Library	Species	GC	N50	L50	MLST_Allele_Profile	MLST_Seq_Type	SeroProf	ClermontPhylotype	FimType	VirFactorCount	VirFactorList	AqResGeneCount	AqResGeneList	MutResGeneCount	PlasCount	PlasList	MLST_Loc_1	MLST_Loc1_ID	MLST_Loc1_Cov	MLST_Loc1_Allele	MLST_Loc_2	MLST_Loc2_ID	MLST_Loc2_Cov	MLST_Loc2_Allele	MLST_Loc_3	MLST_Loc3_ID	MLST_Loc3_Cov	MLST_Loc3_Allele	MLST_Loc_4	MLST_Loc4_ID	MLST_Loc4_Cov	MLST_Loc4_Allele	MLST_Loc_5	MLST_Loc5_ID	MLST_Loc5_Cov	MLST_Loc5_Allele	MLST_Loc_6	MLST_Loc6_ID	MLST_Loc6_Cov	MLST_Loc6_Allele	MLST_Loc_7	MLST_Loc7_ID	MLST_Loc7_Cov	MLST_Loc7_Allele	Serotype1	Serotype2	Serotype3	Antigen1	Antigen1ID	Antigen1_Temp_HSP_Len	Antigen2	Antigen2ID	Antigen2_Temp_HSP_Len	Antigen3	Antigen3ID	Antigen3_Temp_HSP_Len	VirFactor1	VirID1	VirQ_T_Len1	VirContig1	VirContig1Pos	VirProtFunc1	VirAccNo1	VirFactor2	VirID2	VirQ_T_Len2	VirContig2	VirContig2Pos	VirProtFunc2	VirAccNo2	VirFactor3	VirID3	VirQ_T_Len3	VirContig3	VirContig3Pos	VirProtFunc3	VirAccNo3	VirFactor4	VirID4	VirQ_T_Len4	VirContig4	VirContig4Pos	VirProtFunc4	VirAccNo4	VirFactor5	VirID5	VirQ_T_Len5	VirContig5	VirContig5Pos	VirProtFunc5	VirFactor6	VirID6	VirQ_T_Len6	VirContig6	VirContig6Pos	VirProtFunc6	VirAccNo6	VirFactor7	VirID7	VirQ_T_Len7	VirContig7	VirContig7Pos	VirProtFunc7	VirAccNo7	VirFactor8	VirID8	VirQ_T_Len8	VirContig8	VirContig8Pos	VirProtFunc8	VirAccNo8	VirFactor9	VirID9	VirQ_T_Len9	VirContig9	VirContig9Pos	VirProtFunc9	VirAccNo9	VirFactor10	VirID10	VirQ_T_Len10	VirContig10	VirContig10Pos	VirProtFunc10	VirAccNo10	VirFactor11	VirID11	VirQ_T_Len11	VirContig11	VirContig11Pos	VirProtFunc11	VirAccNo11	VirFactor12	VirID12	VirQ_T_Len12	VirContig12	VirContig12Pos	VirProtFunc12	VirAccNo12	VirFactor13	VirID13	VirQ_T_Len13	VirContig13	VirContig13Pos	VirProtFunc13	VirAccNo13	VirFactor14	VirID14	VirQ_T_Len14	VirContig14	VirContig14Pos	VirProtFunc14	VirAccNo14	VirFactor15	VirID15	VirQ_T_Len15	VirContig15	VirContig15Pos	VirProtFunc15	VirAccNo15	VirFactor16	VirID16	VirQ_T_Len16	VirContig16	VirContig16Pos	VirProtFunc16	VirAccNo16	VirFactor17	VirID17	VirQ_T_Len17	VirContig17	VirContig17Pos	VirProtFunc17	VirAccNo17	VirFactor18	VirID18	VirQ_T_Len18	VirContig18	VirContig18Pos	VirProtFunc18	VirAccNo18	ResGene1	ResID1	ResQ_T_Len1	ResContig1	ResContig1Pos	ResPredPheno1	ResAccNo1	ResGene2	ResID2	ResQ_T_Len2	ResContig2	ResContig2Pos	ResPredPheno2	ResAccNo2	PlasDB1	Plas1	PlasID1	PlasQ_T_Len1	PlasContig1	PlasContig1Pos	PlasAccNo1	PlasDB2	Plas2	PlasID2	PlasQ_T_Len2	PlasContig2	PlasContig2Pos	PlasAccNo2	PlasDB3	Plas3	PlasID3	PlasQ_T_Len3	PlasContig3	PlasContig3Pos	PlasAccNo3
GCF_029433975.1_ASM2943397v1_genomic.fna	Escherichia_coli	0.5071	94.912 KB	17	adk_6,fumC_4,gyrB_1,icd_95,mdh_69,purA_8,recA_2	2606	30:13/129:13/129/135	A	FimH34	13	clpK1,clpK2,csgA,fimH,fimH,gad,gad,iss,lpfA,lpfA,nlpI,terC,terC,yehA,yehB,yehC,yehD	0		0	3	Col(pHAD28),IncHI1A,IncHI1B(R27)	adk	100	100	adk_6	fumC	100	100	fumC_4	gyrB	100	100	gyrB_1	icd	100	100	icd_95	mdh	100	100	mdh_69	purA	100	100	purA_8	recA	100	100	recA_2	30	13/129	13/129/135	H_fliC	99.94	1713 / 1713	O1_wzx	100	1257 / 1257	O2_wzy	100	1149 / 1149	clpK1	99.93	2883 / 2883	NZ_JANILT010000077.1 Escherichia coli strain CE158 NODE_77_length_9681_cov_20.467712_pilon, whole genome shotgun sequence	3098..5980	heat shock survival AAA family ATPase ClpK. thermal stress survival	WP_053271808	clpK2	100	2823 / 2862	NZ_JANILT010000052.1 Escherichia coli strain CE158 NODE_52_length_26717_cov_17.795009_pilon, whole genome shotgun sequence	17302..20124	heat shock survival AAA family ATPase ClpK. thermal stress survival	ARJ57694	csgA	99.78	456 / 456	NZ_JANILT010000004.1 Escherichia coli strain CE158 NODE_4_length_181205_cov_18.891935_pilon, whole genome shotgun sequence	8874..9329	curlin major subunit CsgA	CP069646	fimH	100	489 / 489	NZ_JANILT010000038.1 Escherichia coli strain CE158 NODE_38_length_45496_cov_24.783100_pilon, whole genome shotgun sequence	5891..6379	Type 1 fimbriae		fimH	100	489 / 489	NZ_JANILT010000038.1 Escherichia coli strain CE158 NODE_38_length_45496_cov_24.783100_pilon, whole genome shotgun sequence	5891..6379	Type 1 fimbriae	gad	99.93	1401 / 1401	NZ_JANILT010000029.1 Escherichia coli strain CE158 NODE_29_length_58172_cov_18.931090_pilon, whole genome shotgun sequence	37629..39029	Glutamate decarboxylase	AP009240	gad	99.93	1401 / 1401	NZ_JANILT010000013.1 Escherichia coli strain CE158 NODE_13_length_102683_cov_27.765501_pilon, whole genome shotgun sequence	1126..2526	Glutamate decarboxylase	AP010953	iss	100	294 / 294	NZ_JANILT010000073.1 Escherichia coli strain CE158 NODE_73_length_11674_cov_20.555738_pilon, whole genome shotgun sequence	10296..10589	Increased serum survival	CP001665	lpfA	99.83	573 / 573	NZ_JANILT010000018.1 Escherichia coli strain CE158 NODE_18_length_94307_cov_26.985530_pilon, whole genome shotgun sequence, rose (repression of heat shock gene expression) occurs in the 5'-region of heat shock genes and acts as an rna thermometer to modulate expression	30310..30882	Long polar fimbriae	AP010953	lpfA	99.83	573 / 573	NZ_JANILT010000018.1 Escherichia coli strain CE158 NODE_18_length_94307_cov_26.985530_pilon, whole genome shotgun sequence, rose (repression of heat shock gene expression) occurs in the 5'-region of heat shock genes and acts as an rna thermometer to modulate expression	30310..30882	Long polar fimbriae	CP002185	nlpI	99.77	885 / 885	NZ_JANILT010000047.1 Escherichia coli strain CE158 NODE_47_length_32916_cov_24.071361_pilon, whole genome shotgun sequence	19863..20747	lipoprotein NlpI precursor	CP000243	terC	98.88	714 / 714	NZ_JANILT010000022.1 Escherichia coli strain CE158 NODE_22_length_86802_cov_23.471468_pilon, whole genome shotgun sequence	64131..64844	Tellurium ion resistance protein	CP007491	terC	99.27	959 / 966	NZ_JANILT010000016.1 Escherichia coli strain CE158 NODE_16_length_95270_cov_24.017192_pilon, whole genome shotgun sequence	47181..48139	Tellurium ion resistance protein	MG591698	yehA	98.65	1035 / 1035	NZ_JANILT010000002.1 Escherichia coli strain CE158 NODE_2_length_290436_cov_20.580215_pilon, whole genome shotgun sequence	284147..285181	Outer membrane lipoprotein, YHD fimbriael cluster	CP042934	yehB	98.79	2481 / 2481	NZ_JANILT010000002.1 Escherichia coli strain CE158 NODE_2_length_290436_cov_20.580215_pilon, whole genome shotgun sequence	281651..284131	Usher, YHD fimbriael cluster	CP042934	yehC	97.78	675 / 675	NZ_JANILT010000002.1 Escherichia coli strain CE158 NODE_2_length_290436_cov_20.580215_pilon, whole genome shotgun sequence	280961..281635	Chaperone, YHD fimbriael cluster	CP042934	yehD	98.71	543 / 543	NZ_JANILT010000002.1 Escherichia coli strain CE158 NODE_2_length_290436_cov_20.580215_pilon, whole genome shotgun sequence	280339..280881	Major pilin subunit, YHD fimbriael cluster	CP042934																						enterobacteriales	Col(pHAD28)	91.6	131 / 131	NZ_JANILT010000108.1 Escherichia coli strain CE158 NODE_109_length_2296_cov_1.236156_pilon, whole genome shotgun sequence	377..507	KU674895	enterobacteriales	IncHI1A	99.76	420 / 420	NZ_JANILT010000084.1 Escherichia coli strain CE158 NODE_84_length_7141_cov_18.489474_pilon, whole genome shotgun sequence	664..1083	AF250878	enterobacteriales	IncHI1B(R27)	100	540 / 540	NZ_JANILT010000065.1 Escherichia coli strain CE158 NODE_65_length_16172_cov_18.309943_pilon, whole genome shotgun sequence	13350..13889	AF250878
GCF_029434035.1_ASM2943403v1_genomic.fna	Escherichia_coli	0.5067	221.033 KB	8	adk_10,fumC_4,gyrB_4,icd_83,mdh_8,purA_8,recA_6	Unknown	12:21:21	C	FimH23	16	cba,clpK2,cma,csgA,fimH,gad,gad,hlyE,mrkA,nlpI,terC,terC,traJ,traT,yehA,yehB,yehC,yehD	2	aadA1,dfrA1	0	3	Col(pHAD28),IncFII,IncX1	adk	100	100	adk_10	fumC	100	100	fumC_4	gyrB	100	100	gyrB_4	icd	100	100	icd_83	mdh	100	100	mdh_8	purA	100	100	purA_8	recA	100	100	recA_6	12	21	21	H_fliC	100	1788 / 1788	O1_wzx	99.76	1236 / 1236	O2_wzy	100	1083 / 1083	cba	100	1536 / 1536	NZ_JANILU010000016.1 Escherichia coli strain CE156 NODE_16_length_125595_cov_20.192423_pilon, whole genome shotgun sequence	10249..11784	Colicin B	FJ664724	clpK2	100	2823 / 2862	NZ_JANILU010000016.1 Escherichia coli strain CE156 NODE_16_length_125595_cov_20.192423_pilon, whole genome shotgun sequence	29795..32617	heat shock survival AAA family ATPase ClpK. thermal stress survival	ARJ57694	cma	100	816 / 816	NZ_JANILU010000016.1 Escherichia coli strain CE156 NODE_16_length_125595_cov_20.192423_pilon, whole genome shotgun sequence	12572..13387	Colicin M activity	FJ664737	csgA	99.78	456 / 456	NZ_JANILU010000002.1 Escherichia coli strain CE156 NODE_2_length_433505_cov_24.127953_pilon, whole genome shotgun sequence, trp leader region	6897..7352	curlin major subunit CsgA	CP069646	fimH	100	489 / 489	NZ_JANILU010000028.1 Escherichia coli strain CE156 NODE_28_length_44348_cov_32.864299_pilon, whole genome shotgun sequence	24797..25285	Type 1 fimbriae	gad	100	1401 / 1401	NZ_JANILU010000026.1 Escherichia coli strain CE156 NODE_26_length_52942_cov_23.870398_pilon, whole genome shotgun sequence	37434..38834	Glutamate decarboxylase	AP009240	gad	100	1401 / 1401	NZ_JANILU010000004.1 Escherichia coli strain CE156 NODE_4_length_321466_cov_35.196997_pilon, whole genome shotgun sequence	219819..221219	Glutamate decarboxylase	AP010953	hlyE	98.04	918 / 918	NZ_JANILU010000002.1 Escherichia coli strain CE156 NODE_2_length_433505_cov_24.127953_pilon, whole genome shotgun sequence, trp leader region	116736..117641	Avian E. coli haemolysin	ECU57430	mrkA	96.26	615 / 597	NZ_JANILU010000016.1 Escherichia coli strain CE156 NODE_16_length_125595_cov_20.192423_pilon, whole genome shotgun sequence	71741..72355	type 3 fimbrial major subunit	ABW83989	nlpI	99.77	885 / 885	NZ_JANILU010000011.1 Escherichia coli strain CE156 NODE_11_length_165360_cov_31.383028_pilon, whole genome shotgun sequence	57235..58119	lipoprotein NlpI precursor	CP000243	terC	99.02	714 / 714	NZ_JANILU010000003.1 Escherichia coli strain CE156 NODE_3_length_368116_cov_31.453988_pilon, whole genome shotgun sequence	66514..67227	Tellurium ion resistance protein	CP007491	terC	99.27	959 / 966	NZ_JANILU010000003.1 Escherichia coli strain CE156 NODE_3_length_368116_cov_31.453988_pilon, whole genome shotgun sequence	360726..361684	Tellurium ion resistance protein	MG591698	traJ	98.55	690 / 690	NZ_JANILU010000016.1 Escherichia coli strain CE156 NODE_16_length_125595_cov_20.192423_pilon, whole genome shotgun sequence	113418..114107	Protein TraJ (Positive regulator of conjugal transfer operon)	AF550679	traT	100	732 / 732	NZ_JANILU010000016.1 Escherichia coli strain CE156 NODE_16_length_125595_cov_20.192423_pilon, whole genome shotgun sequence	91201..91932	Outer membrane protein complement resistance	CXZR01000026	yehA	97.97	1035 / 1035	NZ_JANILU010000001.1 Escherichia coli strain CE156 NODE_1_length_566676_cov_25.465309_pilon, whole genome shotgun sequence	449789..450823	Outer membrane lipoprotein, YHD fimbriael cluster	CP042934	yehB	97.58	2481 / 2481	NZ_JANILU010000001.1 Escherichia coli strain CE156 NODE_1_length_566676_cov_25.465309_pilon, whole genome shotgun sequence	450839..453309	Usher, YHD fimbriael cluster	CP042934	yehC	97.93	675 / 675	NZ_JANILU010000001.1 Escherichia coli strain CE156 NODE_1_length_566676_cov_25.465309_pilon, whole genome shotgun sequence	453325..453999	Chaperone, YHD fimbriael cluster	CP042934	yehD	98.53	543 / 543	NZ_JANILU010000001.1 Escherichia coli strain CE156 NODE_1_length_566676_cov_25.465309_pilon, whole genome shotgun sequence	454079..454621	Major pilin subunit, YHD fimbriael cluster	CP042934	aadA1	100	789/789	NZ_JANILU010000008.1 Escherichia coli strain CE156 NODE_8_length_221033_cov_36.232765_pilon, whole genome shotgun sequence, rose (repression of heat shock gene expression) occurs in the 5'-region of heat shock genes and acts as an rna thermometer to modulate expression	40079..40867	Spectinomycin, Streptomycin	JQ480156	dfrA1	100	474/474	NZ_JANILU010000008.1 Escherichia coli strain CE156 NODE_8_length_221033_cov_36.232765_pilon, whole genome shotgun sequence, rose (repression of heat shock gene expression) occurs in the 5'-region of heat shock genes and acts as an rna thermometer to modulate expression	41544..42017	Trimethoprim	X00926	enterobacteriales	Col(pHAD28)	91.6	131 / 131	NZ_JANILU010000054.1 Escherichia coli strain CE156 NODE_55_length_2221_cov_0.964455_pilon, whole genome shotgun sequence	927..1057	KU674895	enterobacteriales	IncFII	100	261 / 261	NZ_JANILU010000016.1 Escherichia coli strain CE156 NODE_16_length_125595_cov_20.192423_pilon, whole genome shotgun sequence	79372..79632	AY458016	enterobacteriales	IncX1	98.93	374 / 374	NZ_JANILU010000016.1 Escherichia coli strain CE156 NODE_16_length_125595_cov_20.192423_pilon, whole genome shotgun sequence	58906..59279	EU370913
GCF_029434335.1_ASM2943433v1_genomic.fna	Escherichia_coli	0.5067	204.946 KB	7	adk_10,fumC_4,gyrB_4,icd_83,mdh_8,purA_8,recA_6	Unknown	12:21:21	C	FimH23	16	cba,clpK2,cma,csgA,fimH,gad,gad,hlyE,mrkA,nlpI,terC,terC,traJ,traT,yehA,yehB,yehC,yehD	2	aadA1,dfrA1	0	2	IncFII,IncX1	adk	100	100	adk_10	fumC	100	100	fumC_4	gyrB	100	100	gyrB_4	icd	100	100	icd_83	mdh	100	100	mdh_8	purA	100	100	purA_8	recA	100	100	recA_6	12	21	21	H_fliC	100	1788 / 1788	O1_wzx	99.76	1236 / 1236	O2_wzy	100	1083 / 1083	cba	100	1536 / 1536	NZ_JANIMJ010000014.1 Escherichia coli strain CE99 NODE_14_length_125557_cov_11.513783_pilon, whole genome shotgun sequence	48172..49707	Colicin B	FJ664724	clpK2	100	2823 / 2862	NZ_JANIMJ010000014.1 Escherichia coli strain CE99 NODE_14_length_125557_cov_11.513783_pilon, whole genome shotgun sequence	27339..30161	heat shock survival AAA family ATPase ClpK. thermal stress survival	ARJ57694	cma	100	816 / 816	NZ_JANIMJ010000014.1 Escherichia coli strain CE99 NODE_14_length_125557_cov_11.513783_pilon, whole genome shotgun sequence	46569..47384	Colicin M activity	FJ664737	csgA	99.78	456 / 456	NZ_JANIMJ010000003.1 Escherichia coli strain CE99 NODE_3_length_433762_cov_16.428326_pilon, whole genome shotgun sequence, trp leader region	7154..7609	curlin major subunit CsgA	CP069646	fimH	100	489 / 489	NZ_JANIMJ010000027.1 Escherichia coli strain CE99 NODE_27_length_44348_cov_22.439745_pilon, whole genome shotgun sequence	19064..19552	Type 1 fimbriae	gad	100	1401 / 1401	NZ_JANIMJ010000025.1 Escherichia coli strain CE99 NODE_25_length_52942_cov_16.634495_pilon, whole genome shotgun sequence	14109..15509	Glutamate decarboxylase	AP009240	gad	100	1401 / 1401	NZ_JANIMJ010000002.1 Escherichia coli strain CE99 NODE_2_length_542769_cov_23.438289_pilon, whole genome shotgun sequence, rose (repression of heat shock gene expression) occurs in the 5'-region of heat shock genes and acts as an rna thermometer to modulate expression	321551..322951	Glutamate decarboxylase	AP010953	hlyE	98.04	918 / 918	NZ_JANIMJ010000003.1 Escherichia coli strain CE99 NODE_3_length_433762_cov_16.428326_pilon, whole genome shotgun sequence, trp leader region	116993..117898	Avian E. coli haemolysin	ECU57430	mrkA	96.26	615 / 597	NZ_JANIMJ010000014.1 Escherichia coli strain CE99 NODE_14_length_125557_cov_11.513783_pilon, whole genome shotgun sequence	113085..113699	type 3 fimbrial major subunit	ABW83989	nlpI	99.77	885 / 885	NZ_JANIMJ010000009.1 Escherichia coli strain CE99 NODE_9_length_165357_cov_20.653541_pilon, whole genome shotgun sequence	107241..108125	lipoprotein NlpI precursor	CP000243	terC	99.02	714 / 714	NZ_JANIMJ010000004.1 Escherichia coli strain CE99 NODE_4_length_368116_cov_21.313349_pilon, whole genome shotgun sequence	300890..301603	Tellurium ion resistance protein	CP007491	terC	99.27	959 / 966	NZ_JANIMJ010000004.1 Escherichia coli strain CE99 NODE_4_length_368116_cov_21.313349_pilon, whole genome shotgun sequence	6433..7391	Tellurium ion resistance protein	MG591698	traJ	98.55	690 / 690	NZ_JANIMJ010000014.1 Escherichia coli strain CE99 NODE_14_length_125557_cov_11.513783_pilon, whole genome shotgun sequence	71333..72022	Protein TraJ (Positive regulator of conjugal transfer operon)	AF550679	traT	100	732 / 732	NZ_JANIMJ010000014.1 Escherichia coli strain CE99 NODE_14_length_125557_cov_11.513783_pilon, whole genome shotgun sequence	93508..94239	Outer membrane protein complement resistance	CXZR01000026	yehA	97.97	1035 / 1035	NZ_JANIMJ010000001.1 Escherichia coli strain CE99 NODE_1_length_566529_cov_17.610812_pilon, whole genome shotgun sequence	449789..450823	Outer membrane lipoprotein, YHD fimbriael cluster	CP042934	yehB	97.58	2481 / 2481	NZ_JANIMJ010000001.1 Escherichia coli strain CE99 NODE_1_length_566529_cov_17.610812_pilon, whole genome shotgun sequence	450839..453309	Usher, YHD fimbriael cluster	CP042934	yehC	97.93	675 / 675	NZ_JANIMJ010000001.1 Escherichia coli strain CE99 NODE_1_length_566529_cov_17.610812_pilon, whole genome shotgun sequence	453325..453999	Chaperone, YHD fimbriael cluster	CP042934	yehD	98.53	543 / 543	NZ_JANIMJ010000001.1 Escherichia coli strain CE99 NODE_1_length_566529_cov_17.610812_pilon, whole genome shotgun sequence	454079..454621	Major pilin subunit, YHD fimbriael cluster	CP042934	aadA1	100	789/789	NZ_JANIMJ010000002.1 Escherichia coli strain CE99 NODE_2_length_542769_cov_23.438289_pilon, whole genome shotgun sequence, rose (repression of heat shock gene expression) occurs in the 5'-region of heat shock genes and acts as an rna thermometer to modulate expression	40079..40867	Spectinomycin, Streptomycin	JQ480156	dfrA1	100	474/474	NZ_JANIMJ010000002.1 Escherichia coli strain CE99 NODE_2_length_542769_cov_23.438289_pilon, whole genome shotgun sequence, rose (repression of heat shock gene expression) occurs in the 5'-region of heat shock genes and acts as an rna thermometer to modulate expression	41544..42017	Trimethoprim	X00926	enterobacteriales	IncFII	100	261 / 261	NZ_JANIMJ010000014.1 Escherichia coli strain CE99 NODE_14_length_125557_cov_11.513783_pilon, whole genome shotgun sequence	105808..106068	AY458016	enterobacteriales	IncX1	98.93	374 / 374	NZ_JANIMJ010000014.1 Escherichia coli strain CE99 NODE_14_length_125557_cov_11.513783_pilon, whole genome shotgun sequence	677..1050	EU370913