format-version: 1.2
data-version: dev
date: 30:06:2015 19:06
saved-by: He Zhang
auto-generated-by: OBO-Edit 2.3
default-namespace: OMIT
remark: Filtered by Name equals \"Entity\" OR Ancestor Name equals \"Entity\" OR Is Property
import: http://purl.obolibrary.org/obo/iao/2015-02-23/ontology-metadata.owl
import: http://purl.obolibrary.org/obo/omit/dev/imports.owl
import: http://purl.obolibrary.org/obo/ncro/dev/ncro.owl
ontology: omit

[Term]
id: IAO:0000109
relationship: OMIT:0000101 OMIT:0000001 ! is_quality_measurement_of computationally_asserted_evidence

[Term]
id: NCRO:0000003 ! miRNA_and_target_gene_binding
relationship: OMIT:0000103 OMIT:0000001 ! miRNA_target_assumption_based_on computationally_asserted_evidence

[Term]
id: NCRO:0000025 ! miRNA_target_gene
relationship: OMIT:0000096 OMIT:0000006 ! has_gene_accession_number_in_NCBI_nucleotide information_from_NCBI_nucleotide
relationship: OMIT:0000098 OMIT:0000005 ! has_gene_symbol_in_NCBI_gene information_from_NCBI_gene
relationship: OMIT:0000100 OMIT:0000026 ! is_gene_template_of_protein target_protein

[Term]
id: OGMS:0000023
is_a: BFO:0000019 ! quality

[Term]
id: OMIT:0000001
name: computationally_asserted_evidence
is_a: IAO:0000030 ! information content entity

[Term]
id: OMIT:0000002
name: information_from_miRNA_target_prediction_databases
is_a: OMIT:0000001 ! computationally_asserted_evidence
relationship: RO:0000057 NCRO:0000025 ! miRNA_target_gene
relationship: RO:0000057 SO:0000276 ! miRNA

[Term]
id: OMIT:0000003
name: information_from_PubMed
is_a: IAO:0000030 ! information content entity
relationship: BFO:0000051 OMIT:0000030 ! has_part PubMed_id
relationship: BFO:0000051 OMIT:0000041 ! has_part PubMed_summary
relationship: RO:0000057 SO:0000276 ! miRNA

[Term]
id: OMIT:0000004
name: information_from_KEGG
is_a: IAO:0000030 ! information content entity

[Term]
id: OMIT:0000005
name: information_from_NCBI_gene
is_a: IAO:0000030 ! information content entity
relationship: BFO:0000051 OMIT:0000035 ! has_part PubMed_summary_in_NCBI_gene
relationship: BFO:0000051 OMIT:0000038 ! has_part miRNA_target_gene_symbol
relationship: BFO:0000051 OMIT:0000039 ! has_part summary_in_NCBI_gene
relationship: BFO:0000051 OMIT:0000040 ! has_part gene_id_in_NCBI_gene

[Term]
id: OMIT:0000006
name: information_from_NCBI_nucleotide
is_a: IAO:0000030 ! information content entity
relationship: BFO:0000051 OMIT:0000034 ! has_part accession_in_NCBI_nucleotide
relationship: BFO:0000051 OMIT:0000036 ! has_part fasta_in_NCBI_nucleotide
relationship: BFO:0000051 OMIT:0000037 ! has_part PubMed_in_NCBI_nucleotide

[Term]
id: OMIT:0000008
name: unclassified_terms
is_a: BFO:0000001 ! entity

[Term]
id: OMIT:0000009
name: gene_id_in_miRDB
is_a: IAO:0000030 ! information content entity
relationship: OMIT:0000097 OMIT:0000005 ! has_gene_id_in_NCBI_gene information_from_NCBI_gene

[Term]
id: OMIT:0000010
name: gene_transcript_id_in_miRDB
is_a: IAO:0000030 ! information content entity

[Term]
id: OMIT:0000011
name: target_score_in_miRDB
is_a: IAO:0000109

[Term]
id: OMIT:0000012
name: gene_three_prime_UTR_sequence_in_miRDB
is_a: IAO:0000030 ! information content entity

[Term]
id: OMIT:0000013
name: gene_transcript_id_in_TargetScan
is_a: IAO:0000030 ! information content entity

[Term]
id: OMIT:0000014
name: gene_context_score_in_TargetScan
is_a: IAO:0000109

[Term]
id: OMIT:0000015
name: mirSVR_score_in_miRanda
is_a: IAO:0000109

[Term]
id: OMIT:0000016
name: gene_miTG_score_in_DIANA_microT
is_a: IAO:0000109

[Term]
id: OMIT:0000017
name: mirSVR_score_in_DIANA_mirPath
is_a: IAO:0000109

[Term]
id: OMIT:0000018
name: methods_in_DIANA_TarBase
is_a: IAO:0000030 ! information content entity

[Term]
id: OMIT:0000019
name: prediction_from_TargetScan
is_a: OMIT:0000002 ! information_from_miRNA_target_prediction_databases
relationship: BFO:0000051 OMIT:0000013 ! has_part gene_transcript_id_in_TargetScan
relationship: BFO:0000051 OMIT:0000014 ! has_part gene_context_score_in_TargetScan

[Term]
id: OMIT:0000020
name: prediction_from_miRDB
is_a: OMIT:0000002 ! information_from_miRNA_target_prediction_databases
relationship: BFO:0000051 OMIT:0000009 ! has_part gene_id_in_miRDB
relationship: BFO:0000051 OMIT:0000010 ! has_part gene_transcript_id_in_miRDB
relationship: BFO:0000051 OMIT:0000011 ! has_part target_score_in_miRDB
relationship: BFO:0000051 OMIT:0000012 ! has_part gene_three_prime_UTR_sequence_in_miRDB

[Term]
id: OMIT:0000021
name: prediction_from_miRanda
is_a: OMIT:0000002 ! information_from_miRNA_target_prediction_databases
relationship: BFO:0000051 OMIT:0000015 ! has_part mirSVR_score_in_miRanda

[Term]
id: OMIT:0000022
name: prediction_from_DIANA_microT
is_a: OMIT:0000002 ! information_from_miRNA_target_prediction_databases
relationship: BFO:0000051 OMIT:0000016 ! has_part gene_miTG_score_in_DIANA_microT

[Term]
id: OMIT:0000023
name: prediction_from_DIANA_mirPath
is_a: OMIT:0000002 ! information_from_miRNA_target_prediction_databases
relationship: BFO:0000051 OMIT:0000017 ! has_part mirSVR_score_in_DIANA_mirPath

[Term]
id: OMIT:0000024
name: prediction_from_Diana_TarBase
is_a: OMIT:0000002 ! information_from_miRNA_target_prediction_databases
relationship: BFO:0000051 OMIT:0000018 ! has_part methods_in_DIANA_TarBase

[Term]
id: OMIT:0000026
name: target_protein
is_a: PR:000000001 ! protein
relationship: RO:0000085 GO:0003674 ! molecular_function
relationship: RO:0002331 GO:0008150 ! biological_process

[Term]
id: OMIT:0000028
name: miRNA_binding_site
is_a: SO_3000001 ! sequence
relationship: OBO_REL:part_of NCRO:0000025 ! miRNA_target_gene

[Term]
id: OMIT:0000030
name: PubMed_id
is_a: IAO:0000030 ! information content entity
creation_date: 2015-05-24T11:17:18Z

[Term]
id: OMIT:0000031
name: ensembl_gene_id_in_DIANA_microT
is_a: IAO:0000030 ! information content entity

[Term]
id: OMIT:0000032
name: KEGG_pathway_in_DIANA_mirPath
is_a: IAO:0000030 ! information content entity

[Term]
id: OMIT:0000033
name: p_value_in_DIANA_mirPath
is_a: IAO:0000030 ! information content entity

[Term]
id: OMIT:0000034
name: accession_in_NCBI_nucleotide
is_a: IAO:0000030 ! information content entity

[Term]
id: OMIT:0000035
name: PubMed_summary_in_NCBI_gene
is_a: OMIT:0000041 ! PubMed_summary

[Term]
id: OMIT:0000036
name: fasta_in_NCBI_nucleotide
is_a: IAO:0000030 ! information content entity

[Term]
id: OMIT:0000037
name: PubMed_in_NCBI_nucleotide
is_a: IAO:0000030 ! information content entity

[Term]
id: OMIT:0000038
name: miRNA_target_gene_symbol
is_a: IAO:0000030 ! information content entity

[Term]
id: OMIT:0000039
name: summary_in_NCBI_gene
is_a: IAO:0000030 ! information content entity

[Term]
id: OMIT:0000040
name: gene_id_in_NCBI_gene
is_a: IAO:0000030 ! information content entity

[Term]
id: OMIT:0000041
name: PubMed_summary
is_a: IAO:0000030 ! information content entity

[Term]
id: OMIT:0000043
name: Adipogenesis
is_a: OGMS:0000023

[Term]
id: OMIT:0000044
name: Anoikis
is_a: OGMS:0000023

[Term]
id: OMIT:0000045
name: Apoptosis
is_a: OGMS:0000023

[Term]
id: OMIT:0000046
name: Asymmetric cell division
is_a: OGMS:0000023

[Term]
id: OMIT:0000047
name: Autophagy
is_a: OGMS:0000023

[Term]
id: OMIT:0000048
name: Carcinogenesis
is_a: OGMS:0000023

[Term]
id: OMIT:0000049
name: Cell Adhesion
is_a: OGMS:0000023

[Term]
id: OMIT:0000050
name: Cell aggregation
is_a: OGMS:0000023

[Term]
id: OMIT:0000051
name: Cell cycle
is_a: OGMS:0000023

[Term]
id: OMIT:0000052
name: Cell cycle checkpoint
is_a: OGMS:0000023

[Term]
id: OMIT:0000053
name: Cell dedifferentiation
is_a: OGMS:0000023

[Term]
id: OMIT:0000054
name: Cell Differentiation
is_a: OGMS:0000023

[Term]
id: OMIT:0000055
name: Cell division
is_a: OGMS:0000023

[Term]
id: OMIT:0000056
name: Cell enlargement
is_a: OGMS:0000023

[Term]
id: OMIT:0000057
name: Cell migration
is_a: OGMS:0000023

[Term]
id: OMIT:0000058
name: Cell Polarity
is_a: OGMS:0000023

[Term]
id: OMIT:0000059
name: Cell Proliferation
is_a: OGMS:0000023

[Term]
id: OMIT:0000060
name: Cell transformation
is_a: OGMS:0000023

[Term]
id: OMIT:0000061
name: Chromosomal instability
is_a: OGMS:0000023

[Term]
id: OMIT:0000062
name: Chromosome aberration
is_a: OGMS:0000023

[Term]
id: OMIT:0000063
name: Circulating
is_a: OGMS:0000023

[Term]
id: OMIT:0000064
name: Contact inhibition
is_a: OGMS:0000023

[Term]
id: OMIT:0000065
name: Cytokinesis
is_a: OGMS:0000023

[Term]
id: OMIT:0000066
name: DNA break
is_a: OGMS:0000023

[Term]
id: OMIT:0000067
name: DNA cleavage
is_a: OGMS:0000023

[Term]
id: OMIT:0000068
name: DNA damage
is_a: OGMS:0000023

[Term]
id: OMIT:0000069
name: DNA degradation
is_a: OGMS:0000023

[Term]
id: OMIT:0000070
name: DNA methylation
is_a: OGMS:0000023

[Term]
id: OMIT:0000071
name: DNA repair
is_a: OGMS:0000023

[Term]
id: OMIT:0000072
name: Drug resistance
is_a: OGMS:0000023

[Term]
id: OMIT:0000073
name: Endocytosis
is_a: OGMS:0000023

[Term]
id: OMIT:0000074
name: Entosis
is_a: OGMS:0000023

[Term]
id: OMIT:0000075
name: Epithelial-Mesenchymal transition
is_a: OGMS:0000023

[Term]
id: OMIT:0000076
name: Glycolysis
is_a: OGMS:0000023

[Term]
id: OMIT:0000077
name: Infiltration
is_a: OGMS:0000023

[Term]
id: OMIT:0000078
name: Invasiveness
is_a: OGMS:0000023

[Term]
id: OMIT:0000079
name: Mesenchymal- Epithelial- transition
is_a: OGMS:0000023

[Term]
id: OMIT:0000080
name: Metastasis
is_a: OGMS:0000023

[Term]
id: OMIT:0000081
name: Methylation
is_a: OGMS:0000023

[Term]
id: OMIT:0000082
name: Mitochondrial degradation
is_a: OGMS:0000023

[Term]
id: OMIT:0000083
name: Mitochondrial dynamics
is_a: OGMS:0000023

[Term]
id: OMIT:0000084
name: Mitochondrial swelling
is_a: OGMS:0000023

[Term]
id: OMIT:0000085
name: Mitophagy
is_a: OGMS:0000023

[Term]
id: OMIT:0000086
name: Mitosis
is_a: OGMS:0000023

[Term]
id: OMIT:0000087
name: Mutagenesis
is_a: OGMS:0000023

[Term]
id: OMIT:0000088
name: Mutation
is_a: OGMS:0000023

[Term]
id: OMIT:0000089
name: Necrosis
is_a: OGMS:0000023

[Term]
id: OMIT:0000090
name: Oxygen Consumption
is_a: OGMS:0000023

[Term]
id: OMIT:0000091
name: Recurrence
is_a: OGMS:0000023

[Term]
id: OMIT:0000092
name: Regression
is_a: OGMS:0000023

[Term]
id: OMIT:0000093
name: Symmetric cell division
is_a: OGMS:0000023

[Term]
id: OMIT:0000094
name: Ubiquitylation
is_a: OGMS:0000023

[Term]
id: SO:0000336 ! pseudogene
relationship: OMIT:0000106 SO:0000704 ! non_functional_homolog_of gene

[Term]
id: SO_3000001
name: sequence
namespace: sequence
comment: This term was imported from the working version of the new SO, rather than from the published SO.
is_a: CHEBI:24431

[Typedef]
id: OMIT:0000095
name: gene_description
domain: SO:0000704 ! gene
range: xsd:string

[Typedef]
id: OMIT:0000096
name: has_gene_accession_number_in_NCBI_nucleotide
domain: NCRO:0000025 ! miRNA_target_gene
range: OMIT:0000006 ! information_from_NCBI_nucleotide

[Typedef]
id: OMIT:0000097
name: has_gene_id_in_NCBI_gene
domain: OMIT:0000009 ! gene_id_in_miRDB
range: OMIT:0000005 ! information_from_NCBI_gene

[Typedef]
id: OMIT:0000098
name: has_gene_symbol_in_NCBI_gene
domain: NCRO:0000025 ! miRNA_target_gene
range: OMIT:0000005 ! information_from_NCBI_gene

[Typedef]
id: OMIT:0000099
name: is_about_PubMed_id
domain: OMIT:0000003 ! information_from_PubMed
range: OMIT:0000030 ! PubMed_id
creation_date: 2015-05-25T15:47:49Z

[Typedef]
id: OMIT:0000100
name: is_gene_template_of_protein
domain: NCRO:0000025 ! miRNA_target_gene
range: OMIT:0000026 ! target_protein

[Typedef]
id: OMIT:0000101
name: is_quality_measurement_of
domain: IAO:0000109
range: OMIT:0000001 ! computationally_asserted_evidence

[Typedef]
id: OMIT:0000102
name: miRNA_name
domain: SO:0000276 ! miRNA
range: xsd:string

[Typedef]
id: OMIT:0000103
name: miRNA_target_assumption_based_on
domain: NCRO:0000003 ! miRNA_and_target_gene_binding
range: OMIT:0000001 ! computationally_asserted_evidence

[Typedef]
id: OMIT:0000104
name: has_subsequence
namespace: sequence
domain: SO_3000001 ! sequence
range: SO_3000001 ! sequence
is_transitive: true

[Typedef]
id: OMIT:0000105
name: homologous_to
namespace: sequence
is_symmetric: true
is_a: OMIT:0000107 ! similar_to

[Typedef]
id: OMIT:0000106
name: non_functional_homolog_of
namespace: sequence
is_a: OMIT:0000105 ! homologous_to
creation_date: 2013-10-14T17:18:10Z

[Typedef]
id: OMIT:0000107
name: similar_to
namespace: sequence
is_symmetric: true