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"comments": "Added via API (include_tree_in_synth) from \u00d5unap, E., Nedumpally, V., Yapar, E., Lemmon, A. R., & Tammaru, T. (2024). Molecular phylogeny of north European Geometridae (Lepidoptera: Geometroidea). Systematic Entomology, 50(1), 32\u201367. Portico. https://doi.org/10.1111/syen.12638\n",
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"comments": "Added via API (include_tree_in_synth) from Cao, Y., Dietrich, C. H., Dmitriev, D. A., Kits, J. H., Xue, Q., & Zhang, Y. (2024). Phylogeny, biogeography and morphological evolution of the treehopper\u2010like leafhoppers (Hemiptera: Cicadellidae) Megophthalminae and Ulopinae. Systematic Entomology, 50(2), 296\u2013308. Portico. https://doi.org/10.1111/syen.12655\n",
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"comments": "Added via API (include_tree_in_synth) from Luo, X., Deng, W., Han, W., Lo, N., Cai, J., Che, Y., & Wang, Z. (2025). Revision of the cockroach subfamily Blattinae based on morphological and molecular analyses. Systematic Entomology, 50(4), 836\u2013854. Portico. https://doi.org/10.1111/syen.12680\n",
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"comments": "Added via API (include_tree_in_synth) from HERREID, J. S., & HERATY, J. M. (2017). Hitchhikers at the dinner table: a revisionary study of a group of ant parasitoids (\n                    <scp>H</scp>\n                    ymenoptera:\n                    <scp>E</scp>\n                    ucharitidae) specializing in the use of extrafloral nectaries for host access. Systematic Entomology, 42(1), 204\u2013229. Portico. https://doi.org/10.1111/syen.12206\n",
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"comments": "Added via API (include_tree_in_synth) from LI, L., RASNITSYN, A. P., LABANDEIRA, C. C., SHIH, C., & REN, D. (2017). Phylogeny of\n                    <scp>S</scp>\n                    tephanidae (\n                    <scp>H</scp>\n                    ymenoptera:\n                    <scp>A</scp>\n                    pocrita) with a new genus from\n                    <scp>U</scp>\n                    pper\n                    <scp>C</scp>\n                    retaceous\n                    <scp>M</scp>\n                    yanmar amber. Systematic Entomology, 42(1), 194\u2013203. Portico. https://doi.org/10.1111/syen.12202\n",
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"comments": "Added via API (include_tree_in_synth) from Rokas, A. (2021). Editor\u2019s evaluation: Phylogenomic analyses of echinoid diversification prompt a re-evaluation of their fossil record. https://doi.org/10.7554/elife.72460.sa0\n",
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"comments": "Added via API (include_tree_in_synth) from Frolov\u00e1, P., Hork\u00e1, I., & \u010euri\u0161, Z. (2022). Molecular phylogeny and historical biogeography of marine palaemonid shrimps (Palaemonidae: Palaemonella\u2013Cuapetes group). Scientific Reports, 12(1). https://doi.org/10.1038/s41598-022-19372-5\n",
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"comments": "Added via API (include_tree_in_synth) from Stein, R. W., Mull, C. G., Kuhn, T. S., Aschliman, N. C., Davidson, L. N. K., Joy, J. B., Smith, G. J., Dulvy, N. K., & Mooers, A. O. (2018). Global priorities for conserving the evolutionary history of sharks, rays and chimaeras. Nature Ecology &amp; Evolution, 2(2), 288\u2013298. https://doi.org/10.1038/s41559-017-0448-4\n",
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"comments": "Added via API (include_tree_in_synth) from RIGHETTI, N., NICOLINI, F., FORNI, G., & LUCHETTI, A. (2025). Towards a time-tree solution for Branchiopoda diversification: a jackknife assessment of fossil age priors. Palaeoentomology, 8(3), 316\u2013328. https://doi.org/10.11646/palaeoentomology.8.3.8\n",
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"comments": "Added via API (include_tree_in_synth) from Colston, T. J., Kulkarni, P., Jetz, W., & Pyron, R. A. (2020). Phylogenetic and spatial distribution of evolutionary diversification, isolation, and threat in turtles and crocodilians (non-avian archosauromorphs). BMC Evolutionary Biology, 20(1). https://doi.org/10.1186/s12862-020-01642-3\n",
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"comments": "Added via API (include_tree_in_synth) from Ahmed, M., Roberts, N. G., Adediran, F., Smythe, A. B., Kocot, K. M., & Holovachov, O. (2022). Phylogenomic Analysis of the Phylum Nematoda: Conflicts and Congruences With Morphology, 18S rRNA, and Mitogenomes. Frontiers in Ecology and Evolution, 9. https://doi.org/10.3389/fevo.2021.769565\n",
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"comments": "Added via API (include_tree_in_synth) from Dor\u00e9, M., Borowiec, M. L., Branstetter, M. G., Camacho, G. P., Fisher, B. L., Longino, J. T., Ward, P. S., & Blaimer, B. B. (2025). Evolutionary history of ponerine ants highlights how the timing of dispersal events shapes modern biodiversity. Nature Communications, 16(1). https://doi.org/10.1038/s41467-025-63709-3\n",
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"comments": "Added via API (include_tree_in_synth) from Leslie, A. B., Beaulieu, J., Holman, G., Campbell, C. S., Mei, W., Raubeson, L. R., & Mathews, S. (2018). An overview of extant conifer evolution from the perspective of the fossil record. American Journal of Botany, 105(9), 1531\u20131544. Portico. https://doi.org/10.1002/ajb2.1143\n",
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"comments": "Added via API (include_tree_in_synth) from Newton AF (1997) Review of Agyrtidae (coleoptera), with a New Genus and species from New Zealand. Annales Zoologici, 47(1):111-156.",
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"comments": "Added via API (include_tree_in_synth) from PETERS, M. J., & MARCUS, J. M. (2016). Taxonomy as a hypothesis: testing the status of the Bermuda buckeye butterfly\n                    Junonia coenia bergi\n                    (Lepidoptera: Nymphalidae). Systematic Entomology, 42(1), 288\u2013300. Portico. https://doi.org/10.1111/syen.12214\n",
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{
"SHA": "",
"comments": "Added via API (include_tree_in_synth) from Orr, R. J. S., Di Martino, E., Ramsfjell, M. H., Gordon, D. P., Berning, B., Chowdhury, I., Craig, S., Cumming, R. L., Figuerola, B., Florence, W., Harmelin, J.-G., Hirose, M., Huang, D., Jain, S. S., Jenkins, H. L., Kotenko, O. N., Kuklinski, P., Lee, H. E., Madurell, T., \u2026 Liow, L. H. (2022). Paleozoic origins of cheilostome bryozoans and their parental care inferred by a new genome-skimmed phylogeny. Science Advances, 8(13). https://doi.org/10.1126/sciadv.abm7452\n",
"decision": "INCLUDED",
"name": "TRIMMED (Fig. 2)",
"studyID": "ot_3052",
"treeID": "tree2"
},
{
"SHA": "",
"comments": "Added via API (include_tree_in_synth) from Qing, X., Zhang, Y. M., Sun, S., Ahmed, M., Lo, W.-S., Bert, W., Holovachov, O., & Li, H. (2024). Phylogenomic Insights into the Evolution and Origin of Nematoda. Systematic Biology, 74(3), 349\u2013358. https://doi.org/10.1093/sysbio/syae073\n",
"decision": "INCLUDED",
"name": "Nem_50p_aa_MCMCresult.tree",
"studyID": "ot_3053",
"treeID": "tree2"
},
{
"SHA": "",
"comments": "Added via API (include_tree_in_synth) from RIGHETTI, N., NICOLINI, F., FORNI, G., & LUCHETTI, A. (2025). Towards a time-tree solution for Branchiopoda diversification: a jackknife assessment of fossil age priors. Palaeoentomology, 8(3), 316\u2013328. https://doi.org/10.11646/palaeoentomology.8.3.8\n",
"decision": "INCLUDED",
"name": "FINAL_calibrated_tree.nexus",
"studyID": "ot_3061",
"treeID": "tree4"
},
{
"SHA": "",
"comments": "Added via API (include_tree_in_synth) from Thomas Thorpe, J. A. (2024). Phylogenomics supports a single origin of terrestriality in isopods. Proceedings of the Royal Society B: Biological Sciences, 291(2033). https://doi.org/10.1098/rspb.2024.1042\n",
"decision": "INCLUDED",
"name": "Isopoda.edit20.Oniscidates.SubM.LogNrml.mcc.tree",
"studyID": "ot_3119",
"treeID": "tree1"
}
],
"description": "Trees for synthesis, but ranked lower than other synthesis collections",
"name": "Inputs to synthesis (default)",
"queries": []
}