is located_in the rectum.
has_alternative_id: DOID:1989
数据库_交叉_引用: ICD10CM:C20
数据库_交叉_引用: ICD9CM:154.1
数据库_交叉_引用: MESH:D012004
数据库_交叉_引用: NCI2004_11_17:C7418
数据库_交叉_引用: NCI2004_11_17:C9382
数据库_交叉_引用: NCI:C7418
数据库_交叉_引用: NCI:C9382
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:93984006
数据库_交叉_引用: UMLS_CUI:C0007113
数据库_交叉_引用: UMLS_CUI:C0949022
has_exact_synonym: carcinoma of rectum
has_exact_synonym: carcinoma of the rectum
has_exact_synonym: malignant Rectal tumor
has_exact_synonym: malignant neoplasm of rectum
has_exact_synonym: malignant rectum tumor
has_exact_synonym: malignant tumor of rectum
has_exact_synonym: rectal cancer
有_obo_命名空间: disease_ontology
has_related_synonym: cancer of rectum
id: DOID:1993
in_subset: NCIthesaurus
in_subset: TopNodes DOcancerslim

Axiom
annotated source: rectum cancer
annotated property: definition
annotated target: A colorectal cancer that is located_in the rectum.
Resource Type: ECO_0007637
Resource Type: ECO_0007641
数据库_交叉_引用: url:http://www.cancer.gov/dictionary?CdrID=529764

connective tissue cancer
type: Class
subclass of: musculoskeletal system cancer
subclass of: connective tissue disease
definition: A musculoskeletal system cancer that is located_in connective tissue.
数据库_交叉_引用: CSP2005:2008-3809
数据库_交叉_引用: MESH:D009372
数据库_交叉_引用: UMLS_CUI:C0027656
has_exact_synonym: Tumour of connective tissue
has_exact_synonym: connective tissue neoplasm
has_exact_synonym: neoplasm of connective tissues
有_obo_命名空间: disease_ontology
id: DOID:201
in_subset: TopNodes DOcancerslim

Axiom
annotated source: connective tissue cancer
annotated property: definition
annotated target: A musculoskeletal system cancer that is located_in connective tissue.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Connective_tissue

ocular cancer
type: Class
subclass of: sensory system cancer
subclass of: eye disease
definition: A sensory system cancer located_in the eye that is characterized by uncontrolled cellular proliferation in the eye.
has_alternative_id: DOID:9985
数据库_交叉_引用: CSP2005:2018-3273
数据库_交叉_引用: ICD9CM:190.8
数据库_交叉_引用: MESH:D005134
数据库_交叉_引用: NCI2004_11_17:C3030
数据库_交叉_引用: NCI:C3030
数据库_交叉_引用: UMLS_CUI:C0015414
数据库_交叉_引用: UMLS_CUI:C0153632
has_exact_synonym: Ocular tumor
has_exact_synonym: eye neoplasm
has_exact_synonym: malignant eye neoplasm
has_exact_synonym: neoplasm of eye
has_exact_synonym: neoplasm of eye proper
有_obo_命名空间: disease_ontology
id: DOID:2174
in_subset: NCIthesaurus
in_subset: TopNodes DOcancerslim

Axiom
annotated source: ocular cancer
annotated property: definition
annotated target: A sensory system cancer located_in the eye that is characterized by uncontrolled cellular proliferation in the eye.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Eye
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Eye_neoplasm

colon cancer
type: Class
subclass of: colonic disease
subclass of: colorectal cancer
definition: A colorectal cancer that is located_in the colon.
数据库_交叉_引用: ICD10CM:C18
数据库_交叉_引用: ICD10CM:C18.9
数据库_交叉_引用: ICD9CM:153
数据库_交叉_引用: ICD9CM:153.9
数据库_交叉_引用: MESH:D003110
数据库_交叉_引用: NCI:C9242
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:93761005
数据库_交叉_引用: UMLS_CUI:C0007102
有_obo_命名空间: disease_ontology
id: DOID:219
in_subset: DO cancer slim
in_subset: NCIthesaurus
in_subset: TopNodes DOcancerslim

Axiom
annotated source: colon cancer
annotated property: definition
annotated target: A colorectal cancer that is located_in the colon.
Resource Type: ECO_0007637
Resource Type: ECO_0007641
数据库_交叉_引用: url:http://www.cancer.gov/dictionary?CdrID=44237

cervix disease
type: Class
subclass of: uterine disease
definition: A uterine disease that is located_in the cervix.
数据库_交叉_引用: MESH:D002577
数据库_交叉_引用: NCI:C40241
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:63339007
数据库_交叉_引用: UMLS_CUI:C0007867
有_obo_命名空间: disease_ontology
id: DOID:2253
in_subset: NCIthesaurus

Axiom
annotated source: cervix disease
annotated property: definition
annotated target: A uterine disease that is located_in the cervix.
数据库_交叉_引用: url:https://www.mdedge.com/obgmanagement/article/136739/gynecology/2017-update-cervical-disease

gonadal disease
type: Class
subclass of: endocrine system disease
definition: An endocrine system disease that is located_in the gonads.
数据库_交叉_引用: MESH:D006058
数据库_交叉_引用: NCI:C26786
数据库_交叉_引用: UMLS_CUI:C0018050
有_obo_命名空间: disease_ontology
id: DOID:2277
in_subset: NCIthesaurus

Axiom
annotated source: gonadal disease
annotated property: definition
annotated target: An endocrine system disease that is located_in the gonads.
Resource Type: ECO_0007645
数据库_交叉_引用: url:https://www.nature.com/subjects/gonadal-disorders

female reproductive system disease
type: Class
subclass of: reproductive system disease
definition: A reproductive system disease that impairs the ability to reproduce and is located in the uterus, vagina, cervix, ovaries or fallopian tubes.
数据库_交叉_引用: ICD9CM:629.9
数据库_交叉_引用: MESH:D005831
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:38233001
数据库_交叉_引用: UMLS_CUI:C0017411
有_obo_命名空间: disease_ontology
id: DOID:229

Axiom
annotated source: female reproductive system disease
annotated property: definition
annotated target: A reproductive system disease that impairs the ability to reproduce and is located in the uterus, vagina, cervix, ovaries or fallopian tubes.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Female_reproductive_system
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Reproductive_system_disease

colon adenocarcinoma
type: Class
subclass of: colon carcinoma
subclass of: adenocarcinoma
definition: A colon carcinoma that derives_from epithelial cells of glandular origin.
数据库_交叉_引用: NCI2004_11_17:C4349
数据库_交叉_引用: NCI:C4349
数据库_交叉_引用: UMLS_CUI:C0338106
has_exact_synonym: Colonic adenocarcinoma
has_exact_synonym: adenocarcinoma of colon
有_obo_命名空间: disease_ontology
has_related_synonym: adenocarcinoma of the colon
id: DOID:234
in_subset: DO cancer slim
in_subset: NCIthesaurus
label: 结肠腺癌 @zh

Axiom
annotated source: colon adenocarcinoma
annotated property: definition
annotated target: A colon carcinoma that derives_from epithelial cells of glandular origin.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Adenocarcinoma

renal artery disease
type: Class
subclass of: artery disease
数据库_交叉_引用: ICD9CM:593.81
数据库_交叉_引用: ICD9CM_2006:593.81
数据库_交叉_引用: NCI:C35338
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:16934004
数据库_交叉_引用: UMLS_CUI:C0268790
has_exact_synonym: renal vascular disease
has_exact_synonym: vascular disorder of kidney
有_obo_命名空间: disease_ontology
id: DOID:2388
in_subset: NCIthesaurus

ovarian cancer
type: Class
subclass of: ovarian disease
subclass of: female reproductive organ cancer
subclass of: endocrine gland cancer
definition: A female reproductive organ cancer that is located_in the ovary.
has_alternative_id: DOID:0060070
has_alternative_id: DOID:2144
has_alternative_id: DOID:9595
数据库_交叉_引用: CSP2005:2016-1387
数据库_交叉_引用: GARD:7295
数据库_交叉_引用: ICD10CM:C56
数据库_交叉_引用: ICD9CM:183.0
数据库_交叉_引用: MESH:D010051
数据库_交叉_引用: MTH:NOCODE
数据库_交叉_引用: NCI2004_11_17:C4984
数据库_交叉_引用: NCI2004_11_17:C7431
数据库_交叉_引用: NCI:C4984
数据库_交叉_引用: NCI:C7431
数据库_交叉_引用: OMIM:167000
数据库_交叉_引用: OMIM:607893
数据库_交叉_引用: ORDO:213500
数据库_交叉_引用: ORDO:213517
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:93934004
数据库_交叉_引用: UMLS_CUI:C0919267
数据库_交叉_引用: UMLS_CUI:C1140680
数据库_交叉_引用: UMLS_CUI:C1299247
has_exact_synonym: malignant Ovarian tumor
has_exact_synonym: malignant tumour of ovary
has_exact_synonym: ovarian neoplasm
has_exact_synonym: ovary neoplasm
has_exact_synonym: primary ovarian cancer
has_exact_synonym: tumor of the Ovary
有_obo_命名空间: disease_ontology
id: DOID:2394
in_subset: DO FlyBase slim
in_subset: DO rare slim
in_subset: NCIthesaurus
in_subset: TopNodes DOcancerslim
comment: Xref MGI. OMIM mapping confirmed by DO. [SN].

Axiom
annotated source: ovarian cancer
annotated property: definition
annotated target: A female reproductive organ cancer that is located_in the ovary.
Resource Type: ECO_0007637
Resource Type: ECO_0007641
数据库_交叉_引用: url:http://www.cancer.gov/dictionary?CdrID=445074

iris disease
type: Class
subclass of: uveal disease
数据库_交叉_引用: MESH:D007499
数据库_交叉_引用: NCI:C34737
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:85478004
数据库_交叉_引用: UMLS_CUI:C0022078
有_obo_命名空间: disease_ontology
id: DOID:240
in_subset: NCIthesaurus

retinal vascular disease
type: Class
subclass of: vascular disease
subclass of: retinal disease
数据库_交叉_引用: CSP2005:1114-7471
数据库_交叉_引用: NCI:C35170
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:57534004
数据库_交叉_引用: UMLS_CUI:C0154833
has_exact_synonym: retina circulation disorder
有_obo_命名空间: disease_ontology
id: DOID:2462
in_subset: NCIthesaurus

hematologic cancer
type: Class
subclass of: organ system cancer
subclass of: hematopoietic system disease
definition: An organ system cancer located in the hematological system that is characterized by uncontrolled cellular proliferation in blood, bone marrow and lymph nodes.
has_alternative_id: DOID:1034
has_alternative_id: DOID:2532
数据库_交叉_引用: CSP2005:2004-0139
数据库_交叉_引用: MESH:D019337
数据库_交叉_引用: NCI2004_11_17:C27134
数据库_交叉_引用: NCI:C27134
数据库_交叉_引用: UMLS_CUI:C0376544
has_exact_synonym: Hematologic malignancy
has_exact_synonym: Hematologic neoplasm
has_exact_synonym: Hematological tumors
has_exact_synonym: blood cancer
has_exact_synonym: hematopoietic and lymphoid system tumor
has_exact_synonym: hematopoietic cancer
has_exact_synonym: hematopoietic neoplasm
has_exact_synonym: hematopoietic tumors
has_exact_synonym: malignant hematopoietic neoplasm
有_obo_命名空间: disease_ontology
id: DOID:2531
in_subset: DO FlyBase slim
in_subset: NCIthesaurus
in_subset: TopNodes DOcancerslim

Axiom
annotated source: hematologic cancer
annotated property: definition
annotated target: An organ system cancer located in the hematological system that is characterized by uncontrolled cellular proliferation in blood, bone marrow and lymph nodes.
Resource Type: ECO_0007637
Resource Type: ECO_0007638
Resource Type: ECO_0007641
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Blood_cancer
数据库_交叉_引用: url:http://www.cancer.gov/dictionary/?CdrID=45708

kidney cancer
type: Class
subclass of: urinary system cancer
subclass of: kidney disease
definition: A urinary system cancer that is located_in the kidney.
has_alternative_id: DOID:11834
has_alternative_id: DOID:3676
数据库_交叉_引用: ICD10CM:C64
数据库_交叉_引用: ICD9CM:189.0
数据库_交叉_引用: MESH:D007680
数据库_交叉_引用: NCI:C120456
数据库_交叉_引用: NCI:C3150
数据库_交叉_引用: NCI:C7548
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:93849006
数据库_交叉_引用: UMLS_CUI:C0022665
数据库_交叉_引用: UMLS_CUI:C0494158
数据库_交叉_引用: UMLS_CUI:C0740457
has_exact_synonym: malignant neoplasm of kidney except pelvis
has_exact_synonym: malignant tumour of kidney
has_exact_synonym: renal cancer
有_obo_命名空间: disease_ontology
id: DOID:263
in_subset: NCIthesaurus
in_subset: TopNodes DOcancerslim

Axiom
annotated source: kidney cancer
annotated property: definition
annotated target: A urinary system cancer that is located_in the kidney.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Kidney_cancer

synovium cancer
type: Class
subclass of: connective tissue cancer
数据库_交叉_引用: NCI2004_11_17:C6531
数据库_交叉_引用: NCI:C6531
数据库_交叉_引用: UMLS_CUI:C1334624
has_exact_synonym: malignant tumor of Synovium
有_obo_命名空间: disease_ontology
id: DOID:2706
in_subset: NCIthesaurus

endocrine system disease
type: Class
subclass of: disease of anatomical entity
definition: A disease of anatomical entity that is located_in endocrine glands which secretes a type of hormone directly into the bloodstream to regulate the body.
数据库_交叉_引用: ICD10CM:E34.9
数据库_交叉_引用: ICD9CM:259.9
数据库_交叉_引用: MESH:D004700
数据库_交叉_引用: NCI:C3009
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:67432001
数据库_交叉_引用: UMLS_CUI:C0014130
有_obo_命名空间: disease_ontology
id: DOID:28
in_subset: DO AGR slim
in_subset: DO GXD slim
in_subset: DO MGI slim
in_subset: NCIthesaurus

Axiom
annotated source: endocrine system disease
annotated property: definition
annotated target: A disease of anatomical entity that is located_in endocrine glands which secretes a type of hormone directly into the bloodstream to regulate the body.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Endocrine_system

endometriosis
type: Class
subclass of: female reproductive system disease
definition: A female reproductive system disease characterized by the growth of endometrial tissue outside the uterine body.
数据库_交叉_引用: EFO:0001065
数据库_交叉_引用: ICD10CM:N80
数据库_交叉_引用: ICD10CM:N80.9
数据库_交叉_引用: ICD9CM:617
数据库_交叉_引用: ICD9CM:617.9
数据库_交叉_引用: MESH:D004715
数据库_交叉_引用: NCI:C3014
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:11871002
数据库_交叉_引用: UMLS_CUI:C0014175
有_obo_命名空间: disease_ontology
id: DOID:289
in_subset: NCIthesaurus

Axiom
annotated source: endometriosis
annotated property: definition
annotated target: A female reproductive system disease characterized by the growth of endometrial tissue outside the uterine body.
Resource Type: ECO_0007638
Resource Type: ECO_0007645
数据库_交叉_引用: url:https://en.wikipedia.org/?title=Endometriosis
数据库_交叉_引用: url:https://www.ncbi.nlm.nih.gov/pubmed/20574791

cervix carcinoma
type: Class
subclass of: carcinoma
subclass of: cervical cancer
definition: A cervical cancer that is located_in the cervix uteri or located_in the cervical area and that has_material_basis_in abnormally proliferating cells derives_from epithelial cells.
数据库_交叉_引用: MTH:166
数据库_交叉_引用: NCI2004_11_17:C9039
数据库_交叉_引用: NCI:C9039
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:93752005
数据库_交叉_引用: UMLS_CUI:C0302592
has_exact_synonym: cancer of cervix
has_exact_synonym: carcinoma OF CERVIX
has_exact_synonym: carcinoma cervix uteri
has_exact_synonym: carcinoma of cervix
has_exact_synonym: carcinoma of the Cervix Uteri
有_obo_命名空间: disease_ontology
id: DOID:2893
in_subset: DO cancer slim
in_subset: NCIthesaurus
comment: OMIM mapping confirmed by DO. [SN].

Axiom
annotated source: cervix carcinoma
annotated property: definition
annotated target: A cervical cancer that is located_in the cervix uteri or located_in the cervical area and that has_material_basis_in abnormally proliferating cells derives_from epithelial cells.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Cervical_cancer

adenocarcinoma
type: Class
subclass of: carcinoma
definition: A carcinoma that has_material_basis_in abnormally proliferating cells, derives_from epithelial cells, which originate in glandular tissue.
数据库_交叉_引用: MESH:D000230
数据库_交叉_引用: NCI:C2852
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:35917007
数据库_交叉_引用: UMLS_CUI:C0001418
has_exact_synonym: adenocarcinomas
有_obo_命名空间: disease_ontology
id: DOID:299
in_subset: NCIthesaurus
label: 腺癌 @zh

Axiom
annotated source: adenocarcinoma
annotated property: definition
annotated target: A carcinoma that has_material_basis_in abnormally proliferating cells, derives_from epithelial cells, which originate in glandular tissue.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Adenocarcinoma

mucinous adenocarcinoma
type: Class
subclass of: adenocarcinoma
definition: An adenocarcinoma that derives_from epithelial cells originating in glandular tissue, which produce mucin.
has_alternative_id: DOID:4532
数据库_交叉_引用: MESH:D002288
数据库_交叉_引用: NCI2004_11_17:C26712
数据库_交叉_引用: NCI2004_11_17:C27379
数据库_交叉_引用: NCI2004_11_17:C27825
数据库_交叉_引用: NCI:C26712
数据库_交叉_引用: NCI:C27379
数据库_交叉_引用: NCI:C27825
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:72495009
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:900006
数据库_交叉_引用: UMLS_CUI:C0007130
数据库_交叉_引用: UMLS_CUI:C0334368
has_exact_synonym: Mucin-Secreting adenocarcinoma
has_exact_synonym: Mucin-Secreting carcinoma
has_exact_synonym: Mucin-producing adenocarcinoma
has_exact_synonym: Mucous carcinoma
has_exact_synonym: Pseudomyxoma peritonei with unknown primary site
has_exact_synonym: mucin-producing adenocarcinoma
有_obo_命名空间: disease_ontology
id: DOID:3030
in_subset: NCIthesaurus

Axiom
annotated source: mucinous adenocarcinoma
annotated property: definition
annotated target: An adenocarcinoma that derives_from epithelial cells originating in glandular tissue, which produce mucin.
Resource Type: ECO_0007641
数据库_交叉_引用: url:http://coloncancer.about.com/od/typesofcancer/a/Mucinous_Tumor.htm
数据库_交叉_引用: url:http://medical-dictionary.thefreedictionary.com/mucinous+carcinoma

carcinoma
type: Class
subclass of: cell type cancer
definition: A cell type cancer that has_material_basis_in abnormally proliferating cells derives_from epithelial cells.
has_alternative_id: DOID:2428
has_alternative_id: DOID:6570
数据库_交叉_引用: CSP2005:2000-5801
数据库_交叉_引用: MESH:D002277
数据库_交叉_引用: MESH:D009375
数据库_交叉_引用: NCI2004_11_17:C6927
数据库_交叉_引用: NCI:C2916
数据库_交叉_引用: NCI:C3709
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:68453008
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:71298006
数据库_交叉_引用: UMLS_CUI:C0007097
数据库_交叉_引用: UMLS_CUI:C0553707
数据库_交叉_引用: UMLS_CUI:C1368683
has_exact_synonym: epithelial cancer
has_exact_synonym: epithelioma
has_exact_synonym: malignant Epithelioma
有_obo_命名空间: disease_ontology
id: DOID:305
in_subset: DO FlyBase slim
in_subset: DO cancer slim
in_subset: NCIthesaurus
label: 癌 @zh

Axiom
annotated source: carcinoma
annotated property: definition
annotated target: A cell type cancer that has_material_basis_in abnormally proliferating cells derives_from epithelial cells.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Carcinoma

nervous system cancer
type: Class
subclass of: organ system cancer
subclass of: nervous system disease
definition: An organ system cancer located_in the nervous system that affects the central or peripheral nervous system.
has_alternative_id: DOID:1193
has_alternative_id: DOID:3195
has_alternative_id: DOID:4695
数据库_交叉_引用: CSP2005:2012-5157
数据库_交叉_引用: ICD9CM:192
数据库_交叉_引用: ICD9CM:192.9
数据库_交叉_引用: MESH:D009380
数据库_交叉_引用: NCI2004_11_17:C3268
数据库_交叉_引用: NCI2004_11_17:C35562
数据库_交叉_引用: NCI:C35562
数据库_交叉_引用: UMLS_CUI:C0027665
数据库_交叉_引用: UMLS_CUI:C0153643
数据库_交叉_引用: UMLS_CUI:C1334956
has_exact_synonym: malignant neoplasm of nervous system
has_exact_synonym: neoplasm of nervous system
has_exact_synonym: nervous system neoplasm
has_exact_synonym: neural neoplasm
has_exact_synonym: neural tumor
has_exact_synonym: tumor of the nervous system
有_obo_命名空间: disease_ontology
id: DOID:3093
in_subset: NCIthesaurus

Axiom
annotated source: nervous system cancer
annotated property: definition
annotated target: An organ system cancer located_in the nervous system that affects the central or peripheral nervous system.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://emedicine.medscape.com/oncology
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Nervous_system_disease

gastrointestinal system cancer
type: Class
subclass of: organ system cancer
subclass of: gastrointestinal system disease
definition: An organ system cancer located_in gastrointestinal tract that is manifested in organs of the gastrointestinal system.
has_alternative_id: DOID:4945
has_alternative_id: DOID:8377
数据库_交叉_引用: ICD10CM:C26.9
数据库_交叉_引用: ICD9CM:239.0
数据库_交叉_引用: MESH:D004067
数据库_交叉_引用: MESH:D005770
数据库_交叉_引用: NCI2004_11_17:C3052
数据库_交叉_引用: NCI2004_11_17:C4890
数据库_交叉_引用: NCI:C3052
数据库_交叉_引用: NCI:C4890
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:93811007
数据库_交叉_引用: UMLS_CUI:C0012243
数据库_交叉_引用: UMLS_CUI:C0017185
数据库_交叉_引用: UMLS_CUI:C0685938
has_exact_synonym: GI tumor
has_exact_synonym: digestive system cancer
has_exact_synonym: gastrointestinal tract cancer
有_obo_命名空间: disease_ontology
id: DOID:3119
in_subset: DO FlyBase slim
in_subset: NCIthesaurus
in_subset: TopNodes DOcancerslim

Axiom
annotated source: gastrointestinal system cancer
annotated property: definition
annotated target: An organ system cancer located_in gastrointestinal tract that is manifested in organs of the gastrointestinal system.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Human_gastrointestinal_tract

anus disease
type: Class
subclass of: rectal disease
has_alternative_id: DOID:11479
has_alternative_id: DOID:11993
数据库_交叉_引用: MESH:D001004
数据库_交叉_引用: MTHICD9_2006:565.0
数据库_交叉_引用: NCI:C26695
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:32110003
数据库_交叉_引用: UMLS_CUI:C0003462
has_exact_synonym: Nontraumatic tear of anus
has_exact_synonym: Solitary anal ulcer
has_exact_synonym: Ulcer of anus
has_exact_synonym: anal disease
has_exact_synonym: anal fissure
has_exact_synonym: anal fissure and fistula
has_exact_synonym: anal ulcer
has_exact_synonym: fissure in ano
有_obo_命名空间: disease_ontology
id: DOID:3128
in_subset: NCIthesaurus

spinal cord disease
type: Class
subclass of: central nervous system disease
数据库_交叉_引用: ICD10CM:G95.9
数据库_交叉_引用: ICD9CM:336.9
数据库_交叉_引用: MESH:D013118
数据库_交叉_引用: NCI:C97110
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:48522003
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:95648003
数据库_交叉_引用: UMLS_CUI:C0037928
有_obo_命名空间: disease_ontology
has_related_synonym: myelopathy
id: DOID:319
in_subset: NCIthesaurus

tracheal disease
type: Class
subclass of: upper respiratory tract disease
数据库_交叉_引用: ICD10CM:S12.8
数据库_交叉_引用: MESH:D014133
数据库_交叉_引用: NCI:C35079
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:47125007
数据库_交叉_引用: UMLS_CUI:C0040580
有_obo_命名空间: disease_ontology
id: DOID:3225
in_subset: NCIthesaurus

central nervous system disease
type: Class
subclass of: nervous system disease
definition: A nervous system disease that affects either the spinal cord (myelopathy) or brain (encephalopathy) of the central nervous system.
数据库_交叉_引用: ICD10CM:G96.9
数据库_交叉_引用: MESH:D002493
数据库_交叉_引用: NCI:C2934
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:23853001
数据库_交叉_引用: UMLS_CUI:C0007682
有_obo_命名空间: disease_ontology
id: DOID:331
in_subset: DO AGR slim
in_subset: DO GXD slim
in_subset: NCIthesaurus

Axiom
annotated source: central nervous system disease
annotated property: definition
annotated target: A nervous system disease that affects either the spinal cord (myelopathy) or brain (encephalopathy) of the central nervous system.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Central_nervous_system_disease

carotid artery disease
type: Class
subclass of: artery disease
subclass of: cerebrovascular disease
数据库_交叉_引用: MESH:D002340
数据库_交叉_引用: NCI:C84476
数据库_交叉_引用: UMLS_CUI:C0007273
has_exact_synonym: disorder of carotid artery
有_obo_命名空间: disease_ontology
id: DOID:3407
in_subset: NCIthesaurus

uterine disease
type: Class
subclass of: female reproductive system disease
definition: A female reproductive system disease that is located_in the uterus.
数据库_交叉_引用: ICD10CM:N85.9
数据库_交叉_引用: ICD9CM:621.9
数据库_交叉_引用: MESH:D014591
数据库_交叉_引用: NCI:C26907
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:12337004
数据库_交叉_引用: UMLS_CUI:C0042131
有_obo_命名空间: disease_ontology
id: DOID:345
in_subset: NCIthesaurus

Axiom
annotated source: uterine disease
annotated property: definition
annotated target: A female reproductive system disease that is located_in the uterus.
Resource Type: ECO_0007643
数据库_交叉_引用: url:http://www.merriam-webster.com/dictionary/uterus

iris cancer
type: Class
subclass of: iris disease
subclass of: uveal cancer
has_alternative_id: DOID:6353
数据库_交叉_引用: MESH:D015811
数据库_交叉_引用: NCI2004_11_17:C3142
数据库_交叉_引用: NCI2004_11_17:C4554
数据库_交叉_引用: NCI:C3142
数据库_交叉_引用: NCI:C4554
数据库_交叉_引用: UMLS_CUI:C0022079
数据库_交叉_引用: UMLS_CUI:C0346372
has_exact_synonym: malignant neoplasm of the Iris
has_exact_synonym: malignant tumor of iris
has_exact_synonym: tumor of the Iris
有_obo_命名空间: disease_ontology
id: DOID:3478
in_subset: NCIthesaurus

uveal cancer
type: Class
subclass of: ocular cancer
subclass of: uveal disease
has_alternative_id: DOID:12754
数据库_交叉_引用: MESH:D014604
数据库_交叉_引用: NCI2004_11_17:C3436
数据库_交叉_引用: NCI2004_11_17:C6105
数据库_交叉_引用: NCI:C3436
数据库_交叉_引用: NCI:C6105
数据库_交叉_引用: UMLS_CUI:C0042162
数据库_交叉_引用: UMLS_CUI:C1334629
has_exact_synonym: Uveal tumor
has_exact_synonym: malignant Uveal tumor
has_exact_synonym: malignant uvea neoplasm
有_obo_命名空间: disease_ontology
id: DOID:3479
in_subset: NCIthesaurus

uveal disease
type: Class
subclass of: eye disease
definition: An eye disease affecting the uvea, which are the pigmented layers of the eye consisting of the iris, ciliary body, and choroid.
数据库_交叉_引用: GARD:8192
数据库_交叉_引用: MESH:D014603
数据库_交叉_引用: NCI:C26908
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:95678007
数据库_交叉_引用: UMLS_CUI:C0042161
有_obo_命名空间: disease_ontology
id: DOID:3480
in_subset: NCIthesaurus

Axiom
annotated source: uveal disease
annotated property: definition
annotated target: An eye disease affecting the uvea, which are the pigmented layers of the eye consisting of the iris, ciliary body, and choroid.
Resource Type: ECO_0007636
数据库_交叉_引用: url:https://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&ns=ncit&code=C26908

cellulitis
type: Class
subclass of: skin disease
subclass of: connective tissue disease
definition: A skin disease where there is a diffuse infection of connective tissue with severe inflammation of dermal and subcutaneous layers of the skin. Cellulitis can be caused by normal skin flora or by exogenous bacteria, and often occurs where the skin has previously been broken: cracks in the skin, cuts, blisters, burns, insect bites, surgical wounds, or sites of intravenous catheter insertion.
has_alternative_id: DOID:2472
数据库_交叉_引用: ICD10CM:L03.90
数据库_交叉_引用: MESH:D002481
数据库_交叉_引用: NCI:C26715
数据库_交叉_引用: NCI:C34454
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:62837005
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:74276003
数据库_交叉_引用: UMLS_CUI:C0007642
数据库_交叉_引用: UMLS_CUI:C0007646
有_obo_命名空间: disease_ontology
id: DOID:3488
in_subset: NCIthesaurus

Axiom
annotated source: cellulitis
annotated property: definition
annotated target: A skin disease where there is a diffuse infection of connective tissue with severe inflammation of dermal and subcutaneous layers of the skin. Cellulitis can be caused by normal skin flora or by exogenous bacteria, and often occurs where the skin has previously been broken: cracks in the skin, cuts, blisters, burns, insect bites, surgical wounds, or sites of intravenous catheter insertion.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Cellulitis

central nervous system cancer
type: Class
subclass of: nervous system cancer
subclass of: central nervous system disease
definition: A nervous system cancer that is located_in the central nervous system.
has_alternative_id: DOID:0060093
has_alternative_id: DOID:1318
数据库_交叉_引用: CSP2005:2012-5421
数据库_交叉_引用: EFO:0000326
数据库_交叉_引用: ICD10CM:C72.9
数据库_交叉_引用: MESH:D016543
数据库_交叉_引用: NCI2004_11_17:C4627
数据库_交叉_引用: NCI2004_11_17:C9293
数据库_交叉_引用: NCI:C4627
数据库_交叉_引用: NCI:C9293
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:93744007
数据库_交叉_引用: UMLS_CUI:C0085136
数据库_交叉_引用: UMLS_CUI:C0348374
has_exact_synonym: CNS neoplasm
has_exact_synonym: central nervous system tumor
has_exact_synonym: central nervous system tumors
has_exact_synonym: malignant neoplasm of central nervous system
has_exact_synonym: malignant tumor of CNS
has_exact_synonym: neoplasm of central nervous system
有_obo_命名空间: disease_ontology
id: DOID:3620
in_subset: NCIthesaurus

Axiom
annotated source: central nervous system cancer
annotated property: definition
annotated target: A nervous system cancer that is located_in the central nervous system.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Central_nervous_system

uterine cancer
type: Class
subclass of: female reproductive organ cancer
subclass of: uterine disease
definition: A female reproductive organ cancer that is located_in the uterus.
has_alternative_id: DOID:4363
数据库_交叉_引用: CSP2005:2016-1566
数据库_交叉_引用: ICD10CM:C55
数据库_交叉_引用: ICD9CM:179
数据库_交叉_引用: MESH:D014594
数据库_交叉_引用: NCI2004_11_17:C3435
数据库_交叉_引用: NCI2004_11_17:C3552
数据库_交叉_引用: NCI:C3435
数据库_交叉_引用: NCI:C3552
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:93718007
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:94127009
数据库_交叉_引用: UMLS_CUI:C0042138
数据库_交叉_引用: UMLS_CUI:C0153567
has_exact_synonym: CA - cancer of uterus
has_exact_synonym: Tumour of uterus
has_exact_synonym: malignant neoplasm of uterus
has_exact_synonym: malignant uterine tumor
has_exact_synonym: neoplasm of uterus
has_exact_synonym: uterine tumor
has_exact_synonym: uterus neoplasm
有_obo_命名空间: disease_ontology
id: DOID:363
in_subset: NCIthesaurus
in_subset: TopNodes DOcancerslim

Axiom
annotated source: uterine cancer
annotated property: definition
annotated target: A female reproductive organ cancer that is located_in the uterus.
Resource Type: ECO_0007637
Resource Type: ECO_0007641
数据库_交叉_引用: url:http://www.cancer.gov/dictionary?CdrID=445094

bladder disease
type: Class
subclass of: urinary system disease
definition: A urinary system disease that is located_in the bladder.
数据库_交叉_引用: ICD10CM:N32.9
数据库_交叉_引用: ICD9CM:596.9
数据库_交叉_引用: MESH:D001745
数据库_交叉_引用: NCI:C2900
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:42643001
数据库_交叉_引用: UMLS_CUI:C0005686
has_exact_synonym: Urinary Bladder Disease
有_obo_命名空间: disease_ontology
id: DOID:365
in_subset: NCIthesaurus

Axiom
annotated source: bladder disease
annotated property: definition
annotated target: A urinary system disease that is located_in the bladder.
Resource Type: ECO_0007644
数据库_交叉_引用: url:http://www.nlm.nih.gov/medlineplus/bladderdiseases.html

skin disease
type: Class
subclass of: integumentary system disease
definition: An integumentary system disease that is located_in skin.
has_alternative_id: DOID:1576
has_alternative_id: DOID:1698
has_alternative_id: DOID:187
has_alternative_id: DOID:6486
has_alternative_id: DOID:8948
数据库_交叉_引用: ICD9CM:702
数据库_交叉_引用: MESH:D012871
数据库_交叉_引用: MESH:D012873
数据库_交叉_引用: NCI:C27554
数据库_交叉_引用: NCI:C3371
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:5613003
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:80659006
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:95320005
数据库_交叉_引用: UMLS_CUI:C0029574
数据库_交叉_引用: UMLS_CUI:C0037274
数据库_交叉_引用: UMLS_CUI:C0037277
has_exact_synonym: Genodermatosis
has_exact_synonym: skin and subcutaneous tissue disease
有_obo_命名空间: disease_ontology
id: DOID:37
in_subset: NCIthesaurus

Axiom
annotated source: skin disease
annotated property: definition
annotated target: An integumentary system disease that is located_in skin.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Skin_disease

cervical adenocarcinoma
type: Class
subclass of: cervix carcinoma
subclass of: adenocarcinoma
definition: A cervix carcinoma that derives_from epithelial cells of glandular origin.
数据库_交叉_引用: NCI2004_11_17:C4029
数据库_交叉_引用: NCI:C4029
数据库_交叉_引用: UMLS_CUI:C0279672
has_exact_synonym: adenocarcinoma cervix uteri
has_exact_synonym: adenocarcinoma of cervix
has_exact_synonym: adenocarcinoma of the uterine Cervix
有_obo_命名空间: disease_ontology
id: DOID:3702
in_subset: NCIthesaurus
label: 子宫颈腺癌 @zh

Axiom
annotated source: cervical adenocarcinoma
annotated property: definition
annotated target: A cervix carcinoma that derives_from epithelial cells of glandular origin.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Adenocarcinoma

gastric adenocarcinoma
type: Class
subclass of: adenocarcinoma
subclass of: stomach carcinoma
definition: A stomach carcinoma that derives_from epithelial cells of glandular origin.
数据库_交叉_引用: NCI2004_11_17:C4004
数据库_交叉_引用: NCI:C4004
数据库_交叉_引用: UMLS_CUI:C0278701
has_exact_synonym: adenocarcinoma of stomach
has_exact_synonym: stomach adenocarcinoma
有_obo_命名空间: disease_ontology
id: DOID:3717
in_subset: DO cancer slim
in_subset: NCIthesaurus
label: 胃腺癌 @zh

Axiom
annotated source: gastric adenocarcinoma
annotated property: definition
annotated target: A stomach carcinoma that derives_from epithelial cells of glandular origin.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Adenocarcinoma

lung carcinoma
type: Class
subclass of: lung cancer
subclass of: carcinoma
definition: A lung cancer that has_material_basis_in abnormally proliferating cells derives_from epithelial cells and is located_in the lungs and has_symptom cough and has_symptom chest discomfort or pain and has_symptom weight loss and has_symptom hemoptysis.
数据库_交叉_引用: EFO:0001071
数据库_交叉_引用: ICD10CM:C34.90
数据库_交叉_引用: NCI2004_11_17:C4878
数据库_交叉_引用: NCI:C4878
数据库_交叉_引用: UMLS_CUI:C0684249
has_exact_synonym: cancer of lung
有_obo_命名空间: disease_ontology
has_related_synonym: carcinoma of lung
id: DOID:3905
in_subset: DO cancer slim
in_subset: NCIthesaurus
comment: OMIM mapping confirmed by DO. [SN].

Axiom
annotated source: lung carcinoma
annotated property: definition
annotated target: A lung cancer that has_material_basis_in abnormally proliferating cells derives_from epithelial cells and is located_in the lungs and has_symptom cough and has_symptom chest discomfort or pain and has_symptom weight loss and has_symptom hemoptysis.
Resource Type: ECO_0007637
数据库_交叉_引用: url:https://merck.com/mmpe/sec05/ch062/ch062b.html

lung non-small cell carcinoma
type: Class
subclass of: lung carcinoma
definition: A lung carcinoma that is characterized as any type of epithelial lung cancer other than small cell lung carcinoma.
数据库_交叉_引用: EFO:0003060
数据库_交叉_引用: KEGG:05223
数据库_交叉_引用: MESH:D002289
数据库_交叉_引用: NCI:C2926
数据库_交叉_引用: UMLS_CUI:C0007131
has_exact_synonym: NSCLC
has_exact_synonym: Non-small cell lung cancer
has_exact_synonym: non-small cell lung carcinoma
有_obo_命名空间: disease_ontology
id: DOID:3908
in_subset: DO cancer slim
in_subset: NCIthesaurus
label: non-small cell lung carcinoma
label: 非小细胞肺癌 @zh

Axiom
annotated source: lung non-small cell carcinoma
annotated property: definition
annotated target: A lung carcinoma that is characterized as any type of epithelial lung cancer other than small cell lung carcinoma.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Non-small-cell_lung_carcinoma

urinary system cancer
type: Class
subclass of: organ system cancer
subclass of: urinary system disease
definition: An organ system cancer that is located_in the kidneys, ureteres, bladder or urethra.
数据库_交叉_引用: ICD10CM:C68.9
数据库_交叉_引用: ICD9CM:189.9
数据库_交叉_引用: UMLS_CUI:C0348371
有_obo_命名空间: disease_ontology
id: DOID:3996

Axiom
annotated source: urinary system cancer
annotated property: definition
annotated target: An organ system cancer that is located_in the kidneys, ureteres, bladder or urethra.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Urinary_system

disease
type: Class
subclass of: disposition
definition: A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.
数据库_交叉_引用: MESH:D004194
数据库_交叉_引用: NCI:C2991
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:64572001
数据库_交叉_引用: UMLS_CUI:C0012634
有_obo_命名空间: disease_ontology
id: DOID:4
in_subset: NCIthesaurus

Axiom
annotated source: disease
annotated property: definition
annotated target: A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.
数据库_交叉_引用: url:http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf

mouth disease
type: Class
subclass of: gastrointestinal system disease
definition: A gastrointestinal system disease that is located_in the mouth.
数据库_交叉_引用: MESH:D009059
数据库_交叉_引用: NCI:C27641
数据库_交叉_引用: NCI:C3240
数据库_交叉_引用: UMLS_CUI:C0026636
有_obo_命名空间: disease_ontology
id: DOID:403
in_subset: NCIthesaurus

Axiom
annotated source: mouth disease
annotated property: definition
annotated target: A gastrointestinal system disease that is located_in the mouth.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Oral_and_maxillofacial_pathology

skeletal muscle cancer
type: Class
subclass of: muscle cancer
数据库_交叉_引用: NCI2004_11_17:C6516
数据库_交叉_引用: NCI:C6516
数据库_交叉_引用: UMLS_CUI:C1334619
has_exact_synonym: malignant tumor of Skeletal Muscle
有_obo_命名空间: disease_ontology
id: DOID:4043
in_subset: NCIthesaurus

muscle cancer
type: Class
subclass of: musculoskeletal system cancer
subclass of: muscular disease
definition: A musculoskeletal system cancer that is located_in muscle.
has_alternative_id: DOID:4046
数据库_交叉_引用: ICD10CM:C49
数据库_交叉_引用: MESH:D009217
数据库_交叉_引用: MESH:D019042
数据库_交叉_引用: NCI2004_11_17:C4883
数据库_交叉_引用: NCI:C4883
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:20667008
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:93913006
数据库_交叉_引用: UMLS_CUI:C0027095
数据库_交叉_引用: UMLS_CUI:C0684743
has_exact_synonym: malignant neoplasm of muscle
has_exact_synonym: malignant tumor of muscle
has_exact_synonym: malignant tumor of the Muscle
has_exact_synonym: myosarcoma
有_obo_命名空间: disease_ontology
id: DOID:4045
in_subset: NCIthesaurus
in_subset: TopNodes DOcancerslim

Axiom
annotated source: muscle cancer
annotated property: definition
annotated target: A musculoskeletal system cancer that is located_in muscle.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Muscle

skin cancer
type: Class
subclass of: integumentary system cancer
subclass of: skin disease
definition: An integumentary system cancer located_in the skin that is the uncontrolled growth of abnormal skin cells.
数据库_交叉_引用: GARD:10421
数据库_交叉_引用: MESH:D012878
数据库_交叉_引用: MTH:NOCODE
数据库_交叉_引用: NCI2004_11_17:C2920
数据库_交叉_引用: NCI:C2920
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:94047004
数据库_交叉_引用: UMLS_CUI:C0007114
has_exact_synonym: CA - skin cancer
has_exact_synonym: malignant neoplasm of skin
has_exact_synonym: melanoma and Non-melanoma skin cancer
有_obo_命名空间: disease_ontology
has_related_synonym: cancer of skin
id: DOID:4159
in_subset: NCIthesaurus
in_subset: TopNodes DOcancerslim

Axiom
annotated source: skin cancer
annotated property: definition
annotated target: An integumentary system cancer located_in the skin that is the uncontrolled growth of abnormal skin cells.
Resource Type: ECO_0007645
数据库_交叉_引用: url:http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0002414/

brain stem cancer
type: Class
subclass of: infratentorial cancer
has_alternative_id: DOID:13974
has_alternative_id: DOID:4204
has_alternative_id: DOID:4208
数据库_交叉_引用: GARD:8244
数据库_交叉_引用: ICD10CM:C71.7
数据库_交叉_引用: ICD9CM:191.7
数据库_交叉_引用: MESH:D020295
数据库_交叉_引用: NCI:C3570
数据库_交叉_引用: NCI:C4869
数据库_交叉_引用: NCI:C4975
数据库_交叉_引用: NCI:C5967
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:93726004
数据库_交叉_引用: UMLS_CUI:C0153641
数据库_交叉_引用: UMLS_CUI:C0677866
数据库_交叉_引用: UMLS_CUI:C0751886
数据库_交叉_引用: UMLS_CUI:C1332192
has_exact_synonym: malignant neoplasm of brain stem
has_exact_synonym: malignant neoplasm of brainstem
has_exact_synonym: neoplasm of adult brain stem
has_exact_synonym: neoplasm of brain stem
has_exact_synonym: primary brain Stem tumor
has_exact_synonym: primary brain stem neoplasm
有_obo_命名空间: disease_ontology
id: DOID:4203
in_subset: NCIthesaurus

smooth muscle cancer
type: Class
subclass of: muscle cancer
数据库_交叉_引用: NCI2004_11_17:C6511
数据库_交叉_引用: NCI:C6511
数据库_交叉_引用: UMLS_CUI:C1334620
has_exact_synonym: malignant tumor of Smooth Muscle
有_obo_命名空间: disease_ontology
id: DOID:4230
in_subset: NCIthesaurus

ciliary body cancer
type: Class
subclass of: iris cancer
subclass of: ciliary body disease
has_alternative_id: DOID:6352
数据库_交叉_引用: ICD10CM:C69.4
数据库_交叉_引用: NCI2004_11_17:C4364
数据库_交叉_引用: NCI2004_11_17:C4766
数据库_交叉_引用: NCI:C4364
数据库_交叉_引用: NCI:C4766
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:93756008
数据库_交叉_引用: UMLS_CUI:C0339349
数据库_交叉_引用: UMLS_CUI:C0496833
has_exact_synonym: malignant neoplasm of ciliary body
has_exact_synonym: malignant tumor of ciliary body
has_exact_synonym: malignant tumor of the Ciliary body
has_exact_synonym: neoplasm of ciliary body
has_exact_synonym: tumor of the Ciliary body
有_obo_命名空间: disease_ontology
id: DOID:4352
in_subset: NCIthesaurus

ciliary body disease
type: Class
subclass of: iris disease
数据库_交叉_引用: NCI:C35775
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:68575007
数据库_交叉_引用: UMLS_CUI:C0271100
有_obo_命名空间: disease_ontology
id: DOID:4353
in_subset: NCIthesaurus

cervical cancer
type: Class
subclass of: cervix disease
subclass of: uterine cancer
definition: A female reproductive organ cancer that is located_in the cervix.
has_alternative_id: DOID:4361
数据库_交叉_引用: CSP2005:2016-1746
数据库_交叉_引用: ICD10CM:C53
数据库_交叉_引用: ICD10CM:C53.9
数据库_交叉_引用: ICD9CM:180
数据库_交叉_引用: ICD9CM:180.9
数据库_交叉_引用: MESH:D002583
数据库_交叉_引用: NCI2004_11_17:C2940
数据库_交叉_引用: NCI:C2940
数据库_交叉_引用: NCI:C9311
数据库_交叉_引用: OMIM:603956
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:93752005
数据库_交叉_引用: UMLS_CUI:C0007847
数据库_交叉_引用: UMLS_CUI:C0007873
has_exact_synonym: cervical neoplasm
has_exact_synonym: cervix cancer
has_exact_synonym: cervix uteri cancer
has_exact_synonym: neoplasm of uterine cervix
has_exact_synonym: tumor of the Cervix Uteri
has_exact_synonym: uterine cervical neoplasm
有_obo_命名空间: disease_ontology
id: DOID:4362
in_subset: DO cancer slim
in_subset: NCIthesaurus
in_subset: TopNodes DOcancerslim

Axiom
annotated source: cervical cancer
annotated property: definition
annotated target: A female reproductive organ cancer that is located_in the cervix.
Resource Type: ECO_0007637
Resource Type: ECO_0007638
Resource Type: ECO_0007641
数据库_交叉_引用: url:http://cancergenome.nih.gov/cancersselected/cervicalcancer
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Cervical_cancer
数据库_交叉_引用: url:http://www.cancer.gov/dictionary?CdrID=444973

retinal cancer
type: Class
subclass of: ocular cancer
subclass of: retinal disease
has_alternative_id: DOID:770
数据库_交叉_引用: ICD10CM:C69.2
数据库_交叉_引用: ICD9CM:190.5
数据库_交叉_引用: MESH:D019572
数据库_交叉_引用: NCI2004_11_17:C3216
数据库_交叉_引用: NCI2004_11_17:C4800
数据库_交叉_引用: NCI:C3216
数据库_交叉_引用: NCI:C4800
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:93987004
数据库_交叉_引用: UMLS_CUI:C0024622
数据库_交叉_引用: UMLS_CUI:C0524801
has_exact_synonym: Retinal tumor
has_exact_synonym: malignant Retinal neoplasm
has_exact_synonym: malignant neoplasm of retina
has_exact_synonym: malignant tumor of retina
has_exact_synonym: neoplasm of retina
有_obo_命名空间: disease_ontology
id: DOID:4645
in_subset: NCIthesaurus

infratentorial cancer
type: Class
subclass of: brain cancer
definition: A brain cancer that is located_in the infratentorial region.
has_alternative_id: DOID:4789
数据库_交叉_引用: ICD10CM:C71.7
数据库_交叉_引用: MESH:D015192
数据库_交叉_引用: NCI2004_11_17:C3139
数据库_交叉_引用: NCI2004_11_17:C4966
数据库_交叉_引用: NCI:C3139
数据库_交叉_引用: NCI:C4966
数据库_交叉_引用: UMLS_CUI:C0021432
数据库_交叉_引用: UMLS_CUI:C0751593
has_exact_synonym: brain neoplasm, Infratentorial
has_exact_synonym: malignant Infratentorial tumors
有_obo_命名空间: disease_ontology
id: DOID:4706
in_subset: NCIthesaurus

Axiom
annotated source: infratentorial cancer
annotated property: definition
annotated target: A brain cancer that is located_in the infratentorial region.
Resource Type: ECO_0007636
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Tentorium_cerebelli
数据库_交叉_引用: url:http://www.ncbi.nlm.nih.gov/mesh/68015192

renal pelvis carcinoma
type: Class
subclass of: kidney cancer
subclass of: carcinoma
has_alternative_id: DOID:12343
数据库_交叉_引用: ICD10CM:C65
数据库_交叉_引用: ICD9CM:189.1
数据库_交叉_引用: NCI2004_11_17:C6142
数据库_交叉_引用: NCI2004_11_17:C7525
数据库_交叉_引用: NCI:C6142
数据库_交叉_引用: NCI:C7525
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:93985007
数据库_交叉_引用: UMLS_CUI:C0153618
数据库_交叉_引用: UMLS_CUI:C1335749
has_exact_synonym: carcinoma of kidney Pelvis
has_exact_synonym: malignant neoplasm of renal pelvis
has_exact_synonym: malignant renal Pelvis neoplasm
has_exact_synonym: malignant tumor of renal pelvis
has_exact_synonym: renal pelvis cancer
有_obo_命名空间: disease_ontology
id: DOID:4919
in_subset: NCIthesaurus

thoracic cancer
type: Class
subclass of: organ system cancer
subclass of: thoracic disease
definition: An organ system cancer located_in the thoracic cavity that develops in the different types of cells within the lungs, as well as less common cancers of the esophagus, the trachea, or the chest wall.
has_alternative_id: DOID:3937
数据库_交叉_引用: CSP2005:2005-5041
数据库_交叉_引用: ICD10CM:C76.1
数据库_交叉_引用: ICD9CM:195.1
数据库_交叉_引用: MESH:D013899
数据库_交叉_引用: NCI2004_11_17:C3406
数据库_交叉_引用: NCI:C3406
数据库_交叉_引用: NCI:C3576
数据库_交叉_引用: UMLS_CUI:C0039981
数据库_交叉_引用: UMLS_CUI:C0153661
has_exact_synonym: Thoracic tumor
has_exact_synonym: thorax cancer
has_exact_synonym: thorax neoplasm
has_exact_synonym: tumor of thorax
有_obo_命名空间: disease_ontology
id: DOID:5093
in_subset: NCIthesaurus

Axiom
annotated source: thoracic cancer
annotated property: definition
annotated target: An organ system cancer located_in the thoracic cavity that develops in the different types of cells within the lungs, as well as less common cancers of the esophagus, the trachea, or the chest wall.
数据库_交叉_引用: url:http://www.advocatehealth.com/cmc/body.cfm?id=203

aortic disease
type: Class
subclass of: artery disease
definition: An artery disease that is characterized by degeneration of the cells composing the aortic wall.
数据库_交叉_引用: CSP2005:0571-0627
数据库_交叉_引用: MESH:D001018
数据库_交叉_引用: NCI:C101253
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:47040006
数据库_交叉_引用: UMLS_CUI:C0003493
has_exact_synonym: aortic disorder
has_exact_synonym: disorder of the aorta
有_obo_命名空间: disease_ontology
id: DOID:520
in_subset: NCIthesaurus

Axiom
annotated source: aortic disease
annotated property: definition
annotated target: An artery disease that is characterized by degeneration of the cells composing the aortic wall.
数据库_交叉_引用: url:http://www.hopkinsmedicine.org/heart_vascular_institute/conditions_treatments/conditions/aorta.html

malignant dermis tumor
type: Class
subclass of: skin cancer
数据库_交叉_引用: NCI2004_11_17:C4574
数据库_交叉_引用: NCI:C4574
数据库_交叉_引用: UMLS_CUI:C0346811
has_exact_synonym: malignant neoplasm of Dermis
has_exact_synonym: malignant tumor of dermis
有_obo_命名空间: disease_ontology
id: DOID:5274
in_subset: NCIthesaurus

intestinal disease
type: Class
subclass of: gastrointestinal system disease
definition: A gastrointestinal system disease that is located_in the intestine.
has_alternative_id: DOID:10759
has_alternative_id: DOID:11222
has_alternative_id: DOID:11789
has_alternative_id: DOID:8531
has_alternative_id: DOID:8558
has_alternative_id: DOID:8591
数据库_交叉_引用: ICD10CM:K63.9
数据库_交叉_引用: ICD9CM:569.9
数据库_交叉_引用: MESH:D007410
数据库_交叉_引用: NCI:C26801
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:85919009
数据库_交叉_引用: UMLS_CUI:C0021831
有_obo_命名空间: disease_ontology
id: DOID:5295
in_subset: NCIthesaurus

Axiom
annotated source: intestinal disease
annotated property: definition
annotated target: A gastrointestinal system disease that is located_in the intestine.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Human_gastrointestinal_tract

colonic disease
type: Class
subclass of: intestinal disease
has_alternative_id: DOID:10758
数据库_交叉_引用: CSP2005:1248-3971
数据库_交叉_引用: MESH:D003108
数据库_交叉_引用: UMLS_CUI:C0009373
has_exact_synonym: colon disorder
有_obo_命名空间: disease_ontology
id: DOID:5353

stomach carcinoma
type: Class
subclass of: stomach cancer
subclass of: carcinoma
definition: A stomach cancer that is located_in the stomach.
数据库_交叉_引用: EFO:0000178
数据库_交叉_引用: NCI2004_11_17:C4911
数据库_交叉_引用: NCI:C4911
数据库_交叉_引用: UMLS_CUI:C0699791
has_exact_synonym: cancer of the stomach
has_exact_synonym: carcinoma of stomach
has_exact_synonym: gastric carcinoma
有_obo_命名空间: disease_ontology
id: DOID:5517
in_subset: NCIthesaurus

Axiom
annotated source: stomach carcinoma
annotated property: definition
annotated target: A stomach cancer that is located_in the stomach.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Stomach_cancer

kidney disease
type: Class
subclass of: urinary system disease
definition: A urinary system disease that is located_in the kidney.
数据库_交叉_引用: EFO:0003086
数据库_交叉_引用: ICD10CM:N08
数据库_交叉_引用: ICD10CM:N28.9
数据库_交叉_引用: MESH:D007674
数据库_交叉_引用: NCI:C3149
数据库_交叉_引用: NCI:C34843
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:90708001
数据库_交叉_引用: UMLS_CUI:C0022658
has_exact_synonym: nephropathy
有_obo_命名空间: disease_ontology
id: DOID:557
in_subset: DO FlyBase slim
in_subset: NCIthesaurus

Axiom
annotated source: kidney disease
annotated property: definition
annotated target: A urinary system disease that is located_in the kidney.
Resource Type: ECO_0007644
数据库_交叉_引用: url:http://www.nlm.nih.gov/medlineplus/kidneydiseases.html

spinal cancer
type: Class
subclass of: spinal cord disease
subclass of: central nervous system cancer
definition: A central nervous system cancer that is located_in the spinal cord. It is mostly formed from metastases from primary cancers elsewhere (commonly breast, prostate, and lung cancer).
has_alternative_id: DOID:3638
has_alternative_id: DOID:7225
数据库_交叉_引用: ICD10CM:C72.0
数据库_交叉_引用: ICD9CM:192.2
数据库_交叉_引用: MESH:D013120
数据库_交叉_引用: MESH:D013125
数据库_交叉_引用: NCI2004_11_17:C3381
数据库_交叉_引用: NCI2004_11_17:C3382
数据库_交叉_引用: NCI2004_11_17:C3572
数据库_交叉_引用: NCI:C3381
数据库_交叉_引用: NCI:C3572
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:94068003
数据库_交叉_引用: UMLS_CUI:C0037930
数据库_交叉_引用: UMLS_CUI:C0037939
数据库_交叉_引用: UMLS_CUI:C0153646
has_exact_synonym: Intraspinal tumor
has_exact_synonym: malignant tumor of the Spinal Cord
has_exact_synonym: spinal cord cancer
has_exact_synonym: spinal cord neoplasm
has_exact_synonym: tumor of the Spinal Cord
有_obo_命名空间: disease_ontology
has_related_synonym: spinal neoplasm
id: DOID:5612
in_subset: NCIthesaurus
in_subset: TopNodes DOcancerslim

Axiom
annotated source: spinal cancer
annotated property: definition
annotated target: A central nervous system cancer that is located_in the spinal cord. It is mostly formed from metastases from primary cancers elsewhere (commonly breast, prostate, and lung cancer).
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Spinal_tumor

eye disease
type: Class
subclass of: eye and adnexa disease
definition: An eye and adnexa disease that is located_in the eye.
has_alternative_id: DOID:2933
数据库_交叉_引用: ICD10CM:H44
数据库_交叉_引用: ICD10CM:H44.9
数据库_交叉_引用: ICD9CM:360
数据库_交叉_引用: ICD9CM:360.9
数据库_交叉_引用: ICD9CM:379.90
数据库_交叉_引用: MESH:D005128
数据库_交叉_引用: NCI:C26767
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:79517001
数据库_交叉_引用: UMLS_CUI:C0015397
有_obo_命名空间: disease_ontology
id: DOID:5614
in_subset: DO FlyBase slim
in_subset: NCIthesaurus

Axiom
annotated source: eye disease
annotated property: definition
annotated target: An eye and adnexa disease that is located_in the eye.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Eye_disease

large intestine cancer
type: Class
subclass of: intestinal cancer
definition: An intestinal cancer that effects the long, tube-like organ that is connected to the small intestine at one end and the anus at the other.
has_alternative_id: DOID:1994
has_alternative_id: DOID:1997
数据库_交叉_引用: ICD10CM:C18.9
数据库_交叉_引用: MESH:D015179
数据库_交叉_引用: NCI:C2955
数据库_交叉_引用: NCI:C4978
数据库_交叉_引用: NCI:C5105
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:93854002
数据库_交叉_引用: UMLS_CUI:C0009402
数据库_交叉_引用: UMLS_CUI:C0346629
数据库_交叉_引用: UMLS_CUI:C1319315
有_obo_命名空间: disease_ontology
id: DOID:5672
in_subset: NCIthesaurus
in_subset: TopNodes DOcancerslim

Axiom
annotated source: large intestine cancer
annotated property: definition
annotated target: An intestinal cancer that effects the long, tube-like organ that is connected to the small intestine at one end and the anus at the other.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Large_intestine

retinal disease
type: Class
subclass of: eye disease
definition: An eye disease that is located_in the retina.
数据库_交叉_引用: ICD10CM:H35.9
数据库_交叉_引用: ICD9CM:362.9
数据库_交叉_引用: MESH:D012164
数据库_交叉_引用: NCI:C26875
数据库_交叉_引用: NCI:C62601
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:29555009
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:35426003
数据库_交叉_引用: UMLS_CUI:C0035309
有_obo_命名空间: disease_ontology
id: DOID:5679
in_subset: NCIthesaurus

Axiom
annotated source: retinal disease
annotated property: definition
annotated target: An eye disease that is located_in the retina.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Retina#Diseases_and_disorders

peripheral nervous system disease
type: Class
subclass of: nervous system disease
definition: A nervous system disease that affects the peripheral nervous system.
has_alternative_id: DOID:13069
数据库_交叉_引用: CSP2005:2042-6617
数据库_交叉_引用: ICD10CM:G64
数据库_交叉_引用: ICD9CM:350-359.99
数据库_交叉_引用: MESH:D010523
数据库_交叉_引用: MTH:516
数据库_交叉_引用: NCI:C119734
数据库_交叉_引用: NCI:C27580
数据库_交叉_引用: NCI:C27587
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:42658009
数据库_交叉_引用: UMLS_CUI:C0031117
数据库_交叉_引用: UMLS_CUI:C1335029
有_obo_命名空间: disease_ontology
has_related_synonym: peripheral nerve disease
has_related_synonym: peripheral neuropathy
id: DOID:574
in_subset: DO AGR slim
in_subset: DO GXD slim
in_subset: NCIthesaurus

Axiom
annotated source: peripheral nervous system disease
annotated property: definition
annotated target: A nervous system disease that affects the peripheral nervous system.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/w/index.php?title=Peripheral_neuropathy&redirect=no

Axiom
annotated source: peripheral nervous system disease
annotated property: has_related_synonym
annotated target: peripheral nerve disease
数据库_交叉_引用: MTH:516

central nervous system hematologic cancer
type: Class
subclass of: hematologic cancer
subclass of: central nervous system cancer
definition: A hematologic cancer and central nervous system neoplasm that is located_in the central nervous system.
数据库_交叉_引用: NCI2004_11_17:C5503
数据库_交叉_引用: NCI:C5503
数据库_交叉_引用: UMLS_CUI:C1332882
has_exact_synonym: CNS hematopoietic tumor
有_obo_命名空间: disease_ontology
has_related_synonym: hematopoietic neoplasm of central nervous system
id: DOID:5772
in_subset: NCIthesaurus

Axiom
annotated source: central nervous system hematologic cancer
annotated property: definition
annotated target: A hematologic cancer and central nervous system neoplasm that is located_in the central nervous system.
数据库_交叉_引用: url:http://www.oncologystat.com/journals/ew/YSONC/Central_Nervous_System_Disease_in_Hematologic_Malignancies_Historical_Perspective_and_Practical_Applications.html

endocardium cancer
type: Class
subclass of: endocardium disease
subclass of: heart cancer
has_alternative_id: DOID:14538
数据库_交叉_引用: NCI2004_11_17:C4570
数据库_交叉_引用: NCI:C4570
数据库_交叉_引用: NCI:C5346
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:93778001
数据库_交叉_引用: UMLS_CUI:C0346612
数据库_交叉_引用: UMLS_CUI:C1290401
has_exact_synonym: malignant Endocardial tumor
has_exact_synonym: malignant neoplasm of endocardium
has_exact_synonym: malignant tumor of endocardium
有_obo_命名空间: disease_ontology
id: DOID:5877
in_subset: NCIthesaurus

pulmonary artery disease
type: Class
subclass of: artery disease
subclass of: lung disease
definition: An artery disease that is located in the lungs.
有_obo_命名空间: disease_ontology
id: DOID:60001

Axiom
annotated source: pulmonary artery disease
annotated property: definition
annotated target: An artery disease that is located in the lungs.
Resource Type: ECO_0007645
数据库_交叉_引用: url:https://www.ncbi.nlm.nih.gov/pubmed/23737196

cornea cancer
type: Class
subclass of: corneal disease
subclass of: ocular cancer
has_alternative_id: DOID:12757
数据库_交叉_引用: ICD10CM:C69.1
数据库_交叉_引用: ICD9CM:190.4
数据库_交叉_引用: NCI2004_11_17:C3565
数据库_交叉_引用: NCI2004_11_17:C4361
数据库_交叉_引用: NCI:C3565
数据库_交叉_引用: NCI:C4361
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:93766000
数据库_交叉_引用: UMLS_CUI:C0153629
数据库_交叉_引用: UMLS_CUI:C0339304
has_exact_synonym: Corneal tumor
has_exact_synonym: malignant Corneal tumor
has_exact_synonym: malignant neoplasm of cornea
has_exact_synonym: malignant tumor of cornea
has_exact_synonym: neoplasm of cornea
有_obo_命名空间: disease_ontology
id: DOID:6199
in_subset: NCIthesaurus

connective tissue disease
type: Class
subclass of: musculoskeletal system disease
definition: A musculoskeletal system disease that affects tissues such as skin, tendons, and cartilage.
数据库_交叉_引用: CSP2005:0729-7208
数据库_交叉_引用: MESH:D003240
数据库_交叉_引用: NCI:C26729
数据库_交叉_引用: UMLS_CUI:C0009782
has_exact_synonym: connective tissue disorder
has_exact_synonym: disorder of connective tissue
有_obo_命名空间: disease_ontology
id: DOID:65
in_subset: NCIthesaurus

Axiom
annotated source: connective tissue disease
annotated property: definition
annotated target: A musculoskeletal system disease that affects tissues such as skin, tendons, and cartilage.
Resource Type: ECO_0007637
数据库_交叉_引用: url:http://www.niams.nih.gov/Health_Info/Scleroderma/default.asp

cerebrovascular disease
type: Class
subclass of: vascular disease
subclass of: brain disease
definition: An vascular disease that is characterized by dysfunction of the blood vessels supplying the brain.
has_alternative_id: DOID:12214
has_alternative_id: DOID:3455
has_alternative_id: DOID:8231
数据库_交叉_引用: CSP2005:0617-5539
数据库_交叉_引用: EFO:0000712
数据库_交叉_引用: ICD10CM:I60-I69
数据库_交叉_引用: ICD10CM:I63.9
数据库_交叉_引用: ICD10CM:I67.9
数据库_交叉_引用: ICD9CM:430-438.99
数据库_交叉_引用: ICD9CM:437.9
数据库_交叉_引用: MESH:D002561
数据库_交叉_引用: MESH:D020521
数据库_交叉_引用: NCI:C2938
数据库_交叉_引用: NCI:C3390
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:62914000
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:82797006
数据库_交叉_引用: UMLS_CUI:C0007820
数据库_交叉_引用: UMLS_CUI:C0038454
has_exact_synonym: CVA
has_exact_synonym: Cerebrovascular accident
has_exact_synonym: cerebrovascular accident
has_exact_synonym: cerebrovascular disorder
has_exact_synonym: stroke
有_obo_命名空间: disease_ontology
id: DOID:6713
in_subset: NCIthesaurus
comment: OMIM mapping confirmed by DO. [SN].

Axiom
annotated source: cerebrovascular disease
annotated property: definition
annotated target: An vascular disease that is characterized by dysfunction of the blood vessels supplying the brain.
Resource Type: ECO_0007638
Resource Type: ECO_0007646
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Cerebrovascular_disease
数据库_交叉_引用: url:http://www.ncbi.nlm.nih.gov/books/NBK378/

disease of anatomical entity
type: Class
subclass of: disease
definition: A disease that manifests in a defined anatomical structure.
has_alternative_id: DOID:1
has_alternative_id: DOID:2
has_alternative_id: DOID:5
has_alternative_id: DOID:71
has_alternative_id: DOID:72
has_alternative_id: DOID:8
有_obo_命名空间: disease_ontology
id: DOID:7

Axiom
annotated source: disease of anatomical entity
annotated property: definition
annotated target: A disease that manifests in a defined anatomical structure.
Resource Type: ECO_0007643
数据库_交叉_引用: url:http://www2.merriam-webster.com/cgi-bin/mwmednlm?book=Medical&va=anatomic

urethral disease
type: Class
subclass of: urinary system disease
definition: A urinary system disease that is located_in the urethra.
数据库_交叉_引用: ICD10CM:N36.9
数据库_交叉_引用: MESH:D014522
数据库_交叉_引用: NCI2004_11_17:C26903
数据库_交叉_引用: NCI:C26903
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:4985009
数据库_交叉_引用: UMLS_CUI:C0041969
has_exact_synonym: urethra disease
有_obo_命名空间: disease_ontology
id: DOID:732
in_subset: NCIthesaurus

Axiom
annotated source: urethral disease
annotated property: definition
annotated target: A urinary system disease that is located_in the urethra.
Resource Type: ECO_0007644
数据库_交叉_引用: url:http://www.nlm.nih.gov/medlineplus/urethraldisorders.html

urethra cancer
type: Class
subclass of: urinary system cancer
subclass of: urethral disease
definition: An urinary tract cancer that derives_from the tissues of the urethra.
has_alternative_id: DOID:737
数据库_交叉_引用: GARD:9390
数据库_交叉_引用: ICD10CM:C68.0
数据库_交叉_引用: ICD9CM:189.3
数据库_交叉_引用: MESH:D014523
数据库_交叉_引用: NCI2004_11_17:C7507
数据库_交叉_引用: NCI:C7507
数据库_交叉_引用: NCI:C9106
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:94123008
数据库_交叉_引用: UMLS_CUI:C0153620
数据库_交叉_引用: UMLS_CUI:C0700101
has_exact_synonym: malignant tumour of urethra
has_exact_synonym: malignant urethral neoplasm
has_exact_synonym: urethral Ca
有_obo_命名空间: disease_ontology
has_related_synonym: cancer of urethra
id: DOID:734
in_subset: NCIthesaurus

Axiom
annotated source: urethra cancer
annotated property: definition
annotated target: An urinary tract cancer that derives_from the tissues of the urethra.
Resource Type: ECO_0007637
数据库_交叉_引用: url:http://www.cancer.gov/cancertopics/pdq/treatment/urethral/Patient

hematopoietic system disease
type: Class
subclass of: disease of anatomical entity
definition: A disease of anatomical entity that has_material_basis_in hematopoietic cells.
数据库_交叉_引用: CSP2005:0427-3600
数据库_交叉_引用: ICD10CM:D75.9
数据库_交叉_引用: ICD9CM:280-289.99
数据库_交叉_引用: ICD9CM:289.9
数据库_交叉_引用: ICD9CM_2006:280-289.99
数据库_交叉_引用: MESH:D006402
数据库_交叉_引用: MTH:NOCODE
数据库_交叉_引用: MTHICD9_2006:289.9
数据库_交叉_引用: NCI:C26323
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:34093004
数据库_交叉_引用: UMLS_CUI:C0018939
has_exact_synonym: Blood disease
has_exact_synonym: Blood dyscrasia
has_exact_synonym: DISEASE OF THE BLOOD AND BLOOD-FORMING ORGANS
has_exact_synonym: Hematological disease
has_exact_synonym: blood disorder
has_exact_synonym: disease of hematopoietic system
有_obo_命名空间: disease_ontology
id: DOID:74
in_subset: DO AGR slim
in_subset: DO GXD slim
in_subset: DO MGI slim
in_subset: NCIthesaurus

Axiom
annotated source: hematopoietic system disease
annotated property: definition
annotated target: A disease of anatomical entity that has_material_basis_in hematopoietic cells.
Resource Type: ECO_0007638
Resource Type: ECO_0007646
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Hematopathology
数据库_交叉_引用: url:https://www.ncbi.nlm.nih.gov/books/NBK1741/

stomach disease
type: Class
subclass of: gastrointestinal system disease
definition: A gastrointestinal system disease that is located_in the stomach.
数据库_交叉_引用: MESH:D013272
数据库_交叉_引用: NCI2004_11_17:C26886
数据库_交叉_引用: NCI:C26886
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:29384001
数据库_交叉_引用: UMLS_CUI:C0038354
has_exact_synonym: Gastropathy
has_exact_synonym: stomach disorder
有_obo_命名空间: disease_ontology
has_related_synonym: gastric disease
id: DOID:76
in_subset: NCIthesaurus

Axiom
annotated source: stomach disease
annotated property: definition
annotated target: A gastrointestinal system disease that is located_in the stomach.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Stomach_disease

gastrointestinal system disease
type: Class
subclass of: disease of anatomical entity
definition: A disease of anatomical entity that is located_in the gastrointestinal tract.
has_alternative_id: DOID:27
has_alternative_id: DOID:944
数据库_交叉_引用: CSP2005:1248-3545
数据库_交叉_引用: ICD10CM:K92.9
数据库_交叉_引用: ICD9CM:520-579.99
数据库_交叉_引用: MESH:D004066
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:53619000
数据库_交叉_引用: UMLS_CUI:C0012242
has_exact_synonym: GIT disease
has_exact_synonym: Gastroenteropathy
has_exact_synonym: alimentary system disease
has_exact_synonym: digestive system disorder
has_exact_synonym: gastrointestinal disease
has_exact_synonym: gastrointestinal disorder
有_obo_命名空间: disease_ontology
id: DOID:77
in_subset: DO AGR slim
in_subset: DO GXD slim
in_subset: DO MGI slim

Axiom
annotated source: gastrointestinal system disease
annotated property: definition
annotated target: A disease of anatomical entity that is located_in the gastrointestinal tract.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Human_gastrointestinal_tract

lung disease
type: Class
subclass of: lower respiratory tract disease
definition: A lower respiratory tract disease in which the function of the lungs is adversely affected by narrowing or blockage of the airways resulting in poor air flow, a loss of elasticity in the lungs that produces a decrease in the total volume of air that the lungs are able to hold, and clotting, scarring, or inflammation of the blood vessels that affect the ability of the lungs to take up oxygen and to release carbon dioxide.
has_alternative_id: DOID:11894
has_alternative_id: DOID:11895
has_alternative_id: DOID:29
has_alternative_id: DOID:766
数据库_交叉_引用: ICD10CM:J98.4
数据库_交叉_引用: MESH:D008171
数据库_交叉_引用: NCI:C3198
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:19829001
数据库_交叉_引用: UMLS_CUI:C0024115
有_obo_命名空间: disease_ontology
id: DOID:850
in_subset: NCIthesaurus
comment: Updating out dated CUI and removing lung abscess as a synonym.

Axiom
annotated source: lung disease
annotated property: definition
annotated target: A lower respiratory tract disease in which the function of the lungs is adversely affected by narrowing or blockage of the airways resulting in poor air flow, a loss of elasticity in the lungs that produces a decrease in the total volume of air that the lungs are able to hold, and clotting, scarring, or inflammation of the blood vessels that affect the ability of the lungs to take up oxygen and to release carbon dioxide.
Resource Type: ECO_0007637
Resource Type: ECO_0007640
数据库_交叉_引用: url:http://www.niehs.nih.gov/health/topics/conditions/lung-disease/index.cfm
数据库_交叉_引用: url:http://www.nlm.nih.gov/medlineplus/ency/article/000066.htm

monocytic leukemia
type: Class
subclass of: myeloid leukemia
definition: A myeloid leukemia that is characterized by a dominance of monocytes in the marrow.
has_alternative_id: DOID:8526
has_alternative_id: DOID:8809
has_alternative_id: DOID:8884
has_alternative_id: DOID:8935
has_alternative_id: DOID:9151
数据库_交叉_引用: CSP2005:2004-2820
数据库_交叉_引用: ICD10CM:C93
数据库_交叉_引用: ICD9CM:206.8
数据库_交叉_引用: UMLS_CUI:C0153903
has_exact_synonym: Schilling's leukemia
有_obo_命名空间: disease_ontology
id: DOID:8527

Axiom
annotated source: monocytic leukemia
annotated property: definition
annotated target: A myeloid leukemia that is characterized by a dominance of monocytes in the marrow.
Resource Type: ECO_0007638
数据库_交叉_引用: url:https://en.wikipedia.org/wiki/Monocytic_leukemia

lip cancer
type: Class
subclass of: oral cavity cancer
subclass of: lip disease
has_alternative_id: DOID:8563
has_alternative_id: DOID:8605
has_alternative_id: DOID:8975
has_alternative_id: DOID:9031
has_alternative_id: DOID:9135
数据库_交叉_引用: ICD10CM:C00
数据库_交叉_引用: ICD10CM:C00.9
数据库_交叉_引用: ICD9CM:140
数据库_交叉_引用: ICD9CM:140.6
数据库_交叉_引用: ICD9CM:140.8
数据库_交叉_引用: MESH:D008048
数据库_交叉_引用: MTHICD9_2006:140.4
数据库_交叉_引用: MTHICD9_2006:140.5
数据库_交叉_引用: MTHICD9_2006:140.6
数据库_交叉_引用: MTHICD9_2006:140.9
数据库_交叉_引用: NCI2004_11_17:C7485
数据库_交叉_引用: NCI:C7485
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:93762003
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:93869001
数据库_交叉_引用: UMLS_CUI:C0153340
数据库_交叉_引用: UMLS_CUI:C0153346
数据库_交叉_引用: UMLS_CUI:C0153347
has_exact_synonym: malignant neoplasm of commissure of lip
has_exact_synonym: malignant neoplasm of external Lip, not specified as upper or lower
has_exact_synonym: malignant neoplasm of labial commissure of lip
has_exact_synonym: malignant neoplasm of lip
has_exact_synonym: malignant neoplasm of lip, external
has_exact_synonym: malignant neoplasm of lip, inner aspect
has_exact_synonym: malignant neoplasm of lip, vermilion border
has_exact_synonym: malignant neoplasm of lower lip, buccal aspect
has_exact_synonym: malignant neoplasm of lower lip, inner aspect
has_exact_synonym: malignant neoplasm of lower lip, mucosa
has_exact_synonym: malignant neoplasm of lower lip, oral aspect
has_exact_synonym: malignant neoplasm of oral aspect of lip, not specified whether upper or lower
has_exact_synonym: malignant neoplasm of other sites of lip
has_exact_synonym: malignant neoplasm of vermilion border of lip
has_exact_synonym: malignant tumor of commissure of lip
has_exact_synonym: malignant tumor of labial mucosa
has_exact_synonym: malignant tumor of lip
has_exact_synonym: malignant tumor of lower labial mucosa
has_exact_synonym: malignant tumor of the Lip
has_exact_synonym: malignant tumour of labial commissure
has_exact_synonym: malignant tumour of lip
有_obo_命名空间: disease_ontology
id: DOID:8564
in_subset: NCIthesaurus

oral cavity cancer
type: Class
subclass of: gastrointestinal system cancer
subclass of: mouth disease
definition: A gastrointestinal system cancer that is located_in the oral cavity.
has_alternative_id: DOID:0050627
has_alternative_id: DOID:8617
has_alternative_id: DOID:9049
has_alternative_id: DOID:9055
数据库_交叉_引用: GARD:9360
数据库_交叉_引用: ICD10CM:C04
数据库_交叉_引用: ICD10CM:C04.0
数据库_交叉_引用: ICD10CM:C04.1
数据库_交叉_引用: ICD10CM:C04.9
数据库_交叉_引用: ICD9CM:144
数据库_交叉_引用: ICD9CM:144.0
数据库_交叉_引用: ICD9CM:144.1
数据库_交叉_引用: ICD9CM:144.9
数据库_交叉_引用: MTH:NOCODE
数据库_交叉_引用: MTH:U001372
数据库_交叉_引用: NCI2004_11_17:C9318
数据库_交叉_引用: NCI:C9318
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:93672006
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:93802007
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:93860002
数据库_交叉_引用: UMLS_CUI:C0153368
数据库_交叉_引用: UMLS_CUI:C0153369
数据库_交叉_引用: UMLS_CUI:C0496758
has_exact_synonym: malignant neoplasm of anterior portion of floor of mouth
has_exact_synonym: malignant neoplasm of floor of mouth
has_exact_synonym: malignant neoplasm of lateral floor of mouth
has_exact_synonym: malignant neoplasm of lateral portion of floor of mouth
has_exact_synonym: malignant tumor of anterior floor of mouth
has_exact_synonym: malignant tumor of lateral floor of mouth
has_exact_synonym: malignant tumor of the Floor of the Mouth
有_obo_命名空间: disease_ontology
id: DOID:8618
in_subset: NCIthesaurus
in_subset: TopNodes DOcancerslim

Axiom
annotated source: oral cavity cancer
annotated property: definition
annotated target: A gastrointestinal system cancer that is located_in the oral cavity.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Oral_cancer

nervous system disease
type: Class
subclass of: disease of anatomical entity
definition: A disease of anatomical entity that is located_in the central nervous system or located_in the peripheral nervous system.
数据库_交叉_引用: ICD10CM:G00-G99
数据库_交叉_引用: ICD10CM:G98
数据库_交叉_引用: ICD10CM:G98.8
数据库_交叉_引用: ICD9CM:349.9
数据库_交叉_引用: MESH:D009422
数据库_交叉_引用: NCI:C26835
数据库_交叉_引用: UMLS_CUI:C0027765
有_obo_命名空间: disease_ontology
id: DOID:863
in_subset: DO GXD slim
in_subset: DO MGI slim
in_subset: NCIthesaurus

Axiom
annotated source: nervous system disease
annotated property: definition
annotated target: A disease of anatomical entity that is located_in the central nervous system or located_in the peripheral nervous system.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Nervous_system

vein disease
type: Class
subclass of: vascular disease
definition: A vascular disease that is located_in a vein.
数据库_交叉_引用: ICD10CM:I82
数据库_交叉_引用: ICD9CM:453
数据库_交叉_引用: UMLS_CUI:C0155774
有_obo_命名空间: disease_ontology
id: DOID:866

Axiom
annotated source: vein disease
annotated property: definition
annotated target: A vascular disease that is located_in a vein.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Vein#Venous_diseases

myeloid leukemia
type: Class
subclass of: leukemia
definition: A leukemia that is located_in myeloid tissue.
has_alternative_id: DOID:8878
has_alternative_id: DOID:8879
has_alternative_id: DOID:8910
has_alternative_id: DOID:9066
has_alternative_id: DOID:9126
数据库_交叉_引用: CSP2005:2004-4431
数据库_交叉_引用: GARD:8226
数据库_交叉_引用: ICD10CM:C92
数据库_交叉_引用: ICD10CM:C92.9
数据库_交叉_引用: ICD10CM:C92.90
数据库_交叉_引用: ICD9CM:205
数据库_交叉_引用: ICD9CM:205.9
数据库_交叉_引用: MESH:D007951
数据库_交叉_引用: MTH:NOCODE
数据库_交叉_引用: NCI2004_11_17:C3172
数据库_交叉_引用: NCI:C3172
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:37810007
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:94717009
数据库_交叉_引用: UMLS_CUI:C0023470
has_exact_synonym: Non-Lymphocytic Leukemia
has_exact_synonym: leukemia myelogenous
has_exact_synonym: myeloid granulocytic leukemia
有_obo_命名空间: disease_ontology
id: DOID:8692
in_subset: NCIthesaurus

Axiom
annotated source: myeloid leukemia
annotated property: definition
annotated target: A leukemia that is located_in myeloid tissue.
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Myeloid_leukemia

acute monocytic leukemia
type: Class
subclass of: monocytic leukemia
definition: A monocytic leukemia where the majority of monocytic cells are promonocytes.
has_alternative_id: DOID:9208
数据库_交叉_引用: GARD:525
数据库_交叉_引用: ICD9CM:206.0
数据库_交叉_引用: MESH:D007948
数据库_交叉_引用: NCI2004_11_17:C7318
数据库_交叉_引用: OMIM:151380
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:22331004
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:91859000
数据库_交叉_引用: UMLS_CUI:C0023465
has_exact_synonym: acute Monoblastic Leukemia and acute Monocytic Leukemia
has_exact_synonym: acute monocytic leukemia without mention of remission
has_exact_synonym: acute monocytic leukemia, FAB M5
has_exact_synonym: acute monocytic leukemia, morphology
有_obo_命名空间: disease_ontology
id: DOID:8864
comment: OMIM mapping confirmed by DO. [SN].
label: 急性单核细胞性白血病 @zh

Axiom
annotated source: acute monocytic leukemia
annotated property: definition
annotated target: A monocytic leukemia where the majority of monocytic cells are promonocytes.
Resource Type: ECO_0007636
数据库_交叉_引用: url:https://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&version=18.09d&ns=ncit&code=C4861

lower lip cancer
type: Class
subclass of: lip cancer
数据库_交叉_引用: ICD10CM:C00.1
数据库_交叉_引用: ICD9CM:140.1
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:94136008
数据库_交叉_引用: UMLS_CUI:C0432520
有_obo_命名空间: disease_ontology
id: DOID:8883

colorectal cancer
type: Class
subclass of: large intestine cancer
definition: A large intestine cancer that is located_in the colon and/or located_in the rectum.
数据库_交叉_引用: KEGG:05210
数据库_交叉_引用: MESH:D015179
数据库_交叉_引用: OMIM:114500
数据库_交叉_引用: UMLS_CUI:C1527249
有_obo_命名空间: disease_ontology
id: DOID:9256
in_subset: DO FlyBase slim
comment: Xref MGI. OMIM mapping confirmed by DO. [SN].

Axiom
annotated source: colorectal cancer
annotated property: definition
annotated target: A large intestine cancer that is located_in the colon and/or located_in the rectum.
Resource Type: ECO_0007637
Resource Type: ECO_0007641
数据库_交叉_引用: url:http://www.cancer.gov/dictionary?CdrID=444983

lip disease
type: Class
subclass of: mouth disease
数据库_交叉_引用: ICD10CM:K13.0
数据库_交叉_引用: ICD9CM:528.5
数据库_交叉_引用: ICD9CM_2006:528.5
数据库_交叉_引用: MESH:D008047
数据库_交叉_引用: NCI:C26818
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:90678009
数据库_交叉_引用: UMLS_CUI:C0023760
has_exact_synonym: disease of lips
有_obo_命名空间: disease_ontology
id: DOID:9297
in_subset: NCIthesaurus

myocardium cancer
type: Class
subclass of: heart cancer
has_alternative_id: DOID:14536
数据库_交叉_引用: NCI2004_11_17:C4569
数据库_交叉_引用: NCI2004_11_17:C5349
数据库_交叉_引用: NCI:C4569
数据库_交叉_引用: NCI:C5349
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:93914000
数据库_交叉_引用: UMLS_CUI:C0346611
数据库_交叉_引用: UMLS_CUI:C1290402
has_exact_synonym: malignant Myocardial tumor
has_exact_synonym: malignant neoplasm of myocardium
has_exact_synonym: tumor of Myocardium
有_obo_命名空间: disease_ontology
id: DOID:9299
in_subset: NCIthesaurus

orbital disease
type: Class
subclass of: eye adnexa disease
definition: An adnexa disease that is located_in the eye socket.
数据库_交叉_引用: ICD10CM:H05
数据库_交叉_引用: ICD10CM:H05.9
数据库_交叉_引用: ICD9CM:376
数据库_交叉_引用: ICD9CM:376.9
数据库_交叉_引用: MESH:D009916
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:11270005
数据库_交叉_引用: UMLS_CUI:C0029182
有_obo_命名空间: disease_ontology
id: DOID:930

Axiom
annotated source: orbital disease
annotated property: definition
annotated target: An adnexa disease that is located_in the eye socket.
数据库_交叉_引用: url:http://www.hopkinsmedicine.org/wilmer/services/oculofacial_plastic_surgery/reconstructive/orbital_disease.html

brain disease
type: Class
subclass of: central nervous system disease
definition: A central nervous system disease that is located_in the brain.
has_alternative_id: DOID:8510
数据库_交叉_引用: ICD10CM:G93.40
数据库_交叉_引用: ICD10CM:G93.9
数据库_交叉_引用: ICD9CM:348.3
数据库_交叉_引用: ICD9CM:348.30
数据库_交叉_引用: ICD9CM:348.9
数据库_交叉_引用: MESH:D001927
数据库_交叉_引用: NCI:C26920
数据库_交叉_引用: NCI:C96413
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:76011009
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:81308009
数据库_交叉_引用: UMLS_CUI:C0006111
数据库_交叉_引用: UMLS_CUI:C0085584
has_exact_synonym: encephalopathy
有_obo_命名空间: disease_ontology
id: DOID:936
in_subset: NCIthesaurus

Axiom
annotated source: brain disease
annotated property: definition
annotated target: A central nervous system disease that is located_in the brain.
数据库_交叉_引用: url:https://medlineplus.gov/braindiseases.html

leukocyte disease
type: Class
subclass of: hematopoietic system disease
definition: A hematopoietic system disease that is located_in white blood cells.
数据库_交叉_引用: ICD10CM:D72.9
数据库_交叉_引用: ICD9CM:288
数据库_交叉_引用: ICD9CM:288.9
数据库_交叉_引用: MESH:D007960
数据库_交叉_引用: SNOMEDCT_US_2018_03_01:54097007
数据库_交叉_引用: UMLS_CUI:C0023510
有_obo_命名空间: disease_ontology
id: DOID:9500

Axiom
annotated source: leukocyte disease
annotated property: definition
annotated target: A hematopoietic system disease that is located_in white blood cells.
Resource Type: ECO_0007636
数据库_交叉_引用: url:https://rarediseases.org/rare-diseases/leukocyte-adhesion-deficiency-syndromes/

upper respiratory tract disease
type: Class
subclass of: respiratory system disease
definition: A respiratory system disease which involves the upper respiratory tract.
数据库_交叉_引用: ICD9CM:478.1
数据库_交叉_引用: ICD9CM:478.19
数据库_交叉_引用: UMLS_CUI:C0029581
有_obo_命名空间: disease_ontology
id: DOID:974

Axiom
annotated source: upper respiratory tract disease
annotated property: definition
annotated target: A respiratory system disease which involves the upper respiratory tract.
Resource Type: ECO_0007637
Resource Type: ECO_0007638
数据库_交叉_引用: url:http://en.wikipedia.org/wiki/Category:Upper_respiratory_tract_diseases
数据库_交叉_引用: url:http://www.who.int/topics/respiratory_tract_diseases/en/

immune system process
type: Class
subclass of: biological_process
definition: Any process involved in the development or functioning of the immune system, an organismal system for calibrated responses to potential internal or invasive threats.
数据库_交叉_引用: Wikipedia:Immune_system
有_obo_命名空间: biological_process
id: GO:0002376
in_subset: goslim agr
in_subset: goslim chembl
in_subset: goslim flybase ribbon
in_subset: goslim generic
in_subset: goslim mouse
in_subset: goslim pir
comment: Note that this term is a direct child of 'biological_process ; GO:0008150' because some immune system processes are types of cellular process (GO:0009987), whereas others are types of multicellular organism process (GO:0032501). This term was added by GO_REF:0000022.

Axiom
annotated source: immune system process
annotated property: definition
annotated target: Any process involved in the development or functioning of the immune system, an organismal system for calibrated responses to potential internal or invasive threats.
数据库_交叉_引用: GOC:add
数据库_交叉_引用: GOC:mtg_15nov05
数据库_交叉_引用: GO_REF:0000022

regulation of immune system process
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: regulates
    some values from: immune system process
subclass of: regulation of biological process
subclass of: Restriction
  on property: regulates
  some values from: immune system process
definition: Any process that modulates the frequency, rate, or extent of an immune system process.
有_obo_命名空间: biological_process
id: GO:0002682

Axiom
annotated source: regulation of immune system process
annotated property: definition
annotated target: Any process that modulates the frequency, rate, or extent of an immune system process.
数据库_交叉_引用: GOC:add

negative regulation of immune system process
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: negatively regulates
    some values from: immune system process
subclass of: regulation of immune system process
subclass of: negative regulation of biological process
subclass of: Restriction
  on property: negatively regulates
  some values from: immune system process
definition: Any process that stops, prevents, or reduces the frequency, rate, or extent of an immune system process.
has_exact_synonym: down regulation of immune system process
has_exact_synonym: down-regulation of immune system process
has_exact_synonym: downregulation of immune system process
has_narrow_synonym: inhibition of immune system process
有_obo_命名空间: biological_process
id: GO:0002683

Axiom
annotated source: negative regulation of immune system process
annotated property: definition
annotated target: Any process that stops, prevents, or reduces the frequency, rate, or extent of an immune system process.
数据库_交叉_引用: GOC:add

positive regulation of immune system process
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: positively regulates
    some values from: immune system process
subclass of: regulation of immune system process
subclass of: positive regulation of biological process
subclass of: Restriction
  on property: positively regulates
  some values from: immune system process
definition: Any process that activates or increases the frequency, rate, or extent of an immune system process.
has_exact_synonym: up regulation of immune system process
has_exact_synonym: up-regulation of immune system process
has_exact_synonym: upregulation of immune system process
has_narrow_synonym: activation of immune system process
has_narrow_synonym: stimulation of immune system process
有_obo_命名空间: biological_process
id: GO:0002684

Axiom
annotated source: positive regulation of immune system process
annotated property: definition
annotated target: Any process that activates or increases the frequency, rate, or extent of an immune system process.
数据库_交叉_引用: GOC:add

GO:molecular_function
type: Class
subclass of: process
editor preferred label: molecular_function
definition: A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs. These actions are described from two distinct but related perspectives: (1) biochemical activity, and (2) role as a component in a larger system/process.
imported from: go.owl
OBO foundry unique label: molecular process
has_alternative_id: GO:0005554
has_exact_synonym: molecular function
有_obo_命名空间: molecular_function
id: GO:0003674
in_subset: goslim aspergillus
in_subset: goslim candida
in_subset: goslim chembl
in_subset: goslim generic
in_subset: goslim metagenomics
in_subset: goslim pir
in_subset: goslim plant
in_subset: goslim yeast
comment: Note that, in addition to forming the root of the molecular function ontology, this term is recommended for use for the annotation of gene products whose molecular function is unknown. When this term is used for annotation, it indicates that no information was available about the molecular function of the gene product annotated as of the date the annotation was made; the evidence code "no data" (ND), is used to indicate this. Despite its name, this is not a type of 'function' in the sense typically defined by upper ontologies such as Basic Formal Ontology (BFO). It is instead a BFO:process carried out by a single gene product or complex.
label: molecular_function

Axiom
annotated source: GO:molecular_function
annotated property: definition
annotated target: A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs. These actions are described from two distinct but related perspectives: (1) biochemical activity, and (2) role as a component in a larger system/process.
数据库_交叉_引用: GOC:pdt

catalytic activity
type: Class
subclass of: GO:molecular_function
editor preferred label: catalytic activity
definition: Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
imported from: go.owl
数据库_交叉_引用: Wikipedia:Enzyme
has_exact_synonym: enzyme activity
有_obo_命名空间: molecular_function
id: GO:0003824
in_subset: goslim chembl
in_subset: goslim flybase ribbon
in_subset: goslim metagenomics
in_subset: goslim pir
in_subset: goslim plant

Axiom
annotated source: catalytic activity
annotated property: definition
annotated target: Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
数据库_交叉_引用: GOC:vw
数据库_交叉_引用: ISBN:0198506732

Axiom
annotated source: catalytic activity
annotated property: has_exact_synonym
annotated target: enzyme activity
数据库_交叉_引用: GOC:dph
数据库_交叉_引用: GOC:tb

GO_0004872
type: Class
subclass of: Thing
has obsolescence reason: IAO_0000227
term replaced by: signaling receptor activity
deprecated: true

signaling receptor binding
type: Class
subclass of: protein binding
definition: Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.
has_broad_synonym: receptor binding
数据库_交叉_引用: Wikipedia:Ligand_(biochemistry)
has_narrow_synonym: receptor ligand
有_obo_命名空间: molecular_function
has_related_synonym: receptor-associated protein activity
id: GO:0005102
in_subset: goslim agr
in_subset: goslim chembl
in_subset: goslim flybase ribbon
in_subset: goslim mouse
in_subset: goslim plant
comment: Where appropriate, also consider annotating to 'receptor agonist activity ; GO:0048018'.

Axiom
annotated source: signaling receptor binding
annotated property: definition
annotated target: Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.
数据库_交叉_引用: GOC:bf
数据库_交叉_引用: GOC:ceb
数据库_交叉_引用: ISBN:0198506732

binding
type: Class
subclass of: GO:molecular_function
definition: The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule.
数据库_交叉_引用: Wikipedia:Binding_(molecular)
has_narrow_synonym: ligand
有_obo_命名空间: molecular_function
id: GO:0005488
in_subset: gocheck do not annotate
in_subset: goslim pir
in_subset: goslim plant
comment: Note that this term is in the subset of terms that should not be used for direct, manual gene product annotation. Please choose a more specific child term, or request a new one if no suitable term is available. For ligands that bind to signal transducing receptors, consider the molecular function term 'receptor binding ; GO:0005102' and its children.

Axiom
annotated source: binding
annotated property: definition
annotated target: The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule.
数据库_交叉_引用: GOC:ceb
数据库_交叉_引用: GOC:mah
数据库_交叉_引用: ISBN:0198506732

protein binding
type: Class
subclass of: binding
definition: Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
has_alternative_id: GO:0001948
has_alternative_id: GO:0045308
数据库_交叉_引用: MIPS_funcat:16.01
数据库_交叉_引用: MIPS_funcat:18.01.07
数据库_交叉_引用: Reactome:R-HSA-170835
数据库_交叉_引用: Reactome:R-HSA-170846
has_exact_synonym: protein amino acid binding
has_narrow_synonym: glycoprotein binding
有_obo_命名空间: molecular_function
id: GO:0005515
in_subset: goslim aspergillus
in_subset: goslim candida
in_subset: goslim chembl
in_subset: goslim metagenomics
in_subset: goslim pir
in_subset: goslim plant

Axiom
annotated source: protein binding
annotated property: definition
annotated target: Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
数据库_交叉_引用: GOC:go_curators

An anchoring protein, ZFYVE9 (SARA), recruits SMAD2/3
type: Axiom
annotated source: protein binding
annotated property: 数据库_交叉_引用
annotated target: Reactome:R-HSA-170835

TGFBR2 recruits TGFBR1
type: Axiom
annotated source: protein binding
annotated property: 数据库_交叉_引用
annotated target: Reactome:R-HSA-170846

phosphorus metabolic process
type: Class
subclass of: cellular metabolic process
definition: The chemical reactions and pathways involving the nonmetallic element phosphorus or compounds that contain phosphorus, usually in the form of a phosphate group (PO4).
has_exact_synonym: phosphorus metabolism
有_obo_命名空间: biological_process
id: GO:0006793
in_subset: goslim pir

Axiom
annotated source: phosphorus metabolic process
annotated property: definition
annotated target: The chemical reactions and pathways involving the nonmetallic element phosphorus or compounds that contain phosphorus, usually in the form of a phosphate group (PO4).
数据库_交叉_引用: GOC:ai

phosphate-containing compound metabolic process
type: Class
subclass of: phosphorus metabolic process
definition: The chemical reactions and pathways involving the phosphate group, the anion or salt of any phosphoric acid.
数据库_交叉_引用: MIPS_funcat:01.04
has_exact_synonym: phosphate metabolism
有_obo_命名空间: biological_process
has_related_synonym: phosphate metabolic process
id: GO:0006796

Axiom
annotated source: phosphate-containing compound metabolic process
annotated property: definition
annotated target: The chemical reactions and pathways involving the phosphate group, the anion or salt of any phosphoric acid.
数据库_交叉_引用: GOC:ai

immune response
type: Class
subclass of: immune system process
subclass of: response to stimulus
editor preferred label: immune response
definition: Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat.
imported from: go.owl
数据库_交叉_引用: MIPS_funcat:36.25.16
有_obo_命名空间: biological_process
id: GO:0006955
comment: This term was improved by GO_REF:0000022. It was redefined and moved.

Axiom
annotated source: immune response
annotated property: definition
annotated target: Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat.
数据库_交叉_引用: GOC:add
数据库_交叉_引用: GOC:mtg_15nov05
数据库_交叉_引用: GO_REF:0000022

cell communication
type: Class
subclass of: cellular process
definition: Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment.
数据库_交叉_引用: Wikipedia:Cell_signaling
有_obo_命名空间: biological_process
id: GO:0007154
in_subset: goslim pir
in_subset: goslim plant

Axiom
annotated source: cell communication
annotated property: definition
annotated target: Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment.
数据库_交叉_引用: GOC:mah

signal transduction
type: Class
subclass of: cellular process
subclass of: regulation of cellular process
subclass of: Restriction
  on property: part of
  some values from: cell communication
subclass of: Restriction
  on property: part of
  some values from: signaling
subclass of: Restriction
  on property: part of
  some values from: cellular response to stimulus
definition: The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
has_alternative_id: GO:0023033
数据库_交叉_引用: MIPS_funcat:30
数据库_交叉_引用: Wikipedia:Signal_transduction
has_narrow_synonym: signaling cascade
has_narrow_synonym: signalling cascade
有_obo_命名空间: biological_process
has_related_synonym: signaling pathway
has_related_synonym: signalling pathway
id: GO:0007165
in_subset: goslim aspergillus
in_subset: goslim candida
in_subset: goslim chembl
in_subset: goslim generic
in_subset: goslim metagenomics
in_subset: goslim plant
comment: Note that signal transduction is defined broadly to include a ligand interacting with a receptor, downstream signaling steps and a response being triggered. A change in form of the signal in every step is not necessary. Note that in many cases the end of this process is regulation of the initiation of transcription. Note that specific transcription factors may be annotated to this term, but core/general transcription machinery such as RNA polymerase should not.

Axiom
annotated source: signal transduction
annotated property: definition
annotated target: The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
数据库_交叉_引用: GOC:go_curators
数据库_交叉_引用: GOC:mtg_signaling_feb11

Axiom
annotated source: signal transduction
annotated property: has_related_synonym
annotated target: signalling pathway
数据库_交叉_引用: GOC:mah

biological_process
type: Class
subclass of: process
disjoint with: planned process
editor preferred label: biological_process
definition: A biological process represents a specific objective that the organism is genetically programmed to achieve. Biological processes are often described by their outcome or ending state, e.g., the biological process of cell division results in the creation of two daughter cells (a divided cell) from a single parent cell. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence.
definition: Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
imported from: go.owl
imported from: ido.owl
created_by: janelomax
creation_date: 2012-09-19T15:05:24Z
has_alternative_id: GO:0000004
has_alternative_id: GO:0007582
has_alternative_id: GO:0044699
数据库_交叉_引用: Wikipedia:Biological_process
has_exact_synonym: biological process
has_exact_synonym: physiological process
有_obo_命名空间: biological_process
has_related_synonym: single organism process
has_related_synonym: single-organism process
id: GO:0008150
in_subset: goslim aspergillus
in_subset: goslim candida
in_subset: goslim chembl
in_subset: goslim generic
in_subset: goslim metagenomics
in_subset: goslim pir
in_subset: goslim plant
in_subset: goslim pombe
in_subset: goslim yeast
comment: Note that, in addition to forming the root of the biological process ontology, this term is recommended for use for the annotation of gene products whose biological process is unknown. When this term is used for annotation, it indicates that no information was available about the biological process of the gene product annotated as of the date the annotation was made; the evidence code "no data" (ND), is used to indicate this.

Axiom
annotated source: biological_process
annotated property: definition
annotated target: A biological process represents a specific objective that the organism is genetically programmed to achieve. Biological processes are often described by their outcome or ending state, e.g., the biological process of cell division results in the creation of two daughter cells (a divided cell) from a single parent cell. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence.
数据库_交叉_引用: GOC:pdt

metabolic process
type: Class
subclass of: biological_process
definition: The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
created_by: janelomax
creation_date: 2012-10-17T15:46:40Z
has_alternative_id: GO:0044236
has_alternative_id: GO:0044710
数据库_交叉_引用: MIPS_funcat:01
数据库_交叉_引用: Wikipedia:Metabolism
has_exact_synonym: metabolism
has_narrow_synonym: metabolic process resulting in cell growth
has_narrow_synonym: metabolism resulting in cell growth
has_narrow_synonym: multicellular organism metabolic process
有_obo_命名空间: biological_process
has_related_synonym: single-organism metabolic process
id: GO:0008152
in_subset: gocheck do not manually annotate
in_subset: goslim chembl
in_subset: goslim metagenomics
in_subset: goslim pir
in_subset: goslim plant
comment: Note that metabolic processes do not include single functions or processes such as protein-protein interactions, protein-nucleic acids, nor receptor-ligand interactions.

Axiom
annotated source: metabolic process
annotated property: definition
annotated target: The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
数据库_交叉_引用: GOC:go_curators
数据库_交叉_引用: ISBN:0198547684

negative regulation of metabolic process
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: negatively regulates
    some values from: metabolic process
subclass of: regulation of metabolic process
subclass of: negative regulation of biological process
subclass of: Restriction
  on property: negatively regulates
  some values from: metabolic process
definition: Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism.
has_alternative_id: GO:0044252
has_exact_synonym: down regulation of metabolic process
has_exact_synonym: down-regulation of metabolic process
has_exact_synonym: downregulation of metabolic process
has_exact_synonym: negative regulation of metabolism
has_exact_synonym: negative regulation of organismal metabolism
has_narrow_synonym: inhibition of metabolic process
has_narrow_synonym: inhibition of organismal metabolic process
has_narrow_synonym: negative regulation of multicellular organismal metabolic process
有_obo_命名空间: biological_process
id: GO:0009892

Axiom
annotated source: negative regulation of metabolic process
annotated property: definition
annotated target: Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism.
数据库_交叉_引用: GOC:go_curators

positive regulation of metabolic process
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: positively regulates
    some values from: metabolic process
subclass of: regulation of metabolic process
subclass of: positive regulation of biological process
subclass of: Restriction
  on property: positively regulates
  some values from: metabolic process
definition: Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism.
has_alternative_id: GO:0044253
has_exact_synonym: positive regulation of metabolism
has_exact_synonym: up regulation of metabolic process
has_exact_synonym: up-regulation of metabolic process
has_exact_synonym: upregulation of metabolic process
has_narrow_synonym: activation of metabolic process
has_narrow_synonym: positive regulation of multicellular organismal metabolic process
has_narrow_synonym: positive regulation of organismal metabolism
has_narrow_synonym: stimulation of metabolic process
has_narrow_synonym: stimulation of organismal metabolic process
has_narrow_synonym: up-regulation of organismal metabolic process
有_obo_命名空间: biological_process
id: GO:0009893

Axiom
annotated source: positive regulation of metabolic process
annotated property: definition
annotated target: Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism.
数据库_交叉_引用: GOC:go_curators

regulation of signal transduction
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: regulates
    some values from: signal transduction
subclass of: regulation of cell communication
subclass of: regulation of signaling
subclass of: regulation of response to stimulus
subclass of: Restriction
  on property: regulates
  some values from: signal transduction
definition: Any process that modulates the frequency, rate or extent of signal transduction.
has_alternative_id: GO:0035466
有_obo_命名空间: biological_process
has_related_synonym: regulation of signaling pathway
has_related_synonym: regulation of signalling pathway
id: GO:0009966

Axiom
annotated source: regulation of signal transduction
annotated property: definition
annotated target: Any process that modulates the frequency, rate or extent of signal transduction.
数据库_交叉_引用: GOC:sm

Axiom
annotated source: regulation of signal transduction
annotated property: has_related_synonym
annotated target: regulation of signalling pathway
数据库_交叉_引用: GOC:mah

positive regulation of signal transduction
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: positively regulates
    some values from: signal transduction
subclass of: regulation of signal transduction
subclass of: positive regulation of cell communication
subclass of: positive regulation of signaling
subclass of: positive regulation of response to stimulus
subclass of: Restriction
  on property: positively regulates
  some values from: signal transduction
definition: Any process that activates or increases the frequency, rate or extent of signal transduction.
has_alternative_id: GO:0035468
has_exact_synonym: up regulation of signal transduction
has_exact_synonym: up-regulation of signal transduction
has_exact_synonym: upregulation of signal transduction
has_narrow_synonym: activation of signal transduction
has_narrow_synonym: stimulation of signal transduction
有_obo_命名空间: biological_process
has_related_synonym: positive regulation of signaling pathway
has_related_synonym: positive regulation of signalling pathway
id: GO:0009967

Axiom
annotated source: positive regulation of signal transduction
annotated property: definition
annotated target: Any process that activates or increases the frequency, rate or extent of signal transduction.
数据库_交叉_引用: GOC:sm

Axiom
annotated source: positive regulation of signal transduction
annotated property: has_related_synonym
annotated target: positive regulation of signalling pathway
数据库_交叉_引用: GOC:mah

negative regulation of signal transduction
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: negatively regulates
    some values from: signal transduction
subclass of: regulation of signal transduction
subclass of: negative regulation of cell communication
subclass of: negative regulation of signaling
subclass of: negative regulation of response to stimulus
subclass of: Restriction
  on property: negatively regulates
  some values from: signal transduction
definition: Any process that stops, prevents, or reduces the frequency, rate or extent of signal transduction.
has_alternative_id: GO:0035467
has_exact_synonym: down regulation of signal transduction
has_exact_synonym: down-regulation of signal transduction
has_exact_synonym: downregulation of signal transduction
has_narrow_synonym: inhibition of signal transduction
有_obo_命名空间: biological_process
has_related_synonym: negative regulation of signaling pathway
has_related_synonym: negative regulation of signalling pathway
id: GO:0009968

Axiom
annotated source: negative regulation of signal transduction
annotated property: definition
annotated target: Any process that stops, prevents, or reduces the frequency, rate or extent of signal transduction.
数据库_交叉_引用: GOC:sm

Axiom
annotated source: negative regulation of signal transduction
annotated property: has_related_synonym
annotated target: negative regulation of signalling pathway
数据库_交叉_引用: GOC:mah

cellular process
type: Class
subclass of: biological_process
editor preferred label: cellular process
definition: Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
imported from: go.owl
created_by: janelomax
creation_date: 2012-12-11T16:56:55Z
has_alternative_id: GO:0008151
has_alternative_id: GO:0044763
has_alternative_id: GO:0050875
has_exact_synonym: cell physiology
has_exact_synonym: cellular physiological process
has_narrow_synonym: cell growth and/or maintenance
有_obo_命名空间: biological_process
has_related_synonym: single-organism cellular process
id: GO:0009987
in_subset: goslim plant

Axiom
annotated source: cellular process
annotated property: definition
annotated target: Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
数据库_交叉_引用: GOC:go_curators
数据库_交叉_引用: GOC:isa_complete

regulation of signaling receptor activity
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: regulates
    some values from: signaling receptor activity
subclass of: regulation of signal transduction
subclass of: regulation of molecular function
subclass of: Restriction
  on property: regulates
  some values from: signaling receptor activity
definition: Any process that modulates the frequency, rate or extent of a signaling receptor activity. Receptor activity is when a molecule combines with an extracellular or intracellular messenger to initiate a change in cell activity.
has_broad_synonym: regulation of receptor activity
有_obo_命名空间: biological_process
id: GO:0010469

Axiom
annotated source: regulation of signaling receptor activity
annotated property: definition
annotated target: Any process that modulates the frequency, rate or extent of a signaling receptor activity. Receptor activity is when a molecule combines with an extracellular or intracellular messenger to initiate a change in cell activity.
数据库_交叉_引用: GOC:dph
数据库_交叉_引用: GOC:tb

positive regulation of phosphorus metabolic process
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: positively regulates
    some values from: phosphorus metabolic process
subclass of: positive regulation of cellular metabolic process
subclass of: regulation of phosphorus metabolic process
subclass of: Restriction
  on property: positively regulates
  some values from: phosphorus metabolic process
definition: Any process that increases the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus.
有_obo_命名空间: biological_process
id: GO:0010562

Axiom
annotated source: positive regulation of phosphorus metabolic process
annotated property: definition
annotated target: Any process that increases the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus.
数据库_交叉_引用: GOC:dph
数据库_交叉_引用: GOC:tb

negative regulation of phosphorus metabolic process
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: negatively regulates
    some values from: phosphorus metabolic process
subclass of: negative regulation of cellular metabolic process
subclass of: regulation of phosphorus metabolic process
subclass of: Restriction
  on property: negatively regulates
  some values from: phosphorus metabolic process
definition: Any process that decreases the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus.
有_obo_命名空间: biological_process
id: GO:0010563

Axiom
annotated source: negative regulation of phosphorus metabolic process
annotated property: definition
annotated target: Any process that decreases the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus.
数据库_交叉_引用: GOC:dph
数据库_交叉_引用: GOC:tb

regulation of cell communication
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: regulates
    some values from: cell communication
subclass of: regulation of cellular process
subclass of: Restriction
  on property: regulates
  some values from: cell communication
definition: Any process that modulates the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment.
有_obo_命名空间: biological_process
id: GO:0010646

Axiom
annotated source: regulation of cell communication
annotated property: definition
annotated target: Any process that modulates the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment.
数据库_交叉_引用: GOC:dph
数据库_交叉_引用: GOC:tb

positive regulation of cell communication
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: positively regulates
    some values from: cell communication
subclass of: regulation of cell communication
subclass of: positive regulation of cellular process
subclass of: Restriction
  on property: positively regulates
  some values from: cell communication
definition: Any process that increases the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment.
有_obo_命名空间: biological_process
id: GO:0010647

Axiom
annotated source: positive regulation of cell communication
annotated property: definition
annotated target: Any process that increases the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment.
数据库_交叉_引用: GOC:dph
数据库_交叉_引用: GOC:tb

negative regulation of cell communication
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: negatively regulates
    some values from: cell communication
subclass of: regulation of cell communication
subclass of: negative regulation of cellular process
subclass of: Restriction
  on property: negatively regulates
  some values from: cell communication
definition: Any process that decreases the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment.
有_obo_命名空间: biological_process
id: GO:0010648

Axiom
annotated source: negative regulation of cell communication
annotated property: definition
annotated target: Any process that decreases the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment.
数据库_交叉_引用: GOC:dph
数据库_交叉_引用: GOC:tb

kinase activity
type: Class
subclass of: transferase activity, transferring phosphorus-containing groups
subclass of: Restriction
  on property: part of
  some values from: phosphorylation
subclass of: Restriction
  on property: is kinase activity
  has self: true
definition: Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
数据库_交叉_引用: Reactome:R-HSA-6788855
数据库_交叉_引用: Reactome:R-HSA-6788867
has_exact_synonym: phosphokinase activity
有_obo_命名空间: molecular_function
id: GO:0016301
in_subset: goslim chembl
in_subset: goslim generic
in_subset: goslim metagenomics
in_subset: goslim plant
in_subset: goslim yeast
comment: Note that this term encompasses all activities that transfer a single phosphate group; although ATP is by far the most common phosphate donor, reactions using other phosphate donors are included in this term.

Axiom
annotated source: kinase activity
annotated property: definition
annotated target: Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
数据库_交叉_引用: ISBN:0198506732

FN3KRP phosphorylates PsiAm, RibAm
type: Axiom
annotated source: kinase activity
annotated property: 数据库_交叉_引用
annotated target: Reactome:R-HSA-6788855

FN3K phosphorylates ketosamines
type: Axiom
annotated source: kinase activity
annotated property: 数据库_交叉_引用
annotated target: Reactome:R-HSA-6788867

phosphorylation
type: Class
subclass of: phosphate-containing compound metabolic process
definition: The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
数据库_交叉_引用: Wikipedia:Phosphorylation
有_obo_命名空间: biological_process
id: GO:0016310
in_subset: goslim chembl
in_subset: goslim metagenomics

Axiom
annotated source: phosphorylation
annotated property: definition
annotated target: The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
数据库_交叉_引用: ISBN:0198506732

transferase activity
type: Class
subclass of: catalytic activity
definition: Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
数据库_交叉_引用: EC:2
数据库_交叉_引用: Reactome:R-HSA-1483089
数据库_交叉_引用: Reactome:R-HSA-1483186
数据库_交叉_引用: Reactome:R-HSA-5668414
数据库_交叉_引用: Reactome:R-HSA-6787403
数据库_交叉_引用: Reactome:R-HSA-8868783
有_obo_命名空间: molecular_function
id: GO:0016740
in_subset: goslim agr
in_subset: goslim aspergillus
in_subset: goslim candida
in_subset: goslim chembl
in_subset: goslim metagenomics
in_subset: goslim mouse
in_subset: goslim pir
in_subset: goslim plant
in_subset: goslim yeast

Axiom
annotated source: transferase activity
annotated property: definition
annotated target: Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
数据库_交叉_引用: ISBN:0198506732

PE is converted to PS by PTDSS2
type: Axiom
annotated source: transferase activity
annotated property: 数据库_交叉_引用
annotated target: Reactome:R-HSA-1483089

PC is converted to PS by PTDSS1
type: Axiom
annotated source: transferase activity
annotated property: 数据库_交叉_引用
annotated target: Reactome:R-HSA-1483186

TRAF2 ubiquitinates cIAP1,2 in cIAP1,2:TRAF1:TRAF2:TRAF3:NIK
type: Axiom
annotated source: transferase activity
annotated property: 数据库_交叉_引用
annotated target: Reactome:R-HSA-5668414

GTPBP3 and MTO1 transform uridine-34 yielding 5-taurinomethyluridine-34 in tRNA
type: Axiom
annotated source: transferase activity
annotated property: 数据库_交叉_引用
annotated target: Reactome:R-HSA-6787403

TSR3 transfers aminocarboxypropyl group from S-adenosylmethionine to N(1)-methylpseudouridine-1248 of 18SE rRNA yielding N(1)-methyl-N(3)-aminocarboxypropylpseudouridine-1248
type: Axiom
annotated source: transferase activity
annotated property: 数据库_交叉_引用
annotated target: Reactome:R-HSA-8868783

transferase activity, transferring phosphorus-containing groups
type: Class
subclass of: transferase activity
definition: Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor).
数据库_交叉_引用: EC:2.7
有_obo_命名空间: molecular_function
id: GO:0016772
in_subset: goslim chembl
comment: Note that this term encompasses all kinase activities, as well as activities that transfer other phosphorus-containing groups such as diphosphate or nucleotides.

Axiom
annotated source: transferase activity, transferring phosphorus-containing groups
annotated property: definition
annotated target: Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor).
数据库_交叉_引用: GOC:jl
数据库_交叉_引用: ISBN:0198506732

regulation of phosphate metabolic process
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: regulates
    some values from: phosphate-containing compound metabolic process
subclass of: regulation of phosphorus metabolic process
subclass of: Restriction
  on property: regulates
  some values from: phosphate-containing compound metabolic process
definition: Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving phosphates.
has_exact_synonym: regulation of phosphate metabolism
有_obo_命名空间: biological_process
id: GO:0019220

Axiom
annotated source: regulation of phosphate metabolic process
annotated property: definition
annotated target: Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving phosphates.
数据库_交叉_引用: GOC:go_curators

regulation of metabolic process
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: regulates
    some values from: metabolic process
subclass of: regulation of biological process
subclass of: Restriction
  on property: regulates
  some values from: metabolic process
definition: Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism.
has_alternative_id: GO:0044246
has_exact_synonym: regulation of metabolism
has_narrow_synonym: regulation of multicellular organismal metabolic process
has_narrow_synonym: regulation of organismal metabolic process
有_obo_命名空间: biological_process
id: GO:0019222
in_subset: goslim metagenomics

Axiom
annotated source: regulation of metabolic process
annotated property: definition
annotated target: Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism.
数据库_交叉_引用: GOC:go_curators

Axiom
annotated source: regulation of metabolic process
annotated property: has_narrow_synonym
annotated target: regulation of organismal metabolic process
数据库_交叉_引用: GOC:tb

biological adhesion
type: Class
subclass of: biological_process
definition: The attachment of a cell or organism to a substrate, another cell, or other organism. Biological adhesion includes intracellular attachment between membrane regions.
有_obo_命名空间: biological_process
id: GO:0022610
in_subset: goslim pir

Axiom
annotated source: biological adhesion
annotated property: definition
annotated target: The attachment of a cell or organism to a substrate, another cell, or other organism. Biological adhesion includes intracellular attachment between membrane regions.
数据库_交叉_引用: GOC:isa_complete

regulation of signaling
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: regulates
    some values from: signaling
subclass of: regulation of biological process
subclass of: Restriction
  on property: regulates
  some values from: signaling
definition: Any process that modulates the frequency, rate or extent of a signaling process.
creation_date: 2010-02-16T09:30:50Z
有_obo_命名空间: biological_process
has_related_synonym: regulation of signaling process
has_related_synonym: regulation of signalling process
id: GO:0023051

Axiom
annotated source: regulation of signaling
annotated property: definition
annotated target: Any process that modulates the frequency, rate or extent of a signaling process.
数据库_交叉_引用: GOC:mtg_signal

Axiom
annotated source: regulation of signaling
annotated property: has_related_synonym
annotated target: regulation of signaling process
数据库_交叉_引用: GOC:bf

Axiom
annotated source: regulation of signaling
annotated property: has_related_synonym
annotated target: regulation of signalling process
数据库_交叉_引用: GOC:mah

signaling
type: Class
subclass of: biological_process
definition: The entirety of a process in which information is transmitted within a biological system. This process begins with an active signal and ends when a cellular response has been triggered.
created_by: janelomax
creation_date: 2010-02-16T09:30:50Z
has_alternative_id: GO:0023046
has_alternative_id: GO:0044700
has_exact_synonym: biological signaling
has_exact_synonym: signaling process
has_exact_synonym: signalling
有_obo_命名空间: biological_process
has_related_synonym: signalling process
has_related_synonym: single organism signaling
id: GO:0023052
in_subset: goslim agr
in_subset: goslim flybase ribbon
in_subset: goslim mouse
in_subset: goslim pombe
in_subset: goslim yeast
comment: Note that a signal is any variable property or parameter that serves to convey information, and may be a physical entity such as a gene product or small molecule, a photon, or a change in state such as movement or voltage change.

Axiom
annotated source: signaling
annotated property: definition
annotated target: The entirety of a process in which information is transmitted within a biological system. This process begins with an active signal and ends when a cellular response has been triggered.
数据库_交叉_引用: GOC:mtg_signal
数据库_交叉_引用: GOC:mtg_signaling_feb11
数据库_交叉_引用: GOC:signaling

Axiom
annotated source: signaling
annotated property: has_related_synonym
annotated target: signalling process
数据库_交叉_引用: GOC:mah

positive regulation of signaling
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: positively regulates
    some values from: signaling
subclass of: regulation of signaling
subclass of: positive regulation of biological process
subclass of: Restriction
  on property: positively regulates
  some values from: signaling
definition: Any process that activates, maintains or increases the frequency, rate or extent of a signaling process.
creation_date: 2010-02-16T09:30:50Z
has_exact_synonym: positive regulation of signalling process
有_obo_命名空间: biological_process
has_related_synonym: positive regulation of signaling process
id: GO:0023056

Axiom
annotated source: positive regulation of signaling
annotated property: definition
annotated target: Any process that activates, maintains or increases the frequency, rate or extent of a signaling process.
数据库_交叉_引用: GOC:mtg_signal

Axiom
annotated source: positive regulation of signaling
annotated property: has_exact_synonym
annotated target: positive regulation of signalling process
数据库_交叉_引用: GOC:mah

Axiom
annotated source: positive regulation of signaling
annotated property: has_related_synonym
annotated target: positive regulation of signaling process
数据库_交叉_引用: GOC:bf

negative regulation of signaling
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: negatively regulates
    some values from: signaling
subclass of: regulation of signaling
subclass of: negative regulation of biological process
subclass of: Restriction
  on property: negatively regulates
  some values from: signaling
definition: Any process that stops, prevents, or reduces the frequency, rate or extent of a signaling process.
creation_date: 2010-02-16T09:30:50Z
有_obo_命名空间: biological_process
has_related_synonym: negative regulation of signaling process
has_related_synonym: negative regulation of signalling process
id: GO:0023057

Axiom
annotated source: negative regulation of signaling
annotated property: definition
annotated target: Any process that stops, prevents, or reduces the frequency, rate or extent of a signaling process.
数据库_交叉_引用: GOC:mtg_signal

Axiom
annotated source: negative regulation of signaling
annotated property: has_related_synonym
annotated target: negative regulation of signaling process
数据库_交叉_引用: GOC:bf

Axiom
annotated source: negative regulation of signaling
annotated property: has_related_synonym
annotated target: negative regulation of signalling process
数据库_交叉_引用: GOC:mah

receptor regulator activity
type: Class
subclass of: molecular function regulator
definition: The function of interacting (directly or indirectly) with receptors such that the proportion of receptors in the active form is changed.
数据库_交叉_引用: MIPS_funcat:18.02.07
有_obo_命名空间: molecular_function
id: GO:0030545

Axiom
annotated source: receptor regulator activity
annotated property: definition
annotated target: The function of interacting (directly or indirectly) with receptors such that the proportion of receptors in the active form is changed.
数据库_交叉_引用: GOC:ceb

signaling receptor activator activity
type: Class
subclass of: receptor regulator activity
definition: The function of interacting (directly or indirectly) with receptors such that the proportion of receptors in the active form is increased.
has_broad_synonym: receptor activator activity
有_obo_命名空间: molecular_function
id: GO:0030546

Axiom
annotated source: signaling receptor activator activity
annotated property: definition
annotated target: The function of interacting (directly or indirectly) with receptors such that the proportion of receptors in the active form is increased.
数据库_交叉_引用: GOC:ceb

regulation of cellular metabolic process
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: regulates
    some values from: cellular metabolic process
subclass of: regulation of metabolic process
subclass of: regulation of cellular process
subclass of: Restriction
  on property: regulates
  some values from: cellular metabolic process
definition: Any process that modulates the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances.
has_exact_synonym: regulation of cellular metabolism
有_obo_命名空间: biological_process
id: GO:0031323

Axiom
annotated source: regulation of cellular metabolic process
annotated property: definition
annotated target: Any process that modulates the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances.
数据库_交叉_引用: GOC:mah

negative regulation of cellular metabolic process
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: negatively regulates
    some values from: cellular metabolic process
subclass of: negative regulation of metabolic process
subclass of: regulation of cellular metabolic process
subclass of: negative regulation of cellular process
subclass of: Restriction
  on property: negatively regulates
  some values from: cellular metabolic process
definition: Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances.
has_exact_synonym: down regulation of cellular metabolic process
has_exact_synonym: down-regulation of cellular metabolic process
has_exact_synonym: downregulation of cellular metabolic process
has_exact_synonym: negative regulation of cellular metabolism
has_narrow_synonym: inhibition of cellular metabolic process
有_obo_命名空间: biological_process
id: GO:0031324

Axiom
annotated source: negative regulation of cellular metabolic process
annotated property: definition
annotated target: Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances.
数据库_交叉_引用: GOC:mah

positive regulation of cellular metabolic process
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: positively regulates
    some values from: cellular metabolic process
subclass of: positive regulation of metabolic process
subclass of: regulation of cellular metabolic process
subclass of: positive regulation of cellular process
subclass of: Restriction
  on property: positively regulates
  some values from: cellular metabolic process
definition: Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances.
has_exact_synonym: positive regulation of cellular metabolism
has_exact_synonym: up regulation of cellular metabolic process
has_exact_synonym: up-regulation of cellular metabolic process
has_exact_synonym: upregulation of cellular metabolic process
has_narrow_synonym: activation of cellular metabolic process
has_narrow_synonym: stimulation of cellular metabolic process
有_obo_命名空间: biological_process
id: GO:0031325

Axiom
annotated source: positive regulation of cellular metabolic process
annotated property: definition
annotated target: Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances.
数据库_交叉_引用: GOC:mah

negative regulation of protein binding
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: negatively regulates
    some values from: protein binding
subclass of: regulation of protein binding
subclass of: negative regulation of binding
subclass of: Restriction
  on property: negatively regulates
  some values from: protein binding
definition: Any process that stops, prevents, or reduces the frequency, rate or extent of protein binding.
has_exact_synonym: down regulation of protein binding
has_exact_synonym: down-regulation of protein binding
has_exact_synonym: downregulation of protein binding
has_narrow_synonym: inhibition of protein binding
有_obo_命名空间: biological_process
id: GO:0032091

Axiom
annotated source: negative regulation of protein binding
annotated property: definition
annotated target: Any process that stops, prevents, or reduces the frequency, rate or extent of protein binding.
数据库_交叉_引用: GOC:mah

positive regulation of protein binding
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: positively regulates
    some values from: protein binding
subclass of: regulation of protein binding
subclass of: positive regulation of binding
subclass of: Restriction
  on property: positively regulates
  some values from: protein binding
definition: Any process that activates or increases the frequency, rate or extent of protein binding.
has_exact_synonym: up regulation of protein binding
has_exact_synonym: up-regulation of protein binding
has_exact_synonym: upregulation of protein binding
has_narrow_synonym: activation of protein binding
has_narrow_synonym: stimulation of protein binding
有_obo_命名空间: biological_process
id: GO:0032092

Axiom
annotated source: positive regulation of protein binding
annotated property: definition
annotated target: Any process that activates or increases the frequency, rate or extent of protein binding.
数据库_交叉_引用: GOC:mah

regulation of localization
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: regulates
    some values from: localization
subclass of: regulation of biological process
subclass of: Restriction
  on property: regulates
  some values from: localization
definition: Any process that modulates the frequency, rate or extent of any process in which a cell, a substance, or a cellular entity is transported to, or maintained in, a specific location.
has_exact_synonym: regulation of localisation
有_obo_命名空间: biological_process
id: GO:0032879

Axiom
annotated source: regulation of localization
annotated property: definition
annotated target: Any process that modulates the frequency, rate or extent of any process in which a cell, a substance, or a cellular entity is transported to, or maintained in, a specific location.
数据库_交叉_引用: GOC:mah

Axiom
annotated source: regulation of localization
annotated property: has_exact_synonym
annotated target: regulation of localisation
数据库_交叉_引用: GOC:mah

negative regulation of kinase activity
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: negatively regulates
    some values from: kinase activity
subclass of: negative regulation of phosphorylation
subclass of: regulation of kinase activity
subclass of: negative regulation of transferase activity
subclass of: Restriction
  on property: negatively regulates
  some values from: kinase activity
definition: Any process that stops, prevents, or reduces the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
has_exact_synonym: down regulation of kinase activity
has_exact_synonym: down-regulation of kinase activity
has_exact_synonym: downregulation of kinase activity
has_narrow_synonym: inhibition of kinase activity
has_narrow_synonym: kinase inhibitor
有_obo_命名空间: biological_process
id: GO:0033673

Axiom
annotated source: negative regulation of kinase activity
annotated property: definition
annotated target: Any process that stops, prevents, or reduces the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
数据库_交叉_引用: GOC:mah

positive regulation of kinase activity
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: positively regulates
    some values from: kinase activity
subclass of: positive regulation of phosphorylation
subclass of: regulation of kinase activity
subclass of: positive regulation of transferase activity
subclass of: Restriction
  on property: positively regulates
  some values from: kinase activity
definition: Any process that activates or increases the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
has_exact_synonym: up regulation of kinase activity
has_exact_synonym: up-regulation of kinase activity
has_exact_synonym: upregulation of kinase activity
has_narrow_synonym: kinase activator
has_narrow_synonym: stimulation of kinase activity
有_obo_命名空间: biological_process
id: GO:0033674

Axiom
annotated source: positive regulation of kinase activity
annotated property: definition
annotated target: Any process that activates or increases the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
数据库_交叉_引用: GOC:mah

signaling receptor activity
type: Class
subclass of: molecular transducer activity
definition: Receiving a signal and transmitting it in the cell to initiate a change in cell activity. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response.
created_by: rfoulger
creation_date: 2011-08-01T02:45:27Z
has_alternative_id: GO:0004872
has_alternative_id: GO:0019041
has_broad_synonym: receptor activity
has_exact_synonym: receptor activity involved in signal transduction
有_obo_命名空间: molecular_function
id: GO:0038023
in_subset: goslim agr
in_subset: goslim chembl
in_subset: goslim flybase ribbon
in_subset: goslim metagenomics
in_subset: goslim mouse
in_subset: goslim pir
in_subset: goslim plant

Axiom
annotated source: signaling receptor activity
annotated property: definition
annotated target: Receiving a signal and transmitting it in the cell to initiate a change in cell activity. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response.
数据库_交叉_引用: GOC:bf
数据库_交叉_引用: GOC:signaling

Axiom
annotated source: signaling receptor activity
annotated property: has_exact_synonym
annotated target: receptor activity involved in signal transduction
数据库_交叉_引用: GOC:bf

regulation of phosphorylation
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: regulates
    some values from: phosphorylation
subclass of: regulation of phosphate metabolic process
subclass of: Restriction
  on property: regulates
  some values from: phosphorylation
definition: Any process that modulates the frequency, rate or extent of addition of phosphate groups into a molecule.
有_obo_命名空间: biological_process
id: GO:0042325

Axiom
annotated source: regulation of phosphorylation
annotated property: definition
annotated target: Any process that modulates the frequency, rate or extent of addition of phosphate groups into a molecule.
数据库_交叉_引用: GOC:jl

negative regulation of phosphorylation
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: negatively regulates
    some values from: phosphorylation
subclass of: regulation of phosphorylation
subclass of: negative regulation of phosphate metabolic process
subclass of: Restriction
  on property: negatively regulates
  some values from: phosphorylation
definition: Any process that stops, prevents or decreases the rate of addition of phosphate groups to a molecule.
has_exact_synonym: down regulation of phosphorylation
has_exact_synonym: down-regulation of phosphorylation
has_exact_synonym: downregulation of phosphorylation
has_narrow_synonym: inhibition of phosphorylation
有_obo_命名空间: biological_process
id: GO:0042326

Axiom
annotated source: negative regulation of phosphorylation
annotated property: definition
annotated target: Any process that stops, prevents or decreases the rate of addition of phosphate groups to a molecule.
数据库_交叉_引用: GOC:jl

positive regulation of phosphorylation
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: positively regulates
    some values from: phosphorylation
subclass of: regulation of phosphorylation
subclass of: positive regulation of phosphate metabolic process
subclass of: Restriction
  on property: positively regulates
  some values from: phosphorylation
definition: Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to a molecule.
has_exact_synonym: up regulation of phosphorylation
has_exact_synonym: up-regulation of phosphorylation
has_exact_synonym: upregulation of phosphorylation
has_narrow_synonym: activation of phosphorylation
has_narrow_synonym: stimulation of phosphorylation
有_obo_命名空间: biological_process
id: GO:0042327

Axiom
annotated source: positive regulation of phosphorylation
annotated property: definition
annotated target: Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to a molecule.
数据库_交叉_引用: GOC:jl

positive regulation of catalytic activity
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: positively regulates
    some values from: catalytic activity
subclass of: positive regulation of molecular function
subclass of: regulation of catalytic activity
subclass of: Restriction
  on property: positively regulates
  some values from: catalytic activity
definition: Any process that activates or increases the activity of an enzyme.
has_alternative_id: GO:0048554
数据库_交叉_引用: MIPS_funcat:18.02.01.01
has_exact_synonym: positive regulation of enzyme activity
has_exact_synonym: up regulation of enzyme activity
has_exact_synonym: up-regulation of enzyme activity
has_exact_synonym: upregulation of enzyme activity
has_narrow_synonym: activation of enzyme activity
has_narrow_synonym: activation of metalloenzyme activity
has_narrow_synonym: positive regulation of metalloenzyme activity
has_narrow_synonym: stimulation of enzyme activity
has_narrow_synonym: stimulation of metalloenzyme activity
has_narrow_synonym: up regulation of metalloenzyme activity
has_narrow_synonym: up-regulation of metalloenzyme activity
has_narrow_synonym: upregulation of metalloenzyme activity
有_obo_命名空间: biological_process
id: GO:0043085
in_subset: goslim chembl

Axiom
annotated source: positive regulation of catalytic activity
annotated property: definition
annotated target: Any process that activates or increases the activity of an enzyme.
数据库_交叉_引用: GOC:ebc
数据库_交叉_引用: GOC:jl
数据库_交叉_引用: GOC:tb
数据库_交叉_引用: GOC:vw

Axiom
annotated source: positive regulation of catalytic activity
annotated property: has_exact_synonym
annotated target: positive regulation of enzyme activity
数据库_交叉_引用: GOC:tb

negative regulation of catalytic activity
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: negatively regulates
    some values from: catalytic activity
subclass of: negative regulation of molecular function
subclass of: regulation of catalytic activity
subclass of: Restriction
  on property: negatively regulates
  some values from: catalytic activity
definition: Any process that stops or reduces the activity of an enzyme.
has_alternative_id: GO:0048553
has_exact_synonym: down regulation of enzyme activity
has_exact_synonym: down-regulation of enzyme activity
has_exact_synonym: down-regulation of metalloenzyme activity
has_exact_synonym: downregulation of enzyme activity
has_exact_synonym: negative regulation of enzyme activity
has_narrow_synonym: down regulation of metalloenzyme activity
has_narrow_synonym: downregulation of metalloenzyme activity
has_narrow_synonym: inhibition of enzyme activity
has_narrow_synonym: inhibition of metalloenzyme activity
has_narrow_synonym: negative regulation of metalloenzyme activity
有_obo_命名空间: biological_process
id: GO:0043086

Axiom
annotated source: negative regulation of catalytic activity
annotated property: definition
annotated target: Any process that stops or reduces the activity of an enzyme.
数据库_交叉_引用: GOC:ebc
数据库_交叉_引用: GOC:jl
数据库_交叉_引用: GOC:tb
数据库_交叉_引用: GOC:vw

Axiom
annotated source: negative regulation of catalytic activity
annotated property: has_exact_synonym
annotated target: negative regulation of enzyme activity
数据库_交叉_引用: GOC:tb

regulation of protein binding
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: regulates
    some values from: protein binding
subclass of: regulation of binding
subclass of: Restriction
  on property: regulates
  some values from: protein binding
definition: Any process that modulates the frequency, rate or extent of protein binding.
有_obo_命名空间: biological_process
id: GO:0043393

Axiom
annotated source: regulation of protein binding
annotated property: definition
annotated target: Any process that modulates the frequency, rate or extent of protein binding.
数据库_交叉_引用: GOC:go_curators

regulation of kinase activity
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: regulates
    some values from: kinase activity
subclass of: regulation of phosphorylation
subclass of: regulation of transferase activity
subclass of: Restriction
  on property: regulates
  some values from: kinase activity
definition: Any process that modulates the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
有_obo_命名空间: biological_process
id: GO:0043549

Axiom
annotated source: regulation of kinase activity
annotated property: definition
annotated target: Any process that modulates the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
数据库_交叉_引用: GOC:bf

regulation of multi-organism process
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: regulates
    some values from: multi-organism process
subclass of: regulation of biological process
subclass of: Restriction
  on property: regulates
  some values from: multi-organism process
definition: Any process that modulates the frequency, rate or extent of a multi-organism process, a process in which an organism has an effect on another organism of the same or different species.
有_obo_命名空间: biological_process
id: GO:0043900

Axiom
annotated source: regulation of multi-organism process
annotated property: definition
annotated target: Any process that modulates the frequency, rate or extent of a multi-organism process, a process in which an organism has an effect on another organism of the same or different species.
数据库_交叉_引用: GOC:jl

negative regulation of multi-organism process
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: negatively regulates
    some values from: multi-organism process
subclass of: regulation of multi-organism process
subclass of: negative regulation of biological process
subclass of: Restriction
  on property: negatively regulates
  some values from: multi-organism process
definition: Any process that stops, prevents, or reduces the frequency, rate or extent of a multi-organism process, a process in which an organism has an effect on another organism of the same or different species.
有_obo_命名空间: biological_process
id: GO:0043901

Axiom
annotated source: negative regulation of multi-organism process
annotated property: definition
annotated target: Any process that stops, prevents, or reduces the frequency, rate or extent of a multi-organism process, a process in which an organism has an effect on another organism of the same or different species.
数据库_交叉_引用: GOC:jl

positive regulation of multi-organism process
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: positively regulates
    some values from: multi-organism process
subclass of: regulation of multi-organism process
subclass of: positive regulation of biological process
subclass of: Restriction
  on property: positively regulates
  some values from: multi-organism process
definition: Any process that activates or increases the frequency, rate or extent of a multi-organism process, a process in which an organism has an effect on another organism of the same or different species.
有_obo_命名空间: biological_process
id: GO:0043902

Axiom
annotated source: positive regulation of multi-organism process
annotated property: definition
annotated target: Any process that activates or increases the frequency, rate or extent of a multi-organism process, a process in which an organism has an effect on another organism of the same or different species.
数据库_交叉_引用: GOC:jl

regulation of symbiosis, encompassing mutualism through parasitism
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: regulates
    some values from: symbiosis, encompassing mutualism through parasitism
subclass of: regulation of multi-organism process
subclass of: Restriction
  on property: regulates
  some values from: symbiosis, encompassing mutualism through parasitism
definition: Any process that modulates the frequency, rate or extent of symbiosis, an interaction between two organisms living together in more or less intimate association.
有_obo_命名空间: biological_process
id: GO:0043903

Axiom
annotated source: regulation of symbiosis, encompassing mutualism through parasitism
annotated property: definition
annotated target: Any process that modulates the frequency, rate or extent of symbiosis, an interaction between two organisms living together in more or less intimate association.
数据库_交叉_引用: GOC:jl

negative regulation of molecular function
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: negatively regulates
    some values from: GO:molecular_function
subclass of: regulation of molecular function
subclass of: Restriction
  on property: negatively regulates
  some values from: GO:molecular_function
definition: Any process that stops or reduces the rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding.
created_by: jane
creation_date: 2009-04-21T04:07:27Z
有_obo_命名空间: biological_process
id: GO:0044092

Axiom
annotated source: negative regulation of molecular function
annotated property: definition
annotated target: Any process that stops or reduces the rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding.
数据库_交叉_引用: GO:jl

positive regulation of molecular function
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: positively regulates
    some values from: GO:molecular_function
subclass of: regulation of molecular function
subclass of: Restriction
  on property: positively regulates
  some values from: GO:molecular_function
definition: Any process that activates or increases the rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding.
created_by: jane
creation_date: 2009-04-21T04:11:06Z
有_obo_命名空间: biological_process
id: GO:0044093

Axiom
annotated source: positive regulation of molecular function
annotated property: definition
annotated target: Any process that activates or increases the rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding.
数据库_交叉_引用: GO:jl

cellular metabolic process
type: Class
subclass of: metabolic process
subclass of: cellular process
definition: The chemical reactions and pathways by which individual cells transform chemical substances.
has_exact_synonym: cellular metabolism
有_obo_命名空间: biological_process
has_related_synonym: intermediary metabolism
id: GO:0044237

Axiom
annotated source: cellular metabolic process
annotated property: definition
annotated target: The chemical reactions and pathways by which individual cells transform chemical substances.
数据库_交叉_引用: GOC:go_curators

Axiom
annotated source: cellular metabolic process
annotated property: has_related_synonym
annotated target: intermediary metabolism
数据库_交叉_引用: GOC:mah

symbiosis, encompassing mutualism through parasitism
type: Class
subclass of: interspecies interaction between organisms
subclass of: Restriction
  on property: is symbiosis
  has self: true
definition: A process carried out by symbiont gene products that enables the interaction between two organisms living together in more or less intimate association. The various forms of symbiosis include parasitism, in which the association is disadvantageous or destructive to one of the organisms; mutualism, in which the association is advantageous, or often necessary to one or both and not harmful to either; and commensalism, in which one member of the association benefits while the other is not affected. However, mutualism, parasitism, and commensalism are often not discrete categories of interactions and should rather be perceived as a continuum of interaction ranging from parasitism to mutualism. In fact, the direction of a symbiotic interaction can change during the lifetime of the symbionts due to developmental changes as well as changes in the biotic/abiotic environment in which the interaction occurs. Microscopic symbionts are often referred to as endosymbionts.
has_alternative_id: GO:0043298
has_alternative_id: GO:0044404
has_alternative_id: GO:0072519
has_alternative_id: GO:0085031
has_narrow_synonym: commensalism
has_narrow_synonym: host-pathogen interaction
has_narrow_synonym: parasitism
有_obo_命名空间: biological_process
has_related_synonym: symbiosis
has_related_synonym: symbiosis, encompassing mutualism through parasitism
has_related_synonym: symbiotic interaction
has_related_synonym: symbiotic interaction between host and organism
has_related_synonym: symbiotic interaction between organisms
has_related_synonym: symbiotic interaction between species
id: GO:0044403
in_subset: goslim chembl
in_subset: goslim generic
comment: Changed term, definition see https://github.com/geneontology/go-ontology/issues/14807
label: symbiotic process

Axiom
annotated source: symbiosis, encompassing mutualism through parasitism
annotated property: definition
annotated target: A process carried out by symbiont gene products that enables the interaction between two organisms living together in more or less intimate association. The various forms of symbiosis include parasitism, in which the association is disadvantageous or destructive to one of the organisms; mutualism, in which the association is advantageous, or often necessary to one or both and not harmful to either; and commensalism, in which one member of the association benefits while the other is not affected. However, mutualism, parasitism, and commensalism are often not discrete categories of interactions and should rather be perceived as a continuum of interaction ranging from parasitism to mutualism. In fact, the direction of a symbiotic interaction can change during the lifetime of the symbionts due to developmental changes as well as changes in the biotic/abiotic environment in which the interaction occurs. Microscopic symbionts are often referred to as endosymbionts.
数据库_交叉_引用: GOC:cc
数据库_交叉_引用: https://study.com/academy/lesson/symbiont-definition-lesson-quiz.html

adhesion of symbiont to host
type: Class
subclass of: biological adhesion
subclass of: multi-organism process
subclass of: Restriction
  on property: part of
  some values from: symbiosis, encompassing mutualism through parasitism
definition: The attachment of a symbiont to its host via adhesion molecules, general stickiness etc., either directly or indirectly. The host is defined as the larger of the organisms involved in a symbiotic interaction.
has_alternative_id: GO:0051825
has_alternative_id: GO:0051856
has_exact_synonym: adhesion to other organism involved in symbiotic interaction
has_narrow_synonym: adhesion to host
has_narrow_synonym: adhesion to symbiont
has_narrow_synonym: host adhesion
有_obo_命名空间: biological_process
has_related_synonym: adhesion to other organism during symbiotic interaction
id: GO:0044406
comment: This term can be used to annotate both symbiont and host organisms. Consider also annotating to interaction with host ; GO:0051702, or interaction with symbiont ; GO:0051702.

Axiom
annotated source: adhesion of symbiont to host
annotated property: definition
annotated target: The attachment of a symbiont to its host via adhesion molecules, general stickiness etc., either directly or indirectly. The host is defined as the larger of the organisms involved in a symbiotic interaction.
数据库_交叉_引用: GOC:bf
数据库_交叉_引用: GOC:cc
数据库_交叉_引用: GOC:dos
数据库_交叉_引用: GOC:jl

Axiom
annotated source: adhesion of symbiont to host
annotated property: has_related_synonym
annotated target: adhesion to other organism during symbiotic interaction
数据库_交叉_引用: GOC:dph

interspecies interaction between organisms
type: Class
subclass of: multi-organism process
definition: Any process in which an organism has an effect on an organism of a different species.
has_exact_synonym: interaction with another species
has_exact_synonym: interspecies interaction
has_exact_synonym: interspecies interaction with other organisms
有_obo_命名空间: biological_process
id: GO:0044419
in_subset: goslim candida
in_subset: goslim pir

Axiom
annotated source: interspecies interaction between organisms
annotated property: definition
annotated target: Any process in which an organism has an effect on an organism of a different species.
数据库_交叉_引用: GOC:cc

negative regulation of phosphate metabolic process
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: negatively regulates
    some values from: phosphate-containing compound metabolic process
subclass of: negative regulation of phosphorus metabolic process
subclass of: regulation of phosphate metabolic process
subclass of: Restriction
  on property: negatively regulates
  some values from: phosphate-containing compound metabolic process
definition: Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving phosphates.
has_exact_synonym: down regulation of phosphate metabolic process
has_exact_synonym: down-regulation of phosphate metabolic process
has_exact_synonym: downregulation of phosphate metabolic process
has_exact_synonym: negative regulation of phosphate metabolism
has_narrow_synonym: inhibition of phosphate metabolic process
有_obo_命名空间: biological_process
id: GO:0045936

Axiom
annotated source: negative regulation of phosphate metabolic process
annotated property: definition
annotated target: Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving phosphates.
数据库_交叉_引用: GOC:go_curators

positive regulation of phosphate metabolic process
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: positively regulates
    some values from: phosphate-containing compound metabolic process
subclass of: positive regulation of phosphorus metabolic process
subclass of: regulation of phosphate metabolic process
subclass of: Restriction
  on property: positively regulates
  some values from: phosphate-containing compound metabolic process
definition: Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving phosphates.
has_exact_synonym: positive regulation of phosphate metabolism
has_exact_synonym: up regulation of phosphate metabolic process
has_exact_synonym: up-regulation of phosphate metabolic process
has_exact_synonym: upregulation of phosphate metabolic process
has_narrow_synonym: activation of phosphate metabolic process
has_narrow_synonym: stimulation of phosphate metabolic process
有_obo_命名空间: biological_process
id: GO:0045937

Axiom
annotated source: positive regulation of phosphate metabolic process
annotated property: definition
annotated target: Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving phosphates.
数据库_交叉_引用: GOC:go_curators

receptor ligand activity
type: Class
subclass of: signaling receptor binding
subclass of: signaling receptor activator activity
subclass of: Restriction
  on property: part of
  some values from: signal transduction
definition: The activity of a gene product that interacts with a receptor to effect a change in the activity of the receptor. Ligands may be produced by the same, or different, cell that expresses the receptor. Ligands may diffuse extracellularly from their point of origin to the receiving cell, or remain attached to an adjacent cell surface (e.g. Notch ligands).
created_by: midori
creation_date: 2010-09-13T04:51:59Z
has_alternative_id: GO:0071884
has_broad_synonym: receptor agonist activity
has_exact_synonym: signaling molecule
has_exact_synonym: signaling receptor ligand activity
has_narrow_synonym: vitamin D receptor activator activity
有_obo_命名空间: molecular_function
id: GO:0048018
in_subset: goslim chembl
comment: Definition discussed in https://github.com/geneontology/go-ontology/issues/14220

Axiom
annotated source: receptor ligand activity
annotated property: definition
annotated target: The activity of a gene product that interacts with a receptor to effect a change in the activity of the receptor. Ligands may be produced by the same, or different, cell that expresses the receptor. Ligands may diffuse extracellularly from their point of origin to the receiving cell, or remain attached to an adjacent cell surface (e.g. Notch ligands).
数据库_交叉_引用: GOC:kv
数据库_交叉_引用: GOC:molecular_function_refactoring
数据库_交叉_引用: GOC:pdt

Axiom
annotated source: receptor ligand activity
annotated property: has_broad_synonym
annotated target: receptor agonist activity
数据库_交叉_引用: GOC:molecular_function_refactoring

positive regulation of biological process
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: positively regulates
    some values from: biological_process
subclass of: regulation of biological process
subclass of: Restriction
  on property: positively regulates
  some values from: biological_process
definition: Any process that activates or increases the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule.
has_alternative_id: GO:0043119
has_exact_synonym: positive regulation of physiological process
has_exact_synonym: up regulation of biological process
has_exact_synonym: up-regulation of biological process
has_exact_synonym: upregulation of biological process
has_narrow_synonym: activation of biological process
has_narrow_synonym: stimulation of biological process
有_obo_命名空间: biological_process
id: GO:0048518
in_subset: gocheck do not annotate

Axiom
annotated source: positive regulation of biological process
annotated property: definition
annotated target: Any process that activates or increases the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule.
数据库_交叉_引用: GOC:jid

negative regulation of biological process
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: negatively regulates
    some values from: biological_process
subclass of: regulation of biological process
subclass of: Restriction
  on property: negatively regulates
  some values from: biological_process
definition: Any process that stops, prevents, or reduces the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule.
has_alternative_id: GO:0043118
has_exact_synonym: down regulation of biological process
has_exact_synonym: down-regulation of biological process
has_exact_synonym: downregulation of biological process
has_exact_synonym: negative regulation of physiological process
has_narrow_synonym: inhibition of biological process
有_obo_命名空间: biological_process
id: GO:0048519
in_subset: gocheck do not annotate

Axiom
annotated source: negative regulation of biological process
annotated property: definition
annotated target: Any process that stops, prevents, or reduces the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule.
数据库_交叉_引用: GOC:jid

positive regulation of cellular process
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: positively regulates
    some values from: cellular process
subclass of: positive regulation of biological process
subclass of: regulation of cellular process
subclass of: Restriction
  on property: positively regulates
  some values from: cellular process
definition: Any process that activates or increases the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
has_alternative_id: GO:0051242
has_exact_synonym: positive regulation of cellular physiological process
has_exact_synonym: up regulation of cellular process
has_exact_synonym: up-regulation of cellular process
has_exact_synonym: upregulation of cellular process
has_narrow_synonym: activation of cellular process
has_narrow_synonym: stimulation of cellular process
有_obo_命名空间: biological_process
id: GO:0048522

Axiom
annotated source: positive regulation of cellular process
annotated property: definition
annotated target: Any process that activates or increases the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
数据库_交叉_引用: GOC:jid

negative regulation of cellular process
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: negatively regulates
    some values from: cellular process
subclass of: negative regulation of biological process
subclass of: regulation of cellular process
subclass of: Restriction
  on property: negatively regulates
  some values from: cellular process
definition: Any process that stops, prevents, or reduces the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
has_alternative_id: GO:0051243
has_exact_synonym: down regulation of cellular process
has_exact_synonym: down-regulation of cellular process
has_exact_synonym: downregulation of cellular process
has_exact_synonym: negative regulation of cellular physiological process
has_narrow_synonym: inhibition of cellular process
有_obo_命名空间: biological_process
id: GO:0048523

Axiom
annotated source: negative regulation of cellular process
annotated property: definition
annotated target: Any process that stops, prevents, or reduces the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
数据库_交叉_引用: GOC:jid

regulation of response to stimulus
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: regulates
    some values from: response to stimulus
subclass of: regulation of biological process
subclass of: Restriction
  on property: regulates
  some values from: response to stimulus
definition: Any process that modulates the frequency, rate or extent of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus.
有_obo_命名空间: biological_process
id: GO:0048583
in_subset: gocheck do not manually annotate
comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.

Axiom
annotated source: regulation of response to stimulus
annotated property: definition
annotated target: Any process that modulates the frequency, rate or extent of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus.
数据库_交叉_引用: GOC:jid

positive regulation of response to stimulus
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: positively regulates
    some values from: response to stimulus
subclass of: positive regulation of biological process
subclass of: regulation of response to stimulus
subclass of: Restriction
  on property: positively regulates
  some values from: response to stimulus
definition: Any process that activates, maintains or increases the rate of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus.
has_exact_synonym: up regulation of response to stimulus
has_exact_synonym: up-regulation of response to stimulus
has_exact_synonym: upregulation of response to stimulus
has_narrow_synonym: activation of response to stimulus
has_narrow_synonym: stimulation of response to stimulus
有_obo_命名空间: biological_process
id: GO:0048584
in_subset: gocheck do not manually annotate
comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.

Axiom
annotated source: positive regulation of response to stimulus
annotated property: definition
annotated target: Any process that activates, maintains or increases the rate of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus.
数据库_交叉_引用: GOC:jid

negative regulation of response to stimulus
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: negatively regulates
    some values from: response to stimulus
subclass of: negative regulation of biological process
subclass of: regulation of response to stimulus
subclass of: Restriction
  on property: negatively regulates
  some values from: response to stimulus
definition: Any process that stops, prevents, or reduces the frequency, rate or extent of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus.
has_exact_synonym: down regulation of response to stimulus
has_exact_synonym: down-regulation of response to stimulus
has_exact_synonym: downregulation of response to stimulus
has_narrow_synonym: inhibition of response to stimulus
有_obo_命名空间: biological_process
id: GO:0048585
in_subset: gocheck do not manually annotate
comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.

Axiom
annotated source: negative regulation of response to stimulus
annotated property: definition
annotated target: Any process that stops, prevents, or reduces the frequency, rate or extent of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus.
数据库_交叉_引用: GOC:jid

regulation of immune response
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: regulates
    some values from: immune response
subclass of: regulation of immune system process
subclass of: regulation of response to stimulus
subclass of: Restriction
  on property: regulates
  some values from: immune response
definition: Any process that modulates the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus.
有_obo_命名空间: biological_process
id: GO:0050776

Axiom
annotated source: regulation of immune response
annotated property: definition
annotated target: Any process that modulates the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus.
数据库_交叉_引用: GOC:ai

negative regulation of immune response
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: negatively regulates
    some values from: immune response
subclass of: negative regulation of immune system process
subclass of: negative regulation of response to stimulus
subclass of: regulation of immune response
subclass of: Restriction
  on property: negatively regulates
  some values from: immune response
definition: Any process that stops, prevents, or reduces the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus.
has_exact_synonym: down regulation of immune response
has_exact_synonym: down-regulation of immune response
has_exact_synonym: downregulation of immune response
has_narrow_synonym: inhibition of immune response
有_obo_命名空间: biological_process
id: GO:0050777

Axiom
annotated source: negative regulation of immune response
annotated property: definition
annotated target: Any process that stops, prevents, or reduces the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus.
数据库_交叉_引用: GOC:ai

positive regulation of immune response
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: positively regulates
    some values from: immune response
subclass of: positive regulation of immune system process
subclass of: positive regulation of response to stimulus
subclass of: regulation of immune response
subclass of: Restriction
  on property: positively regulates
  some values from: immune response
definition: Any process that activates or increases the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus.
has_exact_synonym: up regulation of immune response
has_exact_synonym: up-regulation of immune response
has_exact_synonym: upregulation of immune response
has_narrow_synonym: stimulation of immune response
有_obo_命名空间: biological_process
id: GO:0050778

Axiom
annotated source: positive regulation of immune response
annotated property: definition
annotated target: Any process that activates or increases the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus.
数据库_交叉_引用: GOC:ai

regulation of biological process
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: regulates
    some values from: biological_process
subclass of: biological regulation
subclass of: Restriction
  on property: regulates
  some values from: biological_process
definition: Any process that modulates the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule.
has_alternative_id: GO:0050791
has_exact_synonym: regulation of physiological process
有_obo_命名空间: biological_process
id: GO:0050789
in_subset: gocheck do not annotate
in_subset: goslim agr
in_subset: goslim aspergillus
in_subset: goslim candida
in_subset: goslim pir

Axiom
annotated source: regulation of biological process
annotated property: definition
annotated target: Any process that modulates the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule.
数据库_交叉_引用: GOC:ai
数据库_交叉_引用: GOC:go_curators

regulation of catalytic activity
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: regulates
    some values from: catalytic activity
subclass of: regulation of molecular function
subclass of: Restriction
  on property: regulates
  some values from: catalytic activity
definition: Any process that modulates the activity of an enzyme.
has_alternative_id: GO:0048552
数据库_交叉_引用: MIPS_funcat:18.02.01
has_exact_synonym: regulation of enzyme activity
has_narrow_synonym: regulation of metalloenzyme activity
有_obo_命名空间: biological_process
id: GO:0050790
in_subset: goslim chembl

Axiom
annotated source: regulation of catalytic activity
annotated property: definition
annotated target: Any process that modulates the activity of an enzyme.
数据库_交叉_引用: GOC:ai
数据库_交叉_引用: GOC:ebc
数据库_交叉_引用: GOC:vw

regulation of cellular process
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: regulates
    some values from: cellular process
subclass of: regulation of biological process
subclass of: Restriction
  on property: regulates
  some values from: cellular process
definition: Any process that modulates the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
has_alternative_id: GO:0051244
has_exact_synonym: regulation of cellular physiological process
有_obo_命名空间: biological_process
id: GO:0050794

Axiom
annotated source: regulation of cellular process
annotated property: definition
annotated target: Any process that modulates the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
数据库_交叉_引用: GOC:go_curators

response to stimulus
type: Class
subclass of: biological_process
editor preferred label: response to stimulus
definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism.
imported from: go.owl
has_alternative_id: GO:0051869
数据库_交叉_引用: MIPS_funcat:34.11
has_exact_synonym: physiological response to stimulus
有_obo_命名空间: biological_process
id: GO:0050896
in_subset: gocheck do not manually annotate
in_subset: goslim agr
in_subset: goslim flybase ribbon
in_subset: goslim mouse
in_subset: goslim pir
comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.

Axiom
annotated source: response to stimulus
annotated property: definition
annotated target: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism.
数据库_交叉_引用: GOC:ai
数据库_交叉_引用: GOC:bf

regulation of binding
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: regulates
    some values from: binding
subclass of: regulation of molecular function
subclass of: Restriction
  on property: regulates
  some values from: binding
definition: Any process that modulates the frequency, rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule.
有_obo_命名空间: biological_process
id: GO:0051098

Axiom
annotated source: regulation of binding
annotated property: definition
annotated target: Any process that modulates the frequency, rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule.
数据库_交叉_引用: GOC:ai

positive regulation of binding
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: positively regulates
    some values from: binding
subclass of: positive regulation of molecular function
subclass of: regulation of binding
subclass of: Restriction
  on property: positively regulates
  some values from: binding
definition: Any process that activates or increases the rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule.
has_exact_synonym: up regulation of binding
has_exact_synonym: up-regulation of binding
has_exact_synonym: upregulation of binding
has_narrow_synonym: activation of binding
has_narrow_synonym: stimulation of binding
有_obo_命名空间: biological_process
id: GO:0051099

Axiom
annotated source: positive regulation of binding
annotated property: definition
annotated target: Any process that activates or increases the rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule.
数据库_交叉_引用: GOC:ai

negative regulation of binding
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: negatively regulates
    some values from: binding
subclass of: negative regulation of molecular function
subclass of: regulation of binding
subclass of: Restriction
  on property: negatively regulates
  some values from: binding
definition: Any process that stops or reduces the rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule.
has_exact_synonym: down regulation of binding
has_exact_synonym: down-regulation of binding
has_exact_synonym: downregulation of binding
has_narrow_synonym: inhibition of binding
有_obo_命名空间: biological_process
id: GO:0051100

Axiom
annotated source: negative regulation of binding
annotated property: definition
annotated target: Any process that stops or reduces the rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule.
数据库_交叉_引用: GOC:ai

regulation of phosphorus metabolic process
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: regulates
    some values from: phosphorus metabolic process
subclass of: regulation of cellular metabolic process
subclass of: Restriction
  on property: regulates
  some values from: phosphorus metabolic process
definition: Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus.
has_exact_synonym: regulation of phosphorus metabolism
有_obo_命名空间: biological_process
id: GO:0051174

Axiom
annotated source: regulation of phosphorus metabolic process
annotated property: definition
annotated target: Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus.
数据库_交叉_引用: GOC:ai

localization
type: Class
subclass of: biological_process
definition: Any process in which a cell, a substance, or a cellular entity, such as a protein complex or organelle, is transported, tethered to or otherwise maintained in a specific location. In the case of substances, localization may also be achieved via selective degradation.
created_by: jl
creation_date: 2013-12-18T13:51:04Z
has_alternative_id: GO:1902578
has_exact_synonym: establishment and maintenance of localization
has_exact_synonym: establishment and maintenance of position
has_exact_synonym: localisation
has_narrow_synonym: establishment and maintenance of cellular component location
has_narrow_synonym: establishment and maintenance of substance location
has_narrow_synonym: establishment and maintenance of substrate location
有_obo_命名空间: biological_process
has_related_synonym: single organism localization
has_related_synonym: single-organism localization
id: GO:0051179
in_subset: goslim pir

Axiom
annotated source: localization
annotated property: definition
annotated target: Any process in which a cell, a substance, or a cellular entity, such as a protein complex or organelle, is transported, tethered to or otherwise maintained in a specific location. In the case of substances, localization may also be achieved via selective degradation.
数据库_交叉_引用: GOC:ai
数据库_交叉_引用: GOC:dos

Axiom
annotated source: localization
annotated property: has_exact_synonym
annotated target: localisation
数据库_交叉_引用: GOC:mah

Axiom
annotated source: localization
annotated property: has_related_synonym
annotated target: single organism localization
数据库_交叉_引用: GOC:TermGenie

establishment of localization
type: Class
subclass of: localization
definition: Any process that localizes a substance or cellular component. This may occur via movement, tethering or selective degradation.
imported from: go.owl
imported from: ido.owl
imported from: Gene Ontology: http://purl.obolibrary.org/obo/go.owl
has_exact_synonym: establishment of localisation
有_obo_命名空间: biological_process
id: GO:0051234
in_subset: goslim agr
in_subset: goslim flybase ribbon
in_subset: goslim mouse
in_subset: goslim pir

Axiom
annotated source: establishment of localization
annotated property: definition
annotated target: Any process that localizes a substance or cellular component. This may occur via movement, tethering or selective degradation.
数据库_交叉_引用: GOC:ai
数据库_交叉_引用: GOC:dos

Axiom
annotated source: establishment of localization
annotated property: has_exact_synonym
annotated target: establishment of localisation
数据库_交叉_引用: GOC:mah

regulation of transferase activity
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: regulates
    some values from: transferase activity
subclass of: regulation of catalytic activity
subclass of: Restriction
  on property: regulates
  some values from: transferase activity
definition: Any process that modulates the frequency, rate or extent of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
has_exact_synonym: transferase regulator
有_obo_命名空间: biological_process
id: GO:0051338
in_subset: gocheck do not manually annotate
comment: This term is useful for grouping, but is too general for manual annotation. Please use a child term instead.

Axiom
annotated source: regulation of transferase activity
annotated property: definition
annotated target: Any process that modulates the frequency, rate or extent of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
数据库_交叉_引用: EC:2.-.-.-
数据库_交叉_引用: GOC:ai

positive regulation of transferase activity
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: positively regulates
    some values from: transferase activity
subclass of: positive regulation of catalytic activity
subclass of: regulation of transferase activity
subclass of: Restriction
  on property: positively regulates
  some values from: transferase activity
definition: Any process that activates or increases the frequency, rate or extent of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from a donor compound to an acceptor.
has_exact_synonym: transferase activator
has_exact_synonym: up regulation of transferase activity
has_exact_synonym: up-regulation of transferase activity
has_exact_synonym: upregulation of transferase activity
has_narrow_synonym: activation of transferase activity
has_narrow_synonym: stimulation of transferase activity
有_obo_命名空间: biological_process
id: GO:0051347
in_subset: gocheck do not manually annotate
comment: This term is useful for grouping, but is too general for manual annotation. Please use a child term instead.

Axiom
annotated source: positive regulation of transferase activity
annotated property: definition
annotated target: Any process that activates or increases the frequency, rate or extent of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from a donor compound to an acceptor.
数据库_交叉_引用: GOC:ai

negative regulation of transferase activity
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: negatively regulates
    some values from: transferase activity
subclass of: negative regulation of catalytic activity
subclass of: regulation of transferase activity
subclass of: Restriction
  on property: negatively regulates
  some values from: transferase activity
definition: Any process that stops or reduces the rate of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from a donor compound to an acceptor.
has_exact_synonym: down regulation of transferase activity
has_exact_synonym: down-regulation of transferase activity
has_exact_synonym: downregulation of transferase activity
has_exact_synonym: transferase inhibitor
has_narrow_synonym: inhibition of transferase activity
有_obo_命名空间: biological_process
id: GO:0051348
in_subset: gocheck do not manually annotate
comment: This term is useful for grouping, but is too general for manual annotation. Please use a child term instead.

Axiom
annotated source: negative regulation of transferase activity
annotated property: definition
annotated target: Any process that stops or reduces the rate of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from a donor compound to an acceptor.
数据库_交叉_引用: GOC:ai

multi-organism process
type: Class
subclass of: biological_process
definition: A biological process which involves another organism of the same or different species.
has_alternative_id: GO:0051706
has_exact_synonym: interaction between organisms
has_exact_synonym: physiological interaction between organisms
has_exact_synonym: physiological interaction with other organism
有_obo_命名空间: biological_process
id: GO:0051704
in_subset: gocheck do not annotate
in_subset: goslim pir

Axiom
annotated source: multi-organism process
annotated property: definition
annotated target: A biological process which involves another organism of the same or different species.
数据库_交叉_引用: GOC:jl

cellular response to stimulus
type: Class
subclass of: cellular process
subclass of: response to stimulus
definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus by a cell and ends with a change in state or activity or the cell.
有_obo_命名空间: biological_process
id: GO:0051716
in_subset: gocheck do not manually annotate
comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.

Axiom
annotated source: cellular response to stimulus
annotated property: definition
annotated target: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus by a cell and ends with a change in state or activity or the cell.
数据库_交叉_引用: GOC:bf
数据库_交叉_引用: GOC:jl

molecular transducer activity
type: Class
subclass of: GO:molecular_function
definition: A compound molecular function in which an effector function is controlled by one or more regulatory components.
有_obo_命名空间: molecular_function
id: GO:0060089
in_subset: gocheck do not manually annotate
in_subset: goslim pir

Axiom
annotated source: molecular transducer activity
annotated property: definition
annotated target: A compound molecular function in which an effector function is controlled by one or more regulatory components.
数据库_交叉_引用: GOC:dos
数据库_交叉_引用: GOC:pdt

biological regulation
type: Class
subclass of: biological_process
definition: Any process that modulates a measurable attribute of any biological process, quality or function.
has_broad_synonym: regulation
有_obo_命名空间: biological_process
id: GO:0065007
in_subset: gocheck do not annotate
in_subset: goslim pir

Axiom
annotated source: biological regulation
annotated property: definition
annotated target: Any process that modulates a measurable attribute of any biological process, quality or function.
数据库_交叉_引用: GOC:dph
数据库_交叉_引用: GOC:isa_complete
数据库_交叉_引用: GOC:mah
数据库_交叉_引用: GOC:pr
数据库_交叉_引用: GOC:vw

regulation of molecular function
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: regulates
    some values from: GO:molecular_function
subclass of: biological regulation
subclass of: Restriction
  on property: regulates
  some values from: GO:molecular_function
definition: Any process that modulates the frequency, rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding.
has_exact_synonym: regulation of a molecular function
有_obo_命名空间: biological_process
id: GO:0065009
in_subset: gocheck do not annotate
in_subset: goslim agr
in_subset: goslim pir
in_subset: goslim plant

Axiom
annotated source: regulation of molecular function
annotated property: definition
annotated target: Any process that modulates the frequency, rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding.
数据库_交叉_引用: GOC:isa_complete

molecular function regulator
type: Class
subclass of: GO:molecular_function
subclass of: Restriction
  on property: part of
  some values from: regulation of molecular function
definition: A molecular function that modulates the activity of a gene product or complex. Examples include enzyme regulators and channel regulators.
有_obo_命名空间: molecular_function
id: GO:0098772
in_subset: goslim flybase ribbon

Axiom
annotated source: molecular function regulator
annotated property: definition
annotated target: A molecular function that modulates the activity of a gene product or complex. Examples include enzyme regulators and channel regulators.
数据库_交叉_引用: GOC:dos
数据库_交叉_引用: GOC:pt

regulation of receptor binding
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: regulates
    some values from: signaling receptor binding
subclass of: regulation of protein binding
subclass of: Restriction
  on property: regulates
  some values from: signaling receptor binding
definition: Any process that modulates the frequency, rate or extent of a protein or other molecule binding to a receptor.
created_by: bf
creation_date: 2012-02-22T11:40:53Z
has_narrow_synonym: regulation of receptor ligand
有_obo_命名空间: biological_process
id: GO:1900120

Axiom
annotated source: regulation of receptor binding
annotated property: definition
annotated target: Any process that modulates the frequency, rate or extent of a protein or other molecule binding to a receptor.
数据库_交叉_引用: GOC:TermGenie
数据库_交叉_引用: GOC:signaling

Axiom
annotated source: regulation of receptor binding
annotated property: has_narrow_synonym
annotated target: regulation of receptor ligand
数据库_交叉_引用: GOC:TermGenie

negative regulation of receptor binding
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: negatively regulates
    some values from: signaling receptor binding
subclass of: negative regulation of protein binding
subclass of: regulation of receptor binding
subclass of: Restriction
  on property: negatively regulates
  some values from: signaling receptor binding
definition: Any process that stops, prevents or reduces the frequency, rate or extent of a protein or other molecule binding to a receptor.
created_by: bf
creation_date: 2012-02-22T11:40:57Z
has_exact_synonym: down regulation of receptor binding
has_exact_synonym: down-regulation of receptor binding
has_exact_synonym: downregulation of receptor binding
has_narrow_synonym: inhibition of receptor binding
has_narrow_synonym: inhibition of receptor ligand
有_obo_命名空间: biological_process
has_related_synonym: down regulation of receptor-associated protein activity
id: GO:1900121

Axiom
annotated source: negative regulation of receptor binding
annotated property: definition
annotated target: Any process that stops, prevents or reduces the frequency, rate or extent of a protein or other molecule binding to a receptor.
数据库_交叉_引用: GOC:TermGenie
数据库_交叉_引用: GOC:signaling

Axiom
annotated source: negative regulation of receptor binding
annotated property: has_exact_synonym
annotated target: down regulation of receptor binding
数据库_交叉_引用: GOC:TermGenie

Axiom
annotated source: negative regulation of receptor binding
annotated property: has_exact_synonym
annotated target: down-regulation of receptor binding
数据库_交叉_引用: GOC:TermGenie

Axiom
annotated source: negative regulation of receptor binding
annotated property: has_exact_synonym
annotated target: downregulation of receptor binding
数据库_交叉_引用: GOC:TermGenie

Axiom
annotated source: negative regulation of receptor binding
annotated property: has_narrow_synonym
annotated target: inhibition of receptor binding
数据库_交叉_引用: GOC:TermGenie

Axiom
annotated source: negative regulation of receptor binding
annotated property: has_narrow_synonym
annotated target: inhibition of receptor ligand
数据库_交叉_引用: GOC:TermGenie

Axiom
annotated source: negative regulation of receptor binding
annotated property: has_related_synonym
annotated target: down regulation of receptor-associated protein activity
数据库_交叉_引用: GOC:TermGenie

positive regulation of receptor binding
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: positively regulates
    some values from: signaling receptor binding
subclass of: positive regulation of protein binding
subclass of: regulation of receptor binding
subclass of: Restriction
  on property: positively regulates
  some values from: signaling receptor binding
definition: Any process that activates or increases the frequency, rate or extent of a protein or other molecule binding to a receptor.
created_by: bf
creation_date: 2012-02-22T11:41:00Z
has_exact_synonym: up regulation of receptor binding
has_exact_synonym: upregulation of receptor binding
has_narrow_synonym: activation of receptor binding
有_obo_命名空间: biological_process
id: GO:1900122

Axiom
annotated source: positive regulation of receptor binding
annotated property: definition
annotated target: Any process that activates or increases the frequency, rate or extent of a protein or other molecule binding to a receptor.
数据库_交叉_引用: GOC:TermGenie
数据库_交叉_引用: GOC:signaling

Axiom
annotated source: positive regulation of receptor binding
annotated property: has_exact_synonym
annotated target: up regulation of receptor binding
数据库_交叉_引用: GOC:TermGenie

Axiom
annotated source: positive regulation of receptor binding
annotated property: has_exact_synonym
annotated target: upregulation of receptor binding
数据库_交叉_引用: GOC:TermGenie

Axiom
annotated source: positive regulation of receptor binding
annotated property: has_narrow_synonym
annotated target: activation of receptor binding
数据库_交叉_引用: GOC:TermGenie

negative regulation of signaling receptor activity
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: negatively regulates
    some values from: signaling receptor activity
subclass of: regulation of signaling receptor activity
subclass of: negative regulation of molecular function
subclass of: Restriction
  on property: negatively regulates
  some values from: signaling receptor activity
definition: Any process that stops, prevents or reduces the frequency, rate or extent of a signaling receptor activity.
created_by: rfoulger
creation_date: 2010-12-02T09:28:47Z
has_broad_synonym: negative regulation of receptor activity
有_obo_命名空间: biological_process
id: GO:2000272

Axiom
annotated source: negative regulation of signaling receptor activity
annotated property: definition
annotated target: Any process that stops, prevents or reduces the frequency, rate or extent of a signaling receptor activity.
数据库_交叉_引用: GOC:obol

positive regulation of signaling receptor activity
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: positively regulates
    some values from: signaling receptor activity
subclass of: regulation of signaling receptor activity
subclass of: positive regulation of molecular function
subclass of: Restriction
  on property: positively regulates
  some values from: signaling receptor activity
definition: Any process that activates or increases the frequency, rate or extent of signaling receptor activity.
created_by: rfoulger
creation_date: 2010-12-02T09:28:50Z
有_obo_命名空间: biological_process
id: GO:2000273

Axiom
annotated source: positive regulation of signaling receptor activity
annotated property: definition
annotated target: Any process that activates or increases the frequency, rate or extent of signaling receptor activity.
数据库_交叉_引用: GOC:obol

measurement unit label
type: Class
subclass of: datum label
editor preferred label: measurement unit label
example of usage: Examples of measurement unit labels are liters, inches, weight per volume.
has curation status: IAO_0000125
definition: A measurement unit label is as a label that is part of a scalar measurement datum and denotes a unit of measure.
editor note: 2009-03-16: provenance: a term measurement unit was proposed for OBI (OBI_0000176) , edited by Chris Stoeckert and Cristian Cocos, and subsequently moved to IAO where the objective for which the original term was defined was satisfied with the definition of this, different, term.
editor note: 2009-03-16: review of this term done during during the OBI workshop winter 2009 and the current definition was considered acceptable for use in OBI. If there is a need to modify this definition please notify OBI.
definition editor: PERSON: Alan Ruttenberg
definition editor: PERSON: Melanie Courtot

objective specification
type: Class
subclass of: directive information content entity
editor preferred label: objective specification
example of usage: In the protocol of a ChIP assay the objective specification says to identify protein and DNA interaction.
has curation status: IAO_0000122
has curation status: IAO_0000125
definition: a directive information entity that describes an intended process endpoint. When part of a plan specification the concretization is realized in a planned process in which the bearer tries to effect the world so that the process endpoint is achieved.
editor note: 2009-03-16: original definition when imported from OBI read: "objective is an non realizable information entity which can serve as that proper part of a plan towards which the realization of the plan is directed."
editor note: 2014-03-31: In the example of usage ("In the protocol of a ChIP assay the objective specification says to identify protein and DNA interaction") there is a protocol which is the ChIP assay protocol. In addition to being concretized on paper, the protocol can be concretized as a realizable entity, such as a plan that inheres in a person. The objective specification is the part that says that some protein and DNA interactions are identified. This is a specification of a process endpoint: the boundary in the process before which they are not identified and after which they are. During the realization of the plan, the goal is to get to the point of having the interactions, and participants in the realization of the plan try to do that.
editor note: Answers the question, why did you do this experiment?
definition editor: PERSON: Alan Ruttenberg
definition editor: PERSON: Barry Smith
definition editor: PERSON: Bjoern Peters
definition editor: PERSON: Jennifer Fostel
alternative term: goal specification
definition source: OBI Plan and Planned Process/Roles Branch
definition source: OBI_0000217
imported from: obi.owl
imported from: vo.owl

action specification
type: Class
subclass of: directive information content entity
example of usage: Pour the contents of flask 1 into flask 2
has curation status: IAO_0000122
definition: a directive information entity that describes an action the bearer will take
definition editor: Alan Ruttenberg
definition source: OBI Plan and Planned Process branch

datum label
type: Class
subclass of: information content entity
editor preferred label: datum label
has curation status: IAO_0000123
definition: A label is a symbol that is part of some other datum and is used to either partially define the denotation of that datum or to provide a means for identifying the datum as a member of the set of data with the same label
editor note: http://www.golovchenko.org/cgi-bin/wnsearch#4n
definition editor: GROUP: IAO
curator note: 9/22/11 BP: changed the rdfs:label for this class from 'label' to 'datum label' to convey that this class is not intended to cover all kinds of labels (stickers, radiolabels, etc.), and not even all kind of textual labels, but rather the kind of labels occuring in a datum.

software
type: Class
subclass of: plan specification
editor preferred label: software
has curation status: IAO_0000120
definition: Software is a plan specification composed of a series of instructions that can be interpreted by or directly executed by a processing unit.
editor note: see sourceforge tracker discussion at http://sourceforge.net/tracker/index.php?func=detail&aid=1958818&group_id=177891&atid=886178
definition editor: PERSON: Alan Ruttenberg
definition editor: PERSON: Bjoern Peters
definition editor: PERSON: Chris Stoeckert
definition editor: PERSON: Melanie Courtot
definition source: GROUP: OBI

information carrier
type: Class
equivalent class: Class
  intersection of: quality
  intersection of: Restriction
    on property: concretizes
    some values from: information content entity
subclass of: quality
subclass of: Restriction
  on property: concretizes
  some values from: information content entity
editor preferred label: information carrier
example of usage: In the case of a printed paperback novel the physicality of the ink and of the paper form part of the information bearer. The qualities of appearing black and having a certain pattern for the ink and appearing white for the paper form part of the information carrier in this case.
has curation status: IAO_0000125
definition: A quality of an information bearer that imparts the information content
editor note: 12/15/09: There is a concern that some ways that carry information may be processes rather than qualities, such as in a 'delayed wave carrier'.
editor note: 2014-03-10: We are not certain that all information carriers are qualities. There was a discussion of dropping it.
definition editor: PERSON: Alan Ruttenberg
definition source: Smith, Ceusters, Ruttenberg, 2000 years of philosophy

data item
type: Class
subclass of: information content entity
editor preferred label: data item
example of usage: Data items include counts of things, analyte concentrations, and statistical summaries.
has curation status: IAO_0000125
definition: a data item is an information content entity that is intended to be a truthful statement about something (modulo, e.g., measurement precision or other systematic errors) and is constructed/acquired by a method which reliably tends to produce (approximately) truthful statements.
editor note: 2/2/2009 Alan and Bjoern discussing FACS run output data. This is a data item because it is about the cell population. Each element records an event and is typically further composed a set of measurment data items that record the fluorescent intensity stimulated by one of the lasers.
editor note: 2009-03-16: data item deliberatly ambiguous: we merged data set and datum to be one entity, not knowing how to define singular versus plural. So data item is more general than datum.
editor note: 2009-03-16: removed datum as alternative term as datum specifically refers to singular form, and is thus not an exact synonym.
editor note: 2014-03-31: See discussion at http://odontomachus.wordpress.com/2014/03/30/aboutness-objects-propositions/
editor note: JAR: datum -- well, this will be very tricky to define, but maybe some information-like stuff that might be put into a computer and that is meant, by someone, to denote and/or to be interpreted by some process... I would include lists, tables, sentences... I think I might defer to Barry, or to Brian Cantwell Smith JAR: A data item is an approximately justified approximately true approximate belief
definition editor: PERSON: Alan Ruttenberg
definition editor: PERSON: Chris Stoeckert
definition editor: PERSON: Jonathan Rees
alternative term: data

information content entity
type: Class
subclass of: generically dependent continuant
subclass of: Restriction
  on property: is about
  some values from: entity
editor preferred label: information content entity
example of usage: Examples of information content entites include journal articles, data, graphical layouts, and graphs.
has curation status: IAO_0000122
has curation status: IAO_0000125
definition: A generically dependent continuant that is about some thing.
definition: An information content entity is an entity that is generically dependent on some artifact and stands in relation of aboutness to some entity
editor note: 2014-03-10: The use of "thing" is intended to be general enough to include universals and configurations (see https://groups.google.com/d/msg/information-ontology/GBxvYZCk1oc/-L6B5fSBBTQJ).
editor note: information_content_entity 'is_encoded_in' some digital_entity in obi before split (040907). information_content_entity 'is_encoded_in' some physical_document in obi before split (040907). Previous. An information content entity is a non-realizable information entity that 'is encoded in' some digital or physical entity.
definition editor: PERSON: Chris Stoeckert
definition source: OBI_0000142
imported from: iao.owl
imported from: obi.owl
imported from: vo.owl

directive information content entity
type: Class
subclass of: information content entity
subclass of: Restriction
  on property: is about
  some values from: realizable entity
has curation status: IAO_0000122
has curation status: IAO_0000123
definition: An information content entity whose concretizations indicate to their bearer how to realize them in a process.
editor note: 2009-03-16: provenance: a term realizable information entity was proposed for OBI (OBI_0000337) , edited by the PlanAndPlannedProcess branch. Original definition was "is the specification of a process that can be concretized and realized by an actor" with alternative term "instruction".It has been subsequently moved to IAO where the objective for which the original term was defined was satisfied with the definitionof this, different, term.
editor note: 2013-05-30 Alan Ruttenberg: What differentiates a directive information entity from an information concretization is that it can have concretizations that are either qualities or realizable entities. The concretizations that are realizable entities are created when an individual chooses to take up the direction, i.e. has the intention to (try to) realize it.
editor note: 8/6/2009 Alan Ruttenberg: Changed label from "information entity about a realizable" after discussions at ICBO
editor note: Werner pushed back on calling it realizable information entity as it isn't realizable. However this name isn't right either. An example would be a recipe. The realizable entity would be a plan, but the information entity isn't about the plan, it, once concretized, *is* the plan. -Alan
definition editor: PERSON: Alan Ruttenberg
definition editor: PERSON: Bjoern Peters
imported from: iao.owl
imported from: obi.owl
imported from: vo.owl
label: directive information entity

dot plot
type: Class
subclass of: graph
editor preferred label: dot plot
example of usage: Dot plot of SSC-H and FSC-H.
has curation status: IAO_0000002
definition: A dot plot is a report graph which is a graphical representation of data where each data point is represented by a single dot placed on coordinates corresponding to data point values in particular dimensions.
definition editor: person:Allyson Lister
definition editor: person:Chris Stoeckert
definition source: OBI_0000123
definition source: group:OBI

graph
type: Class
subclass of: diagram
editor preferred label: graph
has curation status: IAO_0000125
definition: A diagram that presents one or more tuples of information by mapping those tuples in to a two dimensional space in a non arbitrary way.
definition editor: PERSON: Lawrence Hunter
definition editor: person:Alan Ruttenberg
definition editor: person:Allyson Lister
definition source: OBI_0000240
definition source: group:OBI

algorithm
type: Class
subclass of: plan specification
editor preferred label: algorithm
example of usage: PMID: 18378114.Genomics. 2008 Mar 28. LINKGEN: A new algorithm to process data in genetic linkage studies.
has curation status: IAO_0000120
definition: A plan specification which describes the inputs and output of mathematical functions as well as workflow of execution for achieving an predefined objective. Algorithms are realized usually by means of implementation as computer programs for execution by automata.
definition editor: Philippe Rocca-Serra
definition editor: PlanAndPlannedProcess Branch
definition source: OBI_0000270
definition source: adapted from discussion on OBI list (Matthew Pocock, Christian Cocos, Alan Ruttenberg)

curation status specification
type: Class
equivalent class: Class
  one of: IAO_0000002
  one of: IAO_0000120
  one of: IAO_0000121
  one of: IAO_0000122
  one of: IAO_0000123
  one of: IAO_0000124
  one of: IAO_0000125
  one of: IAO_0000423
  one of: IAO_0000428
subclass of: data about an ontology part
editor preferred label: curation status specification
has curation status: IAO_0000125
definition: The curation status of the term. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value.
editor note: Better to represent curation as a process with parts and then relate labels to that process (in IAO meeting)
definition editor: PERSON:Bill Bug
definition source: GROUP:OBI:<http://purl.obolibrary.org/obo/obi>
definition source: OBI_0000266

data format specification
type: Class
subclass of: directive information content entity
editor preferred label: data format specification
has curation status: IAO_0000123
definition: A data format specification is the information content borne by the document published defining the specification. Example: The ISO document specifying what encompasses an XML document; The instructions in a XSD file
editor note: 2009-03-16: provenance: term imported from OBI_0000187, which had original definition "A data format specification is a plan which organizes information. Example: The ISO document specifying what encompasses an XML document; The instructions in a XSD file"
definition editor: PERSON: Alan Ruttenberg
definition editor: PlanAndPlannedProcess Branch
definition source: OBI branch derived
definition source: OBI_0000187

data set
type: Class
subclass of: data item
editor preferred label: data set
example of usage: Intensity values in a CEL file or from multiple CEL files comprise a data set (as opposed to the CEL files themselves).
has curation status: IAO_0000125
definition: A data item that is an aggregate of other data items of the same type that have something in common. Averages and distributions can be determined for data sets.
editor note: 2009/10/23 Alan Ruttenberg. The intention is that this term represent collections of like data. So this isn't for, e.g. the whole contents of a cel file, which includes parameters, metadata etc. This is more like java arrays of a certain rather specific type
editor note: 2014-05-05: Data sets are aggregates and thus must include two or more data items. We have chosen not to add logical axioms to make this restriction.
definition editor: person:Allyson Lister
definition editor: person:Chris Stoeckert
definition source: OBI_0000042
definition source: group:OBI

image
type: Class
subclass of: figure
editor preferred label: image
has curation status: IAO_0000122
definition: An image is an affine projection to a two dimensional surface, of measurements of some quality of an entity or entities repeated at regular intervals across a spatial range, where the measurements are represented as color and luminosity on the projected on surface.
definition editor: person:Alan Ruttenberg
definition editor: person:Allyson
definition editor: person:Chris Stoeckert
definition source: OBI_0000030
definition source: group:OBI

data about an ontology part
type: Class
subclass of: data item
definition: data about an ontology part is a data item about a part of an ontology, for example a term
definition editor: Person:Alan Ruttenberg

plan specification
type: Class
subclass of: directive information content entity
subclass of: Restriction
  on property: has_part
  some values from: objective specification
subclass of: Restriction
  on property: has_part
  some values from: action specification
editor preferred label: plan specification
example of usage: PMID: 18323827.Nat Med. 2008 Mar;14(3):226.New plan proposed to help resolve conflicting medical advice.
has curation status: IAO_0000122
definition: A directive information entity with action specifications and objective specifications as parts that, when concretized, is realized in a process in which the bearer tries to achieve the objectives by taking the actions specified.
editor note: 2009-03-16: provenance: a term a plan was proposed for OBI (OBI_0000344) , edited by the PlanAndPlannedProcess branch. Original definition was " a plan is a specification of a process that is realized by an actor to achieve the objective specified as part of the plan". It has been subsequently moved to IAO where the objective for which the original term was defined was satisfied with the definitionof this, different, term.
editor note: 2014-03-31: A plan specification can have other parts, such as conditional specifications.
editor note: Alternative previous definition: a plan is a set of instructions that specify how an objective should be achieved
definition editor: Alan Ruttenberg
definition source: OBI Plan and Planned Process branch
definition source: OBI_0000344
comment: 2/3/2009 Comment from OBI review. Action specification not well enough specified. Conditional specification not well enough specified. Question whether all plan specifications have objective specifications. Request that IAO either clarify these or change definitions not to use them

material information bearer
type: Class
equivalent class: Class
  intersection of: material entity
  intersection of: Restriction
    on property: bearer of
    some values from: Restriction
      on property: concretizes
      some values from: information content entity
subclass of: material entity
subclass of: Restriction
  on property: bearer of
  some values from: Restriction
    on property: concretizes
    some values from: information content entity
editor preferred label: material information bearer
example of usage: A page of a paperback novel with writing on it. The paper itself is a material information bearer, the pattern of ink is the information carrier.
example of usage: a brain
example of usage: a hard drive
has curation status: IAO_0000122
definition: A material entity in which a concretization of an information content entity inheres.
definition editor: GROUP: IAO

histogram
type: Class
subclass of: graph
editor preferred label: histogram
has curation status: IAO_0000122
definition: A histogram is a report graph which is a statistical description of a distribution in terms of occurrence frequencies of different event classes.
definition editor: PERSON:Chris Stoeckert
definition editor: PERSON:James Malone
definition editor: PERSON:Melanie Courtot
definition source: GROUP:OBI

heatmap
type: Class
subclass of: graph
editor preferred label: heatmap
has curation status: IAO_0000122
definition: A heatmap is a report graph which is a graphical representation of data where the values taken by a variable(s) are shown as colors in a two-dimensional map.
definition editor: PERSON:Chris Stoeckert
definition editor: PERSON:James Malone
definition editor: PERSON:Melanie Courtot
definition source: GROUP:OBI

dendrogram
type: Class
subclass of: graph
editor preferred label: dendrogram
example of usage: Dendrograms are often used in computational biology to illustrate the clustering of genes.
has curation status: IAO_0000122
definition: A dendrogram is a report graph which is a tree diagram frequently used to illustrate the arrangement of the clusters produced by a clustering algorithm.
definition editor: PERSON:Chris Stoeckert
definition editor: PERSON:James Malone
definition editor: PERSON:Melanie Courtot
definition source: WEB: http://en.wikipedia.org/wiki/Dendrogram

scatter plot
type: Class
subclass of: graph
editor preferred label: scatter plot
example of usage: Comparison of gene expression values in two samples can be displayed in a scatter plot
has curation status: IAO_0000122
definition: A scatterplot is a graph which uses Cartesian coordinates to display values for two variables for a set of data. The data is displayed as a collection of points, each having the value of one variable determining the position on the horizontal axis and the value of the other variable determining the position on the vertical axis.
definition editor: PERSON:Chris Stoeckert
definition editor: PERSON:James Malone
definition editor: PERSON:Melanie Courtot
alternative term: scattergraph
definition source: WEB: http://en.wikipedia.org/wiki/Scatterplot

obsolescence reason specification
type: Class
equivalent class: Class
  one of: IAO_0000103
  one of: IAO_0000226
  one of: IAO_0000227
  one of: IAO_0000228
  one of: IAO_0000229
subclass of: data about an ontology part
editor preferred label: obsolescence reason specification
has curation status: IAO_0000125
definition: The reason for which a term has been deprecated. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value.
editor note: The creation of this class has been inspired in part by Werner Ceusters' paper, Applying evolutionary terminology auditing to the Gene Ontology.
definition editor: PERSON: Alan Ruttenberg
definition editor: PERSON: Melanie Courtot

figure
type: Class
subclass of: information content entity
editor preferred label: figure
example of usage: Any picture, diagram or table
has curation status: IAO_0000120
definition: An information content entity consisting of a two dimensional arrangement of information content entities such that the arrangement itself is about something.
definition editor: PERSON: Lawrence Hunter

diagram
type: Class
subclass of: figure
editor preferred label: diagram
example of usage: A molecular structure ribbon cartoon showing helices, turns and sheets and their relations to each other in space.
has curation status: IAO_0000120
definition: A figure that expresses one or more propositions
definition editor: PERSON: Lawrence Hunter

document
type: Class
subclass of: information content entity
editor preferred label: document
example of usage: A journal article, patent application, laboratory notebook, or a book
has curation status: IAO_0000120
definition: A collection of information content entities intended to be understood together as a whole
definition editor: PERSON: Lawrence Hunter

denotator type
type: Class
equivalent class: Class
  one of: IAO_0000410
  one of: IAO_0000420
  one of: IAO_0000421
subclass of: data about an ontology part
example of usage: The Basic Formal Ontology ontology makes a distinction between Universals and defined classes, where the formal are "natural kinds" and the latter arbitrary collections of entities.
definition: A denotator type indicates how a term should be interpreted from an ontological perspective.
definition editor: Alan Ruttenberg
definition source: Barry Smith, Werner Ceusters

infectious agent role
type: Class
subclass of: pathogen role
subclass of: Restriction
  on property: inheres in
  some values from: Class
    intersection of: infectious agent
    intersection of: Restriction
      on property: located_in
      some values from: host
definition: A role borne by an infectious agent when contained in a host in which its infectious disposition can be realized.
definition editor: Albert Goldfain
definition editor: Alexander Diehl
definition editor: Lindsay Cowell
imported from: ido.owl

pathogen role
type: Class
subclass of: role
subclass of: Restriction
  on property: inheres in
  some values from: pathogen
definition: A role borne by pathogen in virtue of the fact that it or one of its products is sufficiently close to an organism towards which it has the pathogenic disposition to allow realization of the pathogenic disposition.
definition editor: Albert Goldfain
definition editor: Alexander Diehl
definition editor: Lindsay Cowell
imported from: ido.owl
comment: Clostridium botulinum is an example of an entity with the capability to bear the pathogen role but that does not have the capability to bear the infectious agent role or the parasite role. The influenza viruses are examples of organisms that can bear both the infectious agent and pathogen roles.

virulence factor disposition
type: Class
subclass of: disposition
subclass of: Restriction
  on property: inheres in
  some values from: molecular entity
definition: A disposition borne by a biological macromolecule produced by a pathogen that is a disposition to undergo processes that increase the pathogen's virulence.
definition editor: Albert Goldfain
definition editor: Alexander Diehl
definition editor: Lindsay Cowell
imported from: ido.owl
comment: The virulence factor disposition is typically realized in processes that improve survival of the pathogen in a host, increase the likelihood of transmission to a host, or cause pathological processes in a host.

primary infection role
type: Class
subclass of: role
subclass of: Restriction
  on property: inheres in
  some values from: infectious disorder
definition: A role borne by an infectious disorder in virtue of the fact that (1) the host has at least two distinct infectious disorders, where neither arose from the other through metastasis, (2) at the time the infectious disorder was established in the host, the host had no infectious disorder, and (3) the infectious disorder increases the host's susceptibility to infectious disorders.
definition editor: Albert Goldfain
definition editor: Alexander Diehl
definition editor: Lindsay Cowell
imported from: ido.owl
comment: The role is realized in a process by which the infectious disorder is established in the host.

secondary infection role
type: Class
subclass of: role
subclass of: Restriction
  on property: inheres in
  some values from: infectious disorder
definition: A role borne by an infectious disorder in virtue of the fact that (1) the host has at least two distinct infectious disorders, where neither arose from the other through metastasis, (2) at the time the infectious disorder was established in the host, the host had a primary infectious disorder, and (3) establishment of the infectious disorder occurs because of increased susceptibility to infectious disorders conferred by the primary infectious disorder.
definition editor: Albert Goldfain
definition editor: Alexander Diehl
definition editor: Lindsay Cowell
imported from: ido.owl
comment: The role is realized in a process by which the infectious disorder is established in the host.

infectious disease
type: Class
equivalent class: Class
  intersection of: OGMS_0000031
  intersection of: Restriction
    on property: has material basis in
    some values from: infectious disorder
  intersection of: Restriction
    on property: inheres in
    some values from: Class
      intersection of: organism
      intersection of: Restriction
        on property: part of
        some values from: Class
  intersection of: Restriction
    on property: realized in
    all values from: infectious disease course
  intersection of: Restriction
    on property: has material basis in
    all values from: infectious disorder
  intersection of: Restriction
    on property: inheres in
    all values from: Class
      intersection of: organism
      intersection of: Restriction
        on property: part of
        some values from: Class
subclass of: OGMS_0000031
subclass of: Restriction
  on property: has material basis in
  some values from: infectious disorder
subclass of: Restriction
  on property: inheres in
  some values from: Class
    intersection of: organism
    intersection of: Restriction
      on property: part of
      some values from: Class
        intersection of: OGMS_0000087
        intersection of: Restriction
definition: A disease whose physical basis is an infectious disorder.
definition editor: Albert Goldfain
definition editor: Alexander Diehl
definition editor: Lindsay Cowell
alternative term: tranmissible disease
imported from: ido.owl
comment: The disposition is realized in an infectious disease course.

adhesion disposition
type: Class
subclass of: disposition
subclass of: Class
  intersection of: Restriction
    on property: inheres in
    some values from: molecular entity
  intersection of: Restriction
    on property: realized in
    all values from: adhesion of symbiont to host
definition: A disposition borne by a biological macromolecule that is the disposition to participate in adherence to a host.
definition editor: Albert Goldfain
definition editor: Alexander Diehl
definition editor: Lindsay Cowell
imported from: ido.owl
comment: The disposition is realized in an adherence to host process.

pathogenic disposition
type: Class
subclass of: disposition
subclass of: Class
  intersection of: Restriction
    on property: inheres in
    some values from: material entity
  intersection of: Restriction
    on property: realized in
    all values from: Class
      intersection of: process
      intersection of: Restriction
        on property: results in formation of
        some values from: OGMS_0000045
definition: A disposition to initiate processes that result in a disorder.
definition editor: Albert Goldfain
definition editor: Alexander Diehl
definition editor: Lindsay Cowell
alternative term: pathogenicity
imported from: ido.owl
comment: A pathogenic disposition is realized in processes that create a disorder.
comment: The use of 'initiates' is intended to convey that a pathogenic disposition is realized when processes resulting in a disorder begin because of some action on the part of the bearer of the disposition. By this interpretation of 'initiates', disorder-causing entities such as glass, UV light, and toxins do not have a pathogenic disposition.

infectious disposition
type: Class
subclass of: pathogenic disposition
subclass of: Class
  intersection of: Restriction
    on property: inheres in
    some values from: organism
  intersection of: Restriction
    on property: realized in
    all values from: Class
      intersection of: process
      intersection of: Restriction
        on property: has_part
        some values from: establishment of localization in host
      intersection of: Restriction
        on property: has_part
        some values from: appearance of disorder
      intersection of: Restriction
        on property: has_part
        some values from: TRANS_0000000
definition: A pathogenic disposition that inheres in an organism and is a disposition for that organism (1) to be transmitted to a host, (2) to establish itself in the host, (3) to initiate processes that result in a disorder in the host, and (4) to become part of that disorder.
definition editor: Albert Goldfain
definition editor: Alexander Diehl
definition editor: Lindsay Cowell
imported from: ido.owl
comment: The disposition is realized in a process that has as part a transmission process, an establishment in host process, a process that results in a disorder, and a process in which the bearer of the disposition becomes part of that disorder. The infectious disposition has a complementary disposition that inheres in an organism and is the capability to be host to an organism with an infectious disposition and to undergo processes initiated by that infectious organism that result in a disorder.

susceptibility
type: Class
subclass of: quality
subclass of: Restriction
  on property: inheres in
  some values from: material entity
definition: A quality that inheres in an entity and is the degree to which it can be harmed by another entity.
definition editor: Albert Goldfain
definition editor: Alexander Diehl
definition editor: Lindsay Cowell
imported from: ido.owl
comment: Low susceptibility is often referred to as resistance. In this sense, resistance is a quality.

susceptibility to infectious agent
type: Class
subclass of: susceptibility
subclass of: Restriction
  on property: inheres in
  some values from: organism
definition: A susceptibility that inheres in an organism and is the degree to which it can be harmed by an infectious agent.
definition editor: Albert Goldfain
definition editor: Alexander Diehl
definition editor: Lindsay Cowell
imported from: ido.owl

complex infection
type: Class
subclass of: infection
definition: An infection comprised of infectious organisms from different Species.
definition editor: Albert Goldfain
definition editor: Alexander Diehl
definition editor: Lindsay Cowell
alternative term: mixed infection
alternative term: polymicrobial infection
imported from: ido.owl

extracellular infection
type: Class
equivalent class: Class
  intersection of: infection
  intersection of: Restriction
    on property: has_part
    some values from: Class
      intersection of: infectious agent
      intersection of: Class
        complement of: Restriction
subclass of: infection
subclass of: Restriction
  on property: has_part
  some values from: Class
    intersection of: infectious agent
    intersection of: Class
      complement of: Restriction
        on property: located_in
        some values from: cell
definition: An infection for which the infectious agents that are part of the infection persist in the extracellular space of the host.
definition editor: Albert Goldfain
definition editor: Alexander Diehl
definition editor: Lindsay Cowell
imported from: ido.owl

intracellular infection
type: Class
equivalent class: Class
  intersection of: infection
  intersection of: Restriction
    on property: has_part
    some values from: Class
      intersection of: infectious agent
      intersection of: Restriction
        on property: located_in
        some values from: cell
subclass of: infection
subclass of: Restriction
  on property: has_part
  some values from: Class
    intersection of: infectious agent
    intersection of: Restriction
      on property: located_in
      some values from: cell
definition: An infection for which the infectious agents that are part of the infection persist inside host cells.
definition editor: Albert Goldfain
definition editor: Alexander Diehl
definition editor: Lindsay Cowell
imported from: ido.owl

systemic infection
type: Class
subclass of: infection
definition: An infection for which the infectious agents that are part of the infection are distributed throughout the host.
definition editor: Albert Goldfain
definition editor: Alexander Diehl
definition editor: Lindsay Cowell
imported from: ido.owl

local infection
type: Class
subclass of: infection
definition: An infection for which the infectious agents that are part of the infection are limited to a relatively small area of the host's body.
definition editor: Albert Goldfain
definition editor: Alexander Diehl
definition editor: Lindsay Cowell
imported from: ido.owl

focal infection
type: Class
subclass of: local infection
definition: A local infection for which symptoms are observed in parts of the host's extended organism that are distant from the infection.
definition editor: Albert Goldfain
definition editor: Alexander Diehl
definition editor: Lindsay Cowell
imported from: ido.owl

acute infectious disease course
type: Class
subclass of: infectious disease course
definition: An infectious disease course that begins soon after infection is established and progresses rapidly to severe stages.
definition editor: Albert Goldfain
definition editor: Alexander Diehl
definition editor: Lindsay Cowell
imported from: ido.owl

infectious disease course
type: Class
equivalent class: Class
  intersection of: OGMS_0000063
  intersection of: Restriction
    on property: realizes
    some values from: infectious disease
subclass of: OGMS_0000063
subclass of: Restriction
  on property: realizes
  some values from: infectious disease
definition: A disease course that is the realization of an infectious disease.
definition editor: Albert Goldfain
definition editor: Alexander Diehl
definition editor: Lindsay Cowell
imported from: ido.owl

infectious disorder
type: Class
equivalent class: Class
  intersection of: infection
  intersection of: OGMS_0000045
subclass of: infection
subclass of: OGMS_0000045
definition: An infection that is clinically abnormal.
definition editor: Albert Goldfain
definition editor: Alexander Diehl
definition editor: Lindsay Cowell
imported from: ido.owl

viremia
type: Class
equivalent class: Class
  intersection of: infection
  intersection of: Restriction
    on property: has_part
    some values from: Class
      intersection of: infectious agent
      intersection of: Viruses
      intersection of: Restriction
        on property: located_in
        some values from: UBERON_0000178
subclass of: extracellular infection
subclass of: Restriction
  on property: has_part
  some values from: Class
    intersection of: infectious agent
    intersection of: Viruses
    intersection of: Restriction
      on property: located_in
      some values from: UBERON_0000178
definition: An infection that has as part virus particles located in the blood.
definition editor: Albert Goldfain
definition editor: Alexander Diehl
definition editor: Lindsay Cowell
imported from: ido.owl

bacteremia
type: Class
equivalent class: Class
  intersection of: infection
  intersection of: Restriction
    on property: has_part
    some values from: Class
      intersection of: infectious agent
      intersection of: Bacteria
      intersection of: Restriction
        on property: located_in
        some values from: UBERON_0000178
subclass of: extracellular infection
subclass of: Restriction
  on property: has_part
  some values from: Class
    intersection of: infectious agent
    intersection of: Bacteria
    intersection of: Restriction
      on property: located_in
      some values from: UBERON_0000178
definition: An infection that has as part bacteria located in the blood.
definition editor: Albert Goldfain
definition editor: Alexander Diehl
definition editor: Lindsay Cowell
imported from: ido.owl

pathogen
type: Class
equivalent class: Class
  intersection of: material entity
  intersection of: Restriction
    on property: has disposition
    some values from: pathogenic disposition
subclass of: material entity
subclass of: Restriction
  on property: has disposition
  some values from: pathogenic disposition
definition: A material entity with a pathogenic disposition.
definition editor: Albert Goldfain
definition editor: Alexander Diehl
definition editor: Lindsay Cowell
imported from: ido.owl

host
type: Class
equivalent class: Class
  intersection of: organism
  intersection of: Restriction
    on property: has_role
    some values from: host role
subclass of: organism
subclass of: Restriction
  on property: has_role
  some values from: host role
definition: An organism bearing a host role.
definition editor: Albert Goldfain
definition editor: Alexander Diehl
definition editor: Lindsay Cowell
imported from: ido.owl

virulence factor
type: Class
equivalent class: Class
  intersection of: molecular entity
  intersection of: Restriction
    on property: has disposition
    some values from: virulence factor disposition
subclass of: molecular entity
subclass of: Restriction
  on property: has disposition
  some values from: virulence factor disposition
definition: A biological macromolecule produced by a pathogen and that has a virulence factor disposition.
definition editor: Albert Goldfain
definition editor: Alexander Diehl
definition editor: Lindsay Cowell
imported from: ido.owl

adhesion factor
type: Class
equivalent class: Class
  intersection of: molecular entity
  intersection of: Restriction
    on property: has disposition
    some values from: adhesion disposition
subclass of: molecular entity
subclass of: Restriction
  on property: has disposition
  some values from: adhesion disposition
definition: A biological macromolecule that has an adhesion disposition.
definition editor: Albert Goldfain
definition editor: Alexander Diehl
definition editor: Lindsay Cowell
alternative term: adhesin
alternative term: adhesion molecule
imported from: ido.owl

primary infection
type: Class
equivalent class: Class
  intersection of: infectious disorder
  intersection of: Restriction
    on property: has_role
    some values from: primary infection role
subclass of: infectious disorder
subclass of: Restriction
  on property: has_role
  some values from: primary infection role
definition: An infection bearing the primary infection role.
definition editor: Albert Goldfain
definition editor: Alexander Diehl
definition editor: Lindsay Cowell
imported from: ido.owl

secondary infection
type: Class
equivalent class: Class
  intersection of: infectious disorder
  intersection of: Restriction
    on property: has_role
    some values from: secondary infection role
subclass of: infectious disorder
subclass of: Restriction
  on property: has_role
  some values from: secondary infection role
definition: An infection bearing the secondary infection role.
definition editor: Albert Goldfain
definition editor: Alexander Diehl
definition editor: Lindsay Cowell
imported from: ido.owl

subclinical infection
type: Class
subclass of: infection
definition: An infection that is part of an asymptomatic host.
definition editor: Albert Goldfain
definition editor: Alexander Diehl
definition editor: Lindsay Cowell
imported from: ido.owl

infection
type: Class
subclass of: material entity
subclass of: Class
  intersection of: Restriction
    on property: part of
    some values from: OGMS_0000087
  intersection of: Restriction
    on property: has_part
    some values from: infectious agent
editor preferred label: infection
definition: A part of an extended organism that itself has as part a population of one or more infectious agents and that (1) exists as a result of processes initiated by members of the infectious agent population and is (2) clinically abnormal in virtue of the presence of this infectious agent population, or (3) has a disposition to bring clinical abnormality to immunocompetent organisms of the same Species as the host (the organism corresponding to the extended organism) through transmission of a member or offspring of a member of the infectious agent population.
definition editor: Albert Goldfain
definition editor: Alexander Diehl
definition editor: Lindsay Cowell
imported from: ido.owl
comment: The organism corresponding to the extended organism is host to the infectious agents. By this definition, parts of the host can be considered part of the infection.

infectious agent
type: Class
equivalent class: Class
  intersection of: organism
  intersection of: Restriction
    on property: has disposition
    some values from: infectious disposition
subclass of: pathogen
subclass of: organism
subclass of: Restriction
  on property: has disposition
  some values from: infectious disposition
definition: An organism that has an infectious disposition.
definition editor: Albert Goldfain
definition editor: Alexander Diehl
definition editor: Lindsay Cowell
imported from: ido.owl

establishment of localization in host
type: Class
equivalent class: Restriction
  on property: occurs in
  some values from: host
subclass of: establishment of localization
subclass of: Restriction
  on property: occurs in
  some values from: host
definition: An establishment of localization process in which a material entity reaches a site in an organism in which it can survive, grow, multiply, or mature.
editor note: Requested addition of this term to the GO.
definition editor: Albert Goldfain
definition editor: Alexander Diehl
definition editor: Lindsay Cowell
imported from: ido.owl
comment: An organism begins bearing a particular host role as soon as the extended organism contains the relevant material entity, regardless of that entity's location in the extended organism. An establishment process is any process by which the entity reaches a location in the extended organism in which it can persist and continue its lifecycle. For example, an organism is host to a virus as soon as any part of the extended organism is occupied by virus particles. During an establishment process, virus particles enter host cells of the relevant type, and viral DNA is integrated into host DNA.

appearance of disorder
type: Class
equivalent class: Restriction
  on property: results in formation of
  some values from: OGMS_0000045
subclass of: biological_process
subclass of: Restriction
  on property: results in formation of
  some values from: OGMS_0000045
definition: A process by which a disorder comes into existence.
definition editor: Albert Goldfain
definition editor: Alexander Diehl
definition editor: Lindsay Cowell
imported from: ido.owl

acute infection
type: Class
equivalent class: Class
  intersection of: infectious disorder
  intersection of: Restriction
    on property:
      inverse of: has material basis in
    some values from: Restriction
      on property: realized in
      some values from: acute infectious disease course
subclass of: infectious disorder
subclass of: Restriction
  on property:
    inverse of: has material basis in
  some values from: Restriction
    on property: realized in
    some values from: acute infectious disease course
definition: An infectious disorder that is the physical basis for an unfolding acute infectious disease course.
definition editor: Albert Goldfain
definition editor: Alexander Diehl
definition editor: Lindsay Cowell
imported from: ido.owl

chronic infection
type: Class
subclass of: infection
definition: An infection that persists for an extended period of time.
definition editor: Albert Goldfain
definition editor: Alexander Diehl
definition editor: Lindsay Cowell
alternative term: persistent infection
imported from: ido.owl

host role
type: Class
subclass of: role
subclass of: Restriction
  on property: inheres in
  some values from: Class
    intersection of: organism
    intersection of: Restriction
      on property: part of
      some values from: Class
        intersection of: OGMS_0000087
        intersection of: Restriction
definition: A role borne by an organism in virtue of the fact that it's extended organism contains a material entity other than the organism.
definition editor: Albert Goldfain
definition editor: Alexander Diehl
definition editor: Lindsay Cowell
imported from: ido.owl

hospital-acquired infection
type: Class
subclass of: infection
definition: An infection resulting from a transmission process that unfolds in a hospital.
definition editor: Albert Goldfain
definition editor: Alexander Diehl
definition editor: Lindsay Cowell
alternative term: nosocomial infection
imported from: ido.owl

community-acquired infection
type: Class
subclass of: infection
definition: An infection resulting from a transmission process that did not unfold in a health care facility.
definition editor: Albert Goldfain
definition editor: Alexander Diehl
definition editor: Lindsay Cowell
imported from: ido.owl

metatstatic infection
type: Class
subclass of: infection
definition: An infection established as a result of spread from another infection in a non-adjacent location in the extended organism of the host.
definition editor: Albert Goldfain
definition editor: Alexander Diehl
definition editor: Lindsay Cowell
imported from: ido.owl

nursing-home acquired infection
type: Class
subclass of: infection
definition: An infection resulting from a transmission process that unfolds in a nursing home.
definition editor: Albert Goldfain
definition editor: Alexander Diehl
definition editor: Lindsay Cowell
imported from: ido.owl

simple infection
type: Class
subclass of: infection
definition: An infection comprised of infectious organisms all of the same Species.
definition editor: Albert Goldfain
definition editor: Alexander Diehl
definition editor: Lindsay Cowell
imported from: ido.owl

candidiasis
type: Class
subclass of: infection
definition: An infection that has as part organisms of the Genus Candida.
definition editor: Albert Goldfain
definition editor: Alexander Diehl
definition editor: Lindsay Cowell
imported from: ido.owl

trichomoniasis
type: Class
subclass of: infection
definition: An infection that has as part organisms of the Species Trichomonas vaginalis.
definition editor: Albert Goldfain
definition editor: Alexander Diehl
definition editor: Lindsay Cowell
imported from: ido.owl

leptospirosis
type: Class
subclass of: infection
definition: An infection that has as part organisms of the Genus Leptospira.
definition editor: Albert Goldfain
definition editor: Alexander Diehl
definition editor: Lindsay Cowell
imported from: ido.owl

Shigellosis
type: Class
subclass of: infection
definition: An infection located in the bowel and that has as part organisms of the Genus Shigella.
definition editor: Albert Goldfain
definition editor: Alexander Diehl
definition editor: Lindsay Cowell
imported from: ido.owl

amebiasis
type: Class
subclass of: infection
definition: An infection located in the colon and that has as part organisms of the Species Entamoeba histolytica
definition editor: Albert Goldfain
definition editor: Alexander Diehl
definition editor: Lindsay Cowell
imported from: ido.owl

attenuated disposition
type: Class
subclass of: disposition
type: NamedIndividual
definition: A disposition of a pathogen becoming harmless or less virulent towards its host, when the pathogen is altered physically or genetically. This disposition is realized in the process of the pathogen-host interaction. It is host dependent, or host specific.
creator: YL, Y.H.
definition source: http://en.wikipedia.org/wiki/Attenuated_vaccine
imported from: brucellosis.owl

interaction
type: Class
subclass of: process
subclass of: Restriction
  on property: has participant
  some values from: Class
    intersection of: entity
    intersection of: Restriction
      on property: has_role
      some values from: interactor role
definition: Interaction is a processual entity that has two or more participants (i.e., interactors) that have an effect upon one another.
definition editor: YH, ZX
imported from: ino.owl
has literature mining keywords: interact, interacted, interacting, interaction, interaction, interactor, interactors, interacts, participates; plays a role, contribute, contributed, contributes, contributing, engagement, engagements, engages, engaging, involve, involved, involves, involving, act, acted, acting, acts

regulator role
type: Class
subclass of: interactor role
definition: an regulator role that is borne by a material entity that regulates an interaction.
definition editor: YH
imported from: ino.owl

input interactor role
type: Class
subclass of: interactor role
definition: an interactor role that is borne by a material entity that acts as an input of an interaction.
definition editor: YH, ZX
alternative term: interaction input role
imported from: ino.owl

output interactor role
type: Class
subclass of: interactor role
definition: an interactor role that is borne by a material entity that acts as an output of an interaction.
definition editor: YH, ZX
alternative term: interaction output role
imported from: ino.owl

activator role
type: Class
subclass of: positive regulator role
definition: a positive regulator role that is borne by a material entity that activates an interaction.
definition editor: YH
imported from: ino.owl

interactor role
type: Class
subclass of: role
subclass of: Restriction
  on property: realized in
  some values from: interaction
definition: a role that is borne by a material entity to act as a participant in an interaction process.
definition editor: YH, ZX
imported from: ino.owl

chemical reaction catalyst role
type: Class
subclass of: interactor role
definition: an interactor role that is played by a material entity that starts or speeds up a chemical reaction while undergoing no permanent change itself.
definition editor: YH
imported from: ino.owl

positive regulator role
type: Class
subclass of: regulator role
definition: an interactor role that is borne by a material entity that positively regulates an interaction.
definition editor: YH
imported from: ino.owl

negative regulator role
type: Class
subclass of: regulator role
definition: an interactor role that is borne by a material entity that negatively regulates an interaction.
definition editor: YH
imported from: ino.owl

deactivator role
type: Class
subclass of: negative regulator role
definition: a negative regulator role that is borne by a material entity that deactivates, inhibits, blocks, or disrupts the action of a biological agent (e.g., enzyme).
definition editor: YH
imported from: ino.owl

motivator role
type: Class
subclass of: input interactor role
definition: an input interactor role that is borne by a material entity that motivates a process.
definition editor: Oliver He
definition source: https://en.wikipedia.org/wiki/Motivation#Herzberg's_two-factor_theory
imported from: ino.owl

hygiene factor role
type: Class
subclass of: input interactor role
definition: an input interactor role that is borne by a material entity (e.g. status, job security, salary and fringe benefits) that do not motivate if present, but, if absent, result in demotivation.
definition editor: Oliver He
definition source: https://en.wikipedia.org/wiki/Motivation#Herzberg's_two-factor_theory
imported from: ino.owl

Cricetinae
type: Class
subclass of: Muroidea
imported from: ncbitaxon.owl
has_rank: NCBITaxon subfamily
数据库_交叉_引用: GC_ID:1
has_exact_synonym: hamsters
有_obo_命名空间: ncbi_taxonomy

Cricetulus griseus
type: Class
subclass of: Rodentia
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Cgri-
has_related_synonym: Chinese hamster
id: NCBITaxon:10029
label: 灰仓鼠 @zh

Axiom
annotated source: Cricetulus griseus
annotated property: has_related_synonym
annotated target: Cgri-
数据库_交叉_引用: PRO:DAN
has_synonym_type: Unique short label for PRO terms for display purposes; based on orthology

Axiom
annotated source: Cricetulus griseus
annotated property: has_related_synonym
annotated target: Chinese hamster
has_synonym_type: Label appended to organism-specific terms in place of scientific name

Mesocricetus auratus
type: Class
subclass of: Rodentia
has_exact_synonym: golden hamster
有_obo_命名空间: ncbi_taxonomy
id: NCBITaxon:10036

Axiom
annotated source: Mesocricetus auratus
annotated property: has_exact_synonym
annotated target: golden hamster
has_synonym_type: Label appended to organism-specific terms in place of scientific name

Gerbillinae
type: Class
subclass of: Muridae
imported from: ncbitaxon.owl
has_rank: NCBITaxon subfamily
数据库_交叉_引用: GC_ID:1
has_exact_synonym: gerbils
有_obo_命名空间: ncbi_taxonomy

Meriones unguiculatus
type: Class
subclass of: Gerbillinae
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:1
has_exact_synonym: Mongolian gerbil
has_exact_synonym: Mongolian jird
有_obo_命名空间: ncbi_taxonomy

Muridae
type: Class
subclass of: Muroidea
imported from: ncbitaxon.owl
has_rank: NCBITaxon family
数据库_交叉_引用: GC_ID:1
数据库_交叉_引用: PMID:15371245
有_obo_命名空间: ncbi_taxonomy

Mus <mouse, genus>
type: Class
subclass of: Murinae
imported from: ncbitaxon.owl
has_rank: NCBITaxon genus
数据库_交叉_引用: GC_ID:1
has_exact_synonym: Mus
has_exact_synonym: mice
has_exact_synonym: mouse
有_obo_命名空间: ncbi_taxonomy

Mus musculus
type: Class
subclass of: Mus <mouse, genus>
editor preferred label: Mus musculus
alternative term: house mouse
alternative term: mouse
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_alternative_id: NCBITaxon:85055
数据库_交叉_引用: GC_ID:1
has_exact_synonym: house mouse
has_exact_synonym: mouse
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Mus muscaris
has_related_synonym: m
has_related_synonym: mice C57BL/6xCBA/CaJ hybrid
has_related_synonym: mouse
id: NCBITaxon:10090
label: 小家鼠 @zh

Axiom
annotated source: Mus musculus
annotated property: has_related_synonym
annotated target: m
数据库_交叉_引用: PRO:DAN
has_synonym_type: Unique short label for PRO terms for display purposes; based on orthology

Axiom
annotated source: Mus musculus
annotated property: has_related_synonym
annotated target: mouse
has_synonym_type: Label appended to organism-specific terms in place of scientific name

Rattus
type: Class
subclass of: Murinae
imported from: ncbitaxon.owl
has_rank: NCBITaxon genus
数据库_交叉_引用: GC_ID:1
has_exact_synonym: rat
has_exact_synonym: rats
有_obo_命名空间: ncbi_taxonomy

Chinchillidae
type: Class
subclass of: Rodentia
imported from: ncbitaxon.owl
has_rank: NCBITaxon family
数据库_交叉_引用: GC_ID:1
has_exact_synonym: chinchillas
has_exact_synonym: chinchillas and viscachas
有_obo_命名空间: ncbi_taxonomy

Viruses
type: Class
subclass of: organism
subclass of: Restriction
  on property: has_part
  some values from: genome of Viruses
editor preferred label: Viruses
imported from: ncbitaxon.owl
has_rank: NCBITaxon superkingdom
数据库_交叉_引用: GC_ID:1
has_exact_synonym: Viruses
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Vira
has_related_synonym: Viridae
has_related_synonym: viral-
has_related_synonym: viruses
id: NCBITaxon:10239
label: virus

Axiom
annotated source: Viruses
annotated property: has_related_synonym
annotated target: viral-
数据库_交叉_引用: PRO:DAN
has_synonym_type: Unique short label for PRO terms for display purposes; based on orthology

Chordopoxvirinae
type: Class
subclass of: dsDNA viruses, no RNA stage
subclass of: Restriction
  on property: has_part
  some values from: genome of Chordopoxvirinae
imported from: ncbitaxon.owl
has_rank: NCBITaxon subfamily
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy

Orthopoxvirus
type: Class
subclass of: Chordopoxvirinae
subclass of: Restriction
  on property: has_part
  some values from: genome of Orthopoxvirus
imported from: ncbitaxon.owl
has_rank: NCBITaxon genus
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy

Cowpox virus
type: Class
subclass of: Orthopoxvirus
subclass of: Restriction
  on property: has_part
  some values from: genome of Cowpox virus
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_broad_synonym: CPXV
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: cowpox virus CPV

Vaccinia virus
type: Class
subclass of: Orthopoxvirus
subclass of: Restriction
  on property: has_part
  some values from: genome of Vaccinia virus
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: vaccinia virus VV

Vaccinia virus Tian Tan
type: Class
subclass of: Vaccinia virus
subclass of: Restriction
  on property: has_part
  some values from: genome of Vaccinia virus Tian Tan
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Vaccinia virus (strain Tian Tan)

Vaccinia virus WR
type: Class
subclass of: Vaccinia virus
subclass of: Restriction
  on property: has_part
  some values from: genome of Vaccinia virus WR
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Vaccinia virus (strain WR)
id: NCBITaxon:10254

Orf virus
type: Class
subclass of: Chordopoxvirinae
subclass of: Restriction
  on property: has_part
  some values from: genome of Orf virus
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Contagious pustular dermatitis virus
has_related_synonym: orf virus OV

Sheeppox virus
type: Class
subclass of: Chordopoxvirinae
subclass of: Restriction
  on property: has_part
  some values from: genome of Sheeppox virus
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_broad_synonym: SPPV
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: sheep pox virus

Leporipoxvirus
type: Class
subclass of: Chordopoxvirinae
subclass of: Restriction
  on property: has_part
  some values from: genome of Leporipoxvirus
imported from: ncbitaxon.owl
has_rank: NCBITaxon genus
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy

Rabbit fibroma virus
type: Class
subclass of: Leporipoxvirus
subclass of: Restriction
  on property: has_part
  some values from: genome of Rabbit fibroma virus
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_broad_synonym: SFV
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Shope fibroma virus
has_related_synonym: Shope fibroma virus SFV

Myxoma virus
type: Class
subclass of: Leporipoxvirus
subclass of: Restriction
  on property: has_part
  some values from: genome of Myxoma virus
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: myxoma virus MYX

H5N1 subtype
type: Class
subclass of: Influenza A virus
subclass of: Restriction
  on property: has_part
  some values from: genome of H5N1 subtype
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: H5N1

Herpesviridae
type: Class
subclass of: dsDNA viruses, no RNA stage
subclass of: Restriction
  on property: has_part
  some values from: genome of Herpesviridae
editor preferred label: Herpesviridae
imported from: ncbitaxon.owl
has_rank: NCBITaxon family
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy

Alphaherpesvirinae
type: Class
subclass of: Herpesviridae
subclass of: Restriction
  on property: has_part
  some values from: genome of Alphaherpesvirinae
imported from: ncbitaxon.owl
has_rank: NCBITaxon subfamily
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy

Simplexvirus
type: Class
subclass of: Alphaherpesvirinae
subclass of: Restriction
  on property: has_part
  some values from: genome of Simplexvirus
imported from: ncbitaxon.owl
has_rank: NCBITaxon genus
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy

Human alphaherpesvirus 1
type: Class
subclass of: Simplexvirus
subclass of: Restriction
  on property: has_part
  some values from: genome of Human herpesvirus 1
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_broad_synonym: HSV-1
has_broad_synonym: HSV1
数据库_交叉_引用: GC_ID:1
has_exact_synonym: Herpes simplex virus type 1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Herpes simplex virus 1
has_related_synonym: Human Herpesvirus-1
has_related_synonym: Human herpesvirus 1
has_related_synonym: Human herpesvirus type 1
has_related_synonym: herpes simplex virus 1 HSV-1
has_related_synonym: herpes simplex virus HSV-1
has_related_synonym: herpes simplex virus type 1 HSV-1
has_related_synonym: herpes simplex virus type 1 HSV1
has_related_synonym: herpes simplex virus type-1 HSV-1
id: NCBITaxon:10298
label: Human herpesvirus 1

Axiom
annotated source: Human alphaherpesvirus 1
annotated property: has_broad_synonym
annotated target: HSV1
has_synonym_type: Label appended to organism-specific terms in place of scientific name

Herpes simplex virus (type 1 / strain 17)
type: Class
subclass of: Human alphaherpesvirus 1
subclass of: Restriction
  on property: has_part
  some values from: genome of Herpes simplex virus (type 1 / strain 17)
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:1
has_exact_synonym: HSV1(17)
有_obo_命名空间: ncbi_taxonomy
id: NCBITaxon:10299
label: Herpes simplex virus type 1 strain 17

Axiom
annotated source: Herpes simplex virus (type 1 / strain 17)
annotated property: has_exact_synonym
annotated target: HSV1(17)
数据库_交叉_引用: PRO:DAN
has_synonym_type: Label appended to organism-specific terms in place of scientific name

Human herpesvirus 2
type: Class
subclass of: Simplexvirus
subclass of: Restriction
  on property: has_part
  some values from: genome of Human herpesvirus 2
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_broad_synonym: HSV2
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Herpes simplex virus (type 2)
has_related_synonym: Herpes simplex virus 2
has_related_synonym: Herpes simplex virus type 2
has_related_synonym: herpes simplex virus type 2 HSV-2

Varicellovirus
type: Class
subclass of: Alphaherpesvirinae
subclass of: Restriction
  on property: has_part
  some values from: genome of Varicellovirus
imported from: ncbitaxon.owl
has_rank: NCBITaxon genus
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy

Bovine alphaherpesvirus 1
type: Class
subclass of: Varicellovirus
subclass of: Restriction
  on property: has_part
  some values from: genome of Bovine herpesvirus 1
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_alternative_id: NCBITaxon:11265
has_alternative_id: NCBITaxon:12738
has_broad_synonym: BoHV-1
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Bovine herpesvirus 1
has_related_synonym: Bovine herpesvirus type 1
has_related_synonym: Bovine herpesvirus-1
has_related_synonym: Bovine rhinotracheitis virus
has_related_synonym: Infectious bovine rhinotracheitis virus
has_related_synonym: bovine herpesvirus 1 BHV 1
has_related_synonym: bovine herpesvirus 1 BHV-1
has_related_synonym: bovine herpesvirus 1 BHV1
has_related_synonym: bovine herpesvirus BHV-1
has_related_synonym: bovine herpesvirus type 1 BHV-1
has_related_synonym: bovine herpesvirus type-1 BHV-1
has_related_synonym: infectious bovine rhinotracheitis virus BHV-1
label: Bovine herpesvirus 1

Equid alphaherpesvirus 1
type: Class
subclass of: Varicellovirus
subclass of: Restriction
  on property: has_part
  some values from: genome of Equid herpesvirus 1
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_broad_synonym: EHV-1
数据库_交叉_引用: GC_ID:1
has_exact_synonym: Equine herpesvirus 1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Equid herpesvirus 1
has_related_synonym: Equine herpesvirus type 1
has_related_synonym: Equine herpesvirus-1
has_related_synonym: equine abortion virus
has_related_synonym: equine herpesvirus 1 EHV-1
has_related_synonym: equine herpesvirus type 1 EHV-1
has_related_synonym: equine herpesvirus type 1 EVH-1
has_related_synonym: equine herpesvirus type-1
label: Equid herpesvirus 1

Felid alphaherpesvirus 1
type: Class
subclass of: Varicellovirus
subclass of: Restriction
  on property: has_part
  some values from: genome of Felid herpesvirus 1
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Felid herpesvirus 1
has_related_synonym: Feline herpesvirus 1
has_related_synonym: Feline herpesvirus type 1
has_related_synonym: Feline viral rhinotracheitis virus
has_related_synonym: feline herpesvirus
has_related_synonym: feline herpesvirus type 1 FHV-1
has_related_synonym: feline herpesvirus-1
has_related_synonym: feline herpesvirus-1 FHV-1
id: NCBITaxon:10334
label: Felid herpesvirus 1

Human herpesvirus 3
type: Class
subclass of: Varicellovirus
subclass of: Restriction
  on property: has_part
  some values from: genome of Human herpesvirus 3
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_broad_synonym: HHV-3
has_broad_synonym: VZV
数据库_交叉_引用: GC_ID:1
has_exact_synonym: Varicella-zoster virus
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Human alphaherpesvirus 3
has_related_synonym: Varicella Zoster Virus
has_related_synonym: varicella zoster virus VZV
has_related_synonym: varicella-zoster virus VZV

Suid alphaherpesvirus 1
type: Class
subclass of: Varicellovirus
subclass of: Restriction
  on property: has_part
  some values from: genome of Suid herpesvirus 1
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_alternative_id: NCBITaxon:44156
has_broad_synonym: PRV
数据库_交叉_引用: GC_ID:1
has_exact_synonym: Pseudorabies virus
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Alphaherpesvirus pseudorabies virus PRV
has_related_synonym: Aujeszky's disease virus
has_related_synonym: Pseudorabies Virus PRV
has_related_synonym: Pseudorabies virus
has_related_synonym: Suid herpesvirus 1
has_related_synonym: Suid herpesvirus type 1
label: Suid herpesvirus 1

Gallid alphaherpesvirus 1
type: Class
subclass of: Alphaherpesvirinae
subclass of: Restriction
  on property: has_part
  some values from: genome of Gallid herpesvirus 1
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_alternative_id: NCBITaxon:10342
has_alternative_id: NCBITaxon:12743
has_alternative_id: NCBITaxon:46620
has_broad_synonym: GaHV-1
has_broad_synonym: ILTV
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Avian infectious laryngotracheitis virus
has_related_synonym: Gallid herpesvirus 1
has_related_synonym: Gallid herpesvirus type 1
has_related_synonym: Infectious laryngotracheitis virus
has_related_synonym: Laryngotracheitis virus
has_related_synonym: infectious laryngotracheitis virus ILTV
label: Gallid herpesvirus 1

Gallid herpesvirus 2
type: Class
subclass of: Alphaherpesvirinae
subclass of: Restriction
  on property: has_part
  some values from: genome of Gallid herpesvirus 2
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_alternative_id: NCBITaxon:38013
has_alternative_id: NCBITaxon:39111
has_alternative_id: NCBITaxon:43684
has_broad_synonym: GaHV-2
has_broad_synonym: MDV1
数据库_交叉_引用: GC_ID:1
has_exact_synonym: Marek disease virus type 1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Gallid herpesvirus 1 (serotype 1)
has_related_synonym: Gallid herpesvirus type 2
has_related_synonym: Marek disease virus
has_related_synonym: Marek's disease herpesvirus
has_related_synonym: Marek's disease herpesvirus 1
has_related_synonym: Marek's disease virus
has_related_synonym: Marek's disease virus (MDV)
has_related_synonym: Marek's disease virus MDV
has_related_synonym: Marek's disease virus MDV1
has_related_synonym: Marek's disease virus serotype 1 MDV-1
has_related_synonym: Marek's disease virus type 1
has_related_synonym: Marek's disease virus type 1 MDV1

Obtectomera
type: Class
subclass of: Holometabola
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy

African swine fever virus
type: Class
subclass of: dsDNA viruses, no RNA stage
subclass of: Restriction
  on property: has_part
  some values from: genome of African swine fever virus
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_broad_synonym: ASFV
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: African swine fever virus ASF
has_related_synonym: African swine fever virus ASFV
has_related_synonym: African swine fever virus, ASFV

Porcine parvovirus
type: Class
subclass of: Viruses
imported from: ncbitaxon.owl
has_broad_synonym: PPV
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: porcine parvovirus PPV

Rotavirus
type: Class
subclass of: Viruses
subclass of: Restriction
  on property: has_part
  some values from: genome of Rotavirus
imported from: ncbitaxon.owl
has_rank: NCBITaxon genus
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Rotaviruses

Alphavirus
type: Class
subclass of: ssRNA positive-strand viruses, no DNA stage
subclass of: Restriction
  on property: has_part
  some values from: genome of Alphavirus
imported from: ncbitaxon.owl
has_rank: NCBITaxon genus
数据库_交叉_引用: GC_ID:1
has_exact_synonym: arboviruses group A
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Alphaviridae

Ross River virus
type: Class
subclass of: Alphavirus
subclass of: Restriction
  on property: has_part
  some values from: genome of Ross River virus
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_broad_synonym: RRV
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy

Sindbis virus
type: Class
subclass of: WEEV complex
subclass of: Restriction
  on property: has_part
  some values from: genome of Sindbis virus
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Sindbis virus dsSIN

Venezuelan equine encephalitis virus
type: Class
subclass of: Alphavirus
subclass of: Restriction
  on property: has_part
  some values from: genome of Venezuelan equine encephalitis virus
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_broad_synonym: VEE
has_broad_synonym: VEEV
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Venezuelan equine encephalitis VEE
has_related_synonym: Venezuelan equine encephalitis virus VEE
has_related_synonym: Venezuelan equine encephalomyelitis virus

Western equine encephalitis virus
type: Class
subclass of: WEEV complex
subclass of: Restriction
  on property: has_part
  some values from: genome of Western equine encephalomyelitis virus
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Western equine encephaliomyelitis virus
has_related_synonym: Western equine encephalitis virus
has_related_synonym: Western equine encephalomyelitis virus
label: Western equine encephalomyelitis virus

Flaviviridae
type: Class
subclass of: ssRNA positive-strand viruses, no DNA stage
subclass of: Restriction
  on property: has_part
  some values from: genome of Flaviviridae
imported from: ncbitaxon.owl
has_rank: NCBITaxon family
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Flavivirus (arbovirus group B)

Flavivirus
type: Class
subclass of: Flaviviridae
subclass of: Restriction
  on property: has_part
  some values from: genome of Flavivirus
imported from: ncbitaxon.owl
has_rank: NCBITaxon genus
数据库_交叉_引用: GC_ID:1
has_exact_synonym: arboviruses group B
有_obo_命名空间: ncbi_taxonomy

West Nile virus
type: Class
subclass of: Flavivirus
subclass of: Restriction
  on property: has_part
  some values from: genome of West Nile virus
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_broad_synonym: WNV
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: WNV-
id: NCBITaxon:11082

Axiom
annotated source: West Nile virus
annotated property: has_related_synonym
annotated target: WNV-
数据库_交叉_引用: PRO:DAN
has_synonym_type: Unique short label for PRO terms for display purposes; based on orthology

Tick-borne encephalitis virus
type: Class
subclass of: Flavivirus
subclass of: Restriction
  on property: has_part
  some values from: genome of Tick-borne encephalitis virus
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_broad_synonym: TBEV
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: FSME virus
has_related_synonym: tick-borne encephalitis virus TBE virus
has_related_synonym: tick-borne encephalitis virus TBEV

Yellow fever virus
type: Class
subclass of: Flavivirus
subclass of: Restriction
  on property: has_part
  some values from: genome of Yellow fever virus
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_broad_synonym: YFV
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Flavivirus febricis
has_related_synonym: yellow fever virus YFV

Classical swine fever virus
type: Class
subclass of: Flaviviridae
subclass of: Restriction
  on property: has_part
  some values from: genome of Classical swine fever virus
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_alternative_id: NCBITaxon:12625
has_alternative_id: NCBITaxon:54314
数据库_交叉_引用: GC_ID:1
数据库_交叉_引用: PMID:7747470
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Hog cholera virus
has_related_synonym: Pestivirus type 2
has_related_synonym: classical swine fever virus CSFV
has_related_synonym: hog cholera virus HCV
has_related_synonym: swine fever virus

Classical swine fever virus - Brescia
type: Class
subclass of: Classical swine fever virus
subclass of: Restriction
  on property: has_part
  some values from: genome of Classical swine fever virus - Brescia
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Hog cholera virus (strain Brescia)
has_related_synonym: Hog cholera virus - Brescia

Feline infectious peritonitis virus
type: Class
subclass of: Alphacoronavirus 1
subclass of: Restriction
  on property: has_part
  some values from: genome of Feline infectious peritonitis virus
imported from: ncbitaxon.owl
has_broad_synonym: FIPV
数据库_交叉_引用: GC_ID:1
has_exact_synonym: FIPV
有_obo_命名空间: ncbi_taxonomy

Porcine respiratory coronavirus
type: Class
subclass of: Alphacoronavirus 1
subclass of: Restriction
  on property: has_part
  some values from: genome of Porcine respiratory coronavirus
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: porcine respiratory coronavirus PRCV
has_related_synonym: porcine respiratory virus

Bartonella birtlesii
type: Class
subclass of: Bartonella
subclass of: Restriction
  on property: has_part
  some values from: genome of Bartonella birtlesii
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:11155970
有_obo_命名空间: ncbi_taxonomy

pseudomallei group
type: Class
subclass of: Burkholderiales
subclass of: Restriction
  on property: has_part
  some values from: genome of pseudomallei group
imported from: ncbitaxon.owl
has_rank: NCBITaxon species group
数据库_交叉_引用: GC_ID:11
有_obo_命名空间: ncbi_taxonomy

Mononegavirales
type: Class
subclass of: ssRNA negative-strand viruses
subclass of: Restriction
  on property: has_part
  some values from: genome of Mononegavirales
imported from: ncbitaxon.owl
has_rank: NCBITaxon order
数据库_交叉_引用: GC_ID:1
has_exact_synonym: negative-sense genome single-stranded RNA viruses
有_obo_命名空间: ncbi_taxonomy

Paramyxoviridae
type: Class
subclass of: Mononegavirales
subclass of: Restriction
  on property: has_part
  some values from: genome of Paramyxoviridae
imported from: ncbitaxon.owl
has_rank: NCBITaxon family
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy

Paramyxovirinae
type: Class
subclass of: Paramyxoviridae
subclass of: Restriction
  on property: has_part
  some values from: genome of Paramyxovirinae
imported from: ncbitaxon.owl
has_rank: NCBITaxon subfamily
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy

Newcastle disease virus
type: Class
subclass of: Paramyxovirinae
subclass of: Restriction
  on property: has_part
  some values from: genome of Newcastle disease virus
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_broad_synonym: NDV
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Avian paramyxovirus type 1
has_related_synonym: Newcastle disease virus NDV
has_related_synonym: avian paramyxovirus 1

Human parainfluenza virus 3
type: Class
subclass of: Paramyxovirinae
subclass of: Restriction
  on property: has_part
  some values from: genome of Human parainfluenza virus 3
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_alternative_id: NCBITaxon:11202
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Human parainfluenza 3 virus
has_related_synonym: Human parainfluenza virus type 3
has_related_synonym: Parainfluenza virus type 3
has_related_synonym: human parainfluenza virus 3 HPIV3
has_related_synonym: human parainfluenza virus type 3 PIV3
has_related_synonym: parainfluenza virus type 3 PIV-3

Measles morbillivirus
type: Class
subclass of: Paramyxovirinae
subclass of: Restriction
  on property: has_part
  some values from: genome of Measles virus
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_alternative_id: NCBITaxon:11230
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Cell-associated subacute sclerosing panencephalitis
has_related_synonym: Measles virus
has_related_synonym: Subacute sclerosing panencephalitis virus
has_related_synonym: measles virus MV
has_related_synonym: rougeole virus
has_related_synonym: rubeola virus
has_related_synonym: subacute sclerose panencephalitis virus
has_related_synonym: subacute sclerosing panencephalitis virus, SSPEV
label: Measles virus

Pneumoviridae
type: Class
subclass of: Paramyxoviridae
subclass of: Restriction
  on property: has_part
  some values from: genome of Pneumovirinae
imported from: ncbitaxon.owl
has_rank: NCBITaxon family
has_rank: NCBITaxon subfamily
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Pneumovirinae
label: Pneumovirinae

Pneumovirus
type: Class
subclass of: Pneumoviridae
subclass of: Restriction
  on property: has_part
  some values from: genome of Pneumovirus
imported from: ncbitaxon.owl
has_rank: NCBITaxon genus
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy

Bovine orthopneumovirus
type: Class
subclass of: Pneumovirus
subclass of: Orthopneumovirus
subclass of: Restriction
  on property: has_part
  some values from: genome of Bovine respiratory syncytial virus
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_alternative_id: NCBITaxon:12604
has_broad_synonym: BRS
has_broad_synonym: BRSV
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Bovine respiratory syncytial virus
has_related_synonym: bovine RSV
has_related_synonym: bovine respiratory syncytial virus BRSV
label: Bovine respiratory syncytial virus

Human orthopneumovirus
type: Class
subclass of: Orthopneumovirus
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_broad_synonym: HRSV
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Human respiratory syncytial virus
has_related_synonym: human RSV

Human respiratory syncytial virus A2
type: Class
subclass of: Pneumovirus
subclass of: Restriction
  on property: has_part
  some values from: genome of Human respiratory syncytial virus A2
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Human respiratory syncytial virus (strain A2)

Rhabdoviridae
type: Class
subclass of: Mononegavirales
subclass of: Restriction
  on property: has_part
  some values from: genome of Rhabdoviridae
imported from: ncbitaxon.owl
has_rank: NCBITaxon family
数据库_交叉_引用: GC_ID:1
数据库_交叉_引用: PMID:16186241
有_obo_命名空间: ncbi_taxonomy

Infectious hematopoietic necrosis virus
type: Class
subclass of: Rhabdoviridae
subclass of: Restriction
  on property: has_part
  some values from: genome of Infectious hematopoietic necrosis virus
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_broad_synonym: IHNV
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Infectious haematopoietic necrosis virus

Rabies lyssavirus
type: Class
subclass of: Rhabdoviridae
subclass of: Restriction
  on property: has_part
  some values from: genome of Rabies virus
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Rabies virus
label: Rabies virus

unidentified influenza virus
type: Class
subclass of: ssRNA negative-strand viruses
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Influenza virus
has_related_synonym: Influenza virus sp.
has_related_synonym: Influenzavirus
has_related_synonym: avian influenza virus

Influenza A virus
type: Class
subclass of: Influenzavirus A
subclass of: ssRNA negative-strand viruses
subclass of: Restriction
  on property: has_part
  some values from: genome of Influenza A virus
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_broad_synonym: FLUAV
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Influenza virus type A
has_related_synonym: influenza A virus INF A
id: NCBITaxon:11320

Bunyaviridae
type: Class
subclass of: ssRNA negative-strand viruses
subclass of: Restriction
  on property: has_part
  some values from: genome of Bunyaviridae
imported from: ncbitaxon.owl
has_rank: NCBITaxon family
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy

Chlamydophila pneumoniae CWL029
type: Class
subclass of: Chlamydia pneumoniae
subclass of: Restriction
  on property: has_part
  some values from: genome of Chlamydophila pneumoniae CWL029
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:10192388
数据库_交叉_引用: PMID:10871362
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Chlamydia pneumoniae CWL029

La Crosse virus
type: Class
subclass of: Bunyaviridae
subclass of: Restriction
  on property: has_part
  some values from: genome of La Crosse virus
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Bunyavirus la crosse

Rift Valley fever virus
type: Class
subclass of: Bunyaviridae
subclass of: Restriction
  on property: has_part
  some values from: genome of Rift Valley fever virus
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_broad_synonym: RVFV
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy

Hantaan virus
type: Class
subclass of: Bunyaviridae
subclass of: Restriction
  on property: has_part
  some values from: genome of Hantaan virus
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Korean hemorrhagic fever virus

Lentivirus
type: Class
subclass of: Viruses
subclass of: Restriction
  on property: has_part
  some values from: genome of Lentivirus
imported from: ncbitaxon.owl
has_rank: NCBITaxon genus
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Lentivirinae

Primate lentivirus group
type: Class
subclass of: Lentivirus
subclass of: Retro-transcribing viruses
subclass of: Restriction
  on property: has_part
  some values from: genome of Primate lentivirus group
editor preferred label: Primate lentivirus group
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Primate immunodeficiency viruses

Feline immunodeficiency virus
type: Class
subclass of: Lentivirus
subclass of: Restriction
  on property: has_part
  some values from: genome of Feline immunodeficiency virus
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_broad_synonym: FIV
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: feline immunodeficiency virus FIV

Human immunodeficiency virus 1
type: Class
subclass of: Primate lentivirus group
subclass of: Restriction
  on property: has_part
  some values from: genome of Human immunodeficiency virus 1
editor preferred label: Human immunodeficiency virus 1
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_broad_synonym: HIV
has_broad_synonym: HIV-1
has_broad_synonym: HIV1
has_broad_synonym: LAV-1
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: AIDS virus
has_related_synonym: Human immundeficiency virus type 1
has_related_synonym: Human immunodeficiencey virus type 1
has_related_synonym: Human immunodeficiency virus type 1
has_related_synonym: human immunodeficiency virus 1 HIV-1
has_related_synonym: human immunodeficiency virus HIV-1
has_related_synonym: human immunodeficiency virus type 1 ,HIV-1
has_related_synonym: human immunodeficiency virus type 1 HIV 1
has_related_synonym: human immunodeficiency virus type 1 HIV-1
has_related_synonym: human immunodeficiency virus type 1 HIV1
has_related_synonym: human immunodeficiency virus type 1, HIV-1
has_related_synonym: human immunodeficiency virus type I HIV-1
has_related_synonym: human immunodeficiency virus type-1 HIV-1
has_related_synonym: human immunodeficiency virus-1 HIV-1

Simian immunodeficiency virus
type: Class
subclass of: Primate lentivirus group
subclass of: Restriction
  on property: has_part
  some values from: genome of Simian immunodeficiency virus
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_alternative_id: NCBITaxon:11677
has_alternative_id: NCBITaxon:11739
has_alternative_id: NCBITaxon:11740
has_broad_synonym: CIV
has_broad_synonym: SIV
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Chimpanzee immunodeficiency virus
has_related_synonym: Chimpanzee immunodeficiency virus (SIV(CPZ))
has_related_synonym: Simian immunodeficiency virus SIVcpz
has_related_synonym: simian immunodeficiency virus SIV
has_related_synonym: simian immunodeficiency virus, SIV
has_related_synonym: simian immunodeficiency viruses SIV

Hyperotreti
type: Class
subclass of: Vertebrata <Metazoa>
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:1
has_exact_synonym: fish
has_exact_synonym: fishes
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Agnatha

Euteleostomi
type: Class
subclass of: Vertebrata <Metazoa>
editor preferred label: Euteleostomi
alternative term: bony vertebrates
imported from: ncbitaxon.owl
has_alternative_id: NCBITaxon:40673
数据库_交叉_引用: GC_ID:1
has_exact_synonym: bony vertebrates
有_obo_命名空间: ncbi_taxonomy

Brucellaceae
type: Class
subclass of: Bacteria
有_obo_命名空间: ncbi_taxonomy
id: NCBITaxon:118882

Legionellales
type: Class
subclass of: Gammaproteobacteria
subclass of: Restriction
  on property: has_part
  some values from: genome of Legionellales
imported from: ncbitaxon.owl
has_rank: NCBITaxon order
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:16280474
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Legionellaceae group
has_related_synonym: Legionellales Garrity et al. 2005

Francisella tularensis subsp. holarctica
type: Class
subclass of: Francisella tularensis
subclass of: Restriction
  on property: has_part
  some values from: genome of Francisella tularensis subsp. holarctica
imported from: ncbitaxon.owl
has_rank: NCBITaxon subspecies
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:5462048
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Francisella tularensis var. palaearctica

Ecdysozoa
type: Class
subclass of: Bilateria
editor preferred label: Ecdysozoa
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy

Encephalomyocarditis virus
type: Class
subclass of: ssRNA positive-strand viruses, no DNA stage
subclass of: Restriction
  on property: has_part
  some values from: genome of Encephalomyocarditis virus
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_broad_synonym: EMCV
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: encephalomyocarditis virus EMCV
has_related_synonym: encephalomyocarditis virus, EMCV

Nipah henipavirus
type: Class
subclass of: Paramyxovirinae
subclass of: Restriction
  on property: has_part
  some values from: genome of Nipah virus
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
id: NCBITaxon:121791
label: Nipah virus

Proteobacteria
type: Class
subclass of: Bacteria
subclass of: Restriction
  on property: has_part
  some values from: genome of Proteobacteria
imported from: ncbitaxon.owl
has_rank: NCBITaxon phylum
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:11321122
数据库_交叉_引用: PMID:11542017
数据库_交叉_引用: PMID:11837318
数据库_交叉_引用: PMID:16280474
数据库_交叉_引用: PMID:26654112
has_exact_synonym: purple bacteria
has_exact_synonym: purple bacteria and relatives
has_exact_synonym: purple non-sulfur bacteria
has_exact_synonym: purple photosynthetic bacteria
has_exact_synonym: purple photosynthetic bacteria and relatives
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Alphaproteobacteraeota
has_related_synonym: proteobacteria

Neisseria meningitidis MC58
type: Class
subclass of: Neisseria meningitidis
subclass of: Restriction
  on property: has_part
  some values from: genome of Neisseria meningitidis MC58
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:10710307
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Neisseria meningitidis serogroup B strain MC58
id: NCBITaxon:122586

Neisseria meningitidis Z2491
type: Class
subclass of: Neisseria meningitidis
subclass of: Restriction
  on property: has_part
  some values from: genome of Neisseria meningitidis Z2491
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Neisseria meningitidis serogroup A strain Z2491

Gammaproteobacteria
type: Class
subclass of: Proteobacteria
subclass of: Restriction
  on property: has_part
  some values from: genome of Gammaproteobacteria
imported from: ncbitaxon.owl
has_rank: NCBITaxon class
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:16280474
数据库_交叉_引用: PMID:23334881
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Gammaproteobacteria Garrity et al. 2005
has_related_synonym: Proteobacteria gamma subdivision
has_related_synonym: Purple bacteria, gamma subdivision
has_related_synonym: g-proteobacteria
has_related_synonym: gamma proteobacteria
has_related_synonym: gamma subdivision
has_related_synonym: gamma subgroup

Firmicutes
type: Class
subclass of: Terrabacteria group
subclass of: Restriction
  on property: has_part
  some values from: genome of Firmicutes
imported from: ncbitaxon.owl
has_rank: NCBITaxon phylum
has_alternative_id: NCBITaxon:31968
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:10555317
数据库_交叉_引用: PMID:11034484
数据库_交叉_引用: PMID:11542017
数据库_交叉_引用: PMID:15143038
数据库_交叉_引用: PMID:25403554
数据库_交叉_引用: PMID:26654112
has_exact_synonym: Gram-positive bacteria
has_exact_synonym: low G+C Gram-positive bacteria
has_exact_synonym: low GC Gram+
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Bacillaeota
has_related_synonym: Bacillus/Clostridium group
has_related_synonym: Clostridium group firmicutes
has_related_synonym: Firmacutes
has_related_synonym: Gram positive bacteria
has_related_synonym: Low G+C firmicutes
has_related_synonym: clostridial firmicutes
has_related_synonym: firmicutes

Chicken anemia virus
type: Class
subclass of: Circoviridae
subclass of: Restriction
  on property: has_part
  some values from: genome of Chicken anemia virus
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_broad_synonym: CAV
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Chicken anaemia virus
has_related_synonym: Chicken infectious anemia virus
has_related_synonym: chicken anaemia agent CAA
has_related_synonym: chicken anaemia agent virus CAA
has_related_synonym: chicken anemia virus CAV
has_related_synonym: chicken anemia virus, CAV
has_related_synonym: chiken anemia agent virus

Ectromelia virus
type: Class
subclass of: Orthopoxvirus
subclass of: Restriction
  on property: has_part
  some values from: genome of Ectromelia virus
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Ectromelia mousepox virus
has_related_synonym: mousepox
has_related_synonym: mousepox virus

Human immunodeficiency virus
type: Class
subclass of: Lentivirus
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_broad_synonym: HIV
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: AIDS virus

Staphylococcus aureus
type: Class
subclass of: Bacillales
subclass of: Restriction
  on property: has_part
  some values from: genome of Staphylococcus aureus
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_alternative_id: NCBITaxon:325213
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:8573498
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Micrococcus aureus
has_related_synonym: Micrococcus pyogenes
has_related_synonym: Staph-
has_related_synonym: Staphilococcus aureus
has_related_synonym: Staphlococcus pyogenes citreus
has_related_synonym: Staphylococcus pyogenes aureus
has_related_synonym: Staphylococus aureus
has_related_synonym: Streptococcus aureus
id: NCBITaxon:1280

Axiom
annotated source: Staphylococcus aureus
annotated property: has_related_synonym
annotated target: Staph-
数据库_交叉_引用: PRO:DAN
has_synonym_type: Unique short label for PRO terms for display purposes; based on orthology

Streptococcus
type: Class
subclass of: Lactobacillales
subclass of: Restriction
  on property: has_part
  some values from: genome of Streptococcus
imported from: ncbitaxon.owl
has_rank: NCBITaxon genus
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:10555340
数据库_交叉_引用: PMID:14657115
数据库_交叉_引用: PMID:1720654
数据库_交叉_引用: PMID:19620365
数据库_交叉_引用: PMID:19880633
数据库_交叉_引用: PMID:7537076
数据库_交叉_引用: PMID:8995803
有_obo_命名空间: ncbi_taxonomy

Streptococcus agalactiae
type: Class
subclass of: Streptococcus
subclass of: Restriction
  on property: has_part
  some values from: genome of Streptococcus agalactiae
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_alternative_id: NCBITaxon:76757
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:15774692
数据库_交叉_引用: PMID:8995807
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Streptoccocus de la mammite
has_related_synonym: Streptococcus agalactiae contagiosae
has_related_synonym: Streptococcus difficile
has_related_synonym: Streptococcus difficilis
has_related_synonym: Streptococcus mastitidis

Streptococcus pneumoniae
type: Class
subclass of: Streptococcus
subclass of: Restriction
  on property: has_part
  some values from: genome of Streptococcus pneumoniae
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:11
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Diplococcus pneumoniae
has_related_synonym: Micrococcus pneumoniae

Streptococcus pyogenes
type: Class
subclass of: Streptococcus
subclass of: Restriction
  on property: has_part
  some values from: genome of Streptococcus pyogenes
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:11
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Micrococcus scarlatinae
has_related_synonym: Streptococcus erysipelatos
has_related_synonym: Streptococcus hemolyticus
has_related_synonym: Streptococcus pyrogenes
has_related_synonym: Streptococcus scarlatinae

Streptococcus equi
type: Class
subclass of: Streptococcus
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:11
有_obo_命名空间: ncbi_taxonomy

Burkholderia mallei
type: Class
subclass of: pseudomallei group
subclass of: Restriction
  on property: has_part
  some values from: genome of Burkholderia mallei
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:12734250
数据库_交叉_引用: PMID:1283774
数据库_交叉_引用: PMID:16558776
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Acinetobacter mallei
has_related_synonym: Actinobacillus mallei
has_related_synonym: Bacillus mallei
has_related_synonym: Loefferella mallei
has_related_synonym: Malleomyces mallei
has_related_synonym: Pfeifferella mallei
has_related_synonym: Pseudomonas mallei

Enterococcus
type: Class
subclass of: Lactobacillales
subclass of: Restriction
  on property: has_part
  some values from: genome of Enterococcus
imported from: ncbitaxon.owl
has_rank: NCBITaxon genus
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:8427810
数据库_交叉_引用: PMID:9103648
有_obo_命名空间: ncbi_taxonomy

Enterococcus faecalis
type: Class
subclass of: Enterococcus
subclass of: Restriction
  on property: has_part
  some values from: genome of Enterococcus faecalis
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_alternative_id: NCBITaxon:1219670
数据库_交叉_引用: GC_ID:11
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Enterococcus feacalis
has_related_synonym: Enterococcus proteiformis
has_related_synonym: Enterocoque
has_related_synonym: Micrococcus ovalis
has_related_synonym: Micrococcus zymogenes
has_related_synonym: Streptococcus faecalis
has_related_synonym: Streptococcus glycerinaceus
has_related_synonym: Streptococcus liquefaciens
id: NCBITaxon:1351

Enterococcus faecium
type: Class
subclass of: Enterococcus
subclass of: Restriction
  on property: has_part
  some values from: genome of Enterococcus faecium
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:11
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Streptococcus faecium
id: NCBITaxon:1352

Neisseria meningitidis serogroup C
type: Class
subclass of: Neisseria meningitidis
subclass of: Restriction
  on property: has_part
  some values from: genome of Neisseria meningitidis serogroup C
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Neisseria meningitidis (serogroup C)

Spirochaetales
type: Class
subclass of: Bacteria
subclass of: Restriction
  on property: has_part
  some values from: genome of Spirochaetales
imported from: ncbitaxon.owl
has_rank: NCBITaxon order
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:11075904
数据库_交叉_引用: PMID:11542017
数据库_交叉_引用: PMID:16558735
数据库_交叉_引用: PMID:1917844
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: spirochetes

Bacillales
type: Class
subclass of: Bacilli
subclass of: Restriction
  on property: has_part
  some values from: genome of Bacillales
imported from: ncbitaxon.owl
has_rank: NCBITaxon order
数据库_交叉_引用: GC_ID:11
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Bacillus/Staphylococcus group

Chlamydophila pneumoniae J138
type: Class
subclass of: Chlamydia pneumoniae
subclass of: Restriction
  on property: has_part
  some values from: genome of Chlamydophila pneumoniae J138
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:10871362
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Chlamydia pneumoniae (strain J138)

Borrelia burgdorferi
type: Class
subclass of: Spirochaetales
subclass of: Spirochaetia
subclass of: Restriction
  on property: has_part
  some values from: genome of Borrelia burgdorferi
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:1380285
数据库_交叉_引用: PMID:1503971
数据库_交叉_引用: PMID:24744012
数据库_交叉_引用: PMID:7699027
数据库_交叉_引用: PMID:7981102
数据库_交叉_引用: PMID:8995796
数据库_交叉_引用: PMID:9336916
has_exact_synonym: Borrelia burgdorferi sensu stricto
has_exact_synonym: Lyme disease spirochete
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Borrelia burdorferi
has_related_synonym: Borrelia burgdorferi
has_related_synonym: Borrelia burgdorffragment
label: Borreliella burgdorferi

Bacillus anthracis
type: Class
subclass of: Bacillales
subclass of: Restriction
  on property: has_part
  some values from: genome of Bacillus anthracis
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_alternative_id: NCBITaxon:1494525
has_alternative_id: NCBITaxon:1494531
has_alternative_id: NCBITaxon:1494577
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:8123566
has_exact_synonym: anthrax
has_exact_synonym: anthrax bacterium
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Bacillus cereus var. anthracis
has_related_synonym: Bacteridium anthracis
has_related_synonym: anthrax-
id: NCBITaxon:1392

Axiom
annotated source: Bacillus anthracis
annotated property: has_related_synonym
annotated target: anthrax-
数据库_交叉_引用: PRO:DAN
has_synonym_type: Unique short label for PRO terms for display purposes; based on orthology

Boreoeutheria
type: Class
subclass of: Amniota
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:1
数据库_交叉_引用: PMID:11743200
数据库_交叉_引用: PMID:11791233
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Boreotheria

Eurotiomycetes
type: Class
subclass of: saccharomyceta
subclass of: Restriction
  on property: has_part
  some values from: genome of Eurotiomycetes
imported from: ncbitaxon.owl
has_rank: NCBITaxon class
has_alternative_id: NCBITaxon:147540
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Loculoascomycetes
has_related_synonym: Plectomycetes
has_related_synonym: bitunicate ascomycetes

Clostridium
type: Class
subclass of: Clostridiales
subclass of: Restriction
  on property: has_part
  some values from: genome of Clostridium
imported from: ncbitaxon.owl
has_rank: NCBITaxon genus
has_alternative_id: NCBITaxon:69207
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:26643615
数据库_交叉_引用: PMID:27488356
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Anaerobacter

Clostridium botulinum
type: Class
subclass of: Clostridium
subclass of: Restriction
  on property: has_part
  some values from: genome of Clostridium botulinum
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_alternative_id: NCBITaxon:29368
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:10028279
数据库_交叉_引用: PMID:15244052
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Bacillus botulinus
has_related_synonym: Bacillus putrificus
has_related_synonym: Botulobacillus botulinus
has_related_synonym: Clostridium putrificum
has_related_synonym: Ermengemillus botulinus
has_related_synonym: Pacinia putrifica

Clostridioides difficile
type: Class
subclass of: Clostridiales
subclass of: Restriction
  on property: has_part
  some values from: genome of [Clostridium] difficile
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_alternative_id: NCBITaxon:1440055
has_alternative_id: NCBITaxon:1581190
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:23834245
数据库_交叉_引用: PMID:27370902
数据库_交叉_引用: PMID:27902176
has_exact_synonym: Clostridium difficile
has_exact_synonym: [Clostridium] difficile
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Bacillus difficilis
has_related_synonym: Clostridium difficile
has_related_synonym: Clostridium difficle
has_related_synonym: Peptoclostridium difficile
label: [Clostridium] difficile

Yersinia enterocolitica subsp. enterocolitica
type: Class
subclass of: Yersinia <bacteria>
imported from: ncbitaxon.owl
has_rank: NCBITaxon subspecies
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:11043982
有_obo_命名空间: ncbi_taxonomy

Clostridium perfringens
type: Class
subclass of: Clostridium
subclass of: Restriction
  on property: has_part
  some values from: genome of Clostridium perfringens
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_alternative_id: NCBITaxon:1683536
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:1374625
数据库_交叉_引用: PMID:184898
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: 'Clostridium plagarum'
has_related_synonym: Bacillus perfringens
has_related_synonym: Bacterium welchii
has_related_synonym: Clostridium plagarum
id: NCBITaxon:1502

Escherichia coli O157:H7 str. EDL933
type: Class
subclass of: Escherichia coli O157:H7
subclass of: Restriction
  on property: has_part
  some values from: genome of Escherichia coli O157:H7 str. EDL933
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Escherichia coli O157:H7 EDL933
has_exact_synonym: Escherichia coli O157:H7 strain EDL933
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Escherichia coli 0157:H7 EDL933

Staphylococcus aureus subsp. aureus Mu50
type: Class
subclass of: Staphylococcus aureus subsp. aureus
subclass of: Restriction
  on property: has_part
  some values from: genome of Staphylococcus aureus subsp. aureus Mu50
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:11418146
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Staphylococcus aureus (strain Mu50 / ATCC 700699)
id: NCBITaxon:158878

Staphylococcus aureus subsp. aureus N315
type: Class
subclass of: Staphylococcus aureus subsp. aureus
subclass of: Restriction
  on property: has_part
  some values from: genome of Staphylococcus aureus subsp. aureus N315
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:11418146
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Staphylococcus aureus (strain N315)
id: NCBITaxon:158879

Streptococcus pyogenes M1 GAS
type: Class
subclass of: Streptococcus pyogenes serotype M1
subclass of: Restriction
  on property: has_part
  some values from: genome of Streptococcus pyogenes M1 GAS
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:11296296
has_exact_synonym: Streptococcus pyogenes (serotype 1 / M1 GAS)
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Streptococcus pyogenes ATCC 700294
has_related_synonym: Streptococcus pyogenes SF370
has_related_synonym: Streptococcus pyogenes strain SF370

Streptococcus pyogenes str. Manfredo
type: Class
subclass of: Streptococcus pyogenes
subclass of: Restriction
  on property: has_part
  some values from: genome of Streptococcus pyogenes str. Manfredo
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:17012393
has_exact_synonym: Streptococcus pyogenes Manfredo
has_exact_synonym: Streptococcus pyogenes strain Manfredo
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Streptococcus pyogenes (serotype 5 / Manfredo)

Human metapneumovirus
type: Class
subclass of: Pneumoviridae
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_broad_synonym: HMPV
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy

Emericella nidulans
type: Class
subclass of: Trichocomaceae
subclass of: Restriction
  on property: has_part
  some values from: genome of Emericella nidulans
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_alternative_id: NCBITaxon:5072
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: A. nidulans
has_related_synonym: Aspergillus nidulans
has_related_synonym: Aspergillus nidulellus
has_related_synonym: Aspergilus nidulans

Xenopsylla cheopis
type: Class
subclass of: Holometabola
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:1
has_exact_synonym: oriental rat flea
有_obo_命名空间: ncbi_taxonomy

Listeria monocytogenes
type: Class
subclass of: Bacillales
subclass of: Restriction
  on property: has_part
  some values from: genome of Listeria monocytogenes
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_alternative_id: NCBITaxon:1634566
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:17773427
数据库_交叉_引用: PMID:1906732
数据库_交叉_引用: PMID:8782698
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Bacterium monocytogenes
has_related_synonym: Bacterium monocytogenes hominis
has_related_synonym: Corynebacterium infantisepticum
has_related_synonym: Corynebacterium parvulum
has_related_synonym: Erysipelothrix monocytogenes
has_related_synonym: Listerella hepatolytica
has_related_synonym: Listeria momocytogenes
has_related_synonym: Lysteria monocytogenes

Yersinia pseudotuberculosis complex
type: Class
subclass of: Yersinia <bacteria>
imported from: ncbitaxon.owl
has_rank: NCBITaxon species group
数据库_交叉_引用: GC_ID:11
有_obo_命名空间: ncbi_taxonomy

Listeria monocytogenes EGD-e
type: Class
subclass of: Listeria monocytogenes
subclass of: Restriction
  on property: has_part
  some values from: genome of Listeria monocytogenes EGD-e
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:11679669
has_exact_synonym: Listeria monocytogenes EGDe
has_exact_synonym: Listeria monocytogenes str. EGD-e
has_exact_synonym: Listeria monocytogenes strain EGD-e
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Listeria monocytogenes ATCC BAA-679

Streptococcus pneumoniae TIGR4
type: Class
subclass of: Streptococcus pneumoniae
subclass of: Restriction
  on property: has_part
  some values from: genome of Streptococcus pneumoniae TIGR4
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:11463916
有_obo_命名空间: ncbi_taxonomy
id: NCBITaxon:170187

Leptospira
type: Class
subclass of: Spirochaetia
imported from: ncbitaxon.owl
has_rank: NCBITaxon genus
has_alternative_id: NCBITaxon:29512
has_alternative_id: NCBITaxon:29514
has_alternative_id: NCBITaxon:29516
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:10425768
数据库_交叉_引用: PMID:1581182
数据库_交叉_引用: PMID:19868121
数据库_交叉_引用: PMID:9103653
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Ancona
has_related_synonym: Canela
has_related_synonym: Jequitaia

Streptococcus pneumoniae R6
type: Class
subclass of: Streptococcus pneumoniae
subclass of: Restriction
  on property: has_part
  some values from: genome of Streptococcus pneumoniae R6
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:11544234
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
has_related_synonym: Streptococcus pneumoniae str. R6
id: NCBITaxon:171101

Corynebacterium diphtheriae
type: Class
subclass of: Corynebacteriales
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:7729671
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Bacillus diphtheriae
has_related_synonym: Bacterium diphtheriae
has_related_synonym: Microsporon diphthericum
has_related_synonym: Microsporon diphtheriticum
has_related_synonym: Mycobacterium diphtheriae
has_related_synonym: Pacinia loeffleri

Mycobacterium
type: Class
subclass of: Corynebacteriales
subclass of: Restriction
  on property: has_part
  some values from: genome of Mycobacterium
imported from: ncbitaxon.owl
has_rank: NCBITaxon genus
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:1380284
数据库_交叉_引用: PMID:1581193
数据库_交叉_引用: PMID:16014496
数据库_交叉_引用: PMID:1883713
数据库_交叉_引用: PMID:2275850
数据库_交叉_引用: PMID:29497402
数据库_交叉_引用: PMID:7547284
数据库_交叉_引用: PMID:7547304
数据库_交叉_引用: PMID:7907223
数据库_交叉_引用: PMID:8863452
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Mycobacterium Lehmann and Neumann 1896

Mycobacterium avium
type: Class
subclass of: Mycobacterium
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:2397193
数据库_交叉_引用: PMID:8347508
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Bacillus tuberculosis gallinarum
has_related_synonym: Mycobacterium tuberculosis avium
has_related_synonym: Mycobacterium tuberculosis typus gallinaceus
has_related_synonym: Tuberculose des oiseaux

Mycobacterium tuberculosis
type: Class
subclass of: Mycobacterium
subclass of: Restriction
  on property: has_part
  some values from: genome of Mycobacterium tuberculosis
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:29205127
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Bacillus tuberculosis
has_related_synonym: Bacterium tuberculosis
has_related_synonym: Mtub-
has_related_synonym: Mycobacterium tuberculosis typus humanus
has_related_synonym: Mycobacterium tuberculosis var. hominis
id: NCBITaxon:1773

Axiom
annotated source: Mycobacterium tuberculosis
annotated property: has_related_synonym
annotated target: Mtub-
数据库_交叉_引用: PRO:DAN
has_synonym_type: Unique short label for PRO terms for display purposes; based on orthology

Francisella tularensis subsp. tularensis SCHU S4
type: Class
subclass of: Francisella tularensis
subclass of: Restriction
  on property: has_part
  some values from: genome of Francisella tularensis subsp. tularensis SCHU S4
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Francisella tularensis subsp. tularensis str. SCHU S4
has_exact_synonym: Francisella tularensis subsp. tularensis strain SCHU S4
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Francisella tularensis Biovar A str. SCHU S4
has_related_synonym: Francisella tularensis Biovar A str. Schu 4
has_related_synonym: Francisella tularensis subsp. tularensis Schu 4

WEEV complex
type: Class
subclass of: Alphavirus
subclass of: Restriction
  on property: has_part
  some values from: genome of WEEV complex
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy

Terrabacteria group
type: Class
subclass of: Bacteria
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:18988685
数据库_交叉_引用: PMID:23851394
有_obo_命名空间: ncbi_taxonomy

Cryptococcus neoformans var. grubii
type: Class
subclass of: Cryptococcus neoformans
subclass of: Restriction
  on property: has_part
  some values from: genome of Cryptococcus neoformans var. grubii
imported from: ncbitaxon.owl
has_rank: NCBITaxon varietas
has_alternative_id: NCBITaxon:427679
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Cryptococcus neoformans A
has_related_synonym: Cryptococcus neoformans serotype A
has_related_synonym: Filobasidiella neoformans serotype A
has_related_synonym: Filobasidiella neoformans var. grubii

Chlamydophila pneumoniae TW-183
type: Class
subclass of: Chlamydia pneumoniae
subclass of: Restriction
  on property: has_part
  some values from: genome of Chlamydophila pneumoniae TW-183
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Chlamydia pneumoniae TW-183
has_related_synonym: Chlamydia pneumoniae TW183
has_related_synonym: Chlamydophila pneumoniae TW183

Trypanosoma brucei TREU927
type: Class
subclass of: Trypanosoma
subclass of: Restriction
  on property: has_part
  some values from: genome of Trypanosoma brucei TREU927
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Trypanosoma brucei strain TREU927
id: NCBITaxon:185431
label: Trypanosoma brucei brucei TREU927

Streptococcus pyogenes MGAS8232
type: Class
subclass of: Streptococcus pyogenes
subclass of: Restriction
  on property: has_part
  some values from: genome of Streptococcus pyogenes MGAS8232
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:11917108
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Streptococcus pyogenes (serotype 18 / MGAS8232)

Zaire ebolavirus
type: Class
subclass of: Mononegavirales
subclass of: Restriction
  on property: has_part
  some values from: genome of Zaire ebolavirus
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_broad_synonym: ZEBOV
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Zaire Ebola virus

Clupeocephala
type: Class
subclass of: Euteleostomi
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy

Clostridiales
type: Class
subclass of: Firmicutes
subclass of: Restriction
  on property: has_part
  some values from: genome of Clostridiales
imported from: ncbitaxon.owl
has_rank: NCBITaxon order
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:16558750
数据库_交叉_引用: PMID:24480908
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Eubacteriales

Orthopneumovirus
type: Class
subclass of: Pneumoviridae
imported from: ncbitaxon.owl
has_rank: NCBITaxon genus
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy

Lactobacillales
type: Class
subclass of: Bacilli
subclass of: Restriction
  on property: has_part
  some values from: genome of Lactobacillales
imported from: ncbitaxon.owl
has_rank: NCBITaxon order
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:20212322
有_obo_命名空间: ncbi_taxonomy

Yersinia pestis KIM10+
type: Class
subclass of: Yersinia pestis
subclass of: Restriction
  on property: has_part
  some values from: genome of Yersinia pestis KIM10+
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:12142430
has_exact_synonym: Yersinia pestis str. KIM10+
has_exact_synonym: Yersinia pestis strain KIM10+
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Yersinia pestis KIM
has_related_synonym: Yersinia pestis KIM 10
has_related_synonym: Yersinia pestis KIM 10+

Leptospira interrogans serovar Lai str. 56601
type: Class
subclass of: Spirochaetales
subclass of: Restriction
  on property: has_part
  some values from: genome of Leptospira interrogans serovar Lai str. 56601
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:12712204
有_obo_命名空间: ncbi_taxonomy
id: NCBITaxon:189518

Bacillus anthracis str. A2012
type: Class
subclass of: Bacillus anthracis
subclass of: Restriction
  on property: has_part
  some values from: genome of Bacillus anthracis str. A2012
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Bacillus anthracis A2012
has_exact_synonym: Bacillus anthracis strain A2012
有_obo_命名空间: ncbi_taxonomy

Campylobacter jejuni subsp. jejuni NCTC 11168
type: Class
subclass of: Campylobacter jejuni subsp. jejuni
subclass of: Restriction
  on property: has_part
  some values from: genome of Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:10688204
has_exact_synonym: Campylobacter jejuni subsp. jejuni ATCC 700819 = NCTC 11168
has_exact_synonym: Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Campylobacter jejuni subsp. jejuni ATCC 700819
has_related_synonym: Campylobacter jejuni subsp. jejuni NCTC 11168
id: NCBITaxon:192222
label: Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

Streptococcus pyogenes SSI-1
type: Class
subclass of: Streptococcus pyogenes serotype M3
subclass of: Restriction
  on property: has_part
  some values from: genome of Streptococcus pyogenes SSI-1
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Streptococcus pyogenes str. SSI-1
有_obo_命名空间: ncbi_taxonomy

Campylobacter jejuni RM1221
type: Class
subclass of: Campylobacter jejuni
subclass of: Restriction
  on property: has_part
  some values from: genome of Campylobacter jejuni RM1221
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:15660156
数据库_交叉_引用: PMID:16943349
has_exact_synonym: Campylobacter jejuni str. RM1221
has_exact_synonym: Campylobacter jejuni strain RM1221
有_obo_命名空间: ncbi_taxonomy

Clostridium perfringens str. 13
type: Class
subclass of: Clostridium perfringens
subclass of: Restriction
  on property: has_part
  some values from: genome of Clostridium perfringens str. 13
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:11792842
has_exact_synonym: Clostridium perfringens 13
有_obo_命名空间: ncbi_taxonomy

Clostridium perfringens ATCC 13124
type: Class
subclass of: Clostridium perfringens
subclass of: Restriction
  on property: has_part
  some values from: genome of Clostridium perfringens ATCC 13124
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:16825665
has_exact_synonym: Clostridium perfringens str. ATCC 13124
has_exact_synonym: Clostridium perfringens strain ATCC 13124
有_obo_命名空间: ncbi_taxonomy

Staphylococcus aureus subsp. aureus MW2
type: Class
subclass of: Staphylococcus aureus subsp. aureus
subclass of: Restriction
  on property: has_part
  some values from: genome of Staphylococcus aureus subsp. aureus MW2
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:12044378
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Staphylococcus aureus (strain MW2)
has_related_synonym: Staphylococcus aureus subsp. aureus str. MW2
id: NCBITaxon:196620

Campylobacter jejuni
type: Class
subclass of: Campylobacterales
subclass of: Restriction
  on property: has_part
  some values from: genome of Campylobacter jejuni
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:11321120
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Ampylobacter jejuni
has_related_synonym: Campylobacter fetus subsp. jejuni
has_related_synonym: Vibrio hepaticus
has_related_synonym: Vibrio jejuni

Pancrustacea
type: Class
subclass of: Ecdysozoa
editor preferred label: Pancrustacea
imported from: ncbitaxon.owl

Influenzavirus A
type: Class
subclass of: Viruses
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: FluA-
id: NCBITaxon:197911

Axiom
annotated source: Influenzavirus A
annotated property: has_related_synonym
annotated target: FluA-
数据库_交叉_引用: PRO:DAN
has_synonym_type: Unique short label for PRO terms for display purposes; based on orthology

Bacillus anthracis str. Ames
type: Class
subclass of: Bacillus anthracis
subclass of: Restriction
  on property: has_part
  some values from: genome of Bacillus anthracis str. Ames
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:12721629
has_exact_synonym: Bacillus anthracis (strain Ames)
has_exact_synonym: Bacillus anthracis Ames
has_exact_synonym: Bacillus anthracis strain Ames
有_obo_命名空间: ncbi_taxonomy

Shigella flexneri 2a str. 301
type: Class
subclass of: Shigella flexneri 2a
subclass of: Restriction
  on property: has_part
  some values from: genome of Shigella flexneri 2a str. 301
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:12384590
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Shigella flexneri serotype 2a str. 301

Shigella flexneri 2a str. 2457T
type: Class
subclass of: Shigella flexneri 2a
subclass of: Restriction
  on property: has_part
  some values from: genome of Shigella flexneri 2a str. 2457T
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:12704152
has_exact_synonym: Shigella flexneri 2a strain 2457T
has_exact_synonym: Shigella flexneri serotype 2a str. 2457T
有_obo_命名空间: ncbi_taxonomy

Streptococcus pyogenes MGAS315
type: Class
subclass of: Streptococcus pyogenes serotype M3
subclass of: Restriction
  on property: has_part
  some values from: genome of Streptococcus pyogenes MGAS315
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Streptococcus pyogenes str. MGAS315
有_obo_命名空间: ncbi_taxonomy

Coccidioides posadasii
type: Class
subclass of: Onygenales
subclass of: Restriction
  on property: has_part
  some values from: genome of Coccidioides posadasii
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy

Escherichia coli CFT073
type: Class
subclass of: Escherichia coli
subclass of: Restriction
  on property: has_part
  some values from: genome of Escherichia coli CFT073
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Escherichia coli str. CFT073
has_exact_synonym: Escherichia coli strain CFT073
有_obo_命名空间: ncbi_taxonomy
id: NCBITaxon:199310

Bacteria
type: Class
subclass of: organism
subclass of: Restriction
  on property: has_part
  some values from: genome of Bacteria
editor preferred label: Bacteria
alternative term: eubacteria
imported from: ncbitaxon.owl
has_rank: NCBITaxon superkingdom
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:10425795
数据库_交叉_引用: PMID:10425796
数据库_交叉_引用: PMID:10425797
数据库_交叉_引用: PMID:10490293
数据库_交叉_引用: PMID:10843050
数据库_交叉_引用: PMID:10939651
数据库_交叉_引用: PMID:10939673
数据库_交叉_引用: PMID:10939677
数据库_交叉_引用: PMID:11211268
数据库_交叉_引用: PMID:11321083
数据库_交叉_引用: PMID:11321113
数据库_交叉_引用: PMID:11411719
数据库_交叉_引用: PMID:11540071
数据库_交叉_引用: PMID:11542017
数据库_交叉_引用: PMID:11542087
数据库_交叉_引用: PMID:11760965
数据库_交叉_引用: PMID:12054223
数据库_交叉_引用: PMID:2112744
数据库_交叉_引用: PMID:270744
数据库_交叉_引用: PMID:8123559
数据库_交叉_引用: PMID:8590690
数据库_交叉_引用: PMID:9103655
数据库_交叉_引用: PMID:9336922
has_exact_synonym: Bacteria <prokaryote>
has_exact_synonym: eubacteria
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Monera
has_related_synonym: Procaryotae
has_related_synonym: Prokaryota
has_related_synonym: Prokaryotae
has_related_synonym: bact-
has_related_synonym: bacteria
has_related_synonym: not Bacteria Haeckel 1894
has_related_synonym: prokaryote
has_related_synonym: prokaryotes
id: NCBITaxon:2

Axiom
annotated source: Bacteria
annotated property: has_related_synonym
annotated target: bact-
数据库_交叉_引用: PRO:DAN
has_synonym_type: Unique short label for PRO terms for display purposes; based on orthology

Spirochaetia
type: Class
subclass of: Bacteria
imported from: ncbitaxon.owl
has_rank: NCBITaxon class
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:11837318
数据库_交叉_引用: PMID:25288668
数据库_交叉_引用: PMID:26654112
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Spirochaetes

Brucella suis 1330
type: Class
subclass of: Brucella
subclass of: Restriction
  on property: has_part
  some values from: genome of Brucella suis 1330
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:12271122
has_exact_synonym: Brucella suis biovar 1 (strain 1330)
has_exact_synonym: Brucella suis str. 1330
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Brucella melitensis biovar Suis str. 1330
has_related_synonym: Brucella suis ATCC 23444
has_related_synonym: Brucella suis NCTC 10316
has_related_synonym: Bsuis1330-
id: NCBITaxon:204722

Axiom
annotated source: Brucella suis 1330
annotated property: has_exact_synonym
annotated target: Brucella suis biovar 1 (strain 1330)
数据库_交叉_引用: PRO:CNA

Axiom
annotated source: Brucella suis 1330
annotated property: has_related_synonym
annotated target: Bsuis1330-
数据库_交叉_引用: PRO:DAN
has_synonym_type: Unique short label for PRO terms for display purposes; based on orthology

Ebola virus sp.
type: Class
subclass of: Mononegavirales
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_alternative_id: NCBITaxon:11268
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Ebola virus EBO
has_related_synonym: unidentified Ebola virus

Streptococcus agalactiae A909
type: Class
subclass of: Streptococcus agalactiae
subclass of: Restriction
  on property: has_part
  some values from: genome of Streptococcus agalactiae A909
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Streptococcus agalactiae str. A909

Streptococcus agalactiae 2603V/R
type: Class
subclass of: Streptococcus agalactiae
subclass of: Restriction
  on property: has_part
  some values from: genome of Streptococcus agalactiae 2603V/R
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:12200547
has_exact_synonym: Streptococcus agalactiae str. 2603V/R
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Streptococcus agalactiae 2603VR
id: NCBITaxon:208435

Pseudomonas aeruginosa UCBPP-PA14
type: Class
subclass of: Pseudomonas aeruginosa
subclass of: Restriction
  on property: has_part
  some values from: genome of Pseudomonas aeruginosa UCBPP-PA14
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Pseudomonas aeruginosa str. UCBPP-PA14

Pseudomonas aeruginosa PAO1
type: Class
subclass of: Pseudomonas aeruginosa
subclass of: Restriction
  on property: has_part
  some values from: genome of Pseudomonas aeruginosa PAO1
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:10984043
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Pseudomonas aeruginosa PA01
has_related_synonym: Pseudomonas aeruginosa str. PA01
has_related_synonym: Pseudomonas aeruginosa str. PAO1
id: NCBITaxon:208964

Salmonella enterica subsp. enterica serovar Typhi str. Ty2
type: Class
subclass of: Salmonella enterica subsp. enterica serovar Typhi
subclass of: Restriction
  on property: has_part
  some values from: genome of Salmonella enterica subsp. enterica serovar Typhi str. Ty2
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:12644504
has_exact_synonym: Salmonella enterica subsp. enterica serovar Typhi strain Ty2
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Salmonella enterica subsp. enterica serovar Typhi Ty2

Mycoplasma gallisepticum
type: Class
subclass of: Terrabacteria group
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:4
有_obo_命名空间: ncbi_taxonomy

Helicobacter pylori
type: Class
subclass of: Campylobacterales
subclass of: Restriction
  on property: has_part
  some values from: genome of Helicobacter pylori
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_alternative_id: NCBITaxon:219
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:11931154
数据库_交叉_引用: PMID:1995031
数据库_交叉_引用: PMID:8186097
数据库_交叉_引用: PMID:8494747
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Campylobacter pylori
has_related_synonym: Campylobacter pylori subsp. pylori
has_related_synonym: Campylobacter pyloridis
has_related_synonym: Helicobacter nemestrinae

Influenza A virus (A/Puerto Rico/8/1934(H1N1))
type: Class
subclass of: Influenza A virus
subclass of: Restriction
  on property: has_part
  some values from: genome of Influenza A virus (A/Puerto Rico/8/1934(H1N1))
imported from: ncbitaxon.owl
has_alternative_id: NCBITaxon:11455
has_alternative_id: NCBITaxon:197769
has_alternative_id: NCBITaxon:228930
has_alternative_id: NCBITaxon:382824
has_alternative_id: NCBITaxon:384491
has_alternative_id: NCBITaxon:385648
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Influenza A virus ( A/Puerto Rico/8/1934(H1N1))
has_related_synonym: Influenza A virus (A/PR 8/34 (H1N1))
has_related_synonym: Influenza A virus (A/PR/8/1934(H1N1))
has_related_synonym: Influenza A virus (A/PR/8/34(H0N1))
has_related_synonym: Influenza A virus (A/PR/8/34(H1N1))
has_related_synonym: Influenza A virus (A/PR/8/34(HON1))
has_related_synonym: Influenza A virus (A/PR8/1934(H1N1))
has_related_synonym: Influenza A virus (A/Puerto Rico/8/1934(H0N1))
has_related_synonym: Influenza A virus (A/Puerto Rico/8/34(H1N1))
has_related_synonym: Influenza A virus (A/Puerto Rico/8/34)
has_related_synonym: Influenza A virus (STRAIN A/PUERTO RICO/8/34)
has_related_synonym: nfluenza A virus (A/PR 8/34(H1N1))
id: NCBITaxon:211044

Streptococcus agalactiae NEM316
type: Class
subclass of: Streptococcus agalactiae
subclass of: Restriction
  on property: has_part
  some values from: genome of Streptococcus agalactiae NEM316
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:12354221
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Streptococcus agalactiae str. NEM316

Clostridium tetani E88
type: Class
subclass of: Clostridium
subclass of: Restriction
  on property: has_part
  some values from: genome of Clostridium tetani E88
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:12552129
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Clostridium tetani str. E88
id: NCBITaxon:212717

Campylobacterales
type: Class
subclass of: Proteobacteria
subclass of: Restriction
  on property: has_part
  some values from: genome of Campylobacterales
imported from: ncbitaxon.owl
has_rank: NCBITaxon order
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:16403855
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: 'Campylobacterales'

Yersinia pestis CO92
type: Class
subclass of: Yersinia pestis
subclass of: Restriction
  on property: has_part
  some values from: genome of Yersinia pestis CO92
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:11586360
has_exact_synonym: Yersinia pestis str. CO92
has_exact_synonym: Yersinia pestis strain CO92
有_obo_命名空间: ncbi_taxonomy

Cryptococcus neoformans var. neoformans JEC21
type: Class
subclass of: Cryptococcus neoformans var. neoformans
subclass of: Restriction
  on property: has_part
  some values from: genome of Cryptococcus neoformans var. neoformans JEC21
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:1
has_exact_synonym: Cryptococcus neoformans JEC21
has_exact_synonym: Cryptococcus neoformans var. neoformans strain JEC21
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Cryptococcus neoformans var. neoformans serotype D JEC21
has_related_synonym: Filobasidiella neoformans var. neoformans strain JEC21

Archaea
type: Class
subclass of: organism
editor preferred label: Archaea
imported from: ncbitaxon.owl
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: arch-
id: NCBITaxon:2157

Axiom
annotated source: Archaea
annotated property: has_related_synonym
annotated target: arch-
数据库_交叉_引用: PRO:DAN
has_synonym_type: Unique short label for PRO terms for display purposes; based on orthology

Salmonella enterica subsp. enterica serovar Typhi str. CT18
type: Class
subclass of: Salmonella enterica subsp. enterica serovar Typhi
subclass of: Restriction
  on property: has_part
  some values from: genome of Salmonella enterica subsp. enterica serovar Typhi str. CT18
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:11677608
has_exact_synonym: Salmonella enterica subsp. enterica serovar Typhi CT18
has_exact_synonym: Salmonella enterica subsp. enterica serovar Typhi strain CT18
has_exact_synonym: Salmonella typhi CT18
有_obo_命名空间: ncbi_taxonomy

Borrelia burgdorferi B31
type: Class
subclass of: Borrelia burgdorferi
subclass of: Restriction
  on property: has_part
  some values from: genome of Borrelia burgdorferi B31
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:9403685
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Borrelia burgdorferi str. B31
id: NCBITaxon:224326
label: Borreliella burgdorferi B31

Brucella melitensis bv. 1 str. 16M
type: Class
subclass of: Brucella melitensis
subclass of: Restriction
  on property: has_part
  some values from: genome of Brucella melitensis bv. 1 str. 16M
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:11756688
has_exact_synonym: Brucella melitensis biotype 1 (strain 16m / atcc 23456 / nctc 10094)
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Bmel16M-
has_related_synonym: Brucella melitensis 16M
has_related_synonym: Brucella melitensis ATCC 23456
has_related_synonym: Brucella melitensis str. 16M
has_related_synonym: Brucella melitensis str. ATCC 23456
id: NCBITaxon:224914

Axiom
annotated source: Brucella melitensis bv. 1 str. 16M
annotated property: has_exact_synonym
annotated target: Brucella melitensis biotype 1 (strain 16m / atcc 23456 / nctc 10094)
数据库_交叉_引用: PRO:CNA

Axiom
annotated source: Brucella melitensis bv. 1 str. 16M
annotated property: has_related_synonym
annotated target: Bmel16M-
数据库_交叉_引用: PRO:DAN
has_synonym_type: Unique short label for PRO terms for display purposes; based on orthology

Enterococcus faecalis V583
type: Class
subclass of: Enterococcus faecalis
subclass of: Restriction
  on property: has_part
  some values from: genome of Enterococcus faecalis V583
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:12663927
has_exact_synonym: Enterococcus faecalis str. V583
has_exact_synonym: Enterococcus faecalis strain V583
有_obo_命名空间: ncbi_taxonomy
id: NCBITaxon:226185

Aspergillus nidulans FGSC A4
type: Class
subclass of: Emericella nidulans
subclass of: Restriction
  on property: has_part
  some values from: genome of Aspergillus nidulans FGSC A4
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Emericella nidulans FGSC A4

Coxiella burnetii RSA 493
type: Class
subclass of: Legionellales
subclass of: Restriction
  on property: has_part
  some values from: genome of Coxiella burnetii RSA 493
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:12704232
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Coxiella burnetii str. RSA 493
id: NCBITaxon:227377

Yersinia pestis biovar Microtus str. 91001
type: Class
subclass of: Yersinia pestis
subclass of: Restriction
  on property: has_part
  some values from: genome of Yersinia pestis biovar Microtus str. 91001
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:15262951
数据库_交叉_引用: PMID:15368893
has_exact_synonym: Yersinia pestis biovar Microtus 91001
has_exact_synonym: Yersinia pestis biovar Microtus strain 91001
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Yersinia pestis biovar Mediaevails str. 91001
has_related_synonym: Yersinia pestis biovar Medievalis str. 91001
has_related_synonym: Yersinia pestis bv. Microtus str. 91001

Brucella
type: Class
subclass of: Brucellaceae
subclass of: Rhizobiales
subclass of: Restriction
  on property: has_part
  some values from: genome of Brucella
imported from: ncbitaxon.owl
has_rank: NCBITaxon genus
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:28066370
数据库_交叉_引用: PMID:8573514
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Bru-
has_related_synonym: Brucella Meyer and Shaw 1920
id: NCBITaxon:234

Axiom
annotated source: Brucella
annotated property: has_related_synonym
annotated target: Bru-
数据库_交叉_引用: PRO:DAN
has_synonym_type: Unique short label for PRO terms for display purposes; based on orthology

Brucella abortus
type: Class
subclass of: Brucella
subclass of: Restriction
  on property: has_part
  some values from: genome of Brucella abortus
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Brucella melitensis bv. Abortus
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Bacterium abortus
has_related_synonym: Brucella melitensis biovar Abortus

Cryptococcus neoformans var. grubii H99
type: Class
subclass of: Fungi
有_obo_命名空间: ncbi_taxonomy
id: NCBITaxon:235443

Candida albicans SC5314
type: Class
subclass of: Fungi
subclass of: Candida albicans
subclass of: Restriction
  on property: has_part
  some values from: genome of Candida albicans SC5314
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:12
有_obo_命名空间: ncbi_taxonomy
id: NCBITaxon:237561

Burkholderia mallei ATCC 23344
type: Class
subclass of: Burkholderia mallei
subclass of: Restriction
  on property: has_part
  some values from: genome of Burkholderia mallei ATCC 23344
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Burkholderia mallei str. ATCC 23344
有_obo_命名空间: ncbi_taxonomy
id: NCBITaxon:243160

Vibrio cholerae O1 biovar El Tor str. N16961
type: Class
subclass of: Vibrio cholerae
subclass of: Restriction
  on property: has_part
  some values from: genome of Vibrio cholerae O1 biovar El Tor str. N16961
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:10952301
has_exact_synonym: Vibrio cholerae El Tor N16961
has_exact_synonym: Vibrio cholerae serotype O1 biotype El Tor strain N16961
has_exact_synonym: Vibrio cholerae serotype O1 biotype ElTor strain N16961
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Vchol-
has_related_synonym: Vibrio cholerae O1 biovar eltor str. N16961
id: NCBITaxon:243277

Axiom
annotated source: Vibrio cholerae O1 biovar El Tor str. N16961
annotated property: has_related_synonym
annotated target: Vchol-
数据库_交叉_引用: PRO:DAN
has_synonym_type: Unique short label for PRO terms for display purposes; based on orthology

Corynebacterium diphtheriae NCTC 13129
type: Class
subclass of: Corynebacteriales
subclass of: Restriction
  on property: has_part
  some values from: genome of Corynebacterium diphtheriae NCTC 13129
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:14602910
has_exact_synonym: Corynebacterium diphtheriae NCTC13129
有_obo_命名空间: ncbi_taxonomy

Bordetella bronchiseptica RB50
type: Class
subclass of: Bordetella
subclass of: Restriction
  on property: has_part
  some values from: genome of Bordetella bronchiseptica RB50
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:12910271
有_obo_命名空间: ncbi_taxonomy

Bordetella pertussis Tohama I
type: Class
subclass of: Bordetella pertussis
subclass of: Restriction
  on property: has_part
  some values from: genome of Bordetella pertussis Tohama I
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:12910271
有_obo_命名空间: ncbi_taxonomy
id: NCBITaxon:257313

Bacillus anthracis str. Sterne
type: Class
subclass of: Bacillus anthracis
subclass of: Restriction
  on property: has_part
  some values from: genome of Bacillus anthracis str. Sterne
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Bacillus anthracis (strain Sterne)
has_exact_synonym: Bacillus anthracis Sterne
有_obo_命名空间: ncbi_taxonomy

Bacillus anthracis str. 'Ames Ancestor'
type: Class
subclass of: Bacillus anthracis
subclass of: Restriction
  on property: has_part
  some values from: genome of Bacillus anthracis str. 'Ames Ancestor'
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:18952800
has_exact_synonym: Bacillus anthracis Ames "Ancestor"
has_exact_synonym: Bacillus anthracis str. Ames Ancestor
has_exact_synonym: Bacillus anthracis strain 'Ames Ancestor'
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Bacillus anthracis str. Ames 0581

Orgyia pseudotsugata MNPV
type: Class
subclass of: Alphabaculovirus
subclass of: Restriction
  on property: has_part
  some values from: genome of Orgyia pseudotsugata MNPV
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_alternative_id: NCBITaxon:164623
has_broad_synonym: OpMNPV
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Orgya pseudotsugata MNPV
has_related_synonym: Orgya pseudotsugata nucleopolyhedrovirus
has_related_synonym: Orgyia pseudotsugata multicapsid nuclear polyhedrosis virus
has_related_synonym: Orgyia pseudotsugata multicapsid nuclear polyhedrosis virus OpMNPV
has_related_synonym: Orgyia pseudotsugata multicapsid nucleopolyhedrovirus
has_related_synonym: Orgyia pseudotsugata multicapsid polyhedrosis virus
has_related_synonym: Orgyia pseudotsugata multinucleocapsid nuclear polyhedrosis virus
has_related_synonym: Orgyia pseudotsugata multiple nucleopolyhedrovirus

Mycobacterium avium subsp. paratuberculosis K-10
type: Class
subclass of: Mycobacterium
subclass of: Restriction
  on property: has_part
  some values from: genome of Mycobacterium avium subsp. paratuberculosis K-10
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:16116077
数据库_交叉_引用: PMID:20870759
has_exact_synonym: Mycobacterium avium subsp. paratuberculosis str. K-10
has_exact_synonym: Mycobacterium avium subsp. paratuberculosis strain K-10
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Mycobacterium avium subsp. paratuberculosis K10

Francisella tularensis
type: Class
subclass of: Gammaproteobacteria
subclass of: Restriction
  on property: has_part
  some values from: genome of Francisella tularensis
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:11
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Bacterium tularense
has_related_synonym: Brucella tularensis
has_related_synonym: Francisella tularense
has_related_synonym: Pasteurella tularensis

Listeria monocytogenes serotype 4b str. F2365
type: Class
subclass of: Listeria monocytogenes
subclass of: Restriction
  on property: has_part
  some values from: genome of Listeria monocytogenes serotype 4b str. F2365
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Listeria monocytogenes serotype 4b strain F2365
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Listeria monocytogenes str. 4b F2365

Pneumonia virus of mice J3666
type: Class
subclass of: Pneumovirus
subclass of: Restriction
  on property: has_part
  some values from: genome of Pneumonia virus of mice J3666
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy

Bombyx mori NPV
type: Class
subclass of: Alphabaculovirus
subclass of: Restriction
  on property: has_part
  some values from: genome of Bombyx mori NPV
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_alternative_id: NCBITaxon:10458
has_broad_synonym: BmNPV
has_broad_synonym: BmSNPV
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Bombyx mori S nuclear polyhedrosis virus
has_related_synonym: Bombyx mori nuclear polyhedrosis virus
has_related_synonym: Bombyx mori nuclear polyhedrosis virus BmNPV
has_related_synonym: Bombyx mori nuclear polyhedrosis virus, BmSNPV
has_related_synonym: Bombyx mori nucleopolyhedrosis virus
has_related_synonym: Bombyx mori nucleopolyhedrovirus

Burkholderia pseudomallei K96243
type: Class
subclass of: Burkholderia pseudomallei
subclass of: Restriction
  on property: has_part
  some values from: genome of Burkholderia pseudomallei K96243
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Burkholderia pseudomallei str. K96243
has_exact_synonym: Burkholderia pseudomallei strain K96243
有_obo_命名空间: ncbi_taxonomy
id: NCBITaxon:272560

Chlamydia trachomatis D/UW-3/CX
type: Class
subclass of: Chlamydia
subclass of: Restriction
  on property: has_part
  some values from: genome of Chlamydia trachomatis D/UW-3/CX
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Chlamydia trachomatis str. D/UW-3/CX
has_exact_synonym: Chlamydia trachomatis strain D/UW-3/CX
有_obo_命名空间: ncbi_taxonomy
id: NCBITaxon:272561

Clostridioides difficile 630
type: Class
subclass of: Clostridioides difficile
subclass of: Restriction
  on property: has_part
  some values from: genome of Clostridium difficile 630
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Clostridium difficile 630 (epidemic type X)
has_exact_synonym: Clostridium difficile str. 630
has_exact_synonym: Clostridium difficile strain 630
有_obo_命名空间: ncbi_taxonomy
id: NCBITaxon:272563
label: Clostridium difficile 630

Legionella pneumophila subsp. pneumophila str. Philadelphia 1
type: Class
subclass of: Legionella pneumophila
subclass of: Restriction
  on property: has_part
  some values from: genome of Legionella pneumophila subsp. pneumophila str. Philadelphia 1
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:15448271
has_exact_synonym: Legionella pneumophila subsp. pneumophila 'Philadelphia 1'
has_exact_synonym: Legionella pneumophila subsp. pneumophila strain Philadelphia 1
有_obo_命名空间: ncbi_taxonomy

Neisseria meningitidis FAM18
type: Class
subclass of: Neisseria meningitidis serogroup C
subclass of: Restriction
  on property: has_part
  some values from: genome of Neisseria meningitidis FAM18
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Neisseria meningitidis str. FAM18
has_exact_synonym: Neisseria meningitidis strain FAM18
有_obo_命名空间: ncbi_taxonomy

Pasteurella multocida subsp. multocida str. Pm70
type: Class
subclass of: Pasteurella multocida
subclass of: Restriction
  on property: has_part
  some values from: genome of Pasteurella multocida subsp. multocida str. Pm70
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Pasteurella multocida subsp. multocida Pm70
has_exact_synonym: Pasteurella multocida subsp. multocida strain Pm70
有_obo_命名空间: ncbi_taxonomy

Rickettsia prowazekii str. Madrid E
type: Class
subclass of: Alphaproteobacteria
subclass of: Restriction
  on property: has_part
  some values from: genome of Rickettsia prowazekii str. Madrid E
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:9823893
has_exact_synonym: Rickettsia prowazekii 'Madrid E'
has_exact_synonym: Rickettsia prowazekii strain Madrid E
有_obo_命名空间: ncbi_taxonomy

Staphylococcus aureus RF122
type: Class
subclass of: Staphylococcus aureus
subclass of: Restriction
  on property: has_part
  some values from: genome of Staphylococcus aureus RF122
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Staphylococcus aureus str. RF122
has_exact_synonym: Staphylococcus aureus strain RF122
有_obo_命名空间: ncbi_taxonomy
id: NCBITaxon:273036

Yersinia pseudotuberculosis IP 32953
type: Class
subclass of: Yersinia pseudotuberculosis
subclass of: Restriction
  on property: has_part
  some values from: genome of Yersinia pseudotuberculosis IP 32953
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Yersinia pseudotuberculosis IP32953
has_exact_synonym: Yersinia pseudotuberculosis str. IP 32953
has_exact_synonym: Yersinia pseudotuberculosis strain IP 32953
有_obo_命名空间: ncbi_taxonomy
id: NCBITaxon:273123

Eukaryota
type: Class
subclass of: organism
subclass of: Restriction
  on property: has_part
  some values from: genome of Eukaryota
editor preferred label: Eukaryota
alternative term: eucaryotes
alternative term: eukaryotes
imported from: ncbitaxon.owl
has_rank: NCBITaxon superkingdom
数据库_交叉_引用: GC_ID:1
数据库_交叉_引用: PMID:23020233
has_exact_synonym: eucaryotes
has_exact_synonym: eukaryotes
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Eucarya
has_related_synonym: Eucaryotae
has_related_synonym: Eukarya
has_related_synonym: Eukaryotae
has_related_synonym: euk-
has_related_synonym: eukaryotes
id: NCBITaxon:2759

Axiom
annotated source: Eukaryota
annotated property: has_related_synonym
annotated target: euk-
数据库_交叉_引用: PRO:DAN
has_synonym_type: Unique short label for PRO terms for display purposes; based on orthology

Haemophilus influenzae 86-028NP
type: Class
subclass of: Haemophilus influenzae
subclass of: Restriction
  on property: has_part
  some values from: genome of Haemophilus influenzae 86-028NP
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:15968074
has_exact_synonym: Haemophilus influenzae str. 86-028NP
has_exact_synonym: Haemophilus influenzae strain 86-028NP
有_obo_命名空间: ncbi_taxonomy

Alphaproteobacteria
type: Class
subclass of: Proteobacteria
subclass of: Restriction
  on property: has_part
  some values from: genome of Alphaproteobacteria
imported from: ncbitaxon.owl
has_rank: NCBITaxon class
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:11541974
数据库_交叉_引用: PMID:11837318
数据库_交叉_引用: PMID:16166687
数据库_交叉_引用: PMID:16403855
数据库_交叉_引用: PMID:19060069
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: "Alphabacteria" Cavalier-Smith 1992
has_related_synonym: Alphabacteria
has_related_synonym: Alphabacteria Cavalier-Smith 2002
has_related_synonym: Alphaproteobacteria Garrity et al. 2006
has_related_synonym: Proteobacteria alpha subdivision
has_related_synonym: Purple bacteria, alpha subdivision
has_related_synonym: a-proteobacteria
has_related_synonym: alpha proteobacteria
has_related_synonym: alpha subdivision
has_related_synonym: alpha subgroup

Betaproteobacteria
type: Class
subclass of: Proteobacteria
subclass of: Restriction
  on property: has_part
  some values from: genome of Betaproteobacteria
imported from: ncbitaxon.owl
has_rank: NCBITaxon class
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:16403855
数据库_交叉_引用: PMID:28581923
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: 'Betaproteobacteria'
has_related_synonym: Proteobacteria beta subdivision
has_related_synonym: Purple bacteria, beta subdivision
has_related_synonym: b-proteobacteria
has_related_synonym: beta proteobacteria
has_related_synonym: beta subdivision
has_related_synonym: beta subgroup

Staphylococcus aureus subsp. aureus MRSA252
type: Class
subclass of: Staphylococcus aureus subsp. aureus
subclass of: Restriction
  on property: has_part
  some values from: genome of Staphylococcus aureus subsp. aureus MRSA252
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:15213324
has_exact_synonym: Staphylococcus aureus subsp. aureus str. MRSA252
has_exact_synonym: Staphylococcus aureus subsp. aureus strain MRSA252
有_obo_命名空间: ncbi_taxonomy
id: NCBITaxon:282458

Bartonella henselae str. Houston-1
type: Class
subclass of: Bartonella henselae
subclass of: Restriction
  on property: has_part
  some values from: genome of Bartonella henselae str. Houston-1
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:15210978
has_exact_synonym: Bartonella henselae strain Houston-1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Bartonella henselae ATCC 49882
has_related_synonym: Bartonella henselae str. ATCC 49882
has_related_synonym: Bartonella henselae strain ATCC 49882

Porcine reproductive and respiratory syndrome virus
type: Class
subclass of: Nidovirales
subclass of: Restriction
  on property: has_part
  some values from: genome of Porcine reproductive and respiratory syndrome virus
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_alternative_id: NCBITaxon:12796
has_alternative_id: NCBITaxon:70172
has_broad_synonym: PRRSV
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Porcine reproductive and respiratory syndrome virus (PRRSV)
has_related_synonym: Porcine respiratory and reproductive syndrome virus
has_related_synonym: porcine reproductive and respiratory syndrome virus PRRSV
has_related_synonym: porcine reproductive and respiratory syndrome virus, PRRSV

Cryptococcus neoformans var. neoformans B-3501A
type: Class
subclass of: Cryptococcus neoformans var. neoformans
subclass of: Fungi
subclass of: Restriction
  on property: has_part
  some values from: genome of Cryptococcus neoformans var. neoformans B-3501A
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
id: NCBITaxon:283643

Influenza A virus (A/Viet Nam/1203/2004(H5N1))
type: Class
subclass of: H5N1 subtype
subclass of: Restriction
  on property: has_part
  some values from: genome of Influenza A virus (A/Viet Nam/1203/2004(H5N1))
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Influenza A virus (A/Vietnam/1203/04(H5N1))
has_related_synonym: Influenza A virus (A/Vietnam/1203/2004)

Burkholderia pseudomallei
type: Class
subclass of: pseudomallei group
subclass of: Restriction
  on property: has_part
  some values from: genome of Burkholderia pseudomallei
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_alternative_id: NCBITaxon:1435366
has_alternative_id: NCBITaxon:1435368
has_alternative_id: NCBITaxon:1435988
has_alternative_id: NCBITaxon:1439853
has_alternative_id: NCBITaxon:1487954
has_alternative_id: NCBITaxon:1487955
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:12734250
数据库_交叉_引用: PMID:1283774
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Bacillus pseudomallei
has_related_synonym: Bacterium whitmori
has_related_synonym: Burkholderia pseudomallai
has_related_synonym: Burkholderia pseudomallei MSHR4009
has_related_synonym: Burkholderia pseudomallei MSHR4018
has_related_synonym: Burkholderia pseudomallei MSHR44
has_related_synonym: Burkholderia pseudomallei MSHR7839
has_related_synonym: Burkholderia sp. MSHR7839
has_related_synonym: Loefflerella pseudomallei
has_related_synonym: Malleomyces pseudomallei
has_related_synonym: Pseudomonas pseudomallei

Candida glabrata CBS 138
type: Class
subclass of: Candida glabrata
subclass of: Restriction
  on property: has_part
  some values from: genome of Candida glabrata CBS 138
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:1
has_exact_synonym: Candida glabrata ATCC 2001
has_exact_synonym: Candida glabrata ATCC2001
has_exact_synonym: Candida glabrata CBS138
有_obo_命名空间: ncbi_taxonomy

Trichocomaceae
type: Class
subclass of: Eurotiomycetidae
subclass of: Restriction
  on property: has_part
  some values from: genome of Trichocomaceae
imported from: ncbitaxon.owl
has_rank: NCBITaxon family
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Eurotiaceae

Streptococcus pyogenes MGAS10394
type: Class
subclass of: Streptococcus pyogenes
subclass of: Restriction
  on property: has_part
  some values from: genome of Streptococcus pyogenes MGAS10394
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:15272401
has_exact_synonym: Streptococcus pyogenes str. MGAS10394
has_exact_synonym: Streptococcus pyogenes strain MGAS10394
有_obo_命名空间: ncbi_taxonomy

Pseudomonas aeruginosa
type: Class
subclass of: Gammaproteobacteria
subclass of: Restriction
  on property: has_part
  some values from: genome of Pseudomonas aeruginosa
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_alternative_id: NCBITaxon:1224290
has_alternative_id: NCBITaxon:1437768
has_alternative_id: NCBITaxon:1437769
has_alternative_id: NCBITaxon:1437770
has_alternative_id: NCBITaxon:1508364
has_alternative_id: NCBITaxon:1683559
has_alternative_id: NCBITaxon:1683561
has_alternative_id: NCBITaxon:1851858
has_alternative_id: NCBITaxon:1851865
has_alternative_id: NCBITaxon:1860124
has_alternative_id: NCBITaxon:665948
has_alternative_id: NCBITaxon:931955
has_alternative_id: NCBITaxon:931956
has_alternative_id: NCBITaxon:931957
has_alternative_id: NCBITaxon:931958
has_alternative_id: NCBITaxon:932477
数据库_交叉_引用: GC_ID:11
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Bacillus aeruginosus
has_related_synonym: Bacillus pyocyaneus
has_related_synonym: Bacterium aeruginosum
has_related_synonym: Bacterium pyocyaneum
has_related_synonym: Micrococcus pyocyaneus
has_related_synonym: Peudomonas aeruginosa
has_related_synonym: Pseudomonas polycolor
has_related_synonym: Pseudomonas pyocyanea
has_related_synonym: Pseudomonas sp. 2_1_26
has_related_synonym: probable synonym or variety: "Pseudomonas polycolor" Clara 1930
id: NCBITaxon:287

Rotavirus A
type: Class
subclass of: Rotavirus
subclass of: Restriction
  on property: has_part
  some values from: genome of Rotavirus A
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_alternative_id: NCBITaxon:10973
has_alternative_id: NCBITaxon:183404
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Group A rotaviruses
has_related_synonym: Rotavirus group A
has_related_synonym: group A rotavirus

Clostridium perfringens SM101
type: Class
subclass of: Clostridium perfringens
subclass of: Restriction
  on property: has_part
  some values from: genome of Clostridium perfringens SM101
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:16825665
has_exact_synonym: Clostridium perfringens str. SM101
has_exact_synonym: Clostridium perfringens strain SM101
有_obo_命名空间: ncbi_taxonomy

Streptococcus pyogenes MGAS5005
type: Class
subclass of: Streptococcus pyogenes serotype M1
subclass of: Restriction
  on property: has_part
  some values from: genome of Streptococcus pyogenes MGAS5005
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
有_obo_命名空间: ncbi_taxonomy

Entamoeba histolytica HM-1:IMSS
type: Class
subclass of: Entamoeba histolytica
subclass of: Restriction
  on property: has_part
  some values from: genome of Entamoeba histolytica HM-1:IMSS
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy

Brucella melitensis
type: Class
subclass of: Brucella
subclass of: Restriction
  on property: has_part
  some values from: genome of Brucella melitensis
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:8573514
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Micrococcus melitensis
has_related_synonym: Streptococcus Miletensis

Yersinia ruckeri
type: Class
subclass of: Yersinia <bacteria>
subclass of: Restriction
  on property: has_part
  some values from: genome of Yersinia ruckeri
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:11
有_obo_命名空间: ncbi_taxonomy

Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
type: Class
subclass of: Salmonella enterica subsp. enterica
subclass of: Restriction
  on property: has_part
  some values from: genome of Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Salmonella enterica subsp. enterica serovar Paratypi A str. ATCC 9150

Legionella pneumophila str. Lens
type: Class
subclass of: Legionella pneumophila
subclass of: Restriction
  on property: has_part
  some values from: genome of Legionella pneumophila str. Lens
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Legionella pneumophila Lens

Legionella pneumophila str. Paris
type: Class
subclass of: Legionella pneumophila
subclass of: Restriction
  on property: has_part
  some values from: genome of Legionella pneumophila str. Paris
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Legionella pneumophila Paris

Shigella dysenteriae Sd197
type: Class
subclass of: Shigella
subclass of: Restriction
  on property: has_part
  some values from: genome of Shigella dysenteriae Sd197
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Shigella dysenteriae str. Sd197
has_exact_synonym: Shigella dysenteriae strain Sd197
有_obo_命名空间: ncbi_taxonomy
id: NCBITaxon:300267

Shigella boydii Sb227
type: Class
subclass of: Shigella boydii
subclass of: Restriction
  on property: has_part
  some values from: genome of Shigella boydii Sb227
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Shigella boydii str. Sb227
has_exact_synonym: Shigella boydii strain Sb227
有_obo_命名空间: ncbi_taxonomy

Shigella sonnei Ss046
type: Class
subclass of: Shigella
subclass of: Restriction
  on property: has_part
  some values from: genome of Shigella sonnei Ss046
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Shigella sonnei str. Ss046
has_exact_synonym: Shigella sonnei strain Ss046
有_obo_命名空间: ncbi_taxonomy

Streptococcus pyogenes serotype M1
type: Class
subclass of: Streptococcus pyogenes
subclass of: Restriction
  on property: has_part
  some values from: genome of Streptococcus pyogenes serotype M1
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
有_obo_命名空间: ncbi_taxonomy
id: NCBITaxon:301447

Streptococcus pyogenes serotype M3
type: Class
subclass of: Streptococcus pyogenes
subclass of: Restriction
  on property: has_part
  some values from: genome of Streptococcus pyogenes serotype M3
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Streptococcus pyogenes (serotype M3)
有_obo_命名空间: ncbi_taxonomy

Laurasiatheria
type: Class
subclass of: Boreoeutheria
imported from: ncbitaxon.owl
has_rank: NCBITaxon superorder
数据库_交叉_引用: GC_ID:1
数据库_交叉_引用: PMID:11214318
数据库_交叉_引用: PMID:11214319
数据库_交叉_引用: PMID:12878460
有_obo_命名空间: ncbi_taxonomy

Euarchontoglires
type: Class
subclass of: Boreoeutheria
subclass of: Mammalia
editor preferred label: Euarchontoglires
imported from: ncbitaxon.owl
has_rank: NCBITaxon superorder
数据库_交叉_引用: GC_ID:1
数据库_交叉_引用: PMID:11214319
数据库_交叉_引用: PMID:12082125
数据库_交叉_引用: PMID:12878460
数据库_交叉_引用: PMID:15522813
有_obo_命名空间: ncbi_taxonomy

Glires
type: Class
subclass of: Euarchontoglires
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:1
数据库_交叉_引用: PMID:11214319
数据库_交叉_引用: PMID:12082125
数据库_交叉_引用: PMID:15522813
has_exact_synonym: Rodents and rabbits
有_obo_命名空间: ncbi_taxonomy

Simiiformes
type: Class
subclass of: Euarchontoglires
imported from: ncbitaxon.owl
has_rank: NCBITaxon infraorder
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Anthropoidea

Escherichia coli str. K-12 substr. DH10B
type: Class
subclass of: Escherichia coli K-12
subclass of: Restriction
  on property: has_part
  some values from: genome of Escherichia coli str. K-12 substr. DH10B
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:18245285
has_exact_synonym: Escherichia coli DH10B
has_exact_synonym: Escherichia coli str. K12 substr. DH10B
has_exact_synonym: Escherichia coli strain K12 substrain DH10B
有_obo_命名空间: ncbi_taxonomy

Escherichia coli ETEC H10407
type: Class
subclass of: Escherichia coli
subclass of: Restriction
  on property: has_part
  some values from: genome of Escherichia coli ETEC H10407
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:20802035
has_exact_synonym: Escherichia coli ETEC str. H10407
has_exact_synonym: Escherichia coli ETEC strain H10407
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Escherichia coli H10407
has_related_synonym: Escherichia coli strain H10407

Streptococcus pyogenes MGAS6180
type: Class
subclass of: Streptococcus pyogenes
subclass of: Restriction
  on property: has_part
  some values from: genome of Streptococcus pyogenes MGAS6180
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Streptococcus pyogenes str. MGAS6180
has_exact_synonym: Streptococcus pyogenes strain MGAS6180
有_obo_命名空间: ncbi_taxonomy

Campylobacter jejuni subsp. jejuni
type: Class
subclass of: Campylobacter jejuni
subclass of: Restriction
  on property: has_part
  some values from: genome of Campylobacter jejuni subsp. jejuni
imported from: ncbitaxon.owl
has_rank: NCBITaxon subspecies
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:11321120
has_exact_synonym: Campylobacter jejuni jejuni
有_obo_命名空间: ncbi_taxonomy

Burkholderia pseudomallei 1710b
type: Class
subclass of: Burkholderia pseudomallei
subclass of: Restriction
  on property: has_part
  some values from: genome of Burkholderia pseudomallei 1710b
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Burkholderia pseudomallei str. 1710b
has_exact_synonym: Burkholderia pseudomallei strain 1710b
有_obo_命名空间: ncbi_taxonomy

Burkholderia pseudomallei 668
type: Class
subclass of: Burkholderia pseudomallei
subclass of: Restriction
  on property: has_part
  some values from: genome of Burkholderia pseudomallei 668
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Burkholderia pseudomallei str. 668
has_exact_synonym: Burkholderia pseudomallei strain 668
有_obo_命名空间: ncbi_taxonomy

Burkholderia mallei SAVP1
type: Class
subclass of: Burkholderia mallei
subclass of: Restriction
  on property: has_part
  some values from: genome of Burkholderia mallei SAVP1
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Burkholderia mallei str. SAVP1
has_exact_synonym: Burkholderia mallei strain SAVP1
有_obo_命名空间: ncbi_taxonomy

Burkholderia mallei NCTC 10247
type: Class
subclass of: Burkholderia mallei
subclass of: Restriction
  on property: has_part
  some values from: genome of Burkholderia mallei NCTC 10247
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Burkholderia mallei str. NCTC 10247
has_exact_synonym: Burkholderia mallei strain NCTC 10247
有_obo_命名空间: ncbi_taxonomy

Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67
type: Class
subclass of: Salmonella enterica subsp. enterica
subclass of: Restriction
  on property: has_part
  some values from: genome of Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Salmonella enterica subsp. enterica serovar Choleraesuis SC-B67
has_exact_synonym: Salmonella enterica subsp. enterica serovar Choleraesuis strain SC-B67
有_obo_命名空间: ncbi_taxonomy

Tetrapoda
type: Class
subclass of: Euteleostomi
editor preferred label: Tetrapoda
alternative term: tetrapods
imported from: ncbitaxon.owl

Amniota
type: Class
subclass of: Tetrapoda
editor preferred label: Amniota
alternative term: amniotes
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:1
has_exact_synonym: amniotes
有_obo_命名空间: ncbi_taxonomy

Aspergillus fumigatus Af293
type: Class
subclass of: Trichocomaceae
subclass of: Fungi
subclass of: Restriction
  on property: has_part
  some values from: genome of Aspergillus fumigatus Af293
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
id: NCBITaxon:330879

Viridiplantae
type: Class
subclass of: Eukaryota
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: plant-
id: NCBITaxon:33090

Axiom
annotated source: Viridiplantae
annotated property: has_related_synonym
annotated target: plant-
数据库_交叉_引用: PRO:DAN
has_synonym_type: Unique short label for PRO terms for display purposes; based on orthology

Escherichia coli E24377A
type: Class
subclass of: Escherichia coli
subclass of: Restriction
  on property: has_part
  some values from: genome of Escherichia coli E24377A
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:18676672
has_exact_synonym: Escherichia coli str. E24377A
has_exact_synonym: Escherichia coli strain E24377A
有_obo_命名空间: ncbi_taxonomy

Escherichia coli HS
type: Class
subclass of: Escherichia coli
subclass of: Restriction
  on property: has_part
  some values from: genome of Escherichia coli HS
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:18676672
has_exact_synonym: Escherichia coli str. HS
has_exact_synonym: Escherichia coli strain HS
有_obo_命名空间: ncbi_taxonomy

Opisthokonta
type: Class
subclass of: Eukaryota
subclass of: Restriction
  on property: has_part
  some values from: genome of Opisthokonta
editor preferred label: Opisthokonta
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Fungi/Metazoa group
has_related_synonym: opisthokonts
id: NCBITaxon:33154

Onygenales
type: Class
subclass of: Eurotiomycetidae
subclass of: Restriction
  on property: has_part
  some values from: genome of Onygenales
imported from: ncbitaxon.owl
has_rank: NCBITaxon order
has_alternative_id: NCBITaxon:259362
has_alternative_id: NCBITaxon:36053
has_alternative_id: NCBITaxon:5102
数据库_交叉_引用: GC_ID:1
数据库_交叉_引用: PMID:17486980
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Gymnoascales

Metazoa
type: Class
subclass of: Opisthokonta
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: metazoan-
id: NCBITaxon:33208

Axiom
annotated source: Metazoa
annotated property: has_related_synonym
annotated target: metazoan-
数据库_交叉_引用: PRO:DAN
has_synonym_type: Unique short label for PRO terms for display purposes; based on orthology

Bilateria
type: Class
subclass of: Opisthokonta
subclass of: Restriction
  on property: has_part
  some values from: genome of Bilateria
editor preferred label: Bilateria
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy

Holometabola
type: Class
subclass of: Ecdysozoa
imported from: ncbitaxon.owl
has_rank: NCBITaxon cohort
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Endopterygota

Mycobacterium tuberculosis F11
type: Class
subclass of: Mycobacterium tuberculosis
subclass of: Restriction
  on property: has_part
  some values from: genome of Mycobacterium tuberculosis F11
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Mycobacterium tuberculosis str. F11
has_exact_synonym: Mycobacterium tuberculosis strain F11
有_obo_命名空间: ncbi_taxonomy

Suid herpesvirus 1 strain Kaplan
type: Class
subclass of: Suid alphaherpesvirus 1
subclass of: Restriction
  on property: has_part
  some values from: genome of Suid herpesvirus 1 strain Kaplan
imported from: ncbitaxon.owl
has_alternative_id: NCBITaxon:10348
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Pseudorabies virus (STRAIN KA)
has_related_synonym: Pseudorabies virus (strain Kaplan)
has_related_synonym: Suid herpesvirus 1 (strain KA)
has_related_synonym: Suid herpesvirus 1 (strain Kaplan)

Muroidea
type: Class
subclass of: Rodentia
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:1
数据库_交叉_引用: PMID:15019624
数据库_交叉_引用: PMID:15371245
有_obo_命名空间: ncbi_taxonomy

Actinobacillus pleuropneumoniae serovar 2
type: Class
subclass of: Actinobacillus pleuropneumoniae
subclass of: Restriction
  on property: has_part
  some values from: genome of Actinobacillus pleuropneumoniae serovar 2
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Actinobacillus pleuropneumoniae 2
has_related_synonym: Actinobacillus pleuropneumoniae serotype 2

Streptococcus pyogenes serotype M12
type: Class
subclass of: Streptococcus pyogenes
subclass of: Restriction
  on property: has_part
  some values from: genome of Streptococcus pyogenes serotype M12
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
有_obo_命名空间: ncbi_taxonomy

Shigella boydii CDC 3083-94
type: Class
subclass of: Shigella boydii
subclass of: Restriction
  on property: has_part
  some values from: genome of Shigella boydii CDC 3083-94
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Shigella boydii str. CDC 3083-94
has_exact_synonym: Shigella boydii strain CDC 3083-94
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Shigella boydii BS512

SARS coronavirus ZJ0301
type: Class
subclass of: Severe acute respiratory syndrome-related coronavirus
subclass of: Restriction
  on property: has_part
  some values from: genome of SARS coronavirus ZJ0301
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy

Vibrio cholerae O395
type: Class
subclass of: Vibrio cholerae
subclass of: Restriction
  on property: has_part
  some values from: genome of Vibrio cholerae O395
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Vibrio cholerae str. O395
has_exact_synonym: Vibrio cholerae strain O395
有_obo_命名空间: ncbi_taxonomy

Leishmania major strain Friedlin
type: Class
subclass of: Leishmania major
subclass of: Restriction
  on property: has_part
  some values from: genome of Leishmania major strain Friedlin
imported from: ncbitaxon.owl
has_broad_synonym: LmjF
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Leishmania major MHOM/IL/81/Friedlin

Yersinia pestis Angola
type: Class
subclass of: Yersinia pestis
subclass of: Restriction
  on property: has_part
  some values from: genome of Yersinia pestis Angola
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:20061468
has_exact_synonym: Yersinia pestis str. Angola
has_exact_synonym: Yersinia pestis strain Angola
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Yersinia pestis Angola O.Pe.3

Yersinia pseudotuberculosis IP 31758
type: Class
subclass of: Yersinia pseudotuberculosis
subclass of: Restriction
  on property: has_part
  some values from: genome of Yersinia pseudotuberculosis IP 31758
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Yersinia pseudotuberculosis str. IP 31758
has_exact_synonym: Yersinia pseudotuberculosis strain IP 31758
有_obo_命名空间: ncbi_taxonomy

dsDNA viruses, no RNA stage
type: Class
subclass of: Viruses
subclass of: Restriction
  on property: has_part
  some values from: genome of dsDNA viruses, no RNA stage
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: dsDNA viruses

Bovine herpesvirus 5
type: Class
subclass of: Varicellovirus
subclass of: Restriction
  on property: has_part
  some values from: genome of Bovine herpesvirus 5
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_alternative_id: NCBITaxon:12593
has_alternative_id: NCBITaxon:36349
has_broad_synonym: BoHV-5
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Bovine encephalitis herpesvirus
has_related_synonym: Bovine herpesvirus type 5

Retro-transcribing viruses
type: Class
subclass of: Viruses
editor preferred label: Retro-transcribing viruses
imported from: ncbitaxon.owl

ssRNA positive-strand viruses, no DNA stage
type: Class
subclass of: ssRNA viruses
subclass of: Restriction
  on property: has_part
  some values from: genome of ssRNA positive-strand viruses, no DNA stage
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy

Plasmodium yoelii yoelii 17XNL
type: Class
subclass of: Plasmodium yoelii yoelii
subclass of: Restriction
  on property: has_part
  some values from: genome of Plasmodium yoelii yoelii 17XNL
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Plasmodium yoelii yoelii str. 17XNL

ssRNA negative-strand viruses
type: Class
subclass of: ssRNA viruses
subclass of: Restriction
  on property: has_part
  some values from: genome of ssRNA negative-strand viruses
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy

Cryptosporidium parvum Iowa II
type: Class
subclass of: Eimeriorina
subclass of: Restriction
  on property: has_part
  some values from: genome of Cryptosporidium parvum Iowa II
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Cryptosporidium parvum strain Iowa type II

Trypanosoma cruzi strain CL Brener
type: Class
subclass of: Trypanosoma cruzi
subclass of: Restriction
  on property: has_part
  some values from: genome of Trypanosoma cruzi strain CL Brener
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
id: NCBITaxon:353153

Campylobacter jejuni subsp. jejuni 81-176
type: Class
subclass of: Campylobacter jejuni subsp. jejuni
subclass of: Restriction
  on property: has_part
  some values from: genome of Campylobacter jejuni subsp. jejuni 81-176
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Campylobacter jejuni subsp. jejuni str. 81-176
has_exact_synonym: Campylobacter jejuni subsp. jejuni strain 81-176
有_obo_命名空间: ncbi_taxonomy

Rhizobiales
type: Class
subclass of: Alphaproteobacteria
subclass of: Restriction
  on property: has_part
  some values from: genome of Rhizobiales
imported from: ncbitaxon.owl
has_rank: NCBITaxon order
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:16403855
数据库_交叉_引用: PMID:1854635
has_exact_synonym: rhizobacteria
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: 'Rhizobiales'
has_related_synonym: Rhizobiaceae group
has_related_synonym: alpha-2 proteobacteria

Dictyochales
type: Class
subclass of: Eukaryota
subclass of: Restriction
  on property: has_part
  some values from: genome of Dictyochales
imported from: ncbitaxon.owl
has_rank: NCBITaxon order
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy

Burkholderia pseudomallei 1106a
type: Class
subclass of: Burkholderia pseudomallei
subclass of: Restriction
  on property: has_part
  some values from: genome of Burkholderia pseudomallei 1106a
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Burkholderia pseudomallei str. 1106a
has_exact_synonym: Burkholderia pseudomallei strain 1106a
有_obo_命名空间: ncbi_taxonomy

Brucella abortus 2308
type: Class
subclass of: Brucella abortus
subclass of: Restriction
  on property: has_part
  some values from: genome of Brucella melitensis biovar Abortus 2308
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:16299333
数据库_交叉_引用: PMID:20462421
has_exact_synonym: Brucella melitensis biovar Abortus str. 2308
has_exact_synonym: Brucella melitensis biovar Abortus strain 2308
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: BmelAbo2308-
id: NCBITaxon:359391
label: Brucella melitensis biovar Abortus 2308

Axiom
annotated source: Brucella abortus 2308
annotated property: has_related_synonym
annotated target: BmelAbo2308-
数据库_交叉_引用: PRO:DAN
has_synonym_type: Unique short label for PRO terms for display purposes; based on orthology

Bartonella bacilliformis KC583
type: Class
subclass of: Bartonella
subclass of: Restriction
  on property: has_part
  some values from: genome of Bartonella bacilliformis KC583
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Bartonella bacilliformis str. KC583
has_exact_synonym: Bartonella bacilliformis strain KC583
有_obo_命名空间: ncbi_taxonomy

Yersinia pestis Antiqua
type: Class
subclass of: Yersinia pestis
subclass of: Restriction
  on property: has_part
  some values from: genome of Yersinia pestis Antiqua
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Yersinia pestis str. Antiqua
has_exact_synonym: Yersinia pestis strain Antiqua
有_obo_命名空间: ncbi_taxonomy

Campylobacter jejuni subsp. doylei 269.97
type: Class
subclass of: Campylobacter jejuni
subclass of: Restriction
  on property: has_part
  some values from: genome of Campylobacter jejuni subsp. doylei 269.97
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Campylobacter jejuni subsp. doylei str. 269.97
has_exact_synonym: Campylobacter jejuni subsp. doylei strain 269.97
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Campylobacter jejuni subsp. doylei 362.97

Bordetella avium 197N
type: Class
subclass of: Bordetella
subclass of: Restriction
  on property: has_part
  some values from: genome of Bordetella avium 197N
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Bordetella avium str. 197N
has_exact_synonym: Bordetella avium strain 197N
有_obo_命名空间: ncbi_taxonomy

Escherichia coli 536
type: Class
subclass of: Escherichia coli
subclass of: Restriction
  on property: has_part
  some values from: genome of Escherichia coli 536
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:16912116
has_exact_synonym: Escherichia coli str. 536
has_exact_synonym: Escherichia coli strain 536
有_obo_命名空间: ncbi_taxonomy

Plasmodium falciparum 3D7
type: Class
subclass of: Plasmodium
subclass of: Plasmodium falciparum
subclass of: Restriction
  on property: has_part
  some values from: genome of Plasmodium falciparum 3D7
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: PLASMODIUM FALCIPARUM (ISOLATE 3D7).
has_related_synonym: Plasmodium falciparum (isolate 3D7)
id: NCBITaxon:36329

Escherichia coli UTI89
type: Class
subclass of: Escherichia coli
subclass of: Restriction
  on property: has_part
  some values from: genome of Escherichia coli UTI89
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Escherichia coli str. UTI89
has_exact_synonym: Escherichia coli strain UTI89
有_obo_命名空间: ncbi_taxonomy

Rotavirus C
type: Class
subclass of: Rotavirus
subclass of: Restriction
  on property: has_part
  some values from: genome of Rotavirus C
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_alternative_id: NCBITaxon:10977
has_alternative_id: NCBITaxon:28878
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Group C rotaviruses
has_related_synonym: Rotavirus group C
has_related_synonym: group C rotavirus

Cryptococcus gattii WM276
type: Class
subclass of: Cryptococcus <basidiomycete yeast>
imported from: ncbitaxon.owl
has_alternative_id: NCBITaxon:381766
has_alternative_id: NCBITaxon:548158
数据库_交叉_引用: GC_ID:1
has_exact_synonym: Cryptococcus bacillisporus VGI WM276
has_exact_synonym: Cryptococcus bacillisporus WM276
has_exact_synonym: Cryptococcus neoformans WM276
有_obo_命名空间: ncbi_taxonomy

Clostridium botulinum A
type: Class
subclass of: Clostridium botulinum
subclass of: Restriction
  on property: has_part
  some values from: genome of Clostridium botulinum A
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:8863443
有_obo_命名空间: ncbi_taxonomy

Streptococcus pyogenes MGAS9429
type: Class
subclass of: Streptococcus pyogenes serotype M12
subclass of: Restriction
  on property: has_part
  some values from: genome of Streptococcus pyogenes MGAS9429
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:16636287
has_exact_synonym: Streptococcus pyogenes str. MGAS9429
has_exact_synonym: Streptococcus pyogenes strain MGAS9429
有_obo_命名空间: ncbi_taxonomy

Streptococcus pyogenes MGAS10270
type: Class
subclass of: Streptococcus pyogenes
subclass of: Restriction
  on property: has_part
  some values from: genome of Streptococcus pyogenes MGAS10270
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:16636287
has_exact_synonym: Streptococcus pyogenes str. MGAS10270
has_exact_synonym: Streptococcus pyogenes strain MGAS10270
有_obo_命名空间: ncbi_taxonomy

Streptococcus pyogenes MGAS2096
type: Class
subclass of: Streptococcus pyogenes serotype M12
subclass of: Restriction
  on property: has_part
  some values from: genome of Streptococcus pyogenes MGAS2096
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:16636287
has_exact_synonym: Streptococcus pyogenes str. MGAS2096
has_exact_synonym: Streptococcus pyogenes strain MGAS2096
有_obo_命名空间: ncbi_taxonomy

Streptococcus pyogenes MGAS10750
type: Class
subclass of: Streptococcus pyogenes
subclass of: Restriction
  on property: has_part
  some values from: genome of Streptococcus pyogenes MGAS10750
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:16636287
has_exact_synonym: Streptococcus pyogenes str. MGAS10750
has_exact_synonym: Streptococcus pyogenes strain MGAS10750
有_obo_命名空间: ncbi_taxonomy

Streptococcus pneumoniae D39
type: Class
subclass of: Streptococcus pneumoniae
subclass of: Restriction
  on property: has_part
  some values from: genome of Streptococcus pneumoniae D39
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Streptococcus pneumoniae str. D39
has_exact_synonym: Streptococcus pneumoniae strain D39
有_obo_命名空间: ncbi_taxonomy
id: NCBITaxon:373153

Shigella flexneri 5 str. 8401
type: Class
subclass of: Shigella flexneri
subclass of: Restriction
  on property: has_part
  some values from: genome of Shigella flexneri 5 str. 8401
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:16822325
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Shigella flexneri 5 strain 8401

Neisseria meningitidis 053442
type: Class
subclass of: Neisseria meningitidis serogroup C
subclass of: Restriction
  on property: has_part
  some values from: genome of Neisseria meningitidis 053442
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Neisseria meningitidis str. 053442
has_exact_synonym: Neisseria meningitidis strain 053442
有_obo_命名空间: ncbi_taxonomy

Francisella tularensis subsp. holarctica LVS
type: Class
subclass of: Francisella tularensis subsp. holarctica
subclass of: Restriction
  on property: has_part
  some values from: genome of Francisella tularensis subsp. holarctica LVS
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Francisella tularensis subsp. holarctica str. LVS
has_exact_synonym: Francisella tularensis subsp. holarctica strain LVS
有_obo_命名空间: ncbi_taxonomy

Escherichia coli O26:H-
type: Class
subclass of: Escherichia coli
subclass of: Restriction
  on property: has_part
  some values from: genome of Escherichia coli O26:H-
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
有_obo_命名空间: ncbi_taxonomy

Yersinia pestis Nepal516
type: Class
subclass of: Yersinia pestis
subclass of: Restriction
  on property: has_part
  some values from: genome of Yersinia pestis Nepal516
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Yersinia pestis str. Nepal516
has_exact_synonym: Yersinia pestis strain Nepal516
有_obo_命名空间: ncbi_taxonomy

Aeromonas salmonicida subsp. salmonicida A449
type: Class
subclass of: Gammaproteobacteria
subclass of: Restriction
  on property: has_part
  some values from: genome of Aeromonas salmonicida subsp. salmonicida A449
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:18801193
has_exact_synonym: Aeromonas salmonicida subsp. salmonicida str. A449
has_exact_synonym: Aeromonas salmonicida subsp. salmonicida strain A449
有_obo_命名空间: ncbi_taxonomy

Bartonella tribocorum CIP 105476
type: Class
subclass of: Bartonella
subclass of: Restriction
  on property: has_part
  some values from: genome of Bartonella tribocorum CIP 105476
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Bartonella tribocorum str. CIP 105476
has_exact_synonym: Bartonella tribocorum strain CIP 105476
有_obo_命名空间: ncbi_taxonomy

Bartonella henselae
type: Class
subclass of: Bartonella
subclass of: Restriction
  on property: has_part
  some values from: genome of Bartonella henselae
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_alternative_id: NCBITaxon:806
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:1371515
数据库_交叉_引用: PMID:8240958
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Rochalimaea henselae

Leishmania <subgenus>
type: Class
subclass of: Trypanosomatidae
subclass of: Restriction
  on property: has_part
  some values from: genome of Leishmania <subgenus>
imported from: ncbitaxon.owl
has_rank: NCBITaxon subgenus
数据库_交叉_引用: GC_ID:1
has_exact_synonym: Leishmania
有_obo_命名空间: ncbi_taxonomy

Leishmania donovani species complex
type: Class
subclass of: Leishmania <subgenus>
subclass of: Restriction
  on property: has_part
  some values from: genome of Leishmania donovani species complex
imported from: ncbitaxon.owl
has_rank: NCBITaxon species group
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy

Escherichia coli O157:H7 str. Sakai
type: Class
subclass of: Escherichia coli O157:H7
subclass of: Restriction
  on property: has_part
  some values from: genome of Escherichia coli O157:H7 str. Sakai
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Escherichia coli O157:H7 strain Sakai
有_obo_命名空间: ncbi_taxonomy

Yersinia pestis Pestoides F
type: Class
subclass of: Yersinia pestis
subclass of: Restriction
  on property: has_part
  some values from: genome of Yersinia pestis Pestoides F
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:17966401
has_exact_synonym: Yersinia pestis str. Pestoides F
has_exact_synonym: Yersinia pestis strain Pestoides F
有_obo_命名空间: ncbi_taxonomy

Medicago sativa
type: Class
subclass of: Viridiplantae
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_alternative_id: NCBITaxon:56147
数据库_交叉_引用: GC_ID:1
has_exact_synonym: alfalfa
has_exact_synonym: lucerne
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Medicago sativa subsp. sativa
has_related_synonym: alfalfa
id: NCBITaxon:3879

Axiom
annotated source: Medicago sativa
annotated property: has_related_synonym
annotated target: alfalfa
has_synonym_type: Label appended to organism-specific terms in place of scientific name

Murinae
type: Class
subclass of: Muridae
editor preferred label: Murinae
imported from: ncbitaxon.owl
has_rank: NCBITaxon subfamily
has_alternative_id: NCBITaxon:109679
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy

Yersinia enterocolitica subsp. enterocolitica 8081
type: Class
subclass of: Yersinia enterocolitica subsp. enterocolitica
subclass of: Yersinia enterocolitica
subclass of: Restriction
  on property: has_part
  some values from: genome of Yersinia enterocolitica subsp. enterocolitica 8081
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Yersinia enterocolitica subsp. enterocolitica str. 8081
has_exact_synonym: Yersinia enterocolitica subsp. enterocolitica strain 8081
有_obo_命名空间: ncbi_taxonomy
id: NCBITaxon:393305

Circoviridae
type: Class
subclass of: Viruses
subclass of: Restriction
  on property: has_part
  some values from: genome of Circoviridae
imported from: ncbitaxon.owl
has_rank: NCBITaxon family
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy

Legionella pneumophila str. Corby
type: Class
subclass of: Legionella pneumophila
subclass of: Restriction
  on property: has_part
  some values from: genome of Legionella pneumophila str. Corby
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Legionella pneumophila 'Corby'
has_exact_synonym: Legionella pneumophila strain Corby
有_obo_命名空间: ncbi_taxonomy

Cryptococcus neoformans var. neoformans
type: Class
subclass of: Cryptococcus neoformans
subclass of: Restriction
  on property: has_part
  some values from: genome of Cryptococcus neoformans var. neoformans
imported from: ncbitaxon.owl
has_rank: NCBITaxon varietas
has_alternative_id: NCBITaxon:135857
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Cryptococcus neoformans serotype D
has_related_synonym: Filobasidiella neoformans var. neoformans

Escherichia coli APEC O1
type: Class
subclass of: Escherichia coli
subclass of: Restriction
  on property: has_part
  some values from: genome of Escherichia coli APEC O1
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:17293413
has_exact_synonym: Escherichia coli str. APEC O1
has_exact_synonym: Escherichia coli strain APEC O1
有_obo_命名空间: ncbi_taxonomy

Mammalia
type: Class
subclass of: Amniota
subclass of: Metazoa
editor preferred label: Mammalia
alternative term: mammals
imported from: ncbitaxon.owl
has_exact_synonym: mammal
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: mammal-
id: NCBITaxon:40674

Axiom
annotated source: Mammalia
annotated property: has_exact_synonym
annotated target: mammal
has_synonym_type: Label appended to organism-specific terms in place of scientific name

Axiom
annotated source: Mammalia
annotated property: has_related_synonym
annotated target: mammal-
数据库_交叉_引用: PRO:DAN
has_synonym_type: Unique short label for PRO terms for display purposes; based on orthology

Campylobacter jejuni subsp. jejuni 81116
type: Class
subclass of: Campylobacter jejuni subsp. jejuni
subclass of: Restriction
  on property: has_part
  some values from: genome of Campylobacter jejuni subsp. jejuni 81116
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:17873037
has_exact_synonym: Campylobacter jejuni subsp. jejuni str. 81116
has_exact_synonym: Campylobacter jejuni subsp. jejuni strain 81116
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Campylobacter jejuni subsp. jejuni NCTC 11828

Escherichia coli SE11
type: Class
subclass of: Escherichia coli
subclass of: Restriction
  on property: has_part
  some values from: genome of Escherichia coli SE11
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Escherichia coli str. SE11
has_exact_synonym: Escherichia coli strain SE11
有_obo_命名空间: ncbi_taxonomy

Burkholderia mallei NCTC 10229
type: Class
subclass of: Burkholderia mallei
subclass of: Restriction
  on property: has_part
  some values from: genome of Burkholderia mallei NCTC 10229
imported from: ncbitaxon.owl
has_alternative_id: NCBITaxon:320386
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Burkholderia mallei str. 10229
has_exact_synonym: Burkholderia mallei strain 10229
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Burkholderia mallei 10229

Yersinia pestis CA88-4125
type: Class
subclass of: Yersinia pestis
subclass of: Restriction
  on property: has_part
  some values from: genome of Yersinia pestis CA88-4125
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Yersinia pestis str. CA88-4125
has_exact_synonym: Yersinia pestis strain CA88-4125
有_obo_命名空间: ncbi_taxonomy

Escherichia coli B str. REL606
type: Class
subclass of: Escherichia coli
subclass of: Restriction
  on property: has_part
  some values from: genome of Escherichia coli B str. REL606
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Escherichia coli B (REL606 strain)
has_exact_synonym: Escherichia coli B strain REL606
has_exact_synonym: Escherichia coli str. B substr. REL606
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Escherichia coli B str. Bc251

Actinobacillus pleuropneumoniae serovar 5b str. L20
type: Class
subclass of: Actinobacillus pleuropneumoniae
subclass of: Restriction
  on property: has_part
  some values from: genome of Actinobacillus pleuropneumoniae serovar 5b str. L20
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:18065534
has_exact_synonym: Actinobacillus pleuropneumoniae serovar 5b strain L20
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Actinobacillus pleuropneumoniae L20

Plasmodium (Vinckeia)
type: Class
subclass of: Plasmodium
subclass of: Restriction
  on property: has_part
  some values from: genome of Plasmodium (Vinckeia)
imported from: ncbitaxon.owl
has_rank: NCBITaxon subgenus
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Vinckeia

Staphylococcus aureus subsp. aureus Mu3
type: Class
subclass of: Staphylococcus aureus subsp. aureus
subclass of: Restriction
  on property: has_part
  some values from: genome of Staphylococcus aureus subsp. aureus Mu3
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Staphylococcus aureus subsp. aureus str. Mu3
has_exact_synonym: Staphylococcus aureus subsp. aureus strain Mu3
有_obo_命名空间: ncbi_taxonomy
id: NCBITaxon:418127

Mycobacterium tuberculosis H37Ra
type: Class
subclass of: Mycobacterium tuberculosis
subclass of: Restriction
  on property: has_part
  some values from: genome of Mycobacterium tuberculosis H37Ra
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Mycobacterium tuberculosis str. H37Ra
has_exact_synonym: Mycobacterium tuberculosis strain H37Ra
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Mycobacterium tuberculosis ATCC 25177

Eimeriorina
type: Class
subclass of: Apicomplexa
subclass of: Restriction
  on property: has_part
  some values from: genome of Eimeriorina
imported from: ncbitaxon.owl
has_rank: NCBITaxon suborder
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy

Legionella pneumophila 2300/99 Alcoy
type: Class
subclass of: Legionella pneumophila serogroup 1
subclass of: Restriction
  on property: has_part
  some values from: genome of Legionella pneumophila 2300/99 Alcoy
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Legionella pneumophila str. 2300/99 Alcoy
has_exact_synonym: Legionella pneumophila strain 2300/99 Alcoy
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Legionella pneumophila 2300/99

Candida dubliniensis
type: Class
subclass of: Candida
subclass of: Restriction
  on property: has_part
  some values from: genome of Candida dubliniensis
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:12
有_obo_命名空间: ncbi_taxonomy

Staphylococcus aureus subsp. aureus str. Newman
type: Class
subclass of: Staphylococcus aureus subsp. aureus
subclass of: Restriction
  on property: has_part
  some values from: genome of Staphylococcus aureus subsp. aureus str. Newman
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:17951380
has_exact_synonym: Staphylococcus aureus subsp. aureus strain Newman
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Staphylococcus aureus subsp. aureus Newman
id: NCBITaxon:426430

Shigella flexneri 2a
type: Class
subclass of: Shigella flexneri
subclass of: Restriction
  on property: has_part
  some values from: genome of Shigella flexneri 2a
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Shigella flexneri serotype 2a

Actinobacillus pleuropneumoniae serovar 3 str. JL03
type: Class
subclass of: Actinobacillus pleuropneumoniae
subclass of: Restriction
  on property: has_part
  some values from: genome of Actinobacillus pleuropneumoniae serovar 3 str. JL03
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
有_obo_命名空间: ncbi_taxonomy

ssRNA viruses
type: Class
subclass of: Viruses
subclass of: Restriction
  on property: has_part
  some values from: genome of ssRNA viruses
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy

Escherichia coli SMS-3-5
type: Class
subclass of: Escherichia coli
subclass of: Restriction
  on property: has_part
  some values from: genome of Escherichia coli SMS-3-5
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:18708504
has_exact_synonym: Escherichia coli str. SMS-3-5
has_exact_synonym: Escherichia coli strain SMS-3-5
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Escherichia coli SECEC SMS-3-5

Clostridium botulinum A str. ATCC 19397
type: Class
subclass of: Clostridium botulinum A
subclass of: Restriction
  on property: has_part
  some values from: genome of Clostridium botulinum A str. ATCC 19397
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Clostridium botulinum A ATCC 19397
has_exact_synonym: Clostridium botulinum A strain ATCC 19397
有_obo_命名空间: ncbi_taxonomy

Clostridium botulinum A str. Hall
type: Class
subclass of: Clostridium botulinum A
subclass of: Restriction
  on property: has_part
  some values from: genome of Clostridium botulinum A str. Hall
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Clostridium botulinum A strain Hall
有_obo_命名空间: ncbi_taxonomy
id: NCBITaxon:441771

Escherichia coli O157:H7 str. EC4115
type: Class
subclass of: Escherichia coli O157:H7
subclass of: Restriction
  on property: has_part
  some values from: genome of Escherichia coli O157:H7 str. EC4115
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
有_obo_命名空间: ncbi_taxonomy

Borrelia burgdorferi 156a
type: Class
subclass of: Borrelia burgdorferi
subclass of: Restriction
  on property: has_part
  some values from: genome of Borrelia burgdorferi 156a
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:20935092
has_exact_synonym: Borrelia burgdorferi str. 156a
has_exact_synonym: Borrelia burgdorferi strain 156a
有_obo_命名空间: ncbi_taxonomy

Borrelia burgdorferi ZS7
type: Class
subclass of: Borrelia burgdorferi
subclass of: Restriction
  on property: has_part
  some values from: genome of Borrelia burgdorferi ZS7
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:20935092
has_exact_synonym: Borrelia burgdorferi str. ZS7
has_exact_synonym: Borrelia burgdorferi strain ZS7
有_obo_命名空间: ncbi_taxonomy

Legionella pneumophila
type: Class
subclass of: Legionellales
subclass of: Restriction
  on property: has_part
  some values from: genome of Legionella pneumophila
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:434652
有_obo_命名空间: ncbi_taxonomy

Dictyostelium discoideum
type: Class
subclass of: Amoebozoa
editor preferred label: Dictyostelium discoideum
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:1
has_exact_synonym: slime mold
有_obo_命名空间: ncbi_taxonomy
id: NCBITaxon:44689

Axiom
annotated source: Dictyostelium discoideum
annotated property: has_exact_synonym
annotated target: slime mold
has_synonym_type: Label appended to organism-specific terms in place of scientific name

Dikarya
type: Class
subclass of: Opisthokonta
subclass of: Restriction
  on property: has_part
  some values from: genome of Dikarya
imported from: ncbitaxon.owl
has_rank: NCBITaxon subkingdom
数据库_交叉_引用: GC_ID:1
数据库_交叉_引用: PMID:15689432
数据库_交叉_引用: PMID:16151185
数据库_交叉_引用: PMID:17010206
数据库_交叉_引用: PMID:17051209
数据库_交叉_引用: PMID:17572334
有_obo_命名空间: ncbi_taxonomy

Eurotiomycetidae
type: Class
subclass of: Eurotiomycetes
subclass of: Restriction
  on property: has_part
  some values from: genome of Eurotiomycetidae
imported from: ncbitaxon.owl
has_rank: NCBITaxon subclass
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy

Francisella tularensis subsp. holarctica FTNF002-00
type: Class
subclass of: Francisella tularensis subsp. holarctica
subclass of: Restriction
  on property: has_part
  some values from: genome of Francisella tularensis subsp. holarctica FTNF002-00
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Francisella tularensis subsp. holarctica str. FTNF002-00
has_exact_synonym: Francisella tularensis subsp. holarctica strain FTNF002-00
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Francisella tularensis subsp. holarctica FTA

Vibrio cholerae O139
type: Class
subclass of: Vibrio cholerae
subclass of: Restriction
  on property: has_part
  some values from: genome of Vibrio cholerae O139
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Vibrio cholerae O139 strain
has_related_synonym: Vibrio cholerae serogroup O139

Autographa californica nucleopolyhedrovirus
type: Class
subclass of: Alphabaculovirus
subclass of: Restriction
  on property: has_part
  some values from: genome of Autographa californica nucleopolyhedrovirus
imported from: ncbitaxon.owl
has_alternative_id: NCBITaxon:10446
has_broad_synonym: AcMNPV
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Autographa californica multicapsid nuclear polyhedrosis virus
has_related_synonym: Autographa californica multicapsid nuclear polyhedrosis virus AcMNPV
has_related_synonym: Autographa californica nuclear polyhedrosis virus
has_related_synonym: Autographa californica nuclear polyhedrosis virus AcMNPV
has_related_synonym: Autographa californica nuclear polyhedrosis virus AcNPV
has_related_synonym: Autographa californica nuclear polyhedrosis virus, AcMNPV

Staphylococcus aureus subsp. aureus
type: Class
subclass of: Staphylococcus aureus
subclass of: Restriction
  on property: has_part
  some values from: genome of Staphylococcus aureus subsp. aureus
imported from: ncbitaxon.owl
has_rank: NCBITaxon subspecies
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Staphylococcus aureus aureus
有_obo_命名空间: ncbi_taxonomy

Streptococcus pyogenes NZ131
type: Class
subclass of: Streptococcus pyogenes
subclass of: Restriction
  on property: has_part
  some values from: genome of Streptococcus pyogenes NZ131
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:18820018
has_exact_synonym: Streptococcus pyogenes str. NZ131
has_exact_synonym: Streptococcus pyogenes strain NZ131
有_obo_命名空间: ncbi_taxonomy

Enterococcus faecalis OG1RF
type: Class
subclass of: Enterococcus faecalis
subclass of: Restriction
  on property: has_part
  some values from: genome of Enterococcus faecalis OG1RF
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Enterococcus faecalis str. OG1RF
has_exact_synonym: Enterococcus faecalis strain OG1RF
有_obo_命名空间: ncbi_taxonomy

Fungi
type: Class
subclass of: Opisthokonta
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: fungal-
id: NCBITaxon:4751

Axiom
annotated source: Fungi
annotated property: has_related_synonym
annotated target: fungal-
数据库_交叉_引用: PRO:DAN
has_synonym_type: Unique short label for PRO terms for display purposes; based on orthology

Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594
type: Class
subclass of: Salmonella enterica subsp. enterica
subclass of: Restriction
  on property: has_part
  some values from: genome of Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Salmonella enterica subsp. enterica serovar Paratyphi C str. RKS4594
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Salmonella paratyphi C str. RKS4594
has_related_synonym: Salmonella paratyphi C strain RKS4594

Paenibacillus sp. Y412MC10
type: Class
subclass of: Bacillales
subclass of: Restriction
  on property: has_part
  some values from: genome of Paenibacillus sp. Y412MC10
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:11
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Geobacillus sp. Y412MC10

Neisseria meningitidis
type: Class
subclass of: Betaproteobacteria
subclass of: Restriction
  on property: has_part
  some values from: genome of Neisseria meningitidis
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:11
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Diplokokkus intracellularis meningitidis
has_related_synonym: Micrococcus intracellularis
has_related_synonym: Micrococcus meningitidis
has_related_synonym: Micrococcus meningitidis cerebrospinalis
has_related_synonym: Neisseria meningitidis.
has_related_synonym: Neisseria weichselbaumii

Streptococcus pneumoniae Taiwan19F-14
type: Class
subclass of: Streptococcus pneumoniae
subclass of: Restriction
  on property: has_part
  some values from: genome of Streptococcus pneumoniae Taiwan19F-14
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Streptococcus pneumoniae str. Taiwan19F-14
has_exact_synonym: Streptococcus pneumoniae strain Taiwan19F-14
有_obo_命名空间: ncbi_taxonomy

Streptococcus pneumoniae Hungary19A-6
type: Class
subclass of: Streptococcus pneumoniae
subclass of: Restriction
  on property: has_part
  some values from: genome of Streptococcus pneumoniae Hungary19A-6
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Streptococcus pneumoniae str. Hungary19A-6
has_exact_synonym: Streptococcus pneumoniae strain Hungary19A-6
有_obo_命名空间: ncbi_taxonomy

Streptococcus pneumoniae 70585
type: Class
subclass of: Streptococcus pneumoniae
subclass of: Restriction
  on property: has_part
  some values from: genome of Streptococcus pneumoniae 70585
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Streptococcus pneumoniae str. 70585
has_exact_synonym: Streptococcus pneumoniae strain 70585
有_obo_命名空间: ncbi_taxonomy

Streptococcus pneumoniae JJA
type: Class
subclass of: Streptococcus pneumoniae
subclass of: Restriction
  on property: has_part
  some values from: genome of Streptococcus pneumoniae JJA
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Streptococcus pneumoniae str. JJA
has_exact_synonym: Streptococcus pneumoniae strain JJA
有_obo_命名空间: ncbi_taxonomy

Streptococcus pneumoniae P1031
type: Class
subclass of: Streptococcus pneumoniae
subclass of: Restriction
  on property: has_part
  some values from: genome of Streptococcus pneumoniae P1031
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Streptococcus pneumoniae str. P1031
has_exact_synonym: Streptococcus pneumoniae strain P1031
有_obo_命名空间: ncbi_taxonomy

Ascomycota
type: Class
subclass of: Opisthokonta
editor preferred label: Ascomycota
alternative term: ascomycetes
alternative term: sac fungi
imported from: ncbitaxon.owl

Saccharomycetales
type: Class
subclass of: saccharomyceta
subclass of: Restriction
  on property: has_part
  some values from: genome of Saccharomycetales
imported from: ncbitaxon.owl
has_rank: NCBITaxon order
数据库_交叉_引用: GC_ID:1
has_exact_synonym: budding yeasts
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Endomycetales

Saccharomycetaceae
type: Class
subclass of: Saccharomycetales
subclass of: Restriction
  on property: has_part
  some values from: genome of Saccharomycetaceae
imported from: ncbitaxon.owl
has_rank: NCBITaxon family
has_alternative_id: NCBITaxon:221665
has_alternative_id: NCBITaxon:44280
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy

Saccharomyces cerevisiae
type: Class
subclass of: Fungi
subclass of: Saccharomycetaceae
subclass of: Restriction
  on property: has_part
  some values from: genome of Saccharomyces cerevisiae
editor preferred label: Saccharomyces cerevisiae
alternative term: baker's yeast
alternative term: brewer's yeast
alternative term: lager beer yeast
alternative term: yeast
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:1
has_exact_synonym: baker's yeast
has_exact_synonym: brewer's yeast
has_exact_synonym: lager beer yeast
has_exact_synonym: yeast
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Candida robusta
has_related_synonym: Saccaromyces cerevisiae
has_related_synonym: Saccharomyce cerevisiae
has_related_synonym: Saccharomyces capensis
has_related_synonym: Saccharomyces italicus
has_related_synonym: Saccharomyces oviformis
has_related_synonym: Saccharomyces uvarum var. melibiosus
has_related_synonym: Saccharomyes cerevisiae
has_related_synonym: Sccharomyces cerevisiae
id: NCBITaxon:4932

Clostridium botulinum B1 str. Okra
type: Class
subclass of: Clostridium botulinum
subclass of: Restriction
  on property: has_part
  some values from: genome of Clostridium botulinum B1 str. Okra
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Clostridium botulinum B1 strain Okra
有_obo_命名空间: ncbi_taxonomy

Clostridium botulinum A3 str. Loch Maree
type: Class
subclass of: Clostridium botulinum A
subclass of: Restriction
  on property: has_part
  some values from: genome of Clostridium botulinum A3 str. Loch Maree
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Clostridium botulinum A3 strain Loch Maree
有_obo_命名空间: ncbi_taxonomy

Edwardsiella tarda EIB202
type: Class
subclass of: Enterobacteriaceae
subclass of: Restriction
  on property: has_part
  some values from: genome of Edwardsiella tarda EIB202
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Edwardsiella tarda str. EIB202
has_exact_synonym: Edwardsiella tarda strain EIB202
有_obo_命名空间: ncbi_taxonomy

Yersinia pseudotuberculosis YPIII
type: Class
subclass of: Yersinia pseudotuberculosis
subclass of: Restriction
  on property: has_part
  some values from: genome of Yersinia pseudotuberculosis YPIII
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Yersinia pseudotuberculosis str. YPIII
has_exact_synonym: Yersinia pseudotuberculosis strain YPIII
有_obo_命名空间: ncbi_taxonomy

Yersinia pseudotuberculosis PB1/+
type: Class
subclass of: Yersinia pseudotuberculosis
subclass of: Restriction
  on property: has_part
  some values from: genome of Yersinia pseudotuberculosis PB1/+
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Yersinia pseudotuberculosis str. PB1/+
has_exact_synonym: Yersinia pseudotuberculosis strain PB1/+
有_obo_命名空间: ncbi_taxonomy

Ajellomyces capsulatus
type: Class
subclass of: Onygenales
subclass of: Restriction
  on property: has_part
  some values from: genome of Ajellomyces capsulatus
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_alternative_id: NCBITaxon:61255
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Ajellomyces capsulata
has_related_synonym: Ajellomyces capsulatas
has_related_synonym: Ajellomyces capsulatus
has_related_synonym: Cryptococcus capsulatus
has_related_synonym: Emmonsiella capsulata
has_related_synonym: Histoplasma capsulatum
label: Histoplasma capsulatum

Salmoninae
type: Class
subclass of: Salmonidae
imported from: ncbitaxon.owl
has_rank: NCBITaxon subfamily
数据库_交叉_引用: GC_ID:1
has_exact_synonym: trouts, salmons & chars
有_obo_命名空间: ncbi_taxonomy

Clostridium botulinum E3 str. Alaska E43
type: Class
subclass of: Clostridium botulinum
subclass of: Restriction
  on property: has_part
  some values from: genome of Clostridium botulinum E3 str. Alaska E43
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Clostridium botulinum E3 strain Alaska E43
有_obo_命名空间: ncbi_taxonomy

Toxoplasma gondii ME49
type: Class
subclass of: Toxoplasma gondii
subclass of: Restriction
  on property: has_part
  some values from: genome of Toxoplasma gondii ME49
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Toxoplasma gondii strain ME49

Escherichia coli str. K-12 substr. MG1655
type: Class
subclass of: Escherichia coli K-12
subclass of: Restriction
  on property: has_part
  some values from: genome of Escherichia coli str. K-12 substr. MG1655
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Escherichia coli str. K12 substr. MG1655
has_exact_synonym: Escherichia coli str. MG1655
has_exact_synonym: Escherichia coli strain MG1655
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Escherichia coli MG1655

Streptococcus pneumoniae G54
type: Class
subclass of: Streptococcus pneumoniae
subclass of: Restriction
  on property: has_part
  some values from: genome of Streptococcus pneumoniae G54
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Streptococcus pneumoniae str. G54
has_exact_synonym: Streptococcus pneumoniae strain G54
有_obo_命名空间: ncbi_taxonomy

Streptococcus pneumoniae CGSP14
type: Class
subclass of: Streptococcus pneumoniae
subclass of: Restriction
  on property: has_part
  some values from: genome of Streptococcus pneumoniae CGSP14
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Streptococcus pneumoniae str. CGSP14
has_exact_synonym: Streptococcus pneumoniae strain CGSP14
有_obo_命名空间: ncbi_taxonomy

Bordetella
type: Class
subclass of: Burkholderiales
subclass of: Restriction
  on property: has_part
  some values from: genome of Bordetella
imported from: ncbitaxon.owl
has_rank: NCBITaxon genus
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:11491321
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Bordetella Moreno-Lopez 1952 (Approved Lists 1980) emend. Von Wintzingerode et al. 2001

Bordetella bronchiseptica
type: Class
subclass of: Bordetella
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_alternative_id: NCBITaxon:514
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:8240949
数据库_交叉_引用: PMID:8782670
数据库_交叉_引用: PMID:9226899
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Alcaligenes bronchicanis
has_related_synonym: Alcaligenes bronchisepticus
has_related_synonym: Bacillus bronchicanis
has_related_synonym: Bacillus bronchisepticus
has_related_synonym: Bacterium bronchisepticus
has_related_synonym: Bordetella bronchiseptica@
has_related_synonym: Brucella bronchiseptica
has_related_synonym: Brucella bronchispetica
has_related_synonym: Haemophilus bronchisepticus

Bordetella pertussis
type: Class
subclass of: Bordetella
subclass of: Restriction
  on property: has_part
  some values from: genome of Bordetella pertussis
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:8240949
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Bacterium tussis-convulsivae
has_related_synonym: Haemophilus pertussis
has_related_synonym: Hemophilus pertussis
has_related_synonym: Microbe de la coqueluche

Cryptococcus <basidiomycete yeast>
type: Class
subclass of: Agaricomycotina
imported from: ncbitaxon.owl
has_rank: NCBITaxon genus
has_alternative_id: NCBITaxon:107441
has_alternative_id: NCBITaxon:192653
has_alternative_id: NCBITaxon:5415
数据库_交叉_引用: GC_ID:1
has_exact_synonym: Cryptococcus
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Filobasidiella

Cryptococcus neoformans
type: Class
subclass of: Cryptococcus <basidiomycete yeast>
subclass of: Filobasidiella/Cryptococcus neoformans species complex
subclass of: Restriction
  on property: has_part
  some values from: genome of Cryptococcus neoformans
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Blastomyces neoformans
has_related_synonym: Debaryomyces neoformans
has_related_synonym: Filobasidiella neoformans
has_related_synonym: Filobasidiella neoformornans
has_related_synonym: Filobaxidiella neoformans
has_related_synonym: Lipomyces neoformans
has_related_synonym: Saccharomyces neoformans
has_related_synonym: Torula neoformans
has_related_synonym: Torulopsis neoformans

Bordetella avium
type: Class
subclass of: Bordetella
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:4074238
有_obo_命名空间: ncbi_taxonomy

Borrelia burgdorferi N40
type: Class
subclass of: Borrelia burgdorferi
subclass of: Restriction
  on property: has_part
  some values from: genome of Borrelia burgdorferi N40
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:20935092
has_exact_synonym: Borrelia burgdorferi str. N40
has_exact_synonym: Borrelia burgdorferi strain N40
有_obo_命名空间: ncbi_taxonomy

Borrelia burgdorferi 297
type: Class
subclass of: Borrelia burgdorferi
subclass of: Restriction
  on property: has_part
  some values from: genome of Borrelia burgdorferi 297
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:20935092
has_exact_synonym: Borrelia burgdorferi str. 297
has_exact_synonym: Borrelia burgdorferi strain 297
有_obo_命名空间: ncbi_taxonomy

Agaricomycotina
type: Class
subclass of: Dikarya
imported from: ncbitaxon.owl
has_rank: NCBITaxon subphylum
数据库_交叉_引用: GC_ID:1
has_exact_synonym: Hymenomycetes
有_obo_命名空间: ncbi_taxonomy

Burkholderia pseudomallei MSHR346
type: Class
subclass of: Burkholderia pseudomallei
subclass of: Restriction
  on property: has_part
  some values from: genome of Burkholderia pseudomallei MSHR346
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Burkholderia pseudomallei str. MSHR346
has_exact_synonym: Burkholderia pseudomallei strain MSHR346
有_obo_命名空间: ncbi_taxonomy

Actinobacillus pleuropneumoniae serovar 7 str. AP76
type: Class
subclass of: Actinobacillus pleuropneumoniae
subclass of: Restriction
  on property: has_part
  some values from: genome of Actinobacillus pleuropneumoniae serovar 7 str. AP76
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Actinobacillus pleuropneumoniae serovar 7 strain AP76
有_obo_命名空间: ncbi_taxonomy

Enterobacteriaceae
type: Class
subclass of: Enterobacterales
subclass of: Restriction
  on property: has_part
  some values from: genome of Enterobacteriaceae
imported from: ncbitaxon.owl
has_rank: NCBITaxon family
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:10555323
数据库_交叉_引用: PMID:10555334
数据库_交叉_引用: PMID:16166704
数据库_交叉_引用: PMID:27620848
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Enterobacteraceae
has_related_synonym: Enterobacteraceae (ex Lapage 1979) Lapage 1982, fam. nov., nom. rev.
has_related_synonym: Enterobacteriaceae (ex Rahn 1937) Ewing et al. 1980, fam. nov., nom. rev.
has_related_synonym: Enterobacteriaceae Rahn 1937
has_related_synonym: gamma-3 proteobacteria

Escherichia coli O157:H7 str. TW14359
type: Class
subclass of: Escherichia coli O157:H7
subclass of: Restriction
  on property: has_part
  some values from: genome of Escherichia coli O157:H7 str. TW14359
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Escherichia coli O157:H7 strain TW14359
有_obo_命名空间: ncbi_taxonomy

Candida
type: Class
subclass of: Saccharomycetales
subclass of: Restriction
  on property: has_part
  some values from: genome of Candida
imported from: ncbitaxon.owl
has_rank: NCBITaxon genus
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Torulopsis

Candida albicans
type: Class
subclass of: Candida
subclass of: Restriction
  on property: has_part
  some values from: genome of Candida albicans
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_alternative_id: NCBITaxon:39399
数据库_交叉_引用: GC_ID:12
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Candida albican
has_related_synonym: Candida stellatoidea
has_related_synonym: Candida stellatoidea type I

Candida glabrata
type: Class
subclass of: Saccharomycetaceae
subclass of: Restriction
  on property: has_part
  some values from: genome of Candida glabrata
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:1
数据库_交叉_引用: PMID:14654427
has_exact_synonym: Candida glabrata
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Candidia glabrata
has_related_synonym: Cryptococcus glabratus
has_related_synonym: Torulopsis glabrata
label: [Candida] glabrata

Coccidioides
type: Class
subclass of: Onygenales
imported from: ncbitaxon.owl
has_rank: NCBITaxon genus
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy

Salmonella enterica subsp. enterica serovar Enteritidis str. P125109
type: Class
subclass of: Salmonella enterica subsp. enterica
subclass of: Restriction
  on property: has_part
  some values from: genome of Salmonella enterica subsp. enterica serovar Enteritidis str. P125109
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Salmonella enterica subsp. enterica serovar Enteritidis strain P125109
有_obo_命名空间: ncbi_taxonomy

Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91
type: Class
subclass of: Salmonella enterica subsp. enterica
subclass of: Restriction
  on property: has_part
  some values from: genome of Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Salmonella enterica subsp. enterica serovar Gallinarum strain 287/91
有_obo_命名空间: ncbi_taxonomy

Filobasidiella/Cryptococcus neoformans species complex
type: Class
subclass of: Dikarya
subclass of: Restriction
  on property: has_part
  some values from: genome of Filobasidiella/Cryptococcus neoformans species complex
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy

Cryptococcus gattii
type: Class
subclass of: Filobasidiella/Cryptococcus neoformans species complex
subclass of: Restriction
  on property: has_part
  some values from: genome of Cryptococcus gattii
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_alternative_id: NCBITaxon:292817
has_alternative_id: NCBITaxon:37768
has_alternative_id: NCBITaxon:37769
has_alternative_id: NCBITaxon:413065
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Cryptococcus bacillisporus
has_related_synonym: Cryptococcus neoformans B
has_related_synonym: Cryptococcus neoformans serotype B
has_related_synonym: Cryptococcus neoformans serotype C
has_related_synonym: Cryptococcus neoformans var. gatti
has_related_synonym: Cryptococcus neoformans var. gattii
has_related_synonym: Cryptococcus neoformans var. shanghaiensis
has_related_synonym: Filobasidiella bacillispora
has_related_synonym: Filobasidiella neoformans var. bacillispora
has_related_synonym: Filobasidiella neoformans var. gattii
has_related_synonym: anamorph of Filobasidiella bacillispora

Streptococcus equi subsp. zooepidemicus MGCS10565
type: Class
subclass of: Streptococcus
subclass of: Restriction
  on property: has_part
  some values from: genome of Streptococcus equi subsp. zooepidemicus MGCS10565
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Streptococcus equi subsp. zooepidemicus str. MGCS10565
has_exact_synonym: Streptococcus equi subsp. zooepidemicus strain MGCS10565
有_obo_命名空间: ncbi_taxonomy

Listeria monocytogenes HCC23
type: Class
subclass of: Listeria monocytogenes
subclass of: Restriction
  on property: has_part
  some values from: genome of Listeria monocytogenes HCC23
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:21602330
has_exact_synonym: Listeria monocytogenes str. HCC23
has_exact_synonym: Listeria monocytogenes strain HCC23
有_obo_命名空间: ncbi_taxonomy

Amoebozoa
type: Class
subclass of: Eukaryota
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:1
数据库_交叉_引用: PMID:23020233
有_obo_命名空间: ncbi_taxonomy

Pseudomonas aeruginosa LESB58
type: Class
subclass of: Pseudomonas aeruginosa
subclass of: Restriction
  on property: has_part
  some values from: genome of Pseudomonas aeruginosa LESB58
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:19047519
has_exact_synonym: Pseudomonas aeruginosa str. LESB58
has_exact_synonym: Pseudomonas aeruginosa strain LESB58
有_obo_命名空间: ncbi_taxonomy

Alphabaculovirus
type: Class
subclass of: dsDNA viruses, no RNA stage
subclass of: Restriction
  on property: has_part
  some values from: genome of Alphabaculovirus
imported from: ncbitaxon.owl
has_rank: NCBITaxon genus
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Nucleopolyhedrovirus

Saccharomyces cerevisiae S288c
type: Class
subclass of: Saccharomyces cerevisiae
subclass of: Restriction
  on property: has_part
  some values from: genome of Saccharomyces cerevisiae S288c
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: y
has_related_synonym: yeast
id: NCBITaxon:559292

Axiom
annotated source: Saccharomyces cerevisiae S288c
annotated property: has_related_synonym
annotated target: y
数据库_交叉_引用: PRO:DAN
has_synonym_type: Unique short label for PRO terms for display purposes; based on orthology

Axiom
annotated source: Saccharomyces cerevisiae S288c
annotated property: has_related_synonym
annotated target: yeast
数据库_交叉_引用: PRO:DAN
has_synonym_type: Label appended to organism-specific terms in place of scientific name

Streptococcus pneumoniae ATCC 700669
type: Class
subclass of: Streptococcus pneumoniae
subclass of: Restriction
  on property: has_part
  some values from: genome of Streptococcus pneumoniae ATCC 700669
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Streptococcus pneumoniae str. ATCC 700669
has_exact_synonym: Streptococcus pneumoniae strain ATCC 700669
有_obo_命名空间: ncbi_taxonomy

Escherichia coli
type: Class
subclass of: Enterobacteriaceae
subclass of: Restriction
  on property: has_part
  some values from: genome of Escherichia coli
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_alternative_id: NCBITaxon:662101
has_alternative_id: NCBITaxon:662104
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:10319482
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Bacillus coli
has_related_synonym: Bacterium coli
has_related_synonym: Bacterium coli commune
has_related_synonym: Enterococcus coli
has_related_synonym: Escherchia coli
has_related_synonym: Eschericia coli
has_related_synonym: bacterium E3
id: NCBITaxon:562

Helicobacter pylori G27
type: Class
subclass of: Helicobacter pylori
subclass of: Restriction
  on property: has_part
  some values from: genome of Helicobacter pylori G27
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:18952803
has_exact_synonym: Helicobacter pylori str. G27
has_exact_synonym: Helicobacter pylori strain G27
有_obo_命名空间: ncbi_taxonomy

Listeria monocytogenes L99
type: Class
subclass of: Listeria monocytogenes
subclass of: Restriction
  on property: has_part
  some values from: genome of Listeria monocytogenes L99
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Listeria monocytogenes str. L99
has_exact_synonym: Listeria monocytogenes strain L99
有_obo_命名空间: ncbi_taxonomy

Escherichia coli Vir68
type: Class
subclass of: Escherichia coli
subclass of: Restriction
  on property: has_part
  some values from: genome of Escherichia coli Vir68
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Escherichia coli str. Vir68
has_exact_synonym: Escherichia coli strain Vir68
有_obo_命名空间: ncbi_taxonomy

Trypanosomatidae
type: Class
subclass of: Eukaryota
subclass of: Restriction
  on property: has_part
  some values from: genome of Trypanosomatidae
imported from: ncbitaxon.owl
has_rank: NCBITaxon family
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy

Leishmania donovani
type: Class
subclass of: Leishmania donovani species complex
subclass of: Restriction
  on property: has_part
  some values from: genome of Leishmania donovani
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Leishmania (Leishmania) donovani

Leishmania major
type: Class
subclass of: Leishmania <subgenus>
subclass of: Restriction
  on property: has_part
  some values from: genome of Leishmania major
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Leishmania (Leishmania) major
has_related_synonym: Leishmania tropica major
id: NCBITaxon:5664

Leishmania mexicana
type: Class
subclass of: Leishmania <subgenus>
subclass of: Restriction
  on property: has_part
  some values from: genome of Leishmania mexicana
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Leishmania (Leishmania) mexicana

Leishmania infantum
type: Class
subclass of: Leishmania donovani species complex
subclass of: Restriction
  on property: has_part
  some values from: genome of Leishmania infantum
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_alternative_id: NCBITaxon:5662
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Leishmania (Leishmania) infantum
has_related_synonym: Leishmania donovani infantum

Bacillus anthracis str. CDC 684
type: Class
subclass of: Bacillus anthracis
subclass of: Restriction
  on property: has_part
  some values from: genome of Bacillus anthracis str. CDC 684
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Bacillus anthracis CDC 684
has_exact_synonym: Bacillus anthracis strain CDC 684
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Bacillus anthracis CDC 684/NRRL 349S/NRS 234
id: NCBITaxon:568206

Listeria monocytogenes serotype 4b str. CLIP 80459
type: Class
subclass of: Listeria monocytogenes
subclass of: Restriction
  on property: has_part
  some values from: genome of Listeria monocytogenes serotype 4b str. CLIP 80459
imported from: ncbitaxon.owl
has_alternative_id: NCBITaxon:634178
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Listeria monocytogenes serotype 4b strain CLIP 80459
has_exact_synonym: Listeria monocytogenes str. Clip80459
has_exact_synonym: Listeria monocytogenes strain Clip80459
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Listeria monocytogenes Clip80459
has_related_synonym: Listeria monocytogenes Clip81459
has_related_synonym: Listeria monocytogenes strain CLIP 80459 serovar 4b

Trypanosoma
type: Class
subclass of: Trypanosomatidae
subclass of: Restriction
  on property: has_part
  some values from: genome of Trypanosoma
imported from: ncbitaxon.owl
has_rank: NCBITaxon genus
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy

Trypanosoma brucei
type: Class
subclass of: Trypanosoma
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Trypanosoma (Trypanozoon) brucei
has_related_synonym: Trypanosoma brucei subgroup

Trypanosoma cruzi
type: Class
subclass of: Trypanosoma
subclass of: Restriction
  on property: has_part
  some values from: genome of Trypanosoma cruzi
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy

Helicobacter pylori P12
type: Class
subclass of: Helicobacter pylori
subclass of: Restriction
  on property: has_part
  some values from: genome of Helicobacter pylori P12
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Helicobacter pylori str. P12
has_exact_synonym: Helicobacter pylori strain P12
有_obo_命名空间: ncbi_taxonomy

Escherichia coli O26:H11 str. 11368
type: Class
subclass of: Escherichia coli
subclass of: Restriction
  on property: has_part
  some values from: genome of Escherichia coli O26:H11 str. 11368
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:19815525
has_exact_synonym: Escherichia coli O26:H11 11368
has_exact_synonym: Escherichia coli O26:H11 strain 11368
有_obo_命名空间: ncbi_taxonomy

Escherichia coli O127:H6 str. E2348/69
type: Class
subclass of: Escherichia coli
subclass of: Restriction
  on property: has_part
  some values from: genome of Escherichia coli O127:H6 str. E2348/69
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:18952797
has_exact_synonym: Escherichia coli O127:H6 E2348/69
has_exact_synonym: Escherichia coli O127:H6 strain E2348/69
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Escherichia coli 0127:H6 str. E2348/69

Entamoeba histolytica
type: Class
subclass of: Amoebozoa
subclass of: Restriction
  on property: has_part
  some values from: genome of Entamoeba histolytica
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy

Vibrio cholerae M66-2
type: Class
subclass of: Vibrio cholerae
subclass of: Restriction
  on property: has_part
  some values from: genome of Vibrio cholerae M66-2
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Vibrio cholerae str. M66-2
has_exact_synonym: Vibrio cholerae strain M66-2
有_obo_命名空间: ncbi_taxonomy

Apicomplexa
type: Class
subclass of: Eukaryota
subclass of: Restriction
  on property: has_part
  some values from: genome of Apicomplexa
imported from: ncbitaxon.owl
has_rank: NCBITaxon phylum
数据库_交叉_引用: GC_ID:1
has_exact_synonym: apicomplexans
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: apicomplexans

Cryptosporidium parvum
type: Class
subclass of: Eimeriorina
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy

Toxoplasma gondii
type: Class
subclass of: Eimeriorina
subclass of: Restriction
  on property: has_part
  some values from: genome of Toxoplasma gondii
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy

Plasmodium
type: Class
subclass of: Apicomplexa
subclass of: Restriction
  on property: has_part
  some values from: genome of Plasmodium
imported from: ncbitaxon.owl
has_rank: NCBITaxon genus
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy

Plasmodium berghei ANKA
type: Class
subclass of: Plasmodium (Vinckeia)
subclass of: Restriction
  on property: has_part
  some values from: genome of Plasmodium berghei ANKA
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Plasmodium berghei (strain ANKA)
has_related_synonym: Plasmodium berghei str. ANKA
has_related_synonym: Plasmodium berghei strain ANKA

Plasmodium falciparum
type: Class
subclass of: Eukaryota
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: malaria parasite
id: NCBITaxon:5833

Axiom
annotated source: Plasmodium falciparum
annotated property: has_related_synonym
annotated target: malaria parasite
数据库_交叉_引用: PRO:DAN
has_synonym_type: Label appended to organism-specific terms in place of scientific name

Escherichia coli IAI1
type: Class
subclass of: Escherichia coli
subclass of: Restriction
  on property: has_part
  some values from: genome of Escherichia coli IAI1
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Escherichia coli str. IAI1
has_exact_synonym: Escherichia coli strain IAI1
有_obo_命名空间: ncbi_taxonomy

Escherichia coli S88
type: Class
subclass of: Escherichia coli
subclass of: Restriction
  on property: has_part
  some values from: genome of Escherichia coli S88
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Escherichia coli str. S88
has_exact_synonym: Escherichia coli strain S88
有_obo_命名空间: ncbi_taxonomy

Escherichia coli 55989
type: Class
subclass of: Escherichia coli
subclass of: Restriction
  on property: has_part
  some values from: genome of Escherichia coli 55989
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
有_obo_命名空间: ncbi_taxonomy

Escherichia coli UMN026
type: Class
subclass of: Escherichia coli
subclass of: Restriction
  on property: has_part
  some values from: genome of Escherichia coli UMN026
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
有_obo_命名空间: ncbi_taxonomy
id: NCBITaxon:585056

Escherichia coli IAI39
type: Class
subclass of: Escherichia coli
subclass of: Restriction
  on property: has_part
  some values from: genome of Escherichia coli IAI39
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
有_obo_命名空间: ncbi_taxonomy
id: NCBITaxon:585057

Escherichia coli O103:H2 str. 12009
type: Class
subclass of: Escherichia coli
subclass of: Restriction
  on property: has_part
  some values from: genome of Escherichia coli O103:H2 str. 12009
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:19815525
has_exact_synonym: Escherichia coli O103:H2 strain 12009
有_obo_命名空间: ncbi_taxonomy

Escherichia coli O111:H- str. 11128
type: Class
subclass of: Escherichia coli
subclass of: Restriction
  on property: has_part
  some values from: genome of Escherichia coli O111:H- str. 11128
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:19815525
has_exact_synonym: Escherichia coli O111:H- strain 11128
有_obo_命名空间: ncbi_taxonomy

Escherichia coli ED1a
type: Class
subclass of: Escherichia coli
subclass of: Restriction
  on property: has_part
  some values from: genome of Escherichia coli ED1a
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Escherichia coli str. ED1a
has_exact_synonym: Escherichia coli strain ED1a
有_obo_命名空间: ncbi_taxonomy

Plasmodium yoelii
type: Class
subclass of: Plasmodium (Vinckeia)
subclass of: Restriction
  on property: has_part
  some values from: genome of Plasmodium yoelii
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Plasmodium yoelli

Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
type: Class
subclass of: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
subclass of: Restriction
  on property: has_part
  some values from: genome of Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
有_obo_命名空间: ncbi_taxonomy

Salmonella
type: Class
subclass of: Enterobacteriaceae
imported from: ncbitaxon.owl
has_rank: NCBITaxon genus
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:10319519
数据库_交叉_引用: PMID:10939679
数据库_交叉_引用: PMID:12072558
数据库_交叉_引用: PMID:15653929
数据库_交叉_引用: PMID:15653930
数据库_交叉_引用: PMID:3231714
数据库_交叉_引用: PMID:9731304
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Samonella

Salmonella enterica subsp. enterica
type: Class
subclass of: Enterobacteriaceae
subclass of: Restriction
  on property: has_part
  some values from: genome of Salmonella enterica subsp. enterica
imported from: ncbitaxon.owl
has_rank: NCBITaxon subspecies
has_alternative_id: NCBITaxon:149049
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:15653929
数据库_交叉_引用: PMID:15653930
数据库_交叉_引用: PMID:7149525
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Salmonella cholerae-suis subsp. cholerae-suis
has_related_synonym: Salmonella choleraesuis subsp. choleraesuis
has_related_synonym: Salmonella enterica I
has_related_synonym: Salmonella enterica subsp. I

Bacillus anthracis str. A0248
type: Class
subclass of: Bacillus anthracis
subclass of: Restriction
  on property: has_part
  some values from: genome of Bacillus anthracis str. A0248
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:17283804
has_exact_synonym: Bacillus anthracis A0248
has_exact_synonym: Bacillus anthracis strain A0248
有_obo_命名空间: ncbi_taxonomy

Helicobacter pylori B38
type: Class
subclass of: Helicobacter pylori
subclass of: Restriction
  on property: has_part
  some values from: genome of Helicobacter pylori B38
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Helicobacter pylori str. B38
has_exact_synonym: Helicobacter pylori strain B38
有_obo_命名空间: ncbi_taxonomy

Escherichia coli BW2952
type: Class
subclass of: Escherichia coli K-12
subclass of: Restriction
  on property: has_part
  some values from: genome of Escherichia coli BW2952
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Escherichia coli str. BW2952
has_exact_synonym: Escherichia coli strain BW2952
有_obo_命名空间: ncbi_taxonomy

Exophiala dermatitidis
type: Class
subclass of: Eurotiomycetes
subclass of: Restriction
  on property: has_part
  some values from: genome of Exophiala dermatitidis
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Exophilia dermatitidis
has_related_synonym: Wangiella dermatitidis

Shigella
type: Class
subclass of: Enterobacteriaceae
subclass of: Restriction
  on property: has_part
  some values from: genome of Shigella
imported from: ncbitaxon.owl
has_rank: NCBITaxon genus
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:26834722
有_obo_命名空间: ncbi_taxonomy

Shigella boydii
type: Class
subclass of: Shigella
subclass of: Restriction
  on property: has_part
  some values from: genome of Shigella boydii
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:16561743
有_obo_命名空间: ncbi_taxonomy

Shigella flexneri
type: Class
subclass of: Shigella
subclass of: Restriction
  on property: has_part
  some values from: genome of Shigella flexneri
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:11
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Shigella paradysenteriae
id: NCBITaxon:623

Caenorhabditis elegans
type: Class
subclass of: Ecdysozoa
subclass of: Metazoa
editor preferred label: Caenorhabditis elegans
alternative term: roundworm
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:1
has_exact_synonym: roundworm
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Rhabditis elegans
has_related_synonym: w
has_related_synonym: worm
id: NCBITaxon:6239

Axiom
annotated source: Caenorhabditis elegans
annotated property: has_related_synonym
annotated target: w
数据库_交叉_引用: PRO:DAN
has_synonym_type: Unique short label for PRO terms for display purposes; based on orthology

Axiom
annotated source: Caenorhabditis elegans
annotated property: has_related_synonym
annotated target: worm
数据库_交叉_引用: PRO:DAN
has_synonym_type: Label appended to organism-specific terms in place of scientific name

SARS coronavirus ExoN1
type: Class
subclass of: Severe acute respiratory syndrome-related coronavirus
subclass of: Restriction
  on property: has_part
  some values from: genome of SARS coronavirus ExoN1
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy

Yersinia <bacteria>
type: Class
subclass of: Enterobacteriaceae
subclass of: Restriction
  on property: has_part
  some values from: genome of Yersinia <bacteria>
imported from: ncbitaxon.owl
has_rank: NCBITaxon genus
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Yersinia
有_obo_命名空间: ncbi_taxonomy

Yersinia enterocolitica
type: Class
subclass of: Yersinia <bacteria>
subclass of: Restriction
  on property: has_part
  some values from: genome of Yersinia enterocolitica
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:11
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Bacterium enterocoliticum
id: NCBITaxon:630

Yersinia pestis
type: Class
subclass of: Yersinia pseudotuberculosis complex
subclass of: Restriction
  on property: has_part
  some values from: genome of Yersinia pestis
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:15084509
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Bacillus pestis
has_related_synonym: Bacterium pestis
has_related_synonym: Pasteurella pestis
has_related_synonym: Pestisella pestis
has_related_synonym: Yersinia pseudotuberculosis subsp. pestis
has_related_synonym: Ypes-
id: NCBITaxon:632

Axiom
annotated source: Yersinia pestis
annotated property: has_related_synonym
annotated target: Ypes-
数据库_交叉_引用: PRO:DAN
has_synonym_type: Unique short label for PRO terms for display purposes; based on orthology

Yersinia pseudotuberculosis
type: Class
subclass of: Yersinia pseudotuberculosis complex
subclass of: Restriction
  on property: has_part
  some values from: genome of Yersinia pseudotuberculosis
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_alternative_id: NCBITaxon:1161941
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:2223608
数据库_交叉_引用: PMID:23919959
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Bacillus pseudotuberkulosis
has_related_synonym: Bacterium pseudotuberculosis
has_related_synonym: Pasteurella lymphangitidis
has_related_synonym: Pasteurella pseudotuberculosis
has_related_synonym: Shigella pseudotuberculosis
has_related_synonym: [Pasteurella] lymphangitidis

Edwardsiella tarda
type: Class
subclass of: Enterobacterales
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_alternative_id: NCBITaxon:1471792
has_alternative_id: NCBITaxon:1471793
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:27539016
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Edwardsiella anguillimortifera
has_related_synonym: Paracolobactrum anguillimortiferum

Listeria monocytogenes 08-5923
type: Class
subclass of: Listeria monocytogenes
subclass of: Restriction
  on property: has_part
  some values from: genome of Listeria monocytogenes 08-5923
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Listeria monocytogenes str. 08-5923
has_exact_synonym: Listeria monocytogenes strain 08-5923
有_obo_命名空间: ncbi_taxonomy

Aeromonas
type: Class
subclass of: Gammaproteobacteria
imported from: ncbitaxon.owl
has_rank: NCBITaxon genus
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:11155981
数据库_交叉_引用: PMID:12067377
数据库_交叉_引用: PMID:12807216
数据库_交叉_引用: PMID:1380286
数据库_交叉_引用: PMID:1380289
数据库_交叉_引用: PMID:15388703
数据库_交叉_引用: PMID:16560691
数据库_交叉_引用: PMID:17012583
数据库_交叉_引用: PMID:17158971
数据库_交叉_引用: PMID:19567585
数据库_交叉_引用: PMID:7520733
数据库_交叉_引用: PMID:8347521
数据库_交叉_引用: PMID:8934910
有_obo_命名空间: ncbi_taxonomy

Aeromonas hydrophila
type: Class
subclass of: Aeromonas
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_alternative_id: NCBITaxon:1471787
has_alternative_id: NCBITaxon:1471788
has_alternative_id: NCBITaxon:582196
has_alternative_id: NCBITaxon:582198
has_alternative_id: NCBITaxon:582214
has_alternative_id: NCBITaxon:582215
has_alternative_id: NCBITaxon:582216
has_alternative_id: NCBITaxon:582217
has_alternative_id: NCBITaxon:582218
has_alternative_id: NCBITaxon:582219
has_alternative_id: NCBITaxon:582220
has_alternative_id: NCBITaxon:582221
has_alternative_id: NCBITaxon:582222
has_alternative_id: NCBITaxon:582223
has_alternative_id: NCBITaxon:582224
has_alternative_id: NCBITaxon:582225
has_alternative_id: NCBITaxon:582226
has_alternative_id: NCBITaxon:582228
has_alternative_id: NCBITaxon:582229
has_alternative_id: NCBITaxon:582231
has_alternative_id: NCBITaxon:582236
has_alternative_id: NCBITaxon:582237
has_alternative_id: NCBITaxon:582240
has_alternative_id: NCBITaxon:582250
has_alternative_id: NCBITaxon:582251
has_alternative_id: NCBITaxon:582253
has_alternative_id: NCBITaxon:582254
has_alternative_id: NCBITaxon:582265
has_alternative_id: NCBITaxon:582266
has_alternative_id: NCBITaxon:582267
has_alternative_id: NCBITaxon:582279
has_alternative_id: NCBITaxon:582282
has_alternative_id: NCBITaxon:582284
has_alternative_id: NCBITaxon:582286
has_alternative_id: NCBITaxon:582287
has_alternative_id: NCBITaxon:582289
has_alternative_id: NCBITaxon:582290
has_alternative_id: NCBITaxon:582291
has_alternative_id: NCBITaxon:582292
has_alternative_id: NCBITaxon:582295
has_alternative_id: NCBITaxon:582297
has_alternative_id: NCBITaxon:582299
has_alternative_id: NCBITaxon:582300
has_alternative_id: NCBITaxon:582302
has_alternative_id: NCBITaxon:582303
has_alternative_id: NCBITaxon:582304
has_alternative_id: NCBITaxon:582305
has_alternative_id: NCBITaxon:582306
has_alternative_id: NCBITaxon:582307
has_alternative_id: NCBITaxon:582308
has_alternative_id: NCBITaxon:582309
has_alternative_id: NCBITaxon:582310
has_alternative_id: NCBITaxon:582311
has_alternative_id: NCBITaxon:582312
has_alternative_id: NCBITaxon:582313
has_alternative_id: NCBITaxon:582314
has_alternative_id: NCBITaxon:582315
has_alternative_id: NCBITaxon:582316
has_alternative_id: NCBITaxon:582317
has_alternative_id: NCBITaxon:582318
has_alternative_id: NCBITaxon:582319
has_alternative_id: NCBITaxon:582320
has_alternative_id: NCBITaxon:582321
has_alternative_id: NCBITaxon:582322
has_alternative_id: NCBITaxon:582323
has_alternative_id: NCBITaxon:582324
has_alternative_id: NCBITaxon:98358
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:16560691
数据库_交叉_引用: PMID:19965992
数据库_交叉_引用: PMID:23485124
数据库_交叉_引用: PMID:932684
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Aeromonas dourgesi
has_related_synonym: Aeromonas hydrophilia
has_related_synonym: Aeromonas liquefaciens

Aeromonas salmonicida
type: Class
subclass of: Aeromonas
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_alternative_id: NCBITaxon:697046
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:19965992
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Bacillus salmonicida
has_related_synonym: Bacterium salmonicida
has_related_synonym: Proteus salmonicida

Listeria monocytogenes 08-5578
type: Class
subclass of: Listeria monocytogenes
subclass of: Restriction
  on property: has_part
  some values from: genome of Listeria monocytogenes 08-5578
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Listeria monocytogenes str. 08-5578
has_exact_synonym: Listeria monocytogenes strain 08-5578
有_obo_命名空间: ncbi_taxonomy

Neisseria meningitidis alpha14
type: Class
subclass of: Neisseria meningitidis
subclass of: Restriction
  on property: has_part
  some values from: genome of Neisseria meningitidis alpha14
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Neisseria meningitidis str. alpha14
has_exact_synonym: Neisseria meningitidis strain alpha14
有_obo_命名空间: ncbi_taxonomy

Vibrio cholerae
type: Class
subclass of: Gammaproteobacteria
subclass of: Restriction
  on property: has_part
  some values from: genome of Vibrio cholerae
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:9272984
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Bacillo virgola del Koch
has_related_synonym: Bacillus cholerae
has_related_synonym: Bacillus cholerae-asiaticae
has_related_synonym: Kommabacillus
has_related_synonym: Liquidivibrio cholerae
has_related_synonym: Microspira comma
has_related_synonym: Pacinia cholerae-asiaticae
has_related_synonym: Spirillum cholerae
has_related_synonym: Spirillum cholerae-asiaticae
has_related_synonym: Vibrio choleae
has_related_synonym: Vibrio cholera
has_related_synonym: Vibrio cholerae-asiaticae
has_related_synonym: Vibrio comma

Legionella pneumophila serogroup 1
type: Class
subclass of: Legionella pneumophila
subclass of: Restriction
  on property: has_part
  some values from: genome of Legionella pneumophila serogroup 1
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
有_obo_命名空间: ncbi_taxonomy

Staphylococcus aureus subsp. aureus ED98
type: Class
subclass of: Staphylococcus aureus subsp. aureus
subclass of: Restriction
  on property: has_part
  some values from: genome of Staphylococcus aureus subsp. aureus ED98
imported from: ncbitaxon.owl
has_alternative_id: NCBITaxon:665030
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Staphylococcus aureus subsp. aureus str. ED98
has_exact_synonym: Staphylococcus aureus subsp. aureus strain ED98
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Staphylococcus aureus ED98

Murine cytomegalovirus (strain K181)
type: Class
subclass of: Herpesviridae
subclass of: Restriction
  on property: has_part
  some values from: genome of Murine cytomegalovirus (strain K181)
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy

Coronavirinae
type: Class
subclass of: Nidovirales
subclass of: Restriction
  on property: has_part
  some values from: genome of Coronavirinae
imported from: ncbitaxon.owl
has_rank: NCBITaxon subfamily
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy

Alphacoronavirus 1
type: Class
subclass of: Coronavirinae
subclass of: Restriction
  on property: has_part
  some values from: genome of Alphacoronavirus 1
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Alphacoronavirus-1

Severe acute respiratory syndrome-related coronavirus
type: Class
subclass of: Coronavirinae
subclass of: Restriction
  on property: has_part
  some values from: genome of Severe acute respiratory syndrome-related coronavirus
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_broad_synonym: SARSr-CoV
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: SARS-like coronavirus
has_related_synonym: SARS-related coronavirus

Human metapneumovirus CAN97-83
type: Class
subclass of: Pneumoviridae
subclass of: Restriction
  on property: has_part
  some values from: genome of Human metapneumovirus CAN97-83
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy

Mileewa branchiuma
type: Class
subclass of: Bilateria
subclass of: Restriction
  on property: has_part
  some values from: genome of Mileewa branchiuma
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy

Staphylococcus aureus 04-02981
type: Class
subclass of: Staphylococcus aureus
subclass of: Restriction
  on property: has_part
  some values from: genome of Staphylococcus aureus 04-02981
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
有_obo_命名空间: ncbi_taxonomy

Bombyx mori
type: Class
subclass of: Obtectomera
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:1
has_exact_synonym: domestic silkworm
has_exact_synonym: silk moth
has_exact_synonym: silkworm
有_obo_命名空间: ncbi_taxonomy

Mycoplasma gallisepticum str. R(low)
type: Class
subclass of: Bacteria
subclass of: Restriction
  on property: has_part
  some values from: genome of Mycoplasma gallisepticum str. R(low)
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:4
数据库_交叉_引用: PMID:12949158
has_exact_synonym: Mycoplasma gallisepticum R(low)
has_exact_synonym: Mycoplasma gallisepticum strain R(low)
有_obo_命名空间: ncbi_taxonomy

Pasteurellaceae
type: Class
subclass of: Gammaproteobacteria
subclass of: Restriction
  on property: has_part
  some values from: genome of Pasteurellaceae
imported from: ncbitaxon.owl
has_rank: NCBITaxon family
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:10843050
数据库_交叉_引用: PMID:15280320
数据库_交叉_引用: PMID:15388716
数据库_交叉_引用: PMID:17220461
数据库_交叉_引用: PMID:2223605
数据库_交叉_引用: PMID:29923825
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Pasteurellaceae Pohl 1981

Galleria mellonella
type: Class
subclass of: Obtectomera
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_alternative_id: NCBITaxon:185836
数据库_交叉_引用: GC_ID:1
has_exact_synonym: greater wax moth
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Galleria mellonela
has_related_synonym: Galleria melonella

Haemophilus influenzae Rd KW20
type: Class
subclass of: Haemophilus influenzae
subclass of: Restriction
  on property: has_part
  some values from: genome of Haemophilus influenzae Rd KW20
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Haemophilus influenzae KW20
has_exact_synonym: Haemophilus influenzae Rd
有_obo_命名空间: ncbi_taxonomy
id: NCBITaxon:71421

Actinobacillus pleuropneumoniae
type: Class
subclass of: Pasteurellaceae
subclass of: Restriction
  on property: has_part
  some values from: genome of Actinobacillus pleuropneumoniae
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:1847295
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Actinobacillus pleuropneumonia
has_related_synonym: Haemophilus pleuropneumoniae

saccharomyceta
type: Class
subclass of: Dikarya
subclass of: Ascomycota
subclass of: Restriction
  on property: has_part
  some values from: genome of saccharomyceta
editor preferred label: saccharomyceta
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy

Drosophila melanogaster
type: Class
subclass of: Pancrustacea
subclass of: Metazoa
subclass of: Holometabola
editor preferred label: Drosophila melanogaster
alternative term: fruit fly
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:1
has_exact_synonym: fruit fly
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Drosophila melangaster
has_related_synonym: Sophophora melanogaster
id: NCBITaxon:7227

Axiom
annotated source: Drosophila melanogaster
annotated property: has_exact_synonym
annotated target: fruit fly
has_synonym_type: Label appended to organism-specific terms in place of scientific name

Haemophilus influenzae
type: Class
subclass of: Pasteurellaceae
subclass of: Restriction
  on property: has_part
  some values from: genome of Haemophilus influenzae
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:11
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Bacterium influenzae
has_related_synonym: Coccobacillus pfeifferi
has_related_synonym: Haemophilus meningitidis
has_related_synonym: Influenza-bacillus
has_related_synonym: Mycobacterium influenzae

Plasmodium yoelii yoelii
type: Class
subclass of: Plasmodium yoelii
subclass of: Restriction
  on property: has_part
  some values from: genome of Plasmodium yoelii yoelii
imported from: ncbitaxon.owl
has_rank: NCBITaxon subspecies
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
id: NCBITaxon:73239

Pasteurella multocida
type: Class
subclass of: Pasteurellaceae
subclass of: Restriction
  on property: has_part
  some values from: genome of Pasteurella multocida
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:15184562
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Bacterium multocidum
has_related_synonym: Micrococcus gallicidus
has_related_synonym: Pasteurella cholerae-gallinarum
has_related_synonym: Pasteurella gallicida
has_related_synonym: Pateurella multocida

Mannheimia haemolytica
type: Class
subclass of: Pasteurellaceae
subclass of: Restriction
  on property: has_part
  some values from: genome of Mannheimia haemolytica
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_alternative_id: NCBITaxon:746
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:10028248
数据库_交叉_引用: PMID:8782683
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Pasteurella haemolytica

Nidovirales
type: Class
subclass of: ssRNA positive-strand viruses, no DNA stage
subclass of: Restriction
  on property: has_part
  some values from: genome of Nidovirales
imported from: ncbitaxon.owl
has_rank: NCBITaxon order
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy

Bartonella
type: Class
subclass of: Rhizobiales
subclass of: Restriction
  on property: has_part
  some values from: genome of Bartonella
imported from: ncbitaxon.owl
has_rank: NCBITaxon genus
has_alternative_id: NCBITaxon:802
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:10425758
数据库_交叉_引用: PMID:11837299
数据库_交叉_引用: PMID:12508871
数据库_交叉_引用: PMID:7857789
数据库_交叉_引用: PMID:8240958
数据库_交叉_引用: PMID:8863415
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: "Bartonia" Strong et al. 1913
has_related_synonym: "Grahamella" Brumpt 1911
has_related_synonym: "Grahmia" Tartakowsky 1910
has_related_synonym: "Rocha-Limae" (sic) Machiavello 1947
has_related_synonym: Bartonella Strong et al. 1915 (Approved Lists 1980) emend. Birtles et al. 1995
has_related_synonym: Bartonella Strong et al. 1915 (Approved Lists 1980) emend. Brenner et al. 1993
has_related_synonym: Grahamella
has_related_synonym: Grahamella (ex Brumpt 1911) Ristic and Kreier 1984
has_related_synonym: Grahmia
has_related_synonym: Rocha-Limae
has_related_synonym: Rochalimaea
has_related_synonym: Rochalimaea (Macchiavello 1947) Krieg 1961

Vertebrata <Metazoa>
type: Class
subclass of: Bilateria
editor preferred label: Vertebrata <Metazoa>
alternative term: Vertebrata
alternative term: vertebrates
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:1
has_exact_synonym: Vertebrata
has_exact_synonym: vertebrates
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: vertebrates

Coxiella burnetii
type: Class
subclass of: Legionellales
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:9226923
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Coxiella burnetii8
has_related_synonym: Rickettsia burneti
has_related_synonym: Rickettsia diaporica

Rickettsia
type: Class
subclass of: Alphaproteobacteria
imported from: ncbitaxon.owl
has_rank: NCBITaxon genus
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:10939649
数据库_交叉_引用: PMID:11491333
数据库_交叉_引用: PMID:14662925
数据库_交叉_引用: PMID:9103608
有_obo_命名空间: ncbi_taxonomy

Danio rerio
type: Class
subclass of: Clupeocephala
subclass of: Metazoa
editor preferred label: Danio rerio
alternative term: leopard danio
alternative term: zebra danio
alternative term: zebra fish
alternative term: zebrafish
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_alternative_id: NCBITaxon:27702
has_alternative_id: NCBITaxon:37966
数据库_交叉_引用: GC_ID:1
has_exact_synonym: leopard danio
has_exact_synonym: zebra danio
has_exact_synonym: zebra fish
has_exact_synonym: zebrafish
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Brachidanio rerio
has_related_synonym: Brachydanio rerio
has_related_synonym: Brachydanio rerio frankei
has_related_synonym: Cyprinus rerio
has_related_synonym: Danio frankei
has_related_synonym: Danio rerio frankei
id: NCBITaxon:7955

Axiom
annotated source: Danio rerio
annotated property: has_exact_synonym
annotated target: zebrafish
has_synonym_type: Label appended to organism-specific terms in place of scientific name

Lythrurus
type: Class
subclass of: Bilateria
subclass of: Restriction
  on property: has_part
  some values from: genome of Lythrurus
imported from: ncbitaxon.owl
has_rank: NCBITaxon genus
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy

Bovine herpesvirus type 1.1
type: Class
subclass of: Bovine alphaherpesvirus 1
subclass of: Restriction
  on property: has_part
  some values from: genome of Bovine herpesvirus type 1.1
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy

Salmonidae
type: Class
subclass of: Clupeocephala
imported from: ncbitaxon.owl
has_rank: NCBITaxon family
数据库_交叉_引用: GC_ID:1
数据库_交叉_引用: PMID:15062801
has_exact_synonym: salmonids
有_obo_命名空间: ncbi_taxonomy

Oncorhynchus mykiss
type: Class
subclass of: Salmoninae
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_alternative_id: NCBITaxon:1311475
数据库_交叉_引用: GC_ID:1
has_exact_synonym: rainbow trout
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Onchorhynchus mykiss
has_related_synonym: Oncorhynchus nerka mykiss
has_related_synonym: Parasalmo mykiss
has_related_synonym: Salmo mykiss

Melanogaster
type: Class
subclass of: Agaricomycotina
imported from: ncbitaxon.owl
has_rank: NCBITaxon genus
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy

Burkholderiales
type: Class
subclass of: Betaproteobacteria
subclass of: Restriction
  on property: has_part
  some values from: genome of Burkholderiales
imported from: ncbitaxon.owl
has_rank: NCBITaxon order
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:16403855
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: 'Burkholderiales'
has_related_synonym: Burkholderia/Oxalobacter/Ralstonia group

Chlamydia
type: Class
subclass of: Bacteria
subclass of: Restriction
  on property: has_part
  some values from: genome of Chlamydia
imported from: ncbitaxon.owl
has_rank: NCBITaxon genus
has_alternative_id: NCBITaxon:83553
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:10319462
数据库_交叉_引用: PMID:11211265
数据库_交叉_引用: PMID:21048221
数据库_交叉_引用: PMID:21048222
数据库_交叉_引用: PMID:23620152
数据库_交叉_引用: PMID:25618261
数据库_交叉_引用: PMID:9103632
数据库_交叉_引用: PMID:9103637
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Bedsonia
has_related_synonym: Chlamydophila
has_related_synonym: Miyagawanella
has_related_synonym: Rakeia
has_related_synonym: Rickettsiaformis

Chlamydia trachomatis
type: Class
subclass of: Chlamydia
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:10192388
数据库_交叉_引用: PMID:10319462
数据库_交叉_引用: PMID:8102247
数据库_交叉_引用: PMID:8347519
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Chlamydozoon trachomatis
has_related_synonym: Rickettsia trachomae
has_related_synonym: Rickettsia trachomatis

Mycobacterium tuberculosis CDC1551
type: Class
subclass of: Mycobacterium tuberculosis
subclass of: Restriction
  on property: has_part
  some values from: genome of Mycobacterium tuberculosis CDC1551
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:12218036
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Mycobacterium tuberculosis CSU#93

Mycobacterium tuberculosis H37Rv
type: Class
subclass of: Mycobacterium tuberculosis
subclass of: Restriction
  on property: has_part
  some values from: genome of Mycobacterium tuberculosis H37Rv
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:12218036
数据库_交叉_引用: PMID:12368430
数据库_交叉_引用: PMID:9634230
has_exact_synonym: Mycobacterium tuberculosis str. H37Rv
has_exact_synonym: Mycobacterium tuberculosis strain H37Rv
有_obo_命名空间: ncbi_taxonomy
id: NCBITaxon:83332

Escherichia coli K-12
type: Class
subclass of: Escherichia coli
subclass of: Restriction
  on property: has_part
  some values from: genome of Escherichia coli K-12
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Escherichia coli K12
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Ec-
id: NCBITaxon:83333

Axiom
annotated source: Escherichia coli K-12
annotated property: has_related_synonym
annotated target: Ec-
数据库_交叉_引用: PRO:DAN
has_synonym_type: Unique short label for PRO terms for display purposes; based on orthology

Escherichia coli O157:H7
type: Class
subclass of: Escherichia coli
subclass of: Restriction
  on property: has_part
  some values from: genome of Escherichia coli O157:H7
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Escherichia coli 0157:H7

Chlamydia pneumoniae
type: Class
subclass of: Chlamydia
subclass of: Restriction
  on property: has_part
  some values from: genome of Chlamydia pneumoniae
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_alternative_id: NCBITaxon:811
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:10319462
数据库_交叉_引用: PMID:8102247
数据库_交叉_引用: PMID:8347519
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Chlamydophila pneumoniae

Corynebacteriales
type: Class
subclass of: Terrabacteria group
subclass of: Restriction
  on property: has_part
  some values from: genome of Corynebacterineae
imported from: ncbitaxon.owl
has_rank: NCBITaxon order
has_rank: NCBITaxon suborder
has_alternative_id: NCBITaxon:1761
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:11837321
数据库_交叉_引用: PMID:1736962
数据库_交叉_引用: PMID:19244447
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Corynebacterineae
label: Corynebacterineae

Salvelinus alpinus alpinus
type: Class
subclass of: Salmoninae
imported from: ncbitaxon.owl
has_rank: NCBITaxon subspecies
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: charr

Porcine circovirus 2
type: Class
subclass of: Circoviridae
subclass of: Restriction
  on property: has_part
  some values from: genome of Porcine circovirus 2
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Porcine circovirus Type II
has_related_synonym: Porcine circovirus type 2

Helicobacter pylori 26695
type: Class
subclass of: Helicobacter pylori
subclass of: Restriction
  on property: has_part
  some values from: genome of Helicobacter pylori 26695
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:9252185
has_exact_synonym: Helicobacter pylori (strain 26695)
has_exact_synonym: Helicobacter pylori str. 26695
has_exact_synonym: Helicobacter pylori strain 26695
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Helicobacter pylori ATCC 700392
has_related_synonym: Helicobacter pylori KE26695
id: NCBITaxon:85962

Helicobacter pylori J99
type: Class
subclass of: Helicobacter pylori
subclass of: Restriction
  on property: has_part
  some values from: genome of Helicobacter pylori J99
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:9923682
has_exact_synonym: Helicobacter pylori str. J99
has_exact_synonym: Helicobacter pylori strain J99
有_obo_命名空间: ncbi_taxonomy
id: NCBITaxon:85963

Legionella pneumophila 130b
type: Class
subclass of: Legionella pneumophila serogroup 1
subclass of: Restriction
  on property: has_part
  some values from: genome of Legionella pneumophila 130b
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Legionella pneumophila str. 130b
has_exact_synonym: Legionella pneumophila strain 130b
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Legionella pneumophila ATCC BAA-74
has_related_synonym: Legionella pneumophila serogroup 1 strain 130b

Phasianidae
type: Class
subclass of: Amniota
imported from: ncbitaxon.owl
has_rank: NCBITaxon family
has_alternative_id: NCBITaxon:9099
数据库_交叉_引用: GC_ID:1
has_exact_synonym: turkeys
有_obo_命名空间: ncbi_taxonomy

Gallus gallus
type: Class
subclass of: Metazoa
subclass of: Phasianidae
editor preferred label: Gallus gallus
alternative term: bantam
alternative term: chicken
alternative term: chickens
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:1
has_exact_synonym: bantam
has_exact_synonym: chicken
has_exact_synonym: chickens
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Gallus domesticus
has_related_synonym: Gallus gallus domesticus
has_related_synonym: chick-
has_related_synonym: chicken
id: NCBITaxon:9031

Axiom
annotated source: Gallus gallus
annotated property: has_related_synonym
annotated target: chick-
数据库_交叉_引用: PRO:DAN
has_synonym_type: Unique short label for PRO terms for display purposes; based on orthology

Axiom
annotated source: Gallus gallus
annotated property: has_related_synonym
annotated target: chicken
has_synonym_type: Label appended to organism-specific terms in place of scientific name

Salmonella enterica subsp. enterica serovar Typhi
type: Class
subclass of: Salmonella enterica subsp. enterica
subclass of: Restriction
  on property: has_part
  some values from: genome of Salmonella enterica subsp. enterica serovar Typhi
imported from: ncbitaxon.owl
has_alternative_id: NCBITaxon:41530
has_alternative_id: NCBITaxon:601
has_alternative_id: NCBITaxon:72667
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:10319519
数据库_交叉_引用: PMID:10758910
数据库_交叉_引用: PMID:15653930
数据库_交叉_引用: PMID:16558776
数据库_交叉_引用: PMID:9336938
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Bacillus typhi
has_related_synonym: Bacterium (subgen. Eberthella) typhi
has_related_synonym: Salmonella choleraesuis serovar Typhi
has_related_synonym: Salmonella choleraesuis typhi
has_related_synonym: Salmonella enterica ser. typhi
has_related_synonym: Salmonella enterica serotype Typhi
has_related_synonym: Salmonella enterica serovar Typhi
has_related_synonym: Salmonella typhi
id: NCBITaxon:90370

Salmonella enterica subsp. enterica serovar Typhimurium
type: Class
subclass of: Salmonella enterica subsp. enterica
subclass of: Restriction
  on property: has_part
  some values from: genome of Salmonella enterica subsp. enterica serovar Typhimurium
imported from: ncbitaxon.owl
has_alternative_id: NCBITaxon:41532
has_alternative_id: NCBITaxon:59210
has_alternative_id: NCBITaxon:602
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:10758910
数据库_交叉_引用: PMID:15653930
数据库_交叉_引用: PMID:9336938
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Bacillus typhimurium
has_related_synonym: Salmonella choleraesuis serotype typhimurium
has_related_synonym: Salmonella enterica 1,4,[5],12,:i:1,2
has_related_synonym: Salmonella enterica ser. typhimurium
has_related_synonym: Salmonella enterica serotype Typhimurium
has_related_synonym: Salmonella enterica serovar Typhimurium
has_related_synonym: Salmonella enterica subsp. enterica serovar 1,4,[5],12,:i:1,2
has_related_synonym: Salmonella typhi-murium
has_related_synonym: Salmonella typhimurium
has_related_synonym: Samonella typhimurium
has_related_synonym: Styphi-
id: NCBITaxon:90371

Axiom
annotated source: Salmonella enterica subsp. enterica serovar Typhimurium
annotated property: has_related_synonym
annotated target: Styphi-
数据库_交叉_引用: PRO:DAN
has_synonym_type: Unique short label for PRO terms for display purposes; based on orthology

Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74
type: Class
subclass of: Salmonella enterica subsp. enterica serovar Typhimurium
subclass of: Restriction
  on property: has_part
  some values from: genome of Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:21478351
has_exact_synonym: Salmonella enterica subsp. enterica serovar Typhimurium strain ST4/74
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74
has_related_synonym: Salmonella enterica subsp. enterica serovar Typhimurium str. 474

Bacilli
type: Class
subclass of: Firmicutes
subclass of: Restriction
  on property: has_part
  some values from: genome of Bacilli
imported from: ncbitaxon.owl
has_rank: NCBITaxon class
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:20212322
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Bacillus/Lactobacillus/Streptococcus group
has_related_synonym: Firmibacteria

Enterobacterales
type: Class
subclass of: Gammaproteobacteria
imported from: ncbitaxon.owl
has_rank: NCBITaxon order
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:27620848
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Enterobacteriaceae and related endosymbionts
has_related_synonym: Enterobacteriaceae group
has_related_synonym: Enterobacteriales
has_related_synonym: enterobacteria
has_related_synonym: gamma-3 proteobacteria

Cetartiodactyla
type: Class
subclass of: Laurasiatheria
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:1
has_exact_synonym: whales, hippos, ruminants, pigs, camels etc.
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: even-toed ungulates

Staphylococcus aureus subsp. aureus NCTC 8325
type: Class
subclass of: Staphylococcus aureus subsp. aureus
subclass of: Restriction
  on property: has_part
  some values from: genome of Staphylococcus aureus subsp. aureus NCTC 8325
imported from: ncbitaxon.owl
数据库_交叉_引用: GC_ID:11
has_exact_synonym: Staphylococcus aureus subsp. aureus str. NCTC 8325
has_exact_synonym: Staphylococcus aureus subsp. aureus strain NCTC 8325
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Staphylococcus aureus NCTC 8325
id: NCBITaxon:93061

Influenza A virus (A/Goose/Guangdong/1/96(H5N1))
type: Class
subclass of: H5N1 subtype
subclass of: Restriction
  on property: has_part
  some values from: genome of Influenza A virus (A/Goose/Guangdong/1/96(H5N1))
imported from: ncbitaxon.owl
has_alternative_id: NCBITaxon:95751
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: influenza A virus (A/goose/Guangdong/1/96/(H5N1))
id: NCBITaxon:93838
label: Influenza A virus (A/goose/Guangdong/1/1996(H5N1))

Platyrrhini
type: Class
subclass of: Simiiformes
imported from: ncbitaxon.owl
has_rank: NCBITaxon parvorder
数据库_交叉_引用: GC_ID:1
has_exact_synonym: New World monkeys
has_exact_synonym: monkey
has_exact_synonym: monkeys
有_obo_命名空间: ncbi_taxonomy

Catarrhini
type: Class
subclass of: Simiiformes
imported from: ncbitaxon.owl
has_rank: NCBITaxon parvorder
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy

Cercopithecidae
type: Class
subclass of: Catarrhini
imported from: ncbitaxon.owl
has_rank: NCBITaxon family
数据库_交叉_引用: GC_ID:1
has_exact_synonym: Old World monkeys
has_exact_synonym: monkey
has_exact_synonym: monkeys
有_obo_命名空间: ncbi_taxonomy

Chlorocebus aethiops
type: Class
subclass of: Mammalia
has_exact_synonym: green monkey
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: GrMonkey-
id: NCBITaxon:9534
label: 绿猴属 @zh

Axiom
annotated source: Chlorocebus aethiops
annotated property: has_exact_synonym
annotated target: green monkey
has_synonym_type: Label appended to organism-specific terms in place of scientific name

Axiom
annotated source: Chlorocebus aethiops
annotated property: has_related_synonym
annotated target: GrMonkey-
数据库_交叉_引用: PRO:DAN
has_synonym_type: Unique short label for PRO terms for display purposes; based on orthology

Homo sapiens
type: Class
subclass of: Catarrhini
editor preferred label: Homo sapiens
alternative term: human
alternative term: human being
alternative term: man
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:1
has_exact_synonym: human
has_exact_synonym: man
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Home sapiens
has_related_synonym: Homo sampiens
has_related_synonym: Homo sapeins
has_related_synonym: Homo sapian
has_related_synonym: Homo sapians
has_related_synonym: Homo sapien
has_related_synonym: Homo sapience
has_related_synonym: Homo sapiense
has_related_synonym: Homo sapients
has_related_synonym: Homo sapines
has_related_synonym: Homo spaiens
has_related_synonym: Homo spiens
has_related_synonym: Humo sapiens
has_related_synonym: h
has_related_synonym: human
id: NCBITaxon:9606
label: 人类 @zh

Axiom
annotated source: Homo sapiens
annotated property: has_related_synonym
annotated target: h
数据库_交叉_引用: PRO:DAN
has_synonym_type: Unique short label for PRO terms for display purposes; based on orthology

Axiom
annotated source: Homo sapiens
annotated property: has_related_synonym
annotated target: human
数据库_交叉_引用: PRO:DAN
has_synonym_type: Label appended to organism-specific terms in place of scientific name

Mustela putorius furo
type: Class
subclass of: Laurasiatheria
imported from: ncbitaxon.owl
has_rank: NCBITaxon subspecies
has_alternative_id: NCBITaxon:77150
数据库_交叉_引用: GC_ID:1
has_exact_synonym: black ferret
has_exact_synonym: domestic ferret
has_exact_synonym: ferret
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Mustela furo
has_related_synonym: Mustela putoris furo

Sus scrofa
type: Class
subclass of: Mammalia
subclass of: Cetartiodactyla
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
数据库_交叉_引用: GC_ID:1
has_exact_synonym: pig
has_exact_synonym: pigs
has_exact_synonym: swine
has_exact_synonym: wild boar
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Sus scrofus
has_related_synonym: pig
has_related_synonym: pig-
id: NCBITaxon:9823

Axiom
annotated source: Sus scrofa
annotated property: has_related_synonym
annotated target: pig
has_synonym_type: Label appended to organism-specific terms in place of scientific name

Axiom
annotated source: Sus scrofa
annotated property: has_related_synonym
annotated target: pig-
数据库_交叉_引用: PRO:DAN
has_synonym_type: Unique short label for PRO terms for display purposes; based on orthology

Bovidae
type: Class
subclass of: Cetartiodactyla
imported from: ncbitaxon.owl
has_rank: NCBITaxon family
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy

Bos taurus
type: Class
subclass of: Mammalia
subclass of: Bovidae
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_alternative_id: NCBITaxon:272461
数据库_交叉_引用: GC_ID:1
has_exact_synonym: bovine
has_exact_synonym: cattle
has_exact_synonym: cow
has_exact_synonym: dairy cow
has_exact_synonym: domestic cattle
has_exact_synonym: domestic cow
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Bos Tauurus
has_related_synonym: Bos bovis
has_related_synonym: Bos primigenius taurus
has_related_synonym: cow
has_related_synonym: cow-
id: NCBITaxon:9913

Axiom
annotated source: Bos taurus
annotated property: has_related_synonym
annotated target: cow
has_synonym_type: Label appended to organism-specific terms in place of scientific name

Axiom
annotated source: Bos taurus
annotated property: has_related_synonym
annotated target: cow-
数据库_交叉_引用: PRO:DAN
has_synonym_type: Unique short label for PRO terms for display purposes; based on orthology

Capra hircus
type: Class
subclass of: Caprinae
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_alternative_id: NCBITaxon:57076
数据库_交叉_引用: GC_ID:1
has_exact_synonym: domestic goat
has_exact_synonym: goat
has_exact_synonym: goats
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Capra aegagrus hircus
has_related_synonym: Carpa hircus
has_related_synonym: South African angora goat

Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
type: Class
subclass of: Salmonella enterica subsp. enterica serovar Typhimurium
subclass of: Restriction
  on property: has_part
  some values from: genome of Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
imported from: ncbitaxon.owl
has_alternative_id: NCBITaxon:870965
数据库_交叉_引用: GC_ID:11
数据库_交叉_引用: PMID:11677609
has_exact_synonym: Salmonella enterica subsp. enterica serovar Typhimurium LT2
has_exact_synonym: Salmonella enterica subsp. enterica serovar Typhimurium strain LT2
has_exact_synonym: Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Salmonella typhimurium LT2
has_related_synonym: SaltyLT2-
id: NCBITaxon:99287

Axiom
annotated source: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
annotated property: has_related_synonym
annotated target: SaltyLT2-
数据库_交叉_引用: PRO:DAN
has_synonym_type: Unique short label for PRO terms for display purposes; based on orthology

Ovis aries
type: Class
subclass of: Mammalia
subclass of: Caprinae
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_alternative_id: NCBITaxon:9936
数据库_交叉_引用: GC_ID:1
has_exact_synonym: domestic sheep
has_exact_synonym: lambs
has_exact_synonym: sheep
has_exact_synonym: wild sheep
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Ovis ammon aries
has_related_synonym: Ovis orientalis aries
has_related_synonym: Ovis ovis
id: NCBITaxon:9940

Axiom
annotated source: Ovis aries
annotated property: has_exact_synonym
annotated target: sheep
has_synonym_type: Label appended to organism-specific terms in place of scientific name

Caprinae
type: Class
subclass of: Bovidae
imported from: ncbitaxon.owl
has_rank: NCBITaxon subfamily
数据库_交叉_引用: GC_ID:1
有_obo_命名空间: ncbi_taxonomy

Oryctolagus cuniculus
type: Class
subclass of: Glires
imported from: ncbitaxon.owl
has_rank: NCBITaxon species
has_alternative_id: NCBITaxon:34833
has_alternative_id: NCBITaxon:9985
数据库_交叉_引用: GC_ID:1
has_exact_synonym: European rabbit
has_exact_synonym: Japanese white rabbit
has_exact_synonym: domestic rabbit
has_exact_synonym: rabbit
has_exact_synonym: rabbits
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: Lepus cuniculus
has_related_synonym: rabbit-
id: NCBITaxon:9986

Axiom
annotated source: Oryctolagus cuniculus
annotated property: has_exact_synonym
annotated target: rabbit
has_synonym_type: Label appended to organism-specific terms in place of scientific name

Axiom
annotated source: Oryctolagus cuniculus
annotated property: has_related_synonym
annotated target: rabbit-
数据库_交叉_引用: PRO:DAN
has_synonym_type: Unique short label for PRO terms for display purposes; based on orthology

Rodentia
type: Class
subclass of: Glires
editor preferred label: Rodentia
alternative term: rodent
imported from: ncbitaxon.owl
has_rank: NCBITaxon order
数据库_交叉_引用: GC_ID:1
has_exact_synonym: rodent
有_obo_命名空间: ncbi_taxonomy
has_related_synonym: rodents
id: NCBITaxon:9989

Axiom
annotated source: Rodentia
annotated property: has_exact_synonym
annotated target: rodent
has_synonym_type: Label appended to organism-specific terms in place of scientific name

planned process
type: Class
equivalent class: Restriction
  on property: realizes
  some values from: Restriction
    on property: concretizes
    some values from: plan specification
subclass of: process
subclass of: Restriction
  on property: realizes
  some values from: Restriction
    on property: concretizes
    some values from: plan specification
editor preferred label: planned process
example of usage: Injecting mice with a vaccine in order to test its efficacy
has curation status: IAO_0000122
definition: A processual entity that realizes a plan which is the concretization of a plan specification.
editor note: 'Plan' includes a future direction sense. That can be problematic if plans are changed during their execution. There are however implicit contingencies for protocols that an agent has in his mind that can be considered part of the plan, even if the agent didn't have them in mind before. Therefore, a planned process can diverge from what the agent would have said the plan was before executing it, by adjusting to problems encountered during execution (e.g. choosing another reagent with equivalent properties, if the originally planned one has run out.)
editor note: We are only considering successfully completed planned processes. A plan may be modified, and details added during execution. For a given planned process, the associated realized plan specification is the one encompassing all changes made during execution. This means that all processes in which an agent acts towards achieving some objectives is a planned process.
definition editor: Bjoern Peters
definition source: branch derived
curator note: 6/11/9: Edited at workshop. Used to include: is initiated by an agent
curator note: This class merges the previously separated objective driven process and planned process, as they the separation proved hard to maintain. (1/22/09, branch call)
imported from: obi.owl
imported from: vo.owl

regulator role
type: Class
subclass of: regulatory role
editor preferred label: regulator role
example of usage: Fact sheet - Regulating the companies The role of the regulator. Ofwat is the economic regulator of the water and sewerage industry in England and Wales. http://www.ofwat.gov.uk/aptrix/ofwat/publish.nsf/Content/roleofregulator_factsheet170805
has curation status: IAO_0000120
definition: a regulatory role involved with making and/or enforcing relevant legislation and governmental orders
definition editor: Person:Jennifer Fostel
alternative term: regulator
definition source: OBI

regulatory role
type: Class
subclass of: role
editor preferred label: regulatory role
example of usage: Regulatory agency, Ethics committee, Approval letter; example: Browse these EPA Regulatory Role subtopics http://www.epa.gov/ebtpages/enviregulatoryrole.html Feb 29, 2008
has curation status: IAO_0000120
definition: a role which inheres in material entities and is realized in the processes of making, enforcing or being defined by legislation or orders issued by a governmental body.
definition editor: GROUP: Role branch
definition source: OBI, CDISC
curator note: govt agents responsible for creating regulations; proxies for enforcing regulations. CDISC definition: regulatory authorities. Bodies having the power to regulate. NOTE: In the ICH GCP guideline the term includes the authorities that review submitted clinical data and those that conduct inspections. These bodies are sometimes referred to as competent

material supplier role
type: Class
subclass of: service provider role
editor preferred label: material supplier role
example of usage: Jackson Labs is an organization which provide mice as experimental material
has curation status: IAO_0000120
definition: a role realized through the process of supplying materials such as animal subjects, reagents or other materials used in an investigation.
editor note: Supplier role is a special kind of service, e.g. biobank
definition editor: PERSON:Jennifer Fostel
alternative term: material provider role
alternative term: supplier

classified data set
type: Class
equivalent class: Restriction
  on property: is_specified_output_of
  some values from: class prediction data transformation
subclass of: data set
subclass of: Restriction
  on property: is_specified_output_of
  some values from: class prediction data transformation
editor preferred label: classified data set
has curation status: IAO_0000125
definition: A data set that is produced as the output of a class prediction data transformation and consists of a data set with assigned class labels.
definition editor: PERSON: James Malone
definition editor: PERSON: Monnie McGee
alternative term: data set with assigned class labels

processed material
type: Class
equivalent class: Class
  intersection of: material entity
  intersection of: Restriction
    on property: is_specified_output_of
    some values from: material processing
subclass of: material entity
subclass of: Restriction
  on property: is_specified_output_of
  some values from: material processing
editor preferred label: processed material
example of usage: Examples include gel matrices, filter paper, parafilm and buffer solutions, mass spectrometer, tissue samples
has curation status: IAO_0000122
definition: Is a material entity that is created or changed during material processing.
definition editor: PERSON: Alan Ruttenberg
imported from: obi.owl
imported from: vo.owl

culture medium
type: Class
subclass of: processed material
editor preferred label: culture medium
example of usage: A growth medium or culture medium is a substance in which microorganisms or cells can grow. Wikipedia, growth medium, Feb 29, 2008
has curation status: IAO_0000122
definition: a processed material that provides the needed nourishment for microorganisms or cells grown in vitro.
editor note: changed from a role to a processed material based on on Aug 22, 2011 dev call. Details see the tracker item: http://sourceforge.net/tracker/?func=detail&aid=3325270&group_id=177891&atid=886178 Modification made by JZ.
definition editor: Person: Jennifer Fostel, Jie Zheng
definition source: OBI

material processing
type: Class
equivalent class: Restriction
  on property: achieves_planned_objective
  some values from: material transformation objective
subclass of: planned process
subclass of: Restriction
  on property: has_specified_output
  some values from: processed material
subclass of: Restriction
  on property: achieves_planned_objective
  some values from: material transformation objective
subclass of: Restriction
  on property: has_specified_input
  all values from: material entity
editor preferred label: material processing
example of usage: A cell lysis, production of a cloning vector, creating a buffer.
has curation status: IAO_0000122
definition: A planned process which results in physical changes in a specified input material
definition editor: PERSON: Bjoern Peters
definition editor: PERSON: Frank Gibson
definition editor: PERSON: Jennifer Fostel
definition editor: PERSON: Melanie Courtot
definition editor: PERSON: Philippe Rocca Serra
alternative term: material transformation
definition source: OBI branch derived

specimen role
type: Class
subclass of: role
subclass of: Restriction
  on property: inheres in
  some values from: Class
    intersection of: material entity
    intersection of: Restriction
      on property: is_specified_output_of
      some values from: specimen collection process
editor preferred label: specimen role
example of usage: liver section; a portion of a culture of cells; a nemotode or other animal once no longer a subject (generally killed); portion of blood from a patient.
has curation status: IAO_0000122
definition: a role borne by a material entity that is gained during a specimen collection process and that can be realized by use of the specimen in an investigation
editor note: 22Jun09. The definition includes whole organisms, and can include a human. The link between specimen role and study subject role has been removed. A specimen taken as part of a case study is not considered to be a population representative, while a specimen taken as representing a population, e.g. person taken from a cohort, blood specimen taken from an animal) would be considered a population representative and would also bear material sample role.
editor note: Note: definition is in specimen creation objective which is defined as an objective to obtain and store a material entity for potential use as an input during an investigation.
editor note: blood taken from animal: animal continues in study, whereas blood has role specimen. something taken from study subject, leaves the study and becomes the specimen.
editor note: parasite example - when parasite in people we study people, people are subjects and parasites are specimen - when parasite extracted, they become subject in the following study specimen can later be subject.
definition editor: GROUP: Role Branch
definition source: OBI

antigen role
type: Class
subclass of: role
subclass of: Restriction
  on property: realized in
  all values from: immune response
editor preferred label: antigen role
has curation status: IAO_0000123
definition: Antigen is a role played by material which when introduced into an immune-competent organism causes an immune response
definition: a role that inheres in a vaccine component and plays an antigen role, i.e., it is introducd into an immune-competent organism to cause an immune response
editor note: An antigen is a substance that prompts the generation of antibodies and can cause an immune response. Wikipedia http://en.wikipedia.org/wiki/Antigen. In the strict sense, immunogens are those substances that elicit a response from the immune system, whereas antigens are defined as substances that bind to specific antibodies. Not all antigens produce an immunogenic response, but all immunogens are antigens
definition editor: Role Branch
definition source: OBI
curator note: 9Mar09 waiting for discussion with immunology terms
imported from: obi.owl
imported from: vo.owl

organization
type: Class
subclass of: material entity
editor preferred label: organization
example of usage: PMID: 16353909.AAPS J. 2005 Sep 22;7(2):E274-80. Review. The joint food and agriculture organization of the United Nations/World Health Organization Expert Committee on Food Additives and its role in the evaluation of the safety of veterinary drug residues in foods.
has curation status: IAO_0000122
definition: An entity that can bear roles, has members, and has a set of organization rules. Members of organizations are either organizations themselves or individual people. Members can bear specific organization member roles that are determined in the organization rules. The organization rules also determine how decisions are made on behalf of the organization by the organization members.
editor note: BP: The definition summarizes long email discussions on the OBI developer, roles, biomaterial and denrie branches. It leaves open if an organization is a material entity or a dependent continuant, as no consensus was reached on that. The current placement as material is therefore temporary, in order to move forward with development. Here is the entire email summary, on which the definition is based: 1) there are organization_member_roles (president, treasurer, branch editor), with individual persons as bearers 2) there are organization_roles (employer, owner, vendor, patent holder) 3) an organization has a charter / rules / bylaws, which specify what roles there are, how they should be realized, and how to modify the charter/rules/bylaws themselves. It is debatable what the organization itself is (some kind of dependent continuant or an aggregate of people). This also determines who/what the bearer of organization_roles' are. My personal favorite is still to define organization as a kind of 'legal entity', but thinking it through leads to all kinds of questions that are clearly outside the scope of OBI. Interestingly enough, it does not seem to matter much where we place organization itself, as long as we can subclass it (University, Corporation, Government Agency, Hospital), instantiate it (Affymetrix, NCBI, NIH, ISO, W3C, University of Oklahoma), and have it play roles. This leads to my proposal: We define organization through the statements 1 - 3 above, but without an 'is a' statement for now. We can leave it in its current place in the is_a hierarchy (material entity) or move it up to 'continuant'. We leave further clarifications to BFO, and close this issue for now.
definition editor: PERSON: Alan Ruttenberg
definition editor: PERSON: Bjoern Peters
definition editor: PERSON: Philippe Rocca-Serra
definition editor: PERSON: Susanna Sansone
definition source: GROUP: OBI
label: 组织 @zh

regulatory agency
type: Class
equivalent class: Class
  intersection of: organization
  intersection of: Restriction
    on property: has_role
    some values from: regulator role
subclass of: organization
subclass of: Restriction
  on property: has_role
  some values from: regulator role
editor preferred label: regulatory agency
example of usage: The US Environmental Protection Agency
has curation status: IAO_0000122
definition: A regulatory agency is a organization that has responsibility over or for the legislation (acts and regulations) for a given sector of the government.
definition editor: GROUP: OBI Biomaterial Branch
definition source: WEB: en.wikipedia.org/wiki/Regulator

material transformation objective
type: Class
subclass of: objective specification
editor preferred label: material transformation objective
example of usage: The objective to create a mouse infected with LCM virus. The objective to create a defined solution of PBS.
has curation status: IAO_0000122
definition: an objective specifiction that creates an specific output object from input materials.
definition editor: PERSON: Bjoern Peters
definition editor: PERSON: Frank Gibson
definition editor: PERSON: Jennifer Fostel
definition editor: PERSON: Melanie Courtot
definition editor: PERSON: Philippe Rocca-Serra
alternative term: artifact creation objective
definition source: GROUP: OBI PlanAndPlannedProcess Branch

manufacturing
type: Class
equivalent class: Restriction
  on property: achieves_planned_objective
  some values from: manufacturing objective
subclass of: material processing
subclass of: Restriction
  on property: has_specified_input
  some values from: material entity
subclass of: Restriction
  on property: achieves_planned_objective
  some values from: manufacturing objective
editor preferred label: manufacturing
has curation status: IAO_0000122
definition: Manufacturing is a process with the intent to produce a processed material which will have a function for future use. A person or organization (having manufacturer role) is a participant in this process
editor note: Manufacturing implies reproducibility and responsibility AR
editor note: This includes a single scientist making a processed material for personal use.
definition editor: PERSON: Bjoern Peters
definition editor: PERSON: Frank Gibson
definition editor: PERSON: Jennifer Fostel
definition editor: PERSON: Melanie Courtot
definition editor: PERSON: Philippe Rocca-Serra
definition source: GROUP: OBI PlanAndPlannedProcess Branch

manufacturing objective
type: Class
subclass of: material transformation objective
editor preferred label: manufacturing objective
has curation status: IAO_0000122
definition: is the objective to manufacture a material of a certain function (device)
definition editor: PERSON: Bjoern Peters
definition editor: PERSON: Frank Gibson
definition editor: PERSON: Jennifer Fostel
definition editor: PERSON: Melanie Courtot
definition editor: PERSON: Philippe Rocca-Serra
definition source: GROUP: OBI PlanAndPlannedProcess Branch

manufacturer role
type: Class
subclass of: role
subclass of: Restriction
  on property: inheres in
  some values from: Class
    union of: Homo sapiens
    union of: organization
subclass of: Restriction
  on property: realized in
  all values from: manufacturing
editor preferred label: manufacturer role
example of usage: With respect to The Accuri C6 Flow Cytometer System, the organization Accuri bears the role manufacturer role. With respect to a transformed line of tissue culture cells derived by a specific lab, the lab whose personnel isolated the cll line bears the role manufacturer role. With respect to a specific antibody produced by an individual scientist, the scientist who purifies, characterizes and distributes the anitbody bears the role manufacturer role.
has curation status: IAO_0000123
definition: Manufacturer role is a role which inheres in a person or organization and which is realized by a manufacturing process.
definition editor: GROUP: Role Branch
definition source: OBI

material separation objective
type: Class
equivalent class: Class
  union of: portioning objective
  union of: separation into different composition objective
subclass of: material transformation objective
editor preferred label: material separation objective
example of usage: The objective to obtain multiple aliquots of an enzyme preparation. The objective to obtain cells contained in a sample of blood.
has curation status: IAO_0000122
definition: is an objective to transform a material entity into spatially separated components.
definition editor: PPPB branch
definition source: PPPB branch

clustered data set
type: Class
equivalent class: Restriction
  on property: is_specified_output_of
  some values from: class discovery data transformation
subclass of: data set
subclass of: Restriction
  on property: is_specified_output_of
  some values from: class discovery data transformation
editor preferred label: clustered data set
example of usage: A clustered data set is the output of a K means clustering data transformation
has curation status: IAO_0000125
definition: A data set that is produced as the output of a class discovery data transformation and consists of a data set with assigned discovered class labels.
definition editor: PERSON: James Malone
definition editor: PERSON: Monnie McGee
alternative term: data set with assigned discovered class labels
curator note: AR thinks could be a data item instead

specimen collection process
type: Class
equivalent class: Class
  intersection of: planned process
  intersection of: Restriction
    on property: achieves_planned_objective
    some values from: specimen collection objective
subclass of: planned process
subclass of: Restriction
  on property: has_specified_input
  some values from: material entity
subclass of: Restriction
  on property: has_specified_output
  some values from: specimen
subclass of: Restriction
  on property: achieves_planned_objective
  some values from: specimen collection objective
editor preferred label: specimen collection process
example of usage: drawing blood from a patient for analysis, collecting a piece of a plant for depositing in a herbarium, buying meat from a butcher in order to measure its protein content in an investigation
has curation status: IAO_0000122
definition: A planned process with the objective of collecting a specimen.
editor note: Note: definition is in specimen creation objective which is defined as an objective to obtain and store a material entity for potential use as an input during an investigation.
editor note: Philly2013: A specimen collection can have as part a material entity acquisition, such as ordering from a bank. The distinction is that specimen collection necessarily involves the creation of a specimen role. However ordering cell lines cells from ATCC for use in an investigation is NOT a specimen collection, because the cell lines already have a specimen role.
editor note: Philly2013: The specimen_role for the specimen is created during the specimen collection process.
editor note: label changed to 'specimen collection process' on 10/27/2014, details see tracker: http://sourceforge.net/p/obi/obi-terms/716/
definition editor: Bjoern Peters
alternative term: specimen collection
curator note: 5/31/2012: This process is not necessarily an acquisition, as specimens may be collected from materials already in posession
curator note: 6/9/09: used at workshop

class prediction data transformation
type: Class
equivalent class: Class
  union of: Restriction
    on property: has_specified_output
    some values from: classified data set
  union of: Restriction
    on property: achieves_planned_objective
    some values from: class prediction objective
subclass of: data transformation
editor preferred label: class prediction data transformation
has curation status: IAO_0000122
definition: A class prediction data transformation (sometimes called supervised classification) is a data transformation that has objective class prediction.
definition editor: James Malone
alternative term: supervised classification data transformation
definition source: PERSON: James Malone

portioning objective
type: Class
subclass of: material separation objective
disjoint with: separation into different composition objective
editor preferred label: portioning objective
example of usage: The objective to obtain multiple aliquots of an enzyme preparation.
has curation status: IAO_0000123
definition: A material separation objective aiming to separate material into multiple portions, each of which contains a similar composition of the input material.

separation into different composition objective
type: Class
subclass of: material separation objective
editor preferred label: separation into different composition objective
example of usage: The objective to obtain cells contained in a sample of blood.
has curation status: IAO_0000120
definition: A material separation objective aiming to separate a material entity that has parts of different types, and end with at least one output that is a material with parts of fewer types (modulo impurities).
editor note: We should be using has the grain relations or concentrations to distinguish the portioning and other sub-objectives

specimen collection objective
type: Class
subclass of: objective specification
editor preferred label: specimen collection objective
example of usage: The objective to collect bits of excrement in the rainforest. The objective to obtain a blood sample from a patient.
has curation status: IAO_0000122
definition: A objective specification to obtain a material entity for potential use as an input during an investigation.
definition editor: Bjoern Peters
definition source: Bjoern Peters

support vector machine
type: Class
subclass of: class prediction data transformation
subclass of: Restriction
  on property: achieves_planned_objective
  some values from: class prediction objective
editor preferred label: support vector machine
has curation status: IAO_0000123
definition: A support vector machine is a data transformation with a class prediction objective based on the construction of a separating hyperplane that maximizes the margin between two data sets of vectors in n-dimensional space.
definition editor: James Malone
definition editor: Ryan Brinkman
alternative term: SVM
definition source: PERSON: Ryan Brinkman

decision tree induction objective
type: Class
subclass of: data transformation objective
editor preferred label: decision tree induction objective
has curation status: IAO_0000123
definition: A decision tree induction objective is a data transformation objective in which a tree-like graph of edges and nodes is created and from which the selection of each branch requires that some type of logical decision is made.
definition editor: James Malone

decision tree building data transformation
type: Class
equivalent class: Restriction
  on property: achieves_planned_objective
  some values from: decision tree induction objective
subclass of: data transformation
subclass of: Restriction
  on property: achieves_planned_objective
  some values from: decision tree induction objective
editor preferred label: decision tree building data transformation
has curation status: IAO_0000120
definition: A decision tree building data transformation is a data transformation that has objective decision tree induction.
definition editor: James Malone
definition source: PERSON: James Malone

GenePattern software
type: Class
subclass of: software
editor preferred label: GenePattern software
has curation status: IAO_0000120
definition: a software that provides access to more than 100 tools for gene expression analysis, proteomics, SNP analysis and common data processing tasks.
definition editor: James Malone
definition editor: Person:Helen Parkinson
definition source: WEB: http://www.broadinstitute.org/cancer/software/genepattern/

host role
type: Class
subclass of: role
subclass of: Restriction
  on property: inheres in
  some values from: organism
editor preferred label: host role
example of usage: In biology, a host is an organism that harbors a virus or parasite, or a mutual or commensal symbiont, typically providing nourishment and shelter. http://en.wikipedia.org/wiki/Host_(biology) 30 March 09
has curation status: IAO_0000120
definition: host role is a role played by an organism and realized by providing nourishment, shelter or a means of reproduction to another organism within the organism playing the host role
editor note: 30Mar09 virus reproducing inside a cell; bacteria causing a disease, host can be harmed or not. we want to avoid a cat sitting on my lap and an animal care technician; these are not examples or hosts; dental cares = on tooth, but part of outer layer of tooth, so covered by "within" in the definition
definition editor: GROUP: Role Branch
definition source: 30 Mar09 submitted by vaccine community
definition source: OBI
definition source: http://en.wikipedia.org/wiki/Host_(biology)
imported from: obi.owl
imported from: vo.owl

peak matching
type: Class
subclass of: data transformation
editor preferred label: peak matching
has curation status: IAO_0000123
definition: Peak matching is a data transformation performed on a dataset of a graph of ordered data points (e.g. a spectrum) with the objective of pattern matching local maxima above a noise threshold
definition editor: James Malone
definition editor: Ryan Brinkman
definition source: PERSON: Ryan Brinkman

k-nearest neighbors
type: Class
subclass of: partitioning data transformation
subclass of: class discovery data transformation
subclass of: Class
  intersection of: Restriction
    on property: has_specified_output
    some values from: clustered data set
  intersection of: Restriction
    on property: achieves_planned_objective
    some values from: class discovery objective
editor preferred label: k-nearest neighbors
has curation status: IAO_0000125
definition: A k-nearest neighbors is a data transformation which achieves a class discovery or partitioning objective, in which an input data object with vector y is assigned to a class label based upon the k closest training data set points to y; where k is the largest value that class label is assigned.
definition editor: James Malone
alternative term: k-NN
definition source: PERSON: James Malone

CART
type: Class
subclass of: decision tree building data transformation
editor preferred label: CART
has curation status: IAO_0000122
definition: A CART (classification and regression trees) is a data transformation method for producing a classification or regression model with a tree-based structure.
definition editor: James Malone
alternative term: classification and regression trees
definition source: BOOK: David J. Hand, Heikki Mannila and Padhraic Smyth (2001) Principles of Data Mining.

statistical model validation
type: Class
equivalent class: Restriction
  on property: achieves_planned_objective
  some values from: cross validation objective
subclass of: partitioning data transformation
subclass of: Restriction
  on property: achieves_planned_objective
  some values from: cross validation objective
editor preferred label: statistical model validation
example of usage: Using the expression levels of 20 proteins to predict whether a cancer patient will respond to a drug. A practical goal would be to determine which subset of the 20 features should be used to produce the best predictive model. - wikipedia
has curation status: IAO_0000120
definition: A data transformation which assesses how the results of a statistical analysis will generalize to an independent data set.
definition editor: Helen Parkinson
definition source: http://en.wikipedia.org/wiki/Cross-validation_%28statistics%29

material maintenance objective
type: Class
subclass of: objective specification
editor preferred label: material maintenance objective
has curation status: IAO_0000122
definition: An objective specification maintains some or all of the qualities of a material over time.
definition editor: PERSON: Bjoern Peters
definition source: PERSON: Bjoern Peters

manufacturer
type: Class
equivalent class: Class
  intersection of: Class
    union of: Homo sapiens
    union of: organization
  intersection of: Restriction
    on property: has_role
    some values from: manufacturer role
subclass of: material entity
subclass of: Restriction
  on property: has_role
  some values from: manufacturer role
editor preferred label: manufacturer
has curation status: IAO_0000123
definition: A person or organization that has a manufacturer role

material maintenance
type: Class
equivalent class: Restriction
  on property: achieves_planned_objective
  some values from: material maintenance objective
subclass of: planned process
subclass of: Restriction
  on property: achieves_planned_objective
  some values from: material maintenance objective
editor preferred label: material maintenance
has curation status: IAO_0000123
definition: a process with that achieves the objective to maintain some or all of the characteristics of an input material over time

service provider role
type: Class
subclass of: role
subclass of: Restriction
  on property: inheres in
  some values from: Class
    union of: Homo sapiens
    union of: organization
subclass of: Restriction
  on property: realized in
  all values from: planned process
editor preferred label: service provider role
example of usage: Jackson Lab provides experimental animals, EBI provides training on databases, a core facility provides access to a DNA sequencer.
has curation status: IAO_0000123
definition: is a role which inheres in a person or organization and is realized in in a planned process which provides access to training, materials or execution of protocols for an organization or person
definition editor: PERSON:Helen Parkinson

processed specimen
type: Class
equivalent class: Class
  intersection of: processed material
  intersection of: specimen
subclass of: processed material
subclass of: specimen
editor preferred label: processed specimen
example of usage: A tissue sample that has been sliced and stained for a histology study. A blood specimen that has been centrifuged to obtain the white blood cells.
has curation status: IAO_0000122
definition: A specimen that has been intentionally physically modified.
definition editor: Bjoern Peters
definition source: Bjoern Peters
comment: A tissue sample that has been sliced and stained for a histology study.

categorical label
type: Class
subclass of: datum label
editor preferred label: categorical label
example of usage: The labels 'positive' vs. 'negative', or 'left handed', 'right handed', 'ambidexterous', or 'strongly binding', 'weakly binding' , 'not binding', or '+++', '++', '+', '-' etc. form scales of categorical labels.
has curation status: IAO_0000120
definition: A label that is part of a categorical datum and that indicates the value of the data item on the categorical scale.
definition editor: Bjoern Peters
definition source: Bjoern Peters

questionnaire
type: Class
subclass of: document
editor preferred label: questionnaire
has curation status: IAO_0000120
definition: A document with a set of printed or written questions with a choice of answers, devised for the purposes of a survey or statistical study.
editor note: JT: It plays a role in collecting data that could be fleshed out more; but I'm thinking it is, in itself, an edited document. JZ: based on textual definition of edited document, it can be defined as N&S. I prefer to leave questionnaire as a document now. We can add more restrictions in the future and use that to determine it is an edited document or not.
editor note: Need to clarify if this is a document or a directive information entity (or what their connection is))
definition editor: PERSON: Jessica Turner
definition source: Merriam-Webster

specimen from organism
type: Class
equivalent class: Class
  intersection of: Restriction
    on property: has_role
    some values from: specimen role
  intersection of: Restriction
    on property: derives from
    some values from: Class
      union of: UBERON_0000465
      union of: UBERON_0000477
subclass of: specimen
subclass of: Restriction
  on property: derives from
  some values from: Class
    union of: UBERON_0000465
    union of: UBERON_0000477
editor preferred label: specimen from organism
has curation status: IAO_0000122
definition: A specimen that derives from an anatomical part or substance arising from an organism. Examples of tissue specimen include tissue, organ, physiological system, blood, or body location (arm).
definition editor: PERSON: Chris Stoeckert, Jie Zheng
alternative term: tissue specimen
definition source: MO_954 organism_part

secondary cultured cell
type: Class
subclass of: cultured cell
subclass of: Class
  union of: Restriction
    on property: is_specified_output_of
    some values from: cell culture splitting
  union of: Restriction
    on property: derives from
    some values from: Restriction
      on property: is_specified_output_of
      some values from: cell culture splitting
subclass of: Restriction
  on property: derives from
  some values from: primary cultured cell
editor preferred label: secondary cultured cell
has curation status: IAO_0000120
definition: A cultured cell that has been passaged or derives from a cell that has been passaged in culture.
editor note: The term 'secondary cell culture' is generally used in biological texts/protocols to refer to any culture following an initial passage. We include it here because there are often a number of passages between a primary culture and the establishment of a stable, homogenous cell line. Such cultures are considered to be 'secondary cultures' but not 'cell lines' during this intermediate passaging/selection period between their derivation from a 'primary cell culture' and derivation into a 'cell line', which is a more specific type of secondary culture.
definition editor: Person: Matthew Brush
definition source: PERSON: Matthew Brush
comment: A secondary cultured cell has been passaged in culture or is a descendant of such a cell that is derived through propagation in culture.

establishing cell line
type: Class
subclass of: establishing cell culture
subclass of: Restriction
  on property: has_specified_output
  some values from: cell line
editor preferred label: establishing cell line
has curation status: IAO_0000120
definition: a process whereby a new type of cell line is created, either through passaging of a primary cell culture to relative genetic stability and compositional homogeneity, or through some experimental modification of an existing cell line to produce a new line with novel characteristics (e.g. immortalization or some other stable genetic modification, or selection of some defined subset).
editor note: 2013-4-20 MHB: For cases of initial establilshment of a line from a primary culture, successive passaging and/or selection processes can confer increasing degrees of genetic stability and compositional homogeneity as compared to the input primary culture. Historically, many texts consider the first passage as the clearest point to define the beginning of a line. However, in practice it is more often that case that more than one passage, and possibly additional selective techniques, may be required before a culture is deemed to have sufficient stability and homogeneity to be considered cell line. This is the view taken in OBI. Regardless, what is important is that some intentional, experimental step has been taken to establish a more homogenous and stable culture that can be characterized and progatated over time.
definition editor: Person: Matthew Brush
definition source: PERSON:Matthew Brush
label: 建立细胞系 @zh

secondary cultured cell population
type: Class
subclass of: cultured cell population
subclass of: Restriction
  on property: is_specified_output_of
  some values from: cell culture splitting
subclass of: Restriction
  on property: has grain
  some values from: secondary cultured cell
subclass of: Restriction
  on property: has grain
  all values from: secondary cultured cell
editor preferred label: secondary cultured cell population
has curation status: IAO_0000120
definition: A cultured cell population that is derived through one or more passages in culture.
editor note: The term 'secondary cell culture' is generally used in biological texts/protocols to refer to any culture of cells following an initial passage. We include it here because there are often a number of passages between a primary culture and the establishment of a stable, homogenous cell line. Such cultures are considered to be 'secondary cultures' but not 'cell lines' during this intermediate passaging/selection period between their derivation from a 'primary cell culture' and derivation into a 'cell line', which is a more specific type of secondary culture.
definition editor: PERSON:Matthew Brush
alternative term: secondary cell culture sample
definition source: PERSON:Matthew Brush
comment: The concept of a 'secondary cultured cell population' covers cell lines as well as cultured cell populations more immediately derived from a primary culture which have yet to achieve adequate genetic stability and compositional homogeneity to be considered a cell line. The extent of the collection of cells in a 'secondary cultured cell population' is restricted only in that all cell members must share a propagation history (ie be derived through a common lineage of passages from an initial culture). Secondary cultured cell populations can be under active culture, stored in a quiescent state for future use, or applied experimentally.

cell freezing medium
type: Class
subclass of: processed material
editor preferred label: cell freezing medium
has curation status: IAO_0000120
definition: A processed material that serves as a liquid vehicle for freezing cells for long term quiescent stroage, which contains chemicls needed to sustain cell viability across freeze-thaw cycles.
definition editor: PERSON: Matthew Brush

categorical value specification
type: Class
subclass of: value specification
editor preferred label: categorical value specification
has curation status: IAO_0000123
definition: A value specification that is specifies one category out of a fixed number of nominal categories
definition editor: PERSON:Bjoern Peters

value specification
type: Class
subclass of: information content entity
editor preferred label: value specification
example of usage: The value of 'positive' in a classification scheme of "positive or negative"; the value of '20g' on the quantitative scale of mass.
has curation status: IAO_0000122
definition: An information content entity that specifies a value within a classification scheme or on a quantitative scale.
editor note: This term is currently a descendant of 'information content entity', which requires that it 'is about' something. A value specification of '20g' for a measurement data item of the mass of a particular mouse 'is about' the mass of that mouse. However there are cases where a value specification is not clearly about any particular. In the future we may change 'value specification' to remove the 'is about' requirement.
definition editor: PERSON:Bjoern Peters

collection of specimens
type: Class
equivalent class: Class
  intersection of: material entity
  intersection of: Restriction
    on property: has member
    all values from: specimen
subclass of: material entity
editor preferred label: collection of specimens
example of usage: Blood cells collected from multiple donors over the course of a study.
has curation status: IAO_0000125
definition: A material entity that has two or more specimens as its parts.
editor note: Details see tracker: https://sourceforge.net/p/obi/obi-terms/778/
definition editor: Person: Chris Stoeckert, Jie Zheng
definition source: OBIB, OBI
Source: Biobank

histologic grade according to AJCC 7th edition
type: Class
subclass of: categorical value specification
editor preferred label: histologic grade according to AJCC 7th edition
example of usage: G4: Undifferentiated
example of usage: G1:Well differentiated
has curation status: IAO_0000120
definition: A categorical value specification that is a histologic grade assigned to a tumor slide specimen according to the American Joint Committee on Cancer (AJCC) 7th Edition grading system.
definition editor: Chris Stoeckert, Helena Ellis
definition source: NCI BBRB, OBI
ontology term requester: NCI BBRB

histologic grade according to the Fuhrman Nuclear Grading System
type: Class
subclass of: categorical value specification
editor preferred label: histologic grade according to the Fuhrman Nuclear Grading System
has curation status: IAO_0000120
definition: A categorical value specification that is a histologic grade assigned to a tumor slide specimen according to the Fuhrman Nuclear Grading System.
definition editor: Chris Stoeckert, Helena Ellis
alternative term: Histologic Grade (Fuhrman Nuclear Grading System)
definition source: NCI BBRB, OBI
ontology term requester: NCI BBRB

histologic grade for ovarian tumor
type: Class
subclass of: categorical value specification
editor preferred label: histologic grade for ovarian tumor
has curation status: IAO_0000120
definition: A categorical value specification that is a histologic grade assigned to a ovarian tumor.
definition editor: Chris Stoeckert, Helena Ellis
definition source: NCI BBRB, OBI
ontology term requester: NCI BBRB

histologic grade for ovarian tumor according to a two-tier grading system
type: Class
subclass of: histologic grade for ovarian tumor
editor preferred label: histologic grade for ovarian tumor according to a two-tier grading system
has curation status: IAO_0000120
definition: A histologic grade for ovarian tumor that is from a two-tier histological classification of tumors.
definition editor: Chris Stoeckert, Helena Ellis
definition source: NCI BBRB, OBI
ontology term requester: NCI BBRB

histologic grade for ovarian tumor according to the World Health Organization
type: Class
subclass of: histologic grade for ovarian tumor
editor preferred label: histologic grade for ovarian tumor according to the World Health Organization
has curation status: IAO_0000120
definition: A histologic grade for ovarian tumor that is from a histological classification by the World Health Organization (WHO).
definition editor: Chris Stoeckert, Helena Ellis
definition source: NCI BBRB, OBI
ontology term requester: NCI BBRB

pathologic primary tumor stage for colon and rectum according to AJCC 7th edition
type: Class
subclass of: categorical value specification
editor preferred label: pathologic primary tumor stage for colon and rectum according to AJCC 7th edition
has curation status: IAO_0000120
definition: A categorical value specification that is a pathologic finding about one or more characteristics of colorectal cancer following the rules of the TNM American Joint Committee on Cancer (AJCC) version 7 classification system as they pertain to staging of the primary tumor. TNM pathologic primary tumor findings are based on clinical findings supplemented by histopathologic examination of one or more tissue specimens acquired during surgery.
definition editor: Chris Stoeckert, Helena Ellis
alternative term: pT: Pathologic spread colorectal primary tumor (AJCC 7th Edition)
definition source: NCI BBRB, OBI
ontology term requester: NCI BBRB

pathologic primary tumor stage for lung according to AJCC 7th edition
type: Class
subclass of: categorical value specification
editor preferred label: pathologic primary tumor stage for lung according to AJCC 7th edition
has curation status: IAO_0000120
definition: A categorical value specification that is a pathologic finding about one or more characteristics of lung cancer following the rules of the TNM American Joint Committee on Cancer (AJCC) version 7 classification system as they pertain to staging of the primary tumor. TNM pathologic primary tumor findings are based on clinical findings supplemented by histopathologic examination of one or more tissue specimens acquired during surgery.
definition editor: Chris Stoeckert, Helena Ellis
alternative term: pT: Pathologic spread lung primary tumor (AJCC 7th Edition)
definition source: NCI BBRB, OBI
ontology term requester: NCI BBRB

pathologic primary tumor stage for kidney according to AJCC 7th edition
type: Class
subclass of: categorical value specification
editor preferred label: pathologic primary tumor stage for kidney according to AJCC 7th edition
has curation status: IAO_0000120
definition: A categorical value specification that is a pathologic finding about one or more characteristics of renal cancer following the rules of the TNM AJCC v7 classification system as they pertain to staging of the primary tumor. TNM pathologic primary tumor findings are based on clinical findings supplemented by histopathologic examination of one or more tissue specimens acquired during surgery.
definition editor: Chris Stoeckert, Helena Ellis
alternative term: pT: Pathologic spread kidney primary tumor (AJCC 7th Edition)
definition source: NCI BBRB, OBI
ontology term requester: NCI BBRB

pathologic primary tumor stage for ovary according to AJCC 7th edition
type: Class
subclass of: categorical value specification
editor preferred label: pathologic primary tumor stage for ovary according to AJCC 7th edition
has curation status: IAO_0000120
definition: A categorical value specification that is a pathologic finding about one or more characteristics of ovarian cancer following the rules of the TNM AJCC v7 classification system as they pertain to staging of the primary tumor. TNM pathologic primary tumor findings are based on clinical findings supplemented by histopathologic examination of one or more tissue specimens acquired during surgery.
definition editor: Chris Stoeckert, Helena Ellis
alternative term: pT: Pathologic spread ovarian primary tumor (AJCC 7th Edition)
definition source: NCI BBRB, OBI
ontology term requester: NCI BBRB

pathologic lymph node stage for colon and rectum according to AJCC 7th edition
type: Class
subclass of: categorical value specification
editor preferred label: pathologic lymph node stage for colon and rectum according to AJCC 7th edition
has curation status: IAO_0000120
definition: A categorical value specification that is a pathologic finding about one or more characteristics of colorectal cancer following the rules of the TNM AJCC v7 classification system as they pertain to staging of regional lymph nodes.
definition editor: Chris Stoeckert, Helena Ellis
alternative term: pN: Pathologic spread colon lymph nodes (AJCC 7th Edition)
definition source: NCI BBRB, OBI
ontology term requester: NCI BBRB

pathologic lymph node stage for lung according to AJCC 7th edition
type: Class
subclass of: categorical value specification
editor preferred label: pathologic lymph node stage for lung according to AJCC 7th edition
has curation status: IAO_0000120
definition: A categorical value specification that is a pathologic finding about one or more characteristics of lung cancer following the rules of the TNM AJCC v7 classification system as they pertain to staging of regional lymph nodes.
definition editor: Chris Stoeckert, Helena Ellis
alternative term: pN: Pathologic spread colon lymph nodes (AJCC 7th Edition)
definition source: NCI BBRB, OBI
ontology term requester: NCI BBRB

pathologic lymph node stage for kidney according to AJCC 7th edition
type: Class
subclass of: categorical value specification
editor preferred label: pathologic lymph node stage for kidney according to AJCC 7th edition
has curation status: IAO_0000120
definition: A categorical value specification that is a pathologic finding about one or more characteristics of renal cancer following the rules of the TNM AJCC v7 classification system as they pertain to staging of regional lymph nodes.
definition editor: Chris Stoeckert, Helena Ellis
alternative term: pN: Pathologic spread kidney lymph nodes (AJCC 7th Edition)
definition source: NCI BBRB, OBI
ontology term requester: NCI BBRB

pathologic lymph node stage for ovary according to AJCC 7th edition
type: Class
subclass of: categorical value specification
editor preferred label: pathologic lymph node stage for ovary according to AJCC 7th edition
has curation status: IAO_0000120
definition: A categorical value specification that is a pathologic finding about one or more characteristics of ovarian cancer following the rules of the TNM AJCC v7 classification system as they pertain to staging of regional lymph nodes.
definition editor: Chris Stoeckert, Helena Ellis
alternative term: pN: Pathologic spread ovarian lymph nodes (AJCC 7th Edition)
definition source: NCI BBRB, OBI
ontology term requester: NCI BBRB

pathologic distant metastases stage for colon according to AJCC 7th edition
type: Class
subclass of: categorical value specification
editor preferred label: pathologic distant metastases stage for colon according to AJCC 7th edition
has curation status: IAO_0000120
definition: A categorical value specification that is a pathologic finding about one or more characteristics of colon cancer following the rules of the TNM AJCC v7 classification system as they pertain to distant metastases. TNM pathologic distant metastasis findings are based on clinical findings supplemented by histopathologic examination of one or more tissue specimens acquired during surgery.
definition editor: Chris Stoeckert, Helena Ellis
alternative term: M: colon distant metastases (AJCC 7th Edition)
definition source: NCI BBRB, OBI
ontology term requester: NCI BBRB

pathologic distant metastases stage for lung according to AJCC 7th edition
type: Class
subclass of: categorical value specification
editor preferred label: pathologic distant metastases stage for lung according to AJCC 7th edition
has curation status: IAO_0000120
definition: A categorical value specification that is a pathologic finding about one or more characteristics of lung cancer following the rules of the TNM AJCC v7 classification system as they pertain to distant metastases. TNM pathologic distant metastasis findings are based on clinical findings supplemented by histopathologic examination of one or more tissue specimens acquired during surgery.
definition editor: Chris Stoeckert, Helena Ellis
alternative term: M: lung distant metastases (AJCC 7th Edition)
definition source: NCI BBRB, OBI
ontology term requester: NCI BBRB

pathologic distant metastases stage for kidney according to AJCC 7th edition
type: Class
subclass of: categorical value specification
editor preferred label: pathologic distant metastases stage for kidney according to AJCC 7th edition
has curation status: IAO_0000120
definition: A categorical value specification that is a pathologic finding about one or more characteristics of renal cancer following the rules of the TNM AJCC v7 classification system as they pertain to distant metastases. TNM pathologic distant metastasis findings are based on clinical findings supplemented by histopathologic examination of one or more tissue specimens acquired during surgery.
definition editor: Chris Stoeckert, Helena Ellis
alternative term: M: kidney distant Metastases (AJCC 7th Edition)
definition source: NCI BBRB, OBI
ontology term requester: NCI BBRB

pathologic distant metastases stage for ovary according to AJCC 7th edition
type: Class
subclass of: categorical value specification
editor preferred label: pathologic distant metastases stage for ovary according to AJCC 7th edition
has curation status: IAO_0000120
definition: A categorical value specification that is a pathologic finding about one or more characteristics of ovarian cancer following the rules of the TNM AJCC v7 classification system as they pertain to distant metastases. TNM pathologic distant metastasis findings are based on clinical findings supplemented by histopathologic examination of one or more tissue specimens acquired during surgery.
definition editor: Chris Stoeckert, Helena Ellis
alternative term: M: ovarian distant metastases (AJCC 7th Edition)
definition source: NCI BBRB, OBI
ontology term requester: NCI BBRB

clinical tumor stage group according to AJCC 7th edition
type: Class
subclass of: categorical value specification
editor preferred label: clinical tumor stage group according to AJCC 7th edition
has curation status: IAO_0000120
definition: A categorical value specification that is an assessment of the stage of a cancer according to the American Joint Committee on Cancer (AJCC) v7 staging systems.
definition editor: Chris Stoeckert, Helena Ellis
alternative term: Clinical tumor stage group (AJCC 7th Edition)
definition source: NCI BBRB, OBI
ontology term requester: NCI BBRB

International Federation of Gynecology and Obstetrics cervical cancer stage value specification
type: Class
subclass of: categorical value specification
editor preferred label: International Federation of Gynecology and Obstetrics cervical cancer stage value specification
has curation status: IAO_0000120
definition: A categorical value specification that is an assessment of the stage of a gynecologic cancer according to the International Federation of Gynecology and Obstetrics (FIGO) staging systems.
definition editor: Chris Stoeckert, Helena Ellis
alternative term: Clinical FIGO stage
definition source: NCI BBRB, OBI
ontology term requester: NCI BBRB

International Federation of Gynecology and Obstetrics ovarian cancer stage value specification
type: Class
subclass of: categorical value specification
editor preferred label: International Federation of Gynecology and Obstetrics ovarian cancer stage value specification
has curation status: IAO_0000120
definition: A categorical value specification that is a pathologic finding about one or more characteristics of ovarian cancer following the rules of the FIGO classification system.
definition editor: Chris Stoeckert, Helena Ellis
alternative term: Pathologic Tumor Stage Grouping for ovarian cancer (FIGO)
definition source: NCI BBRB, OBI
ontology term requester: NCI BBRB

performance status value specification
type: Class
subclass of: categorical value specification
editor preferred label: performance status value specification
has curation status: IAO_0000120
definition: A categorical value specification that is an assessment of a participant's performance status (general well-being and activities of daily life).
definition editor: Chris Stoeckert, Helena Ellis
alternative term: Performance Status Scale
definition source: https://en.wikipedia.org/wiki/Performance_status
ontology term requester: NCI BBRB

Eastern Cooperative Oncology Group score value specification
type: Class
subclass of: performance status value specification
editor preferred label: Eastern Cooperative Oncology Group score value specification
has curation status: IAO_0000120
definition: A performance status value specification designed by the Eastern Cooperative Oncology Group to assess disease progression and its affect on the daily living abilities of the patient.
definition editor: Chris Stoeckert, Helena Ellis
alternative term: ECOG score
definition source: NCI BBRB, OBI
ontology term requester: NCI BBRB

Karnofsky score vaue specification
type: Class
subclass of: performance status value specification
editor preferred label: Karnofsky score vaue specification
has curation status: IAO_0000120
definition: A performance status value specification designed for classifying patients 16 years of age or older by their functional impairment.
definition editor: Chris Stoeckert, Helena Ellis
alternative term: Karnofsky Score
definition source: NCI BBRB, OBI
ontology term requester: NCI BBRB

Epstein Barr virus transformed B cell
type: Class
equivalent class: Class
  intersection of: Restriction
    on property: is_specified_output_of
    some values from: Class
      intersection of: establishing cell culture
      intersection of: Restriction
        on property: has_specified_input
        some values from: Viruses
  intersection of: Restriction
    on property: derives from
    all values from: B cell
subclass of: processed material
subclass of: Restriction
  on property: is_specified_output_of
  some values from: Class
    intersection of: establishing cell culture
    intersection of: Restriction
      on property: has_specified_input
      some values from: Viruses
editor preferred label: Epstein Barr virus transformed B cell
example of usage: PMID: 8777380. Expression of thyroid peroxidase in EBV-transformed B cell lines using adenovirus.Thyroid. 1996 Feb;6(1):23-8.
has curation status: IAO_0000120
definition: A material entity which results from viral transformation process using EBV as transformation agent when applied to B-cell entity
definition editor: PERSON: Susanna Sansone
definition source: GROUP: OBI Biomaterial Branch

organism
type: Class
equivalent class: Class
  union of: Viruses
  union of: Bacteria
  union of: Archaea
  union of: Eukaryota
subclass of: object
subclass of: Restriction
  on property: has_part
  some values from: genome
editor preferred label: organism
example of usage: animal
example of usage: fungus
example of usage: plant
example of usage: virus
has curation status: IAO_0000121
has curation status: IAO_0000122
definition: A material entity that is an individual living system, such as animal, plant, bacteria or virus, that is capable of replicating or reproducing, growth and maintenance in the right environment. An organism may be unicellular or made up, like humans, of many billions of cells divided into specialized tissues and organs.
editor note: 10/21/09: This is a placeholder term, that should ideally be imported from the NCBI taxonomy, but the high level hierarchy there does not suit our needs (includes plasmids and 'other organisms')
editor note: 13-02-2009: OBI doesn't take position as to when an organism starts or ends being an organism - e.g. sperm, foetus. This issue is outside the scope of OBI.
definition editor: GROUP: OBI Biomaterial Branch
definition source: WEB: http://en.wikipedia.org/wiki/Organism
imported from: ido.owl
imported from: obi.owl
有_obo_命名空间: obi
id: OBI:0100026

specimen
type: Class
equivalent class: Class
  intersection of: material entity
  intersection of: Restriction
    on property: has_role
    some values from: specimen role
subclass of: material entity
subclass of: Restriction
  on property: has_role
  some values from: specimen role
editor preferred label: specimen
example of usage: Biobanking of blood taken and stored in a freezer for potential future investigations stores specimen.
has curation status: IAO_0000122
definition: A material entity that has the specimen role.
editor note: Note: definition is in specimen creation objective which is defined as an objective to obtain and store a material entity for potential use as an input during an investigation.
definition editor: PERSON: James Malone
definition editor: PERSON: Philippe Rocca-Serra
definition source: GROUP: OBI Biomaterial Branch

cultured cell population
type: Class
subclass of: processed material
subclass of: Restriction
  on property: is_specified_output_of
  some values from: maintaining cell culture
subclass of: Restriction
  on property: has grain
  some values from: cultured cell
subclass of: Restriction
  on property: has grain
  all values from: cultured cell
editor preferred label: cultured cell population
example of usage: A cultured cell population applied in an experiment: "293 cells expressing TrkA were serum-starved for 18 hours and then neurotrophins were added for 10 min before cell harvest." (Lee, Ramee, et al. "Regulation of cell survival by secreted proneurotrophins." Science 294.5548 (2001): 1945-1948). A cultured cell population maintained in vitro: "Rat cortical neurons from 15 day embryos are grown in dissociated cell culture and maintained in vitro for 8–12 weeks" (Dichter, Marc A. "Rat cortical neurons in cell culture: culture methods, cell morphology, electrophysiology, and synapse formation." Brain Research 149.2 (1978): 279-293).
has curation status: IAO_0000120
definition: A processed material comprised of a collection of cultured cells that has been continuously maintained together in culture and shares a common propagation history.
editor note: 2013-6-5 MHB: This OBI class was formerly called 'cell culture', but label changed and definition updated following CLO alignment efforts in spring 2013, during which the intent of this class was clarified to refer to portions of a culture or line rather than a complete cell culture or line.
definition editor: PERSON:Matthew Brush
alternative term: cell culture sample
definition source: PERSON:Matthew Brush
comment: The extent of a 'cultured cell population' is restricted only in that all cell members must share a propagation history (ie be derived through a common lineage of passages from an initial culture). In being defined in this way, this class can be used to refer to the populations that researchers actually use in the practice of science - ie are the inputs to culturing, experimentation, and sharing. The cells in such populations will be a relatively uniform population as they have experienced similar selective pressures due to their continuous co-propagation. And this population will also have a single passage number, again owing to their common passaging history. Cultured cell populations represent only a collection of cells (ie do not include media, culture dishes, etc), and include populations of cultured unicellular organisms or cultured multicellular organism cells. They can exist under active culture, stored in a quiescent state for future use, or applied experimentally.

data transformation
type: Class
equivalent class: Restriction
  on property: achieves_planned_objective
  some values from: data transformation objective
subclass of: planned process
subclass of: Restriction
  on property: realizes
  some values from: Restriction
    on property: concretizes
    some values from: Class
      intersection of: algorithm
      intersection of: Restriction
        on property: has_part
        some values from: objective specification
subclass of: Restriction
  on property: achieves_planned_objective
  some values from: data transformation objective
subclass of: Restriction
  on property: has_specified_input
  all values from: data item
editor preferred label: data transformation
example of usage: The application of a clustering protocol to microarray data or the application of a statistical testing method on a primary data set to determine a p-value.
has curation status: IAO_0000122
definition: A planned process that produces output data from input data.
definition editor: Elisabetta Manduchi
definition editor: Helen Parkinson
definition editor: James Malone
definition editor: Melanie Courtot
definition editor: Philippe Rocca-Serra
definition editor: Richard Scheuermann
definition editor: Ryan Brinkman
definition editor: Tina Hernandez-Boussard
alternative term: data analysis
alternative term: data processing
definition source: Branch editors

leave one out cross validation method
type: Class
subclass of: statistical model validation
editor preferred label: leave one out cross validation method
example of usage: The authors conducted leave-one-out cross validation to estimate the strength and accuracy of the differentially expressed filtered genes. http://bioinformatics.oxfordjournals.org/cgi/content/abstract/19/3/368
has curation status: IAO_0000123
definition: is a data transformation : leave-one-out cross-validation (LOOCV) involves using a single observation from the original sample as the validation data, and the remaining observations as the training data. This is repeated such that each observation in the sample is used once as the validation data
editor note: 2009-11-10. Tracker: https://sourceforge.net/tracker/?func=detail&aid=2893049&group_id=177891&atid=886178
definition editor: Person:Helen Parkinson

k-means clustering
type: Class
subclass of: partitioning data transformation
subclass of: class discovery data transformation
subclass of: Class
  intersection of: Restriction
    on property: has_specified_output
    some values from: clustered data set
  intersection of: Restriction
    on property: achieves_planned_objective
    some values from: class discovery objective
editor preferred label: k-means clustering
has curation status: IAO_0000125
definition: A k-means clustering is a data transformation which achieves a class discovery or partitioning objective, which takes as input a collection of objects (represented as points in multidimensional space) and which partitions them into a specified number k of clusters. The algorithm attempts to find the centers of natural clusters in the data. The most common form of the algorithm starts by partitioning the input points into k initial sets, either at random or using some heuristic data. It then calculates the mean point, or centroid, of each set. It constructs a new partition by associating each point with the closest centroid. Then the centroids are recalculated for the new clusters, and the algorithm repeated by alternate applications of these two steps until convergence, which is obtained when the points no longer switch clusters (or alternatively centroids are no longer changed).
definition editor: Elisabetta Manduchi
definition editor: James Malone
definition editor: Philippe Rocca-Serra
definition source: WEB: http://en.wikipedia.org/wiki/K-means

hierarchical clustering
type: Class
subclass of: class discovery data transformation
subclass of: Class
  intersection of: Restriction
    on property: has_specified_output
    some values from: clustered data set
  intersection of: Restriction
    on property: achieves_planned_objective
    some values from: class discovery objective
editor preferred label: hierarchical clustering
has curation status: IAO_0000125
definition: A hierarchical clustering is a data transformation which achieves a class discovery objective, which takes as input data item and builds a hierarchy of clusters. The traditional representation of this hierarchy is a tree (visualized by a dendrogram), with the individual input objects at one end (leaves) and a single cluster containing every object at the other (root).
definition editor: James Malone
definition source: WEB: http://en.wikipedia.org/wiki/Data_clustering#Hierarchical_clustering

dimensionality reduction
type: Class
subclass of: class discovery data transformation
subclass of: Class
  intersection of: Restriction
    on property: has_specified_output
    some values from: clustered data set
  intersection of: Restriction
    on property: achieves_planned_objective
    some values from: class discovery objective
editor preferred label: dimensionality reduction
has curation status: IAO_0000122
definition: A dimensionality reduction is data partitioning which transforms each input m-dimensional vector (x_1, x_2, ..., x_m) into an output n-dimensional vector (y_1, y_2, ..., y_n), where n is smaller than m.
definition editor: Elisabetta Manduchi
definition editor: James Malone
definition editor: Melanie Courtot
definition editor: Philippe Rocca-Serra
alternative term: data projection
definition source: PERSON: Elisabetta Manduchi
definition source: PERSON: James Malone
definition source: PERSON: Melanie Courtot

principal components analysis dimensionality reduction
type: Class
subclass of: dimensionality reduction
editor preferred label: principal components analysis dimensionality reduction
has curation status: IAO_0000122
definition: A principal components analysis dimensionality reduction is a dimensionality reduction achieved by applying principal components analysis and by keeping low-order principal components and excluding higher-order ones.
definition editor: Elisabetta Manduchi
definition editor: James Malone
definition editor: Melanie Courtot
definition editor: Philippe Rocca-Serra
alternative term: pca data reduction
definition source: PERSON: Elisabetta Manduchi
definition source: PERSON: James Malone
definition source: PERSON: Melanie Courtot

data visualization
type: Class
subclass of: planned process
subclass of: Restriction
  on property: has_specified_input
  some values from: data item
subclass of: Restriction
  on property: has_specified_output
  some values from: Class
    union of: graph
    union of: image
subclass of: Restriction
  on property: has_specified_input
  all values from: data item
subclass of: Restriction
  on property: has_specified_output
  all values from: Class
    union of: graph
    union of: image
editor preferred label: data visualization
example of usage: Generation of a heatmap from a microarray dataset
has curation status: IAO_0000122
definition: An planned process that creates images, diagrams or animations from the input data.
definition editor: Elisabetta Manduchi
definition editor: James Malone
definition editor: Melanie Courtot
definition editor: Tina Boussard
alternative term: data encoding as image
alternative term: visualization
definition source: PERSON: Elisabetta Manduchi
definition source: PERSON: James Malone
definition source: PERSON: Melanie Courtot
definition source: PERSON: Tina Boussard
curator note: Possible future hierarchy might include this: information_encoding >data_encoding >>image_encoding

data transformation objective
type: Class
subclass of: objective specification
editor preferred label: data transformation objective
example of usage: normalize objective
has curation status: IAO_0000122
definition: An objective specification to transformation input data into output data
editor note: Modified definition in 2013 Philly OBI workshop
definition editor: James Malone
definition source: PERSON: James Malone

partitioning data transformation
type: Class
equivalent class: Restriction
  on property: achieves_planned_objective
  some values from: partitioning objective
subclass of: data transformation
subclass of: Restriction
  on property: achieves_planned_objective
  some values from: partitioning objective
editor preferred label: partitioning data transformation
has curation status: IAO_0000123
definition: A partitioning data transformation is a data transformation that has objective partitioning.
definition editor: James Malone
definition source: PERSON: James Malone

partitioning objective
type: Class
subclass of: data transformation objective
editor preferred label: partitioning objective
example of usage: A k-means clustering which has partitioning objective is a data transformation in which the input data is partitioned into k output sets.
has curation status: IAO_0000122
definition: A partitioning objective is a data transformation objective where the aim is to generate a collection of disjoint non-empty subsets whose union equals a non-empty input set.
definition editor: Elisabetta Manduchi
definition editor: James Malone
definition source: PERSON: Elisabetta Manduchi

class discovery data transformation
type: Class
equivalent class: Class
  union of: Restriction
    on property: has_specified_output
    some values from: clustered data set
  union of: Restriction
    on property: achieves_planned_objective
    some values from: class discovery objective
subclass of: data transformation
editor preferred label: class discovery data transformation
has curation status: IAO_0000122
definition: A class discovery data transformation (sometimes called unsupervised classification) is a data transformation that has objective class discovery.
definition editor: James Malone
alternative term: clustering data transformation
alternative term: unsupervised classification data transformation
definition source: PERSON: James Malone

class discovery objective
type: Class
subclass of: data transformation objective
editor preferred label: class discovery objective
has curation status: IAO_0000122
definition: A class discovery objective (sometimes called unsupervised classification) is a data transformation objective where the aim is to organize input data (typically vectors of attributes) into classes, where the number of classes and their specifications are not known a priori. Depending on usage, the class assignment can be definite or probabilistic.
definition editor: James Malone
alternative term: clustering objective
alternative term: discriminant analysis objective
alternative term: unsupervised classification objective
definition source: PERSON: Elisabetta Manduchi
definition source: PERSON: James Malone

class prediction objective
type: Class
subclass of: data transformation objective
editor preferred label: class prediction objective
has curation status: IAO_0000122
definition: A class prediction objective (sometimes called supervised classification) is a data transformation objective where the aim is to create a predictor from training data through a machine learning technique. The training data consist of pairs of objects (typically vectors of attributes) and class labels for these objects. The resulting predictor can be used to attach class labels to any valid novel input object. Depending on usage, the prediction can be definite or probabilistic. A classification is learned from the training data and can then be tested on test data.
definition editor: James Malone
alternative term: classification objective
alternative term: supervised classification objective
definition source: PERSON: Elisabetta Manduchi
definition source: PERSON: James Malone

cross validation objective
type: Class
subclass of: partitioning objective
editor preferred label: cross validation objective
has curation status: IAO_0000125
definition: A cross validation objective is a data transformation objective in which the aim is to partition a sample of data into subsets such that the analysis is initially performed on a single subset, while the other subset(s) are retained for subsequent use in confirming and validating the initial analysis.
definition editor: James Malone
alternative term: rotation estimation objective
definition source: WEB: http://en.wikipedia.org/wiki/Cross_validation

clustered data visualization
type: Class
subclass of: data visualization
subclass of: Restriction
  on property: has_specified_output
  some values from: Class
    union of: dot plot
    union of: histogram
    union of: heatmap
    union of: dendrogram
    union of: scatter plot
subclass of: Restriction
  on property: has_specified_input
  all values from: clustered data set
editor preferred label: clustered data visualization
has curation status: IAO_0000123
definition: A data visualization which has input of a clustered data set and produces an output of a report graph which is capable of rendering data of this type.
definition editor: James Malone

material component separation
type: Class
equivalent class: Restriction
  on property: achieves_planned_objective
  some values from: material separation objective
subclass of: material processing
subclass of: Restriction
  on property: has_specified_input
  some values from: material entity
subclass of: Restriction
  on property: achieves_planned_objective
  some values from: material separation objective
editor preferred label: material component separation
example of usage: Using a cell sorter to separate a mixture of T cells into two fractions; one with surface receptor CD8 and the other lacking the receptor, or purification
has curation status: IAO_0000122
definition: a material processing in which components of an input material become segregated in space
definition editor: Bjoern Peters
definition source: IEDB

maintaining cell culture
type: Class
subclass of: material maintenance
subclass of: Restriction
  on property: has_specified_input
  some values from: cultured cell population
subclass of: Restriction
  on property: has_specified_input
  some values from: Class
    union of: culture medium
    union of: cell freezing medium
subclass of: Restriction
  on property: has_specified_output
  some values from: cultured cell population
editor preferred label: maintaining cell culture
example of usage: When harvesting blood from a human, isolating T cells, and then limited dilution cloning of the cells, the maintaining_cell_culture step comprises all steps after the initial dilution and plating of the cells into culture, e.g. placing the culture into an incubator, changing or adding media, and splitting a cell culture
has curation status: IAO_0000125
definition: a protocol application in which cells are kept alive in a defined environment outside of an organism. part of cell_culturing
definition editor: PlanAndPlannedProcess Branch
definition source: OBI branch derived

establishing cell culture
type: Class
subclass of: material processing
subclass of: Restriction
  on property: has_specified_input
  some values from: cell
subclass of: Restriction
  on property: has_specified_input
  some values from: culture medium
subclass of: Restriction
  on property: has_specified_output
  some values from: cultured cell population
editor preferred label: 'establishing cell culture'
has curation status: IAO_0000120
definition: a process through which a new type of cell culture or cell line is created, either through the isolation and culture of one or more cells from a fresh source, or the deliberate experimental modification of an existing cell culture (e.g passaging a primary culture to become a secondary culture or line, or the immortalization or stable genetic modification of an existing culture or line).
definition editor: PERSON:Matthew Brush
definition source: PERSON:Matthew Brush
comment: A 'cell culture' as used here referes to a new lineage of cells in culture deriving from a single biological source.. New cultures are established through the initial isolation and culturing of cells from an organismal source, or through changes in an existing cell culture or line that result in a new culture with unique characteristics. This can occur through the passaging/selection of a primary culture into a secondary culture or line, or experimental modifications of an existing cell culture or line such as an immortalization process or other stable genetic modification. This class covers establishment of cultures of either multicellular organism cells or unicellular organisms.

cell culture splitting
type: Class
subclass of: material component separation
subclass of: Restriction
  on property: has_specified_input
  some values from: cultured cell population
subclass of: Restriction
  on property: has_specified_output
  some values from: cultured cell population
subclass of: Restriction
  on property: achieves_planned_objective
  some values from: portioning objective
editor preferred label: cell culture splitting
example of usage: The act of taking a cell culture of high density, counting the cells, removing part of the cells, and re-seeding a select number of the cells into new flasks with fresh tissue culture media.
has curation status: IAO_0000125
definition: The act of taking part of a homogeneous cell culture and creating one or more additional separate cultures of similar qualities. input: cell_culture, output cell_culture min cardinality 2. part of cell culturing
definition editor: PlanAndPlannedProcess Branch
alternative term: cell culture passaging
definition source: OBI branch derived
comment: An active cell culture is typically split when it has grown to confluence in its culture dish. Cell culture splitting of a cell culture sample results in an increase in its passage number, which measures how long a sample has been propagated in vitro, and therefore how many selective or genetic changes it is likely to have undergone.

genome
type: Class
subclass of: material entity
subclass of: Restriction
  on property: has_part
  some values from: gene
definition: A genome is a material entity that represents the entirety of an organism's hereditary information. The genome includes both the genes and the non-coding sequences of the DNA and RNA.
definition editor: Oliver He
definition source: Book: Eugene Nester, Denise Anderson, C. Evans Roberts, Jr., Microbiology (Companion Site): A Human Perspective, 7th Edition. Mcgraw Hill, October 18, 2011. ISBN-13: 978-0073375311
definition source: WEB: http://en.wikipedia.org/wiki/Genome

gene
type: Class
subclass of: material entity
definition: A gene is a material entity that represents the entire DNA sequence required for synthesis of a functional protein or RNA molecule.
definition editor: Oliver He
definition source: WEB: http://www.ncbi.nlm.nih.gov/books/NBK21640/
comment: In addition to the coding regions (exons), a gene includes transcription-control regions and sometimes introns. Although the majority of genes encode proteins, some encode tRNAs, rRNAs, and other types of RNA.

gene type
type: Class
subclass of: disposition
definition: a disposition that a gene can be used as a blueprint for generating a new form of product such as protein.
definition editor: Yongqun He, Bin Zhao
definition source: WEB: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/lxr/source/src/objects/entrezgene/entrezgene.asn
comment: According to NCBI Gene project, there are two gene types: unknown (0) , tRNA (1) , rRNA (2) , snRNA (3) , scRNA (4) , snoRNA (5) , protein-coding (6) , pseudo (7) , transposon (8) , miscRNA (9) , ncRNA (10) , other (255).

protein-coding gene type
type: Class
subclass of: gene type
definition: a gene type that is protein-coding, i.e., the gene encodes for a protein. .
definition editor: Yongqun He, Bin Zhao
definition source: WEB: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/lxr/source/src/objects/entrezgene/entrezgene.asn

RNA gene type
type: Class
subclass of: gene type
definition: a gene type that is tRNA, i.e., this gene encodes for a RNA.
definition editor: Yongqun He, Bin Zhao
definition source: WEB: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/lxr/source/src/objects/entrezgene/entrezgene.asn

rRNA gene type
type: Class
subclass of: RNA gene type
definition: a RNA gene type that is tRNA, i.e., this gene encodes for a rRNA.
definition editor: Yongqun He, Bin Zhao
definition source: WEB: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/lxr/source/src/objects/entrezgene/entrezgene.asn

snRNA gene type
type: Class
subclass of: RNA gene type
definition: a RNA gene type that is tRNA, i.e., this gene encodes for a rRNA.
definition editor: Yongqun He, Bin Zhao
definition source: WEB: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/lxr/source/src/objects/entrezgene/entrezgene.asn

tRNA gene type
type: Class
subclass of: RNA gene type
definition: a RNA gene type that is tRNA, i.e., this gene encodes for a tRNA.
definition editor: Yongqun He, Bin Zhao
definition source: WEB: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/lxr/source/src/objects/entrezgene/entrezgene.asn

scRNA gene type
type: Class
subclass of: RNA gene type
definition: a RNA gene type that is scRNA, i.e., this gene encodes for a scRNA.
definition editor: Yongqun He, Bin Zhao
definition source: WEB: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/lxr/source/src/objects/entrezgene/entrezgene.asn

snoRNA gene type
type: Class
subclass of: RNA gene type
definition: a RNA gene type that is snoRNA, i.e., this gene encodes for a snoRNA.
definition editor: Yongqun He, Bin Zhao
definition source: WEB: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/lxr/source/src/objects/entrezgene/entrezgene.asn

miscRNA gene type
type: Class
subclass of: RNA gene type
definition: a RNA gene type that is miscRNA, i.e., this gene encodes for a miscRNA.
definition editor: Yongqun He, Bin Zhao
definition source: WEB: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/lxr/source/src/objects/entrezgene/entrezgene.asn

ncRNA gene type
type: Class
subclass of: RNA gene type
definition: a RNA gene type that is ncRNA, i.e., this gene encodes for a ncRNA.
definition editor: Yongqun He, Bin Zhao
definition source: WEB: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/lxr/source/src/objects/entrezgene/entrezgene.asn

pseudo gene type
type: Class
subclass of: gene type
definition: a gene type that is pseudo, i.e., the gene is a pseudogene.
definition editor: Yongqun He, Bin Zhao
definition source: WEB: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/lxr/source/src/objects/entrezgene/entrezgene.asn

transposon gene type
type: Class
subclass of: gene type
definition: a gene type that is transposon, i.e., the gene encodes for a transposon.
definition editor: Yongqun He, Bin Zhao
definition source: WEB: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/lxr/source/src/objects/entrezgene/entrezgene.asn

other gene type
type: Class
subclass of: gene type
definition: a gene type that is "other", i.e., the gene is for a gene product that is not listed for another other gene type.
definition editor: Yongqun He, Bin Zhao
definition source: WEB: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/lxr/source/src/objects/entrezgene/entrezgene.asn

unknown gene type
type: Class
subclass of: gene type
definition: a gene type that is "unknown", i.e., the gene product is unknown.
definition editor: Yongqun He, Bin Zhao
definition source: WEB: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/lxr/source/src/objects/entrezgene/entrezgene.asn

genome of Bacteria
type: Class
subclass of: genome
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000000002
subclass of: Restriction
  on property: is genome of organism
  some values from: Bacteria
definition: The genome of an organism of Bacteria
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 2

genome of Spirochaetales
type: Class
subclass of: genome of Bacteria
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000000136
subclass of: Restriction
  on property: is genome of organism
  some values from: Spirochaetales
definition: The genome of an organism of Spirochaetales
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 136

genome of Borrelia burgdorferi
type: Class
subclass of: genome of Spirochaetales
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000000139
subclass of: Restriction
  on property: is genome of organism
  some values from: Borrelia burgdorferi
definition: The genome of an organism of Borrelia burgdorferi
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 139

genome of Campylobacter jejuni
type: Class
subclass of: genome of Campylobacterales
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000000197
subclass of: Restriction
  on property: is genome of organism
  some values from: Campylobacter jejuni
definition: The genome of an organism of Campylobacter jejuni
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 197

genome of Helicobacter pylori
type: Class
subclass of: genome of Campylobacterales
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000000210
subclass of: Restriction
  on property: is genome of organism
  some values from: Helicobacter pylori
definition: The genome of an organism of Helicobacter pylori
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 210

genome of Brucella
type: Class
subclass of: genome of Rhizobiales
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000000234
subclass of: Restriction
  on property: is genome of organism
  some values from: Brucella
definition: The genome of an organism of Brucella
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 234

genome of Brucella abortus
type: Class
subclass of: genome of Brucella
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000000235
subclass of: Restriction
  on property: is genome of organism
  some values from: Brucella abortus
definition: The genome of an organism of Brucella abortus
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 235

genome of Francisella tularensis
type: Class
subclass of: genome of Gammaproteobacteria
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000000263
subclass of: Restriction
  on property: is genome of organism
  some values from: Francisella tularensis
definition: The genome of an organism of Francisella tularensis
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 263

genome of Pseudomonas aeruginosa
type: Class
subclass of: genome of Gammaproteobacteria
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000000287
subclass of: Restriction
  on property: is genome of organism
  some values from: Pseudomonas aeruginosa
definition: The genome of an organism of Pseudomonas aeruginosa
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 287

genome of Rhizobiales
type: Class
subclass of: genome of Alphaproteobacteria
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000000356
subclass of: Restriction
  on property: is genome of organism
  some values from: Rhizobiales
definition: The genome of an organism of Rhizobiales
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 356

genome of Legionella pneumophila
type: Class
subclass of: genome of Legionellales
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000000446
subclass of: Restriction
  on property: is genome of organism
  some values from: Legionella pneumophila
definition: The genome of an organism of Legionella pneumophila
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 446

genome of Neisseria meningitidis
type: Class
subclass of: genome of Betaproteobacteria
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000000487
subclass of: Restriction
  on property: is genome of organism
  some values from: Neisseria meningitidis
definition: The genome of an organism of Neisseria meningitidis
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 487

genome of Bordetella
type: Class
subclass of: genome of Burkholderiales
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000000517
subclass of: Restriction
  on property: is genome of organism
  some values from: Bordetella
definition: The genome of an organism of Bordetella
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 517

genome of Bordetella pertussis
type: Class
subclass of: genome of Bordetella
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000000520
subclass of: Restriction
  on property: is genome of organism
  some values from: Bordetella pertussis
definition: The genome of an organism of Bordetella pertussis
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 520

genome of Enterobacteriaceae
type: Class
subclass of: genome of Gammaproteobacteria
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000000543
subclass of: Restriction
  on property: is genome of organism
  some values from: Enterobacteriaceae
definition: The genome of an organism of Enterobacteriaceae
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 543

genome of Escherichia coli
type: Class
subclass of: genome of Enterobacteriaceae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000000562
subclass of: Restriction
  on property: is genome of organism
  some values from: Escherichia coli
definition: The genome of an organism of Escherichia coli
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 562

genome of Shigella
type: Class
subclass of: genome of Enterobacteriaceae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000000620
subclass of: Restriction
  on property: is genome of organism
  some values from: Shigella
definition: The genome of an organism of Shigella
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 620

genome of Shigella boydii
type: Class
subclass of: genome of Shigella
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000000621
subclass of: Restriction
  on property: is genome of organism
  some values from: Shigella boydii
definition: The genome of an organism of Shigella boydii
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 621

genome of Shigella flexneri
type: Class
subclass of: genome of Shigella
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000000623
subclass of: Restriction
  on property: is genome of organism
  some values from: Shigella flexneri
definition: The genome of an organism of Shigella flexneri
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 623

genome of Yersinia <bacteria>
type: Class
subclass of: genome of Enterobacteriaceae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000000629
subclass of: Restriction
  on property: is genome of organism
  some values from: Yersinia <bacteria>
definition: The genome of an organism of Yersinia <bacteria>
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 629

genome of Yersinia enterocolitica
type: Class
subclass of: genome of Yersinia <bacteria>
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000000630
subclass of: Restriction
  on property: is genome of organism
  some values from: Yersinia enterocolitica
definition: The genome of an organism of Yersinia enterocolitica
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 630

genome of Yersinia pestis
type: Class
subclass of: genome of Yersinia <bacteria>
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000000632
subclass of: Restriction
  on property: is genome of organism
  some values from: Yersinia pestis
definition: The genome of an organism of Yersinia pestis
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 632

genome of Yersinia pseudotuberculosis
type: Class
subclass of: genome of Yersinia <bacteria>
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000000633
subclass of: Restriction
  on property: is genome of organism
  some values from: Yersinia pseudotuberculosis
definition: The genome of an organism of Yersinia pseudotuberculosis
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 633

genome of Vibrio cholerae
type: Class
subclass of: genome of Gammaproteobacteria
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000000666
subclass of: Restriction
  on property: is genome of organism
  some values from: Vibrio cholerae
definition: The genome of an organism of Vibrio cholerae
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 666

genome of Pasteurellaceae
type: Class
subclass of: genome of Gammaproteobacteria
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000000712
subclass of: Restriction
  on property: is genome of organism
  some values from: Pasteurellaceae
definition: The genome of an organism of Pasteurellaceae
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 712

genome of Actinobacillus pleuropneumoniae
type: Class
subclass of: genome of Pasteurellaceae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000000715
subclass of: Restriction
  on property: is genome of organism
  some values from: Actinobacillus pleuropneumoniae
definition: The genome of an organism of Actinobacillus pleuropneumoniae
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 715

genome of Haemophilus influenzae
type: Class
subclass of: genome of Pasteurellaceae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000000727
subclass of: Restriction
  on property: is genome of organism
  some values from: Haemophilus influenzae
definition: The genome of an organism of Haemophilus influenzae
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 727

genome of Pasteurella multocida
type: Class
subclass of: genome of Pasteurellaceae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000000747
subclass of: Restriction
  on property: is genome of organism
  some values from: Pasteurella multocida
definition: The genome of an organism of Pasteurella multocida
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 747

genome of Bartonella
type: Class
subclass of: genome of Rhizobiales
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000000773
subclass of: Restriction
  on property: is genome of organism
  some values from: Bartonella
definition: The genome of an organism of Bartonella
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 773

genome of Chlamydia
type: Class
subclass of: genome of Bacteria
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000000810
subclass of: Restriction
  on property: is genome of organism
  some values from: Chlamydia
definition: The genome of an organism of Chlamydia
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 810

genome of Proteobacteria
type: Class
subclass of: genome of Bacteria
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000001224
subclass of: Restriction
  on property: is genome of organism
  some values from: Proteobacteria
definition: The genome of an organism of Proteobacteria
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 1224

genome of Gammaproteobacteria
type: Class
subclass of: genome of Proteobacteria
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000001236
subclass of: Restriction
  on property: is genome of organism
  some values from: Gammaproteobacteria
definition: The genome of an organism of Gammaproteobacteria
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 1236

genome of Firmicutes
type: Class
subclass of: genome of Bacteria
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000001239
subclass of: Restriction
  on property: is genome of organism
  some values from: Firmicutes
definition: The genome of an organism of Firmicutes
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 1239

genome of Staphylococcus aureus
type: Class
subclass of: genome of Bacillales
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000001280
subclass of: Restriction
  on property: is genome of organism
  some values from: Staphylococcus aureus
definition: The genome of an organism of Staphylococcus aureus
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 1280

genome of Streptococcus
type: Class
subclass of: genome of Lactobacillales
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000001301
subclass of: Restriction
  on property: is genome of organism
  some values from: Streptococcus
definition: The genome of an organism of Streptococcus
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 1301

genome of Streptococcus agalactiae
type: Class
subclass of: genome of Streptococcus
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000001311
subclass of: Restriction
  on property: is genome of organism
  some values from: Streptococcus agalactiae
definition: The genome of an organism of Streptococcus agalactiae
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 1311

genome of Streptococcus pneumoniae
type: Class
subclass of: genome of Streptococcus
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000001313
subclass of: Restriction
  on property: is genome of organism
  some values from: Streptococcus pneumoniae
definition: The genome of an organism of Streptococcus pneumoniae
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 1313

genome of Streptococcus pyogenes
type: Class
subclass of: genome of Streptococcus
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000001314
subclass of: Restriction
  on property: is genome of organism
  some values from: Streptococcus pyogenes
definition: The genome of an organism of Streptococcus pyogenes
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 1314

genome of Enterococcus
type: Class
subclass of: genome of Lactobacillales
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000001350
subclass of: Restriction
  on property: is genome of organism
  some values from: Enterococcus
definition: The genome of an organism of Enterococcus
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 1350

genome of Enterococcus faecalis
type: Class
subclass of: genome of Enterococcus
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000001351
subclass of: Restriction
  on property: is genome of organism
  some values from: Enterococcus faecalis
definition: The genome of an organism of Enterococcus faecalis
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 1351

genome of Enterococcus faecium
type: Class
subclass of: genome of Enterococcus
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000001352
subclass of: Restriction
  on property: is genome of organism
  some values from: Enterococcus faecium
definition: The genome of an organism of Enterococcus faecium
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 1352

genome of Bacillales
type: Class
subclass of: genome of Bacilli
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000001385
subclass of: Restriction
  on property: is genome of organism
  some values from: Bacillales
definition: The genome of an organism of Bacillales
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 1385

genome of Bacillus anthracis
type: Class
subclass of: genome of Bacillales
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000001392
subclass of: Restriction
  on property: is genome of organism
  some values from: Bacillus anthracis
definition: The genome of an organism of Bacillus anthracis
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 1392

genome of Clostridium
type: Class
subclass of: genome of Clostridiales
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000001485
subclass of: Restriction
  on property: is genome of organism
  some values from: Clostridium
definition: The genome of an organism of Clostridium
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 1485

genome of Clostridium botulinum
type: Class
subclass of: genome of Clostridium
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000001491
subclass of: Restriction
  on property: is genome of organism
  some values from: Clostridium botulinum
definition: The genome of an organism of Clostridium botulinum
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 1491

genome of [Clostridium] difficile
type: Class
subclass of: genome of Clostridiales
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000001496
subclass of: Restriction
  on property: is genome of organism
  some values from: Clostridioides difficile
definition: The genome of an organism of [Clostridium] difficile
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 1496

genome of Clostridium perfringens
type: Class
subclass of: genome of Clostridium
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000001502
subclass of: Restriction
  on property: is genome of organism
  some values from: Clostridium perfringens
definition: The genome of an organism of Clostridium perfringens
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 1502

genome of Listeria monocytogenes
type: Class
subclass of: genome of Bacillales
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000001639
subclass of: Restriction
  on property: is genome of organism
  some values from: Listeria monocytogenes
definition: The genome of an organism of Listeria monocytogenes
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 1639

genome of Mycobacterium
type: Class
subclass of: genome of Corynebacterineae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000001763
subclass of: Restriction
  on property: is genome of organism
  some values from: Mycobacterium
definition: The genome of an organism of Mycobacterium
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 1763

genome of Mycobacterium tuberculosis
type: Class
subclass of: genome of Mycobacterium
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000001773
subclass of: Restriction
  on property: is genome of organism
  some values from: Mycobacterium tuberculosis
definition: The genome of an organism of Mycobacterium tuberculosis
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 1773

genome of Eukaryota
type: Class
subclass of: genome
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000002759
subclass of: Restriction
  on property: is genome of organism
  some values from: Eukaryota
definition: The genome of an organism of Eukaryota
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 2759

genome of Saccharomycetales
type: Class
subclass of: genome of saccharomyceta
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000004892
subclass of: Restriction
  on property: is genome of organism
  some values from: Saccharomycetales
definition: The genome of an organism of Saccharomycetales
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 4892

genome of Saccharomycetaceae
type: Class
subclass of: genome of Saccharomycetales
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000004893
subclass of: Restriction
  on property: is genome of organism
  some values from: Saccharomycetaceae
definition: The genome of an organism of Saccharomycetaceae
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 4893

genome of Saccharomyces cerevisiae
type: Class
subclass of: genome of Saccharomycetaceae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000004932
subclass of: Restriction
  on property: is genome of organism
  some values from: Saccharomyces cerevisiae
definition: The genome of an organism of Saccharomyces cerevisiae
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 4932

genome of Ajellomyces capsulatus
type: Class
subclass of: genome of Onygenales
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000005037
subclass of: Restriction
  on property: is genome of organism
  some values from: Ajellomyces capsulatus
definition: The genome of an organism of Ajellomyces capsulatus
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 5037

genome of Cryptococcus neoformans
type: Class
subclass of: genome of Filobasidiella/Cryptococcus neoformans species complex
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000005207
subclass of: Restriction
  on property: is genome of organism
  some values from: Cryptococcus neoformans
definition: The genome of an organism of Cryptococcus neoformans
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 5207

genome of Candida
type: Class
subclass of: genome of Saccharomycetales
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000005475
subclass of: Restriction
  on property: is genome of organism
  some values from: Candida
definition: The genome of an organism of Candida
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 5475

genome of Candida albicans
type: Class
subclass of: genome of Candida
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000005476
subclass of: Restriction
  on property: is genome of organism
  some values from: Candida albicans
definition: The genome of an organism of Candida albicans
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 5476

genome of Candida glabrata
type: Class
subclass of: genome of Saccharomycetaceae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000005478
subclass of: Restriction
  on property: is genome of organism
  some values from: Candida glabrata
definition: The genome of an organism of Candida glabrata
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 5478

genome of Trypanosomatidae
type: Class
subclass of: genome of Eukaryota
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000005654
subclass of: Restriction
  on property: is genome of organism
  some values from: Trypanosomatidae
definition: The genome of an organism of Trypanosomatidae
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 5654

genome of Leishmania donovani
type: Class
subclass of: genome of Leishmania donovani species complex
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000005661
subclass of: Restriction
  on property: is genome of organism
  some values from: Leishmania donovani
definition: The genome of an organism of Leishmania donovani
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 5661

genome of Leishmania major
type: Class
subclass of: genome of Leishmania <subgenus>
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000005664
subclass of: Restriction
  on property: is genome of organism
  some values from: Leishmania major
definition: The genome of an organism of Leishmania major
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 5664

genome of Leishmania mexicana
type: Class
subclass of: genome of Leishmania <subgenus>
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000005665
subclass of: Restriction
  on property: is genome of organism
  some values from: Leishmania mexicana
definition: The genome of an organism of Leishmania mexicana
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 5665

genome of Leishmania infantum
type: Class
subclass of: genome of Leishmania donovani species complex
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000005671
subclass of: Restriction
  on property: is genome of organism
  some values from: Leishmania infantum
definition: The genome of an organism of Leishmania infantum
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 5671

genome of Trypanosoma
type: Class
subclass of: genome of Trypanosomatidae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000005690
subclass of: Restriction
  on property: is genome of organism
  some values from: Trypanosoma
definition: The genome of an organism of Trypanosoma
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 5690

genome of Trypanosoma cruzi
type: Class
subclass of: genome of Trypanosoma
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000005693
subclass of: Restriction
  on property: is genome of organism
  some values from: Trypanosoma cruzi
definition: The genome of an organism of Trypanosoma cruzi
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 5693

genome of Entamoeba histolytica
type: Class
subclass of: genome of Eukaryota
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000005759
subclass of: Restriction
  on property: is genome of organism
  some values from: Entamoeba histolytica
definition: The genome of an organism of Entamoeba histolytica
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 5759

genome of Apicomplexa
type: Class
subclass of: genome of Eukaryota
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000005794
subclass of: Restriction
  on property: is genome of organism
  some values from: Apicomplexa
definition: The genome of an organism of Apicomplexa
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 5794

genome of Toxoplasma gondii
type: Class
subclass of: genome of Eimeriorina
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000005811
subclass of: Restriction
  on property: is genome of organism
  some values from: Toxoplasma gondii
definition: The genome of an organism of Toxoplasma gondii
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 5811

genome of Plasmodium
type: Class
subclass of: genome of Apicomplexa
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000005820
subclass of: Restriction
  on property: is genome of organism
  some values from: Plasmodium
definition: The genome of an organism of Plasmodium
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 5820

genome of Plasmodium berghei ANKA
type: Class
subclass of: genome of Plasmodium (Vinckeia)
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000005823
subclass of: Restriction
  on property: is genome of organism
  some values from: Plasmodium berghei ANKA
definition: The genome of an organism of Plasmodium berghei ANKA
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 5823

genome of Plasmodium yoelii
type: Class
subclass of: genome of Plasmodium (Vinckeia)
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000005861
subclass of: Restriction
  on property: is genome of organism
  some values from: Plasmodium yoelii
definition: The genome of an organism of Plasmodium yoelii
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 5861

genome of Exophiala dermatitidis
type: Class
subclass of: genome of Eurotiomycetes
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000005970
subclass of: Restriction
  on property: is genome of organism
  some values from: Exophiala dermatitidis
definition: The genome of an organism of Exophiala dermatitidis
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 5970

genome of Lythrurus
type: Class
subclass of: genome of Bilateria
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000007966
subclass of: Restriction
  on property: is genome of organism
  some values from: Lythrurus
definition: The genome of an organism of Lythrurus
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 7966

genome of Viruses
type: Class
subclass of: genome
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000010239
subclass of: Restriction
  on property: is genome of organism
  some values from: Viruses
definition: The genome of an organism of Viruses
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 10239

genome of Chordopoxvirinae
type: Class
subclass of: genome of dsDNA viruses, no RNA stage
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000010241
subclass of: Restriction
  on property: is genome of organism
  some values from: Chordopoxvirinae
definition: The genome of an organism of Chordopoxvirinae
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 10241

genome of Orthopoxvirus
type: Class
subclass of: genome of Chordopoxvirinae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000010242
subclass of: Restriction
  on property: is genome of organism
  some values from: Orthopoxvirus
definition: The genome of an organism of Orthopoxvirus
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 10242

genome of Cowpox virus
type: Class
subclass of: genome of Orthopoxvirus
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000010243
subclass of: Restriction
  on property: is genome of organism
  some values from: Cowpox virus
definition: The genome of an organism of Cowpox virus
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 10243

genome of Vaccinia virus
type: Class
subclass of: genome of Orthopoxvirus
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000010245
subclass of: Restriction
  on property: is genome of organism
  some values from: Vaccinia virus
definition: The genome of an organism of Vaccinia virus
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 10245

genome of Vaccinia virus Tian Tan
type: Class
subclass of: genome of Vaccinia virus
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000010253
subclass of: Restriction
  on property: is genome of organism
  some values from: Vaccinia virus Tian Tan
definition: The genome of an organism of Vaccinia virus Tian Tan
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 10253

genome of Vaccinia virus WR
type: Class
subclass of: genome of Vaccinia virus
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000010254
subclass of: Restriction
  on property: is genome of organism
  some values from: Vaccinia virus WR
definition: The genome of an organism of Vaccinia virus WR
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 10254

genome of Orf virus
type: Class
subclass of: genome of Chordopoxvirinae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000010258
subclass of: Restriction
  on property: is genome of organism
  some values from: Orf virus
definition: The genome of an organism of Orf virus
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 10258

genome of Sheeppox virus
type: Class
subclass of: genome of Chordopoxvirinae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000010266
subclass of: Restriction
  on property: is genome of organism
  some values from: Sheeppox virus
definition: The genome of an organism of Sheeppox virus
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 10266

genome of Leporipoxvirus
type: Class
subclass of: genome of Chordopoxvirinae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000010270
subclass of: Restriction
  on property: is genome of organism
  some values from: Leporipoxvirus
definition: The genome of an organism of Leporipoxvirus
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 10270

genome of Rabbit fibroma virus
type: Class
subclass of: genome of Leporipoxvirus
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000010271
subclass of: Restriction
  on property: is genome of organism
  some values from: Rabbit fibroma virus
definition: The genome of an organism of Rabbit fibroma virus
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 10271

genome of Myxoma virus
type: Class
subclass of: genome of Leporipoxvirus
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000010273
subclass of: Restriction
  on property: is genome of organism
  some values from: Myxoma virus
definition: The genome of an organism of Myxoma virus
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 10273

genome of Herpesviridae
type: Class
subclass of: genome of dsDNA viruses, no RNA stage
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000010292
subclass of: Restriction
  on property: is genome of organism
  some values from: Herpesviridae
definition: The genome of an organism of Herpesviridae
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 10292

genome of Alphaherpesvirinae
type: Class
subclass of: genome of Herpesviridae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000010293
subclass of: Restriction
  on property: is genome of organism
  some values from: Alphaherpesvirinae
definition: The genome of an organism of Alphaherpesvirinae
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 10293

genome of Simplexvirus
type: Class
subclass of: genome of Alphaherpesvirinae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000010294
subclass of: Restriction
  on property: is genome of organism
  some values from: Simplexvirus
definition: The genome of an organism of Simplexvirus
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 10294

genome of Human herpesvirus 1
type: Class
subclass of: genome of Simplexvirus
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000010298
subclass of: Restriction
  on property: is genome of organism
  some values from: Human alphaherpesvirus 1
definition: The genome of an organism of Human herpesvirus 1
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 10298

genome of Herpes simplex virus (type 1 / strain 17)
type: Class
subclass of: genome of Human herpesvirus 1
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000010299
subclass of: Restriction
  on property: is genome of organism
  some values from: Herpes simplex virus (type 1 / strain 17)
definition: The genome of an organism of Herpes simplex virus (type 1 / strain 17)
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 10299

genome of Human herpesvirus 2
type: Class
subclass of: genome of Simplexvirus
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000010310
subclass of: Restriction
  on property: is genome of organism
  some values from: Human herpesvirus 2
definition: The genome of an organism of Human herpesvirus 2
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 10310

genome of Varicellovirus
type: Class
subclass of: genome of Alphaherpesvirinae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000010319
subclass of: Restriction
  on property: is genome of organism
  some values from: Varicellovirus
definition: The genome of an organism of Varicellovirus
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 10319

genome of Bovine herpesvirus 1
type: Class
subclass of: genome of Varicellovirus
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000010320
subclass of: Restriction
  on property: is genome of organism
  some values from: Bovine alphaherpesvirus 1
definition: The genome of an organism of Bovine herpesvirus 1
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 10320

genome of Equid herpesvirus 1
type: Class
subclass of: genome of Varicellovirus
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000010326
subclass of: Restriction
  on property: is genome of organism
  some values from: Equid alphaherpesvirus 1
definition: The genome of an organism of Equid herpesvirus 1
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 10326

genome of Felid herpesvirus 1
type: Class
subclass of: genome of Varicellovirus
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000010334
subclass of: Restriction
  on property: is genome of organism
  some values from: Felid alphaherpesvirus 1
definition: The genome of an organism of Felid herpesvirus 1
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 10334

genome of Human herpesvirus 3
type: Class
subclass of: genome of Varicellovirus
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000010335
subclass of: Restriction
  on property: is genome of organism
  some values from: Human herpesvirus 3
definition: The genome of an organism of Human herpesvirus 3
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 10335

genome of Suid herpesvirus 1
type: Class
subclass of: genome of Varicellovirus
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000010345
subclass of: Restriction
  on property: is genome of organism
  some values from: Suid alphaherpesvirus 1
definition: The genome of an organism of Suid herpesvirus 1
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 10345

genome of Gallid herpesvirus 1
type: Class
subclass of: genome of Alphaherpesvirinae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000010386
subclass of: Restriction
  on property: is genome of organism
  some values from: Gallid alphaherpesvirus 1
definition: The genome of an organism of Gallid herpesvirus 1
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 10386

genome of Gallid herpesvirus 2
type: Class
subclass of: genome of Alphaherpesvirinae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000010390
subclass of: Restriction
  on property: is genome of organism
  some values from: Gallid herpesvirus 2
definition: The genome of an organism of Gallid herpesvirus 2
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 10390

genome of African swine fever virus
type: Class
subclass of: genome of dsDNA viruses, no RNA stage
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000010497
subclass of: Restriction
  on property: is genome of organism
  some values from: African swine fever virus
definition: The genome of an organism of African swine fever virus
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 10497

genome of Rotavirus
type: Class
subclass of: genome of Viruses
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000010912
subclass of: Restriction
  on property: is genome of organism
  some values from: Rotavirus
definition: The genome of an organism of Rotavirus
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 10912

genome of Alphavirus
type: Class
subclass of: genome of ssRNA positive-strand viruses, no DNA stage
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000011019
subclass of: Restriction
  on property: is genome of organism
  some values from: Alphavirus
definition: The genome of an organism of Alphavirus
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 11019

genome of Ross River virus
type: Class
subclass of: genome of Alphavirus
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000011029
subclass of: Restriction
  on property: is genome of organism
  some values from: Ross River virus
definition: The genome of an organism of Ross River virus
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 11029

genome of Sindbis virus
type: Class
subclass of: genome of WEEV complex
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000011034
subclass of: Restriction
  on property: is genome of organism
  some values from: Sindbis virus
definition: The genome of an organism of Sindbis virus
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 11034

genome of Venezuelan equine encephalitis virus
type: Class
subclass of: genome of Alphavirus
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000011036
subclass of: Restriction
  on property: is genome of organism
  some values from: Venezuelan equine encephalitis virus
definition: The genome of an organism of Venezuelan equine encephalitis virus
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 11036

genome of Western equine encephalomyelitis virus
type: Class
subclass of: genome of WEEV complex
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000011039
subclass of: Restriction
  on property: is genome of organism
  some values from: Western equine encephalitis virus
definition: The genome of an organism of Western equine encephalomyelitis virus
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 11039

genome of Flaviviridae
type: Class
subclass of: genome of ssRNA positive-strand viruses, no DNA stage
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000011050
subclass of: Restriction
  on property: is genome of organism
  some values from: Flaviviridae
definition: The genome of an organism of Flaviviridae
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 11050

genome of Flavivirus
type: Class
subclass of: genome of Flaviviridae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000011051
subclass of: Restriction
  on property: is genome of organism
  some values from: Flavivirus
definition: The genome of an organism of Flavivirus
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 11051

genome of West Nile virus
type: Class
subclass of: genome of Flavivirus
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000011082
subclass of: Restriction
  on property: is genome of organism
  some values from: West Nile virus
definition: The genome of an organism of West Nile virus
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 11082

genome of Tick-borne encephalitis virus
type: Class
subclass of: genome of Flavivirus
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000011084
subclass of: Restriction
  on property: is genome of organism
  some values from: Tick-borne encephalitis virus
definition: The genome of an organism of Tick-borne encephalitis virus
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 11084

genome of Yellow fever virus
type: Class
subclass of: genome of Flavivirus
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000011089
subclass of: Restriction
  on property: is genome of organism
  some values from: Yellow fever virus
definition: The genome of an organism of Yellow fever virus
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 11089

genome of Classical swine fever virus
type: Class
subclass of: genome of Flaviviridae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000011096
subclass of: Restriction
  on property: is genome of organism
  some values from: Classical swine fever virus
definition: The genome of an organism of Classical swine fever virus
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 11096

genome of Classical swine fever virus - Brescia
type: Class
subclass of: genome of Classical swine fever virus
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000011098
subclass of: Restriction
  on property: is genome of organism
  some values from: Classical swine fever virus - Brescia
definition: The genome of an organism of Classical swine fever virus - Brescia
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 11098

genome of Feline infectious peritonitis virus
type: Class
subclass of: genome of Alphacoronavirus 1
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000011135
subclass of: Restriction
  on property: is genome of organism
  some values from: Feline infectious peritonitis virus
definition: The genome of an organism of Feline infectious peritonitis virus
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 11135

genome of Porcine respiratory coronavirus
type: Class
subclass of: genome of Alphacoronavirus 1
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000011146
subclass of: Restriction
  on property: is genome of organism
  some values from: Porcine respiratory coronavirus
definition: The genome of an organism of Porcine respiratory coronavirus
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 11146

genome of Mononegavirales
type: Class
subclass of: genome of ssRNA negative-strand viruses
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000011157
subclass of: Restriction
  on property: is genome of organism
  some values from: Mononegavirales
definition: The genome of an organism of Mononegavirales
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 11157

genome of Paramyxoviridae
type: Class
subclass of: genome of Mononegavirales
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000011158
subclass of: Restriction
  on property: is genome of organism
  some values from: Paramyxoviridae
definition: The genome of an organism of Paramyxoviridae
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 11158

genome of Paramyxovirinae
type: Class
subclass of: genome of Paramyxoviridae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000011159
subclass of: Restriction
  on property: is genome of organism
  some values from: Paramyxovirinae
definition: The genome of an organism of Paramyxovirinae
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 11159

genome of Newcastle disease virus
type: Class
subclass of: genome of Paramyxovirinae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000011176
subclass of: Restriction
  on property: is genome of organism
  some values from: Newcastle disease virus
definition: The genome of an organism of Newcastle disease virus
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 11176

genome of Human parainfluenza virus 3
type: Class
subclass of: genome of Paramyxovirinae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000011216
subclass of: Restriction
  on property: is genome of organism
  some values from: Human parainfluenza virus 3
definition: The genome of an organism of Human parainfluenza virus 3
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 11216

genome of Measles virus
type: Class
subclass of: genome of Paramyxovirinae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000011234
subclass of: Restriction
  on property: is genome of organism
  some values from: Measles morbillivirus
definition: The genome of an organism of Measles virus
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 11234

genome of Pneumovirinae
type: Class
subclass of: genome of Paramyxoviridae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000011244
subclass of: Restriction
  on property: is genome of organism
  some values from: Pneumoviridae
definition: The genome of an organism of Pneumovirinae
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 11244

genome of Pneumovirus
type: Class
subclass of: genome of Pneumovirinae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000011245
subclass of: Restriction
  on property: is genome of organism
  some values from: Pneumovirus
definition: The genome of an organism of Pneumovirus
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 11245

genome of Bovine respiratory syncytial virus
type: Class
subclass of: genome of Pneumovirus
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000011246
subclass of: Restriction
  on property: is genome of organism
  some values from: Bovine orthopneumovirus
definition: The genome of an organism of Bovine respiratory syncytial virus
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 11246

genome of Human respiratory syncytial virus A2
type: Class
subclass of: genome of Pneumovirus
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000011259
subclass of: Restriction
  on property: is genome of organism
  some values from: Human respiratory syncytial virus A2
definition: The genome of an organism of Human respiratory syncytial virus A2
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 11259

genome of Rhabdoviridae
type: Class
subclass of: genome of Mononegavirales
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000011270
subclass of: Restriction
  on property: is genome of organism
  some values from: Rhabdoviridae
definition: The genome of an organism of Rhabdoviridae
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 11270

genome of Infectious hematopoietic necrosis virus
type: Class
subclass of: genome of Rhabdoviridae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000011290
subclass of: Restriction
  on property: is genome of organism
  some values from: Infectious hematopoietic necrosis virus
definition: The genome of an organism of Infectious hematopoietic necrosis virus
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 11290

genome of Rabies virus
type: Class
subclass of: genome of Rhabdoviridae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000011292
subclass of: Restriction
  on property: is genome of organism
  some values from: Rabies lyssavirus
definition: The genome of an organism of Rabies virus
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 11292

genome of Influenza A virus
type: Class
subclass of: genome of ssRNA negative-strand viruses
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000011320
subclass of: Restriction
  on property: is genome of organism
  some values from: Influenza A virus
definition: The genome of an organism of Influenza A virus
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 11320

genome of Bunyaviridae
type: Class
subclass of: genome of ssRNA negative-strand viruses
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000011571
subclass of: Restriction
  on property: is genome of organism
  some values from: Bunyaviridae
definition: The genome of an organism of Bunyaviridae
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 11571

genome of La Crosse virus
type: Class
subclass of: genome of Bunyaviridae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000011577
subclass of: Restriction
  on property: is genome of organism
  some values from: La Crosse virus
definition: The genome of an organism of La Crosse virus
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 11577

genome of Rift Valley fever virus
type: Class
subclass of: genome of Bunyaviridae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000011588
subclass of: Restriction
  on property: is genome of organism
  some values from: Rift Valley fever virus
definition: The genome of an organism of Rift Valley fever virus
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 11588

genome of Hantaan virus
type: Class
subclass of: genome of Bunyaviridae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000011599
subclass of: Restriction
  on property: is genome of organism
  some values from: Hantaan virus
definition: The genome of an organism of Hantaan virus
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 11599

genome of Lentivirus
type: Class
subclass of: genome of Viruses
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000011646
subclass of: Restriction
  on property: is genome of organism
  some values from: Lentivirus
definition: The genome of an organism of Lentivirus
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 11646

genome of Primate lentivirus group
type: Class
subclass of: genome of Lentivirus
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000011652
subclass of: Restriction
  on property: is genome of organism
  some values from: Primate lentivirus group
definition: The genome of an organism of Primate lentivirus group
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 11652

genome of Feline immunodeficiency virus
type: Class
subclass of: genome of Lentivirus
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000011673
subclass of: Restriction
  on property: is genome of organism
  some values from: Feline immunodeficiency virus
definition: The genome of an organism of Feline immunodeficiency virus
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 11673

genome of Human immunodeficiency virus 1
type: Class
subclass of: genome of Primate lentivirus group
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000011676
subclass of: Restriction
  on property: is genome of organism
  some values from: Human immunodeficiency virus 1
definition: The genome of an organism of Human immunodeficiency virus 1
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 11676

genome of Simian immunodeficiency virus
type: Class
subclass of: genome of Primate lentivirus group
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000011723
subclass of: Restriction
  on property: is genome of organism
  some values from: Simian immunodeficiency virus
definition: The genome of an organism of Simian immunodeficiency virus
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 11723

genome of Encephalomyocarditis virus
type: Class
subclass of: genome of ssRNA positive-strand viruses, no DNA stage
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000012104
subclass of: Restriction
  on property: is genome of organism
  some values from: Encephalomyocarditis virus
definition: The genome of an organism of Encephalomyocarditis virus
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 12104

genome of Chicken anemia virus
type: Class
subclass of: genome of Circoviridae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000012618
subclass of: Restriction
  on property: is genome of organism
  some values from: Chicken anemia virus
definition: The genome of an organism of Chicken anemia virus
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 12618

genome of Ectromelia virus
type: Class
subclass of: genome of Orthopoxvirus
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000012643
subclass of: Restriction
  on property: is genome of organism
  some values from: Ectromelia virus
definition: The genome of an organism of Ectromelia virus
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 12643

genome of Burkholderia mallei
type: Class
subclass of: genome of pseudomallei group
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000013373
subclass of: Restriction
  on property: is genome of organism
  some values from: Burkholderia mallei
definition: The genome of an organism of Burkholderia mallei
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 13373

genome of Alphaproteobacteria
type: Class
subclass of: genome of Proteobacteria
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000028211
subclass of: Restriction
  on property: is genome of organism
  some values from: Alphaproteobacteria
definition: The genome of an organism of Alphaproteobacteria
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 28211

genome of Betaproteobacteria
type: Class
subclass of: genome of Proteobacteria
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000028216
subclass of: Restriction
  on property: is genome of organism
  some values from: Betaproteobacteria
definition: The genome of an organism of Betaproteobacteria
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 28216

genome of Porcine reproductive and respiratory syndrome virus
type: Class
subclass of: genome of Nidovirales
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000028344
subclass of: Restriction
  on property: is genome of organism
  some values from: Porcine reproductive and respiratory syndrome virus
definition: The genome of an organism of Porcine reproductive and respiratory syndrome virus
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 28344

genome of Burkholderia pseudomallei
type: Class
subclass of: genome of pseudomallei group
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000028450
subclass of: Restriction
  on property: is genome of organism
  some values from: Burkholderia pseudomallei
definition: The genome of an organism of Burkholderia pseudomallei
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 28450

genome of Trichocomaceae
type: Class
subclass of: genome of Eurotiomycetidae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000028568
subclass of: Restriction
  on property: is genome of organism
  some values from: Trichocomaceae
definition: The genome of an organism of Trichocomaceae
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 28568

genome of Rotavirus A
type: Class
subclass of: genome of Rotavirus
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000028875
subclass of: Restriction
  on property: is genome of organism
  some values from: Rotavirus A
definition: The genome of an organism of Rotavirus A
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 28875

genome of Brucella melitensis
type: Class
subclass of: genome of Brucella
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000029459
subclass of: Restriction
  on property: is genome of organism
  some values from: Brucella melitensis
definition: The genome of an organism of Brucella melitensis
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 29459

genome of Yersinia ruckeri
type: Class
subclass of: genome of Yersinia <bacteria>
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000029486
subclass of: Restriction
  on property: is genome of organism
  some values from: Yersinia ruckeri
definition: The genome of an organism of Yersinia ruckeri
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 29486

genome of Campylobacter jejuni subsp. jejuni
type: Class
subclass of: genome of Campylobacter jejuni
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000032022
subclass of: Restriction
  on property: is genome of organism
  some values from: Campylobacter jejuni subsp. jejuni
definition: The genome of an organism of Campylobacter jejuni subsp. jejuni
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 32022

genome of Opisthokonta
type: Class
subclass of: genome of Eukaryota
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000033154
subclass of: Restriction
  on property: is genome of organism
  some values from: Opisthokonta
definition: The genome of an organism of Opisthokonta
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 33154

genome of Onygenales
type: Class
subclass of: genome of Eurotiomycetidae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000033183
subclass of: Restriction
  on property: is genome of organism
  some values from: Onygenales
definition: The genome of an organism of Onygenales
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 33183

genome of Bilateria
type: Class
subclass of: genome of Opisthokonta
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000033213
subclass of: Restriction
  on property: is genome of organism
  some values from: Bilateria
definition: The genome of an organism of Bilateria
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 33213

genome of Suid herpesvirus 1 strain Kaplan
type: Class
subclass of: genome of Suid herpesvirus 1
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000033703
subclass of: Restriction
  on property: is genome of organism
  some values from: Suid herpesvirus 1 strain Kaplan
definition: The genome of an organism of Suid herpesvirus 1 strain Kaplan
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 33703

genome of Actinobacillus pleuropneumoniae serovar 2
type: Class
subclass of: genome of Actinobacillus pleuropneumoniae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000034063
subclass of: Restriction
  on property: is genome of organism
  some values from: Actinobacillus pleuropneumoniae serovar 2
definition: The genome of an organism of Actinobacillus pleuropneumoniae serovar 2
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 34063

genome of dsDNA viruses, no RNA stage
type: Class
subclass of: genome of Viruses
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000035237
subclass of: Restriction
  on property: is genome of organism
  some values from: dsDNA viruses, no RNA stage
definition: The genome of an organism of dsDNA viruses, no RNA stage
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 35237

genome of Bovine herpesvirus 5
type: Class
subclass of: genome of Varicellovirus
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000035244
subclass of: Restriction
  on property: is genome of organism
  some values from: Bovine herpesvirus 5
definition: The genome of an organism of Bovine herpesvirus 5
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 35244

genome of ssRNA positive-strand viruses, no DNA stage
type: Class
subclass of: genome of ssRNA viruses
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000035278
subclass of: Restriction
  on property: is genome of organism
  some values from: ssRNA positive-strand viruses, no DNA stage
definition: The genome of an organism of ssRNA positive-strand viruses, no DNA stage
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 35278

genome of ssRNA negative-strand viruses
type: Class
subclass of: genome of ssRNA viruses
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000035301
subclass of: Restriction
  on property: is genome of organism
  some values from: ssRNA negative-strand viruses
definition: The genome of an organism of ssRNA negative-strand viruses
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 35301

genome of Dictyochales
type: Class
subclass of: genome of Eukaryota
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000035685
subclass of: Restriction
  on property: is genome of organism
  some values from: Dictyochales
definition: The genome of an organism of Dictyochales
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 35685

genome of Plasmodium falciparum 3D7
type: Class
subclass of: genome of Plasmodium
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000036329
subclass of: Restriction
  on property: is genome of organism
  some values from: Plasmodium falciparum 3D7
definition: The genome of an organism of Plasmodium falciparum 3D7
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 36329

genome of Rotavirus C
type: Class
subclass of: genome of Rotavirus
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000036427
subclass of: Restriction
  on property: is genome of organism
  some values from: Rotavirus C
definition: The genome of an organism of Rotavirus C
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 36427

genome of Clostridium botulinum A
type: Class
subclass of: genome of Clostridium botulinum
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000036826
subclass of: Restriction
  on property: is genome of organism
  some values from: Clostridium botulinum A
definition: The genome of an organism of Clostridium botulinum A
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 36826

genome of Bartonella henselae
type: Class
subclass of: genome of Bartonella
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000038323
subclass of: Restriction
  on property: is genome of organism
  some values from: Bartonella henselae
definition: The genome of an organism of Bartonella henselae
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 38323

genome of Leishmania <subgenus>
type: Class
subclass of: genome of Trypanosomatidae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000038568
subclass of: Restriction
  on property: is genome of organism
  some values from: Leishmania <subgenus>
definition: The genome of an organism of Leishmania <subgenus>
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 38568

genome of Leishmania donovani species complex
type: Class
subclass of: genome of Leishmania <subgenus>
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000038574
subclass of: Restriction
  on property: is genome of organism
  some values from: Leishmania donovani species complex
definition: The genome of an organism of Leishmania donovani species complex
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 38574

genome of Circoviridae
type: Class
subclass of: genome of Viruses
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000039724
subclass of: Restriction
  on property: is genome of organism
  some values from: Circoviridae
definition: The genome of an organism of Circoviridae
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 39724

genome of Cryptococcus neoformans var. neoformans
type: Class
subclass of: genome of Cryptococcus neoformans
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000040410
subclass of: Restriction
  on property: is genome of organism
  some values from: Cryptococcus neoformans var. neoformans
definition: The genome of an organism of Cryptococcus neoformans var. neoformans
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 40410

genome of Candida dubliniensis
type: Class
subclass of: genome of Candida
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000042374
subclass of: Restriction
  on property: is genome of organism
  some values from: Candida dubliniensis
definition: The genome of an organism of Candida dubliniensis
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 42374

genome of Shigella flexneri 2a
type: Class
subclass of: genome of Shigella flexneri
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000042897
subclass of: Restriction
  on property: is genome of organism
  some values from: Shigella flexneri 2a
definition: The genome of an organism of Shigella flexneri 2a
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 42897

genome of Vibrio cholerae O139
type: Class
subclass of: genome of Vibrio cholerae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000045888
subclass of: Restriction
  on property: is genome of organism
  some values from: Vibrio cholerae O139
definition: The genome of an organism of Vibrio cholerae O139
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 45888

genome of Autographa californica nucleopolyhedrovirus
type: Class
subclass of: genome of Alphabaculovirus
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000046015
subclass of: Restriction
  on property: is genome of organism
  some values from: Autographa californica nucleopolyhedrovirus
definition: The genome of an organism of Autographa californica nucleopolyhedrovirus
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 46015

genome of Staphylococcus aureus subsp. aureus
type: Class
subclass of: genome of Staphylococcus aureus
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000046170
subclass of: Restriction
  on property: is genome of organism
  some values from: Staphylococcus aureus subsp. aureus
definition: The genome of an organism of Staphylococcus aureus subsp. aureus
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 46170

genome of Salmonella enterica subsp. enterica
type: Class
subclass of: genome of Enterobacteriaceae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000059201
subclass of: Restriction
  on property: is genome of organism
  some values from: Salmonella enterica subsp. enterica
definition: The genome of an organism of Salmonella enterica subsp. enterica
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 59201

genome of Legionella pneumophila serogroup 1
type: Class
subclass of: genome of Legionella pneumophila
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000066976
subclass of: Restriction
  on property: is genome of organism
  some values from: Legionella pneumophila serogroup 1
definition: The genome of an organism of Legionella pneumophila serogroup 1
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 66976

genome of Murine cytomegalovirus (strain K181)
type: Class
subclass of: genome of Herpesviridae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000069156
subclass of: Restriction
  on property: is genome of organism
  some values from: Murine cytomegalovirus (strain K181)
definition: The genome of an organism of Murine cytomegalovirus (strain K181)
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 69156

genome of Haemophilus influenzae Rd KW20
type: Class
subclass of: genome of Haemophilus influenzae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000071421
subclass of: Restriction
  on property: is genome of organism
  some values from: Haemophilus influenzae Rd KW20
definition: The genome of an organism of Haemophilus influenzae Rd KW20
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 71421

genome of Plasmodium yoelii yoelii
type: Class
subclass of: genome of Plasmodium yoelii
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000073239
subclass of: Restriction
  on property: is genome of organism
  some values from: Plasmodium yoelii yoelii
definition: The genome of an organism of Plasmodium yoelii yoelii
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 73239

genome of Mannheimia haemolytica
type: Class
subclass of: genome of Pasteurellaceae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000075985
subclass of: Restriction
  on property: is genome of organism
  some values from: Mannheimia haemolytica
definition: The genome of an organism of Mannheimia haemolytica
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 75985

genome of Nidovirales
type: Class
subclass of: genome of ssRNA positive-strand viruses, no DNA stage
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000076804
subclass of: Restriction
  on property: is genome of organism
  some values from: Nidovirales
definition: The genome of an organism of Nidovirales
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 76804

genome of Bovine herpesvirus type 1.1
type: Class
subclass of: genome of Bovine herpesvirus 1
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000079889
subclass of: Restriction
  on property: is genome of organism
  some values from: Bovine herpesvirus type 1.1
definition: The genome of an organism of Bovine herpesvirus type 1.1
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 79889

genome of Burkholderiales
type: Class
subclass of: genome of Betaproteobacteria
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000080840
subclass of: Restriction
  on property: is genome of organism
  some values from: Burkholderiales
definition: The genome of an organism of Burkholderiales
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 80840

genome of Mycobacterium tuberculosis CDC1551
type: Class
subclass of: genome of Mycobacterium tuberculosis
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000083331
subclass of: Restriction
  on property: is genome of organism
  some values from: Mycobacterium tuberculosis CDC1551
definition: The genome of an organism of Mycobacterium tuberculosis CDC1551
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 83331

genome of Mycobacterium tuberculosis H37Rv
type: Class
subclass of: genome of Mycobacterium tuberculosis
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000083332
subclass of: Restriction
  on property: is genome of organism
  some values from: Mycobacterium tuberculosis H37Rv
definition: The genome of an organism of Mycobacterium tuberculosis H37Rv
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 83332

genome of Escherichia coli K-12
type: Class
subclass of: genome of Escherichia coli
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000083333
subclass of: Restriction
  on property: is genome of organism
  some values from: Escherichia coli K-12
definition: The genome of an organism of Escherichia coli K-12
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 83333

genome of Escherichia coli O157:H7
type: Class
subclass of: genome of Escherichia coli
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000083334
subclass of: Restriction
  on property: is genome of organism
  some values from: Escherichia coli O157:H7
definition: The genome of an organism of Escherichia coli O157:H7
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 83334

genome of Chlamydia pneumoniae
type: Class
subclass of: genome of Chlamydia
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000083558
subclass of: Restriction
  on property: is genome of organism
  some values from: Chlamydia pneumoniae
definition: The genome of an organism of Chlamydia pneumoniae
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 83558

genome of Corynebacterineae
type: Class
subclass of: genome of Bacteria
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000085007
subclass of: Restriction
  on property: is genome of organism
  some values from: Corynebacteriales
definition: The genome of an organism of Corynebacterineae
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 85007

genome of Porcine circovirus 2
type: Class
subclass of: genome of Circoviridae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000085708
subclass of: Restriction
  on property: is genome of organism
  some values from: Porcine circovirus 2
definition: The genome of an organism of Porcine circovirus 2
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 85708

genome of Helicobacter pylori 26695
type: Class
subclass of: genome of Helicobacter pylori
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000085962
subclass of: Restriction
  on property: is genome of organism
  some values from: Helicobacter pylori 26695
definition: The genome of an organism of Helicobacter pylori 26695
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 85962

genome of Helicobacter pylori J99
type: Class
subclass of: genome of Helicobacter pylori
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000085963
subclass of: Restriction
  on property: is genome of organism
  some values from: Helicobacter pylori J99
definition: The genome of an organism of Helicobacter pylori J99
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 85963

genome of Salmonella enterica subsp. enterica serovar Typhi
type: Class
subclass of: genome of Salmonella enterica subsp. enterica
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000090370
subclass of: Restriction
  on property: is genome of organism
  some values from: Salmonella enterica subsp. enterica serovar Typhi
definition: The genome of an organism of Salmonella enterica subsp. enterica serovar Typhi
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 90370

genome of Salmonella enterica subsp. enterica serovar Typhimurium
type: Class
subclass of: genome of Salmonella enterica subsp. enterica
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000090371
subclass of: Restriction
  on property: is genome of organism
  some values from: Salmonella enterica subsp. enterica serovar Typhimurium
definition: The genome of an organism of Salmonella enterica subsp. enterica serovar Typhimurium
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 90371

genome of Bacilli
type: Class
subclass of: genome of Firmicutes
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000091061
subclass of: Restriction
  on property: is genome of organism
  some values from: Bacilli
definition: The genome of an organism of Bacilli
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 91061

genome of Staphylococcus aureus subsp. aureus NCTC 8325
type: Class
subclass of: genome of Staphylococcus aureus subsp. aureus
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000093061
subclass of: Restriction
  on property: is genome of organism
  some values from: Staphylococcus aureus subsp. aureus NCTC 8325
definition: The genome of an organism of Staphylococcus aureus subsp. aureus NCTC 8325
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 93061

genome of Influenza A virus (A/Goose/Guangdong/1/96(H5N1))
type: Class
subclass of: genome of H5N1 subtype
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000093838
subclass of: Restriction
  on property: is genome of organism
  some values from: Influenza A virus (A/Goose/Guangdong/1/96(H5N1))
definition: The genome of an organism of Influenza A virus (A/Goose/Guangdong/1/96(H5N1))
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 93838

genome of Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
type: Class
subclass of: genome of Salmonella enterica subsp. enterica serovar Typhimurium
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000099287
subclass of: Restriction
  on property: is genome of organism
  some values from: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
definition: The genome of an organism of Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 99287

genome of H5N1 subtype
type: Class
subclass of: genome of Influenza A virus
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000102793
subclass of: Restriction
  on property: is genome of organism
  some values from: H5N1 subtype
definition: The genome of an organism of H5N1 subtype
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 102793

genome of Bartonella birtlesii
type: Class
subclass of: genome of Bartonella
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000111504
subclass of: Restriction
  on property: is genome of organism
  some values from: Bartonella birtlesii
definition: The genome of an organism of Bartonella birtlesii
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 111504

genome of pseudomallei group
type: Class
subclass of: genome of Burkholderiales
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000111527
subclass of: Restriction
  on property: is genome of organism
  some values from: pseudomallei group
definition: The genome of an organism of pseudomallei group
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 111527

genome of Chlamydophila pneumoniae CWL029
type: Class
subclass of: genome of Chlamydia pneumoniae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000115713
subclass of: Restriction
  on property: is genome of organism
  some values from: Chlamydophila pneumoniae CWL029
definition: The genome of an organism of Chlamydophila pneumoniae CWL029
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 115713

genome of Legionellales
type: Class
subclass of: genome of Gammaproteobacteria
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000118969
subclass of: Restriction
  on property: is genome of organism
  some values from: Legionellales
definition: The genome of an organism of Legionellales
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 118969

genome of Francisella tularensis subsp. holarctica
type: Class
subclass of: genome of Francisella tularensis
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000119857
subclass of: Restriction
  on property: is genome of organism
  some values from: Francisella tularensis subsp. holarctica
definition: The genome of an organism of Francisella tularensis subsp. holarctica
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 119857

genome of Nipah virus
type: Class
subclass of: genome of Paramyxovirinae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000121791
subclass of: Restriction
  on property: is genome of organism
  some values from: Nipah henipavirus
definition: The genome of an organism of Nipah virus
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 121791

genome of Neisseria meningitidis MC58
type: Class
subclass of: genome of Neisseria meningitidis
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000122586
subclass of: Restriction
  on property: is genome of organism
  some values from: Neisseria meningitidis MC58
definition: The genome of an organism of Neisseria meningitidis MC58
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 122586

genome of Neisseria meningitidis Z2491
type: Class
subclass of: genome of Neisseria meningitidis
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000122587
subclass of: Restriction
  on property: is genome of organism
  some values from: Neisseria meningitidis Z2491
definition: The genome of an organism of Neisseria meningitidis Z2491
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 122587

genome of Neisseria meningitidis serogroup C
type: Class
subclass of: genome of Neisseria meningitidis
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000135720
subclass of: Restriction
  on property: is genome of organism
  some values from: Neisseria meningitidis serogroup C
definition: The genome of an organism of Neisseria meningitidis serogroup C
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 135720

genome of Chlamydophila pneumoniae J138
type: Class
subclass of: genome of Chlamydia pneumoniae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000138677
subclass of: Restriction
  on property: is genome of organism
  some values from: Chlamydophila pneumoniae J138
definition: The genome of an organism of Chlamydophila pneumoniae J138
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 138677

genome of Eurotiomycetes
type: Class
subclass of: genome of saccharomyceta
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000147545
subclass of: Restriction
  on property: is genome of organism
  some values from: Eurotiomycetes
definition: The genome of an organism of Eurotiomycetes
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 147545

genome of Escherichia coli O157:H7 str. EDL933
type: Class
subclass of: genome of Escherichia coli O157:H7
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000155864
subclass of: Restriction
  on property: is genome of organism
  some values from: Escherichia coli O157:H7 str. EDL933
definition: The genome of an organism of Escherichia coli O157:H7 str. EDL933
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 155864

genome of Staphylococcus aureus subsp. aureus Mu50
type: Class
subclass of: genome of Staphylococcus aureus subsp. aureus
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000158878
subclass of: Restriction
  on property: is genome of organism
  some values from: Staphylococcus aureus subsp. aureus Mu50
definition: The genome of an organism of Staphylococcus aureus subsp. aureus Mu50
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 158878

genome of Staphylococcus aureus subsp. aureus N315
type: Class
subclass of: genome of Staphylococcus aureus subsp. aureus
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000158879
subclass of: Restriction
  on property: is genome of organism
  some values from: Staphylococcus aureus subsp. aureus N315
definition: The genome of an organism of Staphylococcus aureus subsp. aureus N315
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 158879

genome of Streptococcus pyogenes M1 GAS
type: Class
subclass of: genome of Streptococcus pyogenes serotype M1
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000160490
subclass of: Restriction
  on property: is genome of organism
  some values from: Streptococcus pyogenes M1 GAS
definition: The genome of an organism of Streptococcus pyogenes M1 GAS
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 160490

genome of Streptococcus pyogenes str. Manfredo
type: Class
subclass of: genome of Streptococcus pyogenes
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000160491
subclass of: Restriction
  on property: is genome of organism
  some values from: Streptococcus pyogenes str. Manfredo
definition: The genome of an organism of Streptococcus pyogenes str. Manfredo
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 160491

genome of Emericella nidulans
type: Class
subclass of: genome of Trichocomaceae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000162425
subclass of: Restriction
  on property: is genome of organism
  some values from: Emericella nidulans
definition: The genome of an organism of Emericella nidulans
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 162425

genome of Listeria monocytogenes EGD-e
type: Class
subclass of: genome of Listeria monocytogenes
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000169963
subclass of: Restriction
  on property: is genome of organism
  some values from: Listeria monocytogenes EGD-e
definition: The genome of an organism of Listeria monocytogenes EGD-e
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 169963

genome of Streptococcus pneumoniae TIGR4
type: Class
subclass of: genome of Streptococcus pneumoniae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000170187
subclass of: Restriction
  on property: is genome of organism
  some values from: Streptococcus pneumoniae TIGR4
definition: The genome of an organism of Streptococcus pneumoniae TIGR4
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 170187

genome of Streptococcus pneumoniae R6
type: Class
subclass of: genome of Streptococcus pneumoniae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000171101
subclass of: Restriction
  on property: is genome of organism
  some values from: Streptococcus pneumoniae R6
definition: The genome of an organism of Streptococcus pneumoniae R6
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 171101

genome of Francisella tularensis subsp. tularensis SCHU S4
type: Class
subclass of: genome of Francisella tularensis
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000177416
subclass of: Restriction
  on property: is genome of organism
  some values from: Francisella tularensis subsp. tularensis SCHU S4
definition: The genome of an organism of Francisella tularensis subsp. tularensis SCHU S4
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 177416

genome of WEEV complex
type: Class
subclass of: genome of Alphavirus
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000177874
subclass of: Restriction
  on property: is genome of organism
  some values from: WEEV complex
definition: The genome of an organism of WEEV complex
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 177874

genome of Cryptococcus neoformans var. grubii
type: Class
subclass of: genome of Cryptococcus neoformans
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000178876
subclass of: Restriction
  on property: is genome of organism
  some values from: Cryptococcus neoformans var. grubii
definition: The genome of an organism of Cryptococcus neoformans var. grubii
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 178876

genome of Chlamydophila pneumoniae TW-183
type: Class
subclass of: genome of Chlamydia pneumoniae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000182082
subclass of: Restriction
  on property: is genome of organism
  some values from: Chlamydophila pneumoniae TW-183
definition: The genome of an organism of Chlamydophila pneumoniae TW-183
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 182082

genome of Trypanosoma brucei TREU927
type: Class
subclass of: genome of Trypanosoma
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000185431
subclass of: Restriction
  on property: is genome of organism
  some values from: Trypanosoma brucei TREU927
definition: The genome of an organism of Trypanosoma brucei TREU927
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 185431

genome of Streptococcus pyogenes MGAS8232
type: Class
subclass of: genome of Streptococcus pyogenes
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000186103
subclass of: Restriction
  on property: is genome of organism
  some values from: Streptococcus pyogenes MGAS8232
definition: The genome of an organism of Streptococcus pyogenes MGAS8232
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 186103

genome of Zaire ebolavirus
type: Class
subclass of: genome of Mononegavirales
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000186538
subclass of: Restriction
  on property: is genome of organism
  some values from: Zaire ebolavirus
definition: The genome of an organism of Zaire ebolavirus
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 186538

genome of Clostridiales
type: Class
subclass of: genome of Firmicutes
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000186802
subclass of: Restriction
  on property: is genome of organism
  some values from: Clostridiales
definition: The genome of an organism of Clostridiales
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 186802

genome of Lactobacillales
type: Class
subclass of: genome of Bacilli
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000186826
subclass of: Restriction
  on property: is genome of organism
  some values from: Lactobacillales
definition: The genome of an organism of Lactobacillales
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 186826

genome of Yersinia pestis KIM10+
type: Class
subclass of: genome of Yersinia pestis
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000187410
subclass of: Restriction
  on property: is genome of organism
  some values from: Yersinia pestis KIM10+
definition: The genome of an organism of Yersinia pestis KIM10+
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 187410

genome of Leptospira interrogans serovar Lai str. 56601
type: Class
subclass of: genome of Spirochaetales
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000189518
subclass of: Restriction
  on property: is genome of organism
  some values from: Leptospira interrogans serovar Lai str. 56601
definition: The genome of an organism of Leptospira interrogans serovar Lai str. 56601
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 189518

genome of Bacillus anthracis str. A2012
type: Class
subclass of: genome of Bacillus anthracis
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000191218
subclass of: Restriction
  on property: is genome of organism
  some values from: Bacillus anthracis str. A2012
definition: The genome of an organism of Bacillus anthracis str. A2012
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 191218

genome of Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819
type: Class
subclass of: genome of Campylobacter jejuni subsp. jejuni
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000192222
subclass of: Restriction
  on property: is genome of organism
  some values from: Campylobacter jejuni subsp. jejuni NCTC 11168
definition: The genome of an organism of Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 192222

genome of Streptococcus pyogenes SSI-1
type: Class
subclass of: genome of Streptococcus pyogenes serotype M3
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000193567
subclass of: Restriction
  on property: is genome of organism
  some values from: Streptococcus pyogenes SSI-1
definition: The genome of an organism of Streptococcus pyogenes SSI-1
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 193567

genome of Campylobacter jejuni RM1221
type: Class
subclass of: genome of Campylobacter jejuni
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000195099
subclass of: Restriction
  on property: is genome of organism
  some values from: Campylobacter jejuni RM1221
definition: The genome of an organism of Campylobacter jejuni RM1221
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 195099

genome of Clostridium perfringens str. 13
type: Class
subclass of: genome of Clostridium perfringens
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000195102
subclass of: Restriction
  on property: is genome of organism
  some values from: Clostridium perfringens str. 13
definition: The genome of an organism of Clostridium perfringens str. 13
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 195102

genome of Clostridium perfringens ATCC 13124
type: Class
subclass of: genome of Clostridium perfringens
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000195103
subclass of: Restriction
  on property: is genome of organism
  some values from: Clostridium perfringens ATCC 13124
definition: The genome of an organism of Clostridium perfringens ATCC 13124
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 195103

genome of Staphylococcus aureus subsp. aureus MW2
type: Class
subclass of: genome of Staphylococcus aureus subsp. aureus
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000196620
subclass of: Restriction
  on property: is genome of organism
  some values from: Staphylococcus aureus subsp. aureus MW2
definition: The genome of an organism of Staphylococcus aureus subsp. aureus MW2
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 196620

genome of Bacillus anthracis str. Ames
type: Class
subclass of: genome of Bacillus anthracis
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000198094
subclass of: Restriction
  on property: is genome of organism
  some values from: Bacillus anthracis str. Ames
definition: The genome of an organism of Bacillus anthracis str. Ames
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 198094

genome of Shigella flexneri 2a str. 301
type: Class
subclass of: genome of Shigella flexneri 2a
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000198214
subclass of: Restriction
  on property: is genome of organism
  some values from: Shigella flexneri 2a str. 301
definition: The genome of an organism of Shigella flexneri 2a str. 301
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 198214

genome of Shigella flexneri 2a str. 2457T
type: Class
subclass of: genome of Shigella flexneri 2a
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000198215
subclass of: Restriction
  on property: is genome of organism
  some values from: Shigella flexneri 2a str. 2457T
definition: The genome of an organism of Shigella flexneri 2a str. 2457T
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 198215

genome of Streptococcus pyogenes MGAS315
type: Class
subclass of: genome of Streptococcus pyogenes serotype M3
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000198466
subclass of: Restriction
  on property: is genome of organism
  some values from: Streptococcus pyogenes MGAS315
definition: The genome of an organism of Streptococcus pyogenes MGAS315
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 198466

genome of Coccidioides posadasii
type: Class
subclass of: genome of Onygenales
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000199306
subclass of: Restriction
  on property: is genome of organism
  some values from: Coccidioides posadasii
definition: The genome of an organism of Coccidioides posadasii
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 199306

genome of Escherichia coli CFT073
type: Class
subclass of: genome of Escherichia coli
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000199310
subclass of: Restriction
  on property: is genome of organism
  some values from: Escherichia coli CFT073
definition: The genome of an organism of Escherichia coli CFT073
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 199310

genome of Brucella suis 1330
type: Class
subclass of: genome of Brucella
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000204722
subclass of: Restriction
  on property: is genome of organism
  some values from: Brucella suis 1330
definition: The genome of an organism of Brucella suis 1330
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 204722

genome of Streptococcus agalactiae A909
type: Class
subclass of: genome of Streptococcus agalactiae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000205921
subclass of: Restriction
  on property: is genome of organism
  some values from: Streptococcus agalactiae A909
definition: The genome of an organism of Streptococcus agalactiae A909
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 205921

genome of Streptococcus agalactiae 2603V/R
type: Class
subclass of: genome of Streptococcus agalactiae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000208435
subclass of: Restriction
  on property: is genome of organism
  some values from: Streptococcus agalactiae 2603V/R
definition: The genome of an organism of Streptococcus agalactiae 2603V/R
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 208435

genome of Pseudomonas aeruginosa UCBPP-PA14
type: Class
subclass of: genome of Pseudomonas aeruginosa
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000208963
subclass of: Restriction
  on property: is genome of organism
  some values from: Pseudomonas aeruginosa UCBPP-PA14
definition: The genome of an organism of Pseudomonas aeruginosa UCBPP-PA14
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 208963

genome of Pseudomonas aeruginosa PAO1
type: Class
subclass of: genome of Pseudomonas aeruginosa
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000208964
subclass of: Restriction
  on property: is genome of organism
  some values from: Pseudomonas aeruginosa PAO1
definition: The genome of an organism of Pseudomonas aeruginosa PAO1
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 208964

genome of Salmonella enterica subsp. enterica serovar Typhi str. Ty2
type: Class
subclass of: genome of Salmonella enterica subsp. enterica serovar Typhi
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000209261
subclass of: Restriction
  on property: is genome of organism
  some values from: Salmonella enterica subsp. enterica serovar Typhi str. Ty2
definition: The genome of an organism of Salmonella enterica subsp. enterica serovar Typhi str. Ty2
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 209261

genome of Influenza A virus (A/Puerto Rico/8/1934(H1N1))
type: Class
subclass of: genome of Influenza A virus
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000211044
subclass of: Restriction
  on property: is genome of organism
  some values from: Influenza A virus (A/Puerto Rico/8/1934(H1N1))
definition: The genome of an organism of Influenza A virus (A/Puerto Rico/8/1934(H1N1))
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 211044

genome of Streptococcus agalactiae NEM316
type: Class
subclass of: genome of Streptococcus agalactiae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000211110
subclass of: Restriction
  on property: is genome of organism
  some values from: Streptococcus agalactiae NEM316
definition: The genome of an organism of Streptococcus agalactiae NEM316
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 211110

genome of Clostridium tetani E88
type: Class
subclass of: genome of Clostridium
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000212717
subclass of: Restriction
  on property: is genome of organism
  some values from: Clostridium tetani E88
definition: The genome of an organism of Clostridium tetani E88
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 212717

genome of Campylobacterales
type: Class
subclass of: genome of Proteobacteria
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000213849
subclass of: Restriction
  on property: is genome of organism
  some values from: Campylobacterales
definition: The genome of an organism of Campylobacterales
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 213849

genome of Yersinia pestis CO92
type: Class
subclass of: genome of Yersinia pestis
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000214092
subclass of: Restriction
  on property: is genome of organism
  some values from: Yersinia pestis CO92
definition: The genome of an organism of Yersinia pestis CO92
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 214092

genome of Cryptococcus neoformans var. neoformans JEC21
type: Class
subclass of: genome of Cryptococcus neoformans var. neoformans
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000214684
subclass of: Restriction
  on property: is genome of organism
  some values from: Cryptococcus neoformans var. neoformans JEC21
definition: The genome of an organism of Cryptococcus neoformans var. neoformans JEC21
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 214684

genome of Salmonella enterica subsp. enterica serovar Typhi str. CT18
type: Class
subclass of: genome of Salmonella enterica subsp. enterica serovar Typhi
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000220341
subclass of: Restriction
  on property: is genome of organism
  some values from: Salmonella enterica subsp. enterica serovar Typhi str. CT18
definition: The genome of an organism of Salmonella enterica subsp. enterica serovar Typhi str. CT18
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 220341

genome of Borrelia burgdorferi B31
type: Class
subclass of: genome of Borrelia burgdorferi
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000224326
subclass of: Restriction
  on property: is genome of organism
  some values from: Borrelia burgdorferi B31
definition: The genome of an organism of Borrelia burgdorferi B31
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 224326

genome of Brucella melitensis bv. 1 str. 16M
type: Class
subclass of: genome of Brucella melitensis
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000224914
subclass of: Restriction
  on property: is genome of organism
  some values from: Brucella melitensis bv. 1 str. 16M
definition: The genome of an organism of Brucella melitensis bv. 1 str. 16M
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 224914

genome of Enterococcus faecalis V583
type: Class
subclass of: genome of Enterococcus faecalis
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000226185
subclass of: Restriction
  on property: is genome of organism
  some values from: Enterococcus faecalis V583
definition: The genome of an organism of Enterococcus faecalis V583
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 226185

genome of Aspergillus nidulans FGSC A4
type: Class
subclass of: genome of Emericella nidulans
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000227321
subclass of: Restriction
  on property: is genome of organism
  some values from: Aspergillus nidulans FGSC A4
definition: The genome of an organism of Aspergillus nidulans FGSC A4
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 227321

genome of Coxiella burnetii RSA 493
type: Class
subclass of: genome of Legionellales
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000227377
subclass of: Restriction
  on property: is genome of organism
  some values from: Coxiella burnetii RSA 493
definition: The genome of an organism of Coxiella burnetii RSA 493
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 227377

genome of Yersinia pestis biovar Microtus str. 91001
type: Class
subclass of: genome of Yersinia pestis
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000229193
subclass of: Restriction
  on property: is genome of organism
  some values from: Yersinia pestis biovar Microtus str. 91001
definition: The genome of an organism of Yersinia pestis biovar Microtus str. 91001
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 229193

genome of Candida albicans SC5314
type: Class
subclass of: genome of Candida albicans
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000237561
subclass of: Restriction
  on property: is genome of organism
  some values from: Candida albicans SC5314
definition: The genome of an organism of Candida albicans SC5314
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 237561

genome of Burkholderia mallei ATCC 23344
type: Class
subclass of: genome of Burkholderia mallei
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000243160
subclass of: Restriction
  on property: is genome of organism
  some values from: Burkholderia mallei ATCC 23344
definition: The genome of an organism of Burkholderia mallei ATCC 23344
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 243160

genome of Vibrio cholerae O1 biovar El Tor str. N16961
type: Class
subclass of: genome of Vibrio cholerae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000243277
subclass of: Restriction
  on property: is genome of organism
  some values from: Vibrio cholerae O1 biovar El Tor str. N16961
definition: The genome of an organism of Vibrio cholerae O1 biovar El Tor str. N16961
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 243277

genome of Corynebacterium diphtheriae NCTC 13129
type: Class
subclass of: genome of Corynebacterineae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000257309
subclass of: Restriction
  on property: is genome of organism
  some values from: Corynebacterium diphtheriae NCTC 13129
definition: The genome of an organism of Corynebacterium diphtheriae NCTC 13129
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 257309

genome of Bordetella bronchiseptica RB50
type: Class
subclass of: genome of Bordetella
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000257310
subclass of: Restriction
  on property: is genome of organism
  some values from: Bordetella bronchiseptica RB50
definition: The genome of an organism of Bordetella bronchiseptica RB50
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 257310

genome of Bordetella pertussis Tohama I
type: Class
subclass of: genome of Bordetella pertussis
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000257313
subclass of: Restriction
  on property: is genome of organism
  some values from: Bordetella pertussis Tohama I
definition: The genome of an organism of Bordetella pertussis Tohama I
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 257313

genome of Bacillus anthracis str. Sterne
type: Class
subclass of: genome of Bacillus anthracis
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000260799
subclass of: Restriction
  on property: is genome of organism
  some values from: Bacillus anthracis str. Sterne
definition: The genome of an organism of Bacillus anthracis str. Sterne
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 260799

genome of Bacillus anthracis str. 'Ames Ancestor'
type: Class
subclass of: genome of Bacillus anthracis
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000261594
subclass of: Restriction
  on property: is genome of organism
  some values from: Bacillus anthracis str. 'Ames Ancestor'
definition: The genome of an organism of Bacillus anthracis str. 'Ames Ancestor'
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 261594

genome of Orgyia pseudotsugata MNPV
type: Class
subclass of: genome of Alphabaculovirus
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000262177
subclass of: Restriction
  on property: is genome of organism
  some values from: Orgyia pseudotsugata MNPV
definition: The genome of an organism of Orgyia pseudotsugata MNPV
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 262177

genome of Mycobacterium avium subsp. paratuberculosis K-10
type: Class
subclass of: genome of Mycobacterium
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000262316
subclass of: Restriction
  on property: is genome of organism
  some values from: Mycobacterium avium subsp. paratuberculosis K-10
definition: The genome of an organism of Mycobacterium avium subsp. paratuberculosis K-10
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 262316

genome of Listeria monocytogenes serotype 4b str. F2365
type: Class
subclass of: genome of Listeria monocytogenes
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000265669
subclass of: Restriction
  on property: is genome of organism
  some values from: Listeria monocytogenes serotype 4b str. F2365
definition: The genome of an organism of Listeria monocytogenes serotype 4b str. F2365
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 265669

genome of Pneumonia virus of mice J3666
type: Class
subclass of: genome of Pneumovirus
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000270473
subclass of: Restriction
  on property: is genome of organism
  some values from: Pneumonia virus of mice J3666
definition: The genome of an organism of Pneumonia virus of mice J3666
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 270473

genome of Bombyx mori NPV
type: Class
subclass of: genome of Alphabaculovirus
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000271108
subclass of: Restriction
  on property: is genome of organism
  some values from: Bombyx mori NPV
definition: The genome of an organism of Bombyx mori NPV
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 271108

genome of Burkholderia pseudomallei K96243
type: Class
subclass of: genome of Burkholderia pseudomallei
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000272560
subclass of: Restriction
  on property: is genome of organism
  some values from: Burkholderia pseudomallei K96243
definition: The genome of an organism of Burkholderia pseudomallei K96243
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 272560

genome of Chlamydia trachomatis D/UW-3/CX
type: Class
subclass of: genome of Chlamydia
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000272561
subclass of: Restriction
  on property: is genome of organism
  some values from: Chlamydia trachomatis D/UW-3/CX
definition: The genome of an organism of Chlamydia trachomatis D/UW-3/CX
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 272561

genome of Clostridium difficile 630
type: Class
subclass of: genome of [Clostridium] difficile
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000272563
subclass of: Restriction
  on property: is genome of organism
  some values from: Clostridioides difficile 630
definition: The genome of an organism of Clostridium difficile 630
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 272563

genome of Legionella pneumophila subsp. pneumophila str. Philadelphia 1
type: Class
subclass of: genome of Legionella pneumophila
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000272624
subclass of: Restriction
  on property: is genome of organism
  some values from: Legionella pneumophila subsp. pneumophila str. Philadelphia 1
definition: The genome of an organism of Legionella pneumophila subsp. pneumophila str. Philadelphia 1
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 272624

genome of Neisseria meningitidis FAM18
type: Class
subclass of: genome of Neisseria meningitidis serogroup C
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000272831
subclass of: Restriction
  on property: is genome of organism
  some values from: Neisseria meningitidis FAM18
definition: The genome of an organism of Neisseria meningitidis FAM18
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 272831

genome of Pasteurella multocida subsp. multocida str. Pm70
type: Class
subclass of: genome of Pasteurella multocida
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000272843
subclass of: Restriction
  on property: is genome of organism
  some values from: Pasteurella multocida subsp. multocida str. Pm70
definition: The genome of an organism of Pasteurella multocida subsp. multocida str. Pm70
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 272843

genome of Rickettsia prowazekii str. Madrid E
type: Class
subclass of: genome of Alphaproteobacteria
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000272947
subclass of: Restriction
  on property: is genome of organism
  some values from: Rickettsia prowazekii str. Madrid E
definition: The genome of an organism of Rickettsia prowazekii str. Madrid E
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 272947

genome of Staphylococcus aureus RF122
type: Class
subclass of: genome of Staphylococcus aureus
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000273036
subclass of: Restriction
  on property: is genome of organism
  some values from: Staphylococcus aureus RF122
definition: The genome of an organism of Staphylococcus aureus RF122
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 273036

genome of Yersinia pseudotuberculosis IP 32953
type: Class
subclass of: genome of Yersinia pseudotuberculosis
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000273123
subclass of: Restriction
  on property: is genome of organism
  some values from: Yersinia pseudotuberculosis IP 32953
definition: The genome of an organism of Yersinia pseudotuberculosis IP 32953
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 273123

genome of Haemophilus influenzae 86-028NP
type: Class
subclass of: genome of Haemophilus influenzae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000281310
subclass of: Restriction
  on property: is genome of organism
  some values from: Haemophilus influenzae 86-028NP
definition: The genome of an organism of Haemophilus influenzae 86-028NP
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 281310

genome of Staphylococcus aureus subsp. aureus MRSA252
type: Class
subclass of: genome of Staphylococcus aureus subsp. aureus
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000282458
subclass of: Restriction
  on property: is genome of organism
  some values from: Staphylococcus aureus subsp. aureus MRSA252
definition: The genome of an organism of Staphylococcus aureus subsp. aureus MRSA252
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 282458

genome of Bartonella henselae str. Houston-1
type: Class
subclass of: genome of Bartonella henselae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000283166
subclass of: Restriction
  on property: is genome of organism
  some values from: Bartonella henselae str. Houston-1
definition: The genome of an organism of Bartonella henselae str. Houston-1
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 283166

genome of Cryptococcus neoformans var. neoformans B-3501A
type: Class
subclass of: genome of Cryptococcus neoformans var. neoformans
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000283643
subclass of: Restriction
  on property: is genome of organism
  some values from: Cryptococcus neoformans var. neoformans B-3501A
definition: The genome of an organism of Cryptococcus neoformans var. neoformans B-3501A
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 283643

genome of Influenza A virus (A/Viet Nam/1203/2004(H5N1))
type: Class
subclass of: genome of H5N1 subtype
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000284218
subclass of: Restriction
  on property: is genome of organism
  some values from: Influenza A virus (A/Viet Nam/1203/2004(H5N1))
definition: The genome of an organism of Influenza A virus (A/Viet Nam/1203/2004(H5N1))
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 284218

genome of Candida glabrata CBS 138
type: Class
subclass of: genome of Candida glabrata
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000284593
subclass of: Restriction
  on property: is genome of organism
  some values from: Candida glabrata CBS 138
definition: The genome of an organism of Candida glabrata CBS 138
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 284593

genome of Streptococcus pyogenes MGAS10394
type: Class
subclass of: genome of Streptococcus pyogenes
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000286636
subclass of: Restriction
  on property: is genome of organism
  some values from: Streptococcus pyogenes MGAS10394
definition: The genome of an organism of Streptococcus pyogenes MGAS10394
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 286636

genome of Clostridium perfringens SM101
type: Class
subclass of: genome of Clostridium perfringens
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000289380
subclass of: Restriction
  on property: is genome of organism
  some values from: Clostridium perfringens SM101
definition: The genome of an organism of Clostridium perfringens SM101
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 289380

genome of Streptococcus pyogenes MGAS5005
type: Class
subclass of: genome of Streptococcus pyogenes serotype M1
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000293653
subclass of: Restriction
  on property: is genome of organism
  some values from: Streptococcus pyogenes MGAS5005
definition: The genome of an organism of Streptococcus pyogenes MGAS5005
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 293653

genome of Entamoeba histolytica HM-1:IMSS
type: Class
subclass of: genome of Entamoeba histolytica
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000294381
subclass of: Restriction
  on property: is genome of organism
  some values from: Entamoeba histolytica HM-1:IMSS
definition: The genome of an organism of Entamoeba histolytica HM-1:IMSS
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 294381

genome of Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
type: Class
subclass of: genome of Salmonella enterica subsp. enterica
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000295319
subclass of: Restriction
  on property: is genome of organism
  some values from: Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
definition: The genome of an organism of Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 295319

genome of Legionella pneumophila str. Lens
type: Class
subclass of: genome of Legionella pneumophila
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000297245
subclass of: Restriction
  on property: is genome of organism
  some values from: Legionella pneumophila str. Lens
definition: The genome of an organism of Legionella pneumophila str. Lens
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 297245

genome of Legionella pneumophila str. Paris
type: Class
subclass of: genome of Legionella pneumophila
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000297246
subclass of: Restriction
  on property: is genome of organism
  some values from: Legionella pneumophila str. Paris
definition: The genome of an organism of Legionella pneumophila str. Paris
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 297246

genome of Shigella dysenteriae Sd197
type: Class
subclass of: genome of Shigella
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000300267
subclass of: Restriction
  on property: is genome of organism
  some values from: Shigella dysenteriae Sd197
definition: The genome of an organism of Shigella dysenteriae Sd197
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 300267

genome of Shigella boydii Sb227
type: Class
subclass of: genome of Shigella boydii
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000300268
subclass of: Restriction
  on property: is genome of organism
  some values from: Shigella boydii Sb227
definition: The genome of an organism of Shigella boydii Sb227
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 300268

genome of Shigella sonnei Ss046
type: Class
subclass of: genome of Shigella
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000300269
subclass of: Restriction
  on property: is genome of organism
  some values from: Shigella sonnei Ss046
definition: The genome of an organism of Shigella sonnei Ss046
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 300269

genome of Streptococcus pyogenes serotype M1
type: Class
subclass of: genome of Streptococcus pyogenes
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000301447
subclass of: Restriction
  on property: is genome of organism
  some values from: Streptococcus pyogenes serotype M1
definition: The genome of an organism of Streptococcus pyogenes serotype M1
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 301447

genome of Streptococcus pyogenes serotype M3
type: Class
subclass of: genome of Streptococcus pyogenes
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000301448
subclass of: Restriction
  on property: is genome of organism
  some values from: Streptococcus pyogenes serotype M3
definition: The genome of an organism of Streptococcus pyogenes serotype M3
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 301448

genome of Escherichia coli str. K-12 substr. DH10B
type: Class
subclass of: genome of Escherichia coli K-12
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000316385
subclass of: Restriction
  on property: is genome of organism
  some values from: Escherichia coli str. K-12 substr. DH10B
definition: The genome of an organism of Escherichia coli str. K-12 substr. DH10B
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 316385

genome of Escherichia coli ETEC H10407
type: Class
subclass of: genome of Escherichia coli
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000316401
subclass of: Restriction
  on property: is genome of organism
  some values from: Escherichia coli ETEC H10407
definition: The genome of an organism of Escherichia coli ETEC H10407
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 316401

genome of Streptococcus pyogenes MGAS6180
type: Class
subclass of: genome of Streptococcus pyogenes
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000319701
subclass of: Restriction
  on property: is genome of organism
  some values from: Streptococcus pyogenes MGAS6180
definition: The genome of an organism of Streptococcus pyogenes MGAS6180
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 319701

genome of Burkholderia pseudomallei 1710b
type: Class
subclass of: genome of Burkholderia pseudomallei
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000320372
subclass of: Restriction
  on property: is genome of organism
  some values from: Burkholderia pseudomallei 1710b
definition: The genome of an organism of Burkholderia pseudomallei 1710b
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 320372

genome of Burkholderia pseudomallei 668
type: Class
subclass of: genome of Burkholderia pseudomallei
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000320373
subclass of: Restriction
  on property: is genome of organism
  some values from: Burkholderia pseudomallei 668
definition: The genome of an organism of Burkholderia pseudomallei 668
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 320373

genome of Burkholderia mallei SAVP1
type: Class
subclass of: genome of Burkholderia mallei
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000320388
subclass of: Restriction
  on property: is genome of organism
  some values from: Burkholderia mallei SAVP1
definition: The genome of an organism of Burkholderia mallei SAVP1
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 320388

genome of Burkholderia mallei NCTC 10247
type: Class
subclass of: genome of Burkholderia mallei
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000320389
subclass of: Restriction
  on property: is genome of organism
  some values from: Burkholderia mallei NCTC 10247
definition: The genome of an organism of Burkholderia mallei NCTC 10247
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 320389

genome of Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67
type: Class
subclass of: genome of Salmonella enterica subsp. enterica
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000321314
subclass of: Restriction
  on property: is genome of organism
  some values from: Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67
definition: The genome of an organism of Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 321314

genome of Aspergillus fumigatus Af293
type: Class
subclass of: genome of Trichocomaceae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000330879
subclass of: Restriction
  on property: is genome of organism
  some values from: Aspergillus fumigatus Af293
definition: The genome of an organism of Aspergillus fumigatus Af293
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 330879

genome of Escherichia coli E24377A
type: Class
subclass of: genome of Escherichia coli
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000331111
subclass of: Restriction
  on property: is genome of organism
  some values from: Escherichia coli E24377A
definition: The genome of an organism of Escherichia coli E24377A
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 331111

genome of Escherichia coli HS
type: Class
subclass of: genome of Escherichia coli
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000331112
subclass of: Restriction
  on property: is genome of organism
  some values from: Escherichia coli HS
definition: The genome of an organism of Escherichia coli HS
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 331112

genome of Mycobacterium tuberculosis F11
type: Class
subclass of: genome of Mycobacterium tuberculosis
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000336982
subclass of: Restriction
  on property: is genome of organism
  some values from: Mycobacterium tuberculosis F11
definition: The genome of an organism of Mycobacterium tuberculosis F11
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 336982

genome of Streptococcus pyogenes serotype M12
type: Class
subclass of: genome of Streptococcus pyogenes
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000342023
subclass of: Restriction
  on property: is genome of organism
  some values from: Streptococcus pyogenes serotype M12
definition: The genome of an organism of Streptococcus pyogenes serotype M12
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 342023

genome of Shigella boydii CDC 3083-94
type: Class
subclass of: genome of Shigella boydii
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000344609
subclass of: Restriction
  on property: is genome of organism
  some values from: Shigella boydii CDC 3083-94
definition: The genome of an organism of Shigella boydii CDC 3083-94
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 344609

genome of SARS coronavirus ZJ0301
type: Class
subclass of: genome of Severe acute respiratory syndrome-related coronavirus
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000344702
subclass of: Restriction
  on property: is genome of organism
  some values from: SARS coronavirus ZJ0301
definition: The genome of an organism of SARS coronavirus ZJ0301
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 344702

genome of Vibrio cholerae O395
type: Class
subclass of: genome of Vibrio cholerae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000345073
subclass of: Restriction
  on property: is genome of organism
  some values from: Vibrio cholerae O395
definition: The genome of an organism of Vibrio cholerae O395
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 345073

genome of Leishmania major strain Friedlin
type: Class
subclass of: genome of Leishmania major
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000347515
subclass of: Restriction
  on property: is genome of organism
  some values from: Leishmania major strain Friedlin
definition: The genome of an organism of Leishmania major strain Friedlin
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 347515

genome of Yersinia pestis Angola
type: Class
subclass of: genome of Yersinia pestis
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000349746
subclass of: Restriction
  on property: is genome of organism
  some values from: Yersinia pestis Angola
definition: The genome of an organism of Yersinia pestis Angola
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 349746

genome of Yersinia pseudotuberculosis IP 31758
type: Class
subclass of: genome of Yersinia pseudotuberculosis
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000349747
subclass of: Restriction
  on property: is genome of organism
  some values from: Yersinia pseudotuberculosis IP 31758
definition: The genome of an organism of Yersinia pseudotuberculosis IP 31758
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 349747

genome of Plasmodium yoelii yoelii 17XNL
type: Class
subclass of: genome of Plasmodium yoelii yoelii
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000352914
subclass of: Restriction
  on property: is genome of organism
  some values from: Plasmodium yoelii yoelii 17XNL
definition: The genome of an organism of Plasmodium yoelii yoelii 17XNL
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 352914

genome of Cryptosporidium parvum Iowa II
type: Class
subclass of: genome of Eimeriorina
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000353152
subclass of: Restriction
  on property: is genome of organism
  some values from: Cryptosporidium parvum Iowa II
definition: The genome of an organism of Cryptosporidium parvum Iowa II
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 353152

genome of Trypanosoma cruzi strain CL Brener
type: Class
subclass of: genome of Trypanosoma cruzi
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000353153
subclass of: Restriction
  on property: is genome of organism
  some values from: Trypanosoma cruzi strain CL Brener
definition: The genome of an organism of Trypanosoma cruzi strain CL Brener
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 353153

genome of Campylobacter jejuni subsp. jejuni 81-176
type: Class
subclass of: genome of Campylobacter jejuni subsp. jejuni
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000354242
subclass of: Restriction
  on property: is genome of organism
  some values from: Campylobacter jejuni subsp. jejuni 81-176
definition: The genome of an organism of Campylobacter jejuni subsp. jejuni 81-176
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 354242

genome of Burkholderia pseudomallei 1106a
type: Class
subclass of: genome of Burkholderia pseudomallei
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000357348
subclass of: Restriction
  on property: is genome of organism
  some values from: Burkholderia pseudomallei 1106a
definition: The genome of an organism of Burkholderia pseudomallei 1106a
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 357348

genome of Brucella melitensis biovar Abortus 2308
type: Class
subclass of: genome of Brucella abortus
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000359391
subclass of: Restriction
  on property: is genome of organism
  some values from: Brucella abortus 2308
definition: The genome of an organism of Brucella melitensis biovar Abortus 2308
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 359391

genome of Bartonella bacilliformis KC583
type: Class
subclass of: genome of Bartonella
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000360095
subclass of: Restriction
  on property: is genome of organism
  some values from: Bartonella bacilliformis KC583
definition: The genome of an organism of Bartonella bacilliformis KC583
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 360095

genome of Yersinia pestis Antiqua
type: Class
subclass of: genome of Yersinia pestis
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000360102
subclass of: Restriction
  on property: is genome of organism
  some values from: Yersinia pestis Antiqua
definition: The genome of an organism of Yersinia pestis Antiqua
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 360102

genome of Campylobacter jejuni subsp. doylei 269.97
type: Class
subclass of: genome of Campylobacter jejuni
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000360109
subclass of: Restriction
  on property: is genome of organism
  some values from: Campylobacter jejuni subsp. doylei 269.97
definition: The genome of an organism of Campylobacter jejuni subsp. doylei 269.97
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 360109

genome of Bordetella avium 197N
type: Class
subclass of: genome of Bordetella
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000360910
subclass of: Restriction
  on property: is genome of organism
  some values from: Bordetella avium 197N
definition: The genome of an organism of Bordetella avium 197N
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 360910

genome of Escherichia coli 536
type: Class
subclass of: genome of Escherichia coli
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000362663
subclass of: Restriction
  on property: is genome of organism
  some values from: Escherichia coli 536
definition: The genome of an organism of Escherichia coli 536
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 362663

genome of Escherichia coli UTI89
type: Class
subclass of: genome of Escherichia coli
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000364106
subclass of: Restriction
  on property: is genome of organism
  some values from: Escherichia coli UTI89
definition: The genome of an organism of Escherichia coli UTI89
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 364106

genome of Streptococcus pyogenes MGAS9429
type: Class
subclass of: genome of Streptococcus pyogenes serotype M12
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000370551
subclass of: Restriction
  on property: is genome of organism
  some values from: Streptococcus pyogenes MGAS9429
definition: The genome of an organism of Streptococcus pyogenes MGAS9429
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 370551

genome of Streptococcus pyogenes MGAS10270
type: Class
subclass of: genome of Streptococcus pyogenes
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000370552
subclass of: Restriction
  on property: is genome of organism
  some values from: Streptococcus pyogenes MGAS10270
definition: The genome of an organism of Streptococcus pyogenes MGAS10270
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 370552

genome of Streptococcus pyogenes MGAS2096
type: Class
subclass of: genome of Streptococcus pyogenes serotype M12
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000370553
subclass of: Restriction
  on property: is genome of organism
  some values from: Streptococcus pyogenes MGAS2096
definition: The genome of an organism of Streptococcus pyogenes MGAS2096
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 370553

genome of Streptococcus pyogenes MGAS10750
type: Class
subclass of: genome of Streptococcus pyogenes
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000370554
subclass of: Restriction
  on property: is genome of organism
  some values from: Streptococcus pyogenes MGAS10750
definition: The genome of an organism of Streptococcus pyogenes MGAS10750
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 370554

genome of Streptococcus pneumoniae D39
type: Class
subclass of: genome of Streptococcus pneumoniae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000373153
subclass of: Restriction
  on property: is genome of organism
  some values from: Streptococcus pneumoniae D39
definition: The genome of an organism of Streptococcus pneumoniae D39
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 373153

genome of Shigella flexneri 5 str. 8401
type: Class
subclass of: genome of Shigella flexneri
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000373384
subclass of: Restriction
  on property: is genome of organism
  some values from: Shigella flexneri 5 str. 8401
definition: The genome of an organism of Shigella flexneri 5 str. 8401
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 373384

genome of Neisseria meningitidis 053442
type: Class
subclass of: genome of Neisseria meningitidis serogroup C
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000374833
subclass of: Restriction
  on property: is genome of organism
  some values from: Neisseria meningitidis 053442
definition: The genome of an organism of Neisseria meningitidis 053442
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 374833

genome of Francisella tularensis subsp. holarctica LVS
type: Class
subclass of: genome of Francisella tularensis subsp. holarctica
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000376619
subclass of: Restriction
  on property: is genome of organism
  some values from: Francisella tularensis subsp. holarctica LVS
definition: The genome of an organism of Francisella tularensis subsp. holarctica LVS
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 376619

genome of Escherichia coli O26:H-
type: Class
subclass of: genome of Escherichia coli
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000376724
subclass of: Restriction
  on property: is genome of organism
  some values from: Escherichia coli O26:H-
definition: The genome of an organism of Escherichia coli O26:H-
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 376724

genome of Yersinia pestis Nepal516
type: Class
subclass of: genome of Yersinia pestis
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000377628
subclass of: Restriction
  on property: is genome of organism
  some values from: Yersinia pestis Nepal516
definition: The genome of an organism of Yersinia pestis Nepal516
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 377628

genome of Aeromonas salmonicida subsp. salmonicida A449
type: Class
subclass of: genome of Gammaproteobacteria
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000382245
subclass of: Restriction
  on property: is genome of organism
  some values from: Aeromonas salmonicida subsp. salmonicida A449
definition: The genome of an organism of Aeromonas salmonicida subsp. salmonicida A449
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 382245

genome of Bartonella tribocorum CIP 105476
type: Class
subclass of: genome of Bartonella
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000382640
subclass of: Restriction
  on property: is genome of organism
  some values from: Bartonella tribocorum CIP 105476
definition: The genome of an organism of Bartonella tribocorum CIP 105476
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 382640

genome of Escherichia coli O157:H7 str. Sakai
type: Class
subclass of: genome of Escherichia coli O157:H7
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000386585
subclass of: Restriction
  on property: is genome of organism
  some values from: Escherichia coli O157:H7 str. Sakai
definition: The genome of an organism of Escherichia coli O157:H7 str. Sakai
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 386585

genome of Yersinia pestis Pestoides F
type: Class
subclass of: genome of Yersinia pestis
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000386656
subclass of: Restriction
  on property: is genome of organism
  some values from: Yersinia pestis Pestoides F
definition: The genome of an organism of Yersinia pestis Pestoides F
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 386656

genome of Yersinia enterocolitica subsp. enterocolitica 8081
type: Class
subclass of: genome of Yersinia enterocolitica
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000393305
subclass of: Restriction
  on property: is genome of organism
  some values from: Yersinia enterocolitica subsp. enterocolitica 8081
definition: The genome of an organism of Yersinia enterocolitica subsp. enterocolitica 8081
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 393305

genome of Legionella pneumophila str. Corby
type: Class
subclass of: genome of Legionella pneumophila
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000400673
subclass of: Restriction
  on property: is genome of organism
  some values from: Legionella pneumophila str. Corby
definition: The genome of an organism of Legionella pneumophila str. Corby
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 400673

genome of Escherichia coli APEC O1
type: Class
subclass of: genome of Escherichia coli
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000405955
subclass of: Restriction
  on property: is genome of organism
  some values from: Escherichia coli APEC O1
definition: The genome of an organism of Escherichia coli APEC O1
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 405955

genome of Campylobacter jejuni subsp. jejuni 81116
type: Class
subclass of: genome of Campylobacter jejuni subsp. jejuni
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000407148
subclass of: Restriction
  on property: is genome of organism
  some values from: Campylobacter jejuni subsp. jejuni 81116
definition: The genome of an organism of Campylobacter jejuni subsp. jejuni 81116
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 407148

genome of Escherichia coli SE11
type: Class
subclass of: genome of Escherichia coli
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000409438
subclass of: Restriction
  on property: is genome of organism
  some values from: Escherichia coli SE11
definition: The genome of an organism of Escherichia coli SE11
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 409438

genome of Burkholderia mallei NCTC 10229
type: Class
subclass of: genome of Burkholderia mallei
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000412022
subclass of: Restriction
  on property: is genome of organism
  some values from: Burkholderia mallei NCTC 10229
definition: The genome of an organism of Burkholderia mallei NCTC 10229
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 412022

genome of Yersinia pestis CA88-4125
type: Class
subclass of: genome of Yersinia pestis
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000412420
subclass of: Restriction
  on property: is genome of organism
  some values from: Yersinia pestis CA88-4125
definition: The genome of an organism of Yersinia pestis CA88-4125
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 412420

genome of Escherichia coli B str. REL606
type: Class
subclass of: genome of Escherichia coli
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000413997
subclass of: Restriction
  on property: is genome of organism
  some values from: Escherichia coli B str. REL606
definition: The genome of an organism of Escherichia coli B str. REL606
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 413997

genome of Actinobacillus pleuropneumoniae serovar 5b str. L20
type: Class
subclass of: genome of Actinobacillus pleuropneumoniae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000416269
subclass of: Restriction
  on property: is genome of organism
  some values from: Actinobacillus pleuropneumoniae serovar 5b str. L20
definition: The genome of an organism of Actinobacillus pleuropneumoniae serovar 5b str. L20
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 416269

genome of Plasmodium (Vinckeia)
type: Class
subclass of: genome of Plasmodium
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000418101
subclass of: Restriction
  on property: is genome of organism
  some values from: Plasmodium (Vinckeia)
definition: The genome of an organism of Plasmodium (Vinckeia)
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 418101

genome of Staphylococcus aureus subsp. aureus Mu3
type: Class
subclass of: genome of Staphylococcus aureus subsp. aureus
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000418127
subclass of: Restriction
  on property: is genome of organism
  some values from: Staphylococcus aureus subsp. aureus Mu3
definition: The genome of an organism of Staphylococcus aureus subsp. aureus Mu3
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 418127

genome of Mycobacterium tuberculosis H37Ra
type: Class
subclass of: genome of Mycobacterium tuberculosis
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000419947
subclass of: Restriction
  on property: is genome of organism
  some values from: Mycobacterium tuberculosis H37Ra
definition: The genome of an organism of Mycobacterium tuberculosis H37Ra
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 419947

genome of Eimeriorina
type: Class
subclass of: genome of Apicomplexa
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000423054
subclass of: Restriction
  on property: is genome of organism
  some values from: Eimeriorina
definition: The genome of an organism of Eimeriorina
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 423054

genome of Legionella pneumophila 2300/99 Alcoy
type: Class
subclass of: genome of Legionella pneumophila serogroup 1
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000423212
subclass of: Restriction
  on property: is genome of organism
  some values from: Legionella pneumophila 2300/99 Alcoy
definition: The genome of an organism of Legionella pneumophila 2300/99 Alcoy
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 423212

genome of Staphylococcus aureus subsp. aureus str. Newman
type: Class
subclass of: genome of Staphylococcus aureus subsp. aureus
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000426430
subclass of: Restriction
  on property: is genome of organism
  some values from: Staphylococcus aureus subsp. aureus str. Newman
definition: The genome of an organism of Staphylococcus aureus subsp. aureus str. Newman
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 426430

genome of Actinobacillus pleuropneumoniae serovar 3 str. JL03
type: Class
subclass of: genome of Actinobacillus pleuropneumoniae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000434271
subclass of: Restriction
  on property: is genome of organism
  some values from: Actinobacillus pleuropneumoniae serovar 3 str. JL03
definition: The genome of an organism of Actinobacillus pleuropneumoniae serovar 3 str. JL03
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 434271

genome of ssRNA viruses
type: Class
subclass of: genome of Viruses
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000439488
subclass of: Restriction
  on property: is genome of organism
  some values from: ssRNA viruses
definition: The genome of an organism of ssRNA viruses
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 439488

genome of Escherichia coli SMS-3-5
type: Class
subclass of: genome of Escherichia coli
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000439855
subclass of: Restriction
  on property: is genome of organism
  some values from: Escherichia coli SMS-3-5
definition: The genome of an organism of Escherichia coli SMS-3-5
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 439855

genome of Clostridium botulinum A str. ATCC 19397
type: Class
subclass of: genome of Clostridium botulinum A
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000441770
subclass of: Restriction
  on property: is genome of organism
  some values from: Clostridium botulinum A str. ATCC 19397
definition: The genome of an organism of Clostridium botulinum A str. ATCC 19397
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 441770

genome of Clostridium botulinum A str. Hall
type: Class
subclass of: genome of Clostridium botulinum A
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000441771
subclass of: Restriction
  on property: is genome of organism
  some values from: Clostridium botulinum A str. Hall
definition: The genome of an organism of Clostridium botulinum A str. Hall
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 441771

genome of Escherichia coli O157:H7 str. EC4115
type: Class
subclass of: genome of Escherichia coli O157:H7
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000444450
subclass of: Restriction
  on property: is genome of organism
  some values from: Escherichia coli O157:H7 str. EC4115
definition: The genome of an organism of Escherichia coli O157:H7 str. EC4115
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 444450

genome of Borrelia burgdorferi 156a
type: Class
subclass of: genome of Borrelia burgdorferi
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000445983
subclass of: Restriction
  on property: is genome of organism
  some values from: Borrelia burgdorferi 156a
definition: The genome of an organism of Borrelia burgdorferi 156a
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 445983

genome of Borrelia burgdorferi ZS7
type: Class
subclass of: genome of Borrelia burgdorferi
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000445985
subclass of: Restriction
  on property: is genome of organism
  some values from: Borrelia burgdorferi ZS7
definition: The genome of an organism of Borrelia burgdorferi ZS7
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 445985

genome of Dikarya
type: Class
subclass of: genome of Opisthokonta
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000451864
subclass of: Restriction
  on property: is genome of organism
  some values from: Dikarya
definition: The genome of an organism of Dikarya
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 451864

genome of Eurotiomycetidae
type: Class
subclass of: genome of Eurotiomycetes
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000451871
subclass of: Restriction
  on property: is genome of organism
  some values from: Eurotiomycetidae
definition: The genome of an organism of Eurotiomycetidae
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 451871

genome of Francisella tularensis subsp. holarctica FTNF002-00
type: Class
subclass of: genome of Francisella tularensis subsp. holarctica
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000458234
subclass of: Restriction
  on property: is genome of organism
  some values from: Francisella tularensis subsp. holarctica FTNF002-00
definition: The genome of an organism of Francisella tularensis subsp. holarctica FTNF002-00
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 458234

genome of Streptococcus pyogenes NZ131
type: Class
subclass of: genome of Streptococcus pyogenes
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000471876
subclass of: Restriction
  on property: is genome of organism
  some values from: Streptococcus pyogenes NZ131
definition: The genome of an organism of Streptococcus pyogenes NZ131
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 471876

genome of Enterococcus faecalis OG1RF
type: Class
subclass of: genome of Enterococcus faecalis
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000474186
subclass of: Restriction
  on property: is genome of organism
  some values from: Enterococcus faecalis OG1RF
definition: The genome of an organism of Enterococcus faecalis OG1RF
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 474186

genome of Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594
type: Class
subclass of: genome of Salmonella enterica subsp. enterica
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000476213
subclass of: Restriction
  on property: is genome of organism
  some values from: Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594
definition: The genome of an organism of Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 476213

genome of Paenibacillus sp. Y412MC10
type: Class
subclass of: genome of Bacillales
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000481743
subclass of: Restriction
  on property: is genome of organism
  some values from: Paenibacillus sp. Y412MC10
definition: The genome of an organism of Paenibacillus sp. Y412MC10
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 481743

genome of Streptococcus pneumoniae Taiwan19F-14
type: Class
subclass of: genome of Streptococcus pneumoniae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000487213
subclass of: Restriction
  on property: is genome of organism
  some values from: Streptococcus pneumoniae Taiwan19F-14
definition: The genome of an organism of Streptococcus pneumoniae Taiwan19F-14
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 487213

genome of Streptococcus pneumoniae Hungary19A-6
type: Class
subclass of: genome of Streptococcus pneumoniae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000487214
subclass of: Restriction
  on property: is genome of organism
  some values from: Streptococcus pneumoniae Hungary19A-6
definition: The genome of an organism of Streptococcus pneumoniae Hungary19A-6
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 487214

genome of Streptococcus pneumoniae 70585
type: Class
subclass of: genome of Streptococcus pneumoniae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000488221
subclass of: Restriction
  on property: is genome of organism
  some values from: Streptococcus pneumoniae 70585
definition: The genome of an organism of Streptococcus pneumoniae 70585
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 488221

genome of Streptococcus pneumoniae JJA
type: Class
subclass of: genome of Streptococcus pneumoniae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000488222
subclass of: Restriction
  on property: is genome of organism
  some values from: Streptococcus pneumoniae JJA
definition: The genome of an organism of Streptococcus pneumoniae JJA
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 488222

genome of Streptococcus pneumoniae P1031
type: Class
subclass of: genome of Streptococcus pneumoniae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000488223
subclass of: Restriction
  on property: is genome of organism
  some values from: Streptococcus pneumoniae P1031
definition: The genome of an organism of Streptococcus pneumoniae P1031
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 488223

genome of Clostridium botulinum B1 str. Okra
type: Class
subclass of: genome of Clostridium botulinum
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000498213
subclass of: Restriction
  on property: is genome of organism
  some values from: Clostridium botulinum B1 str. Okra
definition: The genome of an organism of Clostridium botulinum B1 str. Okra
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 498213

genome of Clostridium botulinum A3 str. Loch Maree
type: Class
subclass of: genome of Clostridium botulinum A
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000498214
subclass of: Restriction
  on property: is genome of organism
  some values from: Clostridium botulinum A3 str. Loch Maree
definition: The genome of an organism of Clostridium botulinum A3 str. Loch Maree
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 498214

genome of Edwardsiella tarda EIB202
type: Class
subclass of: genome of Enterobacteriaceae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000498217
subclass of: Restriction
  on property: is genome of organism
  some values from: Edwardsiella tarda EIB202
definition: The genome of an organism of Edwardsiella tarda EIB202
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 498217

genome of Yersinia pseudotuberculosis YPIII
type: Class
subclass of: genome of Yersinia pseudotuberculosis
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000502800
subclass of: Restriction
  on property: is genome of organism
  some values from: Yersinia pseudotuberculosis YPIII
definition: The genome of an organism of Yersinia pseudotuberculosis YPIII
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 502800

genome of Yersinia pseudotuberculosis PB1/+
type: Class
subclass of: genome of Yersinia pseudotuberculosis
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000502801
subclass of: Restriction
  on property: is genome of organism
  some values from: Yersinia pseudotuberculosis PB1/+
definition: The genome of an organism of Yersinia pseudotuberculosis PB1/+
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 502801

genome of Clostridium botulinum E3 str. Alaska E43
type: Class
subclass of: genome of Clostridium botulinum
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000508767
subclass of: Restriction
  on property: is genome of organism
  some values from: Clostridium botulinum E3 str. Alaska E43
definition: The genome of an organism of Clostridium botulinum E3 str. Alaska E43
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 508767

genome of Toxoplasma gondii ME49
type: Class
subclass of: genome of Toxoplasma gondii
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000508771
subclass of: Restriction
  on property: is genome of organism
  some values from: Toxoplasma gondii ME49
definition: The genome of an organism of Toxoplasma gondii ME49
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 508771

genome of Escherichia coli str. K-12 substr. MG1655
type: Class
subclass of: genome of Escherichia coli K-12
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000511145
subclass of: Restriction
  on property: is genome of organism
  some values from: Escherichia coli str. K-12 substr. MG1655
definition: The genome of an organism of Escherichia coli str. K-12 substr. MG1655
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 511145

genome of Streptococcus pneumoniae G54
type: Class
subclass of: genome of Streptococcus pneumoniae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000512566
subclass of: Restriction
  on property: is genome of organism
  some values from: Streptococcus pneumoniae G54
definition: The genome of an organism of Streptococcus pneumoniae G54
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 512566

genome of Streptococcus pneumoniae CGSP14
type: Class
subclass of: genome of Streptococcus pneumoniae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000516950
subclass of: Restriction
  on property: is genome of organism
  some values from: Streptococcus pneumoniae CGSP14
definition: The genome of an organism of Streptococcus pneumoniae CGSP14
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 516950

genome of Borrelia burgdorferi N40
type: Class
subclass of: genome of Borrelia burgdorferi
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000521007
subclass of: Restriction
  on property: is genome of organism
  some values from: Borrelia burgdorferi N40
definition: The genome of an organism of Borrelia burgdorferi N40
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 521007

genome of Borrelia burgdorferi 297
type: Class
subclass of: genome of Borrelia burgdorferi
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000521009
subclass of: Restriction
  on property: is genome of organism
  some values from: Borrelia burgdorferi 297
definition: The genome of an organism of Borrelia burgdorferi 297
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 521009

genome of Burkholderia pseudomallei MSHR346
type: Class
subclass of: genome of Burkholderia pseudomallei
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000536230
subclass of: Restriction
  on property: is genome of organism
  some values from: Burkholderia pseudomallei MSHR346
definition: The genome of an organism of Burkholderia pseudomallei MSHR346
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 536230

genome of Actinobacillus pleuropneumoniae serovar 7 str. AP76
type: Class
subclass of: genome of Actinobacillus pleuropneumoniae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000537457
subclass of: Restriction
  on property: is genome of organism
  some values from: Actinobacillus pleuropneumoniae serovar 7 str. AP76
definition: The genome of an organism of Actinobacillus pleuropneumoniae serovar 7 str. AP76
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 537457

genome of Escherichia coli O157:H7 str. TW14359
type: Class
subclass of: genome of Escherichia coli O157:H7
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000544404
subclass of: Restriction
  on property: is genome of organism
  some values from: Escherichia coli O157:H7 str. TW14359
definition: The genome of an organism of Escherichia coli O157:H7 str. TW14359
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 544404

genome of Salmonella enterica subsp. enterica serovar Enteritidis str. P125109
type: Class
subclass of: genome of Salmonella enterica subsp. enterica
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000550537
subclass of: Restriction
  on property: is genome of organism
  some values from: Salmonella enterica subsp. enterica serovar Enteritidis str. P125109
definition: The genome of an organism of Salmonella enterica subsp. enterica serovar Enteritidis str. P125109
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 550537

genome of Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91
type: Class
subclass of: genome of Salmonella enterica subsp. enterica
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000550538
subclass of: Restriction
  on property: is genome of organism
  some values from: Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91
definition: The genome of an organism of Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 550538

genome of Filobasidiella/Cryptococcus neoformans species complex
type: Class
subclass of: genome of Dikarya
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000552466
subclass of: Restriction
  on property: is genome of organism
  some values from: Filobasidiella/Cryptococcus neoformans species complex
definition: The genome of an organism of Filobasidiella/Cryptococcus neoformans species complex
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 552466

genome of Cryptococcus gattii
type: Class
subclass of: genome of Filobasidiella/Cryptococcus neoformans species complex
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000552467
subclass of: Restriction
  on property: is genome of organism
  some values from: Cryptococcus gattii
definition: The genome of an organism of Cryptococcus gattii
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 552467

genome of Streptococcus equi subsp. zooepidemicus MGCS10565
type: Class
subclass of: genome of Streptococcus
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000552526
subclass of: Restriction
  on property: is genome of organism
  some values from: Streptococcus equi subsp. zooepidemicus MGCS10565
definition: The genome of an organism of Streptococcus equi subsp. zooepidemicus MGCS10565
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 552526

genome of Listeria monocytogenes HCC23
type: Class
subclass of: genome of Listeria monocytogenes
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000552536
subclass of: Restriction
  on property: is genome of organism
  some values from: Listeria monocytogenes HCC23
definition: The genome of an organism of Listeria monocytogenes HCC23
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 552536

genome of Pseudomonas aeruginosa LESB58
type: Class
subclass of: genome of Pseudomonas aeruginosa
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000557722
subclass of: Restriction
  on property: is genome of organism
  some values from: Pseudomonas aeruginosa LESB58
definition: The genome of an organism of Pseudomonas aeruginosa LESB58
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 557722

genome of Alphabaculovirus
type: Class
subclass of: genome of dsDNA viruses, no RNA stage
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000558016
subclass of: Restriction
  on property: is genome of organism
  some values from: Alphabaculovirus
definition: The genome of an organism of Alphabaculovirus
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 558016

genome of Saccharomyces cerevisiae S288c
type: Class
subclass of: genome of Saccharomyces cerevisiae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000559292
subclass of: Restriction
  on property: is genome of organism
  some values from: Saccharomyces cerevisiae S288c
definition: The genome of an organism of Saccharomyces cerevisiae S288c
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 559292

genome of Streptococcus pneumoniae ATCC 700669
type: Class
subclass of: genome of Streptococcus pneumoniae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000561276
subclass of: Restriction
  on property: is genome of organism
  some values from: Streptococcus pneumoniae ATCC 700669
definition: The genome of an organism of Streptococcus pneumoniae ATCC 700669
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 561276

genome of Helicobacter pylori G27
type: Class
subclass of: genome of Helicobacter pylori
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000563041
subclass of: Restriction
  on property: is genome of organism
  some values from: Helicobacter pylori G27
definition: The genome of an organism of Helicobacter pylori G27
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 563041

genome of Listeria monocytogenes L99
type: Class
subclass of: genome of Listeria monocytogenes
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000563174
subclass of: Restriction
  on property: is genome of organism
  some values from: Listeria monocytogenes L99
definition: The genome of an organism of Listeria monocytogenes L99
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 563174

genome of Escherichia coli Vir68
type: Class
subclass of: genome of Escherichia coli
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000563770
subclass of: Restriction
  on property: is genome of organism
  some values from: Escherichia coli Vir68
definition: The genome of an organism of Escherichia coli Vir68
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 563770

genome of Bacillus anthracis str. CDC 684
type: Class
subclass of: genome of Bacillus anthracis
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000568206
subclass of: Restriction
  on property: is genome of organism
  some values from: Bacillus anthracis str. CDC 684
definition: The genome of an organism of Bacillus anthracis str. CDC 684
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 568206

genome of Listeria monocytogenes serotype 4b str. CLIP 80459
type: Class
subclass of: genome of Listeria monocytogenes
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000568819
subclass of: Restriction
  on property: is genome of organism
  some values from: Listeria monocytogenes serotype 4b str. CLIP 80459
definition: The genome of an organism of Listeria monocytogenes serotype 4b str. CLIP 80459
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 568819

genome of Helicobacter pylori P12
type: Class
subclass of: genome of Helicobacter pylori
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000570508
subclass of: Restriction
  on property: is genome of organism
  some values from: Helicobacter pylori P12
definition: The genome of an organism of Helicobacter pylori P12
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 570508

genome of Escherichia coli O26:H11 str. 11368
type: Class
subclass of: genome of Escherichia coli
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000573235
subclass of: Restriction
  on property: is genome of organism
  some values from: Escherichia coli O26:H11 str. 11368
definition: The genome of an organism of Escherichia coli O26:H11 str. 11368
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 573235

genome of Escherichia coli O127:H6 str. E2348/69
type: Class
subclass of: genome of Escherichia coli
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000574521
subclass of: Restriction
  on property: is genome of organism
  some values from: Escherichia coli O127:H6 str. E2348/69
definition: The genome of an organism of Escherichia coli O127:H6 str. E2348/69
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 574521

genome of Vibrio cholerae M66-2
type: Class
subclass of: genome of Vibrio cholerae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000579112
subclass of: Restriction
  on property: is genome of organism
  some values from: Vibrio cholerae M66-2
definition: The genome of an organism of Vibrio cholerae M66-2
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 579112

genome of Escherichia coli IAI1
type: Class
subclass of: genome of Escherichia coli
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000585034
subclass of: Restriction
  on property: is genome of organism
  some values from: Escherichia coli IAI1
definition: The genome of an organism of Escherichia coli IAI1
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 585034

genome of Escherichia coli S88
type: Class
subclass of: genome of Escherichia coli
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000585035
subclass of: Restriction
  on property: is genome of organism
  some values from: Escherichia coli S88
definition: The genome of an organism of Escherichia coli S88
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 585035

genome of Escherichia coli 55989
type: Class
subclass of: genome of Escherichia coli
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000585055
subclass of: Restriction
  on property: is genome of organism
  some values from: Escherichia coli 55989
definition: The genome of an organism of Escherichia coli 55989
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 585055

genome of Escherichia coli UMN026
type: Class
subclass of: genome of Escherichia coli
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000585056
subclass of: Restriction
  on property: is genome of organism
  some values from: Escherichia coli UMN026
definition: The genome of an organism of Escherichia coli UMN026
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 585056

genome of Escherichia coli IAI39
type: Class
subclass of: genome of Escherichia coli
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000585057
subclass of: Restriction
  on property: is genome of organism
  some values from: Escherichia coli IAI39
definition: The genome of an organism of Escherichia coli IAI39
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 585057

genome of Escherichia coli O103:H2 str. 12009
type: Class
subclass of: genome of Escherichia coli
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000585395
subclass of: Restriction
  on property: is genome of organism
  some values from: Escherichia coli O103:H2 str. 12009
definition: The genome of an organism of Escherichia coli O103:H2 str. 12009
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 585395

genome of Escherichia coli O111:H- str. 11128
type: Class
subclass of: genome of Escherichia coli
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000585396
subclass of: Restriction
  on property: is genome of organism
  some values from: Escherichia coli O111:H- str. 11128
definition: The genome of an organism of Escherichia coli O111:H- str. 11128
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 585396

genome of Escherichia coli ED1a
type: Class
subclass of: genome of Escherichia coli
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000585397
subclass of: Restriction
  on property: is genome of organism
  some values from: Escherichia coli ED1a
definition: The genome of an organism of Escherichia coli ED1a
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 585397

genome of Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
type: Class
subclass of: genome of Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000588858
subclass of: Restriction
  on property: is genome of organism
  some values from: Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
definition: The genome of an organism of Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 588858

genome of Bacillus anthracis str. A0248
type: Class
subclass of: genome of Bacillus anthracis
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000592021
subclass of: Restriction
  on property: is genome of organism
  some values from: Bacillus anthracis str. A0248
definition: The genome of an organism of Bacillus anthracis str. A0248
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 592021

genome of Helicobacter pylori B38
type: Class
subclass of: genome of Helicobacter pylori
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000592205
subclass of: Restriction
  on property: is genome of organism
  some values from: Helicobacter pylori B38
definition: The genome of an organism of Helicobacter pylori B38
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 592205

genome of Escherichia coli BW2952
type: Class
subclass of: genome of Escherichia coli K-12
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000595496
subclass of: Restriction
  on property: is genome of organism
  some values from: Escherichia coli BW2952
definition: The genome of an organism of Escherichia coli BW2952
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 595496

genome of SARS coronavirus ExoN1
type: Class
subclass of: genome of Severe acute respiratory syndrome-related coronavirus
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000627440
subclass of: Restriction
  on property: is genome of organism
  some values from: SARS coronavirus ExoN1
definition: The genome of an organism of SARS coronavirus ExoN1
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 627440

genome of Listeria monocytogenes 08-5923
type: Class
subclass of: genome of Listeria monocytogenes
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000637381
subclass of: Restriction
  on property: is genome of organism
  some values from: Listeria monocytogenes 08-5923
definition: The genome of an organism of Listeria monocytogenes 08-5923
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 637381

genome of Listeria monocytogenes 08-5578
type: Class
subclass of: genome of Listeria monocytogenes
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000653938
subclass of: Restriction
  on property: is genome of organism
  some values from: Listeria monocytogenes 08-5578
definition: The genome of an organism of Listeria monocytogenes 08-5578
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 653938

genome of Neisseria meningitidis alpha14
type: Class
subclass of: genome of Neisseria meningitidis
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000662598
subclass of: Restriction
  on property: is genome of organism
  some values from: Neisseria meningitidis alpha14
definition: The genome of an organism of Neisseria meningitidis alpha14
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 662598

genome of Staphylococcus aureus subsp. aureus ED98
type: Class
subclass of: genome of Staphylococcus aureus subsp. aureus
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000681288
subclass of: Restriction
  on property: is genome of organism
  some values from: Staphylococcus aureus subsp. aureus ED98
definition: The genome of an organism of Staphylococcus aureus subsp. aureus ED98
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 681288

genome of Coronavirinae
type: Class
subclass of: genome of Nidovirales
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000693995
subclass of: Restriction
  on property: is genome of organism
  some values from: Coronavirinae
definition: The genome of an organism of Coronavirinae
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 693995

genome of Alphacoronavirus 1
type: Class
subclass of: genome of Coronavirinae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000693997
subclass of: Restriction
  on property: is genome of organism
  some values from: Alphacoronavirus 1
definition: The genome of an organism of Alphacoronavirus 1
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 693997

genome of Severe acute respiratory syndrome-related coronavirus
type: Class
subclass of: genome of Coronavirinae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000694009
subclass of: Restriction
  on property: is genome of organism
  some values from: Severe acute respiratory syndrome-related coronavirus
definition: The genome of an organism of Severe acute respiratory syndrome-related coronavirus
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 694009

genome of Human metapneumovirus CAN97-83
type: Class
subclass of: genome of Pneumovirinae
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000694067
subclass of: Restriction
  on property: is genome of organism
  some values from: Human metapneumovirus CAN97-83
definition: The genome of an organism of Human metapneumovirus CAN97-83
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 694067

genome of Mileewa branchiuma
type: Class
subclass of: genome of Bilateria
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000700720
subclass of: Restriction
  on property: is genome of organism
  some values from: Mileewa branchiuma
definition: The genome of an organism of Mileewa branchiuma
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 700720

genome of Staphylococcus aureus 04-02981
type: Class
subclass of: genome of Staphylococcus aureus
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000703339
subclass of: Restriction
  on property: is genome of organism
  some values from: Staphylococcus aureus 04-02981
definition: The genome of an organism of Staphylococcus aureus 04-02981
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 703339

genome of Mycoplasma gallisepticum str. R(low)
type: Class
subclass of: genome of Bacteria
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000710127
subclass of: Restriction
  on property: is genome of organism
  some values from: Mycoplasma gallisepticum str. R(low)
definition: The genome of an organism of Mycoplasma gallisepticum str. R(low)
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 710127

genome of saccharomyceta
type: Class
subclass of: genome of Dikarya
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000716545
subclass of: Restriction
  on property: is genome of organism
  some values from: saccharomyceta
definition: The genome of an organism of saccharomyceta
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 716545

genome of Legionella pneumophila 130b
type: Class
subclass of: genome of Legionella pneumophila serogroup 1
subclass of: Restriction
  on property: has_part
  some values from: OGG_2000866628
subclass of: Restriction
  on property: is genome of organism
  some values from: Legionella pneumophila 130b
definition: The genome of an organism of Legionella pneumophila 130b
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 866628

genome of Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74
type: Class
subclass of: genome of Salmonella enterica subsp. enterica serovar Typhimurium
definition: The genome of an organism of Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74
definition editor: Bin Zhao, Oliver He
organism NCBITaxon ID: 909946