{ "contributors": [ { "login": "quattrinia", "name": "quattrinia" }, { "login": "reimerj", "name": "James Davis Reimer" }, { "login": "L-Leclere", "name": "L-Leclere" }, { "login": "snacktavish", "name": "Emily Jane McTavish" }, { "login": "marymegandaly", "name": "marymegandaly" }, { "login": "Tesserazoa", "name": "Tesserazoa" }, { "login": "mndawson", "name": "mndawson" }, { "login": "mtholder", "name": "Mark T. Holder" }, { "login": "csmcfadden", "name": "Catherine McFadden" }, { "login": "juansanc", "name": "juansanc" } ], "creator": { "login": "pcart", "name": "pcart" }, "decisions": [ { "SHA": "", "comments": "Cnidaria backbone with stauro and cerianthid", "decision": "INCLUDED", "name": "FullMatrix (Felipe Zapata, 2015)", "studyID": "ot_895", "treeID": "tree2" }, { "SHA": "", "comments": "", "decision": "INCLUDED", "name": "Better Taxonomy summary (Chang E.S., 2015)", "studyID": "ot_519", "treeID": "tree2" }, { "SHA": "", "comments": "myxozoa backbone", "decision": "INCLUDED", "name": "Bayesian CAT Model (Chang E.S., 2015)", "studyID": "ot_519", "treeID": "Tr88326" }, { "SHA": "", "comments": "octocoral backbone", "decision": "INCLUDED", "name": "bestREP3 (Catherine McFadden, 2013)", "studyID": "ot_896", "treeID": "tree1" }, { "SHA": "", "comments": "", "decision": "INCLUDED", "name": "SSU & LSU Combined ML (Bentlage B. , 2010)", "studyID": "pg_1951", "treeID": "tree3975" }, { "SHA": "", "comments": "", "decision": "INCLUDED", "name": "Rod et al hexos (Estefan\u00eda Rodr\u00edguez, 2014)", "studyID": "ot_930", "treeID": "tree3" }, { "SHA": "", "comments": "Cubozoa backbone", "decision": "INCLUDED", "name": "Cubozoa (tree3974) (Bentlage B. , 2010)", "studyID": "pg_1951", "treeID": "tree3974" }, { "SHA": "", "comments": "As of this date, it's the best backbone for the Class", "decision": "INCLUDED", "name": "Scyphozoa_Bayha&c2010_18S28S_Tree04 (K. M. Bayha, 2010)", "studyID": "ot_932", "treeID": "tree6" }, { "SHA": "", "comments": "", "decision": "INCLUDED", "name": "Combined_ML_tree (Miranda L.S., 2016)", "studyID": "ot_942", "treeID": "Tr94692" }, { "SHA": "", "comments": "Trachylina backbone", "decision": "INCLUDED", "name": "Trachylina Combined 2008 (Allen G. Collins, 2008)", "studyID": "ot_929", "treeID": "tree1" }, { "SHA": "", "comments": "", "decision": "INCLUDED", "name": "ML - Hydroidollina (tree6257) (Cartwright, 2008)", "studyID": "pg_1786", "treeID": "tree6257" }, { "SHA": "", "comments": "This is the best backbone for Zoantharia", "decision": "INCLUDED", "name": "Zoantharia ITS+28S+12S+16S ML (Swain 2016) (Swain T.D., 2016)", "studyID": "ot_924", "treeID": "Tr97534" }, { "SHA": "", "comments": "Scleractinia molecular supertree (~450 spp.)", "decision": "INCLUDED", "name": "Scleractinia (Huang & Roy 2011) (Huang, 2013)", "studyID": "pg_1761", "treeID": "tree6151" }, { "SHA": "", "comments": "", "decision": "INCLUDED", "name": "Myxosporea (tree5206) (Bartosova P., 2009)", "studyID": "pg_2445", "treeID": "tree5206" }, { "SHA": "", "comments": "", "decision": "INCLUDED", "name": "Herrera_Paragorgiidae (Santiago Herrera, 2016)", "studyID": "ot_938", "treeID": "tree1" }, { "SHA": "", "comments": "", "decision": "INCLUDED", "name": "Leptothecata 16s18s28s ML (Lucas Leclere, 2009)", "studyID": "pg_1785", "treeID": "tree6248" }, { "SHA": "", "comments": "", "decision": "INCLUDED", "name": "Leptothecata ML 16S18S28S_Nrw4 (Maximiliano M. Maronna, 2016)", "studyID": "ot_714", "treeID": "tree2" }, { "SHA": "", "comments": "naked coral tree", "decision": "INCLUDED", "name": "nt partitioned gene raxml (Mei Fang Lin, 2016)", "studyID": "ot_944", "treeID": "tree1" }, { "SHA": "", "comments": "siphonophores", "decision": "INCLUDED", "name": "Untitled (tree6534) (Dunn, 2005)", "studyID": "pg_1788", "treeID": "tree6534" }, { "SHA": "", "comments": "Adds Nanozoanthidae + Abyssoanthidae to Zoantharia.", "decision": "INCLUDED", "name": "16S (Nano + Abyyso) Bayes (Fujii & Reimer 2013) (Takuma Fujii, 2013)", "studyID": "ot_957", "treeID": "tree1" }, { "SHA": "", "comments": "Epiactis", "decision": "INCLUDED", "name": "tree 1 (Larson P., 2015)", "studyID": "ot_729", "treeID": "Tr90969" }, { "SHA": "", "comments": "Caribbean gorgonians", "decision": "INCLUDED", "name": "con 50 majrule (Johanna Vel\u00e1squez, 2015)", "studyID": "ot_949", "treeID": "tree1" }, { "SHA": "", "comments": "Adds Microzoanthdae to Zoantharia.", "decision": "INCLUDED", "name": "Zoantharia (Microzoanthidae) COI ML (Fujii & Reimer 2011) (Fujii T, 2011)", "studyID": "ot_933", "treeID": "tree2" }, { "SHA": "", "comments": "Octocorallia: Alcyoniidae: Sinularia", "decision": "INCLUDED", "name": "Sinularia (Benayahu Y, 2013)", "studyID": "ot_947", "treeID": "tree1" }, { "SHA": "", "comments": "all 18s from Hydroidolina added Platacnidae and Protohydra", "decision": "INCLUDED", "name": "tree 1 (SOFIA V. PYATAEVA, 2016)", "studyID": "ot_954", "treeID": "tree1" }, { "SHA": "", "comments": "Octocorallia,family Alcyoniidae", "decision": "INCLUDED", "name": "Cladiella+Klyxum (Benayahu Y, 2013)", "studyID": "ot_947", "treeID": "tree3" }, { "SHA": "", "comments": "Best Parazoanthidae tree, includes Bergia, Umimayanthus, and genera described in Sinniger et al. 2013", "decision": "INCLUDED", "name": "Parazoanthidae 18S+28S+ITS+16S+COI ML (Montenegro et al. 2015) (Javier Montenegro, 2015)", "studyID": "ot_981", "treeID": "tree1" }, { "SHA": "", "comments": "Octocorallia: Alcyoniidae", "decision": "INCLUDED", "name": "Sarcophyton+Lobophytum (Benayahu Y, 2013)", "studyID": "ot_947", "treeID": "tree2" }, { "SHA": "", "comments": "Distinguishes two of the species within the family", "decision": "INCLUDED", "name": "Drymonematidae_Baya & Dawson (2010) (Bayha K.M., 2010)", "studyID": "pg_1947", "treeID": "tree3965" }, { "SHA": "", "comments": "Adds Atlantic spp. of clades already in tree, particularly Sphenopidae, Zoanthidae, Parazoanthidae.", "decision": "INCLUDED", "name": "Zoantharia 16S + COI ML tree (Santos 2015) (Maria Eduarda Alves Santos, 2015)", "studyID": "ot_925", "treeID": "tree1" }, { "SHA": "", "comments": "Octocorallia: Xeniidae", "decision": "INCLUDED", "name": "Xeniidae mt+28S (Michael Janes, 2014)", "studyID": "ot_960", "treeID": "tree1" }, { "SHA": "", "comments": "Octocorallia: Keratoisidinae", "decision": "INCLUDED", "name": "Keratoisidinae (Luisa F. Due\u00f1as, 2014)", "studyID": "ot_956", "treeID": "tree1" }, { "SHA": "", "comments": "", "decision": "INCLUDED", "name": "Plumularioidea ML 16S (Lucas Lecl\u00e8re, 2007)", "studyID": "ot_900", "treeID": "tree1" }, { "SHA": "", "comments": "", "decision": "INCLUDED", "name": "Quattrini_MolEcol_MutSCOI28S (Andrea M. Quattrini, 2013)", "studyID": "ot_984", "treeID": "tree1" }, { "SHA": "", "comments": "", "decision": "INCLUDED", "name": "18S stampar 2014 (S\u00e9rgio N. Stampar, 2014)", "studyID": "ot_985", "treeID": "tree1" }, { "SHA": "", "comments": "Octocorallia: Corallidae", "decision": "INCLUDED", "name": "Corallidae (N\u00e9stor E Ardila, 2012)", "studyID": "ot_983", "treeID": "tree1" }, { "SHA": "", "comments": "", "decision": "INCLUDED", "name": "Combined 16S, COI, 18S and 28S Parsimony (Amanda F. Cunha, 2017)", "studyID": "ot_898", "treeID": "tree1" }, { "SHA": "", "comments": "", "decision": "INCLUDED", "name": "bestREP5 (Amanda F. Cunha, 2017)", "studyID": "ot_898", "treeID": "tree3" }, { "SHA": "", "comments": "", "decision": "INCLUDED", "name": "bestREP7 (Amanda F. Cunha, 2017)", "studyID": "ot_898", "treeID": "tree2" }, { "SHA": "", "comments": "Umimayanthus (Parazoanthidae) in detail.", "decision": "INCLUDED", "name": "Detailed ITS ML (Montenegro et al. 2015MPE) (Javier Montenegro, 2015)", "studyID": "ot_982", "treeID": "tree4" }, { "SHA": "", "comments": "", "decision": "INCLUDED", "name": "Radice_Paramuricea_MutSCOI28S (Veronica Z. Radice, 2016)", "studyID": "ot_989", "treeID": "tree1" }, { "SHA": "", "comments": "Most complete tree for genus Aurelia.", "decision": "INCLUDED", "name": "Dawson&c2005 Fig1 rDNA ML (M. N Dawson, 2005)", "studyID": "ot_990", "treeID": "tree2" }, { "SHA": "", "comments": "", "decision": "INCLUDED", "name": "Stylasteridae ML 92Taxa-total evidence (Stefania Puce, 2016)", "studyID": "ot_964", "treeID": "tree2" }, { "SHA": "", "comments": "", "decision": "INCLUDED", "name": "Hydra Fig3-COI 16S EF1a 28S Beast (Martin Schwentner, 2015)", "studyID": "ot_965", "treeID": "tree1" } ], "description": "", "name": "Cnidaria", "queries": [] }