An ontology containing biotic and abiotic plant stresses. Plant Stress Ontology 2023-11-14 definition The official definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions. 2012-04-05: Barry Smith The official OBI definition, explaining the meaning of a class or property: 'Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions' is terrible. Can you fix to something like: A statement of necessary and sufficient conditions explaining the meaning of an expression referring to a class or property. Alan Ruttenberg Your proposed definition is a reasonable candidate, except that it is very common that necessary and sufficient conditions are not given. Mostly they are necessary, occasionally they are necessary and sufficient or just sufficient. Often they use terms that are not themselves defined and so they effectively can't be evaluated by those criteria. On the specifics of the proposed definition: We don't have definitions of 'meaning' or 'expression' or 'property'. For 'reference' in the intended sense I think we use the term 'denotation'. For 'expression', I think we you mean symbol, or identifier. For 'meaning' it differs for class and property. For class we want documentation that let's the intended reader determine whether an entity is instance of the class, or not. For property we want documentation that let's the intended reader determine, given a pair of potential relata, whether the assertion that the relation holds is true. The 'intended reader' part suggests that we also specify who, we expect, would be able to understand the definition, and also generalizes over human and computer reader to include textual and logical definition. Personally, I am more comfortable weakening definition to documentation, with instructions as to what is desirable. We also have the outstanding issue of how to aim different definitions to different audiences. A clinical audience reading chebi wants a different sort of definition documentation/definition from a chemistry trained audience, and similarly there is a need for a definition that is adequate for an ontologist to work with. PERSON:Daniel Schober GROUP:OBI:<http://purl.obolibrary.org/obo/obi> definition definition If R <- P o Q is a defining property chain axiom, then it also holds that R -> P o Q. Note that this cannot be expressed directly in OWL is a defining property chain axiom If R <- P o Q is a defining property chain axiom, then (1) R -> P o Q holds and (2) Q is either reflexive or locally reflexive. A corollary of this is that P SubPropertyOf R. is a defining property chain axiom where second argument is reflexive description license title has_alternative_id An alternative label for a class or property which has the exact same meaning than the preferred name/primary label. https://github.com/information-artifact-ontology/ontology-metadata/issues/20 has exact synonym has_exact_synonym https://github.com/information-artifact-ontology/ontology-metadata/issues/20 is part of my brain is part of my body (continuant parthood, two material entities) my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity) this day is part of this year (occurrent parthood) a core relation that holds between a part and its whole Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other. Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/ Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.) A continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'. part_of BFO:0000050 plant_experimental_conditions_ontology plant_ontology part_of part_of part of part of part_of http://www.obofoundry.org/ro/#OBO_REL:part_of https://wiki.geneontology.org/Part_of has part my body has part my brain (continuant parthood, two material entities) my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity) this year has part this day (occurrent parthood) a core relation that holds between a whole and its part Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part. Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/ Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.) A continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'. has_part BFO:0000051 plant_ontology has_part has_part has part has_part preceded by The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P. x is preceded by y if and only if the time point at which y ends is before or equivalent to the time point at which x starts. Formally: x preceded by y iff ω(y) <= α(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point. An example is: translation preceded_by transcription; aging preceded_by development (not however death preceded_by aging). Where derives_from links classes of continuants, preceded_by links classes of processes. Clearly, however, these two relations are not independent of each other. Thus if cells of type C1 derive_from cells of type C, then any cell division involving an instance of C1 in a given lineage is preceded_by cellular processes involving an instance of C. The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P. Note that an assertion to the effect that P preceded_by P1 is rather weak; it tells us little about the relations between the underlying instances in virtue of which the preceded_by relation obtains. Typically we will be interested in stronger relations, for example in the relation immediately_preceded_by, or in relations which combine preceded_by with a condition to the effect that the corresponding instances of P and P1 share participants, or that their participants are connected by relations of derivation, or (as a first step along the road to a treatment of causality) that the one process in some way affects (for example, initiates or regulates) the other. is preceded by preceded_by http://www.obofoundry.org/ro/#OBO_REL:preceded_by Laurel_Cooper 2013-07-09T14:29:15Z BFO:0000062 plant_ontology preceded_by preceded_by Note that an assertion to the effect that P preceded_by P1 is rather weak; it tells us little about the relations between the underlying instances in virtue of which the preceded_by relation obtains. Typically we will be interested in stronger relations, for example in the relation immediately_preceded_by, or in relations which combine preceded_by with a condition to the effect that the corresponding instances of P and P1 share participants, or that their participants are connected by relations of derivation, or (as a first step along the road to a treatment of causality) that the one process in some way affects (for example, initiates or regulates) the other. preceded by preceded_by The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P. POC:Laurel_Cooper precedes x precedes y if and only if the time point at which x ends is before or equivalent to the time point at which y starts. Formally: x precedes y iff ω(x) <= α(y), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point. Laurel_Cooper 2015-06-04T17:18:40Z BFO:0000063 plant_ontology precedes precedes precedes precedes inheres in this fragility is a characteristic of this vase this red color is a characteristic of this apple a relation between a specifically dependent continuant (the characteristic) and any other entity (the bearer), in which the characteristic depends on the bearer for its existence. inheres_in Note that this relation was previously called "inheres in", but was changed to be called "characteristic of" because BFO2 uses "inheres in" in a more restricted fashion. This relation differs from BFO2:inheres_in in two respects: (1) it does not impose a range constraint, and thus it allows qualities of processes, as well as of information entities, whereas BFO2 restricts inheres_in to only apply to independent continuants (2) it is declared functional, i.e. something can only be a characteristic of one thing. characteristic of bearer of this apple is bearer of this red color this vase is bearer of this fragility Inverse of characteristic_of A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist. bearer_of is bearer of has characteristic participates in this blood clot participates in this blood coagulation this input material (or this output material) participates in this process this investigator participates in this investigation a relation between a continuant and a process, in which the continuant is somehow involved in the process participates_in RO:0000056 plant_ontology participates_in participates_in participates in participates_in has participant this blood coagulation has participant this blood clot this investigation has participant this investigator this process has participant this input material (or this output material) a relation between a process and a continuant, in which the continuant is somehow involved in the process Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time. has_participant http://www.obofoundry.org/ro/#OBO_REL:has_participant RO:0000057 plant_ontology has_participant has_participant has participant has_participant this catalysis function is a function of this enzyme a relation between a function and an independent continuant (the bearer), in which the function specifically depends on the bearer for its existence A function inheres in its bearer at all times for which the function exists, however the function need not be realized at all the times that the function exists. function_of is function of This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020. function of this red color is a quality of this apple a relation between a quality and an independent continuant (the bearer), in which the quality specifically depends on the bearer for its existence A quality inheres in its bearer at all times for which the quality exists. is quality of quality_of This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020. quality of this investigator role is a role of this person a relation between a role and an independent continuant (the bearer), in which the role specifically depends on the bearer for its existence A role inheres in its bearer at all times for which the role exists, however the role need not be realized at all the times that the role exists. is role of role_of This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020. role of this enzyme has function this catalysis function (more colloquially: this enzyme has this catalysis function) a relation between an independent continuant (the bearer) and a function, in which the function specifically depends on the bearer for its existence A bearer can have many functions, and its functions can exist for different periods of time, but none of its functions can exist when the bearer does not exist. A function need not be realized at all the times that the function exists. has_function has function this apple has quality this red color a relation between an independent continuant (the bearer) and a quality, in which the quality specifically depends on the bearer for its existence A bearer can have many qualities, and its qualities can exist for different periods of time, but none of its qualities can exist when the bearer does not exist. has_quality has quality this person has role this investigator role (more colloquially: this person has this role of investigator) a relation between an independent continuant (the bearer) and a role, in which the role specifically depends on the bearer for its existence A bearer can have many roles, and its roles can exist for different periods of time, but none of its roles can exist when the bearer does not exist. A role need not be realized at all the times that the role exists. has_role has role a relation between an independent continuant (the bearer) and a disposition, in which the disposition specifically depends on the bearer for its existence has disposition inverse of has disposition This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020. disposition of A 'has regulatory component activity' B if A and B are GO molecular functions (GO_0003674), A has_component B and A is regulated by B. 2017-05-24T09:30:46Z has regulatory component activity A relationship that holds between a GO molecular function and a component of that molecular function that negatively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is negatively regulated by B. 2017-05-24T09:31:01Z By convention GO molecular functions are classified by their effector function. Internal regulatory functions are treated as components. For example, NMDA glutmate receptor activity is a cation channel activity with positive regulatory component 'glutamate binding' and negative regulatory components including 'zinc binding' and 'magnesium binding'. has negative regulatory component activity A relationship that holds between a GO molecular function and a component of that molecular function that positively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is positively regulated by B. 2017-05-24T09:31:17Z By convention GO molecular functions are classified by their effector function and internal regulatory functions are treated as components. So, for example calmodulin has a protein binding activity that has positive regulatory component activity calcium binding activity. Receptor tyrosine kinase activity is a tyrosine kinase activity that has positive regulatory component 'ligand binding'. has positive regulatory component activity 2017-05-24T09:44:33Z A 'has component activity' B if A is A and B are molecular functions (GO_0003674) and A has_component B. has component activity w 'has process component' p if p and w are processes, w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type. 2017-05-24T09:49:21Z has component process 2017-09-17T13:52:24Z Process(P2) is directly regulated by process(P1) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2. directly regulated by Process(P2) is directly regulated by process(P1) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2. Process(P2) is directly negatively regulated by process(P1) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P2 directly negatively regulated by P1. 2017-09-17T13:52:38Z directly negatively regulated by Process(P2) is directly negatively regulated by process(P1) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P2 directly negatively regulated by P1. Process(P2) is directly postively regulated by process(P1) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P2 is directly postively regulated by P1. 2017-09-17T13:52:47Z directly positively regulated by Process(P2) is directly postively regulated by process(P1) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P2 is directly postively regulated by P1. A 'has effector activity' B if A and B are GO molecular functions (GO_0003674), A 'has component activity' B and B is the effector (output function) of B. Each compound function has only one effector activity. 2017-09-22T14:14:36Z This relation is designed for constructing compound molecular functions, typically in combination with one or more regulatory component activity relations. has effector activity A 'has effector activity' B if A and B are GO molecular functions (GO_0003674), A 'has component activity' B and B is the effector (output function) of B. Each compound function has only one effector activity. David Osumi-Sutherland X ends_after Y iff: end(Y) before_or_simultaneous_with end(X) ends after David Osumi-Sutherland starts_at_end_of X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y) immediately preceded by David Osumi-Sutherland ends_at_start_of meets X immediately_precedes_Y iff: end(X) simultaneous_with start(Y) immediately precedes x overlaps y if and only if there exists some z such that x has part z and z part of y http://purl.obolibrary.org/obo/BFO_0000051 some (http://purl.obolibrary.org/obo/BFO_0000050 some ?Y) overlaps true true x only in taxon y if and only if x is in taxon y, and there is no other organism z such that y!=z a and x is in taxon z. RO:0002160 plant_ontology only_in_taxon only_in_taxon only in taxon only_in_taxon x is in taxon y if an only if y is an organism, and the relationship between x and y is one of: part of (reflexive), developmentally preceded by, derives from, secreted by, expressed. Connects a biological entity to its taxon of origin. in taxon w 'has component' p if w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type. The definition of 'has component' is still under discussion. The challenge is in providing a definition that does not imply transitivity. For use in recording has_part with a cardinality constraint, because OWL does not permit cardinality constraints to be used in combination with transitive object properties. In situations where you would want to say something like 'has part exactly 5 digit, you would instead use has_component exactly 5 digit. has component A relationship that holds between a biological entity and a phenotype. Here a phenotype is construed broadly as any kind of quality of an organism part, a collection of these qualities, or a change in quality or qualities (e.g. abnormally increased temperature). The subject of this relationship can be an organism (where the organism has the phenotype, i.e. the qualities inhere in parts of this organism), a genomic entity such as a gene or genotype (if modifications of the gene or the genotype causes the phenotype), or a condition such as a disease (such that if the condition inheres in an organism, then the organism has the phenotype). has phenotype inverse of has phenotype phenotype of x develops from y if and only if either (a) x directly develops from y or (b) there exists some z such that x directly develops from z and z develops from y RO:0002202 plant_ontology develops_from develops_from develops from develops_from inverse of develops from develops into p regulates q iff p is causally upstream of q, the execution of p is not constant and varies according to specific conditions, and p influences the rate or magnitude of execution of q due to an effect either on some enabler of q or some enabler of a part of q. GO Regulation precludes parthood; the regulatory process may not be within the regulated process. regulates (processual) false regulates p negatively regulates q iff p regulates q, and p decreases the rate or magnitude of execution of q. negatively regulates (process to process) negatively regulates p positively regulates q iff p regulates q, and p increases the rate or magnitude of execution of q. positively regulates (process to process) positively regulates mechanosensory neuron capable of detection of mechanical stimulus involved in sensory perception (GO:0050974) osteoclast SubClassOf 'capable of' some 'bone resorption' A relation between a material entity (such as a cell) and a process, in which the material entity has the ability to carry out the process. has function realized in For compatibility with BFO, this relation has a shortcut definition in which the expression "capable of some P" expands to "bearer_of (some realized_by only P)". capable of c stands in this relationship to p if and only if there exists some p' such that c is capable_of p', and p' is part_of p. has function in capable of part of true true Do not use this relation directly. It is ended as a grouping for relations between occurrents involving the relative timing of their starts and ends. https://docs.google.com/document/d/1kBv1ep_9g3sTR-SD3jqzFqhuwo9TPNF-l-9fUDbO6rM/edit?pli=1 A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations. temporally related to p has input c iff: p is a process, c is a material entity, c is a participant in p, c is present at the start of p, and the state of c is modified during p. consumes has input https://wiki.geneontology.org/Has_input x has developmental contribution from y iff x has some part z such that z develops from y has developmental contribution from inverse of has developmental contribution from developmentally contributes to Candidate definition: x developmentally related to y if and only if there exists some developmental process (GO:0032502) p such that x and y both participates in p, and x is the output of p and y is the input of p X developmentally related to y if and only if there exists some developmental process (GO:0032502) p such that x and y both participates in p, and x is the output of p and y is the input of p. Laurel_Cooper 2013-06-27T13:16:56Z RO:0002258 plant_ontology developmentally_preceded_by developmentally_preceded_by developmentally preceded by developmentally_preceded_by X developmentally related to y if and only if there exists some developmental process (GO:0032502) p such that x and y both participates in p, and x is the output of p and y is the input of p. RO:0002258 A faulty traffic light (material entity) whose malfunctioning (a process) is causally upstream of a traffic collision (a process): the traffic light acts upstream of the collision. c acts upstream of p if and only if c enables some f that is involved in p' and p' occurs chronologically before p, is not part of p, and affects the execution of p. c is a material entity and f, p, p' are processes. acts upstream of A gene product that has some activity, where that activity may be a part of a pathway or upstream of the pathway. c acts upstream of or within p if c is enables f, and f is causally upstream of or within p. c is a material entity and p is an process. affects acts upstream of or within https://wiki.geneontology.org/Acts_upstream_of_or_within Inverse of developmentally preceded by developmentally succeeded by p is causally upstream of, positive effect q iff p is casually upstream of q, and the execution of p is required for the execution of q. holds between x and y if and only if x is causally upstream of y and the progression of x increases the frequency, rate or extent of y causally upstream of, positive effect p is causally upstream of, negative effect q iff p is casually upstream of q, and the execution of p decreases the execution of q. causally upstream of, negative effect q characteristic of part of w if and only if there exists some p such that q inheres in p and p part of w. Because part_of is transitive, inheres in is a sub-relation of characteristic of part of inheres in part of characteristic of part of true A relationship that holds via some environmental process Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving the process of evolution. evolutionarily related to A mereological relationship or a topological relationship Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving parthood or connectivity relationships mereotopologically related to A relationship that holds between entities participating in some developmental process (GO:0032502) developmentally related to a particular instances of akt-2 enables some instance of protein kinase activity c enables p iff c is capable of p and c acts to execute p. catalyzes executes has is catalyzing is executing This relation differs from the parent relation 'capable of' in that the parent is weaker and only expresses a capability that may not be actually realized, whereas this relation is always realized. enables https://wiki.geneontology.org/Enables A grouping relationship for any relationship directly involving a function, or that holds because of a function of one of the related entities. This is a grouping relation that collects relations used for the purpose of connecting structure and function functionally related to this relation holds between c and p when c is part of some c', and c' is capable of p. false part of structure that is capable of true true c involved_in p if and only if c enables some process p', and p' is part of p actively involved in enables part of involved in https://wiki.geneontology.org/Involved_in inverse of enables enabled by https://wiki.geneontology.org/Enabled_by inverse of regulates regulated by (processual) regulated by inverse of negatively regulates negatively regulated by inverse of positively regulates positively regulated by inverse of has input input of x has developmental potential involving y iff x is capable of a developmental process with output y. y may be the successor of x, or may be a different structure in the vicinity (as for example in the case of developmental induction). has developmental potential involving x has potential to developmentrally contribute to y iff x developmentally contributes to y or x is capable of developmentally contributing to y has potential to developmentally contribute to x has the potential to develop into y iff x develops into y or if x is capable of developing into y has potential to develop into x has potential to directly develop into y iff x directly develops into y or x is capable of directly developing into y has potential to directly develop into inverse of upstream of causally downstream of immediately causally downstream of p indirectly positively regulates q iff p is indirectly causally upstream of q and p positively regulates q. indirectly activates indirectly positively regulates https://wiki.geneontology.org/Indirectly_positively_regulates p indirectly negatively regulates q iff p is indirectly causally upstream of q and p negatively regulates q. indirectly inhibits indirectly negatively regulates https://wiki.geneontology.org/Indirectly_negatively_regulates relation that links two events, processes, states, or objects such that one event, process, state, or object (a cause) contributes to the production of another event, process, state, or object (an effect) where the cause is partly or wholly responsible for the effect, and the effect is partly or wholly dependent on the cause. This branch of the ontology deals with causal relations between entities. It is divided into two branches: causal relations between occurrents/processes, and causal relations between material entities. We take an 'activity flow-centric approach', with the former as primary, and define causal relations between material entities in terms of causal relations between occurrents. To define causal relations in an activity-flow type network, we make use of 3 primitives: * Temporal: how do the intervals of the two occurrents relate? * Is the causal relation regulatory? * Is the influence positive or negative? The first of these can be formalized in terms of the Allen Interval Algebra. Informally, the 3 bins we care about are 'direct', 'indirect' or overlapping. Note that all causal relations should be classified under a RO temporal relation (see the branch under 'temporally related to'). Note that all causal relations are temporal, but not all temporal relations are causal. Two occurrents can be related in time without being causally connected. We take causal influence to be primitive, elucidated as being such that has the upstream changed, some qualities of the donwstream would necessarily be modified. For the second, we consider a relationship to be regulatory if the system in which the activities occur is capable of altering the relationship to achieve some objective. This could include changing the rate of production of a molecule. For the third, we consider the effect of the upstream process on the output(s) of the downstream process. If the level of output is increased, or the rate of production of the output is increased, then the direction is increased. Direction can be positive, negative or neutral or capable of either direction. Two positives in succession yield a positive, two negatives in succession yield a positive, otherwise the default assumption is that the net effect is canceled and the influence is neutral. Each of these 3 primitives can be composed to yield a cross-product of different relation types. Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect. causally related to relation that links two events, processes, states, or objects such that one event, process, state, or object (a cause) contributes to the production of another event, process, state, or object (an effect) where the cause is partly or wholly responsible for the effect, and the effect is partly or wholly dependent on the cause. https://en.wikipedia.org/wiki/Causality p is causally upstream of q iff p is causally related to q, the end of p precedes the end of q, and p is not an occurrent part of q. causally upstream of p is immediately causally upstream of q iff p is causally upstream of q, and the end of p is coincident with the beginning of q. immediately causally upstream of p is 'causally upstream or within' q iff p is causally related to q, and the end of p precedes, or is coincident with, the end of q. We would like to make this disjoint with 'preceded by', but this is prohibited in OWL2 influences (processual) affects causally upstream of or within inverse of causally upstream of or within causally downstream of or within c involved in regulation of p if c is involved in some p' and p' regulates some p involved in regulation of c involved in regulation of p if c is involved in some p' and p' positively regulates some p involved in positive regulation of c involved in regulation of p if c is involved in some p' and p' negatively regulates some p involved in negative regulation of c involved in or regulates p if and only if either (i) c is involved in p or (ii) c is involved in regulation of p OWL does not allow defining object properties via a Union involved in or reguates involved in or involved in regulation of true A relationship that holds between two entities in which the processes executed by the two entities are causally connected. This relation and all sub-relations can be applied to either (1) pairs of entities that are interacting at any moment of time (2) populations or species of entity whose members have the disposition to interact (3) classes whose members have the disposition to interact. Considering relabeling as 'pairwise interacts with' Note that this relationship type, and sub-relationship types may be redundant with process terms from other ontologies. For example, the symbiotic relationship hierarchy parallels GO. The relations are provided as a convenient shortcut. Consider using the more expressive processual form to capture your data. In the future, these relations will be linked to their cognate processes through rules. in pairwise interaction with interacts with http://purl.obolibrary.org/obo/ro/docs/interaction-relations/ http://purl.obolibrary.org/obo/MI_0914 An interaction relationship in which the two partners are molecular entities that directly physically interact with each other for example via a stable binding interaction or a brief interaction during which one modifies the other. binds molecularly binds with molecularly interacts with http://purl.obolibrary.org/obo/MI_0915 Axiomatization to GO to be added later An interaction relation between x and y in which x catalyzes a reaction in which a phosphate group is added to y. phosphorylates The entity A, immediately upstream of the entity B, has an activity that regulates an activity performed by B. For example, A and B may be gene products and binding of B by A regulates the kinase activity of B. A and B can be physically interacting but not necessarily. Immediately upstream means there are no intermediate entity between A and B. molecularly controls directly regulates activity of The entity A, immediately upstream of the entity B, has an activity that negatively regulates an activity performed by B. For example, A and B may be gene products and binding of B by A negatively regulates the kinase activity of B. directly inhibits molecularly decreases activity of directly negatively regulates activity of The entity A, immediately upstream of the entity B, has an activity that positively regulates an activity performed by B. For example, A and B may be gene products and binding of B by A positively regulates the kinase activity of B. directly activates molecularly increases activity of directly positively regulates activity of A relation that holds between a disease or an organism and a phenotype has symptom This property or its subproperties is not to be used directly. These properties exist as helper properties that are used to support OWL reasoning. helper property (not for use in curation) true is kinase activity A relationship between a material entity and a process where the material entity has some causal role that influences the process causal agent in process p is causally related to q if and only if p or any part of p and q or any part of q are linked by a chain of events where each event pair is one where the execution of p influences the execution of q. p may be upstream, downstream, part of, or a container of q. Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect. causal relation between processes depends on The intent is that the process branch of the causal property hierarchy is primary (causal relations hold between occurrents/processes), and that the material branch is defined in terms of the process branch Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect. causal relation between entities causally influenced by (entity-centric) causally influenced by interaction relation helper property http://purl.obolibrary.org/obo/ro/docs/interaction-relations/ molecular interaction relation helper property The entity or characteristic A is causally upstream of the entity or characteristic B, A having an effect on B. An entity corresponds to any biological type of entity as long as a mass is measurable. A characteristic corresponds to a particular specificity of an entity (e.g., phenotype, shape, size). causally influences (entity-centric) causally influences p directly regulates q iff p is immediately causally upstream of q and p regulates q. directly regulates (processual) directly regulates gland SubClassOf 'has part structure that is capable of' some 'secretion by cell' s 'has part structure that is capable of' p if and only if there exists some part x such that s 'has part' x and x 'capable of' p has part structure that is capable of A relationship that holds between a material entity and a process in which causality is involved, with either the material entity or some part of the material entity exerting some influence over the process, or the process influencing some aspect of the material entity. Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect. causal relation between material entity and a process pyrethroid -> growth Holds between c and p if and only if c is capable of some activity a, and a regulates p. capable of regulating Holds between c and p if and only if c is capable of some activity a, and a negatively regulates p. capable of negatively regulating renin -> arteriolar smooth muscle contraction Holds between c and p if and only if c is capable of some activity a, and a positively regulates p. capable of positively regulating Inverse of 'causal agent in process' process has causal agent A relationship that holds between two entities, where the entities exhibit a statistical dependence relationship. The entities may be statistical variables, or they may be other kinds of entities such as diseases, chemical entities or processes. correlated with p directly positively regulates q iff p is immediately causally upstream of q, and p positively regulates q. directly positively regulates (process to process) directly positively regulates https://wiki.geneontology.org/Directly_positively_regulates p directly negatively regulates q iff p is immediately causally upstream of q, and p negatively regulates q. directly negatively regulates (process to process) directly negatively regulates https://wiki.geneontology.org/Directly_negatively_regulates 2017-11-05T03:20:01Z realizable has basis in 2017-11-05T03:20:29Z is basis for realizable 2017-11-05T03:26:47Z disease has basis in Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all of which have a disease as the subject. 2017-11-05T03:50:54Z causal relationship with disease as subject A relationship between a disease and a process where the disease process disrupts the execution of the process. disease causes disruption of (disease to process) 2017-11-05T03:51:09Z disease causes disruption of disease causes dysfunction of (disease to anatomical entity) 2017-11-05T03:58:20Z disease causes dysfunction of Holds between an entity and an process P where the entity enables some larger compound process, and that larger process has-part P. 2018-01-25T23:20:13Z enables subfunction 2018-01-26T23:49:30Z acts upstream of or within, positive effect https://wiki.geneontology.org/Acts_upstream_of_or_within,_positive_effect 2018-01-26T23:49:51Z acts upstream of or within, negative effect https://wiki.geneontology.org/Acts_upstream_of_or_within,_negative_effect c 'acts upstream of, positive effect' p if c is enables f, and f is causally upstream of p, and the direction of f is positive 2018-01-26T23:53:14Z acts upstream of, positive effect https://wiki.geneontology.org/Acts_upstream_of,_positive_effect c 'acts upstream of, negative effect' p if c is enables f, and f is causally upstream of p, and the direction of f is negative 2018-01-26T23:53:22Z acts upstream of, negative effect https://wiki.geneontology.org/Acts_upstream_of,_negative_effect 2018-03-13T23:55:05Z causally upstream of or within, negative effect https://wiki.geneontology.org/Causally_upstream_of_or_within,_negative_effect 2018-03-13T23:55:19Z causally upstream of or within, positive effect The entity A has an activity that regulates an activity of the entity B. For example, A and B are gene products where the catalytic activity of A regulates the kinase activity of B. regulates activity of p is indirectly causally upstream of q iff p is causally upstream of q and there exists some process r such that p is causally upstream of r and r is causally upstream of q. 2022-09-26T06:07:17Z indirectly causally upstream of p indirectly regulates q iff p is indirectly causally upstream of q and p regulates q. 2022-09-26T06:08:01Z indirectly regulates A relationship between a disease and an infectious agent where the material basis of the disease is an infection with some infectious agent. disease has infectious agent Do not use this relation directly. It is intended as a grouping for a set of relations regarding presentation of phenotypes and disease. 2021-11-05T17:30:14Z has phenotype or disease https://github.com/oborel/obo-relations/issues/478 A diagnostic testing device utilizes a specimen. X device utilizes material Y means X and Y are material entities, and X is capable of some process P that has input Y. A diagnostic testing device utilizes a specimen means that the diagnostic testing device is capable of an assay, and this assay a specimen as its input. See github ticket https://github.com/oborel/obo-relations/issues/497 2021-11-08T12:00:00Z utilizes device utilizes material A relation between entities in which one increases or decreases as the other does the same. positively correlated with A relationship that holds between a process and a characteristic in which process (P) regulates characteristic (C) iff: P results in the existence of C OR affects the intensity or magnitude of C. regulates characteristic A relationship that holds between a process and a characteristic in which process (P) positively regulates characteristic (C) iff: P results in an increase in the intensity or magnitude of C. positively regulates characteristic A relationship that holds between a process and a characteristic in which process (P) negatively regulates characteristic (C) iff: P results in a decrease in the intensity or magnitude of C. negatively regulates characteristic This relation groups relations between diseases and any other kind of entity. Do not use this relation directly. It is intended as a grouping for a diverse set of relations, in which the subject or object is a disease. 2018-09-26T00:00:32Z disease relationship entity An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts. An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts. continuant continuant An entity that has temporal parts and that happens, unfolds or develops through time. An entity that has temporal parts and that happens, unfolds or develops through time. occurrent occurrent A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything. b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002]) b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002]) A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything. independent continuant independent continuant b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002]) http://purl.obolibrary.org/obo/bfo/axiom/017-002 An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003]) p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003]) An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. process process p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003]) http://purl.obolibrary.org/obo/bfo/axiom/083-003 disposition A specifically dependent continuant that inheres in continuant entities and are not exhibited in full at every time in which it inheres in an entity or group of entities. The exhibition or actualization of a realizable entity is a particular manifestation, functioning or process that occurs under certain circumstances. realizable entity quality b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003]) A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same. specifically dependent continuant A realizable entity the manifestation of which brings about some result or end that is not essential to a continuant in virtue of the kind of thing that it is but that can be served or participated in by that kind of continuant in some kinds of natural, social or institutional contexts. role b is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities. (axiom label in BFO2 Reference: [074-001]) A continuant that is dependent on one or other independent continuant bearers. For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time. generically dependent continuant function An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time. An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time. material entity material entity A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs. molecular function GO:0003674 Note that, in addition to forming the root of the molecular function ontology, this term is recommended for use for the annotation of gene products whose molecular function is unknown. When this term is used for annotation, it indicates that no information was available about the molecular function of the gene product annotated as of the date the annotation was made; the evidence code 'no data' (ND), is used to indicate this. Despite its name, this is not a type of 'function' in the sense typically defined by upper ontologies such as Basic Formal Ontology (BFO). It is instead a BFO:process carried out by a single gene product or complex. molecular_function A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs. GOC:pdt catalytic activity A biological process is the execution of a genetically-encoded biological module or program. It consists of all the steps required to achieve the specific biological objective of the module. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence. jl 2012-09-19T15:05:24Z Wikipedia:Biological_process biological process physiological process single organism process single-organism process GO:0008150 Note that, in addition to forming the root of the biological process ontology, this term is recommended for use for the annotation of gene products whose biological process is unknown. When this term is used for annotation, it indicates that no information was available about the biological process of the gene product annotated as of the date the annotation was made; the evidence code 'no data' (ND), is used to indicate this. biological_process A biological process is the execution of a genetically-encoded biological module or program. It consists of all the steps required to achieve the specific biological objective of the module. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence. GOC:pdt true Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. Reactome:R-HSA-6788855 Reactome:R-HSA-6788867 phosphokinase activity GO:0016301 Note that this term encompasses all activities that transfer a single phosphate group; although ATP is by far the most common phosphate donor, reactions using other phosphate donors are included in this term. kinase activity Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. ISBN:0198506732 Reactome:R-HSA-6788855 FN3KRP phosphorylates PsiAm, RibAm Reactome:R-HSA-6788867 FN3K phosphorylates ketosamines transferase activity transferase activity, transferring phosphorus-containing groups curation status specification The curation status of the term. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value. Better to represent curation as a process with parts and then relate labels to that process (in IAO meeting) PERSON:Bill Bug GROUP:OBI:<http://purl.obolibrary.org/obo/obi> OBI_0000266 curation status specification GC_ID:1 PMID:30365038 PMID:32761142 ncbi_taxonomy all root all GC_ID:1 ncbi_taxonomy Cercidospora exigua Didymosphaeria exigua Didymella exigua Cercidospora exigua Didymosphaeria exigua GC_ID:1 ncbi_taxonomy Trematosphaeria NCBITaxon:1837844 GC_ID:1 ncbi_taxonomy Botryosphaeria quercus Sphaeria quercuum Botryosphaeria quercuum Botryosphaeria quercus Sphaeria quercuum GC_ID:1 ncbi_taxonomy mitosporic Ascomycota Amphobotrys mitosporic Ascomycota NCBITaxon:680430 GC_ID:1 ncbi_taxonomy Botrytis ricini Sclerotinia ricini Amphobotrys ricini Botrytis ricini Sclerotinia ricini GC_ID:1 ncbi_taxonomy Viscaceae GC_ID:1 ncbi_taxonomy Psittacantheae GC_ID:1 ncbi_taxonomy Lorantheae GC_ID:1 ncbi_taxonomy Psittacanthinae GC_ID:1 ncbi_taxonomy Loranthinae GC_ID:1 ncbi_taxonomy Kluyveromyces marxianus DMKU3-1042 GC_ID:1 ncbi_taxonomy Benincaseae GC_ID:1 ncbi_taxonomy Cucurbiteae NCBITaxon:235162 NCBITaxon:240366 NCBITaxon:87832 GC_ID:1 ncbi_taxonomy Sweet potato leaf curl virus NCBITaxon:40460 GC_ID:1 ncbi_taxonomy Hericium laciniatum Hericium ramosum Hydnum coralloides Hericium coralloides Hericium laciniatum Hericium ramosum Hydnum coralloides NCBITaxon:1608296 GC_ID:1 PMID:21455321 PMID:22174791 ncbi_taxonomy Verticillium dahliae var. longisporum Verticillium longisporum var. longisporum Verticillium longisporum Verticillium dahliae var. longisporum Verticillium longisporum var. longisporum GC_ID:1 ncbi_taxonomy Aphanomyces GC_ID:1 ncbi_taxonomy Aphanomyces euteiches NCBITaxon:87831 GC_ID:1 European wheat mosaic virus soil-borne rye mosaic virus ncbi_taxonomy Soil-borne cereal mosaic virus European wheat mosaic virus soil-borne rye mosaic virus NCBITaxon:1712118 GC_ID:1 ncbi_taxonomy Choanephora cucurbitarum f. cucurbitarum Choanephora infundibulifera f. cucurbitarum Rhopalomyces cucurbitarum Choanephora cucurbitarum Choanephora cucurbitarum f. cucurbitarum Choanephora infundibulifera f. cucurbitarum Rhopalomyces cucurbitarum NCBITaxon:4848 GC_ID:1 ncbi_taxonomy Gilbertellaceae Choanephoraceae Gilbertellaceae GC_ID:1 ncbi_taxonomy Gilbertella NCBITaxon:1195487 GC_ID:1 ncbi_taxonomy Choanephora persicaria Gilbertella persicaria Choanephora persicaria NCBITaxon:1484600 NCBITaxon:2081992 NCBITaxon:33195 GC_ID:1 ncbi_taxonomy Cochliobolus miyabeanus Drechslera oryzae Helminthosporium oryzae Luttrellia oryzae Bipolaris oryzae Cochliobolus miyabeanus Drechslera oryzae Helminthosporium oryzae Luttrellia oryzae GC_ID:1 ncbi_taxonomy Monographella nivalis GC_ID:1 ncbi_taxonomy Leptostromella graminis Sphaeria graminis Phyllachora graminis Leptostromella graminis Sphaeria graminis GC_ID:1 ncbi_taxonomy Pezicula GC_ID:1 ncbi_taxonomy Polyporus tornatus Ganoderma tornatum Polyporus tornatus GC_ID:1 ncbi_taxonomy Ganoderma zonatum GC_ID:1 ncbi_taxonomy Peronospora viciae GC_ID:1 ncbi_taxonomy Anomiidae GC_ID:1 ncbi_taxonomy Anomia GC_ID:1 ncbi_taxonomy Vira Viridae viruses Viruses Vira Viridae viruses GC_ID:1 PMID:18375151 ncbi_taxonomy Asteroideae GC_ID:1 ncbi_taxonomy Astereae GC_ID:1 ncbi_taxonomy Anthemideae GC_ID:1 ncbi_taxonomy Senecioneae GC_ID:1 ncbi_taxonomy Helenieae GC_ID:1 ncbi_taxonomy Heliantheae GC_ID:1 PMID:18375151 ncbi_taxonomy Mutisieae GC_ID:1 ncbi_taxonomy Cardueae GC_ID:1 ncbi_taxonomy Glomerellales NCBITaxon:1028404 GC_ID:1 ncbi_taxonomy Australiascaceae NCBITaxon:1028424 GC_ID:1 ncbi_taxonomy Ceratocystidaceae GC_ID:11 PMID:21112986 ncbi_taxonomy Actinomyces ipomoea Streptomyces ipomoea Streptomyces ipomoeae Actinomyces ipomoea Streptomyces ipomoea GC_ID:1 ncbi_taxonomy Stereaceae GC_ID:1 ncbi_taxonomy Peniophoraceae NCBITaxon:1033979 GC_ID:1 ncbi_taxonomy Plectosphaerellaceae GC_ID:1 PMID:7662294 ncbi_taxonomy Ashbya gossypii FDAG1 Eremothecium gossypii FDAG1 Ashbya gossypii FDAG1 GC_ID:1 ncbi_taxonomy Puccinia aff. coronata ML-2011 NCBITaxon:40264 NCBITaxon:5106 GC_ID:1 ncbi_taxonomy Verticillium GC_ID:1 ncbi_taxonomy Bursaphelenchus sp. st1_10 GC_ID:1 ncbi_taxonomy Aphelenchoides sp. st1_30 GC_ID:1 ncbi_taxonomy Paratrichodorus sp. st5_29 GC_ID:1 ncbi_taxonomy Trichodorus sp. st7_13 GC_ID:1 ncbi_taxonomy Exobasidium sp. agrFF416 GC_ID:1 ncbi_taxonomy Physalospora sp. agrFF592 GC_ID:1 ncbi_taxonomy Zizania palustris NCBITaxon:139960 GC_ID:1 ncbi_taxonomy Chaetosphaeriaceae NCBITaxon:122652 NCBITaxon:159072 NCBITaxon:159073 GC_ID:1 ncbi_taxonomy anamorphic Bionectriaceae Bionectriaceae anamorphic Bionectriaceae GC_ID:11 Pseudomonas fluorescens str. Q2-87 Pseudomonas fluorescens strain Q2-87 ncbi_taxonomy Pseudomonas fluorescens Q2-87 Pseudomonas fluorescens str. Q2-87 Pseudomonas fluorescens strain Q2-87 GC_ID:1 Aureobasidium pullulans var. pullulans EXF-150 ncbi_taxonomy Aureobasidium pullulans EXF-150 Aureobasidium pullulans var. pullulans EXF-150 GC_ID:1 ncbi_taxonomy Gloeophyllum trabeum NCBITaxon:118174 GC_ID:1 ncbi_taxonomy Pleurotaceae NCBITaxon:124082 GC_ID:1 ncbi_taxonomy Cerebella Epicoccum Cerebella GC_ID:1 ncbi_taxonomy Drepanoidea GC_ID:1 hook-tip moths ncbi_taxonomy Drepanidae hook-tip moths GC_ID:1 ncbi_taxonomy Obtectomera GC_ID:11 Erwinia tracheiphila str. PSU-1 Erwinia tracheiphila strain PSU-1 ncbi_taxonomy Erwinia tracheiphila PSU-1 Erwinia tracheiphila str. PSU-1 Erwinia tracheiphila strain PSU-1 GC_ID:1 ncbi_taxonomy Zymoseptoria NCBITaxon:54734 GC_ID:1 ncbi_taxonomy Mycosphaerella graminicola Septoria tritici Sphaeria graminicola Zymoseptoria tritici Mycosphaerella graminicola Septoria tritici Sphaeria graminicola GC_ID:1 ncbi_taxonomy Adenoviridae GC_ID:1 PMID:22174791 ncbi_taxonomy Verticillium alfalfae GC_ID:1 ncbi_taxonomy Elettaria GC_ID:1 ncbi_taxonomy Pyrrhulomyces aff. astragalinus PBM2975 NCBITaxon:1515704 GC_ID:1 cardamom cardamon ncbi_taxonomy Amomum cardamomum Elettaria cardamomum cardamom cardamon Amomum cardamomum GC_ID:1 ncbi_taxonomy Dialonectria NCBITaxon:152772 NCBITaxon:57160 GC_ID:1 ncbi_taxonomy Cosmospora episphaeria Cucurbitaria episphaeria Fusarium episphaeria Nectria episphaeria Sphaeria episphaeria Dialonectria episphaeria Cosmospora episphaeria Cucurbitaria episphaeria Fusarium episphaeria Nectria episphaeria Sphaeria episphaeria GC_ID:1 ncbi_taxonomy Microcera GC_ID:1 ncbi_taxonomy Aviadenovirus GC_ID:1 ncbi_taxonomy mitosporic Capnodiales Septocyta mitosporic Capnodiales GC_ID:1 ncbi_taxonomy Ascochyta ruborum Septocyta ruborum Ascochyta ruborum GC_ID:1 ncbi_taxonomy Oryza sativa/Pyricularia oryzae mixed EST library NCBITaxon:1133686 GC_ID:1 ncbi_taxonomy Cochliobolus tuberculatus Curvularia tuberculata Cochliobolus tuberculatus NCBITaxon:115135 NCBITaxon:2763897 NCBITaxon:582723 GC_ID:1 ncbi_taxonomy Epicoccum purpurascens Phoma epicoccina Epicoccum nigrum Epicoccum purpurascens Phoma epicoccina NCBITaxon:1196558 GC_ID:1 ncbi_taxonomy Mucor piriformis GC_ID:1 ncbi_taxonomy Pectinoida Pectinida Pectinoida NCBITaxon:190931 GC_ID:1 ncbi_taxonomy Apiosporaceae NCBITaxon:27352 NCBITaxon:34415 GC_ID:1 ncbi_taxonomy Cronartiaceae Coleosporiaceae Cronartiaceae GC_ID:1 ncbi_taxonomy Caulimovirus CERV GC_ID:1 ncbi_taxonomy Carnation etched ring virus CERV CAMV GC_ID:1 cauliflower mosaic virus CaMV ncbi_taxonomy Cauliflower mosaic virus CAMV cauliflower mosaic virus CaMV GC_ID:1 ncbi_taxonomy Phoma medicaginis Ascochyta medicaginicola Phoma medicaginis NCBITaxon:387323 NCBITaxon:859179 NCBITaxon:859180 NCBITaxon:859181 NCBITaxon:859182 NCBITaxon:859183 NCBITaxon:859184 NCBITaxon:859185 GC_ID:1 Phoma sclerotioides var. champlainii Phoma sclerotioides var. champlainii (nom. inval.) Phoma sclerotioides var. macrospora Phoma sclerotioides var. macrospora (nom. inval.) Phoma sclerotioides var. obscura (nom. inval.) Phoma sclerotioides var. saskatchewanii (nom. inval.) Phoma sclerotioides var. steubenii (nom. inval.) Phoma sclerotioides var. viridis Phoma sclerotioides var. viridis (nom. inval.) Phoma sp. MJW-2010d ncbi_taxonomy Leptosphaeria sclerotioides var. sclerotioides Phoma sclerotioides Plenodomus sclerotioides Leptosphaeria sclerotioides Phoma sclerotioides var. champlainii Phoma sclerotioides var. champlainii (nom. inval.) Phoma sclerotioides var. macrospora Phoma sclerotioides var. macrospora (nom. inval.) Phoma sclerotioides var. obscura (nom. inval.) Phoma sclerotioides var. saskatchewanii (nom. inval.) Phoma sclerotioides var. steubenii (nom. inval.) Phoma sclerotioides var. viridis Phoma sclerotioides var. viridis (nom. inval.) Phoma sp. MJW-2010d Leptosphaeria sclerotioides var. sclerotioides Phoma sclerotioides Plenodomus sclerotioides NCBITaxon:118239 NCBITaxon:29906 NCBITaxon:46530 NCBITaxon:5239 GC_ID:1 black scurf of potato ncbi_taxonomy Corticium praticola Hypochnus cucumeris Thanatephorus praticola Thanatephorus cucumeris black scurf of potato Corticium praticola Hypochnus cucumeris Thanatephorus praticola GC_ID:11 Pseudomonas syringae pv. phaseolicola str. 1644R Pseudomonas syringae pv. phaseolicola strain 1644R ncbi_taxonomy Pseudomonas syringae pv. phaseolicola 1644R Pseudomonas savastanoi pv. phaseolicola 1644R Pseudomonas syringae pv. phaseolicola str. 1644R Pseudomonas syringae pv. phaseolicola strain 1644R Pseudomonas syringae pv. phaseolicola 1644R GC_ID:1 ncbi_taxonomy Ilyonectria GC_ID:1 ncbi_taxonomy Typhula idahoensis NCBITaxon:364364 NCBITaxon:685540 GC_ID:1 ncbi_taxonomy Phialophora malorum Sporotrichum malorum Cadophora malorum Phialophora malorum Sporotrichum malorum GC_ID:1 ncbi_taxonomy Oryza sativa Japonica Group x Oryza sativa Indica Group GC_ID:1 ncbi_taxonomy Peronosclerospora miscanthi GC_ID:1 Geminivirus ncbi_taxonomy Geminiviridae Geminivirus GC_ID:1 Geminivirus subgroup I Subgroup I Geminivirus ncbi_taxonomy Mastrevirus Geminivirus subgroup I Subgroup I Geminivirus GC_ID:1 Geminivirus subgroup II Subgroup II Geminivirus ncbi_taxonomy Curtovirus Geminivirus subgroup II Subgroup II Geminivirus GC_ID:1 Geminivirus subgroup III Subgroup III Geminivirus ncbi_taxonomy Begomovirus Geminivirus subgroup III Subgroup III Geminivirus GC_ID:1 Cassava latent virus cassava mosaic virus ncbi_taxonomy African cassava mosaic virus Cassava latent virus cassava mosaic virus CSMV GC_ID:1 ncbi_taxonomy Chloris striate mosaic virus CSMV MSV GC_ID:1 ncbi_taxonomy Maize streak virus MSV GC_ID:1 ncbi_taxonomy Potato yellow mosaic virus GC_ID:1 tobacco yellow dwarf virus TobYDV ncbi_taxonomy Tobacco yellow dwarf virus tobacco yellow dwarf virus TobYDV GC_ID:1 ncbi_taxonomy Macrophoma WDV GC_ID:1 ncbi_taxonomy Wheat dwarf virus WDV GC_ID:1 bean dwarf mosaic geminivirus ncbi_taxonomy Bean dwarf mosaic virus bean dwarf mosaic geminivirus GC_ID:1 bean golden mosaic geminivirus ncbi_taxonomy Bean golden mosaic virus bean golden mosaic geminivirus BCTV GC_ID:1 beet curly top virus BCTV ncbi_taxonomy Beet curly top virus BCTV beet curly top virus BCTV GC_ID:1 ncbi_taxonomy Cryptosporiopsis GC_ID:1 bull's-eye rot ncbi_taxonomy Cryptosporiopsis curvispora Cryptosporiopsis malicorticis Gloeosporium malicorticis Pezicula malicorticis Neofabraea malicorticis bull's-eye rot Cryptosporiopsis curvispora Cryptosporiopsis malicorticis Gloeosporium malicorticis Pezicula malicorticis GC_ID:1 ncbi_taxonomy Aecidium globosum Gymnosporangium globosum Aecidium globosum GC_ID:1 ncbi_taxonomy unclassified Emaravirus Reoviridae RAM-1 GC_ID:1 Reoviruses ncbi_taxonomy Orthoreovirus RAM-1 Reoviruses NCBITaxon:70330 GC_ID:1 ncbi_taxonomy Phyllocoptes NCBITaxon:70331 GC_ID:1 ncbi_taxonomy Phyllocoptes gracilis GC_ID:1 ncbi_taxonomy Nemania GC_ID:1 ncbi_taxonomy Ustulina NCBITaxon:109383 NCBITaxon:180467 NCBITaxon:38491 NCBITaxon:5565 GC_ID:1 ncbi_taxonomy mitosporic Ascomycota Sclerotium mitosporic Ascomycota GC_ID:1 ncbi_taxonomy Sclerotinia sclerotiorum WM-A1 GC_ID:1 ncbi_taxonomy Sclerotinia trifoliorum 06CWM-G47 GC_ID:1 ncbi_taxonomy Penicillium aff. janthinellum P43 GC_ID:1 ncbi_taxonomy Aspergillus aff. fumigatus P8 GC_ID:1 Taphrina deformans CBS 356.35 ncbi_taxonomy Taphrina deformans PYCC 5710 Taphrina deformans CBS 356.35 GC_ID:1 plant reovirus 1 ncbi_taxonomy Phytoreovirus plant reovirus 1 WTV GC_ID:1 wound tumor virus, WTV ncbi_taxonomy Wound tumor virus WTV wound tumor virus, WTV GC_ID:1 ncbi_taxonomy Physodermataceae GC_ID:1 ncbi_taxonomy Physoderma GC_ID:1 plant reovirus 2 ncbi_taxonomy Fijivirus plant reovirus 2 NCBITaxon:984915 MRDV GC_ID:1 Maize rough dwarf fijivirus ncbi_taxonomy Maize rough dwarf virus MRDV Maize rough dwarf fijivirus RBSDV GC_ID:1 Rice black-streaked dwarf virus rice black-streaked dwarf virus RBSDV ncbi_taxonomy Rice black streaked dwarf virus RBSDV Rice black-streaked dwarf virus rice black-streaked dwarf virus RBSDV RDV GC_ID:1 rice dwarf phytoreovirus rice dwarf phytoreovirus RDV rice dwarf virus RDV ncbi_taxonomy Rice dwarf virus RDV rice dwarf phytoreovirus rice dwarf phytoreovirus RDV rice dwarf virus RDV GC_ID:1 Plant reovirus subgroup 3 ncbi_taxonomy Oryzavirus Plant reovirus subgroup 3 GC_ID:1 ncbi_taxonomy Partitiviridae GC_ID:1 Saccharomyces cerevisiae/ Pachysolen tannophilus fusant ncbi_taxonomy Saccharomyces cerevisiae/Pachysolen tannophilus fusant Saccharomyces cerevisiae/ Pachysolen tannophilus fusant GC_ID:1 ncbi_taxonomy Helgardia acuformis Mollisia acuformis Pseudocercosporella herpotrichoides var. acuformis Ramulispora acuformis Ramulispora herpotrichoides var. acuformis Tapesia acuformis Tapesia yallundae var. acuformis Oculimacula acuformis Helgardia acuformis Mollisia acuformis Pseudocercosporella herpotrichoides var. acuformis Ramulispora acuformis Ramulispora herpotrichoides var. acuformis Tapesia acuformis Tapesia yallundae var. acuformis NCBITaxon:1812910 GC_ID:1 ncbi_taxonomy Thyrospora solani Stemphylium solani Thyrospora solani GC_ID:11 Enterobacter cloacae subsp. dissolvens str. SDM Enterobacter cloacae subsp. dissolvens strain SDM ncbi_taxonomy Enterobacter cloacae subsp. dissolvens SDM Enterobacter cloacae subsp. dissolvens str. SDM Enterobacter cloacae subsp. dissolvens strain SDM NCBITaxon:109378 NCBITaxon:1181149 GC_ID:1 ncbi_taxonomy Kretzschmaria deusta Sphaeria deusta Ustulina deusta Kretzschmaria deusta Sphaeria deusta GC_ID:1 ncbi_taxonomy Sphaeria marginata Biscogniauxia marginata Sphaeria marginata NCBITaxon:122407 NCBITaxon:160268 GC_ID:1 ncbi_taxonomy Bionectria Clonostachys Bionectria NCBITaxon:307520 GC_ID:1 ncbi_taxonomy Nectriaceae GC_ID:11 PMID:10826825 PMID:12501368 PMID:18768634 PMID:19126716 ncbi_taxonomy Leifsonia GC_ID:1 ncbi_taxonomy Claviceps purpurea 20.1 GC_ID:1 ncbi_taxonomy Venturiales NCBITaxon:1111113 GC_ID:1 ncbi_taxonomy Sympoventuriaceae GC_ID:1 ncbi_taxonomy Phytophthora erythroseptica GC_ID:1 negative-sense genome single-stranded RNA viruses ncbi_taxonomy Mononegavirales negative-sense genome single-stranded RNA viruses GC_ID:1 ncbi_taxonomy Physaridae Physaraceae Physaridae GC_ID:11 PMID:22408247 Streptomyces acidiscabies str. 84-104 Streptomyces acidiscabies strain 84-104 ncbi_taxonomy Streptomyces acidiscabies 84-104 Streptomyces acidiscabies str. 84-104 Streptomyces acidiscabies strain 84-104 GC_ID:11 ncbi_taxonomy Sphingomonas sp. alfa40b-PCA-E3-2 GC_ID:1 ncbi_taxonomy Peltella GC_ID:1 ncbi_taxonomy Achlya conspicua GC_ID:1 ncbi_taxonomy Aphanomyces cochlioides NCBITaxon:2052557 GC_ID:1 ncbi_taxonomy Brachysporium trifolii Curvularia trifolii Brachysporium trifolii NCBITaxon:190938 GC_ID:1 ncbi_taxonomy Arthrinium NCBITaxon:451834 GC_ID:1 ncbi_taxonomy Fungi incertae sedis GC_ID:1 ncbi_taxonomy Epicoccum nigrum P16 GC_ID:1 ncbi_taxonomy Cuscuta pentagona GC_ID:1 ncbi_taxonomy Celery mosaic virus ONMV GC_ID:1 ncbi_taxonomy Oat necrotic mottle virus ONMV GC_ID:1 ncbi_taxonomy Ramularia GC_ID:1 ncbi_taxonomy Clisosporium fragariae Coniothyrium fragariae Coniella fragariae Clisosporium fragariae Coniothyrium fragariae GC_ID:1 ncbi_taxonomy Elsinoe brasiliensis Elsinoe brasiliensis Elsinoe brasiliensis GC_ID:1 PMID:28373739 ncbi_taxonomy Sphaceloma arachidis Elsinoe arachidis Sphaceloma arachidis GC_ID:1 Macrophomina phaseolina str. MS6 Macrophomina phaseolina strain MS6 ncbi_taxonomy Macrophomina phaseolina MS6 Macrophomina phaseolina str. MS6 Macrophomina phaseolina strain MS6 GC_ID:1 PMID:16186241 ncbi_taxonomy Rhabdoviridae GC_ID:1 ncbi_taxonomy Aecidium sp. cui-1 GC_ID:1 ncbi_taxonomy Ganoderma lucidum Xiangnong No.1 GC_ID:1 ncbi_taxonomy Ustilago hordei Uh4857-4 GC_ID:1 Plant rhabdovirus subgroup A ncbi_taxonomy Cytorhabdovirus Plant rhabdovirus subgroup A GC_ID:1 ncbi_taxonomy Aspergillaceae GC_ID:1 ncbi_taxonomy Thermoascaceae GC_ID:1 ncbi_taxonomy Cuscuta glomerata GC_ID:1 ncbi_taxonomy Pleurotus ostreatus PC9 GC_ID:11 ncbi_taxonomy Corynebacterium sp. mare20 GC_ID:1 ncbi_taxonomy Caryophylleae GC_ID:1 ncbi_taxonomy Cerrena unicolor 303 GC_ID:1 ncbi_taxonomy Trametes versicolor 84 GC_ID:1 ncbi_taxonomy Nigrospora NCBITaxon:1460876 NCBITaxon:2047961 GC_ID:1 ncbi_taxonomy Nigrospora sphaerica GC_ID:1 ncbi_taxonomy Tylenchidae GC_ID:1 ncbi_taxonomy Anguininae NCBITaxon:185622 GC_ID:1 ncbi_taxonomy Mesoanguina Subanguina Mesoanguina GC_ID:1 ncbi_taxonomy Subanguina radicicola GC_ID:1 ncbi_taxonomy Anguinidae GC_ID:1 ncbi_taxonomy Beet mosaic virus GC_ID:1 ncbi_taxonomy Anomioidea GC_ID:1 ncbi_taxonomy Monascus purpureus NRRL 1596 GC_ID:1 ncbi_taxonomy Brevicellicium GC_ID:1 ncbi_taxonomy Odontia olivascens Brevicellicium olivascens Odontia olivascens GC_ID:1 ncbi_taxonomy Cercospora longissima GC_ID:1 ncbi_taxonomy Pythium iwayamae Globisporangium iwayamae Pythium iwayamae GC_ID:1 ncbi_taxonomy Pythium paddicum Globisporangium paddicum Pythium paddicum GC_ID:1 ncbi_taxonomy Pythium pulchrum Globisporangium pulchrum Pythium pulchrum GC_ID:1 ncbi_taxonomy Meloidogyne cruciani GC_ID:1 ncbi_taxonomy Monascus ruber NRRL 1597 GC_ID:1 ncbi_taxonomy Phacidiopycnis sp. stklk7 GC_ID:1 ncbi_taxonomy Pichiaceae GC_ID:1 ncbi_taxonomy Peronospora viciae f. sp. pisi Peronospora pisi Peronospora viciae f. sp. pisi NCBITaxon:599729 GC_ID:1 ncbi_taxonomy Wickerhamomycetaceae Phaffomycetaceae Wickerhamomycetaceae NCBITaxon:124427 GC_ID:1 ncbi_taxonomy Claviceps virens Ustilago virens Villosiclava virens Ustilaginoidea virens Claviceps virens Ustilago virens Villosiclava virens GC_ID:1 ncbi_taxonomy unclassified Solanaceae GC_ID:1 ncbi_taxonomy Aspergillus glaucus CBS 516.65 INSV GC_ID:1 Impatiens necrotic spot virus INSV ncbi_taxonomy Impatiens necrotic spot virus INSV Impatiens necrotic spot virus INSV NCBITaxon:6795 GC_ID:1 ncbi_taxonomy Eubrachyura NCBITaxon:29963 NCBITaxon:6773 NCBITaxon:6803 GC_ID:1 ncbi_taxonomy Brachyrhyncha Heterotremata Brachyrhyncha GC_ID:11 ncbi_taxonomy environmental Halophage eHP-E5 GC_ID:1 ncbi_taxonomy Corallomycetella NCBITaxon:57156 NCBITaxon:913591 GC_ID:1 ncbi_taxonomy Corallomyces mauritiicola Nectria mauritiicola Rhizostilbella hibisci Sphaerostilbe repens Corallomycetella repens Corallomyces mauritiicola Nectria mauritiicola Rhizostilbella hibisci Sphaerostilbe repens GC_ID:1 ncbi_taxonomy Lycoperdon tritici Ustilago segetum var. tritici Ustilago segetum var. tritici (Pers.) Brunaud, 1878 Ustilago tritici Lycoperdon tritici Ustilago segetum var. tritici Ustilago segetum var. tritici (Pers.) Brunaud, 1878 NCBITaxon:1335946 NCBITaxon:2773093 NCBITaxon:42664 GC_ID:1 ncbi_taxonomy Fusarium moniliforme Fusarium moniliforme J. Sheld., 1904 Gibberella moniliformis Oospora verticillioides Fusarium verticillioides Fusarium moniliforme Fusarium moniliforme J. Sheld., 1904 Gibberella moniliformis Oospora verticillioides GC_ID:1 ncbi_taxonomy Trachysphaera GC_ID:1 ncbi_taxonomy Trachysphaeridae NCBITaxon:1081645 NCBITaxon:2282360 NCBITaxon:27317 NCBITaxon:426520 NCBITaxon:426521 GC_ID:1 ncbi_taxonomy Dipodascus geotrichum Endomyces geotrichum Galactomyces candidus Galactomyces candidus de Hoog & M.T. Smith, 2004 Galactomyces geotrichum (E.E. Butler & L.J. Petersen) Redhead & Malloch, 1977 Oospora lactis Geotrichum candidum Dipodascus geotrichum Endomyces geotrichum Galactomyces candidus Galactomyces candidus de Hoog & M.T. Smith, 2004 Galactomyces geotrichum (E.E. Butler & L.J. Petersen) Redhead & Malloch, 1977 Oospora lactis NCBITaxon:34410 GC_ID:1 ncbi_taxonomy Colletotrichum sublineola Henn. ex Sacc. & Trotter, 1913 Colletotrichum sublineola Colletotrichum sublineola Henn. ex Sacc. & Trotter, 1913 GC_ID:1 ncbi_taxonomy Cytospora GC_ID:1 ncbi_taxonomy Teleostomi NCBITaxon:40673 GC_ID:1 bony vertebrates ncbi_taxonomy Euteleostomi bony vertebrates GC_ID:1 ncbi_taxonomy Asperisporium GC_ID:1 ncbi_taxonomy Cercospora caricae Fusicladium caricae Pucciniopsis caricae Asperisporium caricae Cercospora caricae Fusicladium caricae Pucciniopsis caricae GC_ID:11 Burkholderia glumae str. AU6208 Burkholderia glumae strain AU6208 ncbi_taxonomy Burkholderia glumae AU6208 Burkholderia glumae str. AU6208 Burkholderia glumae strain AU6208 GC_ID:1 ncbi_taxonomy Rosoideae incertae sedis NCBITaxon:75887 GC_ID:1 Nelson Bay virus Nelson bay reovirus ncbi_taxonomy Nelson Bay orthoreovirus Nelson Bay virus Nelson bay reovirus NCBITaxon:37464 GC_ID:1 ncbi_taxonomy Plenodomus GC_ID:1 ncbi_taxonomy Caliothrips GC_ID:1 ncbi_taxonomy Puccinia graminis f. sp. tritici 87KEN3018-4 GC_ID:11 ncbi_taxonomy Agrobacterium biovar 1 Agrobacterium tumefaciens complex Agrobacterium biovar 1 GC_ID:1 ncbi_taxonomy Fragariinae GC_ID:1 ncbi_taxonomy Pentazonia GC_ID:1 ncbi_taxonomy Alternaria humuli NCBITaxon:119063 GC_ID:11 PMID:16403855 ncbi_taxonomy Burkholderia group Burkholderiaceae Burkholderia group GC_ID:1 ncbi_taxonomy Enoplea NCBITaxon:27837 GC_ID:1 ncbi_taxonomy Adenophorea Chromadorea Adenophorea Luteoviridae GC_ID:1 Betaluteovirus Potleavirus luteovirus subgroup II ncbi_taxonomy Polerovirus Betaluteovirus Potleavirus luteovirus subgroup II GC_ID:1 mixed EST libraries ncbi_taxonomy mixed EST libraries <eukaryotes> mixed EST libraries NCBITaxon:36030 GC_ID:1 ncbi_taxonomy Hansenula subpelliculosa Pichia subpelliculosa Wickerhamomyces subpelliculosa Wickerhamomyces subpelliculosus Hansenula subpelliculosa Pichia subpelliculosa Wickerhamomyces subpelliculosa GC_ID:11 ncbi_taxonomy Cassava witches'-broom phytoplasma GC_ID:1 ncbi_taxonomy unclassified Anulavirus GC_ID:1 ncbi_taxonomy Dendrophoma GC_ID:1 ncbi_taxonomy Sweet potato leaf curl China virus GC_ID:11 ncbi_taxonomy Pseudomonas marginalis ICMP 9505 CarMV GC_ID:1 ncbi_taxonomy Carnation mottle virus CarMV TCV GC_ID:1 ncbi_taxonomy Turnip crinkle virus TCV NCBITaxon:33193 GC_ID:1 ncbi_taxonomy Alternaria raphani Alternaria japonica Alternaria raphani NCBITaxon:1245774 NCBITaxon:1245785 NCBITaxon:1403605 NCBITaxon:1704140 NCBITaxon:1862904 NCBITaxon:2048498 NCBITaxon:2283412 NCBITaxon:509244 NCBITaxon:631442 GC_ID:1 ncbi_taxonomy Helminthosporium tenuissimum Alternaria tenuissima Helminthosporium tenuissimum NCBITaxon:230005 GC_ID:1 ncbi_taxonomy Bipolaris pedicellata Drechslera pedicellata Helminthosporium pedicellatum Setosphaeria pedicellata Trichometasphaeria pedicellata Exserohilum pedicellatum Bipolaris pedicellata Drechslera pedicellata Helminthosporium pedicellatum Setosphaeria pedicellata Trichometasphaeria pedicellata NCBITaxon:1571747 NCBITaxon:162404 NCBITaxon:2005006 NCBITaxon:2005008 NCBITaxon:2005010 NCBITaxon:235068 NCBITaxon:235071 NCBITaxon:33177 NCBITaxon:95730 NCBITaxon:95731 GC_ID:1 PMID:28663603 ncbi_taxonomy Helminthosporium vesicarium Helmisporium vesicarium Macrosporium vesicarium Pleospora alfalfae Pleospora herbarum Pleospora herbarum var. herbarum Pleospora pomorum Pleospora sedicola Pleospora tomatonis Sphaeria herbarum Stemphylium alfalfae Stemphylium brassicicola Stemphylium cremanthodii Stemphylium herbarum Stemphylium sedicola Stemphylium tomatonis Stemphylium vesicarium Helminthosporium vesicarium Helmisporium vesicarium Macrosporium vesicarium Pleospora alfalfae Pleospora herbarum Pleospora herbarum var. herbarum Pleospora pomorum Pleospora sedicola Pleospora tomatonis Sphaeria herbarum Stemphylium alfalfae Stemphylium brassicicola Stemphylium cremanthodii Stemphylium herbarum Stemphylium sedicola Stemphylium tomatonis GC_ID:1 ncbi_taxonomy Macrosporium sarciniforme Stemphylium sarcinaeforme Stemphylium sarciniforme Macrosporium sarciniforme Stemphylium sarcinaeforme GC_ID:1 PMID:24014900 ncbi_taxonomy Alternaria sect. Ulocladium GC_ID:1 ncbi_taxonomy Ulocladium atrum Alternaria atra Ulocladium atrum NCBITaxon:117170 NCBITaxon:117173 NCBITaxon:119851 NCBITaxon:120013 NCBITaxon:5273 NCBITaxon:86803 GC_ID:1 ncbi_taxonomy Ustilago kolleri Ustilago segetum Ustilago hordei Ustilago kolleri Ustilago segetum GC_ID:1 ncbi_taxonomy Verticillium dahliae JR2 GC_ID:1 Luteovirus subgroup I ncbi_taxonomy Luteovirus Luteovirus subgroup I BYDV GC_ID:1 barley yellow dwarf virus BYDV barley yellow dwarf virus, BYDV ncbi_taxonomy Barley yellow dwarf virus BYDV barley yellow dwarf virus BYDV barley yellow dwarf virus, BYDV BLRV GC_ID:1 Bean leaf roll virus ncbi_taxonomy Bean leafroll virus BLRV Bean leaf roll virus BWYV GC_ID:1 Beet western yellow virus ncbi_taxonomy Beet western yellows virus BWYV Beet western yellow virus PLRV GC_ID:1 Potato leaf roll virus Potato leaf-roll virus ncbi_taxonomy Potato leafroll virus PLRV Potato leaf roll virus Potato leaf-roll virus GC_ID:1 ncbi_taxonomy Albugo candida Ac 2V GC_ID:1 ncbi_taxonomy Soybean dwarf virus GC_ID:1 ncbi_taxonomy Eupulmonata GC_ID:1 ncbi_taxonomy Marafivirus GC_ID:1 ncbi_taxonomy Pleospora tarda Stemphylium botryosum Pleospora tarda GC_ID:1 ncbi_taxonomy Ustilago aegilopsidis Ustilago nigra Ustilago avenae Ustilago aegilopsidis Ustilago nigra GC_ID:1 ncbi_taxonomy Ecdysozoa GC_ID:1 ncbi_taxonomy Lophotrochozoa GC_ID:1 ncbi_taxonomy Trematosphaeriaceae GC_ID:1 ncbi_taxonomy Aphelenchoidea GC_ID:1 ncbi_taxonomy Pythiales GC_ID:1 Phaeosphaeria nodorum Sn4 ncbi_taxonomy Parastagonospora nodorum Sn4 Phaeosphaeria nodorum Sn4 NCBITaxon:12469 GC_ID:1 Velvet tobacco mottle virus group ncbi_taxonomy Sobemovirus Velvet tobacco mottle virus group SBMV GC_ID:1 southern bean mosaic virus, SBMV ncbi_taxonomy Southern bean mosaic virus SBMV southern bean mosaic virus, SBMV GC_ID:1 ncbi_taxonomy Tombusvirus TBSV GC_ID:1 tomato bushy stunt tombusvirus TBSV ncbi_taxonomy Tomato bushy stunt virus TBSV tomato bushy stunt tombusvirus TBSV NCBITaxon:83182 GC_ID:1 ncbi_taxonomy Fusicoccum amygdali Phomopsis amygdali Diaporthe amygdali Fusicoccum amygdali Phomopsis amygdali GC_ID:1 ncbi_taxonomy Tymovirus GC_ID:1 ncbi_taxonomy Closterovirus NCBITaxon:31714 NCBITaxon:31775 BYV SBYV GC_ID:1 sugar beet yellows virus, SBYV ncbi_taxonomy Sugar beet yellows virus Beet yellows virus BYV SBYV sugar beet yellows virus, SBYV Sugar beet yellows virus GC_ID:1 Citrus tristeza closterovirus citrus tristeza closterovirus CTV citrus tristeza virus CTV ncbi_taxonomy Citrus tristeza virus Citrus tristeza closterovirus citrus tristeza closterovirus CTV citrus tristeza virus CTV GC_ID:1 ncbi_taxonomy Phyllosticta NCBITaxon:1002998 NCBITaxon:122092 NCBITaxon:2306440 GC_ID:1 ncbi_taxonomy Guignardia endophyllicola Guignardia mangiferae Phyllosticta capitalensis Guignardia endophyllicola Guignardia mangiferae GC_ID:1 ncbi_taxonomy Carlavirus CLV GC_ID:1 ncbi_taxonomy Carnation latent virus CLV PVM GC_ID:1 ncbi_taxonomy Potato virus M PVM GC_ID:1 Pepino latent virus potato virus S PVS ncbi_taxonomy Potato virus S Pepino latent virus potato virus S PVS GC_ID:1 Shallot latent carlavirus ncbi_taxonomy Shallot latent virus Shallot latent carlavirus GC_ID:1 ncbi_taxonomy Capillovirus ACLSV GC_ID:1 Apple chlorotic leaf spot trichovirus Apple chlorotic leafspot virus apple chlorotic leaf spot virus ACLSV-A ncbi_taxonomy Apple chlorotic leaf spot virus ACLSV Apple chlorotic leaf spot trichovirus Apple chlorotic leafspot virus apple chlorotic leaf spot virus ACLSV-A GC_ID:1 ncbi_taxonomy Potexvirus CYMV GC_ID:1 Clover yellow mosaic potexvirus ncbi_taxonomy Clover yellow mosaic virus CYMV Clover yellow mosaic potexvirus GC_ID:1 Cymbidium mosaic potexvirus ncbi_taxonomy Cymbidium mosaic virus Cymbidium mosaic potexvirus PMV GC_ID:1 Papaya mosaic potexvirus ncbi_taxonomy Papaya mosaic virus PMV Papaya mosaic potexvirus PAMV GC_ID:1 potato aucuba mosaic potexvirus potato aucuba mosaic potexvirus PAMV potato aucuba mosaic virus PAMV ncbi_taxonomy Potato aucuba mosaic virus PAMV potato aucuba mosaic potexvirus potato aucuba mosaic potexvirus PAMV potato aucuba mosaic virus PAMV PVX GC_ID:1 potato virus X, PVX ncbi_taxonomy Potato virus X PVX potato virus X, PVX GC_ID:1 ncbi_taxonomy Penicillium chrysogenum KF-25 WClMV GC_ID:1 ncbi_taxonomy White clover mosaic virus WClMV GC_ID:1 ncbi_taxonomy Depazea batatas Phyllosticta batatas Phomopsis ipomoeae-batatas Depazea batatas Phyllosticta batatas GC_ID:1 ncbi_taxonomy Potyvirus BCMV GC_ID:1 bean common mosaic virus BCMV bean common mosaic virus, BCMV ncbi_taxonomy Bean common mosaic virus BCMV bean common mosaic virus BCMV bean common mosaic virus, BCMV NCBITaxon:36398 BYMV GC_ID:1 Pea mosaic virus bean yellow mosaic potyvirus bean yellow mosaic virus BYMV bean yellow mosaic virus, BYMV pea mosaic potyvirus PMV-I ncbi_taxonomy Bean yellow mosaic virus BYMV Pea mosaic virus bean yellow mosaic potyvirus bean yellow mosaic virus BYMV bean yellow mosaic virus, BYMV pea mosaic potyvirus PMV-I ClYVV GC_ID:1 clover yellow vein potyvirus clover yellow vein virus CYVV ncbi_taxonomy Clover yellow vein virus ClYVV clover yellow vein potyvirus clover yellow vein virus CYVV CABMV GC_ID:1 Cowpea aphid-borne mosaic potyvirus adzuki bean mosaic virus cowpea Moroccan aphid-borne mosaic virus ncbi_taxonomy Cowpea aphid-borne mosaic virus CABMV Cowpea aphid-borne mosaic potyvirus adzuki bean mosaic virus cowpea Moroccan aphid-borne mosaic virus GarMV GC_ID:1 garlic mosaic virus, GarMV ncbi_taxonomy Garlic mosaic virus GarMV garlic mosaic virus, GarMV LMV GC_ID:1 Lettuce mosaic potyvirus Lettuce mosaic potyvirus (LMV) lettuce mosaic virus, LMV ncbi_taxonomy Lettuce mosaic virus LMV Lettuce mosaic potyvirus Lettuce mosaic potyvirus (LMV) lettuce mosaic virus, LMV PRSV GC_ID:1 Papaya ring spot virus papaya ringspot potyvirus papaya ringspot virus PRSV papaya ringspot virus, PRSV watermelon mosaic virus 1 ncbi_taxonomy Papaya ringspot virus PRSV Papaya ring spot virus papaya ringspot potyvirus papaya ringspot virus PRSV papaya ringspot virus, PRSV watermelon mosaic virus 1 PSbMV GC_ID:1 pea seed-borne mosaic potyvirus ncbi_taxonomy Pea seed-borne mosaic virus PSbMV pea seed-borne mosaic potyvirus PEMV GC_ID:1 pepper mottle virus PepMoV ncbi_taxonomy Pepper mottle virus PEMV pepper mottle virus PepMoV PPV GC_ID:1 Plum pox potyvirus plum pox virus PPV plum pox virus, PPV ncbi_taxonomy Plum pox virus PPV Plum pox potyvirus plum pox virus PPV plum pox virus, PPV PVA GC_ID:1 Potato A potyvirus potato virus A PVA potato virus A, PVA ncbi_taxonomy Potato virus A PVA Potato A potyvirus potato virus A PVA potato virus A, PVA GC_ID:1 ncbi_taxonomy Oidium sp. pm-103 SbMV GC_ID:1 soybean mosaic virus SMV soybean mosaic virus, SbMV ncbi_taxonomy Soybean mosaic virus SbMV soybean mosaic virus SMV soybean mosaic virus, SbMV SCMV GC_ID:1 sugarcane mosaic potyvirus sugarcane mosaic virus SCMV sugarcane mosaic virus, SCMV ncbi_taxonomy Sugarcane mosaic virus SCMV sugarcane mosaic potyvirus sugarcane mosaic virus SCMV sugarcane mosaic virus, SCMV TEV GC_ID:1 tobacco etch potyvirus ncbi_taxonomy Tobacco etch virus TEV tobacco etch potyvirus GC_ID:11 PMID:11155980 PMID:9779605 ncbi_taxonomy Pectobacterium TVMV GC_ID:1 tobacco vein mottling virus (TVMV) ncbi_taxonomy Tobacco vein mottling virus TVMV tobacco vein mottling virus (TVMV) GC_ID:1 South African passiflora virus SAPV ncbi_taxonomy South African passiflora virus South African passiflora virus SAPV GC_ID:1 Tobamoviridae ncbi_taxonomy Tobamovirus Tobamoviridae CCGMV GC_ID:1 ncbi_taxonomy Cucumber green mottle mosaic virus CCGMV GC_ID:1 ncbi_taxonomy Pythium aphanidermatum DAOM BR444 GC_ID:1 ncbi_taxonomy Globisporangium irregulare DAOM BR486 GC_ID:1 Pythium vexans DAOM BR484 ncbi_taxonomy Phytopythium vexans DAOM BR484 Pythium vexans DAOM BR484 GC_ID:11 ncbi_taxonomy Dickeya chrysanthemi NCPPB 516 GC_ID:1 ncbi_taxonomy Cercospora beticola ORSV GC_ID:1 Odontoglossum ringspot tobamovirus ncbi_taxonomy Odontoglossum ringspot virus ORSV Odontoglossum ringspot tobamovirus GC_ID:1 pepper mild mottle virus PMMV-S ncbi_taxonomy Pepper mild mottle virus pepper mild mottle virus PMMV-S GC_ID:11 PMID:11321122 PMID:11837318 purple bacteria purple bacteria and relatives purple non-sulfur bacteria purple photosynthetic bacteria purple photosynthetic bacteria and relatives ncbi_taxonomy "Alphaproteobacteriota" Whitman et al. 2018 Alphaproteobacteraeota Alphaproteobacteriota Proteobacteria Proteobacteriota proteobacteria Proteobacteria Pseudomonadota purple bacteria purple bacteria and relatives purple non-sulfur bacteria purple photosynthetic bacteria purple photosynthetic bacteria and relatives "Alphaproteobacteriota" Whitman et al. 2018 Alphaproteobacteraeota Alphaproteobacteriota Proteobacteria Proteobacteriota proteobacteria TMV GC_ID:1 tobacco mosaic virus TMV tobacco mosaic virus, TMV ncbi_taxonomy Tobacco mosaic virus TMV tobacco mosaic virus TMV tobacco mosaic virus, TMV GC_ID:1 ncbi_taxonomy Tomato mosaic virus GC_ID:1 ncbi_taxonomy Comovirus GC_ID:1 Andean potato mottle virus APMV ncbi_taxonomy Andean potato mottle virus Andean potato mottle virus APMV NCBITaxon:12265 BPMV GC_ID:1 Bean-pod mottle virus ncbi_taxonomy Bean pod mottle virus BPMV Bean-pod mottle virus GC_ID:1 cowpea severe mosaic virus CPSMV ncbi_taxonomy Cowpea severe mosaic virus cowpea severe mosaic virus CPSMV GC_ID:1 Dianthoviridae ncbi_taxonomy Dianthovirus Dianthoviridae GC_ID:1 carnation ringspot virus CRSV ncbi_taxonomy Carnation ringspot virus carnation ringspot virus CRSV GC_ID:1 ncbi_taxonomy Fabavirus GC_ID:1 ncbi_taxonomy Nepovirus AMV GC_ID:1 nepovirus arabis mosaic virus ArMV ncbi_taxonomy Arabis mosaic virus AMV nepovirus arabis mosaic virus ArMV GC_ID:1 Fusarium proliferatum var. proliferatum ET1 ncbi_taxonomy Fusarium proliferatum ET1 Fusarium proliferatum var. proliferatum ET1 GFLV GC_ID:1 grapevine fanleaf nepovirus nepovirus grapevine fanleaf virus GFLV ncbi_taxonomy Grapevine fanleaf virus GFLV grapevine fanleaf nepovirus nepovirus grapevine fanleaf virus GFLV TBRV GC_ID:1 nepovirus tomato blackring virus TBRV ncbi_taxonomy Tomato black ring virus TBRV nepovirus tomato blackring virus TBRV TOMRSV GC_ID:1 ncbi_taxonomy Tomato ringspot virus TOMRSV GC_ID:1 ncbi_taxonomy Tobacco ringspot virus GC_ID:1 ncbi_taxonomy Furovirus GC_ID:1 ncbi_taxonomy Tobravirus GC_ID:1 Pea early browning virus pea early browning virus PEBV ncbi_taxonomy Pea early-browning virus Pea early browning virus pea early browning virus PEBV TRV GC_ID:1 Tobacco Rattle Tobravirus tobacco rattle virus TRV tobacco rattle virus, TRV ncbi_taxonomy Tobacco rattle virus TRV Tobacco Rattle Tobravirus tobacco rattle virus TRV tobacco rattle virus, TRV GC_ID:1 ncbi_taxonomy Hydnodontaceae GC_ID:1 ncbi_taxonomy Bromovirus NCBITaxon:1081100 NCBITaxon:5119 GC_ID:1 ncbi_taxonomy Leucostoma leucostoma Leucostoma persoonii Sphaeria leucostoma Valsa leucostoma Valsa persoonii Cytospora leucostoma Leucostoma leucostoma Leucostoma persoonii Sphaeria leucostoma Valsa leucostoma Valsa persoonii GC_ID:1 ncbi_taxonomy Broad bean mottle virus BMV GC_ID:1 ncbi_taxonomy Brome mosaic virus BMV CCMV GC_ID:1 ncbi_taxonomy Cowpea chlorotic mottle virus CCMV GC_ID:1 ncbi_taxonomy Cucumovirus CMV GC_ID:1 cucumber mosaic cucumovirus cucumber mosaic cucumovirus CMV cucumber mosaic virus CMV cucumber mosaic virus, CMV ncbi_taxonomy Cucumber mosaic virus CMV cucumber mosaic cucumovirus cucumber mosaic cucumovirus CMV cucumber mosaic virus CMV cucumber mosaic virus, CMV NCBITaxon:74412 NCBITaxon:95734 GC_ID:1 ncbi_taxonomy Bipolaris hawaiiensis Cochliobolus hawaiiensis Pseudocochliobolus hawaiiensis Curvularia hawaiiensis Bipolaris hawaiiensis Cochliobolus hawaiiensis Pseudocochliobolus hawaiiensis GC_ID:1 peanut stunt cucumovirus peanut stunt virus PSV ncbi_taxonomy Peanut stunt virus peanut stunt cucumovirus peanut stunt virus PSV NCBITaxon:346224 TAV GC_ID:1 Chrysanthemum aspermy virus tomato aspermy virus TAV-B ncbi_taxonomy Tomato aspermy virus TAV Chrysanthemum aspermy virus tomato aspermy virus TAV-B GC_ID:1 ncbi_taxonomy Ilarvirus TSV GC_ID:1 ncbi_taxonomy Tobacco streak virus TSV ApMV GC_ID:1 ncbi_taxonomy Apple mosaic virus ApMV GC_ID:1 Alfalfa mosaic virus group ncbi_taxonomy Alfamovirus Alfalfa mosaic virus group AMV GC_ID:1 ncbi_taxonomy Alfalfa mosaic virus AMV GC_ID:11 PMID:19936829 ncbi_taxonomy Pseudomonas oleovorans/pseudoalcaligenes group GC_ID:1 ncbi_taxonomy Hordeivirus BSMV GC_ID:1 barley stripe mosaic virus, BSMV ncbi_taxonomy Barley stripe mosaic virus BSMV barley stripe mosaic virus, BSMV GC_ID:1 ncbi_taxonomy Tepovirus GC_ID:1 ncbi_taxonomy Tenuivirus RSV Rice stripe virus rice stripe virus RSV Rice stripe tenuivirus RSV Rice stripe virus rice stripe virus RSV RHBV Rice hoja blanca virus Rice hoja blanca tenuivirus RHBV Rice hoja blanca virus GC_ID:11 unclassified bacteriophages unclassified phage unclassified phages ncbi_taxonomy bacterial virus bacterial viruses prokaryotic virus unclassified bacterial viruses unclassified bacteriophages unclassified phage unclassified phages bacterial virus bacterial viruses prokaryotic virus GC_ID:1 ncbi_taxonomy Peronospora parasitica Hyaloperonospora parasitica Peronospora parasitica GC_ID:1 ncbi_taxonomy Neoteleostei GC_ID:1 ncbi_taxonomy Eurypterygii Eurypterygia Eurypterygii GC_ID:1 ncbi_taxonomy Ctenosquamata GC_ID:1 ncbi_taxonomy Acanthomorpha Acanthomorphata Acanthomorpha GC_ID:1 ncbi_taxonomy Euacanthomorpha Euacanthomorphacea Euacanthomorpha GC_ID:11 PMID:23334881 ncbi_taxonomy Proteobacteria gamma subdivision Pseudomonadia Purple bacteria, gamma subdivision g-proteobacteria gamma proteobacteria gamma subdivision gamma subgroup Gammaproteobacteria Proteobacteria gamma subdivision Pseudomonadia Purple bacteria, gamma subdivision g-proteobacteria gamma proteobacteria gamma subdivision gamma subgroup GC_ID:1 ncbi_taxonomy Phyllosticta sp. zjl-1 NCBITaxon:31968 GC_ID:11 PMID:10555317 PMID:11034484 PMID:11542017 PMID:15143038 PMID:25403554 PMID:37409558 Firmicutes low G+C Gram-positive bacteria low GC Gram+ ncbi_taxonomy "Firmicutes" corrig. Gibbons and Murray 1978 (Approved Lists 1980) Bacillaeota Bacillota corrig. Gibbons and Murray 2021 Bacillus/Clostridium group Clostridium group firmicutes Firmicuteota Low G+C firmicutes clostridial firmicutes firmicutes Bacillota Firmicutes low G+C Gram-positive bacteria low GC Gram+ "Firmicutes" corrig. Gibbons and Murray 1978 (Approved Lists 1980) Bacillaeota Bacillota corrig. Gibbons and Murray 2021 Bacillus/Clostridium group Clostridium group firmicutes Firmicuteota Low G+C firmicutes clostridial firmicutes firmicutes NCBITaxon:112118 NCBITaxon:113627 NCBITaxon:60497 GC_ID:1 ncbi_taxonomy Chalara elegans Chalara elegans Nag Raj & W.B. Kendr., 1975 Thielavia basicola Thielaviopsis basicola Torula basicola Berkeleyomyces basicola Chalara elegans Chalara elegans Nag Raj & W.B. Kendr., 1975 Thielavia basicola Thielaviopsis basicola Torula basicola GC_ID:1 Discula umbrinella ncbi_taxonomy Gloeosporium umbrinellum Sphaeria errabunda Apiognomonia errabunda Discula umbrinella Gloeosporium umbrinellum Sphaeria errabunda GC_ID:1 ncbi_taxonomy Garlic virus D GC_ID:1 ncbi_taxonomy Garlic virus C GC_ID:1 ncbi_taxonomy Garlic virus B GC_ID:1 ncbi_taxonomy Garlic virus A GC_ID:1 ncbi_taxonomy Ustilaginoidea RBDV GC_ID:1 raspberry bushy dwarf virus RBDV ncbi_taxonomy Raspberry bushy dwarf virus RBDV raspberry bushy dwarf virus RBDV GC_ID:1 ncbi_taxonomy Uromyces appendiculatus SWBR1 GC_ID:1 ncbi_taxonomy Phakopsora pachyrhizi Thai1 BaYMV GC_ID:1 barley yellow mosaic virus, BaYMV ncbi_taxonomy Barley yellow mosaic virus BaYMV barley yellow mosaic virus, BaYMV GC_ID:1 barley mild mosaic virus BaMMV ncbi_taxonomy Barley mild mosaic virus barley mild mosaic virus BaMMV GC_ID:1 ncbi_taxonomy Cercospora aff. canescens CBS 153.55 GC_ID:1 ncbi_taxonomy Paraphaeosphaeria GC_ID:1 ncbi_taxonomy Sphaeria michotii Paraphaeosphaeria michotii Sphaeria michotii GC_ID:1 Armillaria solidipes RNA1 ncbi_taxonomy Armillaria ostoyae RNA1 Armillaria solidipes RNA1 GC_ID:1 ncbi_taxonomy Massarineae GC_ID:1 ncbi_taxonomy Cylindrocarpon sp. lbl4 GC_ID:1 ncbi_taxonomy Ceratorhiza GC_ID:1 ncbi_taxonomy Neofavolus GC_ID:1 ncbi_taxonomy Alternaria solani f. sp. lycopersici CLRV GC_ID:1 Cherry leafroll virus cherry leaf roll nepovirus cherry leaf roll nepovirus CLRV ncbi_taxonomy Cherry leaf roll virus CLRV Cherry leafroll virus cherry leaf roll nepovirus cherry leaf roll nepovirus CLRV GC_ID:1 ncbi_taxonomy Puccinia striiformis f. sp. tritici 87/7 GC_ID:1 ncbi_taxonomy Colletotrichum gossypii GC_ID:1 Cochliobolus lunatus CX-3 ncbi_taxonomy Curvularia lunata CX-3 Cochliobolus lunatus CX-3 GC_ID:1 Magnaporthe grisea strain W97-11 ncbi_taxonomy Pyricularia grisea W97-11 Magnaporthe grisea strain W97-11 GC_ID:1 ncbi_taxonomy Rechingeriella eutypoides Monosporascus eutypoides Rechingeriella eutypoides GC_ID:11 ncbi_taxonomy Bacillus subtilis MB73/2 GC_ID:1 ncbi_taxonomy Entyloma oryzae Eballistra oryzae Entyloma oryzae GC_ID:1 ncbi_taxonomy Curvularia aff. inaequalis HM-2012 GC_ID:1 ncbi_taxonomy Pyricularia oryzae KJ201 GC_ID:1 ncbi_taxonomy Mucor circinelloides B8987 GC_ID:1 ncbi_taxonomy Rhizopus stolonifer B9770 GC_ID:1 ncbi_taxonomy Septoria cucurbitacearum GC_ID:1 ncbi_taxonomy Rhizopus arrhizus 99-133 RRV GC_ID:1 raspberry ringspot virus RRV ncbi_taxonomy Raspberry ringspot virus RRV raspberry ringspot virus RRV GC_ID:1 ncbi_taxonomy Phaeosphaeria sacchari Leptosphaeria sacchari Phaeosphaeria sacchari GC_ID:1 ncbi_taxonomy Ovulariopsis NCBITaxon:128715 GC_ID:1 ncbi_taxonomy Dugaldia Hymenoxys Dugaldia GC_ID:1 ncbi_taxonomy Hymenoxys lemmonii GC_ID:1 ncbi_taxonomy Eutypa lata UCREL1 BRMV GC_ID:1 ncbi_taxonomy Bean rugose mosaic virus BRMV GC_ID:1 ncbi_taxonomy Coconut tinangaja viroid GC_ID:1 ncbi_taxonomy Peach latent mosaic viroid GC_ID:1 ncbi_taxonomy Phyllosticta coryli GC_ID:1 ncbi_taxonomy Avocado sunblotch viroid GC_ID:1 ncbi_taxonomy Chrysanthemum stunt viroid GC_ID:1 Botryotinia fuckeliana BcDW1 ncbi_taxonomy Botrytis cinerea BcDW1 Botryotinia fuckeliana BcDW1 NCBITaxon:37559 NCBITaxon:37963 NCBITaxon:39419 GC_ID:1 ncbi_taxonomy unclassified unclassified sequences unclassified sequences unclassified unclassified sequences GC_ID:1 ncbi_taxonomy Hemileia vastatrix HvCat GC_ID:11 PMID:1371056 PMID:2275854 Acidivorax ncbi_taxonomy Acidovorax Acidivorax GC_ID:11 ncbi_taxonomy Pseudomonas cannabina pv. alisalensis str. PSa1-3 NCBITaxon:496421 GC_ID:1 ncbi_taxonomy Glomerella tucumanensis Physalospora tucumanensis Colletotrichum falcatum Glomerella tucumanensis Physalospora tucumanensis GC_ID:1 ncbi_taxonomy Chalaropsis GC_ID:1 ncbi_taxonomy Polystigma GC_ID:1 ncbi_taxonomy Cenchrinae GC_ID:1 ncbi_taxonomy Phytophthora arecae GC_ID:1 ncbi_taxonomy Phytophthora hevea Phytophthora heveae Phytophthora hevea GC_ID:1 ncbi_taxonomy Coniocybomycetes GC_ID:1 ncbi_taxonomy Coniocybales NCBITaxon:482633 NCBITaxon:482636 NCBITaxon:482637 NCBITaxon:482639 NCBITaxon:482640 NCBITaxon:482641 NCBITaxon:482642 NCBITaxon:482643 NCBITaxon:482644 NCBITaxon:482645 NCBITaxon:482646 NCBITaxon:482647 NCBITaxon:482648 NCBITaxon:482649 NCBITaxon:482650 NCBITaxon:482651 NCBITaxon:482652 NCBITaxon:482654 NCBITaxon:482655 NCBITaxon:482812 NCBITaxon:482813 NCBITaxon:482814 NCBITaxon:482815 NCBITaxon:482816 NCBITaxon:482817 NCBITaxon:482818 NCBITaxon:482819 GC_ID:1 ncbi_taxonomy Phytophthora inflata GC_ID:1 ncbi_taxonomy Phytophthora katsurae GC_ID:1 ncbi_taxonomy Phytophthora phaseoli NCBITaxon:108599 GC_ID:1 ncbi_taxonomy Ascomycota incertae sedis GC_ID:11 ncbi_taxonomy Xanthomonas campestris pv. oryzicola Xanthomonas oryzae pv. oryzicola Xanthomonas campestris pv. oryzicola GC_ID:1 ncbi_taxonomy Becurtovirus NCBITaxon:5496 GC_ID:1 ncbi_taxonomy Chalara GC_ID:1 ncbi_taxonomy Flammulina velutipes L11 NCBITaxon:54188 GC_ID:1 ncbi_taxonomy Ceratocystis paradoxa Ceratostomella paradoxa Chalara paradoxa Endoconidiophora paradoxa Ophiostoma paradoxum Sporoschisma paradoxum Thielaviopsis paradoxa Ceratocystis paradoxa Ceratostomella paradoxa Chalara paradoxa Endoconidiophora paradoxa Ophiostoma paradoxum Sporoschisma paradoxum GC_ID:1 Pyrenophora semeniperda CCB06 ncbi_taxonomy Pyrenophora seminiperda CCB06 Pyrenophora semeniperda CCB06 GC_ID:1 ncbi_taxonomy Sphaerella pomi Mycosphaerella pomi Sphaerella pomi GC_ID:1 ncbi_taxonomy Phomopsis ganjae Diaporthe ganjae Phomopsis ganjae GC_ID:1 ncbi_taxonomy Fuchsia GC_ID:1 ncbi_taxonomy Anserineae GC_ID:1 ncbi_taxonomy Chenopodioideae GC_ID:1 charophyte/embryophyte group ncbi_taxonomy Charophyta/Embryophyta group Streptophytina charophyte/embryophyte group Charophyta/Embryophyta group GC_ID:1 ncbi_taxonomy Cherry mottle leaf virus NCBITaxon:29913 GC_ID:1 ncbi_taxonomy Mycovelosiella Mycovellosiella Mycovelosiella GC_ID:1 ncbi_taxonomy Passalora GC_ID:1 ncbi_taxonomy mitosporic Ascomycota Phaeoramularia mitosporic Ascomycota GC_ID:1 ncbi_taxonomy Pseudocercospora GC_ID:1 Stigmina ncbi_taxonomy mitosporic Dothideales Stigmina <ascomycete fungi> Stigmina mitosporic Dothideales GC_ID:1 ncbi_taxonomy Schizophyllum commune Loenen D GC_ID:1 ncbi_taxonomy Exobasidium vaccinii MPITM GC_ID:1 ncbi_taxonomy Zopfia rhizophila CBS 207.26 GC_ID:1 ncbi_taxonomy Laetiporus sulphureus 93-53 GC_ID:1 ncbi_taxonomy biota cellular organisms biota GC_ID:1 ncbi_taxonomy Armillaria mellea 131 GC_ID:1 ncbi_taxonomy Phytophthora parasitica P1976 GC_ID:1 ncbi_taxonomy Fusarium culmorum CS7071 GC_ID:1 ncbi_taxonomy Acrocalymma GC_ID:1 ncbi_taxonomy Cercospora canescens GC_ID:1 ncbi_taxonomy Cercospora apii NCBITaxon:5573 GC_ID:1 PMID:34380577 ncbi_taxonomy Rhizoctonia GC_ID:1 ncbi_taxonomy Myrothecium sp. cp0024d NCBITaxon:1237070 NCBITaxon:131367 NCBITaxon:231477 NCBITaxon:40622 NCBITaxon:453762 NCBITaxon:487226 NCBITaxon:875440 GC_ID:1 ncbi_taxonomy Fusarium neocosmosporiellum O'Donnell & Geiser, 2013 Neocosmospora africana Neocosmospora vasinfecta Neocosmospora vasinfecta var. africana Neocosmospora vasinfecta var. vasinfecta Fusarium neocosmosporiellum Fusarium neocosmosporiellum O'Donnell & Geiser, 2013 Neocosmospora africana Neocosmospora vasinfecta Neocosmospora vasinfecta var. africana Neocosmospora vasinfecta var. vasinfecta GC_ID:1 ncbi_taxonomy Lentinus tigrinus ALCF2SS1-6 GC_ID:11 ncbi_taxonomy Rathayibacter tritici NCPPB 1857 GC_ID:11 PMID:30533634 Rathayibacter iranicus VKM Ac-1602 = NCPPB 2253 ncbi_taxonomy Rathayibacter iranicus NCPPB 2253 Rathayibacter iranicus VKM Ac-1602 Rathayibacter iranicus NCPPB 2253 = VKM Ac-1602 Rathayibacter iranicus VKM Ac-1602 = NCPPB 2253 Rathayibacter iranicus NCPPB 2253 Rathayibacter iranicus VKM Ac-1602 GC_ID:1 ncbi_taxonomy Tilletia GC_ID:1 PMID:23379853 ncbi_taxonomy Fusarium lateritium species complex NCBITaxon:61258 GC_ID:1 stinking smut of wheat wheat bunt fungus ncbi_taxonomy Tilletia tritici Uredo caries Tilletia caries stinking smut of wheat wheat bunt fungus Tilletia tritici Uredo caries GC_ID:1 dwarf bunt fungus ncbi_taxonomy Tilletia controversa J.G. Kuhn, 1874 Tilletia controversa dwarf bunt fungus Tilletia controversa J.G. Kuhn, 1874 GC_ID:1 PMID:22839753 PMID:25450099 ncbi_taxonomy Archosauria-Testudines Testudines + Archosauria group Archelosauria Archosauria-Testudines Testudines + Archosauria group GC_ID:1 PMID:23379853 ncbi_taxonomy Fusarium decemcellulare species complex GC_ID:1 PMID:22982760 split-tongued squamates ncbi_taxonomy Bifurcata split-tongued squamates GC_ID:11 PMID:23632228 ncbi_taxonomy Lelliottia GC_ID:1 ncbi_taxonomy Heterodera hordecalis GC_ID:12 ncbi_taxonomy Candida albicans CEC2023 GC_ID:1 ncbi_taxonomy Chamaesyce Euphorbia subgen. Chamaesyce Chamaesyce GC_ID:1 ncbi_taxonomy Euphorbia sect. Plagianthae GC_ID:1 ncbi_taxonomy Euphorbia sect. Poinsettia GC_ID:1 ncbi_taxonomy Euphorbia subsect. Stormieae GC_ID:1 ncbi_taxonomy Cercospora citrullina GC_ID:1 ncbi_taxonomy Dipnotetrapodomorpha GC_ID:1 ncbi_taxonomy Carya GC_ID:1 ncbi_taxonomy Passiflora aff. ekmanii KEPU-2013 NCBITaxon:41567 GC_ID:1 ncbi_taxonomy Dendranthema Chrysanthemum Dendranthema GC_ID:1 ncbi_taxonomy Macrosporium saponariae Alternaria saponariae Macrosporium saponariae GC_ID:1 ncbi_taxonomy Comoclathris GC_ID:1 PMID:33419433 ncbi_taxonomy Clerodendron Clerodendrum Clerodendron GC_ID:1 ncbi_taxonomy Capnodiales NCBITaxon:49384 GC_ID:1 coffee ncbi_taxonomy Psilanthus Coffea coffee Psilanthus GC_ID:1 arabica coffee coffee ncbi_taxonomy Coffea arabica arabica coffee coffee GC_ID:1 ncbi_taxonomy Rhizopodaceae GC_ID:1 ncbi_taxonomy Gilbertelloideae GC_ID:1 ncbi_taxonomy Choanephoroideae GC_ID:1 ncbi_taxonomy Mucorineae GC_ID:1 hazelnuts ncbi_taxonomy Corylus hazelnuts GC_ID:1 European hazelnut ncbi_taxonomy Corylus avellana European hazelnut GC_ID:1 downy mildew ncbi_taxonomy Peronospora farinosa downy mildew GC_ID:1 ncbi_taxonomy Cylindrocarpon GC_ID:1 ncbi_taxonomy Cercospora gerberae GC_ID:1 ncbi_taxonomy Cercospora brassicicola GC_ID:1 ncbi_taxonomy Peronospora farinosa f. sp. spinaciae GC_ID:1 ncbi_taxonomy Parastagonospora NCBITaxon:55066 NCBITaxon:55068 GC_ID:1 ncbi_taxonomy Leptosphaeria avenaria Phaeosphaeria avenaria (G.F. Weber) O.E. Erikss., 1967 Septoria avenae Parastagonospora avenae Leptosphaeria avenaria Phaeosphaeria avenaria (G.F. Weber) O.E. Erikss., 1967 Septoria avenae GC_ID:1 ncbi_taxonomy Exacum NCBITaxon:198375 GC_ID:1 ncbi_taxonomy Exacum gracilipes Exacum affine Exacum gracilipes NCBITaxon:119612 NCBITaxon:119613 NCBITaxon:119618 NCBITaxon:119619 NCBITaxon:119620 NCBITaxon:119621 NCBITaxon:119622 NCBITaxon:119623 NCBITaxon:1961908 NCBITaxon:372984 NCBITaxon:565447 NCBITaxon:565450 NCBITaxon:92467 GC_ID:1 ncbi_taxonomy Erysiphe xanthii Podosphaera xanthii (Castagne) U. Braun & Shishkoff, 2000 Sphaerotheca xanthii Podosphaera xanthii Erysiphe xanthii Podosphaera xanthii (Castagne) U. Braun & Shishkoff, 2000 Sphaerotheca xanthii GC_ID:1 Pycnoporus coccineus BRFM310 ncbi_taxonomy Trametes coccinea BRFM310 Pycnoporus coccineus BRFM310 NCBITaxon:41621 GC_ID:1 ncbi_taxonomy Piloselloides Gerbera Piloselloides NCBITaxon:87002 GC_ID:1 Transvaal daisy ncbi_taxonomy Gerbera jamesonii Transvaal daisy GC_ID:1 ncbi_taxonomy Zygosaccharomyces bailii ISA1307 GC_ID:11 PMID:19786109 PMID:24408949 PMID:25481407 ncbi_taxonomy Lysobacterales Xanthomonadales Lysobacterales GC_ID:1 PMID:34380577 ncbi_taxonomy Heterobasidion GC_ID:11 ncbi_taxonomy Pseudomonadaceae NCBITaxon:1292239 GC_ID:1 ncbi_taxonomy Polyporus annosus Heterobasidion annosum Polyporus annosus GC_ID:11 ncbi_taxonomy Pseudomonas viridiflava TA043 GC_ID:1 ncbi_taxonomy Mucor racemosus B9645 GC_ID:1 ncbi_taxonomy Rhizopus microsporus B9738 GC_ID:1 ncbi_taxonomy Septorella sorghi Ramulispora sorghi Septorella sorghi GC_ID:1 ncbi_taxonomy Cercospora zeae-maydis GC_ID:1 ncbi_taxonomy Uromyces striatus NCBITaxon:1387169 NCBITaxon:1387170 NCBITaxon:1387171 NCBITaxon:1387172 NCBITaxon:1387173 NCBITaxon:1387175 NCBITaxon:1387176 GC_ID:11 PMID:10385200 PMID:22561591 PMID:24436067 PMID:8427800 corky root of lettuce ncbi_taxonomy Rhizomonas suberifaciens Sphingobium suberifaciens Sphingomonas suberifaciens Rhizorhapis suberifaciens corky root of lettuce Rhizomonas suberifaciens Sphingobium suberifaciens Sphingomonas suberifaciens GC_ID:11 ncbi_taxonomy Pseudomonas fuscovaginae ICMP 5940 GC_ID:1 Phaeocryptopus gaeumannii CBS 267.37 ncbi_taxonomy Nothophaeocryptopus gaeumannii CBS 267.37 Phaeocryptopus gaeumannii CBS 267.37 NCBITaxon:54791 GC_ID:1 ncbi_taxonomy Depazea nodorum Leptosphaeria nodorum Phaeosphaeria nodorum Septoria nodorum Stagonospora nodorum Parastagonospora nodorum Depazea nodorum Leptosphaeria nodorum Phaeosphaeria nodorum Septoria nodorum Stagonospora nodorum GC_ID:11 ncbi_taxonomy Pseudomonas aeruginosa group GC_ID:11 PMID:28360897 Pseudomonas fluorescens complex fluorescent pseudomonads ncbi_taxonomy Pseudomonas fluorescens group Pseudomonas fluorescens complex fluorescent pseudomonads GC_ID:11 PMID:29270162 ncbi_taxonomy Pseudomonas syringae group NCBITaxon:13655 NCBITaxon:298705 NCBITaxon:56360 NCBITaxon:59802 GC_ID:11 PMID:10385200 PMID:10843052 PMID:11491340 PMID:12361250 PMID:13130003 PMID:2111872 PMID:22228660 PMID:28691655 PMID:8186095 PMID:9103650 PMID:9336925 ncbi_taxonomy Sphingomonas NCBITaxon:57534 GC_ID:1 ncbi_taxonomy Vaccinium GC_ID:1 ncbi_taxonomy Cylindrocladiella GC_ID:1 ncbi_taxonomy Cylindrocladium parvum Cylindrocladiella parva Cylindrocladium parvum GC_ID:1 American cranberry large cranberry ncbi_taxonomy Oxycoccus macrocarpos Vaccinium macrocarpon American cranberry large cranberry Oxycoccus macrocarpos GC_ID:1 ncbi_taxonomy Myxogastromycetidae GC_ID:1 ncbi_taxonomy Pratylenchus zeae NCBITaxon:1955099 GC_ID:1 ncbi_taxonomy Boletus medulla-panis Perenniporia medulla-panis Boletus medulla-panis GC_ID:1 ncbi_taxonomy Ipomovirus NCBITaxon:980520 GC_ID:1 ncbi_taxonomy Cassava brown streak virus GC_ID:11 ncbi_taxonomy Pantoea ananatis BD442 GC_ID:1 ncbi_taxonomy Peniophora sp. monte123 GC_ID:1 ncbi_taxonomy Thanatephorus cucumeris JGI SC002DCMIDF GC_ID:1 annual rape canola ncbi_taxonomy Brassica napus subsp. napus Brassica napus subsp. oleifera Brassica napus var. oleifera Brassica napus var. napus annual rape canola Brassica napus subsp. napus Brassica napus subsp. oleifera Brassica napus var. oleifera GC_ID:1 ncbi_taxonomy Seiridium GC_ID:1 ncbi_taxonomy Moniliophthora roreri MCA 2997 GC_ID:1 ncbi_taxonomy Synchytrium aureum GC_ID:1 ncbi_taxonomy Boletus supinus Fomes supinus Fomitopsis supina Polyporus supinus Scindalma supinum Fomitella supina Boletus supinus Fomes supinus Fomitopsis supina Polyporus supinus Scindalma supinum NCBITaxon:2954866 GC_ID:11 ncbi_taxonomy Bacillus/Staphylococcus group Caryophanales Bacillales Bacillus/Staphylococcus group Caryophanales GC_ID:11 PMID:10843090 PMID:11491334 PMID:1742196 PMID:2223602 PMID:23475340 PMID:7727277 PMID:8138135 PMID:8863420 Bacillus Bacillus rRNA group 1 ncbi_taxonomy Bacillus <firmicutes> Bacillus Bacillus rRNA group 1 GC_ID:1 ncbi_taxonomy Cylindrosporium pistaciae Phloeospora pistaciae Septoria pistaciae Cylindrosporium pistaciae Phloeospora pistaciae GC_ID:1 ncbi_taxonomy Mycosphaerella pistaciarum Septoria pistaciarum Mycosphaerella pistaciarum GC_ID:1 ncbi_taxonomy Cocos GC_ID:1 coconut palm ncbi_taxonomy Cocos nucifera coconut palm GC_ID:1 ncbi_taxonomy Potato latent virus NCBITaxon:34477 GC_ID:1 ncbi_taxonomy Agaricomycotina incertae sedis GC_ID:1 ncbi_taxonomy Hyphodontia aspera NCBITaxon:2980790 GC_ID:1 ncbi_taxonomy Cyphellaceae GC_ID:1 ncbi_taxonomy Citrus sp. kk53 NCBITaxon:2008362 GC_ID:1 ncbi_taxonomy Boletus populinus Rigidoporus populinus Oxyporus populinus Boletus populinus Rigidoporus populinus GC_ID:1 ncbi_taxonomy Hymenochaete GC_ID:1 PMID:30368779 ncbi_taxonomy Hymenochaetales GC_ID:1 ncbi_taxonomy Physisporinus GC_ID:1 ncbi_taxonomy Colletotrichum graminicola iJAB2 GC_ID:11 ncbi_taxonomy Burkholderia cepacia JBK9 GC_ID:1 ncbi_taxonomy Botrytis aclada GC_ID:1 ncbi_taxonomy Botryotinia squamosa Botrytis squamosa J.C.Walker Botrytis squamosa Botryotinia squamosa Botrytis squamosa J.C.Walker GC_ID:1 ncbi_taxonomy Botrytis byssoidea GC_ID:1 ncbi_taxonomy Dictyochaeta NCBITaxon:2898063 GC_ID:1 ncbi_taxonomy Codinaea fertilis Dictyochaeta fertilis Codinaea fertilis GC_ID:11 ncbi_taxonomy Enterobacter cloacae UCI 29 GC_ID:1 ncbi_taxonomy Helminthosporium solani B-AC-16A GC_ID:1 ncbi_taxonomy Pythium aristosporum GC_ID:1 ncbi_taxonomy Pythium tracheiphilum GC_ID:1 ncbi_taxonomy Neonectria GC_ID:1 ncbi_taxonomy Eutypella NCBITaxon:2614735 NCBITaxon:3045380 GC_ID:1 pie cherry sour cherry ncbi_taxonomy Cerasus vulgaris Prunus vulgaris Prunus cerasus pie cherry sour cherry Cerasus vulgaris Prunus vulgaris NCBITaxon:1191421 NCBITaxon:1219390 NCBITaxon:1225091 NCBITaxon:1286049 NCBITaxon:1683506 NCBITaxon:1683507 NCBITaxon:1683531 NCBITaxon:3028149 NCBITaxon:405417 GC_ID:11 ncbi_taxonomy Priestia megaterium GC_ID:1 ncbi_taxonomy Trametes sp. zzu1 GC_ID:1 ncbi_taxonomy Pleurotus sp. ql-11 GC_ID:1 ncbi_taxonomy Coprinus sp. ql-8 GC_ID:1 ncbi_taxonomy Allexivirus GC_ID:1 ncbi_taxonomy Penicillium expansum T01 GC_ID:1 ncbi_taxonomy Cercospora caribaea Phaeoramularia manihotis Cercospora caribaea GC_ID:1 ncbi_taxonomy Pichia aff. alni PLE2W3 GC_ID:1 ncbi_taxonomy Puccinia horiana BY2013C01 NCBITaxon:1042380 NCBITaxon:1042381 NCBITaxon:1042382 NCBITaxon:1224247 NCBITaxon:1232470 NCBITaxon:1232819 NCBITaxon:1232822 NCBITaxon:1232824 NCBITaxon:1232825 NCBITaxon:1232828 NCBITaxon:1232830 NCBITaxon:1232840 NCBITaxon:1232841 NCBITaxon:1232844 NCBITaxon:1429427 NCBITaxon:1429428 NCBITaxon:1451270 NCBITaxon:1451272 NCBITaxon:1494536 NCBITaxon:1494586 NCBITaxon:1617262 NCBITaxon:1652099 NCBITaxon:1695905 NCBITaxon:1707495 NCBITaxon:1760969 NCBITaxon:1828507 NCBITaxon:387338 NCBITaxon:523730 NCBITaxon:941949 NCBITaxon:981081 GC_ID:11 PMID:11211269 ncbi_taxonomy Bacillus mesentericus Bacillus natto Bacillus subtilis/Bacillus globigii Bacillus uniflagellatus Vibrio subtilis Bacillus subtilis Bacillus mesentericus Bacillus natto Bacillus subtilis/Bacillus globigii Bacillus uniflagellatus Vibrio subtilis GC_ID:11 ncbi_taxonomy Burkholderia andropogonis Ba3549 Paraburkholderia andropogonis Ba3549 Robbsia andropogonis Ba3549 Burkholderia andropogonis Ba3549 Paraburkholderia andropogonis Ba3549 NCBITaxon:1917185 GC_ID:1 ncbi_taxonomy Curvularia carica-papayae Curvularia caricae-papayae Curvularia carica-papayae GC_ID:1 ncbi_taxonomy Phyllostictaceae GC_ID:1 ncbi_taxonomy Macrodiplodiopsis NCBITaxon:187252 GC_ID:1 ncbi_taxonomy Gloeosporium castaneicola Gloeosporium castanicola Pilidiella castaneicola Coniella castaneicola Gloeosporium castaneicola Gloeosporium castanicola Pilidiella castaneicola GC_ID:11 ncbi_taxonomy Dickeya dadantii DCE-01 GC_ID:1 PMID:11062127 PMID:9342353 ncbi_taxonomy Eumycetozoa Zopf, 1884 Mycetozoa mycetozoans Eumycetozoa Eumycetozoa Zopf, 1884 Mycetozoa mycetozoans GC_ID:1 ncbi_taxonomy Ascochyta sorghi GC_ID:1 ncbi_taxonomy Aspergillus flavus FRR 4351 GC_ID:1 ncbi_taxonomy Sclerotinia borealis F-4128 NCBITaxon:143449 GC_ID:1 ncbi_taxonomy Cercospora arachidicola Mycosphaerella arachidis Cercospora arachidicola GC_ID:1 ncbi_taxonomy Plasmopara viticola GC_ID:1 ncbi_taxonomy Pseudoperonospora GC_ID:1 ncbi_taxonomy Pseudoperonospora cubensis GC_ID:1 ncbi_taxonomy Trichoderma harzianum T23 GC_ID:11 ncbi_taxonomy Erwinia sp. ho35 GC_ID:1 PMID:11743200 PMID:11791233 ncbi_taxonomy Boreotheria Boreoeutheria Boreotheria GC_ID:1 ncbi_taxonomy Acrogymnospermae GC_ID:1 PMID:25249442 ncbi_taxonomy Mesangiospermae GC_ID:1 PMID:26350789 ncbi_taxonomy Petrosaviidae GC_ID:1 ncbi_taxonomy Pentapetalae GC_ID:1 ncbi_taxonomy Benyvirus GC_ID:1 ncbi_taxonomy Neofabraea GC_ID:1 perennial canker of apple ncbi_taxonomy Cryptosporiopsis perennans Pezicula perennans Neofabraea perennans perennial canker of apple Cryptosporiopsis perennans Pezicula perennans GC_ID:11 ncbi_taxonomy Pseudomonas cichorii JBC1 GC_ID:11 ncbi_taxonomy Rhodococcus fascians A3b GC_ID:1 ncbi_taxonomy Cercospora palmivora Exosporium palmivorum Sciniatosporium palmivorum Stigmina palmivora Cercospora palmivora Exosporium palmivorum Sciniatosporium palmivorum GC_ID:1 ncbi_taxonomy Pseudoepicoccum GC_ID:1 ncbi_taxonomy Epicoccum cocos Pseudoepicoccum cocos Epicoccum cocos GC_ID:1 ncbi_taxonomy Pinales GC_ID:11 ncbi_taxonomy Pseudomonas aeruginosa BWH033 GC_ID:1 ncbi_taxonomy Globisporangium GC_ID:1 ncbi_taxonomy Corynespora cassiicola Philippines GC_ID:1 ncbi_taxonomy Fusarium graminearum CS3005 GC_ID:1 ncbi_taxonomy Aspergillus niger NRRL3 GC_ID:11 ncbi_taxonomy Bacillus megaterium Q3 Priestia megaterium Q3 Bacillus megaterium Q3 GC_ID:11 ncbi_taxonomy Xylella fastidiosa J1a12 GC_ID:11 ncbi_taxonomy Pseudomonas pseudoalcaligenes AD6 Pseudomonas oleovorans AD6 Pseudomonas pseudoalcaligenes AD6 NCBITaxon:1961118 NCBITaxon:2048501 NCBITaxon:2306438 NCBITaxon:74422 GC_ID:1 ncbi_taxonomy Bipolaris spicifera Brachycladium spiciferum Cochliobolus spicifer Dendryphion spiciferum Drechslera spicifera Helminthosporium spiciferum Curvularia spicifera Bipolaris spicifera Brachycladium spiciferum Cochliobolus spicifer Dendryphion spiciferum Drechslera spicifera Helminthosporium spiciferum GC_ID:11 ncbi_taxonomy Agrobacterium tumefaciens S2 NCBITaxon:213562 GC_ID:1 ncbi_taxonomy Bulimuloidea Orthalicoidea Bulimuloidea NCBITaxon:267283 GC_ID:1 Brassica rapa (Campestris Group) Brassica rapa (Oleifera Group) Brassica rapa subsp. silvestris Brassica rapa var. silvestris biennial turnip rape ncbi_taxonomy Brassica campestris Brassica campestris var. oleifera Brassica rapa Winter Turnip Rape Group Brassica rapa subsp. campestris Brassica rapa subsp. sylvestris Brassica rapa var. sylvestris Brassica rapa subsp. oleifera Brassica rapa (Campestris Group) Brassica rapa (Oleifera Group) Brassica rapa subsp. silvestris Brassica rapa var. silvestris biennial turnip rape Brassica campestris Brassica campestris var. oleifera Brassica rapa Winter Turnip Rape Group Brassica rapa subsp. campestris Brassica rapa subsp. sylvestris Brassica rapa var. sylvestris GC_ID:11 ncbi_taxonomy Ralstonia solanacearum Rs-10-244 GC_ID:1 ncbi_taxonomy Dorylaimia GC_ID:1 ncbi_taxonomy Phakopsoraceae GC_ID:11 ncbi_taxonomy Xanthomonas oryzae pv. oryzae PXO86 GC_ID:1 ncbi_taxonomy Vermicularia circinans Colletotrichum circinans Vermicularia circinans GC_ID:1 ncbi_taxonomy Coniothyriaceae GC_ID:1 ncbi_taxonomy Glycine subgen. Soja GC_ID:1 ncbi_taxonomy Ranunculoideae GC_ID:1 ncbi_taxonomy Anemoneae GC_ID:1 ncbi_taxonomy Cassava Ivorian bacilliform virus GC_ID:1 ncbi_taxonomy Acremonium sp. snG05H1 GC_ID:1 ncbi_taxonomy Mycena aff. murina D1.1c GC_ID:1 ncbi_taxonomy Bjerkandera sp. bje54 GC_ID:1 ncbi_taxonomy Colletotrichum sp. cse34 NCBITaxon:1647564 GC_ID:1 ncbi_taxonomy Ehrhartoideae Oryzoideae Ehrhartoideae GC_ID:1 ncbi_taxonomy Pooideae NCBITaxon:219388 GC_ID:1 ncbi_taxonomy Centothecoideae Panicoideae Centothecoideae GC_ID:1 ncbi_taxonomy PACMAD clade GC_ID:1 ncbi_taxonomy Oryzeae GC_ID:1 ncbi_taxonomy Poeae GC_ID:1 ncbi_taxonomy Bromeae GC_ID:1 ncbi_taxonomy Triticeae GC_ID:1 ncbi_taxonomy Paniceae GC_ID:1 ncbi_taxonomy Andropogoneae GC_ID:1 ncbi_taxonomy Pleosporales incertae sedis GC_ID:1 true yeasts ncbi_taxonomy Saccharomycotina true yeasts GC_ID:1 filamentous ascomycetes ncbi_taxonomy Euascomycota Pezizomycotina filamentous ascomycetes Euascomycota GC_ID:1 ncbi_taxonomy Loculoascomycetes bitunicate ascomycetes Dothideomycetes Loculoascomycetes bitunicate ascomycetes NCBITaxon:147540 GC_ID:1 ncbi_taxonomy Loculoascomycetes Plectomycetes bitunicate ascomycetes Eurotiomycetes Loculoascomycetes Plectomycetes bitunicate ascomycetes GC_ID:1 ncbi_taxonomy Lecanoromycetes NCBITaxon:194550 GC_ID:1 PMID:32647610 ncbi_taxonomy Leotiomycetes GC_ID:1 ncbi_taxonomy Pezizomycetes GC_ID:1 ncbi_taxonomy Pyrenomycetes Sordariomycetes Pyrenomycetes NCBITaxon:437799 GC_ID:1 ncbi_taxonomy Sordariomycetes incertae sedis GC_ID:1 ncbi_taxonomy Archiascomycota Taphrinomycetes Archiascomycota GC_ID:1 ncbi_taxonomy Pythium megalacanthum Globisporangium megalacanthum Pythium megalacanthum GC_ID:1 ncbi_taxonomy Cylindrocladium peruvianum Cylindrocladiella peruviana Cylindrocladium peruvianum GC_ID:1 ncbi_taxonomy Streptocarpinae GC_ID:1 ncbi_taxonomy Dothideales incertae sedis NCBITaxon:29878 NCBITaxon:41252 NCBITaxon:5138 NCBITaxon:89476 GC_ID:1 ncbi_taxonomy Magnaporthe grisea Magnaporthe grisea (T.T. Hebert) M.E. Barr, 1977 Pyricularia grisea Magnaporthe grisea Magnaporthe grisea (T.T. Hebert) M.E. Barr, 1977 NCBITaxon:172189 GC_ID:1 ncbi_taxonomy Melanconidaceae GC_ID:1 ncbi_taxonomy Melanconis GC_ID:1 ncbi_taxonomy Apiognomonia GC_ID:1 ncbi_taxonomy Gnomonia GC_ID:1 ncbi_taxonomy Peronospora rubi GC_ID:1 ncbi_taxonomy Phacidiales GC_ID:1 ncbi_taxonomy Macrosporium GC_ID:1 ncbi_taxonomy Hendersonia GC_ID:1 Patellina ncbi_taxonomy Patellina <ascomycete fungi> Patellina GC_ID:1 ncbi_taxonomy Osteoglossocephalai GC_ID:1 ncbi_taxonomy Osteoglossocephala GC_ID:1 ncbi_taxonomy Euteleosteomorpha GC_ID:1 ncbi_taxonomy Characoidei GC_ID:1 ncbi_taxonomy Siluroidei GC_ID:1 ncbi_taxonomy Percomorphaceae NCBITaxon:94242 GC_ID:1 ncbi_taxonomy Pelagimorpharia Stromateoidei Pelagiaria Pelagimorpharia Stromateoidei NCBITaxon:8223 GC_ID:1 tunas and others ncbi_taxonomy Scombroidei Scombriformes tunas and others Scombroidei GC_ID:1 ncbi_taxonomy Carangimorpha Carangimorphariae Carangaria Carangimorpha Carangimorphariae NCBITaxon:75377 GC_ID:1 jacks and others ncbi_taxonomy Carangoidei Carangiformes jacks and others Carangoidei GC_ID:1 ncbi_taxonomy Stiassnyiformes Ovalentaria Stiassnyiformes GC_ID:1 ncbi_taxonomy Cichlomorphae NCBITaxon:1489912 GC_ID:1 cichlids and convict blennies ncbi_taxonomy Pholidichthyiformes Cichliformes cichlids and convict blennies Pholidichthyiformes GC_ID:1 ncbi_taxonomy Percomorpharia Eupercaria Percomorpharia GC_ID:1 spadefishes and sicklefishes ncbi_taxonomy Ephippiformes spadefishes and sicklefishes GC_ID:1 ncbi_taxonomy Magnaporthiopsis GC_ID:11 ncbi_taxonomy Streptomyces sp. cr30 GC_ID:1 ncbi_taxonomy Botryosphaeria sp. kaf2-N2 GC_ID:1 ncbi_taxonomy Diaporthe sp. kaf2-Y3 GC_ID:1 ncbi_taxonomy Phomopsis sp. kaf1-XS(2) GC_ID:11 ncbi_taxonomy Pseudomonas sp. acu86 GC_ID:1 ncbi_taxonomy Rhizoctonia solani AG-A NCBITaxon:2638316 GC_ID:1 ncbi_taxonomy unclassified Ovatisporangium unclassified Phytopythium unclassified Ovatisporangium GC_ID:11 ncbi_taxonomy Xanthomonas sp. pist7 GC_ID:1 ncbi_taxonomy Fusarium solani f. sp. passiflorae GC_ID:1 ncbi_taxonomy Garlic virus X GC_ID:1 ncbi_taxonomy Acrodontium GC_ID:1 ncbi_taxonomy Graphiaceae NCBITaxon:888779 GC_ID:1 Graphium ncbi_taxonomy Rhexographium Graphium <ascomycete fungi> Graphium Rhexographium GC_ID:1 ncbi_taxonomy Neodevriesiaceae TAMV GC_ID:1 ncbi_taxonomy Tulare apple mosaic virus TAMV GC_ID:1 ncbi_taxonomy Paratylenchus projectus GC_ID:1 ncbi_taxonomy Rotylenchulus borealis GC_ID:1 ncbi_taxonomy Alphacryptovirus Alphapartitivirus Alphacryptovirus GC_ID:1 ncbi_taxonomy Benyviridae GC_ID:1 ncbi_taxonomy Sweet potato leaf curl Uganda virus GC_ID:1 ncbi_taxonomy Gymnosporangium kernianum GC_ID:1 ncbi_taxonomy Nicotiana tabacum/Hyoscyamus niger cybrid GC_ID:1 ncbi_taxonomy OSLEUM clade GC_ID:1 ncbi_taxonomy Monochaetia NCBITaxon:227042 GC_ID:1 ncbi_taxonomy Trichosphaeriales GC_ID:1 ncbi_taxonomy Trichosphaeriaceae NCBITaxon:123613 GC_ID:1 ncbi_taxonomy Diaporthales incertae sedis GC_ID:1 ncbi_taxonomy Syspastospora GC_ID:1 ncbi_taxonomy Sphaeronaema parasiticum Syspastospora parasitica Sphaeronaema parasiticum GC_ID:1 ncbi_taxonomy Acrostalagmus sp. ca_besc_24b GC_ID:1 ncbi_taxonomy Aureobasidium sp. nwa_sqmc_25_5f GC_ID:1 ncbi_taxonomy Drechslera sp. ca_sqma_28_3c GC_ID:1 Hypocrea sp. nc_cynh_28_3a ncbi_taxonomy Trichoderma sp. nc_cynh_28_3a Hypocrea sp. nc_cynh_28_3a GC_ID:1 ncbi_taxonomy Pyrenochaeta sp. nwa_besc_241a GC_ID:1 ncbi_taxonomy Ulocladium sp. nwa_sqmc_254d GC_ID:12 ncbi_taxonomy Candida/Lodderomyces clade NCBITaxon:218106 NCBITaxon:251373 GC_ID:1 ncbi_taxonomy Schizoparmaceae GC_ID:1 ncbi_taxonomy Crinipellis perniciosa Marasmius perniciosus Moniliophthora perniciosa Crinipellis perniciosa Marasmius perniciosus GC_ID:1 ncbi_taxonomy Rosa sp. cu33,10.VIII.2008 GC_ID:1 ncbi_taxonomy Panchaetothripinae GC_ID:1 ncbi_taxonomy Setosphaeria turcica f. sp. sorghi [Setosphaeria] turcica f. sp. sorghi Setosphaeria turcica f. sp. sorghi GC_ID:1 ncbi_taxonomy Rhizoctonia leguminicola Slafractonia leguminicola Rhizoctonia leguminicola GC_ID:1 ncbi_taxonomy Dolichodorus heterocephalus GC_ID:1 ncbi_taxonomy Leptosphaeria sp. xz22 GC_ID:1 ncbi_taxonomy Rhizopus sp. xz12 GC_ID:1 ncbi_taxonomy Phoma sp. std3 GC_ID:1 ncbi_taxonomy Merliniidae GC_ID:1 ncbi_taxonomy Merliniinae GC_ID:1 ncbi_taxonomy Boletus pubescens Trametes pubescens Boletus pubescens GC_ID:1 ncbi_taxonomy Epicoccum sp. psrx-1 GC_ID:1 ncbi_taxonomy Rubus aff. wahlbergii MS-2014 GC_ID:1 ncbi_taxonomy Vararia GC_ID:1 Phytopythium MNS-2014a ncbi_taxonomy Phytopythium sp. MNS-2014a Phytopythium MNS-2014a GC_ID:11 ncbi_taxonomy Acidovorax sp. sk40 GC_ID:1 ncbi_taxonomy Bitylenchus brevilineatus GC_ID:1 rice bunt ncbi_taxonomy Neovossia horrida Tilletia horrida rice bunt Neovossia horrida GC_ID:1 ncbi_taxonomy Alternaria sp. aa11.229 GC_ID:1 ncbi_taxonomy Spilocaea GC_ID:1 ncbi_taxonomy Monosporascus GC_ID:1 ncbi_taxonomy Monosporascus cannonballus NCBITaxon:165804 NCBITaxon:165805 GC_ID:1 PMID:26955199 Tremellomycetidae ncbi_taxonomy Heterobasidiomycetes Tremellomycetes Tremellomycetidae Heterobasidiomycetes GC_ID:1 ncbi_taxonomy Agaricomycetidae sensu Kirk et al. 2001 Agaricomycetes Agaricomycetidae sensu Kirk et al. 2001 GC_ID:1 ncbi_taxonomy Calceolariaceae GC_ID:1 ncbi_taxonomy Tritimovirus GC_ID:11 ncbi_taxonomy environmental samples <viruses,unclassified bacterial viruses> GC_ID:1 ncbi_taxonomy Aureobasidiaceae Saccotheciei Saccotheciaceae Aureobasidiaceae Saccotheciei NCBITaxon:1571598 GC_ID:1 Pseudoidium sp. MUMH0119 ncbi_taxonomy Microsphaera azaleae Erysiphe azaleae Pseudoidium sp. MUMH0119 Microsphaera azaleae GC_ID:1 ncbi_taxonomy Microsphaera izuensis Erysiphe izuensis Microsphaera izuensis GC_ID:1 ncbi_taxonomy Neovossia barclayana Tilletia barclayana Neovossia barclayana GC_ID:1 ncbi_taxonomy Tilletia foetida Tilletia laevis Tilletia foetida GC_ID:1 ncbi_taxonomy Alternaria carthami GC_ID:11 ncbi_taxonomy Clavibacter GC_ID:11 PMID:10826825 PMID:12501368 ncbi_taxonomy Clavibacter xyli Leifsonia xyli Clavibacter xyli PeSV GC_ID:1 ncbi_taxonomy Pea streak virus PeSV OMV GC_ID:1 ncbi_taxonomy Oat mosaic virus OMV GC_ID:1 ncbi_taxonomy Heterodera ciceri GC_ID:1 ncbi_taxonomy Heterodera cruciferae GC_ID:1 ncbi_taxonomy Heterodera filipjevi GC_ID:1 ncbi_taxonomy Heterodera humuli GC_ID:1 ncbi_taxonomy Heterodera latipons GC_ID:1 ncbi_taxonomy Heterodera medicaginis NCBITaxon:2705191 GC_ID:1 ncbi_taxonomy Heterodera trifolii GC_ID:1 ncbi_taxonomy Punctoderinae GC_ID:1 ncbi_taxonomy Punctodera GC_ID:1 ncbi_taxonomy Punctodera punctata GC_ID:1 ncbi_taxonomy Deightoniella GC_ID:1 ncbi_taxonomy Cercospora solani GC_ID:1 ncbi_taxonomy Huntiella NCBITaxon:72030 GC_ID:1 ncbi_taxonomy Ceratocystis moniliformis Ceratostomella moniliformis Endoconidiophora moniliformis Ophiostoma moniliforme Huntiella moniliformis Ceratocystis moniliformis Ceratostomella moniliformis Endoconidiophora moniliformis Ophiostoma moniliforme GC_ID:1 ncbi_taxonomy Pleosporineae incertae sedis NCBITaxon:624263 GC_ID:1 ncbi_taxonomy Oncobasidium theobromae Thanatephorus theobromae Ceratobasidium theobromae Oncobasidium theobromae Thanatephorus theobromae GC_ID:1 ncbi_taxonomy Epidendroideae GC_ID:1 ncbi_taxonomy Epidendreae GC_ID:1 ncbi_taxonomy Laeliinae GC_ID:1 ncbi_taxonomy Onagroideae GC_ID:1 ncbi_taxonomy Circaeeae NCBITaxon:1585533 GC_ID:1 ncbi_taxonomy Beta vulgaris/Cercospora beticola mixed library Beta vulgaris/Cercospora beticola mixed EST library Beta vulgaris/Cercospora beticola mixed library GC_ID:1 ncbi_taxonomy Polyporus coccineus Pycnoporus coccineus Trametes coccinea Polyporus coccineus Pycnoporus coccineus GC_ID:1 ncbi_taxonomy Coriolus sanguineus Fabisporus sanguineus Microporus sanguineus Polyporus sanguineus Polystictus sanguineus Pycnoporus sanguineus (L.) Murrill 1904 Trametes sanguinea Coriolus sanguineus Fabisporus sanguineus Microporus sanguineus Polyporus sanguineus Polystictus sanguineus Pycnoporus sanguineus (L.) Murrill 1904 NCBITaxon:291052 GC_ID:1 ncbi_taxonomy Phomopsis helianthi Diaporthe helianthi Phomopsis helianthi GC_ID:1 ncbi_taxonomy Acrocalymma medicaginis GC_ID:1 ncbi_taxonomy Phomopsis cucurbitae Diaporthe cucurbitae Phomopsis cucurbitae NCBITaxon:1036680 NCBITaxon:5043 NCBITaxon:561993 GC_ID:1 ncbi_taxonomy mitosporic Ascomycota Acremonium mitosporic Ascomycota GC_ID:1 ncbi_taxonomy Phloeospora NCBITaxon:93480 GC_ID:1 ncbi_taxonomy Kabatiella zeae Aureobasidium zeae Kabatiella zeae GC_ID:1 wild rice ncbi_taxonomy Zizania wild rice NCBITaxon:150174 GC_ID:1 ncbi_taxonomy Helotiales incertae sedis GC_ID:1 ncbi_taxonomy Fuligo NCBITaxon:166047 GC_ID:1 ncbi_taxonomy Dothideomycetes incertae sedis GC_ID:1 ncbi_taxonomy Zopfiaceae GC_ID:1 ncbi_taxonomy Zopfia GC_ID:1 ncbi_taxonomy Zopfia rhizophila GC_ID:1 ncbi_taxonomy Mononychellus tanajoa GC_ID:1 ncbi_taxonomy Alternaria dianthicola GC_ID:1 PMID:25667078 ncbi_taxonomy Saccharum aff. villosum Welker 538 GC_ID:1 ncbi_taxonomy Cercospora asparagi GC_ID:1 ncbi_taxonomy Mucor sp. ht-7 GC_ID:1 beet ncbi_taxonomy Beta altissima Beta vulgaris beet Beta altissima GC_ID:1 ncbi_taxonomy Peronospora trifoliorum GC_ID:1 ncbi_taxonomy Pseudoperonospora humuli GC_ID:1 ncbi_taxonomy Sclerospora GC_ID:1 ncbi_taxonomy Protomyces graminicola Sclerospora graminicola Protomyces graminicola GC_ID:1 ncbi_taxonomy Plasmopara obducens GC_ID:1 ncbi_taxonomy Discosia GC_ID:1 ncbi_taxonomy Seimatosporium GC_ID:1 ncbi_taxonomy Hypocreales incertae sedis NCBITaxon:165723 GC_ID:1 ncbi_taxonomy Microstromatales GC_ID:1 ncbi_taxonomy Microstromatales incertae sedis GC_ID:1 ncbi_taxonomy Microbotryomycetidae Microbotryomycetes Microbotryomycetidae GC_ID:1 ncbi_taxonomy Urediniomycetidae Pucciniomycetes Urediniomycetidae GC_ID:1 ncbi_taxonomy Pyricularia sp. ck2 GC_ID:1 ncbi_taxonomy Claviceps sp. hz-1 GC_ID:1 ncbi_taxonomy Boletus sector Coriolus sector Hirschioporus sector Microporus sector Polyporus sector Polystictus sector Trichaptum sector Boletus sector Coriolus sector Hirschioporus sector Microporus sector Polyporus sector Polystictus sector GC_ID:1 ncbi_taxonomy Massarina walkeri Acrocalymma walkeri Massarina walkeri NCBITaxon:112176 NCBITaxon:78404 GC_ID:1 ncbi_taxonomy Cylindrocarpon ehrenbergii Cylindrocarpon magnusianum Fusarium candidum Nectria ramulariae Neonectria ramulariae Ramularia candida Neonectria candida Cylindrocarpon ehrenbergii Cylindrocarpon magnusianum Fusarium candidum